Query 007940
Match_columns 584
No_of_seqs 380 out of 2285
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 14:14:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007940.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007940hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3to5_A CHEY homolog; alpha(5)b 99.9 7.7E-25 2.6E-29 201.0 15.9 122 13-136 8-133 (134)
2 3f6p_A Transcriptional regulat 99.9 7.9E-21 2.7E-25 166.0 16.4 118 17-136 2-119 (120)
3 3gl9_A Response regulator; bet 99.9 1.1E-20 3.9E-25 165.8 16.9 116 18-135 3-121 (122)
4 2lpm_A Two-component response 99.9 6.7E-23 2.3E-27 185.7 2.5 114 15-134 6-120 (123)
5 3r0j_A Possible two component 99.8 1.3E-20 4.3E-25 186.2 17.1 121 15-137 21-142 (250)
6 3t6k_A Response regulator rece 99.8 3.8E-20 1.3E-24 165.5 17.5 120 16-137 3-125 (136)
7 2r25_B Osmosensing histidine p 99.8 6.4E-20 2.2E-24 163.3 15.9 119 17-135 2-126 (133)
8 3h1g_A Chemotaxis protein CHEY 99.8 1.6E-19 5.4E-24 159.4 16.1 120 16-136 4-127 (129)
9 3m6m_D Sensory/regulatory prot 99.8 1.8E-19 6.3E-24 162.6 16.0 119 15-135 12-135 (143)
10 3gt7_A Sensor protein; structu 99.8 4.4E-19 1.5E-23 161.8 17.2 121 15-137 5-128 (154)
11 1zgz_A Torcad operon transcrip 99.8 6.9E-19 2.4E-23 152.6 17.5 118 17-136 2-119 (122)
12 3h5i_A Response regulator/sens 99.8 2.8E-19 9.6E-24 160.0 15.3 121 16-137 4-125 (140)
13 2pl1_A Transcriptional regulat 99.8 7.1E-19 2.4E-23 152.0 17.4 117 18-136 1-118 (121)
14 2a9o_A Response regulator; ess 99.8 6.8E-19 2.3E-23 151.6 16.8 117 18-136 2-118 (120)
15 1dbw_A Transcriptional regulat 99.8 8.6E-19 2.9E-23 153.5 17.7 118 17-136 3-121 (126)
16 3rqi_A Response regulator prot 99.8 9.2E-20 3.1E-24 171.9 11.9 120 16-137 6-126 (184)
17 3q9s_A DNA-binding response re 99.8 1.3E-19 4.3E-24 180.2 13.4 119 17-137 37-155 (249)
18 3crn_A Response regulator rece 99.8 7.6E-19 2.6E-23 155.6 16.9 119 17-137 3-122 (132)
19 1xhf_A DYE resistance, aerobic 99.8 9.5E-19 3.3E-23 151.9 17.1 118 17-136 3-120 (123)
20 2qzj_A Two-component response 99.8 6.1E-19 2.1E-23 157.6 16.1 120 16-137 3-122 (136)
21 3hv2_A Response regulator/HD d 99.8 1.1E-18 3.7E-23 158.5 17.6 121 15-137 12-134 (153)
22 1srr_A SPO0F, sporulation resp 99.8 7.1E-19 2.4E-23 153.3 15.6 117 17-135 3-120 (124)
23 1jbe_A Chemotaxis protein CHEY 99.8 1.5E-18 5E-23 151.8 17.4 119 16-136 3-125 (128)
24 1a2o_A CHEB methylesterase; ba 99.8 2.8E-19 9.4E-24 188.1 15.1 210 17-286 3-234 (349)
25 3n0r_A Response regulator; sig 99.8 1.7E-19 5.9E-24 184.3 13.0 117 17-137 160-278 (286)
26 3grc_A Sensor protein, kinase; 99.8 7.5E-19 2.6E-23 156.3 15.4 121 16-138 5-129 (140)
27 3eod_A Protein HNR; response r 99.8 7.1E-19 2.4E-23 154.5 14.8 121 15-137 5-127 (130)
28 1zh2_A KDP operon transcriptio 99.8 1.1E-18 3.7E-23 150.5 15.7 117 18-136 2-118 (121)
29 1tmy_A CHEY protein, TMY; chem 99.8 1.3E-18 4.3E-23 150.5 15.7 116 17-134 2-119 (120)
30 1kgs_A DRRD, DNA binding respo 99.8 1.9E-18 6.5E-23 166.3 18.7 119 17-137 2-121 (225)
31 1i3c_A Response regulator RCP1 99.8 1.5E-18 5.2E-23 157.1 17.0 122 16-137 7-138 (149)
32 3lua_A Response regulator rece 99.8 3.4E-19 1.2E-23 158.9 12.3 120 16-137 3-128 (140)
33 3mm4_A Histidine kinase homolo 99.8 8.8E-19 3E-23 169.0 16.0 121 15-137 59-197 (206)
34 3jte_A Response regulator rece 99.8 2.1E-18 7.3E-23 153.9 17.4 121 17-137 3-124 (143)
35 1mb3_A Cell division response 99.8 1E-18 3.5E-23 151.7 14.7 117 18-136 2-121 (124)
36 3kht_A Response regulator; PSI 99.8 1.3E-18 4.6E-23 155.7 15.8 120 16-137 4-129 (144)
37 1k68_A Phytochrome response re 99.8 2E-18 6.8E-23 151.9 16.6 121 17-137 2-132 (140)
38 3nhm_A Response regulator; pro 99.8 1.9E-18 6.3E-23 152.1 16.1 118 16-137 3-123 (133)
39 3heb_A Response regulator rece 99.8 2.2E-18 7.4E-23 156.0 16.9 120 16-135 3-134 (152)
40 1p6q_A CHEY2; chemotaxis, sign 99.8 1.1E-18 3.7E-23 152.8 14.2 119 16-136 5-127 (129)
41 3kto_A Response regulator rece 99.8 5.6E-19 1.9E-23 157.3 12.3 120 16-137 5-127 (136)
42 1mvo_A PHOP response regulator 99.8 2.9E-18 9.9E-23 151.4 16.7 119 17-137 3-122 (136)
43 3hdg_A Uncharacterized protein 99.8 1.4E-18 4.9E-23 153.9 14.6 120 16-137 6-126 (137)
44 1s8n_A Putative antiterminator 99.8 1.9E-18 6.6E-23 164.8 16.5 121 15-137 11-132 (205)
45 1dz3_A Stage 0 sporulation pro 99.8 1.3E-18 4.6E-23 153.0 14.2 119 17-137 2-124 (130)
46 3hdv_A Response regulator; PSI 99.8 3.5E-18 1.2E-22 151.2 16.9 122 15-137 5-128 (136)
47 2oqr_A Sensory transduction pr 99.8 3.1E-18 1.1E-22 165.7 17.9 119 17-137 4-122 (230)
48 3i42_A Response regulator rece 99.8 1.1E-18 3.6E-23 152.8 13.2 117 17-136 3-122 (127)
49 2jba_A Phosphate regulon trans 99.8 8E-19 2.7E-23 153.0 12.4 118 17-136 2-122 (127)
50 3f6c_A Positive transcription 99.8 9.4E-19 3.2E-23 154.2 12.3 119 18-138 2-122 (134)
51 2gwr_A DNA-binding response re 99.8 1E-18 3.6E-23 171.0 13.9 119 17-137 5-123 (238)
52 3cnb_A DNA-binding response re 99.8 5.4E-18 1.8E-22 150.4 17.2 121 15-137 6-131 (143)
53 3b2n_A Uncharacterized protein 99.8 2.3E-18 7.9E-23 152.7 14.8 118 18-137 4-124 (133)
54 3cfy_A Putative LUXO repressor 99.8 2.5E-18 8.6E-23 153.7 15.1 118 18-137 5-123 (137)
55 3hzh_A Chemotaxis response reg 99.8 2E-18 6.9E-23 157.9 14.7 120 16-135 35-156 (157)
56 1k66_A Phytochrome response re 99.8 4.2E-18 1.4E-22 151.8 16.3 123 15-137 4-139 (149)
57 3ilh_A Two component response 99.8 3.5E-18 1.2E-22 152.1 15.7 122 16-137 8-140 (146)
58 4e7p_A Response regulator; DNA 99.8 3.4E-18 1.1E-22 154.7 15.6 122 15-138 18-142 (150)
59 4dad_A Putative pilus assembly 99.8 1.4E-18 4.7E-23 156.0 12.5 123 15-137 18-142 (146)
60 2zay_A Response regulator rece 99.8 2.5E-18 8.5E-23 154.2 14.2 121 15-137 6-129 (147)
61 3luf_A Two-component system re 99.8 3.7E-18 1.3E-22 171.1 17.0 121 16-137 123-246 (259)
62 3cg4_A Response regulator rece 99.8 3.1E-18 1.1E-22 152.3 14.6 121 15-137 5-128 (142)
63 3n53_A Response regulator rece 99.8 2.4E-18 8.2E-23 153.3 13.8 118 17-137 3-123 (140)
64 3cg0_A Response regulator rece 99.8 6.7E-18 2.3E-22 149.5 16.2 121 15-137 7-129 (140)
65 3eul_A Possible nitrate/nitrit 99.8 5.7E-18 2E-22 153.2 16.0 122 15-138 13-137 (152)
66 3lte_A Response regulator; str 99.8 7.2E-18 2.5E-22 148.1 16.2 121 15-137 4-126 (132)
67 3c3m_A Response regulator rece 99.8 6.4E-18 2.2E-22 150.8 16.0 118 18-137 4-124 (138)
68 2ayx_A Sensor kinase protein R 99.8 4.8E-18 1.7E-22 169.4 16.5 121 15-137 127-248 (254)
69 3kcn_A Adenylate cyclase homol 99.8 8.9E-18 3E-22 152.1 16.3 122 15-138 2-125 (151)
70 3snk_A Response regulator CHEY 99.8 3.7E-19 1.3E-23 157.9 6.9 119 16-136 13-133 (135)
71 1yio_A Response regulatory pro 99.8 4.1E-18 1.4E-22 162.3 14.7 120 16-137 3-123 (208)
72 3a10_A Response regulator; pho 99.8 8.3E-18 2.8E-22 144.5 14.5 113 18-134 2-115 (116)
73 1dcf_A ETR1 protein; beta-alph 99.8 7.4E-18 2.5E-22 149.4 14.6 118 16-136 6-129 (136)
74 2rjn_A Response regulator rece 99.8 1.4E-17 4.9E-22 150.9 16.8 121 15-137 5-127 (154)
75 2qxy_A Response regulator; reg 99.8 8.6E-18 3E-22 149.8 14.9 119 16-137 3-122 (142)
76 2qr3_A Two-component system re 99.8 1.8E-17 6.2E-22 146.7 16.1 119 17-137 3-127 (140)
77 3dzd_A Transcriptional regulat 99.8 3.7E-18 1.3E-22 180.6 13.4 118 18-137 1-119 (368)
78 1a04_A Nitrate/nitrite respons 99.7 1.6E-17 5.6E-22 159.2 16.1 119 17-137 5-126 (215)
79 3kyj_B CHEY6 protein, putative 99.7 3.8E-18 1.3E-22 153.2 10.9 118 12-130 8-129 (145)
80 2gkg_A Response regulator homo 99.7 1.8E-17 6.3E-22 143.4 14.4 116 17-135 5-124 (127)
81 1ys7_A Transcriptional regulat 99.7 1.8E-17 6.1E-22 160.4 15.8 120 16-137 6-126 (233)
82 3cu5_A Two component transcrip 99.7 9.1E-18 3.1E-22 150.8 12.4 118 18-137 3-124 (141)
83 2qvg_A Two component response 99.7 3.4E-17 1.2E-21 145.8 16.0 120 16-135 6-134 (143)
84 1qkk_A DCTD, C4-dicarboxylate 99.7 2.8E-17 9.4E-22 149.2 15.6 121 16-138 2-123 (155)
85 3eq2_A Probable two-component 99.7 6.7E-18 2.3E-22 178.1 13.0 119 16-136 4-124 (394)
86 3cz5_A Two-component response 99.7 3E-17 1E-21 148.6 14.8 121 16-138 4-127 (153)
87 2jk1_A HUPR, hydrogenase trans 99.7 5.4E-17 1.9E-21 144.6 15.9 117 18-137 2-120 (139)
88 3t8y_A CHEB, chemotaxis respon 99.7 3.9E-17 1.3E-21 150.9 14.9 121 13-135 21-154 (164)
89 1p2f_A Response regulator; DRR 99.7 5.9E-17 2E-21 155.9 16.3 115 18-137 3-118 (220)
90 1ny5_A Transcriptional regulat 99.7 3.5E-17 1.2E-21 174.0 15.6 118 18-137 1-119 (387)
91 3c97_A Signal transduction his 99.7 4.3E-17 1.5E-21 145.5 13.7 116 17-137 10-131 (140)
92 2pln_A HP1043, response regula 99.7 9.3E-17 3.2E-21 142.5 15.5 116 15-136 16-133 (137)
93 1w25_A Stalked-cell differenti 99.7 4.5E-17 1.6E-21 174.5 16.1 118 18-137 2-122 (459)
94 2rdm_A Response regulator rece 99.7 2.1E-16 7.2E-21 138.4 17.4 120 15-137 3-124 (132)
95 2qsj_A DNA-binding response re 99.7 3E-17 1E-21 148.5 11.9 120 17-138 3-126 (154)
96 2j48_A Two-component sensor ki 99.7 4.6E-17 1.6E-21 138.3 11.8 113 17-134 1-116 (119)
97 3eqz_A Response regulator; str 99.7 2.8E-17 9.7E-22 144.3 10.6 118 17-137 3-126 (135)
98 2qv0_A Protein MRKE; structura 99.7 1.8E-16 6.3E-21 141.3 15.9 119 15-137 7-128 (143)
99 2hqr_A Putative transcriptiona 99.7 7.6E-17 2.6E-21 155.4 13.3 114 18-137 1-116 (223)
100 3klo_A Transcriptional regulat 99.7 1.9E-17 6.6E-22 160.6 8.7 121 16-138 6-131 (225)
101 2b4a_A BH3024; flavodoxin-like 99.7 7.8E-17 2.7E-21 143.1 11.9 119 12-136 10-131 (138)
102 3bre_A Probable two-component 99.7 1.3E-16 4.5E-21 164.8 13.1 117 17-135 18-138 (358)
103 1irz_A ARR10-B; helix-turn-hel 99.7 4.3E-17 1.5E-21 130.8 6.9 62 197-258 2-63 (64)
104 3c3w_A Two component transcrip 99.7 3.9E-17 1.3E-21 158.9 7.9 118 18-137 2-122 (225)
105 3sy8_A ROCR; TIM barrel phosph 99.7 1.6E-16 5.6E-21 168.7 13.0 120 17-137 3-129 (400)
106 1qo0_D AMIR; binding protein, 99.7 7.8E-17 2.7E-21 152.6 9.0 115 16-137 11-126 (196)
107 1dc7_A NTRC, nitrogen regulati 99.7 6.6E-18 2.3E-22 145.9 1.3 118 17-136 3-121 (124)
108 3luf_A Two-component system re 99.6 1.4E-15 4.8E-20 152.3 8.9 103 17-123 4-107 (259)
109 2vyc_A Biodegradative arginine 99.6 4.3E-15 1.5E-19 170.7 9.5 119 18-137 1-134 (755)
110 1w25_A Stalked-cell differenti 98.9 2.2E-08 7.4E-13 107.0 18.6 119 15-137 150-271 (459)
111 3cwo_X Beta/alpha-barrel prote 98.9 7E-10 2.4E-14 106.7 4.2 93 42-136 6-101 (237)
112 2ayx_A Sensor kinase protein R 97.1 0.0009 3.1E-08 66.0 7.8 97 15-135 9-105 (254)
113 3n75_A LDC, lysine decarboxyla 96.8 0.0031 1.1E-07 72.2 9.6 103 29-135 18-122 (715)
114 3sft_A CHEB, chemotaxis respon 95.9 0.00069 2.4E-08 65.6 -2.1 68 217-286 9-86 (193)
115 1chd_A CHEB methylesterase; ch 95.7 0.0012 4.1E-08 64.4 -1.1 68 217-286 12-88 (203)
116 3q7r_A Transcriptional regulat 95.4 0.035 1.2E-06 48.3 7.1 101 19-136 14-118 (121)
117 3cwo_X Beta/alpha-barrel prote 95.3 0.075 2.6E-06 50.2 9.9 81 49-130 131-220 (237)
118 2yxb_A Coenzyme B12-dependent 94.4 0.67 2.3E-05 42.9 13.5 119 16-137 17-146 (161)
119 3q58_A N-acetylmannosamine-6-p 89.9 1.3 4.5E-05 43.4 9.7 99 17-119 101-210 (229)
120 1wv2_A Thiazole moeity, thiazo 89.4 1.7 5.9E-05 43.7 10.1 99 32-134 126-236 (265)
121 3fkq_A NTRC-like two-domain pr 88.6 3.7 0.00013 42.5 12.5 113 7-134 11-126 (373)
122 3igs_A N-acetylmannosamine-6-p 87.3 2.3 7.9E-05 41.6 9.5 99 17-119 101-210 (232)
123 1ccw_A Protein (glutamate muta 82.5 12 0.00039 33.4 11.1 112 19-133 5-133 (137)
124 2htm_A Thiazole biosynthesis p 81.0 4.8 0.00016 40.6 8.6 98 34-135 117-228 (268)
125 4fo4_A Inosine 5'-monophosphat 78.3 14 0.00049 38.6 11.7 99 16-118 119-239 (366)
126 2i2x_B MTAC, methyltransferase 77.5 23 0.00079 34.8 12.4 112 15-134 121-242 (258)
127 3ffs_A Inosine-5-monophosphate 76.4 14 0.00048 39.2 11.1 99 17-118 156-274 (400)
128 3f4w_A Putative hexulose 6 pho 74.6 30 0.001 32.2 12.0 113 17-132 77-205 (211)
129 1req_A Methylmalonyl-COA mutas 74.6 19 0.00065 41.1 12.1 117 17-136 596-723 (727)
130 3qja_A IGPS, indole-3-glycerol 74.3 26 0.00089 35.0 11.9 88 28-119 149-242 (272)
131 3o63_A Probable thiamine-phosp 72.4 24 0.00083 34.7 11.0 69 46-118 141-218 (243)
132 1y80_A Predicted cobalamin bin 72.4 17 0.00059 34.3 9.7 98 17-119 88-197 (210)
133 3khj_A Inosine-5-monophosphate 71.6 17 0.0006 37.8 10.2 99 17-118 117-235 (361)
134 1yad_A Regulatory protein TENI 70.3 18 0.00063 34.2 9.4 74 41-118 110-191 (221)
135 3ezx_A MMCP 1, monomethylamine 69.9 8.6 0.00029 37.1 6.9 99 16-119 91-203 (215)
136 2xij_A Methylmalonyl-COA mutas 69.8 25 0.00085 40.4 11.6 118 17-137 604-732 (762)
137 1geq_A Tryptophan synthase alp 69.7 8.3 0.00028 37.2 6.8 50 78-127 68-123 (248)
138 1xi3_A Thiamine phosphate pyro 68.4 32 0.0011 31.9 10.5 69 46-118 114-189 (215)
139 1xrs_B D-lysine 5,6-aminomutas 68.3 31 0.0011 34.5 10.8 114 17-135 120-257 (262)
140 3usb_A Inosine-5'-monophosphat 66.8 35 0.0012 37.2 11.7 101 16-119 267-388 (511)
141 3kp1_A D-ornithine aminomutase 65.0 21 0.00073 40.3 9.5 115 17-136 602-735 (763)
