Query 007940
Match_columns 584
No_of_seqs 380 out of 2285
Neff 5.8
Searched_HMMs 46136
Date Thu Mar 28 17:21:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007940.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007940hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0745 OmpR Response regulato 99.9 1.1E-23 2.4E-28 211.5 16.6 202 18-261 1-204 (229)
2 COG2201 CheB Chemotaxis respon 99.8 1.9E-20 4.2E-25 196.6 14.0 221 18-288 2-238 (350)
3 COG2204 AtoC Response regulato 99.8 1.7E-19 3.6E-24 196.0 15.8 119 17-137 4-123 (464)
4 COG4566 TtrR Response regulato 99.8 1.1E-19 2.3E-24 175.0 12.1 169 15-185 2-171 (202)
5 COG4565 CitB Response regulato 99.8 3.5E-18 7.5E-23 167.4 17.4 119 18-138 1-122 (224)
6 COG4753 Response regulator con 99.8 3E-18 6.6E-23 186.1 13.8 117 18-136 2-122 (475)
7 PRK10766 DNA-binding transcrip 99.7 9E-17 1.9E-21 155.5 17.3 118 17-136 2-119 (221)
8 PRK10816 DNA-binding transcrip 99.7 6.4E-17 1.4E-21 157.1 16.3 117 18-136 1-118 (223)
9 PF00072 Response_reg: Respons 99.7 7E-17 1.5E-21 140.4 14.9 110 20-131 1-112 (112)
10 PRK10529 DNA-binding transcrip 99.7 1E-16 2.2E-21 155.6 16.9 117 18-136 2-118 (225)
11 PRK11173 two-component respons 99.7 1.3E-16 2.9E-21 157.1 17.9 119 17-137 3-121 (237)
12 PRK09836 DNA-binding transcrip 99.7 2.1E-16 4.6E-21 153.9 16.5 117 18-136 1-118 (227)
13 COG2197 CitB Response regulato 99.7 8.7E-17 1.9E-21 159.6 13.4 120 18-139 1-123 (211)
14 PRK13856 two-component respons 99.7 5.3E-16 1.1E-20 153.6 17.9 117 19-137 3-120 (241)
15 PRK10701 DNA-binding transcrip 99.7 5.2E-16 1.1E-20 152.9 17.1 117 19-137 3-119 (240)
16 COG3437 Response regulator con 99.7 1.8E-16 3.8E-21 165.6 14.1 121 15-137 12-136 (360)
17 PRK09468 ompR osmolarity respo 99.7 5.5E-16 1.2E-20 152.3 16.9 119 17-137 5-124 (239)
18 PRK11517 transcriptional regul 99.7 5.3E-16 1.2E-20 149.8 15.6 117 18-136 1-117 (223)
19 COG0784 CheY FOG: CheY-like re 99.7 1.4E-15 3E-20 135.5 16.4 120 15-135 3-125 (130)
20 PRK12555 chemotaxis-specific m 99.7 6.1E-16 1.3E-20 162.8 14.7 208 18-285 1-231 (337)
21 PRK10161 transcriptional regul 99.7 1.6E-15 3.5E-20 147.8 16.6 118 17-136 2-122 (229)
22 PRK10046 dpiA two-component re 99.7 2.1E-15 4.5E-20 149.4 17.0 121 15-137 2-125 (225)
23 PRK10643 DNA-binding transcrip 99.7 2.1E-15 4.5E-20 145.0 16.3 117 18-136 1-118 (222)
24 PRK10955 DNA-binding transcrip 99.7 2.4E-15 5.3E-20 146.1 16.7 117 18-137 2-118 (232)
25 PLN03029 type-a response regul 99.6 5E-15 1.1E-19 147.7 16.6 122 16-137 7-149 (222)
26 TIGR03787 marine_sort_RR prote 99.6 1.4E-14 3.1E-19 140.8 18.6 117 19-137 2-121 (227)
27 COG3706 PleD Response regulato 99.6 6.5E-15 1.4E-19 159.3 15.9 123 16-140 131-256 (435)
28 TIGR01387 cztR_silR_copR heavy 99.6 1.2E-14 2.6E-19 139.3 15.6 115 20-136 1-116 (218)
29 COG3947 Response regulator con 99.6 6.8E-15 1.5E-19 149.7 14.3 114 18-135 1-115 (361)
30 PRK00742 chemotaxis-specific m 99.6 7.2E-15 1.6E-19 155.6 13.0 218 16-285 2-242 (354)
31 TIGR02154 PhoB phosphate regul 99.6 5E-14 1.1E-18 135.5 16.8 118 17-136 2-122 (226)
32 PRK10336 DNA-binding transcrip 99.6 5.6E-14 1.2E-18 135.1 16.5 117 18-136 1-118 (219)
33 CHL00148 orf27 Ycf27; Reviewed 99.6 7.7E-14 1.7E-18 136.2 17.1 119 16-136 5-123 (240)
34 PRK11083 DNA-binding response 99.6 1.2E-13 2.5E-18 133.4 16.6 118 17-136 3-121 (228)
35 KOG0519 Sensory transduction h 99.6 2.3E-14 5.1E-19 166.6 13.9 119 15-134 664-784 (786)
36 PRK10430 DNA-binding transcrip 99.5 1.1E-13 2.5E-18 138.1 16.4 119 18-136 2-123 (239)
37 PRK15347 two component system 99.5 1E-13 2.2E-18 162.4 17.5 119 15-135 688-811 (921)
38 PRK10840 transcriptional regul 99.5 1.7E-13 3.7E-18 134.3 15.9 119 17-137 3-127 (216)
39 PRK10841 hybrid sensory kinase 99.5 1.3E-13 2.7E-18 163.4 17.9 119 16-136 800-919 (924)
40 PRK11107 hybrid sensory histid 99.5 1.2E-13 2.5E-18 161.7 17.0 120 15-136 665-787 (919)
41 PRK09958 DNA-binding transcrip 99.5 4.1E-13 8.8E-18 128.2 15.7 117 18-136 1-119 (204)
42 PLN03162 golden-2 like transcr 99.5 2.4E-14 5.2E-19 148.1 7.0 66 197-262 232-297 (526)
43 PRK11697 putative two-componen 99.5 4.7E-13 1E-17 132.1 15.4 115 18-136 2-118 (238)
44 PRK11466 hybrid sensory histid 99.5 3.6E-13 7.8E-18 158.1 16.6 120 16-136 680-800 (914)
45 TIGR02875 spore_0_A sporulatio 99.5 6.1E-13 1.3E-17 134.1 16.0 118 17-136 2-124 (262)
46 PRK14084 two-component respons 99.5 1E-12 2.2E-17 130.8 16.6 115 18-136 1-118 (246)
47 PRK09483 response regulator; P 99.5 9.4E-13 2E-17 126.9 15.6 118 18-137 2-122 (217)
48 COG4567 Response regulator con 99.5 3.8E-13 8.2E-18 125.6 12.3 112 19-132 11-123 (182)
49 PRK15115 response regulator Gl 99.5 7.6E-13 1.6E-17 143.9 16.1 119 16-136 4-123 (444)
50 PRK10360 DNA-binding transcrip 99.5 1.2E-12 2.6E-17 124.1 15.5 115 18-136 2-118 (196)
51 PRK09581 pleD response regulat 99.5 2.9E-13 6.3E-18 144.6 12.6 118 16-136 154-274 (457)
52 PRK10365 transcriptional regul 99.5 6.4E-13 1.4E-17 143.9 15.3 119 16-136 4-123 (441)
53 PRK10710 DNA-binding transcrip 99.5 2E-12 4.3E-17 126.3 17.3 118 17-136 10-127 (240)
54 PRK11361 acetoacetate metaboli 99.5 9.8E-13 2.1E-17 143.2 16.3 120 15-136 2-122 (457)
55 PRK11091 aerobic respiration c 99.5 8.8E-13 1.9E-17 152.8 16.2 119 15-136 523-645 (779)
56 PRK10923 glnG nitrogen regulat 99.4 1.5E-12 3.2E-17 142.6 16.9 118 17-136 3-121 (469)
57 TIGR02956 TMAO_torS TMAO reduc 99.4 9.9E-13 2.1E-17 155.1 16.2 119 16-136 701-823 (968)
58 PRK09935 transcriptional regul 99.4 2.9E-12 6.2E-17 122.2 16.3 118 17-136 3-123 (210)
59 PRK15479 transcriptional regul 99.4 3.3E-12 7.1E-17 122.7 16.7 118 18-137 1-119 (221)
60 PRK09959 hybrid sensory histid 99.4 1.8E-12 3.9E-17 156.7 16.5 119 15-135 956-1075(1197)
61 PRK10610 chemotaxis regulatory 99.4 1.5E-11 3.3E-16 105.0 16.8 120 15-136 3-126 (129)
62 TIGR02915 PEP_resp_reg putativ 99.4 2.8E-12 6.1E-17 139.5 15.3 113 20-136 1-119 (445)
63 PRK13435 response regulator; P 99.4 7.1E-12 1.5E-16 114.6 15.3 117 16-137 4-122 (145)
64 TIGR01818 ntrC nitrogen regula 99.4 4.5E-12 9.7E-17 138.4 15.4 115 20-136 1-116 (463)
65 PRK09390 fixJ response regulat 99.4 7.6E-12 1.6E-16 117.2 14.6 119 16-136 2-121 (202)
66 PRK09581 pleD response regulat 99.4 1.5E-11 3.3E-16 131.5 17.0 117 18-136 3-122 (457)
67 PRK11475 DNA-binding transcrip 99.3 3E-12 6.6E-17 126.9 10.1 109 29-139 2-118 (207)
68 PRK10100 DNA-binding transcrip 99.3 1.8E-11 3.9E-16 122.1 13.6 117 16-138 9-129 (216)
69 PRK15369 two component system 99.3 5.3E-11 1.1E-15 112.1 16.1 119 16-136 2-123 (211)
70 PRK13558 bacterio-opsin activa 99.3 1.4E-11 3.1E-16 140.3 14.3 118 17-136 7-127 (665)
71 PRK10403 transcriptional regul 99.3 5.1E-11 1.1E-15 113.2 15.6 118 17-136 6-126 (215)
72 PRK10651 transcriptional regul 99.3 8E-11 1.7E-15 112.2 16.0 120 16-137 5-127 (216)
73 PRK15411 rcsA colanic acid cap 99.2 9.7E-11 2.1E-15 115.9 14.1 117 18-137 1-124 (207)
74 PRK09191 two-component respons 99.2 1.8E-10 4E-15 115.2 15.8 116 17-136 137-254 (261)
75 COG3707 AmiR Response regulato 99.2 7.5E-11 1.6E-15 114.6 12.1 120 16-137 4-124 (194)
76 PRK13837 two-component VirA-li 99.2 3.2E-10 7E-15 133.0 16.4 118 16-136 696-814 (828)
77 cd00156 REC Signal receiver do 99.2 6.6E-10 1.4E-14 90.2 12.5 111 21-133 1-112 (113)
78 PRK13557 histidine kinase; Pro 99.1 1.4E-09 3.1E-14 118.8 15.6 120 16-136 414-535 (540)
79 PRK10693 response regulator of 99.1 9.6E-10 2.1E-14 114.7 12.2 90 46-137 2-93 (303)
80 TIGR01557 myb_SHAQKYF myb-like 99.0 5.6E-10 1.2E-14 89.0 5.6 54 200-253 1-55 (57)
81 COG3279 LytT Response regulato 98.9 4.6E-09 1E-13 106.8 11.1 115 18-136 2-119 (244)
82 PRK15029 arginine decarboxylas 98.9 6.1E-09 1.3E-13 120.5 13.2 107 18-126 1-122 (755)
83 PRK11107 hybrid sensory histid 98.2 1.6E-05 3.4E-10 93.7 14.4 114 15-134 534-650 (919)
84 COG3706 PleD Response regulato 98.1 4.4E-06 9.5E-11 91.3 5.5 92 42-136 13-104 (435)
85 smart00448 REC cheY-homologous 97.4 0.0013 2.8E-08 45.9 8.1 55 18-74 1-55 (55)
86 PF06490 FleQ: Flagellar regul 97.4 0.0016 3.5E-08 58.5 10.4 105 19-133 1-107 (109)
87 cd02071 MM_CoA_mut_B12_BD meth 95.9 0.21 4.5E-06 45.5 13.3 110 19-130 1-120 (122)
88 PRK02261 methylaspartate mutas 95.6 0.38 8.3E-06 45.0 14.0 116 16-134 2-134 (137)
89 cd02067 B12-binding B12 bindin 95.3 0.19 4.1E-06 45.1 10.4 94 24-119 10-109 (119)
90 PRK10618 phosphotransfer inter 95.1 0.024 5.3E-07 68.0 5.3 51 15-73 687-737 (894)
91 PF03709 OKR_DC_1_N: Orn/Lys/A 95.0 0.22 4.7E-06 45.1 10.0 104 29-134 5-112 (115)
92 TIGR00640 acid_CoA_mut_C methy 94.2 1.1 2.4E-05 41.7 12.8 110 24-135 13-128 (132)
93 COG4999 Uncharacterized domain 92.7 0.3 6.6E-06 44.9 6.1 109 15-129 9-120 (140)
94 TIGR03815 CpaE_hom_Actino heli 92.5 0.43 9.3E-06 50.3 8.0 85 41-134 1-86 (322)
95 PRK15399 lysine decarboxylase 91.2 1.8 3.9E-05 50.9 11.9 79 18-100 1-86 (713)
96 cd04728 ThiG Thiazole synthase 90.1 4.1 8.9E-05 42.0 11.9 111 18-136 94-226 (248)
97 PRK15400 lysine decarboxylase 89.9 2.3 5.1E-05 50.0 11.3 79 18-100 1-86 (714)
98 PF01339 CheB_methylest: CheB 89.7 0.049 1.1E-06 53.4 -2.2 66 218-285 2-77 (182)
99 PRK00208 thiG thiazole synthas 89.1 7.1 0.00015 40.3 12.7 111 18-136 94-226 (250)
100 PF02310 B12-binding: B12 bind 88.1 6.1 0.00013 34.9 10.4 91 26-118 13-110 (121)
101 TIGR01501 MthylAspMutase methy 87.7 11 0.00024 35.3 12.2 107 26-134 14-132 (134)
102 cd02070 corrinoid_protein_B12- 86.9 8.3 0.00018 38.1 11.5 98 17-119 82-191 (201)
103 PF10087 DUF2325: Uncharacteri 86.4 5.4 0.00012 34.7 8.8 90 19-109 1-93 (97)
104 COG2185 Sbm Methylmalonyl-CoA 85.3 19 0.00042 34.2 12.4 115 16-134 11-137 (143)
105 PRK03958 tRNA 2'-O-methylase; 84.6 11 0.00024 37.0 10.7 93 18-118 32-127 (176)
106 cd02069 methionine_synthase_B1 84.3 13 0.00027 37.5 11.5 102 16-120 87-202 (213)
107 PRK01130 N-acetylmannosamine-6 82.0 12 0.00026 37.2 10.4 85 32-119 109-202 (221)
108 CHL00162 thiG thiamin biosynth 81.6 25 0.00054 36.6 12.4 100 34-136 130-240 (267)
109 PRK09426 methylmalonyl-CoA mut 80.8 16 0.00034 43.3 12.2 116 18-135 583-708 (714)
110 PRK00043 thiE thiamine-phospha 80.0 23 0.0005 34.5 11.4 69 46-118 110-187 (212)
111 cd02068 radical_SAM_B12_BD B12 79.4 18 0.00039 32.6 9.7 105 28-134 3-111 (127)
112 cd04729 NanE N-acetylmannosami 79.4 21 0.00045 35.5 11.0 71 46-119 129-206 (219)
113 cd02072 Glm_B12_BD B12 binding 78.5 37 0.00081 31.7 11.5 101 27-130 13-126 (128)
114 PF01408 GFO_IDH_MocA: Oxidore 78.0 42 0.00091 29.3 11.5 105 18-135 1-111 (120)
115 PRK07239 bifunctional uroporph 76.7 20 0.00044 38.7 10.8 44 207-261 312-355 (381)
116 PRK05718 keto-hydroxyglutarate 74.4 42 0.0009 33.9 11.5 96 33-131 8-105 (212)
117 TIGR02370 pyl_corrinoid methyl 73.9 25 0.00055 34.7 9.8 97 18-118 85-192 (197)
118 cd04730 NPD_like 2-Nitropropan 70.1 54 0.0012 32.6 11.3 98 17-119 80-185 (236)
119 PF05690 ThiG: Thiazole biosyn 69.7 21 0.00045 36.8 8.1 115 18-135 94-225 (247)
120 COG0512 PabA Anthranilate/para 69.4 15 0.00033 36.6 6.9 76 18-97 2-81 (191)
121 PF03602 Cons_hypoth95: Conser 69.2 17 0.00037 35.6 7.3 67 18-86 66-138 (183)
122 PF09936 Methyltrn_RNA_4: SAM- 69.1 46 0.001 33.0 10.1 101 19-124 44-163 (185)
123 PLN02274 inosine-5'-monophosph 68.8 55 0.0012 37.3 12.2 101 16-119 259-380 (505)
124 TIGR03151 enACPred_II putative 68.4 37 0.0008 36.0 10.1 84 33-119 101-190 (307)
125 TIGR00007 phosphoribosylformim 67.8 52 0.0011 32.8 10.6 66 51-118 148-217 (230)
126 PRK05458 guanosine 5'-monophos 67.7 76 0.0016 34.2 12.3 98 19-119 113-230 (326)
127 PTZ00314 inosine-5'-monophosph 67.1 25 0.00054 39.9 9.0 32 88-119 342-373 (495)
128 TIGR02026 BchE magnesium-proto 66.2 64 0.0014 36.4 12.1 107 26-135 21-137 (497)
129 PF07688 KaiA: KaiA domain; I 66.0 32 0.0007 35.8 8.6 114 19-138 2-121 (283)
130 PF01596 Methyltransf_3: O-met 65.9 30 0.00066 34.5 8.4 58 15-72 68-130 (205)
131 COG2022 ThiG Uncharacterized e 64.0 46 0.00099 34.4 9.2 114 18-134 101-231 (262)
132 PRK08385 nicotinate-nucleotide 63.8 46 0.001 35.0 9.6 93 20-117 157-257 (278)
133 TIGR01182 eda Entner-Doudoroff 63.8 67 0.0015 32.3 10.4 92 35-130 3-97 (204)
134 PRK10128 2-keto-3-deoxy-L-rham 63.3 60 0.0013 33.9 10.3 100 32-133 8-112 (267)
135 TIGR01334 modD putative molybd 63.1 21 0.00045 37.5 6.9 95 19-117 158-261 (277)
136 PLN02591 tryptophan synthase 62.0 21 0.00046 36.9 6.6 59 77-135 65-129 (250)
137 cd00564 TMP_TenI Thiamine mono 61.7 51 0.0011 31.2 8.9 69 47-119 102-178 (196)
138 PRK12724 flagellar biosynthesi 61.6 80 0.0017 35.3 11.4 100 16-117 251-365 (432)
139 PF04321 RmlD_sub_bind: RmlD s 60.8 24 0.00052 36.6 6.9 80 18-99 1-102 (286)
140 TIGR03239 GarL 2-dehydro-3-deo 60.7 72 0.0016 32.9 10.3 80 51-132 23-105 (249)
141 cd04724 Tryptophan_synthase_al 60.7 32 0.00069 35.1 7.7 57 78-134 64-126 (242)
142 PRK00278 trpC indole-3-glycero 60.3 1.5E+02 0.0033 30.6 12.6 94 21-118 139-239 (260)
143 PRK06843 inosine 5-monophospha 60.2 87 0.0019 34.8 11.3 101 16-119 164-285 (404)
144 PRK10558 alpha-dehydro-beta-de 60.2 66 0.0014 33.3 9.9 100 32-133 9-113 (256)
145 TIGR02311 HpaI 2,4-dihydroxyhe 59.6 96 0.0021 31.9 11.0 82 50-133 22-106 (249)
146 cd04726 KGPDC_HPS 3-Keto-L-gul 59.4 1.3E+02 0.0027 29.1 11.4 100 16-119 76-186 (202)
147 PRK11840 bifunctional sulfur c 59.0 1.3E+02 0.0029 32.4 12.1 114 18-135 168-299 (326)
148 PLN02871 UDP-sulfoquinovose:DA 58.8 1.2E+02 0.0026 33.4 12.4 105 17-135 290-399 (465)
149 TIGR03088 stp2 sugar transfera 58.8 89 0.0019 32.7 11.0 106 18-135 230-337 (374)
150 PRK05749 3-deoxy-D-manno-octul 58.8 82 0.0018 34.1 10.9 111 17-135 262-387 (425)
151 PRK13587 1-(5-phosphoribosyl)- 58.3 34 0.00073 34.8 7.3 67 51-118 151-220 (234)
152 PF01081 Aldolase: KDPG and KH 57.5 21 0.00046 35.6 5.6 94 34-131 2-98 (196)
153 cd03823 GT1_ExpE7_like This fa 57.5 1.9E+02 0.0041 29.0 12.7 66 64-135 263-328 (359)
154 PRK07896 nicotinate-nucleotide 56.9 83 0.0018 33.4 10.1 94 20-117 173-272 (289)
155 TIGR01037 pyrD_sub1_fam dihydr 56.9 1.1E+02 0.0025 31.7 11.2 58 79-136 223-286 (300)
156 cd03813 GT1_like_3 This family 56.8 1.1E+02 0.0023 34.1 11.6 110 18-136 325-442 (475)
157 PRK05848 nicotinate-nucleotide 56.7 88 0.0019 32.8 10.2 91 20-118 155-256 (273)
158 PRK15484 lipopolysaccharide 1, 56.7 2.2E+02 0.0048 30.5 13.7 109 17-135 224-343 (380)
159 cd00331 IGPS Indole-3-glycerol 56.4 1.6E+02 0.0034 29.1 11.7 77 38-118 118-200 (217)
160 CHL00200 trpA tryptophan synth 56.1 31 0.00067 35.9 6.7 57 78-134 79-141 (263)
161 PRK14098 glycogen synthase; Pr 55.5 1.8E+02 0.0039 32.7 13.2 69 64-135 382-450 (489)
162 TIGR00262 trpA tryptophan synt 54.9 1.4E+02 0.003 30.8 11.3 105 16-120 114-228 (256)
163 cd00381 IMPDH IMPDH: The catal 54.9 75 0.0016 34.0 9.6 99 16-118 105-225 (325)
164 PRK05567 inosine 5'-monophosph 54.9 50 0.0011 37.2 8.7 100 16-119 239-360 (486)
165 PRK13111 trpA tryptophan synth 54.8 37 0.00081 35.2 7.1 57 78-134 76-139 (258)
166 TIGR00262 trpA tryptophan synt 54.6 40 0.00087 34.8 7.3 58 77-134 73-137 (256)
167 PF02254 TrkA_N: TrkA-N domain 54.5 1.3E+02 0.0028 26.1 9.6 92 17-118 21-115 (116)
168 cd04727 pdxS PdxS is a subunit 54.2 72 0.0016 33.7 9.0 60 77-136 181-247 (283)
169 cd03820 GT1_amsD_like This fam 53.8 2.2E+02 0.0048 28.0 12.4 108 17-135 209-318 (348)
170 PF03060 NMO: Nitronate monoox 52.8 89 0.0019 33.3 9.8 84 33-119 128-219 (330)
171 TIGR00566 trpG_papA glutamine 52.7 49 0.0011 32.3 7.2 74 20-97 2-79 (188)
172 cd02065 B12-binding_like B12 b 52.6 1.2E+02 0.0026 26.5 9.2 71 24-96 10-86 (125)
173 cd04962 GT1_like_5 This family 52.2 1.4E+02 0.0031 30.8 11.1 65 64-135 271-335 (371)
174 PF00249 Myb_DNA-binding: Myb- 52.1 30 0.00065 26.0 4.5 45 203-251 2-47 (48)
175 PRK11889 flhF flagellar biosyn 52.1 1.2E+02 0.0026 33.9 10.7 56 16-71 268-328 (436)
176 PF14097 SpoVAE: Stage V sporu 51.0 1.8E+02 0.0039 28.7 10.4 75 20-94 3-86 (180)
177 cd04722 TIM_phosphate_binding 51.0 83 0.0018 29.2 8.3 56 63-118 136-198 (200)
178 PRK12704 phosphodiesterase; Pr 50.6 16 0.00034 41.8 3.8 46 92-137 251-298 (520)
179 PF13941 MutL: MutL protein 50.4 3.5E+02 0.0075 30.7 14.1 129 15-145 74-218 (457)
180 COG0742 N6-adenine-specific me 50.1 31 0.00068 34.3 5.3 53 18-71 67-122 (187)
181 PRK07259 dihydroorotate dehydr 50.0 1.5E+02 0.0033 30.9 10.9 57 79-135 223-285 (301)
182 TIGR01761 thiaz-red thiazoliny 49.9 1.6E+02 0.0034 31.9 11.1 104 16-135 2-113 (343)
183 cd03114 ArgK-like The function 49.7 35 0.00075 32.1 5.4 43 51-99 81-123 (148)
184 PRK00748 1-(5-phosphoribosyl)- 49.6 67 0.0015 31.9 7.8 66 51-118 149-219 (233)
185 PRK06552 keto-hydroxyglutarate 49.1 1.1E+02 0.0024 30.8 9.2 95 34-131 7-106 (213)
186 PRK05703 flhF flagellar biosyn 48.7 1.3E+02 0.0029 33.3 10.6 91 16-107 250-349 (424)
187 TIGR00693 thiE thiamine-phosph 48.5 1E+02 0.0023 29.7 8.8 69 46-118 102-179 (196)
188 cd06533 Glyco_transf_WecG_TagA 48.2 1.1E+02 0.0023 29.5 8.7 76 16-95 45-129 (171)
189 PF00534 Glycos_transf_1: Glyc 48.0 2.1E+02 0.0046 26.1 10.5 109 17-137 47-159 (172)
190 TIGR01305 GMP_reduct_1 guanosi 47.8 68 0.0015 34.8 7.8 66 54-119 112-178 (343)
191 cd04723 HisA_HisF Phosphoribos 47.0 80 0.0017 31.9 7.9 67 50-118 148-217 (233)
192 PF01729 QRPTase_C: Quinolinat 46.4 1E+02 0.0022 29.9 8.3 94 20-117 53-153 (169)
193 PRK10742 putative methyltransf 46.3 1.6E+02 0.0034 30.7 9.9 58 16-76 109-177 (250)
194 cd03819 GT1_WavL_like This fam 46.3 3.3E+02 0.0071 27.7 12.6 66 64-135 264-329 (355)
195 PRK14974 cell division protein 45.5 2.2E+02 0.0048 30.8 11.3 55 16-72 167-231 (336)
196 cd01424 MGS_CPS_II Methylglyox 45.2 1.8E+02 0.0039 25.5 9.1 24 23-46 8-31 (110)
197 PRK06015 keto-hydroxyglutarate 45.1 1.2E+02 0.0027 30.4 8.7 82 46-130 11-93 (201)
198 cd04732 HisA HisA. Phosphorib 45.1 2.3E+02 0.0049 28.1 10.8 67 50-118 148-218 (234)
199 PRK09140 2-dehydro-3-deoxy-6-p 45.1 1.3E+02 0.0029 30.0 9.1 95 34-131 4-101 (206)
200 PRK01911 ppnK inorganic polyph 45.0 2E+02 0.0044 30.4 10.8 101 18-137 1-121 (292)
201 PF02581 TMP-TENI: Thiamine mo 44.5 1.6E+02 0.0035 28.3 9.3 80 34-117 89-175 (180)
202 PLN02591 tryptophan synthase 44.4 2.9E+02 0.0063 28.6 11.6 99 19-120 109-219 (250)
203 PRK12726 flagellar biosynthesi 44.2 2E+02 0.0042 32.1 10.7 57 16-72 233-294 (407)
204 PRK06895 putative anthranilate 43.7 31 0.00066 33.6 4.2 32 17-48 1-32 (190)
205 TIGR01306 GMP_reduct_2 guanosi 43.4 3.3E+02 0.0071 29.4 12.1 98 19-119 110-227 (321)
206 cd03818 GT1_ExpC_like This fam 43.0 3.2E+02 0.007 29.1 12.3 65 65-136 302-366 (396)
207 cd05212 NAD_bind_m-THF_DH_Cycl 43.0 1.2E+02 0.0026 28.5 7.9 59 13-75 24-83 (140)
208 TIGR01302 IMP_dehydrog inosine 42.8 1.8E+02 0.004 32.5 10.6 100 16-119 235-356 (450)
209 PRK03708 ppnK inorganic polyph 42.6 1.5E+02 0.0033 30.9 9.4 100 18-137 1-113 (277)
210 PRK13125 trpA tryptophan synth 42.4 2.4E+02 0.0052 28.7 10.6 90 28-120 116-215 (244)
211 PRK07114 keto-hydroxyglutarate 42.2 2.4E+02 0.0053 28.7 10.5 96 33-131 8-109 (222)
212 PRK13566 anthranilate synthase 42.1 65 0.0014 38.4 7.2 79 15-97 524-605 (720)
213 COG0157 NadC Nicotinate-nucleo 42.1 1.5E+02 0.0033 31.3 9.1 93 19-116 160-259 (280)
214 PF03808 Glyco_tran_WecB: Glyc 42.0 1.6E+02 0.0036 28.2 8.9 77 16-97 47-132 (172)
215 PRK06096 molybdenum transport 41.8 1.8E+02 0.004 30.7 9.8 94 20-117 160-262 (284)
216 COG4122 Predicted O-methyltran 41.8 88 0.0019 31.8 7.2 57 17-74 84-143 (219)
217 cd08187 BDH Butanol dehydrogen 41.7 1.9E+02 0.0042 31.3 10.4 78 17-99 28-137 (382)
218 PRK07649 para-aminobenzoate/an 41.7 30 0.00065 34.1 3.8 74 20-97 2-79 (195)
219 PRK10669 putative cation:proto 41.7 2.1E+02 0.0044 32.8 11.1 51 64-117 482-533 (558)
220 PRK09922 UDP-D-galactose:(gluc 40.3 2.9E+02 0.0062 29.1 11.3 54 78-137 271-325 (359)
221 PRK05581 ribulose-phosphate 3- 40.1 1.3E+02 0.0027 29.6 8.0 56 64-119 132-198 (220)
222 cd00429 RPE Ribulose-5-phospha 40.0 83 0.0018 30.4 6.7 55 64-119 128-194 (211)
223 TIGR03061 pip_yhgE_Nterm YhgE/ 39.6 73 0.0016 30.2 6.0 52 15-69 41-102 (164)
224 TIGR00343 pyridoxal 5'-phospha 39.5 61 0.0013 34.3 5.8 60 77-136 184-250 (287)
225 cd03825 GT1_wcfI_like This fam 39.4 92 0.002 31.8 7.2 75 18-96 1-82 (365)
226 COG0313 Predicted methyltransf 39.4 3E+02 0.0066 29.1 10.8 85 17-104 30-120 (275)
227 TIGR03449 mycothiol_MshA UDP-N 39.0 4.1E+02 0.009 28.1 12.4 107 18-135 253-367 (405)
228 CHL00200 trpA tryptophan synth 39.0 2.5E+02 0.0054 29.3 10.2 101 17-120 119-232 (263)
229 TIGR00735 hisF imidazoleglycer 38.9 2.5E+02 0.0053 28.7 10.1 40 79-118 188-228 (254)
230 TIGR01163 rpe ribulose-phospha 38.8 82 0.0018 30.5 6.4 82 34-119 97-193 (210)
231 cd03804 GT1_wbaZ_like This fam 38.8 3E+02 0.0064 28.5 11.0 103 18-136 222-326 (351)
232 cd03801 GT1_YqgM_like This fam 38.7 3.9E+02 0.0085 26.2 12.3 66 64-136 276-341 (374)
233 TIGR00734 hisAF_rel hisA/hisF 38.7 1.4E+02 0.003 30.1 8.1 67 50-118 143-212 (221)
234 PRK07428 nicotinate-nucleotide 38.3 1.7E+02 0.0038 30.9 9.0 94 19-117 168-269 (288)
235 PRK00994 F420-dependent methyl 38.1 1.5E+02 0.0032 30.9 8.0 80 39-121 29-117 (277)
236 cd08179 NADPH_BDH NADPH-depend 38.0 2.4E+02 0.0053 30.5 10.4 63 18-85 24-100 (375)
237 PLN02781 Probable caffeoyl-CoA 37.9 1.6E+02 0.0035 29.7 8.6 56 17-72 93-153 (234)
238 cd04740 DHOD_1B_like Dihydroor 37.8 3.3E+02 0.0073 28.2 11.1 57 79-135 220-282 (296)
239 PRK06774 para-aminobenzoate sy 37.8 40 0.00088 32.8 4.0 74 20-97 2-79 (191)
240 PRK05286 dihydroorotate dehydr 37.8 2E+02 0.0044 30.9 9.7 56 80-135 277-341 (344)
241 TIGR03128 RuMP_HxlA 3-hexulose 37.6 3.9E+02 0.0085 25.9 11.5 86 30-118 91-185 (206)
242 cd04949 GT1_gtfA_like This fam 37.5 3.3E+02 0.0072 28.3 11.2 54 78-136 292-345 (372)
243 PRK06543 nicotinate-nucleotide 37.5 4.3E+02 0.0093 28.0 11.7 91 19-116 161-262 (281)
244 PRK13609 diacylglycerol glucos 37.4 4.7E+02 0.01 27.6 12.4 104 18-135 231-337 (380)
245 TIGR01163 rpe ribulose-phospha 37.1 2.6E+02 0.0056 27.0 9.6 54 77-130 43-97 (210)
246 PRK09283 delta-aminolevulinic 37.0 82 0.0018 33.9 6.3 65 48-115 225-290 (323)
247 cd03313 enolase Enolase: Enola 36.9 2.1E+02 0.0046 31.6 9.8 105 23-130 209-346 (408)
248 PRK04180 pyridoxal biosynthesi 36.8 78 0.0017 33.6 6.1 60 77-136 190-256 (293)
249 cd03785 GT1_MurG MurG is an N- 36.7 4.9E+02 0.011 26.8 12.5 56 78-135 262-323 (350)
250 cd00452 KDPG_aldolase KDPG and 36.7 2E+02 0.0044 27.9 8.7 77 37-119 93-171 (190)
251 PRK15427 colanic acid biosynth 36.6 5.6E+02 0.012 27.8 13.1 107 18-135 254-369 (406)
252 PRK07028 bifunctional hexulose 36.6 4.5E+02 0.0097 29.0 12.4 102 32-136 98-212 (430)
253 PRK13585 1-(5-phosphoribosyl)- 36.4 4E+02 0.0086 26.6 11.1 78 49-128 150-237 (241)
254 PRK06731 flhF flagellar biosyn 36.4 2.4E+02 0.0052 29.5 9.6 55 17-72 103-163 (270)
255 PLN02823 spermine synthase 36.1 78 0.0017 34.2 6.2 55 17-74 127-187 (336)
256 cd02809 alpha_hydroxyacid_oxid 36.1 3.1E+02 0.0066 28.8 10.5 88 31-121 162-259 (299)
257 COG1091 RfbD dTDP-4-dehydrorha 36.0 2E+02 0.0043 30.5 8.9 78 18-98 1-100 (281)
258 PRK07765 para-aminobenzoate sy 35.9 52 0.0011 33.0 4.5 79 18-97 1-83 (214)
259 TIGR01579 MiaB-like-C MiaB-lik 35.9 2.8E+02 0.006 30.4 10.6 92 28-133 11-107 (414)
260 PRK02083 imidazole glycerol ph 35.8 3.1E+02 0.0067 27.8 10.3 77 52-130 157-244 (253)
261 TIGR00095 RNA methyltransferas 35.8 2.5E+02 0.0053 27.5 9.2 67 19-85 74-143 (189)
262 PRK07695 transcriptional regul 35.7 1.7E+02 0.0038 28.5 8.1 68 46-117 101-175 (201)
263 cd04951 GT1_WbdM_like This fam 35.2 3.5E+02 0.0075 27.5 10.7 105 17-135 219-325 (360)
264 TIGR01305 GMP_reduct_1 guanosi 34.8 3.7E+02 0.008 29.3 10.8 100 17-119 121-241 (343)
265 PRK13143 hisH imidazole glycer 34.8 76 0.0016 31.2 5.4 44 18-69 1-44 (200)
266 PRK02155 ppnK NAD(+)/NADH kina 34.6 3.2E+02 0.0069 28.9 10.3 100 19-137 7-120 (291)
267 PRK04302 triosephosphate isome 34.5 4.8E+02 0.01 26.0 12.6 99 17-119 85-202 (223)
268 PRK00811 spermidine synthase; 34.4 2.7E+02 0.006 28.9 9.8 55 18-75 101-162 (283)
269 PRK00654 glgA glycogen synthas 34.2 5.8E+02 0.013 28.2 12.9 108 17-135 311-427 (466)
270 PF01959 DHQS: 3-dehydroquinat 34.0 4E+02 0.0087 29.2 11.0 71 64-135 97-169 (354)
271 PRK04338 N(2),N(2)-dimethylgua 34.0 2.7E+02 0.0058 30.6 10.0 76 18-100 82-160 (382)
272 TIGR00736 nifR3_rel_arch TIM-b 33.6 1.6E+02 0.0035 30.1 7.7 96 20-118 114-219 (231)
273 PF07652 Flavi_DEAD: Flaviviru 33.5 1.8E+02 0.0038 28.0 7.3 82 16-99 32-135 (148)
274 PRK07807 inosine 5-monophospha 33.2 1.9E+02 0.004 32.9 8.8 101 16-119 238-359 (479)
275 cd04733 OYE_like_2_FMN Old yel 33.1 3.4E+02 0.0075 28.9 10.5 94 24-117 197-319 (338)
276 PRK13125 trpA tryptophan synth 32.3 2.8E+02 0.0061 28.2 9.3 55 80-134 64-126 (244)
277 cd03806 GT1_ALG11_like This fa 31.9 6.7E+02 0.015 27.3 12.8 107 17-135 273-391 (419)
278 PRK05458 guanosine 5'-monophos 31.8 2.8E+02 0.006 30.0 9.4 53 64-117 112-166 (326)
279 cd08185 Fe-ADH1 Iron-containin 31.6 2.3E+02 0.005 30.7 9.0 63 18-85 26-102 (380)
280 PRK14329 (dimethylallyl)adenos 31.5 2.6E+02 0.0056 31.4 9.6 103 18-134 24-139 (467)
281 PF03328 HpcH_HpaI: HpcH/HpaI 31.5 3E+02 0.0066 27.2 9.2 84 48-133 8-106 (221)
282 PRK07107 inosine 5-monophospha 31.4 1.6E+02 0.0035 33.5 8.0 100 16-118 253-380 (502)
283 PLN02316 synthase/transferase 31.1 6.2E+02 0.014 31.7 13.2 56 78-135 933-997 (1036)
284 KOG1562 Spermidine synthase [A 31.1 1.6E+02 0.0035 31.6 7.2 64 19-84 147-216 (337)
285 PRK01581 speE spermidine synth 30.8 2.9E+02 0.0064 30.4 9.5 55 17-74 174-237 (374)
286 TIGR00064 ftsY signal recognit 30.8 3.5E+02 0.0076 28.1 9.8 56 15-72 98-163 (272)
287 TIGR00308 TRM1 tRNA(guanine-26 30.8 3.4E+02 0.0075 29.7 10.1 77 18-100 70-149 (374)
288 PF03102 NeuB: NeuB family; I 30.7 1.5E+02 0.0033 30.4 7.0 85 28-117 56-144 (241)
289 PRK01362 putative translaldola 30.6 2.7E+02 0.0059 28.1 8.7 81 36-120 96-185 (214)
290 PLN02589 caffeoyl-CoA O-methyl 30.6 2.4E+02 0.0053 29.0 8.5 57 16-72 103-165 (247)
291 PF04131 NanE: Putative N-acet 30.5 1.2E+02 0.0026 30.3 5.9 69 42-118 46-117 (192)
292 KOG4175 Tryptophan synthase al 30.5 1.3E+02 0.0029 30.5 6.1 39 90-128 95-139 (268)
293 cd04823 ALAD_PBGS_aspartate_ri 30.4 1.2E+02 0.0026 32.6 6.2 65 49-116 223-288 (320)
294 PF04309 G3P_antiterm: Glycero 30.4 66 0.0014 31.6 4.1 60 51-116 107-166 (175)
295 PRK01231 ppnK inorganic polyph 30.3 5E+02 0.011 27.5 10.9 100 19-137 6-119 (295)
296 PF04131 NanE: Putative N-acet 30.3 3.6E+02 0.0078 27.0 9.2 83 32-119 83-173 (192)
297 PRK11359 cyclic-di-GMP phospho 30.2 3.6E+02 0.0078 31.5 10.9 99 31-132 681-793 (799)
298 PRK02228 V-type ATP synthase s 30.2 2E+02 0.0043 25.4 6.8 75 18-98 1-78 (100)
299 PRK13384 delta-aminolevulinic 30.2 1.2E+02 0.0027 32.5 6.3 64 49-115 227-291 (322)
300 PRK14722 flhF flagellar biosyn 30.1 3.3E+02 0.0072 29.9 9.8 87 18-105 168-262 (374)
301 COG4262 Predicted spermidine s 30.1 1.8E+02 0.0038 32.3 7.4 62 15-78 311-380 (508)
302 cd08194 Fe-ADH6 Iron-containin 30.0 3.5E+02 0.0076 29.2 10.1 76 18-98 24-130 (375)
303 TIGR01361 DAHP_synth_Bsub phos 30.0 3.4E+02 0.0074 28.1 9.5 72 51-123 149-234 (260)
304 cd01573 modD_like ModD; Quinol 29.9 3.3E+02 0.0071 28.5 9.4 94 20-118 155-257 (272)
305 PRK00726 murG undecaprenyldiph 29.9 6.5E+02 0.014 26.2 12.5 55 79-136 263-324 (357)
306 PLN02476 O-methyltransferase 29.6 2.3E+02 0.005 29.9 8.2 56 17-72 143-203 (278)
307 TIGR01306 GMP_reduct_2 guanosi 29.6 3.4E+02 0.0074 29.2 9.6 56 64-119 109-165 (321)
308 PRK04148 hypothetical protein; 29.5 3.3E+02 0.0071 25.7 8.4 58 16-77 16-73 (134)
309 PRK03522 rumB 23S rRNA methylu 29.5 3.6E+02 0.0078 28.4 9.8 77 17-99 195-275 (315)
310 TIGR00696 wecB_tagA_cpsF bacte 29.2 2.4E+02 0.0053 27.5 7.8 61 16-78 47-115 (177)
311 cd04731 HisF The cyclase subun 29.1 2.3E+02 0.005 28.4 8.0 69 48-118 27-99 (243)
312 cd06338 PBP1_ABC_ligand_bindin 29.1 5.3E+02 0.012 26.5 11.0 77 18-98 142-230 (345)
313 PRK13111 trpA tryptophan synth 29.0 6.2E+02 0.014 26.2 11.2 98 20-120 121-229 (258)
314 PLN02274 inosine-5'-monophosph 29.0 1.9E+02 0.0041 33.0 8.0 64 51-118 250-316 (505)
315 cd03808 GT1_cap1E_like This fa 29.0 4.9E+02 0.011 25.6 10.4 52 78-135 277-328 (359)
316 COG0118 HisH Glutamine amidotr 28.9 1.3E+02 0.0028 30.4 5.9 36 18-53 2-37 (204)
317 PRK03659 glutathione-regulated 28.9 2.7E+02 0.0058 32.4 9.4 52 64-118 465-517 (601)
318 PF01993 MTD: methylene-5,6,7, 28.8 1.4E+02 0.0031 31.0 6.2 63 57-122 55-117 (276)
319 PF00532 Peripla_BP_1: Peripla 28.7 1.9E+02 0.0041 29.8 7.4 65 29-99 19-88 (279)
320 PRK13170 hisH imidazole glycer 28.7 1E+02 0.0022 30.2 5.2 67 18-97 1-77 (196)
321 PRK03372 ppnK inorganic polyph 28.6 5.9E+02 0.013 27.1 11.2 100 19-137 7-129 (306)
322 cd00331 IGPS Indole-3-glycerol 28.5 2E+02 0.0042 28.4 7.2 66 68-133 50-117 (217)
323 cd01572 QPRTase Quinolinate ph 28.3 3.7E+02 0.008 28.0 9.4 90 19-117 154-252 (268)
324 cd08181 PPD-like 1,3-propanedi 28.1 4.2E+02 0.0092 28.4 10.2 78 17-99 25-133 (357)
325 KOG1601 GATA-4/5/6 transcripti 28.1 9 0.00019 38.0 -2.4 111 21-133 19-136 (340)
326 smart00426 TEA TEA domain. 28.1 62 0.0013 27.1 2.9 19 203-221 4-22 (68)
327 PRK09860 putative alcohol dehy 28.0 4E+02 0.0086 29.0 10.1 63 18-85 32-107 (383)
328 PRK08007 para-aminobenzoate sy 27.8 69 0.0015 31.2 3.8 74 20-97 2-79 (187)
329 PRK12723 flagellar biosynthesi 27.6 6.4E+02 0.014 27.8 11.6 100 16-117 205-318 (388)
330 PLN02716 nicotinate-nucleotide 27.4 3.5E+02 0.0075 29.1 9.1 98 19-116 172-287 (308)
331 TIGR01425 SRP54_euk signal rec 27.3 6.9E+02 0.015 28.1 11.8 55 16-72 127-191 (429)
332 PRK05637 anthranilate synthase 27.3 1E+02 0.0022 30.8 4.9 75 19-97 3-80 (208)
333 PRK15490 Vi polysaccharide bio 27.2 1E+03 0.022 27.8 13.4 102 18-131 430-533 (578)
334 cd05844 GT1_like_7 Glycosyltra 27.1 6.9E+02 0.015 25.5 13.0 108 17-135 219-335 (367)
335 PF02887 PK_C: Pyruvate kinase 27.1 3.1E+02 0.0066 24.4 7.6 60 64-128 17-78 (117)
336 PRK14949 DNA polymerase III su 27.1 1.5E+02 0.0033 36.3 7.1 72 63-136 119-193 (944)
337 cd01948 EAL EAL domain. This d 27.1 2.2E+02 0.0047 27.6 7.2 89 32-123 136-238 (240)
338 PRK05670 anthranilate synthase 27.0 80 0.0017 30.6 4.1 74 20-97 2-79 (189)
339 cd02801 DUS_like_FMN Dihydrour 27.0 5.4E+02 0.012 25.2 10.1 93 22-116 104-210 (231)
340 PRK01033 imidazole glycerol ph 27.0 2.6E+02 0.0056 28.7 8.0 67 50-117 154-224 (258)
341 cd06304 PBP1_BmpA_like Peripla 26.9 3.5E+02 0.0075 26.8 8.8 68 26-98 13-88 (260)
342 PF07279 DUF1442: Protein of u 26.8 3.3E+02 0.0072 27.8 8.4 74 17-96 69-147 (218)
343 PF00290 Trp_syntA: Tryptophan 26.8 92 0.002 32.5 4.6 58 78-135 74-138 (259)
344 PRK13523 NADPH dehydrogenase N 26.6 3.7E+02 0.008 28.9 9.3 68 50-117 226-302 (337)
345 PRK04457 spermidine synthase; 26.5 3.2E+02 0.0068 28.2 8.5 53 17-72 90-145 (262)
346 cd08176 LPO Lactadehyde:propan 26.5 4.2E+02 0.0091 28.7 9.9 63 18-85 29-104 (377)
347 COG0352 ThiE Thiamine monophos 26.3 3.6E+02 0.0079 27.2 8.7 68 46-117 110-184 (211)
348 PRK13789 phosphoribosylamine-- 26.3 8E+02 0.017 27.2 12.2 61 16-79 3-84 (426)
349 PRK06978 nicotinate-nucleotide 26.2 3.8E+02 0.0082 28.6 9.1 91 19-116 178-274 (294)
350 PRK06843 inosine 5-monophospha 26.2 2.5E+02 0.0055 31.2 8.1 54 63-117 165-220 (404)
351 CHL00101 trpG anthranilate syn 26.1 78 0.0017 30.8 3.8 74 20-97 2-79 (190)
352 cd00532 MGS-like MGS-like doma 26.0 4.1E+02 0.009 23.5 8.2 22 24-45 8-29 (112)
353 cd06296 PBP1_CatR_like Ligand- 25.9 3.1E+02 0.0066 26.9 8.2 65 28-98 16-86 (270)
354 PRK04885 ppnK inorganic polyph 25.9 3.8E+02 0.0083 27.9 9.0 87 18-137 1-94 (265)
355 COG3836 HpcH 2,4-dihydroxyhept 25.9 4.6E+02 0.01 27.3 9.2 91 32-125 7-102 (255)
356 cd04824 eu_ALAD_PBGS_cysteine_ 25.9 1.6E+02 0.0035 31.6 6.2 64 49-115 223-288 (320)
357 cd08170 GlyDH Glycerol dehydro 25.8 3.4E+02 0.0073 29.0 8.9 77 17-98 22-109 (351)
358 PRK10481 hypothetical protein; 25.8 4.1E+02 0.0088 27.2 8.9 76 17-95 129-211 (224)
359 PLN02335 anthranilate synthase 25.7 82 0.0018 31.7 4.0 78 16-97 17-98 (222)
360 TIGR03704 PrmC_rel_meth putati 25.5 6.1E+02 0.013 25.9 10.4 52 17-71 110-161 (251)
361 cd06282 PBP1_GntR_like_2 Ligan 25.5 4.3E+02 0.0093 25.7 9.1 65 29-98 17-87 (266)
362 TIGR01859 fruc_bis_ald_ fructo 25.4 2.2E+02 0.0048 29.9 7.2 83 47-136 152-243 (282)
363 cd04726 KGPDC_HPS 3-Keto-L-gul 25.4 1.8E+02 0.0039 28.0 6.3 71 49-121 11-86 (202)
364 PF10009 DUF2252: Uncharacteri 25.1 27 0.00058 38.4 0.4 21 516-536 37-57 (385)
365 PRK08649 inosine 5-monophospha 25.1 8.6E+02 0.019 26.7 11.9 66 49-118 142-214 (368)
366 cd00384 ALAD_PBGS Porphobilino 25.1 1.9E+02 0.0041 31.1 6.5 64 49-115 218-282 (314)
367 TIGR02149 glgA_Coryne glycogen 25.0 7.9E+02 0.017 25.5 12.2 75 50-135 271-351 (388)
368 PF00497 SBP_bac_3: Bacterial 25.0 2.3E+02 0.005 26.5 6.8 53 15-71 108-160 (225)
369 cd06284 PBP1_LacI_like_6 Ligan 25.0 3.8E+02 0.0082 26.1 8.6 62 29-97 17-84 (267)
370 TIGR02095 glgA glycogen/starch 24.9 7.6E+02 0.017 27.1 11.8 52 78-135 379-436 (473)
371 PF02882 THF_DHG_CYH_C: Tetrah 24.9 1.1E+02 0.0025 29.5 4.6 60 13-76 32-92 (160)
372 PRK14723 flhF flagellar biosyn 24.9 4.3E+02 0.0092 32.0 10.1 101 18-119 216-332 (767)
373 TIGR02085 meth_trns_rumB 23S r 24.9 5.3E+02 0.012 28.0 10.3 88 17-111 255-346 (374)
374 COG0421 SpeE Spermidine syntha 24.8 3.4E+02 0.0073 28.6 8.5 54 19-75 102-161 (282)
375 PRK08072 nicotinate-nucleotide 24.8 4.9E+02 0.011 27.4 9.6 92 19-118 160-259 (277)
376 PRK05567 inosine 5'-monophosph 24.7 2.3E+02 0.005 32.0 7.7 64 51-117 230-295 (486)
377 cd06354 PBP1_BmpA_PnrA_like Pe 24.6 3.7E+02 0.0081 26.8 8.6 65 29-98 20-89 (265)
378 PLN00191 enolase 24.5 4.9E+02 0.011 29.4 10.1 106 23-131 239-379 (457)
379 cd08174 G1PDH-like Glycerol-1- 24.4 3.9E+02 0.0083 28.3 9.0 76 18-98 26-107 (331)
380 PF00478 IMPDH: IMP dehydrogen 24.3 6.9E+02 0.015 27.3 10.8 101 16-119 119-240 (352)
381 PRK13695 putative NTPase; Prov 24.3 4.7E+02 0.01 24.6 8.8 72 62-134 95-172 (174)
382 cd04724 Tryptophan_synthase_al 24.2 4.2E+02 0.009 27.0 8.8 100 16-119 103-215 (242)
383 cd06273 PBP1_GntR_like_1 This 24.0 4.4E+02 0.0096 25.7 8.9 63 29-97 17-85 (268)
384 cd06281 PBP1_LacI_like_5 Ligan 23.9 4.5E+02 0.0097 25.9 9.0 66 28-98 16-87 (269)
385 TIGR00737 nifR3_yhdG putative 23.9 6E+02 0.013 26.7 10.3 95 22-118 112-221 (319)
386 PLN02935 Bifunctional NADH kin 23.9 7.1E+02 0.015 28.7 11.2 101 18-137 195-319 (508)
387 PRK15128 23S rRNA m(5)C1962 me 23.9 2.6E+02 0.0057 30.8 7.8 54 18-71 244-301 (396)
388 cd03798 GT1_wlbH_like This fam 23.9 7.1E+02 0.015 24.6 10.5 53 78-136 292-344 (377)
389 PRK08649 inosine 5-monophospha 23.9 3.3E+02 0.0071 29.9 8.4 99 16-118 153-284 (368)
390 PRK07455 keto-hydroxyglutarate 23.7 5.4E+02 0.012 25.2 9.2 89 34-125 6-97 (187)
391 PRK07764 DNA polymerase III su 23.6 2.2E+02 0.0047 34.7 7.5 72 63-136 120-194 (824)
392 PF00977 His_biosynth: Histidi 23.6 2.7E+02 0.0059 28.0 7.3 69 49-118 148-219 (229)
393 PRK10060 RNase II stability mo 23.6 5.4E+02 0.012 30.0 10.7 102 29-133 542-657 (663)
394 cd08551 Fe-ADH iron-containing 23.5 4.5E+02 0.0097 28.2 9.4 77 18-99 24-131 (370)
395 PRK10415 tRNA-dihydrouridine s 23.4 5.1E+02 0.011 27.6 9.6 96 20-117 112-222 (321)
396 PRK10416 signal recognition pa 23.4 5.8E+02 0.013 27.2 10.1 56 15-72 140-205 (318)
397 COG0134 TrpC Indole-3-glycerol 23.3 4.5E+02 0.0099 27.4 8.9 85 30-119 145-236 (254)
398 PRK03612 spermidine synthase; 23.3 3.6E+02 0.0079 30.8 9.0 55 18-75 322-385 (521)
399 cd08171 GlyDH-like2 Glycerol d 23.3 4.3E+02 0.0094 28.2 9.2 77 17-98 22-110 (345)
400 PRK10867 signal recognition pa 23.2 6.9E+02 0.015 28.0 10.9 54 17-72 129-192 (433)
401 PF01564 Spermine_synth: Sperm 23.1 1.2E+02 0.0026 31.0 4.7 58 17-78 100-165 (246)
402 PRK05096 guanosine 5'-monophos 23.1 3E+02 0.0065 30.0 7.7 53 63-116 122-176 (346)
403 PRK03562 glutathione-regulated 23.0 4.2E+02 0.0092 30.9 9.6 91 17-117 423-516 (621)
404 TIGR00642 mmCoA_mut_beta methy 23.0 6.2E+02 0.013 29.8 10.8 97 31-132 513-614 (619)
405 PRK15320 transcriptional activ 22.9 2.6E+02 0.0057 28.5 6.7 98 19-119 3-102 (251)
406 cd06346 PBP1_ABC_ligand_bindin 22.8 8.3E+02 0.018 24.9 12.4 76 19-98 139-226 (312)
407 TIGR00078 nadC nicotinate-nucl 22.6 5E+02 0.011 27.0 9.2 91 19-118 150-249 (265)
408 TIGR01319 glmL_fam conserved h 22.6 1.2E+03 0.025 26.6 12.4 129 15-145 70-214 (463)
409 PF00218 IGPS: Indole-3-glycer 22.5 3.7E+02 0.0079 28.0 8.1 87 30-119 147-238 (254)
410 TIGR03499 FlhF flagellar biosy 22.5 2.4E+02 0.0052 29.4 6.8 53 18-71 225-280 (282)
411 cd05013 SIS_RpiR RpiR-like pro 22.4 5.2E+02 0.011 22.5 9.2 83 19-102 15-99 (139)
412 cd06292 PBP1_LacI_like_10 Liga 22.4 3.9E+02 0.0083 26.3 8.1 68 28-98 16-91 (273)
413 cd01568 QPRTase_NadC Quinolina 22.4 2.3E+02 0.0049 29.5 6.6 94 19-118 153-254 (269)
414 cd08182 HEPD Hydroxyethylphosp 22.4 4.3E+02 0.0094 28.4 9.0 63 18-85 24-96 (367)
415 cd00405 PRAI Phosphoribosylant 22.3 3.9E+02 0.0086 26.0 8.0 51 63-116 120-178 (203)
416 PRK00025 lpxB lipid-A-disaccha 22.3 8.8E+02 0.019 25.4 11.3 23 114-136 319-341 (380)
417 COG4148 ModC ABC-type molybdat 22.2 1.4E+02 0.0031 32.0 4.9 68 30-99 115-188 (352)
418 cd03811 GT1_WabH_like This fam 22.2 7.4E+02 0.016 24.2 11.0 51 78-134 277-327 (353)
419 TIGR02082 metH 5-methyltetrahy 22.1 6.7E+02 0.014 31.9 11.5 104 17-122 732-848 (1178)
420 COG0159 TrpA Tryptophan syntha 22.1 2.6E+02 0.0057 29.4 6.9 60 79-138 82-148 (265)
421 cd04736 MDH_FMN Mandelate dehy 22.0 4E+02 0.0088 29.2 8.6 88 31-121 226-321 (361)
422 PRK14994 SAM-dependent 16S rib 22.0 2.5E+02 0.0053 29.7 6.8 89 18-109 38-132 (287)
423 cd03316 MR_like Mandelate race 22.0 3E+02 0.0065 29.2 7.6 46 79-124 229-275 (357)
424 PRK02290 3-dehydroquinate synt 22.0 8E+02 0.017 26.8 10.6 69 64-134 89-159 (344)
425 PRK01372 ddl D-alanine--D-alan 21.8 1.7E+02 0.0036 30.2 5.5 53 16-70 3-63 (304)
426 TIGR01302 IMP_dehydrog inosine 21.8 3E+02 0.0065 30.8 7.8 54 63-117 236-291 (450)
427 PRK10423 transcriptional repre 21.8 3.9E+02 0.0085 27.2 8.2 64 29-97 74-143 (327)
428 COG0626 MetC Cystathionine bet 21.7 8.4E+02 0.018 27.1 11.1 100 15-117 100-205 (396)
429 PRK06806 fructose-bisphosphate 21.7 3.3E+02 0.0072 28.6 7.7 70 47-118 152-229 (281)
430 TIGR01303 IMP_DH_rel_1 IMP deh 21.6 3E+02 0.0065 31.2 7.8 66 49-117 225-292 (475)
431 COG2109 BtuR ATP:corrinoid ade 21.6 3E+02 0.0065 27.7 6.8 47 63-109 122-173 (198)
432 TIGR01133 murG undecaprenyldip 21.6 8.8E+02 0.019 24.8 12.6 56 79-136 261-321 (348)
433 cd06275 PBP1_PurR Ligand-bindi 21.6 5.1E+02 0.011 25.3 8.8 66 29-99 17-88 (269)
434 PF11072 DUF2859: Protein of u 21.5 5.1E+02 0.011 24.7 8.1 69 18-95 63-136 (142)
435 PRK15454 ethanol dehydrogenase 21.5 4E+02 0.0086 29.2 8.6 63 18-85 50-125 (395)
436 cd01541 PBP1_AraR Ligand-bindi 21.4 5.1E+02 0.011 25.5 8.8 68 28-98 16-91 (273)
437 cd02810 DHOD_DHPD_FMN Dihydroo 21.4 6.1E+02 0.013 26.0 9.6 38 79-116 230-269 (289)
438 cd00956 Transaldolase_FSA Tran 21.3 4.7E+02 0.01 26.2 8.4 46 75-120 137-186 (211)
439 PRK06512 thiamine-phosphate py 21.3 6.1E+02 0.013 25.6 9.3 66 48-117 119-190 (221)
440 PLN02275 transferase, transfer 21.3 9.9E+02 0.022 25.3 11.7 102 17-133 261-370 (371)
441 cd02803 OYE_like_FMN_family Ol 21.2 6E+02 0.013 26.5 9.6 41 77-117 268-308 (327)
442 cd03807 GT1_WbnK_like This fam 21.2 8.1E+02 0.017 24.2 11.1 63 65-136 270-332 (365)
443 TIGR02855 spore_yabG sporulati 21.1 6.6E+02 0.014 26.7 9.5 104 12-120 100-226 (283)
444 COG2070 Dioxygenases related t 21.1 4.7E+02 0.01 28.3 8.8 77 37-116 123-210 (336)
445 PRK06559 nicotinate-nucleotide 21.1 1E+03 0.022 25.3 11.2 91 19-116 169-266 (290)
446 PF06283 ThuA: Trehalose utili 21.0 2.4E+02 0.0051 27.8 6.2 74 19-97 1-88 (217)
447 TIGR03569 NeuB_NnaB N-acetylne 20.9 3.7E+02 0.0081 29.0 8.0 78 27-109 75-152 (329)
448 TIGR00735 hisF imidazoleglycer 20.8 5.1E+02 0.011 26.4 8.7 71 48-119 30-103 (254)
449 TIGR02990 ectoine_eutA ectoine 20.7 4.6E+02 0.01 26.8 8.4 75 18-94 121-210 (239)
450 PLN02898 HMP-P kinase/thiamin- 20.7 4.5E+02 0.0097 29.7 9.0 65 46-114 396-467 (502)
451 TIGR03572 WbuZ glycosyl amidat 20.7 4.3E+02 0.0093 26.3 8.1 69 48-118 30-102 (232)
452 PRK14099 glycogen synthase; Pr 20.7 9.4E+02 0.02 27.0 11.6 22 113-134 421-442 (485)
453 cd03799 GT1_amsK_like This is 20.7 8.7E+02 0.019 24.4 11.5 53 78-136 275-327 (355)
454 cd03812 GT1_CapH_like This fam 20.7 8.9E+02 0.019 24.5 11.4 65 64-136 267-331 (358)
455 cd06318 PBP1_ABC_sugar_binding 20.6 6.3E+02 0.014 24.9 9.3 64 29-97 17-87 (282)
456 TIGR01304 IMP_DH_rel_2 IMP deh 20.6 4.7E+02 0.01 28.7 8.8 100 16-118 154-283 (369)
457 PRK09016 quinolinate phosphori 20.5 9.5E+02 0.021 25.6 10.8 91 20-117 182-278 (296)
458 TIGR03765 ICE_PFL_4695 integra 20.4 5.5E+02 0.012 23.3 7.6 69 19-96 26-99 (105)
459 COG2200 Rtn c-di-GMP phosphodi 20.3 8.4E+02 0.018 24.9 10.2 114 15-131 119-250 (256)
460 PRK10909 rsmD 16S rRNA m(2)G96 20.3 6.8E+02 0.015 24.8 9.2 77 18-99 77-160 (199)
461 COG1748 LYS9 Saccharopine dehy 20.2 4.3E+02 0.0093 29.3 8.4 93 18-118 2-97 (389)
462 cd01575 PBP1_GntR Ligand-bindi 20.1 4.1E+02 0.0089 25.8 7.7 63 29-97 17-85 (268)
463 cd02930 DCR_FMN 2,4-dienoyl-Co 20.1 5.4E+02 0.012 27.6 9.1 92 26-117 187-303 (353)
464 COG2265 TrmA SAM-dependent met 20.1 6.6E+02 0.014 28.2 10.0 82 16-99 314-397 (432)
465 PRK00955 hypothetical protein; 20.1 4.1E+02 0.0089 31.3 8.6 106 24-134 26-178 (620)
No 1
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.91 E-value=1.1e-23 Score=211.46 Aligned_cols=202 Identities=24% Similarity=0.403 Sum_probs=152.8
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc--cCCCCEEE
Q 007940 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGL--EMDLPVIM 95 (584)
Q Consensus 18 mrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~--~~~iPVIv 95 (584)
++||||||++..++.|...|+..||.|..+.++.+|++.+.. . ||+||+|++||+|||+++|++||. ....||||
T Consensus 1 ~~ILiveDd~~i~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~--~-~dlviLD~~lP~~dG~~~~~~iR~~~~~~~PIi~ 77 (229)
T COG0745 1 MRILLVEDDPELAELLKEYLEEEGYEVDVAADGEEALEAARE--Q-PDLVLLDLMLPDLDGLELCRRLRAKKGSGPPIIV 77 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--C-CCEEEEECCCCCCCHHHHHHHHHhhcCCCCcEEE
Confidence 589999999999999999999999999999999999999876 3 999999999999999999999984 36789999
Q ss_pred EEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHhcchhhhhhhhhhhhhhhhccccCCCCCCCCCcccccchh
Q 007940 96 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIHEVRDIENIEGFESIHMTRSGSDQSVDGPLLTGEDLT 175 (584)
Q Consensus 96 lSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrrk~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ll~gedl~ 175 (584)
+|+..+....+.++++||||||+|||++.||.++++.++++... .. .......+...++.
T Consensus 78 Lta~~~~~d~v~gl~~GADDYl~KPf~~~EL~ARi~a~lRR~~~-~~-------------------~~~~~~~~~~g~l~ 137 (229)
T COG0745 78 LTARDDEEDRVLGLEAGADDYLTKPFSPRELLARLRALLRRNAG-AS-------------------RAEASEVLVFGDLT 137 (229)
T ss_pred EECCCcHHHHHHHHhCcCCeeeeCCCCHHHHHHHHHHHHCcCcC-cc-------------------cccccceeEECCEE
Confidence 99999999999999999999999999999999999999987532 00 00011112222222
Q ss_pred hHHhhhcccccCCCCCCCCCCcccccccccchhHHHHHHHHHHHhcccccCHHHHHhhhCCCCCchHHHHhhhHHHHHHH
Q 007940 176 SVRKRKDAENRHDDRDCGDASSTKKARVVWSIDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYL 255 (584)
Q Consensus 176 ~~~~Rk~~~~~~~d~~~~~~ss~KK~rvvws~eLhqkFv~av~~iG~s~~~Pk~Il~~m~v~~Lt~~~V~sHlqkyr~~~ 255 (584)
....++.+..++... ..+.++ .++...|+++.++ ..++.+|+ +..|.....+..+ ..+.|+
T Consensus 138 id~~~~~v~~~~~~i----~Lt~~E------f~lL~~L~~~~g~----v~sR~~L~---~~vw~~~~~~~~r--tvdvhI 198 (229)
T COG0745 138 LDPDTRTVTLNGREL----TLTPKE------FELLELLARHPGR----VLSREQLL---EAVWGYDFEVDSR--TVDVHI 198 (229)
T ss_pred EEcCcCEEEECCEEe----cCChHH------HHHHHHHHhCCCc----cCCHHHHH---HHhcCCCCCCCcc--CHHHHH
Confidence 222233232221111 134555 6677777777774 78899888 5567665554443 366777
Q ss_pred Hhhhhh
Q 007940 256 TRLQKD 261 (584)
Q Consensus 256 ~RL~~~ 261 (584)
+||++|
T Consensus 199 ~rLR~K 204 (229)
T COG0745 199 SRLRKK 204 (229)
T ss_pred HHHHHH
Confidence 888877
No 2
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.84 E-value=1.9e-20 Score=196.62 Aligned_cols=221 Identities=24% Similarity=0.354 Sum_probs=161.0
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhCC--CeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCCEEE
Q 007940 18 LRVLVVDDDLAWLKILEKMLKKCS--YEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIM 95 (584)
Q Consensus 18 mrVLIVDDd~~~r~~L~~lL~~~g--y~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVIv 95 (584)
+|||||||.+.+|+.|+++|...+ ..|.++.++.+|++++.+.. ||+|++|++||.|||+++++.|.....+||||
T Consensus 2 irVlvVddsal~R~~i~~~l~~~~~i~vv~~a~ng~~a~~~~~~~~--PDVi~ld~emp~mdgl~~l~~im~~~p~pVim 79 (350)
T COG2201 2 IRVLVVDDSALMRKVISDILNSDPDIEVVGTARNGREAIDKVKKLK--PDVITLDVEMPVMDGLEALRKIMRLRPLPVIM 79 (350)
T ss_pred cEEEEEcCcHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcC--CCEEEEecccccccHHHHHHHHhcCCCCcEEE
Confidence 799999999999999999999999 45669999999999999865 99999999999999999999998779999999
Q ss_pred EEcCC--ChHHHHhhhhcCCceEEeCCCCH--HHHHHHHHHHHHhcchhhhhhhhhhhhhhhhccccCCCCCCCCCcccc
Q 007940 96 MSVDG--ETSRVMKGVQHGACDYLLKPIRM--KELRNIWQHVFRKKIHEVRDIENIEGFESIHMTRSGSDQSVDGPLLTG 171 (584)
Q Consensus 96 lSa~~--d~~~~~~aL~~GAdDYL~KP~~~--~eL~~aI~~vlrrk~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ll~g 171 (584)
+++.. ..+...+|+++||.||+.||... ..+...-+ .+..++........ .. . +.. ..
T Consensus 80 vsslt~~g~~~t~~al~~gAvD~i~kp~~~i~~~~~~~~~-~l~~kv~~~~~~~~----~~--l-~~~------~~---- 141 (350)
T COG2201 80 VSSLTEEGAEATLEALELGAVDFIAKPSGGISLGLDEVAE-LLIEKVRAAARQNR----KS--L-RTP------EP---- 141 (350)
T ss_pred EeccccccHHHHHHHHhcCcceeecCCCcccccchHHHHH-HHHHHHHHHhhccc----cc--c-ccc------CC----
Confidence 98753 36778999999999999999853 22222222 11111100000000 00 0 000 00
Q ss_pred cchhhHHhhhcccccCCCCCCCCCCcccccccccchhHHHHHHHHHHHhcccccCHHHHHhhhCCCCCchHH-----HHh
Q 007940 172 EDLTSVRKRKDAENRHDDRDCGDASSTKKARVVWSIDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTREN-----VAS 246 (584)
Q Consensus 172 edl~~~~~Rk~~~~~~~d~~~~~~ss~KK~rvvws~eLhqkFv~av~~iG~s~~~Pk~Il~~m~v~~Lt~~~-----V~s 246 (584)
.+......+ .. ... -..+..||++++||.+|..++ ..++.+. |+|
T Consensus 142 -------~~~~~~~~~-------~~-~~~-------------~~~iV~IGaStGGp~AL~~il--~~lP~~~p~pvvIvQ 191 (350)
T COG2201 142 -------PRAPAFRPV-------KP-GPA-------------ARKIVAIGASTGGPAALRAVL--PALPADFPAPVVIVQ 191 (350)
T ss_pred -------CCccccCCC-------CC-CCC-------------CccEEEEEeCCCCHHHHHHHH--HhCCCCCCCCEEEEe
Confidence 000000000 00 000 123677899999999999999 7777776 899
Q ss_pred hhHH--HHHHHHhhhhh---hhhhccCCCccCCCCCCCCCCcccccc
Q 007940 247 HLQK--YRLYLTRLQKD---ELKTSVGGIKQKDSPSKDSAASFGIQN 288 (584)
Q Consensus 247 Hlqk--yr~~~~RL~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~ 288 (584)
||+. ++.+++||+.. .++++++|+..+++..+.-+|+|.+.-
T Consensus 192 HMp~gFt~s~a~~L~~~s~l~Vkeaedg~~~~~G~vyvapg~~hl~v 238 (350)
T COG2201 192 HMPPGFTASFADRLNRLSQLPVKEAEDGERLEPGHVYVAPGDYHLEV 238 (350)
T ss_pred cCChhhhHHHHHHHhhhcCcceeEccCCCcccCCeEEEecCCceEEE
Confidence 9999 79999999988 899999999999998888888666443
No 3
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.81 E-value=1.7e-19 Score=196.02 Aligned_cols=119 Identities=37% Similarity=0.615 Sum_probs=112.4
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCCEEE
Q 007940 17 GLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGL-EMDLPVIM 95 (584)
Q Consensus 17 gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~-~~~iPVIv 95 (584)
..+||||||++.+|..++.+|+..||.|.++.++.+|++++... .||+||+|+.||+|||+++++.++. .+.+|||+
T Consensus 4 ~~~iLvVDDd~~ir~~l~~~L~~~G~~v~~a~~~~~al~~i~~~--~~~lvl~Di~mp~~~Gl~ll~~i~~~~~~~pVI~ 81 (464)
T COG2204 4 MARILVVDDDPDIRELLEQALELAGYEVVTAESAEEALEALSES--PFDLVLLDIRMPGMDGLELLKEIKSRDPDLPVIV 81 (464)
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcC--CCCEEEEecCCCCCchHHHHHHHHhhCCCCCEEE
Confidence 45799999999999999999999999999999999999999876 4999999999999999999999964 47999999
Q ss_pred EEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHhc
Q 007940 96 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 137 (584)
Q Consensus 96 lSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrrk 137 (584)
||++++.+.+++|++.||.|||.|||+.++|..++++++..+
T Consensus 82 ~Tg~g~i~~AV~A~k~GA~Dfl~KP~~~~~L~~~v~ral~~~ 123 (464)
T COG2204 82 MTGHGDIDTAVEALRLGAFDFLEKPFDLDRLLAIVERALELR 123 (464)
T ss_pred EeCCCCHHHHHHHHhcCcceeeeCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999998764
No 4
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=99.81 E-value=1.1e-19 Score=174.97 Aligned_cols=169 Identities=21% Similarity=0.308 Sum_probs=133.1
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCCE
Q 007940 15 PAGLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGL-EMDLPV 93 (584)
Q Consensus 15 p~gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~-~~~iPV 93 (584)
+...-|-|||||..+|+.+..+|+..||.|.++.++.+.|..... ..|.++|+|+.||+|+|+++.+++.. ...+||
T Consensus 2 ~~~~~V~vVDDD~~vr~al~~Ll~s~G~~v~~~~s~~~fL~~~~~--~~pGclllDvrMPg~sGlelq~~L~~~~~~~PV 79 (202)
T COG4566 2 PREPLVHVVDDDESVRDALAFLLESAGFQVKCFASAEEFLAAAPL--DRPGCLLLDVRMPGMSGLELQDRLAERGIRLPV 79 (202)
T ss_pred CCCCeEEEEcCcHHHHHHHHHHHHhCCceeeeecCHHHHHhhccC--CCCCeEEEecCCCCCchHHHHHHHHhcCCCCCE
Confidence 345679999999999999999999999999999999999998543 44899999999999999999999964 468999
Q ss_pred EEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHhcchhhhhhhhhhhhhhhhccccCCCCCCCCCcccccc
Q 007940 94 IMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIHEVRDIENIEGFESIHMTRSGSDQSVDGPLLTGED 173 (584)
Q Consensus 94 IvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrrk~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ll~ged 173 (584)
|++|++++..+.++|++.||.|||.|||+...|..++++++++.....................++++.++.+.++.|..
T Consensus 80 IfiTGhgDIpmaV~AmK~GAvDFLeKP~~~q~Lldav~~Al~~~~~~~~~~~~~~~~~~~l~tLT~RERqVl~~vV~G~~ 159 (202)
T COG4566 80 IFLTGHGDIPMAVQAMKAGAVDFLEKPFSEQDLLDAVERALARDASRRAEADRQAAIRARLATLTPRERQVLDLVVRGLM 159 (202)
T ss_pred EEEeCCCChHHHHHHHHcchhhHHhCCCchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHcCcc
Confidence 99999999999999999999999999999999999999998774433332222222222223344555566566666666
Q ss_pred hhhHHhhhcccc
Q 007940 174 LTSVRKRKDAEN 185 (584)
Q Consensus 174 l~~~~~Rk~~~~ 185 (584)
.+.++.--.++.
T Consensus 160 NKqIA~dLgiS~ 171 (202)
T COG4566 160 NKQIAFDLGISE 171 (202)
T ss_pred cHHHHHHcCCch
Confidence 666655544433
No 5
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=99.79 E-value=3.5e-18 Score=167.35 Aligned_cols=119 Identities=25% Similarity=0.492 Sum_probs=109.1
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhCC-CeEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc-CCCCEE
Q 007940 18 LRVLVVDDDLAWLKILEKMLKKCS-YEVT-TCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLE-MDLPVI 94 (584)
Q Consensus 18 mrVLIVDDd~~~r~~L~~lL~~~g-y~V~-~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~-~~iPVI 94 (584)
++|||||||+.+.++-+.+++... |.++ +|.+.++|...+++.+ |||||+|+.||+.+|++++..++.. ..+-||
T Consensus 1 i~VLIiEDD~mVaeih~~yv~~~~gF~~vg~A~~~~ea~~~i~~~~--pDLILLDiYmPd~~Gi~lL~~ir~~~~~~DVI 78 (224)
T COG4565 1 INVLIIEDDPMVAEIHRRYVKQIPGFSVVGTAGTLEEAKMIIEEFK--PDLILLDIYMPDGNGIELLPELRSQHYPVDVI 78 (224)
T ss_pred CcEEEEcCchHHHHHHHHHHHhCCCceEEEeeccHHHHHHHHHhhC--CCEEEEeeccCCCccHHHHHHHHhcCCCCCEE
Confidence 589999999999999999999874 6654 9999999999999865 8999999999999999999999754 578899
Q ss_pred EEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHhcc
Q 007940 95 MMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKI 138 (584)
Q Consensus 95 vlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrrk~ 138 (584)
++|+..+.+.+.+|++.||.|||+|||..++|..++.+..+++.
T Consensus 79 ~iTAA~d~~tI~~alr~Gv~DYLiKPf~~eRl~~aL~~y~~~r~ 122 (224)
T COG4565 79 VITAASDMETIKEALRYGVVDYLIKPFTFERLQQALTRYRQKRH 122 (224)
T ss_pred EEeccchHHHHHHHHhcCchhheecceeHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999877654
No 6
>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
Probab=99.76 E-value=3e-18 Score=186.12 Aligned_cols=117 Identities=34% Similarity=0.527 Sum_probs=108.1
Q ss_pred CEEEEEeCCHHHHHHHHHHHH--hCCCeEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCCE
Q 007940 18 LRVLVVDDDLAWLKILEKMLK--KCSYEVT-TCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGL-EMDLPV 93 (584)
Q Consensus 18 mrVLIVDDd~~~r~~L~~lL~--~~gy~V~-~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~-~~~iPV 93 (584)
++||||||++.+|+.|+.++. .+|++|+ +|.+|.+|++.+++.. |||||+||.||+|||+++++.++. .+.+.+
T Consensus 2 ykVlIVDDE~lIr~GLk~lI~w~~~g~eiVgtA~NG~eAleli~e~~--pDiviTDI~MP~mdGLdLI~~ike~~p~~~~ 79 (475)
T COG4753 2 YKVLIVDDEPLIREGLKSLIDWEALGIEVVGTAANGKEALELIQETQ--PDIVITDINMPGMDGLDLIKAIKEQSPDTEF 79 (475)
T ss_pred eeEEEecChHHHHHHHHHhCChhhcCCeEEEecccHHHHHHHHHhcC--CCEEEEecCCCCCcHHHHHHHHHHhCCCceE
Confidence 589999999999999999985 5577765 9999999999999865 999999999999999999999975 478899
Q ss_pred EEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 007940 94 IMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 136 (584)
Q Consensus 94 IvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrr 136 (584)
|++|+..+.+++.+|+++|+.|||+||++..+|..++.++..+
T Consensus 80 IILSGy~eFeYak~Am~lGV~dYLLKP~~k~eL~~~L~ki~~k 122 (475)
T COG4753 80 IILSGYDEFEYAKKAMKLGVKDYLLKPVDKAELEEALKKIIGK 122 (475)
T ss_pred EEEeccchhHHHHHHHhcCchhheeCcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988765
No 7
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=99.73 E-value=9e-17 Score=155.55 Aligned_cols=118 Identities=20% Similarity=0.406 Sum_probs=109.5
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCCEEEE
Q 007940 17 GLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMM 96 (584)
Q Consensus 17 gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVIvl 96 (584)
.++||||||++..+..+...|+..||.|..+.++.+|+..+... .||+||+|+.||+++|+++++.++....+|+|++
T Consensus 2 ~~~iLlv~d~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~--~~dlvild~~l~~~~g~~~~~~lr~~~~~~ii~l 79 (221)
T PRK10766 2 SYHILVVEDEPVTRARLQGYFEQEGYTVSEAASGAGMREIMQNQ--HVDLILLDINLPGEDGLMLTRELRSRSTVGIILV 79 (221)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHhCCCCCEEEE
Confidence 36899999999999999999999999999999999999988764 4999999999999999999999987778999999
Q ss_pred EcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 007940 97 SVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 136 (584)
Q Consensus 97 Sa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrr 136 (584)
++..+......++++||+||+.||+...+|...+..++++
T Consensus 80 ~~~~~~~~~~~~l~~Ga~d~l~kP~~~~~L~~~i~~~~~r 119 (221)
T PRK10766 80 TGRTDSIDRIVGLEMGADDYVTKPLELRELLVRVKNLLWR 119 (221)
T ss_pred ECCCcHHHHHHHHHcCCCcEEeCCCCHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999888765
No 8
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=99.73 E-value=6.4e-17 Score=157.07 Aligned_cols=117 Identities=28% Similarity=0.447 Sum_probs=108.6
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc-CCCCEEEE
Q 007940 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLE-MDLPVIMM 96 (584)
Q Consensus 18 mrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~-~~iPVIvl 96 (584)
|+||||||++..+..+...|+..|+.|..+.++.+|+..+.... ||+||+|+.||+++|+++++.++.. +.+|+|++
T Consensus 1 m~iLlv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~~~--~dlvild~~l~~~~g~~l~~~lr~~~~~~pii~l 78 (223)
T PRK10816 1 MRVLVVEDNALLRHHLKVQLQDAGHQVDAAEDAKEADYYLNEHL--PDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVL 78 (223)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhhCC--CCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 58999999999999999999999999999999999999887644 9999999999999999999999754 68999999
Q ss_pred EcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 007940 97 SVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 136 (584)
Q Consensus 97 Sa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrr 136 (584)
++..+......+++.||++|+.||++..+|...++.++++
T Consensus 79 s~~~~~~~~~~~l~~Ga~d~l~kp~~~~eL~~~i~~~~~~ 118 (223)
T PRK10816 79 TARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR 118 (223)
T ss_pred EcCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999888765
No 9
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=99.73 E-value=7e-17 Score=140.41 Aligned_cols=110 Identities=37% Similarity=0.652 Sum_probs=103.8
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCC-eEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc-CCCCEEEEE
Q 007940 20 VLVVDDDLAWLKILEKMLKKCSY-EVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLE-MDLPVIMMS 97 (584)
Q Consensus 20 VLIVDDd~~~r~~L~~lL~~~gy-~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~-~~iPVIvlS 97 (584)
||||||++..++.++..|+..|+ .|..+.++.+|++.++... ||+||+|+.||+++|+++++.|+.. +.+|+|++|
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~~~~~v~~~~~~~~~~~~~~~~~--~d~iiid~~~~~~~~~~~~~~i~~~~~~~~ii~~t 78 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERAGYEEVTTASSGEEALELLKKHP--PDLIIIDLELPDGDGLELLEQIRQINPSIPIIVVT 78 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHST--ESEEEEESSSSSSBHHHHHHHHHHHTTTSEEEEEE
T ss_pred cEEEECCHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHhcccC--ceEEEEEeeeccccccccccccccccccccEEEec
Confidence 79999999999999999999999 9999999999999998865 9999999999999999999999754 589999999
Q ss_pred cCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHH
Q 007940 98 VDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQ 131 (584)
Q Consensus 98 a~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~ 131 (584)
...+.....+++++||++||.||++.++|.++++
T Consensus 79 ~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~ 112 (112)
T PF00072_consen 79 DEDDSDEVQEALRAGADDYLSKPFSPEELRAAIN 112 (112)
T ss_dssp SSTSHHHHHHHHHTTESEEEESSSSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHhhC
Confidence 9999999999999999999999999999998874
No 10
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=99.73 E-value=1e-16 Score=155.61 Aligned_cols=117 Identities=28% Similarity=0.428 Sum_probs=108.4
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCCEEEEE
Q 007940 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMS 97 (584)
Q Consensus 18 mrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVIvlS 97 (584)
++||||||++..+..+...|+..|+.+..+.++.+++..+... .||+||+|+.||+++|+++++.++....+|+|+++
T Consensus 2 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~--~~dlvild~~l~~~~g~~~~~~lr~~~~~pvi~lt 79 (225)
T PRK10529 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATR--KPDLIILDLGLPDGDGIEFIRDLRQWSAIPVIVLS 79 (225)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHcCCCCCEEEEE
Confidence 4899999999999999999999999999999999999887654 39999999999999999999999877789999999
Q ss_pred cCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 007940 98 VDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 136 (584)
Q Consensus 98 a~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrr 136 (584)
+..+.....+++++||++||.||+...+|...++.++++
T Consensus 80 ~~~~~~~~~~~~~~ga~~~l~kP~~~~~l~~~i~~~~~~ 118 (225)
T PRK10529 80 ARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118 (225)
T ss_pred CCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999887765
No 11
>PRK11173 two-component response regulator; Provisional
Probab=99.73 E-value=1.3e-16 Score=157.06 Aligned_cols=119 Identities=21% Similarity=0.406 Sum_probs=110.2
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCCEEEE
Q 007940 17 GLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMM 96 (584)
Q Consensus 17 gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVIvl 96 (584)
..+||||||++..+..+...|+..|+.|..+.++.+++..+... .||+||+|+.||+++|+++++.++....+|+|++
T Consensus 3 ~~~iLiv~dd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~--~~dlvild~~l~~~~g~~~~~~lr~~~~~pii~l 80 (237)
T PRK11173 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEN--DINLVIMDINLPGKNGLLLARELREQANVALMFL 80 (237)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhhC--CCCEEEEcCCCCCCCHHHHHHHHhcCCCCCEEEE
Confidence 45899999999999999999999999999999999999988764 4999999999999999999999987778999999
Q ss_pred EcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHhc
Q 007940 97 SVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 137 (584)
Q Consensus 97 Sa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrrk 137 (584)
++..+......+++.||++|+.||++..+|...+++++++.
T Consensus 81 t~~~~~~~~~~~~~~ga~d~l~kP~~~~eL~~~i~~~l~r~ 121 (237)
T PRK11173 81 TGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 (237)
T ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhcc
Confidence 99998888999999999999999999999999999888764
No 12
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=99.71 E-value=2.1e-16 Score=153.85 Aligned_cols=117 Identities=25% Similarity=0.498 Sum_probs=107.8
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc-CCCCEEEE
Q 007940 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLE-MDLPVIMM 96 (584)
Q Consensus 18 mrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~-~~iPVIvl 96 (584)
|+||||||++..+..+...|+..|+.|..+.++.+++..+... .||+||+|+.||+++|+++++.++.. +.+|||++
T Consensus 1 m~iliv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~--~~dlvild~~~~~~~g~~~~~~lr~~~~~~pii~l 78 (227)
T PRK09836 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTG--DYDLIILDIMLPDVNGWDIVRMLRSANKGMPILLL 78 (227)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhhC--CCCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 5899999999999999999999999999999999999987654 39999999999999999999999754 68899999
Q ss_pred EcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 007940 97 SVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 136 (584)
Q Consensus 97 Sa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrr 136 (584)
++..+......++++||++|+.||++..+|..+++.++++
T Consensus 79 s~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 118 (227)
T PRK09836 79 TALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR 118 (227)
T ss_pred EcCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999887754
No 13
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.71 E-value=8.7e-17 Score=159.56 Aligned_cols=120 Identities=30% Similarity=0.439 Sum_probs=109.6
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhCC-CeEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh-ccCCCCEE
Q 007940 18 LRVLVVDDDLAWLKILEKMLKKCS-YEVT-TCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVG-LEMDLPVI 94 (584)
Q Consensus 18 mrVLIVDDd~~~r~~L~~lL~~~g-y~V~-~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir-~~~~iPVI 94 (584)
++|+||||++.+|..|+.+|+..+ ++|+ .+.++.++++.+.... ||+||+|+.||+++|+++++.|+ ..++++||
T Consensus 1 ~~vlivDDh~l~r~gl~~~L~~~~~~~vv~~a~~~~~~l~~~~~~~--pdvvl~Dl~mP~~~G~e~~~~l~~~~p~~~vv 78 (211)
T COG2197 1 IKVLIVDDHPLVREGLRQLLELEPDLEVVGEASNGEEALDLARELK--PDVVLLDLSMPGMDGLEALKQLRARGPDIKVV 78 (211)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCEEEEEeCCHHHHHHHhhhcC--CCEEEEcCCCCCCChHHHHHHHHHHCCCCcEE
Confidence 589999999999999999998877 7755 7778999999977644 99999999999999999999997 45788999
Q ss_pred EEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHhcch
Q 007940 95 MMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIH 139 (584)
Q Consensus 95 vlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrrk~~ 139 (584)
++|...+...+..++++||++|+.|..+.++|.++++.++.+..+
T Consensus 79 vlt~~~~~~~v~~al~~Ga~Gyl~K~~~~~~l~~ai~~v~~G~~~ 123 (211)
T COG2197 79 VLTAHDDPAYVIRALRAGADGYLLKDASPEELVEAIRAVAAGGTY 123 (211)
T ss_pred EEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCCeE
Confidence 999999999999999999999999999999999999999877644
No 14
>PRK13856 two-component response regulator VirG; Provisional
Probab=99.70 E-value=5.3e-16 Score=153.63 Aligned_cols=117 Identities=26% Similarity=0.458 Sum_probs=106.1
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCCEEEEEc
Q 007940 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSV 98 (584)
Q Consensus 19 rVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVIvlSa 98 (584)
+||||||++..+..+...|+..||.|..+.++.+++..+.... ||+||+|+.||+++|+++++.++....+|+|++++
T Consensus 3 ~ILived~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~--~dlvi~d~~l~~~~g~~l~~~i~~~~~~pii~lt~ 80 (241)
T PRK13856 3 HVLVIDDDVAMRHLIVEYLTIHAFKVTAVADSQQFNRVLASET--VDVVVVDLNLGREDGLEIVRSLATKSDVPIIIISG 80 (241)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhhCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCcEEEEEC
Confidence 8999999999999999999999999999999999999887644 99999999999999999999998767899999998
Q ss_pred C-CChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHhc
Q 007940 99 D-GETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 137 (584)
Q Consensus 99 ~-~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrrk 137 (584)
. .+.....+++++||++|+.||++..+|...++.++++.
T Consensus 81 ~~~~~~~~~~~l~~Ga~~yl~kP~~~~eL~~~i~~~l~~~ 120 (241)
T PRK13856 81 DRLEEADKVVALELGATDFIAKPFGTREFLARIRVALRVR 120 (241)
T ss_pred CCCcHHHHHHHHhcCcCeEEeCCCCHHHHHHHHHHHHhhc
Confidence 5 45666789999999999999999999999998887653
No 15
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=99.69 E-value=5.2e-16 Score=152.86 Aligned_cols=117 Identities=21% Similarity=0.346 Sum_probs=108.0
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCCEEEEEc
Q 007940 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSV 98 (584)
Q Consensus 19 rVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVIvlSa 98 (584)
+||||||++..+..+...|+..|+.+..+.++.+|+..+.... ||+||+|+.||+++|+++++.++.....|+|++++
T Consensus 3 ~iLivedd~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~~~--~dlvild~~l~~~~g~~~~~~ir~~~~~pii~l~~ 80 (240)
T PRK10701 3 KIVFVEDDAEVGSLIAAYLAKHDIDVTVEPRGDRAEATILREQ--PDLVLLDIMLPGKDGMTICRDLRPKWQGPIVLLTS 80 (240)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHhhCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEEEC
Confidence 8999999999999999999999999999999999999887644 99999999999999999999998766789999999
Q ss_pred CCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHhc
Q 007940 99 DGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 137 (584)
Q Consensus 99 ~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrrk 137 (584)
..+......++++||+|||.||+...+|..+++.++++.
T Consensus 81 ~~~~~~~~~~~~~Ga~d~l~kP~~~~~l~~~i~~~l~~~ 119 (240)
T PRK10701 81 LDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQN 119 (240)
T ss_pred CCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhcc
Confidence 888888889999999999999999999999998887653
No 16
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=99.69 E-value=1.8e-16 Score=165.63 Aligned_cols=121 Identities=34% Similarity=0.519 Sum_probs=111.3
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-c---CC
Q 007940 15 PAGLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGL-E---MD 90 (584)
Q Consensus 15 p~gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~-~---~~ 90 (584)
...++||+|||++..+..++.+|+..||.|..|.++.+|++++.+.. +|+||+|++||+|+|+++|++|+. . ..
T Consensus 12 ~~~~~vl~vDD~~~~~~~~~~lL~~~~y~v~~ae~g~~a~kl~~~~~--~dlvllD~~mp~mdg~ev~~~lk~~~p~t~~ 89 (360)
T COG3437 12 DEKLTVLLVDDEPDNLEALRQLLRMIGYRVIEAENGEEALKLLQEEP--PDLVLLDVRMPEMDGAEVLNKLKAMSPSTRR 89 (360)
T ss_pred cccceEEEecCchhHHHHHHHHHHhcccceeeecCchHHHHHhcccC--CceEEeeccCCCccHHHHHHHHHhcCCcccc
Confidence 45789999999999999999999999999999999999999988755 999999999999999999999975 3 37
Q ss_pred CCEEEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHhc
Q 007940 91 LPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 137 (584)
Q Consensus 91 iPVIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrrk 137 (584)
+|||++|+..+.+...+|+..||+|||.||+++.+|...+...+..+
T Consensus 90 ip~i~lT~~~d~~~~~~~~~~g~~dyl~KP~~~~~l~~rv~~~~q~k 136 (360)
T COG3437 90 IPVILLTAYADSEDRQRALEAGADDYLSKPISPKELVARVSSHLQLK 136 (360)
T ss_pred cceEEEeecCChHHHHHHHHhhHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999887655444
No 17
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=99.69 E-value=5.5e-16 Score=152.34 Aligned_cols=119 Identities=29% Similarity=0.524 Sum_probs=109.4
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc-CCCCEEE
Q 007940 17 GLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLE-MDLPVIM 95 (584)
Q Consensus 17 gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~-~~iPVIv 95 (584)
..+||||||++..+..+...|+..||.+..+.++.+++..+... .||+||+|+.||+++|+++++.++.. +.+|||+
T Consensus 5 ~~~iLiv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~--~~dlvild~~l~~~~g~~~~~~lr~~~~~~pii~ 82 (239)
T PRK09468 5 NYKILVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRLLTRE--SFHLMVLDLMLPGEDGLSICRRLRSQNNPTPIIM 82 (239)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 46999999999999999999999999999999999999988764 39999999999999999999999754 5799999
Q ss_pred EEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHhc
Q 007940 96 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 137 (584)
Q Consensus 96 lSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrrk 137 (584)
+++..+......+++.||++|+.||++..+|...++.++++.
T Consensus 83 ls~~~~~~~~~~~l~~Ga~~~l~kP~~~~~L~~~i~~~~~r~ 124 (239)
T PRK09468 83 LTAKGEEVDRIVGLEIGADDYLPKPFNPRELLARIRAVLRRQ 124 (239)
T ss_pred EECCCcHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999999887653
No 18
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=99.69 E-value=5.3e-16 Score=149.81 Aligned_cols=117 Identities=26% Similarity=0.513 Sum_probs=108.2
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCCEEEEE
Q 007940 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMS 97 (584)
Q Consensus 18 mrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVIvlS 97 (584)
|+||||||++..+..+...|+..|+.+..+.++.+++..+... .||+||+|+.||+++|+++++.++....+|+|+++
T Consensus 1 m~iliv~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~l~~~~~~--~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~ii~ls 78 (223)
T PRK11517 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKD--DYALIILDIMLPGMDGWQILQTLRTAKQTPVICLT 78 (223)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcC--CCCEEEEECCCCCCCHHHHHHHHHcCCCCCEEEEE
Confidence 5899999999999999999999999999999999999988764 49999999999999999999999876789999999
Q ss_pred cCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 007940 98 VDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 136 (584)
Q Consensus 98 a~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrr 136 (584)
+..+......++++||++|+.||+...+|..+++.++++
T Consensus 79 ~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 117 (223)
T PRK11517 79 ARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 117 (223)
T ss_pred CCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999887754
No 19
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=99.68 E-value=1.4e-15 Score=135.48 Aligned_cols=120 Identities=36% Similarity=0.605 Sum_probs=104.9
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHH-HHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc-CCCC
Q 007940 15 PAGLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLAR-DALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLE-MDLP 92 (584)
Q Consensus 15 p~gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~-eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~-~~iP 92 (584)
..+.+||||||++..+..++.+|...|+.|..+.++. +|++.++... .||+|++|+.||+|+|+++++.++.. ..+|
T Consensus 3 ~~~~~vLivdD~~~~~~~~~~~l~~~g~~v~~a~~g~~~al~~~~~~~-~~dlii~D~~mp~~~G~~~~~~l~~~~~~~p 81 (130)
T COG0784 3 LSGLRVLVVDDEPVNRRLLKRLLEDLGYEVVEAADGEEEALELLRELP-QPDLILLDINMPGMDGIELLRRLRARGPNIP 81 (130)
T ss_pred CCCcEEEEEcCCHHHHHHHHHHHHHcCCeEEEeCChHHHHHHHHHhCC-CCCEEEEeCCCCCCCHHHHHHHHHhCCCCCC
Confidence 3578999999999999999999999999999999995 9999998741 38999999999999999999999765 6788
Q ss_pred EEEEEcCCChHHHHhhhhcCCceEEeCCCCHHH-HHHHHHHHHH
Q 007940 93 VIMMSVDGETSRVMKGVQHGACDYLLKPIRMKE-LRNIWQHVFR 135 (584)
Q Consensus 93 VIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~e-L~~aI~~vlr 135 (584)
+|++|+.........+++.|+++|+.||+...+ |..++.+.+.
T Consensus 82 vv~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~ 125 (130)
T COG0784 82 VILLTAYADEADRERALAAGADDYLTKPIFLEEELLAALRRLLA 125 (130)
T ss_pred EEEEEcCcCHHHHHHHHHcCCCeEEcCCCCcHHHHHHHHHHHHH
Confidence 899999888776778899999999999977777 6777765543
No 20
>PRK12555 chemotaxis-specific methylesterase; Provisional
Probab=99.67 E-value=6.1e-16 Score=162.85 Aligned_cols=208 Identities=19% Similarity=0.203 Sum_probs=150.0
Q ss_pred CEEEEEeCCHHHHHHHHHHHH-hCCCeEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCCEEE
Q 007940 18 LRVLVVDDDLAWLKILEKMLK-KCSYEVT-TCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIM 95 (584)
Q Consensus 18 mrVLIVDDd~~~r~~L~~lL~-~~gy~V~-~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVIv 95 (584)
+|||||||++..+..++.+|+ ..++.+. .+.++.+|++.+.... ||+|++|+.||+|+|++++++++....+|||+
T Consensus 1 ~~VLvVdd~~~~~~~l~~~L~~~~~~~vv~~a~~~~eal~~l~~~~--pDlVllD~~mp~~~G~e~l~~l~~~~~~pviv 78 (337)
T PRK12555 1 MRIGIVNDSPLAVEALRRALARDPDHEVVWVATDGAQAVERCAAQP--PDVILMDLEMPRMDGVEATRRIMAERPCPILI 78 (337)
T ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhccC--CCEEEEcCCCCCCCHHHHHHHHHHHCCCcEEE
Confidence 589999999999999999994 5678876 7899999999988644 99999999999999999999997777799999
Q ss_pred EEcCCC--hHHHHhhhhcCCceEEeCCC---------CHHHHHHHHHHHHHhcchhhhhhhhhhhhhhhhccccCCCCCC
Q 007940 96 MSVDGE--TSRVMKGVQHGACDYLLKPI---------RMKELRNIWQHVFRKKIHEVRDIENIEGFESIHMTRSGSDQSV 164 (584)
Q Consensus 96 lSa~~d--~~~~~~aL~~GAdDYL~KP~---------~~~eL~~aI~~vlrrk~~~~~~~~~~e~~~~~~~~~~~~~~~~ 164 (584)
+++... .....++++.||++|+.||+ ..++|...++++.+.+. +.....
T Consensus 79 vs~~~~~~~~~~~~al~~Ga~d~l~KP~~~~~~~~~~~~~~l~~~i~~~~~~~~------------------~~~~~~-- 138 (337)
T PRK12555 79 VTSLTERNASRVFEAMGAGALDAVDTPTLGIGAGLEEYAAELLAKIDQIGRLLG------------------RRLAPA-- 138 (337)
T ss_pred EeCCCCcCHHHHHHHHhcCceEEEECCCCCcchhHHHHHHHHHHHHHHHhhccc------------------ccCCCc--
Confidence 998743 55677899999999999999 23334444433321110 000000
Q ss_pred CCCcccccchhhHHhhhcccccCCCCCCCCCCcccccccccchhHHHHHHHHHHHhcccccCHHHHHhhhCCCCCchHH-
Q 007940 165 DGPLLTGEDLTSVRKRKDAENRHDDRDCGDASSTKKARVVWSIDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTREN- 243 (584)
Q Consensus 165 ~~~ll~gedl~~~~~Rk~~~~~~~d~~~~~~ss~KK~rvvws~eLhqkFv~av~~iG~s~~~Pk~Il~~m~v~~Lt~~~- 243 (584)
... .. ...... . ....+..+|.++++|.++.+++ ..++...