142 2q5c_A NTRC family transcripti 64.7 72 0.0025 30.0 12.2 55 15-69 2-57 (196)
143 3r2g_A Inosine 5'-monophosphat 64.7 69 0.0024 33.4 13.0 97 17-118 112-227 (361)
144 2bfw_A GLGA glycogen synthase; 64.3 47 0.0016 29.6 10.5 106 17-135 70-179 (200)
145 2ekc_A AQ_1548, tryptophan syn 62.5 18 0.00061 35.7 7.8 71 63-133 44-143 (262)
146 1r8j_A KAIA; circadian clock p 62.0 51 0.0017 33.3 10.7 120 15-137 7-130 (289)
147 1qop_A Tryptophan synthase alp 61.2 16 0.00055 36.2 7.1 71 63-133 44-143 (268)
148 2gjl_A Hypothetical protein PA 61.2 64 0.0022 32.5 11.9 81 35-118 112-200 (328)
149 4avf_A Inosine-5'-monophosphat 60.5 50 0.0017 35.7 11.4 99 17-119 241-361 (490)
150 3vnd_A TSA, tryptophan synthas 59.5 14 0.00049 36.9 6.4 80 52-133 36-144 (267)
151 1jcn_A Inosine monophosphate d 59.2 54 0.0019 35.4 11.5 92 27-121 281-390 (514)
152 2c6q_A GMP reductase 2; TIM ba 58.5 61 0.0021 33.5 11.2 101 17-121 132-255 (351)
153 2d00_A V-type ATP synthase sub 58.1 77 0.0026 27.2 10.1 78 16-99 2-81 (109)
154 3bo9_A Putative nitroalkan dio 57.1 51 0.0017 33.5 10.3 81 35-118 118-204 (326)
155 3fro_A GLGA glycogen synthase; 56.7 1.2E+02 0.0041 30.2 13.0 107 17-135 285-394 (439)
156 1xm3_A Thiazole biosynthesis p 55.1 31 0.0011 34.0 8.1 87 29-119 115-207 (264)
157 2gek_A Phosphatidylinositol ma 55.1 34 0.0012 34.1 8.5 108 17-136 240-349 (406)
158 1eep_A Inosine 5'-monophosphat 54.9 47 0.0016 34.7 9.8 89 27-118 179-284 (404)
159 3bw2_A 2-nitropropane dioxygen 54.3 82 0.0028 32.3 11.4 77 39-118 143-236 (369)
160 3rht_A (gatase1)-like protein; 54.1 5 0.00017 40.2 2.0 75 18-98 5-87 (259)
161 3c48_A Predicted glycosyltrans 53.4 87 0.003 31.6 11.4 108 17-135 276-390 (438)
162 3okp_A GDP-mannose-dependent a 53.3 63 0.0022 31.9 10.1 74 51-135 264-343 (394)
163 1geq_A Tryptophan synthase alp 52.3 16 0.00054 35.2 5.3 84 32-119 124-220 (248)
164 4fxs_A Inosine-5'-monophosphat 51.7 85 0.0029 33.9 11.4 99 17-119 243-363 (496)
165 2w6r_A Imidazole glycerol phos 51.5 52 0.0018 31.8 8.9 67 50-119 158-229 (266)
166 1ka9_F Imidazole glycerol phos 51.2 82 0.0028 30.0 10.2 77 51-129 155-241 (252)
167 2v82_A 2-dehydro-3-deoxy-6-pho 51.0 28 0.00095 32.6 6.6 77 35-118 95-175 (212)
168 2oo3_A Protein involved in cat 50.9 13 0.00044 37.7 4.4 69 17-85 113-182 (283)
169 2lci_A Protein OR36; structura 50.7 40 0.0014 28.8 6.7 27 19-45 53-79 (134)
170 1rzu_A Glycogen synthase 1; gl 50.7 84 0.0029 32.4 10.9 107 17-134 320-438 (485)
171 1y0e_A Putative N-acetylmannos 50.4 51 0.0017 30.9 8.5 87 30-119 107-204 (223)
172 2f9f_A First mannosyl transfer 49.7 1.4E+02 0.0047 26.4 11.6 76 49-136 87-162 (177)
173 2tps_A Protein (thiamin phosph 49.4 50 0.0017 30.9 8.2 68 47-118 123-199 (227)
174 1ep3_A Dihydroorotate dehydrog 49.4 71 0.0024 31.5 9.7 106 27-134 150-291 (311)
175 1ypf_A GMP reductase; GUAC, pu 48.9 1.9E+02 0.0064 29.3 13.0 100 18-121 121-242 (336)
176 4dzz_A Plasmid partitioning pr 48.9 22 0.00074 32.4 5.4 53 16-71 29-83 (206)
177 2l2q_A PTS system, cellobiose- 48.8 19 0.00065 30.7 4.6 78 15-98 2-84 (109)
178 4e38_A Keto-hydroxyglutarate-a 48.4 35 0.0012 33.5 7.0 96 33-131 27-124 (232)
179 2qzs_A Glycogen synthase; glyc 47.3 94 0.0032 32.1 10.7 107 17-134 321-439 (485)
180 3lab_A Putative KDPG (2-keto-3 47.3 54 0.0019 31.9 8.1 86 44-132 18-104 (217)
181 3ovp_A Ribulose-phosphate 3-ep 46.6 55 0.0019 31.7 8.1 54 64-118 135-196 (228)
182 2hzd_A Transcriptional enhance 46.3 21 0.00073 29.7 4.2 21 201-221 5-25 (82)
183 4adt_A Pyridoxine biosynthetic 45.9 1.2E+02 0.0043 30.6 10.9 56 79-134 196-258 (297)
184 1thf_D HISF protein; thermophI 45.9 1E+02 0.0035 29.3 10.0 78 50-129 153-240 (253)
185 3fwz_A Inner membrane protein 45.8 81 0.0028 27.2 8.5 92 17-118 30-124 (140)
186 2l69_A Rossmann 2X3 fold prote 45.5 1.2E+02 0.0041 25.8 8.9 43 17-59 2-44 (134)
187 2z6i_A Trans-2-enoyl-ACP reduc 45.5 70 0.0024 32.4 9.1 79 37-118 106-190 (332)
188 3tsm_A IGPS, indole-3-glycerol 45.4 79 0.0027 31.6 9.2 86 29-118 157-248 (272)
189 1v4v_A UDP-N-acetylglucosamine 45.1 1.8E+02 0.0061 28.7 12.0 100 18-135 231-333 (376)
190 4fyk_A Deoxyribonucleoside 5'- 44.7 95 0.0033 28.4 8.9 103 26-136 17-142 (152)
191 3qhp_A Type 1 capsular polysac 44.4 1.5E+02 0.0051 25.4 10.3 106 17-136 32-140 (166)
192 3nav_A Tryptophan synthase alp 44.2 22 0.00075 35.7 4.9 53 79-131 85-144 (271)
193 3l4e_A Uncharacterized peptida 44.1 94 0.0032 29.5 9.2 62 16-85 26-97 (206)
194 1h5y_A HISF; histidine biosynt 43.7 95 0.0033 29.1 9.3 78 50-129 156-243 (253)
195 2w6r_A Imidazole glycerol phos 43.7 62 0.0021 31.2 8.0 69 49-119 31-103 (266)
196 2iw1_A Lipopolysaccharide core 41.9 80 0.0027 30.9 8.7 105 18-135 229-336 (374)
197 1rd5_A Tryptophan synthase alp 41.9 33 0.0011 33.4 5.8 69 63-132 45-138 (262)
198 3duw_A OMT, O-methyltransferas 40.9 1.1E+02 0.0037 28.1 9.0 67 17-85 83-153 (223)
199 1vrd_A Inosine-5'-monophosphat 40.7 1.5E+02 0.0052 31.5 11.3 88 28-118 264-368 (494)
200 3c3y_A Pfomt, O-methyltransfer 40.6 1.1E+02 0.0038 28.9 9.2 56 17-72 95-156 (237)
201 3beo_A UDP-N-acetylglucosamine 40.5 1.9E+02 0.0066 28.2 11.4 59 64-135 283-341 (375)
202 3bul_A Methionine synthase; tr 40.3 1.1E+02 0.0036 34.1 10.0 102 17-120 98-212 (579)
203 3rc1_A Sugar 3-ketoreductase; 40.1 2.8E+02 0.0097 27.8 12.7 107 15-135 25-138 (350)
204 1yxy_A Putative N-acetylmannos 40.0 98 0.0033 29.2 8.7 85 30-119 121-215 (234)
205 3qz6_A HPCH/HPAI aldolase; str 39.5 1.6E+02 0.0053 29.0 10.3 99 33-133 6-110 (261)
206 3kts_A Glycerol uptake operon 39.2 37 0.0013 32.4 5.4 62 51-118 117-178 (192)
207 1ka9_F Imidazole glycerol phos 38.7 1.1E+02 0.0036 29.2 8.8 69 49-119 32-104 (252)
208 1qdl_B Protein (anthranilate s 37.4 17 0.00058 33.9 2.7 76 18-97 1-84 (195)
209 1h5y_A HISF; histidine biosynt 37.4 1.1E+02 0.0037 28.7 8.5 68 49-118 34-105 (253)
210 1vgv_A UDP-N-acetylglucosamine 37.1 1.4E+02 0.0047 29.5 9.6 42 89-135 300-341 (384)
211 1viz_A PCRB protein homolog; s 37.1 58 0.002 32.0 6.6 59 51-119 23-84 (240)
212 2r60_A Glycosyl transferase, g 37.1 2.8E+02 0.0095 28.6 12.4 99 30-135 321-423 (499)
213 1rd5_A Tryptophan synthase alp 36.9 45 0.0015 32.4 5.8 42 78-119 189-230 (262)
214 2f6u_A GGGPS, (S)-3-O-geranylg 36.9 31 0.0011 33.9 4.6 59 51-119 23-84 (234)
215 1tqj_A Ribulose-phosphate 3-ep 36.7 48 0.0016 32.0 5.9 81 50-133 19-108 (230)
216 2fli_A Ribulose-phosphate 3-ep 36.6 49 0.0017 30.9 5.9 55 63-118 131-197 (220)
217 3ajx_A 3-hexulose-6-phosphate 36.2 27 0.00091 32.5 3.8 81 49-131 11-97 (207)
218 3dr5_A Putative O-methyltransf 35.7 57 0.002 30.8 6.2 66 16-85 80-149 (221)
219 2jjm_A Glycosyl transferase, g 35.6 1E+02 0.0035 30.7 8.5 65 64-135 285-349 (394)
220 1vzw_A Phosphoribosyl isomeras 35.2 1.3E+02 0.0046 28.4 8.8 78 49-128 147-237 (244)
221 1qv9_A F420-dependent methylen 34.5 90 0.0031 31.1 7.3 77 41-120 32-120 (283)
222 2xci_A KDO-transferase, 3-deox 34.5 70 0.0024 32.6 7.1 111 17-136 225-346 (374)
223 1wa3_A 2-keto-3-deoxy-6-phosph 34.3 1.6E+02 0.0055 27.0 9.0 92 36-130 6-100 (205)
224 1qpo_A Quinolinate acid phosph 34.1 1.2E+02 0.004 30.6 8.4 94 19-117 167-267 (284)
225 3jy6_A Transcriptional regulat 34.0 1.6E+02 0.0054 27.7 9.1 63 29-98 25-93 (276)
226 3w01_A Heptaprenylglyceryl pho 33.8 47 0.0016 32.7 5.3 59 52-119 27-87 (235)
227 1qop_A Tryptophan synthase alp 33.6 97 0.0033 30.4 7.7 41 79-119 194-234 (268)
228 4e5v_A Putative THUA-like prot 33.6 28 0.00096 34.9 3.7 77 16-97 3-93 (281)
229 3cbg_A O-methyltransferase; cy 33.5 1.4E+02 0.0046 28.1 8.5 56 17-72 97-157 (232)
230 2y88_A Phosphoribosyl isomeras 33.4 91 0.0031 29.5 7.3 77 50-128 151-240 (244)
231 3tsa_A SPNG, NDP-rhamnosyltran 33.3 75 0.0026 31.7 7.0 72 17-96 1-141 (391)
232 1thf_D HISF protein; thermophI 33.3 1.6E+02 0.0054 27.9 9.0 69 49-119 31-103 (253)
233 3f4w_A Putative hexulose 6 pho 32.9 41 0.0014 31.3 4.6 72 49-122 11-87 (211)
234 1sui_A Caffeoyl-COA O-methyltr 32.9 1.3E+02 0.0044 28.8 8.3 67 17-85 104-176 (247)
235 3ceu_A Thiamine phosphate pyro 32.7 55 0.0019 30.8 5.5 68 46-118 94-171 (210)
236 1z0s_A Probable inorganic poly 32.7 16 0.00056 36.8 1.8 102 8-135 17-122 (278)
237 2x6q_A Trehalose-synthase TRET 32.5 3.8E+02 0.013 26.6 12.3 63 64-135 316-378 (416)
238 2v5j_A 2,4-dihydroxyhept-2-ENE 32.5 3.2E+02 0.011 27.1 11.4 97 33-132 30-132 (287)
239 3tdn_A FLR symmetric alpha-bet 32.1 99 0.0034 29.6 7.4 68 49-118 36-107 (247)
240 3tr6_A O-methyltransferase; ce 32.1 1.5E+02 0.0053 27.0 8.5 57 16-72 88-149 (225)
241 2avd_A Catechol-O-methyltransf 32.1 1.5E+02 0.0052 27.1 8.5 67 17-85 94-165 (229)
242 2xxa_A Signal recognition part 32.1 69 0.0023 34.0 6.7 53 17-71 129-191 (433)
243 3l9w_A Glutathione-regulated p 31.8 85 0.0029 33.0 7.3 93 16-118 26-121 (413)
244 2iuy_A Avigt4, glycosyltransfe 31.5 58 0.002 31.8 5.7 53 76-135 253-307 (342)
245 2pjk_A 178AA long hypothetical 31.3 64 0.0022 30.0 5.6 25 2-26 2-26 (178)
246 4gud_A Imidazole glycerol phos 31.1 50 0.0017 30.7 4.9 43 19-69 4-46 (211)
247 1p0k_A Isopentenyl-diphosphate 31.1 3.1E+02 0.011 27.6 11.3 88 29-119 166-280 (349)
248 2fhp_A Methylase, putative; al 30.5 2.5E+02 0.0084 24.5 9.3 68 18-85 68-138 (187)
249 1h1y_A D-ribulose-5-phosphate 30.4 41 0.0014 32.1 4.2 82 36-118 108-200 (228)
250 3s5p_A Ribose 5-phosphate isom 30.1 3.4E+02 0.012 25.2 11.1 36 13-48 17-54 (166)
251 3llv_A Exopolyphosphatase-rela 30.0 2E+02 0.0067 24.4 8.3 50 64-117 71-121 (141)
252 3iwp_A Copper homeostasis prot 30.0 1.1E+02 0.0037 31.0 7.3 84 46-132 45-150 (287)
253 2khz_A C-MYC-responsive protei 29.9 1.2E+02 0.004 27.7 7.0 114 15-136 9-151 (165)
254 2pyy_A Ionotropic glutamate re 29.5 1.3E+02 0.0045 26.6 7.4 50 15-71 110-159 (228)
255 2vws_A YFAU, 2-keto-3-deoxy su 29.0 4.1E+02 0.014 25.9 11.6 97 33-132 9-111 (267)
256 3e8x_A Putative NAD-dependent 29.0 54 0.0019 30.5 4.7 59 12-72 16-75 (236)
257 2px0_A Flagellar biosynthesis 28.9 1.2E+02 0.0042 30.1 7.6 59 16-77 133-194 (296)
258 1g5t_A COB(I)alamin adenosyltr 28.7 1.2E+02 0.0043 28.7 7.2 58 51-108 106-170 (196)
259 3u3x_A Oxidoreductase; structu 28.5 1.4E+02 0.0048 30.3 8.1 107 16-134 25-136 (361)
260 1rpx_A Protein (ribulose-phosp 28.0 36 0.0012 32.3 3.3 55 63-118 140-206 (230)
261 3ffs_A Inosine-5-monophosphate 28.0 1E+02 0.0035 32.6 7.0 65 51-118 146-211 (400)
262 3tfw_A Putative O-methyltransf 27.8 3.1E+02 0.011 25.8 10.1 78 17-97 88-169 (248)
263 1tqx_A D-ribulose-5-phosphate 27.7 85 0.0029 30.4 6.0 82 36-119 109-201 (227)
264 4fxs_A Inosine-5'-monophosphat 27.6 1E+02 0.0035 33.3 7.1 64 52-118 234-299 (496)
265 3k9c_A Transcriptional regulat 27.4 1.1E+02 0.0039 29.1 6.9 64 29-99 29-97 (289)
266 3ec7_A Putative dehydrogenase; 27.3 2.5E+02 0.0087 28.2 9.8 109 16-135 22-136 (357)
267 2qfm_A Spermine synthase; sper 27.0 1.3E+02 0.0043 31.5 7.4 56 18-73 212-277 (364)
268 4af0_A Inosine-5'-monophosphat 27.0 70 0.0024 35.4 5.6 63 52-117 284-348 (556)
269 3ic5_A Putative saccharopine d 26.9 1.4E+02 0.0047 24.0 6.4 54 16-72 4-58 (118)
270 2zxj_A Transcriptional regulat 26.8 7.8 0.00027 34.1 -1.6 73 170-261 15-87 (120)
271 3vk5_A MOEO5; TIM barrel, tran 26.7 82 0.0028 31.9 5.7 56 64-120 200-257 (286)
272 3iwt_A 178AA long hypothetical 26.5 1.2E+02 0.004 27.7 6.5 43 29-71 41-89 (178)
273 4fzr_A SSFS6; structural genom 26.4 1.4E+02 0.0048 29.9 7.7 73 17-97 15-151 (398)
274 3qk7_A Transcriptional regulat 26.2 1.8E+02 0.0061 27.7 8.1 64 29-98 28-96 (294)
275 3kke_A LACI family transcripti 26.1 1.5E+02 0.0052 28.4 7.6 66 28-99 32-103 (303)
276 2al1_A Enolase 1, 2-phospho-D- 25.9 83 0.0028 33.5 5.9 97 24-123 219-349 (436)
277 2hnk_A SAM-dependent O-methylt 25.9 2.7E+02 0.0094 25.8 9.2 57 17-73 85-157 (239)
278 3inp_A D-ribulose-phosphate 3- 25.8 1.1E+02 0.0036 30.2 6.3 82 50-133 42-130 (246)
279 1qo2_A Molecule: N-((5-phospho 25.7 93 0.0032 29.6 5.8 77 49-128 145-238 (241)
280 1wa3_A 2-keto-3-deoxy-6-phosph 25.7 1E+02 0.0035 28.4 6.0 64 49-118 113-177 (205)
281 1ujp_A Tryptophan synthase alp 25.6 1.2E+02 0.004 30.2 6.7 85 30-119 133-229 (271)
282 1zh8_A Oxidoreductase; TM0312, 25.6 3.9E+02 0.013 26.6 10.8 109 15-135 16-131 (340)
283 3s83_A Ggdef family protein; s 25.6 2E+02 0.0067 27.4 8.2 115 15-132 122-254 (259)
284 3u81_A Catechol O-methyltransf 25.4 1.1E+02 0.0036 28.4 6.0 59 16-74 82-145 (221)
285 3oy2_A Glycosyltransferase B73 25.4 2.4E+02 0.0082 28.1 9.2 107 17-135 215-354 (413)
286 1me8_A Inosine-5'-monophosphat 25.4 2.3E+02 0.0077 30.5 9.4 71 45-119 290-381 (503)
287 1o4u_A Type II quinolic acid p 25.3 1.9E+02 0.0065 29.0 8.2 93 20-117 166-266 (285)
288 1gox_A (S)-2-hydroxy-acid oxid 25.2 2E+02 0.0067 29.7 8.6 86 30-118 214-308 (370)
289 3o07_A Pyridoxine biosynthesis 25.2 81 0.0028 32.0 5.3 59 78-136 186-251 (291)
290 3khj_A Inosine-5-monophosphate 25.1 2.6E+02 0.0088 28.9 9.4 65 51-118 107-172 (361)
291 3ot5_A UDP-N-acetylglucosamine 25.0 4.5E+02 0.015 26.9 11.4 42 89-135 319-360 (403)
292 2iuy_A Avigt4, glycosyltransfe 24.9 1.5E+02 0.0052 28.7 7.4 56 17-74 3-95 (342)
293 2fpo_A Methylase YHHF; structu 24.9 2.5E+02 0.0085 25.6 8.5 66 18-86 78-145 (202)
294 3c6k_A Spermine synthase; sper 24.7 1.6E+02 0.0054 31.0 7.7 57 18-74 229-295 (381)
295 1q6o_A Humps, 3-keto-L-gulonat 24.7 2.7E+02 0.0093 25.9 8.8 85 31-118 96-190 (216)
296 3axs_A Probable N(2),N(2)-dime 24.4 2.7E+02 0.0092 29.1 9.5 77 18-99 78-159 (392)
297 1wl8_A GMP synthase [glutamine 24.3 60 0.002 29.7 4.0 76 18-97 1-79 (189)
298 1lst_A Lysine, arginine, ornit 24.3 1.7E+02 0.0059 26.2 7.2 54 15-71 109-162 (239)
299 3dqp_A Oxidoreductase YLBE; al 24.2 2.3E+02 0.0078 25.7 8.1 30 18-47 1-30 (219)
300 3nav_A Tryptophan synthase alp 24.2 1.5E+02 0.0053 29.4 7.2 96 21-119 130-237 (271)
301 3btv_A Galactose/lactose metab 24.2 2.1E+02 0.0072 29.9 8.7 108 16-134 19-143 (438)
302 2yum_A ZZZ3 protein, zinc fing 23.9 1.2E+02 0.004 23.8 5.2 46 203-250 9-57 (75)
303 3fro_A GLGA glycogen synthase; 23.8 2.3E+02 0.0077 28.2 8.6 32 17-48 2-42 (439)
304 4gmf_A Yersiniabactin biosynth 23.7 90 0.0031 32.4 5.6 34 102-135 84-117 (372)
305 3sgz_A Hydroxyacid oxidase 2; 23.7 2.3E+02 0.008 29.3 8.7 85 31-118 207-300 (352)
306 4hkt_A Inositol 2-dehydrogenas 23.6 5.3E+02 0.018 25.3 11.3 105 17-135 3-112 (331)
307 3vzx_A Heptaprenylglyceryl pho 23.6 70 0.0024 31.2 4.5 59 52-119 22-82 (228)
308 1jvn_A Glutamine, bifunctional 23.6 3.2E+02 0.011 29.8 10.3 78 51-130 455-543 (555)
309 3cvo_A Methyltransferase-like 23.6 76 0.0026 30.3 4.6 26 17-42 51-76 (202)
310 3dbi_A Sugar-binding transcrip 23.5 4E+02 0.014 25.8 10.2 68 27-99 79-152 (338)
311 1i1q_B Anthranilate synthase c 23.3 80 0.0027 29.0 4.7 77 18-97 1-83 (192)
312 2akz_A Gamma enolase, neural; 23.2 96 0.0033 33.0 5.8 101 24-127 217-350 (439)
313 1req_B Methylmalonyl-COA mutas 23.0 98 0.0033 34.8 6.0 96 31-131 528-630 (637)
314 2ho3_A Oxidoreductase, GFO/IDH 23.0 5.4E+02 0.018 25.1 11.2 103 18-133 2-109 (325)
315 1jmv_A USPA, universal stress 22.9 3.2E+02 0.011 22.6 8.5 68 29-98 65-138 (141)
316 3k4h_A Putative transcriptiona 22.9 1.8E+02 0.0063 27.3 7.4 66 28-99 30-101 (292)
317 3gnn_A Nicotinate-nucleotide p 22.8 3.7E+02 0.013 27.2 9.8 66 44-116 213-278 (298)
318 3euw_A MYO-inositol dehydrogen 22.7 5.6E+02 0.019 25.2 11.9 104 17-133 4-112 (344)
319 3hp4_A GDSL-esterase; psychrot 22.6 1.3E+02 0.0046 26.2 5.9 57 17-73 2-76 (185)
320 3lp8_A Phosphoribosylamine-gly 22.5 1.6E+02 0.0055 30.9 7.4 58 12-71 16-91 (442)
321 3bbl_A Regulatory protein of L 22.4 2.8E+02 0.0097 26.1 8.7 65 28-98 25-95 (287)
322 3tha_A Tryptophan synthase alp 22.4 46 0.0016 33.1 2.9 55 79-136 79-139 (252)
323 4avf_A Inosine-5'-monophosphat 22.3 1.6E+02 0.0056 31.6 7.5 65 51-118 231-297 (490)
324 2gl5_A Putative dehydratase pr 22.2 2.1E+02 0.0073 29.5 8.2 79 49-129 230-309 (410)
325 2i1o_A Nicotinate phosphoribos 22.2 4.3E+02 0.015 27.6 10.5 85 30-116 197-295 (398)
326 3ajd_A Putative methyltransfer 22.1 3E+02 0.01 26.5 8.9 54 18-71 109-164 (274)
327 3c3k_A Alanine racemase; struc 22.1 2.2E+02 0.0076 26.9 7.8 63 29-98 26-94 (285)
328 3ajx_A 3-hexulose-6-phosphate 22.1 2.7E+02 0.0094 25.3 8.2 86 29-118 91-185 (207)
329 4af0_A Inosine-5'-monophosphat 22.1 5.6E+02 0.019 28.2 11.6 101 16-119 292-413 (556)
330 3brq_A HTH-type transcriptiona 21.9 3E+02 0.01 25.7 8.7 66 28-98 38-109 (296)
331 3cni_A Putative ABC type-2 tra 21.9 1.5E+02 0.0051 26.2 6.0 53 14-69 7-61 (156)
332 2igt_A SAM dependent methyltra 21.9 1.9E+02 0.0063 29.3 7.5 55 17-71 175-233 (332)
333 3oti_A CALG3; calicheamicin, T 21.8 2.6E+02 0.0088 28.0 8.6 34 16-49 19-56 (398)
334 1wxx_A TT1595, hypothetical pr 21.7 2.7E+02 0.0091 28.4 8.7 54 18-71 232-287 (382)
335 3sr7_A Isopentenyl-diphosphate 21.6 4.7E+02 0.016 27.0 10.6 87 28-118 193-306 (365)
336 3c0k_A UPF0064 protein YCCW; P 21.6 2.4E+02 0.008 28.9 8.3 54 18-71 244-301 (396)
337 1jub_A Dihydroorotate dehydrog 21.4 2.5E+02 0.0086 27.6 8.3 57 63-119 119-192 (311)
338 2l69_A Rossmann 2X3 fold prote 21.1 2.8E+02 0.0097 23.5 7.1 33 20-52 80-112 (134)
339 1vc4_A Indole-3-glycerol phosp 21.1 1.3E+02 0.0043 29.6 5.8 85 31-119 141-236 (254)
340 2fep_A Catabolite control prot 21.0 3.3E+02 0.011 25.7 8.8 64 29-98 34-103 (289)
341 1ujp_A Tryptophan synthase alp 20.9 54 0.0018 32.6 3.1 54 79-132 80-139 (271)
342 3tb6_A Arabinose metabolism tr 20.8 3.4E+02 0.012 25.4 8.8 69 28-99 32-108 (298)
343 2nli_A Lactate oxidase; flavoe 20.8 3.9E+02 0.013 27.5 9.8 90 29-121 217-316 (368)
344 3h2s_A Putative NADH-flavin re 20.7 1.2E+02 0.0042 27.5 5.4 56 18-75 1-56 (224)
345 3fdx_A Putative filament prote 20.6 3E+02 0.01 22.7 7.6 67 29-96 67-142 (143)
346 2gjl_A Hypothetical protein PA 20.5 5.3E+02 0.018 25.6 10.6 61 50-119 85-145 (328)
347 3e3m_A Transcriptional regulat 20.4 2.8E+02 0.0097 27.2 8.5 63 29-97 88-156 (355)
348 2cu0_A Inosine-5'-monophosphat 20.4 2.3E+02 0.0079 30.2 8.2 43 79-121 317-360 (486)
349 2rgy_A Transcriptional regulat 20.3 1.9E+02 0.0066 27.4 7.0 64 29-98 26-98 (290)
350 2p10_A MLL9387 protein; putati 20.0 3.9E+02 0.013 27.0 9.1 77 38-119 160-259 (286)
No 1
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=99.92 E-value=7.7e-25 Score=200.99 Aligned_cols=122 Identities=25% Similarity=0.562 Sum_probs=111.8
Q ss_pred CCCCCCEEEEEeCCHHHHHHHHHHHHhCCCe-EEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc---
Q 007940 13 FNPAGLRVLVVDDDLAWLKILEKMLKKCSYE-VTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLE--- 88 (584)
Q Consensus 13 f~p~gmrVLIVDDd~~~r~~L~~lL~~~gy~-V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~--- 88 (584)
...+++|||||||++..|..++.+|+..||. |.+|.+|.+|++.+++.. ||+||+|++||+|||++++++||..
T Consensus 8 ~m~k~~rILiVDD~~~~r~~l~~~L~~~G~~~v~~a~~g~~al~~~~~~~--~DlillD~~MP~mdG~el~~~ir~~~~~ 85 (134)
T 3to5_A 8 ILNKNMKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLKKGD--FDFVVTDWNMPGMQGIDLLKNIRADEEL 85 (134)
T ss_dssp -CCTTCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHC--CSEEEEESCCSSSCHHHHHHHHHHSTTT
T ss_pred HhCCCCEEEEEeCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHHhCC--CCEEEEcCCCCCCCHHHHHHHHHhCCCC
Confidence 3467899999999999999999999999986 668999999999998865 9999999999999999999999753
Q ss_pred CCCCEEEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 007940 89 MDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 136 (584)
Q Consensus 89 ~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrr 136 (584)
+++|||++|+..+.+...+++++||+|||.|||+..+|..+++++++|
T Consensus 86 ~~ipvI~lTa~~~~~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~~l~R 133 (134)
T 3to5_A 86 KHLPVLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLDKIFER 133 (134)
T ss_dssp TTCCEEEEESSCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHCC-
T ss_pred CCCeEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 579999999999999999999999999999999999999999988754
No 2
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=99.86 E-value=7.9e-21 Score=166.05 Aligned_cols=118 Identities=30% Similarity=0.499 Sum_probs=110.6
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCCEEEE
Q 007940 17 GLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMM 96 (584)
Q Consensus 17 gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVIvl 96 (584)
+.|||||||++..+..++.+|+..||+|..+.++.+|++.+.+.. ||+||+|+.||+++|+++++.++....+|||++
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlii~D~~~p~~~g~~~~~~lr~~~~~~ii~~ 79 (120)
T 3f6p_A 2 DKKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQ--PDLILLDIMLPNKDGVEVCREVRKKYDMPIIML 79 (120)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTC--CSEEEEETTSTTTHHHHHHHHHHTTCCSCEEEE
T ss_pred CCeEEEEECCHHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHhhCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEE
Confidence 359999999999999999999999999999999999999998754 999999999999999999999987778999999
Q ss_pred EcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 007940 97 SVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 136 (584)
Q Consensus 97 Sa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrr 136 (584)
|+..+.....++++.||++||.||++.++|..++++++++
T Consensus 80 t~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~l~~ 119 (120)
T 3f6p_A 80 TAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRR 119 (120)
T ss_dssp EESSCHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTC
T ss_pred ECCCChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999988754
No 3
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=99.86 E-value=1.1e-20 Score=165.77 Aligned_cols=116 Identities=29% Similarity=0.417 Sum_probs=108.5
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc---CCCCEE
Q 007940 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLE---MDLPVI 94 (584)
Q Consensus 18 mrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~---~~iPVI 94 (584)
.+||||||++..+..++.+|+..||+|..+.++.+|++.+.... ||+||+|+.||+++|++++++++.. +.+|||
T Consensus 3 ~~ILivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~al~~l~~~~--~dlvllD~~~p~~~g~~~~~~l~~~~~~~~~pii 80 (122)
T 3gl9_A 3 KKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSEFT--PDLIVLXIMMPVMDGFTVLKKLQEKEEWKRIPVI 80 (122)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTBC--CSEEEECSCCSSSCHHHHHHHHHTSTTTTTSCEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhcC--CCEEEEeccCCCCcHHHHHHHHHhcccccCCCEE
Confidence 58999999999999999999999999999999999999998754 9999999999999999999999754 578999
Q ss_pred EEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHH
Q 007940 95 MMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFR 135 (584)
Q Consensus 95 vlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlr 135 (584)
++|+..+.....++++.||++||.||++.++|..+++++++
T Consensus 81 ~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 121 (122)
T 3gl9_A 81 VLTAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHLLN 121 (122)
T ss_dssp EEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC
T ss_pred EEecCCchHHHHHHHhcChhhhccCCCCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999988763
No 4
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=99.85 E-value=6.7e-23 Score=185.70 Aligned_cols=114 Identities=25% Similarity=0.366 Sum_probs=102.2
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCCE
Q 007940 15 PAGLRVLVVDDDLAWLKILEKMLKKCSYEVT-TCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPV 93 (584)
Q Consensus 15 p~gmrVLIVDDd~~~r~~L~~lL~~~gy~V~-~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPV 93 (584)
..++|||||||++.++..++.+|+..||+|+ +|.++.+|++.+++.. ||+||+|++||+|||++++++++. .++||
T Consensus 6 ~r~~rILiVdD~~~~~~~l~~~L~~~G~~v~~~a~~g~eAl~~~~~~~--~DlvllDi~mP~~~G~el~~~lr~-~~ipv 82 (123)
T 2lpm_A 6 ERRLRVLVVEDESMIAMLIEDTLCELGHEVAATASRMQEALDIARKGQ--FDIAIIDVNLDGEPSYPVADILAE-RNVPF 82 (123)
T ss_dssp CCCCCEEEESSSTTTSHHHHHHHHHHCCCCCBCSCCHHHHHHHHHHCC--SSEEEECSSSSSCCSHHHHHHHHH-TCCSS
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCC--CCEEEEecCCCCCCHHHHHHHHHc-CCCCE
Confidence 4678999999999999999999999999986 7899999999998854 999999999999999999999975 57999
Q ss_pred EEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHH
Q 007940 94 IMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVF 134 (584)
Q Consensus 94 IvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vl 134 (584)
|++|++.+... +.++|+++||.|||+.++|..++++++
T Consensus 83 I~lTa~~~~~~---~~~~g~~~yl~KP~~~~~L~~~l~~~~ 120 (123)
T 2lpm_A 83 IFATGYGSKGL---DTRYSNIPLLTKPFLDSELEAVLVQIS 120 (123)
T ss_dssp CCBCTTCTTSC---CSSSCSCSCBCSSSSHHHHHHHHSTTC
T ss_pred EEEecCccHHH---HHhCCCCcEEECCCCHHHHHHHHHHHH
Confidence 99999876543 457899999999999999999887654
No 5
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=99.85 E-value=1.3e-20 Score=186.21 Aligned_cols=121 Identities=32% Similarity=0.518 Sum_probs=113.1
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc-CCCCE
Q 007940 15 PAGLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLE-MDLPV 93 (584)
Q Consensus 15 p~gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~-~~iPV 93 (584)
...++||||||++..+..++.+|+..||+|..+.++.+|++.+.... ||+||+|+.||+++|+++++.|+.. +.+||
T Consensus 21 ~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlvllD~~lp~~~g~~~~~~lr~~~~~~~i 98 (250)
T 3r0j_A 21 TPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETR--PDAVILDVXMPGMDGFGVLRRLRADGIDAPA 98 (250)
T ss_dssp CSSCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHC--CSEEEEESCCSSSCHHHHHHHHHHTTCCCCE
T ss_pred CCCceEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCCCE
Confidence 34689999999999999999999999999999999999999998765 9999999999999999999999754 68999
Q ss_pred EEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHhc
Q 007940 94 IMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 137 (584)
Q Consensus 94 IvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrrk 137 (584)
|++|+..+.....+++++||++||.||++.++|..+++.++++.