T Consensus 139 ----------------~~~--~~--------~~~~~~-----~-----~~~~v~~ig~s~gg~~al~~ll--~~l~~~~~ 180 (337)
T PRK12555 139 ----------------AAP--AA--------ASAAPF-----R-----TTPRLVAIGASAGGPAALAVLL--GGLPADFP 180 (337)
T ss_pred ----------------ccC--CC--------CCCCCC-----C-----CCceEEEEEeCcCCHHHHHHHH--HhCCCCCC
Confidence 000 00 000000 0 0112567799999999999888 5555443
Q ss_pred ----HHhhhHH--HHHHHHhhhhh---hhhhccCCCccCCCCCCCCCCccc
Q 007940 244 ----VASHLQK--YRLYLTRLQKD---ELKTSVGGIKQKDSPSKDSAASFG 285 (584)
Q Consensus 244 ----V~sHlqk--yr~~~~RL~~~---~~~~~~~g~~~~~~~~~~~~~~~~ 285 (584)
+++|++. .+.++++|... .++++.+|+..++..-+..+++..
T Consensus 181 ~~ivivqh~~~~~~~~l~~~l~~~~~~~V~~a~~g~~~~~g~vyi~p~~~~ 231 (337)
T PRK12555 181 AAIVIVQHVDAAFAAGMAEWLDGQTALPVREAREGERPQPGHVLLAPTNDH 231 (337)
T ss_pred CcEEEEEcCCCCchHHHHHHHhccCCCeEEEcCCCCeecCCEEEEcCCCCE
Confidence 7899988 57888888777 788999999999987777665554
No 21
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=99.67 E-value=1.6e-15 Score=147.85 Aligned_cols=118 Identities=28% Similarity=0.478 Sum_probs=108.0
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc---CCCCE
Q 007940 17 GLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLE---MDLPV 93 (584)
Q Consensus 17 gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~---~~iPV 93 (584)
.++||||||++..+..+...|+..|+.+..+.++.+++..+... .||+||+|+.||+++|+++++.++.. +.+||
T Consensus 2 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~--~~dlvild~~l~~~~g~~~~~~l~~~~~~~~~pv 79 (229)
T PRK10161 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEP--WPDLILLDWMLPGGSGIQFIKHLKRESMTRDIPV 79 (229)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcc--CCCEEEEeCCCCCCCHHHHHHHHHhccccCCCCE
Confidence 36899999999999999999999999999999999999988764 39999999999999999999999753 57899
Q ss_pred EEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 007940 94 IMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 136 (584)
Q Consensus 94 IvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrr 136 (584)
|++++..+.....+++++||++||.||++..+|..+++.++++
T Consensus 80 i~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~~ 122 (229)
T PRK10161 80 VMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 (229)
T ss_pred EEEECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999887764
No 22
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=99.66 E-value=2.1e-15 Score=149.42 Aligned_cols=121 Identities=21% Similarity=0.381 Sum_probs=109.0
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHHhC-CCe-EEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCC
Q 007940 15 PAGLRVLVVDDDLAWLKILEKMLKKC-SYE-VTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGL-EMDL 91 (584)
Q Consensus 15 p~gmrVLIVDDd~~~r~~L~~lL~~~-gy~-V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~-~~~i 91 (584)
|+.++||||||++..+..++.+|+.. ++. |..+.++.+|++.+.... ||+||+|+.||+++|+++++.++. .+..
T Consensus 2 ~~~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~a~~~~~al~~~~~~~--pdlvllD~~mp~~~gle~~~~l~~~~~~~ 79 (225)
T PRK10046 2 TAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFK--PGLILLDNYLPDGRGINLLHELVQAHYPG 79 (225)
T ss_pred CCcceEEEECCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhcC--CCEEEEeCCCCCCcHHHHHHHHHhcCCCC
Confidence 56789999999999999999999864 674 668999999999998654 999999999999999999999975 4578
Q ss_pred CEEEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHhc
Q 007940 92 PVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 137 (584)
Q Consensus 92 PVIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrrk 137 (584)
|||++|+..+.....++++.||++||.||++.++|..+++++..++
T Consensus 80 ~iivls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~L~~~i~~~~~~~ 125 (225)
T PRK10046 80 DVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRK 125 (225)
T ss_pred CEEEEEcCCCHHHHHHHHHcCccEEEECCcCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998876554
No 23
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=99.66 E-value=2.1e-15 Score=145.05 Aligned_cols=117 Identities=31% Similarity=0.553 Sum_probs=107.6
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc-CCCCEEEE
Q 007940 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLE-MDLPVIMM 96 (584)
Q Consensus 18 mrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~-~~iPVIvl 96 (584)
|+||||||++..+..+...|+..|+.+..+.++.+++..+.... ||+||+|+.||+++|+++++.++.. +.+|+|++
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~--~d~illd~~~~~~~g~~~~~~l~~~~~~~pii~l 78 (222)
T PRK10643 1 MKILIVEDDTLLLQGLILALQTEGYACDCASTAREAEALLESGH--YSLVVLDLGLPDEDGLHLLRRWRQKKYTLPVLIL 78 (222)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCC--CCEEEEECCCCCCCHHHHHHHHHhcCCCCcEEEE
Confidence 58999999999999999999999999999999999999887643 9999999999999999999999754 67899999
Q ss_pred EcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 007940 97 SVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 136 (584)
Q Consensus 97 Sa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrr 136 (584)
++..+......++++||++|+.||++..+|..+++.++++
T Consensus 79 s~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~ 118 (222)
T PRK10643 79 TARDTLEDRVAGLDVGADDYLVKPFALEELHARIRALIRR 118 (222)
T ss_pred ECCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999887754
No 24
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=99.66 E-value=2.4e-15 Score=146.06 Aligned_cols=117 Identities=30% Similarity=0.503 Sum_probs=106.7
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCCEEEEE
Q 007940 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMS 97 (584)
Q Consensus 18 mrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVIvlS 97 (584)
.+||||||++..+..+...|+..|+.+..+.++.+++..+.. .||+||+|+.||+++|+++++.++....+|+|++|
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~---~~d~vl~d~~~~~~~g~~~~~~l~~~~~~~ii~lt 78 (232)
T PRK10955 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD---SIDLLLLDVMMPKKNGIDTLKELRQTHQTPVIMLT 78 (232)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHhhc---CCCEEEEeCCCCCCcHHHHHHHHHhcCCCcEEEEE
Confidence 389999999999999999999999999999999999998753 39999999999999999999999765569999999
Q ss_pred cCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHhc
Q 007940 98 VDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 137 (584)
Q Consensus 98 a~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrrk 137 (584)
+..+......+++.||++|+.||++..+|..+++.++++.
T Consensus 79 ~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~ 118 (232)
T PRK10955 79 ARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS 118 (232)
T ss_pred CCCCHHHHHHHHHcCCCEEEcCCCCHHHHHHHHHHHHhcc
Confidence 9988888899999999999999999999999998887653
No 25
>PLN03029 type-a response regulator protein; Provisional
Probab=99.64 E-value=5e-15 Score=147.71 Aligned_cols=122 Identities=34% Similarity=0.610 Sum_probs=109.1
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcC------------------CCceEEEEecCCCCCC
Q 007940 16 AGLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERK------------------DGYDIVISDVNMPDMD 77 (584)
Q Consensus 16 ~gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~------------------~~pDLVIlDi~MPdmd 77 (584)
..++||||||+...+..+..+|+..||.|.++.++.+|++.+.... ..+|+||+|+.||+|+
T Consensus 7 ~~~~VLiVdd~~~~~~~l~~~L~~~g~~v~~a~sg~~al~~l~~~~~d~~~p~~~~~~~~~~~~~~~dlVllD~~mp~~~ 86 (222)
T PLN03029 7 SQFHVLAVDDSLIDRKLIEKLLKTSSYQVTTVDSGSKALKFLGLHEDDRSNPDTPSVSPNSHQEVEVNLIITDYCMPGMT 86 (222)
T ss_pred CCccEEEEeCCHHHHHHHHHHHHHcCceEEEECCHHHHHHHHHhccccccccccccccccccccccCCEEEEcCCCCCCC
Confidence 4589999999999999999999999999999999999999886432 1368999999999999
Q ss_pred HHHHHHHHhcc---CCCCEEEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHhc
Q 007940 78 GFKLLEHVGLE---MDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 137 (584)
Q Consensus 78 GlELL~~Ir~~---~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrrk 137 (584)
|+++++.|+.. ..+|||++|+........+++++||++||.||+...+|..++.++++.+
T Consensus 87 G~e~l~~ir~~~~~~~ipvIils~~~~~~~~~~al~~Ga~dyl~KP~~~~~L~~l~~~~~~~~ 149 (222)
T PLN03029 87 GYDLLKKIKESSSLRNIPVVIMSSENVPSRITRCLEEGAEEFFLKPVQLSDLNRLKPHMMKTK 149 (222)
T ss_pred HHHHHHHHHhccccCCCcEEEEeCCCCHHHHHHHHHhCchheEECCCCHHHHHHHHHHHHHHH
Confidence 99999999754 4789999999999999999999999999999999999988888776654
No 26
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=99.63 E-value=1.4e-14 Score=140.77 Aligned_cols=117 Identities=28% Similarity=0.445 Sum_probs=106.8
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCC--CCHHHHHHHHhcc-CCCCEEE
Q 007940 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPD--MDGFKLLEHVGLE-MDLPVIM 95 (584)
Q Consensus 19 rVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPd--mdGlELL~~Ir~~-~~iPVIv 95 (584)
+||||||++..+..+...|+..||.+..+.++.+++..+.... ||+||+|+.||+ .+|+++++.++.. +.+|+|+
T Consensus 2 ~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~--~dlvild~~l~~~~~~g~~~~~~i~~~~~~~pii~ 79 (227)
T TIGR03787 2 RIAIVEDEAAIRENYADALKRQGYQVTTYADRPSAMQAFRQRL--PDLAIIDIGLGEEIDGGFMLCQDLRSLSATLPIIF 79 (227)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHHhCC--CCEEEEECCCCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 7999999999999999999999999998999999999887644 999999999998 5899999999754 5789999
Q ss_pred EEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHhc
Q 007940 96 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 137 (584)
Q Consensus 96 lSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrrk 137 (584)
+|+..+......++++||++|+.||+...+|..+++.++++.
T Consensus 80 ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 121 (227)
T TIGR03787 80 LTARDSDFDTVSGLRLGADDYLTKDISLPHLLARITALFRRA 121 (227)
T ss_pred EECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999887653
No 27
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=99.62 E-value=6.5e-15 Score=159.31 Aligned_cols=123 Identities=34% Similarity=0.513 Sum_probs=114.1
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc---CCCC
Q 007940 16 AGLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLE---MDLP 92 (584)
Q Consensus 16 ~gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~---~~iP 92 (584)
...+||||||+...++.++.+|...||.|..+.++.+|+..+.+.. ||+||+|+.||+|||+++|++++.. ..+|
T Consensus 131 ~~~kILvvdD~~~~~~~l~~~L~~~g~~v~~a~~~~~Al~~~~e~~--~dlil~d~~mp~~dg~el~~~lr~~~~t~~ip 208 (435)
T COG3706 131 APKKILVVDDDATQRERLRRILQVEGFRVVEATDGEEALLQLAELP--PDLVLLDANMPDMDGLELCTRLRQLERTRDIP 208 (435)
T ss_pred cCceEEEEcCcHHHHHHHHHHHHhccceeeeecCHHHHHHHHhcCC--CcEEEEecCCCccCHHHHHHHHhccccccccc
Confidence 4679999999999999999999999999999999999999998864 9999999999999999999998743 4789
Q ss_pred EEEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHhcchh
Q 007940 93 VIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIHE 140 (584)
Q Consensus 93 VIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrrk~~~ 140 (584)
||+++...+.....+|++.|+.|||.||+...+|...+++.++++...
T Consensus 209 ii~~~~~~d~~~~~~Af~~G~~Dyi~kPi~~~~l~~Rl~~~l~~~~~~ 256 (435)
T COG3706 209 IILLSSKDDDELVVRAFELGVNDYITKPIEEGELRARLRRQLRRKRYE 256 (435)
T ss_pred EEEEecccchHHHHHHHHcCCcceEecCCCHHHHHHHHHHHHHhhhHH
Confidence 999999999999999999999999999999999999999988876543
No 28
>TIGR01387 cztR_silR_copR heavy metal response regulator. Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system.
Probab=99.61 E-value=1.2e-14 Score=139.34 Aligned_cols=115 Identities=31% Similarity=0.563 Sum_probs=105.8
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCCEEEEEc
Q 007940 20 VLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGL-EMDLPVIMMSV 98 (584)
Q Consensus 20 VLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~-~~~iPVIvlSa 98 (584)
||||||++..+..+...|+..|+.+..+.++.+++..+.... ||+|++|+.||+++|+++++.++. .+.+|||+++.
T Consensus 1 iliidd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~--~dlvl~d~~~~~~~g~~~~~~l~~~~~~~~iivls~ 78 (218)
T TIGR01387 1 ILVVEDEQKTAEYLQQGLSESGYVVDAASNGRDGLHLALKDD--YDLIILDVMLPGMDGWQILQTLRRSGKQTPVLFLTA 78 (218)
T ss_pred CEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHccCCCCcEEEEEc
Confidence 689999999999999999999999999999999999887643 999999999999999999999974 46899999999
Q ss_pred CCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 007940 99 DGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 136 (584)
Q Consensus 99 ~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrr 136 (584)
..+......++++||++|+.||+...+|..+++.++++
T Consensus 79 ~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 116 (218)
T TIGR01387 79 RDSVADKVKGLDLGADDYLVKPFSFSELLARVRTLLRR 116 (218)
T ss_pred CCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999887754
No 29
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=99.61 E-value=6.8e-15 Score=149.74 Aligned_cols=114 Identities=31% Similarity=0.494 Sum_probs=104.4
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCCEEEE
Q 007940 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGL-EMDLPVIMM 96 (584)
Q Consensus 18 mrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~-~~~iPVIvl 96 (584)
+||+||||+..+...|..+|++.|..+.+|....+|+..+...+ ||||++||.||+|+|++++++++. .+.+|||++
T Consensus 1 ~~~iiVDdd~a~~~~l~~iLs~~~~~~~~~~~~~eal~~Le~~k--pDLifldI~mp~~ngiefaeQvr~i~~~v~iifI 78 (361)
T COG3947 1 PRIIIVDDDAAIVKLLSVILSRAGHEVRSCSHPVEALDLLEVFK--PDLIFLDIVMPYMNGIEFAEQVRDIESAVPIIFI 78 (361)
T ss_pred CcEEEEcchHHHHHHHHHHHHhccchhhccCCHHHHHHHHHhcC--CCEEEEEeecCCccHHHHHHHHHHhhccCcEEEE
Confidence 58999999999999999999999988889999999999999876 999999999999999999999974 478999999
Q ss_pred EcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHH
Q 007940 97 SVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFR 135 (584)
Q Consensus 97 Sa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlr 135 (584)
|++. +.+.+++...++|||.||++.+.|-++|.++.+
T Consensus 79 ssh~--eya~dsf~~n~~dYl~KPvt~ekLnraIdr~~k 115 (361)
T COG3947 79 SSHA--EYADDSFGMNLDDYLPKPVTPEKLNRAIDRRLK 115 (361)
T ss_pred ecch--hhhhhhcccchHhhccCCCCHHHHHHHHHHHhc
Confidence 9885 556788888899999999999999999988773
No 30
>PRK00742 chemotaxis-specific methylesterase; Provisional
Probab=99.59 E-value=7.2e-15 Score=155.63 Aligned_cols=218 Identities=22% Similarity=0.312 Sum_probs=146.2
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHHhC-CCeEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCCE
Q 007940 16 AGLRVLVVDDDLAWLKILEKMLKKC-SYEVT-TCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPV 93 (584)
Q Consensus 16 ~gmrVLIVDDd~~~r~~L~~lL~~~-gy~V~-~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPV 93 (584)
+.++||||||++..+..+..+|+.. ++.+. .+.++.+++..+.... ||+|++|+.||+++|++++++|+....+|+
T Consensus 2 ~~~~ILiVdd~~~~~~~L~~~L~~~~~~~vv~~a~~~~~al~~~~~~~--~DlVllD~~mp~~dgle~l~~i~~~~~~pi 79 (354)
T PRK00742 2 MKIRVLVVDDSAFMRRLISEILNSDPDIEVVGTAPDGLEAREKIKKLN--PDVITLDVEMPVMDGLDALEKIMRLRPTPV 79 (354)
T ss_pred CccEEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhhhC--CCEEEEeCCCCCCChHHHHHHHHHhCCCCE
Confidence 3579999999999999999999876 78777 8899999999887644 999999999999999999999976555999
Q ss_pred EEEEcCC--ChHHHHhhhhcCCceEEeCCCCH-----HH----HHHHHHHHHHhcchhhhhhhhhhhhhhhhccccCCCC
Q 007940 94 IMMSVDG--ETSRVMKGVQHGACDYLLKPIRM-----KE----LRNIWQHVFRKKIHEVRDIENIEGFESIHMTRSGSDQ 162 (584)
Q Consensus 94 IvlSa~~--d~~~~~~aL~~GAdDYL~KP~~~-----~e----L~~aI~~vlrrk~~~~~~~~~~e~~~~~~~~~~~~~~ 162 (584)
|++|+.. ......++++.||++||.||+.. .+ |..+++.+.+++. +.. ..
T Consensus 80 Ivls~~~~~~~~~~~~al~~Ga~d~l~kP~~~~~~~~~~~~~~l~~~i~~~~~~~~------------------~~~-~~ 140 (354)
T PRK00742 80 VMVSSLTERGAEITLRALELGAVDFVTKPFLGISLGMDEYKEELAEKVRAAARARV------------------RAL-PP 140 (354)
T ss_pred EEEecCCCCCHHHHHHHHhCCCcEEEeCCcccccchHHHHHHHHHHHHHHHhhccc------------------ccc-Cc
Confidence 9999753 34667789999999999999943 22 2222222211110 000 00
Q ss_pred CCCCCcccccchhhHHhhhcccccCCCCCCCCCCcccccccccchhHHHHHHHHHHHhcccccCHHHHHhhhCCCCCchH
Q 007940 163 SVDGPLLTGEDLTSVRKRKDAENRHDDRDCGDASSTKKARVVWSIDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRE 242 (584)
Q Consensus 163 ~~~~~ll~gedl~~~~~Rk~~~~~~~d~~~~~~ss~KK~rvvws~eLhqkFv~av~~iG~s~~~Pk~Il~~m~v~~Lt~~ 242 (584)
.. ...+ ...... +......... . ..+..+|.+.++++++.+++ ..++.+
T Consensus 141 ~~------------~~~~-----~~~~~~---~~~~~~~~~~------~---~~~~~igaS~gg~~al~~~l--~~l~~~ 189 (354)
T PRK00742 141 RA------------AAAA-----RAAAAA---PAALAAAPLL------S---SKLVAIGTSTGGPEALQKVL--TPLPAN 189 (354)
T ss_pred cc------------cccC-----CCcccC---CcccccccCC------C---CcEEEEecCccCHHHHHHHH--HhCCCC
Confidence 00 0000 000000 0000000000 0 02456799999999999888 333333
Q ss_pred -----HHHhhhHH--HHHHHHhhhhh---hhhhccCCCccCCCCCCCCCCccc
Q 007940 243 -----NVASHLQK--YRLYLTRLQKD---ELKTSVGGIKQKDSPSKDSAASFG 285 (584)
Q Consensus 243 -----~V~sHlqk--yr~~~~RL~~~---~~~~~~~g~~~~~~~~~~~~~~~~ 285 (584)
.+++||+. ...++++|.+. .++.+.+|+...+..-+..++++.
T Consensus 190 ~~~~~~~~~h~~~~~~~~l~~~l~~~~~~~v~~~~~~~~~~~~~vy~~p~~~~ 242 (354)
T PRK00742 190 FPAPILIVQHMPAGFTKSFAERLNRLCQIEVKEAEDGERLKPGHAYIAPGGKH 242 (354)
T ss_pred CCCeEEEEECCCCChhHHHHHHHhccCCCeEEEcCCCCEeeCCEEEEcCCCCE
Confidence 38899999 46677777665 688889999988876666555444
No 31
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=99.58 E-value=5e-14 Score=135.52 Aligned_cols=118 Identities=31% Similarity=0.558 Sum_probs=108.0
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc---CCCCE
Q 007940 17 GLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLE---MDLPV 93 (584)
Q Consensus 17 gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~---~~iPV 93 (584)
+++||||||++..+..+...|+..|+.+..+.++.+++..+.... ||+||+|+.||+++|+++++.++.. +.+||
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~--~d~vi~d~~~~~~~g~~~~~~l~~~~~~~~~~i 79 (226)
T TIGR02154 2 TRRILVVEDEPAIRELIAYNLEKAGYDVVEAGDGDEALTLINERG--PDLILLDWMLPGTSGIELCRRLRRRPETRAIPI 79 (226)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHHhcC--CCEEEEECCCCCCcHHHHHHHHHccccCCCCCE
Confidence 468999999999999999999999999999999999999887644 9999999999999999999999753 57899
Q ss_pred EEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 007940 94 IMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 136 (584)
Q Consensus 94 IvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrr 136 (584)
|++++..+.....++++.||++|+.||++..+|..+++.++++
T Consensus 80 i~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 122 (226)
T TIGR02154 80 IMLTARGEEEDRVRGLETGADDYITKPFSPRELLARIKAVLRR 122 (226)
T ss_pred EEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHhcc
Confidence 9999999989999999999999999999999999999888755
No 32
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=99.58 E-value=5.6e-14 Score=135.07 Aligned_cols=117 Identities=26% Similarity=0.448 Sum_probs=107.3
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc-CCCCEEEE
Q 007940 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLE-MDLPVIMM 96 (584)
Q Consensus 18 mrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~-~~iPVIvl 96 (584)
|+||||||++..+..+...|+..|+.+..+.++.+++..+... .||+||+|+.||+++|+++++.++.. +.+|+|++
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~--~~dlvild~~l~~~~g~~~~~~i~~~~~~~~ii~l 78 (219)
T PRK10336 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSA--PYDAVILDLTLPGMDGRDILREWREKGQREPVLIL 78 (219)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhC--CCCEEEEECCCCCCCHHHHHHHHHhcCCCCcEEEE
Confidence 5899999999999999999999999999999999999988754 49999999999999999999999754 67899999
Q ss_pred EcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 007940 97 SVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 136 (584)
Q Consensus 97 Sa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrr 136 (584)
|...+......++++||++|+.||++.++|..+++.++++
T Consensus 79 t~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~ 118 (219)
T PRK10336 79 TARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRR 118 (219)
T ss_pred ECCCCHHHHHHHHhCCCCeEEECCCCHHHHHHHHHHHHhc
Confidence 9999989999999999999999999999999999887764
No 33
>CHL00148 orf27 Ycf27; Reviewed
Probab=99.57 E-value=7.7e-14 Score=136.23 Aligned_cols=119 Identities=39% Similarity=0.607 Sum_probs=109.2
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCCEEE
Q 007940 16 AGLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIM 95 (584)
Q Consensus 16 ~gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVIv 95 (584)
..++||||||++..+..+...|+..++.+..+.++.+++..+... .||+||+|+.||+++|+++++.++..+.+|+|+
T Consensus 5 ~~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~l~~~~~~--~~d~illd~~~~~~~g~~~~~~l~~~~~~~ii~ 82 (240)
T CHL00148 5 SKEKILVVDDEAYIRKILETRLSIIGYEVITASDGEEALKLFRKE--QPDLVILDVMMPKLDGYGVCQEIRKESDVPIIM 82 (240)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCcEEE
Confidence 357999999999999999999999999998889999999988764 399999999999999999999997667899999
Q ss_pred EEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 007940 96 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 136 (584)
Q Consensus 96 lSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrr 136 (584)
+|+..+......+++.||++||.||++..+|..+++.++++
T Consensus 83 ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~~ 123 (240)
T CHL00148 83 LTALGDVSDRITGLELGADDYVVKPFSPKELEARIRSVLRR 123 (240)
T ss_pred EECCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHhh
Confidence 99999988889999999999999999999999999887755
No 34
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=99.55 E-value=1.2e-13 Score=133.41 Aligned_cols=118 Identities=29% Similarity=0.438 Sum_probs=107.6
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc-CCCCEEE
Q 007940 17 GLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLE-MDLPVIM 95 (584)
Q Consensus 17 gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~-~~iPVIv 95 (584)
.++||||||++..+..+...|+..|+.+..+.++.+++..+... .||+||+|+.||+++|+++++.++.. +.+|+|+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~--~~dlvl~d~~~~~~~g~~~~~~l~~~~~~~~ii~ 80 (228)
T PRK11083 3 QPTILLVEDEQAIADTLVYALQSEGFTVEWFERGLPALDKLRQQ--PPDLVILDVGLPDISGFELCRQLLAFHPALPVIF 80 (228)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEE
Confidence 36999999999999999999999999999899999999988754 49999999999999999999999754 6899999
Q ss_pred EEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 007940 96 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 136 (584)
Q Consensus 96 lSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrr 136 (584)
++...+......+++.||++|+.||+...+|..+++.++++
T Consensus 81 ls~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 121 (228)
T PRK11083 81 LTARSDEVDRLVGLEIGADDYVAKPFSPREVAARVRTILRR 121 (228)
T ss_pred EEcCCcHHHHHHHhhcCCCeEEECCCCHHHHHHHHHHHHCc
Confidence 99998888889999999999999999999999999887754
No 35
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=99.55 E-value=2.3e-14 Score=166.57 Aligned_cols=119 Identities=29% Similarity=0.529 Sum_probs=110.5
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc--CCCC
Q 007940 15 PAGLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLE--MDLP 92 (584)
Q Consensus 15 p~gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~--~~iP 92 (584)
-.|.+||||||+...++..+.+|++.|.+|.++.++.+|++++.. ...||+||||++||.|||+|+.++||.. .++|
T Consensus 664 l~g~~iLlvddn~vn~~Va~~~l~~~g~~~~~~~sg~e~l~~~~~-~~~y~~ifmD~qMP~mDG~e~~~~irk~~~~~~p 742 (786)
T KOG0519|consen 664 LTGPKILLVDDNPVNRKVATGMLKKLGAEVTEVNSGQEALDKLKP-PHSYDVIFMDLQMPEMDGYEATREIRKKERWHLP 742 (786)
T ss_pred ccCCceEEEecccchHHHHHHHHHHhCCeeEeecCcHHHHHhcCC-CCcccEEEEEcCCcccchHHHHHHHHHhhcCCCC
Confidence 468999999999999999999999999999999999999999983 3469999999999999999999999755 4899
Q ss_pred EEEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHH
Q 007940 93 VIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVF 134 (584)
Q Consensus 93 VIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vl 134 (584)
||.+|+........+|++.|.++||.|||..+.|..++++.+
T Consensus 743 IvAlTa~~~~~~~~~c~~~Gmd~yl~KP~~~~~l~~~l~~~~ 784 (786)
T KOG0519|consen 743 IVALTADADPSTEEECLEVGMDGYLSKPFTLEKLVKILREFL 784 (786)
T ss_pred EEEEecCCcHHHHHHHHHhCCceEEcccccHHHHHHHHHHHh
Confidence 999999999999999999999999999999999998888765
No 36
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=99.55 E-value=1.1e-13 Score=138.09 Aligned_cols=119 Identities=20% Similarity=0.369 Sum_probs=103.9
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhC-CCeE-EEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCCEE
Q 007940 18 LRVLVVDDDLAWLKILEKMLKKC-SYEV-TTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGL-EMDLPVI 94 (584)
Q Consensus 18 mrVLIVDDd~~~r~~L~~lL~~~-gy~V-~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~-~~~iPVI 94 (584)
++||||||++..+..++.+|+.. ++.+ ..+.++.+++..+......||+||+|+.||+++|+++++.++. .+.+|||
T Consensus 2 ~~VLivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~a~~~~~~~~~~~DlvilD~~~p~~~G~eli~~l~~~~~~~~vI 81 (239)
T PRK10430 2 INVLIVDDDAMVAELNRRYVAQIPGFQCCGTASTLEQAKEIIFNSDTPIDLILLDIYMQQENGLDLLPVLHEAGCKSDVI 81 (239)
T ss_pred eeEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhcCCCCCEEEEecCCCCCCcHHHHHHHHhhCCCCCEE
Confidence 58999999999999999999864 5654 4788999999988632234999999999999999999999965 3678999
Q ss_pred EEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 007940 95 MMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 136 (584)
Q Consensus 95 vlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrr 136 (584)
++|+..+.....++++.||++||.||++.++|..++.++..+
T Consensus 82 ~ls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~l~~~i~~~~~~ 123 (239)
T PRK10430 82 VISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQK 123 (239)
T ss_pred EEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999876543
No 37
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=99.54 E-value=1e-13 Score=162.42 Aligned_cols=119 Identities=25% Similarity=0.423 Sum_probs=109.8
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc-----C
Q 007940 15 PAGLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLE-----M 89 (584)
Q Consensus 15 p~gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~-----~ 89 (584)
+.+++||||||++..+..+..+|+..|+.|.++.++.+|++.+.... ||+||+|+.||+|+|+++++.++.. +
T Consensus 688 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~~--~dlil~D~~mp~~~G~~~~~~ir~~~~~~~~ 765 (921)
T PRK15347 688 PWQLQILLVDDVETNRDIIGMMLVELGQQVTTAASGTEALELGRQHR--FDLVLMDIRMPGLDGLETTQLWRDDPNNLDP 765 (921)
T ss_pred cccCCEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHhchhhcCC
Confidence 45689999999999999999999999999999999999999987654 9999999999999999999999742 5
Q ss_pred CCCEEEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHH
Q 007940 90 DLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFR 135 (584)
Q Consensus 90 ~iPVIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlr 135 (584)
.+|||++|+..+.....++++.|+++||.||+...+|..++.++++
T Consensus 766 ~~pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 811 (921)
T PRK15347 766 DCMIVALTANAAPEEIHRCKKAGMNHYLTKPVTLAQLARALELAAE 811 (921)
T ss_pred CCcEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHh
Confidence 7899999999999999999999999999999999999999987764
No 38
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=99.53 E-value=1.7e-13 Score=134.27 Aligned_cols=119 Identities=18% Similarity=0.251 Sum_probs=106.2
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCC-e-EEEECCHHHHHHHHHhcCCCceEEEEecCCCC---CCHHHHHHHHhc-cCC
Q 007940 17 GLRVLVVDDDLAWLKILEKMLKKCSY-E-VTTCGLARDALSLLRERKDGYDIVISDVNMPD---MDGFKLLEHVGL-EMD 90 (584)
Q Consensus 17 gmrVLIVDDd~~~r~~L~~lL~~~gy-~-V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPd---mdGlELL~~Ir~-~~~ 90 (584)
+++||||||++..+..++.+|+..++ . +..+.++.+++..+.... ||+||+|+.||+ ++|+++++.++. .+.
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~--~DlvllD~~l~~~~~~~g~~~~~~l~~~~~~ 80 (216)
T PRK10840 3 NMNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPKLD--AHVLITDLSMPGDKYGDGITLIKYIKRHFPS 80 (216)
T ss_pred ceEEEEECCcHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhCC--CCEEEEeCcCCCCCCCCHHHHHHHHHHHCCC
Confidence 58999999999999999999988764 3 567899999999887644 999999999999 599999999964 468
Q ss_pred CCEEEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHhc
Q 007940 91 LPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 137 (584)
Q Consensus 91 iPVIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrrk 137 (584)
+|||++|...+......+++.||++|+.||.+..+|..+++.+..+.
T Consensus 81 ~~iIvls~~~~~~~~~~a~~~Ga~~yl~K~~~~~~l~~ai~~v~~g~ 127 (216)
T PRK10840 81 LSIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAALQKGK 127 (216)
T ss_pred CcEEEEEecCCHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999887554
No 39
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=99.53 E-value=1.3e-13 Score=163.36 Aligned_cols=119 Identities=29% Similarity=0.469 Sum_probs=110.5
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc-CCCCEE
Q 007940 16 AGLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLE-MDLPVI 94 (584)
Q Consensus 16 ~gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~-~~iPVI 94 (584)
.+++||||||++..+..++.+|+..||.|..+.++.+|++.+.... ||+||+|+.||+|+|+++++.|+.. +.+|||
T Consensus 800 ~~~~ILvVdD~~~~~~~l~~~L~~~G~~v~~a~~g~eal~~l~~~~--~DlVl~D~~mP~mdG~el~~~ir~~~~~~pII 877 (924)
T PRK10841 800 DDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNH--IDIVLTDVNMPNMDGYRLTQRLRQLGLTLPVI 877 (924)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhCC--CCEEEEcCCCCCCCHHHHHHHHHhcCCCCCEE
Confidence 5689999999999999999999999999999999999999998754 9999999999999999999999754 579999
Q ss_pred EEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 007940 95 MMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 136 (584)
Q Consensus 95 vlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrr 136 (584)
++|+....+...+++++|+++||.||++..+|..++.++.++
T Consensus 878 ~lTa~~~~~~~~~~~~aG~d~~L~KPv~~~~L~~~L~~~~~~ 919 (924)
T PRK10841 878 GVTANALAEEKQRCLEAGMDSCLSKPVTLDVLKQTLTVYAER 919 (924)
T ss_pred EEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999887654
No 40
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=99.53 E-value=1.2e-13 Score=161.70 Aligned_cols=120 Identities=26% Similarity=0.438 Sum_probs=110.6
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc---cCCC
Q 007940 15 PAGLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGL---EMDL 91 (584)
Q Consensus 15 p~gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~---~~~i 91 (584)
..+++||||||++..+..++.+|+..|+.|..+.++.+|++.+.... ||+||+|+.||+|+|+++++.|+. ...+
T Consensus 665 ~~~~~vLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~~~~~~--~dlil~D~~mp~~~g~~~~~~lr~~~~~~~~ 742 (919)
T PRK11107 665 RLPLTVMAVDDNPANLKLIGALLEEQVEHVVLCDSGHQAVEQAKQRP--FDLILMDIQMPGMDGIRACELIRQLPHNQNT 742 (919)
T ss_pred cCCCeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhCC--CCEEEEeCCCCCCcHHHHHHHHHhcccCCCC
Confidence 34689999999999999999999999999999999999999998754 999999999999999999999975 3578
Q ss_pred CEEEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 007940 92 PVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 136 (584)
Q Consensus 92 PVIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrr 136 (584)
|||++|+........++++.|+++||.||++..+|...+.+++..
T Consensus 743 pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 787 (919)
T PRK11107 743 PIIAVTAHAMAGERERLLSAGMDDYLAKPIDEAMLKQVLLRYKPG 787 (919)
T ss_pred CEEEEeCCCCHHHHHHHHHcCCCeEeeCCCCHHHHHHHHHHHccc
Confidence 999999999999999999999999999999999999998887654
No 41
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=99.51 E-value=4.1e-13 Score=128.17 Aligned_cols=117 Identities=19% Similarity=0.261 Sum_probs=106.6
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc-CCCCEEE
Q 007940 18 LRVLVVDDDLAWLKILEKMLKKCSYEVT-TCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLE-MDLPVIM 95 (584)
Q Consensus 18 mrVLIVDDd~~~r~~L~~lL~~~gy~V~-~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~-~~iPVIv 95 (584)
|+||||||++..+..+...|+..|+.+. .+.++.+++..+... .||+||+|+.||+++|+++++.++.. +..|+|+
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~--~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~ii~ 78 (204)
T PRK09958 1 MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETL--KPDIVIIDVDIPGVNGIQVLETLRKRQYSGIIII 78 (204)
T ss_pred CcEEEECCcHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHcc--CCCEEEEeCCCCCCCHHHHHHHHHhhCCCCeEEE
Confidence 6899999999999999999999899987 689999999988764 49999999999999999999999754 5789999
Q ss_pred EEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 007940 96 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 136 (584)
Q Consensus 96 lSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrr 136 (584)
+++..+......+++.||++|+.||++..+|..+++.++++
T Consensus 79 ls~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~ 119 (204)
T PRK09958 79 VSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 (204)
T ss_pred EeCCCCHHHHHHHHHCCCCEEEecCCCHHHHHHHHHHHHcC
Confidence 99998889999999999999999999999999999888754
No 42
>PLN03162 golden-2 like transcription factor; Provisional
Probab=99.50 E-value=2.4e-14 Score=148.06 Aligned_cols=66 Identities=52% Similarity=0.794 Sum_probs=62.7
Q ss_pred cccccccccchhHHHHHHHHHHHhcccccCHHHHHhhhCCCCCchHHHHhhhHHHHHHHHhhhhhh
Q 007940 197 STKKARVVWSIDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLTRLQKDE 262 (584)
Q Consensus 197 s~KK~rvvws~eLhqkFv~av~~iG~s~~~Pk~Il~~m~v~~Lt~~~V~sHlqkyr~~~~RL~~~~ 262 (584)
..||+|++||++||++|++||++||.++++||.|+++|+|.+||+++|+|||||||+|++|+..++
T Consensus 232 g~KKpRLrWTpELH~rFVeAV~qLG~dKATPK~ILelMnV~GLTRenVKSHLQKYRl~rk~l~~rE 297 (526)
T PLN03162 232 GKKKAKVDWTPELHRRFVHAVEQLGVEKAFPSRILELMGVQCLTRHNIASHLQKYRSHRRHLAARE 297 (526)
T ss_pred CCCCCcccCCHHHHHHHHHHHHHhCcCccchHHHHHHcCCCCcCHHHHHHHHHHHHHhcccccchh
Confidence 468899999999999999999999999999999999999999999999999999999999987664
No 43
>PRK11697 putative two-component response-regulatory protein YehT; Provisional
Probab=99.49 E-value=4.7e-13 Score=132.14 Aligned_cols=115 Identities=26% Similarity=0.415 Sum_probs=97.9
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhCC-Ce-EEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCCEEE
Q 007940 18 LRVLVVDDDLAWLKILEKMLKKCS-YE-VTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIM 95 (584)
Q Consensus 18 mrVLIVDDd~~~r~~L~~lL~~~g-y~-V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVIv 95 (584)
++|+||||++..+..+..+|+..+ +. +..+.++.+++..+... .||+||+|+.||+++|+++++.++.....++|+
T Consensus 2 ~~IlIvdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~--~~dlv~lDi~~~~~~G~~~~~~l~~~~~~~ii~ 79 (238)
T PRK11697 2 IKVLIVDDEPLAREELRELLQEEGDIEIVGECSNAIEAIGAIHRL--KPDVVFLDIQMPRISGLELVGMLDPEHMPYIVF 79 (238)
T ss_pred cEEEEECCCHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHhcccCCCEEEE
Confidence 699999999999999999999887 34 34688999999988764 399999999999999999999986433446777
Q ss_pred EEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 007940 96 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 136 (584)
Q Consensus 96 lSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrr 136 (584)
+|+.. +.+.++++.||.+||.||+..++|..++.++.+.
T Consensus 80 vt~~~--~~~~~a~~~~~~~yl~KP~~~~~l~~~l~~~~~~ 118 (238)
T PRK11697 80 VTAFD--EYAIKAFEEHAFDYLLKPIDPARLAKTLARLRQE 118 (238)
T ss_pred EeccH--HHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHh
Confidence 77764 4678999999999999999999999999887653
No 44
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=99.49 E-value=3.6e-13 Score=158.10 Aligned_cols=120 Identities=23% Similarity=0.343 Sum_probs=110.2
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCCEE
Q 007940 16 AGLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGL-EMDLPVI 94 (584)
Q Consensus 16 ~gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~-~~~iPVI 94 (584)
.+++||||||++..+..+..+|+..|+.|.++.++.+|+..+... ..||+||+|+.||+|+|+++++.++. .+.+|||
T Consensus 680 ~~~~vLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~-~~~Dlvl~D~~mp~~~G~~~~~~lr~~~~~~~ii 758 (914)
T PRK11466 680 DGLRLLLIEDNPLTQRITAEMLNTSGAQVVAVGNAAQALETLQNS-EPFAAALVDFDLPDYDGITLARQLAQQYPSLVLI 758 (914)
T ss_pred CCcceEEEeCCHHHHHHHHHHHHhcCCceEEeCCHHHHHHHHHcC-CCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEE
Confidence 568999999999999999999999999999999999999988642 34899999999999999999999975 4689999
Q ss_pred EEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 007940 95 MMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 136 (584)
Q Consensus 95 vlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrr 136 (584)
++|+........++++.|+++||.||++.++|..++.++++.
T Consensus 759 ~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 800 (914)
T PRK11466 759 GFSAHVIDETLRQRTSSLFRGIIPKPVPREVLGQLLAHYLQL 800 (914)
T ss_pred EEeCCCchhhHHHHHhcCcCCEEeCCCCHHHHHHHHHHHhhh
Confidence 999999888899999999999999999999999999988754
No 45
>TIGR02875 spore_0_A sporulation transcription factor Spo0A. Spo0A, the stage 0 sporulation protein A, is a transcription factor critical for the initiation of sporulation. It contains a response regulator receiver domain (pfam00072). In Bacillus subtilis, it works together with response regulator Spo0F and the phosphotransferase Spo0B, both of which are missing from at least some sporulating species and thus not part of the endospore forming bacteria minimal gene set. Spo0A, however, is universal among endospore-forming species.
Probab=99.49 E-value=6.1e-13 Score=134.14 Aligned_cols=118 Identities=29% Similarity=0.458 Sum_probs=104.0
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhC-CCeEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc-C--CC
Q 007940 17 GLRVLVVDDDLAWLKILEKMLKKC-SYEVT-TCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLE-M--DL 91 (584)
Q Consensus 17 gmrVLIVDDd~~~r~~L~~lL~~~-gy~V~-~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~-~--~i 91 (584)
.++||||||++..+..+...|+.. ++.+. ++.++.++++.+.... ||+||+|+.||+++|+++++.++.. . ..
T Consensus 2 ~~~vLivdd~~~~~~~l~~~L~~~~~~~~~~~a~~~~eal~~l~~~~--~DlvllD~~mp~~dG~~~l~~i~~~~~~~~~ 79 (262)
T TIGR02875 2 KIRIVIADDNKEFCNLLKEYLAAQPDMEVVGVAHNGVDALELIKEQQ--PDVVVLDIIMPHLDGIGVLEKLNEIELSARP 79 (262)
T ss_pred CcEEEEEcCCHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHhhccccCC
Confidence 579999999999999999999864 45544 7899999999988754 9999999999999999999999753 2 37
Q ss_pred CEEEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 007940 92 PVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 136 (584)
Q Consensus 92 PVIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrr 136 (584)
|||++|+.........+++.|+++|+.||++..+|...+++++.+
T Consensus 80 ~iI~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~~~~ 124 (262)
T TIGR02875 80 RVIMLSAFGQEKITQRAVALGADYYVLKPFDLEILAARIRQLAWG 124 (262)
T ss_pred eEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHcc
Confidence 899999999989899999999999999999999999999887654
No 46
>PRK14084 two-component response regulator; Provisional
Probab=99.48 E-value=1e-12 Score=130.82 Aligned_cols=115 Identities=23% Similarity=0.386 Sum_probs=99.1
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhCC-C-eEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc-CCCCEE
Q 007940 18 LRVLVVDDDLAWLKILEKMLKKCS-Y-EVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLE-MDLPVI 94 (584)
Q Consensus 18 mrVLIVDDd~~~r~~L~~lL~~~g-y-~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~-~~iPVI 94 (584)
|+||||||++..+..+..+|+..+ + .+..+.++.+++..+.+. .||+|++|+.||+++|+++++.++.. ...++|
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~~l~~~~~~--~~dlv~lDi~m~~~~G~~~~~~i~~~~~~~~iI 78 (246)
T PRK14084 1 MKALIVDDEPLARNELTYLLNEIGGFEEINEAENVKETLEALLIN--QYDIIFLDINLMDESGIELAAKIQKMKEPPAII 78 (246)
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEE
Confidence 689999999999999999999866 4 466889999999988764 49999999999999999999999754 455677
Q ss_pred EEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 007940 95 MMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 136 (584)
Q Consensus 95 vlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrr 136 (584)
++|+.. ....++++.||.+||.||+..++|..+++++.++
T Consensus 79 ~~t~~~--~~~~~~~~~~~~~yl~KP~~~~~l~~~l~~~~~~ 118 (246)
T PRK14084 79 FATAHD--QFAVKAFELNATDYILKPFEQKRIEQAVNKVRAT 118 (246)
T ss_pred EEecCh--HHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHh
Confidence 777664 4567999999999999999999999999887654
No 47
>PRK09483 response regulator; Provisional
Probab=99.47 E-value=9.4e-13 Score=126.86 Aligned_cols=118 Identities=26% Similarity=0.367 Sum_probs=106.2
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhC-CCeEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCCEE
Q 007940 18 LRVLVVDDDLAWLKILEKMLKKC-SYEVT-TCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGL-EMDLPVI 94 (584)
Q Consensus 18 mrVLIVDDd~~~r~~L~~lL~~~-gy~V~-~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~-~~~iPVI 94 (584)
++||||||++..+..++.+|+.. ++.++ .+.++.+++..+.... ||+||+|+.||+++|+++++.++. .+.+|+|
T Consensus 2 ~~ilivd~~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~--~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~ii 79 (217)
T PRK09483 2 INVLLVDDHELVRAGIRRILEDIKGIKVVGEACCGEDAVKWCRTNA--VDVVLMDMNMPGIGGLEATRKILRYTPDVKII 79 (217)
T ss_pred eEEEEECCcHHHHHHHHHHHccCCCCEEEEEeCCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHHHCCCCeEE
Confidence 58999999999999999999875 78775 7889999999887644 999999999999999999999864 4679999
Q ss_pred EEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHhc
Q 007940 95 MMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 137 (584)
Q Consensus 95 vlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrrk 137 (584)
+++...+......++..||++|+.||+..++|..++++++++.
T Consensus 80 ~ls~~~~~~~~~~~~~~g~~~~l~k~~~~~~l~~~i~~~~~g~ 122 (217)
T PRK09483 80 MLTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVHSGQ 122 (217)
T ss_pred EEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCC
Confidence 9999999889999999999999999999999999999887654
No 48
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=99.47 E-value=3.8e-13 Score=125.65 Aligned_cols=112 Identities=23% Similarity=0.454 Sum_probs=104.6
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc-CCCCEEEEE
Q 007940 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLE-MDLPVIMMS 97 (584)
Q Consensus 19 rVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~-~~iPVIvlS 97 (584)
..||||||..+++.|...+++.||.|.++.+.++|+..++... |.-.++|+.|-+.+|+++++.|+.. .+..||++|
T Consensus 11 ~lllvdDD~~f~~~LaRa~e~RGf~v~~a~~~~eal~~art~~--PayAvvDlkL~~gsGL~~i~~lr~~~~d~rivvLT 88 (182)
T COG4567 11 SLLLVDDDTPFLRTLARAMERRGFAVVTAESVEEALAAARTAP--PAYAVVDLKLGDGSGLAVIEALRERRADMRIVVLT 88 (182)
T ss_pred eeEEecCChHHHHHHHHHHhccCceeEeeccHHHHHHHHhcCC--CceEEEEeeecCCCchHHHHHHHhcCCcceEEEEe
Confidence 6899999999999999999999999999999999999998854 9999999999999999999999754 688999999
Q ss_pred cCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHH
Q 007940 98 VDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQH 132 (584)
Q Consensus 98 a~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~ 132 (584)
+++....+++|+++||++||.||-+..++.+++.+
T Consensus 89 Gy~sIATAV~AvKlGA~~YLaKPAdaDdi~aAl~~ 123 (182)
T COG4567 89 GYASIATAVEAVKLGACDYLAKPADADDILAALLR 123 (182)
T ss_pred cchHHHHHHHHHHhhhhhhcCCCCChHHHHHHHhh
Confidence 99999999999999999999999999998877654
No 49
>PRK15115 response regulator GlrR; Provisional
Probab=99.47 E-value=7.6e-13 Score=143.85 Aligned_cols=119 Identities=29% Similarity=0.513 Sum_probs=109.1
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCCEE
Q 007940 16 AGLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGL-EMDLPVI 94 (584)
Q Consensus 16 ~gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~-~~~iPVI 94 (584)
...+||||||++..+..+...|+..||.|..+.++.+|+..+... .||+||+|+.||+++|+++++.++. .+.+|||
T Consensus 4 ~~~~vLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~eal~~l~~~--~~dlvilD~~lp~~~g~~ll~~l~~~~~~~pvI 81 (444)
T PRK15115 4 KPAHLLLVDDDPGLLKLLGMRLTSEGYSVVTAESGQEALRVLNRE--KVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVI 81 (444)
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcC--CCCEEEEcCCCCCCCHHHHHHHHHhcCCCCcEE
Confidence 357999999999999999999999999999999999999988764 4999999999999999999999864 4678999
Q ss_pred EEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 007940 95 MMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 136 (584)
Q Consensus 95 vlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrr 136 (584)
++|+..+.....++++.||.+|+.||+...+|...+.++++.
T Consensus 82 vlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~l~~~~~~ 123 (444)
T PRK15115 82 ILTAHGSIPDAVAATQQGVFSFLTKPVDRDALYKAIDDALEQ 123 (444)
T ss_pred EEECCCCHHHHHHHHhcChhhhccCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999887754
No 50
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=99.47 E-value=1.2e-12 Score=124.11 Aligned_cols=115 Identities=29% Similarity=0.422 Sum_probs=102.7
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhC-CCe-EEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCCEEE
Q 007940 18 LRVLVVDDDLAWLKILEKMLKKC-SYE-VTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIM 95 (584)
Q Consensus 18 mrVLIVDDd~~~r~~L~~lL~~~-gy~-V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVIv 95 (584)
++||||||++..+..+...|+.. ++. +..+.++.+++..+... .||+||+|+.||+++|+++++.++ +.+|||+
T Consensus 2 ~~ilivd~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~l~~~~~~--~~dlvi~d~~~~~~~g~~~~~~l~--~~~~vi~ 77 (196)
T PRK10360 2 ITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGR--GVQVCICDISMPDISGLELLSQLP--KGMATIM 77 (196)
T ss_pred eEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHc--cCCCEEE
Confidence 48999999999999999999854 555 45788999999988764 399999999999999999999986 3689999
Q ss_pred EEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 007940 96 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 136 (584)
Q Consensus 96 lSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrr 136 (584)
++..........+++.||++|+.||+..++|..++++++++
T Consensus 78 ~s~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~ 118 (196)
T PRK10360 78 LSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATG 118 (196)
T ss_pred EECCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcC
Confidence 99999889999999999999999999999999999988764
No 51
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.47 E-value=2.9e-13 Score=144.63 Aligned_cols=118 Identities=26% Similarity=0.478 Sum_probs=105.7
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc---CCCC
Q 007940 16 AGLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLE---MDLP 92 (584)
Q Consensus 16 ~gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~---~~iP 92 (584)
...+||||||++..+..+..+|.. .+.+..+.++.+|+..+.+.+ ||+||+|+.||+|+|+++++.++.. +.+|
T Consensus 154 ~~~~vlivdd~~~~~~~l~~~l~~-~~~~~~~~~~~~a~~~~~~~~--~d~vi~d~~~p~~~g~~l~~~i~~~~~~~~~~ 230 (457)
T PRK09581 154 EDGRILLVDDDVSQAERIANILKE-EFRVVVVSDPSEALFNAAETN--YDLVIVSANFENYDPLRLCSQLRSKERTRYVP 230 (457)
T ss_pred cCceEEEEecccchHHHHHHHHhh-cceeeeecChHHHHHhcccCC--CCEEEecCCCCCchHhHHHHHHHhccccCCCc
Confidence 467999999999999999999975 467778899999999876644 9999999999999999999999742 6899
Q ss_pred EEEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 007940 93 VIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 136 (584)
Q Consensus 93 VIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrr 136 (584)
||++|+..+.+.+.+|++.||+|||.||++.++|...+....++
T Consensus 231 ii~ls~~~~~~~~~~a~~~Ga~d~l~kp~~~~~l~~~i~~~~~~ 274 (457)
T PRK09581 231 ILLLVDEDDDPRLVKALELGVNDYLMRPIDKNELLARVRTQIRR 274 (457)
T ss_pred EEEEeCCCChHHHHHHHHccchhhhhCCCcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999888776553
No 52
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.46 E-value=6.4e-13 Score=143.86 Aligned_cols=119 Identities=30% Similarity=0.599 Sum_probs=109.1
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCCEE
Q 007940 16 AGLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGL-EMDLPVI 94 (584)
Q Consensus 16 ~gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~-~~~iPVI 94 (584)
..++||||||++..+..+...|+..|+.|.++.++.+++..+... .||+||+|+.||+++|+++++.++. .+.+|||
T Consensus 4 ~~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~--~~DlvilD~~m~~~~G~~~~~~ir~~~~~~~vi 81 (441)
T PRK10365 4 DNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQ--VFDLVLCDVRMAEMDGIATLKEIKALNPAIPVL 81 (441)
T ss_pred CcceEEEEECCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHhhCCCCeEE
Confidence 458999999999999999999999999999999999999988764 4999999999999999999999964 4678999
Q ss_pred EEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 007940 95 MMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 136 (584)
Q Consensus 95 vlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrr 136 (584)
++|+..+.+.+.++++.||.+|+.||+...+|...+.+++.+
T Consensus 82 ~lt~~~~~~~~~~a~~~ga~~~l~Kp~~~~~L~~~l~~~l~~ 123 (441)
T PRK10365 82 IMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAH 123 (441)
T ss_pred EEECCCCHHHHHHHHHhhhHHHhcCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999887754
No 53
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=99.46 E-value=2e-12 Score=126.32 Aligned_cols=118 Identities=25% Similarity=0.450 Sum_probs=107.9
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCCEEEE
Q 007940 17 GLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMM 96 (584)
Q Consensus 17 gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVIvl 96 (584)
..+||||||++..+..+...|+..++.+..+.++.+++..+... .||+||+|+.||+++|+++++.++....+|+|++
T Consensus 10 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~--~~dlvl~d~~~~~~~g~~~~~~l~~~~~~pii~l 87 (240)
T PRK10710 10 TPRILIVEDEPKLGQLLIDYLQAASYATTLLSHGDEVLPYVRQT--PPDLILLDLMLPGTDGLTLCREIRRFSDIPIVMV 87 (240)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhC--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEE
Confidence 34999999999999999999999999999999999999988764 3999999999999999999999987678999999
Q ss_pred EcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 007940 97 SVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 136 (584)
Q Consensus 97 Sa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrr 136 (584)
+...+......++++||++|+.||+...+|..+++.++++
T Consensus 88 ~~~~~~~~~~~~~~~ga~~~l~kp~~~~~L~~~i~~~~~~ 127 (240)
T PRK10710 88 TAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 (240)
T ss_pred EcCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHHhh
Confidence 9988888888999999999999999999999988887754
No 54
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.46 E-value=9.8e-13 Score=143.22 Aligned_cols=120 Identities=32% Similarity=0.512 Sum_probs=109.5
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCCE
Q 007940 15 PAGLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGL-EMDLPV 93 (584)
Q Consensus 15 p~gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~-~~~iPV 93 (584)
+.+.+||||||++..+..+...|+..||.|.++.++.+|+..+.... ||+||+|+.||+++|+++++.++. .+.+||
T Consensus 2 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~--~dlillD~~~p~~~g~~ll~~i~~~~~~~pv 79 (457)
T PRK11361 2 TAINRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIH--PDVVLMDIRMPEMDGIKALKEMRSHETRTPV 79 (457)
T ss_pred CCCCeEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCCCE
Confidence 45679999999999999999999999999999999999999987644 999999999999999999999864 468999
Q ss_pred EEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 007940 94 IMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 136 (584)
Q Consensus 94 IvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrr 136 (584)
|++|+..+......+++.||.||+.||+..++|...+++++..
T Consensus 80 I~lt~~~~~~~~~~a~~~Ga~d~l~KP~~~~~L~~~i~~~l~~ 122 (457)
T PRK11361 80 ILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQL 122 (457)
T ss_pred EEEeCCCCHHHHHHHHHCCccEEEecccCHHHHHHHHhhhccc
Confidence 9999999999999999999999999999999999988877643
No 55
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=99.45 E-value=8.8e-13 Score=152.75 Aligned_cols=119 Identities=21% Similarity=0.375 Sum_probs=105.3
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc---CC-
Q 007940 15 PAGLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLE---MD- 90 (584)
Q Consensus 15 p~gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~---~~- 90 (584)
..+++||||||++..+..+..+|+..||.|.++.++.+|++.+... .||+||+|+.||+|+|+++++.|+.. ..
T Consensus 523 ~~~~~ILivdD~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~--~~Dlvl~D~~mp~~~G~e~~~~ir~~~~~~~~ 600 (779)
T PRK11091 523 LPALNILLVEDIELNVIVARSVLEKLGNSVDVAMTGKEALEMFDPD--EYDLVLLDIQLPDMTGLDIARELRERYPREDL 600 (779)
T ss_pred ccccceEEEcCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHhhcC--CCCEEEEcCCCCCCCHHHHHHHHHhccccCCC
Confidence 3468999999999999999999999999999999999999999754 49999999999999999999999754 34
Q ss_pred CCEEEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 007940 91 LPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 136 (584)
Q Consensus 91 iPVIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrr 136 (584)
.|||++|+.... ....+++.|+++||.||+...+|..++++++..
T Consensus 601 ~~ii~~ta~~~~-~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 645 (779)
T PRK11091 601 PPLVALTANVLK-DKKEYLDAGMDDVLSKPLSVPALTAMIKKFWDT 645 (779)
T ss_pred CcEEEEECCchH-hHHHHHHCCCCEEEECCCCHHHHHHHHHHHhcc
Confidence 488989887654 467899999999999999999999999888744
No 56
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.45 E-value=1.5e-12 Score=142.65 Aligned_cols=118 Identities=31% Similarity=0.472 Sum_probs=108.8
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCCEEE
Q 007940 17 GLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGL-EMDLPVIM 95 (584)
Q Consensus 17 gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~-~~~iPVIv 95 (584)
..+||||||++..+..+..+|+..||.|..+.++.+|+..+.... ||+||+|+.||+++|+++++.++. .+.+|||+
T Consensus 3 ~~~ILiVdd~~~~~~~L~~~L~~~g~~v~~~~s~~~al~~l~~~~--~DlvllD~~lp~~dgl~~l~~ir~~~~~~pvIv 80 (469)
T PRK10923 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLEALASKT--PDVLLSDIRMPGMDGLALLKQIKQRHPMLPVII 80 (469)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcCC--CCEEEECCCCCCCCHHHHHHHHHhhCCCCeEEE
Confidence 359999999999999999999999999999999999999998644 999999999999999999999964 36789999
Q ss_pred EEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 007940 96 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 136 (584)
Q Consensus 96 lSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrr 136 (584)
+|+..+......+++.||.+|+.||+...+|...+.+++..
T Consensus 81 lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~ 121 (469)
T PRK10923 81 MTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 (469)
T ss_pred EECCCCHHHHHHHHhcCcceEEecCCcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999887754
No 57
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=99.44 E-value=9.9e-13 Score=155.09 Aligned_cols=119 Identities=23% Similarity=0.341 Sum_probs=109.2
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc-CC---C
Q 007940 16 AGLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLE-MD---L 91 (584)
Q Consensus 16 ~gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~-~~---i 91 (584)
.+.+||||||++..+..++.+|+..||.|.++.++.+|++.+... .||+||+|+.||+|+|+++++.|+.. .. +
T Consensus 701 ~~~~iLvvdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlvl~D~~mp~~~g~~~~~~ir~~~~~~~~~ 778 (968)
T TIGR02956 701 PPQRVLLVEDNEVNQMVAQGFLTRLGHKVTLAESGQSALECFHQH--AFDLALLDINLPDGDGVTLLQQLRAIYGAKNEV 778 (968)
T ss_pred cccceEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHCC--CCCEEEECCCCCCCCHHHHHHHHHhCccccCCC
Confidence 356899999999999999999999999999999999999999874 49999999999999999999999753 22 8
Q ss_pred CEEEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 007940 92 PVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 136 (584)
Q Consensus 92 PVIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrr 136 (584)
|||++|+.........+++.|+++||.||++..+|...+.+++..
T Consensus 779 pii~lta~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 823 (968)
T TIGR02956 779 KFIAFSAHVFNEDVAQYLAAGFDGFLAKPVVEEQLTAMIAVILAG 823 (968)
T ss_pred eEEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999887753
No 58
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=99.44 E-value=2.9e-12 Score=122.16 Aligned_cols=118 Identities=21% Similarity=0.347 Sum_probs=105.1
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhC-CCeEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCCE
Q 007940 17 GLRVLVVDDDLAWLKILEKMLKKC-SYEVT-TCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGL-EMDLPV 93 (584)
Q Consensus 17 gmrVLIVDDd~~~r~~L~~lL~~~-gy~V~-~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~-~~~iPV 93 (584)
..+||||||++..+..+...|+.. ++.+. .+.++.+++..+... .||+||+|+.||+++|+++++.++. .+.+||
T Consensus 3 ~~~iliv~d~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlvild~~l~~~~g~~~~~~l~~~~~~~~i 80 (210)
T PRK09935 3 PASVIIMDTHPIIRMSIEVLLQKNSELQIVLKTDDYRITIDYLRTR--PVDLIIMDIDLPGTDGFTFLKRIKQIQSTVKV 80 (210)
T ss_pred cceEEEECCcHHHHHHHHHHHhhCCCceEEEEeCCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHHhCCCCcE
Confidence 468999999999999999999877 47765 678899999988754 4999999999999999999999975 367899
Q ss_pred EEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 007940 94 IMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 136 (584)
Q Consensus 94 IvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrr 136 (584)
|++|+..+......++..||++|+.||+...+|..+++.++.+
T Consensus 81 i~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~l~~ 123 (210)
T PRK09935 81 LFLSSKSECFYAGRAIQAGANGFVSKCNDQNDIFHAVQMILSG 123 (210)
T ss_pred EEEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHcC
Confidence 9999998888899999999999999999999999999887764
No 59
>PRK15479 transcriptional regulatory protein TctD; Provisional
Probab=99.44 E-value=3.3e-12 Score=122.70 Aligned_cols=118 Identities=30% Similarity=0.514 Sum_probs=106.7
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc-CCCCEEEE
Q 007940 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLE-MDLPVIMM 96 (584)
Q Consensus 18 mrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~-~~iPVIvl 96 (584)
|+||++||++..+..+...|+..++.+..+.++.+++..+... .||+||+|+.||+++|+++++.++.. +.+|+|++
T Consensus 1 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~--~~d~vild~~~~~~~~~~~~~~i~~~~~~~~ii~l 78 (221)
T PRK15479 1 MRLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLQSE--MYALAVLDINMPGMDGLEVLQRLRKRGQTLPVLLL 78 (221)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhC--CCCEEEEeCCCCCCcHHHHHHHHHhcCCCCCEEEE
Confidence 5899999999999999999999999998999999998887654 49999999999999999999999654 57899999
Q ss_pred EcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHhc
Q 007940 97 SVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 137 (584)
Q Consensus 97 Sa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrrk 137 (584)
+...+.....++++.||++|+.||+...+|...++.++++.
T Consensus 79 t~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~~~ 119 (221)
T PRK15479 79 TARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLRRS 119 (221)
T ss_pred ECCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHhhh
Confidence 99988888899999999999999999999999998877643
No 60
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=99.42 E-value=1.8e-12 Score=156.67 Aligned_cols=119 Identities=28% Similarity=0.492 Sum_probs=109.5
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc-CCCCE
Q 007940 15 PAGLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLE-MDLPV 93 (584)
Q Consensus 15 p~gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~-~~iPV 93 (584)
+..++||||||++..+..+..+|+..|++|..+.++.+|++.+... .||+||+|+.||+|+|+++++.++.. +.+||
T Consensus 956 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~dlil~D~~mp~~~g~~~~~~i~~~~~~~pi 1033 (1197)
T PRK09959 956 PEKLSILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQ--HYDLLITDVNMPNMDGFELTRKLREQNSSLPI 1033 (1197)
T ss_pred ccCceEEEcCCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHhhcC--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCE
Confidence 4568999999999999999999999999999999999999999764 49999999999999999999999754 67899
Q ss_pred EEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHH
Q 007940 94 IMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFR 135 (584)
Q Consensus 94 IvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlr 135 (584)
|++|+..+.....++++.||++||.||++.++|..+++++..
T Consensus 1034 i~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 1075 (1197)
T PRK09959 1034 WGLTANAQANEREKGLSCGMNLCLFKPLTLDVLKTHLSQLHQ 1075 (1197)
T ss_pred EEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999998887654
No 61
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=99.41 E-value=1.5e-11 Score=105.02 Aligned_cols=120 Identities=33% Similarity=0.589 Sum_probs=105.3
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHHhCCCe-EEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc---CC
Q 007940 15 PAGLRVLVVDDDLAWLKILEKMLKKCSYE-VTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLE---MD 90 (584)
Q Consensus 15 p~gmrVLIVDDd~~~r~~L~~lL~~~gy~-V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~---~~ 90 (584)
.+.++|+++++++..+..+...|+..++. +..+.++.+++..+... .+|++++|..+++++|+++++.++.. +.
T Consensus 3 ~~~~~il~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~di~l~d~~~~~~~~~~~~~~l~~~~~~~~ 80 (129)
T PRK10610 3 DKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GFGFVISDWNMPNMDGLELLKTIRADGAMSA 80 (129)
T ss_pred cccceEEEEcCCHHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHhhcc--CCCEEEEcCCCCCCCHHHHHHHHHhCCCcCC
Confidence 34689999999999999999999988884 67788999999887664 49999999999999999999999643 46
Q ss_pred CCEEEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 007940 91 LPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 136 (584)
Q Consensus 91 iPVIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrr 136 (584)
+|+|+++..........+++.|+.+|+.||++..++...+++++++
T Consensus 81 ~~~i~~~~~~~~~~~~~~~~~g~~~~i~~p~~~~~l~~~l~~~~~~ 126 (129)
T PRK10610 81 LPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 126 (129)
T ss_pred CcEEEEECCCCHHHHHHHHHhCCCeEEECCCCHHHHHHHHHHHHHH
Confidence 8999999888888889999999999999999999999988887653
No 62
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.41 E-value=2.8e-12 Score=139.48 Aligned_cols=113 Identities=27% Similarity=0.442 Sum_probs=103.1
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCC-----CCHHHHHHHHhc-cCCCCE
Q 007940 20 VLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPD-----MDGFKLLEHVGL-EMDLPV 93 (584)
Q Consensus 20 VLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPd-----mdGlELL~~Ir~-~~~iPV 93 (584)
||||||++..+..+...| .||.|.++.++.+|++.+... .||+||+|+.||+ ++|+++++.++. .+.+||
T Consensus 1 ILivddd~~~~~~l~~~l--~~~~v~~a~~~~~al~~l~~~--~~dlvllD~~mp~~~~~~~~g~~~l~~i~~~~~~~pi 76 (445)
T TIGR02915 1 LLIVEDDLGLQKQLKWSF--ADYELAVAADRESAIALVRRH--EPAVVTLDLGLPPDADGASEGLAALQQILAIAPDTKV 76 (445)
T ss_pred CEEEECCHHHHHHHHHHh--CCCeEEEeCCHHHHHHHHhhC--CCCEEEEeCCCCCCcCCCCCHHHHHHHHHhhCCCCCE
Confidence 689999999999999988 689999999999999999875 4999999999996 899999999864 467999
Q ss_pred EEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 007940 94 IMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 136 (584)
Q Consensus 94 IvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrr 136 (584)
|++|+..+.+...++++.||+|||.||++.++|..++++++..
T Consensus 77 I~lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~~~~ 119 (445)
T TIGR02915 77 IVITGNDDRENAVKAIGLGAYDFYQKPIDPDVLKLIVDRAFHL 119 (445)
T ss_pred EEEecCCCHHHHHHHHHCCccEEEeCCCCHHHHHHHHhhhhhh
Confidence 9999999999999999999999999999999999998887653
No 63
>PRK13435 response regulator; Provisional
Probab=99.40 E-value=7.1e-12 Score=114.60 Aligned_cols=117 Identities=21% Similarity=0.306 Sum_probs=101.3
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEecCCC-CCCHHHHHHHHhccCCCCE
Q 007940 16 AGLRVLVVDDDLAWLKILEKMLKKCSYEVT-TCGLARDALSLLRERKDGYDIVISDVNMP-DMDGFKLLEHVGLEMDLPV 93 (584)
Q Consensus 16 ~gmrVLIVDDd~~~r~~L~~lL~~~gy~V~-~a~~~~eAL~~L~~~~~~pDLVIlDi~MP-dmdGlELL~~Ir~~~~iPV 93 (584)
..++|||+|+++..+..+...|+..|+.+. .+.++.++++.+... .||+||+|+.++ +++|+++++.++....+|+
T Consensus 4 ~~~~iliid~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~dliivd~~~~~~~~~~~~~~~l~~~~~~pi 81 (145)
T PRK13435 4 RQLKVLIVEDEALIALELEKLVEEAGHEVVGIAMSSEQAIALGRRR--QPDVALVDVHLADGPTGVEVARRLSADGGVEV 81 (145)
T ss_pred ccceEEEEcCcHHHHHHHHHHHHhcCCeEEEeeCCHHHHHHHhhhc--CCCEEEEeeecCCCCcHHHHHHHHHhCCCCCE
Confidence 467999999999999999999998899876 788999999988654 499999999998 5899999999876678999
Q ss_pred EEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHhc
Q 007940 94 IMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 137 (584)
Q Consensus 94 IvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrrk 137 (584)
|+++...+ ...++..||++|+.||++..+|...++++..++
T Consensus 82 i~ls~~~~---~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~ 122 (145)
T PRK13435 82 VFMTGNPE---RVPHDFAGALGVIAKPYSPRGVARALSYLSARR 122 (145)
T ss_pred EEEeCCHH---HHHHHhcCcceeEeCCCCHHHHHHHHHHHHhcC
Confidence 99987643 246788999999999999999999998887554
No 64
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.39 E-value=4.5e-12 Score=138.44 Aligned_cols=115 Identities=36% Similarity=0.545 Sum_probs=105.7
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCCEEEEEc
Q 007940 20 VLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGL-EMDLPVIMMSV 98 (584)
Q Consensus 20 VLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~-~~~iPVIvlSa 98 (584)
||||||++..+..+...|+..||.|..+.++.+|+..+... .||+||+|+.||+++|+++++.++. .+.+|||++|+
T Consensus 1 ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~DlVllD~~~p~~~g~~ll~~l~~~~~~~~vIvlt~ 78 (463)
T TIGR01818 1 VWVVDDDRSIRWVLEKALSRAGYEVRTFGNAASVLRALARG--QPDLLITDVRMPGEDGLDLLPQIKKRHPQLPVIVMTA 78 (463)
T ss_pred CEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcC--CCCEEEEcCCCCCCCHHHHHHHHHHhCCCCeEEEEeC
Confidence 68999999999999999999999999999999999988764 4999999999999999999999964 36789999999
Q ss_pred CCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 007940 99 DGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 136 (584)
Q Consensus 99 ~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrr 136 (584)
..+.....++++.||++|+.||+..++|..++++++..
T Consensus 79 ~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~ 116 (463)
T TIGR01818 79 HSDLDTAVAAYQRGAFEYLPKPFDLDEAVTLVERALAH 116 (463)
T ss_pred CCCHHHHHHHHHcCcceeecCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999887653
No 65
>PRK09390 fixJ response regulator FixJ; Provisional
Probab=99.38 E-value=7.6e-12 Score=117.24 Aligned_cols=119 Identities=29% Similarity=0.431 Sum_probs=106.8
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCCEE
Q 007940 16 AGLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGL-EMDLPVI 94 (584)
Q Consensus 16 ~gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~-~~~iPVI 94 (584)
.+.+||||||++..+..+...|+..++.+..+.++.+++..+... .||+||+|+.||+++|+++++.++. .+.+|+|
T Consensus 2 ~~~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~--~~d~ii~d~~~~~~~~~~~~~~l~~~~~~~~ii 79 (202)
T PRK09390 2 DKGVVHVVDDDEAMRDSLAFLLDSAGFEVRLFESAQAFLDALPGL--RFGCVVTDVRMPGIDGIELLRRLKARGSPLPVI 79 (202)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHhccC--CCCEEEEeCCCCCCcHHHHHHHHHhcCCCCCEE
Confidence 457999999999999999999999999999999999999888754 3999999999999999999999964 3678999
Q ss_pred EEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 007940 95 MMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 136 (584)
Q Consensus 95 vlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrr 136 (584)
+++...+......+++.|+.+|+.||+...++...+..++..
T Consensus 80 ~l~~~~~~~~~~~~~~~g~~~~l~~p~~~~~l~~~l~~~~~~ 121 (202)
T PRK09390 80 VMTGHGDVPLAVEAMKLGAVDFIEKPFEDERLIGAIERALAQ 121 (202)
T ss_pred EEECCCCHHHHHHHHHcChHHHhhCCCCHHHHHHHHHHHHHh
Confidence 999998889999999999999999999999998888776653
No 66
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.36 E-value=1.5e-11 Score=131.46 Aligned_cols=117 Identities=32% Similarity=0.484 Sum_probs=107.2
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc---CCCCEE
Q 007940 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLE---MDLPVI 94 (584)
Q Consensus 18 mrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~---~~iPVI 94 (584)
.+||||||++..+..+...|...++.+..+.++.+++..+.... ||+||+|+.||+++|+++++.++.. +.+|||
T Consensus 3 ~~ilii~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~--~dlvi~d~~~~~~~g~~l~~~i~~~~~~~~~~ii 80 (457)
T PRK09581 3 ARILVVDDIPANVKLLEAKLLAEYYTVLTASSGAEAIAICEREQ--PDIILLDVMMPGMDGFEVCRRLKSDPATTHIPVV 80 (457)
T ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHhhcC--CCEEEEeCCCCCCCHHHHHHHHHcCcccCCCCEE
Confidence 48999999999999999999988999999999999999987644 9999999999999999999999753 368999
Q ss_pred EEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 007940 95 MMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 136 (584)
Q Consensus 95 vlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrr 136 (584)
++++..+.....++++.||++|+.||++..+|..++.++++.
T Consensus 81 ~~s~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~ 122 (457)
T PRK09581 81 MVTALDDPEDRVRGLEAGADDFLTKPINDVALFARVKSLTRL 122 (457)
T ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988887654
No 67
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=99.35 E-value=3e-12 Score=126.93 Aligned_cols=109 Identities=13% Similarity=0.145 Sum_probs=91.6
Q ss_pred HHHHHHHHHHh---CCCeEEEECCHHHHHHHHHhcCCCceEEE---EecCCCCCCHHHHHHHHhc-cCCCCEEEEEcCCC
Q 007940 29 WLKILEKMLKK---CSYEVTTCGLARDALSLLRERKDGYDIVI---SDVNMPDMDGFKLLEHVGL-EMDLPVIMMSVDGE 101 (584)
Q Consensus 29 ~r~~L~~lL~~---~gy~V~~a~~~~eAL~~L~~~~~~pDLVI---lDi~MPdmdGlELL~~Ir~-~~~iPVIvlSa~~d 101 (584)
.|..++.+|+. .++.|.++.++.++++.+... .||+|| +|+.||+++|++++++|+. .+.+|||++|+..+
T Consensus 2 ~r~gi~~lL~~~~~~~~~v~~~~~~~~~l~~~~~~--~pd~vl~dl~d~~mp~~~Gl~~~~~l~~~~p~~~iIvlt~~~~ 79 (207)
T PRK11475 2 SSIGIESLFRKFPGNPYKLHTFSSQSSFQDAMSRI--SFSAVIFSLSAMRSERREGLSCLTELAIKFPRMRRLVIADDDI 79 (207)
T ss_pred chHHHHHHHhcCCCCeeEEEEeCCHHHHHHHhccC--CCCEEEeeccccCCCCCCHHHHHHHHHHHCCCCCEEEEeCCCC
Confidence 36788899975 356667899999999988754 489998 6888999999999999964 57899999999877
Q ss_pred hHHHHhhh-hcCCceEEeCCCCHHHHHHHHHHHHHhcch
Q 007940 102 TSRVMKGV-QHGACDYLLKPIRMKELRNIWQHVFRKKIH 139 (584)
Q Consensus 102 ~~~~~~aL-~~GAdDYL~KP~~~~eL~~aI~~vlrrk~~ 139 (584)
......++ ++||.+||.||...++|..+|+.++++...
T Consensus 80 ~~~~~~~~~~~Ga~gyl~K~~~~~eL~~aI~~v~~G~~~ 118 (207)
T PRK11475 80 EARLIGSLSPSPLDGVLSKASTLEILQQELFLSLNGVRQ 118 (207)
T ss_pred HHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHCCCcc
Confidence 76666666 799999999999999999999999877543
No 68
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=99.32 E-value=1.8e-11 Score=122.13 Aligned_cols=117 Identities=11% Similarity=0.105 Sum_probs=95.9
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHH-HHHhc-cCCCCE
Q 007940 16 AGLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLL-EHVGL-EMDLPV 93 (584)
Q Consensus 16 ~gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL-~~Ir~-~~~iPV 93 (584)
...+|++|||++..+..|+.+|+..--.+..+.++.+++..+. .|||||+|+.||+++|++++ +.++. .+.++|
T Consensus 9 ~~~~~~~v~~~~l~~~~l~~~L~~~~~v~~~~~~~~~~~~~~~----~~DvvllDi~~p~~~G~~~~~~~i~~~~p~~~v 84 (216)
T PRK10100 9 HGHTLLLITKPSLQATALLQHLKQSLAITGKLHNIQRSLDDIS----SGSIILLDMMEADKKLIHYWQDTLSRKNNNIKI 84 (216)
T ss_pred cCceEEEEeChHhhhHHHHHHHHHhCCCeEEEcCHHHhhccCC----CCCEEEEECCCCCccHHHHHHHHHHHhCCCCcE
Confidence 3457999999999999999999854334557788888888643 28999999999999999997 45654 468999
Q ss_pred EEEEcCCChHHHHhhhh--cCCceEEeCCCCHHHHHHHHHHHHHhcc
Q 007940 94 IMMSVDGETSRVMKGVQ--HGACDYLLKPIRMKELRNIWQHVFRKKI 138 (584)
Q Consensus 94 IvlSa~~d~~~~~~aL~--~GAdDYL~KP~~~~eL~~aI~~vlrrk~ 138 (584)
|++|+..+ ....++. .||.+|+.|+.+.++|.++|+.+.++..
T Consensus 85 vvlt~~~~--~~~~~~~~~~Ga~G~l~K~~~~~~L~~aI~~v~~G~~ 129 (216)
T PRK10100 85 LLLNTPED--YPYREIENWPHINGVFYAMEDQERVVNGLQGVLRGEC 129 (216)
T ss_pred EEEECCch--hHHHHHHHhcCCeEEEECCCCHHHHHHHHHHHHcCCc
Confidence 99999876 3445565 4999999999999999999999887654
No 69
>PRK15369 two component system sensor kinase SsrB; Provisional
Probab=99.32 E-value=5.3e-11 Score=112.05 Aligned_cols=119 Identities=21% Similarity=0.333 Sum_probs=104.1
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHHhCC-CeEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCC
Q 007940 16 AGLRVLVVDDDLAWLKILEKMLKKCS-YEVT-TCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGL-EMDLP 92 (584)
Q Consensus 16 ~gmrVLIVDDd~~~r~~L~~lL~~~g-y~V~-~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~-~~~iP 92 (584)
+.++||||||++..+..+...|+..+ +.+. .+.++.+++..+.... ||+|++|+.|++++|+++++.++. .+.+|
T Consensus 2 ~~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~ 79 (211)
T PRK15369 2 KNYKILLVDDHELIINGIKNMLAPYPRYKIVGQVDNGLEVYNACRQLE--PDIVILDLGLPGMNGLDVIPQLHQRWPAMN 79 (211)
T ss_pred CccEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHHHCCCCc
Confidence 35799999999999999999998764 6644 7888999998877644 999999999999999999999865 36789
Q ss_pred EEEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 007940 93 VIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 136 (584)
Q Consensus 93 VIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrr 136 (584)
+|+++...+......++..|+.+|+.||+...+|...+..++++
T Consensus 80 ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 123 (211)
T PRK15369 80 ILVLTARQEEHMASRTLAAGALGYVLKKSPQQILLAAIQTVAVG 123 (211)
T ss_pred EEEEeCCCCHHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCC
Confidence 99999999888999999999999999999999999998887654
No 70
>PRK13558 bacterio-opsin activator; Provisional
Probab=99.31 E-value=1.4e-11 Score=140.31 Aligned_cols=118 Identities=19% Similarity=0.183 Sum_probs=103.7
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCCEEE
Q 007940 17 GLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGL-EMDLPVIM 95 (584)
Q Consensus 17 gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~-~~~iPVIv 95 (584)
.++||||||++..+..+..+|...+|.|..+.++.+++..+.... ||+||+|+.||+++|++++++++. .+.+|||+
T Consensus 7 ~~~ILivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~al~~~~~~~--~Dlvl~d~~lp~~~g~~~l~~l~~~~~~~piI~ 84 (665)
T PRK13558 7 TRGVLFVGDDPEAGPVDCDLDEDGRLDVTQIRDFVAARDRVEAGE--IDCVVADHEPDGFDGLALLEAVRQTTAVPPVVV 84 (665)
T ss_pred ceeEEEEccCcchHHHHHHHhhccCcceEeeCCHHHHHHHhhccC--CCEEEEeccCCCCcHHHHHHHHHhcCCCCCEEE
Confidence 479999999999999999999998999999999999999887643 999999999999999999999975 46799999
Q ss_pred EEcCCChHHHHhhhhcCCceEEeCCCCHH--HHHHHHHHHHHh
Q 007940 96 MSVDGETSRVMKGVQHGACDYLLKPIRMK--ELRNIWQHVFRK 136 (584)
Q Consensus 96 lSa~~d~~~~~~aL~~GAdDYL~KP~~~~--eL~~aI~~vlrr 136 (584)
+|+..+.....+++..||.+|+.||.... .+..++++++..
T Consensus 85 lt~~~~~~~~~~al~~Ga~dyl~k~~~~~~~~l~~~i~~~~~~ 127 (665)
T PRK13558 85 VPTAGDEAVARRAVDADAAAYVPAVSDDATAAIAERIESAVPE 127 (665)
T ss_pred EECCCCHHHHHHHHhcCcceEEeccchhHHHHHHHHHHHhhhc
Confidence 99999999999999999999999997643 556666655543
No 71
>PRK10403 transcriptional regulator NarP; Provisional
Probab=99.31 E-value=5.1e-11 Score=113.24 Aligned_cols=118 Identities=25% Similarity=0.363 Sum_probs=103.5
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHh-CCCeEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc-CCCCE
Q 007940 17 GLRVLVVDDDLAWLKILEKMLKK-CSYEVT-TCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLE-MDLPV 93 (584)
Q Consensus 17 gmrVLIVDDd~~~r~~L~~lL~~-~gy~V~-~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~-~~iPV 93 (584)
.++||||||++..+..+...|+. .++.+. .+.++.+++..+... .||+||+|+.||+++|+++++.++.. +..|+
T Consensus 6 ~~~ilii~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlvi~d~~~~~~~~~~~~~~l~~~~~~~~i 83 (215)
T PRK10403 6 PFQVLIVDDHPLMRRGVRQLLELDPGFEVVAEAGDGASAIDLANRL--DPDVILLDLNMKGMSGLDTLNALRRDGVTAQI 83 (215)
T ss_pred eEEEEEEcCCHHHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHhc--CCCEEEEecCCCCCcHHHHHHHHHHhCCCCeE
Confidence 46899999999999999999975 467765 688999999887654 49999999999999999999999654 57899
Q ss_pred EEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 007940 94 IMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 136 (584)
Q Consensus 94 IvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrr 136 (584)
|+++...+......+++.||++|+.||++..+|..++++++.+
T Consensus 84 i~l~~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~~ 126 (215)
T PRK10403 84 IILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRAGAKG 126 (215)
T ss_pred EEEeCCCChHHHHHHHHcCCCeEEecCCCHHHHHHHHHHHhCC
Confidence 9999888888888999999999999999999999999887644
No 72
>PRK10651 transcriptional regulator NarL; Provisional
Probab=99.29 E-value=8e-11 Score=112.22 Aligned_cols=120 Identities=20% Similarity=0.369 Sum_probs=105.1
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHHhC-CCeEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc-CCCC
Q 007940 16 AGLRVLVVDDDLAWLKILEKMLKKC-SYEVT-TCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLE-MDLP 92 (584)
Q Consensus 16 ~gmrVLIVDDd~~~r~~L~~lL~~~-gy~V~-~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~-~~iP 92 (584)
...+||||||++..+..+...|+.. ++.+. .+.++.+++..+.... ||+||+|+.||+++|+++++.++.. +..|
T Consensus 5 ~~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~dlvl~d~~l~~~~~~~~~~~l~~~~~~~~ 82 (216)
T PRK10651 5 EPATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESLD--PDLILLDLNMPGMNGLETLDKLREKSLSGR 82 (216)
T ss_pred cceEEEEECCCHHHHHHHHHHHccCCCcEEEEEeCCHHHHHHHHHhCC--CCEEEEeCCCCCCcHHHHHHHHHHhCCCCc
Confidence 3469999999999999999999865 46544 6889999999887643 9999999999999999999998643 5789
Q ss_pred EEEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHhc
Q 007940 93 VIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 137 (584)
Q Consensus 93 VIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrrk 137 (584)
+|+++...+......+++.|+++|+.||++..+|...+..++++.
T Consensus 83 vi~l~~~~~~~~~~~~~~~g~~~~i~k~~~~~~l~~~i~~~~~~~ 127 (216)
T PRK10651 83 IVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALQQAAAGE 127 (216)
T ss_pred EEEEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCC
Confidence 999999888888999999999999999999999999999887653
No 73
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=99.24 E-value=9.7e-11 Score=115.89 Aligned_cols=117 Identities=10% Similarity=0.019 Sum_probs=96.2
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhCCC---eEEEECCHHHHHHHHHhcCCCceEEEEecC--CCCCCHHHHHHHHhc-cCCC
Q 007940 18 LRVLVVDDDLAWLKILEKMLKKCSY---EVTTCGLARDALSLLRERKDGYDIVISDVN--MPDMDGFKLLEHVGL-EMDL 91 (584)
Q Consensus 18 mrVLIVDDd~~~r~~L~~lL~~~gy---~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~--MPdmdGlELL~~Ir~-~~~i 91 (584)
|.|+||||++.++..++.+|+..++ .|..+.++.+++..+... .||+||+|+. ||+++|.++++.|+. .+.+
T Consensus 1 ~~~lIvDD~~~~~~gl~~~L~~~~~~~~vv~~~~~~~~~~~~~~~~--~pDlvLlDl~~~l~~~~g~~~i~~i~~~~p~~ 78 (207)
T PRK15411 1 MSTIIMDLCSYTRLGLTGYLLSRGVKKREINDIETVDDLAIACDSL--RPSVVFINEDCFIHDASNSQRIKQIINQHPNT 78 (207)
T ss_pred CCEEEEcCCHHHHHHHHHHHHhCCCcceEEEecCCHHHHHHHHhcc--CCCEEEEeCcccCCCCChHHHHHHHHHHCCCC
Confidence 5699999999999999999987653 345788999999988754 3999999966 888899999999964 5679
Q ss_pred CEEEEEcCCChHHHHhhhhcCCce-EEeCCCCHHHHHHHHHHHHHhc
Q 007940 92 PVIMMSVDGETSRVMKGVQHGACD-YLLKPIRMKELRNIWQHVFRKK 137 (584)
Q Consensus 92 PVIvlSa~~d~~~~~~aL~~GAdD-YL~KP~~~~eL~~aI~~vlrrk 137 (584)
+||++|+..+.... .++..|+.. |+.|+.+.++|..+++.+..+.
T Consensus 79 ~iivlt~~~~~~~~-~~~~~~~~~~~~~K~~~~~~L~~aI~~v~~g~ 124 (207)
T PRK15411 79 LFIVFMAIANIHFD-EYLLVRKNLLISSKSIKPESLDDLLGDILKKE 124 (207)
T ss_pred eEEEEECCCchhHH-HHHHHHhhceeeeccCCHHHHHHHHHHHHcCC
Confidence 99999998776554 355556654 8899999999999999887553
No 74
>PRK09191 two-component response regulator; Provisional
Probab=99.24 E-value=1.8e-10 Score=115.22 Aligned_cols=116 Identities=18% Similarity=0.308 Sum_probs=98.6
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEecCCCC-CCHHHHHHHHhccCCCCEE
Q 007940 17 GLRVLVVDDDLAWLKILEKMLKKCSYEVT-TCGLARDALSLLRERKDGYDIVISDVNMPD-MDGFKLLEHVGLEMDLPVI 94 (584)
Q Consensus 17 gmrVLIVDDd~~~r~~L~~lL~~~gy~V~-~a~~~~eAL~~L~~~~~~pDLVIlDi~MPd-mdGlELL~~Ir~~~~iPVI 94 (584)
..+||||||++..+..++..|+..|+.+. .+.++.+++..+... .||+||+|+.||+ ++|+++++.++....+|||
T Consensus 137 ~~~~liidd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~l~~l~~~--~~dlvi~d~~~~~~~~g~e~l~~l~~~~~~pii 214 (261)
T PRK09191 137 ATRVLIIEDEPIIAMDLEQLVESLGHRVTGIARTRAEAVALAKKT--RPGLILADIQLADGSSGIDAVNDILKTFDVPVI 214 (261)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHhcc--CCCEEEEecCCCCCCCHHHHHHHHHHhCCCCEE
Confidence 45899999999999999999998898887 688999999988764 4999999999995 8999999998654489999
Q ss_pred EEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 007940 95 MMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 136 (584)
Q Consensus 95 vlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrr 136 (584)
++|+..+... .+...|+.+|+.||++.++|...++++...
T Consensus 215 ~ls~~~~~~~--~~~~~~~~~~l~kP~~~~~l~~~i~~~~~~ 254 (261)
T PRK09191 215 FITAFPERLL--TGERPEPAFLITKPFQPDTVKAAISQALFF 254 (261)
T ss_pred EEeCCCcHHH--HHHhcccCceEECCCCHHHHHHHHHHHHhc
Confidence 9998766543 344567889999999999999999887643
No 75
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=99.23 E-value=7.5e-11 Score=114.63 Aligned_cols=120 Identities=21% Similarity=0.305 Sum_probs=102.9
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCCEE
Q 007940 16 AGLRVLVVDDDLAWLKILEKMLKKCSYEVT-TCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVI 94 (584)
Q Consensus 16 ~gmrVLIVDDd~~~r~~L~~lL~~~gy~V~-~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVI 94 (584)
..+|||++||++..+..+...|...||.++ ++.++.++...+.... ||+||+|+.||..|-.+-+.........|||
T Consensus 4 ~~lrvlv~~d~~i~~~~i~~~l~eag~~~Vg~~~~~~~~~~~~~~~~--pDvVildie~p~rd~~e~~~~~~~~~~~piv 81 (194)
T COG3707 4 MLLRVLVADDEALTRMDIREGLLEAGYQRVGEAADGLEAVEVCERLQ--PDVVILDIEMPRRDIIEALLLASENVARPIV 81 (194)
T ss_pred cccceeeccccccchhhHHHHHHHcCCeEeeeecccccchhHHHhcC--CCEEEEecCCCCccHHHHHHHhhcCCCCCEE
Confidence 467999999999999999999999999765 7777888888887755 9999999999999954444444455788999
Q ss_pred EEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHhc
Q 007940 95 MMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 137 (584)
Q Consensus 95 vlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrrk 137 (584)
++|++.+...+..+++.||.+||+||+....|+-++.-+..+.
T Consensus 82 ~lt~~s~p~~i~~a~~~Gv~ayivkpi~~~rl~p~L~vA~srf 124 (194)
T COG3707 82 ALTAYSDPALIEAAIEAGVMAYIVKPLDESRLLPILDVAVSRF 124 (194)
T ss_pred EEEccCChHHHHHHHHcCCeEEEecCcchhhhhHHHHHHHHHH
Confidence 9999999999999999999999999999999998877665543
No 76
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=99.18 E-value=3.2e-10 Score=132.99 Aligned_cols=118 Identities=19% Similarity=0.224 Sum_probs=106.9
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCCEE
Q 007940 16 AGLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGL-EMDLPVI 94 (584)
Q Consensus 16 ~gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~-~~~iPVI 94 (584)
.+.+||||||++..+..+...|+..||+|..+.++.++++.+......||+||+ .||+++|+++++.++. .+.+|||
T Consensus 696 ~~~~ILvVddd~~~~~~l~~~L~~~G~~v~~~~s~~~al~~l~~~~~~~DlVll--~~~~~~g~~l~~~l~~~~~~ipII 773 (828)
T PRK13837 696 RGETVLLVEPDDATLERYEEKLAALGYEPVGFSTLAAAIAWISKGPERFDLVLV--DDRLLDEEQAAAALHAAAPTLPII 773 (828)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCceEEEE--CCCCCCHHHHHHHHHhhCCCCCEE
Confidence 467999999999999999999999999999999999999998764445899999 7999999999999964 4688999
Q ss_pred EEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 007940 95 MMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 136 (584)
Q Consensus 95 vlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrr 136 (584)
+++.........+++..| ++||.||++..+|..+++++++.
T Consensus 774 vls~~~~~~~~~~~~~~G-~d~L~KP~~~~~L~~~l~~~l~~ 814 (828)
T PRK13837 774 LGGNSKTMALSPDLLASV-AEILAKPISSRTLAYALRTALAT 814 (828)
T ss_pred EEeCCCchhhhhhHhhcc-CcEEeCCCCHHHHHHHHHHHHcc
Confidence 999998888899999999 99999999999999999988754
No 77
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers
Probab=99.15 E-value=6.6e-10 Score=90.19 Aligned_cols=111 Identities=34% Similarity=0.594 Sum_probs=98.1
Q ss_pred EEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCCEEEEEcC
Q 007940 21 LVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGL-EMDLPVIMMSVD 99 (584)
Q Consensus 21 LIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~-~~~iPVIvlSa~ 99 (584)
+++++++..+..+...++..|+.+..+.+..+++..+... .+|++++|..+++.+|+++++.++. .+.+|+|+++..
T Consensus 1 l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~ii~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~ 78 (113)
T cd00156 1 LIVDDDPLIRELLRRLLEKEGYEVVEAEDGEEALALLAEE--KPDLILLDIMMPGMDGLELLRRIRKRGPDIPIIFLTAH 78 (113)
T ss_pred CeecCcHHHHHHHHHHHhhcCceEEEecCHHHHHHHHHhC--CCCEEEEecCCCCCchHHHHHHHHHhCCCCCEEEEEec
Confidence 5789999999999999999899998888999999988764 4999999999999999999999865 367899999887
Q ss_pred CChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHH
Q 007940 100 GETSRVMKGVQHGACDYLLKPIRMKELRNIWQHV 133 (584)
Q Consensus 100 ~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~v 133 (584)
.......++++.|+.+|+.||+...+|...++++
T Consensus 79 ~~~~~~~~~~~~~~~~~i~~p~~~~~l~~~l~~~ 112 (113)
T cd00156 79 GDDEDAVEALKAGADDYLTKPFSPEELLARIRAL 112 (113)
T ss_pred ccHHHHHHHHHcChhhHccCCCCHHHHHHHHHhh
Confidence 7778888999999999999999999988877653
No 78
>PRK13557 histidine kinase; Provisional
Probab=99.09 E-value=1.4e-09 Score=118.77 Aligned_cols=120 Identities=23% Similarity=0.319 Sum_probs=106.9
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCC-CCHHHHHHHHhc-cCCCCE
Q 007940 16 AGLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPD-MDGFKLLEHVGL-EMDLPV 93 (584)
Q Consensus 16 ~gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPd-mdGlELL~~Ir~-~~~iPV 93 (584)
.+.+||||+|++..+..+..+|+..||.+..+.++.+++..+... ..||+||+|..||+ ++|+++++.++. .+.+|+
T Consensus 414 ~~~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~-~~~d~vi~d~~~~~~~~~~~~~~~l~~~~~~~~i 492 (540)
T PRK13557 414 GTETILIVDDRPDVAELARMILEDFGYRTLVASNGREALEILDSH-PEVDLLFTDLIMPGGMNGVMLAREARRRQPKIKV 492 (540)
T ss_pred CCceEEEEcCcHHHHHHHHHHHHhcCCeEEEeCCHHHHHHHHhcC-CCceEEEEeccCCCCCCHHHHHHHHHHhCCCCcE
Confidence 457999999999999999999999999999999999999988642 24999999999997 999999999975 367899
Q ss_pred EEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 007940 94 IMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 136 (584)
Q Consensus 94 IvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrr 136 (584)
|+++...+......++..|+.+|+.||+..++|..++++++..
T Consensus 493 i~~~~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~ 535 (540)
T PRK13557 493 LLTTGYAEASIERTDAGGSEFDILNKPYRRAELARRVRMVLDG 535 (540)
T ss_pred EEEcCCCchhhhhhhccccCCceeeCCCCHHHHHHHHHHHhcC
Confidence 9999988888888899999999999999999999998877653
No 79
>PRK10693 response regulator of RpoS; Provisional
Probab=99.06 E-value=9.6e-10 Score=114.72 Aligned_cols=90 Identities=29% Similarity=0.477 Sum_probs=79.4
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc-CCCCEEEEEcCCChHHHHhhhhcCCceEEeCCC-CH
Q 007940 46 TCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLE-MDLPVIMMSVDGETSRVMKGVQHGACDYLLKPI-RM 123 (584)
Q Consensus 46 ~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~-~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~KP~-~~ 123 (584)
.+.++.+|++.+... .||+||+|+.||+|+|+++++.++.. ..+|||++|+..+.+.+.++++.||+|||.||+ ..
T Consensus 2 ~a~~g~~al~~l~~~--~pDlVL~D~~mp~~~Gle~~~~ir~~~~~ipiI~lt~~~~~~~~~~al~~Ga~dyl~KP~~~~ 79 (303)
T PRK10693 2 LAANGVDALELLGGF--TPDLIICDLAMPRMNGIEFVEHLRNRGDQTPVLVISATENMADIAKALRLGVQDVLLKPVKDL 79 (303)
T ss_pred EeCCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEEEECCCCHHHHHHHHHCCCcEEEECCCCcH
Confidence 467889999988764 49999999999999999999999754 679999999999999999999999999999999 48
Q ss_pred HHHHHHHHHHHHhc
Q 007940 124 KELRNIWQHVFRKK 137 (584)
Q Consensus 124 ~eL~~aI~~vlrrk 137 (584)
++|..+++++++..
T Consensus 80 ~~L~~~i~~~l~~~ 93 (303)
T PRK10693 80 NRLREMVFACLYPS 93 (303)
T ss_pred HHHHHHHHHHhhhh
Confidence 99999888877543
No 80
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=99.00 E-value=5.6e-10 Score=88.99 Aligned_cols=54 Identities=61% Similarity=0.944 Sum_probs=50.9
Q ss_pred ccccccchhHHHHHHHHHHHhcc-cccCHHHHHhhhCCCCCchHHHHhhhHHHHH
Q 007940 200 KARVVWSIDLHQKFVKAVNQIGF-DKVGPKKILDLMNVPWLTRENVASHLQKYRL 253 (584)
Q Consensus 200 K~rvvws~eLhqkFv~av~~iG~-s~~~Pk~Il~~m~v~~Lt~~~V~sHlqkyr~ 253 (584)
|+|+.|+.++|.+|++|+..+|. +.++|+.|+++|.+..+|..+|++|+|||+.
T Consensus 1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~ 55 (57)
T TIGR01557 1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRL 55 (57)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 46889999999999999999997 8999999999999999999999999999985
No 81
>COG3279 LytT Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]
Probab=98.94 E-value=4.6e-09 Score=106.79 Aligned_cols=115 Identities=27% Similarity=0.433 Sum_probs=96.8
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhCC-CeE-EEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc-CCCCEE
Q 007940 18 LRVLVVDDDLAWLKILEKMLKKCS-YEV-TTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLE-MDLPVI 94 (584)
Q Consensus 18 mrVLIVDDd~~~r~~L~~lL~~~g-y~V-~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~-~~iPVI 94 (584)
++|+++||++..++.|..++.... +++ ..+.++.++++.++.. .+|++++||.||+|+|+++.+.++.. +..+|+
T Consensus 2 ~~i~i~dd~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~fldI~~~~~~G~ela~~i~~~~~~~~Iv 79 (244)
T COG3279 2 LKVLIVDDEPLAREELRRILNEIPDIEIVGEAENGEEALQLLQGL--RPDLVFLDIAMPDINGIELAARIRKGDPRPAIV 79 (244)
T ss_pred CcEEEecCCHHHHHHHHHHHHhhhhcCeeeeeccchhhHHHHhcc--CCCeEEEeeccCccchHHHHHHhcccCCCCeEE
Confidence 689999999999999999998432 332 3688889999999876 49999999999999999999999764 456677
Q ss_pred EEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 007940 95 MMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 136 (584)
Q Consensus 95 vlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrr 136 (584)
++|++. +.+..+++..|.|||.||+..++|...+.+..+.