T Consensus 99 i~lt~~~~~~~~~~~~~~Ga~~yl~Kp~~~~~L~~~i~~~~~~~ 142 (250)
T 3r0j_A 99 LFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRA 142 (250)
T ss_dssp EEEECSTTHHHHHHHHTSTTCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999998764
No 6
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=99.84 E-value=3.8e-20 Score=165.47 Aligned_cols=120 Identities=31% Similarity=0.523 Sum_probs=111.1
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc---cCCCC
Q 007940 16 AGLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGL---EMDLP 92 (584)
Q Consensus 16 ~gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~---~~~iP 92 (584)
+..+||||||++..+..++.+|+..||.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++. .+.+|
T Consensus 3 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlvl~D~~lp~~~g~~~~~~lr~~~~~~~~p 80 (136)
T 3t6k_A 3 KPHTLLIVDDDDTVAEMLELVLRGAGYEVRRAASGEEALQQIYKNL--PDALICDVLLPGIDGYTLCKRVRQHPLTKTLP 80 (136)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSC--CSEEEEESCCSSSCHHHHHHHHHHSGGGTTCC
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHcCCCcCCcc
Confidence 3579999999999999999999999999999999999999998754 999999999999999999999975 35799
Q ss_pred EEEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHhc
Q 007940 93 VIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 137 (584)
Q Consensus 93 VIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrrk 137 (584)
||++|+..+.....+++++||++||.||++.++|..++++++++.
T Consensus 81 ii~~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~l~~~ 125 (136)
T 3t6k_A 81 ILMLTAQGDISAKIAGFEAGANDYLAKPFEPQELVYRVKNILART 125 (136)
T ss_dssp EEEEECTTCHHHHHHHHHHTCSEEEETTCCHHHHHHHHHHHHHC-
T ss_pred EEEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999988654
No 7
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=99.83 E-value=6.4e-20 Score=163.33 Aligned_cols=119 Identities=20% Similarity=0.425 Sum_probs=106.9
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCC-eEEEECCHHHHHHHHHhc---CCCceEEEEecCCCCCCHHHHHHHHhc--cCC
Q 007940 17 GLRVLVVDDDLAWLKILEKMLKKCSY-EVTTCGLARDALSLLRER---KDGYDIVISDVNMPDMDGFKLLEHVGL--EMD 90 (584)
Q Consensus 17 gmrVLIVDDd~~~r~~L~~lL~~~gy-~V~~a~~~~eAL~~L~~~---~~~pDLVIlDi~MPdmdGlELL~~Ir~--~~~ 90 (584)
.++||||||++..+..++.+|+..|+ .|..+.++.+|++.+... ...||+||+|+.||+++|+++++.++. .+.
T Consensus 2 ~~~ILivdD~~~~~~~l~~~L~~~g~~~v~~~~~~~~al~~~~~~~~~~~~~dlvllD~~mp~~~G~~~~~~lr~~~~~~ 81 (133)
T 2r25_B 2 SVKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQMPKVDGLLSTKMIRRDLGYT 81 (133)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHHHHTCCCSEEEECSCCSSSCHHHHHHHHHHHSCCC
T ss_pred CceEEEEcCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCChHHHHHHHHhhcCCC
Confidence 47899999999999999999999897 478899999999988761 124999999999999999999999975 347
Q ss_pred CCEEEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHH
Q 007940 91 LPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFR 135 (584)
Q Consensus 91 iPVIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlr 135 (584)
+|||++|+..+.....++++.||++||.||++.++|..++++++.
T Consensus 82 ~~ii~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~ 126 (133)
T 2r25_B 82 SPIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTILTEFCA 126 (133)
T ss_dssp SCEEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999988764
No 8
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=99.82 E-value=1.6e-19 Score=159.40 Aligned_cols=120 Identities=27% Similarity=0.545 Sum_probs=108.2
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHHhCCCe-EEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc---CCC
Q 007940 16 AGLRVLVVDDDLAWLKILEKMLKKCSYE-VTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLE---MDL 91 (584)
Q Consensus 16 ~gmrVLIVDDd~~~r~~L~~lL~~~gy~-V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~---~~i 91 (584)
.++|||||||++..+..++.+|+..||. |..+.++.+|++.+... ..||+||+|+.||+++|++++++++.. +.+
T Consensus 4 ~~~~iLivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~~-~~~dlvi~D~~~p~~~g~~~~~~lr~~~~~~~~ 82 (129)
T 3h1g_A 4 GSMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDAN-ADTKVLITDWNMPEMNGLDLVKKVRSDSRFKEI 82 (129)
T ss_dssp --CCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHC-TTCCEEEECSCCSSSCHHHHHHHHHTSTTCTTC
T ss_pred CCcEEEEEeCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHHHhC-CCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCC
Confidence 4689999999999999999999999985 88999999999988764 249999999999999999999999753 578
Q ss_pred CEEEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 007940 92 PVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 136 (584)
Q Consensus 92 PVIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrr 136 (584)
|||++|+..+.....+++++||++||.||++.++|..+++.++.+
T Consensus 83 pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~l~~~l~~ 127 (129)
T 3h1g_A 83 PIIMITAEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVLGT 127 (129)
T ss_dssp CEEEEESCCSHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHCC
T ss_pred eEEEEeCCCChHHHHHHHHcCccEEEeCCCCHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999988743
No 9
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=99.82 E-value=1.8e-19 Score=162.61 Aligned_cols=119 Identities=29% Similarity=0.438 Sum_probs=105.3
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-----cC
Q 007940 15 PAGLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGL-----EM 89 (584)
Q Consensus 15 p~gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~-----~~ 89 (584)
..++|||||||++..+..++.+|+..||.|.++.++.+|++.+.... ||+||+|+.||+++|++++++++. .+
T Consensus 12 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlvl~D~~mp~~~g~~~~~~lr~~~~~~~~ 89 (143)
T 3m6m_D 12 VRSMRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMAEED--YDAVIVDLHMPGMNGLDMLKQLRVMQASGMR 89 (143)
T ss_dssp ---CEEEEECSSHHHHHHHHHHHHC--CEEEEESSHHHHHHHHHHSC--CSEEEEESCCSSSCHHHHHHHHHHHHHTTCC
T ss_pred cccceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHhchhccCC
Confidence 45689999999999999999999999999999999999999998754 999999999999999999999963 24
Q ss_pred CCCEEEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHH
Q 007940 90 DLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFR 135 (584)
Q Consensus 90 ~iPVIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlr 135 (584)
.+|||++|+..+.+...++++.||++||.||+..++|..++.++..
T Consensus 90 ~~pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~l~~~~~ 135 (143)
T 3m6m_D 90 YTPVVVLSADVTPEAIRACEQAGARAFLAKPVVAAKLLDTLADLAV 135 (143)
T ss_dssp CCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHC-
T ss_pred CCeEEEEeCCCCHHHHHHHHHcChhheeeCCCCHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999988754
No 10
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=99.81 E-value=4.4e-19 Score=161.79 Aligned_cols=121 Identities=25% Similarity=0.446 Sum_probs=111.9
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc---CCC
Q 007940 15 PAGLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLE---MDL 91 (584)
Q Consensus 15 p~gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~---~~i 91 (584)
..+++||||||++..+..++.+|+..||.|..+.++.+|++.+.+.. ||+||+|+.||+++|+++++.|+.. +.+
T Consensus 5 ~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~--~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~ 82 (154)
T 3gt7_A 5 NRAGEILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLSLTR--PDLIISDVLMPEMDGYALCRWLKGQPDLRTI 82 (154)
T ss_dssp --CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHTTCC--CSEEEEESCCSSSCHHHHHHHHHHSTTTTTS
T ss_pred cCCCcEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHhCCCcCCC
Confidence 45689999999999999999999999999999999999999998754 9999999999999999999999754 689
Q ss_pred CEEEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHhc
Q 007940 92 PVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 137 (584)
Q Consensus 92 PVIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrrk 137 (584)
|||++|+..+.....++++.||++||.||++..+|..++++++++.
T Consensus 83 pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~ 128 (154)
T 3gt7_A 83 PVILLTILSDPRDVVRSLECGADDFITKPCKDVVLASHVKRLLSGV 128 (154)
T ss_dssp CEEEEECCCSHHHHHHHHHHCCSEEEESSCCHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCChHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998764
No 11
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=99.81 E-value=6.9e-19 Score=152.63 Aligned_cols=118 Identities=19% Similarity=0.391 Sum_probs=109.9
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCCEEEE
Q 007940 17 GLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMM 96 (584)
Q Consensus 17 gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVIvl 96 (584)
..+||||||++..+..++.+|+..||.|..+.++.++++.+.... ||+||+|+.||+++|+++++.++..+.+|||++
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~--~dlvi~d~~l~~~~g~~~~~~l~~~~~~~ii~~ 79 (122)
T 1zgz_A 2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQS--VDLILLDINLPDENGLMLTRALRERSTVGIILV 79 (122)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSC--CSEEEEESCCSSSCHHHHHHHHHTTCCCEEEEE
T ss_pred CcEEEEEECCHHHHHHHHHHHHHCCCeEEEecCHHHHHHHHhcCC--CCEEEEeCCCCCCChHHHHHHHHhcCCCCEEEE
Confidence 358999999999999999999999999999999999999988754 999999999999999999999987778999999
Q ss_pred EcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 007940 97 SVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 136 (584)
Q Consensus 97 Sa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrr 136 (584)
|+..+.....++++.||++||.||++.++|..++++++++
T Consensus 80 s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 119 (122)
T 1zgz_A 80 TGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119 (122)
T ss_dssp ESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred ECCCChhhHHHHHHhCHHHHccCCCCHHHHHHHHHHHHHH
Confidence 9999998899999999999999999999999999988754
No 12
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=99.81 E-value=2.8e-19 Score=159.99 Aligned_cols=121 Identities=21% Similarity=0.285 Sum_probs=110.8
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCC-CCHHHHHHHHhccCCCCEE
Q 007940 16 AGLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPD-MDGFKLLEHVGLEMDLPVI 94 (584)
Q Consensus 16 ~gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPd-mdGlELL~~Ir~~~~iPVI 94 (584)
.+++||||||++..+..++.+|+..||.|..+.++.+|++.+.+. ..||+||+|+.||+ ++|+++++.++..+.+|||
T Consensus 4 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~-~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~ii 82 (140)
T 3h5i_A 4 KDKKILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVSGG-WYPDLILMDIELGEGMDGVQTALAIQQISELPVV 82 (140)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTT-CCCSEEEEESSCSSSCCHHHHHHHHHHHCCCCEE
T ss_pred CCcEEEEEeCCHHHHHHHHHHHHHcCCEEEEecChHHHHHHHhcC-CCCCEEEEeccCCCCCCHHHHHHHHHhCCCCCEE
Confidence 568999999999999999999999999999999999999999762 24999999999995 9999999999877899999
Q ss_pred EEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHhc
Q 007940 95 MMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 137 (584)
Q Consensus 95 vlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrrk 137 (584)
++|+..+.....++++.||++||.||++..+|..++++++++.
T Consensus 83 ~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~ 125 (140)
T 3h5i_A 83 FLTAHTEPAVVEKIRSVTAYGYVMKSATEQVLITIVEMALRLY 125 (140)
T ss_dssp EEESSSSCCCCGGGGGSCEEEEEETTCCHHHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHHHH
Confidence 9999988888899999999999999999999999999998764
No 13
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=99.81 E-value=7.1e-19 Score=152.00 Aligned_cols=117 Identities=27% Similarity=0.447 Sum_probs=109.1
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCCEEEE
Q 007940 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGL-EMDLPVIMM 96 (584)
Q Consensus 18 mrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~-~~~iPVIvl 96 (584)
++||||||++..+..++.+|+..||.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++. .+.+|||++
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~--~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii~~ 78 (121)
T 2pl1_A 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHI--PDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVL 78 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSC--CSEEEECSCCSSSCHHHHHHHHHHTTCCSCEEEE
T ss_pred CeEEEEeCcHHHHHHHHHHHhhcCCEEEEeCCHHHHHHHHhccC--CCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 58999999999999999999999999999999999999998754 999999999999999999999975 368999999
Q ss_pred EcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 007940 97 SVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 136 (584)
Q Consensus 97 Sa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrr 136 (584)
|+..+.....++++.||++|+.||++.++|..++++++++
T Consensus 79 s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 118 (121)
T 2pl1_A 79 TARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR 118 (121)
T ss_dssp ESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred ecCCCHHHHHHHHHcCccceEECCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999988764
No 14
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=99.81 E-value=6.8e-19 Score=151.58 Aligned_cols=117 Identities=28% Similarity=0.497 Sum_probs=109.3
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCCEEEEE
Q 007940 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMS 97 (584)
Q Consensus 18 mrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVIvlS 97 (584)
.+||||||++..+..++..|+..||.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++..+.+|||++|
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~--~dlvl~D~~l~~~~g~~~~~~l~~~~~~~ii~~s 79 (120)
T 2a9o_A 2 KKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQ--PDIIILDLMLPEIDGLEVAKTIRKTSSVPILMLS 79 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHC--CSEEEECSSCSSSCHHHHHHHHHHHCCCCEEEEE
T ss_pred ceEEEEcCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHHHhCC--CCEEEEeccCCCCCHHHHHHHHHhCCCCCEEEEe
Confidence 38999999999999999999999999999999999999998754 9999999999999999999999877889999999
Q ss_pred cCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 007940 98 VDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 136 (584)
Q Consensus 98 a~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrr 136 (584)
+..+......+++.||++||.||++.++|..++++++++
T Consensus 80 ~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~ 118 (120)
T 2a9o_A 80 AKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 118 (120)
T ss_dssp SCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHC
T ss_pred cCCchHHHHHHHhCCHhheEeCCCCHHHHHHHHHHHHcc
Confidence 999988899999999999999999999999999888754
No 15
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=99.81 E-value=8.6e-19 Score=153.48 Aligned_cols=118 Identities=24% Similarity=0.419 Sum_probs=109.4
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc-CCCCEEE
Q 007940 17 GLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLE-MDLPVIM 95 (584)
Q Consensus 17 gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~-~~iPVIv 95 (584)
+.+||||||++..+..++.+|+..||.|..+.++.++++.+.... ||+||+|+.||+++|+++++.++.. +.+|||+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~ 80 (126)
T 1dbw_A 3 DYTVHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAPDVR--NGVLVTDLRMPDMSGVELLRNLGDLKINIPSIV 80 (126)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHTTCEEEEESCHHHHHHHGGGCC--SEEEEEECCSTTSCHHHHHHHHHHTTCCCCEEE
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcCC--CCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 569999999999999999999999999999999999999887644 9999999999999999999999754 6899999
Q ss_pred EEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 007940 96 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 136 (584)
Q Consensus 96 lSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrr 136 (584)
+|+..+.....++++.||++||.||++.++|..++++++++
T Consensus 81 ~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 121 (126)
T 1dbw_A 81 ITGHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIERASEH 121 (126)
T ss_dssp EECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHTT
T ss_pred EECCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999988754
No 16
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=99.81 E-value=9.2e-20 Score=171.93 Aligned_cols=120 Identities=19% Similarity=0.336 Sum_probs=110.7
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCCEE
Q 007940 16 AGLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGL-EMDLPVI 94 (584)
Q Consensus 16 ~gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~-~~~iPVI 94 (584)
.+++||||||++..+..++.+|+..||.|.++.++.+|++.+.... ||+||+|+.||+++|+++++.++. .+.+|||
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii 83 (184)
T 3rqi_A 6 SDKNFLVIDDNEVFAGTLARGLERRGYAVRQAHNKDEALKLAGAEK--FEFITVXLHLGNDSGLSLIAPLCDLQPDARIL 83 (184)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHTTSC--CSEEEECSEETTEESHHHHHHHHHHCTTCEEE
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhCC--CCEEEEeccCCCccHHHHHHHHHhcCCCCCEE
Confidence 4679999999999999999999999999999999999999998754 999999999999999999999975 4689999
Q ss_pred EEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHhc
Q 007940 95 MMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 137 (584)
Q Consensus 95 vlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrrk 137 (584)
++|+..+.+...++++.||++||.||++.++|..++++++++.
T Consensus 84 ~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~~~~~ 126 (184)
T 3rqi_A 84 VLTGYASIATAVQAVKDGADNYLAKPANVESILAALQTNASEV 126 (184)
T ss_dssp EEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHTSTTHHHH
T ss_pred EEeCCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999988876543
No 17
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=99.81 E-value=1.3e-19 Score=180.16 Aligned_cols=119 Identities=27% Similarity=0.448 Sum_probs=112.5
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCCEEEE
Q 007940 17 GLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMM 96 (584)
Q Consensus 17 gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVIvl 96 (584)
.++||||||++..+..++.+|+..||.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.|+..+.+|||++
T Consensus 37 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~DlvllD~~lp~~~G~~l~~~lr~~~~~~iI~l 114 (249)
T 3q9s_A 37 EQRILVIEDDHDIANVLRMDLTDAGYVVDHADSAMNGLIKAREDH--PDLILLDLGLPDFDGGDVVQRLRKNSALPIIVL 114 (249)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHSC--CSEEEEECCSCHHHHHHHHHHHHTTCCCCEEEE
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCC--CCEEEEcCCCCCCCHHHHHHHHHcCCCCCEEEE
Confidence 479999999999999999999999999999999999999998754 999999999999999999999987788999999
Q ss_pred EcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHhc
Q 007940 97 SVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 137 (584)
Q Consensus 97 Sa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrrk 137 (584)
|+..+.+.+.+++++||++||.||++.++|..+++.++++.
T Consensus 115 t~~~~~~~~~~a~~~Ga~~yl~Kp~~~~~L~~~i~~~l~~~ 155 (249)
T 3q9s_A 115 TARDTVEEKVRLLGLGADDYLIKPFHPDELLARVKVQLRQR 155 (249)
T ss_dssp ESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHCCC
T ss_pred ECCCCHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999988654
No 18
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=99.81 E-value=7.6e-19 Score=155.63 Aligned_cols=119 Identities=24% Similarity=0.414 Sum_probs=110.5
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCCEEE
Q 007940 17 GLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGL-EMDLPVIM 95 (584)
Q Consensus 17 gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~-~~~iPVIv 95 (584)
.++||||||++..+..++.+|+..||.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++. .+.+|||+
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~ 80 (132)
T 3crn_A 3 LKRILIVDDDTAILDSTKQILEFEGYEVEIAATAGEGLAKIENEF--FNLALFXIKLPDMEGTELLEKAHKLRPGMKKIM 80 (132)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSC--CSEEEECSBCSSSBHHHHHHHHHHHCTTSEEEE
T ss_pred ccEEEEEeCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhcCC--CCEEEEecCCCCCchHHHHHHHHhhCCCCcEEE
Confidence 469999999999999999999999999999999999999998754 999999999999999999999975 46899999
Q ss_pred EEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHhc
Q 007940 96 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 137 (584)
Q Consensus 96 lSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrrk 137 (584)
+|+..+.....++++.||++||.||++.++|..++++++++.
T Consensus 81 ~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 122 (132)
T 3crn_A 81 VTGYASLENSVFSLNAGADAYIMKPVNPRDLLEKIKEKLDEQ 122 (132)
T ss_dssp EESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EeccccHHHHHHHHhccchhhccCCCCHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999987654
No 19
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=99.81 E-value=9.5e-19 Score=151.94 Aligned_cols=118 Identities=21% Similarity=0.405 Sum_probs=109.9
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCCEEEE
Q 007940 17 GLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMM 96 (584)
Q Consensus 17 gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVIvl 96 (584)
..+||||||++..+..++.+|+..||.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++..+.+|+|++
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ii~~ 80 (123)
T 1xhf_A 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYD--INLVIMDINLPGKNGLLLARELREQANVALMFL 80 (123)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHSC--CSEEEECSSCSSSCHHHHHHHHHHHCCCEEEEE
T ss_pred CceEEEEeCCHHHHHHHHHHHhhCCcEEEEeCCHHHHHHHHhcCC--CCEEEEcCCCCCCCHHHHHHHHHhCCCCcEEEE
Confidence 458999999999999999999999999999999999999998754 999999999999999999999976678999999
Q ss_pred EcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 007940 97 SVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 136 (584)
Q Consensus 97 Sa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrr 136 (584)
|+..+.....++++.||++||.||++.++|..++++++++
T Consensus 81 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 120 (123)
T 1xhf_A 81 TGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 (123)
T ss_dssp ESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred ECCCChHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHHH
Confidence 9999988899999999999999999999999999988765
No 20
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=99.80 E-value=6.1e-19 Score=157.55 Aligned_cols=120 Identities=20% Similarity=0.399 Sum_probs=110.8
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCCEEE
Q 007940 16 AGLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIM 95 (584)
Q Consensus 16 ~gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVIv 95 (584)
..++||||||++..+..++.+|+..||.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++....+|||+
T Consensus 3 ~~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlvllD~~l~~~~g~~l~~~l~~~~~~~ii~ 80 (136)
T 2qzj_A 3 LQTKILIIDGDKDNCQKLKGFLEEKGISIDLAYNCEEAIGKIFSNK--YDLIFLEIILSDGDGWTLCKKIRNVTTCPIVY 80 (136)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHCC--CSEEEEESEETTEEHHHHHHHHHTTCCCCEEE
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHccCCCCCEEE
Confidence 3579999999999999999999999999999999999999998754 99999999999999999999998666899999
Q ss_pred EEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHhc
Q 007940 96 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 137 (584)
Q Consensus 96 lSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrrk 137 (584)
+|+..+.....++++.||++||.||++.++|..++++++++.
T Consensus 81 ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~~ 122 (136)
T 2qzj_A 81 MTYINEDQSILNALNSGGDDYLIKPLNLEILYAKVKAILRRM 122 (136)
T ss_dssp EESCCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEcCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999887653
No 21
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=99.80 E-value=1.1e-18 Score=158.48 Aligned_cols=121 Identities=27% Similarity=0.408 Sum_probs=113.2
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc-CCCCE
Q 007940 15 PAGLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLE-MDLPV 93 (584)
Q Consensus 15 p~gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~-~~iPV 93 (584)
...++||||||++..+..++.+|+..||.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.|+.. +.+||
T Consensus 12 ~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~i 89 (153)
T 3hv2_A 12 TRRPEILLVDSQEVILQRLQQLLSPLPYTLHFARDATQALQLLASRE--VDLVISAAHLPQMDGPTLLARIHQQYPSTTR 89 (153)
T ss_dssp CSCCEEEEECSCHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHSC--CSEEEEESCCSSSCHHHHHHHHHHHCTTSEE
T ss_pred cCCceEEEECCCHHHHHHHHHHhcccCcEEEEECCHHHHHHHHHcCC--CCEEEEeCCCCcCcHHHHHHHHHhHCCCCeE
Confidence 56789999999999999999999999999999999999999998754 9999999999999999999999754 68999
Q ss_pred EEEEcCCChHHHHhhhhcC-CceEEeCCCCHHHHHHHHHHHHHhc
Q 007940 94 IMMSVDGETSRVMKGVQHG-ACDYLLKPIRMKELRNIWQHVFRKK 137 (584)
Q Consensus 94 IvlSa~~d~~~~~~aL~~G-AdDYL~KP~~~~eL~~aI~~vlrrk 137 (584)
|++|+..+.....++++.| |++||.||+...+|..+++++++++
T Consensus 90 i~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~l~~~i~~~l~~~ 134 (153)
T 3hv2_A 90 ILLTGDPDLKLIAKAINEGEIYRYLSKPWDDQELLLALRQALEHQ 134 (153)
T ss_dssp EEECCCCCHHHHHHHHHTTCCSEEECSSCCHHHHHHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHhCCCcceEEeCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999 9999999999999999999998765
No 22
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=99.80 E-value=7.1e-19 Score=153.27 Aligned_cols=117 Identities=24% Similarity=0.471 Sum_probs=108.6
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCCEEE
Q 007940 17 GLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGL-EMDLPVIM 95 (584)
Q Consensus 17 gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~-~~~iPVIv 95 (584)
..+||||||++..+..++.+|+..||.|..+.++.+|+..+.... ||+||+|+.||+++|+++++.++. .+.+|||+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~--~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~ 80 (124)
T 1srr_A 3 NEKILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKER--PDLVLLDMKIPGMDGIEILKRMKVIDENIRVII 80 (124)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHHC--CSEEEEESCCTTCCHHHHHHHHHHHCTTCEEEE
T ss_pred CceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhccC--CCEEEEecCCCCCCHHHHHHHHHHhCCCCCEEE
Confidence 469999999999999999999999999999999999999998754 999999999999999999999975 46899999
Q ss_pred EEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHH
Q 007940 96 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFR 135 (584)
Q Consensus 96 lSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlr 135 (584)
+|+..+.....++++.||++||.||++.++|..+++++++
T Consensus 81 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 120 (124)
T 1srr_A 81 MTAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYLP 120 (124)
T ss_dssp EESSCCHHHHHHHHHHTCCCEEESSCCHHHHHHHHHHHSC
T ss_pred EEccCchHHHHHHHhcChHhhccCCCCHHHHHHHHHHHhc
Confidence 9999998899999999999999999999999999988754
No 23
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=99.80 E-value=1.5e-18 Score=151.77 Aligned_cols=119 Identities=34% Similarity=0.591 Sum_probs=109.3
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHHhCCC-eEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc---cCCC
Q 007940 16 AGLRVLVVDDDLAWLKILEKMLKKCSY-EVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGL---EMDL 91 (584)
Q Consensus 16 ~gmrVLIVDDd~~~r~~L~~lL~~~gy-~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~---~~~i 91 (584)
+.++||||||++..+..++.+|+..|| .|..+.++.+|++.+... .||+||+|+.||+++|+++++.++. .+.+
T Consensus 3 ~~~~ilivdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~--~~dlvi~D~~l~~~~g~~l~~~l~~~~~~~~~ 80 (128)
T 1jbe_A 3 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWNMPNMDGLELLKTIRAXXAMSAL 80 (128)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHTTC--CCCEEEEESCCSSSCHHHHHHHHHC--CCTTC
T ss_pred CccEEEEECCCHHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHhhcccCCC
Confidence 468999999999999999999999998 788999999999998764 4999999999999999999999975 3578
Q ss_pred CEEEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 007940 92 PVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 136 (584)
Q Consensus 92 PVIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrr 136 (584)
|||++|+..+.....++++.||++||.||++.++|..++++++++
T Consensus 81 ~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~ 125 (128)
T 1jbe_A 81 PVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 125 (128)
T ss_dssp CEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred cEEEEecCccHHHHHHHHHhCcCceeecCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988754
No 24
>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1
Probab=99.80 E-value=2.8e-19 Score=188.15 Aligned_cols=210 Identities=23% Similarity=0.289 Sum_probs=160.6
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhC-CCe-EEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCCEE
Q 007940 17 GLRVLVVDDDLAWLKILEKMLKKC-SYE-VTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVI 94 (584)
Q Consensus 17 gmrVLIVDDd~~~r~~L~~lL~~~-gy~-V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVI 94 (584)
.+|||||||++..+..++.+|+.. +|+ |..+.++.+|++.+.+.. ||+||+|+.||+|+|++++++|+....+|||
T Consensus 3 ~~rVLIVDD~~~~r~~L~~~L~~~~g~~vv~~a~~~~eAl~~l~~~~--pDlVllDi~mp~~dGlell~~l~~~~p~pVI 80 (349)
T 1a2o_A 3 KIRVLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDLIKKFN--PDVLTLDVEMPRMDGLDFLEKLMRLRPMPVV 80 (349)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHHC--CSEEEEECCCSSSCHHHHHHHHHHSSCCCEE
T ss_pred CCEEEEEECCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHhccC--CCEEEEECCCCCCCHHHHHHHHHhcCCCcEE
Confidence 479999999999999999999986 788 559999999999998765 9999999999999999999999766569999
Q ss_pred EEEcCCCh--HHHHhhhhcCCceEEeCCCCH---------HHHHHHHHHHHHhcchhhhhhhhhhhhhhhhccccCCCCC
Q 007940 95 MMSVDGET--SRVMKGVQHGACDYLLKPIRM---------KELRNIWQHVFRKKIHEVRDIENIEGFESIHMTRSGSDQS 163 (584)
Q Consensus 95 vlSa~~d~--~~~~~aL~~GAdDYL~KP~~~---------~eL~~aI~~vlrrk~~~~~~~~~~e~~~~~~~~~~~~~~~ 163 (584)
++|+..+. +...++++.||+|||.||++. ++|..+++++.+.+... ..... .
T Consensus 81 vlS~~~~~~~~~~~~al~~Ga~d~l~KP~~~~~~~l~~~~~~L~~~I~~~~~~~~~~--------------~~~~~--~- 143 (349)
T 1a2o_A 81 MVSSLTGKGSEVTLRALELGAIDFVTKPQLGIREGMLAYSEMIAEKVRTAARARIAA--------------HKPMA--A- 143 (349)
T ss_dssp EEECCTHHHHHHHHHHHHHTCCEEEECSSSSCSSCHHHHHHHHHHHHHHHHHCCGGG--------------GSCCC--C-
T ss_pred EEECCCcccHHHHHHHHhCCceEEEECCCCccchhHHHHHHHHHHHHHHHHhhhccc--------------CCCcc--c-
Confidence 99988765 458899999999999999983 66666666665432100 00000 0
Q ss_pred CCCCcccccchhhHHhhhcccccCCCCCCCCCCcccccccccchhHHHHHHHHHHHhcccccCHHHHHhhhCCCCCchH-
Q 007940 164 VDGPLLTGEDLTSVRKRKDAENRHDDRDCGDASSTKKARVVWSIDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRE- 242 (584)
Q Consensus 164 ~~~~ll~gedl~~~~~Rk~~~~~~~d~~~~~~ss~KK~rvvws~eLhqkFv~av~~iG~s~~~Pk~Il~~m~v~~Lt~~- 242 (584)
. ... .. .+. . + ...+..||.+++|+++|.+++ ..++.+
T Consensus 144 ---~-~~~---------------~~---------~~~---~-~-------~~~vv~iGaS~gG~~al~~~l--~~lp~~~ 182 (349)
T 1a2o_A 144 ---P-TTL---------------KA---------GPL---L-S-------SEKLIAIGASTGGTEAIRHVL--QPLPLSS 182 (349)
T ss_dssp ---C-CCC---------------CC---------CCC---C-C-------TTCEEEEEECTTHHHHHHHHH--TTCCTTC
T ss_pred ---c-CCC---------------CC---------ccc---C-C-------CceEEEEecCcccHHHHHHHH--HhCCCCC
Confidence 0 000 00 000 0 0 012567899999999999888 555443
Q ss_pred ---HHHhhhHH--HHHHHHhhhhh---hhhhccCCCccCCCCCCCCCCcccc
Q 007940 243 ---NVASHLQK--YRLYLTRLQKD---ELKTSVGGIKQKDSPSKDSAASFGI 286 (584)
Q Consensus 243 ---~V~sHlqk--yr~~~~RL~~~---~~~~~~~g~~~~~~~~~~~~~~~~~ 286 (584)
.++|||+. +..+++||+.. .|+++.+|+..+++..+..++++.+
T Consensus 183 ~~ivivqH~~~~~~~~~~~~l~~~~~~~v~~a~~g~~~~~g~vyiap~~~~~ 234 (349)
T 1a2o_A 183 PAVIITQHMPPGFTRSFAERLNKLCQISVKEAEDGERVLPGHAYIAPGDKHM 234 (349)
T ss_dssp CEEEEEECCCTTHHHHHHHHHHHHCSSEEEECCTTCBCCTTEEEECCTTSEE
T ss_pred CeEEEEecCCCCccHHHHHHHhccCCCceEEcCCCCEecCCEEEEcCCCcEE
Confidence 38999998 68999999987 7999999999999887777776653
No 25
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=99.80 E-value=1.7e-19 Score=184.26 Aligned_cols=117 Identities=18% Similarity=0.329 Sum_probs=108.4
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEecCCC-CCCHHHHHHHHhccCCCCEE
Q 007940 17 GLRVLVVDDDLAWLKILEKMLKKCSYEVT-TCGLARDALSLLRERKDGYDIVISDVNMP-DMDGFKLLEHVGLEMDLPVI 94 (584)
Q Consensus 17 gmrVLIVDDd~~~r~~L~~lL~~~gy~V~-~a~~~~eAL~~L~~~~~~pDLVIlDi~MP-dmdGlELL~~Ir~~~~iPVI 94 (584)
+.+||||||++.++..++.+|+..||.|. +|.++.+|++.+.... ||+||+|+.|| +|||+++++.|+....+|||
T Consensus 160 ~~rILvVdD~~~~~~~l~~~L~~~g~~v~~~a~~g~eAl~~~~~~~--~dlvl~D~~MPd~mdG~e~~~~ir~~~~~piI 237 (286)
T 3n0r_A 160 ATEVLIIEDEPVIAADIEALVRELGHDVTDIAATRGEALEAVTRRT--PGLVLADIQLADGSSGIDAVKDILGRMDVPVI 237 (286)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHCC--CSEEEEESCCTTSCCTTTTTHHHHHHTTCCEE
T ss_pred CCcEEEEcCCHHHHHHHHHHhhccCceEEEEeCCHHHHHHHHHhCC--CCEEEEcCCCCCCCCHHHHHHHHHhcCCCCEE
Confidence 46899999999999999999999999999 9999999999998854 99999999999 89999999999876699999
Q ss_pred EEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHhc
Q 007940 95 MMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 137 (584)
Q Consensus 95 vlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrrk 137 (584)
++|+.. +...+++++||++||.||++..+|..++++++.+.