T Consensus 80 fvt~~~--~~a~~afev~a~d~i~kp~~~~~l~~~l~~~~~~ 119 (244)
T COG3279 80 FVTAHD--EYAVAAFEVEALDYLLKPISEERLAKTLERLRRY 119 (244)
T ss_pred EEEehH--HHHHHHHhHHHHhhhcCcchHHHHHHHHHHHHHH
Confidence 788764 5667888999999999999999999999876553
No 82
>PRK15029 arginine decarboxylase; Provisional
Probab=98.94 E-value=6.1e-09 Score=120.46 Aligned_cols=107 Identities=13% Similarity=0.219 Sum_probs=87.6
Q ss_pred CEEEEEeCCHH--------HHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHH----HHHHHH
Q 007940 18 LRVLVVDDDLA--------WLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGF----KLLEHV 85 (584)
Q Consensus 18 mrVLIVDDd~~--------~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGl----ELL~~I 85 (584)
||||||||+.. .++.|+..|+..||+|..+.++.+|+..+... ..||+||+|++||+++|+ ++|++|
T Consensus 1 MkILIVDDD~~~~~~~~~~i~~~L~~~Le~~G~eV~~a~s~~dAl~~l~~~-~~~DlVLLD~~LPd~dG~~~~~ell~~I 79 (755)
T PRK15029 1 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSN-EAIDCLMFSYQMEHPDEHQNVRQLIGKL 79 (755)
T ss_pred CeEEEEeCCcccccchhHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhc-CCCcEEEEECCCCCCccchhHHHHHHHH
Confidence 58999999995 69999999999999999999999999999762 249999999999999997 899999
Q ss_pred hcc-CCCCEEEEEcCCC--hHHHHhhhhcCCceEEeCCCCHHHH
Q 007940 86 GLE-MDLPVIMMSVDGE--TSRVMKGVQHGACDYLLKPIRMKEL 126 (584)
Q Consensus 86 r~~-~~iPVIvlSa~~d--~~~~~~aL~~GAdDYL~KP~~~~eL 126 (584)
+.. ..+|||++|+..+ .......++ -+..|+-+-....++
T Consensus 80 R~~~~~iPIIlLTar~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 122 (755)
T PRK15029 80 HERQQNVPVFLLGDREKALAAMDRDLLE-LVDEFAWILEDTADF 122 (755)
T ss_pred HhhCCCCCEEEEEcCCcccccCCHHHHH-hhheEEEecCCCHHH
Confidence 754 5899999999886 333333333 267788886665554
No 83
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=98.19 E-value=1.6e-05 Score=93.65 Aligned_cols=114 Identities=23% Similarity=0.183 Sum_probs=94.4
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHH-hc--cCCC
Q 007940 15 PAGLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHV-GL--EMDL 91 (584)
Q Consensus 15 p~gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~I-r~--~~~i 91 (584)
..+.+|+|+||++..+..+..+|+..|+.|..+.+..+ +.. ..||++++|+.||++++...+... +. ....
T Consensus 534 ~~g~~ili~d~~~~~~~~l~~~L~~~g~~v~~~~~~~~----l~~--~~~d~il~~~~~~~~~~~~~~~~~~~~~~~~~~ 607 (919)
T PRK11107 534 LAGKRLLYVEPNSAAAQATLDILSETPLEVTYSPTLSQ----LPE--AHYDILLLGLPVTFREPLTMLHERLAKAKSMTD 607 (919)
T ss_pred cCCCeEEEEeCCHHHHHHHHHHHHHCCCEEEEcCCHHH----hcc--CCCCEEEecccCCCCCCHHHHHHHHHhhhhcCC
Confidence 46789999999999999999999999999998887776 333 349999999999998877665543 32 2345
Q ss_pred CEEEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHH
Q 007940 92 PVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVF 134 (584)
Q Consensus 92 PVIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vl 134 (584)
++|+++...+......+.+.|+++|+.||+...+|..++....
T Consensus 608 ~~i~~~~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~ 650 (919)
T PRK11107 608 FLILALPCHEQVLAEQLKQDGADACLSKPLSHTRLLPALLEPC 650 (919)
T ss_pred cEEEEeCCcchhhHHHHhhCCCceEECCCCCHHHHHHHHHHhh
Confidence 6888888888888889999999999999999999988877544
No 84
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=98.06 E-value=4.4e-06 Score=91.32 Aligned_cols=92 Identities=32% Similarity=0.426 Sum_probs=80.3
Q ss_pred CeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCCEEEEEcCCChHHHHhhhhcCCceEEeCCC
Q 007940 42 YEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPI 121 (584)
Q Consensus 42 y~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~KP~ 121 (584)
++|.++..+..|+..+.... +|.+++|++||+|+|+++++.++..+.. ++++|...+.....+++++||++|+.||+
T Consensus 13 ~~v~~a~~g~~~l~~~~~~~--~~~~lld~~m~~~~~~~~~~~lk~~~~~-~v~~t~~~~~~~~~~~~~~~~~~~l~~~~ 89 (435)
T COG3706 13 KEVATAKKGLIALAILLDHK--PDYKLLDVMMPGMDGFELCRRLKAEPAT-VVMVTALDDSAPRVRGLKAGADDFLTKPV 89 (435)
T ss_pred hhhhhccchHHHHHHHhcCC--CCeEEeecccCCcCchhHHHHHhcCCcc-eEEEEecCCCCcchhHHhhhhhhhccCCC
Confidence 56777888999999888754 9999999999999999999999876655 89999998888899999999999999999
Q ss_pred CHHHHHHHHHHHHHh
Q 007940 122 RMKELRNIWQHVFRK 136 (584)
Q Consensus 122 ~~~eL~~aI~~vlrr 136 (584)
....+......+.+.
T Consensus 90 ~~~~~~~r~~~l~~~ 104 (435)
T COG3706 90 NDSQLFLRAKSLVRL 104 (435)
T ss_pred ChHHHHHhhhhhccc
Confidence 999888777766554
No 85
>smart00448 REC cheY-homologous receiver domain. CheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues.
Probab=97.39 E-value=0.0013 Score=45.94 Aligned_cols=55 Identities=38% Similarity=0.640 Sum_probs=48.0
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCC
Q 007940 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMP 74 (584)
Q Consensus 18 mrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MP 74 (584)
++|+++++++..+..+...++..|+.+..+.+..+++..+... .+|++++|+.++
T Consensus 1 ~~i~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~vi~~~~~~ 55 (55)
T smart00448 1 MRILVVDDDPLLRELLKALLEREGYEVDEATDGEEALELLKEE--KPDLILLDIMMP 55 (55)
T ss_pred CeEEEEcCCHHHHHHHHHHHhhcCcEEEEeCCHHHHHHHHHhc--CCCEEEEeccCC
Confidence 4799999999999999999999999988888999998888654 389999998654
No 86
>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO).
Probab=97.38 E-value=0.0016 Score=58.48 Aligned_cols=105 Identities=13% Similarity=0.200 Sum_probs=73.3
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEec-CCCCCCHHHHHHHH-hccCCCCEEEE
Q 007940 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDV-NMPDMDGFKLLEHV-GLEMDLPVIMM 96 (584)
Q Consensus 19 rVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi-~MPdmdGlELL~~I-r~~~~iPVIvl 96 (584)
|||||||+...|..|+.+|+=.|+++..+..... ........ .+.+++-. ... ...++++.+ +..+++||+++
T Consensus 1 kILvIddd~~R~~~L~~ILeFlGe~~~~~~~~~~-~~~~~~~~--~~~~~v~~g~~~--~~~~~l~~l~~~~~~~Pvlll 75 (109)
T PF06490_consen 1 KILVIDDDAERRQRLSTILEFLGEQCEAVSSSDW-SQADWSSP--WEACAVILGSCS--KLAELLKELLKWAPHIPVLLL 75 (109)
T ss_pred CEEEECCcHHHHHhhhhhhhhcCCCeEEecHHHH-HHhhhhcC--CcEEEEEecCch--hHHHHHHHHHhhCCCCCEEEE
Confidence 7999999999999999999999988887765433 23333222 34444333 333 445667776 45689999999
Q ss_pred EcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHH
Q 007940 97 SVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHV 133 (584)
Q Consensus 97 Sa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~v 133 (584)
......... ..+.+-|..|++..+|..+++++
T Consensus 76 g~~~~~~~~-----~nvvg~Le~Pl~Y~qLt~~L~~c 107 (109)
T PF06490_consen 76 GEHDSPEEL-----PNVVGELEEPLNYPQLTDALHRC 107 (109)
T ss_pred CCCCccccc-----cCeeEecCCCCCHHHHHHHHHHh
Confidence 876554111 11566789999999999988875
No 87
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=95.94 E-value=0.21 Score=45.48 Aligned_cols=110 Identities=12% Similarity=0.051 Sum_probs=77.6
Q ss_pred EEEEE----eCCHHHHHHHHHHHHhCCCeEEEEC---CHHHHHHHHHhcCCCceEEEEecCCCCCC--HHHHHHHHhcc-
Q 007940 19 RVLVV----DDDLAWLKILEKMLKKCSYEVTTCG---LARDALSLLRERKDGYDIVISDVNMPDMD--GFKLLEHVGLE- 88 (584)
Q Consensus 19 rVLIV----DDd~~~r~~L~~lL~~~gy~V~~a~---~~~eAL~~L~~~~~~pDLVIlDi~MPdmd--GlELL~~Ir~~- 88 (584)
||++. |.|..=...+..+|+..||+|...+ ..++.++.+.+.+ +|+|.+-..++..- --++++.+++.
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~~~~a~~~~--~d~V~iS~~~~~~~~~~~~~~~~L~~~~ 78 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQTPEEIVEAAIQED--VDVIGLSSLSGGHMTLFPEVIELLRELG 78 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEcccchhhHHHHHHHHHHHHhcC
Confidence 45555 6677777888999999999998544 3577777777654 99999988775422 23455666554
Q ss_pred CCCCEEEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHH
Q 007940 89 MDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIW 130 (584)
Q Consensus 89 ~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI 130 (584)
+....|++.+....+...++.++|++.|+..--..++....+
T Consensus 79 ~~~i~i~~GG~~~~~~~~~~~~~G~d~~~~~~~~~~~~~~~~ 120 (122)
T cd02071 79 AGDILVVGGGIIPPEDYELLKEMGVAEIFGPGTSIEEIIDKI 120 (122)
T ss_pred CCCCEEEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHH
Confidence 334456666655566677788999999998877777765543
No 88
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=95.62 E-value=0.38 Score=45.02 Aligned_cols=116 Identities=16% Similarity=0.065 Sum_probs=83.7
Q ss_pred CCCEEEEE----eCCHHHHHHHHHHHHhCCCeEEEEC---CHHHHHHHHHhcCCCceEEEEecCCCCC--CHHHHHHHHh
Q 007940 16 AGLRVLVV----DDDLAWLKILEKMLKKCSYEVTTCG---LARDALSLLRERKDGYDIVISDVNMPDM--DGFKLLEHVG 86 (584)
Q Consensus 16 ~gmrVLIV----DDd~~~r~~L~~lL~~~gy~V~~a~---~~~eAL~~L~~~~~~pDLVIlDi~MPdm--dGlELL~~Ir 86 (584)
++.+||+. |.|..=...+..+|+..||+|+..+ ..++.++.+.+.. +|+|.+-..|... ...++++.++
T Consensus 2 ~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~~~~--~d~V~lS~~~~~~~~~~~~~~~~L~ 79 (137)
T PRK02261 2 KKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAIETD--ADAILVSSLYGHGEIDCRGLREKCI 79 (137)
T ss_pred CCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEcCccccCHHHHHHHHHHHH
Confidence 46688888 8888888999999999999998554 3567777776644 9999999887743 2345666665
Q ss_pred cc-C-CCCEEEEEcCC------ChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHH
Q 007940 87 LE-M-DLPVIMMSVDG------ETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVF 134 (584)
Q Consensus 87 ~~-~-~iPVIvlSa~~------d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vl 134 (584)
.. . ++ .|++.+.. ..+...++.++|++.++...-..+++...+++.+
T Consensus 80 ~~~~~~~-~i~vGG~~~~~~~~~~~~~~~l~~~G~~~vf~~~~~~~~i~~~l~~~~ 134 (137)
T PRK02261 80 EAGLGDI-LLYVGGNLVVGKHDFEEVEKKFKEMGFDRVFPPGTDPEEAIDDLKKDL 134 (137)
T ss_pred hcCCCCC-eEEEECCCCCCccChHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHHh
Confidence 44 3 44 44454432 2344567888999889988888888887776654
No 89
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=95.27 E-value=0.19 Score=45.08 Aligned_cols=94 Identities=13% Similarity=0.025 Sum_probs=64.7
Q ss_pred eCCHHHHHHHHHHHHhCCCeEEEEC---CHHHHHHHHHhcCCCceEEEEecCCCCC--CHHHHHHHHhccCC-CCEEEEE
Q 007940 24 DDDLAWLKILEKMLKKCSYEVTTCG---LARDALSLLRERKDGYDIVISDVNMPDM--DGFKLLEHVGLEMD-LPVIMMS 97 (584)
Q Consensus 24 DDd~~~r~~L~~lL~~~gy~V~~a~---~~~eAL~~L~~~~~~pDLVIlDi~MPdm--dGlELL~~Ir~~~~-iPVIvlS 97 (584)
|.+..=...+..+|+..||+|...+ ..++.++.+.+.+ ||+|.+-..+... ...++++.++.... -..|++.
T Consensus 10 e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l~~~~~~~~--pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~vG 87 (119)
T cd02067 10 DGHDIGKNIVARALRDAGFEVIDLGVDVPPEEIVEAAKEED--ADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVLVG 87 (119)
T ss_pred chhhHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEeccccccHHHHHHHHHHHHHcCCCCCeEEEE
Confidence 6677777889999999999997533 3567777777654 9999998876542 34566777765533 3456666
Q ss_pred cCCChHHHHhhhhcCCceEEeC
Q 007940 98 VDGETSRVMKGVQHGACDYLLK 119 (584)
Q Consensus 98 a~~d~~~~~~aL~~GAdDYL~K 119 (584)
+..-......+...|++.|+..
T Consensus 88 G~~~~~~~~~~~~~G~D~~~~~ 109 (119)
T cd02067 88 GAIVTRDFKFLKEIGVDAYFGP 109 (119)
T ss_pred CCCCChhHHHHHHcCCeEEECC
Confidence 6554444456788898766653
No 90
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=95.13 E-value=0.024 Score=67.99 Aligned_cols=51 Identities=24% Similarity=0.219 Sum_probs=43.1
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCC
Q 007940 15 PAGLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNM 73 (584)
Q Consensus 15 p~gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~M 73 (584)
..+.+||||||++..++.+..+|+..|++|.++.++ +.. ..||+||+|+.+
T Consensus 687 l~g~~vLlvdD~~~~r~~l~~~L~~~G~~v~~a~~~------~~~--~~~Dlvl~D~~~ 737 (894)
T PRK10618 687 LDGVTVLLDITSEEVRKIVTRQLENWGATCITPDER------LIS--QEYDIFLTDNPS 737 (894)
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEcCcc------ccC--CCCCEEEECCCC
Confidence 467899999999999999999999999999988653 112 349999999984
No 91
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=95.03 E-value=0.22 Score=45.06 Aligned_cols=104 Identities=14% Similarity=0.165 Sum_probs=72.7
Q ss_pred HHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCC--CCHHHHHHHHhc-cCCCCEEEEEcCCChHHH
Q 007940 29 WLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPD--MDGFKLLEHVGL-EMDLPVIMMSVDGETSRV 105 (584)
Q Consensus 29 ~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPd--mdGlELL~~Ir~-~~~iPVIvlSa~~d~~~~ 105 (584)
..+.|...|++.|++|+.+.+..+|+..++.. ..++.|++++. ++ ....++++.++. ...+||.+++.....+.+
T Consensus 5 ~~~~l~~~L~~~~~~vv~~~~~dd~~~~i~~~-~~i~avvi~~d-~~~~~~~~~ll~~i~~~~~~iPVFl~~~~~~~~~l 82 (115)
T PF03709_consen 5 ASRELAEALEQRGREVVDADSTDDALAIIESF-TDIAAVVISWD-GEEEDEAQELLDKIRERNFGIPVFLLAERDTTEDL 82 (115)
T ss_dssp HHHHHHHHHHHTTTEEEEESSHHHHHHHHHCT-TTEEEEEEECH-HHHHHHHHHHHHHHHHHSTT-EEEEEESCCHHHCC
T ss_pred HHHHHHHHHHHCCCEEEEeCChHHHHHHHHhC-CCeeEEEEEcc-cccchhHHHHHHHHHHhCCCCCEEEEecCCCcccC
Confidence 34567788888899999999999999999875 35899999986 11 134567888864 479999999886544444
Q ss_pred HhhhhcCCceEEeCCCCHHHHH-HHHHHHH
Q 007940 106 MKGVQHGACDYLLKPIRMKELR-NIWQHVF 134 (584)
Q Consensus 106 ~~aL~~GAdDYL~KP~~~~eL~-~aI~~vl 134 (584)
-..+-..+++|+-..-...++. ..|.++.
T Consensus 83 ~~~~l~~v~~~i~l~~~t~~fia~rI~~Aa 112 (115)
T PF03709_consen 83 PAEVLGEVDGFIWLFEDTAEFIARRIEAAA 112 (115)
T ss_dssp CHHHHCCESEEEETTTTTHHHHHHHHHHHH
T ss_pred CHHHHhhccEEEEecCCCHHHHHHHHHHHH
Confidence 3344445778888876655543 4455443
No 92
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=94.19 E-value=1.1 Score=41.74 Aligned_cols=110 Identities=8% Similarity=-0.033 Sum_probs=75.0
Q ss_pred eCCHHHHHHHHHHHHhCCCeEEE---ECCHHHHHHHHHhcCCCceEEEEecCCCC-CCH-HHHHHHHhcc-CCCCEEEEE
Q 007940 24 DDDLAWLKILEKMLKKCSYEVTT---CGLARDALSLLRERKDGYDIVISDVNMPD-MDG-FKLLEHVGLE-MDLPVIMMS 97 (584)
Q Consensus 24 DDd~~~r~~L~~lL~~~gy~V~~---a~~~~eAL~~L~~~~~~pDLVIlDi~MPd-mdG-lELL~~Ir~~-~~iPVIvlS 97 (584)
|-|-.-...+..+|+..||+|+- ..+.++.++.+.+.. +|+|.+...+.. +.. -++++.+++. .....|++-
T Consensus 13 D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~e~~--adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivG 90 (132)
T TIGR00640 13 DGHDRGAKVIATAYADLGFDVDVGPLFQTPEEIARQAVEAD--VHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVG 90 (132)
T ss_pred CccHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcC--CCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 45566667889999999999984 335778888777654 899999876642 222 2344555543 223345555
Q ss_pred cCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHH
Q 007940 98 VDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFR 135 (584)
Q Consensus 98 a~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlr 135 (584)
+....+...+..++|+++|+..--+..+....+.+.+.
T Consensus 91 G~~~~~~~~~l~~~Gvd~~~~~gt~~~~i~~~l~~~~~ 128 (132)
T TIGR00640 91 GVIPPQDFDELKEMGVAEIFGPGTPIPESAIFLLKKLR 128 (132)
T ss_pred CCCChHhHHHHHHCCCCEEECCCCCHHHHHHHHHHHHH
Confidence 44444556778899999999988888888877776543
No 93
>COG4999 Uncharacterized domain of BarA-like signal transduction histidine kinases [Signal transduction mechanisms]
Probab=92.65 E-value=0.3 Score=44.86 Aligned_cols=109 Identities=21% Similarity=0.207 Sum_probs=74.6
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHH-H-hcc-CCC
Q 007940 15 PAGLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEH-V-GLE-MDL 91 (584)
Q Consensus 15 p~gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~-I-r~~-~~i 91 (584)
-+|-|.+.||-+........++|...+.+|+-- .++..+-.. .||++|+.+-.+-.+-+.+.+. + +.- ..-
T Consensus 9 L~gk~LayiEpNstAA~~t~~iL~~tpleVtyr----~t~~~lp~~--hYD~~Ll~vavtfr~n~tm~~~~l~~Al~mtd 82 (140)
T COG4999 9 LAGKRLAYIEPNSTAAQCTLDILSETPLEVTYR----PTFSALPPA--HYDMMLLGVAVTFRENLTMQHERLAKALSMTD 82 (140)
T ss_pred hccceeEEecCccHHHHHHHHHHhcCCceEEec----ccccccChh--hhceeeecccccccCCchHHHHHHHHHHhhhc
Confidence 367899999999999999999999999888743 233444332 3999999997765554443322 1 211 111
Q ss_pred CEEEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHH
Q 007940 92 PVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNI 129 (584)
Q Consensus 92 PVIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~a 129 (584)
-||+--.......+.+..+.||.++|.||++..+|.-.
T Consensus 83 ~vilalPs~~qv~AeqLkQ~g~~~CllKPls~~rLlpt 120 (140)
T COG4999 83 FVILALPSHAQVNAEQLKQDGAGACLLKPLSSTRLLPT 120 (140)
T ss_pred ceEEecCcHHHHhHHHHhhcchHhHhhCcchhhhhHHH
Confidence 23333333344456677889999999999999988763
No 94
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=92.46 E-value=0.43 Score=50.32 Aligned_cols=85 Identities=14% Similarity=0.067 Sum_probs=55.0
Q ss_pred CCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCCEEEEEc-CCChHHHHhhhhcCCceEEeC
Q 007940 41 SYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSV-DGETSRVMKGVQHGACDYLLK 119 (584)
Q Consensus 41 gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVIvlSa-~~d~~~~~~aL~~GAdDYL~K 119 (584)
|.++..+.+..++-.... .-.+|++|..+ ...+-.........||++.. ..+......+++.||.|||.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~-----~~~~~~~~~p~~~~vv~v~~~~~~~~~~~~a~~~Ga~~~l~~ 71 (322)
T TIGR03815 1 GVELDVAPDPEAARRAWA----RAPLVLVDADM-----AEACAAAGLPRRRRVVLVGGGEPGGALWRAAAAVGAEHVAVL 71 (322)
T ss_pred CCceEEccCchhhhhccc----cCCeEEECchh-----hhHHHhccCCCCCCEEEEeCCCCCHHHHHHHHHhChhheeeC
Confidence 345566666555433332 25689998743 22221111112334665554 567889999999999999999
Q ss_pred CCCHHHHHHHHHHHH
Q 007940 120 PIRMKELRNIWQHVF 134 (584)
Q Consensus 120 P~~~~eL~~aI~~vl 134 (584)
|+...+|..++.++.
T Consensus 72 P~~~~~l~~~l~~~~ 86 (322)
T TIGR03815 72 PEAEGWLVELLADLD 86 (322)
T ss_pred CCCHHHHHHHHHhhc
Confidence 999999999887763
No 95
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=91.24 E-value=1.8 Score=50.93 Aligned_cols=79 Identities=15% Similarity=0.125 Sum_probs=59.7
Q ss_pred CEEEEEeCCH------HHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCC
Q 007940 18 LRVLVVDDDL------AWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGL-EMD 90 (584)
Q Consensus 18 mrVLIVDDd~------~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~-~~~ 90 (584)
|+|+||+++. ...+.|.+.|++.||+|..+.+..+++..++.. ...+.|++++.-. ..++++.++. ...
T Consensus 1 ~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 76 (713)
T PRK15399 1 MNIIAIMGPHGVFYKDEPIKELESALQAQGFQTIWPQNSVDLLKFIEHN-PRICGVIFDWDEY---SLDLCSDINQLNEY 76 (713)
T ss_pred CcEEEEecccccccccHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhcc-cceeEEEEecccc---hHHHHHHHHHhCCC
Confidence 5788898774 124667778888999999999999999988853 4589999995332 3557777754 469
Q ss_pred CCEEEEEcCC
Q 007940 91 LPVIMMSVDG 100 (584)
Q Consensus 91 iPVIvlSa~~ 100 (584)
+||+++....
T Consensus 77 ~Pv~~~~~~~ 86 (713)
T PRK15399 77 LPLYAFINTH 86 (713)
T ss_pred CCEEEEcCcc
Confidence 9999987653
No 96
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=90.11 E-value=4.1 Score=42.00 Aligned_cols=111 Identities=22% Similarity=0.180 Sum_probs=72.0
Q ss_pred CEEEEEeCCHHHHHHHHHH------HHhCCCeEE--EECCHHHHHHHHHhcCCCceEEEEecCCC---------CCCHHH
Q 007940 18 LRVLVVDDDLAWLKILEKM------LKKCSYEVT--TCGLARDALSLLRERKDGYDIVISDVNMP---------DMDGFK 80 (584)
Q Consensus 18 mrVLIVDDd~~~r~~L~~l------L~~~gy~V~--~a~~~~eAL~~L~~~~~~pDLVIlDi~MP---------dmdGlE 80 (584)
+|+=|+.|+.....-+... |-+.||.|. ++.+...|-++. +. ++++| || +..-.+
T Consensus 94 iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd~~~ar~l~-~~--G~~~v-----mPlg~pIGsg~Gi~~~~ 165 (248)
T cd04728 94 IKLEVIGDDKTLLPDPIETLKAAEILVKEGFTVLPYCTDDPVLAKRLE-DA--GCAAV-----MPLGSPIGSGQGLLNPY 165 (248)
T ss_pred EEEEEecCccccccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHH-Hc--CCCEe-----CCCCcCCCCCCCCCCHH
Confidence 5666666655433332222 334588877 445555554444 33 37877 66 221267
Q ss_pred HHHHHhccCCCCEEEEEcCCChHHHHhhhhcCCceEE-----eCCCCHHHHHHHHHHHHHh
Q 007940 81 LLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYL-----LKPIRMKELRNIWQHVFRK 136 (584)
Q Consensus 81 LL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL-----~KP~~~~eL~~aI~~vlrr 136 (584)
+++.|++..++|||+=..-...+.+.+++++||+..+ .|--++..+..++..++..
T Consensus 166 ~I~~I~e~~~vpVI~egGI~tpeda~~AmelGAdgVlV~SAIt~a~dP~~ma~af~~Av~a 226 (248)
T cd04728 166 NLRIIIERADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAKAKDPVAMARAFKLAVEA 226 (248)
T ss_pred HHHHHHHhCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEChHhcCCCCHHHHHHHHHHHHHH
Confidence 8888876678999988778899999999999999986 4544556666666665543
No 97
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=89.86 E-value=2.3 Score=50.01 Aligned_cols=79 Identities=16% Similarity=0.260 Sum_probs=59.2
Q ss_pred CEEEEEeCCH------HHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCC
Q 007940 18 LRVLVVDDDL------AWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGL-EMD 90 (584)
Q Consensus 18 mrVLIVDDd~------~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~-~~~ 90 (584)
|+|+||+++. ...+.|.+.|++.||+|+.+.+..+++..++.. ...+.|++++.- . ..++++.++. ...
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~-~~~~~~~~~~~~~~ 76 (714)
T PRK15400 1 MNVIAILNHMGVYFKEEPIRELHRALERLNFQIVYPNDRDDLLKLIENN-ARLCGVIFDWDK--Y-NLELCEEISKMNEN 76 (714)
T ss_pred CcEEEEccccccccccHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhcc-cceeEEEEecch--h-hHHHHHHHHHhCCC
Confidence 5788888762 125667778889999999999999999988853 458899999532 2 2457777754 469
Q ss_pred CCEEEEEcCC
Q 007940 91 LPVIMMSVDG 100 (584)
Q Consensus 91 iPVIvlSa~~ 100 (584)
+||+++....
T Consensus 77 ~Pv~~~~~~~ 86 (714)
T PRK15400 77 LPLYAFANTY 86 (714)
T ss_pred CCEEEEcccc
Confidence 9999987643
No 98
>PF01339 CheB_methylest: CheB methylesterase; InterPro: IPR000673 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the signal transduction response regulator CheB involved in chemotaxis. CheB methylesterase is responsible for removing the methyl group from the gamma-glutamyl methyl ester residues in the methyl-accepting chemotaxis proteins (MCP). The enzyme catalyses the reaction: protein L-glutamate O-methyl ester and water is converted to protein L-glutamate and methanol. CheB is regulated through phosphorylation by CheA. The N-terminal region of the protein is similar to that of other regulatory components of sensory transduction systems. The Myxococcus xanthus FrzG protein also belongs to this family, and is required for the normal aggregation of cells during fruiting body formation.; GO: 0000156 two-component response regulator activity, 0008984 protein-glutamate methylesterase activity, 0000160 two-component signal transduction system (phosphorelay), 0006935 chemotaxis, 0005737 cytoplasm; PDB: 1CHD_A 1A2O_B 3SFT_A.
Probab=89.68 E-value=0.049 Score=53.35 Aligned_cols=66 Identities=14% Similarity=0.251 Sum_probs=42.4
Q ss_pred HHhcccccCHHHHHhhhCCCCCchHH-----HHhhhHH--HHHHHHhhhhh---hhhhccCCCccCCCCCCCCCCccc
Q 007940 218 NQIGFDKVGPKKILDLMNVPWLTREN-----VASHLQK--YRLYLTRLQKD---ELKTSVGGIKQKDSPSKDSAASFG 285 (584)
Q Consensus 218 ~~iG~s~~~Pk~Il~~m~v~~Lt~~~-----V~sHlqk--yr~~~~RL~~~---~~~~~~~g~~~~~~~~~~~~~~~~ 285 (584)
..||++++||++|.+++ ..|+.+. |++||.. +..++++|+.. .++++.+|+..++..-+.-++.+.
T Consensus 2 V~IGaSaGG~~al~~il--~~lp~~~~~~ivivqH~~~~~~~~l~~~L~~~t~l~V~~a~~g~~l~~g~vYi~p~~~~ 77 (182)
T PF01339_consen 2 VAIGASAGGPEALQEIL--SALPADFPAAIVIVQHMPPGFTSSLAERLARHTSLPVREAEDGEPLEPGTVYIAPPGYH 77 (182)
T ss_dssp EEEEE-TTHHHHHCCCH--CCS-TTSSSEEEEEE---TTHHHHHHHHHHHHSSSEEEE--TT-B--TTEEEE--TTSE
T ss_pred EEEEeCCCCHHHHHHHH--HHhccCCCceEEEEECCCCCcchHHHHHHhCcCCCeEEEcCCCCEecCCEEEEeCCCce
Confidence 35899999999999998 7777765 8999998 57777888776 789999999998876555554443
No 99
>PRK00208 thiG thiazole synthase; Reviewed
Probab=89.05 E-value=7.1 Score=40.32 Aligned_cols=111 Identities=22% Similarity=0.169 Sum_probs=72.2
Q ss_pred CEEEEEeCCHHHHHHHH------HHHHhCCCeEE--EECCHHHHHHHHHhcCCCceEEEEecCCC---------CCCHHH
Q 007940 18 LRVLVVDDDLAWLKILE------KMLKKCSYEVT--TCGLARDALSLLRERKDGYDIVISDVNMP---------DMDGFK 80 (584)
Q Consensus 18 mrVLIVDDd~~~r~~L~------~lL~~~gy~V~--~a~~~~eAL~~L~~~~~~pDLVIlDi~MP---------dmdGlE 80 (584)
+|+=|+.|+.....-+. +.|-+.||.|. ++.+...|-++. +. ++++| || +..-.+
T Consensus 94 iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vlpyc~~d~~~ak~l~-~~--G~~~v-----mPlg~pIGsg~gi~~~~ 165 (250)
T PRK00208 94 IKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLE-EA--GCAAV-----MPLGAPIGSGLGLLNPY 165 (250)
T ss_pred EEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHH-Hc--CCCEe-----CCCCcCCCCCCCCCCHH
Confidence 56666666543322222 22334588887 455555554444 33 37877 66 121257
Q ss_pred HHHHHhccCCCCEEEEEcCCChHHHHhhhhcCCceEE-----eCCCCHHHHHHHHHHHHHh
Q 007940 81 LLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYL-----LKPIRMKELRNIWQHVFRK 136 (584)
Q Consensus 81 LL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL-----~KP~~~~eL~~aI~~vlrr 136 (584)
+++.+++..++|||+=..-...+.+.+++++||+..+ .|--++..+.+++..++..
T Consensus 166 ~i~~i~e~~~vpVIveaGI~tpeda~~AmelGAdgVlV~SAItka~dP~~ma~af~~Av~a 226 (250)
T PRK00208 166 NLRIIIEQADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAVAGDPVAMARAFKLAVEA 226 (250)
T ss_pred HHHHHHHhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhCCCCHHHHHHHHHHHHHH
Confidence 7888876678999988888899999999999999986 4545566666666665543
No 100
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=88.06 E-value=6.1 Score=34.94 Aligned_cols=91 Identities=18% Similarity=0.132 Sum_probs=57.4
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEC---CHHHHHHHHHhcCCCceEEEEecC-CCCC-CHHHHHHHHhccCCCCEEEEEcCC
Q 007940 26 DLAWLKILEKMLKKCSYEVTTCG---LARDALSLLRERKDGYDIVISDVN-MPDM-DGFKLLEHVGLEMDLPVIMMSVDG 100 (584)
Q Consensus 26 d~~~r~~L~~lL~~~gy~V~~a~---~~~eAL~~L~~~~~~pDLVIlDi~-MPdm-dGlELL~~Ir~~~~iPVIvlSa~~ 100 (584)
++.-...+..+|++.|++|...+ ...+..+.+.+.+ ||+|.+... .+.. ...++++.++...+-..|++-+..
T Consensus 13 ~~lGl~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~~~~--pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~GG~~ 90 (121)
T PF02310_consen 13 HPLGLLYLAAYLRKAGHEVDILDANVPPEELVEALRAER--PDVVGISVSMTPNLPEAKRLARAIKERNPNIPIVVGGPH 90 (121)
T ss_dssp TSHHHHHHHHHHHHTTBEEEEEESSB-HHHHHHHHHHTT--CSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEEEEESS
T ss_pred hhHHHHHHHHHHHHCCCeEEEECCCCCHHHHHHHHhcCC--CcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEEEECCc
Confidence 45667889999999999998652 2466666676644 999999984 4443 345666666655433344555554
Q ss_pred ChHHHHhhhh--cCCceEEe
Q 007940 101 ETSRVMKGVQ--HGACDYLL 118 (584)
Q Consensus 101 d~~~~~~aL~--~GAdDYL~ 118 (584)
-.......++ .|+|..+.
T Consensus 91 ~t~~~~~~l~~~~~~D~vv~ 110 (121)
T PF02310_consen 91 ATADPEEILREYPGIDYVVR 110 (121)
T ss_dssp SGHHHHHHHHHHHTSEEEEE
T ss_pred hhcChHHHhccCcCcceecC
Confidence 3444445555 56555444
No 101
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=87.74 E-value=11 Score=35.34 Aligned_cols=107 Identities=9% Similarity=0.025 Sum_probs=70.3
Q ss_pred CHHHHHHHHHHHHhCCCeEEE---ECCHHHHHHHHHhcCCCceEEEEecCCCC-CCH-HHHHHHHhcc-CCCCEEEEEcC
Q 007940 26 DLAWLKILEKMLKKCSYEVTT---CGLARDALSLLRERKDGYDIVISDVNMPD-MDG-FKLLEHVGLE-MDLPVIMMSVD 99 (584)
Q Consensus 26 d~~~r~~L~~lL~~~gy~V~~---a~~~~eAL~~L~~~~~~pDLVIlDi~MPd-mdG-lELL~~Ir~~-~~iPVIvlSa~ 99 (584)
|-.=...+..+|+..||+|+- ....++.++.+.+.. +|+|-+-..|-. +.. -++.+.+++. ..-++|++-+.
T Consensus 14 HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~v~aa~~~~--adiVglS~l~~~~~~~~~~~~~~l~~~gl~~~~vivGG~ 91 (134)
T TIGR01501 14 HAVGNKILDHAFTNAGFNVVNLGVLSPQEEFIKAAIETK--ADAILVSSLYGHGEIDCKGLRQKCDEAGLEGILLYVGGN 91 (134)
T ss_pred hhHhHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEecccccCHHHHHHHHHHHHHCCCCCCEEEecCC
Confidence 334456788999999999984 345678888777654 999998887743 222 2344455543 22345556553
Q ss_pred ---CChH---HHHhhhhcCCceEEeCCCCHHHHHHHHHHHH
Q 007940 100 ---GETS---RVMKGVQHGACDYLLKPIRMKELRNIWQHVF 134 (584)
Q Consensus 100 ---~d~~---~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vl 134 (584)
...+ ...++.++|++..+...-..+++.+.+++.+
T Consensus 92 ~vi~~~d~~~~~~~l~~~Gv~~vF~pgt~~~~iv~~l~~~~ 132 (134)
T TIGR01501 92 LVVGKQDFPDVEKRFKEMGFDRVFAPGTPPEVVIADLKKDL 132 (134)
T ss_pred cCcChhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHHh
Confidence 1112 1335788999888887778888888887765
No 102
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=86.86 E-value=8.3 Score=38.08 Aligned_cols=98 Identities=17% Similarity=0.138 Sum_probs=66.9
Q ss_pred CCEEEEE----eCCHHHHHHHHHHHHhCCCeEEEEC---CHHHHHHHHHhcCCCceEEEEecCCCCC--CHHHHHHHHhc
Q 007940 17 GLRVLVV----DDDLAWLKILEKMLKKCSYEVTTCG---LARDALSLLRERKDGYDIVISDVNMPDM--DGFKLLEHVGL 87 (584)
Q Consensus 17 gmrVLIV----DDd~~~r~~L~~lL~~~gy~V~~a~---~~~eAL~~L~~~~~~pDLVIlDi~MPdm--dGlELL~~Ir~ 87 (584)
+.||++. |-|..=..++..+|+..||+|+-.+ ..++.++.+.+.. ||+|-+-..|... ...++++.++.
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~~~~~--~d~v~lS~~~~~~~~~~~~~i~~lr~ 159 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEAVKEHK--PDILGLSALMTTTMGGMKEVIEALKE 159 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEeccccccHHHHHHHHHHHHH
Confidence 4688888 7888888999999999999998443 3567777777654 9999999877653 23455666665
Q ss_pred cC---CCCEEEEEcCCChHHHHhhhhcCCceEEeC
Q 007940 88 EM---DLPVIMMSVDGETSRVMKGVQHGACDYLLK 119 (584)
Q Consensus 88 ~~---~iPVIvlSa~~d~~~~~~aL~~GAdDYL~K 119 (584)
.. +++|+ +-+..-... -+-..|||.|-.-
T Consensus 160 ~~~~~~~~i~-vGG~~~~~~--~~~~~GaD~~~~d 191 (201)
T cd02070 160 AGLRDKVKVM-VGGAPVNQE--FADEIGADGYAED 191 (201)
T ss_pred CCCCcCCeEE-EECCcCCHH--HHHHcCCcEEECC
Confidence 43 34444 544432232 3456699888753
No 103
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=86.37 E-value=5.4 Score=34.73 Aligned_cols=90 Identities=16% Similarity=0.192 Sum_probs=58.5
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCeEEEE---CCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCCEEE
Q 007940 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTC---GLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIM 95 (584)
Q Consensus 19 rVLIVDDd~~~r~~L~~lL~~~gy~V~~a---~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVIv 95 (584)
+||||-........++..+++.|+..... +........+...-...|+||+=...-.-+-...++..-...++|+++
T Consensus 1 ~vliVGG~~~~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~ 80 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIY 80 (97)
T ss_pred CEEEEcCCcccHHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEE
Confidence 58999998899999999999999988877 222222222222212369998866655555555666655567899987
Q ss_pred EEcCCChHHHHhhh
Q 007940 96 MSVDGETSRVMKGV 109 (584)
Q Consensus 96 lSa~~d~~~~~~aL 109 (584)
.-.. ....+.+++
T Consensus 81 ~~~~-~~~~l~~~l 93 (97)
T PF10087_consen 81 SRSR-GVSSLERAL 93 (97)
T ss_pred ECCC-CHHHHHHHH
Confidence 6433 333444444
No 104
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=85.27 E-value=19 Score=34.22 Aligned_cols=115 Identities=15% Similarity=0.058 Sum_probs=74.9
Q ss_pred CCCEEEEE----eCCHHHHHHHHHHHHhCCCeEE---EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHH----HHH
Q 007940 16 AGLRVLVV----DDDLAWLKILEKMLKKCSYEVT---TCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKL----LEH 84 (584)
Q Consensus 16 ~gmrVLIV----DDd~~~r~~L~~lL~~~gy~V~---~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlEL----L~~ 84 (584)
++.||||. |-|..-.+.+.+.|+..||+|+ ...+.+|+....-+.. .|+|.+...- ....++ .+.
T Consensus 11 ~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~v~aA~~~d--v~vIgvSsl~--g~h~~l~~~lve~ 86 (143)
T COG2185 11 ARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEEAVRAAVEED--VDVIGVSSLD--GGHLTLVPGLVEA 86 (143)
T ss_pred CCceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCHHHHHHHHHhcC--CCEEEEEecc--chHHHHHHHHHHH
Confidence 45677664 6777778999999999999998 4557788888775533 7888876532 222333 344
Q ss_pred HhccCCCCEE-EEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHH
Q 007940 85 VGLEMDLPVI-MMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVF 134 (584)
Q Consensus 85 Ir~~~~iPVI-vlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vl 134 (584)
+++...-.|+ ++-+.-..+...+..++|++.++.--....+....+...+
T Consensus 87 lre~G~~~i~v~~GGvip~~d~~~l~~~G~~~if~pgt~~~~~~~~v~~~l 137 (143)
T COG2185 87 LREAGVEDILVVVGGVIPPGDYQELKEMGVDRIFGPGTPIEEALSDLLTRL 137 (143)
T ss_pred HHHhCCcceEEeecCccCchhHHHHHHhCcceeeCCCCCHHHHHHHHHHHH
Confidence 4444322333 4444455555667778999999887666666655554443
No 105
>PRK03958 tRNA 2'-O-methylase; Reviewed
Probab=84.56 E-value=11 Score=37.03 Aligned_cols=93 Identities=10% Similarity=0.161 Sum_probs=65.4
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhCC--CeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCCEEE
Q 007940 18 LRVLVVDDDLAWLKILEKMLKKCS--YEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIM 95 (584)
Q Consensus 18 mrVLIVDDd~~~r~~L~~lL~~~g--y~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVIv 95 (584)
-++.|+.+++..++.++++++.+| |.|....+-+++++.++.....|.|+..+....+ .++-++..... .-|+++
T Consensus 32 ~~~yiv~~~~~q~~~v~~I~~~WGg~fnv~~~~s~~~~i~~~k~~G~vvhLtmyga~~~~--~~~~ir~~~~~-~~p~LI 108 (176)
T PRK03958 32 DKIILASNDEHVKESVEDIVERWGGPFEVEVTKSWKKEIREWKDGGIVVHLTMYGENIQD--VEPEIREAHRK-GEPLLI 108 (176)
T ss_pred ceEEEecCcHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHHHHhCCcEEEEEEecCCccc--hHHHHHHhhcc-CCcEEE
Confidence 378999999999999999999997 7788999999999988742234888888888866 55555443223 456655
Q ss_pred EEc-CCChHHHHhhhhcCCceEEe
Q 007940 96 MSV-DGETSRVMKGVQHGACDYLL 118 (584)
Q Consensus 96 lSa-~~d~~~~~~aL~~GAdDYL~ 118 (584)
+-+ ..-...+ ++ ..||.+
T Consensus 109 vvGg~gvp~ev---ye--~aDynl 127 (176)
T PRK03958 109 VVGAEKVPREV---YE--LADWNV 127 (176)
T ss_pred EEcCCCCCHHH---Hh--hCCEEe
Confidence 554 3333333 32 356665
No 106
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=84.26 E-value=13 Score=37.47 Aligned_cols=102 Identities=16% Similarity=0.202 Sum_probs=67.4
Q ss_pred CCCEEEEE----eCCHHHHHHHHHHHHhCCCeEEEEC---CHHHHHHHHHhcCCCceEEEEecCCCC-CC-HHHHHHHHh
Q 007940 16 AGLRVLVV----DDDLAWLKILEKMLKKCSYEVTTCG---LARDALSLLRERKDGYDIVISDVNMPD-MD-GFKLLEHVG 86 (584)
Q Consensus 16 ~gmrVLIV----DDd~~~r~~L~~lL~~~gy~V~~a~---~~~eAL~~L~~~~~~pDLVIlDi~MPd-md-GlELL~~Ir 86 (584)
..-+|++. |.|..=..++..+|+..||+|+-.+ ..++.++.+.+.+ ||+|.+-..|+. +. -.++++.++
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~~~~~~--~~~V~lS~~~~~~~~~~~~~i~~L~ 164 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILEAAKEHK--ADIIGLSGLLVPSLDEMVEVAEEMN 164 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEccchhccHHHHHHHHHHHH
Confidence 34588888 7788888889999999999998554 3577777777754 999999988864 32 245566665
Q ss_pred ccC-CCCEEEEEcCCChHHHHh----hhhcCCceEEeCC
Q 007940 87 LEM-DLPVIMMSVDGETSRVMK----GVQHGACDYLLKP 120 (584)
Q Consensus 87 ~~~-~iPVIvlSa~~d~~~~~~----aL~~GAdDYL~KP 120 (584)
... +++|+ +.+..-.+...+ +-..|||.|-.-.
T Consensus 165 ~~~~~~~i~-vGG~~~~~~~~~~~~~~~~~gad~y~~da 202 (213)
T cd02069 165 RRGIKIPLL-IGGAATSRKHTAVKIAPEYDGPVVYVKDA 202 (213)
T ss_pred hcCCCCeEE-EEChhcCHHHHhhhhccccCCCceEecCH
Confidence 443 45544 444332222222 1346998886544
No 107
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=81.96 E-value=12 Score=37.19 Aligned_cols=85 Identities=20% Similarity=0.300 Sum_probs=56.3
Q ss_pred HHHHHHHh-CCCeEE-EECCHHHHHHHHHhcCCCceEEEEecC-------CCCCCHHHHHHHHhccCCCCEEEEEcCCCh
Q 007940 32 ILEKMLKK-CSYEVT-TCGLARDALSLLRERKDGYDIVISDVN-------MPDMDGFKLLEHVGLEMDLPVIMMSVDGET 102 (584)
Q Consensus 32 ~L~~lL~~-~gy~V~-~a~~~~eAL~~L~~~~~~pDLVIlDi~-------MPdmdGlELL~~Ir~~~~iPVIvlSa~~d~ 102 (584)
.+.+.+++ .+..+. .+.+.+++..+.. .++|+|.+... .....+++++++++....+|||...+-.+.
T Consensus 109 ~~i~~~~~~~~i~vi~~v~t~ee~~~a~~---~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~~iPvia~GGI~t~ 185 (221)
T PRK01130 109 ELVKRIKEYPGQLLMADCSTLEEGLAAQK---LGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAVGCPVIAEGRINTP 185 (221)
T ss_pred HHHHHHHhCCCCeEEEeCCCHHHHHHHHH---cCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhCCCCEEEECCCCCH
Confidence 34444444 555544 4566777755443 23788865321 122335788888876668999988877788
Q ss_pred HHHHhhhhcCCceEEeC
Q 007940 103 SRVMKGVQHGACDYLLK 119 (584)
Q Consensus 103 ~~~~~aL~~GAdDYL~K 119 (584)
+.+.++++.||+.++.=
T Consensus 186 ~~~~~~l~~GadgV~iG 202 (221)
T PRK01130 186 EQAKKALELGAHAVVVG 202 (221)
T ss_pred HHHHHHHHCCCCEEEEc
Confidence 99999999999988654
No 108
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=81.61 E-value=25 Score=36.62 Aligned_cols=100 Identities=17% Similarity=0.180 Sum_probs=69.6
Q ss_pred HHHHHhCCCeEEEECCHHHHHH-HHHhcCCCceEEEEecCCCCCCH-----HHHHHHHhccCCCCEEEEEcCCChHHHHh
Q 007940 34 EKMLKKCSYEVTTCGLARDALS-LLRERKDGYDIVISDVNMPDMDG-----FKLLEHVGLEMDLPVIMMSVDGETSRVMK 107 (584)
Q Consensus 34 ~~lL~~~gy~V~~a~~~~eAL~-~L~~~~~~pDLVIlDi~MPdmdG-----lELL~~Ir~~~~iPVIvlSa~~d~~~~~~ 107 (584)
.+.|-+.||.|..+.+..-.+. .|.+.. . .++|=+.-|-.+| -..++.|++..++|||+-.+-+..+.+..
T Consensus 130 ae~Lv~eGF~VlPY~~~D~v~a~rLed~G--c-~aVMPlgsPIGSg~Gl~n~~~l~~i~e~~~vpVivdAGIgt~sDa~~ 206 (267)
T CHL00162 130 AEFLVKKGFTVLPYINADPMLAKHLEDIG--C-ATVMPLGSPIGSGQGLQNLLNLQIIIENAKIPVIIDAGIGTPSEASQ 206 (267)
T ss_pred HHHHHHCCCEEeecCCCCHHHHHHHHHcC--C-eEEeeccCcccCCCCCCCHHHHHHHHHcCCCcEEEeCCcCCHHHHHH
Confidence 4556678999986655433222 333322 2 4556665564443 34577777778899999988899999999
Q ss_pred hhhcCCceEE-----eCCCCHHHHHHHHHHHHHh
Q 007940 108 GVQHGACDYL-----LKPIRMKELRNIWQHVFRK 136 (584)
Q Consensus 108 aL~~GAdDYL-----~KP~~~~eL~~aI~~vlrr 136 (584)
++++|+++.+ .|--++.++..+++.+.+.
T Consensus 207 AmElGaDgVL~nSaIakA~dP~~mA~a~~~AV~A 240 (267)
T CHL00162 207 AMELGASGVLLNTAVAQAKNPEQMAKAMKLAVQA 240 (267)
T ss_pred HHHcCCCEEeecceeecCCCHHHHHHHHHHHHHH
Confidence 9999999875 5666778888888777653
No 109
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=80.83 E-value=16 Score=43.35 Aligned_cols=116 Identities=10% Similarity=-0.012 Sum_probs=76.4
Q ss_pred CEEEEE----eCCHHHHHHHHHHHHhCCCeEEE---ECCHHHHHHHHHhcCCCceEEEEecCCCCC--CHHHHHHHHhcc
Q 007940 18 LRVLVV----DDDLAWLKILEKMLKKCSYEVTT---CGLARDALSLLRERKDGYDIVISDVNMPDM--DGFKLLEHVGLE 88 (584)
Q Consensus 18 mrVLIV----DDd~~~r~~L~~lL~~~gy~V~~---a~~~~eAL~~L~~~~~~pDLVIlDi~MPdm--dGlELL~~Ir~~ 88 (584)
.+|++. |.+..-...+..+|+..||+|.. ..+.+++.+...+.. +|+|.+...+... ..-++++.|+..
T Consensus 583 pkV~LatlG~d~H~~ra~fv~~~l~~~GfeV~~~~~~~s~e~~v~aa~~~~--a~ivvlcs~d~~~~e~~~~l~~~Lk~~ 660 (714)
T PRK09426 583 PRILVAKMGQDGHDRGAKVIATAFADLGFDVDIGPLFQTPEEAARQAVEND--VHVVGVSSLAAGHKTLVPALIEALKKL 660 (714)
T ss_pred ceEEEEecCCcchhHhHHHHHHHHHhCCeeEecCCCCCCHHHHHHHHHHcC--CCEEEEeccchhhHHHHHHHHHHHHhc
Confidence 355543 34555567788899999999963 235678888777643 8999987766442 244666777655
Q ss_pred CCCCE-EEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHH
Q 007940 89 MDLPV-IMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFR 135 (584)
Q Consensus 89 ~~iPV-IvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlr 135 (584)
..-.| |++.+..-........++|+++||..-.+..++...+++.++
T Consensus 661 G~~~v~vl~GG~~~~~~~~~l~~aGvD~~i~~g~d~~~~L~~l~~~l~ 708 (714)
T PRK09426 661 GREDIMVVVGGVIPPQDYDFLYEAGVAAIFGPGTVIADAAIDLLELLS 708 (714)
T ss_pred CCCCcEEEEeCCCChhhHHHHHhCCCCEEECCCCCHHHHHHHHHHHHH
Confidence 32123 445543223334556789999999998888888877777664
No 110
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=79.98 E-value=23 Score=34.48 Aligned_cols=69 Identities=16% Similarity=0.209 Sum_probs=48.5
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEecCCCCC--------CHHHHHHHHhccCC-CCEEEEEcCCChHHHHhhhhcCCceE
Q 007940 46 TCGLARDALSLLRERKDGYDIVISDVNMPDM--------DGFKLLEHVGLEMD-LPVIMMSVDGETSRVMKGVQHGACDY 116 (584)
Q Consensus 46 ~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdm--------dGlELL~~Ir~~~~-iPVIvlSa~~d~~~~~~aL~~GAdDY 116 (584)
.+.+..++.++... .+|.|.+.--.|.. .|++.++.++.... +||++..+- ..+.+.+++.+||+.+
T Consensus 110 ~~~t~~e~~~a~~~---gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~a~GGI-~~~~i~~~~~~Ga~gv 185 (212)
T PRK00043 110 STHTLEEAAAALAA---GADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAVGDIPIVAIGGI-TPENAPEVLEAGADGV 185 (212)
T ss_pred eCCCHHHHHHHhHc---CCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCc-CHHHHHHHHHcCCCEE
Confidence 44555676666542 48999887555532 35888888865444 898877655 5678889999999998
Q ss_pred Ee
Q 007940 117 LL 118 (584)
Q Consensus 117 L~ 118 (584)
..
T Consensus 186 ~~ 187 (212)
T PRK00043 186 AV 187 (212)
T ss_pred EE
Confidence 74
No 111
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=79.37 E-value=18 Score=32.64 Aligned_cols=105 Identities=11% Similarity=0.082 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHhCCCeEEEEC--CHHHHHHHHHhcCCCceEEEEecCCCCC-CHHHHHHHHhcc-CCCCEEEEEcCCChH
Q 007940 28 AWLKILEKMLKKCSYEVTTCG--LARDALSLLRERKDGYDIVISDVNMPDM-DGFKLLEHVGLE-MDLPVIMMSVDGETS 103 (584)
Q Consensus 28 ~~r~~L~~lL~~~gy~V~~a~--~~~eAL~~L~~~~~~pDLVIlDi~MPdm-dGlELL~~Ir~~-~~iPVIvlSa~~d~~ 103 (584)
.....+..+|++.|+++.... ..++.++.+... ..||+|.+-+.-+.. ...++++.+|+. ++++||+--.+.. .
T Consensus 3 lgl~~~aa~l~~~g~~v~~~~~~~~~~~~~~~~~~-~~pdiv~~S~~~~~~~~~~~~~~~ik~~~p~~~iv~GG~~~t-~ 80 (127)
T cd02068 3 LGLAYLAAVLEDAGFIVAEHDVLSADDIVEDIKEL-LKPDVVGISLMTSAIYEALELAKIAKEVLPNVIVVVGGPHAT-F 80 (127)
T ss_pred chHHHHHHHHHHCCCeeeecCCCCHHHHHHHHHHh-cCCCEEEEeeccccHHHHHHHHHHHHHHCCCCEEEECCcchh-h
Confidence 345678889999887766433 344555555441 249999999855544 356677778754 4555554433322 1
Q ss_pred HHHhhhhcCCceEEeCCCCHHHHHHHHHHHH
Q 007940 104 RVMKGVQHGACDYLLKPIRMKELRNIWQHVF 134 (584)
Q Consensus 104 ~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vl 134 (584)
.....+..-..||+.+--....+...++++.
T Consensus 81 ~p~~~~~~~~~D~vv~GEgE~~~~~l~~~l~ 111 (127)
T cd02068 81 FPEEILEEPGVDFVVIGEGEETFLKLLEELE 111 (127)
T ss_pred CHHHHhcCCCCCEEEECCcHHHHHHHHHHHH
Confidence 1222234445678888666566666666543
No 112
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=79.35 E-value=21 Score=35.52 Aligned_cols=71 Identities=20% Similarity=0.324 Sum_probs=50.2
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEecC-------CCCCCHHHHHHHHhccCCCCEEEEEcCCChHHHHhhhhcCCceEEe
Q 007940 46 TCGLARDALSLLRERKDGYDIVISDVN-------MPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLL 118 (584)
Q Consensus 46 ~a~~~~eAL~~L~~~~~~pDLVIlDi~-------MPdmdGlELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~ 118 (584)
.+.+.+++..+... ++|+|.+... .....++++++.++...++||+....-.+.+.+.+++..||+..+.
T Consensus 129 ~v~t~~ea~~a~~~---G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~~ipvia~GGI~~~~~~~~~l~~GadgV~v 205 (219)
T cd04729 129 DISTLEEALNAAKL---GFDIIGTTLSGYTEETAKTEDPDFELLKELRKALGIPVIAEGRINSPEQAAKALELGADAVVV 205 (219)
T ss_pred ECCCHHHHHHHHHc---CCCEEEccCccccccccCCCCCCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 55667777665542 3788765321 1122357888888765689999888777889999999999998876
Q ss_pred C
Q 007940 119 K 119 (584)
Q Consensus 119 K 119 (584)
-
T Consensus 206 G 206 (219)
T cd04729 206 G 206 (219)
T ss_pred c
Confidence 4
No 113
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=78.54 E-value=37 Score=31.65 Aligned_cols=101 Identities=11% Similarity=0.009 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHhCCCeEEE---ECCHHHHHHHHHhcCCCceEEEEecCCCC-CCH-HHHHHHHhcc--CCCCEEEEEcC
Q 007940 27 LAWLKILEKMLKKCSYEVTT---CGLARDALSLLRERKDGYDIVISDVNMPD-MDG-FKLLEHVGLE--MDLPVIMMSVD 99 (584)
Q Consensus 27 ~~~r~~L~~lL~~~gy~V~~---a~~~~eAL~~L~~~~~~pDLVIlDi~MPd-mdG-lELL~~Ir~~--~~iPVIvlSa~ 99 (584)
-.=..++..+|+..||+|+- ....++.++.+.+.. +|+|.+-..|.. |.. -++.+.+++. .+++ |++-+.
T Consensus 13 diGkniv~~~L~~~GfeVidLG~~v~~e~~v~aa~~~~--adiVglS~L~t~~~~~~~~~~~~l~~~gl~~v~-vivGG~ 89 (128)
T cd02072 13 AVGNKILDHAFTEAGFNVVNLGVLSPQEEFIDAAIETD--ADAILVSSLYGHGEIDCKGLREKCDEAGLKDIL-LYVGGN 89 (128)
T ss_pred HHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEeccccCCHHHHHHHHHHHHHCCCCCCe-EEEECC
Confidence 33456788999999999983 335677777777644 999999887754 333 3445555543 2433 444443
Q ss_pred C-----C-hHHHHhhhhcCCceEEeCCCCHHHHHHHH
Q 007940 100 G-----E-TSRVMKGVQHGACDYLLKPIRMKELRNIW 130 (584)
Q Consensus 100 ~-----d-~~~~~~aL~~GAdDYL~KP~~~~eL~~aI 130 (584)
. + .+...++.++|++..+...-...++...+
T Consensus 90 ~~i~~~d~~~~~~~L~~~Gv~~vf~pgt~~~~i~~~l 126 (128)
T cd02072 90 LVVGKQDFEDVEKRFKEMGFDRVFAPGTPPEEAIADL 126 (128)
T ss_pred CCCChhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHH
Confidence 1 1 22345677899999888777777766554
No 114
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=77.96 E-value=42 Score=29.33 Aligned_cols=105 Identities=18% Similarity=0.315 Sum_probs=64.1
Q ss_pred CEEEEEeCCHHHHHHHHHHHHh-CCCeEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCCEEE
Q 007940 18 LRVLVVDDDLAWLKILEKMLKK-CSYEVT-TCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIM 95 (584)
Q Consensus 18 mrVLIVDDd~~~r~~L~~lL~~-~gy~V~-~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVIv 95 (584)
|||.||-=-..-+..+..+++. .++++. .++...+..+.+.+.. ... +..| ++.+-....+-+|+
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~-~~~-~~~~-----------~~~ll~~~~~D~V~ 67 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKY-GIP-VYTD-----------LEELLADEDVDAVI 67 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHT-TSE-EESS-----------HHHHHHHTTESEEE
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHh-ccc-chhH-----------HHHHHHhhcCCEEE
Confidence 4778888777777777777776 345554 4444343334333321 233 4444 23332223344555
Q ss_pred EEcC--CChHHHHhhhhcCCceEEeCCC--CHHHHHHHHHHHHH
Q 007940 96 MSVD--GETSRVMKGVQHGACDYLLKPI--RMKELRNIWQHVFR 135 (584)
Q Consensus 96 lSa~--~d~~~~~~aL~~GAdDYL~KP~--~~~eL~~aI~~vlr 135 (584)
++.. ...+.+..+++.|..=|+-||+ +.+++.+.++.+-+
T Consensus 68 I~tp~~~h~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~ 111 (120)
T PF01408_consen 68 IATPPSSHAEIAKKALEAGKHVLVEKPLALTLEEAEELVEAAKE 111 (120)
T ss_dssp EESSGGGHHHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHHHH
T ss_pred EecCCcchHHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHHHH
Confidence 5543 5667889999999999999999 77788777766544
No 115
>PRK07239 bifunctional uroporphyrinogen-III synthetase/response regulator domain protein; Validated
Probab=76.73 E-value=20 Score=38.70 Aligned_cols=44 Identities=11% Similarity=0.115 Sum_probs=30.2
Q ss_pred hhHHHHHHHHHHHhcccccCHHHHHhhhCCCCCchHHHHhhhHHHHHHHHhhhhh
Q 007940 207 IDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLTRLQKD 261 (584)
Q Consensus 207 ~eLhqkFv~av~~iG~s~~~Pk~Il~~m~v~~Lt~~~V~sHlqkyr~~~~RL~~~ 261 (584)
..+...|+++.++ ..+.+.|++.+ |.... .. ...+.+++||+++
T Consensus 312 ~~lL~~L~~~~~~----vvsr~~L~~~v---w~~~~--~~--~~l~~~I~rLRkk 355 (381)
T PRK07239 312 MALLRALAARPGR----VVSREDLLAAL---PGGGT--DE--HAVETAVARLRTA 355 (381)
T ss_pred HHHHHHHHhCCCc----eEeHHHHHHHh---cCCCC--Cc--cHHHHHHHHHHHh
Confidence 5677778887775 88899998554 65432 22 2267888898887
No 116
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=74.38 E-value=42 Score=33.86 Aligned_cols=96 Identities=16% Similarity=0.225 Sum_probs=60.2
Q ss_pred HHHHHHhCC-CeEEEECCHHHHHHHHHhcC-CCceEEEEecCCCCCCHHHHHHHHhccCCCCEEEEEcCCChHHHHhhhh
Q 007940 33 LEKMLKKCS-YEVTTCGLARDALSLLRERK-DGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQ 110 (584)
Q Consensus 33 L~~lL~~~g-y~V~~a~~~~eAL~~L~~~~-~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~ 110 (584)
+...|.+.+ .-|....+.++|+..++... .+++ ++.+.|-.-++++.++.++...+--+|-.-.-.+.+.+..+++
T Consensus 8 ~~~~l~~~~~iaV~r~~~~~~a~~i~~al~~~Gi~--~iEitl~~~~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~ 85 (212)
T PRK05718 8 IEEILRAGPVVPVIVINKLEDAVPLAKALVAGGLP--VLEVTLRTPAALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIE 85 (212)
T ss_pred HHHHHHHCCEEEEEEcCCHHHHHHHHHHHHHcCCC--EEEEecCCccHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHH
Confidence 445566666 34556677888888776532 2366 4455555558999999997543322333333356688999999
Q ss_pred cCCceEEeCCCCHHHHHHHHH
Q 007940 111 HGACDYLLKPIRMKELRNIWQ 131 (584)
Q Consensus 111 ~GAdDYL~KP~~~~eL~~aI~ 131 (584)
+||+ |++-|.-..++.+..+
T Consensus 86 aGA~-FivsP~~~~~vi~~a~ 105 (212)
T PRK05718 86 AGAQ-FIVSPGLTPPLLKAAQ 105 (212)
T ss_pred cCCC-EEECCCCCHHHHHHHH
Confidence 9987 6666665556655433
No 117
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=73.93 E-value=25 Score=34.71 Aligned_cols=97 Identities=19% Similarity=0.115 Sum_probs=62.0
Q ss_pred CEEEEE----eCCHHHHHHHHHHHHhCCCeEEEEC---CHHHHHHHHHhcCCCceEEEEecCCCC-CCH-HHHHHHHhcc
Q 007940 18 LRVLVV----DDDLAWLKILEKMLKKCSYEVTTCG---LARDALSLLRERKDGYDIVISDVNMPD-MDG-FKLLEHVGLE 88 (584)
Q Consensus 18 mrVLIV----DDd~~~r~~L~~lL~~~gy~V~~a~---~~~eAL~~L~~~~~~pDLVIlDi~MPd-mdG-lELL~~Ir~~ 88 (584)
-+|++. |.|..=..++..+|+..||+|+-.+ ..++.++.+.+.. ||+|.+-..|.. +.. .++++.++..
T Consensus 85 ~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~~~~--pd~v~lS~~~~~~~~~~~~~i~~l~~~ 162 (197)
T TIGR02370 85 GKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKVKKEK--PLMLTGSALMTTTMYGQKDINDKLKEE 162 (197)
T ss_pred CeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcC--CCEEEEccccccCHHHHHHHHHHHHHc
Confidence 466655 4556666788999999999998544 3467777777654 999999987764 222 3455666554
Q ss_pred --CCCCEEEEEcCCChHHHHhhhhcCCceEEe
Q 007940 89 --MDLPVIMMSVDGETSRVMKGVQHGACDYLL 118 (584)
Q Consensus 89 --~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~ 118 (584)
..-+-|++.+..-... -+-+.|||.|-.
T Consensus 163 ~~~~~v~i~vGG~~~~~~--~~~~~gad~~~~ 192 (197)
T TIGR02370 163 GYRDSVKFMVGGAPVTQD--WADKIGADVYGE 192 (197)
T ss_pred CCCCCCEEEEEChhcCHH--HHHHhCCcEEeC
Confidence 2223344554432222 345679998864
No 118
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=70.07 E-value=54 Score=32.58 Aligned_cols=98 Identities=18% Similarity=0.189 Sum_probs=58.9
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEecCCCC-------CCHHHHHHHHhcc
Q 007940 17 GLRVLVVDDDLAWLKILEKMLKKCSYEVT-TCGLARDALSLLRERKDGYDIVISDVNMPD-------MDGFKLLEHVGLE 88 (584)
Q Consensus 17 gmrVLIVDDd~~~r~~L~~lL~~~gy~V~-~a~~~~eAL~~L~~~~~~pDLVIlDi~MPd-------mdGlELL~~Ir~~ 88 (584)
+...+++-+. .. ..+.+.+++.+..+. .+.+..++..+. +. ..|.|+++-.-++ ...++++++++..
T Consensus 80 g~d~v~l~~~-~~-~~~~~~~~~~~i~~i~~v~~~~~~~~~~-~~--gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~ 154 (236)
T cd04730 80 GVPVVSFSFG-PP-AEVVERLKAAGIKVIPTVTSVEEARKAE-AA--GADALVAQGAEAGGHRGTFDIGTFALVPEVRDA 154 (236)
T ss_pred CCCEEEEcCC-CC-HHHHHHHHHcCCEEEEeCCCHHHHHHHH-Hc--CCCEEEEeCcCCCCCCCccccCHHHHHHHHHHH
Confidence 3344444443 11 223334444454444 334555554433 32 3788887643211 2457788888766
Q ss_pred CCCCEEEEEcCCChHHHHhhhhcCCceEEeC
Q 007940 89 MDLPVIMMSVDGETSRVMKGVQHGACDYLLK 119 (584)
Q Consensus 89 ~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~K 119 (584)
.++||++.-+-...+.+.+++..||+..++-
T Consensus 155 ~~~Pvi~~GGI~~~~~v~~~l~~GadgV~vg 185 (236)
T cd04730 155 VDIPVIAAGGIADGRGIAAALALGADGVQMG 185 (236)
T ss_pred hCCCEEEECCCCCHHHHHHHHHcCCcEEEEc
Confidence 6799998777777688999999999988764
No 119
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=69.69 E-value=21 Score=36.81 Aligned_cols=115 Identities=17% Similarity=0.187 Sum_probs=65.9
Q ss_pred CEEEEEeCCHH----HHHH--HHHHHHhCCCeEEEECCHHHHHH-HHHhcCCCceEEEEecCCCCCCH-----HHHHHHH
Q 007940 18 LRVLVVDDDLA----WLKI--LEKMLKKCSYEVTTCGLARDALS-LLRERKDGYDIVISDVNMPDMDG-----FKLLEHV 85 (584)
Q Consensus 18 mrVLIVDDd~~----~r~~--L~~lL~~~gy~V~~a~~~~eAL~-~L~~~~~~pDLVIlDi~MPdmdG-----lELL~~I 85 (584)
+|+=|+.|+.. ..+. -.+.|-+.||.|..+.+..-.+. .|.+.. . .++|=+.-|-.+| -..++.|
T Consensus 94 IKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~VlPY~~~D~v~akrL~d~G--c-aavMPlgsPIGSg~Gi~n~~~l~~i 170 (247)
T PF05690_consen 94 IKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEDAG--C-AAVMPLGSPIGSGRGIQNPYNLRII 170 (247)
T ss_dssp EEE--BS-TTT--B-HHHHHHHHHHHHHTT-EEEEEE-S-HHHHHHHHHTT----SEBEEBSSSTTT---SSTHHHHHHH
T ss_pred EEEEEeCCCCCcCCChhHHHHHHHHHHHCCCEEeecCCCCHHHHHHHHHCC--C-CEEEecccccccCcCCCCHHHHHHH
Confidence 45656655432 2222 34556678999985554433222 333322 2 3456666665554 3456777
Q ss_pred hccCCCCEEEEEcCCChHHHHhhhhcCCceEEeC-----CCCHHHHHHHHHHHHH
Q 007940 86 GLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLK-----PIRMKELRNIWQHVFR 135 (584)
Q Consensus 86 r~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~K-----P~~~~eL~~aI~~vlr 135 (584)
++..++|||+=.+-+....+..|+++|++..|+- --++..+.++.++...
T Consensus 171 ~~~~~vPvIvDAGiG~pSdaa~AMElG~daVLvNTAiA~A~dPv~MA~Af~~AV~ 225 (247)
T PF05690_consen 171 IERADVPVIVDAGIGTPSDAAQAMELGADAVLVNTAIAKAKDPVAMARAFKLAVE 225 (247)
T ss_dssp HHHGSSSBEEES---SHHHHHHHHHTT-SEEEESHHHHTSSSHHHHHHHHHHHHH
T ss_pred HHhcCCcEEEeCCCCCHHHHHHHHHcCCceeehhhHHhccCCHHHHHHHHHHHHH
Confidence 6667999999988899999999999999999864 4455566666666553
No 120
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=69.42 E-value=15 Score=36.57 Aligned_cols=76 Identities=18% Similarity=0.295 Sum_probs=52.4
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecC--CCCCCH--HHHHHHHhccCCCCE
Q 007940 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVN--MPDMDG--FKLLEHVGLEMDLPV 93 (584)
Q Consensus 18 mrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~--MPdmdG--lELL~~Ir~~~~iPV 93 (584)
++||+||..-.+--.|.++|+..|.+|.+..+....+..++.. .||.|++--. -|.--| .+++++. ..++||
T Consensus 2 ~~IL~IDNyDSFtyNLv~yl~~lg~~v~V~rnd~~~~~~~~~~--~pd~iviSPGPG~P~d~G~~~~~i~~~--~~~~Pi 77 (191)
T COG0512 2 MMILLIDNYDSFTYNLVQYLRELGAEVTVVRNDDISLELIEAL--KPDAIVISPGPGTPKDAGISLELIRRF--AGRIPI 77 (191)
T ss_pred ceEEEEECccchHHHHHHHHHHcCCceEEEECCccCHHHHhhc--CCCEEEEcCCCCChHHcchHHHHHHHh--cCCCCE
Confidence 6899999999999999999999998877666543333344433 3899998653 333223 4455554 457899
Q ss_pred EEEE
Q 007940 94 IMMS 97 (584)
Q Consensus 94 IvlS 97 (584)
+=++
T Consensus 78 LGVC 81 (191)
T COG0512 78 LGVC 81 (191)
T ss_pred EEEC
Confidence 8775
No 121
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=69.21 E-value=17 Score=35.56 Aligned_cols=67 Identities=30% Similarity=0.364 Sum_probs=45.8
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhCCCe---EEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCH---HHHHHHHh
Q 007940 18 LRVLVVDDDLAWLKILEKMLKKCSYE---VTTCGLARDALSLLRERKDGYDIVISDVNMPDMDG---FKLLEHVG 86 (584)
Q Consensus 18 mrVLIVDDd~~~r~~L~~lL~~~gy~---V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdG---lELL~~Ir 86 (584)
-+|..||-++.....+++-++..+.. .+...++..++..+......+|+|++|- |-..+ .++++.+.
T Consensus 66 ~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDP--PY~~~~~~~~~l~~l~ 138 (183)
T PF03602_consen 66 KSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDP--PYAKGLYYEELLELLA 138 (183)
T ss_dssp SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE----STTSCHHHHHHHHHHH
T ss_pred CeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEECC--CcccchHHHHHHHHHH
Confidence 48999999999999999999988732 3356777778876644345699999995 33322 45666664
No 122
>PF09936 Methyltrn_RNA_4: SAM-dependent RNA methyltransferase; InterPro: IPR019230 This entry contains proteins that have no known function. They are found as separate proteins and as a C-terminal domain to tRNA (guanine-N(1)-)-methyltransferases to which they are structurally related. ; PDB: 3DCM_X.
Probab=69.14 E-value=46 Score=32.98 Aligned_cols=101 Identities=25% Similarity=0.348 Sum_probs=56.1
Q ss_pred EEEEEeCCHHHHHHHHHHHHh----CC--C---------eEEEECCHHHHHHHHHhcC-CCceEEEEecC-CCCCCHHHH
Q 007940 19 RVLVVDDDLAWLKILEKMLKK----CS--Y---------EVTTCGLARDALSLLRERK-DGYDIVISDVN-MPDMDGFKL 81 (584)
Q Consensus 19 rVLIVDDd~~~r~~L~~lL~~----~g--y---------~V~~a~~~~eAL~~L~~~~-~~pDLVIlDi~-MPdmdGlEL 81 (584)
+-.||..-+..++++++++.- .| | .|..+.+-++|++.+++.. ..|-+|..+.. -|+.=.++-
T Consensus 44 ~yyiVtPl~~Q~~l~~ril~hW~~G~G~~yNp~R~eAl~~v~~~~sle~a~~~I~~~~G~~P~~v~TsAr~~~~~is~~~ 123 (185)
T PF09936_consen 44 GYYIVTPLEAQRELAERILGHWQEGYGAEYNPDRKEALSLVRVVDSLEEAIEDIEEEEGKRPLLVATSARKYPNTISYAE 123 (185)
T ss_dssp EEEEE---HHHHHHHHHHHHHHHTSGGGGT-SSSHHHHTTEEEESSHHHHHHHHHHHHSS--EEEE--SS--SS-B-HHH
T ss_pred CEEEecchHHHHHHHHHHHHhcccCCCcCcCcCHHHHHhHhccHhhHHHHHHHHHHHhCCCCEEEEecCcCCCCCcCHHH
Confidence 567888888888888888752 22 2 3778899999999888743 34899999998 455556666
Q ss_pred HHHHhccCCCCEEEEE--cCCChHHHHhhhhcCCceEEeCCCCHH
Q 007940 82 LEHVGLEMDLPVIMMS--VDGETSRVMKGVQHGACDYLLKPIRMK 124 (584)
Q Consensus 82 L~~Ir~~~~iPVIvlS--a~~d~~~~~~aL~~GAdDYL~KP~~~~ 124 (584)
+++.-...+-|++++- +.+-.+.+++ .+||++.|+...
T Consensus 124 lr~~l~~~~~P~LllFGTGwGL~~ev~~-----~~D~iLePI~g~ 163 (185)
T PF09936_consen 124 LRRMLEEEDRPVLLLFGTGWGLAPEVME-----QCDYILEPIRGA 163 (185)
T ss_dssp HHHHHHH--S-EEEEE--TT---HHHHT-----T-SEEB--TTTT
T ss_pred HHHHHhccCCeEEEEecCCCCCCHHHHH-----hcCeeEcccccC
Confidence 6665444567777664 4444444333 478999998654
No 123
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=68.83 E-value=55 Score=37.26 Aligned_cols=101 Identities=18% Similarity=0.259 Sum_probs=65.7
Q ss_pred CCCEEEEEeCCH----HHHHHHHHHHHhCC-CeEE--EECCHHHHHHHHHhcCCCceEEEEec--------------CCC
Q 007940 16 AGLRVLVVDDDL----AWLKILEKMLKKCS-YEVT--TCGLARDALSLLRERKDGYDIVISDV--------------NMP 74 (584)
Q Consensus 16 ~gmrVLIVDDd~----~~r~~L~~lL~~~g-y~V~--~a~~~~eAL~~L~~~~~~pDLVIlDi--------------~MP 74 (584)
+|..|+++|-.. ...+.++.+=+.++ ..++ -+.+.++|..+++. +.|.|.+-+ ..|
T Consensus 259 ag~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~a---GaD~i~vg~g~G~~~~t~~~~~~g~~ 335 (505)
T PLN02274 259 AGVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQA---GVDGLRVGMGSGSICTTQEVCAVGRG 335 (505)
T ss_pred cCCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHc---CcCEEEECCCCCccccCccccccCCC
Confidence 355677777532 22234444444443 3333 36678888887763 478887642 123
Q ss_pred CCCHHHHHHHHhccCCCCEEEEEcCCChHHHHhhhhcCCceEEeC
Q 007940 75 DMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLK 119 (584)
Q Consensus 75 dmdGlELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~K 119 (584)
....+..+..+.....+|||.-..-.....+.+|+.+||+....=
T Consensus 336 ~~~~i~~~~~~~~~~~vpVIadGGI~~~~di~kAla~GA~~V~vG 380 (505)
T PLN02274 336 QATAVYKVASIAAQHGVPVIADGGISNSGHIVKALTLGASTVMMG 380 (505)
T ss_pred cccHHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEc
Confidence 334556666665556799999888889999999999999987653
No 124
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=68.42 E-value=37 Score=36.02 Aligned_cols=84 Identities=18% Similarity=0.155 Sum_probs=58.9
Q ss_pred HHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEecCCC-----CCCHHHHHHHHhccCCCCEEEEEcCCChHHHH
Q 007940 33 LEKMLKKCSYEVT-TCGLARDALSLLRERKDGYDIVISDVNMP-----DMDGFKLLEHVGLEMDLPVIMMSVDGETSRVM 106 (584)
Q Consensus 33 L~~lL~~~gy~V~-~a~~~~eAL~~L~~~~~~pDLVIlDi~MP-----dmdGlELL~~Ir~~~~iPVIvlSa~~d~~~~~ 106 (584)
+-+.++..|..|. .+.+.++|..+.+. ++|.|++.-.-. ...-+.++++++...++|||.--.-.+.+.+.
T Consensus 101 ~i~~lk~~g~~v~~~v~s~~~a~~a~~~---GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~~~~iPviaaGGI~~~~~~~ 177 (307)
T TIGR03151 101 YIPRLKENGVKVIPVVASVALAKRMEKA---GADAVIAEGMESGGHIGELTTMALVPQVVDAVSIPVIAAGGIADGRGMA 177 (307)
T ss_pred HHHHHHHcCCEEEEEcCCHHHHHHHHHc---CCCEEEEECcccCCCCCCCcHHHHHHHHHHHhCCCEEEECCCCCHHHHH
Confidence 4445566675544 56777777665543 489998844211 22348888888766679999887778888899
Q ss_pred hhhhcCCceEEeC
Q 007940 107 KGVQHGACDYLLK 119 (584)
Q Consensus 107 ~aL~~GAdDYL~K 119 (584)
+++.+||+...+=
T Consensus 178 ~al~~GA~gV~iG 190 (307)
T TIGR03151 178 AAFALGAEAVQMG 190 (307)
T ss_pred HHHHcCCCEeecc
Confidence 9999999987654
No 125
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=67.83 E-value=52 Score=32.76 Aligned_cols=66 Identities=18% Similarity=0.322 Sum_probs=47.1
Q ss_pred HHHHHHHHhcCCCce-EEEEecCCCCC-CH--HHHHHHHhccCCCCEEEEEcCCChHHHHhhhhcCCceEEe
Q 007940 51 RDALSLLRERKDGYD-IVISDVNMPDM-DG--FKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLL 118 (584)
Q Consensus 51 ~eAL~~L~~~~~~pD-LVIlDi~MPdm-dG--lELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~ 118 (584)
.+..+.+.+. +++ +++.|+.--++ .| ++++++++....+|||+=..-.+.+.+.+++..||+..++
T Consensus 148 ~~~~~~~~~~--g~~~ii~~~~~~~g~~~g~~~~~i~~i~~~~~ipvia~GGi~~~~di~~~~~~Gadgv~i 217 (230)
T TIGR00007 148 EELAKRLEEL--GLEGIIYTDISRDGTLSGPNFELTKELVKAVNVPVIASGGVSSIDDLIALKKLGVYGVIV 217 (230)
T ss_pred HHHHHHHHhC--CCCEEEEEeecCCCCcCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 4444545443 356 77788854332 22 6788888766789998887788888888999999999875
No 126
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=67.70 E-value=76 Score=34.19 Aligned_cols=98 Identities=13% Similarity=0.156 Sum_probs=64.1
Q ss_pred EEEEEe----CCHHHHHHHHHHHHhCC-CeEE--EECCHHHHHHHHHhcCCCceEEEEecCC-----------CCCC--H
Q 007940 19 RVLVVD----DDLAWLKILEKMLKKCS-YEVT--TCGLARDALSLLRERKDGYDIVISDVNM-----------PDMD--G 78 (584)
Q Consensus 19 rVLIVD----Dd~~~r~~L~~lL~~~g-y~V~--~a~~~~eAL~~L~~~~~~pDLVIlDi~M-----------Pdmd--G 78 (584)
.+++|| +.....+.++.+-+..+ ..|. .+.+.++|..++.. ++|+|.+-+.= .+.. +
T Consensus 113 d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~a---Gad~i~vg~~~G~~~~t~~~~g~~~~~w~ 189 (326)
T PRK05458 113 EYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVGTPEAVRELENA---GADATKVGIGPGKVCITKIKTGFGTGGWQ 189 (326)
T ss_pred CEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecCCHHHHHHHHHc---CcCEEEECCCCCcccccccccCCCCCccH
Confidence 677775 33444555555555554 3333 36688888777653 37887644210 0112 5
Q ss_pred HHHHHHHhccCCCCEEEEEcCCChHHHHhhhhcCCceEEeC
Q 007940 79 FKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLK 119 (584)
Q Consensus 79 lELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~K 119 (584)
+..++.+....++|||.-..-.....+.+|+.+||+.+..=
T Consensus 190 l~ai~~~~~~~~ipVIAdGGI~~~~Di~KaLa~GA~aV~vG 230 (326)
T PRK05458 190 LAALRWCAKAARKPIIADGGIRTHGDIAKSIRFGATMVMIG 230 (326)
T ss_pred HHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHhCCCEEEec
Confidence 65677776556799998888888899999999999987654
No 127
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=67.13 E-value=25 Score=39.86 Aligned_cols=32 Identities=22% Similarity=0.202 Sum_probs=25.4
Q ss_pred cCCCCEEEEEcCCChHHHHhhhhcCCceEEeC
Q 007940 88 EMDLPVIMMSVDGETSRVMKGVQHGACDYLLK 119 (584)
Q Consensus 88 ~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~K 119 (584)
...+|||.=-+-.....+.+|+.+||+....=
T Consensus 342 ~~~v~vIadGGi~~~~di~kAla~GA~~Vm~G 373 (495)
T PTZ00314 342 ERGVPCIADGGIKNSGDICKALALGADCVMLG 373 (495)
T ss_pred hcCCeEEecCCCCCHHHHHHHHHcCCCEEEEC
Confidence 35688876656678889999999999987654
No 128
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=66.22 E-value=64 Score=36.44 Aligned_cols=107 Identities=11% Similarity=0.102 Sum_probs=67.4
Q ss_pred CHHHHHHHHHHHHhCC-CeEEEECC------HHHHHHHHHhcCCCceEEEEecCCCCCC-HHHHHHHHhcc-CCCCEEEE
Q 007940 26 DLAWLKILEKMLKKCS-YEVTTCGL------ARDALSLLRERKDGYDIVISDVNMPDMD-GFKLLEHVGLE-MDLPVIMM 96 (584)
Q Consensus 26 d~~~r~~L~~lL~~~g-y~V~~a~~------~~eAL~~L~~~~~~pDLVIlDi~MPdmd-GlELL~~Ir~~-~~iPVIvl 96 (584)
.|.....|...|++.| ++|..... .++..+.+.+. .||+|.+-..-+... ..++++.+++. ++++||+
T Consensus 21 pPlgl~~lAa~L~~~G~~~V~iiD~~~~~~~~~~~~~~l~~~--~pdvVgis~~t~~~~~a~~~~~~~k~~~P~~~iV~- 97 (497)
T TIGR02026 21 PPLWVAYIGGALLDAGYHDVTFLDAMTGPLTDEKLVERLRAH--CPDLVLITAITPAIYIACETLKFARERLPNAIIVL- 97 (497)
T ss_pred CCHHHHHHHHHHHhcCCcceEEecccccCCCHHHHHHHHHhc--CcCEEEEecCcccHHHHHHHHHHHHHHCCCCEEEE-
Confidence 5777889999999999 57775531 23334455543 499999987655443 45667777644 5665554
Q ss_pred EcCCChHHHHhhhh-cCCceEEeCCCCHHHHHHHHHHHHH
Q 007940 97 SVDGETSRVMKGVQ-HGACDYLLKPIRMKELRNIWQHVFR 135 (584)
Q Consensus 97 Sa~~d~~~~~~aL~-~GAdDYL~KP~~~~eL~~aI~~vlr 135 (584)
.+........+++. ....||++.--....+.+.++++..
T Consensus 98 GG~h~t~~~~~~l~~~p~vD~Vv~GEGE~~~~~Ll~~l~~ 137 (497)
T TIGR02026 98 GGIHPTFMFHQVLTEAPWIDFIVRGEGEETVVKLIAALEN 137 (497)
T ss_pred cCCCcCcCHHHHHhcCCCccEEEeCCcHHHHHHHHHHHHc
Confidence 43322222334453 3567899988777777777776543
No 129
>PF07688 KaiA: KaiA domain; InterPro: IPR011648 KaiA is a component of the kaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. The kaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting on the state of chromosome compaction. In the complex, KaiA enhances the phosphorylation status of kaiC. In contrast, the presence of kaiB in the complex decreases the phosphorylation status of kaiC, suggesting that kaiB acts by antagonising the interaction between kaiA and kaiC. The activity of KaiA activates kaiBC expression, while KaiC represses it. The overall fold of the KaiA monomer is that of a four-helix bundle, which forms a dimer in the known structure []. KaiA functions as a homodimer. Each monomer is composed of three functional domains: the N-terminal amplitude-amplifier domain, the central period-adjuster domain and the C-termianl clock-oscillator domain. The N-terminal domain of KaiA, from cyanobacteria, acts as a psuedo-receiver domain, but lacks the conserved aspartyl residue required for phosphotransfer in response regulators []. The C-terminal domain is responsible for dimer formation, binding to KaiC, enhancing KaiC phosphorylation and generating the circadian oscillations []. The KaiA protein from Anabaena sp. (strain PCC 7120) lacks the N-terminal CheY-like domain.; GO: 0006468 protein phosphorylation, 0007623 circadian rhythm; PDB: 1V2Z_A 1Q6B_B 1Q6A_A 1SV1_B 1SUY_B 1R5Q_A 1M2E_A 1R8J_B 1M2F_A.
Probab=66.01 E-value=32 Score=35.84 Aligned_cols=114 Identities=13% Similarity=0.196 Sum_probs=68.2
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc-CCCCEEEEE
Q 007940 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLE-MDLPVIMMS 97 (584)
Q Consensus 19 rVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~-~~iPVIvlS 97 (584)
.|-+.=.++.....+..+|....|.+..+.++.+.++.++.+++.+|++|+...... ..+...+... .-+|+|++.
T Consensus 2 sI~~~v~s~~Laqsl~~~L~~dRY~l~~~~s~~ef~~~le~~~e~iDCLvle~~~~~---~~~~~~L~e~g~LLPaVil~ 78 (283)
T PF07688_consen 2 SICLLVSSPALAQSLRQWLPGDRYELVQVDSPEEFLEFLEQHREQIDCLVLEQSPLL---PPLFNQLYEQGILLPAVILG 78 (283)
T ss_dssp EEEEE-S-HHHHHHHHHHT-STTEEEEEESSCHHHHHHHCCTTTT-SEEEEETTSTT---HHHHHHHHHCT----EEEES
T ss_pred eEEEEeCCHHHHHHHHHHcccCceEEEEcCcHHHHHHHHHhchhccCEEEEecCCCc---HHHHHHHHHcCccccEEEEe
Confidence 355666778889999999999889999999999999999987778999999875433 4566666544 467999886
Q ss_pred cCCChHHHHhhhhcCCceE-----EeCCCCHHHHHHHHHHHHHhcc
Q 007940 98 VDGETSRVMKGVQHGACDY-----LLKPIRMKELRNIWQHVFRKKI 138 (584)
Q Consensus 98 a~~d~~~~~~aL~~GAdDY-----L~KP~~~~eL~~aI~~vlrrk~ 138 (584)
.... ....-..|...| ..+.-..++|-..|.+++.+..
T Consensus 79 ~~~s---~~~~~~~~~~~YH~aEV~L~~~qL~ql~~~ID~AIsrFL 121 (283)
T PF07688_consen 79 SSES---ASTTSESGTVLYHSAEVHLPIDQLEQLSYNIDQAISRFL 121 (283)
T ss_dssp ---S-----TTS--SSGSSBTT-EEE-CCGTTCHHHHHHHHHHHHH
T ss_pred cCcc---cccCCCCCceeeehHheEccHHHHHHHHHHHHHHHHHHH
Confidence 5321 111112344444 3444445556555665555443
No 130
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=65.92 E-value=30 Score=34.54 Aligned_cols=58 Identities=19% Similarity=0.295 Sum_probs=45.5
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHHhCCC--eEE-EECCHHHHHHHHHhcC--CCceEEEEecC
Q 007940 15 PAGLRVLVVDDDLAWLKILEKMLKKCSY--EVT-TCGLARDALSLLRERK--DGYDIVISDVN 72 (584)
Q Consensus 15 p~gmrVLIVDDd~~~r~~L~~lL~~~gy--~V~-~a~~~~eAL~~L~~~~--~~pDLVIlDi~ 72 (584)
|.+-+|.-||-++...+..+..+++.|+ .|. ..+++.+.+..+.... ..||+|++|..
T Consensus 68 ~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~VFiDa~ 130 (205)
T PF01596_consen 68 PEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFVFIDAD 130 (205)
T ss_dssp TTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEEEEEST
T ss_pred cccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEEEEccc
Confidence 4456999999999999999999999885 333 5678888888776532 35999999984
No 131
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=64.01 E-value=46 Score=34.37 Aligned_cols=114 Identities=20% Similarity=0.184 Sum_probs=72.3
Q ss_pred CEEEEEeCCHH------HHHHHHHHHHhCCCeEEEECCHHHHHH-HHHhcCCCceEEEEecCCCCCCHH-----HHHHHH
Q 007940 18 LRVLVVDDDLA------WLKILEKMLKKCSYEVTTCGLARDALS-LLRERKDGYDIVISDVNMPDMDGF-----KLLEHV 85 (584)
Q Consensus 18 mrVLIVDDd~~------~r~~L~~lL~~~gy~V~~a~~~~eAL~-~L~~~~~~pDLVIlDi~MPdmdGl-----ELL~~I 85 (584)
+|+=|+-|+.. -.-.-.+.|-+.||.|..+.+..-.+. .|++.. -..+|-+.-|-.+|. ..++.|
T Consensus 101 iKlEVi~d~~tLlPD~~etl~Aae~Lv~eGF~VlPY~~dD~v~arrLee~G---caavMPl~aPIGSg~G~~n~~~l~ii 177 (262)
T COG2022 101 IKLEVIGDEKTLLPDPIETLKAAEQLVKEGFVVLPYTTDDPVLARRLEEAG---CAAVMPLGAPIGSGLGLQNPYNLEII 177 (262)
T ss_pred EEEEEecCCcccCCChHHHHHHHHHHHhCCCEEeeccCCCHHHHHHHHhcC---ceEeccccccccCCcCcCCHHHHHHH
Confidence 56666666432 222334556678999986655443333 333322 255666666655543 456666
Q ss_pred hccCCCCEEEEEcCCChHHHHhhhhcCCceEEeC-----CCCHHHHHHHHHHHH
Q 007940 86 GLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLK-----PIRMKELRNIWQHVF 134 (584)
Q Consensus 86 r~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~K-----P~~~~eL~~aI~~vl 134 (584)
.++.++|||+=.+-+....+..++++|+|..|.- --++-.+.++..++.
T Consensus 178 ie~a~VPviVDAGiG~pSdAa~aMElG~DaVL~NTAiA~A~DPv~MA~Af~~Av 231 (262)
T COG2022 178 IEEADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIARAKDPVAMARAFALAV 231 (262)
T ss_pred HHhCCCCEEEeCCCCChhHHHHHHhcccceeehhhHhhccCChHHHHHHHHHHH
Confidence 6677999999999999999999999999999864 223344444444443
No 132
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=63.83 E-value=46 Score=35.00 Aligned_cols=93 Identities=19% Similarity=0.190 Sum_probs=60.4
Q ss_pred EEEEeCCHHHHHHHHHHHHh----CC--CeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccC--CC
Q 007940 20 VLVVDDDLAWLKILEKMLKK----CS--YEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEM--DL 91 (584)
Q Consensus 20 VLIVDDd~~~r~~L~~lL~~----~g--y~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~--~i 91 (584)
|||-|.|-.+. .+...++. .+ ...+.+.+.+++.+++.. .+|+|++|=..|. +--++.+.++... +.
T Consensus 157 vLikdnHi~~~-~i~~av~~~r~~~~~~kIeVEv~~leea~~a~~a---gaDiI~LDn~~~e-~l~~~v~~l~~~~~~~~ 231 (278)
T PRK08385 157 ILIKDNHLALV-PLEEAIRRAKEFSVYKVVEVEVESLEDALKAAKA---GADIIMLDNMTPE-EIREVIEALKREGLRER 231 (278)
T ss_pred EEEccCHHHHH-HHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHc---CcCEEEECCCCHH-HHHHHHHHHHhcCcCCC
Confidence 78888886655 55555532 22 234467899999998864 3799999965443 2223333343221 23
Q ss_pred CEEEEEcCCChHHHHhhhhcCCceEE
Q 007940 92 PVIMMSVDGETSRVMKGVQHGACDYL 117 (584)
Q Consensus 92 PVIvlSa~~d~~~~~~aL~~GAdDYL 117 (584)
..|..|+.-+.+.+.+..+.|+|-+.
T Consensus 232 ~~leaSGGI~~~ni~~yA~tGvD~Is 257 (278)
T PRK08385 232 VKIEVSGGITPENIEEYAKLDVDVIS 257 (278)
T ss_pred EEEEEECCCCHHHHHHHHHcCCCEEE
Confidence 45677778888888888899987654
No 133
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=63.81 E-value=67 Score=32.25 Aligned_cols=92 Identities=18% Similarity=0.229 Sum_probs=54.9
Q ss_pred HHHHhCCC-eEEEECCHHHHHHHHHhc-CCCceEEEEecCCCCCCHHHHHHHHhcc-CCCCEEEEEcCCChHHHHhhhhc
Q 007940 35 KMLKKCSY-EVTTCGLARDALSLLRER-KDGYDIVISDVNMPDMDGFKLLEHVGLE-MDLPVIMMSVDGETSRVMKGVQH 111 (584)
Q Consensus 35 ~lL~~~gy-~V~~a~~~~eAL~~L~~~-~~~pDLVIlDi~MPdmdGlELL~~Ir~~-~~iPVIvlSa~~d~~~~~~aL~~ 111 (584)
+.|.+.+. -|....+.+++++.++.. ..++.+| .+.|-.-+.++.+++++.. +++. |=.-.--+.+.+.+++++
T Consensus 3 ~~l~~~~liaVlr~~~~e~a~~~~~al~~~Gi~~i--Eit~~t~~a~~~i~~l~~~~~~~~-vGAGTVl~~~~a~~a~~a 79 (204)
T TIGR01182 3 ELLREAKIVPVIRIDDVDDALPLAKALIEGGLRVL--EVTLRTPVALDAIRLLRKEVPDAL-IGAGTVLNPEQLRQAVDA 79 (204)
T ss_pred hHHhhCCEEEEEecCCHHHHHHHHHHHHHcCCCEE--EEeCCCccHHHHHHHHHHHCCCCE-EEEEeCCCHHHHHHHHHc
Confidence 34455552 344556677776655432 2335544 4444445688888888654 3322 222233577888999999
Q ss_pred CCceEEeCCCCHHHHHHHH
Q 007940 112 GACDYLLKPIRMKELRNIW 130 (584)
Q Consensus 112 GAdDYL~KP~~~~eL~~aI 130 (584)
||. |++-|....++.+..
T Consensus 80 GA~-FivsP~~~~~v~~~~ 97 (204)
T TIGR01182 80 GAQ-FIVSPGLTPELAKHA 97 (204)
T ss_pred CCC-EEECCCCCHHHHHHH
Confidence 987 667777666665543
No 134
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=63.25 E-value=60 Score=33.90 Aligned_cols=100 Identities=13% Similarity=0.172 Sum_probs=62.7
Q ss_pred HHHHHHHhCCCeEE--EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc--cCCCCEEEEEcCCChHHHHh
Q 007940 32 ILEKMLKKCSYEVT--TCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGL--EMDLPVIMMSVDGETSRVMK 107 (584)
Q Consensus 32 ~L~~lL~~~gy~V~--~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~--~~~iPVIvlSa~~d~~~~~~ 107 (584)
.|++.|+.-...+. .......+.+.+... +||.|++|.+--..+--++...++. ...++.++=....+...+.+
T Consensus 8 ~lk~~L~~G~~~~G~~~~~~sp~~~E~~a~~--GfD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~lVRvp~~~~~~i~r 85 (267)
T PRK10128 8 PFKEGLRKGEVQIGLWLSSTTSYMAEIAATS--GYDWLLIDGEHAPNTIQDLYHQLQAIAPYASQPVIRPVEGSKPLIKQ 85 (267)
T ss_pred HHHHHHHcCCceEEEEecCCCcHHHHHHHHc--CCCEEEEccccCCCCHHHHHHHHHHHHhcCCCeEEECCCCCHHHHHH
Confidence 35566655322221 222234556666653 4999999998877776666555542 23444444446677888999
Q ss_pred hhhcCCceEEeCCCC-HHHHHHHHHHH
Q 007940 108 GVQHGACDYLLKPIR-MKELRNIWQHV 133 (584)
Q Consensus 108 aL~~GAdDYL~KP~~-~~eL~~aI~~v 133 (584)
+|++||.+.+.--+. .++.+++++..
T Consensus 86 ~LD~GA~GIivP~V~saeeA~~~V~a~ 112 (267)
T PRK10128 86 VLDIGAQTLLIPMVDTAEQARQVVSAT 112 (267)
T ss_pred HhCCCCCeeEecCcCCHHHHHHHHHhc
Confidence 999999999886664 55555555443
No 135
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=63.05 E-value=21 Score=37.54 Aligned_cols=95 Identities=14% Similarity=0.207 Sum_probs=58.5
Q ss_pred EEEEEeCCHHHH-------HHHHHHHHhCC--CeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccC
Q 007940 19 RVLVVDDDLAWL-------KILEKMLKKCS--YEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEM 89 (584)
Q Consensus 19 rVLIVDDd~~~r-------~~L~~lL~~~g--y~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~ 89 (584)
.|||-|.|-... ..+..+=+..+ ...+.+.+.++|.+++.. ++|+|++| +|+-.+-.+.++.++...
T Consensus 158 ~ilikdnHi~~~g~~~~i~~av~~~r~~~~~~kIeVEv~tleea~ea~~~---GaDiI~lD-n~~~e~l~~~v~~l~~~~ 233 (277)
T TIGR01334 158 TLLVFANHRTFLNDNFDWGGAIGRLKQTAPERKITVEADTIEQALTVLQA---SPDILQLD-KFTPQQLHHLHERLKFFD 233 (277)
T ss_pred hheehHHHHHHhCCcccHHHHHHHHHHhCCCCCEEEECCCHHHHHHHHHc---CcCEEEEC-CCCHHHHHHHHHHHhccC
Confidence 366766665443 33333333322 234567889999998864 38999999 344334444455554323
Q ss_pred CCCEEEEEcCCChHHHHhhhhcCCceEE
Q 007940 90 DLPVIMMSVDGETSRVMKGVQHGACDYL 117 (584)
Q Consensus 90 ~iPVIvlSa~~d~~~~~~aL~~GAdDYL 117 (584)
.-..|-.|+--+.+.+.+....|++-+.
T Consensus 234 ~~~~leasGGI~~~ni~~ya~~GvD~is 261 (277)
T TIGR01334 234 HIPTLAAAGGINPENIADYIEAGIDLFI 261 (277)
T ss_pred CCEEEEEECCCCHHHHHHHHhcCCCEEE
Confidence 3336777888888888888888877544
No 136
>PLN02591 tryptophan synthase
Probab=62.00 E-value=21 Score=36.89 Aligned_cols=59 Identities=10% Similarity=0.240 Sum_probs=45.1
Q ss_pred CHHHHHHHHhccCCCCEEEEEcC------CChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHH
Q 007940 77 DGFKLLEHVGLEMDLPVIMMSVD------GETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFR 135 (584)
Q Consensus 77 dGlELL~~Ir~~~~iPVIvlSa~------~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlr 135 (584)
+.+++++++|....+|+|+|+=. +-.....+|.++|+++.|+-.+..+|.......+.+
T Consensus 65 ~~~~~~~~~r~~~~~p~ilm~Y~N~i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~~ 129 (250)
T PLN02591 65 SVISMLKEVAPQLSCPIVLFTYYNPILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEAAK 129 (250)
T ss_pred HHHHHHHHHhcCCCCCEEEEecccHHHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 35778888876678999988743 334557788899999999998888887776666544
No 137
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=61.69 E-value=51 Score=31.17 Aligned_cols=69 Identities=19% Similarity=0.175 Sum_probs=47.7
Q ss_pred ECCHHHHHHHHHhcCCCceEEEEecCCCC--------CCHHHHHHHHhccCCCCEEEEEcCCChHHHHhhhhcCCceEEe
Q 007940 47 CGLARDALSLLRERKDGYDIVISDVNMPD--------MDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLL 118 (584)
Q Consensus 47 a~~~~eAL~~L~~~~~~pDLVIlDi~MPd--------mdGlELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~ 118 (584)
+.+..++.++... .+|.|++...-|. ..|++.+++++....+||++..+- ..+.+.+++.+||+.+..