T Consensus 238 ~lT~~~--~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~l~~~ 278 (286)
T 3n0r_A 238 FITAFP--ERLLTGERPEPTFLITKPFQPETVKAAIGQALFFH 278 (286)
T ss_dssp EEESCG--GGGCCSSSCCCSSEEESSCCHHHHHHHHHHHHHHS
T ss_pred EEeCCH--HHHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHHhC
Confidence 999985 35778999999999999999999999999998764
No 26
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=99.80 E-value=7.5e-19 Score=156.31 Aligned_cols=121 Identities=23% Similarity=0.374 Sum_probs=111.4
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc---cCCCC
Q 007940 16 AGLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGL---EMDLP 92 (584)
Q Consensus 16 ~gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~---~~~iP 92 (584)
..++||||||++..+..++.+|+..||.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.|+. .+.+|
T Consensus 5 ~~~~iLivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~l~~~~--~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~ 82 (140)
T 3grc_A 5 PRPRILICEDDPDIARLLNLMLEKGGFDSDMVHSAAQALEQVARRP--YAAMTVDLNLPDQDGVSLIRALRRDSRTRDLA 82 (140)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHSC--CSEEEECSCCSSSCHHHHHHHHHTSGGGTTCE
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHCCCeEEEECCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHhCcccCCCC
Confidence 4579999999999999999999999999999999999999998754 999999999999999999999975 46899
Q ss_pred EEEEEcCCChHHHH-hhhhcCCceEEeCCCCHHHHHHHHHHHHHhcc
Q 007940 93 VIMMSVDGETSRVM-KGVQHGACDYLLKPIRMKELRNIWQHVFRKKI 138 (584)
Q Consensus 93 VIvlSa~~d~~~~~-~aL~~GAdDYL~KP~~~~eL~~aI~~vlrrk~ 138 (584)
||++|+..+..... .+++.||++||.||++..+|..++++++++..
T Consensus 83 ii~~s~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~l~~~~ 129 (140)
T 3grc_A 83 IVVVSANAREGELEFNSQPLAVSTWLEKPIDENLLILSLHRAIDNMA 129 (140)
T ss_dssp EEEECTTHHHHHHHHCCTTTCCCEEECSSCCHHHHHHHHHHHHHHHC
T ss_pred EEEEecCCChHHHHHHhhhcCCCEEEeCCCCHHHHHHHHHHHHHhcC
Confidence 99999988777777 99999999999999999999999999987653
No 27
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=99.80 E-value=7.1e-19 Score=154.52 Aligned_cols=121 Identities=28% Similarity=0.473 Sum_probs=104.1
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc-CCCCE
Q 007940 15 PAGLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLE-MDLPV 93 (584)
Q Consensus 15 p~gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~-~~iPV 93 (584)
..++|||||||++..+..++.+|+..||.+..+.++.+|++.+.... ||+||+|+.||+++|+++++.++.. +.+||
T Consensus 5 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~i 82 (130)
T 3eod_A 5 LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFT--PDLMICDIAMPRMNGLKLLEHIRNRGDQTPV 82 (130)
T ss_dssp TTTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHTTCC--CSEEEECCC-----CHHHHHHHHHTTCCCCE
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhcCC--CCEEEEecCCCCCCHHHHHHHHHhcCCCCCE
Confidence 35689999999999999999999999999999999999999997654 9999999999999999999999754 68999
Q ss_pred EEEEcCCChHHHHhhhhcCCceEEeCCC-CHHHHHHHHHHHHHhc
Q 007940 94 IMMSVDGETSRVMKGVQHGACDYLLKPI-RMKELRNIWQHVFRKK 137 (584)
Q Consensus 94 IvlSa~~d~~~~~~aL~~GAdDYL~KP~-~~~eL~~aI~~vlrrk 137 (584)
|++|+..+.....++++.||++||.||+ ..++|..+++++++++
T Consensus 83 i~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~~l~~~i~~~l~~~ 127 (130)
T 3eod_A 83 LVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 (130)
T ss_dssp EEEECCCCHHHHHHHHHHCCSEEEESCC---CHHHHHHHHHHC--
T ss_pred EEEEcCCCHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHHHhchh
Confidence 9999999999999999999999999999 8999999999988654
No 28
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=99.80 E-value=1.1e-18 Score=150.53 Aligned_cols=117 Identities=29% Similarity=0.437 Sum_probs=109.4
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCCEEEEE
Q 007940 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMS 97 (584)
Q Consensus 18 mrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVIvlS 97 (584)
++||||||++..+..++.+|+..||.+..+.++.+|+..+.... ||+||+|+.||+++|+++++.++..+.+|+|++|
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ii~~s 79 (121)
T 1zh2_A 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRK--PDLIILDLGLPDGDGIEFIRDLRQWSAVPVIVLS 79 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHHC--CSEEEEESEETTEEHHHHHHHHHTTCCCCEEEEE
T ss_pred cEEEEEeCCHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHhcCC--CCEEEEeCCCCCCcHHHHHHHHHhCCCCcEEEEE
Confidence 58999999999999999999999999999999999999887754 9999999999999999999999866789999999
Q ss_pred cCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 007940 98 VDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 136 (584)
Q Consensus 98 a~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrr 136 (584)
+..+.....++++.||++||.||++.++|..++++++++
T Consensus 80 ~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~ 118 (121)
T 1zh2_A 80 ARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118 (121)
T ss_dssp SCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhcCCCeEEeCCcCHHHHHHHHHHHHHh
Confidence 999999899999999999999999999999999988765
No 29
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=99.80 E-value=1.3e-18 Score=150.54 Aligned_cols=116 Identities=28% Similarity=0.493 Sum_probs=106.6
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCCe-EEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCCEE
Q 007940 17 GLRVLVVDDDLAWLKILEKMLKKCSYE-VTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGL-EMDLPVI 94 (584)
Q Consensus 17 gmrVLIVDDd~~~r~~L~~lL~~~gy~-V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~-~~~iPVI 94 (584)
+++||||||++..+..++.+|+..||. +..+.++.+|++.+.... ||+||+|+.||+++|+++++.++. .+.+|||
T Consensus 2 ~~~ilivdd~~~~~~~l~~~l~~~g~~vv~~~~~~~~a~~~~~~~~--~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii 79 (120)
T 1tmy_A 2 GKRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKELK--PDIVTMDITMPEMNGIDAIKEIMKIDPNAKII 79 (120)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHC--CSEEEEECSCGGGCHHHHHHHHHHHCTTCCEE
T ss_pred CceEEEEcCcHHHHHHHHHHHhhcCcEEEEEECCHHHHHHHHHhcC--CCEEEEeCCCCCCcHHHHHHHHHhhCCCCeEE
Confidence 579999999999999999999999999 558999999999998755 999999999999999999999965 4689999
Q ss_pred EEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHH
Q 007940 95 MMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVF 134 (584)
Q Consensus 95 vlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vl 134 (584)
++|+..+.....++++.||++||.||++.++|..++++++
T Consensus 80 ~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 119 (120)
T 1tmy_A 80 VCSAMGQQAMVIEAIKAGAKDFIVKPFQPSRVVEALNKVS 119 (120)
T ss_dssp EEECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHC
T ss_pred EEeCCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999887753
No 30
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=99.80 E-value=1.9e-18 Score=166.35 Aligned_cols=119 Identities=29% Similarity=0.539 Sum_probs=111.3
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc-CCCCEEE
Q 007940 17 GLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLE-MDLPVIM 95 (584)
Q Consensus 17 gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~-~~iPVIv 95 (584)
.++||||||++..+..++.+|+..||.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++.. +.+|||+
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~--~dlvllD~~l~~~~g~~~~~~lr~~~~~~~ii~ 79 (225)
T 1kgs_A 2 NVRVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALNEP--FDVVILDIMLPVHDGWEILKSMRESGVNTPVLM 79 (225)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSC--CSEEEEESCCSSSCHHHHHHHHHHTTCCCCEEE
T ss_pred CceEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 479999999999999999999999999999999999999998754 9999999999999999999999754 6899999
Q ss_pred EEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHhc
Q 007940 96 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 137 (584)
Q Consensus 96 lSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrrk 137 (584)
+|+..+......+++.||++||.||++.++|..++++++++.
T Consensus 80 ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~ 121 (225)
T 1kgs_A 80 LTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRK 121 (225)
T ss_dssp EESSCHHHHHHHTCCCCCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999988764
No 31
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=99.79 E-value=1.5e-18 Score=157.07 Aligned_cols=122 Identities=20% Similarity=0.319 Sum_probs=109.5
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHhc-----CCCceEEEEecCCCCCCHHHHHHHHhcc
Q 007940 16 AGLRVLVVDDDLAWLKILEKMLKKCSY--EVTTCGLARDALSLLRER-----KDGYDIVISDVNMPDMDGFKLLEHVGLE 88 (584)
Q Consensus 16 ~gmrVLIVDDd~~~r~~L~~lL~~~gy--~V~~a~~~~eAL~~L~~~-----~~~pDLVIlDi~MPdmdGlELL~~Ir~~ 88 (584)
..++||||||++..+..++.+|+..|+ .|..+.++.+|++.+... ...||+||+|+.||+++|+++++.|+..
T Consensus 7 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~~~~~~~~dlillD~~lp~~~g~~l~~~l~~~ 86 (149)
T 1i3c_A 7 PPKVILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLNLPKKDGREVLAEIKQN 86 (149)
T ss_dssp CCEEEEEECCCHHHHHHHHHHHHSCCSCEEEEEECSHHHHHHHHTTCGGGTTCCCCSEEEECSCCSSSCHHHHHHHHHHC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHhcCCCccEEEeCCHHHHHHHHHhccccccCCCCCEEEEeCCCCCCcHHHHHHHHHhC
Confidence 457999999999999999999999887 788999999999998752 1249999999999999999999999754
Q ss_pred ---CCCCEEEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHhc
Q 007940 89 ---MDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 137 (584)
Q Consensus 89 ---~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrrk 137 (584)
+.+|||++|+..+...+.++++.||++||.||++.++|..+++++++..
T Consensus 87 ~~~~~~piiils~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 138 (149)
T 1i3c_A 87 PDLKRIPVVVLTTSHNEDDVIASYELHVNCYLTKSRNLKDLFKMVQGIESFW 138 (149)
T ss_dssp TTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHH
T ss_pred cCcCCCeEEEEECCCChHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHH
Confidence 5789999999999899999999999999999999999999999887543
No 32
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=99.79 E-value=3.4e-19 Score=158.86 Aligned_cols=120 Identities=18% Similarity=0.306 Sum_probs=111.6
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHHh-CCCeEEEECCHHHHHHHHHh-cCCCceEEEEecCCC-CCCHHHHHHHHhc---cC
Q 007940 16 AGLRVLVVDDDLAWLKILEKMLKK-CSYEVTTCGLARDALSLLRE-RKDGYDIVISDVNMP-DMDGFKLLEHVGL---EM 89 (584)
Q Consensus 16 ~gmrVLIVDDd~~~r~~L~~lL~~-~gy~V~~a~~~~eAL~~L~~-~~~~pDLVIlDi~MP-dmdGlELL~~Ir~---~~ 89 (584)
..++||||||++..+..++.+|+. .||+|..+.++.+|++.+.+ .. ||+||+|+.|| +++|+++++.|+. .+
T Consensus 3 ~~~~ilivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~a~~~l~~~~~--~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~ 80 (140)
T 3lua_A 3 LDGTVLLIDYFEYEREKTKIIFDNIGEYDFIEVENLKKFYSIFKDLDS--ITLIIMDIAFPVEKEGLEVLSAIRNNSRTA 80 (140)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHHCCCEEEEECSHHHHHTTTTTCCC--CSEEEECSCSSSHHHHHHHHHHHHHSGGGT
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhccCccEEEECCHHHHHHHHhcCCC--CcEEEEeCCCCCCCcHHHHHHHHHhCcccC
Confidence 467999999999999999999999 99999999999999999887 54 99999999999 9999999999975 47
Q ss_pred CCCEEEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHhc
Q 007940 90 DLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 137 (584)
Q Consensus 90 ~iPVIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrrk 137 (584)
.+|||++|+..+.+...++++.||++||.||++..+|..++++++++.
T Consensus 81 ~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 128 (140)
T 3lua_A 81 NTPVIIATKSDNPGYRHAALKFKVSDYILKPYPTKRLENSVRSVLKIC 128 (140)
T ss_dssp TCCEEEEESCCCHHHHHHHHHSCCSEEEESSCCTTHHHHHHHHHHCC-
T ss_pred CCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHhc
Confidence 899999999999999999999999999999999999999999988764
No 33
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=99.79 E-value=8.8e-19 Score=169.02 Aligned_cols=121 Identities=31% Similarity=0.482 Sum_probs=107.6
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHHhCCC-eEEEECCHHHHHHHHHhc-----------CCCceEEEEecCCCCCCHHHHH
Q 007940 15 PAGLRVLVVDDDLAWLKILEKMLKKCSY-EVTTCGLARDALSLLRER-----------KDGYDIVISDVNMPDMDGFKLL 82 (584)
Q Consensus 15 p~gmrVLIVDDd~~~r~~L~~lL~~~gy-~V~~a~~~~eAL~~L~~~-----------~~~pDLVIlDi~MPdmdGlELL 82 (584)
..+++||||||++..+..++.+|+..|| .|..+.++.+|++.+... ...||+||+|+.||+++|++++
T Consensus 59 ~~~~~ILiVdDd~~~~~~l~~~L~~~g~~~v~~a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~~lp~~~G~el~ 138 (206)
T 3mm4_A 59 LRGKRVLVVDDNFISRKVATGKLKKMGVSEVEQCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQMPEMDGYEAT 138 (206)
T ss_dssp TTTCEEEEECSCHHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEESCCSSSCHHHHH
T ss_pred cCCCEEEEEeCCHHHHHHHHHHHHHcCCCeeeeeCCHHHHHHHHHhhcccccccccccCCCCCEEEEcCCCCCCCHHHHH
Confidence 4678999999999999999999999998 899999999999999864 1249999999999999999999
Q ss_pred HHHhcc-----CCCCEEEEEcCC-ChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHhc
Q 007940 83 EHVGLE-----MDLPVIMMSVDG-ETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 137 (584)
Q Consensus 83 ~~Ir~~-----~~iPVIvlSa~~-d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrrk 137 (584)
+.|+.. +.+|||++|+.. +.+...++++.||++||.||++ +|..+|+++++++
T Consensus 139 ~~lr~~~~~~~~~~piI~ls~~~~~~~~~~~~~~~Ga~~~l~KP~~--~L~~~i~~~l~~~ 197 (206)
T 3mm4_A 139 REIRKVEKSYGVRTPIIAVSGHDPGSEEARETIQAGMDAFLDKSLN--QLANVIREIESKR 197 (206)
T ss_dssp HHHHHHHHTTTCCCCEEEEESSCCCHHHHHHHHHHTCSEEEETTCT--THHHHHHHHC---
T ss_pred HHHHhhhhhcCCCCcEEEEECCCCcHHHHHHHHhCCCCEEEcCcHH--HHHHHHHHHHhhh
Confidence 999753 789999999987 7788889999999999999999 8999998887654
No 34
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=99.79 E-value=2.1e-18 Score=153.91 Aligned_cols=121 Identities=25% Similarity=0.479 Sum_probs=111.8
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCCEEE
Q 007940 17 GLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGL-EMDLPVIM 95 (584)
Q Consensus 17 gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~-~~~iPVIv 95 (584)
.++||||||++..+..++.+|+..||.|..+.++.+|++.+......||+||+|+.||+++|+++++.++. .+.+|||+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ 82 (143)
T 3jte_A 3 LAKILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVITDMKMPKLSGMDILREIKKITPHMAVII 82 (143)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTTTTCCEEEEESCCSSSCHHHHHHHHHHHCTTCEEEE
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHHhCCCCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEE
Confidence 46999999999999999999999999999999999999999853345999999999999999999999975 46899999
Q ss_pred EEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHhc
Q 007940 96 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 137 (584)
Q Consensus 96 lSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrrk 137 (584)
+|+..+.....++++.||++||.||++.++|..+++++++++
T Consensus 83 ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~ 124 (143)
T 3jte_A 83 LTGHGDLDNAILAMKEGAFEYLRKPVTAQDLSIAINNAINRK 124 (143)
T ss_dssp EECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998765
No 35
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=99.79 E-value=1e-18 Score=151.68 Aligned_cols=117 Identities=21% Similarity=0.416 Sum_probs=102.6
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc---CCCCEE
Q 007940 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLE---MDLPVI 94 (584)
Q Consensus 18 mrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~---~~iPVI 94 (584)
.+||||||++..+..++.+|+..||.+..+.++.+|+..+.... ||+||+|+.||+++|+++++.++.. +.+|||
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~~~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii 79 (124)
T 1mb3_A 2 KKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIARENK--PDLILMDIQLPEISGLEVTKWLKEDDDLAHIPVV 79 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHHC--CSEEEEESBCSSSBHHHHHHHHHHSTTTTTSCEE
T ss_pred cEEEEEcCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHcCccccCCcEE
Confidence 48999999999999999999999999999999999999988754 9999999999999999999999753 578999
Q ss_pred EEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 007940 95 MMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 136 (584)
Q Consensus 95 vlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrr 136 (584)
++|+..+......+++.||++||.||++.++|..++++++++
T Consensus 80 ~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 121 (124)
T 1mb3_A 80 AVTAFAMKGDEERIREGGCEAYISKPISVVHFLETIKRLLER 121 (124)
T ss_dssp EEC------CHHHHHHHTCSEEECSSCCHHHHHHHHHHHHSC
T ss_pred EEECCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHhc
Confidence 999988888888999999999999999999999999887754
No 36
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=99.79 E-value=1.3e-18 Score=155.70 Aligned_cols=120 Identities=20% Similarity=0.362 Sum_probs=111.2
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHHhCCCe--EEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc---cCC
Q 007940 16 AGLRVLVVDDDLAWLKILEKMLKKCSYE--VTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGL---EMD 90 (584)
Q Consensus 16 ~gmrVLIVDDd~~~r~~L~~lL~~~gy~--V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~---~~~ 90 (584)
.+++||||||++..+..++.+|+..|+. |..+.++.+|++.+.... ||+||+|+.||+++|+++++.|+. .+.
T Consensus 4 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~--~dlii~D~~l~~~~g~~~~~~lr~~~~~~~ 81 (144)
T 3kht_A 4 RSKRVLVVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQAK--YDLIILDIGLPIANGFEVMSAVRKPGANQH 81 (144)
T ss_dssp -CEEEEEECCCHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHTTCC--CSEEEECTTCGGGCHHHHHHHHHSSSTTTT
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHhcCCCeeEEEECCHHHHHHHhhcCC--CCEEEEeCCCCCCCHHHHHHHHHhcccccC
Confidence 5689999999999999999999999987 889999999999998754 999999999999999999999976 468
Q ss_pred CCEEEEEcCCChHHHHhhhhcCCceEEeCCC-CHHHHHHHHHHHHHhc
Q 007940 91 LPVIMMSVDGETSRVMKGVQHGACDYLLKPI-RMKELRNIWQHVFRKK 137 (584)
Q Consensus 91 iPVIvlSa~~d~~~~~~aL~~GAdDYL~KP~-~~~eL~~aI~~vlrrk 137 (584)
+|||++|+..+.+...++++.||++||.||+ +.++|..++++++++.
T Consensus 82 ~pii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~~l~~~i~~~l~~~ 129 (144)
T 3kht_A 82 TPIVILTDNVSDDRAKQCMAAGASSVVDKSSNNVTDFYGRIYAIFSYW 129 (144)
T ss_dssp CCEEEEETTCCHHHHHHHHHTTCSEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 9999999999998764
No 37
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.79 E-value=2e-18 Score=151.94 Aligned_cols=121 Identities=19% Similarity=0.345 Sum_probs=110.8
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHhcC-----CCceEEEEecCCCCCCHHHHHHHHhcc-
Q 007940 17 GLRVLVVDDDLAWLKILEKMLKKCSY--EVTTCGLARDALSLLRERK-----DGYDIVISDVNMPDMDGFKLLEHVGLE- 88 (584)
Q Consensus 17 gmrVLIVDDd~~~r~~L~~lL~~~gy--~V~~a~~~~eAL~~L~~~~-----~~pDLVIlDi~MPdmdGlELL~~Ir~~- 88 (584)
+++||||||++..+..++.+|+..|+ .|..+.++.+|++.+.... ..||+||+|+.||+++|+++++.++..
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~ 81 (140)
T 1k68_A 2 HKKIFLVEDNKADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILLXLNLPKKDGREVLAEIKSDP 81 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSCSSSCHHHHHHHHHHST
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHcccccccCCCCcEEEEecCCCcccHHHHHHHHHcCc
Confidence 67999999999999999999999998 8999999999999998621 349999999999999999999999764
Q ss_pred --CCCCEEEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHhc
Q 007940 89 --MDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 137 (584)
Q Consensus 89 --~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrrk 137 (584)
+.+|||++|+..+.+...++++.||++||.||++..+|..++++++++.
T Consensus 82 ~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 132 (140)
T 1k68_A 82 TLKRIPVVVLSTSINEDDIFHSYDLHVNCYITKSANLSQLFQIVKGIEEFW 132 (140)
T ss_dssp TGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHH
T ss_pred ccccccEEEEecCCcHHHHHHHHHhchhheecCCCCHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999988654
No 38
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=99.79 E-value=1.9e-18 Score=152.12 Aligned_cols=118 Identities=26% Similarity=0.355 Sum_probs=103.9
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc---CCCC
Q 007940 16 AGLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLE---MDLP 92 (584)
Q Consensus 16 ~gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~---~~iP 92 (584)
..++||||||++..+..++.+|+ .+|.|..+.++.+|++.+.+.. ||+||+|+.||+++|+++++.++.. +.+|
T Consensus 3 ~~~~ilivdd~~~~~~~l~~~l~-~~~~v~~~~~~~~a~~~l~~~~--~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~p 79 (133)
T 3nhm_A 3 LKPKVLIVENSWTMRETLRLLLS-GEFDCTTAADGASGLQQALAHP--PDVLISDVNMDGMDGYALCGHFRSEPTLKHIP 79 (133)
T ss_dssp --CEEEEECSCHHHHHHHHHHHT-TTSEEEEESSHHHHHHHHHHSC--CSEEEECSSCSSSCHHHHHHHHHHSTTTTTCC
T ss_pred CCCEEEEEcCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHhCCccCCCC
Confidence 46799999999999999999999 7899999999999999998754 9999999999999999999999753 4799
Q ss_pred EEEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHhc
Q 007940 93 VIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 137 (584)
Q Consensus 93 VIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrrk 137 (584)
||++|+..+... ..+++.||++||.||++.++|..++++++++.
T Consensus 80 ii~~s~~~~~~~-~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~ 123 (133)
T 3nhm_A 80 VIFVSGYAPRTE-GPADQPVPDAYLVKPVKPPVLIAQLHALLARA 123 (133)
T ss_dssp EEEEESCCC------TTSCCCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCcHhH-HHHhhcCCceEEeccCCHHHHHHHHHHHHhhh
Confidence 999999887777 89999999999999999999999999998765
No 39
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=99.79 E-value=2.2e-18 Score=156.00 Aligned_cols=120 Identities=22% Similarity=0.424 Sum_probs=108.4
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHh-------cCCCceEEEEecCCCCCCHHHHHHHHh
Q 007940 16 AGLRVLVVDDDLAWLKILEKMLKKCSY--EVTTCGLARDALSLLRE-------RKDGYDIVISDVNMPDMDGFKLLEHVG 86 (584)
Q Consensus 16 ~gmrVLIVDDd~~~r~~L~~lL~~~gy--~V~~a~~~~eAL~~L~~-------~~~~pDLVIlDi~MPdmdGlELL~~Ir 86 (584)
..++||||||++..+..++.+|+..|+ .|..+.++.+|++.++. ....||+||+|+.||+++|+++++.|+
T Consensus 3 ~~~~ILivddd~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~dliilD~~l~~~~g~~~~~~lr 82 (152)
T 3heb_A 3 LSVTIVMIEDDLGHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLNLPDMTGIDILKLVK 82 (152)
T ss_dssp --CEEEEECCCHHHHHHHHHHHHHTTCCCCEEEESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSBCSSSBHHHHHHHHH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhCCCcceEEEeCCHHHHHHHHhccccccccccCCCCEEEEeCCCCCCcHHHHHHHHH
Confidence 468999999999999999999999998 89999999999999961 124599999999999999999999997
Q ss_pred c---cCCCCEEEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHH
Q 007940 87 L---EMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFR 135 (584)
Q Consensus 87 ~---~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlr 135 (584)
. .+.+|||++|+..+.....++++.||++||.||++.++|..+++++.+
T Consensus 83 ~~~~~~~~pii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 134 (152)
T 3heb_A 83 ENPHTRRSPVVILTTTDDQREIQRCYDLGANVYITKPVNYENFANAIRQLGL 134 (152)
T ss_dssp HSTTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred hcccccCCCEEEEecCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHH
Confidence 5 368899999999999999999999999999999999999999998854
No 40
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=99.79 E-value=1.1e-18 Score=152.81 Aligned_cols=119 Identities=28% Similarity=0.517 Sum_probs=109.1
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHHhCCC-eEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc---CCC
Q 007940 16 AGLRVLVVDDDLAWLKILEKMLKKCSY-EVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLE---MDL 91 (584)
Q Consensus 16 ~gmrVLIVDDd~~~r~~L~~lL~~~gy-~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~---~~i 91 (584)
..++||||||++..+..++.+|+..|| .|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++.. +.+
T Consensus 5 ~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~~~--~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~~ 82 (129)
T 1p6q_A 5 EKIKVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMAQNP--HHLVISDFNMPKMDGLGLLQAVRANPATKKA 82 (129)
T ss_dssp SCCCEEEECSSHHHHHHHHHHHHTTTCSCEECCSSHHHHHHHHHTSC--CSEEEECSSSCSSCHHHHHHHHTTCTTSTTC
T ss_pred ccCeEEEEcCCHHHHHHHHHHHHHCCCcEEEecCCHHHHHHHHHcCC--CCEEEEeCCCCCCCHHHHHHHHhcCccccCC
Confidence 357999999999999999999999998 7888999999999998754 9999999999999999999999764 578
Q ss_pred CEEEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 007940 92 PVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 136 (584)
Q Consensus 92 PVIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrr 136 (584)
|||++|+..+.....++++.||++||.||++.++|..++++++++
T Consensus 83 ~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 127 (129)
T 1p6q_A 83 AFIILTAQGDRALVQKAAALGANNVLAKPFTIEKMKAAIEAVFGA 127 (129)
T ss_dssp EEEECCSCCCHHHHHHHHHHTCSCEECCCSSHHHHHHHHHHHHHC
T ss_pred CEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHh
Confidence 999999999989999999999999999999999999999988754
No 41
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=99.79 E-value=5.6e-19 Score=157.27 Aligned_cols=120 Identities=18% Similarity=0.233 Sum_probs=110.5
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCC--CCHHHHHHHHhcc-CCCC
Q 007940 16 AGLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPD--MDGFKLLEHVGLE-MDLP 92 (584)
Q Consensus 16 ~gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPd--mdGlELL~~Ir~~-~~iP 92 (584)
..++||||||++..+..++.+|+..||.|..+.++.+|++.+.+. .||+||+|+.||+ ++|+++++.++.. +.+|
T Consensus 5 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlvi~D~~l~~~~~~g~~~~~~l~~~~~~~~ 82 (136)
T 3kto_A 5 HHPIIYLVDHQKDARAALSKLLSPLDVTIQCFASAESFMRQQISD--DAIGMIIEAHLEDKKDSGIELLETLVKRGFHLP 82 (136)
T ss_dssp --CEEEEECSCHHHHHHHHHHHTTSSSEEEEESSHHHHTTSCCCT--TEEEEEEETTGGGBTTHHHHHHHHHHHTTCCCC
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhcc--CCCEEEEeCcCCCCCccHHHHHHHHHhCCCCCC
Confidence 457999999999999999999999999999999999999988764 4999999999999 9999999999754 6899
Q ss_pred EEEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHhc
Q 007940 93 VIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 137 (584)
Q Consensus 93 VIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrrk 137 (584)
||++|+..+.....++++.||++||.||++.++|..++++++.+.
T Consensus 83 ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~ 127 (136)
T 3kto_A 83 TIVMASSSDIPTAVRAMRASAADFIEKPFIEHVLVHDVQQIINGA 127 (136)
T ss_dssp EEEEESSCCHHHHHHHHHTTCSEEEESSBCHHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCHHHHHHHHHcChHHheeCCCCHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999988764
No 42
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=99.79 E-value=2.9e-18 Score=151.45 Aligned_cols=119 Identities=26% Similarity=0.513 Sum_probs=109.9
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc-CCCCEEE
Q 007940 17 GLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLE-MDLPVIM 95 (584)
Q Consensus 17 gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~-~~iPVIv 95 (584)
+.+||||||++..+..+..+|+..||.|..+.++.+|+..+.... ||+||+|+.||+++|+++++.++.. +.+|||+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~--~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~ 80 (136)
T 1mvo_A 3 NKKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEK--PDLIVLDVMLPKLDGIEVCKQLRQQKLMFPILM 80 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHC--CSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEE
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhhcC--CCEEEEecCCCCCCHHHHHHHHHcCCCCCCEEE
Confidence 569999999999999999999999999999999999999988754 9999999999999999999999754 6789999
Q ss_pred EEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHhc
Q 007940 96 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 137 (584)
Q Consensus 96 lSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrrk 137 (584)
+|+..+......+++.||++||.||++.++|..++++++++.
T Consensus 81 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 122 (136)
T 1mvo_A 81 LTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRS 122 (136)
T ss_dssp EECTTCCCCHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHTC
T ss_pred EECCCCHHHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHhh
Confidence 999988888889999999999999999999999999887653
No 43
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=99.79 E-value=1.4e-18 Score=153.90 Aligned_cols=120 Identities=24% Similarity=0.373 Sum_probs=111.7
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc-CCCCEE
Q 007940 16 AGLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLE-MDLPVI 94 (584)
Q Consensus 16 ~gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~-~~iPVI 94 (584)
..+|||||||++..+..++.+|+..++.|..+.++.+|++.+.+.. ||+||+|+.||+++|+++++.++.. +.+|||
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~l~~~~--~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii 83 (137)
T 3hdg_A 6 VALKILIVEDDTDAREWLSTIISNHFPEVWSAGDGEEGERLFGLHA--PDVIITDIRMPKLGGLEMLDRIKAGGAKPYVI 83 (137)
T ss_dssp -CCCEEEECSCHHHHHHHHHHHHTTCSCEEEESSHHHHHHHHHHHC--CSEEEECSSCSSSCHHHHHHHHHHTTCCCEEE
T ss_pred cccEEEEEeCCHHHHHHHHHHHHhcCcEEEEECCHHHHHHHHhccC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEE
Confidence 4689999999999999999999998999999999999999998865 9999999999999999999999754 688999
Q ss_pred EEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHhc
Q 007940 95 MMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 137 (584)
Q Consensus 95 vlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrrk 137 (584)
++|+..+.+...+++++||++||.||++.++|..++++++++.
T Consensus 84 ~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 126 (137)
T 3hdg_A 84 VISAFSEMKYFIKAIELGVHLFLPKPIEPGRLMETLEDFRHIK 126 (137)
T ss_dssp ECCCCCCHHHHHHHHHHCCSEECCSSCCHHHHHHHHHHHHHHH
T ss_pred EEecCcChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998765
No 44
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=99.79 E-value=1.9e-18 Score=164.77 Aligned_cols=121 Identities=26% Similarity=0.403 Sum_probs=111.9
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCCE
Q 007940 15 PAGLRVLVVDDDLAWLKILEKMLKKCSYEVT-TCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPV 93 (584)
Q Consensus 15 p~gmrVLIVDDd~~~r~~L~~lL~~~gy~V~-~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPV 93 (584)
+..++||||||++..+..+..+|+..||.|. .+.++.+|++.+.... ||+||+|+.||+++|+++++.++.....||
T Consensus 11 ~m~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~~~~~~--~dlvi~D~~~p~~~g~~~~~~l~~~~~~pi 88 (205)
T 1s8n_A 11 AVPRRVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAELHK--PDLVIMDVKMPRRDGIDAASEIASKRIAPI 88 (205)
T ss_dssp CCCCEEEEECSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHC--CSEEEEESSCSSSCHHHHHHHHHHTTCSCE
T ss_pred CCCccEEEEECCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhcC--CCEEEEeCCCCCCChHHHHHHHHhcCCCCE
Confidence 3457999999999999999999999999988 8999999999998765 999999999999999999999987666799
Q ss_pred EEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHhc
Q 007940 94 IMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 137 (584)
Q Consensus 94 IvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrrk 137 (584)
|++|+..+.....++++.||++||.||++..+|..++++++++.
T Consensus 89 i~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 132 (205)
T 1s8n_A 89 VVLTAFSQRDLVERARDAGAMAYLVKPFSISDLIPAIELAVSRF 132 (205)
T ss_dssp EEEEEGGGHHHHHTTGGGSCEEEEEESCCHHHHHHHHHHHHHHH
T ss_pred EEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988654
No 45
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=99.79 E-value=1.3e-18 Score=153.05 Aligned_cols=119 Identities=29% Similarity=0.518 Sum_probs=108.2
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhC-CCeEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc--CCCC
Q 007940 17 GLRVLVVDDDLAWLKILEKMLKKC-SYEVT-TCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLE--MDLP 92 (584)
Q Consensus 17 gmrVLIVDDd~~~r~~L~~lL~~~-gy~V~-~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~--~~iP 92 (584)
+++||||||++..+..++.+|+.. ||.++ .+.++.+|++.+.... ||+||+|+.||+++|+++++.++.. +.+|
T Consensus 2 ~~~ilivdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~--~dlvllD~~l~~~~g~~~~~~l~~~~~~~~~ 79 (130)
T 1dz3_A 2 SIKVCIADDNRELVSLLDEYISSQPDMEVIGTAYNGQDCLQMLEEKR--PDILLLDIIMPHLDGLAVLERIRAGFEHQPN 79 (130)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHHC--CSEEEEESCCSSSCHHHHHHHHHHHCSSCCE
T ss_pred ceEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhcCC--CCEEEEecCCCCCCHHHHHHHHHhcCCCCCc
Confidence 469999999999999999999987 78865 7899999999998754 9999999999999999999999753 5788
Q ss_pred EEEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHhc
Q 007940 93 VIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 137 (584)
Q Consensus 93 VIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrrk 137 (584)
||++|+..+.....++++.||++||.||++.++|..++++++++.