T Consensus 102 ~~t~~~~~~~~~~---g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~a~GGi-~~~~i~~~~~~Ga~~i~~ 177 (196)
T cd00564 102 THSLEEALRAEEL---GADYVGFGPVFPTPTKPGAGPPLGLELLREIAELVEIPVVAIGGI-TPENAAEVLAAGADGVAV 177 (196)
T ss_pred CCCHHHHHHHhhc---CCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhCCCCEEEECCC-CHHHHHHHHHcCCCEEEE
Confidence 4456666655442 3899988654332 346788888866677899887655 457788999999998754
Q ss_pred C
Q 007940 119 K 119 (584)
Q Consensus 119 K 119 (584)
=
T Consensus 178 g 178 (196)
T cd00564 178 I 178 (196)
T ss_pred e
Confidence 3
No 138
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=61.60 E-value=80 Score=35.35 Aligned_cols=100 Identities=10% Similarity=0.106 Sum_probs=54.9
Q ss_pred CCCEEEEEeCCHHH---HHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEec--CCCC-CCHHHHHHHH-hcc
Q 007940 16 AGLRVLVVDDDLAW---LKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDV--NMPD-MDGFKLLEHV-GLE 88 (584)
Q Consensus 16 ~gmrVLIVDDd~~~---r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi--~MPd-mdGlELL~~I-r~~ 88 (584)
.|.+|++++-|..- ...++...+..|..+..+....++.+.+.. ..+|+||+|. .++. .+-++-+..+ +..
T Consensus 251 ~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~--~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~ 328 (432)
T PRK12724 251 MGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLAR--DGSELILIDTAGYSHRNLEQLERMQSFYSCF 328 (432)
T ss_pred cCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHh--CCCCEEEEeCCCCCccCHHHHHHHHHHHHhh
Confidence 46789999988732 233445545556555555556666666654 3489999996 1221 1223333332 211
Q ss_pred ----CCCCEEEEEcCCChHHHHhhhh----cCCceEE
Q 007940 89 ----MDLPVIMMSVDGETSRVMKGVQ----HGACDYL 117 (584)
Q Consensus 89 ----~~iPVIvlSa~~d~~~~~~aL~----~GAdDYL 117 (584)
+.-.++++++....+.+.++++ .|.+..|
T Consensus 329 ~~~~~~e~~LVLsAt~~~~~~~~~~~~f~~~~~~glI 365 (432)
T PRK12724 329 GEKDSVENLLVLSSTSSYHHTLTVLKAYESLNYRRIL 365 (432)
T ss_pred cCCCCCeEEEEEeCCCCHHHHHHHHHHhcCCCCCEEE
Confidence 2234677777765544444443 4566654
No 139
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=60.78 E-value=24 Score=36.59 Aligned_cols=80 Identities=25% Similarity=0.279 Sum_probs=50.3
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhCCCeEEEEC-------CHHHHHHHHHhcCCCceEEEEecCCCCCCHHH----------
Q 007940 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTCG-------LARDALSLLRERKDGYDIVISDVNMPDMDGFK---------- 80 (584)
Q Consensus 18 mrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~-------~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlE---------- 80 (584)
|||||+-..-.+...|.+.|+..|++|.... +..+..+.+...+ ||+||--..+...+..|
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~~v~~~~r~~~dl~d~~~~~~~~~~~~--pd~Vin~aa~~~~~~ce~~p~~a~~iN 78 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGYEVIATSRSDLDLTDPEAVAKLLEAFK--PDVVINCAAYTNVDACEKNPEEAYAIN 78 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSEEEEEESTTCS-TTSHHHHHHHHHHH----SEEEE------HHHHHHSHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCCEEEEeCchhcCCCCHHHHHHHHHHhC--CCeEeccceeecHHhhhhChhhhHHHh
Confidence 7999999999999999999999888887663 4455555666544 99998877654433222
Q ss_pred -----HHHHHhccCCCCEEEEEcC
Q 007940 81 -----LLEHVGLEMDLPVIMMSVD 99 (584)
Q Consensus 81 -----LL~~Ir~~~~iPVIvlSa~ 99 (584)
.+.++-....+++|.+|+.
T Consensus 79 ~~~~~~la~~~~~~~~~li~~STd 102 (286)
T PF04321_consen 79 VDATKNLAEACKERGARLIHISTD 102 (286)
T ss_dssp THHHHHHHHHHHHCT-EEEEEEEG
T ss_pred hHHHHHHHHHHHHcCCcEEEeecc
Confidence 1222222457899999864
No 140
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=60.69 E-value=72 Score=32.85 Aligned_cols=80 Identities=11% Similarity=0.098 Sum_probs=55.2
Q ss_pred HHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc--CCCCEEEEEcCCChHHHHhhhhcCCceEEeCCC-CHHHHH
Q 007940 51 RDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLE--MDLPVIMMSVDGETSRVMKGVQHGACDYLLKPI-RMKELR 127 (584)
Q Consensus 51 ~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~--~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~KP~-~~~eL~ 127 (584)
..+.+.+... +||.|++|.+--.++--++...++.. ..++.++=....+...+.++++.||.+.+.-=+ +.++.+
T Consensus 23 p~~~e~~a~~--G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~~VRvp~~~~~~i~r~LD~Ga~gIivP~v~taeea~ 100 (249)
T TIGR03239 23 PITTEVLGLA--GFDWLLLDGEHAPNDVLTFIPQLMALKGSASAPVVRPPWNEPVIIKRLLDIGFYNFLIPFVESAEEAE 100 (249)
T ss_pred cHHHHHHHhc--CCCEEEEecccCCCCHHHHHHHHHHHhhcCCCcEEECCCCCHHHHHHHhcCCCCEEEecCcCCHHHHH
Confidence 4566666653 49999999998877766666655432 344444444667888999999999999887554 455555
Q ss_pred HHHHH
Q 007940 128 NIWQH 132 (584)
Q Consensus 128 ~aI~~ 132 (584)
++++.
T Consensus 101 ~~v~a 105 (249)
T TIGR03239 101 RAVAA 105 (249)
T ss_pred HHHHH
Confidence 55544
No 141
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=60.67 E-value=32 Score=35.10 Aligned_cols=57 Identities=9% Similarity=0.193 Sum_probs=40.0
Q ss_pred HHHHHHHHhccCCCCEEEEEcCCC------hHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHH
Q 007940 78 GFKLLEHVGLEMDLPVIMMSVDGE------TSRVMKGVQHGACDYLLKPIRMKELRNIWQHVF 134 (584)
Q Consensus 78 GlELL~~Ir~~~~iPVIvlSa~~d------~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vl 134 (584)
++++++.++....+|+++|+-... ...+.++.++|+++.+.-....+++...++.+.
T Consensus 64 ~~~~~~~vr~~~~~pv~lm~y~n~~~~~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~~ 126 (242)
T cd04724 64 VLELVKEIRKKNTIPIVLMGYYNPILQYGLERFLRDAKEAGVDGLIIPDLPPEEAEEFREAAK 126 (242)
T ss_pred HHHHHHHHhhcCCCCEEEEEecCHHHHhCHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHH
Confidence 455666776555889888876443 566778889999999996666666655555543
No 142
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=60.25 E-value=1.5e+02 Score=30.59 Aligned_cols=94 Identities=18% Similarity=0.087 Sum_probs=59.1
Q ss_pred EEEeC-CHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEecC---CCCCCHHHHHHHHhc-cC-CCCE
Q 007940 21 LVVDD-DLAWLKILEKMLKKCSYEVT-TCGLARDALSLLRERKDGYDIVISDVN---MPDMDGFKLLEHVGL-EM-DLPV 93 (584)
Q Consensus 21 LIVDD-d~~~r~~L~~lL~~~gy~V~-~a~~~~eAL~~L~~~~~~pDLVIlDi~---MPdmdGlELL~~Ir~-~~-~iPV 93 (584)
|++.+ .....+.+-...+..|..+. .+.+.+|+..++.. ++|+|-+.-. .-..+ ++..+++.. .+ ..++
T Consensus 139 Li~~~l~~~~l~~li~~a~~lGl~~lvevh~~~E~~~A~~~---gadiIgin~rdl~~~~~d-~~~~~~l~~~~p~~~~v 214 (260)
T PRK00278 139 LIVAALDDEQLKELLDYAHSLGLDVLVEVHDEEELERALKL---GAPLIGINNRNLKTFEVD-LETTERLAPLIPSDRLV 214 (260)
T ss_pred EEeccCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHc---CCCEEEECCCCcccccCC-HHHHHHHHHhCCCCCEE
Confidence 34444 34344455555566787654 67788888665542 3787765421 11222 555566533 23 3588
Q ss_pred EEEEcCCChHHHHhhhhcCCceEEe
Q 007940 94 IMMSVDGETSRVMKGVQHGACDYLL 118 (584)
Q Consensus 94 IvlSa~~d~~~~~~aL~~GAdDYL~ 118 (584)
|..++-...+.+.+++++||+.+++
T Consensus 215 IaegGI~t~ed~~~~~~~Gad~vlV 239 (260)
T PRK00278 215 VSESGIFTPEDLKRLAKAGADAVLV 239 (260)
T ss_pred EEEeCCCCHHHHHHHHHcCCCEEEE
Confidence 8888888899999999999999864
No 143
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=60.20 E-value=87 Score=34.77 Aligned_cols=101 Identities=18% Similarity=0.243 Sum_probs=60.5
Q ss_pred CCCEEEEEeC----CHHHHHHHHHHHHhCC-CeEE--EECCHHHHHHHHHhcCCCceEEEEecCC--------------C
Q 007940 16 AGLRVLVVDD----DLAWLKILEKMLKKCS-YEVT--TCGLARDALSLLRERKDGYDIVISDVNM--------------P 74 (584)
Q Consensus 16 ~gmrVLIVDD----d~~~r~~L~~lL~~~g-y~V~--~a~~~~eAL~~L~~~~~~pDLVIlDi~M--------------P 74 (584)
+|..|++||- .....+.++.+=+..+ ..++ -+.+.++|..++.. +.|.|.+-+.- |
T Consensus 164 aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~a---GaD~I~vG~g~Gs~c~tr~~~g~g~p 240 (404)
T PRK06843 164 AHVDILVIDSAHGHSTRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLISV---GADCLKVGIGPGSICTTRIVAGVGVP 240 (404)
T ss_pred cCCCEEEEECCCCCChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHHc---CCCEEEECCCCCcCCcceeecCCCCC
Confidence 4567777775 2333344444433332 2222 35677888777753 37888754311 2
Q ss_pred CCCHHHHHHHHhccCCCCEEEEEcCCChHHHHhhhhcCCceEEeC
Q 007940 75 DMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLK 119 (584)
Q Consensus 75 dmdGlELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~K 119 (584)
...-+..+..+.....+|||+=..-.....+.+|+.+||+...+=
T Consensus 241 ~ltai~~v~~~~~~~~vpVIAdGGI~~~~Di~KALalGA~aVmvG 285 (404)
T PRK06843 241 QITAICDVYEVCKNTNICIIADGGIRFSGDVVKAIAAGADSVMIG 285 (404)
T ss_pred hHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEc
Confidence 222232334433345789998777788999999999999987653
No 144
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=60.15 E-value=66 Score=33.30 Aligned_cols=100 Identities=11% Similarity=0.090 Sum_probs=62.9
Q ss_pred HHHHHHHhCCCeEE--EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc--CCCCEEEEEcCCChHHHHh
Q 007940 32 ILEKMLKKCSYEVT--TCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLE--MDLPVIMMSVDGETSRVMK 107 (584)
Q Consensus 32 ~L~~lL~~~gy~V~--~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~--~~iPVIvlSa~~d~~~~~~ 107 (584)
.|++.|+.-...+. .......+.+.+... +||.|++|.+--.++--++...++.. ..++.++=....+...+.+
T Consensus 9 ~lk~~l~~g~~~~g~~~~~~sp~~~e~~a~~--G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~~lVRvp~~~~~~i~r 86 (256)
T PRK10558 9 KFKAALAAKQVQIGCWSALANPITTEVLGLA--GFDWLVLDGEHAPNDVSTFIPQLMALKGSASAPVVRVPTNEPVIIKR 86 (256)
T ss_pred HHHHHHHcCCceEEEEEcCCCcHHHHHHHhc--CCCEEEEccccCCCCHHHHHHHHHHHhhcCCCcEEECCCCCHHHHHH
Confidence 45666665322222 222234556666653 49999999998877776666655432 3444444445678888999
Q ss_pred hhhcCCceEEeCCC-CHHHHHHHHHHH
Q 007940 108 GVQHGACDYLLKPI-RMKELRNIWQHV 133 (584)
Q Consensus 108 aL~~GAdDYL~KP~-~~~eL~~aI~~v 133 (584)
+++.||...+.-=+ +.++.+++++..
T Consensus 87 ~LD~Ga~giivP~v~tae~a~~~v~a~ 113 (256)
T PRK10558 87 LLDIGFYNFLIPFVETAEEARRAVAST 113 (256)
T ss_pred HhCCCCCeeeecCcCCHHHHHHHHHHc
Confidence 99999999877544 455655555443
No 145
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=59.55 E-value=96 Score=31.86 Aligned_cols=82 Identities=12% Similarity=0.062 Sum_probs=56.0
Q ss_pred HHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc--CCCCEEEEEcCCChHHHHhhhhcCCceEE-eCCCCHHHH
Q 007940 50 ARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLE--MDLPVIMMSVDGETSRVMKGVQHGACDYL-LKPIRMKEL 126 (584)
Q Consensus 50 ~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~--~~iPVIvlSa~~d~~~~~~aL~~GAdDYL-~KP~~~~eL 126 (584)
.....+.+... ++|.|++|++--..+.-++...++.. ....+++=....+...+..+++.||++.+ .|--+.+++
T Consensus 22 ~p~~~e~~~~~--g~D~v~iDlEH~~~~~~~~~~~~~a~~~~g~~~~VRv~~~~~~~i~~~Ld~Ga~gIivP~v~s~e~a 99 (249)
T TIGR02311 22 DPYAAEICAGA--GFDWLLIDGEHAPNDVRTILSQLQALAPYPSSPVVRPAIGDPVLIKQLLDIGAQTLLVPMIETAEQA 99 (249)
T ss_pred CcHHHHHHHhc--CCCEEEEeccCCCCCHHHHHHHHHHHHhcCCCcEEECCCCCHHHHHHHhCCCCCEEEecCcCCHHHH
Confidence 34566666653 49999999987777777776666432 23344433445566789999999999975 555667777
Q ss_pred HHHHHHH
Q 007940 127 RNIWQHV 133 (584)
Q Consensus 127 ~~aI~~v 133 (584)
+++++.+
T Consensus 100 ~~~v~~~ 106 (249)
T TIGR02311 100 EAAVAAT 106 (249)
T ss_pred HHHHHHc
Confidence 7666554
No 146
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=59.38 E-value=1.3e+02 Score=29.12 Aligned_cols=100 Identities=21% Similarity=0.087 Sum_probs=62.0
Q ss_pred CCCEEEEEeCCH--HHHHHHHHHHHhCCCeEE----EECCHHHHHHHHHhcCCCceEEEEecC-CC----CCCHHHHHHH
Q 007940 16 AGLRVLVVDDDL--AWLKILEKMLKKCSYEVT----TCGLARDALSLLRERKDGYDIVISDVN-MP----DMDGFKLLEH 84 (584)
Q Consensus 16 ~gmrVLIVDDd~--~~r~~L~~lL~~~gy~V~----~a~~~~eAL~~L~~~~~~pDLVIlDi~-MP----dmdGlELL~~ 84 (584)
.|...+++-+.. .....+.+.+++.|..+. .+.+..+++..+. ...|.|.+... .+ ...+.+.++.
T Consensus 76 aGad~i~~h~~~~~~~~~~~i~~~~~~g~~~~v~~~~~~t~~e~~~~~~---~~~d~v~~~~~~~~~~~~~~~~~~~i~~ 152 (202)
T cd04726 76 AGADIVTVLGAAPLSTIKKAVKAAKKYGKEVQVDLIGVEDPEKRAKLLK---LGVDIVILHRGIDAQAAGGWWPEDDLKK 152 (202)
T ss_pred cCCCEEEEEeeCCHHHHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHH---CCCCEEEEcCcccccccCCCCCHHHHHH
Confidence 455556654433 234455566666775544 4557778777443 23788877421 11 2356777777
Q ss_pred HhccCCCCEEEEEcCCChHHHHhhhhcCCceEEeC
Q 007940 85 VGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLK 119 (584)
Q Consensus 85 Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~K 119 (584)
++...++|+++.-+- ..+.+.++++.||+.++.-
T Consensus 153 ~~~~~~~~i~~~GGI-~~~~i~~~~~~Gad~vvvG 186 (202)
T cd04726 153 VKKLLGVKVAVAGGI-TPDTLPEFKKAGADIVIVG 186 (202)
T ss_pred HHhhcCCCEEEECCc-CHHHHHHHHhcCCCEEEEe
Confidence 765467787765444 5788899999999987653
No 147
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=58.98 E-value=1.3e+02 Score=32.39 Aligned_cols=114 Identities=12% Similarity=0.110 Sum_probs=70.7
Q ss_pred CEEEEEeCCHHHHHHHHH------HHHhCCCeE--EEECCHHHHHHHHHhcCCCceEEEEecCCC-----CCCHHHHHHH
Q 007940 18 LRVLVVDDDLAWLKILEK------MLKKCSYEV--TTCGLARDALSLLRERKDGYDIVISDVNMP-----DMDGFKLLEH 84 (584)
Q Consensus 18 mrVLIVDDd~~~r~~L~~------lL~~~gy~V--~~a~~~~eAL~~L~~~~~~pDLVIlDi~MP-----dmdGlELL~~ 84 (584)
+|+=|+-|+.....-+.. .|-+.||.| .++.+...|-++.. .. + +.++=+--| +..--+.++.
T Consensus 168 iKlEvi~e~~~llpd~~~~v~aa~~L~~~Gf~v~~yc~~d~~~a~~l~~-~g--~-~avmPl~~pIGsg~gv~~p~~i~~ 243 (326)
T PRK11840 168 VKLEVLGDAKTLYPDMVETLKATEILVKEGFQVMVYCSDDPIAAKRLED-AG--A-VAVMPLGAPIGSGLGIQNPYTIRL 243 (326)
T ss_pred EEEEEcCCCCCcccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHh-cC--C-EEEeeccccccCCCCCCCHHHHHH
Confidence 456566655443332222 233458887 35555655555443 22 4 444332222 1223456777
Q ss_pred HhccCCCCEEEEEcCCChHHHHhhhhcCCceEE-----eCCCCHHHHHHHHHHHHH
Q 007940 85 VGLEMDLPVIMMSVDGETSRVMKGVQHGACDYL-----LKPIRMKELRNIWQHVFR 135 (584)
Q Consensus 85 Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL-----~KP~~~~eL~~aI~~vlr 135 (584)
+.+..++|||+=.+-+..+.+..|+++||++.+ .|--++..+.++.+.+..
T Consensus 244 ~~e~~~vpVivdAGIg~~sda~~AmelGadgVL~nSaIa~a~dPv~Ma~A~~~av~ 299 (326)
T PRK11840 244 IVEGATVPVLVDAGVGTASDAAVAMELGCDGVLMNTAIAEAKNPVLMARAMKLAVE 299 (326)
T ss_pred HHHcCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEcceeccCCCHHHHHHHHHHHHH
Confidence 766678999988888999999999999999986 455566677777776654
No 148
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=58.84 E-value=1.2e+02 Score=33.41 Aligned_cols=105 Identities=19% Similarity=0.281 Sum_probs=58.9
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCCeEEEEC--CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCCEE
Q 007940 17 GLRVLVVDDDLAWLKILEKMLKKCSYEVTTCG--LARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVI 94 (584)
Q Consensus 17 gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~--~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVI 94 (584)
+++++||-|.+. ++.++++.+... |...+ ..++....+.. .|++++=-. .+.-|+.+++.+. ..+|||
T Consensus 290 ~~~l~ivG~G~~-~~~l~~~~~~~~--V~f~G~v~~~ev~~~~~~----aDv~V~pS~-~E~~g~~vlEAmA--~G~PVI 359 (465)
T PLN02871 290 GARLAFVGDGPY-REELEKMFAGTP--TVFTGMLQGDELSQAYAS----GDVFVMPSE-SETLGFVVLEAMA--SGVPVV 359 (465)
T ss_pred CcEEEEEeCChH-HHHHHHHhccCC--eEEeccCCHHHHHHHHHH----CCEEEECCc-ccccCcHHHHHHH--cCCCEE
Confidence 356666665442 344444444322 22222 22444455543 366664321 2223455666553 468998
Q ss_pred EEEcCCChHHHHhhhhc---CCceEEeCCCCHHHHHHHHHHHHH
Q 007940 95 MMSVDGETSRVMKGVQH---GACDYLLKPIRMKELRNIWQHVFR 135 (584)
Q Consensus 95 vlSa~~d~~~~~~aL~~---GAdDYL~KP~~~~eL~~aI~~vlr 135 (584)
.-. .+.. .+.+.. |-.+++..|-+.++|.+++.+++.
T Consensus 360 ~s~-~gg~---~eiv~~~~~~~~G~lv~~~d~~~la~~i~~ll~ 399 (465)
T PLN02871 360 AAR-AGGI---PDIIPPDQEGKTGFLYTPGDVDDCVEKLETLLA 399 (465)
T ss_pred EcC-CCCc---HhhhhcCCCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 543 3332 334444 888999999999999999988874
No 149
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=58.83 E-value=89 Score=32.70 Aligned_cols=106 Identities=25% Similarity=0.275 Sum_probs=58.1
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCCEEE
Q 007940 18 LRVLVVDDDLAWLKILEKMLKKCSY--EVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIM 95 (584)
Q Consensus 18 mrVLIVDDd~~~r~~L~~lL~~~gy--~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVIv 95 (584)
++++|+-+.+. +..+++.++..+. .+...+...+..+.+.. .|++++=-. .+.-|..+++.+. ..+|||+
T Consensus 230 ~~l~i~G~g~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----adi~v~pS~-~Eg~~~~~lEAma--~G~Pvv~ 301 (374)
T TIGR03088 230 LRLVIVGDGPA-RGACEQMVRAAGLAHLVWLPGERDDVPALMQA----LDLFVLPSL-AEGISNTILEAMA--SGLPVIA 301 (374)
T ss_pred eEEEEecCCch-HHHHHHHHHHcCCcceEEEcCCcCCHHHHHHh----cCEEEeccc-cccCchHHHHHHH--cCCCEEE
Confidence 45555554432 2344455444432 22222222333333332 355554211 1223556666653 5688875
Q ss_pred EEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHH
Q 007940 96 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFR 135 (584)
Q Consensus 96 lSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlr 135 (584)
|..+. ..+.+..|..+++..|-+.++|.+++..++.
T Consensus 302 -s~~~g---~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~ 337 (374)
T TIGR03088 302 -TAVGG---NPELVQHGVTGALVPPGDAVALARALQPYVS 337 (374)
T ss_pred -cCCCC---cHHHhcCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 44333 3445667888999999999999999988764
No 150
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=58.77 E-value=82 Score=34.10 Aligned_cols=111 Identities=16% Similarity=0.156 Sum_probs=55.8
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCCe---------------EEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHH
Q 007940 17 GLRVLVVDDDLAWLKILEKMLKKCSYE---------------VTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKL 81 (584)
Q Consensus 17 gmrVLIVDDd~~~r~~L~~lL~~~gy~---------------V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlEL 81 (584)
+.+++||-+.+.....+++.+++.|.. |..++.-.+....+.. .|++++--.....-|.-+
T Consensus 262 ~~~liivG~g~~r~~~l~~~~~~~gl~~~~~~~~~~~~~~~~v~l~~~~~el~~~y~~----aDi~~v~~S~~e~~g~~~ 337 (425)
T PRK05749 262 NLLLILVPRHPERFKEVEELLKKAGLSYVRRSQGEPPSADTDVLLGDTMGELGLLYAI----ADIAFVGGSLVKRGGHNP 337 (425)
T ss_pred CcEEEEcCCChhhHHHHHHHHHhCCCcEEEccCCCCCCCCCcEEEEecHHHHHHHHHh----CCEEEECCCcCCCCCCCH
Confidence 456666666665445566666555532 2222222233333332 466555222211123334
Q ss_pred HHHHhccCCCCEEEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHH
Q 007940 82 LEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFR 135 (584)
Q Consensus 82 L~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlr 135 (584)
++.+ ...+|||.-........+.+.+. ..+++..|-+.++|.+++.+++.
T Consensus 338 lEAm--a~G~PVI~g~~~~~~~e~~~~~~--~~g~~~~~~d~~~La~~l~~ll~ 387 (425)
T PRK05749 338 LEPA--AFGVPVISGPHTFNFKEIFERLL--QAGAAIQVEDAEDLAKAVTYLLT 387 (425)
T ss_pred HHHH--HhCCCEEECCCccCHHHHHHHHH--HCCCeEEECCHHHHHHHHHHHhc
Confidence 4443 24688885322233333333332 12467778889999999988764
No 151
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=58.29 E-value=34 Score=34.84 Aligned_cols=67 Identities=13% Similarity=0.130 Sum_probs=49.4
Q ss_pred HHHHHHHHhcCCCceEEEEecCCCCC-CH--HHHHHHHhccCCCCEEEEEcCCChHHHHhhhhcCCceEEe
Q 007940 51 RDALSLLRERKDGYDIVISDVNMPDM-DG--FKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLL 118 (584)
Q Consensus 51 ~eAL~~L~~~~~~pDLVIlDi~MPdm-dG--lELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~ 118 (584)
.+.++.+.+.. .-.+|++|+..-++ .| +++++.+.....+|||+-..-...+.+.++++.|++..++
T Consensus 151 ~~~~~~~~~~g-~~~ii~tdi~~dGt~~G~~~~li~~l~~~~~ipvi~~GGi~s~edi~~l~~~G~~~viv 220 (234)
T PRK13587 151 FSFVRQLSDIP-LGGIIYTDIAKDGKMSGPNFELTGQLVKATTIPVIASGGIRHQQDIQRLASLNVHAAII 220 (234)
T ss_pred HHHHHHHHHcC-CCEEEEecccCcCCCCccCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 34444444321 13699999976553 33 6778888766789999888788889999999999999876
No 152
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=57.50 E-value=21 Score=35.56 Aligned_cols=94 Identities=16% Similarity=0.196 Sum_probs=52.1
Q ss_pred HHHHHhCCC-eEEEECCHHHHHHHHHhc-CCCceEEEEecCCCCCCHHHHHHHHhcc-CCCCEEEEEcCCChHHHHhhhh
Q 007940 34 EKMLKKCSY-EVTTCGLARDALSLLRER-KDGYDIVISDVNMPDMDGFKLLEHVGLE-MDLPVIMMSVDGETSRVMKGVQ 110 (584)
Q Consensus 34 ~~lL~~~gy-~V~~a~~~~eAL~~L~~~-~~~pDLVIlDi~MPdmdGlELL~~Ir~~-~~iPVIvlSa~~d~~~~~~aL~ 110 (584)
.+.|++.+. -|....+.++++..++.. ..++. ++.+.|-.-+++++++.++.+ +++ +|=.-.--+.+.+.+|++
T Consensus 2 ~~~l~~~~iiaVir~~~~~~a~~~~~al~~gGi~--~iEiT~~t~~a~~~I~~l~~~~p~~-~vGAGTV~~~e~a~~a~~ 78 (196)
T PF01081_consen 2 EERLKENKIIAVIRGDDPEDAVPIAEALIEGGIR--AIEITLRTPNALEAIEALRKEFPDL-LVGAGTVLTAEQAEAAIA 78 (196)
T ss_dssp HHHHHHHSEEEEETTSSGGGHHHHHHHHHHTT----EEEEETTSTTHHHHHHHHHHHHTTS-EEEEES--SHHHHHHHHH
T ss_pred hHHHhhCCEEEEEEcCCHHHHHHHHHHHHHCCCC--EEEEecCCccHHHHHHHHHHHCCCC-eeEEEeccCHHHHHHHHH
Confidence 455665552 233344445555443321 12333 567777777899999988654 442 333334467788999999
Q ss_pred cCCceEEeCCCCHHHHHHHHH
Q 007940 111 HGACDYLLKPIRMKELRNIWQ 131 (584)
Q Consensus 111 ~GAdDYL~KP~~~~eL~~aI~ 131 (584)
+||. |++-|.-.+++.+..+
T Consensus 79 aGA~-FivSP~~~~~v~~~~~ 98 (196)
T PF01081_consen 79 AGAQ-FIVSPGFDPEVIEYAR 98 (196)
T ss_dssp HT-S-EEEESS--HHHHHHHH
T ss_pred cCCC-EEECCCCCHHHHHHHH
Confidence 9987 6666766666655433
No 153
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=57.47 E-value=1.9e+02 Score=29.00 Aligned_cols=66 Identities=20% Similarity=0.285 Sum_probs=43.3
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhccCCCCEEEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHH
Q 007940 64 YDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFR 135 (584)
Q Consensus 64 pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlr 135 (584)
.|++++--...+.-|+.+++.+. ..+|||. |.... ..+.+..|..+++.++.+.+++.+++..++.
T Consensus 263 ad~~i~ps~~~e~~~~~~~Ea~a--~G~Pvi~-~~~~~---~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~ 328 (359)
T cd03823 263 IDVLVVPSIWPENFPLVIREALA--AGVPVIA-SDIGG---MAELVRDGVNGLLFPPGDAEDLAAALERLID 328 (359)
T ss_pred CCEEEEcCcccCCCChHHHHHHH--CCCCEEE-CCCCC---HHHHhcCCCcEEEECCCCHHHHHHHHHHHHh
Confidence 36666432222334556676663 4688875 33322 3455667778999999999999999988875
No 154
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=56.90 E-value=83 Score=33.37 Aligned_cols=94 Identities=14% Similarity=0.076 Sum_probs=56.6
Q ss_pred EEEEeCCHHHH----HHHHHHHHhCC--CeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCCE
Q 007940 20 VLVVDDDLAWL----KILEKMLKKCS--YEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPV 93 (584)
Q Consensus 20 VLIVDDd~~~r----~~L~~lL~~~g--y~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPV 93 (584)
|||=|.|-... +.+++.-+..+ ...+.+.+.++|.+++.. ++|+|++| +|.-.+--+.++.++....-..
T Consensus 173 ilIkdNHi~~~G~i~~ai~~~r~~~~~~kIeVEv~tl~ea~eal~~---gaDiI~LD-nm~~e~vk~av~~~~~~~~~v~ 248 (289)
T PRK07896 173 ALIKDNHVAAAGSVVAALRAVRAAAPDLPCEVEVDSLEQLDEVLAE---GAELVLLD-NFPVWQTQEAVQRRDARAPTVL 248 (289)
T ss_pred eeecHHHHHHhCcHHHHHHHHHHhCCCCCEEEEcCCHHHHHHHHHc---CCCEEEeC-CCCHHHHHHHHHHHhccCCCEE
Confidence 56666554333 33333333333 245577899999999863 38999999 3432222223333332333346
Q ss_pred EEEEcCCChHHHHhhhhcCCceEE
Q 007940 94 IMMSVDGETSRVMKGVQHGACDYL 117 (584)
Q Consensus 94 IvlSa~~d~~~~~~aL~~GAdDYL 117 (584)
|..|+.-+.+.+.+....|+|-+.
T Consensus 249 ieaSGGI~~~ni~~yA~tGvD~Is 272 (289)
T PRK07896 249 LESSGGLTLDTAAAYAETGVDYLA 272 (289)
T ss_pred EEEECCCCHHHHHHHHhcCCCEEE
Confidence 777888888888888899987553
No 155
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=56.88 E-value=1.1e+02 Score=31.74 Aligned_cols=58 Identities=12% Similarity=0.153 Sum_probs=42.1
Q ss_pred HHHHHHHhccCCCCEEEEEcCCChHHHHhhhhcCCce------EEeCCCCHHHHHHHHHHHHHh
Q 007940 79 FKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACD------YLLKPIRMKELRNIWQHVFRK 136 (584)
Q Consensus 79 lELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdD------YL~KP~~~~eL~~aI~~vlrr 136 (584)
++.+++++...++|||..-.-.+.+.+.+++..||+. ++.+|.-..++.+-+.+.+.+
T Consensus 223 l~~v~~i~~~~~ipvi~~GGI~s~~da~~~l~~GAd~V~igr~~l~~p~~~~~i~~~l~~~~~~ 286 (300)
T TIGR01037 223 LRMVYDVYKMVDIPIIGVGGITSFEDALEFLMAGASAVQVGTAVYYRGFAFKKIIEGLIAFLKA 286 (300)
T ss_pred HHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHcCCCceeecHHHhcCchHHHHHHHHHHHHHHH
Confidence 3566677666679999888888889999999999885 456775555555555555543
No 156
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=56.82 E-value=1.1e+02 Score=34.09 Aligned_cols=110 Identities=14% Similarity=0.271 Sum_probs=60.1
Q ss_pred CEEEEEeC---CHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCC
Q 007940 18 LRVLVVDD---DLAWLKILEKMLKKCSY--EVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLP 92 (584)
Q Consensus 18 mrVLIVDD---d~~~r~~L~~lL~~~gy--~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iP 92 (584)
++++|+-+ ++...+.+++++++.+. .|...+ ..+..+.+.. .|++++--. .+.-|+.+++.+. ..+|
T Consensus 325 ~~l~IvG~g~~~~~~~~e~~~li~~l~l~~~V~f~G-~~~v~~~l~~----aDv~vlpS~-~Eg~p~~vlEAma--~G~P 396 (475)
T cd03813 325 AEGWVIGPTDEDPEYAEECRELVESLGLEDNVKFTG-FQNVKEYLPK----LDVLVLTSI-SEGQPLVILEAMA--AGIP 396 (475)
T ss_pred eEEEEECCCCcChHHHHHHHHHHHHhCCCCeEEEcC-CccHHHHHHh----CCEEEeCch-hhcCChHHHHHHH--cCCC
Confidence 45555533 23444555555554442 233333 2233333332 467666432 2233556666653 5688
Q ss_pred EEEEEcCCChHHHHhhhh---cCCceEEeCCCCHHHHHHHHHHHHHh
Q 007940 93 VIMMSVDGETSRVMKGVQ---HGACDYLLKPIRMKELRNIWQHVFRK 136 (584)
Q Consensus 93 VIvlSa~~d~~~~~~aL~---~GAdDYL~KP~~~~eL~~aI~~vlrr 136 (584)
||. |..+....+..-.. .|..+++..|.+.++|.+++.+++..
T Consensus 397 VVa-td~g~~~elv~~~~~~~~g~~G~lv~~~d~~~la~ai~~ll~~ 442 (475)
T cd03813 397 VVA-TDVGSCRELIEGADDEALGPAGEVVPPADPEALARAILRLLKD 442 (475)
T ss_pred EEE-CCCCChHHHhcCCcccccCCceEEECCCCHHHHHHHHHHHhcC
Confidence 875 44443333222211 27789999999999999999988753
No 157
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=56.68 E-value=88 Score=32.84 Aligned_cols=91 Identities=16% Similarity=0.187 Sum_probs=56.0
Q ss_pred EEEEeCCHHHHHHHHH----HHHhCCC---eEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHH-h---cc
Q 007940 20 VLVVDDDLAWLKILEK----MLKKCSY---EVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHV-G---LE 88 (584)
Q Consensus 20 VLIVDDd~~~r~~L~~----lL~~~gy---~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~I-r---~~ 88 (584)
|||=|.|-.....+.. +=++.++ ..+.+.+.++|++++.. ++|+|++|=. + ++.++++ + ..
T Consensus 155 vlikdnHi~~~g~i~~~v~~~k~~~p~~~~I~VEv~tleea~~A~~~---GaDiI~LDn~----~-~e~l~~~v~~~~~~ 226 (273)
T PRK05848 155 LMLKDTHLKHIKDLKEFIQHARKNIPFTAKIEIECESLEEAKNAMNA---GADIVMCDNM----S-VEEIKEVVAYRNAN 226 (273)
T ss_pred hCcCHHHHHHHCcHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHHHc---CCCEEEECCC----C-HHHHHHHHHHhhcc
Confidence 5555555444433333 3344443 33477899999998864 3899998842 2 3333332 2 11
Q ss_pred CCCCEEEEEcCCChHHHHhhhhcCCceEEe
Q 007940 89 MDLPVIMMSVDGETSRVMKGVQHGACDYLL 118 (584)
Q Consensus 89 ~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~ 118 (584)
..-..|..++.-+.+.+.+..+.|+|-+.+
T Consensus 227 ~~~~~ieAsGgIt~~ni~~ya~~GvD~Isv 256 (273)
T PRK05848 227 YPHVLLEASGNITLENINAYAKSGVDAISS 256 (273)
T ss_pred CCCeEEEEECCCCHHHHHHHHHcCCCEEEe
Confidence 122356677778899999999999986653
No 158
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=56.65 E-value=2.2e+02 Score=30.46 Aligned_cols=109 Identities=18% Similarity=0.243 Sum_probs=60.6
Q ss_pred CCEEEEEeCCH--------HHHHHHHHHHHhCCCeEEEECC--HHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh
Q 007940 17 GLRVLVVDDDL--------AWLKILEKMLKKCSYEVTTCGL--ARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVG 86 (584)
Q Consensus 17 gmrVLIVDDd~--------~~r~~L~~lL~~~gy~V~~a~~--~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir 86 (584)
.++++||-+.. ...+.++++.+..+-.|...+. ..+..+.+.. .|++++--...+.-|+-+++.+.
T Consensus 224 ~~~lvivG~g~~~~~~~~~~~~~~l~~~~~~l~~~v~~~G~~~~~~l~~~~~~----aDv~v~pS~~~E~f~~~~lEAma 299 (380)
T PRK15484 224 NLKLVVVGDPTASSKGEKAAYQKKVLEAAKRIGDRCIMLGGQPPEKMHNYYPL----ADLVVVPSQVEEAFCMVAVEAMA 299 (380)
T ss_pred CeEEEEEeCCccccccchhHHHHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHh----CCEEEeCCCCccccccHHHHHHH
Confidence 34566665422 2233444444444444443332 3344444443 46777533222333455555543
Q ss_pred ccCCCCEEEEEcCCChHHHHhhhhcCCceE-EeCCCCHHHHHHHHHHHHH
Q 007940 87 LEMDLPVIMMSVDGETSRVMKGVQHGACDY-LLKPIRMKELRNIWQHVFR 135 (584)
Q Consensus 87 ~~~~iPVIvlSa~~d~~~~~~aL~~GAdDY-L~KP~~~~eL~~aI~~vlr 135 (584)
..+|||. |..+. ..+.+..|..+| +..|.+.++|.+++.+++.
T Consensus 300 --~G~PVI~-s~~gg---~~Eiv~~~~~G~~l~~~~d~~~la~~I~~ll~ 343 (380)
T PRK15484 300 --AGKPVLA-STKGG---ITEFVLEGITGYHLAEPMTSDSIISDINRTLA 343 (380)
T ss_pred --cCCCEEE-eCCCC---cHhhcccCCceEEEeCCCCHHHHHHHHHHHHc
Confidence 5689875 44333 334566788888 5678999999999988874
No 159
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=56.38 E-value=1.6e+02 Score=29.07 Aligned_cols=77 Identities=16% Similarity=0.054 Sum_probs=51.2
Q ss_pred HhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEec---CCCCCCHHHHHHHHhcc--CCCCEEEEEcCCChHHHHhhhhc
Q 007940 38 KKCSYEVT-TCGLARDALSLLRERKDGYDIVISDV---NMPDMDGFKLLEHVGLE--MDLPVIMMSVDGETSRVMKGVQH 111 (584)
Q Consensus 38 ~~~gy~V~-~a~~~~eAL~~L~~~~~~pDLVIlDi---~MPdmdGlELL~~Ir~~--~~iPVIvlSa~~d~~~~~~aL~~ 111 (584)
...|..+. .+.+..++.++.+. .+|.|.+-- ... ..+++++++++.. ..+|||...+-...+.+.+++.+
T Consensus 118 ~~~g~~~~v~v~~~~e~~~~~~~---g~~~i~~t~~~~~~~-~~~~~~~~~l~~~~~~~~pvia~gGI~s~edi~~~~~~ 193 (217)
T cd00331 118 RELGMEVLVEVHDEEELERALAL---GAKIIGINNRDLKTF-EVDLNTTERLAPLIPKDVILVSESGISTPEDVKRLAEA 193 (217)
T ss_pred HHcCCeEEEEECCHHHHHHHHHc---CCCEEEEeCCCcccc-CcCHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHc
Confidence 44576543 45666666555542 367776541 111 1235777777544 46899988888888999999999
Q ss_pred CCceEEe
Q 007940 112 GACDYLL 118 (584)
Q Consensus 112 GAdDYL~ 118 (584)
||+.+++
T Consensus 194 Ga~gviv 200 (217)
T cd00331 194 GADAVLI 200 (217)
T ss_pred CCCEEEE
Confidence 9999874
No 160
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=56.11 E-value=31 Score=35.91 Aligned_cols=57 Identities=16% Similarity=0.207 Sum_probs=42.6
Q ss_pred HHHHHHHHhccCCCCEEEEEcC------CChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHH
Q 007940 78 GFKLLEHVGLEMDLPVIMMSVD------GETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVF 134 (584)
Q Consensus 78 GlELL~~Ir~~~~iPVIvlSa~------~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vl 134 (584)
.+++++++|....+|+|+|+=. +-...+.+|.++|+++.|+--...++....++.+.
T Consensus 79 ~~~~~~~~r~~~~~p~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~ 141 (263)
T CHL00200 79 ILSILSEVNGEIKAPIVIFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVCN 141 (263)
T ss_pred HHHHHHHHhcCCCCCEEEEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHH
Confidence 4667777776678998888743 44566889999999999998887777665555443
No 161
>PRK14098 glycogen synthase; Provisional
Probab=55.52 E-value=1.8e+02 Score=32.75 Aligned_cols=69 Identities=6% Similarity=0.053 Sum_probs=39.9
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhccCCCCEEEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHH
Q 007940 64 YDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFR 135 (584)
Q Consensus 64 pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlr 135 (584)
.|+.++=- .-..-|+..++.++ ..+|+|+...-+-.+.+.+....|..+|+..|.+.++|.+++.+++.
T Consensus 382 aDi~l~PS-~~E~~Gl~~lEAma--~G~ppVv~~~GGl~d~v~~~~~~~~~G~l~~~~d~~~la~ai~~~l~ 450 (489)
T PRK14098 382 LDMLLMPG-KIESCGMLQMFAMS--YGTIPVAYAGGGIVETIEEVSEDKGSGFIFHDYTPEALVAKLGEALA 450 (489)
T ss_pred CCEEEeCC-CCCCchHHHHHHHh--CCCCeEEecCCCCceeeecCCCCCCceeEeCCCCHHHHHHHHHHHHH
Confidence 45665321 11223555554442 45666654333333333333334678999999999999999988763
No 162
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=54.95 E-value=1.4e+02 Score=30.84 Aligned_cols=105 Identities=15% Similarity=0.149 Sum_probs=60.6
Q ss_pred CCCEEEEEeCCH-HHHHHHHHHHHhCCCeEE--EEC-CHHHHHHHHHhcCCCceEEEEecCCCCC------CHHHHHHHH
Q 007940 16 AGLRVLVVDDDL-AWLKILEKMLKKCSYEVT--TCG-LARDALSLLRERKDGYDIVISDVNMPDM------DGFKLLEHV 85 (584)
Q Consensus 16 ~gmrVLIVDDd~-~~r~~L~~lL~~~gy~V~--~a~-~~~eAL~~L~~~~~~pDLVIlDi~MPdm------dGlELL~~I 85 (584)
.|..-+|+=|.+ .....+...+++.|.... ++. +..+-+..+.+...++..++.=..-.+. +-.+.++++
T Consensus 114 aGvdgviipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfiy~vs~~G~TG~~~~~~~~~~~~i~~l 193 (256)
T TIGR00262 114 VGVDGVLVADLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQGFVYLVSRAGVTGARNRAASALNELVKRL 193 (256)
T ss_pred cCCCEEEECCCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCCCCEEEEECCCCCCCcccCChhHHHHHHHH
Confidence 344444444444 455666777778886533 222 3345555555444445554441111111 235667777
Q ss_pred hccCCCCEEEEEcCCChHHHHhhhhcCCceEEeCC
Q 007940 86 GLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKP 120 (584)
Q Consensus 86 r~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~KP 120 (584)
+...+.||++=.+-...+.+.++.++||+.+++--
T Consensus 194 r~~~~~pi~vgfGI~~~e~~~~~~~~GADgvVvGS 228 (256)
T TIGR00262 194 KAYSAKPVLVGFGISKPEQVKQAIDAGADGVIVGS 228 (256)
T ss_pred HhhcCCCEEEeCCCCCHHHHHHHHHcCCCEEEECH
Confidence 76667787653344568889999999999999874
No 163
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=54.92 E-value=75 Score=33.98 Aligned_cols=99 Identities=23% Similarity=0.313 Sum_probs=56.9
Q ss_pred CCCEEEEEeC----CHHHHHHHHHHHHhCC-CeEE--EECCHHHHHHHHHhcCCCceEEEEecCCCC------------C
Q 007940 16 AGLRVLVVDD----DLAWLKILEKMLKKCS-YEVT--TCGLARDALSLLRERKDGYDIVISDVNMPD------------M 76 (584)
Q Consensus 16 ~gmrVLIVDD----d~~~r~~L~~lL~~~g-y~V~--~a~~~~eAL~~L~~~~~~pDLVIlDi~MPd------------m 76 (584)
++.++++||- .....+.++.+-+..+ ..|. .+.+.+.|..+++. ..|.|.+.+ -|+ .
T Consensus 105 agv~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~a---GaD~I~vg~-g~G~~~~t~~~~g~g~ 180 (325)
T cd00381 105 AGVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIAGNVVTAEAARDLIDA---GADGVKVGI-GPGSICTTRIVTGVGV 180 (325)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHHHHHHCCCceEEECCCCCHHHHHHHHhc---CCCEEEECC-CCCcCcccceeCCCCC
Confidence 4567777763 3334444444444432 3333 34566777666542 478888632 111 1
Q ss_pred CHHHHHHHH---hccCCCCEEEEEcCCChHHHHhhhhcCCceEEe
Q 007940 77 DGFKLLEHV---GLEMDLPVIMMSVDGETSRVMKGVQHGACDYLL 118 (584)
Q Consensus 77 dGlELL~~I---r~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~ 118 (584)
.-+.++..+ .....+|||.--.-.+...+.+|+.+||+....
T Consensus 181 p~~~~i~~v~~~~~~~~vpVIA~GGI~~~~di~kAla~GA~~Vmi 225 (325)
T cd00381 181 PQATAVADVAAAARDYGVPVIADGGIRTSGDIVKALAAGADAVML 225 (325)
T ss_pred CHHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHcCCCEEEe
Confidence 123333333 222368988655566778899999999998765
No 164
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=54.85 E-value=50 Score=37.24 Aligned_cols=100 Identities=23% Similarity=0.291 Sum_probs=60.7
Q ss_pred CCCEEEEEeCC----HHHHHHHHHHHHhC-CCe--EEEECCHHHHHHHHHhcCCCceEEEEecCCCC------------C
Q 007940 16 AGLRVLVVDDD----LAWLKILEKMLKKC-SYE--VTTCGLARDALSLLRERKDGYDIVISDVNMPD------------M 76 (584)
Q Consensus 16 ~gmrVLIVDDd----~~~r~~L~~lL~~~-gy~--V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPd------------m 76 (584)
++.+++++|.. ..+...++.+-++. +.. +..+.+.++|..++.. +.|.|.+-+ -|+ .
T Consensus 239 agvdvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~g~v~t~e~a~~l~~a---Gad~i~vg~-g~gs~~~~r~~~~~g~ 314 (486)
T PRK05567 239 AGVDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIAGNVATAEAARALIEA---GADAVKVGI-GPGSICTTRIVAGVGV 314 (486)
T ss_pred hCCCEEEEECCCCcchhHHHHHHHHHhhCCCCCEEEeccCCHHHHHHHHHc---CCCEEEECC-CCCccccceeecCCCc
Confidence 46788888854 23444455554444 222 2345567777777653 368776532 122 1
Q ss_pred CHHHHHHHHhc---cCCCCEEEEEcCCChHHHHhhhhcCCceEEeC
Q 007940 77 DGFKLLEHVGL---EMDLPVIMMSVDGETSRVMKGVQHGACDYLLK 119 (584)
Q Consensus 77 dGlELL~~Ir~---~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~K 119 (584)
.-++++..+.. ...+|||.=..-.....+.+|+.+||+..++=
T Consensus 315 p~~~~~~~~~~~~~~~~~~viadGGi~~~~di~kAla~GA~~v~~G 360 (486)
T PRK05567 315 PQITAIADAAEAAKKYGIPVIADGGIRYSGDIAKALAAGASAVMLG 360 (486)
T ss_pred CHHHHHHHHHHHhccCCCeEEEcCCCCCHHHHHHHHHhCCCEEEEC
Confidence 23445544422 34688887667778899999999999987653
No 165
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=54.85 E-value=37 Score=35.18 Aligned_cols=57 Identities=12% Similarity=0.265 Sum_probs=42.5
Q ss_pred HHHHHHHHh-ccCCCCEEEEEcC------CChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHH
Q 007940 78 GFKLLEHVG-LEMDLPVIMMSVD------GETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVF 134 (584)
Q Consensus 78 GlELL~~Ir-~~~~iPVIvlSa~------~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vl 134 (584)
.++++++++ ...++|+|+|+=. +-.....++.++|+++.|+-.+..++....+..+.
T Consensus 76 ~~~~~~~~r~~~~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~~ 139 (258)
T PRK13111 76 VFELVREIREKDPTIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEELRAAAK 139 (258)
T ss_pred HHHHHHHHHhcCCCCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHH
Confidence 466777777 4568999988833 44566888999999999998777877776665553
No 166
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=54.62 E-value=40 Score=34.80 Aligned_cols=58 Identities=16% Similarity=0.209 Sum_probs=43.3
Q ss_pred CHHHHHHHHhcc-CCCCEEEEEcCCC------hHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHH
Q 007940 77 DGFKLLEHVGLE-MDLPVIMMSVDGE------TSRVMKGVQHGACDYLLKPIRMKELRNIWQHVF 134 (584)
Q Consensus 77 dGlELL~~Ir~~-~~iPVIvlSa~~d------~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vl 134 (584)
+.+++++.++.. ..+|+++|+-... ...+.++.++|++..+.-....++....+..+.
T Consensus 73 ~~~~~v~~ir~~~~~~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~ 137 (256)
T TIGR00262 73 KCFELLKKVRQKHPNIPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAAK 137 (256)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHHH
Confidence 356677888755 6889888876543 567888999999999998887777766555543
No 167
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=54.47 E-value=1.3e+02 Score=26.10 Aligned_cols=92 Identities=21% Similarity=0.156 Sum_probs=52.7
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCH--HHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCCE
Q 007940 17 GLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLA--RDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGL-EMDLPV 93 (584)
Q Consensus 17 gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~--~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~-~~~iPV 93 (584)
+.+|++||.++...+. ++..|+.+.. +++ .+.++.+.-. ..+.|++...-. ..-+.++..++. .+..++
T Consensus 21 ~~~vvvid~d~~~~~~----~~~~~~~~i~-gd~~~~~~l~~a~i~--~a~~vv~~~~~d-~~n~~~~~~~r~~~~~~~i 92 (116)
T PF02254_consen 21 GIDVVVIDRDPERVEE----LREEGVEVIY-GDATDPEVLERAGIE--KADAVVILTDDD-EENLLIALLARELNPDIRI 92 (116)
T ss_dssp TSEEEEEESSHHHHHH----HHHTTSEEEE-S-TTSHHHHHHTTGG--CESEEEEESSSH-HHHHHHHHHHHHHTTTSEE
T ss_pred CCEEEEEECCcHHHHH----HHhccccccc-ccchhhhHHhhcCcc--ccCEEEEccCCH-HHHHHHHHHHHHHCCCCeE
Confidence 4689999999877433 3445666554 444 3445544333 378888876422 334555666664 455667
Q ss_pred EEEEcCCChHHHHhhhhcCCceEEe
Q 007940 94 IMMSVDGETSRVMKGVQHGACDYLL 118 (584)
Q Consensus 94 IvlSa~~d~~~~~~aL~~GAdDYL~ 118 (584)
|+.... .......-++||+..+.
T Consensus 93 i~~~~~--~~~~~~l~~~g~d~vi~ 115 (116)
T PF02254_consen 93 IARVND--PENAELLRQAGADHVIS 115 (116)
T ss_dssp EEEESS--HHHHHHHHHTT-SEEEE
T ss_pred EEEECC--HHHHHHHHHCCcCEEEC
Confidence 665533 34445556788876653
No 168
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=54.24 E-value=72 Score=33.73 Aligned_cols=60 Identities=13% Similarity=0.092 Sum_probs=42.8
Q ss_pred CHHHHHHHHhccCCCCEE--EEEcCCChHHHHhhhhcCCceEEe-----CCCCHHHHHHHHHHHHHh
Q 007940 77 DGFKLLEHVGLEMDLPVI--MMSVDGETSRVMKGVQHGACDYLL-----KPIRMKELRNIWQHVFRK 136 (584)
Q Consensus 77 dGlELL~~Ir~~~~iPVI--vlSa~~d~~~~~~aL~~GAdDYL~-----KP~~~~eL~~aI~~vlrr 136 (584)
.|+++++.+.....+||| ....-...+.+..+++.||+.+++ +.-++.+....+...+.+
T Consensus 181 ~d~elLk~l~~~~~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~~a~dP~~~tk~f~~ai~~ 247 (283)
T cd04727 181 APYELVKETAKLGRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSENPEKRARAIVEAVTH 247 (283)
T ss_pred CCHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhhcCCCHHHHHHHHHHHHHh
Confidence 478899998766679997 555555889999999999999864 333455555555555443
No 169
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=53.81 E-value=2.2e+02 Score=27.99 Aligned_cols=108 Identities=18% Similarity=0.258 Sum_probs=59.9
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCCEE
Q 007940 17 GLRVLVVDDDLAWLKILEKMLKKCSY--EVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVI 94 (584)
Q Consensus 17 gmrVLIVDDd~~~r~~L~~lL~~~gy--~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVI 94 (584)
+++++|+.+... ...+...++..+. .|...+...+....+.. .|+++.-... +.-|..+++.+. ..+|||
T Consensus 209 ~~~l~i~G~~~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----ad~~i~ps~~-e~~~~~~~Ea~a--~G~Pvi 280 (348)
T cd03820 209 DWKLRIVGDGPE-REALEALIKELGLEDRVILLGFTKNIEEYYAK----ASIFVLTSRF-EGFPMVLLEAMA--FGLPVI 280 (348)
T ss_pred CeEEEEEeCCCC-HHHHHHHHHHcCCCCeEEEcCCcchHHHHHHh----CCEEEeCccc-cccCHHHHHHHH--cCCCEE
Confidence 345555554332 2233334444332 33333332344444443 4677765443 222556666653 568887
Q ss_pred EEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHH
Q 007940 95 MMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFR 135 (584)
Q Consensus 95 vlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlr 135 (584)
+........ .....|..+++.++.+.+++.+++.+++.
T Consensus 281 ~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~i~~ll~ 318 (348)
T cd03820 281 SFDCPTGPS---EIIEDGVNGLLVPNGDVEALAEALLRLME 318 (348)
T ss_pred EecCCCchH---hhhccCcceEEeCCCCHHHHHHHHHHHHc
Confidence 543223322 33455668899999999999999998864
No 170
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=52.82 E-value=89 Score=33.34 Aligned_cols=84 Identities=19% Similarity=0.258 Sum_probs=54.9
Q ss_pred HHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEec-C----CC-CC-CHHHHHHHHhccCCCCEEEEEcCCChHH
Q 007940 33 LEKMLKKCSYEVT-TCGLARDALSLLRERKDGYDIVISDV-N----MP-DM-DGFKLLEHVGLEMDLPVIMMSVDGETSR 104 (584)
Q Consensus 33 L~~lL~~~gy~V~-~a~~~~eAL~~L~~~~~~pDLVIlDi-~----MP-dm-dGlELL~~Ir~~~~iPVIvlSa~~d~~~ 104 (584)
+.+.++..|..|. .+++.++|..+++. .+|+|++-= + .. .. .-+.|+..++...++|||.--+-.+...
T Consensus 128 ~i~~l~~~gi~v~~~v~s~~~A~~a~~~---G~D~iv~qG~eAGGH~g~~~~~~~~L~~~v~~~~~iPViaAGGI~dg~~ 204 (330)
T PF03060_consen 128 VIERLHAAGIKVIPQVTSVREARKAAKA---GADAIVAQGPEAGGHRGFEVGSTFSLLPQVRDAVDIPVIAAGGIADGRG 204 (330)
T ss_dssp HHHHHHHTT-EEEEEESSHHHHHHHHHT---T-SEEEEE-TTSSEE---SSG-HHHHHHHHHHH-SS-EEEESS--SHHH
T ss_pred HHHHHHHcCCccccccCCHHHHHHhhhc---CCCEEEEeccccCCCCCccccceeeHHHHHhhhcCCcEEEecCcCCHHH
Confidence 3355667775544 88999999887764 389988752 1 11 22 2577777887777899998777788888
Q ss_pred HHhhhhcCCceEEeC
Q 007940 105 VMKGVQHGACDYLLK 119 (584)
Q Consensus 105 ~~~aL~~GAdDYL~K 119 (584)
+..++.+||+....=
T Consensus 205 iaaal~lGA~gV~~G 219 (330)
T PF03060_consen 205 IAAALALGADGVQMG 219 (330)
T ss_dssp HHHHHHCT-SEEEES
T ss_pred HHHHHHcCCCEeecC
Confidence 999999999998753
No 171
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=52.72 E-value=49 Score=32.28 Aligned_cols=74 Identities=16% Similarity=0.182 Sum_probs=46.0
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEec--CCCCCCH--HHHHHHHhccCCCCEEE
Q 007940 20 VLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDV--NMPDMDG--FKLLEHVGLEMDLPVIM 95 (584)
Q Consensus 20 VLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi--~MPdmdG--lELL~~Ir~~~~iPVIv 95 (584)
|||||..-..-..+.+.|+..|+.+.+..+-...++.+... .||.||+-= .-|..++ .+++++. ...+||+-
T Consensus 2 il~id~~dsft~~~~~~l~~~g~~v~v~~~~~~~~~~~~~~--~~d~iilsgGpg~p~~~~~~~~~i~~~--~~~~PvLG 77 (188)
T TIGR00566 2 VLMIDNYDSFTYNLVQYFCELGAEVVVKRNDSLTLQEIEAL--LPLLIVISPGPCTPNEAGISLEAIRHF--AGKLPILG 77 (188)
T ss_pred EEEEECCcCHHHHHHHHHHHcCCceEEEECCCCCHHHHHhc--CCCEEEEcCCCCChhhcchhHHHHHHh--ccCCCEEE
Confidence 89999999999999999999998877655332123333332 378666611 1122222 3344444 34789887
Q ss_pred EE
Q 007940 96 MS 97 (584)
Q Consensus 96 lS 97 (584)
++
T Consensus 78 IC 79 (188)
T TIGR00566 78 VC 79 (188)
T ss_pred EC
Confidence 75
No 172
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=52.59 E-value=1.2e+02 Score=26.54 Aligned_cols=71 Identities=20% Similarity=0.190 Sum_probs=48.1
Q ss_pred eCCHHHHHHHHHHHHhCCCeEEEEC---CHHHHHHHHHhcCCCceEEEEecCCCCC-CHHHHHHHHhc-cC-CCCEEEE
Q 007940 24 DDDLAWLKILEKMLKKCSYEVTTCG---LARDALSLLRERKDGYDIVISDVNMPDM-DGFKLLEHVGL-EM-DLPVIMM 96 (584)
Q Consensus 24 DDd~~~r~~L~~lL~~~gy~V~~a~---~~~eAL~~L~~~~~~pDLVIlDi~MPdm-dGlELL~~Ir~-~~-~iPVIvl 96 (584)
|-++.-...+..+|++.|+++.... ...+..+.+.+. .||+|.+...+... ..++.+..+++ .+ ++++++=
T Consensus 10 ~~h~lg~~~~~~~l~~~G~~v~~l~~~~~~~~~~~~i~~~--~pdiV~iS~~~~~~~~~~~~~~~~~~~~p~~~~ivvG 86 (125)
T cd02065 10 DVHDIGKNIVAIALRDNGFEVIDLGVDVPPEEIVEAAKEE--DADVVGLSALSTTHMEAMKLVIEALKELGIDIPVVVG 86 (125)
T ss_pred chhhHHHHHHHHHHHHCCCEEEEcCCCCCHHHHHHHHHHc--CCCEEEEecchHhHHHHHHHHHHHHHhcCCCCeEEEe
Confidence 5667777889999999999988554 345666666664 49999999877553 34555556543 34 5555543
No 173
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=52.17 E-value=1.4e+02 Score=30.76 Aligned_cols=65 Identities=18% Similarity=0.318 Sum_probs=42.8
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhccCCCCEEEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHH
Q 007940 64 YDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFR 135 (584)
Q Consensus 64 pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlr 135 (584)
.|++++=.. .+.-|+.+++.+. ..+|||. |..+. ..+.+..|..+|+.+|-+.+++.+++..++.
T Consensus 271 ~d~~v~ps~-~E~~~~~~~EAma--~g~PvI~-s~~~~---~~e~i~~~~~G~~~~~~~~~~l~~~i~~l~~ 335 (371)
T cd04962 271 ADLFLLPSE-KESFGLAALEAMA--CGVPVVA-SNAGG---IPEVVKHGETGFLVDVGDVEAMAEYALSLLE 335 (371)
T ss_pred cCEEEeCCC-cCCCccHHHHHHH--cCCCEEE-eCCCC---chhhhcCCCceEEcCCCCHHHHHHHHHHHHh
Confidence 356555332 2334566666653 4688886 33332 3456777888999999999999998887764
No 174
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=52.15 E-value=30 Score=26.01 Aligned_cols=45 Identities=31% Similarity=0.383 Sum_probs=34.8
Q ss_pred cccchhHHHHHHHHHHHhcccccCHHHHHhhhCCC-CCchHHHHhhhHHH
Q 007940 203 VVWSIDLHQKFVKAVNQIGFDKVGPKKILDLMNVP-WLTRENVASHLQKY 251 (584)
Q Consensus 203 vvws~eLhqkFv~av~~iG~s~~~Pk~Il~~m~v~-~Lt~~~V~sHlqky 251 (584)
..||.+-...|++++.+.|.. .-+.|.+.| + .-|..++.+|-++|
T Consensus 2 ~~Wt~eE~~~l~~~v~~~g~~--~W~~Ia~~~--~~~Rt~~qc~~~~~~~ 47 (48)
T PF00249_consen 2 GPWTEEEDEKLLEAVKKYGKD--NWKKIAKRM--PGGRTAKQCRSRYQNL 47 (48)
T ss_dssp -SS-HHHHHHHHHHHHHSTTT--HHHHHHHHH--SSSSTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCc--HHHHHHHHc--CCCCCHHHHHHHHHhh
Confidence 369999999999999998844 567888777 6 78888888887654
No 175
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=52.06 E-value=1.2e+02 Score=33.93 Aligned_cols=56 Identities=18% Similarity=0.150 Sum_probs=37.1
Q ss_pred CCCEEEEEeCCHH---HHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcC--CCceEEEEec
Q 007940 16 AGLRVLVVDDDLA---WLKILEKMLKKCSYEVTTCGLARDALSLLRERK--DGYDIVISDV 71 (584)
Q Consensus 16 ~gmrVLIVDDd~~---~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~--~~pDLVIlDi 71 (584)
.|.+|++++-|+. ..+.++...+..|..+..+.+..+..+.+.... ..+|+||+|.
T Consensus 268 ~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~~DvVLIDT 328 (436)
T PRK11889 268 KKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARVDYILIDT 328 (436)
T ss_pred cCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccCCCEEEEeC
Confidence 4678999988765 345555565666777776677665555554322 1489999997
No 176
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=51.00 E-value=1.8e+02 Score=28.67 Aligned_cols=75 Identities=20% Similarity=0.188 Sum_probs=56.6
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEEC-------CHHHHHHHHHhcCCCceEEEEecC-CCC-CCHHHHHHHHhccCC
Q 007940 20 VLVVDDDLAWLKILEKMLKKCSYEVTTCG-------LARDALSLLRERKDGYDIVISDVN-MPD-MDGFKLLEHVGLEMD 90 (584)
Q Consensus 20 VLIVDDd~~~r~~L~~lL~~~gy~V~~a~-------~~~eAL~~L~~~~~~pDLVIlDi~-MPd-mdGlELL~~Ir~~~~ 90 (584)
|||=|-|...++.++..-++.|.+++..+ ++++.++++.+....|=+|+.|-. .++ ..|-+.++.+...+.
T Consensus 3 IlvTDGD~~A~ravE~aa~~iGgRCIS~S~GNPT~lsG~elV~lIk~a~~DPV~VMfDD~G~~g~G~GE~Al~~v~~h~~ 82 (180)
T PF14097_consen 3 ILVTDGDEYAKRAVEIAAKNIGGRCISQSAGNPTPLSGEELVELIKQAPHDPVLVMFDDKGFIGEGPGEQALEYVANHPD 82 (180)
T ss_pred EEEECChHHHHHHHHHHHHHhCcEEEeccCCCCCcCCHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccHHHHHHHHcCCC
Confidence 56667788999999999999998888654 578999999987766777777653 343 357788888876776
Q ss_pred CCEE
Q 007940 91 LPVI 94 (584)
Q Consensus 91 iPVI 94 (584)
+-|+
T Consensus 83 IeVL 86 (180)
T PF14097_consen 83 IEVL 86 (180)
T ss_pred ceEE
Confidence 6543
No 177
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=50.97 E-value=83 Score=29.18 Aligned_cols=56 Identities=20% Similarity=0.073 Sum_probs=39.8
Q ss_pred CceEEEEecCCCCCCH-------HHHHHHHhccCCCCEEEEEcCCChHHHHhhhhcCCceEEe
Q 007940 63 GYDIVISDVNMPDMDG-------FKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLL 118 (584)
Q Consensus 63 ~pDLVIlDi~MPdmdG-------lELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~ 118 (584)
..|.|.++-..+...+ ...++.++....+||+....-...+.+.++++.||+.+.+
T Consensus 136 g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~~GGi~~~~~~~~~~~~Gad~v~v 198 (200)
T cd04722 136 GVDEVGLGNGGGGGGGRDAVPIADLLLILAKRGSKVPVIAGGGINDPEDAAEALALGADGVIV 198 (200)
T ss_pred CCCEEEEcCCcCCCCCccCchhHHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHhCCCEEEe
Confidence 3788888877664332 2444555556688999877777768888999999988754
No 178
>PRK12704 phosphodiesterase; Provisional
Probab=50.56 E-value=16 Score=41.78 Aligned_cols=46 Identities=11% Similarity=0.090 Sum_probs=40.0
Q ss_pred CEEEEEcCCChH--HHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHhc
Q 007940 92 PVIMMSVDGETS--RVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 137 (584)
Q Consensus 92 PVIvlSa~~d~~--~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrrk 137 (584)
.+|++|+..... .+..+++.|+.|+.+||++.+++...++..+...
T Consensus 251 ~~v~ls~~~~~rre~a~~~l~~l~~dg~i~P~~iee~~~~~~~~~~~~ 298 (520)
T PRK12704 251 EAVILSGFDPIRREIARLALEKLVQDGRIHPARIEEMVEKARKEVDEE 298 (520)
T ss_pred CeEEEecCChhhHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHH
Confidence 388899987766 8899999999999999999999999888777654
No 179
>PF13941 MutL: MutL protein
Probab=50.42 E-value=3.5e+02 Score=30.67 Aligned_cols=129 Identities=16% Similarity=0.222 Sum_probs=78.7
Q ss_pred CCCCEEEEEeCCHHHHH-HHHHHHHhCCCeEEEE---CCHHHHHHHHHhcCCCceEEEEecCCCCCC---HHHHHHHHh-
Q 007940 15 PAGLRVLVVDDDLAWLK-ILEKMLKKCSYEVTTC---GLARDALSLLRERKDGYDIVISDVNMPDMD---GFKLLEHVG- 86 (584)
Q Consensus 15 p~gmrVLIVDDd~~~r~-~L~~lL~~~gy~V~~a---~~~~eAL~~L~~~~~~pDLVIlDi~MPdmd---GlELL~~Ir- 86 (584)
..|+|++++-=.+.+-. .-++.-...|-.|... .-.++-++.+++.+ ||+||+-=.-.+.+ .+...+.|.
T Consensus 74 aGGLrmvv~Glv~~~Ta~AAk~AAlgAGA~V~~v~s~~l~~~~l~~i~~~~--PDiILLaGGtDgG~~~~il~nA~~La~ 151 (457)
T PF13941_consen 74 AGGLRMVVIGLVPDLTAEAAKRAALGAGARVLQVYSYELTEEDLEEIREIR--PDIILLAGGTDGGNKEVILHNAEMLAE 151 (457)
T ss_pred CCcceEEEEecCHHHHHHHHHHHHhcCCcEEEEEeccCCCHHHHHHHhccC--CCEEEEeCCccCCchHHHHHHHHHHHh
Confidence 45688888877665443 3333333456555432 23356677777654 99999944333333 244555563
Q ss_pred ccCCCCEEEEEcCCChHHHHhhhh-cCCceEEeCCC-------CHHHHHHHHHHHHHhcchhhhhhh
Q 007940 87 LEMDLPVIMMSVDGETSRVMKGVQ-HGACDYLLKPI-------RMKELRNIWQHVFRKKIHEVRDIE 145 (584)
Q Consensus 87 ~~~~iPVIvlSa~~d~~~~~~aL~-~GAdDYL~KP~-------~~~eL~~aI~~vlrrk~~~~~~~~ 145 (584)
....+|||+--.....+.+.+.|. .|..-|++--+ ..+-.+.+|+.++.+++-..+...
T Consensus 152 ~~~~~pVIyAGN~~a~~~v~~il~~~~~~~~~~~NV~P~i~~ln~~paR~~I~~~F~~~Ii~akGl~ 218 (457)
T PF13941_consen 152 ANLRIPVIYAGNKAAQDEVEEILEKAGKEVVITENVMPKIDVLNVEPAREAIREVFLRHIIQAKGLS 218 (457)
T ss_pred CCCCCcEEEECCHHHHHHHHHHHHhCCCCEEEeCCCCCCCCCcChHHHHHHHHHHHHHHHhcCCCHH
Confidence 345789887766666777788887 56565665543 455677888888877665444333
No 180
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=50.05 E-value=31 Score=34.25 Aligned_cols=53 Identities=34% Similarity=0.357 Sum_probs=38.5
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhCC--CeEE-EECCHHHHHHHHHhcCCCceEEEEec
Q 007940 18 LRVLVVDDDLAWLKILEKMLKKCS--YEVT-TCGLARDALSLLRERKDGYDIVISDV 71 (584)
Q Consensus 18 mrVLIVDDd~~~r~~L~~lL~~~g--y~V~-~a~~~~eAL~~L~~~~~~pDLVIlDi 71 (584)
.++++||-+......|++-++..+ -.+. ...++..++..+... ..+|+|++|-
T Consensus 67 ~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~-~~FDlVflDP 122 (187)
T COG0742 67 ARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTR-EPFDLVFLDP 122 (187)
T ss_pred ceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCC-CcccEEEeCC
Confidence 589999999999999999998877 2232 344555555555432 2499999996
No 181
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=50.00 E-value=1.5e+02 Score=30.87 Aligned_cols=57 Identities=14% Similarity=0.240 Sum_probs=40.9
Q ss_pred HHHHHHHhccCCCCEEEEEcCCChHHHHhhhhcCCceE------EeCCCCHHHHHHHHHHHHH
Q 007940 79 FKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDY------LLKPIRMKELRNIWQHVFR 135 (584)
Q Consensus 79 lELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdDY------L~KP~~~~eL~~aI~~vlr 135 (584)
++.+++++...++|||....-.+.+.+.+++.+||+.. +..|.-...+++-+.+.+.
T Consensus 223 l~~v~~i~~~~~ipvi~~GGI~~~~da~~~l~aGAd~V~igr~ll~~P~~~~~i~~~l~~~~~ 285 (301)
T PRK07259 223 LRMVYQVYQAVDIPIIGMGGISSAEDAIEFIMAGASAVQVGTANFYDPYAFPKIIEGLEAYLD 285 (301)
T ss_pred HHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHcCCCceeEcHHHhcCcHHHHHHHHHHHHHHH
Confidence 56777777666899999888888999999999998643 2345555555555555444
No 182
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=49.87 E-value=1.6e+02 Score=31.94 Aligned_cols=104 Identities=11% Similarity=0.158 Sum_probs=60.9
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHHhC--CCeEE-EECCHHHHHHHHHhcCCCceE-EEEecCCCCCCHHHHHHHHhccCCC
Q 007940 16 AGLRVLVVDDDLAWLKILEKMLKKC--SYEVT-TCGLARDALSLLRERKDGYDI-VISDVNMPDMDGFKLLEHVGLEMDL 91 (584)
Q Consensus 16 ~gmrVLIVDDd~~~r~~L~~lL~~~--gy~V~-~a~~~~eAL~~L~~~~~~pDL-VIlDi~MPdmdGlELL~~Ir~~~~i 91 (584)
..+||.||-- .. .+.....+... +++++ +++...+..+.+.+. +.+ +..|+ -+++ ...++
T Consensus 2 ~~~rVgViG~-~~-G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~---~gi~~y~~~-------eell----~d~Di 65 (343)
T TIGR01761 2 DVQSVVVCGT-RF-GQFYLAAFAAAPERFELAGILAQGSERSRALAHR---LGVPLYCEV-------EELP----DDIDI 65 (343)
T ss_pred CCcEEEEEeH-HH-HHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHH---hCCCccCCH-------HHHh----cCCCE
Confidence 3579999997 44 44444445443 46665 444444444444432 222 11221 1222 23455
Q ss_pred CEEEEEc----CCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHH
Q 007940 92 PVIMMSV----DGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFR 135 (584)
Q Consensus 92 PVIvlSa----~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlr 135 (584)
-+|.+.+ ....+.+.+|+++|..=++-||+..++..+.++.+-+
T Consensus 66 ~~V~ipt~~P~~~H~e~a~~aL~aGkHVL~EKPla~~Ea~el~~~A~~ 113 (343)
T TIGR01761 66 ACVVVRSAIVGGQGSALARALLARGIHVLQEHPLHPRDIQDLLRLAER 113 (343)
T ss_pred EEEEeCCCCCCccHHHHHHHHHhCCCeEEEcCCCCHHHHHHHHHHHHH
Confidence 4555522 3557889999999999999999997777776665544
No 183
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=49.72 E-value=35 Score=32.07 Aligned_cols=43 Identities=16% Similarity=0.343 Sum_probs=25.1
Q ss_pred HHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCCEEEEEcC
Q 007940 51 RDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVD 99 (584)
Q Consensus 51 ~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVIvlSa~ 99 (584)
.++++.++.. .+|+||+|. ++..-. ....+ ...+..+|+++..
T Consensus 81 ~~~~~~~~~~--~~D~iiIDt--aG~~~~-~~~~~-~~Ad~~ivv~tpe 123 (148)
T cd03114 81 PEVIRVLDAA--GFDVIIVET--VGVGQS-EVDIA-SMADTTVVVMAPG 123 (148)
T ss_pred HHHHHHHHhc--CCCEEEEEC--CccChh-hhhHH-HhCCEEEEEECCC
Confidence 4566665543 499999998 665422 22222 2345566666655
No 184
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=49.57 E-value=67 Score=31.91 Aligned_cols=66 Identities=14% Similarity=0.216 Sum_probs=47.6
Q ss_pred HHHHHHHHhcCCCce-EEEEecCCCCC-CH--HHHHHHHhccCCCCEEEEEcCCChHHHHhhhhcC-CceEEe
Q 007940 51 RDALSLLRERKDGYD-IVISDVNMPDM-DG--FKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHG-ACDYLL 118 (584)
Q Consensus 51 ~eAL~~L~~~~~~pD-LVIlDi~MPdm-dG--lELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~G-AdDYL~ 118 (584)
.+..+.+.+. +++ ++++++..-++ .| +++++++....++|||.-..-.+.+.+.++++.| |++.++
T Consensus 149 ~e~~~~~~~~--g~~~ii~~~~~~~g~~~G~d~~~i~~l~~~~~ipvia~GGi~~~~di~~~~~~g~~~gv~v 219 (233)
T PRK00748 149 EDLAKRFEDA--GVKAIIYTDISRDGTLSGPNVEATRELAAAVPIPVIASGGVSSLDDIKALKGLGAVEGVIV 219 (233)
T ss_pred HHHHHHHHhc--CCCEEEEeeecCcCCcCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCccEEEE
Confidence 4555555543 255 78888764332 34 6888888766679999888788889999999988 888775
No 185
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=49.15 E-value=1.1e+02 Score=30.81 Aligned_cols=95 Identities=16% Similarity=0.151 Sum_probs=61.2
Q ss_pred HHHHHhCC-CeEEEECCHHHHHHHHHhc-CCCceEEEEecCCCCCCHHHHHHHHhccCC-CCEEEE--EcCCChHHHHhh
Q 007940 34 EKMLKKCS-YEVTTCGLARDALSLLRER-KDGYDIVISDVNMPDMDGFKLLEHVGLEMD-LPVIMM--SVDGETSRVMKG 108 (584)
Q Consensus 34 ~~lL~~~g-y~V~~a~~~~eAL~~L~~~-~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~-iPVIvl--Sa~~d~~~~~~a 108 (584)
.+.|.+.+ .-|....+.++++..++.. ..+ +=++.+.|-.-++++.++.++.... -|=+++ -.-.+.+.+.++
T Consensus 7 ~~~l~~~~vi~vir~~~~~~a~~~~~al~~~G--i~~iEit~~~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a 84 (213)
T PRK06552 7 LTKLKANGVVAVVRGESKEEALKISLAVIKGG--IKAIEVTYTNPFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLA 84 (213)
T ss_pred HHHHHHCCEEEEEECCCHHHHHHHHHHHHHCC--CCEEEEECCCccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHH
Confidence 35566666 3455667777777766542 122 4466777777789999999965432 232223 233577888999
Q ss_pred hhcCCceEEeCCCCHHHHHHHHH
Q 007940 109 VQHGACDYLLKPIRMKELRNIWQ 131 (584)
Q Consensus 109 L~~GAdDYL~KP~~~~eL~~aI~ 131 (584)
+++||. |++-|.-..++.+..+
T Consensus 85 ~~aGA~-FivsP~~~~~v~~~~~ 106 (213)
T PRK06552 85 ILAGAQ-FIVSPSFNRETAKICN 106 (213)
T ss_pred HHcCCC-EEECCCCCHHHHHHHH
Confidence 999987 7777877777766543
No 186
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=48.67 E-value=1.3e+02 Score=33.34 Aligned_cols=91 Identities=11% Similarity=0.104 Sum_probs=51.9
Q ss_pred CCCEEEEEeCCHHH---HHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecC-CCCC--CHHHHHHHH-h-c
Q 007940 16 AGLRVLVVDDDLAW---LKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVN-MPDM--DGFKLLEHV-G-L 87 (584)
Q Consensus 16 ~gmrVLIVDDd~~~---r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~-MPdm--dGlELL~~I-r-~ 87 (584)
.+.+|++|+-|+.- .+.+..+-+..+..+..+.+..+....+.... .+|+||+|.- +... ..++.++.+ . .
T Consensus 250 ~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~-~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~ 328 (424)
T PRK05703 250 GKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLR-DCDVILIDTAGRSQRDKRLIEELKALIEFS 328 (424)
T ss_pred CCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhC-CCCEEEEeCCCCCCCCHHHHHHHHHHHhcc
Confidence 36799999988742 33455555556666666677776666666543 4899999973 1111 233334443 3 1
Q ss_pred cCCC-CEEEEEcCCChHHHHh
Q 007940 88 EMDL-PVIMMSVDGETSRVMK 107 (584)
Q Consensus 88 ~~~i-PVIvlSa~~d~~~~~~ 107 (584)
...+ .++++++......+.+
T Consensus 329 ~~~~~~~LVl~a~~~~~~l~~ 349 (424)
T PRK05703 329 GEPIDVYLVLSATTKYEDLKD 349 (424)
T ss_pred CCCCeEEEEEECCCCHHHHHH
Confidence 1222 2566776655444433
No 187
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=48.46 E-value=1e+02 Score=29.65 Aligned_cols=69 Identities=14% Similarity=0.200 Sum_probs=47.3
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEecCCCC--------CCHHHHHHHHhcc-CCCCEEEEEcCCChHHHHhhhhcCCceE
Q 007940 46 TCGLARDALSLLRERKDGYDIVISDVNMPD--------MDGFKLLEHVGLE-MDLPVIMMSVDGETSRVMKGVQHGACDY 116 (584)
Q Consensus 46 ~a~~~~eAL~~L~~~~~~pDLVIlDi~MPd--------mdGlELL~~Ir~~-~~iPVIvlSa~~d~~~~~~aL~~GAdDY 116 (584)
.+.+..++.++.+ ..+|.|.++-..|. ..|++.++.+... +.+||+++-+- ..+.+.+++..|++++
T Consensus 102 s~h~~~e~~~a~~---~g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~~~~pv~a~GGI-~~~~~~~~~~~G~~gv 177 (196)
T TIGR00693 102 STHNLEELAEAEA---EGADYIGFGPIFPTPTKKDPAPPAGVELLREIAATSIDIPIVAIGGI-TLENAAEVLAAGADGV 177 (196)
T ss_pred eCCCHHHHHHHhH---cCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCc-CHHHHHHHHHcCCCEE
Confidence 5666677665443 24899988765442 2378888888543 46898877544 5677888899999887
Q ss_pred Ee
Q 007940 117 LL 118 (584)
Q Consensus 117 L~ 118 (584)
..
T Consensus 178 a~ 179 (196)
T TIGR00693 178 AV 179 (196)
T ss_pred EE
Confidence 54
No 188
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=48.22 E-value=1.1e+02 Score=29.50 Aligned_cols=76 Identities=16% Similarity=0.277 Sum_probs=49.4
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHHhCC--CeEEEECC-------HHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh
Q 007940 16 AGLRVLVVDDDLAWLKILEKMLKKCS--YEVTTCGL-------ARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVG 86 (584)
Q Consensus 16 ~gmrVLIVDDd~~~r~~L~~lL~~~g--y~V~~a~~-------~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir 86 (584)
.+.+|.++-..+...+.+.+.|++.- ..++...+ ..+.++.+... .||+|++-+.+|.-.- ++.+.+
T Consensus 45 ~~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I~~~--~pdiv~vglG~PkQE~--~~~~~~ 120 (171)
T cd06533 45 KGLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERINAS--GADILFVGLGAPKQEL--WIARHK 120 (171)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHHHHHc--CCCEEEEECCCCHHHH--HHHHHH
Confidence 46899999999999999888887653 33333211 12335566654 4999999999997653 344444
Q ss_pred ccCCCCEEE
Q 007940 87 LEMDLPVIM 95 (584)
Q Consensus 87 ~~~~iPVIv 95 (584)
...+.+|++
T Consensus 121 ~~l~~~v~~ 129 (171)
T cd06533 121 DRLPVPVAI 129 (171)
T ss_pred HHCCCCEEE
Confidence 344455554
No 189
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=47.96 E-value=2.1e+02 Score=26.08 Aligned_cols=109 Identities=22% Similarity=0.333 Sum_probs=65.7
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCC--eEEEECCH--HHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCC
Q 007940 17 GLRVLVVDDDLAWLKILEKMLKKCSY--EVTTCGLA--RDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLP 92 (584)
Q Consensus 17 gmrVLIVDDd~~~r~~L~~lL~~~gy--~V~~a~~~--~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iP 92 (584)
.++++|+.+.... ..+....+..+. .+...+.. .+..++++. .|++++=-.. +.-|..+++.+. ..+|
T Consensus 47 ~~~l~i~G~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~----~di~v~~s~~-e~~~~~~~Ea~~--~g~p 118 (172)
T PF00534_consen 47 NYKLVIVGDGEYK-KELKNLIEKLNLKENIIFLGYVPDDELDELYKS----SDIFVSPSRN-EGFGLSLLEAMA--CGCP 118 (172)
T ss_dssp TEEEEEESHCCHH-HHHHHHHHHTTCGTTEEEEESHSHHHHHHHHHH----TSEEEE-BSS-BSS-HHHHHHHH--TT-E
T ss_pred CeEEEEEcccccc-ccccccccccccccccccccccccccccccccc----ceeccccccc-cccccccccccc--cccc
Confidence 4577777733322 234444444442 34444433 355556654 4677765544 445666777663 4677
Q ss_pred EEEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHhc
Q 007940 93 VIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 137 (584)
Q Consensus 93 VIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrrk 137 (584)
||+ +..+ ...+.+..+..+++..+.+.+++..++.+++...
T Consensus 119 vI~-~~~~---~~~e~~~~~~~g~~~~~~~~~~l~~~i~~~l~~~ 159 (172)
T PF00534_consen 119 VIA-SDIG---GNNEIINDGVNGFLFDPNDIEELADAIEKLLNDP 159 (172)
T ss_dssp EEE-ESST---HHHHHSGTTTSEEEESTTSHHHHHHHHHHHHHHH
T ss_pred eee-cccc---CCceeeccccceEEeCCCCHHHHHHHHHHHHCCH
Confidence 774 4333 3456677788999999999999999999988653
No 190
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=47.76 E-value=68 Score=34.80 Aligned_cols=66 Identities=14% Similarity=-0.007 Sum_probs=44.1
Q ss_pred HHHHHhcCCCceEEEEecCCCCCC-HHHHHHHHhccCCCCEEEEEcCCChHHHHhhhhcCCceEEeC
Q 007940 54 LSLLRERKDGYDIVISDVNMPDMD-GFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLK 119 (584)
Q Consensus 54 L~~L~~~~~~pDLVIlDi~MPdmd-GlELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~K 119 (584)
++.|.+....+|+|++|+.--... -++.+++|+...+-+.|+--.-...+.+..++++||+...+-
T Consensus 112 ~~~L~~a~~~~d~iviD~AhGhs~~~i~~ik~ir~~~p~~~viaGNV~T~e~a~~Li~aGAD~ikVg 178 (343)
T TIGR01305 112 MTSILEAVPQLKFICLDVANGYSEHFVEFVKLVREAFPEHTIMAGNVVTGEMVEELILSGADIVKVG 178 (343)
T ss_pred HHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHhhCCCCeEEEecccCHHHHHHHHHcCCCEEEEc
Confidence 334443323489999999654433 367788887654434444444677888999999999987643
No 191
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=46.97 E-value=80 Score=31.95 Aligned_cols=67 Identities=21% Similarity=0.297 Sum_probs=50.0
Q ss_pred HHHHHHHHHhcCCCceEEEEecCCCCC-CH--HHHHHHHhccCCCCEEEEEcCCChHHHHhhhhcCCceEEe
Q 007940 50 ARDALSLLRERKDGYDIVISDVNMPDM-DG--FKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLL 118 (584)
Q Consensus 50 ~~eAL~~L~~~~~~pDLVIlDi~MPdm-dG--lELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~ 118 (584)
..+.++.+... .=.++++|+..-++ .| +++++.+.....+||++-.+-...+.+.+++..||+..++
T Consensus 148 ~~~~~~~~~~~--~~~li~~di~~~G~~~g~~~~~~~~i~~~~~ipvi~~GGi~s~edi~~l~~~G~~~viv 217 (233)
T cd04723 148 PEELLRRLAKW--PEELIVLDIDRVGSGQGPDLELLERLAARADIPVIAAGGVRSVEDLELLKKLGASGALV 217 (233)
T ss_pred HHHHHHHHHHh--CCeEEEEEcCccccCCCcCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 45555555543 12599999976543 22 6778888766789999888888999999999999998875
No 192
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=46.40 E-value=1e+02 Score=29.91 Aligned_cols=94 Identities=17% Similarity=0.109 Sum_probs=57.0
Q ss_pred EEEEeCCHHHHHHHHHHH----HhCC--C-eEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCC
Q 007940 20 VLVVDDDLAWLKILEKML----KKCS--Y-EVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLP 92 (584)
Q Consensus 20 VLIVDDd~~~r~~L~~lL----~~~g--y-~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iP 92 (584)
|||-|.+-.+.-.+...+ +..+ . ..+.+.+.+++.++++. .+|+|.+|-.-| .+--++++.++......
T Consensus 53 ili~~nHi~~~g~i~~av~~~~~~~~~~~~I~VEv~~~ee~~ea~~~---g~d~I~lD~~~~-~~~~~~v~~l~~~~~~v 128 (169)
T PF01729_consen 53 ILIKDNHIAFFGGIEEAVKAARQAAPEKKKIEVEVENLEEAEEALEA---GADIIMLDNMSP-EDLKEAVEELRELNPRV 128 (169)
T ss_dssp EEE-HHHHHHHSSHHHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHT---T-SEEEEES-CH-HHHHHHHHHHHHHTTTS
T ss_pred EEehHHHHHHhCCHHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHHh---CCCEEEecCcCH-HHHHHHHHHHhhcCCcE
Confidence 455555554433333333 3333 2 33477889999998874 389999997544 22233444444444447
Q ss_pred EEEEEcCCChHHHHhhhhcCCceEE
Q 007940 93 VIMMSVDGETSRVMKGVQHGACDYL 117 (584)
Q Consensus 93 VIvlSa~~d~~~~~~aL~~GAdDYL 117 (584)
.|.+|+--+.+.+.+..+.|+|-+-
T Consensus 129 ~ie~SGGI~~~ni~~ya~~gvD~is 153 (169)
T PF01729_consen 129 KIEASGGITLENIAEYAKTGVDVIS 153 (169)
T ss_dssp EEEEESSSSTTTHHHHHHTT-SEEE
T ss_pred EEEEECCCCHHHHHHHHhcCCCEEE
Confidence 7888888888888888899987654
No 193
>PRK10742 putative methyltransferase; Provisional
Probab=46.30 E-value=1.6e+02 Score=30.74 Aligned_cols=58 Identities=17% Similarity=0.200 Sum_probs=41.2
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHHhC------CC----eEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCC
Q 007940 16 AGLRVLVVDDDLAWLKILEKMLKKC------SY----EVT-TCGLARDALSLLRERKDGYDIVISDVNMPDM 76 (584)
Q Consensus 16 ~gmrVLIVDDd~~~r~~L~~lL~~~------gy----~V~-~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdm 76 (584)
.|-+|..||-++.+...|++-|+.. +. ++. ...+..+.+. .....||+|.+|-+-|.-
T Consensus 109 ~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~---~~~~~fDVVYlDPMfp~~ 177 (250)
T PRK10742 109 VGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALT---DITPRPQVVYLDPMFPHK 177 (250)
T ss_pred cCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHh---hCCCCCcEEEECCCCCCC
Confidence 3668999999999999999999874 21 122 2344445544 333359999999988863
No 194
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=46.26 E-value=3.3e+02 Score=27.70 Aligned_cols=66 Identities=27% Similarity=0.365 Sum_probs=42.5
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhccCCCCEEEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHH
Q 007940 64 YDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFR 135 (584)
Q Consensus 64 pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlr 135 (584)
.|++++=-.-++.-|..+++.+. ..+|||+ +..+. ..+.+..|..+++..|.+.+++.+++..++.
T Consensus 264 ad~~i~ps~~~e~~~~~l~EA~a--~G~PvI~-~~~~~---~~e~i~~~~~g~~~~~~~~~~l~~~i~~~~~ 329 (355)
T cd03819 264 ADIVVSASTEPEAFGRTAVEAQA--MGRPVIA-SDHGG---ARETVRPGETGLLVPPGDAEALAQALDQILS 329 (355)
T ss_pred CCEEEecCCCCCCCchHHHHHHh--cCCCEEE-cCCCC---cHHHHhCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 45655533223444566676653 5688875 33333 2345566778999999999999999875553
No 195
>PRK14974 cell division protein FtsY; Provisional
Probab=45.53 E-value=2.2e+02 Score=30.77 Aligned_cols=55 Identities=22% Similarity=0.359 Sum_probs=33.6
Q ss_pred CCCEEEEEeCCH---HHHHHHHHHHHhCCCeEEEECCH-------HHHHHHHHhcCCCceEEEEecC
Q 007940 16 AGLRVLVVDDDL---AWLKILEKMLKKCSYEVTTCGLA-------RDALSLLRERKDGYDIVISDVN 72 (584)
Q Consensus 16 ~gmrVLIVDDd~---~~r~~L~~lL~~~gy~V~~a~~~-------~eAL~~L~~~~~~pDLVIlDi~ 72 (584)
.+.+|++++-|. ...+.++...+..|..+.....+ .++++.+.. ..+|+||+|..
T Consensus 167 ~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~~~--~~~DvVLIDTa 231 (336)
T PRK14974 167 NGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAKA--RGIDVVLIDTA 231 (336)
T ss_pred cCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHHHh--CCCCEEEEECC
Confidence 467898888773 44456666666777555433221 244444443 24899999984
No 196
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=45.21 E-value=1.8e+02 Score=25.50 Aligned_cols=24 Identities=17% Similarity=0.199 Sum_probs=14.9
Q ss_pred EeCCHHHHHHHHHHHHhCCCeEEE
Q 007940 23 VDDDLAWLKILEKMLKKCSYEVTT 46 (584)
Q Consensus 23 VDDd~~~r~~L~~lL~~~gy~V~~ 46 (584)
-|.+......+.+.|...||.+..
T Consensus 8 ~~~~k~~~~~~~~~l~~~G~~l~a 31 (110)
T cd01424 8 ADRDKPEAVEIAKRLAELGFKLVA 31 (110)
T ss_pred EcCcHhHHHHHHHHHHHCCCEEEE
Confidence 344555555666666677887753
No 197
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=45.11 E-value=1.2e+02 Score=30.36 Aligned_cols=82 Identities=12% Similarity=0.174 Sum_probs=48.0
Q ss_pred EECCHHHHHHHHHhc-CCCceEEEEecCCCCCCHHHHHHHHhccCCCCEEEEEcCCChHHHHhhhhcCCceEEeCCCCHH
Q 007940 46 TCGLARDALSLLRER-KDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMK 124 (584)
Q Consensus 46 ~a~~~~eAL~~L~~~-~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~ 124 (584)
...+.++++..++.. ..++. ++.+.|-.-+.++.+++++...+--+|=.-.--+.+.+.+++++||. ||+-|.-..
T Consensus 11 r~~~~~~a~~ia~al~~gGi~--~iEit~~tp~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~-FivSP~~~~ 87 (201)
T PRK06015 11 LIDDVEHAVPLARALAAGGLP--AIEITLRTPAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSR-FIVSPGTTQ 87 (201)
T ss_pred EcCCHHHHHHHHHHHHHCCCC--EEEEeCCCccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCC-EEECCCCCH
Confidence 344555555544331 12233 55556666678888888864432212222233567888999999987 777777766
Q ss_pred HHHHHH
Q 007940 125 ELRNIW 130 (584)
Q Consensus 125 eL~~aI 130 (584)
++.+..
T Consensus 88 ~vi~~a 93 (201)
T PRK06015 88 ELLAAA 93 (201)
T ss_pred HHHHHH
Confidence 666543
No 198
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=45.10 E-value=2.3e+02 Score=28.09 Aligned_cols=67 Identities=13% Similarity=0.213 Sum_probs=46.1
Q ss_pred HHHHHHHHHhcCCCce-EEEEecCCCCC---CHHHHHHHHhccCCCCEEEEEcCCChHHHHhhhhcCCceEEe
Q 007940 50 ARDALSLLRERKDGYD-IVISDVNMPDM---DGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLL 118 (584)
Q Consensus 50 ~~eAL~~L~~~~~~pD-LVIlDi~MPdm---dGlELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~ 118 (584)
..+.++.+.+.. ++ +++.|+..-++ --++++++++....+|||.-..-.+.+.+.++++.||++.++
T Consensus 148 ~~~~~~~~~~~g--a~~iii~~~~~~g~~~g~~~~~i~~i~~~~~ipvi~~GGi~~~~di~~~~~~Ga~gv~v 218 (234)
T cd04732 148 LEELAKRFEELG--VKAIIYTDISRDGTLSGPNFELYKELAAATGIPVIASGGVSSLDDIKALKELGVAGVIV 218 (234)
T ss_pred HHHHHHHHHHcC--CCEEEEEeecCCCccCCCCHHHHHHHHHhcCCCEEEecCCCCHHHHHHHHHCCCCEEEE
Confidence 345555555432 33 55667644322 226888888766789999888788888888999999999775
No 199
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=45.07 E-value=1.3e+02 Score=29.97 Aligned_cols=95 Identities=11% Similarity=0.075 Sum_probs=59.0
Q ss_pred HHHHHhCCC-eEEEECCHHHHHHHHHhc-CCCceEEEEecCCCCCCHHHHHHHHhccCCCCEE-EEEcCCChHHHHhhhh
Q 007940 34 EKMLKKCSY-EVTTCGLARDALSLLRER-KDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVI-MMSVDGETSRVMKGVQ 110 (584)
Q Consensus 34 ~~lL~~~gy-~V~~a~~~~eAL~~L~~~-~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVI-vlSa~~d~~~~~~aL~ 110 (584)
.+.|+..+. -|....+.+++++.++.. ..++. ++.+.+-.-++++.++.++.....+++ =.-.--+.+.+..+++
T Consensus 4 ~~~l~~~~~~~v~r~~~~~~~~~~~~a~~~gGi~--~iEvt~~~~~~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~ 81 (206)
T PRK09140 4 MQPFTKLPLIAILRGITPDEALAHVGALIEAGFR--AIEIPLNSPDPFDSIAALVKALGDRALIGAGTVLSPEQVDRLAD 81 (206)
T ss_pred hhHHHhCCEEEEEeCCCHHHHHHHHHHHHHCCCC--EEEEeCCCccHHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHH
Confidence 455666663 344556677777765542 22333 667777777899999998655443433 2222345678889999
Q ss_pred cCCceEEeCCCCHHHHHHHHH
Q 007940 111 HGACDYLLKPIRMKELRNIWQ 131 (584)
Q Consensus 111 ~GAdDYL~KP~~~~eL~~aI~ 131 (584)
+||+ |+.-|....++.+..+
T Consensus 82 aGA~-fivsp~~~~~v~~~~~ 101 (206)
T PRK09140 82 AGGR-LIVTPNTDPEVIRRAV 101 (206)
T ss_pred cCCC-EEECCCCCHHHHHHHH
Confidence 9995 6666876666665443
No 200
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=44.98 E-value=2e+02 Score=30.37 Aligned_cols=101 Identities=19% Similarity=0.272 Sum_probs=58.2
Q ss_pred CEEEEEe--CCHH---HHHHHHHHHHhCCCeEEEECCHHHHHHH-------------HHhcCCCceEEEEecCCCCCCHH
Q 007940 18 LRVLVVD--DDLA---WLKILEKMLKKCSYEVTTCGLARDALSL-------------LRERKDGYDIVISDVNMPDMDGF 79 (584)
Q Consensus 18 mrVLIVD--Dd~~---~r~~L~~lL~~~gy~V~~a~~~~eAL~~-------------L~~~~~~pDLVIlDi~MPdmdGl 79 (584)
|+|.|+- +.+. ..+.+.++|++.|+.+.......+.+.. .......+|+||+ -|.||-
T Consensus 1 m~igii~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~----lGGDGT 76 (292)
T PRK01911 1 MKIAIFGQTYQESASPYIQELFDELEERGAEVLIEEKFLDFLKQDLKFHPSYDTFSDNEELDGSADMVIS----IGGDGT 76 (292)
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhhccccccccccccccchhhcccCCCEEEE----ECCcHH
Confidence 5777772 2233 3455666777888887764432222110 0111123677766 367873
Q ss_pred --HHHHHHhccCCCCEEEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHhc
Q 007940 80 --KLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 137 (584)
Q Consensus 80 --ELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrrk 137 (584)
..++.+. ...+||+-+- .|-.+||+ .+..+++..++.+++..+
T Consensus 77 ~L~aa~~~~-~~~~PilGIN-------------~G~lGFLt-~~~~~~~~~~l~~i~~g~ 121 (292)
T PRK01911 77 FLRTATYVG-NSNIPILGIN-------------TGRLGFLA-TVSKEEIEETIDELLNGD 121 (292)
T ss_pred HHHHHHHhc-CCCCCEEEEe-------------cCCCCccc-ccCHHHHHHHHHHHHcCC
Confidence 3333332 3478888654 24456776 577899999999888654
No 201
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=44.49 E-value=1.6e+02 Score=28.29 Aligned_cols=80 Identities=18% Similarity=0.141 Sum_probs=52.6
Q ss_pred HHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCC-------CHHHHHHHHhccCCCCEEEEEcCCChHHHH
Q 007940 34 EKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDM-------DGFKLLEHVGLEMDLPVIMMSVDGETSRVM 106 (584)
Q Consensus 34 ~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdm-------dGlELL~~Ir~~~~iPVIvlSa~~d~~~~~ 106 (584)
+..+......-..+.+.+++.++.+. .+|.|++----|.. -|++.++.+.....+||+.+-+- +.+.+.
T Consensus 89 r~~~~~~~~ig~S~h~~~e~~~a~~~---g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~~~~pv~AlGGI-~~~~i~ 164 (180)
T PF02581_consen 89 RKLLGPDKIIGASCHSLEEAREAEEL---GADYVFLGPVFPTSSKPGAPPLGLDGLREIARASPIPVYALGGI-TPENIP 164 (180)
T ss_dssp HHHHTTTSEEEEEESSHHHHHHHHHC---TTSEEEEETSS--SSSSS-TTCHHHHHHHHHHHTSSCEEEESS---TTTHH
T ss_pred hhhcccceEEEeecCcHHHHHHhhhc---CCCEEEECCccCCCCCccccccCHHHHHHHHHhCCCCEEEEcCC-CHHHHH
Confidence 33443333333478888886665543 37999988764432 38888888877778999998665 455677
Q ss_pred hhhhcCCceEE
Q 007940 107 KGVQHGACDYL 117 (584)
Q Consensus 107 ~aL~~GAdDYL 117 (584)
++.+.||+++-
T Consensus 165 ~l~~~Ga~gvA 175 (180)
T PF02581_consen 165 ELREAGADGVA 175 (180)
T ss_dssp HHHHTT-SEEE
T ss_pred HHHHcCCCEEE
Confidence 88899998864
No 202
>PLN02591 tryptophan synthase
Probab=44.39 E-value=2.9e+02 Score=28.59 Aligned_cols=99 Identities=17% Similarity=0.122 Sum_probs=64.1
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCeEE-EE-CC-HHHHHHHHHhcCCCceEEEEecCCCCCC---------HHHHHHHHh
Q 007940 19 RVLVVDDDLAWLKILEKMLKKCSYEVT-TC-GL-ARDALSLLRERKDGYDIVISDVNMPDMD---------GFKLLEHVG 86 (584)
Q Consensus 19 rVLIVDDd~~~r~~L~~lL~~~gy~V~-~a-~~-~~eAL~~L~~~~~~pDLVIlDi~MPdmd---------GlELL~~Ir 86 (584)
-|+|.|-...-...+...+++.|...+ .+ .+ ..+-+..+.+....| | --+.+.+.. -.+++++++
T Consensus 109 GviipDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~gF--I-Y~Vs~~GvTG~~~~~~~~~~~~i~~vk 185 (250)
T PLN02591 109 GLVVPDLPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEASEGF--V-YLVSSTGVTGARASVSGRVESLLQELK 185 (250)
T ss_pred EEEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhCCCc--E-EEeeCCCCcCCCcCCchhHHHHHHHHH
Confidence 466777677777788888888886544 33 23 344455555544332 2 111222222 244577777
Q ss_pred ccCCCCEEEEEcCCChHHHHhhhhcCCceEEeCC
Q 007940 87 LEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKP 120 (584)
Q Consensus 87 ~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~KP 120 (584)
...++||++=.+-.+.+.+.++++.|||+.|+-.
T Consensus 186 ~~~~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGS 219 (250)
T PLN02591 186 EVTDKPVAVGFGISKPEHAKQIAGWGADGVIVGS 219 (250)
T ss_pred hcCCCceEEeCCCCCHHHHHHHHhcCCCEEEECH
Confidence 7778999876666778889999999999999874
No 203
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=44.15 E-value=2e+02 Score=32.11 Aligned_cols=57 Identities=11% Similarity=0.050 Sum_probs=38.1
Q ss_pred CCCEEEEEeCCHH---HHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcC--CCceEEEEecC
Q 007940 16 AGLRVLVVDDDLA---WLKILEKMLKKCSYEVTTCGLARDALSLLRERK--DGYDIVISDVN 72 (584)
Q Consensus 16 ~gmrVLIVDDd~~---~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~--~~pDLVIlDi~ 72 (584)
.+.+|.+|+-|+. ..+.++.+-+..+..+..+.+..+..+.+.... ..+|+||+|.-
T Consensus 233 ~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~~~D~VLIDTA 294 (407)
T PRK12726 233 QNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVNCVDHILIDTV 294 (407)
T ss_pred cCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcCCCCEEEEECC
Confidence 4678999988874 245566666666766666677766555554321 34899999983
No 204
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=43.74 E-value=31 Score=33.63 Aligned_cols=32 Identities=9% Similarity=0.266 Sum_probs=27.1
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCCeEEEEC
Q 007940 17 GLRVLVVDDDLAWLKILEKMLKKCSYEVTTCG 48 (584)
Q Consensus 17 gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~ 48 (584)
.|||||||.....-..+.+.|++.|+++.++.
T Consensus 1 ~~~iliid~~dsf~~~i~~~l~~~g~~~~v~~ 32 (190)
T PRK06895 1 ATKLLIINNHDSFTFNLVDLIRKLGVPMQVVN 32 (190)
T ss_pred CcEEEEEeCCCchHHHHHHHHHHcCCcEEEEE
Confidence 37999999988888889999999998776555
No 205
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=43.36 E-value=3.3e+02 Score=29.38 Aligned_cols=98 Identities=12% Similarity=0.153 Sum_probs=62.3
Q ss_pred EEEEEeC----CHHHHHHHHHHHHhCCCe-EE--EECCHHHHHHHHHhcCCCceEEEEecCCC-----------CCC--H
Q 007940 19 RVLVVDD----DLAWLKILEKMLKKCSYE-VT--TCGLARDALSLLRERKDGYDIVISDVNMP-----------DMD--G 78 (584)
Q Consensus 19 rVLIVDD----d~~~r~~L~~lL~~~gy~-V~--~a~~~~eAL~~L~~~~~~pDLVIlDi~MP-----------dmd--G 78 (584)
.++++|- .....+.++.+-+..+.. |+ -+.+.+.|..+++. +.|.|.+-+.-- +.. +
T Consensus 110 d~i~~D~ahg~s~~~~~~i~~i~~~~p~~~vi~GnV~t~e~a~~l~~a---Gad~I~V~~G~G~~~~tr~~~g~g~~~~~ 186 (321)
T TIGR01306 110 EYITIDIAHGHSNSVINMIKHIKTHLPDSFVIAGNVGTPEAVRELENA---GADATKVGIGPGKVCITKIKTGFGTGGWQ 186 (321)
T ss_pred CEEEEeCccCchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHc---CcCEEEECCCCCccccceeeeccCCCchH
Confidence 5677766 255555666665555432 22 13466777766653 367776543110 111 3
Q ss_pred HHHHHHHhccCCCCEEEEEcCCChHHHHhhhhcCCceEEeC
Q 007940 79 FKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLK 119 (584)
Q Consensus 79 lELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~K 119 (584)
+..+..++...++|||.-.+-.....+.+|+.+||+....=
T Consensus 187 l~ai~ev~~a~~~pVIadGGIr~~~Di~KALa~GAd~Vmig 227 (321)
T TIGR01306 187 LAALRWCAKAARKPIIADGGIRTHGDIAKSIRFGASMVMIG 227 (321)
T ss_pred HHHHHHHHHhcCCeEEEECCcCcHHHHHHHHHcCCCEEeec
Confidence 55666666556799998888888899999999999987553
No 206
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=43.04 E-value=3.2e+02 Score=29.08 Aligned_cols=65 Identities=17% Similarity=0.186 Sum_probs=43.4
Q ss_pred eEEEEecCCCCCCHHHHHHHHhccCCCCEEEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 007940 65 DIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 136 (584)
Q Consensus 65 DLVIlDi~MPdmdGlELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrr 136 (584)
|+.++ ...|..-|+.+++.+. ..+|||. |..+. ..+.+..|..+++..|.+.++|.+++.+++..
T Consensus 302 dv~v~-~s~~e~~~~~llEAmA--~G~PVIa-s~~~g---~~e~i~~~~~G~lv~~~d~~~la~~i~~ll~~ 366 (396)
T cd03818 302 DVHVY-LTYPFVLSWSLLEAMA--CGCLVVG-SDTAP---VREVITDGENGLLVDFFDPDALAAAVIELLDD 366 (396)
T ss_pred cEEEE-cCcccccchHHHHHHH--CCCCEEE-cCCCC---chhhcccCCceEEcCCCCHHHHHHHHHHHHhC
Confidence 44443 2234444556666653 5688885 33332 34566778899999999999999999988753
No 207
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=42.96 E-value=1.2e+02 Score=28.53 Aligned_cols=59 Identities=22% Similarity=0.260 Sum_probs=45.8
Q ss_pred CCCCCCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCH-HHHHHHHHhcCCCceEEEEecCCCC
Q 007940 13 FNPAGLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLA-RDALSLLRERKDGYDIVISDVNMPD 75 (584)
Q Consensus 13 f~p~gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~-~eAL~~L~~~~~~pDLVIlDi~MPd 75 (584)
++..|.+|+|+.......+-|..+|.+.|..|..+..- .+..+.+++ .|+|+.-..-+.
T Consensus 24 ~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~~v~~----ADIVvsAtg~~~ 83 (140)
T cd05212 24 VRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSKVHD----ADVVVVGSPKPE 83 (140)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHHHHhh----CCEEEEecCCCC
Confidence 45678999999999999999999999999999888721 122233333 689999887764
No 208
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=42.77 E-value=1.8e+02 Score=32.45 Aligned_cols=100 Identities=20% Similarity=0.306 Sum_probs=60.1
Q ss_pred CCCEEEEEeC---CHH-HHHHHHHHHHhCC-CeEE--EECCHHHHHHHHHhcCCCceEEEEecCCCC------------C
Q 007940 16 AGLRVLVVDD---DLA-WLKILEKMLKKCS-YEVT--TCGLARDALSLLRERKDGYDIVISDVNMPD------------M 76 (584)
Q Consensus 16 ~gmrVLIVDD---d~~-~r~~L~~lL~~~g-y~V~--~a~~~~eAL~~L~~~~~~pDLVIlDi~MPd------------m 76 (584)
+|..+++||- +.. ..+.++.+-+... ..|. .+.+.++|..++.. +.|.|.+-+. |+ .
T Consensus 235 aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~a---Gad~i~vg~g-~G~~~~t~~~~~~g~ 310 (450)
T TIGR01302 235 AGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGNVATAEQAKALIDA---GADGLRVGIG-PGSICTTRIVAGVGV 310 (450)
T ss_pred hCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHHh---CCCEEEECCC-CCcCCccceecCCCc
Confidence 4678888887 433 3334444434422 2222 45677777777653 3677754321 11 1
Q ss_pred CHHHHHHHH---hccCCCCEEEEEcCCChHHHHhhhhcCCceEEeC
Q 007940 77 DGFKLLEHV---GLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLK 119 (584)
Q Consensus 77 dGlELL~~I---r~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~K 119 (584)
.-+.++..+ .....+|||.--.-.....+.+|+.+||+....=
T Consensus 311 p~~~~i~~~~~~~~~~~vpviadGGi~~~~di~kAla~GA~~V~~G 356 (450)
T TIGR01302 311 PQITAVYDVAEYAAQSGIPVIADGGIRYSGDIVKALAAGADAVMLG 356 (450)
T ss_pred cHHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 223444433 2235789887667778889999999999987764
No 209
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=42.60 E-value=1.5e+02 Score=30.95 Aligned_cols=100 Identities=18% Similarity=0.252 Sum_probs=57.1
Q ss_pred CEEEEEeC-----CHHHHHHHHHHHHhCCCeEEEECCHHHHHHH-----HHh-cCCCceEEEEecCCCCCCHH--HHHHH
Q 007940 18 LRVLVVDD-----DLAWLKILEKMLKKCSYEVTTCGLARDALSL-----LRE-RKDGYDIVISDVNMPDMDGF--KLLEH 84 (584)
Q Consensus 18 mrVLIVDD-----d~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~-----L~~-~~~~pDLVIlDi~MPdmdGl--ELL~~ 84 (584)
|||.||-. .....+.+.++|++.|+++.......+.... +.. ....+|+||+ -|.||. ++++
T Consensus 1 m~v~iv~~~~k~~~~~~~~~I~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~----iGGDGTlL~a~~- 75 (277)
T PRK03708 1 MRFGIVARRDKEEALKLAYRVYDFLKVSGYEVVVDSETYEHLPEFSEEDVLPLEEMDVDFIIA----IGGDGTILRIEH- 75 (277)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccccccccCCCEEEE----EeCcHHHHHHHH-
Confidence 67888722 2334566777788888887765322111110 000 0113677766 366873 3344
Q ss_pred HhccCCCCEEEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHhc
Q 007940 85 VGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 137 (584)
Q Consensus 85 Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrrk 137 (584)
+ ....+||+.+.. |=.+|+. .+..+++..++.++++..
T Consensus 76 ~-~~~~~pi~gIn~-------------G~lGFl~-~~~~~~~~~~l~~i~~g~ 113 (277)
T PRK03708 76 K-TKKDIPILGINM-------------GTLGFLT-EVEPEETFFALSRLLEGD 113 (277)
T ss_pred h-cCCCCeEEEEeC-------------CCCCccc-cCCHHHHHHHHHHHHcCC
Confidence 3 234788887753 2235555 567888888888887654
No 210
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=42.36 E-value=2.4e+02 Score=28.68 Aligned_cols=90 Identities=8% Similarity=-0.065 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHhCCCeEEEECCH---HHHHHHHHhcCCCceEEEEecCCCCCC------HHHHHHHHhccC-CCCEEEEE
Q 007940 28 AWLKILEKMLKKCSYEVTTCGLA---RDALSLLRERKDGYDIVISDVNMPDMD------GFKLLEHVGLEM-DLPVIMMS 97 (584)
Q Consensus 28 ~~r~~L~~lL~~~gy~V~~a~~~---~eAL~~L~~~~~~pDLVIlDi~MPdmd------GlELL~~Ir~~~-~iPVIvlS 97 (584)
.....+...+++.|..+..+-+. .+.++.+.... ..++++ -.+|+.- -.+.+++++... ..||++=.
T Consensus 116 ~~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~~--~~~l~m-sv~~~~g~~~~~~~~~~i~~lr~~~~~~~i~v~g 192 (244)
T PRK13125 116 DDLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKLS--PLFIYY-GLRPATGVPLPVSVERNIKRVRNLVGNKYLVVGF 192 (244)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhC--CCEEEE-EeCCCCCCCchHHHHHHHHHHHHhcCCCCEEEeC
Confidence 34456677778888765533322 34445444332 457767 4455521 134555565433 46755433
Q ss_pred cCCChHHHHhhhhcCCceEEeCC
Q 007940 98 VDGETSRVMKGVQHGACDYLLKP 120 (584)
Q Consensus 98 a~~d~~~~~~aL~~GAdDYL~KP 120 (584)
+-...+.+.+++++||+.+++--
T Consensus 193 GI~~~e~i~~~~~~gaD~vvvGS 215 (244)
T PRK13125 193 GLDSPEDARDALSAGADGVVVGT 215 (244)
T ss_pred CcCCHHHHHHHHHcCCCEEEECH
Confidence 33467888888899999999863
No 211
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=42.15 E-value=2.4e+02 Score=28.68 Aligned_cols=96 Identities=10% Similarity=0.135 Sum_probs=59.1
Q ss_pred HHHHHHhCC-CeEEEECCHHHHHHHHHhc-CCCceEEEEecCCCCCCHHHHHHHHhcc--CCCCEEEE--EcCCChHHHH
Q 007940 33 LEKMLKKCS-YEVTTCGLARDALSLLRER-KDGYDIVISDVNMPDMDGFKLLEHVGLE--MDLPVIMM--SVDGETSRVM 106 (584)
Q Consensus 33 L~~lL~~~g-y~V~~a~~~~eAL~~L~~~-~~~pDLVIlDi~MPdmdGlELL~~Ir~~--~~iPVIvl--Sa~~d~~~~~ 106 (584)
+.+.|.+.+ .-|+...+.++|+..++.. ..++. ++.+.|-.-++++.++.++.. ...|=+++ -.--+.+.+.
T Consensus 8 ~~~~l~~~~vi~Vvr~~~~~~a~~~~~al~~gGi~--~iEiT~~tp~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~ 85 (222)
T PRK07114 8 VLTAMKATGMVPVFYHADVEVAKKVIKACYDGGAR--VFEFTNRGDFAHEVFAELVKYAAKELPGMILGVGSIVDAATAA 85 (222)
T ss_pred HHHHHHhCCEEEEEEcCCHHHHHHHHHHHHHCCCC--EEEEeCCCCcHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHH
Confidence 345555666 3455667788887765542 12333 666667666788888887522 12332333 2235678889
Q ss_pred hhhhcCCceEEeCCCCHHHHHHHHH
Q 007940 107 KGVQHGACDYLLKPIRMKELRNIWQ 131 (584)
Q Consensus 107 ~aL~~GAdDYL~KP~~~~eL~~aI~ 131 (584)
.++++||. |++-|.-..++.+..+
T Consensus 86 ~a~~aGA~-FiVsP~~~~~v~~~~~ 109 (222)
T PRK07114 86 LYIQLGAN-FIVTPLFNPDIAKVCN 109 (222)
T ss_pred HHHHcCCC-EEECCCCCHHHHHHHH
Confidence 99999987 6777776666665443
No 212
>PRK13566 anthranilate synthase; Provisional
Probab=42.09 E-value=65 Score=38.38 Aligned_cols=79 Identities=23% Similarity=0.331 Sum_probs=51.1
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEe--cCCCC-CCHHHHHHHHhccCCC
Q 007940 15 PAGLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISD--VNMPD-MDGFKLLEHVGLEMDL 91 (584)
Q Consensus 15 p~gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlD--i~MPd-mdGlELL~~Ir~~~~i 91 (584)
-.++||||||........|.++|++.|++|.++..... .+.+... .||.||+- -..|. ..-.++++.+. ...+
T Consensus 524 ~~g~~IlvID~~dsf~~~l~~~Lr~~G~~v~vv~~~~~-~~~~~~~--~~DgVVLsgGpgsp~d~~~~~lI~~a~-~~~i 599 (720)
T PRK13566 524 GEGKRVLLVDHEDSFVHTLANYFRQTGAEVTTVRYGFA-EEMLDRV--NPDLVVLSPGPGRPSDFDCKATIDAAL-ARNL 599 (720)
T ss_pred CCCCEEEEEECCCchHHHHHHHHHHCCCEEEEEECCCC-hhHhhhc--CCCEEEECCCCCChhhCCcHHHHHHHH-HCCC
Confidence 36799999999988899999999999998876654432 2223222 38887762 11121 12334454432 3479
Q ss_pred CEEEEE
Q 007940 92 PVIMMS 97 (584)
Q Consensus 92 PVIvlS 97 (584)
||+-++
T Consensus 600 PILGIC 605 (720)
T PRK13566 600 PIFGVC 605 (720)
T ss_pred cEEEEe
Confidence 998776
No 213
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=42.06 E-value=1.5e+02 Score=31.32 Aligned_cols=93 Identities=14% Similarity=0.130 Sum_probs=58.2
Q ss_pred EEEEEeCCHHHHHHHHHHHH----hCCCe---EEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCC
Q 007940 19 RVLVVDDDLAWLKILEKMLK----KCSYE---VTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDL 91 (584)
Q Consensus 19 rVLIVDDd~~~r~~L~~lL~----~~gy~---V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~i 91 (584)
-|||=|.|-...-.++..++ ..++. -+.+.+.+++.+++.. ++|+|++|-+-|+ .--+.++.+ .....
T Consensus 160 avliKDNHia~~g~i~~Av~~aR~~~~~~~kIEVEvesle~~~eAl~a---gaDiImLDNm~~e-~~~~av~~l-~~~~~ 234 (280)
T COG0157 160 AVLIKDNHIAAAGSITEAVRRARAAAPFTKKIEVEVESLEEAEEALEA---GADIIMLDNMSPE-ELKEAVKLL-GLAGR 234 (280)
T ss_pred eEEehhhHHHHhccHHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHHc---CCCEEEecCCCHH-HHHHHHHHh-ccCCc
Confidence 36666666665554665554 34542 2467889999998875 3899999954442 222233332 12334
Q ss_pred CEEEEEcCCChHHHHhhhhcCCceE
Q 007940 92 PVIMMSVDGETSRVMKGVQHGACDY 116 (584)
Q Consensus 92 PVIvlSa~~d~~~~~~aL~~GAdDY 116 (584)
.++-.|+.-..+.+......|+|-+
T Consensus 235 ~~lEaSGgIt~~ni~~yA~tGVD~I 259 (280)
T COG0157 235 ALLEASGGITLENIREYAETGVDVI 259 (280)
T ss_pred eEEEEeCCCCHHHHHHHhhcCCCEE
Confidence 4566777788888888888887643
No 214
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=41.97 E-value=1.6e+02 Score=28.22 Aligned_cols=77 Identities=12% Similarity=0.252 Sum_probs=51.0
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHHhC--CCeEEEECC-------HHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh
Q 007940 16 AGLRVLVVDDDLAWLKILEKMLKKC--SYEVTTCGL-------ARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVG 86 (584)
Q Consensus 16 ~gmrVLIVDDd~~~r~~L~~lL~~~--gy~V~~a~~-------~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir 86 (584)
.+.+|.++-..+...+.+...|++. +..++.+.+ .++.++.+... .||+|++-+.+|.-. .++.+.+
T Consensus 47 ~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~~--~pdiv~vglG~PkQE--~~~~~~~ 122 (172)
T PF03808_consen 47 RGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINAS--GPDIVFVGLGAPKQE--RWIARHR 122 (172)
T ss_pred cCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHHc--CCCEEEEECCCCHHH--HHHHHHH
Confidence 4679999999999999888888876 344443333 23444455553 499999999998755 3444554
Q ss_pred ccCCCCEEEEE
Q 007940 87 LEMDLPVIMMS 97 (584)
Q Consensus 87 ~~~~iPVIvlS 97 (584)
..-+.+ ++++
T Consensus 123 ~~l~~~-v~i~ 132 (172)
T PF03808_consen 123 QRLPAG-VIIG 132 (172)
T ss_pred HHCCCC-EEEE
Confidence 444555 4444
No 215
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=41.81 E-value=1.8e+02 Score=30.71 Aligned_cols=94 Identities=10% Similarity=0.134 Sum_probs=57.3
Q ss_pred EEEEeCCHHHH-------HHHHHHHHhCC--CeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCC
Q 007940 20 VLVVDDDLAWL-------KILEKMLKKCS--YEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMD 90 (584)
Q Consensus 20 VLIVDDd~~~r-------~~L~~lL~~~g--y~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~ 90 (584)
|||-|.|-... ..++.+=+..+ ...+.+.+.++|.+++.. ++|+|++|- |.-.+--++.+.++....
T Consensus 160 vLikdNHi~~~g~~~~i~~av~~~r~~~~~~kIeVEv~tleqa~ea~~a---gaDiI~LDn-~~~e~l~~av~~~~~~~~ 235 (284)
T PRK06096 160 ILLFANHRHFLHDPQDWSGAINQLRRHAPEKKIVVEADTPKEAIAALRA---QPDVLQLDK-FSPQQATEIAQIAPSLAP 235 (284)
T ss_pred hhhHHHHHHHhCCcccHHHHHHHHHHhCCCCCEEEECCCHHHHHHHHHc---CCCEEEECC-CCHHHHHHHHHHhhccCC
Confidence 55555554332 33333333333 244567889999998864 389999994 433333334444432223
Q ss_pred CCEEEEEcCCChHHHHhhhhcCCceEE
Q 007940 91 LPVIMMSVDGETSRVMKGVQHGACDYL 117 (584)
Q Consensus 91 iPVIvlSa~~d~~~~~~aL~~GAdDYL 117 (584)
-..|-.|+--..+.+.+....|+|-+.
T Consensus 236 ~~~leaSGGI~~~ni~~yA~tGvD~Is 262 (284)
T PRK06096 236 HCTLSLAGGINLNTLKNYADCGIRLFI 262 (284)
T ss_pred CeEEEEECCCCHHHHHHHHhcCCCEEE
Confidence 346777888888888888888877554
No 216
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=41.80 E-value=88 Score=31.82 Aligned_cols=57 Identities=19% Similarity=0.260 Sum_probs=40.5
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCCe--EEEECCHHHHHHHHHh-cCCCceEEEEecCCC
Q 007940 17 GLRVLVVDDDLAWLKILEKMLKKCSYE--VTTCGLARDALSLLRE-RKDGYDIVISDVNMP 74 (584)
Q Consensus 17 gmrVLIVDDd~~~r~~L~~lL~~~gy~--V~~a~~~~eAL~~L~~-~~~~pDLVIlDi~MP 74 (584)
.-|+.-||-++...+.-++.+++.|.. |..... -+|++.+.. ....||+|++|..=+
T Consensus 84 ~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~-gdal~~l~~~~~~~fDliFIDadK~ 143 (219)
T COG4122 84 DGRLTTIERDEERAEIARENLAEAGVDDRIELLLG-GDALDVLSRLLDGSFDLVFIDADKA 143 (219)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEec-CcHHHHHHhccCCCccEEEEeCChh
Confidence 449999999999999999999999842 333321 244444443 234699999998543
No 217
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=41.74 E-value=1.9e+02 Score=31.30 Aligned_cols=78 Identities=23% Similarity=0.275 Sum_probs=49.6
Q ss_pred CCEEEEEeCCHHH-----HHHHHHHHHhCCCeEEEEC---------CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHH
Q 007940 17 GLRVLVVDDDLAW-----LKILEKMLKKCSYEVTTCG---------LARDALSLLRERKDGYDIVISDVNMPDMDGFKLL 82 (584)
Q Consensus 17 gmrVLIVDDd~~~-----r~~L~~lL~~~gy~V~~a~---------~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL 82 (584)
+-|+|||-|.... .+.+...|+..|.++..+. +..++++.++... +|+||- +-+..-+++.
T Consensus 28 ~~r~livt~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~--~D~IIa---iGGGS~iD~a 102 (382)
T cd08187 28 GKKVLLVYGGGSIKKNGLYDRVIASLKEAGIEVVELGGVEPNPRLETVREGIELCKEEK--VDFILA---VGGGSVIDSA 102 (382)
T ss_pred CCEEEEEeCCcHHHhcCcHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHHcC--CCEEEE---eCChHHHHHH
Confidence 3589999886444 3678888988887766543 2346666666643 899873 3354555555
Q ss_pred HHHhc------------------cCCCCEEEEEcC
Q 007940 83 EHVGL------------------EMDLPVIMMSVD 99 (584)
Q Consensus 83 ~~Ir~------------------~~~iPVIvlSa~ 99 (584)
|.+.. .+.+|+|.+...
T Consensus 103 K~ia~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTT 137 (382)
T cd08187 103 KAIAAGAPYDGDVWDFFTGKAKIEKALPVGTVLTL 137 (382)
T ss_pred HHHHhHhhCCCCHHHHhcccCCCCCCCCEEEEeCC
Confidence 54421 246799888654
No 218
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=41.70 E-value=30 Score=34.10 Aligned_cols=74 Identities=14% Similarity=0.212 Sum_probs=46.9
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecC--CCCCCH--HHHHHHHhccCCCCEEE
Q 007940 20 VLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVN--MPDMDG--FKLLEHVGLEMDLPVIM 95 (584)
Q Consensus 20 VLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~--MPdmdG--lELL~~Ir~~~~iPVIv 95 (584)
|||||.+-..-..|.+.|++.|+++.+....+..++.+... .||.||+-=. -|...+ .++++.+ ...+||+-
T Consensus 2 il~idn~dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~~--~~d~iIlsgGP~~p~~~~~~~~~i~~~--~~~~PvLG 77 (195)
T PRK07649 2 ILMIDNYDSFTFNLVQFLGELGQELVVKRNDEVTISDIENM--KPDFLMISPGPCSPNEAGISMEVIRYF--AGKIPIFG 77 (195)
T ss_pred EEEEeCCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHhhC--CCCEEEECCCCCChHhCCCchHHHHHh--cCCCCEEE
Confidence 89999999999999999999998887666543333333332 3888887321 111111 2333332 34689887
Q ss_pred EE
Q 007940 96 MS 97 (584)
Q Consensus 96 lS 97 (584)
++
T Consensus 78 IC 79 (195)
T PRK07649 78 VC 79 (195)
T ss_pred Ec
Confidence 75
No 219
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=41.70 E-value=2.1e+02 Score=32.77 Aligned_cols=51 Identities=10% Similarity=0.018 Sum_probs=24.2
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhc-cCCCCEEEEEcCCChHHHHhhhhcCCceEE
Q 007940 64 YDIVISDVNMPDMDGFKLLEHVGL-EMDLPVIMMSVDGETSRVMKGVQHGACDYL 117 (584)
Q Consensus 64 pDLVIlDi~MPdmdGlELL~~Ir~-~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL 117 (584)
.|.|++-+.-...+ ..++..++. .++.++|.-+.+ .+......++||+..+
T Consensus 482 a~~viv~~~~~~~~-~~iv~~~~~~~~~~~iiar~~~--~~~~~~l~~~Gad~vv 533 (558)
T PRK10669 482 ARWLLLTIPNGYEA-GEIVASAREKRPDIEIIARAHY--DDEVAYITERGANQVV 533 (558)
T ss_pred cCEEEEEcCChHHH-HHHHHHHHHHCCCCeEEEEECC--HHHHHHHHHcCCCEEE
Confidence 56665544222111 123333332 356667665533 3444445578877544
No 220
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=40.30 E-value=2.9e+02 Score=29.06 Aligned_cols=54 Identities=20% Similarity=0.224 Sum_probs=38.7
Q ss_pred HHHHHHHHhccCCCCEEEEEc-CCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHhc
Q 007940 78 GFKLLEHVGLEMDLPVIMMSV-DGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 137 (584)
Q Consensus 78 GlELL~~Ir~~~~iPVIvlSa-~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrrk 137 (584)
|+.+++.+. ..+|||. |. .+. ..+.+..|.++++..|.+.++|.+++..++...
T Consensus 271 ~~~~lEAma--~G~Pvv~-s~~~~g---~~eiv~~~~~G~lv~~~d~~~la~~i~~l~~~~ 325 (359)
T PRK09922 271 PMTLLEAMS--YGIPCIS-SDCMSG---PRDIIKPGLNGELYTPGNIDEFVGKLNKVISGE 325 (359)
T ss_pred ChHHHHHHH--cCCCEEE-eCCCCC---hHHHccCCCceEEECCCCHHHHHHHHHHHHhCc
Confidence 555666553 5688874 33 333 335567788999999999999999999887543
No 221
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=40.13 E-value=1.3e+02 Score=29.56 Aligned_cols=56 Identities=14% Similarity=0.170 Sum_probs=33.0
Q ss_pred ceEEEEecCCCCCCH-------HHHHHHHhcc-C--CC-CEEEEEcCCChHHHHhhhhcCCceEEeC
Q 007940 64 YDIVISDVNMPDMDG-------FKLLEHVGLE-M--DL-PVIMMSVDGETSRVMKGVQHGACDYLLK 119 (584)
Q Consensus 64 pDLVIlDi~MPdmdG-------lELL~~Ir~~-~--~i-PVIvlSa~~d~~~~~~aL~~GAdDYL~K 119 (584)
+|.|+++-.-|+..| ++.+++++.. . .+ ++|++.+--..+.+.++.+.||+.+++-
T Consensus 132 ~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~~~nv~~l~~~GaD~vvvg 198 (220)
T PRK05581 132 LDLVLLMSVNPGFGGQKFIPEVLEKIRELRKLIDERGLDILIEVDGGINADNIKECAEAGADVFVAG 198 (220)
T ss_pred CCEEEEEEECCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHcCCCEEEEC
Confidence 577766654465443 3344444322 1 22 4555656556677888888999977643
No 222
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=40.01 E-value=83 Score=30.39 Aligned_cols=55 Identities=13% Similarity=0.112 Sum_probs=34.1
Q ss_pred ceEEEEecCCCCCCH-------HHHHHHHhcc-----CCCCEEEEEcCCChHHHHhhhhcCCceEEeC
Q 007940 64 YDIVISDVNMPDMDG-------FKLLEHVGLE-----MDLPVIMMSVDGETSRVMKGVQHGACDYLLK 119 (584)
Q Consensus 64 pDLVIlDi~MPdmdG-------lELL~~Ir~~-----~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~K 119 (584)
+|.|+++-..|+..| ++.++++++. +++|+++.- --..+.+.++++.||+.+++-
T Consensus 128 ~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~G-GI~~env~~~~~~gad~iivg 194 (211)
T cd00429 128 VDLVLVMSVNPGFGGQKFIPEVLEKIRKLRELIPENNLNLLIEVDG-GINLETIPLLAEAGADVLVAG 194 (211)
T ss_pred CCEEEEEEECCCCCCcccCHHHHHHHHHHHHHHHhcCCCeEEEEEC-CCCHHHHHHHHHcCCCEEEEC
Confidence 577777665565433 3444444322 147776554 344577888999999988753
No 223
>TIGR03061 pip_yhgE_Nterm YhgE/Pip N-terminal domain. This family contains the N-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03062, represents the conserved C-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=39.62 E-value=73 Score=30.16 Aligned_cols=52 Identities=33% Similarity=0.252 Sum_probs=36.2
Q ss_pred CCCCEEEEEeCCHHH---------HHHHHHHHHhCC-CeEEEECCHHHHHHHHHhcCCCceEEEE
Q 007940 15 PAGLRVLVVDDDLAW---------LKILEKMLKKCS-YEVTTCGLARDALSLLRERKDGYDIVIS 69 (584)
Q Consensus 15 p~gmrVLIVDDd~~~---------r~~L~~lL~~~g-y~V~~a~~~~eAL~~L~~~~~~pDLVIl 69 (584)
..+++|.|||.|... .+.+.+.|+..+ +.+.. .+..+|.+.++..+ ++.+|+
T Consensus 41 ~~~lpvaVVd~D~s~~~~~~~~~~s~~l~~~l~~~~~~~~~~-~~~~ea~~~l~~g~--~~~~iv 102 (164)
T TIGR03061 41 LDNLPVAVVNEDKGATYDGKTLNAGDDLVKELKKNDDLDWHF-VSAKEAEKGLADGK--YYMVIT 102 (164)
T ss_pred cCCCeEEEEECCCCCCcCCcccchHHHHHHHHhcCCCcceEE-cCHHHHHHHhHcCc--EEEEEE
Confidence 468899999998875 455555665544 44443 48889999998754 666654
No 224
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=39.51 E-value=61 Score=34.32 Aligned_cols=60 Identities=18% Similarity=0.067 Sum_probs=43.9
Q ss_pred CHHHHHHHHhccCCCCEE--EEEcCCChHHHHhhhhcCCceEE-----eCCCCHHHHHHHHHHHHHh
Q 007940 77 DGFKLLEHVGLEMDLPVI--MMSVDGETSRVMKGVQHGACDYL-----LKPIRMKELRNIWQHVFRK 136 (584)
Q Consensus 77 dGlELL~~Ir~~~~iPVI--vlSa~~d~~~~~~aL~~GAdDYL-----~KP~~~~eL~~aI~~vlrr 136 (584)
.|+++++++.....+||| ....-...+.+..++++||+.++ .|.-++.+....+..++..
T Consensus 184 ~~~elLkei~~~~~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~ks~dP~~~akafv~ai~~ 250 (287)
T TIGR00343 184 VPVELLLEVLKLGKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSNPEKLAKAIVEATTH 250 (287)
T ss_pred CCHHHHHHHHHhCCCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhcCCCHHHHHHHHHHHHHH
Confidence 578999998766789998 45455588999999999999985 4544566655555555443
No 225
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=39.39 E-value=92 Score=31.81 Aligned_cols=75 Identities=16% Similarity=0.073 Sum_probs=44.6
Q ss_pred CEEEEEeCCH------HHHHHHHHHHHhCCCeEEEECCHH-HHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCC
Q 007940 18 LRVLVVDDDL------AWLKILEKMLKKCSYEVTTCGLAR-DALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMD 90 (584)
Q Consensus 18 mrVLIVDDd~------~~r~~L~~lL~~~gy~V~~a~~~~-eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~ 90 (584)
||||++-... .....+...|.+.|++|....... .....+... .||+|.+-......-....+..+. ..
T Consensus 1 MkIl~~~~~~~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~~~~~~~~~~--~~diih~~~~~~~~~~~~~~~~~~--~~ 76 (365)
T cd03825 1 MKVLHLNTSDISGGAARAAYRLHRALQAAGVDSTMLVQEKKALISKIEII--NADIVHLHWIHGGFLSIEDLSKLL--DR 76 (365)
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHHHhcCCceeEEEeecchhhhChhcc--cCCEEEEEccccCccCHHHHHHHH--cC
Confidence 6888887653 466778888888898877544333 333344433 499998754333333344444432 46
Q ss_pred CCEEEE
Q 007940 91 LPVIMM 96 (584)
Q Consensus 91 iPVIvl 96 (584)
+|+|+.
T Consensus 77 ~~~v~~ 82 (365)
T cd03825 77 KPVVWT 82 (365)
T ss_pred CCEEEE
Confidence 777644
No 226
>COG0313 Predicted methyltransferases [General function prediction only]
Probab=39.35 E-value=3e+02 Score=29.07 Aligned_cols=85 Identities=19% Similarity=0.242 Sum_probs=53.0
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHH----HHHhcCCCceEEEEecCCCCC--CHHHHHHHHhccCC
Q 007940 17 GLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALS----LLRERKDGYDIVISDVNMPDM--DGFKLLEHVGLEMD 90 (584)
Q Consensus 17 gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~----~L~~~~~~pDLVIlDi~MPdm--dGlELL~~Ir~~~~ 90 (584)
..-++++||....+..|.++=-.....-....+..+... .+...+ -=.++.|..||.. .|+++++..+ ...
T Consensus 30 ~~D~iaaEDTR~t~~LL~~~~I~~~~is~h~hne~~~~~~li~~l~~g~--~valVSDAG~P~ISDPG~~LV~~a~-~~g 106 (275)
T COG0313 30 EVDVIAAEDTRVTRKLLSHLGIKTPLISYHEHNEKEKLPKLIPLLKKGK--SVALVSDAGTPLISDPGYELVRAAR-EAG 106 (275)
T ss_pred hCCEEEEeccHHHHHHHHHhCCCCceecccCCcHHHHHHHHHHHHhcCC--eEEEEecCCCCcccCccHHHHHHHH-HcC
Confidence 356899999998887766653222211111233444333 333321 3467789999986 4999999875 346
Q ss_pred CCEEEEEcCCChHH
Q 007940 91 LPVIMMSVDGETSR 104 (584)
Q Consensus 91 iPVIvlSa~~d~~~ 104 (584)
++|+.+.+.+..-.
T Consensus 107 i~V~~lPG~sA~~t 120 (275)
T COG0313 107 IRVVPLPGPSALIT 120 (275)
T ss_pred CcEEecCCccHHHH
Confidence 89998877654433
No 227
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=39.04 E-value=4.1e+02 Score=28.07 Aligned_cols=107 Identities=18% Similarity=0.191 Sum_probs=64.3
Q ss_pred CEEEEEeC---CH-HHHHHHHHHHHhCCC--eEEEEC--CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccC
Q 007940 18 LRVLVVDD---DL-AWLKILEKMLKKCSY--EVTTCG--LARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEM 89 (584)
Q Consensus 18 mrVLIVDD---d~-~~r~~L~~lL~~~gy--~V~~a~--~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~ 89 (584)
++++|+-+ +. .....++++.+..+. .|...+ ...+..+.+.. .|+.++--. ...-|+.+++.+. .
T Consensus 253 ~~l~ivG~~~~~g~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~----ad~~v~ps~-~E~~g~~~lEAma--~ 325 (405)
T TIGR03449 253 LRVIVVGGPSGSGLATPDALIELAAELGIADRVRFLPPRPPEELVHVYRA----ADVVAVPSY-NESFGLVAMEAQA--C 325 (405)
T ss_pred eEEEEEeCCCCCcchHHHHHHHHHHHcCCCceEEECCCCCHHHHHHHHHh----CCEEEECCC-CCCcChHHHHHHH--c
Confidence 56677753 11 344556666665553 344333 23444555543 467665432 2334666676653 4
Q ss_pred CCCEEEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHH
Q 007940 90 DLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFR 135 (584)
Q Consensus 90 ~iPVIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlr 135 (584)
.+|||... .+. ..+.+..|..+++..|-+.++|.+++.+++.
T Consensus 326 G~Pvi~~~-~~~---~~e~i~~~~~g~~~~~~d~~~la~~i~~~l~ 367 (405)
T TIGR03449 326 GTPVVAAR-VGG---LPVAVADGETGLLVDGHDPADWADALARLLD 367 (405)
T ss_pred CCCEEEec-CCC---cHhhhccCCceEECCCCCHHHHHHHHHHHHh
Confidence 68998643 332 2345667888999999999999999988875
No 228
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=39.03 E-value=2.5e+02 Score=29.27 Aligned_cols=101 Identities=12% Similarity=0.143 Sum_probs=62.2
Q ss_pred CCE-EEEEeCCHHHHHHHHHHHHhCCCeEE---EECCHHHHHHHHHhcCCCceEEEEecCCCCCCH---------HHHHH
Q 007940 17 GLR-VLVVDDDLAWLKILEKMLKKCSYEVT---TCGLARDALSLLRERKDGYDIVISDVNMPDMDG---------FKLLE 83 (584)
Q Consensus 17 gmr-VLIVDDd~~~r~~L~~lL~~~gy~V~---~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdG---------lELL~ 83 (584)
|.. |+|.|-...-...+...+++.|...+ .-++..+-++.+.+...+|=.++. .++..| .++++
T Consensus 119 GvdgviipDLP~ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a~gFIY~vS---~~GvTG~~~~~~~~~~~~i~ 195 (263)
T CHL00200 119 GVKGLIIPDLPYEESDYLISVCNLYNIELILLIAPTSSKSRIQKIARAAPGCIYLVS---TTGVTGLKTELDKKLKKLIE 195 (263)
T ss_pred CCeEEEecCCCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEc---CCCCCCCCccccHHHHHHHH
Confidence 444 44444445555667777888885433 223345666666654433322222 455444 34556
Q ss_pred HHhccCCCCEEEEEcCCChHHHHhhhhcCCceEEeCC
Q 007940 84 HVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKP 120 (584)
Q Consensus 84 ~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~KP 120 (584)
++|...++||.+=-+-.+.+.+.++..+|||+.++-.
T Consensus 196 ~ir~~t~~Pi~vGFGI~~~e~~~~~~~~GADGvVVGS 232 (263)
T CHL00200 196 TIKKMTNKPIILGFGISTSEQIKQIKGWNINGIVIGS 232 (263)
T ss_pred HHHHhcCCCEEEECCcCCHHHHHHHHhcCCCEEEECH
Confidence 6666668898864445667888888999999999874
No 229
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=38.95 E-value=2.5e+02 Score=28.70 Aligned_cols=40 Identities=23% Similarity=0.326 Sum_probs=33.1
Q ss_pred HHHHHHHhccCCCCEEEEEcCCChHHHHhhhhcC-CceEEe
Q 007940 79 FKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHG-ACDYLL 118 (584)
Q Consensus 79 lELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~G-AdDYL~ 118 (584)
++++++++...++|||..-.-.+.+.+.+++..| |+..+.
T Consensus 188 ~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g~~dgv~~ 228 (254)
T TIGR00735 188 LELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKGKADAALA 228 (254)
T ss_pred HHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCcceeeE
Confidence 6788888767789999888888999999999988 887543
No 230
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=38.83 E-value=82 Score=30.51 Aligned_cols=82 Identities=11% Similarity=0.095 Sum_probs=43.8
Q ss_pred HHHHHhCCCeEEE---ECCHHHHHHHHHhcCCCceEEEEecCCCCCCH-------HHHHHHHhcc-----CCCCEEEEEc
Q 007940 34 EKMLKKCSYEVTT---CGLARDALSLLRERKDGYDIVISDVNMPDMDG-------FKLLEHVGLE-----MDLPVIMMSV 98 (584)
Q Consensus 34 ~~lL~~~gy~V~~---a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdG-------lELL~~Ir~~-----~~iPVIvlSa 98 (584)
.+.+++.|..+.. ..+..+.++.+.. .+|.|+++-.-|+..| ++.+++++.. ..+|+++..
T Consensus 97 ~~~~~~~g~~~~~~~~~~t~~e~~~~~~~---~~d~i~~~~~~~g~tg~~~~~~~~~~i~~i~~~~~~~~~~~~i~v~G- 172 (210)
T TIGR01163 97 LQLIKDLGAKAGIVLNPATPLEFLEYVLP---DVDLVLLMSVNPGFGGQKFIPDTLEKIREVRKMIDENGLSILIEVDG- 172 (210)
T ss_pred HHHHHHcCCcEEEEECCCCCHHHHHHHHh---hCCEEEEEEEcCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEEC-
Confidence 3445555544332 2234555555432 2577776654454433 3444444321 235665443
Q ss_pred CCChHHHHhhhhcCCceEEeC
Q 007940 99 DGETSRVMKGVQHGACDYLLK 119 (584)
Q Consensus 99 ~~d~~~~~~aL~~GAdDYL~K 119 (584)
--..+.+.++++.||+.+++-
T Consensus 173 GI~~env~~l~~~gad~iivg 193 (210)
T TIGR01163 173 GVNDDNARELAEAGADILVAG 193 (210)
T ss_pred CcCHHHHHHHHHcCCCEEEEC
Confidence 345677888889999987654
No 231
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=38.80 E-value=3e+02 Score=28.48 Aligned_cols=103 Identities=18% Similarity=0.227 Sum_probs=61.3
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhCCCeEEEEC--CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCCEEE
Q 007940 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTCG--LARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIM 95 (584)
Q Consensus 18 mrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~--~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVIv 95 (584)
.+++|+.+.+.. +.+++ ...-.|...+ +.++..+.+.. .|++++-.. +.-|+-+++.+. ..+|||.
T Consensus 222 ~~l~ivG~g~~~-~~l~~---~~~~~V~~~g~~~~~~~~~~~~~----ad~~v~ps~--e~~g~~~~Eama--~G~Pvi~ 289 (351)
T cd03804 222 KRLVVIGDGPEL-DRLRA---KAGPNVTFLGRVSDEELRDLYAR----ARAFLFPAE--EDFGIVPVEAMA--SGTPVIA 289 (351)
T ss_pred CcEEEEECChhH-HHHHh---hcCCCEEEecCCCHHHHHHHHHh----CCEEEECCc--CCCCchHHHHHH--cCCCEEE
Confidence 567777776543 23333 1122343333 34455566654 467665433 333555566553 5689987
Q ss_pred EEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 007940 96 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 136 (584)
Q Consensus 96 lSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrr 136 (584)
.. .+. ..+.+..|..+++..|-+.++|.+++..++..
T Consensus 290 ~~-~~~---~~e~i~~~~~G~~~~~~~~~~la~~i~~l~~~ 326 (351)
T cd03804 290 YG-KGG---ALETVIDGVTGILFEEQTVESLAAAVERFEKN 326 (351)
T ss_pred eC-CCC---CcceeeCCCCEEEeCCCCHHHHHHHHHHHHhC
Confidence 53 322 23456667789999999999999999888754
No 232
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=38.74 E-value=3.9e+02 Score=26.25 Aligned_cols=66 Identities=23% Similarity=0.321 Sum_probs=40.9
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhccCCCCEEEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 007940 64 YDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 136 (584)
Q Consensus 64 pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrr 136 (584)
.|++|+-... +.-|..+++.+. ..+|||+... .. ..+.+..+-.+++..+.+.+++.+++.+++..
T Consensus 276 ~di~i~~~~~-~~~~~~~~Ea~~--~g~pvI~~~~-~~---~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~ 341 (374)
T cd03801 276 ADVFVLPSLY-EGFGLVLLEAMA--AGLPVVASDV-GG---IPEVVEDGETGLLVPPGDPEALAEAILRLLDD 341 (374)
T ss_pred cCEEEecchh-ccccchHHHHHH--cCCcEEEeCC-CC---hhHHhcCCcceEEeCCCCHHHHHHHHHHHHcC
Confidence 3566543322 233455555553 4678775432 22 23445557788999999999999999887643
No 233
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=38.71 E-value=1.4e+02 Score=30.14 Aligned_cols=67 Identities=15% Similarity=0.207 Sum_probs=48.9
Q ss_pred HHHHHHHHHhcCCCceEEEEecCCCCC-CH--HHHHHHHhccCCCCEEEEEcCCChHHHHhhhhcCCceEEe
Q 007940 50 ARDALSLLRERKDGYDIVISDVNMPDM-DG--FKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLL 118 (584)
Q Consensus 50 ~~eAL~~L~~~~~~pDLVIlDi~MPdm-dG--lELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~ 118 (584)
..+..+.+.... ..+|++|+.--++ .| +++++++.....+|||+=-+-...+.+.++...||+..++
T Consensus 143 ~~~~~~~~~~~g--~~ii~tdI~~dGt~~G~d~eli~~i~~~~~~pvia~GGi~s~ed~~~l~~~Ga~~viv 212 (221)
T TIGR00734 143 LEEVRDFLNSFD--YGLIVLDIHSVGTMKGPNLELLTKTLELSEHPVMLGGGISGVEDLELLKEMGVSAVLV 212 (221)
T ss_pred HHHHHHHHHhcC--CEEEEEECCccccCCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 344555554332 4689999976443 33 7889998777789998777778888888888899998875
No 234
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=38.27 E-value=1.7e+02 Score=30.91 Aligned_cols=94 Identities=12% Similarity=0.021 Sum_probs=55.7
Q ss_pred EEEEEeCCHHHHHHHHHH----HHhCCC---eEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCC
Q 007940 19 RVLVVDDDLAWLKILEKM----LKKCSY---EVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGL-EMD 90 (584)
Q Consensus 19 rVLIVDDd~~~r~~L~~l----L~~~gy---~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~-~~~ 90 (584)
.|||-|.|-...-.+... =+..++ ..+.+.+.++|.+++.. ++|+|.+|-.-| .+--++++.++. .++
T Consensus 168 ~ilikdNHi~~~g~i~~av~~~r~~~~~~~~I~VEv~tleea~eA~~~---GaD~I~LDn~~~-e~l~~av~~~~~~~~~ 243 (288)
T PRK07428 168 AVMIKDNHIQAAGGIGEAITRIRQRIPYPLTIEVETETLEQVQEALEY---GADIIMLDNMPV-DLMQQAVQLIRQQNPR 243 (288)
T ss_pred eeeecHHHHHHhCCHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHc---CCCEEEECCCCH-HHHHHHHHHHHhcCCC
Confidence 367766664444333333 333442 23467889999998863 489999993222 111222333332 344
Q ss_pred CCEEEEEcCCChHHHHhhhhcCCceEE
Q 007940 91 LPVIMMSVDGETSRVMKGVQHGACDYL 117 (584)
Q Consensus 91 iPVIvlSa~~d~~~~~~aL~~GAdDYL 117 (584)
+| |..++--+.+.+.+....|++...
T Consensus 244 i~-leAsGGIt~~ni~~ya~tGvD~Is 269 (288)
T PRK07428 244 VK-IEASGNITLETIRAVAETGVDYIS 269 (288)
T ss_pred eE-EEEECCCCHHHHHHHHHcCCCEEE
Confidence 54 556666778888888899988654
No 235
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=38.09 E-value=1.5e+02 Score=30.90 Aligned_cols=80 Identities=16% Similarity=0.205 Sum_probs=51.8
Q ss_pred hCCCeEEEECCH-----HHHH---H-HHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCCEEEEEcCCChHHHHhhh
Q 007940 39 KCSYEVTTCGLA-----RDAL---S-LLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGV 109 (584)
Q Consensus 39 ~~gy~V~~a~~~-----~eAL---~-~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL 109 (584)
+.+..+.++++| +++- . +++++ .||++|+=---|...|-.-.|.+-....+|.|+++....... .+++
T Consensus 29 RedI~vrv~gsGaKm~pe~~~~~~~~~~~~~--~pDf~i~isPN~a~PGP~~ARE~l~~~~iP~IvI~D~p~~K~-~d~l 105 (277)
T PRK00994 29 REDIDVRVVGSGAKMGPEEVEEVVKKMLEEW--KPDFVIVISPNPAAPGPKKAREILKAAGIPCIVIGDAPGKKV-KDAM 105 (277)
T ss_pred ccCceEEEeccCCCCCHHHHHHHHHHHHHhh--CCCEEEEECCCCCCCCchHHHHHHHhcCCCEEEEcCCCccch-HHHH
Confidence 345777777765 2332 2 33444 489988855455566666667765567889999997765543 3777
Q ss_pred hcCCceEEeCCC
Q 007940 110 QHGACDYLLKPI 121 (584)
Q Consensus 110 ~~GAdDYL~KP~ 121 (584)
+..-.+||+-+.
T Consensus 106 ~~~g~GYIivk~ 117 (277)
T PRK00994 106 EEQGLGYIIVKA 117 (277)
T ss_pred HhcCCcEEEEec
Confidence 777777875543
No 236
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=38.03 E-value=2.4e+02 Score=30.48 Aligned_cols=63 Identities=16% Similarity=0.146 Sum_probs=42.0
Q ss_pred CEEEEEeCCHHHH-----HHHHHHHHhCCCeEEEECC---------HHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHH
Q 007940 18 LRVLVVDDDLAWL-----KILEKMLKKCSYEVTTCGL---------ARDALSLLRERKDGYDIVISDVNMPDMDGFKLLE 83 (584)
Q Consensus 18 mrVLIVDDd~~~r-----~~L~~lL~~~gy~V~~a~~---------~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~ 83 (584)
-|+|||-|..... +.+...|+..|+.+..+.. ..++.+.+++.. +|+||- .-+..-+++.|
T Consensus 24 ~r~livt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~--~D~IIa---vGGGSviD~AK 98 (375)
T cd08179 24 KKAFIVTGGGSMKKFGFLDKVEAYLKEAGIEVEVFEGVEPDPSVETVLKGAEAMREFE--PDWIIA---LGGGSPIDAAK 98 (375)
T ss_pred CeEEEEeCchHHHhCChHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcC--CCEEEE---eCCccHHHHHH
Confidence 4899998876544 6788888887877665542 356666776644 898874 44555555555
Q ss_pred HH
Q 007940 84 HV 85 (584)
Q Consensus 84 ~I 85 (584)
.+
T Consensus 99 ~i 100 (375)
T cd08179 99 AM 100 (375)
T ss_pred HH
Confidence 44
No 237
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=37.94 E-value=1.6e+02 Score=29.72 Aligned_cols=56 Identities=21% Similarity=0.255 Sum_probs=42.9
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCCe--EE-EECCHHHHHHHHHhc--CCCceEEEEecC
Q 007940 17 GLRVLVVDDDLAWLKILEKMLKKCSYE--VT-TCGLARDALSLLRER--KDGYDIVISDVN 72 (584)
Q Consensus 17 gmrVLIVDDd~~~r~~L~~lL~~~gy~--V~-~a~~~~eAL~~L~~~--~~~pDLVIlDi~ 72 (584)
+-+|.-+|-++...+..++.+++.|+. +. ..+++.+.+..+... ...||+|++|..
T Consensus 93 ~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~VfiDa~ 153 (234)
T PLN02781 93 DGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDFAFVDAD 153 (234)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEEEECCC
Confidence 449999999999999999999988853 32 556777777766432 235999999975
No 238
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=37.84 E-value=3.3e+02 Score=28.15 Aligned_cols=57 Identities=14% Similarity=0.209 Sum_probs=39.6
Q ss_pred HHHHHHHhccCCCCEEEEEcCCChHHHHhhhhcCCceEE------eCCCCHHHHHHHHHHHHH
Q 007940 79 FKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYL------LKPIRMKELRNIWQHVFR 135 (584)
Q Consensus 79 lELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL------~KP~~~~eL~~aI~~vlr 135 (584)
+++++.++...++|||....-.+.+.+.+++.+||+..- .-|.-..++.+-+.+.+.
T Consensus 220 ~~~i~~i~~~~~ipii~~GGI~~~~da~~~l~~GAd~V~igra~l~~p~~~~~i~~~l~~~~~ 282 (296)
T cd04740 220 LRMVYQVYKAVEIPIIGVGGIASGEDALEFLMAGASAVQVGTANFVDPEAFKEIIEGLEAYLD 282 (296)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhhcChHHHHHHHHHHHHHHH
Confidence 477777776668999988887888999999999987542 235444444444444443
No 239
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=37.82 E-value=40 Score=32.76 Aligned_cols=74 Identities=15% Similarity=0.210 Sum_probs=47.0
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecC--CCCCCH--HHHHHHHhccCCCCEEE
Q 007940 20 VLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVN--MPDMDG--FKLLEHVGLEMDLPVIM 95 (584)
Q Consensus 20 VLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~--MPdmdG--lELL~~Ir~~~~iPVIv 95 (584)
|||||..-..-..|.+.|+..|++|.++.+..--++.+... .||.||+-=. -|..++ ..+++.+ ...+||+=
T Consensus 2 il~id~~dsf~~nl~~~l~~~~~~~~v~~~~~~~~~~~~~~--~~~~iilsgGP~~~~~~~~~~~~i~~~--~~~~PiLG 77 (191)
T PRK06774 2 LLLIDNYDSFTYNLYQYFCELGTEVMVKRNDELQLTDIEQL--APSHLVISPGPCTPNEAGISLAVIRHF--ADKLPILG 77 (191)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHhc--CCCeEEEcCCCCChHhCCCchHHHHHh--cCCCCEEE
Confidence 89999999999999999999998888766542223334332 2777776321 121222 3344433 34789887
Q ss_pred EE
Q 007940 96 MS 97 (584)
Q Consensus 96 lS 97 (584)
++
T Consensus 78 IC 79 (191)
T PRK06774 78 VC 79 (191)
T ss_pred EC
Confidence 75
No 240
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=37.80 E-value=2e+02 Score=30.85 Aligned_cols=56 Identities=18% Similarity=0.272 Sum_probs=39.6
Q ss_pred HHHHHHhccC--CCCEEEEEcCCChHHHHhhhhcCCceE------EeC-CCCHHHHHHHHHHHHH
Q 007940 80 KLLEHVGLEM--DLPVIMMSVDGETSRVMKGVQHGACDY------LLK-PIRMKELRNIWQHVFR 135 (584)
Q Consensus 80 ELL~~Ir~~~--~iPVIvlSa~~d~~~~~~aL~~GAdDY------L~K-P~~~~eL~~aI~~vlr 135 (584)
+.++.++... .+|||.+.+-.+.+.+.+.+.+||+.. +.+ |.-..++.+-+++.+.
T Consensus 277 ~~v~~l~~~~~~~ipIig~GGI~s~eda~e~l~aGAd~V~v~~~~~~~gP~~~~~i~~~L~~~l~ 341 (344)
T PRK05286 277 EVIRRLYKELGGRLPIIGVGGIDSAEDAYEKIRAGASLVQIYSGLIYEGPGLVKEIVRGLARLLR 341 (344)
T ss_pred HHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCCHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 3555565443 789999988899999999999998853 344 6666666665555554
No 241
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=37.60 E-value=3.9e+02 Score=25.90 Aligned_cols=86 Identities=15% Similarity=0.054 Sum_probs=49.7
Q ss_pred HHHHHHHHHhCCCeEEEE-CCH----HHHHHHHHhcCCCceEEEEecCCC----CCCHHHHHHHHhccCCCCEEEEEcCC
Q 007940 30 LKILEKMLKKCSYEVTTC-GLA----RDALSLLRERKDGYDIVISDVNMP----DMDGFKLLEHVGLEMDLPVIMMSVDG 100 (584)
Q Consensus 30 r~~L~~lL~~~gy~V~~a-~~~----~eAL~~L~~~~~~pDLVIlDi~MP----dmdGlELL~~Ir~~~~iPVIvlSa~~ 100 (584)
...+.+..++.|..+... .+. +++..++. . .+|+|-+.-.-. ...+++.++.++.....+.|++.+--
T Consensus 91 ~~~~i~~~~~~g~~~~~~~~~~~t~~~~~~~~~~-~--g~d~v~~~pg~~~~~~~~~~~~~i~~l~~~~~~~~i~v~GGI 167 (206)
T TIGR03128 91 IKGAVKAAKKHGKEVQVDLINVKDKVKRAKELKE-L--GADYIGVHTGLDEQAKGQNPFEDLQTILKLVKEARVAVAGGI 167 (206)
T ss_pred HHHHHHHHHHcCCEEEEEecCCCChHHHHHHHHH-c--CCCEEEEcCCcCcccCCCCCHHHHHHHHHhcCCCcEEEECCc
Confidence 345555667778776533 232 34444433 2 378887642110 11245556665433333456666777
Q ss_pred ChHHHHhhhhcCCceEEe
Q 007940 101 ETSRVMKGVQHGACDYLL 118 (584)
Q Consensus 101 d~~~~~~aL~~GAdDYL~ 118 (584)
..+.+.+++++||+.++.
T Consensus 168 ~~~n~~~~~~~Ga~~v~v 185 (206)
T TIGR03128 168 NLDTIPDVIKLGPDIVIV 185 (206)
T ss_pred CHHHHHHHHHcCCCEEEE
Confidence 778888999999997765
No 242
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=37.55 E-value=3.3e+02 Score=28.33 Aligned_cols=54 Identities=22% Similarity=0.356 Sum_probs=37.6
Q ss_pred HHHHHHHHhccCCCCEEEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 007940 78 GFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 136 (584)
Q Consensus 78 GlELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrr 136 (584)
|+.+++.+ ...+|||..-.... ..+.+..|..+|+..|-+.++|..++..++..
T Consensus 292 ~~~~lEAm--a~G~PvI~~~~~~g---~~~~v~~~~~G~lv~~~d~~~la~~i~~ll~~ 345 (372)
T cd04949 292 GLSLMEAL--SHGLPVISYDVNYG---PSEIIEDGENGYLVPKGDIEALAEAIIELLND 345 (372)
T ss_pred ChHHHHHH--hCCCCEEEecCCCC---cHHHcccCCCceEeCCCcHHHHHHHHHHHHcC
Confidence 55556555 35688886432211 23446678899999999999999999988753
No 243
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=37.48 E-value=4.3e+02 Score=27.97 Aligned_cols=91 Identities=19% Similarity=0.095 Sum_probs=57.9
Q ss_pred EEEEEeCCHHHH--------HHHHHHHHhCCC---eEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc
Q 007940 19 RVLVVDDDLAWL--------KILEKMLKKCSY---EVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGL 87 (584)
Q Consensus 19 rVLIVDDd~~~r--------~~L~~lL~~~gy---~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~ 87 (584)
.|||-|.|-... +.++.+=+..++ ..+.+.+.+++.+++.. ++|+|++|=.-|. +--++++.++
T Consensus 161 ~vLikdNHi~~~~~g~~~i~~av~~~r~~~~~~~kIeVEv~slee~~ea~~~---gaDiImLDn~s~e-~l~~av~~~~- 235 (281)
T PRK06543 161 AVMAKDNHLAALAAQGLDLTEALRHVRAQLGHTTHVEVEVDRLDQIEPVLAA---GVDTIMLDNFSLD-DLREGVELVD- 235 (281)
T ss_pred eEEEeHHHHHHHhCCchHHHHHHHHHHHhCCCCCcEEEEeCCHHHHHHHHhc---CCCEEEECCCCHH-HHHHHHHHhC-
Confidence 478877776542 333333344443 34578899999998863 3899999953332 2233333332
Q ss_pred cCCCCEEEEEcCCChHHHHhhhhcCCceE
Q 007940 88 EMDLPVIMMSVDGETSRVMKGVQHGACDY 116 (584)
Q Consensus 88 ~~~iPVIvlSa~~d~~~~~~aL~~GAdDY 116 (584)
....|-.|+.-+.+.+.+....|+|-.
T Consensus 236 --~~~~leaSGgI~~~ni~~yA~tGVD~I 262 (281)
T PRK06543 236 --GRAIVEASGNVNLNTVGAIASTGVDVI 262 (281)
T ss_pred --CCeEEEEECCCCHHHHHHHHhcCCCEE
Confidence 233677888888888888888887643
No 244
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=37.45 E-value=4.7e+02 Score=27.64 Aligned_cols=104 Identities=21% Similarity=0.258 Sum_probs=48.2
Q ss_pred CEEEEE-eCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCCEEEE
Q 007940 18 LRVLVV-DDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMM 96 (584)
Q Consensus 18 mrVLIV-DDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVIvl 96 (584)
++++++ ..+...++.+++..+..+-.|...+...+..+++.. .|+++.. + -|+.+++.+. ..+|+|+.
T Consensus 231 ~~~viv~G~~~~~~~~l~~~~~~~~~~v~~~g~~~~~~~l~~~----aD~~v~~---~--gg~t~~EA~a--~g~PvI~~ 299 (380)
T PRK13609 231 LQVVVVCGKNEALKQSLEDLQETNPDALKVFGYVENIDELFRV----TSCMITK---P--GGITLSEAAA--LGVPVILY 299 (380)
T ss_pred cEEEEEeCCCHHHHHHHHHHHhcCCCcEEEEechhhHHHHHHh----ccEEEeC---C--CchHHHHHHH--hCCCEEEC
Confidence 444443 334444455555544433223333333332233332 4666542 2 2555555542 46787764
Q ss_pred EcCCC--hHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHH
Q 007940 97 SVDGE--TSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFR 135 (584)
Q Consensus 97 Sa~~d--~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlr 135 (584)
..... .+.+....+.|+ ...+.+.++|.+++.+++.
T Consensus 300 ~~~~g~~~~n~~~~~~~G~---~~~~~~~~~l~~~i~~ll~ 337 (380)
T PRK13609 300 KPVPGQEKENAMYFERKGA---AVVIRDDEEVFAKTEALLQ 337 (380)
T ss_pred CCCCCcchHHHHHHHhCCc---EEEECCHHHHHHHHHHHHC
Confidence 32221 111112223443 2334577888888877764
No 245
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=37.06 E-value=2.6e+02 Score=27.01 Aligned_cols=54 Identities=19% Similarity=0.239 Sum_probs=36.8
Q ss_pred CHHHHHHHHhccCCCCE-EEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHH
Q 007940 77 DGFKLLEHVGLEMDLPV-IMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIW 130 (584)
Q Consensus 77 dGlELL~~Ir~~~~iPV-IvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI 130 (584)
-|++.++.|+.....|+ +.+........+..+.+.||+..++......+....+
T Consensus 43 ~~~~~v~~i~~~~~~~v~v~lm~~~~~~~~~~~~~~gadgv~vh~~~~~~~~~~~ 97 (210)
T TIGR01163 43 FGPPVLEALRKYTDLPIDVHLMVENPDRYIEDFAEAGADIITVHPEASEHIHRLL 97 (210)
T ss_pred cCHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEEccCCchhHHHHH
Confidence 57889999986666776 3244445567778888999999887665444444433
No 246
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=36.96 E-value=82 Score=33.89 Aligned_cols=65 Identities=28% Similarity=0.423 Sum_probs=50.6
Q ss_pred CCHHHHHHHHHh-cCCCceEEEEecCCCCCCHHHHHHHHhccCCCCEEEEEcCCChHHHHhhhhcCCce
Q 007940 48 GLARDALSLLRE-RKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACD 115 (584)
Q Consensus 48 ~~~~eAL~~L~~-~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdD 115 (584)
.+..||+..+.. ..++.|+|++= |.+.=+++++.++...++||...-..++..++..|.+.|..|
T Consensus 225 ~n~~eAlre~~~D~~EGAD~lMVK---Pal~YLDIi~~~k~~~~~PvaaYqVSGEYaMikaAa~~G~~D 290 (323)
T PRK09283 225 ANRREALREVALDIEEGADMVMVK---PALPYLDIIRRVKDEFNLPVAAYQVSGEYAMIKAAAQNGWID 290 (323)
T ss_pred CCHHHHHHHHHhhHHhCCCEEEEc---CCchHHHHHHHHHhcCCCCEEEEEccHHHHHHHHHHHcCCCC
Confidence 356777775543 34568999885 666678888999887889999998889888888888888765
No 247
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=36.90 E-value=2.1e+02 Score=31.59 Aligned_cols=105 Identities=17% Similarity=0.305 Sum_probs=65.3
Q ss_pred EeCCHHHHHHHHHHHHhCCCe----EEEEC-----------------------CHHHHHHHHHhcCCCceEEEEecCCCC
Q 007940 23 VDDDLAWLKILEKMLKKCSYE----VTTCG-----------------------LARDALSLLRERKDGYDIVISDVNMPD 75 (584)
Q Consensus 23 VDDd~~~r~~L~~lL~~~gy~----V~~a~-----------------------~~~eAL~~L~~~~~~pDLVIlDi~MPd 75 (584)
++++....+.+++.+++.||. +..+- +..++++.++.....++++.+.--++.
T Consensus 209 ~~~d~~~l~~i~eAi~~~g~~~G~dv~i~lD~aas~~~~~~~y~~~~~~~~~~t~~eai~~~~~l~e~~~i~~iEdPl~~ 288 (408)
T cd03313 209 LSSNEEALDLLVEAIEKAGYEPGKKIAIALDVAASEFYDEGKYVYDSDEGKKLTSEELIDYYKELVKKYPIVSIEDPFDE 288 (408)
T ss_pred CCChHHHHHHHHHHHHHhcCCCCCeEEEEEehhhhhhcccCcceeccCCCcccCHHHHHHHHHHHHHhCCcEEEEeCCCC
Confidence 367778888899999887654 22222 337777766653233778777666655
Q ss_pred CCHHHHHHHHhccC--CCCEEEEEcC---CChHHHHhhhhcCCceE-EeCCCCHHHHHHHH
Q 007940 76 MDGFKLLEHVGLEM--DLPVIMMSVD---GETSRVMKGVQHGACDY-LLKPIRMKELRNIW 130 (584)
Q Consensus 76 mdGlELL~~Ir~~~--~iPVIvlSa~---~d~~~~~~aL~~GAdDY-L~KP~~~~eL~~aI 130 (584)
.| ++-.++|+... .+|| +... .....+.++++.|+.++ ++||-...-|-.++
T Consensus 289 ~D-~eg~~~L~~~~g~~ipi--~gdE~~~~~~~~~~~~i~~~a~d~v~ik~~~iGGite~~ 346 (408)
T cd03313 289 DD-WEGWAKLTAKLGDKIQI--VGDDLFVTNPERLKKGIEKKAANALLIKVNQIGTLTETI 346 (408)
T ss_pred cC-HHHHHHHHHhcCCCCeE--EcCCcccCCHHHHHHHHHhCCCCEEEEcccccCCHHHHH
Confidence 44 45555565443 4444 3343 25778888999888765 67988754444433
No 248
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=36.80 E-value=78 Score=33.63 Aligned_cols=60 Identities=15% Similarity=0.077 Sum_probs=43.8
Q ss_pred CHHHHHHHHhccCCCCEE--EEEcCCChHHHHhhhhcCCceEE-----eCCCCHHHHHHHHHHHHHh
Q 007940 77 DGFKLLEHVGLEMDLPVI--MMSVDGETSRVMKGVQHGACDYL-----LKPIRMKELRNIWQHVFRK 136 (584)
Q Consensus 77 dGlELL~~Ir~~~~iPVI--vlSa~~d~~~~~~aL~~GAdDYL-----~KP~~~~eL~~aI~~vlrr 136 (584)
.++++++++.....+||| ....-...+.+..++++||+.++ .|.-++.+....+..++..
T Consensus 190 ~~~elL~ei~~~~~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~ks~dP~~~akafv~ai~~ 256 (293)
T PRK04180 190 APYELVKEVAELGRLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFKSGDPEKRARAIVEATTH 256 (293)
T ss_pred CCHHHHHHHHHhCCCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhcCCCHHHHHHHHHHHHHH
Confidence 478889998776789998 55555588999999999999975 3444666666666555543
No 249
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=36.75 E-value=4.9e+02 Score=26.77 Aligned_cols=56 Identities=11% Similarity=0.208 Sum_probs=32.3
Q ss_pred HHHHHHHHhccCCCCEEEEEcC----CChHHHHhhhhcCCceEEeCCC--CHHHHHHHHHHHHH
Q 007940 78 GFKLLEHVGLEMDLPVIMMSVD----GETSRVMKGVQHGACDYLLKPI--RMKELRNIWQHVFR 135 (584)
Q Consensus 78 GlELL~~Ir~~~~iPVIvlSa~----~d~~~~~~aL~~GAdDYL~KP~--~~~eL~~aI~~vlr 135 (584)
+..+++.+ ...+|+|++... .......+.+..+-.+++..+- +.++|.+++..++.
T Consensus 262 ~~t~~Eam--~~G~Pvv~~~~~~~~~~~~~~~~~~l~~~g~g~~v~~~~~~~~~l~~~i~~ll~ 323 (350)
T cd03785 262 ASTVAELA--ALGLPAILIPLPYAADDHQTANARALVKAGAAVLIPQEELTPERLAAALLELLS 323 (350)
T ss_pred HhHHHHHH--HhCCCEEEeecCCCCCCcHHHhHHHHHhCCCEEEEecCCCCHHHHHHHHHHHhc
Confidence 34444544 357898875422 1111122333333457888775 89999999888764
No 250
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=36.74 E-value=2e+02 Score=27.92 Aligned_cols=77 Identities=9% Similarity=0.005 Sum_probs=53.0
Q ss_pred HHhCCCe-EEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc-CCCCEEEEEcCCChHHHHhhhhcCCc
Q 007940 37 LKKCSYE-VTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLE-MDLPVIMMSVDGETSRVMKGVQHGAC 114 (584)
Q Consensus 37 L~~~gy~-V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~-~~iPVIvlSa~~d~~~~~~aL~~GAd 114 (584)
.+..+.. +..+.+..|+.++++. ++|.|-++- .+.. |.++++.++.. +.+|++.+-+- +.+.+.+.++.||+
T Consensus 93 ~~~~~~~~i~gv~t~~e~~~A~~~---Gad~i~~~p-~~~~-g~~~~~~l~~~~~~~p~~a~GGI-~~~n~~~~~~~G~~ 166 (190)
T cd00452 93 ANRAGIPLLPGVATPTEIMQALEL---GADIVKLFP-AEAV-GPAYIKALKGPFPQVRFMPTGGV-SLDNAAEWLAAGVV 166 (190)
T ss_pred HHHcCCcEECCcCCHHHHHHHHHC---CCCEEEEcC-Cccc-CHHHHHHHHhhCCCCeEEEeCCC-CHHHHHHHHHCCCE
Confidence 3334433 3355688888888753 479998853 3333 89999998654 46887766544 77888999999988
Q ss_pred eEEeC
Q 007940 115 DYLLK 119 (584)
Q Consensus 115 DYL~K 119 (584)
....-
T Consensus 167 ~v~v~ 171 (190)
T cd00452 167 AVGGG 171 (190)
T ss_pred EEEEc
Confidence 76544
No 251
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=36.63 E-value=5.6e+02 Score=27.83 Aligned_cols=107 Identities=15% Similarity=0.260 Sum_probs=61.2
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhCCC--eEEEEC--CHHHHHHHHHhcCCCceEEEEecCC-C--CCCH--HHHHHHHhcc
Q 007940 18 LRVLVVDDDLAWLKILEKMLKKCSY--EVTTCG--LARDALSLLRERKDGYDIVISDVNM-P--DMDG--FKLLEHVGLE 88 (584)
Q Consensus 18 mrVLIVDDd~~~r~~L~~lL~~~gy--~V~~a~--~~~eAL~~L~~~~~~pDLVIlDi~M-P--dmdG--lELL~~Ir~~ 88 (584)
+++.||-+-+. ++.+++.+++.|. .|...+ +..+..+.+.. .|+.++=-.. + +++| ..+++.+.
T Consensus 254 ~~l~ivG~G~~-~~~l~~~~~~~~l~~~V~~~G~~~~~el~~~l~~----aDv~v~pS~~~~~g~~Eg~p~~llEAma-- 326 (406)
T PRK15427 254 FRYRILGIGPW-ERRLRTLIEQYQLEDVVEMPGFKPSHEVKAMLDD----ADVFLLPSVTGADGDMEGIPVALMEAMA-- 326 (406)
T ss_pred EEEEEEECchh-HHHHHHHHHHcCCCCeEEEeCCCCHHHHHHHHHh----CCEEEECCccCCCCCccCccHHHHHHHh--
Confidence 45555655442 3445555555442 233222 22344444443 4666653221 1 1244 44566553
Q ss_pred CCCCEEEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHH
Q 007940 89 MDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFR 135 (584)
Q Consensus 89 ~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlr 135 (584)
..+|||. |..+. +.+.+..|..+++..|-+.++|.+++.+++.
T Consensus 327 ~G~PVI~-t~~~g---~~E~v~~~~~G~lv~~~d~~~la~ai~~l~~ 369 (406)
T PRK15427 327 VGIPVVS-TLHSG---IPELVEADKSGWLVPENDAQALAQRLAAFSQ 369 (406)
T ss_pred CCCCEEE-eCCCC---chhhhcCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 5688875 33333 3456777889999999999999999998875
No 252
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=36.61 E-value=4.5e+02 Score=29.03 Aligned_cols=102 Identities=19% Similarity=0.185 Sum_probs=60.7
Q ss_pred HHHHHHHhCCCeEEE----ECCHHHHHHHHHhcCCCceEEEEecC----CCCCCHHHHHHHHhccCCCCEEEEEcCCChH
Q 007940 32 ILEKMLKKCSYEVTT----CGLARDALSLLRERKDGYDIVISDVN----MPDMDGFKLLEHVGLEMDLPVIMMSVDGETS 103 (584)
Q Consensus 32 ~L~~lL~~~gy~V~~----a~~~~eAL~~L~~~~~~pDLVIlDi~----MPdmdGlELL~~Ir~~~~iPVIvlSa~~d~~ 103 (584)
.+.+..++.|..+.. +.+..+.+..+.+ ...|.|.+... .....+++.+++++...++||++..+- ..+
T Consensus 98 ~~i~~a~~~G~~~~~g~~s~~t~~e~~~~a~~--~GaD~I~~~pg~~~~~~~~~~~~~l~~l~~~~~iPI~a~GGI-~~~ 174 (430)
T PRK07028 98 DAVRAARKYGVRLMADLINVPDPVKRAVELEE--LGVDYINVHVGIDQQMLGKDPLELLKEVSEEVSIPIAVAGGL-DAE 174 (430)
T ss_pred HHHHHHHHcCCEEEEEecCCCCHHHHHHHHHh--cCCCEEEEEeccchhhcCCChHHHHHHHHhhCCCcEEEECCC-CHH
Confidence 344445556755543 2233333333333 23788866532 122466788888876556898776544 567
Q ss_pred HHHhhhhcCCceEE-----eCCCCHHHHHHHHHHHHHh
Q 007940 104 RVMKGVQHGACDYL-----LKPIRMKELRNIWQHVFRK 136 (584)
Q Consensus 104 ~~~~aL~~GAdDYL-----~KP~~~~eL~~aI~~vlrr 136 (584)
.+.+++..||+.++ .+.-++.+..+.++..+++
T Consensus 175 n~~~~l~aGAdgv~vGsaI~~~~d~~~~~~~l~~~i~~ 212 (430)
T PRK07028 175 TAAKAVAAGADIVIVGGNIIKSADVTEAARKIREAIDS 212 (430)
T ss_pred HHHHHHHcCCCEEEEChHHcCCCCHHHHHHHHHHHHhc
Confidence 78899999999664 5555666666666655543
No 253
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=36.37 E-value=4e+02 Score=26.61 Aligned_cols=78 Identities=15% Similarity=0.174 Sum_probs=50.4
Q ss_pred CHHHHHHHHHhcCCCce-EEEEecCCC---CCCHHHHHHHHhccCCCCEEEEEcCCChHHHHhhhhcCCceEEe------
Q 007940 49 LARDALSLLRERKDGYD-IVISDVNMP---DMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLL------ 118 (584)
Q Consensus 49 ~~~eAL~~L~~~~~~pD-LVIlDi~MP---dmdGlELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~------ 118 (584)
+..+....+... +++ +++.|+..- ....+++++.+.....+|||+-..-.+.+.+.+++..||+..++
T Consensus 150 ~~~~~~~~~~~~--G~~~i~~~~~~~~g~~~g~~~~~i~~i~~~~~iPvia~GGI~~~~di~~~~~~Ga~gv~vgsa~~~ 227 (241)
T PRK13585 150 TPVEAAKRFEEL--GAGSILFTNVDVEGLLEGVNTEPVKELVDSVDIPVIASGGVTTLDDLRALKEAGAAGVVVGSALYK 227 (241)
T ss_pred CHHHHHHHHHHc--CCCEEEEEeecCCCCcCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEEHHHhc
Confidence 334444544442 244 555566321 12347788888766789999888777788888889999998763
Q ss_pred CCCCHHHHHH
Q 007940 119 KPIRMKELRN 128 (584)
Q Consensus 119 KP~~~~eL~~ 128 (584)
.|+..+++..
T Consensus 228 ~~~~~~~~~~ 237 (241)
T PRK13585 228 GKFTLEEAIE 237 (241)
T ss_pred CCcCHHHHHH
Confidence 4555555443
No 254
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=36.37 E-value=2.4e+02 Score=29.51 Aligned_cols=55 Identities=16% Similarity=0.199 Sum_probs=33.8
Q ss_pred CCEEEEEeCCHH---HHHHHHHHHHhCCCeEEEECCHHHHHHH---HHhcCCCceEEEEecC
Q 007940 17 GLRVLVVDDDLA---WLKILEKMLKKCSYEVTTCGLARDALSL---LRERKDGYDIVISDVN 72 (584)
Q Consensus 17 gmrVLIVDDd~~---~r~~L~~lL~~~gy~V~~a~~~~eAL~~---L~~~~~~pDLVIlDi~ 72 (584)
+.+|.+|+-|.. ....++...+..++.+..+.+..+..+. +... ..+|+||+|.-
T Consensus 103 ~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~-~~~D~ViIDt~ 163 (270)
T PRK06731 103 KKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEE-ARVDYILIDTA 163 (270)
T ss_pred CCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhc-CCCCEEEEECC
Confidence 457777776654 4445555666677777766665443333 3321 24899999973
No 255
>PLN02823 spermine synthase
Probab=36.12 E-value=78 Score=34.17 Aligned_cols=55 Identities=24% Similarity=0.331 Sum_probs=37.5
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhCC-----CeEE-EECCHHHHHHHHHhcCCCceEEEEecCCC
Q 007940 17 GLRVLVVDDDLAWLKILEKMLKKCS-----YEVT-TCGLARDALSLLRERKDGYDIVISDVNMP 74 (584)
Q Consensus 17 gmrVLIVDDd~~~r~~L~~lL~~~g-----y~V~-~a~~~~eAL~~L~~~~~~pDLVIlDi~MP 74 (584)
..+|.+||=|+.+.+..++.+...+ -++. ..+++...+ +.....||+||+|+.-|
T Consensus 127 ~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L---~~~~~~yDvIi~D~~dp 187 (336)
T PLN02823 127 VEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAEL---EKRDEKFDVIIGDLADP 187 (336)
T ss_pred CCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHH---hhCCCCccEEEecCCCc
Confidence 3589999999999999998885321 1222 345555544 44344699999997554
No 256
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=36.08 E-value=3.1e+02 Score=28.77 Aligned_cols=88 Identities=16% Similarity=0.093 Sum_probs=54.4
Q ss_pred HHHHHHHHhCCCeEE--EECCHHHHHHHHHhcCCCceEEEEecCC-----CCCCHHHHHHHHhcc--CCCCEEEEEcCCC
Q 007940 31 KILEKMLKKCSYEVT--TCGLARDALSLLRERKDGYDIVISDVNM-----PDMDGFKLLEHVGLE--MDLPVIMMSVDGE 101 (584)
Q Consensus 31 ~~L~~lL~~~gy~V~--~a~~~~eAL~~L~~~~~~pDLVIlDi~M-----PdmdGlELL~~Ir~~--~~iPVIvlSa~~d 101 (584)
+.++.+-+..+.-|. .+.+.++|..+.. .+.|.|.+.-+- .+...++++..++.. ..+|||.-.+-.+
T Consensus 162 ~~i~~l~~~~~~pvivK~v~s~~~a~~a~~---~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~ipvia~GGI~~ 238 (299)
T cd02809 162 DDLAWLRSQWKGPLILKGILTPEDALRAVD---AGADGIVVSNHGGRQLDGAPATIDALPEIVAAVGGRIEVLLDGGIRR 238 (299)
T ss_pred HHHHHHHHhcCCCEEEeecCCHHHHHHHHH---CCCCEEEEcCCCCCCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCCCC
Confidence 344444444332222 3356666655543 237887775421 123456777777543 2699988888888
Q ss_pred hHHHHhhhhcCCceEE-eCCC
Q 007940 102 TSRVMKGVQHGACDYL-LKPI 121 (584)
Q Consensus 102 ~~~~~~aL~~GAdDYL-~KP~ 121 (584)
...+.+++.+||+... -.|+
T Consensus 239 ~~d~~kal~lGAd~V~ig~~~ 259 (299)
T cd02809 239 GTDVLKALALGADAVLIGRPF 259 (299)
T ss_pred HHHHHHHHHcCCCEEEEcHHH
Confidence 8999999999999864 4443
No 257
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=35.97 E-value=2e+02 Score=30.48 Aligned_cols=78 Identities=19% Similarity=0.296 Sum_probs=54.6
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhCCCeEEEE-------CCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHH---------
Q 007940 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTC-------GLARDALSLLRERKDGYDIVISDVNMPDMDGFKL--------- 81 (584)
Q Consensus 18 mrVLIVDDd~~~r~~L~~lL~~~gy~V~~a-------~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlEL--------- 81 (584)
|+|||.-..-..-..|.+.|. .+++|+.. .+.....+.+++.+ ||+||--.-+...|..|-
T Consensus 1 M~iLi~G~~GqLG~~L~~~l~-~~~~v~a~~~~~~Ditd~~~v~~~i~~~~--PDvVIn~AAyt~vD~aE~~~e~A~~vN 77 (281)
T COG1091 1 MKILITGANGQLGTELRRALP-GEFEVIATDRAELDITDPDAVLEVIRETR--PDVVINAAAYTAVDKAESEPELAFAVN 77 (281)
T ss_pred CcEEEEcCCChHHHHHHHHhC-CCceEEeccCccccccChHHHHHHHHhhC--CCEEEECccccccccccCCHHHHHHhH
Confidence 579999999999999999998 45676643 24455666777654 999998887776655332
Q ss_pred ------HHHHhccCCCCEEEEEc
Q 007940 82 ------LEHVGLEMDLPVIMMSV 98 (584)
Q Consensus 82 ------L~~Ir~~~~iPVIvlSa 98 (584)
+.++......++|.+|.
T Consensus 78 a~~~~~lA~aa~~~ga~lVhiST 100 (281)
T COG1091 78 ATGAENLARAAAEVGARLVHIST 100 (281)
T ss_pred HHHHHHHHHHHHHhCCeEEEeec
Confidence 22222335678888885
No 258
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=35.94 E-value=52 Score=32.95 Aligned_cols=79 Identities=18% Similarity=0.223 Sum_probs=46.3
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEe--cCCCCCCHH--HHHHHHhccCCCCE
Q 007940 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISD--VNMPDMDGF--KLLEHVGLEMDLPV 93 (584)
Q Consensus 18 mrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlD--i~MPdmdGl--ELL~~Ir~~~~iPV 93 (584)
|||||+|........+.+.|++.|+.+..+......+.........+|.||+- -..|..++. .+++.+. ...+||
T Consensus 1 ~~ilv~d~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~dgliisGGp~~~~~~~~~~~~i~~~~-~~~~Pi 79 (214)
T PRK07765 1 MRILVVDNYDSFVFNLVQYLGQLGVEAEVWRNDDPRLADEAAVAAQFDGVLLSPGPGTPERAGASIDMVRACA-AAGTPL 79 (214)
T ss_pred CeEEEEECCCcHHHHHHHHHHHcCCcEEEEECCCcCHHHHHHhhcCCCEEEECCCCCChhhcchHHHHHHHHH-hCCCCE
Confidence 68999999888888899999999987765543322111111111237777762 112332333 2344432 246898
Q ss_pred EEEE
Q 007940 94 IMMS 97 (584)
Q Consensus 94 IvlS 97 (584)
+-++
T Consensus 80 LGIC 83 (214)
T PRK07765 80 LGVC 83 (214)
T ss_pred EEEc
Confidence 8775
No 259
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=35.91 E-value=2.8e+02 Score=30.39 Aligned_cols=92 Identities=13% Similarity=0.062 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCC----CHHHHHHHHhcc-CCCCEEEEEcCCCh
Q 007940 28 AWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDM----DGFKLLEHVGLE-MDLPVIMMSVDGET 102 (584)
Q Consensus 28 ~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdm----dGlELL~~Ir~~-~~iPVIvlSa~~d~ 102 (584)
.-.+.+...|...||+.+.. ...+|+|++....... ..++.+++++.. +..+|| +++....
T Consensus 11 ~ds~~~~~~l~~~g~~~~~~-------------~~~aD~v~intctv~~~a~~~~~~~i~~~k~~~p~~~vv-vgGc~a~ 76 (414)
T TIGR01579 11 YESESLKNQLIQKGYEVVPD-------------EDKADVYIINTCTVTAKADSKARRAIRRARRQNPTAKII-VTGCYAQ 76 (414)
T ss_pred HHHHHHHHHHHHCcCEECCC-------------cccCCEEEEeccccchHHHHHHHHHHHHHHhhCCCcEEE-EECCccc
Confidence 34567778888888876521 1237999998755443 367778777644 445544 5544322
Q ss_pred HHHHhhhhcCCceEEeCCCCHHHHHHHHHHH
Q 007940 103 SRVMKGVQHGACDYLLKPIRMKELRNIWQHV 133 (584)
Q Consensus 103 ~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~v 133 (584)
..-.+++.....|+++-+-....+...++..
T Consensus 77 ~~~ee~~~~~~vD~vv~~e~~~~~~~ll~~~ 107 (414)
T TIGR01579 77 SNPKELADLKDVDLVLGNKEKDKINKLLSLG 107 (414)
T ss_pred cCHHHHhcCCCCcEEECCCCHHHHHHHHHHH
Confidence 3333445566678999988888777777643
No 260
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=35.81 E-value=3.1e+02 Score=27.84 Aligned_cols=77 Identities=19% Similarity=0.283 Sum_probs=48.8
Q ss_pred HHHHHHHhcCCCce-EEEEecCC-CCCC--HHHHHHHHhccCCCCEEEEEcCCChHHHHhhhhc-CCceEEe------CC
Q 007940 52 DALSLLRERKDGYD-IVISDVNM-PDMD--GFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQH-GACDYLL------KP 120 (584)
Q Consensus 52 eAL~~L~~~~~~pD-LVIlDi~M-Pdmd--GlELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~-GAdDYL~------KP 120 (584)
+..+.+.+. +++ +++.++.- .-+. -+++++.+.....+|||.--.-.+.+.+.++++. ||+..+. .-
T Consensus 157 ~~~~~~~~~--g~~~ii~~~i~~~g~~~g~d~~~i~~~~~~~~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~~~ 234 (253)
T PRK02083 157 EWAKEVEEL--GAGEILLTSMDRDGTKNGYDLELTRAVSDAVNVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHFGE 234 (253)
T ss_pred HHHHHHHHc--CCCEEEEcCCcCCCCCCCcCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHcCC
Confidence 444444432 354 56756542 1112 2677888876668999988878888889899975 9988775 33
Q ss_pred CCHHHHHHHH
Q 007940 121 IRMKELRNIW 130 (584)
Q Consensus 121 ~~~~eL~~aI 130 (584)
++..+++..+
T Consensus 235 ~~~~~~~~~~ 244 (253)
T PRK02083 235 ITIGELKAYL 244 (253)
T ss_pred CCHHHHHHHH
Confidence 4455554433
No 261
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=35.75 E-value=2.5e+02 Score=27.48 Aligned_cols=67 Identities=18% Similarity=0.075 Sum_probs=44.1
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCe--EE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHH
Q 007940 19 RVLVVDDDLAWLKILEKMLKKCSYE--VT-TCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHV 85 (584)
Q Consensus 19 rVLIVDDd~~~r~~L~~lL~~~gy~--V~-~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~I 85 (584)
+|..||.++...+.+++-++..+.. +. ...+..+++..+......+|+|++|--.....--++++.+
T Consensus 74 ~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DPPy~~~~~~~~l~~l 143 (189)
T TIGR00095 74 VAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLDPPFFNGALQALLELC 143 (189)
T ss_pred EEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEECcCCCCCcHHHHHHHH
Confidence 7999999999999999999877753 22 4445555554433221237999999755433334555555
No 262
>PRK07695 transcriptional regulator TenI; Provisional
Probab=35.68 E-value=1.7e+02 Score=28.51 Aligned_cols=68 Identities=16% Similarity=0.268 Sum_probs=46.8
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEecCCCC-------CCHHHHHHHHhccCCCCEEEEEcCCChHHHHhhhhcCCceEE
Q 007940 46 TCGLARDALSLLRERKDGYDIVISDVNMPD-------MDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYL 117 (584)
Q Consensus 46 ~a~~~~eAL~~L~~~~~~pDLVIlDi~MPd-------mdGlELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL 117 (584)
.+.+.+++.++.. .+.|.|++.-..|. ..|++.++.+....++||+.+-+- +.+.+.+++..||+.+.
T Consensus 101 s~~s~e~a~~a~~---~Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~~~ipvia~GGI-~~~~~~~~~~~Ga~gva 175 (201)
T PRK07695 101 SVHSLEEAIQAEK---NGADYVVYGHVFPTDCKKGVPARGLEELSDIARALSIPVIAIGGI-TPENTRDVLAAGVSGIA 175 (201)
T ss_pred eCCCHHHHHHHHH---cCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHhCCCCEEEEcCC-CHHHHHHHHHcCCCEEE
Confidence 4556666655433 24788887643321 236788888866567999977665 67888899999998773
No 263
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=35.15 E-value=3.5e+02 Score=27.45 Aligned_cols=105 Identities=18% Similarity=0.283 Sum_probs=56.8
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhCC--CeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCCEE
Q 007940 17 GLRVLVVDDDLAWLKILEKMLKKCS--YEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVI 94 (584)
Q Consensus 17 gmrVLIVDDd~~~r~~L~~lL~~~g--y~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVI 94 (584)
+.+++|+.+.+. .+.+++.++..+ ..|...+.-.+....+.. .|++++--.. +.-|..+++.+. ..+|||
T Consensus 219 ~~~l~i~G~g~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----ad~~v~~s~~-e~~~~~~~Ea~a--~G~PvI 290 (360)
T cd04951 219 DIKLLIAGDGPL-RATLERLIKALGLSNRVKLLGLRDDIAAYYNA----ADLFVLSSAW-EGFGLVVAEAMA--CELPVV 290 (360)
T ss_pred CeEEEEEcCCCc-HHHHHHHHHhcCCCCcEEEecccccHHHHHHh----hceEEecccc-cCCChHHHHHHH--cCCCEE
Confidence 356666665443 234555555443 234444433344444433 4566653322 222566666653 467887
Q ss_pred EEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHH
Q 007940 95 MMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFR 135 (584)
Q Consensus 95 vlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlr 135 (584)
+ +..+.. .+.+.. .+++..+.+.+++.+++..++.
T Consensus 291 ~-~~~~~~---~e~i~~--~g~~~~~~~~~~~~~~i~~ll~ 325 (360)
T cd04951 291 A-TDAGGV---REVVGD--SGLIVPISDPEALANKIDEILK 325 (360)
T ss_pred E-ecCCCh---hhEecC--CceEeCCCCHHHHHHHHHHHHh
Confidence 5 333322 222322 5678889999999999988863
No 264
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=34.80 E-value=3.7e+02 Score=29.34 Aligned_cols=100 Identities=13% Similarity=0.074 Sum_probs=61.5
Q ss_pred CCEEEEEeCCH----HHHHHHHHHHHhCCCeEEEE---CCHHHHHHHHHhcCCCceEEEEecC-----C-CCCC-----H
Q 007940 17 GLRVLVVDDDL----AWLKILEKMLKKCSYEVTTC---GLARDALSLLRERKDGYDIVISDVN-----M-PDMD-----G 78 (584)
Q Consensus 17 gmrVLIVDDd~----~~r~~L~~lL~~~gy~V~~a---~~~~eAL~~L~~~~~~pDLVIlDi~-----M-Pdmd-----G 78 (584)
+..+++||-.. ...+.++.+=+.++-..+.+ .+++.|.+++.. +.|.|.+-+. - -..+ -
T Consensus 121 ~~d~iviD~AhGhs~~~i~~ik~ir~~~p~~~viaGNV~T~e~a~~Li~a---GAD~ikVgiGpGSicttR~~~Gvg~pq 197 (343)
T TIGR01305 121 QLKFICLDVANGYSEHFVEFVKLVREAFPEHTIMAGNVVTGEMVEELILS---GADIVKVGIGPGSVCTTRTKTGVGYPQ 197 (343)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHHhhCCCCeEEEecccCHHHHHHHHHc---CCCEEEEcccCCCcccCceeCCCCcCH
Confidence 46778887533 33334444444444233333 366777776653 3788887732 1 1122 2
Q ss_pred HHHHHHHh---ccCCCCEEEEEcCCChHHHHhhhhcCCceEEeC
Q 007940 79 FKLLEHVG---LEMDLPVIMMSVDGETSRVMKGVQHGACDYLLK 119 (584)
Q Consensus 79 lELL~~Ir---~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~K 119 (584)
+..+..+. ....+|||.-.+-.....+.+|+.+||+...+=
T Consensus 198 ltAv~~~a~aa~~~~v~VIaDGGIr~~gDI~KALA~GAd~VMlG 241 (343)
T TIGR01305 198 LSAVIECADAAHGLKGHIISDGGCTCPGDVAKAFGAGADFVMLG 241 (343)
T ss_pred HHHHHHHHHHhccCCCeEEEcCCcCchhHHHHHHHcCCCEEEEC
Confidence 33444332 234789999888888899999999999998876
No 265
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=34.76 E-value=76 Score=31.21 Aligned_cols=44 Identities=16% Similarity=0.285 Sum_probs=35.8
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEE
Q 007940 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVIS 69 (584)
Q Consensus 18 mrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIl 69 (584)
|||+|||-.......+.+.|+..|+++....+..+ +. .+|.||+
T Consensus 1 ~~~~v~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~----~~----~~d~iii 44 (200)
T PRK13143 1 MMIVIIDYGVGNLRSVSKALERAGAEVVITSDPEE----IL----DADGIVL 44 (200)
T ss_pred CeEEEEECCCccHHHHHHHHHHCCCeEEEECCHHH----Hc----cCCEEEE
Confidence 69999999999999999999999999887765321 22 3888887
No 266
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=34.61 E-value=3.2e+02 Score=28.85 Aligned_cols=100 Identities=18% Similarity=0.265 Sum_probs=58.0
Q ss_pred EEEEEe--CCHHH---HHHHHHHHHhCCCeEEEECCHHHHHHH-------HHhcCCCceEEEEecCCCCCCHHHHHHHHh
Q 007940 19 RVLVVD--DDLAW---LKILEKMLKKCSYEVTTCGLARDALSL-------LRERKDGYDIVISDVNMPDMDGFKLLEHVG 86 (584)
Q Consensus 19 rVLIVD--Dd~~~---r~~L~~lL~~~gy~V~~a~~~~eAL~~-------L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir 86 (584)
+|+|+- +.+.. .+.+.+.|++.|+++.........+.. .......+|+||+ -|.||. +++.++
T Consensus 7 ~v~iv~~~~~~~~~e~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~----~GGDGt-~l~~~~ 81 (291)
T PRK02155 7 TVALIGRYQTPGIAEPLESLAAFLAKRGFEVVFEADTARNIGLTGYPALTPEEIGARADLAVV----LGGDGT-MLGIGR 81 (291)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccChhHhccCCCEEEE----ECCcHH-HHHHHH
Confidence 377772 33333 456666777888887654432221110 1111123788776 366773 333333
Q ss_pred c--cCCCCEEEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHhc
Q 007940 87 L--EMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 137 (584)
Q Consensus 87 ~--~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrrk 137 (584)
. ...+|++-+. .|=.+|+. .+..+++..++.++++..
T Consensus 82 ~~~~~~~pilGIn-------------~G~lGFL~-~~~~~~~~~~l~~~~~g~ 120 (291)
T PRK02155 82 QLAPYGVPLIGIN-------------HGRLGFIT-DIPLDDMQETLPPMLAGN 120 (291)
T ss_pred HhcCCCCCEEEEc-------------CCCccccc-cCCHHHHHHHHHHHHcCC
Confidence 2 3577877553 35557888 788899999999887553
No 267
>PRK04302 triosephosphate isomerase; Provisional
Probab=34.47 E-value=4.8e+02 Score=26.00 Aligned_cols=99 Identities=17% Similarity=0.109 Sum_probs=55.8
Q ss_pred CCEEEEEeCC------HHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEecC-CC----C-----CCH-
Q 007940 17 GLRVLVVDDD------LAWLKILEKMLKKCSYEVT-TCGLARDALSLLRERKDGYDIVISDVN-MP----D-----MDG- 78 (584)
Q Consensus 17 gmrVLIVDDd------~~~r~~L~~lL~~~gy~V~-~a~~~~eAL~~L~~~~~~pDLVIlDi~-MP----d-----mdG- 78 (584)
|...+|+.|. ....+.+... .+.|..++ ++++.+++.. +.+. .+|+|-+.-. .- + -.+
T Consensus 85 G~~~vii~~ser~~~~~e~~~~v~~a-~~~Gl~~I~~v~~~~~~~~-~~~~--~~~~I~~~p~~~igt~~~~~~~~~~~i 160 (223)
T PRK04302 85 GAVGTLINHSERRLTLADIEAVVERA-KKLGLESVVCVNNPETSAA-AAAL--GPDYVAVEPPELIGTGIPVSKAKPEVV 160 (223)
T ss_pred CCCEEEEeccccccCHHHHHHHHHHH-HHCCCeEEEEcCCHHHHHH-HhcC--CCCEEEEeCccccccCCCCCcCCHHHH
Confidence 4555666653 2233333333 44676555 5555455443 3332 3666654211 10 1 112
Q ss_pred HHHHHHHhcc-CCCCEEEEEcCCChHHHHhhhhcCCceEEeC
Q 007940 79 FKLLEHVGLE-MDLPVIMMSVDGETSRVMKGVQHGACDYLLK 119 (584)
Q Consensus 79 lELL~~Ir~~-~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~K 119 (584)
.++++.++.. .++|||.-.+-...+.+..++..||+++++-
T Consensus 161 ~~~~~~ir~~~~~~pvi~GggI~~~e~~~~~~~~gadGvlVG 202 (223)
T PRK04302 161 EDAVEAVKKVNPDVKVLCGAGISTGEDVKAALELGADGVLLA 202 (223)
T ss_pred HHHHHHHHhccCCCEEEEECCCCCHHHHHHHHcCCCCEEEEe
Confidence 3445556643 4689988777778888889999999998754
No 268
>PRK00811 spermidine synthase; Provisional
Probab=34.44 E-value=2.7e+02 Score=28.94 Aligned_cols=55 Identities=20% Similarity=0.308 Sum_probs=38.1
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhCC------CeEE-EECCHHHHHHHHHhcCCCceEEEEecCCCC
Q 007940 18 LRVLVVDDDLAWLKILEKMLKKCS------YEVT-TCGLARDALSLLRERKDGYDIVISDVNMPD 75 (584)
Q Consensus 18 mrVLIVDDd~~~r~~L~~lL~~~g------y~V~-~a~~~~eAL~~L~~~~~~pDLVIlDi~MPd 75 (584)
-+|.+||=++.+.+..++.+...+ -+|. ...++.+.+. .....||+||+|..-|.
T Consensus 101 ~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~---~~~~~yDvIi~D~~dp~ 162 (283)
T PRK00811 101 EKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVA---ETENSFDVIIVDSTDPV 162 (283)
T ss_pred CEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHh---hCCCcccEEEECCCCCC
Confidence 489999999999999999886421 1232 4555555443 33345999999986664
No 269
>PRK00654 glgA glycogen synthase; Provisional
Probab=34.17 E-value=5.8e+02 Score=28.17 Aligned_cols=108 Identities=10% Similarity=0.129 Sum_probs=57.0
Q ss_pred CCEEEEEeCC-HHHHHHHHHHHHhCCCeEEE-ECCHHHHH-HHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCCE
Q 007940 17 GLRVLVVDDD-LAWLKILEKMLKKCSYEVTT-CGLARDAL-SLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPV 93 (584)
Q Consensus 17 gmrVLIVDDd-~~~r~~L~~lL~~~gy~V~~-a~~~~eAL-~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPV 93 (584)
+.+++|+-+- +.....++++.++.+-.+.. .+-..+.. ..+.. .|++++-- .-+.-|+-+++.+. ..+|+
T Consensus 311 ~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~g~~~~~~~~~~~~----aDv~v~PS-~~E~~gl~~lEAma--~G~p~ 383 (466)
T PRK00654 311 GGQLVLLGTGDPELEEAFRALAARYPGKVGVQIGYDEALAHRIYAG----ADMFLMPS-RFEPCGLTQLYALR--YGTLP 383 (466)
T ss_pred CCEEEEEecCcHHHHHHHHHHHHHCCCcEEEEEeCCHHHHHHHHhh----CCEEEeCC-CCCCchHHHHHHHH--CCCCE
Confidence 3456666543 33445555555555433321 11112222 22222 46666532 12334555565543 45677
Q ss_pred EEEEcCCChHHHHhhhhcC------CceEEeCCCCHHHHHHHHHHHHH
Q 007940 94 IMMSVDGETSRVMKGVQHG------ACDYLLKPIRMKELRNIWQHVFR 135 (584)
Q Consensus 94 IvlSa~~d~~~~~~aL~~G------AdDYL~KP~~~~eL~~aI~~vlr 135 (584)
|+ +..+... +.+..| ..+|+..|.+.++|.+++.+++.
T Consensus 384 V~-~~~gG~~---e~v~~~~~~~~~~~G~lv~~~d~~~la~~i~~~l~ 427 (466)
T PRK00654 384 IV-RRTGGLA---DTVIDYNPEDGEATGFVFDDFNAEDLLRALRRALE 427 (466)
T ss_pred EE-eCCCCcc---ceeecCCCCCCCCceEEeCCCCHHHHHHHHHHHHH
Confidence 65 4333222 233344 77899999999999999988764
No 270
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=34.03 E-value=4e+02 Score=29.16 Aligned_cols=71 Identities=14% Similarity=0.144 Sum_probs=46.6
Q ss_pred ceEEEEecCCCCCCHHHH-HHHHhccCCCCEEEEEc-CCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHH
Q 007940 64 YDIVISDVNMPDMDGFKL-LEHVGLEMDLPVIMMSV-DGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFR 135 (584)
Q Consensus 64 pDLVIlDi~MPdmdGlEL-L~~Ir~~~~iPVIvlSa-~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlr 135 (584)
.+.+|++..-+..=-+|. +..+. .....+|.... ..+...+..+|+.|+++.+++|-+..++++....+-.
T Consensus 97 ~~~~iv~~~Dw~iIPlEnliA~~~-~~~~~i~a~v~~~~eA~~~~~~LE~G~dGVll~~~d~~ei~~~~~~~~~ 169 (354)
T PF01959_consen 97 ADYVIVEFRDWTIIPLENLIAALQ-GSSTKIIAVVADAEEARVALEVLEKGVDGVLLDPDDPAEIKALVALLKE 169 (354)
T ss_pred CCeEEEEcCCCcEecHHHHHHHhc-CCCceEEEEeCCHHHHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHhh
Confidence 466777665444333332 33332 23444554433 3667778899999999999999999999887665543
No 271
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=33.95 E-value=2.7e+02 Score=30.59 Aligned_cols=76 Identities=16% Similarity=0.102 Sum_probs=50.8
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhCCCe-E-EEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHH-HhccCCCCEE
Q 007940 18 LRVLVVDDDLAWLKILEKMLKKCSYE-V-TTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEH-VGLEMDLPVI 94 (584)
Q Consensus 18 mrVLIVDDd~~~r~~L~~lL~~~gy~-V-~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~-Ir~~~~iPVI 94 (584)
-+|..+|=++...+.++.-++..+.. + ....++.+.+ .. ...||+|++|- |+. +.+++.. ++....--+|
T Consensus 82 ~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l---~~-~~~fD~V~lDP--~Gs-~~~~l~~al~~~~~~gil 154 (382)
T PRK04338 82 EKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALL---HE-ERKFDVVDIDP--FGS-PAPFLDSAIRSVKRGGLL 154 (382)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHH---hh-cCCCCEEEECC--CCC-cHHHHHHHHHHhcCCCEE
Confidence 37999999999999999988776643 2 3344444433 32 23499999996 443 4566665 5444455688
Q ss_pred EEEcCC
Q 007940 95 MMSVDG 100 (584)
Q Consensus 95 vlSa~~ 100 (584)
.+|+..
T Consensus 155 yvSAtD 160 (382)
T PRK04338 155 CVTATD 160 (382)
T ss_pred EEEecC
Confidence 888653
No 272
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=33.62 E-value=1.6e+02 Score=30.13 Aligned_cols=96 Identities=17% Similarity=0.118 Sum_probs=61.0
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEE--EE--CC---HHHHHHHHHhcCCCceEEEEecCCCCC--CHHHHHHHHhccC-
Q 007940 20 VLVVDDDLAWLKILEKMLKKCSYEVT--TC--GL---ARDALSLLRERKDGYDIVISDVNMPDM--DGFKLLEHVGLEM- 89 (584)
Q Consensus 20 VLIVDDd~~~r~~L~~lL~~~gy~V~--~a--~~---~~eAL~~L~~~~~~pDLVIlDi~MPdm--dGlELL~~Ir~~~- 89 (584)
-.+..|...+.++++.+- ..+..|. .- .+ ..+..+.+.+ .+.|.|.+|...++. -.++.+++++...
T Consensus 114 ~~Ll~dp~~l~~iv~av~-~~~~PVsvKiR~~~~~~~~~~~a~~l~~--aGad~i~Vd~~~~g~~~a~~~~I~~i~~~~~ 190 (231)
T TIGR00736 114 QELLKNKELLKEFLTKMK-ELNKPIFVKIRGNCIPLDELIDALNLVD--DGFDGIHVDAMYPGKPYADMDLLKILSEEFN 190 (231)
T ss_pred hhhcCCHHHHHHHHHHHH-cCCCcEEEEeCCCCCcchHHHHHHHHHH--cCCCEEEEeeCCCCCchhhHHHHHHHHHhcC
Confidence 334556565666666555 3343222 11 11 1233334444 348999999877764 2478888887665
Q ss_pred CCCEEEEEcCCChHHHHhhhhcCCceEEe
Q 007940 90 DLPVIMMSVDGETSRVMKGVQHGACDYLL 118 (584)
Q Consensus 90 ~iPVIvlSa~~d~~~~~~aL~~GAdDYL~ 118 (584)
.+|||..-.-.+.+.+.+.++.||+...+
T Consensus 191 ~ipIIgNGgI~s~eda~e~l~~GAd~Vmv 219 (231)
T TIGR00736 191 DKIIIGNNSIDDIESAKEMLKAGADFVSV 219 (231)
T ss_pred CCcEEEECCcCCHHHHHHHHHhCCCeEEE
Confidence 59999877777888899999999988743
No 273
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=33.53 E-value=1.8e+02 Score=28.03 Aligned_cols=82 Identities=23% Similarity=0.215 Sum_probs=47.1
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHHhCCCe---------------EEEECCHHHHHHHHHh--cCCCceEEEEecCCCCCCH
Q 007940 16 AGLRVLVVDDDLAWLKILEKMLKKCSYE---------------VTTCGLARDALSLLRE--RKDGYDIVISDVNMPDMDG 78 (584)
Q Consensus 16 ~gmrVLIVDDd~~~r~~L~~lL~~~gy~---------------V~~a~~~~eAL~~L~~--~~~~pDLVIlDi~MPdmdG 78 (584)
+++||||+.--....+.+.+.|+..++. +...+.+. ....+.. ....||+||+|---- +|-
T Consensus 32 ~~~rvLvL~PTRvva~em~~aL~~~~~~~~t~~~~~~~~g~~~i~vMc~at-~~~~~~~p~~~~~yd~II~DEcH~-~Dp 109 (148)
T PF07652_consen 32 RRLRVLVLAPTRVVAEEMYEALKGLPVRFHTNARMRTHFGSSIIDVMCHAT-YGHFLLNPCRLKNYDVIIMDECHF-TDP 109 (148)
T ss_dssp TT--EEEEESSHHHHHHHHHHTTTSSEEEESTTSS----SSSSEEEEEHHH-HHHHHHTSSCTTS-SEEEECTTT---SH
T ss_pred ccCeEEEecccHHHHHHHHHHHhcCCcccCceeeeccccCCCcccccccHH-HHHHhcCcccccCccEEEEecccc-CCH
Confidence 5789999999999999999999876532 22222232 3333332 123599999996322 343
Q ss_pred HH-----HHHHHhccCCCCEEEEEcC
Q 007940 79 FK-----LLEHVGLEMDLPVIMMSVD 99 (584)
Q Consensus 79 lE-----LL~~Ir~~~~iPVIvlSa~ 99 (584)
-. +++.+.......+|++|+.
T Consensus 110 ~sIA~rg~l~~~~~~g~~~~i~mTAT 135 (148)
T PF07652_consen 110 TSIAARGYLRELAESGEAKVIFMTAT 135 (148)
T ss_dssp HHHHHHHHHHHHHHTTS-EEEEEESS
T ss_pred HHHhhheeHHHhhhccCeeEEEEeCC
Confidence 22 3333333345679999976
No 274
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=33.17 E-value=1.9e+02 Score=32.87 Aligned_cols=101 Identities=22% Similarity=0.200 Sum_probs=63.5
Q ss_pred CCCEEEEEeCC----HHHHHHHHHHHHhCC-CeEE--EECCHHHHHHHHHhcCCCceEEEEecCC------C-----CCC
Q 007940 16 AGLRVLVVDDD----LAWLKILEKMLKKCS-YEVT--TCGLARDALSLLRERKDGYDIVISDVNM------P-----DMD 77 (584)
Q Consensus 16 ~gmrVLIVDDd----~~~r~~L~~lL~~~g-y~V~--~a~~~~eAL~~L~~~~~~pDLVIlDi~M------P-----dmd 77 (584)
.|..+++||-. ....+.++.+=+..+ ..+. -+.+.++|..++.. +.|.|-+-+.- . +..
T Consensus 238 aGvd~i~~D~a~~~~~~~~~~i~~ik~~~p~~~v~agnv~t~~~a~~l~~a---Gad~v~vgig~gsictt~~~~~~~~p 314 (479)
T PRK07807 238 AGVDVLVVDTAHGHQEKMLEALRAVRALDPGVPIVAGNVVTAEGTRDLVEA---GADIVKVGVGPGAMCTTRMMTGVGRP 314 (479)
T ss_pred hCCCEEEEeccCCccHHHHHHHHHHHHHCCCCeEEeeccCCHHHHHHHHHc---CCCEEEECccCCcccccccccCCchh
Confidence 56788888843 344444555545543 2333 24567788777763 37888754432 1 112
Q ss_pred HHHHHHHHhc---cCCCCEEEEEcCCChHHHHhhhhcCCceEEeC
Q 007940 78 GFKLLEHVGL---EMDLPVIMMSVDGETSRVMKGVQHGACDYLLK 119 (584)
Q Consensus 78 GlELL~~Ir~---~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~K 119 (584)
-++++..+.. ...+|||.--.-.....+.+|+.+||+....-
T Consensus 315 ~~~av~~~~~~~~~~~~~via~ggi~~~~~~~~al~~ga~~v~~g 359 (479)
T PRK07807 315 QFSAVLECAAAARELGAHVWADGGVRHPRDVALALAAGASNVMIG 359 (479)
T ss_pred HHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHcCCCeeecc
Confidence 2444444422 45799998888888899999999999987654
No 275
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=33.12 E-value=3.4e+02 Score=28.88 Aligned_cols=94 Identities=16% Similarity=0.229 Sum_probs=57.6
Q ss_pred eCCHHHHHHHHHHHHhCC--CeEEE-E---------CCHHHHHHHHHhcC-CCceEEEEecCC---C-----------CC
Q 007940 24 DDDLAWLKILEKMLKKCS--YEVTT-C---------GLARDALSLLRERK-DGYDIVISDVNM---P-----------DM 76 (584)
Q Consensus 24 DDd~~~r~~L~~lL~~~g--y~V~~-a---------~~~~eAL~~L~~~~-~~pDLVIlDi~M---P-----------dm 76 (584)
..-...+++++.+-+..| +.|.. . -+.++++++++... ..+|+|-+-... | ..
T Consensus 197 nR~rf~~EiI~aIR~avG~d~~v~vris~~~~~~~g~~~eea~~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~ 276 (338)
T cd04733 197 NRARLLLEIYDAIRAAVGPGFPVGIKLNSADFQRGGFTEEDALEVVEALEEAGVDLVELSGGTYESPAMAGAKKESTIAR 276 (338)
T ss_pred HHHHHHHHHHHHHHHHcCCCCeEEEEEcHHHcCCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCCCccccccccCCcccc
Confidence 344455666777776665 33332 2 24456666554321 236766532111 0 01
Q ss_pred CH--HHHHHHHhccCCCCEEEEEcCCChHHHHhhhhcCCceEE
Q 007940 77 DG--FKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYL 117 (584)
Q Consensus 77 dG--lELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL 117 (584)
.| .+++++|+...++||++.....+.+.+.++++.|..|++
T Consensus 277 ~~~~~~~~~~ik~~v~iPVi~~G~i~t~~~a~~~l~~g~aD~V 319 (338)
T cd04733 277 EAYFLEFAEKIRKVTKTPLMVTGGFRTRAAMEQALASGAVDGI 319 (338)
T ss_pred chhhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHcCCCCee
Confidence 22 467778877778999988777788999999999988875
No 276
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=32.35 E-value=2.8e+02 Score=28.17 Aligned_cols=55 Identities=25% Similarity=0.330 Sum_probs=35.3
Q ss_pred HHHHHHhccCCCCEEEEE-----cCCChHHHHhhhhcCCceEEeC--CCC-HHHHHHHHHHHH
Q 007940 80 KLLEHVGLEMDLPVIMMS-----VDGETSRVMKGVQHGACDYLLK--PIR-MKELRNIWQHVF 134 (584)
Q Consensus 80 ELL~~Ir~~~~iPVIvlS-----a~~d~~~~~~aL~~GAdDYL~K--P~~-~~eL~~aI~~vl 134 (584)
++++.++...++|+++|+ ..+-...+.++.+.||+.++.. |+. .+++...++.+.
T Consensus 64 ~~v~~vr~~~~~Pl~lM~y~n~~~~~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~ 126 (244)
T PRK13125 64 PLLEEVRKDVSVPIILMTYLEDYVDSLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIK 126 (244)
T ss_pred HHHHHHhccCCCCEEEEEecchhhhCHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHH
Confidence 466667656688987664 2334455778889999999886 343 355555444443
No 277
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=31.93 E-value=6.7e+02 Score=27.33 Aligned_cols=107 Identities=13% Similarity=0.141 Sum_probs=64.2
Q ss_pred CCEEEEEeCCH-----HHHHHHHHHHHhCCC--eEEEECC--HHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc
Q 007940 17 GLRVLVVDDDL-----AWLKILEKMLKKCSY--EVTTCGL--ARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGL 87 (584)
Q Consensus 17 gmrVLIVDDd~-----~~r~~L~~lL~~~gy--~V~~a~~--~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~ 87 (584)
+++++|+-+.. ...+.|+++.+..+. .|...+. -.+..+.++. .|+++.= ...+.=|+-+++.+.
T Consensus 273 ~~~lvivG~~~~~~~~~~~~~L~~~~~~l~l~~~V~f~g~v~~~~l~~~l~~----adv~v~~-s~~E~Fgi~~lEAMa- 346 (419)
T cd03806 273 KIKLVLIGSCRNEDDEKRVEDLKLLAKELGLEDKVEFVVNAPFEELLEELST----ASIGLHT-MWNEHFGIGVVEYMA- 346 (419)
T ss_pred ceEEEEEcCCCCcccHHHHHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHh----CeEEEEC-CccCCcccHHHHHHH-
Confidence 46888887642 355667777666553 3554443 3555555554 4666652 223334677777653
Q ss_pred cCCCCEEEEEcCCChHHHHhhhh---cCCceEEeCCCCHHHHHHHHHHHHH
Q 007940 88 EMDLPVIMMSVDGETSRVMKGVQ---HGACDYLLKPIRMKELRNIWQHVFR 135 (584)
Q Consensus 88 ~~~iPVIvlSa~~d~~~~~~aL~---~GAdDYL~KP~~~~eL~~aI~~vlr 135 (584)
..+|||.....+... +.+. .|..+|+.. +.+++.+++.+++.
T Consensus 347 -~G~pvIa~~~ggp~~---~iv~~~~~g~~G~l~~--d~~~la~ai~~ll~ 391 (419)
T cd03806 347 -AGLIPLAHASGGPLL---DIVVPWDGGPTGFLAS--TAEEYAEAIEKILS 391 (419)
T ss_pred -cCCcEEEEcCCCCch---heeeccCCCCceEEeC--CHHHHHHHHHHHHh
Confidence 457777543223222 3344 677888863 89999999988875
No 278
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=31.81 E-value=2.8e+02 Score=29.97 Aligned_cols=53 Identities=17% Similarity=0.137 Sum_probs=38.9
Q ss_pred ceEEEEecCCCCCC-HHHHHHHHhcc-CCCCEEEEEcCCChHHHHhhhhcCCceEE
Q 007940 64 YDIVISDVNMPDMD-GFKLLEHVGLE-MDLPVIMMSVDGETSRVMKGVQHGACDYL 117 (584)
Q Consensus 64 pDLVIlDi~MPdmd-GlELL~~Ir~~-~~iPVIvlSa~~d~~~~~~aL~~GAdDYL 117 (584)
+|+|.+|+..+..+ -.+++++|+.. +.+|||+ -.-...+.+..+.++||+...
T Consensus 112 ~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~-g~V~t~e~a~~l~~aGad~i~ 166 (326)
T PRK05458 112 PEYITIDIAHGHSDSVINMIQHIKKHLPETFVIA-GNVGTPEAVRELENAGADATK 166 (326)
T ss_pred CCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEE-EecCCHHHHHHHHHcCcCEEE
Confidence 59999999987644 46778888755 3466554 223467888999999998865
No 279
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=31.61 E-value=2.3e+02 Score=30.70 Aligned_cols=63 Identities=19% Similarity=0.313 Sum_probs=40.9
Q ss_pred CEEEEEeCCHH-----HHHHHHHHHHhCCCeEEEEC---------CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHH
Q 007940 18 LRVLVVDDDLA-----WLKILEKMLKKCSYEVTTCG---------LARDALSLLRERKDGYDIVISDVNMPDMDGFKLLE 83 (584)
Q Consensus 18 mrVLIVDDd~~-----~r~~L~~lL~~~gy~V~~a~---------~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~ 83 (584)
-|+|||-|... ..+.+...|++.|.++..+. +..++.+.+++.. +|+||- .-+..-++..|
T Consensus 26 ~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~--~D~Iia---vGGGS~iD~aK 100 (380)
T cd08185 26 KKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFDKVEPNPTTTTVMEGAALAREEG--CDFVVG---LGGGSSMDTAK 100 (380)
T ss_pred CeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHHcC--CCEEEE---eCCccHHHHHH
Confidence 58999998754 34667888888786665443 2456666666644 898883 34555555555
Q ss_pred HH
Q 007940 84 HV 85 (584)
Q Consensus 84 ~I 85 (584)
.+
T Consensus 101 ~i 102 (380)
T cd08185 101 AI 102 (380)
T ss_pred HH
Confidence 44
No 280
>PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=31.49 E-value=2.6e+02 Score=31.42 Aligned_cols=103 Identities=16% Similarity=0.142 Sum_probs=62.5
Q ss_pred CEEEEEe----CCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCH----HHHH---HHHh
Q 007940 18 LRVLVVD----DDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDG----FKLL---EHVG 86 (584)
Q Consensus 18 mrVLIVD----Dd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdG----lELL---~~Ir 86 (584)
++|.|+- =+..-.+.+...|...||.++. . ....|+|++...-.-.+. ...+ +.++
T Consensus 24 ~~~~i~t~GC~~N~~dse~~~~~l~~~G~~~~~------------~-~~~ADiviiNTC~v~~~a~~k~~~~i~~~~~~k 90 (467)
T PRK14329 24 KKLFIESYGCQMNFADSEIVASILQMAGYNTTE------------N-LEEADLVLVNTCSIRDNAEQKVRKRLEKFNALK 90 (467)
T ss_pred CEEEEEecCCCCcHHHHHHHHHHHHHCcCEECC------------C-cccCCEEEEeCcceechHHHHHHHHHHHHHHHH
Confidence 3566654 3566668888888888988752 1 123799999876554222 2333 4443
Q ss_pred cc-CCCCEEEEEcCCChHHHHhhhhc-CCceEEeCCCCHHHHHHHHHHHH
Q 007940 87 LE-MDLPVIMMSVDGETSRVMKGVQH-GACDYLLKPIRMKELRNIWQHVF 134 (584)
Q Consensus 87 ~~-~~iPVIvlSa~~d~~~~~~aL~~-GAdDYL~KP~~~~eL~~aI~~vl 134 (584)
.. +.. .|++++.-....-.+.++. +..|+++.+-....+...+..+.
T Consensus 91 ~~~p~~-~ivvgGc~a~~~~~~~l~~~~~vD~vv~~e~~~~i~~ll~~~~ 139 (467)
T PRK14329 91 KKNPKL-IVGVLGCMAERLKDKLLEEEKIVDLVVGPDAYLDLPNLIAEVE 139 (467)
T ss_pred hhCCCc-EEEEECChhcCcHHHHHhcCCCceEEECCCCHHHHHHHHHHHh
Confidence 33 344 4556654332323344444 44899999999888888877653
No 281
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=31.49 E-value=3e+02 Score=27.22 Aligned_cols=84 Identities=15% Similarity=0.128 Sum_probs=47.4
Q ss_pred CCHHHHHHHHHhcCCCceEEEEecCCCC---------CCHHHHHHHHhccC--CCCEEEEEcCCChHHHHh---hhhcCC
Q 007940 48 GLARDALSLLRERKDGYDIVISDVNMPD---------MDGFKLLEHVGLEM--DLPVIMMSVDGETSRVMK---GVQHGA 113 (584)
Q Consensus 48 ~~~~eAL~~L~~~~~~pDLVIlDi~MPd---------mdGlELL~~Ir~~~--~iPVIvlSa~~d~~~~~~---aL~~GA 113 (584)
.+..+.++.+... ++|.|++|++--. .+-.+++..++... ...+++=....+.....+ +++.|+
T Consensus 8 ~~~~~~~~~a~~~--g~D~vilDlEd~~~~~~K~~ar~~~~~~~~~~~~~~~~~~~~~VRvn~~~~~~~~~Dl~~l~~g~ 85 (221)
T PF03328_consen 8 ANSPKMLEKAAAS--GADFVILDLEDGVPPDEKDEAREDLAEALRSIRAARAAGSEIIVRVNSLDSPHIERDLEALDAGA 85 (221)
T ss_dssp STSHHHHHHHHTT--CSSEEEEESSTTSSGGGHHHHHHHHHHHHHHHHHHTTSSSEEEEE-SSTTCHHHHHHHHHHHTTS
T ss_pred CCCHHHHHHHHhc--CCCEEEEeCcccCCcccchhhHHHHHHHHHhhcccccccccceecCCCCCcchhhhhhhhcccCC
Confidence 3445556666553 4999999998643 22334444443312 233443334445555666 999999
Q ss_pred ceEEeC-CCCHHHHHHHHHHH
Q 007940 114 CDYLLK-PIRMKELRNIWQHV 133 (584)
Q Consensus 114 dDYL~K-P~~~~eL~~aI~~v 133 (584)
+.+++- =-+.++++.+++.+
T Consensus 86 ~gI~lP~ves~~~~~~~~~~~ 106 (221)
T PF03328_consen 86 DGIVLPKVESAEDARQAVAAL 106 (221)
T ss_dssp SEEEETT--SHHHHHHHHHHH
T ss_pred CeeeccccCcHHHHHHHHHHH
Confidence 997654 34566666655544
No 282
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=31.43 E-value=1.6e+02 Score=33.53 Aligned_cols=100 Identities=16% Similarity=0.106 Sum_probs=58.8
Q ss_pred CCCEEEEEeCCHHH----HHHHHHHHHhCC--CeEEE--ECCHHHHHHHHHhcCCCceEEEEec--------------CC
Q 007940 16 AGLRVLVVDDDLAW----LKILEKMLKKCS--YEVTT--CGLARDALSLLRERKDGYDIVISDV--------------NM 73 (584)
Q Consensus 16 ~gmrVLIVDDd~~~----r~~L~~lL~~~g--y~V~~--a~~~~eAL~~L~~~~~~pDLVIlDi--------------~M 73 (584)
+|..+++||-.+-. .+.++.+-+.++ ..|.. +.+.+.|..++.. +.|.|.+-+ ..
T Consensus 253 aGvd~i~vd~a~g~~~~~~~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li~a---GAd~I~vg~g~Gs~c~tr~~~~~g~ 329 (502)
T PRK07107 253 AGADVLCIDSSEGYSEWQKRTLDWIREKYGDSVKVGAGNVVDREGFRYLAEA---GADFVKVGIGGGSICITREQKGIGR 329 (502)
T ss_pred hCCCeEeecCcccccHHHHHHHHHHHHhCCCCceEEeccccCHHHHHHHHHc---CCCEEEECCCCCcCcccccccCCCc
Confidence 46777877754443 445555544444 23333 4566677666653 368876533 22
Q ss_pred CCCCHHHHHHH-Hhc-----cCCCCEEEEEcCCChHHHHhhhhcCCceEEe
Q 007940 74 PDMDGFKLLEH-VGL-----EMDLPVIMMSVDGETSRVMKGVQHGACDYLL 118 (584)
Q Consensus 74 PdmdGlELL~~-Ir~-----~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~ 118 (584)
|..+.+.-+.. .+. ...+|||+-.+-.....+.+|+.+||+...+
T Consensus 330 ~~~~ai~~~~~a~~~~~~~~g~~~~viadgGir~~gdi~KAla~GA~~vm~ 380 (502)
T PRK07107 330 GQATALIEVAKARDEYFEETGVYIPICSDGGIVYDYHMTLALAMGADFIML 380 (502)
T ss_pred cHHHHHHHHHHHHHHHHhhcCCcceEEEcCCCCchhHHHHHHHcCCCeeee
Confidence 32222222222 111 1248999888888888999999999998765
No 283
>PLN02316 synthase/transferase
Probab=31.07 E-value=6.2e+02 Score=31.72 Aligned_cols=56 Identities=7% Similarity=0.042 Sum_probs=34.7
Q ss_pred HHHHHHHHhccCCCCEEEEEcCCChHHHHhh---------hhcCCceEEeCCCCHHHHHHHHHHHHH
Q 007940 78 GFKLLEHVGLEMDLPVIMMSVDGETSRVMKG---------VQHGACDYLLKPIRMKELRNIWQHVFR 135 (584)
Q Consensus 78 GlELL~~Ir~~~~iPVIvlSa~~d~~~~~~a---------L~~GAdDYL~KP~~~~eL~~aI~~vlr 135 (584)
|+-.++.++ ..+|+|+-..-+-.+.+... ...|..+|+..|.+...|..+|.+++.
T Consensus 933 GLvqLEAMa--~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~~tGflf~~~d~~aLa~AL~raL~ 997 (1036)
T PLN02316 933 GLTQLTAMR--YGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLEPNGFSFDGADAAGVDYALNRAIS 997 (1036)
T ss_pred cHHHHHHHH--cCCCeEEEcCCCcHhhccccccccccccccccCCceEEeCCCCHHHHHHHHHHHHh
Confidence 555555543 45666653333333333322 012578999999999999999988875
No 284
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=31.06 E-value=1.6e+02 Score=31.65 Aligned_cols=64 Identities=23% Similarity=0.364 Sum_probs=44.3
Q ss_pred EEEEEeCCHHHHHHHHHHHHh--CCC---eE-EEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHH
Q 007940 19 RVLVVDDDLAWLKILEKMLKK--CSY---EV-TTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEH 84 (584)
Q Consensus 19 rVLIVDDd~~~r~~L~~lL~~--~gy---~V-~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~ 84 (584)
.|+++|-+..+.+.=..++.. +|| +| ...++|-..++.+.+ +.+|+||+|+.-|.+.+..+-.+
T Consensus 147 ~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~--~~~dVii~dssdpvgpa~~lf~~ 216 (337)
T KOG1562|consen 147 NILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKE--NPFDVIITDSSDPVGPACALFQK 216 (337)
T ss_pred ceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhcc--CCceEEEEecCCccchHHHHHHH
Confidence 467777777777776666653 344 23 345577777776654 45999999999999998776543
No 285
>PRK01581 speE spermidine synthase; Validated
Probab=30.84 E-value=2.9e+02 Score=30.43 Aligned_cols=55 Identities=29% Similarity=0.347 Sum_probs=34.9
Q ss_pred CCEEEEEeCCHHHHHHHHHH--H---HhCC---CeEE-EECCHHHHHHHHHhcCCCceEEEEecCCC
Q 007940 17 GLRVLVVDDDLAWLKILEKM--L---KKCS---YEVT-TCGLARDALSLLRERKDGYDIVISDVNMP 74 (584)
Q Consensus 17 gmrVLIVDDd~~~r~~L~~l--L---~~~g---y~V~-~a~~~~eAL~~L~~~~~~pDLVIlDi~MP 74 (584)
.-+|.+||=++.+.+..+.. | .+.+ -++. .++++.+.+. .....||+||+|+--|
T Consensus 174 v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~---~~~~~YDVIIvDl~DP 237 (374)
T PRK01581 174 VLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLS---SPSSLYDVIIIDFPDP 237 (374)
T ss_pred CCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHH---hcCCCccEEEEcCCCc
Confidence 35899999999988887752 2 1111 2333 3556665544 3334599999997544
No 286
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=30.80 E-value=3.5e+02 Score=28.12 Aligned_cols=56 Identities=23% Similarity=0.281 Sum_probs=33.3
Q ss_pred CCCCEEEEEeCCHH---HHHHHHHHHHhCCCeEEEECC---H-H---HHHHHHHhcCCCceEEEEecC
Q 007940 15 PAGLRVLVVDDDLA---WLKILEKMLKKCSYEVTTCGL---A-R---DALSLLRERKDGYDIVISDVN 72 (584)
Q Consensus 15 p~gmrVLIVDDd~~---~r~~L~~lL~~~gy~V~~a~~---~-~---eAL~~L~~~~~~pDLVIlDi~ 72 (584)
..|.+|++||-|.. ..+.++.+.+..+..+..... . . +++..+.. ..+|+||+|.-
T Consensus 98 ~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~~~--~~~D~ViIDT~ 163 (272)
T TIGR00064 98 KQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKA--RNIDVVLIDTA 163 (272)
T ss_pred hcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHHHH--CCCCEEEEeCC
Confidence 34679999997753 235566666777755543322 1 2 33333333 34999999973
No 287
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=30.78 E-value=3.4e+02 Score=29.72 Aligned_cols=77 Identities=13% Similarity=0.173 Sum_probs=48.8
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhCCCe-EE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHH-hccCCCCEE
Q 007940 18 LRVLVVDDDLAWLKILEKMLKKCSYE-VT-TCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHV-GLEMDLPVI 94 (584)
Q Consensus 18 mrVLIVDDd~~~r~~L~~lL~~~gy~-V~-~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~I-r~~~~iPVI 94 (584)
-+|..+|=++...+.++.-++..+.. +. ... +|...+......+|+|.+|- ++.. .+++... +....--++
T Consensus 70 ~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~---Da~~~l~~~~~~fDvIdlDP--fGs~-~~fld~al~~~~~~glL 143 (374)
T TIGR00308 70 REVFANDINPKAVESIKNNVEYNSVENIEVPNE---DAANVLRYRNRKFHVIDIDP--FGTP-APFVDSAIQASAERGLL 143 (374)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEch---hHHHHHHHhCCCCCEEEeCC--CCCc-HHHHHHHHHhcccCCEE
Confidence 47999999999999999998876642 32 233 34444443223499999987 4432 2444443 333344578
Q ss_pred EEEcCC
Q 007940 95 MMSVDG 100 (584)
Q Consensus 95 vlSa~~ 100 (584)
.+|+..
T Consensus 144 ~vTaTD 149 (374)
T TIGR00308 144 LVTATD 149 (374)
T ss_pred EEEecc
Confidence 888653
No 288
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=30.66 E-value=1.5e+02 Score=30.44 Aligned_cols=85 Identities=16% Similarity=0.226 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCCEEEEEcCCChHHHHh
Q 007940 28 AWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMK 107 (584)
Q Consensus 28 ~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVIvlSa~~d~~~~~~ 107 (584)
.....|.+..++.|....+.....++++.+.+ +++-.+=|.-.+.+-+.+++++.. ...|||+=|+-...+.+.+
T Consensus 56 e~~~~L~~~~~~~gi~f~stpfd~~s~d~l~~----~~~~~~KIaS~dl~n~~lL~~~A~-tgkPvIlSTG~stl~EI~~ 130 (241)
T PF03102_consen 56 EQHKELFEYCKELGIDFFSTPFDEESVDFLEE----LGVPAYKIASGDLTNLPLLEYIAK-TGKPVILSTGMSTLEEIER 130 (241)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE-SHHHHHHHHH----HT-SEEEE-GGGTT-HHHHHHHHT-T-S-EEEE-TT--HHHHHH
T ss_pred HHHHHHHHHHHHcCCEEEECCCCHHHHHHHHH----cCCCEEEeccccccCHHHHHHHHH-hCCcEEEECCCCCHHHHHH
Confidence 44566788888889877766667888888866 344456666667788999999853 6789998888766555444
Q ss_pred ---hh-hcCCceEE
Q 007940 108 ---GV-QHGACDYL 117 (584)
Q Consensus 108 ---aL-~~GAdDYL 117 (584)
.+ +.|..+++
T Consensus 131 Av~~~~~~~~~~l~ 144 (241)
T PF03102_consen 131 AVEVLREAGNEDLV 144 (241)
T ss_dssp HHHHHHHHCT--EE
T ss_pred HHHHHHhcCCCCEE
Confidence 44 45666654
No 289
>PRK01362 putative translaldolase; Provisional
Probab=30.64 E-value=2.7e+02 Score=28.11 Aligned_cols=81 Identities=20% Similarity=0.083 Sum_probs=46.7
Q ss_pred HHHhCCCeEE--EECCHHHHHHHHHhcCCCceEEEEec---CCCCCCHHHHHHHHhc----cCCCCEEEEEcCCChHHHH
Q 007940 36 MLKKCSYEVT--TCGLARDALSLLRERKDGYDIVISDV---NMPDMDGFKLLEHVGL----EMDLPVIMMSVDGETSRVM 106 (584)
Q Consensus 36 lL~~~gy~V~--~a~~~~eAL~~L~~~~~~pDLVIlDi---~MPdmdGlELL~~Ir~----~~~iPVIvlSa~~d~~~~~ 106 (584)
.|+..|..|. .+-+...|+.+.... .+.|-.=+ .-.+.||+++++.+.. ...-.-|+..+..+...+.
T Consensus 96 ~L~~~Gi~v~~T~vfs~~Qa~~Aa~aG---a~yispyvgRi~d~g~dg~~~i~~~~~~~~~~~~~tkilaAS~r~~~~v~ 172 (214)
T PRK01362 96 ALSKEGIKTNVTLIFSANQALLAAKAG---ATYVSPFVGRLDDIGTDGMELIEDIREIYDNYGFDTEIIAASVRHPMHVL 172 (214)
T ss_pred HHHHCCCceEEeeecCHHHHHHHHhcC---CcEEEeecchHhhcCCCHHHHHHHHHHHHHHcCCCcEEEEeecCCHHHHH
Confidence 3555564433 444566666655432 33332211 1236789999887632 2222345556667888899
Q ss_pred hhhhcCCceEEeCC
Q 007940 107 KGVQHGACDYLLKP 120 (584)
Q Consensus 107 ~aL~~GAdDYL~KP 120 (584)
++..+|++ +++=|
T Consensus 173 ~~~~~G~d-~iTi~ 185 (214)
T PRK01362 173 EAALAGAD-IATIP 185 (214)
T ss_pred HHHHcCCC-EEecC
Confidence 99999998 44444
No 290
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=30.56 E-value=2.4e+02 Score=29.04 Aligned_cols=57 Identities=16% Similarity=0.246 Sum_probs=43.5
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHHhCCC--eEE-EECCHHHHHHHHHhc---CCCceEEEEecC
Q 007940 16 AGLRVLVVDDDLAWLKILEKMLKKCSY--EVT-TCGLARDALSLLRER---KDGYDIVISDVN 72 (584)
Q Consensus 16 ~gmrVLIVDDd~~~r~~L~~lL~~~gy--~V~-~a~~~~eAL~~L~~~---~~~pDLVIlDi~ 72 (584)
.+-+|.-+|-++...+.-+..+++.|+ .|. ..+++.+.|..+... ...||+|++|..
T Consensus 103 ~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~iFiDad 165 (247)
T PLN02589 103 EDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDFIFVDAD 165 (247)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccEEEecCC
Confidence 355999999999999999999998884 233 567777777766432 245999999986
No 291
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=30.48 E-value=1.2e+02 Score=30.31 Aligned_cols=69 Identities=14% Similarity=0.140 Sum_probs=47.8
Q ss_pred CeEEEECCHHHHHHHHHhcCCCceEEEEecCC---CCCCHHHHHHHHhccCCCCEEEEEcCCChHHHHhhhhcCCceEEe
Q 007940 42 YEVTTCGLARDALSLLRERKDGYDIVISDVNM---PDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLL 118 (584)
Q Consensus 42 y~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~M---PdmdGlELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~ 118 (584)
+.|....+-+++.+++.. +.|+|=+|... | ..--+++++|+... +++|..-...+....|.++|+| +|-
T Consensus 46 ~~V~ITPT~~ev~~l~~a---GadIIAlDaT~R~Rp-~~l~~li~~i~~~~---~l~MADist~ee~~~A~~~G~D-~I~ 117 (192)
T PF04131_consen 46 SDVYITPTLKEVDALAEA---GADIIALDATDRPRP-ETLEELIREIKEKY---QLVMADISTLEEAINAAELGFD-IIG 117 (192)
T ss_dssp SS--BS-SHHHHHHHHHC---T-SEEEEE-SSSS-S-S-HHHHHHHHHHCT---SEEEEE-SSHHHHHHHHHTT-S-EEE
T ss_pred CCeEECCCHHHHHHHHHc---CCCEEEEecCCCCCC-cCHHHHHHHHHHhC---cEEeeecCCHHHHHHHHHcCCC-EEE
Confidence 567766778888887764 37999999965 5 67778888887655 6778888899999999999955 554
No 292
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=30.47 E-value=1.3e+02 Score=30.52 Aligned_cols=39 Identities=18% Similarity=0.336 Sum_probs=32.3
Q ss_pred CCCEEEEEc------CCChHHHHhhhhcCCceEEeCCCCHHHHHH
Q 007940 90 DLPVIMMSV------DGETSRVMKGVQHGACDYLLKPIRMKELRN 128 (584)
Q Consensus 90 ~iPVIvlSa------~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~ 128 (584)
.+|||+|+= ++...++..+-++||.+||+--+.++|-..
T Consensus 95 t~PIiLmgYYNPIl~yG~e~~iq~ak~aGanGfiivDlPpEEa~~ 139 (268)
T KOG4175|consen 95 TCPIILMGYYNPILRYGVENYIQVAKNAGANGFIIVDLPPEEAET 139 (268)
T ss_pred ccceeeeecccHHHhhhHHHHHHHHHhcCCCceEeccCChHHHHH
Confidence 689999974 467788999999999999998888777543
No 293
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=30.41 E-value=1.2e+02 Score=32.60 Aligned_cols=65 Identities=26% Similarity=0.378 Sum_probs=49.9
Q ss_pred CHHHHHHHHHh-cCCCceEEEEecCCCCCCHHHHHHHHhccCCCCEEEEEcCCChHHHHhhhhcCCceE
Q 007940 49 LARDALSLLRE-RKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDY 116 (584)
Q Consensus 49 ~~~eAL~~L~~-~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdDY 116 (584)
+..||+..+.. ..++.|+|++= |.+.=+++++.++...++||...-..++..++..|-+.|..|+
T Consensus 223 n~~eAlre~~~Di~EGAD~lMVK---Pal~YLDIi~~~k~~~~lPvaaYqVSGEYaMikaAa~~G~~d~ 288 (320)
T cd04823 223 NSREALREVALDIAEGADMVMVK---PGMPYLDIIRRVKDEFGVPTFAYQVSGEYAMLKAAAQNGWLDE 288 (320)
T ss_pred CHHHHHHHHHhhHHhCCCEEEEc---CCchHHHHHHHHHHhcCCCEEEEEccHHHHHHHHHHHcCCCcH
Confidence 56777775543 34568999885 5555677888888777899999998899888888888887664
No 294
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=30.38 E-value=66 Score=31.65 Aligned_cols=60 Identities=18% Similarity=0.251 Sum_probs=40.0
Q ss_pred HHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCCEEEEEcCCChHHHHhhhhcCCceE
Q 007940 51 RDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDY 116 (584)
Q Consensus 51 ~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdDY 116 (584)
+.+++.+++.+ ||+|=+ ||+ =-..++++++....+|||.=---.+.+.+.+|+++||...
T Consensus 107 ~~~~~~i~~~~--PD~vEi---lPg-~~p~vi~~i~~~~~~PiIAGGLI~~~e~v~~al~aGa~aV 166 (175)
T PF04309_consen 107 ETGIKQIEQSK--PDAVEI---LPG-VMPKVIKKIREETNIPIIAGGLIRTKEDVEEALKAGADAV 166 (175)
T ss_dssp HHHHHHHHHHT---SEEEE---ESC-CHHHHHCCCCCCCSS-EEEESS--SHHHHHHHCCTTCEEE
T ss_pred HHHHHHHhhcC--CCEEEE---chH-HHHHHHHHHHHhcCCCEEeecccCCHHHHHHHHHcCCEEE
Confidence 45566666655 897765 788 4456777777667889874322367788999999999875
No 295
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=30.33 E-value=5e+02 Score=27.47 Aligned_cols=100 Identities=20% Similarity=0.211 Sum_probs=58.3
Q ss_pred EEEEEe--CCH---HHHHHHHHHHHhCCCeEEEECCHHHHHH-----H--HHhcCCCceEEEEecCCCCCCHH--HHHHH
Q 007940 19 RVLVVD--DDL---AWLKILEKMLKKCSYEVTTCGLARDALS-----L--LRERKDGYDIVISDVNMPDMDGF--KLLEH 84 (584)
Q Consensus 19 rVLIVD--Dd~---~~r~~L~~lL~~~gy~V~~a~~~~eAL~-----~--L~~~~~~pDLVIlDi~MPdmdGl--ELL~~ 84 (584)
+|.||- +.+ ...+.+.+.|++.++++.......+.+. . .......+|+||+ -+.||. .+++.
T Consensus 6 ~v~iv~~~~k~~a~e~~~~i~~~L~~~giev~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~----~GGDGt~l~~~~~ 81 (295)
T PRK01231 6 NIGLIGRLGSSSVVETLRRLKDFLLDRGLEVILDEETAEVLPGHGLQTVSRKLLGEVCDLVIV----VGGDGSLLGAARA 81 (295)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcccCCCEEEE----EeCcHHHHHHHHH
Confidence 588872 223 3455667778888888776543222111 0 0111123677766 366773 33333
Q ss_pred HhccCCCCEEEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHhc
Q 007940 85 VGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 137 (584)
Q Consensus 85 Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrrk 137 (584)
+ ....+||+-+-. |=.+|+. .+..+++..++.+++...
T Consensus 82 ~-~~~~~Pvlgin~-------------G~lGFl~-~~~~~~~~~~l~~~~~g~ 119 (295)
T PRK01231 82 L-ARHNVPVLGINR-------------GRLGFLT-DIRPDELEFKLAEVLDGH 119 (295)
T ss_pred h-cCCCCCEEEEeC-------------Ccccccc-cCCHHHHHHHHHHHHcCC
Confidence 3 235788886642 4456774 688899999999888653
No 296
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=30.28 E-value=3.6e+02 Score=27.05 Aligned_cols=83 Identities=19% Similarity=0.268 Sum_probs=52.1
Q ss_pred HHHHHHHhCCCeEE--EECCHHHHHHHHHhcCCCceEEEEecC------CCCCCHHHHHHHHhccCCCCEEEEEcCCChH
Q 007940 32 ILEKMLKKCSYEVT--TCGLARDALSLLRERKDGYDIVISDVN------MPDMDGFKLLEHVGLEMDLPVIMMSVDGETS 103 (584)
Q Consensus 32 ~L~~lL~~~gy~V~--~a~~~~eAL~~L~~~~~~pDLVIlDi~------MPdmdGlELL~~Ir~~~~iPVIvlSa~~d~~ 103 (584)
.+-..++..+ ... -+.+.+|++.+.+- ++|+|=.=+. .....-++|++++... .+|||.=-....++
T Consensus 83 ~li~~i~~~~-~l~MADist~ee~~~A~~~---G~D~I~TTLsGYT~~t~~~~pD~~lv~~l~~~-~~pvIaEGri~tpe 157 (192)
T PF04131_consen 83 ELIREIKEKY-QLVMADISTLEEAINAAEL---GFDIIGTTLSGYTPYTKGDGPDFELVRELVQA-DVPVIAEGRIHTPE 157 (192)
T ss_dssp HHHHHHHHCT-SEEEEE-SSHHHHHHHHHT---T-SEEE-TTTTSSTTSTTSSHHHHHHHHHHHT-TSEEEEESS--SHH
T ss_pred HHHHHHHHhC-cEEeeecCCHHHHHHHHHc---CCCEEEcccccCCCCCCCCCCCHHHHHHHHhC-CCcEeecCCCCCHH
Confidence 3333444444 333 46678899888764 3897765441 1123468999998654 78877665567889
Q ss_pred HHHhhhhcCCceEEeC
Q 007940 104 RVMKGVQHGACDYLLK 119 (584)
Q Consensus 104 ~~~~aL~~GAdDYL~K 119 (584)
.+.+++++||+..++-
T Consensus 158 ~a~~al~~GA~aVVVG 173 (192)
T PF04131_consen 158 QAAKALELGAHAVVVG 173 (192)
T ss_dssp HHHHHHHTT-SEEEE-
T ss_pred HHHHHHhcCCeEEEEC
Confidence 9999999999998763
No 297
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=30.21 E-value=3.6e+02 Score=31.52 Aligned_cols=99 Identities=14% Similarity=0.122 Sum_probs=67.7
Q ss_pred HHHHHHHHhCCCeEEE--ECCHHHHHHHHHhcCCCceEEEEecCCC-C----CCHHHHHHHH---hccCCCCEEEEEcCC
Q 007940 31 KILEKMLKKCSYEVTT--CGLARDALSLLRERKDGYDIVISDVNMP-D----MDGFKLLEHV---GLEMDLPVIMMSVDG 100 (584)
Q Consensus 31 ~~L~~lL~~~gy~V~~--a~~~~eAL~~L~~~~~~pDLVIlDi~MP-d----mdGlELL~~I---r~~~~iPVIvlSa~~ 100 (584)
...-..|++.|+.+.. ++++...+..+.... +|.|-+|-.+- + .....+++.+ ....++.|| ...-.
T Consensus 681 ~~~l~~l~~~G~~i~ld~fg~~~~~~~~l~~l~--~d~iKid~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vi-a~gVe 757 (799)
T PRK11359 681 FKRIQILRDMGVGLSVDDFGTGFSGLSRLVSLP--VTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTVV-AEGVE 757 (799)
T ss_pred HHHHHHHHHCCCEEEEECCCCchhhHHHHhhCC--CCEEEECHHHHhhcccChhHHHHHHHHHHHHHHCCCeEE-EEcCC
Confidence 3444567888998864 567778888887754 99999998542 1 1234455554 233466655 45556
Q ss_pred ChHHHHhhhhcCCc----eEEeCCCCHHHHHHHHHH
Q 007940 101 ETSRVMKGVQHGAC----DYLLKPIRMKELRNIWQH 132 (584)
Q Consensus 101 d~~~~~~aL~~GAd----DYL~KP~~~~eL~~aI~~ 132 (584)
+.+....+.++|++ .|+.||...++|...++.
T Consensus 758 ~~~~~~~l~~~g~~~~QG~~~~~p~~~~~~~~~~~~ 793 (799)
T PRK11359 758 TKEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSS 793 (799)
T ss_pred CHHHHHHHHhcCCCEEeeCeecCCCCHHHHHHHHHh
Confidence 67777788899987 368899999999886554
No 298
>PRK02228 V-type ATP synthase subunit F; Provisional
Probab=30.19 E-value=2e+02 Score=25.40 Aligned_cols=75 Identities=11% Similarity=0.033 Sum_probs=41.6
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhCCCe-EEEECCHHHHHHHHHhc--CCCceEEEEecCCCCCCHHHHHHHHhccCCCCEE
Q 007940 18 LRVLVVDDDLAWLKILEKMLKKCSYE-VTTCGLARDALSLLRER--KDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVI 94 (584)
Q Consensus 18 mrVLIVDDd~~~r~~L~~lL~~~gy~-V~~a~~~~eAL~~L~~~--~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVI 94 (584)
|||.+|-| +...- -++-.|.. +..+.+.+++.+.+++. ...+.+|++.-.+-..= -+.++++......|+|
T Consensus 1 mkIaVIGD-~dtv~----GFrLaGi~~~~~~~~~ee~~~~l~~l~~~~d~gII~Ite~~~~~i-~e~i~~~~~~~~~P~i 74 (100)
T PRK02228 1 MEIAVIGS-PEFTT----GFRLAGIRKVYEVPDDEKLDEAVEEVLEDDDVGILVMHDDDLEKL-PRRLRRTLEESVEPTV 74 (100)
T ss_pred CEEEEEeC-HHHHH----HHHHcCCceEEeeCCHHHHHHHHHHHhhCCCEEEEEEehhHhHhh-HHHHHHHHhcCCCCEE
Confidence 68889988 43332 33445665 33456655555555432 34588998876542211 2334444345567876
Q ss_pred EEEc
Q 007940 95 MMSV 98 (584)
Q Consensus 95 vlSa 98 (584)
+.-.
T Consensus 75 i~IP 78 (100)
T PRK02228 75 VTLG 78 (100)
T ss_pred EEEC
Confidence 6654
No 299
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=30.19 E-value=1.2e+02 Score=32.52 Aligned_cols=64 Identities=27% Similarity=0.335 Sum_probs=49.6
Q ss_pred CHHHHHHHHHh-cCCCceEEEEecCCCCCCHHHHHHHHhccCCCCEEEEEcCCChHHHHhhhhcCCce
Q 007940 49 LARDALSLLRE-RKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACD 115 (584)
Q Consensus 49 ~~~eAL~~L~~-~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdD 115 (584)
+..||+..... ..++.|+|++= |++.=+++++.++...++||...-..++..++..|...|..|
T Consensus 227 n~~eAlre~~~D~~EGAD~lMVK---Pal~YLDIi~~~k~~~~lPvaaYqVSGEYaMikaAa~~G~~d 291 (322)
T PRK13384 227 NGRQALLEALLDEAEGADILMVK---PGTPYLDVLSRLRQETHLPLAAYQVGGEYAMIKFAALAGALD 291 (322)
T ss_pred CHHHHHHHHHhhHhhCCCEEEEc---CCchHHHHHHHHHhccCCCEEEEEchHHHHHHHHHHHcCCcc
Confidence 56677775543 34568999885 566667888998888899999998888888888888888766
No 300
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=30.13 E-value=3.3e+02 Score=29.93 Aligned_cols=87 Identities=14% Similarity=0.064 Sum_probs=50.0
Q ss_pred CEEEEEeCCHH---HHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecC-CCCCCH--HHHHHHHhcc--C
Q 007940 18 LRVLVVDDDLA---WLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVN-MPDMDG--FKLLEHVGLE--M 89 (584)
Q Consensus 18 mrVLIVDDd~~---~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~-MPdmdG--lELL~~Ir~~--~ 89 (584)
.+|.+|.-|.. ..+.|+.+.+..|..+..+.+..+....+.+.. .+|+||+|.- +...+. .+.++.+... +
T Consensus 168 ~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~-~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~ 246 (374)
T PRK14722 168 SKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELR-NKHMVLIDTIGMSQRDRTVSDQIAMLHGADTP 246 (374)
T ss_pred CeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhc-CCCEEEEcCCCCCcccHHHHHHHHHHhccCCC
Confidence 47888877765 445666666667776766666656555555432 3799999973 332333 2334444221 1
Q ss_pred CCCEEEEEcCCChHHH
Q 007940 90 DLPVIMMSVDGETSRV 105 (584)
Q Consensus 90 ~iPVIvlSa~~d~~~~ 105 (584)
.-.++++++....+.+
T Consensus 247 ~~~lLVLsAts~~~~l 262 (374)
T PRK14722 247 VQRLLLLNATSHGDTL 262 (374)
T ss_pred CeEEEEecCccChHHH
Confidence 2236777776554443
No 301
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=30.09 E-value=1.8e+02 Score=32.33 Aligned_cols=62 Identities=27% Similarity=0.397 Sum_probs=46.3
Q ss_pred CCCCEEEEEeCCHHHHHHHH--HHHHhCC------CeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCH
Q 007940 15 PAGLRVLVVDDDLAWLKILE--KMLKKCS------YEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDG 78 (584)
Q Consensus 15 p~gmrVLIVDDd~~~r~~L~--~lL~~~g------y~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdG 78 (584)
|.-..|-.||=||.+.+.-+ ..|++.+ -+|.++ .++|.+.++..++.||.||+|+.-|...-
T Consensus 311 P~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv--~dDAf~wlr~a~~~fD~vIVDl~DP~tps 380 (508)
T COG4262 311 PQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVV--NDDAFQWLRTAADMFDVVIVDLPDPSTPS 380 (508)
T ss_pred CCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEE--eccHHHHHHhhcccccEEEEeCCCCCCcc
Confidence 44468999999999998887 5565443 135444 35889999987778999999998887553
No 302
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=30.02 E-value=3.5e+02 Score=29.22 Aligned_cols=76 Identities=22% Similarity=0.331 Sum_probs=47.8
Q ss_pred CEEEEEeCCHH----HHHHHHHHHHhCCCeEEEECC---------HHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHH
Q 007940 18 LRVLVVDDDLA----WLKILEKMLKKCSYEVTTCGL---------ARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEH 84 (584)
Q Consensus 18 mrVLIVDDd~~----~r~~L~~lL~~~gy~V~~a~~---------~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~ 84 (584)
-|+|||-|... ..+.+...|+..|..+..+.. ..++.+.+++. .+|+||- .-+..-+++.|.
T Consensus 24 ~r~livt~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~--~~D~IIa---iGGGS~~D~AKa 98 (375)
T cd08194 24 KRPLIVTDKVMVKLGLVDKLTDSLKKEGIESAIFDDVVSEPTDESVEEGVKLAKEG--GCDVIIA---LGGGSPIDTAKA 98 (375)
T ss_pred CeEEEEcCcchhhcchHHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhc--CCCEEEE---eCCchHHHHHHH
Confidence 48999988654 345677888888876655432 34566666654 3898873 345555666655
Q ss_pred Hh------------------ccCCCCEEEEEc
Q 007940 85 VG------------------LEMDLPVIMMSV 98 (584)
Q Consensus 85 Ir------------------~~~~iPVIvlSa 98 (584)
+. ..+.+|+|.+-.
T Consensus 99 ia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPT 130 (375)
T cd08194 99 IAVLATNGGSIRDYKGPRIVDKPGLPLIAIPT 130 (375)
T ss_pred HHHHHhCCCCHHHHhCcccccCCCCCEEEECC
Confidence 42 124679888843
No 303
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=29.98 E-value=3.4e+02 Score=28.12 Aligned_cols=72 Identities=10% Similarity=0.086 Sum_probs=43.8
Q ss_pred HHHHHHHHhcCCCceEEEEecCC----CC---CCHHHHHHHHhccCCCCEEEEEcC-CC-----hHHHHhhhhcCCce-E
Q 007940 51 RDALSLLRERKDGYDIVISDVNM----PD---MDGFKLLEHVGLEMDLPVIMMSVD-GE-----TSRVMKGVQHGACD-Y 116 (584)
Q Consensus 51 ~eAL~~L~~~~~~pDLVIlDi~M----Pd---mdGlELL~~Ir~~~~iPVIvlSa~-~d-----~~~~~~aL~~GAdD-Y 116 (584)
..|++.+... +..+++|+.... |- .--+..+..++...++||++-+.+ .. ......|+.+||++ +
T Consensus 149 ~~Ave~i~~~-Gn~~i~l~~rG~s~y~~~~~~~~dl~~i~~lk~~~~~pV~~ds~Hs~G~r~~~~~~~~aAva~Ga~gl~ 227 (260)
T TIGR01361 149 LYAAEYILSS-GNGNVILCERGIRTFEKATRNTLDLSAVPVLKKETHLPIIVDPSHAAGRRDLVIPLAKAAIAAGADGLM 227 (260)
T ss_pred HHHHHHHHHc-CCCcEEEEECCCCCCCCCCcCCcCHHHHHHHHHhhCCCEEEcCCCCCCccchHHHHHHHHHHcCCCEEE
Confidence 4556666543 346899987522 21 112334445555557999985655 22 45566889999998 7
Q ss_pred EeCCCCH
Q 007940 117 LLKPIRM 123 (584)
Q Consensus 117 L~KP~~~ 123 (584)
|-|-+++
T Consensus 228 iE~H~t~ 234 (260)
T TIGR01361 228 IEVHPDP 234 (260)
T ss_pred EEeCCCc
Confidence 7776543
No 304
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=29.95 E-value=3.3e+02 Score=28.46 Aligned_cols=94 Identities=17% Similarity=0.121 Sum_probs=56.6
Q ss_pred EEEEeCCHHHHHH------HHHHHHhCC--CeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc-CC
Q 007940 20 VLVVDDDLAWLKI------LEKMLKKCS--YEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLE-MD 90 (584)
Q Consensus 20 VLIVDDd~~~r~~------L~~lL~~~g--y~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~-~~ 90 (584)
|||-|.|-.+.-. ++..-+..+ ...+.+.+.+++.++++. ..|.|.+|-.-|. +--++++.++.. ++
T Consensus 155 vlikdnH~~~~g~~~~~~av~~~R~~~~~~~IgVev~t~eea~~A~~~---gaD~I~ld~~~p~-~l~~~~~~~~~~~~~ 230 (272)
T cd01573 155 ILVFAEHRAFLGGPEPLKALARLRATAPEKKIVVEVDSLEEALAAAEA---GADILQLDKFSPE-ELAELVPKLRSLAPP 230 (272)
T ss_pred eEeehhHHHHhCCchHHHHHHHHHHhCCCCeEEEEcCCHHHHHHHHHc---CCCEEEECCCCHH-HHHHHHHHHhccCCC
Confidence 7877776443322 222222222 234467888898887743 4899999965453 112344444433 36
Q ss_pred CCEEEEEcCCChHHHHhhhhcCCceEEe
Q 007940 91 LPVIMMSVDGETSRVMKGVQHGACDYLL 118 (584)
Q Consensus 91 iPVIvlSa~~d~~~~~~aL~~GAdDYL~ 118 (584)
+|+++ ++--+.+.+.+..+.||+.+..
T Consensus 231 i~i~A-sGGI~~~ni~~~~~~Gvd~I~v 257 (272)
T cd01573 231 VLLAA-AGGINIENAAAYAAAGADILVT 257 (272)
T ss_pred ceEEE-ECCCCHHHHHHHHHcCCcEEEE
Confidence 76654 4556778888999999988754
No 305
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=29.93 E-value=6.5e+02 Score=26.17 Aligned_cols=55 Identities=13% Similarity=0.241 Sum_probs=32.2
Q ss_pred HHHHHHHhccCCCCEEEEEcC----CChHHHHhhh-hcCCceEEeCCCC--HHHHHHHHHHHHHh
Q 007940 79 FKLLEHVGLEMDLPVIMMSVD----GETSRVMKGV-QHGACDYLLKPIR--MKELRNIWQHVFRK 136 (584)
Q Consensus 79 lELL~~Ir~~~~iPVIvlSa~----~d~~~~~~aL-~~GAdDYL~KP~~--~~eL~~aI~~vlrr 136 (584)
..+++.+ ...+|+|++... .+.....+.+ +.| .++++.+-+ .++|.+++..++..
T Consensus 263 ~~~~Ea~--~~g~Pvv~~~~~~~~~~~~~~~~~~i~~~~-~g~~~~~~~~~~~~l~~~i~~ll~~ 324 (357)
T PRK00726 263 STVAELA--AAGLPAILVPLPHAADDHQTANARALVDAG-AALLIPQSDLTPEKLAEKLLELLSD 324 (357)
T ss_pred HHHHHHH--HhCCCEEEecCCCCCcCcHHHHHHHHHHCC-CEEEEEcccCCHHHHHHHHHHHHcC
Confidence 4444444 357899877532 2222222333 444 477776655 89999999988753
No 306
>PLN02476 O-methyltransferase
Probab=29.64 E-value=2.3e+02 Score=29.87 Aligned_cols=56 Identities=18% Similarity=0.314 Sum_probs=42.9
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCCe--EE-EECCHHHHHHHHHhc--CCCceEEEEecC
Q 007940 17 GLRVLVVDDDLAWLKILEKMLKKCSYE--VT-TCGLARDALSLLRER--KDGYDIVISDVN 72 (584)
Q Consensus 17 gmrVLIVDDd~~~r~~L~~lL~~~gy~--V~-~a~~~~eAL~~L~~~--~~~pDLVIlDi~ 72 (584)
+-+|.-+|-++...+..+..+++.|+. |. ..+++.+.|..+... ...||+|++|..
T Consensus 143 ~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~VFIDa~ 203 (278)
T PLN02476 143 SGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFAFVDAD 203 (278)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCEEEECCC
Confidence 447999999999999999999999863 33 557777777665321 235999999985
No 307
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=29.56 E-value=3.4e+02 Score=29.25 Aligned_cols=56 Identities=11% Similarity=0.115 Sum_probs=41.8
Q ss_pred ceEEEEecCCCC-CCHHHHHHHHhccCCCCEEEEEcCCChHHHHhhhhcCCceEEeC
Q 007940 64 YDIVISDVNMPD-MDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLK 119 (584)
Q Consensus 64 pDLVIlDi~MPd-mdGlELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~K 119 (584)
.|+|++|..--. ..-++.+++|+...+.|+|+.-.-...+.+..++++||+.+.+-
T Consensus 109 ~d~i~~D~ahg~s~~~~~~i~~i~~~~p~~~vi~GnV~t~e~a~~l~~aGad~I~V~ 165 (321)
T TIGR01306 109 PEYITIDIAHGHSNSVINMIKHIKTHLPDSFVIAGNVGTPEAVRELENAGADATKVG 165 (321)
T ss_pred CCEEEEeCccCchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHcCcCEEEEC
Confidence 699999985433 23467788887666667666665678899999999999988643
No 308
>PRK04148 hypothetical protein; Provisional
Probab=29.55 E-value=3.3e+02 Score=25.67 Aligned_cols=58 Identities=12% Similarity=0.282 Sum_probs=42.5
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCC
Q 007940 16 AGLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMD 77 (584)
Q Consensus 16 ~gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmd 77 (584)
++++||.|-== ..-.+...|.+.|++|+......++.+.+++.. .+++.-|+.-|++.
T Consensus 16 ~~~kileIG~G--fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~--~~~v~dDlf~p~~~ 73 (134)
T PRK04148 16 KNKKIVELGIG--FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLG--LNAFVDDLFNPNLE 73 (134)
T ss_pred cCCEEEEEEec--CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhC--CeEEECcCCCCCHH
Confidence 35678887765 333356677778999998888888888777643 78899999888755
No 309
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=29.49 E-value=3.6e+02 Score=28.39 Aligned_cols=77 Identities=10% Similarity=0.104 Sum_probs=47.9
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCCe-EE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCH--HHHHHHHhccCCCC
Q 007940 17 GLRVLVVDDDLAWLKILEKMLKKCSYE-VT-TCGLARDALSLLRERKDGYDIVISDVNMPDMDG--FKLLEHVGLEMDLP 92 (584)
Q Consensus 17 gmrVLIVDDd~~~r~~L~~lL~~~gy~-V~-~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdG--lELL~~Ir~~~~iP 92 (584)
+.+|+-||-++...+..++.++..+.. +. ...++.+.... ....||+|++| |-..| -++++.|.....-.
T Consensus 195 ~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~---~~~~~D~Vv~d---PPr~G~~~~~~~~l~~~~~~~ 268 (315)
T PRK03522 195 GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATA---QGEVPDLVLVN---PPRRGIGKELCDYLSQMAPRF 268 (315)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHh---cCCCCeEEEEC---CCCCCccHHHHHHHHHcCCCe
Confidence 468999999999999998888777642 32 44555544321 11248999999 33344 35666664332233
Q ss_pred EEEEEcC
Q 007940 93 VIMMSVD 99 (584)
Q Consensus 93 VIvlSa~ 99 (584)
||.+|..
T Consensus 269 ivyvsc~ 275 (315)
T PRK03522 269 ILYSSCN 275 (315)
T ss_pred EEEEECC
Confidence 5555543
No 310
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=29.24 E-value=2.4e+02 Score=27.51 Aligned_cols=61 Identities=18% Similarity=0.196 Sum_probs=42.5
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHHhC--CCeEEEEC----C--HHHHHHHHHhcCCCceEEEEecCCCCCCH
Q 007940 16 AGLRVLVVDDDLAWLKILEKMLKKC--SYEVTTCG----L--ARDALSLLRERKDGYDIVISDVNMPDMDG 78 (584)
Q Consensus 16 ~gmrVLIVDDd~~~r~~L~~lL~~~--gy~V~~a~----~--~~eAL~~L~~~~~~pDLVIlDi~MPdmdG 78 (584)
.+.+|.++-..+...+.+.+.|++. +..+.... . ..+.++.+.+. .+|+|++-+.+|.-.-
T Consensus 47 ~~~~vfllG~~~~v~~~~~~~l~~~yP~l~i~g~~g~f~~~~~~~i~~~I~~s--~~dil~VglG~PkQE~ 115 (177)
T TIGR00696 47 EKLPIFLYGGKPDVLQQLKVKLIKEYPKLKIVGAFGPLEPEERKAALAKIARS--GAGIVFVGLGCPKQEI 115 (177)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHHc--CCCEEEEEcCCcHhHH
Confidence 4689999999999999998888765 23443321 1 12334555553 4999999999998663
No 311
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=29.10 E-value=2.3e+02 Score=28.44 Aligned_cols=69 Identities=17% Similarity=0.186 Sum_probs=49.0
Q ss_pred CCHHHHHHHHHhcCCCce-EEEEecCCCC-C--CHHHHHHHHhccCCCCEEEEEcCCChHHHHhhhhcCCceEEe
Q 007940 48 GLARDALSLLRERKDGYD-IVISDVNMPD-M--DGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLL 118 (584)
Q Consensus 48 ~~~~eAL~~L~~~~~~pD-LVIlDi~MPd-m--dGlELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~ 118 (584)
.+..+..+.+.+. ++| ++++|+.--+ . .-++++++++....+||++--.-.+.+.+.+++..|++..++
T Consensus 27 ~d~~~~a~~~~~~--G~~~i~i~d~~~~~~~~~~~~~~i~~i~~~~~~pv~~~GGI~s~~d~~~~l~~G~~~v~i 99 (243)
T cd04731 27 GDPVELAKRYNEQ--GADELVFLDITASSEGRETMLDVVERVAEEVFIPLTVGGGIRSLEDARRLLRAGADKVSI 99 (243)
T ss_pred CCHHHHHHHHHHC--CCCEEEEEcCCcccccCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCceEEE
Confidence 3666777777654 244 7778886321 1 226778888766779999888778888999999999876654
No 312
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=29.08 E-value=5.3e+02 Score=26.54 Aligned_cols=77 Identities=16% Similarity=0.085 Sum_probs=42.3
Q ss_pred CEEEEEeCCH----HHHHHHHHHHHhCCCeEEE---E----CCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh
Q 007940 18 LRVLVVDDDL----AWLKILEKMLKKCSYEVTT---C----GLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVG 86 (584)
Q Consensus 18 mrVLIVDDd~----~~r~~L~~lL~~~gy~V~~---a----~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir 86 (584)
-||.+|.++. .....++..+++.|.+|.. + .+....+..++.. .+|+|++... ..+...+++.++
T Consensus 142 ~~v~~v~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~l~~~--~~d~i~~~~~--~~~~~~~~~~~~ 217 (345)
T cd06338 142 KKVAILYADDPFSQDVAEGAREKAEAAGLEVVYDETYPPGTADLSPLISKAKAA--GPDAVVVAGH--FPDAVLLVRQMK 217 (345)
T ss_pred ceEEEEecCCcccHHHHHHHHHHHHHcCCEEEEEeccCCCccchHHHHHHHHhc--CCCEEEECCc--chhHHHHHHHHH
Confidence 3555554443 2345566777777877652 1 2334455555543 3888887543 335666777765
Q ss_pred cc-CCCCEEEEEc
Q 007940 87 LE-MDLPVIMMSV 98 (584)
Q Consensus 87 ~~-~~iPVIvlSa 98 (584)
.. ...+++..+.
T Consensus 218 ~~g~~~~~~~~~~ 230 (345)
T cd06338 218 ELGYNPKALYMTV 230 (345)
T ss_pred HcCCCCCEEEEec
Confidence 43 3455655443
No 313
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=29.05 E-value=6.2e+02 Score=26.21 Aligned_cols=98 Identities=13% Similarity=0.075 Sum_probs=59.7
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEE--EECCH-HHHHHHHHhcCCCceEEEE-ec-CCCC------CCHHHHHHHHhcc
Q 007940 20 VLVVDDDLAWLKILEKMLKKCSYEVT--TCGLA-RDALSLLRERKDGYDIVIS-DV-NMPD------MDGFKLLEHVGLE 88 (584)
Q Consensus 20 VLIVDDd~~~r~~L~~lL~~~gy~V~--~a~~~-~eAL~~L~~~~~~pDLVIl-Di-~MPd------mdGlELL~~Ir~~ 88 (584)
|+|.|=.....+.+...+++.|...+ ++.+. .+-++.+.+.. .+.|-+ -. .-.+ .+..+.+++++..
T Consensus 121 viipDLp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~s--~gfIY~vs~~GvTG~~~~~~~~~~~~i~~vk~~ 198 (258)
T PRK13111 121 LIIPDLPPEEAEELRAAAKKHGLDLIFLVAPTTTDERLKKIASHA--SGFVYYVSRAGVTGARSADAADLAELVARLKAH 198 (258)
T ss_pred EEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhC--CCcEEEEeCCCCCCcccCCCccHHHHHHHHHhc
Confidence 45555555566677777788886544 23332 34455555443 333321 11 1111 2345688888877
Q ss_pred CCCCEEEEEcCCChHHHHhhhhcCCceEEeCC
Q 007940 89 MDLPVIMMSVDGETSRVMKGVQHGACDYLLKP 120 (584)
Q Consensus 89 ~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~KP 120 (584)
.++||++=.+-.+.+.+.+++.. |++.++-.
T Consensus 199 ~~~pv~vGfGI~~~e~v~~~~~~-ADGviVGS 229 (258)
T PRK13111 199 TDLPVAVGFGISTPEQAAAIAAV-ADGVIVGS 229 (258)
T ss_pred CCCcEEEEcccCCHHHHHHHHHh-CCEEEEcH
Confidence 78999886666777888887765 99998864
No 314
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=29.01 E-value=1.9e+02 Score=33.03 Aligned_cols=64 Identities=17% Similarity=0.196 Sum_probs=42.0
Q ss_pred HHHHHHHHhcCCCceEEEEecCCCCCC--HHHHHHHHhcc-CCCCEEEEEcCCChHHHHhhhhcCCceEEe
Q 007940 51 RDALSLLRERKDGYDIVISDVNMPDMD--GFKLLEHVGLE-MDLPVIMMSVDGETSRVMKGVQHGACDYLL 118 (584)
Q Consensus 51 ~eAL~~L~~~~~~pDLVIlDi~MPdmd--GlELL~~Ir~~-~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~ 118 (584)
.+-.+.|.+. ..|+|.+|..- +.+ -++.+++|+.. ++.+||+ ..-...+.+..++++||+...+
T Consensus 250 ~~r~~~l~~a--g~d~i~iD~~~-g~~~~~~~~i~~ik~~~p~~~vi~-g~v~t~e~a~~a~~aGaD~i~v 316 (505)
T PLN02274 250 KERLEHLVKA--GVDVVVLDSSQ-GDSIYQLEMIKYIKKTYPELDVIG-GNVVTMYQAQNLIQAGVDGLRV 316 (505)
T ss_pred HHHHHHHHHc--CCCEEEEeCCC-CCcHHHHHHHHHHHHhCCCCcEEE-ecCCCHHHHHHHHHcCcCEEEE
Confidence 3444444443 48999999942 222 24788888764 4566553 3446678889999999998754
No 315
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=28.97 E-value=4.9e+02 Score=25.63 Aligned_cols=52 Identities=23% Similarity=0.288 Sum_probs=35.3
Q ss_pred HHHHHHHHhccCCCCEEEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHH
Q 007940 78 GFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFR 135 (584)
Q Consensus 78 GlELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlr 135 (584)
|..+++.+. ..+|||+ |..... .+.+..|..+++..+.+.+++.+++..++.
T Consensus 277 ~~~~~Ea~~--~G~Pvi~-s~~~~~---~~~i~~~~~g~~~~~~~~~~~~~~i~~l~~ 328 (359)
T cd03808 277 PRVLLEAMA--MGRPVIA-TDVPGC---REAVIDGVNGFLVPPGDAEALADAIERLIE 328 (359)
T ss_pred chHHHHHHH--cCCCEEE-ecCCCc---hhhhhcCcceEEECCCCHHHHHHHHHHHHh
Confidence 455555543 4688875 433332 344555778899999999999999888664
No 316
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=28.91 E-value=1.3e+02 Score=30.37 Aligned_cols=36 Identities=19% Similarity=0.243 Sum_probs=32.9
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHH
Q 007940 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDA 53 (584)
Q Consensus 18 mrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eA 53 (584)
++|.|||-..-++..+.+.|++.|+++....+.++.
T Consensus 2 ~~i~IIDyg~GNL~Sv~~Aler~G~~~~vs~d~~~i 37 (204)
T COG0118 2 MMVAIIDYGSGNLRSVKKALERLGAEVVVSRDPEEI 37 (204)
T ss_pred CEEEEEEcCcchHHHHHHHHHHcCCeeEEecCHHHH
Confidence 689999999999999999999999999988887763
No 317
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=28.91 E-value=2.7e+02 Score=32.37 Aligned_cols=52 Identities=15% Similarity=0.193 Sum_probs=28.7
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhc-cCCCCEEEEEcCCChHHHHhhhhcCCceEEe
Q 007940 64 YDIVISDVNMPDMDGFKLLEHVGL-EMDLPVIMMSVDGETSRVMKGVQHGACDYLL 118 (584)
Q Consensus 64 pDLVIlDi~MPdmdGlELL~~Ir~-~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~ 118 (584)
.++|++-+.-+ .+-..++..+|. .++++||+-+ .+.+...+..++||+..+.
T Consensus 465 A~~vv~~~~d~-~~n~~i~~~~r~~~p~~~IiaRa--~~~~~~~~L~~~Ga~~vv~ 517 (601)
T PRK03659 465 AEAIVITCNEP-EDTMKIVELCQQHFPHLHILARA--RGRVEAHELLQAGVTQFSR 517 (601)
T ss_pred CCEEEEEeCCH-HHHHHHHHHHHHHCCCCeEEEEe--CCHHHHHHHHhCCCCEEEc
Confidence 45555544322 123444555543 3566666544 3445566777889987663
No 318
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=28.76 E-value=1.4e+02 Score=30.96 Aligned_cols=63 Identities=16% Similarity=0.170 Sum_probs=42.2
Q ss_pred HHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCCEEEEEcCCChHHHHhhhhcCCceEEeCCCC
Q 007940 57 LRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIR 122 (584)
Q Consensus 57 L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~KP~~ 122 (584)
+.++. ||++|+=---|...|-.-.|.+-....+|.|+++...... ..++++..-.+||+-+.+
T Consensus 55 ~~~~~--pdf~I~isPN~~~PGP~~ARE~l~~~~iP~IvI~D~p~~k-~kd~l~~~g~GYIivk~D 117 (276)
T PF01993_consen 55 LKEWD--PDFVIVISPNAAAPGPTKAREMLSAKGIPCIVISDAPTKK-AKDALEEEGFGYIIVKAD 117 (276)
T ss_dssp HHHH----SEEEEE-S-TTSHHHHHHHHHHHHSSS-EEEEEEGGGGG-GHHHHHHTT-EEEEETTS
T ss_pred HHhhC--CCEEEEECCCCCCCCcHHHHHHHHhCCCCEEEEcCCCchh-hHHHHHhcCCcEEEEecC
Confidence 44554 8999886656677788888887667899999999765444 467888878888766544
No 319
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=28.74 E-value=1.9e+02 Score=29.76 Aligned_cols=65 Identities=18% Similarity=0.343 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhCCCeEEEECCH-----HHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCCEEEEEcC
Q 007940 29 WLKILEKMLKKCSYEVTTCGLA-----RDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVD 99 (584)
Q Consensus 29 ~r~~L~~lL~~~gy~V~~a~~~-----~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVIvlSa~ 99 (584)
+...+++.+++.||.+..+.+. +++++.+.+.. +|-||+--. ..+ .+-++.+... .+|||++-..
T Consensus 19 ii~gIe~~a~~~Gy~l~l~~t~~~~~~e~~i~~l~~~~--vDGiI~~s~--~~~-~~~l~~~~~~-~iPvV~~~~~ 88 (279)
T PF00532_consen 19 IIRGIEQEAREHGYQLLLCNTGDDEEKEEYIELLLQRR--VDGIILASS--END-DEELRRLIKS-GIPVVLIDRY 88 (279)
T ss_dssp HHHHHHHHHHHTTCEEEEEEETTTHHHHHHHHHHHHTT--SSEEEEESS--SCT-CHHHHHHHHT-TSEEEEESS-
T ss_pred HHHHHHHHHHHcCCEEEEecCCCchHHHHHHHHHHhcC--CCEEEEecc--cCC-hHHHHHHHHc-CCCEEEEEec
Confidence 4456777788899987754422 25666666644 777777532 223 3334444323 7898887544
No 320
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=28.71 E-value=1e+02 Score=30.25 Aligned_cols=67 Identities=15% Similarity=0.262 Sum_probs=45.5
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCC----CHHHH------HHHHhc
Q 007940 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDM----DGFKL------LEHVGL 87 (584)
Q Consensus 18 mrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdm----dGlEL------L~~Ir~ 87 (584)
|+|+|||----....+...|++.|+++..+.+..+ +. .+|.||+ |+- +.+.. .+.++.
T Consensus 1 m~i~iid~g~gn~~s~~~~l~~~g~~~~~v~~~~~----~~----~~d~iIl----PG~G~~~~~~~~l~~~~l~~~i~~ 68 (196)
T PRK13170 1 MNVVIIDTGCANLSSVKFAIERLGYEPVVSRDPDV----IL----AADKLFL----PGVGTAQAAMDQLRERELIDLIKA 68 (196)
T ss_pred CeEEEEeCCCchHHHHHHHHHHCCCeEEEECCHHH----hC----CCCEEEE----CCCCchHHHHHHHHHcChHHHHHH
Confidence 68999998888888899999999999988877643 21 2677775 662 22222 233332
Q ss_pred cCCCCEEEEE
Q 007940 88 EMDLPVIMMS 97 (584)
Q Consensus 88 ~~~iPVIvlS 97 (584)
...||+=++
T Consensus 69 -~~~PilGIC 77 (196)
T PRK13170 69 -CTQPVLGIC 77 (196)
T ss_pred -cCCCEEEEC
Confidence 357887665
No 321
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=28.60 E-value=5.9e+02 Score=27.15 Aligned_cols=100 Identities=21% Similarity=0.291 Sum_probs=58.7
Q ss_pred EEEEEeC--CH---HHHHHHHHHHHhCCCeEEEECCHHHHHHH----------------HHhcCCCceEEEEecCCCCCC
Q 007940 19 RVLVVDD--DL---AWLKILEKMLKKCSYEVTTCGLARDALSL----------------LRERKDGYDIVISDVNMPDMD 77 (584)
Q Consensus 19 rVLIVDD--d~---~~r~~L~~lL~~~gy~V~~a~~~~eAL~~----------------L~~~~~~pDLVIlDi~MPdmd 77 (584)
+|+||-. .+ ...+.|...|++.|++|.........+.. .......+|+||+ -|.|
T Consensus 7 ~I~iv~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~----lGGD 82 (306)
T PRK03372 7 RVLLVAHTGRDEATEAARRVAKQLGDAGIGVRVLDAEAVDLGATHPAPDDFRAMEVVDADPDAADGCELVLV----LGGD 82 (306)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEeechhhhhcccccccccccccccccchhhcccCCCEEEE----EcCC
Confidence 5888733 22 34566777778888888765432222110 0111112566665 3678
Q ss_pred H--HHHHHHHhccCCCCEEEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHhc
Q 007940 78 G--FKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 137 (584)
Q Consensus 78 G--lELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrrk 137 (584)
| +..++.+. ...+||+-+- .|-.+||.- +..+++..+++++++..
T Consensus 83 GT~L~aar~~~-~~~~PilGIN-------------~G~lGFL~~-~~~~~~~~~l~~i~~g~ 129 (306)
T PRK03372 83 GTILRAAELAR-AADVPVLGVN-------------LGHVGFLAE-AEAEDLDEAVERVVDRD 129 (306)
T ss_pred HHHHHHHHHhc-cCCCcEEEEe-------------cCCCceecc-CCHHHHHHHHHHHHcCC
Confidence 8 34444432 3578887654 355678874 77889999999888654
No 322
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=28.53 E-value=2e+02 Score=28.42 Aligned_cols=66 Identities=15% Similarity=0.170 Sum_probs=42.4
Q ss_pred EEecCCCCCCHHHHHHHHhccCCCCEEEEEcCCChHHHHhhhhcCCceEEe--CCCCHHHHHHHHHHH
Q 007940 68 ISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLL--KPIRMKELRNIWQHV 133 (584)
Q Consensus 68 IlDi~MPdmdGlELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~--KP~~~~eL~~aI~~v 133 (584)
++|...--...++.++.++....+||++...-.+...+..+++.||+..++ .-+..+.+...++..
T Consensus 50 v~~~~~~~~g~~~~~~~i~~~v~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~~~~~~~~~~~~~~ 117 (217)
T cd00331 50 VLTEPKYFQGSLEDLRAVREAVSLPVLRKDFIIDPYQIYEARAAGADAVLLIVAALDDEQLKELYELA 117 (217)
T ss_pred EEeCccccCCCHHHHHHHHHhcCCCEEECCeecCHHHHHHHHHcCCCEEEEeeccCCHHHHHHHHHHH
Confidence 344433333457788888766789999765445556788899999999872 223335555555444
No 323
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=28.29 E-value=3.7e+02 Score=28.03 Aligned_cols=90 Identities=13% Similarity=-0.000 Sum_probs=56.9
Q ss_pred EEEEEeCCHHHHHHH----HHHHHhCC---CeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-c-C
Q 007940 19 RVLVVDDDLAWLKIL----EKMLKKCS---YEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGL-E-M 89 (584)
Q Consensus 19 rVLIVDDd~~~r~~L----~~lL~~~g---y~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~-~-~ 89 (584)
.|||.|+|-.+.-.+ ..+=+..+ ...+.+.+.+++.+++.. .+|.|.+|-.- .+.++++.. . .
T Consensus 154 ~vlikdnHi~~~g~i~~~v~~~r~~~~~~~~Igvev~s~eea~~A~~~---gaDyI~ld~~~-----~e~l~~~~~~~~~ 225 (268)
T cd01572 154 AVLIKDNHIAAAGSITEAVRRARAAAPFTLKIEVEVETLEQLKEALEA---GADIIMLDNMS-----PEELREAVALLKG 225 (268)
T ss_pred eeeeehHHHHHhCCHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHc---CCCEEEECCcC-----HHHHHHHHHHcCC
Confidence 578888875544322 22222333 234578889998888753 38999999532 455555432 2 2
Q ss_pred CCCEEEEEcCCChHHHHhhhhcCCceEE
Q 007940 90 DLPVIMMSVDGETSRVMKGVQHGACDYL 117 (584)
Q Consensus 90 ~iPVIvlSa~~d~~~~~~aL~~GAdDYL 117 (584)
++|+++ ++--..+.+.+..+.|++.+-
T Consensus 226 ~ipi~A-iGGI~~~ni~~~a~~Gvd~Ia 252 (268)
T cd01572 226 RVLLEA-SGGITLENIRAYAETGVDYIS 252 (268)
T ss_pred CCcEEE-ECCCCHHHHHHHHHcCCCEEE
Confidence 577654 455667888888999988653
No 324
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=28.13 E-value=4.2e+02 Score=28.44 Aligned_cols=78 Identities=18% Similarity=0.227 Sum_probs=49.3
Q ss_pred CCEEEEEeCCHHHH-----HHHHHHHHhCCCeEEEECC---------HHHHHHHHHhcCCCceEEEEecCCCCCCHHHHH
Q 007940 17 GLRVLVVDDDLAWL-----KILEKMLKKCSYEVTTCGL---------ARDALSLLRERKDGYDIVISDVNMPDMDGFKLL 82 (584)
Q Consensus 17 gmrVLIVDDd~~~r-----~~L~~lL~~~gy~V~~a~~---------~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL 82 (584)
+-|+|||-|..... +.+...|+..|.++..+.. ..++.+.+++.+ +|+||- .-+..-+++.
T Consensus 25 g~r~lvVt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~--~D~IIa---vGGGSviD~a 99 (357)
T cd08181 25 GKRALIVTGKSSAKKNGSLDDVTKALEELGIEYEIFDEVEENPSLETIMEAVEIAKKFN--ADFVIG---IGGGSPLDAA 99 (357)
T ss_pred CCEEEEEeCCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcC--CCEEEE---eCCchHHHHH
Confidence 35999999876533 6688888888876665432 345666666544 898874 3455555655
Q ss_pred HHHh-----------------ccCCCCEEEEEcC
Q 007940 83 EHVG-----------------LEMDLPVIMMSVD 99 (584)
Q Consensus 83 ~~Ir-----------------~~~~iPVIvlSa~ 99 (584)
+.+. ..+.+|+|.+-..
T Consensus 100 K~ia~~~~~~~~~~~~~~~~~~~~~~P~i~VPTt 133 (357)
T cd08181 100 KAIAVLIKNPDLKVELYFRSKYLKALPVVAIPTT 133 (357)
T ss_pred HHHHHHHhCCCcHHHHhcccccCCCCCEEEEeCC
Confidence 5432 1236788887543
No 325
>KOG1601 consensus GATA-4/5/6 transcription factors [Transcription]
Probab=28.08 E-value=9 Score=38.02 Aligned_cols=111 Identities=24% Similarity=0.270 Sum_probs=71.4
Q ss_pred EEEeCCHHHHHHHHHHHHhCCC----eEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc---cCCCCE
Q 007940 21 LVVDDDLAWLKILEKMLKKCSY----EVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGL---EMDLPV 93 (584)
Q Consensus 21 LIVDDd~~~r~~L~~lL~~~gy----~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~---~~~iPV 93 (584)
+.+|++...+..+..++....+ .........+ ....... ..+|+++-+..||++.|+.++..+.. ...+|+
T Consensus 19 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (340)
T KOG1601|consen 19 LNADDSLLDISVDARLSASNSLAFPHEPTRLSSSPE-SFVAATS-FSIDLSVPSLDMPGLEGFSLFVSENNPNSLRHPPV 96 (340)
T ss_pred cccccccCCcccccccccccccccccccccccchhh-hhhcccc-ccccccccccccccccccccccccccCCCCCCCCc
Confidence 8888887777777777765422 1222222211 1111100 34899999999999999999888753 235566
Q ss_pred EEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHH
Q 007940 94 IMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHV 133 (584)
Q Consensus 94 IvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~v 133 (584)
+++............+..|+.+|+.||....++...+.++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 136 (340)
T KOG1601|consen 97 PSMPSSNSSSSSSSSVSPSASLELTKPDRKNRLKRSRQHV 136 (340)
T ss_pred ccccccccchhhhcccCCcccccccccccCCCcccCCccc
Confidence 6666555555567788888999999999855555544443
No 326
>smart00426 TEA TEA domain.
Probab=28.06 E-value=62 Score=27.08 Aligned_cols=19 Identities=37% Similarity=0.536 Sum_probs=16.6
Q ss_pred cccchhHHHHHHHHHHHhc
Q 007940 203 VVWSIDLHQKFVKAVNQIG 221 (584)
Q Consensus 203 vvws~eLhqkFv~av~~iG 221 (584)
-+|.+++...|++|+..+-
T Consensus 4 ~vWp~~lE~Af~~aL~~~~ 22 (68)
T smart00426 4 GVWSPDIEQAFQEALAIYP 22 (68)
T ss_pred CcCcHHHHHHHHHHHHHcC
Confidence 3799999999999999874
No 327
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=28.02 E-value=4e+02 Score=29.04 Aligned_cols=63 Identities=22% Similarity=0.241 Sum_probs=41.0
Q ss_pred CEEEEEeCCHH----HHHHHHHHHHhCCCeEEEEC---------CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHH
Q 007940 18 LRVLVVDDDLA----WLKILEKMLKKCSYEVTTCG---------LARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEH 84 (584)
Q Consensus 18 mrVLIVDDd~~----~r~~L~~lL~~~gy~V~~a~---------~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~ 84 (584)
-|+|||-|... ..+.+...|++.|..+..+. +.+++.+.+++.+ +|+||- .-|.+-++..|.
T Consensus 32 ~~~livt~~~~~~~g~~~~v~~~L~~~~i~~~~f~~v~~np~~~~v~~~~~~~~~~~--~D~Iia---iGGGS~iD~AK~ 106 (383)
T PRK09860 32 TRTLIVTDNMLTKLGMAGDVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLLKENN--CDSVIS---LGGGSPHDCAKG 106 (383)
T ss_pred CEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHHcC--CCEEEE---eCCchHHHHHHH
Confidence 48999988643 45578888888886655443 2356666766644 899873 345555665555
Q ss_pred H
Q 007940 85 V 85 (584)
Q Consensus 85 I 85 (584)
+
T Consensus 107 i 107 (383)
T PRK09860 107 I 107 (383)
T ss_pred H
Confidence 4
No 328
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=27.83 E-value=69 Score=31.23 Aligned_cols=74 Identities=15% Similarity=0.193 Sum_probs=46.3
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecC--CCCCCH--HHHHHHHhccCCCCEEE
Q 007940 20 VLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVN--MPDMDG--FKLLEHVGLEMDLPVIM 95 (584)
Q Consensus 20 VLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~--MPdmdG--lELL~~Ir~~~~iPVIv 95 (584)
|||||..-..-..|.++|++.|.++.++......++.+... .||.||+-=. -|...+ .++++.+ ...+||+-
T Consensus 2 il~idn~Dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~~--~~d~iils~GPg~p~~~~~~~~~~~~~--~~~~PiLG 77 (187)
T PRK08007 2 ILLIDNYDSFTWNLYQYFCELGADVLVKRNDALTLADIDAL--KPQKIVISPGPCTPDEAGISLDVIRHY--AGRLPILG 77 (187)
T ss_pred EEEEECCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHHhc--CCCEEEEcCCCCChHHCCccHHHHHHh--cCCCCEEE
Confidence 89999999899999999999998877665532223333332 3788777431 122223 2334332 35689887
Q ss_pred EE
Q 007940 96 MS 97 (584)
Q Consensus 96 lS 97 (584)
++
T Consensus 78 IC 79 (187)
T PRK08007 78 VC 79 (187)
T ss_pred EC
Confidence 75
No 329
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=27.64 E-value=6.4e+02 Score=27.82 Aligned_cols=100 Identities=17% Similarity=0.114 Sum_probs=56.9
Q ss_pred CCCEEEEEeCCHH---HHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecC--CCCCCHHH---HHHHHhc
Q 007940 16 AGLRVLVVDDDLA---WLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVN--MPDMDGFK---LLEHVGL 87 (584)
Q Consensus 16 ~gmrVLIVDDd~~---~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~--MPdmdGlE---LL~~Ir~ 87 (584)
.+.+|++|+-|.. ....++.+.+..|..+..+.+..+....+... ..+|+||+|.- ++ .+-.. +.+.+..
T Consensus 205 ~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~-~~~DlVLIDTaGr~~-~~~~~l~el~~~l~~ 282 (388)
T PRK12723 205 KSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS-KDFDLVLVDTIGKSP-KDFMKLAEMKELLNA 282 (388)
T ss_pred CCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh-CCCCEEEEcCCCCCc-cCHHHHHHHHHHHHh
Confidence 3578998888764 23345555555676677777766665555554 35899999984 33 23332 2222222
Q ss_pred c-CC-CCEEEEEcCCChHHHHhhhh----cCCceEE
Q 007940 88 E-MD-LPVIMMSVDGETSRVMKGVQ----HGACDYL 117 (584)
Q Consensus 88 ~-~~-iPVIvlSa~~d~~~~~~aL~----~GAdDYL 117 (584)
. ++ -.++++++......+.+.+. .|.+.+|
T Consensus 283 ~~~~~e~~LVlsat~~~~~~~~~~~~~~~~~~~~~I 318 (388)
T PRK12723 283 CGRDAEFHLAVSSTTKTSDVKEIFHQFSPFSYKTVI 318 (388)
T ss_pred cCCCCeEEEEEcCCCCHHHHHHHHHHhcCCCCCEEE
Confidence 1 23 34677777665554444432 3556654
No 330
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=27.43 E-value=3.5e+02 Score=29.08 Aligned_cols=98 Identities=18% Similarity=0.028 Sum_probs=56.1
Q ss_pred EEEEEeCCHHHHHHHHHH-------HHhCCC---eEEEECCHHHHHHHHHh---cCCCceEEEEecC--CCC---CCHHH
Q 007940 19 RVLVVDDDLAWLKILEKM-------LKKCSY---EVTTCGLARDALSLLRE---RKDGYDIVISDVN--MPD---MDGFK 80 (584)
Q Consensus 19 rVLIVDDd~~~r~~L~~l-------L~~~gy---~V~~a~~~~eAL~~L~~---~~~~pDLVIlDi~--MPd---mdGlE 80 (584)
.|||=|.|-...-.+... ++..++ ..+.+.+.+++.+++.- .+.++|+|++|=+ -|. .+--+
T Consensus 172 ~vLIKdNHi~~~G~i~~av~~~r~~~~~~~~~~kIeVEv~tleea~ea~~~~~~~~agaDiImLDnm~~~~~~~~~~~e~ 251 (308)
T PLN02716 172 MVMIKDNHIAAAGGITNAVQSADKYLEEKGLSMKIEVETRTLEEVKEVLEYLSDTKTSLTRVMLDNMVVPLENGDVDVSM 251 (308)
T ss_pred eEEEcHhHHHhhCCHHHHHHHHHHhhhhcCCCeeEEEEECCHHHHHHHHHhcccccCCCCEEEeCCCcccccccCCCHHH
Confidence 367777665444333332 323333 34477889999998871 1124899999954 122 12222
Q ss_pred HHHHHhccCCCCEEEEEcCCChHHHHhhhhcCCceE
Q 007940 81 LLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDY 116 (584)
Q Consensus 81 LL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdDY 116 (584)
+-+.+........|-.|+.-..+.+.+....|+|-.
T Consensus 252 l~~av~~~~~~~~lEaSGGIt~~ni~~yA~tGVD~I 287 (308)
T PLN02716 252 LKEAVELINGRFETEASGNVTLDTVHKIGQTGVTYI 287 (308)
T ss_pred HHHHHHhhCCCceEEEECCCCHHHHHHHHHcCCCEE
Confidence 333232222233477788888888888888887643
No 331
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=27.35 E-value=6.9e+02 Score=28.07 Aligned_cols=55 Identities=18% Similarity=0.269 Sum_probs=31.4
Q ss_pred CCCEEEEEeCCHHH---HHHHHHHHHhCCCeEEEEC---C----HHHHHHHHHhcCCCceEEEEecC
Q 007940 16 AGLRVLVVDDDLAW---LKILEKMLKKCSYEVTTCG---L----ARDALSLLRERKDGYDIVISDVN 72 (584)
Q Consensus 16 ~gmrVLIVDDd~~~---r~~L~~lL~~~gy~V~~a~---~----~~eAL~~L~~~~~~pDLVIlDi~ 72 (584)
.|.+|++|+-|+.- .+.|+.+-+..+..+.... + +.++++.++. ..+|+||+|.-
T Consensus 127 ~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~~--~~~DvViIDTa 191 (429)
T TIGR01425 127 KGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFKK--ENFDIIIVDTS 191 (429)
T ss_pred CCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHHh--CCCCEEEEECC
Confidence 36689999887643 3333434444454444322 2 1245555544 24899999984
No 332
>PRK05637 anthranilate synthase component II; Provisional
Probab=27.29 E-value=1e+02 Score=30.80 Aligned_cols=75 Identities=12% Similarity=0.220 Sum_probs=45.3
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEE--ecCCCCCCHHHHHHHHhc-cCCCCEEE
Q 007940 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVIS--DVNMPDMDGFKLLEHVGL-EMDLPVIM 95 (584)
Q Consensus 19 rVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIl--Di~MPdmdGlELL~~Ir~-~~~iPVIv 95 (584)
||||||-.-.+-..|.+.|+..|+.+.++..... ++.+... .||.||+ --.-|...+ +..+.++. ...+||+-
T Consensus 3 ~il~iD~~dsf~~nl~~~l~~~g~~~~v~~~~~~-~~~l~~~--~~~~iIlsgGPg~~~d~~-~~~~li~~~~~~~PiLG 78 (208)
T PRK05637 3 HVVLIDNHDSFVYNLVDAFAVAGYKCTVFRNTVP-VEEILAA--NPDLICLSPGPGHPRDAG-NMMALIDRTLGQIPLLG 78 (208)
T ss_pred EEEEEECCcCHHHHHHHHHHHCCCcEEEEeCCCC-HHHHHhc--CCCEEEEeCCCCCHHHhh-HHHHHHHHHhCCCCEEE
Confidence 7999999888888999999999987776654322 2333222 3788887 222221111 11222321 23689887
Q ss_pred EE
Q 007940 96 MS 97 (584)
Q Consensus 96 lS 97 (584)
++
T Consensus 79 IC 80 (208)
T PRK05637 79 IC 80 (208)
T ss_pred Ec
Confidence 75
No 333
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=27.15 E-value=1e+03 Score=27.83 Aligned_cols=102 Identities=18% Similarity=0.176 Sum_probs=54.3
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCCEEE
Q 007940 18 LRVLVVDDDLAWLKILEKMLKKCSY--EVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIM 95 (584)
Q Consensus 18 mrVLIVDDd~~~r~~L~~lL~~~gy--~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVIv 95 (584)
.+++||-|-+ .+..++...+..|. .|...+.-.+....+.. .|+.++=- .-+.-|..+++.+. ..+|||.
T Consensus 430 irLvIVGdG~-~~eeLk~la~elgL~d~V~FlG~~~Dv~~~Laa----ADVfVlPS-~~EGfp~vlLEAMA--~GlPVVA 501 (578)
T PRK15490 430 TRFVLVGDGD-LRAEAQKRAEQLGILERILFVGASRDVGYWLQK----MNVFILFS-RYEGLPNVLIEAQM--VGVPVIS 501 (578)
T ss_pred eEEEEEeCch-hHHHHHHHHHHcCCCCcEEECCChhhHHHHHHh----CCEEEEcc-cccCccHHHHHHHH--hCCCEEE
Confidence 4555555543 23344444444442 24433333333333332 45655522 12334566666653 5689984
Q ss_pred EEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHH
Q 007940 96 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQ 131 (584)
Q Consensus 96 lSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~ 131 (584)
|..+. ..+.+..|..+|+.+|.+...+.+++.
T Consensus 502 -TdvGG---~~EiV~dG~nG~LVp~~D~~aLa~ai~ 533 (578)
T PRK15490 502 -TPAGG---SAECFIEGVSGFILDDAQTVNLDQACR 533 (578)
T ss_pred -eCCCC---cHHHcccCCcEEEECCCChhhHHHHHH
Confidence 33333 235566899999999998877766543
No 334
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=27.12 E-value=6.9e+02 Score=25.55 Aligned_cols=108 Identities=20% Similarity=0.291 Sum_probs=59.0
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhCC--CeEEEECC--HHHHHHHHHhcCCCceEEEEecCC-C----CCCHHHHHHHHhc
Q 007940 17 GLRVLVVDDDLAWLKILEKMLKKCS--YEVTTCGL--ARDALSLLRERKDGYDIVISDVNM-P----DMDGFKLLEHVGL 87 (584)
Q Consensus 17 gmrVLIVDDd~~~r~~L~~lL~~~g--y~V~~a~~--~~eAL~~L~~~~~~pDLVIlDi~M-P----dmdGlELL~~Ir~ 87 (584)
+.+++||-+.+. ...++...+..| ..|...+. ..+....+.. .|++++--.. + ..-|..+++.+.
T Consensus 219 ~~~l~ivG~g~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~----ad~~v~ps~~~~~~~~E~~~~~~~EA~a- 292 (367)
T cd05844 219 EVRLVIIGDGPL-LAALEALARALGLGGRVTFLGAQPHAEVRELMRR----ARIFLQPSVTAPSGDAEGLPVVLLEAQA- 292 (367)
T ss_pred CeEEEEEeCchH-HHHHHHHHHHcCCCCeEEECCCCCHHHHHHHHHh----CCEEEECcccCCCCCccCCchHHHHHHH-
Confidence 345666665432 234455555433 23333222 2334444433 3565542211 1 112566666653
Q ss_pred cCCCCEEEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHH
Q 007940 88 EMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFR 135 (584)
Q Consensus 88 ~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlr 135 (584)
..+|||. +.... ..+.+..|..+++..|-+.++|.+++.+++.
T Consensus 293 -~G~PvI~-s~~~~---~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~ 335 (367)
T cd05844 293 -SGVPVVA-TRHGG---IPEAVEDGETGLLVPEGDVAALAAALGRLLA 335 (367)
T ss_pred -cCCCEEE-eCCCC---chhheecCCeeEEECCCCHHHHHHHHHHHHc
Confidence 5688885 33332 3345566778899999999999999988765
No 335
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=27.12 E-value=3.1e+02 Score=24.40 Aligned_cols=60 Identities=13% Similarity=0.151 Sum_probs=37.2
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhccCCCCEEEEEcCCChHHHHhhhhcCCceEEeCCCC--HHHHHH
Q 007940 64 YDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIR--MKELRN 128 (584)
Q Consensus 64 pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~KP~~--~~eL~~ 128 (584)
...|++-- .+|......-+..+.+|||++|........ -.+-.|+.-++.++.. .+++..
T Consensus 17 ak~Ivv~T----~sG~ta~~isk~RP~~pIiavt~~~~~~r~-l~l~~GV~p~~~~~~~~~~~~~~~ 78 (117)
T PF02887_consen 17 AKAIVVFT----ESGRTARLISKYRPKVPIIAVTPNESVARQ-LSLYWGVYPVLIEEFDKDTEELIA 78 (117)
T ss_dssp ESEEEEE-----SSSHHHHHHHHT-TSSEEEEEESSHHHHHH-GGGSTTEEEEECSSHSHSHHHHHH
T ss_pred CCEEEEEC----CCchHHHHHHhhCCCCeEEEEcCcHHHHhh-hhcccceEEEEeccccccHHHHHH
Confidence 45666543 255544333355689999999987654433 4478899998887766 444443
No 336
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=27.11 E-value=1.5e+02 Score=36.29 Aligned_cols=72 Identities=15% Similarity=0.263 Sum_probs=48.8
Q ss_pred CceEEEEe-cCCCCCCHHHHHHHHhccCC--CCEEEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 007940 63 GYDIVISD-VNMPDMDGFKLLEHVGLEMD--LPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 136 (584)
Q Consensus 63 ~pDLVIlD-i~MPdmdGlELL~~Ir~~~~--iPVIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrr 136 (584)
.+-|+|+| ++|-..+.+..+.++.+.+. +.+|+. ..+...+...+..-..-|-.||++.+++...+++++..
T Consensus 119 k~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILa--TTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~ 193 (944)
T PRK14949 119 RFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLA--TTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQ 193 (944)
T ss_pred CcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEE--CCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHH
Confidence 36799998 66666566666555444443 444444 34445556666666677899999999999999887765
No 337
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=27.10 E-value=2.2e+02 Score=27.59 Aligned_cols=89 Identities=12% Similarity=0.116 Sum_probs=56.9
Q ss_pred HHHHHHHhCCCeEEE--ECCHHHHHHHHHhcCCCceEEEEecCCCC-----CCHHHHHHHHh---ccCCCCEEEEEcCCC
Q 007940 32 ILEKMLKKCSYEVTT--CGLARDALSLLRERKDGYDIVISDVNMPD-----MDGFKLLEHVG---LEMDLPVIMMSVDGE 101 (584)
Q Consensus 32 ~L~~lL~~~gy~V~~--a~~~~eAL~~L~~~~~~pDLVIlDi~MPd-----mdGlELL~~Ir---~~~~iPVIvlSa~~d 101 (584)
.+-..|+..|+.+.. ++.+...++.+.... ||.|-+|..+.. .....+++.+. ....++|| ++.-.+
T Consensus 136 ~~~~~l~~~G~~l~ld~~g~~~~~~~~l~~~~--~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vi-a~gVe~ 212 (240)
T cd01948 136 ATLRRLRALGVRIALDDFGTGYSSLSYLKRLP--VDYLKIDRSFVRDIETDPEDRAIVRAIIALAHSLGLKVV-AEGVET 212 (240)
T ss_pred HHHHHHHHCCCeEEEeCCCCcHhhHHHHHhCC--CCEEEECHHHHHhHhcChhhHHHHHHHHHHHHHCCCeEE-EEecCC
Confidence 345556778988775 445566667777654 999999975431 22345555542 23455555 566677
Q ss_pred hHHHHhhhhcCCc----eEEeCCCCH
Q 007940 102 TSRVMKGVQHGAC----DYLLKPIRM 123 (584)
Q Consensus 102 ~~~~~~aL~~GAd----DYL~KP~~~ 123 (584)
.+....+.++|++ .|+.||...
T Consensus 213 ~~~~~~~~~~gi~~~QG~~~~~p~~~ 238 (240)
T cd01948 213 EEQLELLRELGCDYVQGYLFSRPLPA 238 (240)
T ss_pred HHHHHHHHHcCCCeeeeceeccCCCC
Confidence 7778888899985 356677653
No 338
>PRK05670 anthranilate synthase component II; Provisional
Probab=27.02 E-value=80 Score=30.63 Aligned_cols=74 Identities=15% Similarity=0.180 Sum_probs=43.6
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEec-CC-CCC--CHHHHHHHHhccCCCCEEE
Q 007940 20 VLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDV-NM-PDM--DGFKLLEHVGLEMDLPVIM 95 (584)
Q Consensus 20 VLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi-~M-Pdm--dGlELL~~Ir~~~~iPVIv 95 (584)
|||||-.-..-..+.+.|++.|+.+............+... .||.||+-= -+ |.. .-.++++.+ ...+||+-
T Consensus 2 iliid~~d~f~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~--~~dglIlsgGpg~~~d~~~~~~~l~~~--~~~~PvLG 77 (189)
T PRK05670 2 ILLIDNYDSFTYNLVQYLGELGAEVVVYRNDEITLEEIEAL--NPDAIVLSPGPGTPAEAGISLELIREF--AGKVPILG 77 (189)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEECCCCCHHHHHhC--CCCEEEEcCCCCChHHcchHHHHHHHh--cCCCCEEE
Confidence 89999999999999999999998877654432112222222 278777720 00 110 112333332 24689887
Q ss_pred EE
Q 007940 96 MS 97 (584)
Q Consensus 96 lS 97 (584)
++
T Consensus 78 IC 79 (189)
T PRK05670 78 VC 79 (189)
T ss_pred EC
Confidence 75
No 339
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=27.00 E-value=5.4e+02 Score=25.18 Aligned_cols=93 Identities=11% Similarity=0.095 Sum_probs=55.4
Q ss_pred EEeCCHHHHHHHHHHHHhCCCeEEE-E---C----CHHHHHHHHHhcCCCceEEEEecCC----C-CCCHHHHHHHHhcc
Q 007940 22 VVDDDLAWLKILEKMLKKCSYEVTT-C---G----LARDALSLLRERKDGYDIVISDVNM----P-DMDGFKLLEHVGLE 88 (584)
Q Consensus 22 IVDDd~~~r~~L~~lL~~~gy~V~~-a---~----~~~eAL~~L~~~~~~pDLVIlDi~M----P-dmdGlELL~~Ir~~ 88 (584)
+..+.....+.++.+-+..+..+.+ . . ...+.+..+.+. +.|.|.+.-.. + ..-.++.++.++..
T Consensus 104 l~~~~~~~~eii~~v~~~~~~~v~vk~r~~~~~~~~~~~~~~~l~~~--Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~ 181 (231)
T cd02801 104 LLKDPELVAEIVRAVREAVPIPVTVKIRLGWDDEEETLELAKALEDA--GASALTVHGRTREQRYSGPADWDYIAEIKEA 181 (231)
T ss_pred hcCCHHHHHHHHHHHHHhcCCCEEEEEeeccCCchHHHHHHHHHHHh--CCCEEEECCCCHHHcCCCCCCHHHHHHHHhC
Confidence 3345555667777776665532221 1 1 122333344432 36777654431 1 12347778888777
Q ss_pred CCCCEEEEEcCCChHHHHhhhhc-CCceE
Q 007940 89 MDLPVIMMSVDGETSRVMKGVQH-GACDY 116 (584)
Q Consensus 89 ~~iPVIvlSa~~d~~~~~~aL~~-GAdDY 116 (584)
.++|||..-.-.+.+.+.+++.. ||+..
T Consensus 182 ~~ipvi~~Ggi~~~~d~~~~l~~~gad~V 210 (231)
T cd02801 182 VSIPVIANGDIFSLEDALRCLEQTGVDGV 210 (231)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHhcCCCEE
Confidence 78999987777788889999998 66654
No 340
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=26.96 E-value=2.6e+02 Score=28.70 Aligned_cols=67 Identities=13% Similarity=0.272 Sum_probs=46.3
Q ss_pred HHHHHHHHHhcCCCceEEEEecCCCCC-CH--HHHHHHHhccCCCCEEEEEcCCChHHHHhhh-hcCCceEE
Q 007940 50 ARDALSLLRERKDGYDIVISDVNMPDM-DG--FKLLEHVGLEMDLPVIMMSVDGETSRVMKGV-QHGACDYL 117 (584)
Q Consensus 50 ~~eAL~~L~~~~~~pDLVIlDi~MPdm-dG--lELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL-~~GAdDYL 117 (584)
..+..+.+.+.. .-.+++.|+.--++ .| ++++++++....+|||.--.-.+.+.+.+++ ..|+++.+
T Consensus 154 ~~e~~~~~~~~g-~~~ii~~~i~~~G~~~G~d~~~i~~~~~~~~ipvIasGGv~s~eD~~~l~~~~GvdgVi 224 (258)
T PRK01033 154 PLELAKEYEALG-AGEILLNSIDRDGTMKGYDLELLKSFRNALKIPLIALGGAGSLDDIVEAILNLGADAAA 224 (258)
T ss_pred HHHHHHHHHHcC-CCEEEEEccCCCCCcCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHHCCCCEEE
Confidence 345555555432 12477788753322 23 6778888777789999887788888999988 78998865
No 341
>cd06304 PBP1_BmpA_like Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. These outer membrane proteins include Med, a cell-surface localized protein regulating the competence transcription factor gene comK in Bacillus subtilis, and PnrA, a periplasmic purine nucleoside binding protein of an ATP-binding cassette (ABC) transport system in Treponema pallidum. All contain the type I periplasmic sugar-binding protein-like fold.
Probab=26.89 E-value=3.5e+02 Score=26.81 Aligned_cols=68 Identities=18% Similarity=0.036 Sum_probs=36.5
Q ss_pred CHHHH---HHHHHHHHhCCCeEEEECC--HH---HHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCCEEEEE
Q 007940 26 DLAWL---KILEKMLKKCSYEVTTCGL--AR---DALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMS 97 (584)
Q Consensus 26 d~~~r---~~L~~lL~~~gy~V~~a~~--~~---eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVIvlS 97 (584)
++.+. ..+++.+++.||.+..... .. +.++.+... .+|.||+ +|....-.+.+.+.....+||+++.
T Consensus 13 ~~f~~~l~~gi~~~~~~~gy~~~~~~~~~~~~~~~~~~~l~~~--~vdgiii---~~~~~~~~~~~~~~~~~~ipvv~~~ 87 (260)
T cd06304 13 KSFNQSAYEGLEKAEKELGVEVKYVESVEDADYEPNLRQLAAQ--GYDLIFG---VGFGFMDAVEKVAKEYPDVKFAIID 87 (260)
T ss_pred chHHHHHHHHHHHHHHhcCceEEEEecCCHHHHHHHHHHHHHc--CCCEEEE---CCcchhHHHHHHHHHCCCCEEEEec
Confidence 45544 5566777888998775432 22 334444443 3887766 2322122333333333467888875
Q ss_pred c
Q 007940 98 V 98 (584)
Q Consensus 98 a 98 (584)
.
T Consensus 88 ~ 88 (260)
T cd06304 88 G 88 (260)
T ss_pred C
Confidence 4
No 342
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=26.84 E-value=3.3e+02 Score=27.82 Aligned_cols=74 Identities=22% Similarity=0.232 Sum_probs=43.9
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCC----eEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHH-HHHHHHhccCCC
Q 007940 17 GLRVLVVDDDLAWLKILEKMLKKCSY----EVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGF-KLLEHVGLEMDL 91 (584)
Q Consensus 17 gmrVLIVDDd~~~r~~L~~lL~~~gy----~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGl-ELL~~Ir~~~~i 91 (584)
|=|++-|-++...+....+.|...|. ++++....++++..+. ..|.+++|... .|-. ++++.++..+.-
T Consensus 69 gGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~~----~iDF~vVDc~~--~d~~~~vl~~~~~~~~G 142 (218)
T PF07279_consen 69 GGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPGLK----GIDFVVVDCKR--EDFAARVLRAAKLSPRG 142 (218)
T ss_pred CCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhhcc----CCCEEEEeCCc--hhHHHHHHHHhccCCCc
Confidence 44666666666666667777766663 2233333556665553 38999999984 3445 677776654444
Q ss_pred CEEEE
Q 007940 92 PVIMM 96 (584)
Q Consensus 92 PVIvl 96 (584)
.||+.
T Consensus 143 aVVV~ 147 (218)
T PF07279_consen 143 AVVVC 147 (218)
T ss_pred eEEEE
Confidence 44443
No 343
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=26.76 E-value=92 Score=32.46 Aligned_cols=58 Identities=16% Similarity=0.294 Sum_probs=0.0
Q ss_pred HHHHHHHHh-ccCCCCEEEEE------cCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHH
Q 007940 78 GFKLLEHVG-LEMDLPVIMMS------VDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFR 135 (584)
Q Consensus 78 GlELL~~Ir-~~~~iPVIvlS------a~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlr 135 (584)
.++++++++ ....+|+|+|+ ..+-...+.+|-++|+++.|+--+..++-......+.+
T Consensus 74 ~~~~~~~ir~~~~~~pivlm~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP~ee~~~~~~~~~~ 138 (259)
T PF00290_consen 74 IFELVKEIRKKEPDIPIVLMTYYNPIFQYGIERFFKEAKEAGVDGLIIPDLPPEESEELREAAKK 138 (259)
T ss_dssp HHHHHHHHHHHCTSSEEEEEE-HHHHHHH-HHHHHHHHHHHTEEEEEETTSBGGGHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCCEEEEeeccHHhccchHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHH
No 344
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=26.57 E-value=3.7e+02 Score=28.94 Aligned_cols=68 Identities=12% Similarity=0.170 Sum_probs=44.9
Q ss_pred HHHHHHHHHhc-CCCceEEEEecCC------CCCCH--HHHHHHHhccCCCCEEEEEcCCChHHHHhhhhcCCceEE
Q 007940 50 ARDALSLLRER-KDGYDIVISDVNM------PDMDG--FKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYL 117 (584)
Q Consensus 50 ~~eAL~~L~~~-~~~pDLVIlDi~M------PdmdG--lELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL 117 (584)
.++++++++.. +.++|.|-+...+ +...| .++++.++....+|||....-.+.+.+.++++.|..|++
T Consensus 226 ~~e~~~i~~~l~~~gvD~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~~ipVi~~G~i~~~~~a~~~l~~g~~D~V 302 (337)
T PRK13523 226 VQDYVQYAKWMKEQGVDLIDVSSGAVVPARIDVYPGYQVPFAEHIREHANIATGAVGLITSGAQAEEILQNNRADLI 302 (337)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccHHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcCCCChH
Confidence 45555544332 1237877665543 11234 567788877778999988777788889999999877764
No 345
>PRK04457 spermidine synthase; Provisional
Probab=26.47 E-value=3.2e+02 Score=28.19 Aligned_cols=53 Identities=8% Similarity=0.081 Sum_probs=37.4
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhCC--CeEE-EECCHHHHHHHHHhcCCCceEEEEecC
Q 007940 17 GLRVLVVDDDLAWLKILEKMLKKCS--YEVT-TCGLARDALSLLRERKDGYDIVISDVN 72 (584)
Q Consensus 17 gmrVLIVDDd~~~r~~L~~lL~~~g--y~V~-~a~~~~eAL~~L~~~~~~pDLVIlDi~ 72 (584)
+.+|.+||=++.+.+..++.+...+ -.+. ..+++.+.+.. ....||+|++|..
T Consensus 90 ~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~---~~~~yD~I~~D~~ 145 (262)
T PRK04457 90 DTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAV---HRHSTDVILVDGF 145 (262)
T ss_pred CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHh---CCCCCCEEEEeCC
Confidence 5689999999999999988876432 2332 44666665543 2345999999973
No 346
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=26.46 E-value=4.2e+02 Score=28.67 Aligned_cols=63 Identities=16% Similarity=0.292 Sum_probs=39.8
Q ss_pred CEEEEEeCCHHH----HHHHHHHHHhCCCeEEEECC---------HHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHH
Q 007940 18 LRVLVVDDDLAW----LKILEKMLKKCSYEVTTCGL---------ARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEH 84 (584)
Q Consensus 18 mrVLIVDDd~~~----r~~L~~lL~~~gy~V~~a~~---------~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~ 84 (584)
-|+|||-|.... .+.+...|+..|..+..+.. ..++.+.+++. .+|+||- .-+..-+++.|.
T Consensus 29 ~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~p~~~~v~~~~~~~~~~--~~D~IIa---vGGGS~iD~aK~ 103 (377)
T cd08176 29 KKALIVTDKGLVKIGVVEKVTDVLDEAGIDYVIYDGVKPNPTITNVKDGLAVFKKE--GCDFIIS---IGGGSPHDCAKA 103 (377)
T ss_pred CeEEEECCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhc--CCCEEEE---eCCcHHHHHHHH
Confidence 489999886553 35678888887776665532 34555555554 3898873 345555665555
Q ss_pred H
Q 007940 85 V 85 (584)
Q Consensus 85 I 85 (584)
+
T Consensus 104 i 104 (377)
T cd08176 104 I 104 (377)
T ss_pred H
Confidence 4
No 347
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=26.31 E-value=3.6e+02 Score=27.23 Aligned_cols=68 Identities=19% Similarity=0.137 Sum_probs=51.3
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEecCCC-------CCCHHHHHHHHhccCCCCEEEEEcCCChHHHHhhhhcCCceEE
Q 007940 46 TCGLARDALSLLRERKDGYDIVISDVNMP-------DMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYL 117 (584)
Q Consensus 46 ~a~~~~eAL~~L~~~~~~pDLVIlDi~MP-------dmdGlELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL 117 (584)
++.+.+++.++.+. .+|-|.+----| .-.|++.++.++....+|++.+-+ -+.+.+.+.++.||+..-
T Consensus 110 S~h~~eea~~A~~~---g~DYv~~GpifpT~tK~~~~~~G~~~l~~~~~~~~iP~vAIGG-i~~~nv~~v~~~Ga~gVA 184 (211)
T COG0352 110 STHDLEEALEAEEL---GADYVGLGPIFPTSTKPDAPPLGLEGLREIRELVNIPVVAIGG-INLENVPEVLEAGADGVA 184 (211)
T ss_pred ecCCHHHHHHHHhc---CCCEEEECCcCCCCCCCCCCccCHHHHHHHHHhCCCCEEEEcC-CCHHHHHHHHHhCCCeEE
Confidence 56677888777654 278888765433 456899999887777799998865 456788899999999763
No 348
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=26.29 E-value=8e+02 Score=27.20 Aligned_cols=61 Identities=20% Similarity=0.260 Sum_probs=36.3
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHHhCCC--eEEEE-------------------CCHHHHHHHHHhcCCCceEEEEecCCC
Q 007940 16 AGLRVLVVDDDLAWLKILEKMLKKCSY--EVTTC-------------------GLARDALSLLRERKDGYDIVISDVNMP 74 (584)
Q Consensus 16 ~gmrVLIVDDd~~~r~~L~~lL~~~gy--~V~~a-------------------~~~~eAL~~L~~~~~~pDLVIlDi~MP 74 (584)
+.||||||..-..-..+...+.+. ++ .+.++ .+.++.++.+++. .+|+|+...+-|
T Consensus 3 ~~~kvLviG~g~rehal~~~~~~~-~~~~~~~~~pgn~g~~~~~~~~~~~~~~~d~~~l~~~a~~~--~iD~Vv~g~E~~ 79 (426)
T PRK13789 3 VKLKVLLIGSGGRESAIAFALRKS-NLLSELKVFPGNGGFPDDELLPADSFSILDKSSVQSFLKSN--PFDLIVVGPEDP 79 (426)
T ss_pred CCcEEEEECCCHHHHHHHHHHHhC-CCCCEEEEECCchHHhccccccccCcCcCCHHHHHHHHHHc--CCCEEEECCchH
Confidence 358999999988776666666543 31 22221 2334444555553 499999876555
Q ss_pred CCCHH
Q 007940 75 DMDGF 79 (584)
Q Consensus 75 dmdGl 79 (584)
-..|+
T Consensus 80 l~~gl 84 (426)
T PRK13789 80 LVAGF 84 (426)
T ss_pred HHHHH
Confidence 44443
No 349
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=26.25 E-value=3.8e+02 Score=28.59 Aligned_cols=91 Identities=13% Similarity=0.001 Sum_probs=56.4
Q ss_pred EEEEEeCCHHHHHHHHHHHHh---C-C--CeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCC
Q 007940 19 RVLVVDDDLAWLKILEKMLKK---C-S--YEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLP 92 (584)
Q Consensus 19 rVLIVDDd~~~r~~L~~lL~~---~-g--y~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iP 92 (584)
.|||=|.|-...-.+...++. . + ...+.+.+.+++.+++.. ++|+|++|=+-|+ +--+.++.++ ...
T Consensus 178 ~vLIkdNHi~~~G~i~~av~~~r~~~~~~kIeVEvetleea~eA~~a---GaDiImLDnmspe-~l~~av~~~~---~~~ 250 (294)
T PRK06978 178 GILIKENHIAAAGGVGAALDAAFALNAGVPVQIEVETLAQLETALAH---GAQSVLLDNFTLD-MMREAVRVTA---GRA 250 (294)
T ss_pred eEEEeHHHHHHhCCHHHHHHHHHHhCCCCcEEEEcCCHHHHHHHHHc---CCCEEEECCCCHH-HHHHHHHhhc---CCe
Confidence 477777776555444444422 1 1 233467889999998864 3899999954332 2223333332 234
Q ss_pred EEEEEcCCChHHHHhhhhcCCceE
Q 007940 93 VIMMSVDGETSRVMKGVQHGACDY 116 (584)
Q Consensus 93 VIvlSa~~d~~~~~~aL~~GAdDY 116 (584)
+|-.|+.-..+.+.+....|+|-.
T Consensus 251 ~lEaSGGIt~~ni~~yA~tGVD~I 274 (294)
T PRK06978 251 VLEVSGGVNFDTVRAFAETGVDRI 274 (294)
T ss_pred EEEEECCCCHHHHHHHHhcCCCEE
Confidence 667787788888888888887743
No 350
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=26.21 E-value=2.5e+02 Score=31.22 Aligned_cols=54 Identities=15% Similarity=0.102 Sum_probs=40.4
Q ss_pred CceEEEEecCCCC-CCHHHHHHHHhcc-CCCCEEEEEcCCChHHHHhhhhcCCceEE
Q 007940 63 GYDIVISDVNMPD-MDGFKLLEHVGLE-MDLPVIMMSVDGETSRVMKGVQHGACDYL 117 (584)
Q Consensus 63 ~pDLVIlDi~MPd-mdGlELL~~Ir~~-~~iPVIvlSa~~d~~~~~~aL~~GAdDYL 117 (584)
.+|+|.+|..-+. ..-.+++++|+.. ++++|| +..-...+.+..++++||+...
T Consensus 165 GvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi-~g~V~T~e~a~~l~~aGaD~I~ 220 (404)
T PRK06843 165 HVDILVIDSAHGHSTRIIELVKKIKTKYPNLDLI-AGNIVTKEAALDLISVGADCLK 220 (404)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHHhhCCCCcEE-EEecCCHHHHHHHHHcCCCEEE
Confidence 4999999998764 4556888888754 566654 4445667888899999998765
No 351
>CHL00101 trpG anthranilate synthase component 2
Probab=26.13 E-value=78 Score=30.84 Aligned_cols=74 Identities=16% Similarity=0.264 Sum_probs=44.2
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEec--CCCCCCHH--HHHHHHhccCCCCEEE
Q 007940 20 VLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDV--NMPDMDGF--KLLEHVGLEMDLPVIM 95 (584)
Q Consensus 20 VLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi--~MPdmdGl--ELL~~Ir~~~~iPVIv 95 (584)
|||||-.-..-..|.+.|++.|..+..+......+..+... .||.||+-= .-|..++. ++++.+ ...+||+-
T Consensus 2 iliid~~dsft~~l~~~l~~~g~~~~v~~~~~~~~~~~~~~--~~dgiiisgGpg~~~~~~~~~~i~~~~--~~~~PiLG 77 (190)
T CHL00101 2 ILIIDNYDSFTYNLVQSLGELNSDVLVCRNDEIDLSKIKNL--NIRHIIISPGPGHPRDSGISLDVISSY--APYIPILG 77 (190)
T ss_pred EEEEECCCchHHHHHHHHHhcCCCEEEEECCCCCHHHHhhC--CCCEEEECCCCCChHHCcchHHHHHHh--cCCCcEEE
Confidence 89999999999999999999998877665432122222222 378777521 11111221 222222 35789887
Q ss_pred EE
Q 007940 96 MS 97 (584)
Q Consensus 96 lS 97 (584)
++
T Consensus 78 IC 79 (190)
T CHL00101 78 VC 79 (190)
T ss_pred Ec
Confidence 65
No 352
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=26.03 E-value=4.1e+02 Score=23.47 Aligned_cols=22 Identities=23% Similarity=0.117 Sum_probs=13.1
Q ss_pred eCCHHHHHHHHHHHHhCCCeEE
Q 007940 24 DDDLAWLKILEKMLKKCSYEVT 45 (584)
Q Consensus 24 DDd~~~r~~L~~lL~~~gy~V~ 45 (584)
|.+......+...|...||.+.
T Consensus 8 d~~K~~~~~~a~~l~~~G~~i~ 29 (112)
T cd00532 8 DHVKAMLVDLAPKLSSDGFPLF 29 (112)
T ss_pred cccHHHHHHHHHHHHHCCCEEE
Confidence 3344455555666667787775
No 353
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=25.94 E-value=3.1e+02 Score=26.91 Aligned_cols=65 Identities=17% Similarity=0.162 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHhCCCeEEEECCH------HHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCCEEEEEc
Q 007940 28 AWLKILEKMLKKCSYEVTTCGLA------RDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSV 98 (584)
Q Consensus 28 ~~r~~L~~lL~~~gy~V~~a~~~------~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVIvlSa 98 (584)
.+...+++.+++.||.+...... .++++.+... .+|.||+....+. . ..++.+. ...+|||++-.
T Consensus 16 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~--~~dgiii~~~~~~--~-~~~~~~~-~~~ipvV~i~~ 86 (270)
T cd06296 16 EVLRGVEEAAAAAGYDVVLSESGRRTSPERQWVERLSAR--RTDGVILVTPELT--S-AQRAALR-RTGIPFVVVDP 86 (270)
T ss_pred HHHHHHHHHHHHcCCeEEEecCCCchHHHHHHHHHHHHc--CCCEEEEecCCCC--h-HHHHHHh-cCCCCEEEEec
Confidence 45566777888889988754432 2445555553 3898887544433 2 3355553 35789998853
No 354
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=25.94 E-value=3.8e+02 Score=27.91 Aligned_cols=87 Identities=18% Similarity=0.232 Sum_probs=52.4
Q ss_pred CEEEEEeC----CHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHH--HHHHHHhcc-CC
Q 007940 18 LRVLVVDD----DLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGF--KLLEHVGLE-MD 90 (584)
Q Consensus 18 mrVLIVDD----d~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGl--ELL~~Ir~~-~~ 90 (584)
|+|.|+-. .....+.+.+.|+..|+++. . ..+|+||+ -|.||- ..++.+... ..
T Consensus 1 M~i~Ii~~~~~~~~~~~~~l~~~l~~~g~~~~-------------~--~~~Dlvi~----iGGDGT~L~a~~~~~~~~~~ 61 (265)
T PRK04885 1 MKVAIISNGDPKSKRVASKLKKYLKDFGFILD-------------E--KNPDIVIS----VGGDGTLLSAFHRYENQLDK 61 (265)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHcCCccC-------------C--cCCCEEEE----ECCcHHHHHHHHHhcccCCC
Confidence 45666622 22244556666766676531 0 13788876 367873 233333221 47
Q ss_pred CCEEEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHhc
Q 007940 91 LPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 137 (584)
Q Consensus 91 iPVIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrrk 137 (584)
+||+-+- .|-.+|+. .+..+++..++.+++...
T Consensus 62 iPilGIN-------------~G~lGFL~-~~~~~~~~~~l~~i~~g~ 94 (265)
T PRK04885 62 VRFVGVH-------------TGHLGFYT-DWRPFEVDKLVIALAKDP 94 (265)
T ss_pred CeEEEEe-------------CCCceecc-cCCHHHHHHHHHHHHcCC
Confidence 7877553 46778998 688889988888887653
No 355
>COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]
Probab=25.91 E-value=4.6e+02 Score=27.32 Aligned_cols=91 Identities=16% Similarity=0.146 Sum_probs=60.1
Q ss_pred HHHHHHHhCCCeEEEECCHH--HHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc---cCCCCEEEEEcCCChHHHH
Q 007940 32 ILEKMLKKCSYEVTTCGLAR--DALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGL---EMDLPVIMMSVDGETSRVM 106 (584)
Q Consensus 32 ~L~~lL~~~gy~V~~a~~~~--eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~---~~~iPVIvlSa~~d~~~~~ 106 (584)
.++.-|+.-...+.....-. =..+.+.. .+||.+++|.+--..|.-.++..++. .+..|||=+. .++...+.
T Consensus 7 ~fK~~L~~g~~qiGlw~~l~~p~~~Ei~A~--aGfDwl~iD~EHapnd~~sl~~qL~a~~~~~~~pvVR~p-~g~~~~Ik 83 (255)
T COG3836 7 SFKAALAAGRPQIGLWLSLPDPYMAEILAT--AGFDWLLIDGEHAPNDLQSLLHQLQAVAAYASPPVVRPP-VGDPVMIK 83 (255)
T ss_pred hHHHHHhCCCceEEeeecCCcHHHHHHHHh--cCCCEEEecccccCccHHHHHHHHHHhhccCCCCeeeCC-CCCHHHHH
Confidence 35566664333443322221 22334444 34999999999888888888888753 3456776554 56788999
Q ss_pred hhhhcCCceEEeCCCCHHH
Q 007940 107 KGVQHGACDYLLKPIRMKE 125 (584)
Q Consensus 107 ~aL~~GAdDYL~KP~~~~e 125 (584)
++++.||...|+-=++..|
T Consensus 84 q~LD~GAqtlliPmV~s~e 102 (255)
T COG3836 84 QLLDIGAQTLLIPMVDTAE 102 (255)
T ss_pred HHHccccceeeeeccCCHH
Confidence 9999999999986555433
No 356
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=25.86 E-value=1.6e+02 Score=31.64 Aligned_cols=64 Identities=22% Similarity=0.356 Sum_probs=49.4
Q ss_pred CHHHHHHHHHh-cCCCceEEEEecCCCCCCHHHHHHHHhccC-CCCEEEEEcCCChHHHHhhhhcCCce
Q 007940 49 LARDALSLLRE-RKDGYDIVISDVNMPDMDGFKLLEHVGLEM-DLPVIMMSVDGETSRVMKGVQHGACD 115 (584)
Q Consensus 49 ~~~eAL~~L~~-~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~-~iPVIvlSa~~d~~~~~~aL~~GAdD 115 (584)
+.+||+..+.. ..++.|+|++= |.+.=+++++.++... ++||...-..++..++..|-..|..|
T Consensus 223 n~~eAlre~~~D~~EGAD~lMVK---Pal~YLDIi~~~k~~~~~~PvaaYqVSGEYaMikaAa~~G~iD 288 (320)
T cd04824 223 ARGLALRAVERDVSEGADMIMVK---PGTPYLDIVREAKDKHPDLPLAVYHVSGEYAMLHAAAEAGAFD 288 (320)
T ss_pred CHHHHHHHHHhhHHhCCCEEEEc---CCchHHHHHHHHHHhccCCCEEEEEccHHHHHHHHHHHcCCCc
Confidence 56777776443 34568999885 5666677888888766 99999998889888888888888766
No 357
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=25.76 E-value=3.4e+02 Score=28.95 Aligned_cols=77 Identities=18% Similarity=0.293 Sum_probs=48.0
Q ss_pred CCEEEEEeCCHH---HHHHHHHHHHhCCCeEEE--E------CCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHH
Q 007940 17 GLRVLVVDDDLA---WLKILEKMLKKCSYEVTT--C------GLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHV 85 (584)
Q Consensus 17 gmrVLIVDDd~~---~r~~L~~lL~~~gy~V~~--a------~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~I 85 (584)
+-|+|||-|... ..+.+...|+..|..+.. + .+..++.+.+++. .+|+||- +-+..-+++.+.+
T Consensus 22 ~~r~livt~~~~~~~~~~~v~~~L~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~~--~~D~IIa---vGGGS~iD~aK~i 96 (351)
T cd08170 22 GKRALIIADEFVLDLVGAKIEESLAAAGIDARFEVFGGECTRAEIERLAEIARDN--GADVVIG---IGGGKTLDTAKAV 96 (351)
T ss_pred CCeEEEEECHHHHHHHHHHHHHHHHhCCCeEEEEEeCCcCCHHHHHHHHHHHhhc--CCCEEEE---ecCchhhHHHHHH
Confidence 358999998655 334455667766654321 1 1234566666553 3898774 5566777888777
Q ss_pred hccCCCCEEEEEc
Q 007940 86 GLEMDLPVIMMSV 98 (584)
Q Consensus 86 r~~~~iPVIvlSa 98 (584)
.....+|+|.+..
T Consensus 97 a~~~~~P~iaIPT 109 (351)
T cd08170 97 ADYLGAPVVIVPT 109 (351)
T ss_pred HHHcCCCEEEeCC
Confidence 5555788888743
No 358
>PRK10481 hypothetical protein; Provisional
Probab=25.76 E-value=4.1e+02 Score=27.19 Aligned_cols=76 Identities=14% Similarity=0.140 Sum_probs=43.8
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCCeEEEEC------CHHHHHHHHHhc-CCCceEEEEecCCCCCCHHHHHHHHhccC
Q 007940 17 GLRVLVVDDDLAWLKILEKMLKKCSYEVTTCG------LARDALSLLRER-KDGYDIVISDVNMPDMDGFKLLEHVGLEM 89 (584)
Q Consensus 17 gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~------~~~eAL~~L~~~-~~~pDLVIlDi~MPdmdGlELL~~Ir~~~ 89 (584)
+-||-|+--.+.......+.....|+++..+. +.....++.++- ..+.|+|++|.. ++.. +..+.+...-
T Consensus 129 g~riGVitP~~~qi~~~~~kw~~~G~~v~~~~aspy~~~~~~l~~aa~~L~~~gaD~Ivl~C~--G~~~-~~~~~le~~l 205 (224)
T PRK10481 129 GHQVGVIVPVEEQLAQQAQKWQVLQKPPVFALASPYHGSEEELIDAGKELLDQGADVIVLDCL--GYHQ-RHRDLLQKAL 205 (224)
T ss_pred CCeEEEEEeCHHHHHHHHHHHHhcCCceeEeecCCCCCCHHHHHHHHHHhhcCCCCEEEEeCC--CcCH-HHHHHHHHHH
Confidence 45787777777776665555555588766433 222333333321 134899999874 3332 4445555556
Q ss_pred CCCEEE
Q 007940 90 DLPVIM 95 (584)
Q Consensus 90 ~iPVIv 95 (584)
.+|||.
T Consensus 206 g~PVI~ 211 (224)
T PRK10481 206 DVPVLL 211 (224)
T ss_pred CcCEEc
Confidence 788874
No 359
>PLN02335 anthranilate synthase
Probab=25.73 E-value=82 Score=31.71 Aligned_cols=78 Identities=13% Similarity=0.096 Sum_probs=44.4
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCH-HHHHHHHHhcCCCceEEEEecC--CCCCCHHHHHHHHhc-cCCC
Q 007940 16 AGLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLA-RDALSLLRERKDGYDIVISDVN--MPDMDGFKLLEHVGL-EMDL 91 (584)
Q Consensus 16 ~gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~-~eAL~~L~~~~~~pDLVIlDi~--MPdmdGlELL~~Ir~-~~~i 91 (584)
.+.+|||||-.-..-..|.+.|++.|+.+.++... .++ +.+... .||.||+-=. -|.-.|. .++.++. ...+
T Consensus 17 ~~~~ilviD~~dsft~~i~~~L~~~g~~~~v~~~~~~~~-~~~~~~--~~d~iVisgGPg~p~d~~~-~~~~~~~~~~~~ 92 (222)
T PLN02335 17 QNGPIIVIDNYDSFTYNLCQYMGELGCHFEVYRNDELTV-EELKRK--NPRGVLISPGPGTPQDSGI-SLQTVLELGPLV 92 (222)
T ss_pred ccCcEEEEECCCCHHHHHHHHHHHCCCcEEEEECCCCCH-HHHHhc--CCCEEEEcCCCCChhhccc-hHHHHHHhCCCC
Confidence 35699999965556677899999999877765432 122 222222 3777776321 1221221 2333432 3468
Q ss_pred CEEEEE
Q 007940 92 PVIMMS 97 (584)
Q Consensus 92 PVIvlS 97 (584)
||+-++
T Consensus 93 PiLGIC 98 (222)
T PLN02335 93 PLFGVC 98 (222)
T ss_pred CEEEec
Confidence 988765
No 360
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=25.52 E-value=6.1e+02 Score=25.86 Aligned_cols=52 Identities=23% Similarity=0.253 Sum_probs=35.5
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEec
Q 007940 17 GLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDV 71 (584)
Q Consensus 17 gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi 71 (584)
+.+|..||-++...+..+.-++..+.++.. .+..+.+.... ...+|+|++|.
T Consensus 110 ~~~v~~vDis~~al~~A~~N~~~~~~~~~~-~D~~~~l~~~~--~~~fDlVv~NP 161 (251)
T TIGR03704 110 GIELHAADIDPAAVRCARRNLADAGGTVHE-GDLYDALPTAL--RGRVDILAANA 161 (251)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCEEEE-eechhhcchhc--CCCEeEEEECC
Confidence 468999999999999999888877755543 33333332111 13499999985
No 361
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=25.51 E-value=4.3e+02 Score=25.66 Aligned_cols=65 Identities=15% Similarity=0.172 Sum_probs=39.1
Q ss_pred HHHHHHHHHHhCCCeEEEECC---HH---HHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCCEEEEEc
Q 007940 29 WLKILEKMLKKCSYEVTTCGL---AR---DALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSV 98 (584)
Q Consensus 29 ~r~~L~~lL~~~gy~V~~a~~---~~---eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVIvlSa 98 (584)
+.+.+.+.+++.||.+..... .. ++++.+... .+|.||+....+. ..+.++.+. ...+|+|++..
T Consensus 17 ~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~--~vdgiii~~~~~~--~~~~~~~~~-~~~ipvV~~~~ 87 (266)
T cd06282 17 CVQGIQEEARAAGYSLLLATTDYDAEREADAVETLLRQ--RVDGLILTVADAA--TSPALDLLD-AERVPYVLAYN 87 (266)
T ss_pred HHHHHHHHHHHCCCEEEEeeCCCCHHHHHHHHHHHHhc--CCCEEEEecCCCC--chHHHHHHh-hCCCCEEEEec
Confidence 456677788888998876533 22 334444433 4899988543332 234555553 35789988854
No 362
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=25.41 E-value=2.2e+02 Score=29.90 Aligned_cols=83 Identities=16% Similarity=0.342 Sum_probs=56.6
Q ss_pred ECCHHHHHHHHHhcCCCceEEEEec---C-C----CCCCHHHHHHHHhccCCCCEEEEEcC-CChHHHHhhhhcCCceEE
Q 007940 47 CGLARDALSLLRERKDGYDIVISDV---N-M----PDMDGFKLLEHVGLEMDLPVIMMSVD-GETSRVMKGVQHGACDYL 117 (584)
Q Consensus 47 a~~~~eAL~~L~~~~~~pDLVIlDi---~-M----PdmdGlELL~~Ir~~~~iPVIvlSa~-~d~~~~~~aL~~GAdDYL 117 (584)
+++.++|.+..++. .+|.+-+.+ + + |.. ++++++.|+....+|+++.-+. ...+.+.++++.|++.+=
T Consensus 152 ~t~~eea~~f~~~t--gvD~Lavs~Gt~hg~~~~~~~l-~~e~L~~i~~~~~iPlv~hGgSGi~~e~i~~~i~~Gi~kiN 228 (282)
T TIGR01859 152 LADPDEAEQFVKET--GVDYLAAAIGTSHGKYKGEPGL-DFERLKEIKELTNIPLVLHGASGIPEEQIKKAIKLGIAKIN 228 (282)
T ss_pred cCCHHHHHHHHHHH--CcCEEeeccCccccccCCCCcc-CHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHcCCCEEE
Confidence 45788888888743 378877542 1 1 333 4899999977778999888633 455678889999998875
Q ss_pred eCCCCHHHHHHHHHHHHHh
Q 007940 118 LKPIRMKELRNIWQHVFRK 136 (584)
Q Consensus 118 ~KP~~~~eL~~aI~~vlrr 136 (584)
+- .+|+.++.+.++.
T Consensus 229 v~----T~l~~a~~~~~~~ 243 (282)
T TIGR01859 229 ID----TDCRIAFTAAIRK 243 (282)
T ss_pred EC----cHHHHHHHHHHHH
Confidence 53 3566655555543
No 363
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=25.39 E-value=1.8e+02 Score=28.01 Aligned_cols=71 Identities=18% Similarity=0.197 Sum_probs=38.2
Q ss_pred CHHHHHHHHHhcCCCceEEEEecCCC--CCCHHHHHHHHhcc-CCCCEEEEE--cCCChHHHHhhhhcCCceEEeCCC
Q 007940 49 LARDALSLLRERKDGYDIVISDVNMP--DMDGFKLLEHVGLE-MDLPVIMMS--VDGETSRVMKGVQHGACDYLLKPI 121 (584)
Q Consensus 49 ~~~eAL~~L~~~~~~pDLVIlDi~MP--dmdGlELL~~Ir~~-~~iPVIvlS--a~~d~~~~~~aL~~GAdDYL~KP~ 121 (584)
+.+++++.++.....++ .+.+.+| .-.|++.++.++.. +++|+++-. .......+..+.++||+-.+....
T Consensus 11 ~~~~~~~~~~~l~~~i~--~ieig~~~~~~~g~~~i~~i~~~~~~~~i~~~~~v~~~~~~~~~~~~~aGad~i~~h~~ 86 (202)
T cd04726 11 DLEEALELAKKVPDGVD--IIEAGTPLIKSEGMEAVRALREAFPDKIIVADLKTADAGALEAEMAFKAGADIVTVLGA 86 (202)
T ss_pred CHHHHHHHHHHhhhcCC--EEEcCCHHHHHhCHHHHHHHHHHCCCCEEEEEEEeccccHHHHHHHHhcCCCEEEEEee
Confidence 34455554444322223 3444333 23568888888654 577776532 222223356778889887766543
No 364
>PF10009 DUF2252: Uncharacterized protein conserved in bacteria (DUF2252); InterPro: IPR018721 This domain has no known function.
Probab=25.09 E-value=27 Score=38.39 Aligned_cols=21 Identities=24% Similarity=0.404 Sum_probs=18.9
Q ss_pred cccccccccccCcccccccCc
Q 007940 516 LDEDLQLCWLQGDCFAMNLGL 536 (584)
Q Consensus 516 ~~~d~~~~~~~g~~~~~n~gl 536 (584)
.+..-.-.|+.|||+.+|||.
T Consensus 37 ~~~~~~~v~icGD~Hl~NFG~ 57 (385)
T PF10009_consen 37 TPPSGPPVWICGDAHLENFGA 57 (385)
T ss_pred CCCCCCceEEeccchhhccCc
Confidence 677788899999999999996
No 365
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=25.09 E-value=8.6e+02 Score=26.65 Aligned_cols=66 Identities=20% Similarity=0.275 Sum_probs=43.1
Q ss_pred CHHHHHHHHHhcCCCceEEEEecCC-------CCCCHHHHHHHHhccCCCCEEEEEcCCChHHHHhhhhcCCceEEe
Q 007940 49 LARDALSLLRERKDGYDIVISDVNM-------PDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLL 118 (584)
Q Consensus 49 ~~~eAL~~L~~~~~~pDLVIlDi~M-------PdmdGlELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~ 118 (584)
+..+..+.+.+. .+|+|.++-.. +..+...+.+.++. .++|||. ..-...+.+.+++++||+..++
T Consensus 142 ~~~e~a~~l~ea--Gvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~-~~ipVIa-G~V~t~e~A~~l~~aGAD~V~V 214 (368)
T PRK08649 142 RAQELAPTVVEA--GVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYE-LDVPVIV-GGCVTYTTALHLMRTGAAGVLV 214 (368)
T ss_pred CHHHHHHHHHHC--CCCEEEEeccchhhhccCCcCCHHHHHHHHHH-CCCCEEE-eCCCCHHHHHHHHHcCCCEEEE
Confidence 345555666553 48999996532 22245555555553 5789876 4456677888899999998754
No 366
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=25.07 E-value=1.9e+02 Score=31.11 Aligned_cols=64 Identities=27% Similarity=0.433 Sum_probs=49.3
Q ss_pred CHHHHHHHHHh-cCCCceEEEEecCCCCCCHHHHHHHHhccCCCCEEEEEcCCChHHHHhhhhcCCce
Q 007940 49 LARDALSLLRE-RKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACD 115 (584)
Q Consensus 49 ~~~eAL~~L~~-~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdD 115 (584)
+..||+..+.. ..++.|+|++= |.+.=+++++.++....+|+...-..++..++..|.+.|..|
T Consensus 218 n~~eAlre~~~D~~EGAD~lMVK---Pal~YLDIi~~~k~~~~~PvaaYqVSGEYaMikaAa~~G~id 282 (314)
T cd00384 218 NRREALREVELDIEEGADILMVK---PALAYLDIIRDVRERFDLPVAAYNVSGEYAMIKAAAKNGWID 282 (314)
T ss_pred CHHHHHHHHHhhHHhCCCEEEEc---CCchHHHHHHHHHHhcCCCEEEEEccHHHHHHHHHHHcCCcc
Confidence 56777775543 33568999885 666667888999887899999998888888888888888654
No 367
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=25.02 E-value=7.9e+02 Score=25.51 Aligned_cols=75 Identities=20% Similarity=0.293 Sum_probs=45.8
Q ss_pred HHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCCEEEEEcCCChHHHHhhhhcCCceEEeCCCCH------
Q 007940 50 ARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRM------ 123 (584)
Q Consensus 50 ~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~------ 123 (584)
..+....+.. .|++++=-. .+.-|+-+++.+. ..+|||+ |..+. ..+.+..|..+++.++-+.
T Consensus 271 ~~~~~~~~~~----aDv~v~ps~-~e~~g~~~lEA~a--~G~PvI~-s~~~~---~~e~i~~~~~G~~~~~~~~~~~~~~ 339 (388)
T TIGR02149 271 KEELVELLSN----AEVFVCPSI-YEPLGIVNLEAMA--CGTPVVA-SATGG---IPEVVVDGETGFLVPPDNSDADGFQ 339 (388)
T ss_pred HHHHHHHHHh----CCEEEeCCc-cCCCChHHHHHHH--cCCCEEE-eCCCC---HHHHhhCCCceEEcCCCCCcccchH
Confidence 3444444443 467665322 2334566666553 5688875 43333 3455667888999999887
Q ss_pred HHHHHHHHHHHH
Q 007940 124 KELRNIWQHVFR 135 (584)
Q Consensus 124 ~eL~~aI~~vlr 135 (584)
++|.+++.+++.
T Consensus 340 ~~l~~~i~~l~~ 351 (388)
T TIGR02149 340 AELAKAINILLA 351 (388)
T ss_pred HHHHHHHHHHHh
Confidence 788888877764
No 368
>PF00497 SBP_bac_3: Bacterial extracellular solute-binding proteins, family 3; InterPro: IPR001638 Bacterial high affinity transport systems are involved in active transport of solutes across the cytoplasmic membrane. The protein components of these traffic systems include one or two transmembrane protein components, one or two membrane-associated ATP-binding proteins (ABC transporters; see IPR003439 from INTERPRO) and a high affinity periplasmic solute-binding protein. The latter are thought to bind the substrate in the vicinity of the inner membrane, and to transfer it to a complex of inner membrane proteins for concentration into the cytoplasm. In Gram-positive bacteria which are surrounded by a single membrane and have therefore no periplasmic region, the equivalent proteins are bound to the membrane via an N-terminal lipid anchor. These homologue proteins do not play an integral role in the transport process per se, but probably serve as receptors to trigger or initiate translocation of the solute throught the membrane by binding to external sites of the integral membrane proteins of the efflux system. In addition, at least some solute-binding proteins function in the initiation of sensory transduction pathways. On the basis of sequence similarities, the vast majority of these solute-binding proteins can be grouped [] into eight families or clusters, which generally correlate with the nature of the solute bound. Family 3 groups together specific amino acids and opine-binding periplasmic proteins and a periplasmic homologue with catalytic activity.; GO: 0005215 transporter activity, 0006810 transport, 0030288 outer membrane-bounded periplasmic space; PDB: 3N26_A 3QAX_A 3I6V_A 2VHA_B 2IA4_B 2Q89_A 2Q88_A 2YJP_C 1II5_A 1IIW_A ....
Probab=24.98 E-value=2.3e+02 Score=26.50 Aligned_cols=53 Identities=21% Similarity=0.265 Sum_probs=40.0
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEec
Q 007940 15 PAGLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDV 71 (584)
Q Consensus 15 p~gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi 71 (584)
..+.+|.++.... ..+.+...... +..+..+.+..++++++...+ +|+++.|.
T Consensus 108 l~~~~i~~~~g~~-~~~~l~~~~~~-~~~~~~~~~~~~~~~~l~~g~--~d~~i~~~ 160 (225)
T PF00497_consen 108 LKGKRIGVVRGSS-YADYLKQQYPS-NINIVEVDSPEEALEALLSGR--IDAFIVDE 160 (225)
T ss_dssp GTTSEEEEETTSH-HHHHHHHHTHH-TSEEEEESSHHHHHHHHHTTS--SSEEEEEH
T ss_pred hcCcccccccchh-HHHHhhhhccc-hhhhcccccHHHHHHHHhcCC--eeeeeccc
Confidence 3677999999865 44445555433 567778899999999998754 99999975
No 369
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=24.96 E-value=3.8e+02 Score=26.07 Aligned_cols=62 Identities=21% Similarity=0.177 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhCCCeEEEECCH------HHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCCEEEEE
Q 007940 29 WLKILEKMLKKCSYEVTTCGLA------RDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMS 97 (584)
Q Consensus 29 ~r~~L~~lL~~~gy~V~~a~~~------~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVIvlS 97 (584)
+...+++.++..||.+...... .++++.+... .+|.||+.-..+... +.+.+ ...+|+|++.
T Consensus 17 ~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~vdgiii~~~~~~~~---~~~~~--~~~ipvv~~~ 84 (267)
T cd06284 17 ILKGIEDEAREAGYGVLLGDTRSDPEREQEYLDLLRRK--QADGIILLDGSLPPT---ALTAL--AKLPPIVQAC 84 (267)
T ss_pred HHHHHHHHHHHcCCeEEEecCCCChHHHHHHHHHHHHc--CCCEEEEecCCCCHH---HHHHH--hcCCCEEEEe
Confidence 4567788888999988755532 2334444443 388877743222211 33333 2378999875
No 370
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=24.90 E-value=7.6e+02 Score=27.15 Aligned_cols=52 Identities=17% Similarity=0.218 Sum_probs=33.7
Q ss_pred HHHHHHHHhccCCCCEEEEEcCCChHHHHhhhhcC------CceEEeCCCCHHHHHHHHHHHHH
Q 007940 78 GFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHG------ACDYLLKPIRMKELRNIWQHVFR 135 (584)
Q Consensus 78 GlELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~G------AdDYL~KP~~~~eL~~aI~~vlr 135 (584)
|+-.++.+. ..+|+|+ +..+.. .+.+..| ..+|+..|.+.++|..++.+++.
T Consensus 379 gl~~lEAma--~G~pvI~-s~~gg~---~e~v~~~~~~~~~~~G~l~~~~d~~~la~~i~~~l~ 436 (473)
T TIGR02095 379 GLTQLYAMR--YGTVPIV-RRTGGL---ADTVVDGDPEAESGTGFLFEEYDPGALLAALSRALR 436 (473)
T ss_pred HHHHHHHHH--CCCCeEE-ccCCCc---cceEecCCCCCCCCceEEeCCCCHHHHHHHHHHHHH
Confidence 454555442 4567764 333322 2334444 78899999999999999988765
No 371
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=24.89 E-value=1.1e+02 Score=29.45 Aligned_cols=60 Identities=28% Similarity=0.339 Sum_probs=42.0
Q ss_pred CCCCCCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHH-HHHHHHhcCCCceEEEEecCCCCC
Q 007940 13 FNPAGLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARD-ALSLLRERKDGYDIVISDVNMPDM 76 (584)
Q Consensus 13 f~p~gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~e-AL~~L~~~~~~pDLVIlDi~MPdm 76 (584)
++..|.+|+||-.....-+-|..+|.+.+..|..+..-.. ..+.+++ .|+|+.-..-|++
T Consensus 32 ~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~~l~~~~~~----ADIVVsa~G~~~~ 92 (160)
T PF02882_consen 32 IDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTKNLQEITRR----ADIVVSAVGKPNL 92 (160)
T ss_dssp -STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSSSHHHHHTT----SSEEEE-SSSTT-
T ss_pred CCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCCcccceeee----ccEEeeeeccccc
Confidence 3467889999999999999999999999999987765533 3333332 6999999877764
No 372
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=24.89 E-value=4.3e+02 Score=31.97 Aligned_cols=101 Identities=12% Similarity=0.044 Sum_probs=58.6
Q ss_pred CEEEEEeCCHH---HHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecC--CCCC-CHHHHHHHHh-cc-C
Q 007940 18 LRVLVVDDDLA---WLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVN--MPDM-DGFKLLEHVG-LE-M 89 (584)
Q Consensus 18 mrVLIVDDd~~---~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~--MPdm-dGlELL~~Ir-~~-~ 89 (584)
.+|.+|+-|.. ..+.++.+-+..|..+..+.+..+..+.+.... .+|+||+|.- ++.. .-.+.++.+. .. +
T Consensus 216 kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~-~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p 294 (767)
T PRK14723 216 DQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALG-DKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRP 294 (767)
T ss_pred CeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhc-CCCEEEEeCCCCCccCHHHHHHHHHHhccCCC
Confidence 58888887764 335566666677766666678877777776643 4799999972 2211 1234444442 12 3
Q ss_pred CCCEEEEEcCCChHH---HHhhhhc----CCceEE-eC
Q 007940 90 DLPVIMMSVDGETSR---VMKGVQH----GACDYL-LK 119 (584)
Q Consensus 90 ~iPVIvlSa~~d~~~---~~~aL~~----GAdDYL-~K 119 (584)
.-.++++++....+. +.+.++. +.+.+| +|
T Consensus 295 ~e~~LVLsAt~~~~~l~~i~~~f~~~~~~~i~glIlTK 332 (767)
T PRK14723 295 VRRLLLLNAASHGDTLNEVVHAYRHGAGEDVDGCIITK 332 (767)
T ss_pred CeEEEEECCCCcHHHHHHHHHHHhhcccCCCCEEEEec
Confidence 334566666544333 3455543 566765 44
No 373
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=24.87 E-value=5.3e+02 Score=27.95 Aligned_cols=88 Identities=6% Similarity=0.000 Sum_probs=52.5
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCC-eEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCH--HHHHHHHhccCCCC
Q 007940 17 GLRVLVVDDDLAWLKILEKMLKKCSY-EVT-TCGLARDALSLLRERKDGYDIVISDVNMPDMDG--FKLLEHVGLEMDLP 92 (584)
Q Consensus 17 gmrVLIVDDd~~~r~~L~~lL~~~gy-~V~-~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdG--lELL~~Ir~~~~iP 92 (584)
+.+|+-||=++...+..+.-++..+. .+. .+.+..+.+... ...+|+|++|- | -.| -++++.|.....--
T Consensus 255 ~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~---~~~~D~vi~DP--P-r~G~~~~~l~~l~~~~p~~ 328 (374)
T TIGR02085 255 DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQ---MSAPELVLVNP--P-RRGIGKELCDYLSQMAPKF 328 (374)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhc---CCCCCEEEECC--C-CCCCcHHHHHHHHhcCCCe
Confidence 46899999999999999988887764 232 455555544321 12389999994 3 334 35666664322223
Q ss_pred EEEEEcCCChHHHHhhhhc
Q 007940 93 VIMMSVDGETSRVMKGVQH 111 (584)
Q Consensus 93 VIvlSa~~d~~~~~~aL~~ 111 (584)
+|.++ ......++++..+
T Consensus 329 ivyvs-c~p~TlaRDl~~L 346 (374)
T TIGR02085 329 ILYSS-CNAQTMAKDIAEL 346 (374)
T ss_pred EEEEE-eCHHHHHHHHHHh
Confidence 55554 3333444444444
No 374
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=24.80 E-value=3.4e+02 Score=28.64 Aligned_cols=54 Identities=28% Similarity=0.437 Sum_probs=38.3
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCC---C--eEE-EECCHHHHHHHHHhcCCCceEEEEecCCCC
Q 007940 19 RVLVVDDDLAWLKILEKMLKKCS---Y--EVT-TCGLARDALSLLRERKDGYDIVISDVNMPD 75 (584)
Q Consensus 19 rVLIVDDd~~~r~~L~~lL~~~g---y--~V~-~a~~~~eAL~~L~~~~~~pDLVIlDi~MPd 75 (584)
+|.+||=|+.+.+.-++.|-... + +|. ..+ +|.+.+++....+|+||+|..-|.
T Consensus 102 ~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~---Dg~~~v~~~~~~fDvIi~D~tdp~ 161 (282)
T COG0421 102 RITMVEIDPAVIELARKYLPEPSGGADDPRVEIIID---DGVEFLRDCEEKFDVIIVDSTDPV 161 (282)
T ss_pred eEEEEEcCHHHHHHHHHhccCcccccCCCceEEEec---cHHHHHHhCCCcCCEEEEcCCCCC
Confidence 78889999999988888886543 1 222 333 555666654446999999998883
No 375
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=24.79 E-value=4.9e+02 Score=27.36 Aligned_cols=92 Identities=13% Similarity=0.042 Sum_probs=56.9
Q ss_pred EEEEEeCCHHHHHHHHHHH----HhCC--C-eEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCC
Q 007940 19 RVLVVDDDLAWLKILEKML----KKCS--Y-EVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDL 91 (584)
Q Consensus 19 rVLIVDDd~~~r~~L~~lL----~~~g--y-~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~i 91 (584)
.|||-|.|-.+.-.+...+ +..+ . .-+.+.+.+++.+++.. .+|.|.+|- =|.+.++++......
T Consensus 160 ~vlikdnHi~~~g~~~~~v~~aR~~~~~~~~Igvsv~tleea~~A~~~---gaDyI~lD~-----~~~e~l~~~~~~~~~ 231 (277)
T PRK08072 160 GVMIKDNHIAFCGSITKAVTSVREKLGHMVKIEVETETEEQVREAVAA---GADIIMFDN-----RTPDEIREFVKLVPS 231 (277)
T ss_pred eEEEchhHHHhhCCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHc---CCCEEEECC-----CCHHHHHHHHHhcCC
Confidence 5777777755543333333 3344 2 23477888998888753 489999973 345666665432222
Q ss_pred CE-EEEEcCCChHHHHhhhhcCCceEEe
Q 007940 92 PV-IMMSVDGETSRVMKGVQHGACDYLL 118 (584)
Q Consensus 92 PV-IvlSa~~d~~~~~~aL~~GAdDYL~ 118 (584)
|+ |..++--..+.+.+..+.||+.+-+
T Consensus 232 ~i~i~AiGGIt~~ni~~~a~~Gvd~IAv 259 (277)
T PRK08072 232 AIVTEASGGITLENLPAYGGTGVDYISL 259 (277)
T ss_pred CceEEEECCCCHHHHHHHHHcCCCEEEE
Confidence 33 3345566778888999999887643
No 376
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=24.72 E-value=2.3e+02 Score=31.98 Aligned_cols=64 Identities=14% Similarity=0.159 Sum_probs=44.8
Q ss_pred HHHHHHHHhcCCCceEEEEecCCCC-CCHHHHHHHHhcc-CCCCEEEEEcCCChHHHHhhhhcCCceEE
Q 007940 51 RDALSLLRERKDGYDIVISDVNMPD-MDGFKLLEHVGLE-MDLPVIMMSVDGETSRVMKGVQHGACDYL 117 (584)
Q Consensus 51 ~eAL~~L~~~~~~pDLVIlDi~MPd-mdGlELL~~Ir~~-~~iPVIvlSa~~d~~~~~~aL~~GAdDYL 117 (584)
.++.+.+.+. .+|+|++|..-.. ..-++.++.|+.. +++|||+ -.-...+.+..+.++||+...
T Consensus 230 ~e~a~~L~~a--gvdvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~-g~v~t~e~a~~l~~aGad~i~ 295 (486)
T PRK05567 230 EERAEALVEA--GVDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIA-GNVATAEAARALIEAGADAVK 295 (486)
T ss_pred HHHHHHHHHh--CCCEEEEECCCCcchhHHHHHHHHHhhCCCCCEEE-eccCCHHHHHHHHHcCCCEEE
Confidence 4555555553 3899999975332 3456778888765 4788876 555677888999999998764
No 377
>cd06354 PBP1_BmpA_PnrA_like Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. The PnrA lipoprotein, also known as Tp0319 or TmpC, represents a novel family of bacterial purine nucleoside receptor encoded within an ATP-binding cassette (ABC) transport system (pnrABCDE). It shows a striking structural similarity to another basic membrane lipoprotein Med which regulates the competence transcription factor gene, comK, in Bacillus subtilis. The members of PnrA-like subgroup are likely to have similar nucleoside-binding functions and a similar type I periplasmic sugar-binding protein-like fold.
Probab=24.64 E-value=3.7e+02 Score=26.83 Aligned_cols=65 Identities=18% Similarity=0.124 Sum_probs=36.8
Q ss_pred HHHHHHHHHHhCCCeEEEECC--H---HHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCCEEEEEc
Q 007940 29 WLKILEKMLKKCSYEVTTCGL--A---RDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSV 98 (584)
Q Consensus 29 ~r~~L~~lL~~~gy~V~~a~~--~---~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVIvlSa 98 (584)
+...+++.+++.||.+..+.. . .+.++.+... .+|.||+-- +.++ -...+.++....+|+|++..
T Consensus 20 ~~~gi~~~~~~~gy~~~i~~~~~~~~~~~~i~~l~~~--~vdgiI~~~--~~~~-~~~~~~~~~~~~~PiV~i~~ 89 (265)
T cd06354 20 AWEGLERAAKELGIEYKYVESKSDADYEPNLEQLADA--GYDLIVGVG--FLLA-DALKEVAKQYPDQKFAIIDA 89 (265)
T ss_pred HHHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHhC--CCCEEEEcC--cchH-HHHHHHHHHCCCCEEEEEec
Confidence 445677888889998876532 2 2334444443 388888732 1222 23333344334789888753
No 378
>PLN00191 enolase
Probab=24.50 E-value=4.9e+02 Score=29.42 Aligned_cols=106 Identities=21% Similarity=0.341 Sum_probs=68.7
Q ss_pred EeCCHHHHHHHHHHHHhCCCe--EEE-----------------------------ECCHHHHHHHHHhcCCCceEEEEec
Q 007940 23 VDDDLAWLKILEKMLKKCSYE--VTT-----------------------------CGLARDALSLLRERKDGYDIVISDV 71 (584)
Q Consensus 23 VDDd~~~r~~L~~lL~~~gy~--V~~-----------------------------a~~~~eAL~~L~~~~~~pDLVIlDi 71 (584)
++++....+.|.+.++..||+ |.. .-+..++++.++.....++++.+.-
T Consensus 239 ~~~~~eal~ll~eAi~~ag~~~~i~i~lD~Aase~~~~~~~Y~~~~~~~~~~~~~~~s~~e~i~~~~~L~~~y~I~~IED 318 (457)
T PLN00191 239 IQDNKEGLELLKEAIEKAGYTGKIKIGMDVAASEFYTKDKKYDLDFKEENNDGSNKKSGDELIDLYKEFVSDYPIVSIED 318 (457)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCceEEEeehhhhhhcccCCceEeeccccCCCcccccCHHHHHHHHHHHhhcCCcEEEEC
Confidence 567888888999999877664 110 0267778887776444577777765
Q ss_pred CCCCCCHHHHHHHHhccCCCCEEEEEcC---CChHHHHhhhhcCCce-EEeCCCCHHHHHHHHH
Q 007940 72 NMPDMDGFKLLEHVGLEMDLPVIMMSVD---GETSRVMKGVQHGACD-YLLKPIRMKELRNIWQ 131 (584)
Q Consensus 72 ~MPdmdGlELL~~Ir~~~~iPVIvlSa~---~d~~~~~~aL~~GAdD-YL~KP~~~~eL~~aI~ 131 (584)
-++. +.++-.++++....+||+. .. .....+.++++.|+.+ +++|+-...-|..+++
T Consensus 319 Pl~~-~D~eg~~~Lt~~~~ipIvg--DE~~vtn~~~l~~~I~~~aad~i~iKl~qiGGITea~~ 379 (457)
T PLN00191 319 PFDQ-DDWEHWAKLTSLEDVQIVG--DDLLVTNPKRVAKAIQEKACNALLLKVNQIGTVTESIE 379 (457)
T ss_pred CCCc-ccHHHHHHHHccCCCcEEc--cCcccCCHHHHHHHHHhCCCCEEEecccccCCHHHHHH
Confidence 5544 3355566676556666543 22 4467788999988876 5788876555544443
No 379
>cd08174 G1PDH-like Glycerol-1-phosphate dehydrogenase-like. Glycerol-1-phosphate dehydrogenase-like. The proteins of this family have not been characterized. The protein sequences have high similarity with that of glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. This family is bacteria specific.
Probab=24.41 E-value=3.9e+02 Score=28.31 Aligned_cols=76 Identities=17% Similarity=0.104 Sum_probs=49.6
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhCCC-eEEEE-----CCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCC
Q 007940 18 LRVLVVDDDLAWLKILEKMLKKCSY-EVTTC-----GLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDL 91 (584)
Q Consensus 18 mrVLIVDDd~~~r~~L~~lL~~~gy-~V~~a-----~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~i 91 (584)
-|++||-|... .+.+.+.|+..+. .+..+ .+.+++.+.+.... .+|+||- .-+..-+++.+.+.....+
T Consensus 26 ~r~livtd~~~-~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~d~iIa---iGGGsv~D~aK~vA~~~~~ 100 (331)
T cd08174 26 GRVAVVSGPGV-GEQVAESLKTSFSAEVEAVEEVSNSDAEEIGARARSIP-NVDAVVG---IGGGKVIDVAKYAAFLRGI 100 (331)
T ss_pred CceEEEECCcH-HHHHHHHHHhccCceEEEecCCCccCHHHHHHHHHhcc-CCCEEEE---eCCcHHHHHHHHHHhhcCC
Confidence 58999988765 5667777766554 33332 24456666666543 4788773 4566667788777656678
Q ss_pred CEEEEEc
Q 007940 92 PVIMMSV 98 (584)
Q Consensus 92 PVIvlSa 98 (584)
|+|.+..
T Consensus 101 p~i~vPT 107 (331)
T cd08174 101 PLSVPTT 107 (331)
T ss_pred CEEEecC
Confidence 8887743
No 380
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=24.27 E-value=6.9e+02 Score=27.34 Aligned_cols=101 Identities=21% Similarity=0.303 Sum_probs=62.1
Q ss_pred CCCEEEEEe----CCHHHHHHHHHHHHhCC-CeEE--EECCHHHHHHHHHhcCCCceEEEEecC--------------CC
Q 007940 16 AGLRVLVVD----DDLAWLKILEKMLKKCS-YEVT--TCGLARDALSLLRERKDGYDIVISDVN--------------MP 74 (584)
Q Consensus 16 ~gmrVLIVD----Dd~~~r~~L~~lL~~~g-y~V~--~a~~~~eAL~~L~~~~~~pDLVIlDi~--------------MP 74 (584)
++..+++|| ......+.++.+-+..+ ..|+ -+.+.+.|..++.. ..|.|.+-+. .|
T Consensus 119 agvD~ivID~a~g~s~~~~~~ik~ik~~~~~~~viaGNV~T~e~a~~L~~a---Gad~vkVGiGpGsiCtTr~v~GvG~P 195 (352)
T PF00478_consen 119 AGVDVIVIDSAHGHSEHVIDMIKKIKKKFPDVPVIAGNVVTYEGAKDLIDA---GADAVKVGIGPGSICTTREVTGVGVP 195 (352)
T ss_dssp TT-SEEEEE-SSTTSHHHHHHHHHHHHHSTTSEEEEEEE-SHHHHHHHHHT---T-SEEEESSSSSTTBHHHHHHSBSCT
T ss_pred cCCCEEEccccCccHHHHHHHHHHHHHhCCCceEEecccCCHHHHHHHHHc---CCCEEEEeccCCcccccccccccCCc
Confidence 466788888 34555566666656665 3333 34567777777663 3799998864 22
Q ss_pred CCCHHHHHHHHhccCCCCEEEEEcCCChHHHHhhhhcCCceEEeC
Q 007940 75 DMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLK 119 (584)
Q Consensus 75 dmdGlELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~K 119 (584)
....+--+...+....+|||.=-.-.....+.+||.+||+....=
T Consensus 196 Q~tAv~~~a~~a~~~~v~iIADGGi~~sGDi~KAla~GAd~VMlG 240 (352)
T PF00478_consen 196 QLTAVYECAEAARDYGVPIIADGGIRTSGDIVKALAAGADAVMLG 240 (352)
T ss_dssp HHHHHHHHHHHHHCTTSEEEEESS-SSHHHHHHHHHTT-SEEEES
T ss_pred HHHHHHHHHHHhhhccCceeecCCcCcccceeeeeeecccceeec
Confidence 222222233333445789987666678899999999999987664
No 381
>PRK13695 putative NTPase; Provisional
Probab=24.25 E-value=4.7e+02 Score=24.55 Aligned_cols=72 Identities=21% Similarity=0.220 Sum_probs=39.6
Q ss_pred CCceEEEEec--CCCCCCH--HHHHHHHhccCCCCEEEEEcCCChHHHHhhhhc--CCceEEeCCCCHHHHHHHHHHHH
Q 007940 62 DGYDIVISDV--NMPDMDG--FKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQH--GACDYLLKPIRMKELRNIWQHVF 134 (584)
Q Consensus 62 ~~pDLVIlDi--~MPdmdG--lELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~--GAdDYL~KP~~~~eL~~aI~~vl 134 (584)
..++++|+|- .+...+. .++++.+. ....|+|+++-........+.+.. +..=|-..|-+.++|.+.+...+
T Consensus 95 ~~~~~lllDE~~~~e~~~~~~~~~l~~~~-~~~~~~i~v~h~~~~~~~~~~i~~~~~~~i~~~~~~~r~~~~~~~~~~~ 172 (174)
T PRK13695 95 EEADVIIIDEIGKMELKSPKFVKAVEEVL-DSEKPVIATLHRRSVHPFVQEIKSRPGGRVYELTPENRDSLPFEILNRL 172 (174)
T ss_pred CCCCEEEEECCCcchhhhHHHHHHHHHHH-hCCCeEEEEECchhhHHHHHHHhccCCcEEEEEcchhhhhHHHHHHHHH
Confidence 3589999996 2222221 33344433 356788887765433332232322 22235567888888887776543
No 382
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=24.23 E-value=4.2e+02 Score=26.96 Aligned_cols=100 Identities=11% Similarity=0.072 Sum_probs=61.7
Q ss_pred CCCE-EEEEeCCHHHHHHHHHHHHhCCCeEEE--E-CCHHHHHHHHHhcCCCceEEE-EecCCCC--------CCHHHHH
Q 007940 16 AGLR-VLVVDDDLAWLKILEKMLKKCSYEVTT--C-GLARDALSLLRERKDGYDIVI-SDVNMPD--------MDGFKLL 82 (584)
Q Consensus 16 ~gmr-VLIVDDd~~~r~~L~~lL~~~gy~V~~--a-~~~~eAL~~L~~~~~~pDLVI-lDi~MPd--------mdGlELL 82 (584)
.|.. |++.|-+......+.+.+++.|..... . .+..+.++.+.... .+.|+ +-+ +|. .+..+.+
T Consensus 103 aG~~giiipDl~~ee~~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~~~--~~~vy~~s~-~g~tG~~~~~~~~~~~~i 179 (242)
T cd04724 103 AGVDGLIIPDLPPEEAEEFREAAKEYGLDLIFLVAPTTPDERIKKIAELA--SGFIYYVSR-TGVTGARTELPDDLKELI 179 (242)
T ss_pred CCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhhC--CCCEEEEeC-CCCCCCccCCChhHHHHH
Confidence 3444 445555666666777777888865442 2 23345555555422 23333 222 332 1245677
Q ss_pred HHHhccCCCCEEEEEcCCChHHHHhhhhcCCceEEeC
Q 007940 83 EHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLK 119 (584)
Q Consensus 83 ~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~K 119 (584)
++++...++||++=.+-...+.+.++.++ |+.+++-
T Consensus 180 ~~lr~~~~~pI~vggGI~~~e~~~~~~~~-ADgvVvG 215 (242)
T cd04724 180 KRIRKYTDLPIAVGFGISTPEQAAEVAKY-ADGVIVG 215 (242)
T ss_pred HHHHhcCCCcEEEEccCCCHHHHHHHHcc-CCEEEEC
Confidence 77876678899886666767788888888 9999986
No 383
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=24.01 E-value=4.4e+02 Score=25.71 Aligned_cols=63 Identities=16% Similarity=0.121 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhCCCeEEEECC---HH---HHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCCEEEEE
Q 007940 29 WLKILEKMLKKCSYEVTTCGL---AR---DALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMS 97 (584)
Q Consensus 29 ~r~~L~~lL~~~gy~V~~a~~---~~---eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVIvlS 97 (584)
+...+.+.+++.||.+....+ .. +.++.+... .+|.||+--.+. + -.+++.++ ...+|+|++-
T Consensus 17 ~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~--~vdgiii~~~~~--~-~~~~~~l~-~~~iPvv~~~ 85 (268)
T cd06273 17 VIQAFQETLAAHGYTLLVASSGYDLDREYAQARKLLER--GVDGLALIGLDH--S-PALLDLLA-RRGVPYVATW 85 (268)
T ss_pred HHHHHHHHHHHCCCEEEEecCCCCHHHHHHHHHHHHhc--CCCEEEEeCCCC--C-HHHHHHHH-hCCCCEEEEc
Confidence 345677778889998876543 22 334444443 378777622211 1 24444443 3578998874
No 384
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=23.93 E-value=4.5e+02 Score=25.87 Aligned_cols=66 Identities=17% Similarity=0.276 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHhCCCeEEEECC---H---HHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCCEEEEEc
Q 007940 28 AWLKILEKMLKKCSYEVTTCGL---A---RDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSV 98 (584)
Q Consensus 28 ~~r~~L~~lL~~~gy~V~~a~~---~---~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVIvlSa 98 (584)
.+...+++.+++.||.+....+ . ..+++.+... .+|-||+--.. .+.-.+++.++. ..+|||++-.
T Consensus 16 ~~~~~i~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~--~vdgii~~~~~--~~~~~~~~~~~~-~~ipvV~i~~ 87 (269)
T cd06281 16 QLFSGAEDRLRAAGYSLLIANSLNDPERELEILRSFEQR--RMDGIIIAPGD--ERDPELVDALAS-LDLPIVLLDR 87 (269)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHHc--CCCEEEEecCC--CCcHHHHHHHHh-CCCCEEEEec
Confidence 3456778888899999875432 2 2444445443 38888874322 222344555543 4689998854
No 385
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=23.91 E-value=6e+02 Score=26.75 Aligned_cols=95 Identities=15% Similarity=0.137 Sum_probs=57.8
Q ss_pred EEeCCHHHHHHHHHHHHhCCCeEEEE------CC---HHHHHHHHHhcCCCceEEEEecCCC--CCC---HHHHHHHHhc
Q 007940 22 VVDDDLAWLKILEKMLKKCSYEVTTC------GL---ARDALSLLRERKDGYDIVISDVNMP--DMD---GFKLLEHVGL 87 (584)
Q Consensus 22 IVDDd~~~r~~L~~lL~~~gy~V~~a------~~---~~eAL~~L~~~~~~pDLVIlDi~MP--dmd---GlELL~~Ir~ 87 (584)
+..+-....++++.+-+..++.|.+- .. ..+....+.+. +.|.|.+.-..+ +.. -++.++.++.
T Consensus 112 l~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~~~~~~~~~~a~~l~~~--G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~ 189 (319)
T TIGR00737 112 LLRDPDLIGKIVKAVVDAVDIPVTVKIRIGWDDAHINAVEAARIAEDA--GAQAVTLHGRTRAQGYSGEANWDIIARVKQ 189 (319)
T ss_pred HhCCHHHHHHHHHHHHhhcCCCEEEEEEcccCCCcchHHHHHHHHHHh--CCCEEEEEcccccccCCCchhHHHHHHHHH
Confidence 44555666677777666555443321 11 23334444443 377777643322 111 3677778876
Q ss_pred cCCCCEEEEEcCCChHHHHhhh-hcCCceEEe
Q 007940 88 EMDLPVIMMSVDGETSRVMKGV-QHGACDYLL 118 (584)
Q Consensus 88 ~~~iPVIvlSa~~d~~~~~~aL-~~GAdDYL~ 118 (584)
..++|||....-.+.+.+.+++ ..||+...+
T Consensus 190 ~~~ipvi~nGgI~~~~da~~~l~~~gad~Vmi 221 (319)
T TIGR00737 190 AVRIPVIGNGDIFSPEDAKAMLETTGCDGVMI 221 (319)
T ss_pred cCCCcEEEeCCCCCHHHHHHHHHhhCCCEEEE
Confidence 6779999888888889999999 567776643
No 386
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=23.91 E-value=7.1e+02 Score=28.67 Aligned_cols=101 Identities=15% Similarity=0.225 Sum_probs=56.6
Q ss_pred CEEEEE--eCCHHHHHH---HHHHHH-hCCCeEEEECCHHHHHH----------------HHHhcCCCceEEEEecCCCC
Q 007940 18 LRVLVV--DDDLAWLKI---LEKMLK-KCSYEVTTCGLARDALS----------------LLRERKDGYDIVISDVNMPD 75 (584)
Q Consensus 18 mrVLIV--DDd~~~r~~---L~~lL~-~~gy~V~~a~~~~eAL~----------------~L~~~~~~pDLVIlDi~MPd 75 (584)
-+|+|| -+.+...+. |..+|+ ..|+.|.........+. .+......+|+||+ -|
T Consensus 195 ~~VgIV~n~~k~~a~el~~~I~~~L~~~~gi~V~ve~~~a~~l~~~~~~~~~~~~~~~~~~~~~l~~~~DlVIs----iG 270 (508)
T PLN02935 195 QTVLIITKPNSTSVRVLCAEMVRWLREQKGLNIYVEPRVKKELLSESSYFNFVQTWEDEKEILLLHTKVDLVIT----LG 270 (508)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHhcCCCEEEEechhhhhhccccccccccccccccchhhhcccCCCEEEE----EC
Confidence 467887 344444444 445555 46777765432222110 00001113666665 36
Q ss_pred CCHHHHHHHHh--ccCCCCEEEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHhc
Q 007940 76 MDGFKLLEHVG--LEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 137 (584)
Q Consensus 76 mdGlELL~~Ir--~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrrk 137 (584)
.||- +|+..+ ....+||+-+ ..|=.+||+ ++..+++..++.++++..
T Consensus 271 GDGT-lL~Aar~~~~~~iPILGI-------------N~G~LGFLt-~i~~~e~~~~Le~il~G~ 319 (508)
T PLN02935 271 GDGT-VLWAASMFKGPVPPVVPF-------------SMGSLGFMT-PFHSEQYRDCLDAILKGP 319 (508)
T ss_pred CcHH-HHHHHHHhccCCCcEEEE-------------eCCCcceec-ccCHHHHHHHHHHHHcCC
Confidence 7874 333332 2346787744 456777874 789999999999988654
No 387
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=23.90 E-value=2.6e+02 Score=30.81 Aligned_cols=54 Identities=19% Similarity=0.246 Sum_probs=40.1
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhCCCe---E-EEECCHHHHHHHHHhcCCCceEEEEec
Q 007940 18 LRVLVVDDDLAWLKILEKMLKKCSYE---V-TTCGLARDALSLLRERKDGYDIVISDV 71 (584)
Q Consensus 18 mrVLIVDDd~~~r~~L~~lL~~~gy~---V-~~a~~~~eAL~~L~~~~~~pDLVIlDi 71 (584)
-+|.-||-++...+..++-++..+.. + ...++..+.+..+......||+||+|-
T Consensus 244 ~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVilDP 301 (396)
T PRK15128 244 SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDP 301 (396)
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEECC
Confidence 48999999999999999999877652 3 345677776655543233599999984
No 388
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=23.87 E-value=7.1e+02 Score=24.56 Aligned_cols=53 Identities=23% Similarity=0.347 Sum_probs=35.6
Q ss_pred HHHHHHHHhccCCCCEEEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 007940 78 GFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 136 (584)
Q Consensus 78 GlELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrr 136 (584)
|..+++.+. ..+|||+ +..+. ..+.+..+..+++.++.+.+++.+++.+++..
T Consensus 292 ~~~~~Ea~~--~G~pvI~-~~~~~---~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~ 344 (377)
T cd03798 292 GLVLLEAMA--CGLPVVA-TDVGG---IPEIITDGENGLLVPPGDPEALAEAILRLLAD 344 (377)
T ss_pred ChHHHHHHh--cCCCEEE-ecCCC---hHHHhcCCcceeEECCCCHHHHHHHHHHHhcC
Confidence 344444442 4678874 33333 23456667778999999999999999888754
No 389
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=23.86 E-value=3.3e+02 Score=29.85 Aligned_cols=99 Identities=22% Similarity=0.289 Sum_probs=61.6
Q ss_pred CCCEEEEEeC---------CHHHHHHHHHHHHhCCCeEEE--ECCHHHHHHHHHhcCCCceEEEEecCCCC-------CC
Q 007940 16 AGLRVLVVDD---------DLAWLKILEKMLKKCSYEVTT--CGLARDALSLLRERKDGYDIVISDVNMPD-------MD 77 (584)
Q Consensus 16 ~gmrVLIVDD---------d~~~r~~L~~lL~~~gy~V~~--a~~~~eAL~~L~~~~~~pDLVIlDi~MPd-------md 77 (584)
+|..+++++- .......+.+.+++.+..|+. +.+.+.|.++++ ...|.|++... |+ ..
T Consensus 153 aGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~~ipVIaG~V~t~e~A~~l~~---aGAD~V~VG~G-~Gs~~~t~~~~ 228 (368)
T PRK08649 153 AGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYELDVPVIVGGCVTYTTALHLMR---TGAAGVLVGIG-PGAACTSRGVL 228 (368)
T ss_pred CCCCEEEEeccchhhhccCCcCCHHHHHHHHHHCCCCEEEeCCCCHHHHHHHHH---cCCCEEEECCC-CCcCCCCcccC
Confidence 3567788742 011234466677766655553 567788888775 24899987642 32 11
Q ss_pred --HHHHH---HHHhc--------c--CCCCEEEEEcCCChHHHHhhhhcCCceEEe
Q 007940 78 --GFKLL---EHVGL--------E--MDLPVIMMSVDGETSRVMKGVQHGACDYLL 118 (584)
Q Consensus 78 --GlELL---~~Ir~--------~--~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~ 118 (584)
|+..+ ..... . ..+|||.--.-.....+.+|+.+||+....
T Consensus 229 g~g~p~~~ai~~~~~a~~~~l~~~~~~~vpVIAdGGI~~~~diakAlalGAd~Vm~ 284 (368)
T PRK08649 229 GIGVPMATAIADVAAARRDYLDETGGRYVHVIADGGIGTSGDIAKAIACGADAVML 284 (368)
T ss_pred CCCcCHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCHHHHHHHHHcCCCeecc
Confidence 22222 22110 0 258999888888889999999999998764
No 390
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=23.66 E-value=5.4e+02 Score=25.16 Aligned_cols=89 Identities=9% Similarity=0.056 Sum_probs=52.9
Q ss_pred HHHHHhCC-CeEEEECCHHHHHHHHHhc-CCCceEEEEecCCCCCCHHHHHHHHhccCCCCEE-EEEcCCChHHHHhhhh
Q 007940 34 EKMLKKCS-YEVTTCGLARDALSLLRER-KDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVI-MMSVDGETSRVMKGVQ 110 (584)
Q Consensus 34 ~~lL~~~g-y~V~~a~~~~eAL~~L~~~-~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVI-vlSa~~d~~~~~~aL~ 110 (584)
.+.|...+ .-|....+.+++++.++.. +.+ +=++-+.+...+..++++.++.....-.+ .-|- -..+.+..|++
T Consensus 6 ~~~l~~~~~~~v~r~~~~~~~~~~~~~~~~~G--v~~vqlr~k~~~~~e~~~~~~~~~~~~~~g~gtv-l~~d~~~~A~~ 82 (187)
T PRK07455 6 LAQLQQHRAIAVIRAPDLELGLQMAEAVAAGG--MRLIEITWNSDQPAELISQLREKLPECIIGTGTI-LTLEDLEEAIA 82 (187)
T ss_pred HHHHHhCCEEEEEEcCCHHHHHHHHHHHHHCC--CCEEEEeCCCCCHHHHHHHHHHhCCCcEEeEEEE-EcHHHHHHHHH
Confidence 34445555 4456677888888876652 223 44667777888888988887543322111 1111 12266778899
Q ss_pred cCCceEEeCCCCHHH
Q 007940 111 HGACDYLLKPIRMKE 125 (584)
Q Consensus 111 ~GAdDYL~KP~~~~e 125 (584)
+||+..+.--+..+.
T Consensus 83 ~gAdgv~~p~~~~~~ 97 (187)
T PRK07455 83 AGAQFCFTPHVDPEL 97 (187)
T ss_pred cCCCEEECCCCCHHH
Confidence 999876665555443
No 391
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=23.65 E-value=2.2e+02 Score=34.67 Aligned_cols=72 Identities=21% Similarity=0.346 Sum_probs=47.8
Q ss_pred CceEEEEe-cCCCCCCHHHHHHH-HhccC-CCCEEEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 007940 63 GYDIVISD-VNMPDMDGFKLLEH-VGLEM-DLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 136 (584)
Q Consensus 63 ~pDLVIlD-i~MPdmdGlELL~~-Ir~~~-~iPVIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrr 136 (584)
.+-|+|+| ++|-...++..|.+ |.+.+ .+-+|++| .+.+.+...++.-..-|-.+++..++|...+.+++.+
T Consensus 120 ~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~t--t~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~ 194 (824)
T PRK07764 120 RYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFAT--TEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQ 194 (824)
T ss_pred CceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEe--CChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHH
Confidence 47788887 56655566655444 44332 44455555 3445566777766677888899999999888887654
No 392
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=23.63 E-value=2.7e+02 Score=28.01 Aligned_cols=69 Identities=16% Similarity=0.238 Sum_probs=49.4
Q ss_pred CHHHHHHHHHhcCCCceEEEEecCCCCC-CH--HHHHHHHhccCCCCEEEEEcCCChHHHHhhhhcCCceEEe
Q 007940 49 LARDALSLLRERKDGYDIVISDVNMPDM-DG--FKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLL 118 (584)
Q Consensus 49 ~~~eAL~~L~~~~~~pDLVIlDi~MPdm-dG--lELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~ 118 (584)
+..+.++.+.+.. .-.+|++|+.--++ .| ++++++++....+|+|.--+-.+.+.+.++.+.|+++.++
T Consensus 148 ~~~~~~~~~~~~g-~~~ii~tdi~~dGt~~G~d~~~~~~l~~~~~~~viasGGv~~~~Dl~~l~~~G~~gviv 219 (229)
T PF00977_consen 148 DLEEFAKRLEELG-AGEIILTDIDRDGTMQGPDLELLKQLAEAVNIPVIASGGVRSLEDLRELKKAGIDGVIV 219 (229)
T ss_dssp EHHHHHHHHHHTT--SEEEEEETTTTTTSSS--HHHHHHHHHHHSSEEEEESS--SHHHHHHHHHTTECEEEE
T ss_pred CHHHHHHHHHhcC-CcEEEEeeccccCCcCCCCHHHHHHHHHHcCCCEEEecCCCCHHHHHHHHHCCCcEEEE
Confidence 3566676666542 24699999975542 33 6778888666689999877778889999999999988875
No 393
>PRK10060 RNase II stability modulator; Provisional
Probab=23.59 E-value=5.4e+02 Score=30.03 Aligned_cols=102 Identities=14% Similarity=0.125 Sum_probs=67.6
Q ss_pred HHHHHHHHHHhCCCeEEE--ECCHHHHHHHHHhcCCCceEEEEecCC----C-CCCHHHHHHHH---hccCCCCEEEEEc
Q 007940 29 WLKILEKMLKKCSYEVTT--CGLARDALSLLRERKDGYDIVISDVNM----P-DMDGFKLLEHV---GLEMDLPVIMMSV 98 (584)
Q Consensus 29 ~r~~L~~lL~~~gy~V~~--a~~~~eAL~~L~~~~~~pDLVIlDi~M----P-dmdGlELL~~I---r~~~~iPVIvlSa 98 (584)
....+-..|++.|+.+.. ++++...+..|.... +|.|=+|-.. . +.....+++.| .....+.||+ .+
T Consensus 542 ~~~~~l~~L~~~G~~ialDdfGtg~ssl~~L~~l~--~d~iKiD~sfv~~i~~~~~~~~~v~~ii~~a~~lg~~viA-eG 618 (663)
T PRK10060 542 LALSVIQQFSQLGAQVHLDDFGTGYSSLSQLARFP--IDAIKLDQSFVRDIHKQPVSQSLVRAIVAVAQALNLQVIA-EG 618 (663)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCchhhHHHHHhCC--CCEEEECHHHHhccccCcchHHHHHHHHHHHHHCCCcEEE-ec
Confidence 334445667888988774 677788888888754 9999999633 2 23345556655 2234666664 34
Q ss_pred CCChHHHHhhhhcCCc---e-EEeCCCCHHHHHHHHHHH
Q 007940 99 DGETSRVMKGVQHGAC---D-YLLKPIRMKELRNIWQHV 133 (584)
Q Consensus 99 ~~d~~~~~~aL~~GAd---D-YL~KP~~~~eL~~aI~~v 133 (584)
-.+.+....+.+.|++ + |+.||...+++...+++.
T Consensus 619 VEt~~q~~~l~~~G~d~~QGy~~~~P~~~~~~~~~l~~~ 657 (663)
T PRK10060 619 VETAKEDAFLTKNGVNERQGFLFAKPMPAVAFERWYKRY 657 (663)
T ss_pred CCCHHHHHHHHHcCCCEEecCccCCCCCHHHHHHHHHhh
Confidence 4555666666788876 3 578999999987766543
No 394
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=23.45 E-value=4.5e+02 Score=28.21 Aligned_cols=77 Identities=23% Similarity=0.267 Sum_probs=46.9
Q ss_pred CEEEEEeCCHHHH----HHHHHHHHhCCCeEEEEC------C---HHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHH
Q 007940 18 LRVLVVDDDLAWL----KILEKMLKKCSYEVTTCG------L---ARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEH 84 (584)
Q Consensus 18 mrVLIVDDd~~~r----~~L~~lL~~~gy~V~~a~------~---~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~ 84 (584)
-|+|||-|..... +.+...|+..|+.+..+. + ..++++.++.. .+|+||- +-+..-+++.+.
T Consensus 24 ~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~--~~d~Iia---iGGGs~~D~AK~ 98 (370)
T cd08551 24 RKALIVTDPGLVKTGVLDKVIDSLKEAGIEVVIFDGVEPNPTLSNVDAAVAAYREE--GCDGVIA---VGGGSVLDTAKA 98 (370)
T ss_pred CeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCCCHHHHHHHHHHHHhc--CCCEEEE---eCCchHHHHHHH
Confidence 4899998865543 567788887776655443 1 24555555553 3888763 345555666655
Q ss_pred Hhc------------------cCCCCEEEEEcC
Q 007940 85 VGL------------------EMDLPVIMMSVD 99 (584)
Q Consensus 85 Ir~------------------~~~iPVIvlSa~ 99 (584)
+.. .+.+|+|.+...
T Consensus 99 va~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTt 131 (370)
T cd08551 99 IALLATNPGDIWDYEGGKPVIKPALPLIAIPTT 131 (370)
T ss_pred HHHHHhCCCcHHHHhCcccccCCCCCEEEecCC
Confidence 421 126798888544
No 395
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=23.45 E-value=5.1e+02 Score=27.58 Aligned_cols=96 Identities=13% Similarity=0.108 Sum_probs=59.1
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEE------ECC---HHHHHHHHHhcCCCceEEEEecCC-CC-C---CHHHHHHHH
Q 007940 20 VLVVDDDLAWLKILEKMLKKCSYEVTT------CGL---ARDALSLLRERKDGYDIVISDVNM-PD-M---DGFKLLEHV 85 (584)
Q Consensus 20 VLIVDDd~~~r~~L~~lL~~~gy~V~~------a~~---~~eAL~~L~~~~~~pDLVIlDi~M-Pd-m---dGlELL~~I 85 (584)
-.++.|.....++++.+-+..++.|.+ -.+ ..+....+.+. +.|.|.+.-.. ++ . -.+++++++
T Consensus 112 s~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~~~~~~~~~~~a~~le~~--G~d~i~vh~rt~~~~~~G~a~~~~i~~i 189 (321)
T PRK10415 112 SALLQYPDLVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCVEIAQLAEDC--GIQALTIHGRTRACLFNGEAEYDSIRAV 189 (321)
T ss_pred cHHhcCHHHHHHHHHHHHHhcCCceEEEEEccccCCcchHHHHHHHHHHh--CCCEEEEecCccccccCCCcChHHHHHH
Confidence 345566666777777776655433331 111 22333344432 36777665432 21 1 237888888
Q ss_pred hccCCCCEEEEEcCCChHHHHhhhh-cCCceEE
Q 007940 86 GLEMDLPVIMMSVDGETSRVMKGVQ-HGACDYL 117 (584)
Q Consensus 86 r~~~~iPVIvlSa~~d~~~~~~aL~-~GAdDYL 117 (584)
+...++|||..-.-.+.+.+.++++ .||+...
T Consensus 190 k~~~~iPVI~nGgI~s~~da~~~l~~~gadgVm 222 (321)
T PRK10415 190 KQKVSIPVIANGDITDPLKARAVLDYTGADALM 222 (321)
T ss_pred HHhcCCcEEEeCCCCCHHHHHHHHhccCCCEEE
Confidence 7777899998777778888889997 5888764
No 396
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=23.44 E-value=5.8e+02 Score=27.21 Aligned_cols=56 Identities=21% Similarity=0.243 Sum_probs=31.4
Q ss_pred CCCCEEEEEeCCHHHH---HHHHHHHHhCCCeEEEEC---CH----HHHHHHHHhcCCCceEEEEecC
Q 007940 15 PAGLRVLVVDDDLAWL---KILEKMLKKCSYEVTTCG---LA----RDALSLLRERKDGYDIVISDVN 72 (584)
Q Consensus 15 p~gmrVLIVDDd~~~r---~~L~~lL~~~gy~V~~a~---~~----~eAL~~L~~~~~~pDLVIlDi~ 72 (584)
+.+.+|+|++-|.... +.+.......+..+.... +. .+++..... ..+|+||+|.-
T Consensus 140 ~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~~~--~~~D~ViIDTa 205 (318)
T PRK10416 140 AQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAAKA--RGIDVLIIDTA 205 (318)
T ss_pred hcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHHHh--CCCCEEEEeCC
Confidence 4567999999876332 334444455554444332 11 233333332 34999999983
No 397
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=23.34 E-value=4.5e+02 Score=27.44 Aligned_cols=85 Identities=19% Similarity=0.142 Sum_probs=53.2
Q ss_pred HHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHH----HHHHhcc-C-CCCEEEEEcCCCh
Q 007940 30 LKILEKMLKKCSYEVT-TCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKL----LEHVGLE-M-DLPVIMMSVDGET 102 (584)
Q Consensus 30 r~~L~~lL~~~gy~V~-~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlEL----L~~Ir~~-~-~iPVIvlSa~~d~ 102 (584)
.+.|.+.-...|+++. .+.+.+|+-.++.- . .. |+-++--+...+++ .+.+... + +.-+|.-|+-...
T Consensus 145 l~el~~~A~~LGm~~LVEVh~~eEl~rAl~~-g--a~--iIGINnRdL~tf~vdl~~t~~la~~~p~~~~~IsESGI~~~ 219 (254)
T COG0134 145 LEELVDRAHELGMEVLVEVHNEEELERALKL-G--AK--IIGINNRDLTTLEVDLETTEKLAPLIPKDVILISESGISTP 219 (254)
T ss_pred HHHHHHHHHHcCCeeEEEECCHHHHHHHHhC-C--CC--EEEEeCCCcchheecHHHHHHHHhhCCCCcEEEecCCCCCH
Confidence 3445555567788765 77888888777763 2 33 55555555444443 3333222 1 2334444556778
Q ss_pred HHHHhhhhcCCceEEeC
Q 007940 103 SRVMKGVQHGACDYLLK 119 (584)
Q Consensus 103 ~~~~~aL~~GAdDYL~K 119 (584)
+.+......||+.||+-
T Consensus 220 ~dv~~l~~~ga~a~LVG 236 (254)
T COG0134 220 EDVRRLAKAGADAFLVG 236 (254)
T ss_pred HHHHHHHHcCCCEEEec
Confidence 89999999999999974
No 398
>PRK03612 spermidine synthase; Provisional
Probab=23.34 E-value=3.6e+02 Score=30.75 Aligned_cols=55 Identities=25% Similarity=0.285 Sum_probs=36.0
Q ss_pred CEEEEEeCCHHHHHHHHH--HHHhC---C---CeEE-EECCHHHHHHHHHhcCCCceEEEEecCCCC
Q 007940 18 LRVLVVDDDLAWLKILEK--MLKKC---S---YEVT-TCGLARDALSLLRERKDGYDIVISDVNMPD 75 (584)
Q Consensus 18 mrVLIVDDd~~~r~~L~~--lL~~~---g---y~V~-~a~~~~eAL~~L~~~~~~pDLVIlDi~MPd 75 (584)
-+|.+||=|+.+.+..++ .+... . -++. ...++.+.+. .....||+|++|...|.
T Consensus 322 ~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~---~~~~~fDvIi~D~~~~~ 385 (521)
T PRK03612 322 EQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLR---KLAEKFDVIIVDLPDPS 385 (521)
T ss_pred CeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHH---hCCCCCCEEEEeCCCCC
Confidence 599999999999998887 33321 1 1232 3455555443 33345999999976654
No 399
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=23.34 E-value=4.3e+02 Score=28.18 Aligned_cols=77 Identities=13% Similarity=0.179 Sum_probs=48.2
Q ss_pred CCEEEEEeCCHHH---HHHHHHHHHhCCCeEEEEC------C---HHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHH
Q 007940 17 GLRVLVVDDDLAW---LKILEKMLKKCSYEVTTCG------L---ARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEH 84 (584)
Q Consensus 17 gmrVLIVDDd~~~---r~~L~~lL~~~gy~V~~a~------~---~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~ 84 (584)
+-|+|||-|.... .+.+...|++.|..+..+. + ..++.+..++. .+|+||- +-+..-+++.+.
T Consensus 22 ~~r~liv~d~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~--~~d~iia---vGGGs~~D~aK~ 96 (345)
T cd08171 22 GKKVVVIGGKTALAAAKDKIKAALEQSGIEITDFIWYGGESTYENVERLKKNPAVQ--EADMIFA---VGGGKAIDTVKV 96 (345)
T ss_pred CCEEEEEeCHHHHHHHHHHHHHHHHHCCCeEEEEEecCCCCCHHHHHHHHHHHhhc--CCCEEEE---eCCcHHHHHHHH
Confidence 4689999997543 3556677777675543221 1 23444544443 4888874 456677778877
Q ss_pred HhccCCCCEEEEEc
Q 007940 85 VGLEMDLPVIMMSV 98 (584)
Q Consensus 85 Ir~~~~iPVIvlSa 98 (584)
+.....+|+|.+-.
T Consensus 97 ia~~~~~p~i~VPT 110 (345)
T cd08171 97 LADKLGKPVFTFPT 110 (345)
T ss_pred HHHHcCCCEEEecC
Confidence 75555788887743
No 400
>PRK10867 signal recognition particle protein; Provisional
Probab=23.24 E-value=6.9e+02 Score=28.02 Aligned_cols=54 Identities=30% Similarity=0.380 Sum_probs=32.0
Q ss_pred CCEEEEEeCCHHHH---HHHHHHHHhCCCeEEEEC---CHH----HHHHHHHhcCCCceEEEEecC
Q 007940 17 GLRVLVVDDDLAWL---KILEKMLKKCSYEVTTCG---LAR----DALSLLRERKDGYDIVISDVN 72 (584)
Q Consensus 17 gmrVLIVDDd~~~r---~~L~~lL~~~gy~V~~a~---~~~----eAL~~L~~~~~~pDLVIlDi~ 72 (584)
|.+|++|+-|..-. +.++.+.+..|..+.... +.. ++++..+. ..+|+||+|.-
T Consensus 129 G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~~a~~--~~~DvVIIDTa 192 (433)
T PRK10867 129 KKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALEEAKE--NGYDVVIVDTA 192 (433)
T ss_pred CCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHHHHHh--cCCCEEEEeCC
Confidence 67899999885433 344455566665555432 332 33333333 34999999983
No 401
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=23.15 E-value=1.2e+02 Score=31.04 Aligned_cols=58 Identities=26% Similarity=0.412 Sum_probs=38.8
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhCC-------CeEEEECCHHHHHHHHHhcCC-CceEEEEecCCCCCCH
Q 007940 17 GLRVLVVDDDLAWLKILEKMLKKCS-------YEVTTCGLARDALSLLRERKD-GYDIVISDVNMPDMDG 78 (584)
Q Consensus 17 gmrVLIVDDd~~~r~~L~~lL~~~g-------y~V~~a~~~~eAL~~L~~~~~-~pDLVIlDi~MPdmdG 78 (584)
-.+|-+||=|+.+.+..++.+.... .++ ...+|.. .+++... .||+||+|+.-|...+
T Consensus 100 ~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i-~~~Dg~~---~l~~~~~~~yDvIi~D~~dp~~~~ 165 (246)
T PF01564_consen 100 VESITVVEIDPEVVELARKYFPEFSEGLDDPRVRI-IIGDGRK---FLKETQEEKYDVIIVDLTDPDGPA 165 (246)
T ss_dssp -SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEE-EESTHHH---HHHTSSST-EEEEEEESSSTTSCG
T ss_pred cceEEEEecChHHHHHHHHhchhhccccCCCceEE-EEhhhHH---HHHhccCCcccEEEEeCCCCCCCc
Confidence 3589999999999999998876421 233 4455554 4444444 6999999998876543
No 402
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=23.08 E-value=3e+02 Score=30.01 Aligned_cols=53 Identities=11% Similarity=-0.030 Sum_probs=38.0
Q ss_pred CceEEEEecCCCCCC-HHHHHHHHhcc-CCCCEEEEEcCCChHHHHhhhhcCCceE
Q 007940 63 GYDIVISDVNMPDMD-GFKLLEHVGLE-MDLPVIMMSVDGETSRVMKGVQHGACDY 116 (584)
Q Consensus 63 ~pDLVIlDi~MPdmd-GlELL~~Ir~~-~~iPVIvlSa~~d~~~~~~aL~~GAdDY 116 (584)
.+|+|++|+.--... -++.+++|+.. ++++|| .-.-...+.+...+.+|||..
T Consensus 122 g~D~iviD~AhGhs~~~i~~ik~ik~~~P~~~vI-aGNV~T~e~a~~Li~aGAD~v 176 (346)
T PRK05096 122 ALNFICIDVANGYSEHFVQFVAKAREAWPDKTIC-AGNVVTGEMVEELILSGADIV 176 (346)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHHHhCCCCcEE-EecccCHHHHHHHHHcCCCEE
Confidence 589999999654433 36778888755 566544 444567788888999999965
No 403
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=22.99 E-value=4.2e+02 Score=30.94 Aligned_cols=91 Identities=22% Similarity=0.275 Sum_probs=45.1
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCH--HHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCCE
Q 007940 17 GLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLA--RDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGL-EMDLPV 93 (584)
Q Consensus 17 gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~--~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~-~~~iPV 93 (584)
++.+.+||.|+...+.+++ .|+.+.. +++ .+.++...- +..++|++-+.-+.. -..++..++. .+++++
T Consensus 423 g~~vvvID~d~~~v~~~~~----~g~~v~~-GDat~~~~L~~agi--~~A~~vvv~~~d~~~-n~~i~~~ar~~~p~~~i 494 (621)
T PRK03562 423 GVKMTVLDHDPDHIETLRK----FGMKVFY-GDATRMDLLESAGA--AKAEVLINAIDDPQT-SLQLVELVKEHFPHLQI 494 (621)
T ss_pred CCCEEEEECCHHHHHHHHh----cCCeEEE-EeCCCHHHHHhcCC--CcCCEEEEEeCCHHH-HHHHHHHHHHhCCCCeE
Confidence 4556666666654443332 3555442 222 223332221 235666665533222 2344444443 467777
Q ss_pred EEEEcCCChHHHHhhhhcCCceEE
Q 007940 94 IMMSVDGETSRVMKGVQHGACDYL 117 (584)
Q Consensus 94 IvlSa~~d~~~~~~aL~~GAdDYL 117 (584)
|+-+ .+.+...+..++||+..+
T Consensus 495 iaRa--~d~~~~~~L~~~Gad~v~ 516 (621)
T PRK03562 495 IARA--RDVDHYIRLRQAGVEKPE 516 (621)
T ss_pred EEEE--CCHHHHHHHHHCCCCEEe
Confidence 6544 344556667778888543
No 404
>TIGR00642 mmCoA_mut_beta methylmalonyl-CoA mutase, heterodimeric type, beta chain. The adenosylcobalamin-binding, catalytic chain of methylmalonyl-CoA mutase may form homodimers, as in mitochondrion and E. coli, or heterodimers with a shorter, homologous chain that does not bind adenosylcobalamin. This model describes this non-catalytic beta chain, as found in the enzyme from Propionibacterium freudenreichii, for which the 3-dimensional structure has been solved.
Probab=22.97 E-value=6.2e+02 Score=29.81 Aligned_cols=97 Identities=3% Similarity=-0.035 Sum_probs=61.9
Q ss_pred HHHHHHHHhCCCeEEE---ECCHHHHHHHHHhcCCCceEEEEecCCCC--CCHHHHHHHHhccCCCCEEEEEcCCChHHH
Q 007940 31 KILEKMLKKCSYEVTT---CGLARDALSLLRERKDGYDIVISDVNMPD--MDGFKLLEHVGLEMDLPVIMMSVDGETSRV 105 (584)
Q Consensus 31 ~~L~~lL~~~gy~V~~---a~~~~eAL~~L~~~~~~pDLVIlDi~MPd--mdGlELL~~Ir~~~~iPVIvlSa~~d~~~~ 105 (584)
.-...+|..-|+++.. +.+.+++.+...... .+++++.-.-.. -.+-++++.|+..... .|++.+.... .
T Consensus 513 ~Fa~nff~~gG~~~~~~~~~~~~~~~~~a~~~sg--a~i~viCssD~~Y~~~a~~~~~al~~ag~~-~v~lAG~p~~--~ 587 (619)
T TIGR00642 513 GFSSNVWHIAGIDTIQVEGGTTAEIVVEAFKKAG--AQVAVLCSSDKVYAQQGLEVAKALKAAGAK-ALYLAGAFKE--F 587 (619)
T ss_pred HHHHhHHhcCceeeccCCCCCCHHHHHHHHHhcC--CCEEEEeCCCcchHHHHHHHHHHHHhCCCC-EEEEeCCCcc--h
Confidence 3345556666677762 345677777776643 777777654322 3466788888755444 6667666543 3
Q ss_pred HhhhhcCCceEEeCCCCHHHHHHHHHH
Q 007940 106 MKGVQHGACDYLLKPIRMKELRNIWQH 132 (584)
Q Consensus 106 ~~aL~~GAdDYL~KP~~~~eL~~aI~~ 132 (584)
.+...+|+++||.--.+.-+++..+++
T Consensus 588 ~~~~~aGvd~fi~~g~d~~~~L~~~~~ 614 (619)
T TIGR00642 588 GDDAAEAIDGRLFMKMNVVDTLSSTLD 614 (619)
T ss_pred hhHHhcCCcceeEcCCcHHHHHHHHHH
Confidence 346788999999988877766655544
No 405
>PRK15320 transcriptional activator SprB; Provisional
Probab=22.92 E-value=2.6e+02 Score=28.47 Aligned_cols=98 Identities=16% Similarity=0.080 Sum_probs=57.7
Q ss_pred EEEEEeCCHHHHHHHHHHHHhC--CCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCCEEEE
Q 007940 19 RVLVVDDDLAWLKILEKMLKKC--SYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMM 96 (584)
Q Consensus 19 rVLIVDDd~~~r~~L~~lL~~~--gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVIvl 96 (584)
+|+|-.|.=...-.++.++++. +..|.+|..-...+..++. .||.+++=.--|...-+-+-.....-++-||+++
T Consensus 3 ~viiyg~~w~~~~a~~~~~~~~~p~~~~~t~~~l~~ll~~l~~---~p~a~lil~l~p~eh~~lf~~l~~~l~~~~v~vv 79 (251)
T PRK15320 3 NVIIYGINWTNCYALQSIFKQKYPEKCVKTCNSLTALLHSLSD---MPDAGLILALNPHEHVYLFHALLTRLQNRKVLVV 79 (251)
T ss_pred cEEEEeccchHHHHHHHHHHHHCCccchhhhhhHHHHHHHHhh---CCCceEEEeeCchhHHHHHHHHHHHcCCCceEEE
Confidence 5777788777777888888764 2456666655566666654 2676666444455444333222223467889988
Q ss_pred EcCCChHHHHhhhhcCCceEEeC
Q 007940 97 SVDGETSRVMKGVQHGACDYLLK 119 (584)
Q Consensus 97 Sa~~d~~~~~~aL~~GAdDYL~K 119 (584)
+..--.....-.--.|+-||+.|
T Consensus 80 ~d~l~~~dr~vl~~~g~~~~~l~ 102 (251)
T PRK15320 80 ADRLYYIDRCVLQYFGVMDYVLK 102 (251)
T ss_pred ecceeehhhhhhhhhcchhHHHH
Confidence 86533222222223577777766
No 406
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=22.78 E-value=8.3e+02 Score=24.93 Aligned_cols=76 Identities=9% Similarity=-0.049 Sum_probs=46.0
Q ss_pred EEEEE-eCCHH---HHHHHHHHHHhCCCeEEE-------ECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc
Q 007940 19 RVLVV-DDDLA---WLKILEKMLKKCSYEVTT-------CGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGL 87 (584)
Q Consensus 19 rVLIV-DDd~~---~r~~L~~lL~~~gy~V~~-------a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~ 87 (584)
||.|+ +|+.. ..+.++..+++.|.+|+. ..+....+..++..+ ||+|++-.. ..++..+++.++.
T Consensus 139 ~vail~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~~~--pd~v~~~~~--~~~~~~~~~~~~~ 214 (312)
T cd06346 139 SVATTYINNDYGVGLADAFTKAFEALGGTVTNVVAHEEGKSSYSSEVAAAAAGG--PDALVVIGY--PETGSGILRSAYE 214 (312)
T ss_pred eEEEEEccCchhhHHHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHhcC--CCEEEEecc--cchHHHHHHHHHH
Confidence 55444 34332 345567778888877652 134556677776644 999988643 3378888888754
Q ss_pred c-CCCCEEEEEc
Q 007940 88 E-MDLPVIMMSV 98 (584)
Q Consensus 88 ~-~~iPVIvlSa 98 (584)
. ...+++..+.
T Consensus 215 ~G~~~~~~~~~~ 226 (312)
T cd06346 215 QGLFDKFLLTDG 226 (312)
T ss_pred cCCCCceEeecc
Confidence 3 3456654433
No 407
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=22.58 E-value=5e+02 Score=27.00 Aligned_cols=91 Identities=12% Similarity=0.022 Sum_probs=57.6
Q ss_pred EEEEEeCCHHHHHH----HHHHHHhCC---CeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-c-C
Q 007940 19 RVLVVDDDLAWLKI----LEKMLKKCS---YEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGL-E-M 89 (584)
Q Consensus 19 rVLIVDDd~~~r~~----L~~lL~~~g---y~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~-~-~ 89 (584)
.|||.|+|-.+.-. +...=+..+ ...+.+.+.+++++++.. .+|.|.+|-.-| +-++++.. . .
T Consensus 150 ~ilikdnHi~~~G~~~~av~~~r~~~~~~~~Igvev~t~eea~~A~~~---gaDyI~ld~~~~-----e~lk~~v~~~~~ 221 (265)
T TIGR00078 150 AVMIKDNHIAAAGSIEKAVKRARAAAPFALKIEVEVESLEEAEEAAEA---GADIIMLDNMKP-----EEIKEAVQLLKG 221 (265)
T ss_pred ceeeeccHHHHhCCHHHHHHHHHHhCCCCCeEEEEeCCHHHHHHHHHc---CCCEEEECCCCH-----HHHHHHHHHhcC
Confidence 57888887554432 222223333 234578899999988753 389999987444 33444321 1 2
Q ss_pred CCCEEEEEcCCChHHHHhhhhcCCceEEe
Q 007940 90 DLPVIMMSVDGETSRVMKGVQHGACDYLL 118 (584)
Q Consensus 90 ~iPVIvlSa~~d~~~~~~aL~~GAdDYL~ 118 (584)
.+|++ .++--+.+.+.+..+.||+.+-+
T Consensus 222 ~ipi~-AsGGI~~~ni~~~a~~Gvd~Isv 249 (265)
T TIGR00078 222 RVLLE-ASGGITLDNLEEYAETGVDVISS 249 (265)
T ss_pred CCcEE-EECCCCHHHHHHHHHcCCCEEEe
Confidence 36655 45666778888999999987654
No 408
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=22.56 E-value=1.2e+03 Score=26.63 Aligned_cols=129 Identities=13% Similarity=0.190 Sum_probs=73.4
Q ss_pred CCCCEEEEEeCCHHHH-HHHHHHHHhCCCeEE---EECCHHHHHHHHHhcCCCceEEEEecCCCCCC---HHHHHHHHh-
Q 007940 15 PAGLRVLVVDDDLAWL-KILEKMLKKCSYEVT---TCGLARDALSLLRERKDGYDIVISDVNMPDMD---GFKLLEHVG- 86 (584)
Q Consensus 15 p~gmrVLIVDDd~~~r-~~L~~lL~~~gy~V~---~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmd---GlELL~~Ir- 86 (584)
..|+|++++-=-+.+- +.-++.--..|-.|. .......-++.+.... ||+||+-=.--+.+ ++...+.|.
T Consensus 70 aGGLkmvv~Glv~~~TaeAAk~AAlgAGA~V~~~~a~~l~~~~l~~I~~~~--PDIILLaGGtDGG~~e~~l~NA~~La~ 147 (463)
T TIGR01319 70 AGGLAMAAIGLVPEITAEAAKRAAHGAGAKIANVYAYDLNNKDIEAIEESN--LDIILFAGGTDGGEEECGIHNAKMLAE 147 (463)
T ss_pred CCChheEEEeccchhhHHHHHHHHhcCCcEEEEEEeecCCHHHHHHHhhcC--CCEEEEeCCcCCCchHHHHHHHHHHHh
Confidence 3568887776555433 222333334465444 3444556667776644 99999864333322 245555664
Q ss_pred ccCCCCEEEEEcCCChHHHHhhhhc-CCceEEeCCC-------CHHHHHHHHHHHHHhcchhhhhhh
Q 007940 87 LEMDLPVIMMSVDGETSRVMKGVQH-GACDYLLKPI-------RMKELRNIWQHVFRKKIHEVRDIE 145 (584)
Q Consensus 87 ~~~~iPVIvlSa~~d~~~~~~aL~~-GAdDYL~KP~-------~~~eL~~aI~~vlrrk~~~~~~~~ 145 (584)
...++|||+--.....+.+.+.|.. |..-|++--+ ..+-.+++|+.++.+++...+...
T Consensus 148 ~~~~~pIIyAGN~~a~~~V~~il~~~~~~~~i~eNV~P~i~~ln~epaR~~I~~vF~~~Iv~akGl~ 214 (463)
T TIGR01319 148 HGLDCAIIVAGNKDIQDEVQEIFDHADIFYRITDNVLPDLDHLNPEAAREAICDIFLKKIVEAKGLD 214 (463)
T ss_pred cCCCCcEEEeCCHHHHHHHHHHHhcCCceEEecCCcCCCCCCcCchHHHHHHHHHHHHHHhcCCCHH
Confidence 3457898876655666667777763 2333454433 355677888888766654444333
No 409
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=22.55 E-value=3.7e+02 Score=27.98 Aligned_cols=87 Identities=17% Similarity=0.119 Sum_probs=52.3
Q ss_pred HHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEecC-CCCCC-HHHHHHHHhcc--CCCCEEEEEcCCChHH
Q 007940 30 LKILEKMLKKCSYEVT-TCGLARDALSLLRERKDGYDIVISDVN-MPDMD-GFKLLEHVGLE--MDLPVIMMSVDGETSR 104 (584)
Q Consensus 30 r~~L~~lL~~~gy~V~-~a~~~~eAL~~L~~~~~~pDLVIlDi~-MPdmd-GlELL~~Ir~~--~~iPVIvlSa~~d~~~ 104 (584)
...|.......|.++. .+.+..|+..++.. +.++|=++-. +.... -++....+... .++.+|.-|+-...+.
T Consensus 147 l~~l~~~a~~lGle~lVEVh~~~El~~al~~---~a~iiGINnRdL~tf~vd~~~~~~l~~~ip~~~~~iseSGI~~~~d 223 (254)
T PF00218_consen 147 LEELLELAHSLGLEALVEVHNEEELERALEA---GADIIGINNRDLKTFEVDLNRTEELAPLIPKDVIVISESGIKTPED 223 (254)
T ss_dssp HHHHHHHHHHTT-EEEEEESSHHHHHHHHHT---T-SEEEEESBCTTTCCBHTHHHHHHHCHSHTTSEEEEESS-SSHHH
T ss_pred HHHHHHHHHHcCCCeEEEECCHHHHHHHHHc---CCCEEEEeCccccCcccChHHHHHHHhhCccceeEEeecCCCCHHH
Confidence 3566666677898765 78899888887753 2677766543 22211 12333344321 2344555556678888
Q ss_pred HHhhhhcCCceEEeC
Q 007940 105 VMKGVQHGACDYLLK 119 (584)
Q Consensus 105 ~~~aL~~GAdDYL~K 119 (584)
+.....+|++.+|+-
T Consensus 224 ~~~l~~~G~davLVG 238 (254)
T PF00218_consen 224 ARRLARAGADAVLVG 238 (254)
T ss_dssp HHHHCTTT-SEEEES
T ss_pred HHHHHHCCCCEEEEC
Confidence 999999999999975
No 410
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=22.51 E-value=2.4e+02 Score=29.38 Aligned_cols=53 Identities=15% Similarity=0.177 Sum_probs=26.2
Q ss_pred CEEEEEeCCHH---HHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEec
Q 007940 18 LRVLVVDDDLA---WLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDV 71 (584)
Q Consensus 18 mrVLIVDDd~~---~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi 71 (584)
.+|.+|+-|+. ..+.+..+-+..+..+..+.+..+....+.... .+|+||+|.
T Consensus 225 ~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~~-~~d~vliDt 280 (282)
T TIGR03499 225 KKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRLR-DKDLILIDT 280 (282)
T ss_pred CeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHcc-CCCEEEEeC
Confidence 56666666652 233333333334444444455544444444432 367777764
No 411
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=22.43 E-value=5.2e+02 Score=22.45 Aligned_cols=83 Identities=12% Similarity=0.021 Sum_probs=46.5
Q ss_pred EEEEEeC--CHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCCEEEE
Q 007940 19 RVLVVDD--DLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMM 96 (584)
Q Consensus 19 rVLIVDD--d~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVIvl 96 (584)
+|+++-. .......+...|...|..+....+..............-=+|++...--..+-.++++..+ ...+++|++
T Consensus 15 ~i~i~g~g~s~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iS~~g~~~~~~~~~~~a~-~~g~~iv~i 93 (139)
T cd05013 15 RIYIFGVGSSGLVAEYLAYKLLRLGKPVVLLSDPHLQLMSAANLTPGDVVIAISFSGETKETVEAAEIAK-ERGAKVIAI 93 (139)
T ss_pred EEEEEEcCchHHHHHHHHHHHHHcCCceEEecCHHHHHHHHHcCCCCCEEEEEeCCCCCHHHHHHHHHHH-HcCCeEEEE
Confidence 4444443 3445566777788888877777666555544432222222333444333334455665554 346889999
Q ss_pred EcCCCh
Q 007940 97 SVDGET 102 (584)
Q Consensus 97 Sa~~d~ 102 (584)
|...+.
T Consensus 94 T~~~~~ 99 (139)
T cd05013 94 TDSANS 99 (139)
T ss_pred cCCCCC
Confidence 987653
No 412
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=22.40 E-value=3.9e+02 Score=26.30 Aligned_cols=68 Identities=22% Similarity=0.297 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHhCCCeEEEECC---H---HHHHHHHHhcCCCceEEEEecCCCCC-CH-HHHHHHHhccCCCCEEEEEc
Q 007940 28 AWLKILEKMLKKCSYEVTTCGL---A---RDALSLLRERKDGYDIVISDVNMPDM-DG-FKLLEHVGLEMDLPVIMMSV 98 (584)
Q Consensus 28 ~~r~~L~~lL~~~gy~V~~a~~---~---~eAL~~L~~~~~~pDLVIlDi~MPdm-dG-lELL~~Ir~~~~iPVIvlSa 98 (584)
.+...+++.+++.||.+..+.. . .+.++.+.... +|.||+.-..++. .+ .+.++.+. ...+|||++-.
T Consensus 16 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~--vdgiIi~~~~~~~~~~~~~~i~~~~-~~~ipvV~i~~ 91 (273)
T cd06292 16 AFAEAIEAALAQYGYTVLLCNTYRGGVSEADYVEDLLARG--VRGVVFISSLHADTHADHSHYERLA-ERGLPVVLVNG 91 (273)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHcC--CCEEEEeCCCCCcccchhHHHHHHH-hCCCCEEEEcC
Confidence 3556778888899998865432 2 24455555543 8988875333322 21 12334442 35789988853
No 413
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=22.38 E-value=2.3e+02 Score=29.52 Aligned_cols=94 Identities=15% Similarity=0.067 Sum_probs=58.1
Q ss_pred EEEEEeCCHHHHHH----HHHHHHhCC---CeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHH-HHHHHhccCC
Q 007940 19 RVLVVDDDLAWLKI----LEKMLKKCS---YEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFK-LLEHVGLEMD 90 (584)
Q Consensus 19 rVLIVDDd~~~r~~----L~~lL~~~g---y~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlE-LL~~Ir~~~~ 90 (584)
.|||-|.|-.+.-. ++.+-+..+ ...+.+.+.+++.+++.. .+|+|.+|-.-| +.+. +++.++..++
T Consensus 153 ~ilikdnHi~~~g~~~~~v~~~r~~~~~~~~I~vev~t~eea~~A~~~---gaD~I~ld~~~~--e~l~~~v~~i~~~~~ 227 (269)
T cd01568 153 AVLIKDNHIAAAGGITEAVKRARAAAPFEKKIEVEVETLEEAEEALEA---GADIIMLDNMSP--EELKEAVKLLKGLPR 227 (269)
T ss_pred eeeecHhHHHHhCCHHHHHHHHHHhCCCCCeEEEecCCHHHHHHHHHc---CCCEEEECCCCH--HHHHHHHHHhccCCC
Confidence 57777777554432 233333333 234577888999888764 389999987555 2222 2233332235
Q ss_pred CCEEEEEcCCChHHHHhhhhcCCceEEe
Q 007940 91 LPVIMMSVDGETSRVMKGVQHGACDYLL 118 (584)
Q Consensus 91 iPVIvlSa~~d~~~~~~aL~~GAdDYL~ 118 (584)
+| |+.++--+.+.+.+....||+.+.+
T Consensus 228 i~-i~asGGIt~~ni~~~a~~Gad~Isv 254 (269)
T cd01568 228 VL-LEASGGITLENIRAYAETGVDVIST 254 (269)
T ss_pred eE-EEEECCCCHHHHHHHHHcCCCEEEE
Confidence 55 4456667788888999999987753
No 414
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=22.37 E-value=4.3e+02 Score=28.36 Aligned_cols=63 Identities=24% Similarity=0.199 Sum_probs=40.2
Q ss_pred CEEEEEeCCHH-HHHHHHHHHHhCCCeEEEEC---------CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHH
Q 007940 18 LRVLVVDDDLA-WLKILEKMLKKCSYEVTTCG---------LARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHV 85 (584)
Q Consensus 18 mrVLIVDDd~~-~r~~L~~lL~~~gy~V~~a~---------~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~I 85 (584)
-|+|||-|... ....+...|++.+..+..+. +..++.+.+++. .+|+||- .-+..-+++.+.+
T Consensus 24 ~~~livtd~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~--~~D~IIa---vGGGs~~D~aK~i 96 (367)
T cd08182 24 KRVLLVTGPRSAIASGLTDILKPLGTLVVVFDDVQPNPDLEDLAAGIRLLREF--GPDAVLA---VGGGSVLDTAKAL 96 (367)
T ss_pred CeEEEEeCchHHHHHHHHHHHHHcCCeEEEEcCcCCCcCHHHHHHHHHHHHhc--CcCEEEE---eCCcHHHHHHHHH
Confidence 48999988765 45678888888776655442 234666666654 3898863 3455555555554
No 415
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=22.30 E-value=3.9e+02 Score=26.03 Aligned_cols=51 Identities=16% Similarity=0.175 Sum_probs=30.0
Q ss_pred CceEEEEecCCCCC---C----HHHHHHHHhccCCCCEEEEEcCCChHHHHhhhhcC-CceE
Q 007940 63 GYDIVISDVNMPDM---D----GFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHG-ACDY 116 (584)
Q Consensus 63 ~pDLVIlDi~MPdm---d----GlELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~G-AdDY 116 (584)
..|.+++|..-++. + ++++++.+. ..+|+++..+ -+.+.+.++++.| ++.+
T Consensus 120 ~aD~il~dt~~~~~~Gg~g~~~~~~~l~~~~--~~~PvilaGG-I~~~Nv~~~i~~~~~~gv 178 (203)
T cd00405 120 EVDAILLDSKSGGGGGGTGKTFDWSLLRGLA--SRKPVILAGG-LTPDNVAEAIRLVRPYGV 178 (203)
T ss_pred cCCEEEEcCCCCCCCCCCcceEChHHhhccc--cCCCEEEECC-CChHHHHHHHHhcCCCEE
Confidence 46788888765431 2 345565554 4577775543 3556666777766 5544
No 416
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=22.29 E-value=8.8e+02 Score=25.40 Aligned_cols=23 Identities=9% Similarity=0.073 Sum_probs=17.7
Q ss_pred ceEEeCCCCHHHHHHHHHHHHHh
Q 007940 114 CDYLLKPIRMKELRNIWQHVFRK 136 (584)
Q Consensus 114 dDYL~KP~~~~eL~~aI~~vlrr 136 (584)
..++.+..+.++|.+.+..++..
T Consensus 319 ~~~~~~~~~~~~l~~~i~~ll~~ 341 (380)
T PRK00025 319 PELLQEEATPEKLARALLPLLAD 341 (380)
T ss_pred hhhcCCCCCHHHHHHHHHHHhcC
Confidence 45677888888998888887753
No 417
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=22.23 E-value=1.4e+02 Score=32.02 Aligned_cols=68 Identities=16% Similarity=0.257 Sum_probs=40.4
Q ss_pred HHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCC------CHHHHHHHHhccCCCCEEEEEcC
Q 007940 30 LKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDM------DGFKLLEHVGLEMDLPVIMMSVD 99 (584)
Q Consensus 30 r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdm------dGlELL~~Ir~~~~iPVIvlSa~ 99 (584)
.-.|.++|.+.+...---.--+-|+...-- ..|++++||--+... .-+..+++++.+.++||+.+|-.
T Consensus 115 lLGI~hLL~R~P~~LSGGEkQRVAIGRALL--t~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPIlYVSHS 188 (352)
T COG4148 115 LLGIEHLLDRYPGTLSGGEKQRVAIGRALL--TAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHS 188 (352)
T ss_pred HhCcHHHHhhCCCccCcchhhHHHHHHHHh--cCCCeeeecCchhhcccchhhHHHHHHHHHHHhcCCCEEEEecC
Confidence 345677777766444211111223321111 239999999754332 34667788888889999999843
No 418
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=22.22 E-value=7.4e+02 Score=24.19 Aligned_cols=51 Identities=16% Similarity=0.081 Sum_probs=33.0
Q ss_pred HHHHHHHHhccCCCCEEEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHH
Q 007940 78 GFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVF 134 (584)
Q Consensus 78 GlELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vl 134 (584)
|..+++.+ ...+|||. +..+ ...+.+..|..+|+.++-+.+.+..+++.+.
T Consensus 277 ~~~~~Ea~--~~G~PvI~-~~~~---~~~e~i~~~~~g~~~~~~~~~~~~~~~~~i~ 327 (353)
T cd03811 277 PNVLLEAM--ALGTPVVA-TDCP---GPREILEDGENGLLVPVGDEAALAAAALALL 327 (353)
T ss_pred CcHHHHHH--HhCCCEEE-cCCC---ChHHHhcCCCceEEECCCCHHHHHHHHHHHH
Confidence 44455554 24678875 3333 3345677788899999999999865555443
No 419
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=22.07 E-value=6.7e+02 Score=31.94 Aligned_cols=104 Identities=15% Similarity=0.263 Sum_probs=65.7
Q ss_pred CCEEEEE----eCCHHHHHHHHHHHHhCCCeEEEECC---HHHHHHHHHhcCCCceEEEEecCCC-CCCHH-HHHHHHhc
Q 007940 17 GLRVLVV----DDDLAWLKILEKMLKKCSYEVTTCGL---ARDALSLLRERKDGYDIVISDVNMP-DMDGF-KLLEHVGL 87 (584)
Q Consensus 17 gmrVLIV----DDd~~~r~~L~~lL~~~gy~V~~a~~---~~eAL~~L~~~~~~pDLVIlDi~MP-dmdGl-ELL~~Ir~ 87 (584)
.-+|++. |-|..=..++.-+|+..||+|+-.+. .++.++.+++.+ +|+|-+-..|. .+..+ ++++.++.
T Consensus 732 ~gkVvlaTV~GDvHDIGKnIV~~~L~~~GfeVIdLG~dVp~e~iv~aa~e~~--~diVgLS~Lmt~t~~~m~~vi~~L~~ 809 (1178)
T TIGR02082 732 KGKIVLATVKGDVHDIGKNIVGVVLSCNGYEVVDLGVMVPIEKILEAAKDHN--ADVIGLSGLITPSLDEMKEVAEEMNR 809 (1178)
T ss_pred CCeEEEEecCCCccHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHhC--CCEEEEcCcccccHHHHHHHHHHHHh
Confidence 3478877 66666677788889999999985543 567777777654 99999987764 34443 45666654
Q ss_pred c-CCCCEEEEEcCCChHHHHh---hhhcCCceEEeCCCC
Q 007940 88 E-MDLPVIMMSVDGETSRVMK---GVQHGACDYLLKPIR 122 (584)
Q Consensus 88 ~-~~iPVIvlSa~~d~~~~~~---aL~~GAdDYL~KP~~ 122 (584)
. ..+||++=-+......+.. ....||+.|..-.+.
T Consensus 810 ~g~~v~v~vGGa~~s~~~~~~~i~~~~~gad~y~~dA~~ 848 (1178)
T TIGR02082 810 RGITIPLLIGGAATSKTHTAVKIAPIYKGPVVYVLDASR 848 (1178)
T ss_pred cCCCceEEEeccccchhHHHhhhhhhccCCeEEecCHHH
Confidence 4 4566665443333333221 123388877765443
No 420
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=22.07 E-value=2.6e+02 Score=29.36 Aligned_cols=60 Identities=15% Similarity=0.295 Sum_probs=0.0
Q ss_pred HHHHHHHh-ccCCCCEEEEE------cCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHhcc
Q 007940 79 FKLLEHVG-LEMDLPVIMMS------VDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKI 138 (584)
Q Consensus 79 lELL~~Ir-~~~~iPVIvlS------a~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrrk~ 138 (584)
+++++.++ ....+|+++|+ ..+-.....++-+.|+++.|+--+..++-......+.+..+
T Consensus 82 lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi 148 (265)
T COG0159 82 LELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGI 148 (265)
T ss_pred HHHHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcCC
No 421
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=22.02 E-value=4e+02 Score=29.17 Aligned_cols=88 Identities=20% Similarity=0.122 Sum_probs=57.4
Q ss_pred HHHHHHHHhCCCeE--EEECCHHHHHHHHHhcCCCceEEEEec-CCCCCC----HHHHHHHHhccCCCCEEEEEcCCChH
Q 007940 31 KILEKMLKKCSYEV--TTCGLARDALSLLRERKDGYDIVISDV-NMPDMD----GFKLLEHVGLEMDLPVIMMSVDGETS 103 (584)
Q Consensus 31 ~~L~~lL~~~gy~V--~~a~~~~eAL~~L~~~~~~pDLVIlDi-~MPdmd----GlELL~~Ir~~~~iPVIvlSa~~d~~ 103 (584)
+.|+.+-+..+..+ ..+-+.++|..++.. ++|.|++-- .-...+ .++++..++....+|||+-.+-..-.
T Consensus 226 ~~i~~ir~~~~~pviiKgV~~~eda~~a~~~---G~d~I~VSnhGGrqld~~~~~~~~L~ei~~~~~~~vi~dGGIr~g~ 302 (361)
T cd04736 226 QDLRWLRDLWPHKLLVKGIVTAEDAKRCIEL---GADGVILSNHGGRQLDDAIAPIEALAEIVAATYKPVLIDSGIRRGS 302 (361)
T ss_pred HHHHHHHHhCCCCEEEecCCCHHHHHHHHHC---CcCEEEECCCCcCCCcCCccHHHHHHHHHHHhCCeEEEeCCCCCHH
Confidence 34555555554333 345678888887764 367765432 222233 47778777654568988877778888
Q ss_pred HHHhhhhcCCceEE-eCCC
Q 007940 104 RVMKGVQHGACDYL-LKPI 121 (584)
Q Consensus 104 ~~~~aL~~GAdDYL-~KP~ 121 (584)
.+.+|+.+||+... -.|+
T Consensus 303 Dv~KALaLGA~aV~iGr~~ 321 (361)
T cd04736 303 DIVKALALGANAVLLGRAT 321 (361)
T ss_pred HHHHHHHcCCCEEEECHHH
Confidence 89999999999864 4454
No 422
>PRK14994 SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase; Provisional
Probab=22.01 E-value=2.5e+02 Score=29.69 Aligned_cols=89 Identities=11% Similarity=0.177 Sum_probs=50.1
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhCCCeEEEECC--HHHHHHHHH-hcCCCceEEEE-ecCCCCC--CHHHHHHHHhccCCC
Q 007940 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTCGL--ARDALSLLR-ERKDGYDIVIS-DVNMPDM--DGFKLLEHVGLEMDL 91 (584)
Q Consensus 18 mrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~--~~eAL~~L~-~~~~~pDLVIl-Di~MPdm--dGlELL~~Ir~~~~i 91 (584)
..|++++|....+..+. .+.- ...+..+.+ ..+..+.+. ....+-+++++ |..+|.. .|..+++.++. ..+
T Consensus 38 aDvI~~edtr~t~~ll~-~~~i-~~~~~~~~~~~~~~~~~~i~~~l~~G~~ValvSdaGdP~I~dpg~~Lv~~~~~-~gi 114 (287)
T PRK14994 38 VDLIAAEDTRHTGLLLQ-HFAI-NARLFALHDHNEQQKAETLLAKLQEGQNIALVSDAGTPLINDPGYHLVRTCRE-AGI 114 (287)
T ss_pred CCEEEEeCCcchHHHHh-hcCC-CCEEEEccCCCHHHHHHHHHHHHHCCCeEEEEccCCCCceeCCHHHHHHHHHH-CCC
Confidence 35788888876544333 2221 223333222 333333222 22233577777 9999975 58999988864 378
Q ss_pred CEEEEEcCCChHHHHhhh
Q 007940 92 PVIMMSVDGETSRVMKGV 109 (584)
Q Consensus 92 PVIvlSa~~d~~~~~~aL 109 (584)
+|.++-+-...-.+..+.
T Consensus 115 ~v~vIPGiSA~~aA~a~s 132 (287)
T PRK14994 115 RVVPLPGPCAAITALSAA 132 (287)
T ss_pred CEEEeCCHHHHHHHHHHc
Confidence 888886654444433333
No 423
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=21.98 E-value=3e+02 Score=29.22 Aligned_cols=46 Identities=11% Similarity=0.066 Sum_probs=28.3
Q ss_pred HHHHHHHhccCCCCEEEEEcCCChHHHHhhhhcCCceEE-eCCCCHH
Q 007940 79 FKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYL-LKPIRMK 124 (584)
Q Consensus 79 lELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL-~KP~~~~ 124 (584)
++.++.++....+||++--...+...+.++++.|+.|++ +||....
T Consensus 229 ~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~G 275 (357)
T cd03316 229 LEGLARLRQATSVPIAAGENLYTRWEFRDLLEAGAVDIIQPDVTKVG 275 (357)
T ss_pred HHHHHHHHHhCCCCEEeccccccHHHHHHHHHhCCCCEEecCccccC
Confidence 444555555556776654334566777788888877765 6665543
No 424
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=21.98 E-value=8e+02 Score=26.84 Aligned_cols=69 Identities=17% Similarity=0.151 Sum_probs=45.1
Q ss_pred ceEEEEecCCCCCCHHH-HHHHHhccCCCCEEEEEc-CCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHH
Q 007940 64 YDIVISDVNMPDMDGFK-LLEHVGLEMDLPVIMMSV-DGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVF 134 (584)
Q Consensus 64 pDLVIlDi~MPdmdGlE-LL~~Ir~~~~iPVIvlSa-~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vl 134 (584)
.+.+|++..-+..=-+| ++..+ .....++.... ..+...+...++.|+++.+.+|-+..+++.....+-
T Consensus 89 ~~~viv~~~dW~iIPlEnlIA~~--~~~~~l~a~v~~~~eA~~a~~~LE~G~dGVvl~~~d~~ei~~~~~~~~ 159 (344)
T PRK02290 89 VDYVIVEGRDWTIIPLENLIADL--GQSGKIIAGVADAEEAKLALEILEKGVDGVLLDPDDPNEIKAIVALIE 159 (344)
T ss_pred CCEEEEECCCCcEecHHHHHhhh--cCCceEEEEeCCHHHHHHHHHHhccCCCeEEECCCCHHHHHHHHHHHh
Confidence 46677766544332233 33444 23444544433 356677889999999999999999999988766543
No 425
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=21.80 E-value=1.7e+02 Score=30.21 Aligned_cols=53 Identities=19% Similarity=0.227 Sum_probs=36.9
Q ss_pred CCCEEEEEe------CCH--HHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEe
Q 007940 16 AGLRVLVVD------DDL--AWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISD 70 (584)
Q Consensus 16 ~gmrVLIVD------Dd~--~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlD 70 (584)
+.+||.|+- .+. .....+.+.|++.|++|.......+.+..+... .+|+|+.=
T Consensus 3 ~~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i~~~~~~~~~~~~~--~~D~v~~~ 63 (304)
T PRK01372 3 MFGKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPIDPGEDIAAQLKEL--GFDRVFNA 63 (304)
T ss_pred CCcEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEEecCcchHHHhccC--CCCEEEEe
Confidence 456888776 222 244678888899999998776666666666553 48999964
No 426
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=21.78 E-value=3e+02 Score=30.78 Aligned_cols=54 Identities=15% Similarity=0.191 Sum_probs=40.3
Q ss_pred CceEEEEecCCCC-CCHHHHHHHHhcc-CCCCEEEEEcCCChHHHHhhhhcCCceEE
Q 007940 63 GYDIVISDVNMPD-MDGFKLLEHVGLE-MDLPVIMMSVDGETSRVMKGVQHGACDYL 117 (584)
Q Consensus 63 ~pDLVIlDi~MPd-mdGlELL~~Ir~~-~~iPVIvlSa~~d~~~~~~aL~~GAdDYL 117 (584)
.+|+|.+|..-.. ....+.+++|+.. +++|||+ ..-...+.+..++++||+.+.
T Consensus 236 G~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~-G~v~t~~~a~~l~~aGad~i~ 291 (450)
T TIGR01302 236 GVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIA-GNVATAEQAKALIDAGADGLR 291 (450)
T ss_pred CCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEE-EeCCCHHHHHHHHHhCCCEEE
Confidence 4899999995543 3457788888766 6788876 344567888899999998763
No 427
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=21.77 E-value=3.9e+02 Score=27.25 Aligned_cols=64 Identities=14% Similarity=0.214 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhCCCeEEEECC---HH---HHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCCEEEEE
Q 007940 29 WLKILEKMLKKCSYEVTTCGL---AR---DALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMS 97 (584)
Q Consensus 29 ~r~~L~~lL~~~gy~V~~a~~---~~---eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVIvlS 97 (584)
+.+.+.+.+++.||.+..+.. .. +.++.+... .+|-||+--........++ +.....+|||++.
T Consensus 74 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~--~vdGiI~~~~~~~~~~~~~---l~~~~~iPvV~i~ 143 (327)
T PRK10423 74 LVRGVERSCFERGYSLVLCNTEGDEQRMNRNLETLMQK--RVDGLLLLCTETHQPSREI---MQRYPSVPTVMMD 143 (327)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHHc--CCCEEEEeCCCcchhhHHH---HHhcCCCCEEEEC
Confidence 345667778888998775433 22 334444443 3788777322111122222 2223478998884
No 428
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=21.70 E-value=8.4e+02 Score=27.10 Aligned_cols=100 Identities=19% Similarity=0.220 Sum_probs=60.4
Q ss_pred CCCCEEEEEeC-CHHHHHHHHHHHHhCCCeEEEECC--HHHHHHHHHhcCCCceEEEEecC-CCCCCH--HHHHHHHhcc
Q 007940 15 PAGLRVLVVDD-DLAWLKILEKMLKKCSYEVTTCGL--ARDALSLLRERKDGYDIVISDVN-MPDMDG--FKLLEHVGLE 88 (584)
Q Consensus 15 p~gmrVLIVDD-d~~~r~~L~~lL~~~gy~V~~a~~--~~eAL~~L~~~~~~pDLVIlDi~-MPdmdG--lELL~~Ir~~ 88 (584)
..|=+||+.+| -...++.+..+|++.|.+|..+.. ..+.++++.. ...++|+++-- -|-|.- +..+.++...
T Consensus 100 ~~GD~vl~~~~~YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~~--~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~ 177 (396)
T COG0626 100 KAGDHVLLPDDLYGGTYRLFEKILQKFGVEVTFVDPGDDEALEAAIKE--PNTKLVFLETPSNPLLEVPDIPAIARLAKA 177 (396)
T ss_pred CCCCEEEecCCccchHHHHHHHHHHhcCeEEEEECCCChHHHHHHhcc--cCceEEEEeCCCCcccccccHHHHHHHHHh
Confidence 44778999888 455778889999999988886664 3455555543 23789999762 233322 2223333222
Q ss_pred CCCCEEEEEcCCChHHHHhhhhcCCceEE
Q 007940 89 MDLPVIMMSVDGETSRVMKGVQHGACDYL 117 (584)
Q Consensus 89 ~~iPVIvlSa~~d~~~~~~aL~~GAdDYL 117 (584)
.. .++++=..-..-...+.+.+|||=.+
T Consensus 178 ~g-~~vvVDNTfatP~~q~PL~~GaDIVv 205 (396)
T COG0626 178 YG-ALVVVDNTFATPVLQRPLELGADIVV 205 (396)
T ss_pred cC-CEEEEECCcccccccChhhcCCCEEE
Confidence 33 44444333333456688888877443
No 429
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=21.66 E-value=3.3e+02 Score=28.61 Aligned_cols=70 Identities=16% Similarity=0.221 Sum_probs=49.8
Q ss_pred ECCHHHHHHHHHhcCCCceEEEEecC--C---CC--CCHHHHHHHHhccCCCCEEEEEcCC-ChHHHHhhhhcCCceEEe
Q 007940 47 CGLARDALSLLRERKDGYDIVISDVN--M---PD--MDGFKLLEHVGLEMDLPVIMMSVDG-ETSRVMKGVQHGACDYLL 118 (584)
Q Consensus 47 a~~~~eAL~~L~~~~~~pDLVIlDi~--M---Pd--mdGlELL~~Ir~~~~iPVIvlSa~~-d~~~~~~aL~~GAdDYL~ 118 (584)
+++.++|.+..+.. ++|.+-+-+. - |+ .=|++.+++|+....+|+++.-+.+ ..+.+.++++.|++.+=+
T Consensus 152 ~t~~eea~~f~~~t--g~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~~~iPlV~hG~SGI~~e~~~~~i~~G~~kinv 229 (281)
T PRK06806 152 LTSTTEAKRFAEET--DVDALAVAIGNAHGMYNGDPNLRFDRLQEINDVVHIPLVLHGGSGISPEDFKKCIQHGIRKINV 229 (281)
T ss_pred eCCHHHHHHHHHhh--CCCEEEEccCCCCCCCCCCCccCHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHcCCcEEEE
Confidence 56788888887652 3787777331 1 11 2378999999877789999886443 567788999999887644
No 430
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=21.62 E-value=3e+02 Score=31.23 Aligned_cols=66 Identities=14% Similarity=0.119 Sum_probs=45.2
Q ss_pred CHHHHHHHHHhcCCCceEEEEecCCCCC-CHHHHHHHHhcc-CCCCEEEEEcCCChHHHHhhhhcCCceEE
Q 007940 49 LARDALSLLRERKDGYDIVISDVNMPDM-DGFKLLEHVGLE-MDLPVIMMSVDGETSRVMKGVQHGACDYL 117 (584)
Q Consensus 49 ~~~eAL~~L~~~~~~pDLVIlDi~MPdm-dGlELL~~Ir~~-~~iPVIvlSa~~d~~~~~~aL~~GAdDYL 117 (584)
...+-+..|.+. ..|+|.+|...... .-.+++++|+.. +++|||+ -.-.+.+.+..++++||+..-
T Consensus 225 ~~~~ra~~Lv~a--GVd~i~~D~a~g~~~~~~~~i~~i~~~~~~~~vi~-g~~~t~~~~~~l~~~G~d~i~ 292 (475)
T TIGR01303 225 DVGGKAKALLDA--GVDVLVIDTAHGHQVKMISAIKAVRALDLGVPIVA-GNVVSAEGVRDLLEAGANIIK 292 (475)
T ss_pred cHHHHHHHHHHh--CCCEEEEeCCCCCcHHHHHHHHHHHHHCCCCeEEE-eccCCHHHHHHHHHhCCCEEE
Confidence 334445555543 48999999987543 336678888754 5788775 335677888999999997653
No 431
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=21.61 E-value=3e+02 Score=27.71 Aligned_cols=47 Identities=13% Similarity=0.128 Sum_probs=31.2
Q ss_pred CceEEEEecCCC-----CCCHHHHHHHHhccCCCCEEEEEcCCChHHHHhhh
Q 007940 63 GYDIVISDVNMP-----DMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGV 109 (584)
Q Consensus 63 ~pDLVIlDi~MP-----dmdGlELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL 109 (584)
.+|+||+|=-.. -.+--|+++.|...+.--=|++|++.....+.+..
T Consensus 122 ~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~A 173 (198)
T COG2109 122 KYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAPPELIELA 173 (198)
T ss_pred CCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHHHHH
Confidence 499999995321 23445667777666665667789887776665543
No 432
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=21.60 E-value=8.8e+02 Score=24.81 Aligned_cols=56 Identities=9% Similarity=0.091 Sum_probs=33.6
Q ss_pred HHHHHHHhccCCCCEEEEEcCC---ChHHHHhhhhcCCceEEeCCCC--HHHHHHHHHHHHHh
Q 007940 79 FKLLEHVGLEMDLPVIMMSVDG---ETSRVMKGVQHGACDYLLKPIR--MKELRNIWQHVFRK 136 (584)
Q Consensus 79 lELL~~Ir~~~~iPVIvlSa~~---d~~~~~~aL~~GAdDYL~KP~~--~~eL~~aI~~vlrr 136 (584)
..+++.+ ...+|+|+..... ......+.+..+-.++++.+-+ .++|.+++.+++..
T Consensus 261 ~~l~Ea~--~~g~Pvv~~~~~~~~~~~~~~~~~i~~~~~G~~~~~~~~~~~~l~~~i~~ll~~ 321 (348)
T TIGR01133 261 STVAELA--AAGVPAILIPYPYAADDQYYNAKFLEDLGAGLVIRQKELLPEKLLEALLKLLLD 321 (348)
T ss_pred hHHHHHH--HcCCCEEEeeCCCCccchhhHHHHHHHCCCEEEEecccCCHHHHHHHHHHHHcC
Confidence 3444444 2578998764321 1122223455566778877654 89999999888743
No 433
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a
Probab=21.59 E-value=5.1e+02 Score=25.26 Aligned_cols=66 Identities=17% Similarity=0.302 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhCCCeEEEECC---HH---HHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCCEEEEEcC
Q 007940 29 WLKILEKMLKKCSYEVTTCGL---AR---DALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVD 99 (584)
Q Consensus 29 ~r~~L~~lL~~~gy~V~~a~~---~~---eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVIvlSa~ 99 (584)
+...+++.+++.||.+..... .. ++++.+... .+|.||+.-. +.+- ..++.+.....+|||++...
T Consensus 17 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~--~vdgiii~~~--~~~~-~~~~~l~~~~~ipvV~i~~~ 88 (269)
T cd06275 17 VVRGVEQYCYRQGYNLILCNTEGDPERQRSYLRMLAQK--RVDGLLVMCS--EYDQ-PLLAMLERYRHIPMVVMDWG 88 (269)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHHc--CCCEEEEecC--CCCh-HHHHHHHhcCCCCEEEEecc
Confidence 345667778888998775432 22 344444443 3888887432 2221 12233323357899988643
No 434
>PF11072 DUF2859: Protein of unknown function (DUF2859); InterPro: IPR021300 This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=21.54 E-value=5.1e+02 Score=24.74 Aligned_cols=69 Identities=23% Similarity=0.291 Sum_probs=45.7
Q ss_pred CEEEEEeCCHHHHHHHHHH---HHhCCCe--EEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCC
Q 007940 18 LRVLVVDDDLAWLKILEKM---LKKCSYE--VTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLP 92 (584)
Q Consensus 18 mrVLIVDDd~~~r~~L~~l---L~~~gy~--V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iP 92 (584)
.-+.||-||+..++.|+.- |++.+-. |+-+. ..++++.|++.. +.+-|+ -.+|-++.+++. ..+-|
T Consensus 63 ~plFlVGdD~~S~~WL~~~~~~L~~l~AvGlVVNV~-t~~~L~~Lr~la--pgl~l~-----P~sgddLA~rL~-l~HYP 133 (142)
T PF11072_consen 63 QPLFLVGDDPLSRQWLQQNAEELKQLGAVGLVVNVA-TEAALQRLRQLA--PGLPLL-----PVSGDDLARRLG-LSHYP 133 (142)
T ss_pred CCEEEEcCCHHHHHHHHHHHHHHHHCCCeEEEEecC-CHHHHHHHHHHc--CCCeec-----CCCHHHHHHHhC-CCccc
Confidence 3588999999999888765 4444422 22232 357788887754 444443 458999999984 35678
Q ss_pred EEE
Q 007940 93 VIM 95 (584)
Q Consensus 93 VIv 95 (584)
|++
T Consensus 134 vLI 136 (142)
T PF11072_consen 134 VLI 136 (142)
T ss_pred EEe
Confidence 874
No 435
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=21.48 E-value=4e+02 Score=29.24 Aligned_cols=63 Identities=21% Similarity=0.131 Sum_probs=39.7
Q ss_pred CEEEEEeCCHHH----HHHHHHHHHhCCCeEEEEC---------CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHH
Q 007940 18 LRVLVVDDDLAW----LKILEKMLKKCSYEVTTCG---------LARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEH 84 (584)
Q Consensus 18 mrVLIVDDd~~~----r~~L~~lL~~~gy~V~~a~---------~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~ 84 (584)
-++|||-|.... .+.+...|++.|..+..+. ...++.+.+++.+ +|+||- .-|.+-++..|.
T Consensus 50 ~~~lvv~~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~P~~~~v~~~~~~~r~~~--~D~Iia---vGGGS~iD~AKa 124 (395)
T PRK15454 50 KHLFVMADSFLHQAGMTAGLTRSLAVKGIAMTLWPCPVGEPCITDVCAAVAQLRESG--CDGVIA---FGGGSVLDAAKA 124 (395)
T ss_pred CEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcC--cCEEEE---eCChHHHHHHHH
Confidence 478888775432 3567888888887665542 2356777777654 898874 345555555544
Q ss_pred H
Q 007940 85 V 85 (584)
Q Consensus 85 I 85 (584)
+
T Consensus 125 i 125 (395)
T PRK15454 125 V 125 (395)
T ss_pred H
Confidence 3
No 436
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=21.39 E-value=5.1e+02 Score=25.46 Aligned_cols=68 Identities=15% Similarity=0.323 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhCCCeEEEECCH------HHHHHHHHhcCCCceEEEEecCCCCCC--HHHHHHHHhccCCCCEEEEEc
Q 007940 28 AWLKILEKMLKKCSYEVTTCGLA------RDALSLLRERKDGYDIVISDVNMPDMD--GFKLLEHVGLEMDLPVIMMSV 98 (584)
Q Consensus 28 ~~r~~L~~lL~~~gy~V~~a~~~------~eAL~~L~~~~~~pDLVIlDi~MPdmd--GlELL~~Ir~~~~iPVIvlSa 98 (584)
.+...+.+.+++.||.+..+... .++++.+... .+|.||+--..+... ..+.++.+. ...+|||++-.
T Consensus 16 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~--~vdgii~~~~~~~~~~~~~~~~~~~~-~~~ipvV~~~~ 91 (273)
T cd01541 16 SIIRGIESVLSEKGYSLLLASTNNDPERERKCLENMLSQ--GIDGLIIEPTKSALPNPNIDLYLKLE-KLGIPYVFINA 91 (273)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHHc--CCCEEEEeccccccccccHHHHHHHH-HCCCCEEEEec
Confidence 45566778888889988765432 2444445443 389998743222111 123445552 35789998853
No 437
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=21.36 E-value=6.1e+02 Score=26.03 Aligned_cols=38 Identities=16% Similarity=0.309 Sum_probs=29.9
Q ss_pred HHHHHHHhccC--CCCEEEEEcCCChHHHHhhhhcCCceE
Q 007940 79 FKLLEHVGLEM--DLPVIMMSVDGETSRVMKGVQHGACDY 116 (584)
Q Consensus 79 lELL~~Ir~~~--~iPVIvlSa~~d~~~~~~aL~~GAdDY 116 (584)
++.++.++... ++|||....-.+.+.+.+++.+||+..
T Consensus 230 ~~~v~~i~~~~~~~ipiia~GGI~~~~da~~~l~~GAd~V 269 (289)
T cd02810 230 LRWVARLAARLQLDIPIIGVGGIDSGEDVLEMLMAGASAV 269 (289)
T ss_pred HHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCccHh
Confidence 45567776544 799998888888899999999998754
No 438
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=21.32 E-value=4.7e+02 Score=26.18 Aligned_cols=46 Identities=20% Similarity=0.309 Sum_probs=30.6
Q ss_pred CCCHHHHHHHHhc---cCCCC-EEEEEcCCChHHHHhhhhcCCceEEeCC
Q 007940 75 DMDGFKLLEHVGL---EMDLP-VIMMSVDGETSRVMKGVQHGACDYLLKP 120 (584)
Q Consensus 75 dmdGlELL~~Ir~---~~~iP-VIvlSa~~d~~~~~~aL~~GAdDYL~KP 120 (584)
+.||+++++.+.. ....+ -|+..+-.....+.+++.+||+-+-+-|
T Consensus 137 g~dg~~~i~~i~~~~~~~~~~tkil~As~r~~~ei~~a~~~Gad~vTv~~ 186 (211)
T cd00956 137 GGDGMELIREIRTIFDNYGFDTKILAASIRNPQHVIEAALAGADAITLPP 186 (211)
T ss_pred CCCHHHHHHHHHHHHHHcCCCceEEecccCCHHHHHHHHHcCCCEEEeCH
Confidence 5789999888732 22333 3444555677888899999988665544
No 439
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=21.32 E-value=6.1e+02 Score=25.55 Aligned_cols=66 Identities=14% Similarity=0.077 Sum_probs=45.5
Q ss_pred CCHHHHHHHHHhcCCCceEEEEecCC----C--CCCHHHHHHHHhccCCCCEEEEEcCCChHHHHhhhhcCCceEE
Q 007940 48 GLARDALSLLRERKDGYDIVISDVNM----P--DMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYL 117 (584)
Q Consensus 48 ~~~~eAL~~L~~~~~~pDLVIlDi~M----P--dmdGlELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL 117 (584)
.+..++.++.+ .+.|.|.+--.- + .--|+++++++.....+||+.+-+- ..+.+.++++.||+++-
T Consensus 119 ~s~~~a~~A~~---~gaDYv~~Gpv~t~tK~~~~p~gl~~l~~~~~~~~iPvvAIGGI-~~~n~~~~~~~GA~giA 190 (221)
T PRK06512 119 RDRHGAMEIGE---LRPDYLFFGKLGADNKPEAHPRNLSLAEWWAEMIEIPCIVQAGS-DLASAVEVAETGAEFVA 190 (221)
T ss_pred CCHHHHHHhhh---cCCCEEEECCCCCCCCCCCCCCChHHHHHHHHhCCCCEEEEeCC-CHHHHHHHHHhCCCEEE
Confidence 45666665433 247888775432 1 1237888888876678999999765 56777889999999873
No 440
>PLN02275 transferase, transferring glycosyl groups
Probab=21.26 E-value=9.9e+02 Score=25.30 Aligned_cols=102 Identities=18% Similarity=0.177 Sum_probs=63.0
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCCe-EEEEC---CHHHHHHHHHhcCCCceEEEEecCCCCC----CHHHHHHHHhcc
Q 007940 17 GLRVLVVDDDLAWLKILEKMLKKCSYE-VTTCG---LARDALSLLRERKDGYDIVISDVNMPDM----DGFKLLEHVGLE 88 (584)
Q Consensus 17 gmrVLIVDDd~~~r~~L~~lL~~~gy~-V~~a~---~~~eAL~~L~~~~~~pDLVIlDi~MPdm----dGlELL~~Ir~~ 88 (584)
+++.+||-|-+. ++.+++.+++.|.. +.... ..++.-..+.. .|+.++ . .+.. =+..+++.+ .
T Consensus 261 ~i~l~ivG~G~~-~~~l~~~~~~~~l~~v~~~~~~~~~~~~~~~l~~----aDv~v~-~-~~s~~~e~~p~~llEAm--A 331 (371)
T PLN02275 261 RLLFIITGKGPQ-KAMYEEKISRLNLRHVAFRTMWLEAEDYPLLLGS----ADLGVS-L-HTSSSGLDLPMKVVDMF--G 331 (371)
T ss_pred CeEEEEEeCCCC-HHHHHHHHHHcCCCceEEEcCCCCHHHHHHHHHh----CCEEEE-e-ccccccccccHHHHHHH--H
Confidence 588999988764 57788888877643 44322 23455555554 577764 1 1111 134556554 3
Q ss_pred CCCCEEEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHH
Q 007940 89 MDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHV 133 (584)
Q Consensus 89 ~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~v 133 (584)
..+|||.. ..+. ..+.++.|.++|+.. +.++|.+++.++
T Consensus 332 ~G~PVVa~-~~gg---~~eiv~~g~~G~lv~--~~~~la~~i~~l 370 (371)
T PLN02275 332 CGLPVCAV-SYSC---IGELVKDGKNGLLFS--SSSELADQLLEL 370 (371)
T ss_pred CCCCEEEe-cCCC---hHHHccCCCCeEEEC--CHHHHHHHHHHh
Confidence 57899874 3333 346677888999986 478888777654
No 441
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=21.23 E-value=6e+02 Score=26.54 Aligned_cols=41 Identities=17% Similarity=0.215 Sum_probs=31.2
Q ss_pred CHHHHHHHHhccCCCCEEEEEcCCChHHHHhhhhcCCceEE
Q 007940 77 DGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYL 117 (584)
Q Consensus 77 dGlELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL 117 (584)
..+++++.++....+||+..-...+.+.+.++++.|..|++
T Consensus 268 ~~~~~~~~ir~~~~iPVi~~Ggi~t~~~a~~~l~~g~aD~V 308 (327)
T cd02803 268 YFLELAEKIKKAVKIPVIAVGGIRDPEVAEEILAEGKADLV 308 (327)
T ss_pred hhHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCCCCCee
Confidence 34577788876668999887766778889999999666554
No 442
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=21.20 E-value=8.1e+02 Score=24.22 Aligned_cols=63 Identities=19% Similarity=0.244 Sum_probs=37.2
Q ss_pred eEEEEecCCCCCCHHHHHHHHhccCCCCEEEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 007940 65 DIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 136 (584)
Q Consensus 65 DLVIlDi~MPdmdGlELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrr 136 (584)
|++++--.. +.-|..+++.+. ..+|||+ +..+... +.+.. .+++.++-+.+++.+++..++..
T Consensus 270 di~v~ps~~-e~~~~~~~Ea~a--~g~PvI~-~~~~~~~---e~~~~--~g~~~~~~~~~~l~~~i~~l~~~ 332 (365)
T cd03807 270 DVFVLSSLS-EGFPNVLLEAMA--CGLPVVA-TDVGDNA---ELVGD--TGFLVPPGDPEALAEAIEALLAD 332 (365)
T ss_pred CEEEeCCcc-ccCCcHHHHHHh--cCCCEEE-cCCCChH---HHhhc--CCEEeCCCCHHHHHHHHHHHHhC
Confidence 455543222 223455566553 4688875 3333322 22222 56889999999999999888753
No 443
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=21.14 E-value=6.6e+02 Score=26.70 Aligned_cols=104 Identities=20% Similarity=0.263 Sum_probs=60.9
Q ss_pred CCCCCCCEEEEEeCCHHHHHHHHHHHHhCCCeEE-----EECCHHHHHHHHHhcCCCceEEEEec---CCCC------CC
Q 007940 12 TFNPAGLRVLVVDDDLAWLKILEKMLKKCSYEVT-----TCGLARDALSLLRERKDGYDIVISDV---NMPD------MD 77 (584)
Q Consensus 12 ~f~p~gmrVLIVDDd~~~r~~L~~lL~~~gy~V~-----~a~~~~eAL~~L~~~~~~pDLVIlDi---~MPd------md 77 (584)
.| ...=|||=+|-|+..++.--++-++.|..+. .-...+....++.+.+ ||++++-= ..-+ ++
T Consensus 100 ~f-~~PGrVLHiDGD~~YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll~~~~--PDIlViTGHD~~~K~~~d~~dl~ 176 (283)
T TIGR02855 100 YF-GMPGRVLHIDGDPEYLRKCLKLYKKIGVPVVGIHCKEKEMPEKVLDLIEEVR--PDILVITGHDAYSKNKGNYMDLN 176 (283)
T ss_pred cC-CCCCcEEeecCCHHHHHHHHHHHHHhCCceEEEEecchhchHHHHHHHHHhC--CCEEEEeCchhhhcCCCChhhhh
Confidence 35 3344999999999999988888888875443 2334556666777755 99998732 2211 11
Q ss_pred H-------HHHHHHHhcc-CCC-CEEEEEcCCChHHHHhhhhcCCceEEeCC
Q 007940 78 G-------FKLLEHVGLE-MDL-PVIMMSVDGETSRVMKGVQHGACDYLLKP 120 (584)
Q Consensus 78 G-------lELL~~Ir~~-~~i-PVIvlSa~~d~~~~~~aL~~GAdDYL~KP 120 (584)
. .|.++..|.. ++. -.|++.+.+ .......+++||+ |-.-|
T Consensus 177 ~YrnSkyFVeaVk~aR~y~~~~D~LVIFAGAC-QS~yEall~AGAN-FASSP 226 (283)
T TIGR02855 177 AYRHSKYFVETVREARKYVPSLDQLVIFAGAC-QSHFESLIRAGAN-FASSP 226 (283)
T ss_pred hhhhhHHHHHHHHHHHhcCCCcccEEEEcchh-HHHHHHHHHcCcc-ccCCc
Confidence 1 1223333322 332 244444433 3445567889987 55545
No 444
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=21.09 E-value=4.7e+02 Score=28.25 Aligned_cols=77 Identities=26% Similarity=0.302 Sum_probs=52.8
Q ss_pred HHhCCCeE-EEECCHHHHHHHHHhcCCCceEEEEecC-CC--------CCCHHHHHHHHhccCC-CCEEEEEcCCChHHH
Q 007940 37 LKKCSYEV-TTCGLARDALSLLRERKDGYDIVISDVN-MP--------DMDGFKLLEHVGLEMD-LPVIMMSVDGETSRV 105 (584)
Q Consensus 37 L~~~gy~V-~~a~~~~eAL~~L~~~~~~pDLVIlDi~-MP--------dmdGlELL~~Ir~~~~-iPVIvlSa~~d~~~~ 105 (584)
+...|..| ..+.+.++|..+.+. +.|.||..=. -- ....+.|+.++....+ +|||.--+-.+.+.+
T Consensus 123 ~~~~g~~v~~~v~~~~~A~~~~~~---G~d~vI~~g~eAGGH~g~~~~~~~t~~Lv~ev~~~~~~iPViAAGGI~dg~~i 199 (336)
T COG2070 123 LKAAGIKVIHSVITVREALKAERA---GADAVIAQGAEAGGHRGGVDLEVSTFALVPEVVDAVDGIPVIAAGGIADGRGI 199 (336)
T ss_pred HHHcCCeEEEEeCCHHHHHHHHhC---CCCEEEecCCcCCCcCCCCCCCccHHHHHHHHHHHhcCCCEEEecCccChHHH
Confidence 33345333 356677777766543 3677776543 11 2234778888877666 999988888999999
Q ss_pred HhhhhcCCceE
Q 007940 106 MKGVQHGACDY 116 (584)
Q Consensus 106 ~~aL~~GAdDY 116 (584)
..|+.+||+..
T Consensus 200 ~AAlalGA~gV 210 (336)
T COG2070 200 AAALALGADGV 210 (336)
T ss_pred HHHHHhccHHH
Confidence 99999999864
No 445
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=21.06 E-value=1e+03 Score=25.34 Aligned_cols=91 Identities=11% Similarity=0.042 Sum_probs=57.7
Q ss_pred EEEEEeCCHHHHHHHHHHH----HhCCC---eEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCC
Q 007940 19 RVLVVDDDLAWLKILEKML----KKCSY---EVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDL 91 (584)
Q Consensus 19 rVLIVDDd~~~r~~L~~lL----~~~gy---~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~i 91 (584)
.|||-|.|-...-.+...+ +..++ ..+.+.+.+++.+++.. ++|+|++|=+-|+ +--++++.++ ..
T Consensus 169 ~iLIkdNHi~~~g~i~~av~~~r~~~~~~~kIeVEv~tleea~~a~~a---gaDiImLDnmspe-~l~~av~~~~---~~ 241 (290)
T PRK06559 169 AIMLKDNHIAAVGSVQKAIAQARAYAPFVKMVEVEVESLAAAEEAAAA---GADIIMLDNMSLE-QIEQAITLIA---GR 241 (290)
T ss_pred eEEEcHHHHHhhccHHHHHHHHHHhCCCCCeEEEECCCHHHHHHHHHc---CCCEEEECCCCHH-HHHHHHHHhc---Cc
Confidence 5788887766554444443 33442 33467889999998864 3899999954332 2223333332 23
Q ss_pred CEEEEEcCCChHHHHhhhhcCCceE
Q 007940 92 PVIMMSVDGETSRVMKGVQHGACDY 116 (584)
Q Consensus 92 PVIvlSa~~d~~~~~~aL~~GAdDY 116 (584)
.++-.|+.-..+.+.+....|+|-.
T Consensus 242 ~~leaSGGI~~~ni~~yA~tGVD~I 266 (290)
T PRK06559 242 SRIECSGNIDMTTISRFRGLAIDYV 266 (290)
T ss_pred eEEEEECCCCHHHHHHHHhcCCCEE
Confidence 4666777888888888888887743
No 446
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=21.03 E-value=2.4e+02 Score=27.83 Aligned_cols=74 Identities=23% Similarity=0.245 Sum_probs=42.0
Q ss_pred EEEEEeCC---------HHHHHHHHHHHH-hCCCeEEEECCHHHHH-HHHHhcCCCceEEEEecCCCC-CCHHHHHHHHh
Q 007940 19 RVLVVDDD---------LAWLKILEKMLK-KCSYEVTTCGLARDAL-SLLRERKDGYDIVISDVNMPD-MDGFKLLEHVG 86 (584)
Q Consensus 19 rVLIVDDd---------~~~r~~L~~lL~-~~gy~V~~a~~~~eAL-~~L~~~~~~pDLVIlDi~MPd-mdGlELL~~Ir 86 (584)
||||+.-. +.....|+.+|+ ..+++|....+....- +.|+ .+|+||+.....+ ++. +..+.|+
T Consensus 1 kvLi~~g~~~~~~h~~~~~~~~~l~~ll~~~~~~~v~~~~~~~~~~~~~L~----~~Dvvv~~~~~~~~l~~-~~~~al~ 75 (217)
T PF06283_consen 1 KVLIFSGGWSGYRHDSIPAAKKALAQLLEESEGFEVTVTEDPDDLTPENLK----GYDVVVFYNTGGDELTD-EQRAALR 75 (217)
T ss_dssp EEEEEES-SHHHCSHHHHHHHHHHHHHHHHTTCEEEEECCSGGCTSHHCHC----T-SEEEEE-SSCCGS-H-HHHHHHH
T ss_pred CEEEEeCCcCCccCccHHHHHHHHHHHhccCCCEEEEEEeCcccCChhHhc----CCCEEEEECCCCCcCCH-HHHHHHH
Confidence 67888766 367788999999 7788888766633211 1232 3899999887753 332 2222222
Q ss_pred c--cCCCCEEEEE
Q 007940 87 L--EMDLPVIMMS 97 (584)
Q Consensus 87 ~--~~~iPVIvlS 97 (584)
. ....++|.+=
T Consensus 76 ~~v~~Ggglv~lH 88 (217)
T PF06283_consen 76 DYVENGGGLVGLH 88 (217)
T ss_dssp HHHHTT-EEEEEG
T ss_pred HHHHcCCCEEEEc
Confidence 1 2456777764
No 447
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=20.95 E-value=3.7e+02 Score=29.00 Aligned_cols=78 Identities=12% Similarity=0.129 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCCEEEEEcCCChHHHH
Q 007940 27 LAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVM 106 (584)
Q Consensus 27 ~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVIvlSa~~d~~~~~ 106 (584)
....+.|.+..++.|..+.+-....++++++.+. ++-++=|.-.++.-+.|++.+.. ...|||+=|+-...+.+.
T Consensus 75 ~e~~~~L~~~~~~~Gi~~~stpfd~~svd~l~~~----~v~~~KIaS~~~~n~pLL~~~A~-~gkPvilStGmatl~Ei~ 149 (329)
T TIGR03569 75 EEDHRELKEYCESKGIEFLSTPFDLESADFLEDL----GVPRFKIPSGEITNAPLLKKIAR-FGKPVILSTGMATLEEIE 149 (329)
T ss_pred HHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhc----CCCEEEECcccccCHHHHHHHHh-cCCcEEEECCCCCHHHHH
Confidence 3456677778888898877666778888888763 33366666677788999999853 477999887776655554
Q ss_pred hhh
Q 007940 107 KGV 109 (584)
Q Consensus 107 ~aL 109 (584)
.|+
T Consensus 150 ~Av 152 (329)
T TIGR03569 150 AAV 152 (329)
T ss_pred HHH
Confidence 444
No 448
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=20.83 E-value=5.1e+02 Score=26.40 Aligned_cols=71 Identities=14% Similarity=0.121 Sum_probs=51.3
Q ss_pred CCHHHHHHHHHhcCCCceEEEEecCCCCC---CHHHHHHHHhccCCCCEEEEEcCCChHHHHhhhhcCCceEEeC
Q 007940 48 GLARDALSLLRERKDGYDIVISDVNMPDM---DGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLK 119 (584)
Q Consensus 48 ~~~~eAL~~L~~~~~~pDLVIlDi~MPdm---dGlELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~K 119 (584)
.+..+..+.+... ..-.++++|+.-.++ .-+++++++.....+||++--.-...+.+.+++..||+..++-
T Consensus 30 ~dp~~~a~~~~~~-G~~~l~v~Dl~~~~~~~~~n~~~i~~i~~~~~~pv~~~GGi~s~~d~~~~~~~Ga~~vivg 103 (254)
T TIGR00735 30 GDPVELAQRYDEE-GADELVFLDITASSEGRTTMIDVVERTAETVFIPLTVGGGIKSIEDVDKLLRAGADKVSIN 103 (254)
T ss_pred CCHHHHHHHHHHc-CCCEEEEEcCCcccccChhhHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 4666766766653 223578889875432 2366778886666789998888888999999999999887654
No 449
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=20.75 E-value=4.6e+02 Score=26.83 Aligned_cols=75 Identities=7% Similarity=0.084 Sum_probs=45.7
Q ss_pred CEEEEEeCCH-HHHHHHHHHHHhCCCeEEEEC-------------CHHHHHHHHHhc-CCCceEEEEecCCCCCCHHHHH
Q 007940 18 LRVLVVDDDL-AWLKILEKMLKKCSYEVTTCG-------------LARDALSLLRER-KDGYDIVISDVNMPDMDGFKLL 82 (584)
Q Consensus 18 mrVLIVDDd~-~~r~~L~~lL~~~gy~V~~a~-------------~~~eAL~~L~~~-~~~pDLVIlDi~MPdmdGlELL 82 (584)
-||.|+---. ..-+.+.+.|+..|++|.... +.....+++++. ...+|.|++-. -.+..++++
T Consensus 121 ~RIalvTPY~~~v~~~~~~~l~~~G~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~~~~~aDAifisC--TnLrt~~vi 198 (239)
T TIGR02990 121 RRISLLTPYTPETSRPMAQYFAVRGFEIVNFTCLGLTDDREMARISPDCIVEAALAAFDPDADALFLSC--TALRAATCA 198 (239)
T ss_pred CEEEEECCCcHHHHHHHHHHHHhCCcEEeeeeccCCCCCceeeecCHHHHHHHHHHhcCCCCCEEEEeC--CCchhHHHH
Confidence 3677777644 345778889999999886441 233444444432 12367666642 244566777
Q ss_pred HHHhccCCCCEE
Q 007940 83 EHVGLEMDLPVI 94 (584)
Q Consensus 83 ~~Ir~~~~iPVI 94 (584)
+.+...-.+|||
T Consensus 199 ~~lE~~lGkPVl 210 (239)
T TIGR02990 199 QRIEQAIGKPVV 210 (239)
T ss_pred HHHHHHHCCCEE
Confidence 777656677885
No 450
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=20.72 E-value=4.5e+02 Score=29.70 Aligned_cols=65 Identities=23% Similarity=0.272 Sum_probs=43.8
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEecCCC-----CC--CHHHHHHHHhccCCCCEEEEEcCCChHHHHhhhhcCCc
Q 007940 46 TCGLARDALSLLRERKDGYDIVISDVNMP-----DM--DGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGAC 114 (584)
Q Consensus 46 ~a~~~~eAL~~L~~~~~~pDLVIlDi~MP-----dm--dGlELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAd 114 (584)
.+.+..++..+.. ..+|.|.+--.-| +. -|++.++.+.....+||+.+-+ -+.+.+.+++..||+
T Consensus 396 S~h~~~e~~~a~~---~gadyi~~gpif~t~tk~~~~~~g~~~~~~~~~~~~~Pv~aiGG-I~~~~~~~~~~~G~~ 467 (502)
T PLN02898 396 SCKTPEQAEQAWK---DGADYIGCGGVFPTNTKANNKTIGLDGLREVCEASKLPVVAIGG-ISASNAASVMESGAP 467 (502)
T ss_pred eCCCHHHHHHHhh---cCCCEEEECCeecCCCCCCCCCCCHHHHHHHHHcCCCCEEEECC-CCHHHHHHHHHcCCC
Confidence 4566666655544 2478887533222 21 2788888886667899998854 456778889999988
No 451
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=20.72 E-value=4.3e+02 Score=26.27 Aligned_cols=69 Identities=16% Similarity=0.215 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHhcCCCce-EEEEecCCCCCCH---HHHHHHHhccCCCCEEEEEcCCChHHHHhhhhcCCceEEe
Q 007940 48 GLARDALSLLRERKDGYD-IVISDVNMPDMDG---FKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLL 118 (584)
Q Consensus 48 ~~~~eAL~~L~~~~~~pD-LVIlDi~MPdmdG---lELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~ 118 (584)
.+..++.+.+.... ++ ++++|+.--+... +++++++.....+||++=..-...+.+.+++..|++..++
T Consensus 30 ~dp~~~a~~~~~~g--~~~i~i~dl~~~~~~~~~n~~~~~~i~~~~~~pv~~~ggi~~~~d~~~~~~~G~~~vil 102 (232)
T TIGR03572 30 GDPVNAARIYNAKG--ADELIVLDIDASKRGREPLFELISNLAEECFMPLTVGGGIRSLEDAKKLLSLGADKVSI 102 (232)
T ss_pred CCHHHHHHHHHHcC--CCEEEEEeCCCcccCCCCCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHcCCCEEEE
No 452
>PRK14099 glycogen synthase; Provisional
Probab=20.70 E-value=9.4e+02 Score=27.00 Aligned_cols=22 Identities=14% Similarity=0.200 Sum_probs=19.0
Q ss_pred CceEEeCCCCHHHHHHHHHHHH
Q 007940 113 ACDYLLKPIRMKELRNIWQHVF 134 (584)
Q Consensus 113 AdDYL~KP~~~~eL~~aI~~vl 134 (584)
..+|+..|.+.++|.+++.+++
T Consensus 421 ~~G~l~~~~d~~~La~ai~~a~ 442 (485)
T PRK14099 421 ATGVQFSPVTADALAAALRKTA 442 (485)
T ss_pred CceEEeCCCCHHHHHHHHHHHH
Confidence 5789999999999999988753
No 453
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=20.68 E-value=8.7e+02 Score=24.42 Aligned_cols=53 Identities=23% Similarity=0.323 Sum_probs=36.8
Q ss_pred HHHHHHHHhccCCCCEEEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 007940 78 GFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 136 (584)
Q Consensus 78 GlELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrr 136 (584)
|..+++.+. ..+|||. +..+. ..+.+..|..+++.+|-+.+++.+++..++..
T Consensus 275 ~~~~~Ea~a--~G~Pvi~-~~~~~---~~~~i~~~~~g~~~~~~~~~~l~~~i~~~~~~ 327 (355)
T cd03799 275 PVVLMEAMA--MGLPVIS-TDVSG---IPELVEDGETGLLVPPGDPEALADAIERLLDD 327 (355)
T ss_pred cHHHHHHHH--cCCCEEe-cCCCC---cchhhhCCCceEEeCCCCHHHHHHHHHHHHhC
Confidence 555666553 5688875 33332 23456667788999999999999999887643
No 454
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=20.65 E-value=8.9e+02 Score=24.50 Aligned_cols=65 Identities=12% Similarity=0.045 Sum_probs=38.4
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhccCCCCEEEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 007940 64 YDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 136 (584)
Q Consensus 64 pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrr 136 (584)
.|++++--.. +.-|+.+++.+. ..+|||+ |..+... +.+.. ...|+..+-..+++.+++.+++..
T Consensus 267 adi~v~ps~~-E~~~~~~lEAma--~G~PvI~-s~~~~~~---~~i~~-~~~~~~~~~~~~~~a~~i~~l~~~ 331 (358)
T cd03812 267 MDVFLFPSLY-EGLPLVLIEAQA--SGLPCIL-SDTITKE---VDLTD-LVKFLSLDESPEIWAEEILKLKSE 331 (358)
T ss_pred cCEEEecccc-cCCCHHHHHHHH--hCCCEEE-EcCCchh---hhhcc-CccEEeCCCCHHHHHHHHHHHHhC
Confidence 3555543221 223555666552 5688885 4433332 22333 346777777889999999988754
No 455
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=20.57 E-value=6.3e+02 Score=24.88 Aligned_cols=64 Identities=17% Similarity=0.285 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhCCCeEEEECC---HH---HHHHHHHhcCCCceEEEEecCCCCCCH-HHHHHHHhccCCCCEEEEE
Q 007940 29 WLKILEKMLKKCSYEVTTCGL---AR---DALSLLRERKDGYDIVISDVNMPDMDG-FKLLEHVGLEMDLPVIMMS 97 (584)
Q Consensus 29 ~r~~L~~lL~~~gy~V~~a~~---~~---eAL~~L~~~~~~pDLVIlDi~MPdmdG-lELL~~Ir~~~~iPVIvlS 97 (584)
+...+++.+++.||.+..+.. .. +.++.+... .+|.||+-- .+.+. .++++++. ...+|||++-
T Consensus 17 ~~~~i~~~~~~~g~~v~~~~~~~~~~~~~~~i~~~~~~--~~Dgiii~~--~~~~~~~~~i~~~~-~~~iPvV~~~ 87 (282)
T cd06318 17 LTEAAKAHAKALGYELISTDAQGDLTKQIADVEDLLTR--GVNVLIINP--VDPEGLVPAVAAAK-AAGVPVVVVD 87 (282)
T ss_pred HHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHc--CCCEEEEec--CCccchHHHHHHHH-HCCCCEEEec
Confidence 345667778889998876543 22 344444443 389888843 22222 24555553 4578999884
No 456
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=20.57 E-value=4.7e+02 Score=28.71 Aligned_cols=100 Identities=18% Similarity=0.161 Sum_probs=0.0
Q ss_pred CCCEEEEEe---------CCHHHHHHHHHHHHhCCCeEEE--ECCHHHHHHHHHhcCCCceEE------------EEecC
Q 007940 16 AGLRVLVVD---------DDLAWLKILEKMLKKCSYEVTT--CGLARDALSLLRERKDGYDIV------------ISDVN 72 (584)
Q Consensus 16 ~gmrVLIVD---------Dd~~~r~~L~~lL~~~gy~V~~--a~~~~eAL~~L~~~~~~pDLV------------IlDi~ 72 (584)
+|..++++. ........|.++++..+..|+. +.+.++|+.+++ .. +|.| .+.+.
T Consensus 154 AGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~~IPVI~G~V~t~e~A~~~~~-aG--aDgV~~G~gg~~~~~~~lg~~ 230 (369)
T TIGR01304 154 AGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGELDVPVIAGGVNDYTTALHLMR-TG--AAGVIVGPGGANTTRLVLGIE 230 (369)
T ss_pred CCCCEEEEeccchhhhccCCCCCHHHHHHHHHHCCCCEEEeCCCCHHHHHHHHH-cC--CCEEEECCCCCcccccccCCC
Q ss_pred CCCCCHHHHHHHHhcc-------CCCCEEEEEcCCChHHHHhhhhcCCceEEe
Q 007940 73 MPDMDGFKLLEHVGLE-------MDLPVIMMSVDGETSRVMKGVQHGACDYLL 118 (584)
Q Consensus 73 MPdmdGlELL~~Ir~~-------~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~ 118 (584)
.|...-+.-+...+.. ..+|||.--.-.....+.+|+.+||+...+
T Consensus 231 ~p~~~ai~d~~~a~~~~~~e~g~r~vpVIAdGGI~tg~di~kAlAlGAdaV~i 283 (369)
T TIGR01304 231 VPMATAIADVAAARRDYLDETGGRYVHVIADGGIETSGDLVKAIACGADAVVL 283 (369)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCCCHHHHHHHHHcCCCEeee
No 457
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=20.49 E-value=9.5e+02 Score=25.63 Aligned_cols=91 Identities=9% Similarity=-0.012 Sum_probs=55.5
Q ss_pred EEEEeCCHHHHHHHHHHH----HhCC--CeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCCE
Q 007940 20 VLVVDDDLAWLKILEKML----KKCS--YEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPV 93 (584)
Q Consensus 20 VLIVDDd~~~r~~L~~lL----~~~g--y~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPV 93 (584)
|||-|.|-...-.+...+ +..+ ...+.+.+.++|.+++.. ++|+|++|-.-| .+--++++.+ ..-..
T Consensus 182 iLikdNHi~~~G~i~~av~~~r~~~~~~kIeVEv~sleea~ea~~~---gaDiI~LDn~s~-e~~~~av~~~---~~~~~ 254 (296)
T PRK09016 182 FLIKENHIIASGSIRQAVEKAFWLHPDVPVEVEVENLDELDQALKA---GADIIMLDNFTT-EQMREAVKRT---NGRAL 254 (296)
T ss_pred hccCHHHHHHhCcHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHc---CCCEEEeCCCCh-HHHHHHHHhh---cCCeE
Confidence 566665544433343433 2333 345578899999999874 379999996544 1222223322 22335
Q ss_pred EEEEcCCChHHHHhhhhcCCceEE
Q 007940 94 IMMSVDGETSRVMKGVQHGACDYL 117 (584)
Q Consensus 94 IvlSa~~d~~~~~~aL~~GAdDYL 117 (584)
|..|+.-+.+.+.+....|+|-+.
T Consensus 255 ieaSGGI~~~ni~~yA~tGVD~Is 278 (296)
T PRK09016 255 LEVSGNVTLETLREFAETGVDFIS 278 (296)
T ss_pred EEEECCCCHHHHHHHHhcCCCEEE
Confidence 667777888888888889987543
No 458
>TIGR03765 ICE_PFL_4695 integrating conjugative element protein, PFL_4695 family. This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=20.42 E-value=5.5e+02 Score=23.35 Aligned_cols=69 Identities=25% Similarity=0.303 Sum_probs=44.9
Q ss_pred EEEEEeCCHHHHHHHHHH---HHhCCCe--EEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCCE
Q 007940 19 RVLVVDDDLAWLKILEKM---LKKCSYE--VTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPV 93 (584)
Q Consensus 19 rVLIVDDd~~~r~~L~~l---L~~~gy~--V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPV 93 (584)
-+.||-||+..+..|++- |++.+-. |+-+. ..++++.+++.. +.+ .|--++|-++.+++. ..+-||
T Consensus 26 p~FlIGdD~~S~~WL~~~~~~L~~l~AvGlVVnV~-t~~~l~~Lr~la--pgl-----~l~P~sgddLa~rL~-l~hYPv 96 (105)
T TIGR03765 26 PLFLIGDDPASRQWLQQNAAALKSLGAVGLVVNVE-TAAALQRLRALA--PGL-----PLLPVSGDDLAERLG-LRHYPV 96 (105)
T ss_pred ceEEEeCCHHHHHHHHHHHHHHHHCCCeEEEEecC-CHHHHHHHHHHc--CCC-----cccCCCHHHHHHHhC-CCcccE
Confidence 578999999998888655 4444422 22233 356778787643 443 344568999999984 356788
Q ss_pred EEE
Q 007940 94 IMM 96 (584)
Q Consensus 94 Ivl 96 (584)
++-
T Consensus 97 Lit 99 (105)
T TIGR03765 97 LIT 99 (105)
T ss_pred EEe
Confidence 753
No 459
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=20.28 E-value=8.4e+02 Score=24.85 Aligned_cols=114 Identities=16% Similarity=0.205 Sum_probs=71.6
Q ss_pred CCCCEEEEEeCCH----HHHHHHHHHHHhCCCeEE--EECCHHHHHHHHHhcCCCceEEEEecCCC-----CCCHHHHHH
Q 007940 15 PAGLRVLVVDDDL----AWLKILEKMLKKCSYEVT--TCGLARDALSLLRERKDGYDIVISDVNMP-----DMDGFKLLE 83 (584)
Q Consensus 15 p~gmrVLIVDDd~----~~r~~L~~lL~~~gy~V~--~a~~~~eAL~~L~~~~~~pDLVIlDi~MP-----dmdGlELL~ 83 (584)
+..+.+-|-|... .....+-..|+..|+.+. -+++|...+..+.... ||.|=+|-.+- ......+++
T Consensus 119 ~~~l~lEitE~~~~~~~~~~~~~l~~L~~~G~~ialDDFGtG~ssl~~L~~l~--~d~iKID~~fi~~i~~~~~~~~iv~ 196 (256)
T COG2200 119 PHRLVLEITESALIDDLDTALALLRQLRELGVRIALDDFGTGYSSLSYLKRLP--PDILKIDRSFVRDLETDARDQAIVR 196 (256)
T ss_pred cceEEEEEeCchhhcCHHHHHHHHHHHHHCCCeEEEECCCCCHHHHHHHhhCC--CCeEEECHHHHhhcccCcchHHHHH
Confidence 3344555555433 134445566777887665 5788899999998855 99999997542 223345666
Q ss_pred HH---hccCCCCEEEEEcCCChHHHHhhhhcCCc----eEEeCCCCHHHHHHHHH
Q 007940 84 HV---GLEMDLPVIMMSVDGETSRVMKGVQHGAC----DYLLKPIRMKELRNIWQ 131 (584)
Q Consensus 84 ~I---r~~~~iPVIvlSa~~d~~~~~~aL~~GAd----DYL~KP~~~~eL~~aI~ 131 (584)
.| .....+.||+=- -...+....+.++|++ .|+.||....++...+.
T Consensus 197 ~iv~la~~l~~~vvaEG-VEt~~ql~~L~~~G~~~~QGylf~~P~~~~~~~~~~~ 250 (256)
T COG2200 197 AIVALAHKLGLTVVAEG-VETEEQLDLLRELGCDYLQGYLFSRPLPADALDALLS 250 (256)
T ss_pred HHHHHHHHCCCEEEEee-cCCHHHHHHHHHcCCCeEeeccccCCCCHHHHHHHHh
Confidence 55 223456665433 3444556666788877 35789999877665443
No 460
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=20.28 E-value=6.8e+02 Score=24.79 Aligned_cols=77 Identities=17% Similarity=0.090 Sum_probs=47.3
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhCCCe-EE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCH--HHHHHHHhcc---CC
Q 007940 18 LRVLVVDDDLAWLKILEKMLKKCSYE-VT-TCGLARDALSLLRERKDGYDIVISDVNMPDMDG--FKLLEHVGLE---MD 90 (584)
Q Consensus 18 mrVLIVDDd~~~r~~L~~lL~~~gy~-V~-~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdG--lELL~~Ir~~---~~ 90 (584)
.+|..||-++...+.+++-++..+.. +. ...+..+.+ ......+|+|++|- |-..| -++++.|... ..
T Consensus 77 ~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l---~~~~~~fDlV~~DP--Py~~g~~~~~l~~l~~~~~l~~ 151 (199)
T PRK10909 77 AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFL---AQPGTPHNVVFVDP--PFRKGLLEETINLLEDNGWLAD 151 (199)
T ss_pred CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHH---hhcCCCceEEEECC--CCCCChHHHHHHHHHHCCCcCC
Confidence 48999999999999999999887642 32 334444433 22223499999986 32333 3455656432 23
Q ss_pred CCEEEEEcC
Q 007940 91 LPVIMMSVD 99 (584)
Q Consensus 91 iPVIvlSa~ 99 (584)
-.+|++...
T Consensus 152 ~~iv~ve~~ 160 (199)
T PRK10909 152 EALIYVESE 160 (199)
T ss_pred CcEEEEEec
Confidence 346666533
No 461
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=20.15 E-value=4.3e+02 Score=29.31 Aligned_cols=93 Identities=14% Similarity=0.139 Sum_probs=48.7
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhCC-CeEEEECCHHHHHHHHHhc-CCCceEEEEecCCCCCCHHHHH-HHHhccCCCCEE
Q 007940 18 LRVLVVDDDLAWLKILEKMLKKCS-YEVTTCGLARDALSLLRER-KDGYDIVISDVNMPDMDGFKLL-EHVGLEMDLPVI 94 (584)
Q Consensus 18 mrVLIVDDd~~~r~~L~~lL~~~g-y~V~~a~~~~eAL~~L~~~-~~~pDLVIlDi~MPdmdGlELL-~~Ir~~~~iPVI 94 (584)
++|||+-- -.+...+.+.|.+.+ ++|.+++-..+..+.+... ......+.+|+. ..+.+ +.|+. .++-|.
T Consensus 2 ~~ilviGa-G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~-----d~~al~~li~~-~d~VIn 74 (389)
T COG1748 2 MKILVIGA-GGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAA-----DVDALVALIKD-FDLVIN 74 (389)
T ss_pred CcEEEECC-chhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEeccc-----ChHHHHHHHhc-CCEEEE
Confidence 46777777 444445555555555 7888777665555555432 123566677763 23233 33332 233222
Q ss_pred EEEcCCChHHHHhhhhcCCceEEe
Q 007940 95 MMSVDGETSRVMKGVQHGACDYLL 118 (584)
Q Consensus 95 vlSa~~d~~~~~~aL~~GAdDYL~ 118 (584)
++-..-+...+..|++.|++ |+.
T Consensus 75 ~~p~~~~~~i~ka~i~~gv~-yvD 97 (389)
T COG1748 75 AAPPFVDLTILKACIKTGVD-YVD 97 (389)
T ss_pred eCCchhhHHHHHHHHHhCCC-EEE
Confidence 33333455555567777754 443
No 462
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=20.15 E-value=4.1e+02 Score=25.83 Aligned_cols=63 Identities=14% Similarity=0.125 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhCCCeEEEECCH------HHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCCEEEEE
Q 007940 29 WLKILEKMLKKCSYEVTTCGLA------RDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMS 97 (584)
Q Consensus 29 ~r~~L~~lL~~~gy~V~~a~~~------~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVIvlS 97 (584)
+.+.+++.++..||.+..+... .++++.+... .+|.||+.-..+. -+.++.+. ...+|||++.
T Consensus 17 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~--~vdgiii~~~~~~---~~~~~~~~-~~~ipvv~~~ 85 (268)
T cd01575 17 VLQGISDVLEAAGYQLLLGNTGYSPEREEELLRTLLSR--RPAGLILTGLEHT---ERTRQLLR-AAGIPVVEIM 85 (268)
T ss_pred HHHHHHHHHHHcCCEEEEecCCCCchhHHHHHHHHHHc--CCCEEEEeCCCCC---HHHHHHHH-hcCCCEEEEe
Confidence 4466777888899988765432 3445555443 3888887543332 23444443 3478999874
No 463
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=20.14 E-value=5.4e+02 Score=27.64 Aligned_cols=92 Identities=13% Similarity=0.129 Sum_probs=54.3
Q ss_pred CHHHHHHHHHHHHhCCC--eEE----EE------CCHHHHHHHHHhcC-CCceEEEEecCC-----CCC-----C--HHH
Q 007940 26 DLAWLKILEKMLKKCSY--EVT----TC------GLARDALSLLRERK-DGYDIVISDVNM-----PDM-----D--GFK 80 (584)
Q Consensus 26 d~~~r~~L~~lL~~~gy--~V~----~a------~~~~eAL~~L~~~~-~~pDLVIlDi~M-----Pdm-----d--GlE 80 (584)
-...+++++.+-+..|- .|. .. .+.++++++++... ..+|+|-+-..+ +.. . -.+
T Consensus 187 ~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~~~g~~~~e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~ 266 (353)
T cd02930 187 MRFPVEIVRAVRAAVGEDFIIIYRLSMLDLVEGGSTWEEVVALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAW 266 (353)
T ss_pred hHHHHHHHHHHHHHcCCCceEEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHH
Confidence 34445566666666663 332 01 14456666554321 236777653211 111 1 245
Q ss_pred HHHHHhccCCCCEEEEEcCCChHHHHhhhhcCCceEE
Q 007940 81 LLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYL 117 (584)
Q Consensus 81 LL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL 117 (584)
+.++++....+||+..-...+.+.+.++++.|..|++
T Consensus 267 ~~~~ik~~v~iPVi~~G~i~~~~~a~~~i~~g~~D~V 303 (353)
T cd02930 267 ATAKLKRAVDIPVIASNRINTPEVAERLLADGDADMV 303 (353)
T ss_pred HHHHHHHhCCCCEEEcCCCCCHHHHHHHHHCCCCChh
Confidence 6677877778998877666788889999999987765
No 464
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=20.10 E-value=6.6e+02 Score=28.16 Aligned_cols=82 Identities=15% Similarity=0.086 Sum_probs=57.0
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHHhCCCe-EE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCCE
Q 007940 16 AGLRVLVVDDDLAWLKILEKMLKKCSYE-VT-TCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPV 93 (584)
Q Consensus 16 ~gmrVLIVDDd~~~r~~L~~lL~~~gy~-V~-~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPV 93 (584)
...+|.=||=.+...+..+.-.+..|.. +. .+.++++......+ ...||+||+|-==.|++ -++++.|.......|
T Consensus 314 ~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~-~~~~d~VvvDPPR~G~~-~~~lk~l~~~~p~~I 391 (432)
T COG2265 314 RVKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWE-GYKPDVVVVDPPRAGAD-REVLKQLAKLKPKRI 391 (432)
T ss_pred cCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccc-cCCCCEEEECCCCCCCC-HHHHHHHHhcCCCcE
Confidence 3468999999999999998888887754 33 56777776665542 23489999995322332 357888866666667
Q ss_pred EEEEcC
Q 007940 94 IMMSVD 99 (584)
Q Consensus 94 IvlSa~ 99 (584)
|.+|..
T Consensus 392 vYVSCN 397 (432)
T COG2265 392 VYVSCN 397 (432)
T ss_pred EEEeCC
Confidence 777754
No 465
>PRK00955 hypothetical protein; Provisional
Probab=20.10 E-value=4.1e+02 Score=31.29 Aligned_cols=106 Identities=14% Similarity=0.165 Sum_probs=62.5
Q ss_pred eCCHHHHHHHHHHHHhCCCeEEEECCH----HHHHHHHHhcCCCceEEEE----------------------ecCCCC--
Q 007940 24 DDDLAWLKILEKMLKKCSYEVTTCGLA----RDALSLLRERKDGYDIVIS----------------------DVNMPD-- 75 (584)
Q Consensus 24 DDd~~~r~~L~~lL~~~gy~V~~a~~~----~eAL~~L~~~~~~pDLVIl----------------------Di~MPd-- 75 (584)
|..+.-..+|.++|+..||.|...... .+.+..+ ..|.|++. |..-|+
T Consensus 26 dhp~fg~a~i~r~L~~~G~~v~ii~qp~~~~~~~~~~~----g~P~l~~~vs~g~~dsmv~~yt~~~~~r~~d~ytpgg~ 101 (620)
T PRK00955 26 DHPSFGTAIIGRVLEAEGFRVGIIAQPNWRDLEDFKKL----GKPRLFFLVSAGNMDSMVNHYTASKKLRSKDAYSPGGK 101 (620)
T ss_pred cCCccHHHHHHHHHHHCCCEEEEecCCCcCChHHHHhh----CCCcEEEEeccccHHHHHhhcchhhhcccccccCCCCc
Confidence 566677899999999999999876533 2233332 23788774 222232
Q ss_pred ------CCHHHHHHHHhc-cCCCCEEEEEcCCChH------HHH-----h-hhhcCCceEEeCCCCHHHHHHHHHHHH
Q 007940 76 ------MDGFKLLEHVGL-EMDLPVIMMSVDGETS------RVM-----K-GVQHGACDYLLKPIRMKELRNIWQHVF 134 (584)
Q Consensus 76 ------mdGlELL~~Ir~-~~~iPVIvlSa~~d~~------~~~-----~-aL~~GAdDYL~KP~~~~eL~~aI~~vl 134 (584)
...+..++.+++ .+++|||+=-.+.... ... . .++.+ .|||+.-.....+.+.++++.
T Consensus 102 ~~~rpdra~i~y~~~ik~~~p~~~IvlGG~eaS~rr~~hyd~w~~~~~~siL~d~~-aD~vv~GeGE~t~~eL~~~L~ 178 (620)
T PRK00955 102 MGLRPDRATIVYCNKIKEAYPDVPIIIGGIEASLRRFAHYDYWSDKVRRSILIDSG-ADLLVYGMGEKPIVEIARRLK 178 (620)
T ss_pred cCCCcchHHHHHHHHHHHHCCCCcEEeCChhhhccccccchhhhhhhhHHHhhccC-CCEEEECCcHHHHHHHHHHHH
Confidence 223444566654 4788877543322221 111 1 23444 489999888888888776643
Done!