T Consensus 80 ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~ 124 (130)
T 1dz3_A 80 VIMLTAFGQEDVTKKAVELGASYFILKPFDMENLAHHIRQVYGKT 124 (130)
T ss_dssp EEEEEETTCHHHHHHHHHTTCEEEEECSSCCTTHHHHHHHHHHCC
T ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999987653
No 46
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=99.78 E-value=3.5e-18 Score=151.21 Aligned_cols=122 Identities=24% Similarity=0.340 Sum_probs=110.2
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc--CCCC
Q 007940 15 PAGLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLE--MDLP 92 (584)
Q Consensus 15 p~gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~--~~iP 92 (584)
...++||||||++..+..++.+|+..||.|..+.++.+|+..+... ..||+||+|+.||+++|+++++.|+.. +.+|
T Consensus 5 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~-~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~ 83 (136)
T 3hdv_A 5 AARPLVLVVDDNAVNREALILYLKSRGIDAVGADGAEEARLYLHYQ-KRIGLMITDLRMQPESGLDLIRTIRASERAALS 83 (136)
T ss_dssp --CCEEEEECSCHHHHHHHHHHHHHTTCCEEEESSHHHHHHHHHHC-TTEEEEEECSCCSSSCHHHHHHHHHTSTTTTCE
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHHhC-CCCcEEEEeccCCCCCHHHHHHHHHhcCCCCCC
Confidence 3467999999999999999999999999999999999999998764 249999999999999999999999764 6889
Q ss_pred EEEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHhc
Q 007940 93 VIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 137 (584)
Q Consensus 93 VIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrrk 137 (584)
||++|+..+.+...++++.||++||.||++.++|..+++++..+.
T Consensus 84 ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 128 (136)
T 3hdv_A 84 IIVVSGDTDVEEAVDVMHLGVVDFLLKPVDLGKLLELVNKELKIG 128 (136)
T ss_dssp EEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC--
T ss_pred EEEEeCCCChHHHHHHHhCCcceEEeCCCCHHHHHHHHHHHhcCc
Confidence 999999999999999999999999999999999999999887654
No 47
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=99.78 E-value=3.1e-18 Score=165.68 Aligned_cols=119 Identities=28% Similarity=0.415 Sum_probs=111.4
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCCEEEE
Q 007940 17 GLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMM 96 (584)
Q Consensus 17 gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVIvl 96 (584)
.++||||||++..+..++.+|+..||.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++..+.+|||++
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlvllD~~l~~~~g~~~~~~l~~~~~~~ii~l 81 (230)
T 2oqr_A 4 ATSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAG--ADIVLLDLMLPGMSGTDVCKQLRARSSVPVIMV 81 (230)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHHC--CSEEEEESSCSSSCHHHHHHHHHHHCSCSEEEE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhccC--CCEEEEECCCCCCCHHHHHHHHHcCCCCCEEEE
Confidence 369999999999999999999999999999999999999998754 999999999999999999999987788999999
Q ss_pred EcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHhc
Q 007940 97 SVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 137 (584)
Q Consensus 97 Sa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrrk 137 (584)
|+..+......+++.||++||.||++.++|..++++++++.
T Consensus 82 t~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~ 122 (230)
T 2oqr_A 82 TARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRG 122 (230)
T ss_dssp ECCHHHHHHHHHHHHCCSCCCCSSCCHHHHHHHHHHHHTTT
T ss_pred eCCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 99988888999999999999999999999999999988653
No 48
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=99.78 E-value=1.1e-18 Score=152.78 Aligned_cols=117 Identities=25% Similarity=0.296 Sum_probs=106.2
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc---cCCCCE
Q 007940 17 GLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGL---EMDLPV 93 (584)
Q Consensus 17 gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~---~~~iPV 93 (584)
.++||||||++..+..++.+|+..||.|..+.++.+|++.+.+.. ||+||+|+.||+++|+++++.++. .+.+||
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~i 80 (127)
T 3i42_A 3 LQQALIVEDYQAAAETFKELLEMLGFQADYVMSGTDALHAMSTRG--YDAVFIDLNLPDTSGLALVKQLRALPMEKTSKF 80 (127)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHTTEEEEEESSHHHHHHHHHHSC--CSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEE
T ss_pred cceEEEEcCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCE
Confidence 469999999999999999999999999999999999999998754 999999999999999999999975 468999
Q ss_pred EEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 007940 94 IMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 136 (584)
Q Consensus 94 IvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrr 136 (584)
|++|+..+... ..++..||++||.||++.++|.+++++..++
T Consensus 81 i~~s~~~~~~~-~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 122 (127)
T 3i42_A 81 VAVSGFAKNDL-GKEACELFDFYLEKPIDIASLEPILQSIEGH 122 (127)
T ss_dssp EEEECC-CTTC-CHHHHHHCSEEEESSCCHHHHHHHHHHHC--
T ss_pred EEEECCcchhH-HHHHHHhhHHheeCCCCHHHHHHHHHHhhcc
Confidence 99999988777 8899999999999999999999999887644
No 49
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=99.78 E-value=8e-19 Score=152.97 Aligned_cols=118 Identities=26% Similarity=0.441 Sum_probs=108.9
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc---CCCCE
Q 007940 17 GLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLE---MDLPV 93 (584)
Q Consensus 17 gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~---~~iPV 93 (584)
.++||||||++..+..++.+|+..||.|..+.++.+|++.+... .||+||+|+.||+++|++++++++.. +.+||
T Consensus 2 ~~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~--~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~i 79 (127)
T 2jba_A 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEP--WPDLILLAWMLPGGSGIQFIKHLRRESMTRDIPV 79 (127)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHTTCSSS--CCSEEEEESEETTEEHHHHHHHHHTSTTTTTSCE
T ss_pred CcEEEEEcCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhcc--CCCEEEEecCCCCCCHHHHHHHHHhCcccCCCCE
Confidence 36999999999999999999999999999999999999988764 49999999999999999999999754 57999
Q ss_pred EEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 007940 94 IMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 136 (584)
Q Consensus 94 IvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrr 136 (584)
|++|+..+.....++++.||++||.||++.++|..++++++++
T Consensus 80 i~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 122 (127)
T 2jba_A 80 VMLTARGEEEDRVRGLETGADDCITKPFSPKELVARIKAVMRR 122 (127)
T ss_dssp EEEEETTHHHHHHTTCCCSCSEEEEESCCHHHHHHHHHHHHHC
T ss_pred EEEeCCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHhc
Confidence 9999999989999999999999999999999999999988765
No 50
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=99.78 E-value=9.4e-19 Score=154.20 Aligned_cols=119 Identities=20% Similarity=0.263 Sum_probs=108.0
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc-CCCCEEE
Q 007940 18 LRVLVVDDDLAWLKILEKMLKKCSYEVT-TCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLE-MDLPVIM 95 (584)
Q Consensus 18 mrVLIVDDd~~~r~~L~~lL~~~gy~V~-~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~-~~iPVIv 95 (584)
+|||||||++..+..++.+|+..||.+. .+.++.+|++.+.+.. ||+||+|+.||+++|+++++.++.. +.+|||+
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~~--~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ii~ 79 (134)
T 3f6c_A 2 LNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLK--PDIVIIDVDIPGVNGIQVLETLRKRQYSGIIII 79 (134)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHTTEEEEEEESSSTTHHHHHHHHC--CSEEEEETTCSSSCHHHHHHHHHHTTCCSEEEE
T ss_pred eEEEEEcCCHHHHHHHHHHHhhCCcEEEEEcCCHHHHHHHHHhcC--CCEEEEecCCCCCChHHHHHHHHhcCCCCeEEE
Confidence 6999999999999999999999999987 8999999999998765 9999999999999999999999754 6899999
Q ss_pred EEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHhcc
Q 007940 96 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKI 138 (584)
Q Consensus 96 lSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrrk~ 138 (584)
+|+..+.....++++.||++||.||++.++|..+++++++++.
T Consensus 80 ~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~ 122 (134)
T 3f6c_A 80 VSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYC 122 (134)
T ss_dssp EECC---CTHHHHHHTTCSEEEEGGGCTHHHHHHHHHHHTTCC
T ss_pred EeCCCChHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCCCE
Confidence 9999988889999999999999999999999999999987653
No 51
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=99.78 E-value=1e-18 Score=170.96 Aligned_cols=119 Identities=29% Similarity=0.541 Sum_probs=110.9
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCCEEEE
Q 007940 17 GLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMM 96 (584)
Q Consensus 17 gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVIvl 96 (584)
.++||||||++..+..++.+|+..||.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++....+|||++
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~--~dlvilD~~l~~~~g~~~~~~lr~~~~~~ii~l 82 (238)
T 2gwr_A 5 RQRILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELR--PDLVLLDLMLPGMNGIDVCRVLRADSGVPIVML 82 (238)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHC--CSEEEEESSCSSSCHHHHHHHHHTTCCCCEEEE
T ss_pred cCeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHhCCCCcEEEE
Confidence 479999999999999999999999999999999999999998754 999999999999999999999987678999999
Q ss_pred EcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHhc
Q 007940 97 SVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 137 (584)
Q Consensus 97 Sa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrrk 137 (584)
|+..+......+++.||++||.||++.++|..++++++++.
T Consensus 83 t~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~ 123 (238)
T 2gwr_A 83 TAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRN 123 (238)
T ss_dssp EETTCCSCHHHHHHTTCCEEEEESCCHHHHHHHHHHHCCCC
T ss_pred eCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 99998888999999999999999999999999999887553
No 52
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=99.78 E-value=5.4e-18 Score=150.35 Aligned_cols=121 Identities=25% Similarity=0.368 Sum_probs=110.7
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHHh-CCCe-EEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc---cC
Q 007940 15 PAGLRVLVVDDDLAWLKILEKMLKK-CSYE-VTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGL---EM 89 (584)
Q Consensus 15 p~gmrVLIVDDd~~~r~~L~~lL~~-~gy~-V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~---~~ 89 (584)
...++||||||++..+..++.+|+. .||. |..+.++.+|++.+.... ||+||+|+.||+++|+++++.++. .+
T Consensus 6 ~~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~--~dlii~d~~l~~~~g~~~~~~l~~~~~~~ 83 (143)
T 3cnb_A 6 KNDFSILIIEDDKEFADMLTQFLENLFPYAKIKIAYNPFDAGDLLHTVK--PDVVMLDLMMVGMDGFSICHRIKSTPATA 83 (143)
T ss_dssp ---CEEEEECSCHHHHHHHHHHHHHHCTTCEEEEECSHHHHHHHHHHTC--CSEEEEETTCTTSCHHHHHHHHHTSTTTT
T ss_pred cCCceEEEEECCHHHHHHHHHHHHhccCccEEEEECCHHHHHHHHHhcC--CCEEEEecccCCCcHHHHHHHHHhCcccc
Confidence 3568999999999999999999999 8999 889999999999998754 999999999999999999999976 36
Q ss_pred CCCEEEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHhc
Q 007940 90 DLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 137 (584)
Q Consensus 90 ~iPVIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrrk 137 (584)
.+|||++|+..+.....++++.||++||.||++..+|..++++++++.
T Consensus 84 ~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 131 (143)
T 3cnb_A 84 NIIVIAMTGALTDDNVSRIVALGAETCFGKPLNFTLLEKTIKQLVEQK 131 (143)
T ss_dssp TSEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHTT
T ss_pred CCcEEEEeCCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhh
Confidence 899999999999999999999999999999999999999999998764
No 53
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=99.78 E-value=2.3e-18 Score=152.67 Aligned_cols=118 Identities=20% Similarity=0.330 Sum_probs=106.9
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhCC--CeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCCEE
Q 007940 18 LRVLVVDDDLAWLKILEKMLKKCS--YEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGL-EMDLPVI 94 (584)
Q Consensus 18 mrVLIVDDd~~~r~~L~~lL~~~g--y~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~-~~~iPVI 94 (584)
++||||||++..+..++.+|+..+ +.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++. .+.+|||
T Consensus 4 ~~Ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~al~~~~~~~--~dlvilD~~lp~~~g~~~~~~l~~~~~~~~ii 81 (133)
T 3b2n_A 4 TSLIIAEDQNMLRQAMVQLIKLHGDFEILADTDNGLDAMKLIEEYN--PNVVILDIEMPGMTGLEVLAEIRKKHLNIKVI 81 (133)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHHHHC--CSEEEECSSCSSSCHHHHHHHHHHTTCSCEEE
T ss_pred eEEEEECCCHHHHHHHHHHHhhCCCcEEEEEcCCHHHHHHHHhhcC--CCEEEEecCCCCCCHHHHHHHHHHHCCCCcEE
Confidence 589999999999999999999876 56678999999999998754 999999999999999999999975 4689999
Q ss_pred EEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHhc
Q 007940 95 MMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 137 (584)
Q Consensus 95 vlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrrk 137 (584)
++|+..+.....++++.||++||.||++.++|..++++++++.
T Consensus 82 ~ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~ 124 (133)
T 3b2n_A 82 IVTTFKRPGYFEKAVVNDVDAYVLKERSIEELVETINKVNNGE 124 (133)
T ss_dssp EEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHC--
T ss_pred EEecCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999887553
No 54
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.78 E-value=2.5e-18 Score=153.75 Aligned_cols=118 Identities=25% Similarity=0.470 Sum_probs=109.7
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc-CCCCEEEE
Q 007940 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLE-MDLPVIMM 96 (584)
Q Consensus 18 mrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~-~~iPVIvl 96 (584)
.+||||||++..+..++.+|+..||.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++.. +.+|||++
T Consensus 5 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlvllD~~l~~~~g~~l~~~l~~~~~~~~ii~l 82 (137)
T 3cfy_A 5 PRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIERSK--PQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIA 82 (137)
T ss_dssp CEEEEECSCTTHHHHHHHHTTTSSSEEEEESSHHHHHHHHHHHC--CSEEEECSBCSSSBHHHHHHHHHHTTCCCEEEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHhcCceEEEeCCHHHHHHHHHhcC--CCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 48999999999999999999999999999999999999998765 9999999999999999999999754 67899999
Q ss_pred EcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHhc
Q 007940 97 SVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 137 (584)
Q Consensus 97 Sa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrrk 137 (584)
|+..+.....++++.||++||.||++.++|..++++++++.
T Consensus 83 s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 123 (137)
T 3cfy_A 83 TAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKRA 123 (137)
T ss_dssp ESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EecCcHHHHHHHHHCCccEEEeCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999887653
No 55
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=99.78 E-value=2e-18 Score=157.87 Aligned_cols=120 Identities=25% Similarity=0.385 Sum_probs=109.9
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCCE
Q 007940 16 AGLRVLVVDDDLAWLKILEKMLKKCSYEVT-TCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGL-EMDLPV 93 (584)
Q Consensus 16 ~gmrVLIVDDd~~~r~~L~~lL~~~gy~V~-~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~-~~~iPV 93 (584)
..++||||||++..+..++.+|+..||.|. .+.++.+|++.+.+....||+||+|+.||+++|+++++.|+. .+.+||
T Consensus 35 ~~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~l~~~~~~~dliilD~~l~~~~g~~~~~~lr~~~~~~~i 114 (157)
T 3hzh_A 35 IPFNVLIVDDSVFTVKQLTQIFTSEGFNIIDTAADGEEAVIKYKNHYPNIDIVTLXITMPKMDGITCLSNIMEFDKNARV 114 (157)
T ss_dssp EECEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGCCEEEECSSCSSSCHHHHHHHHHHHCTTCCE
T ss_pred CceEEEEEeCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCCCCCEEEEeccCCCccHHHHHHHHHhhCCCCcE
Confidence 347999999999999999999999999998 999999999999876213899999999999999999999975 468999
Q ss_pred EEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHH
Q 007940 94 IMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFR 135 (584)
Q Consensus 94 IvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlr 135 (584)
|++|+..+.+...+++++||++||.||+...+|..+++++++
T Consensus 115 i~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~ 156 (157)
T 3hzh_A 115 IMISALGKEQLVKDCLIKGAKTFIVKPLDRAKVLQRVMSVFV 156 (157)
T ss_dssp EEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTTC
T ss_pred EEEeccCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999988753
No 56
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.78 E-value=4.2e-18 Score=151.79 Aligned_cols=123 Identities=20% Similarity=0.374 Sum_probs=111.9
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHhcC--------CCceEEEEecCCCCCCHHHHHHH
Q 007940 15 PAGLRVLVVDDDLAWLKILEKMLKKCSY--EVTTCGLARDALSLLRERK--------DGYDIVISDVNMPDMDGFKLLEH 84 (584)
Q Consensus 15 p~gmrVLIVDDd~~~r~~L~~lL~~~gy--~V~~a~~~~eAL~~L~~~~--------~~pDLVIlDi~MPdmdGlELL~~ 84 (584)
..+++||||||++..+..++.+|+..|+ .|..+.++.+|++.+.... ..||+||+|+.||+++|+++++.
T Consensus 4 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~ 83 (149)
T 1k66_A 4 NATQPLLVVEDSDEDFSTFQRLLQREGVVNPIYRCITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNLPGTDGREVLQE 83 (149)
T ss_dssp CTTSCEEEECCCHHHHHHHHHHHHHTTBCSCEEEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCCSSSCHHHHHHH
T ss_pred CCCccEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHHhcccccCcccCCCCcEEEEECCCCCCCHHHHHHH
Confidence 3568999999999999999999999998 8999999999999998611 34999999999999999999999
Q ss_pred Hhcc---CCCCEEEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHhc
Q 007940 85 VGLE---MDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 137 (584)
Q Consensus 85 Ir~~---~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrrk 137 (584)
++.. +.+|||++|+..+.....++++.||++||.||++..+|..++++++++.
T Consensus 84 l~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 139 (149)
T 1k66_A 84 IKQDEVLKKIPVVIMTTSSNPKDIEICYSYSISSYIVKPLEIDRLTETVQTFIKYW 139 (149)
T ss_dssp HTTSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHH
T ss_pred HHhCcccCCCeEEEEeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHh
Confidence 9764 5789999999999999999999999999999999999999999988654
No 57
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=99.78 E-value=3.5e-18 Score=152.10 Aligned_cols=122 Identities=20% Similarity=0.279 Sum_probs=110.3
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHhcC---CCceEEEEecCCCCCCHHHHHHHHhc---
Q 007940 16 AGLRVLVVDDDLAWLKILEKMLKKCSY--EVTTCGLARDALSLLRERK---DGYDIVISDVNMPDMDGFKLLEHVGL--- 87 (584)
Q Consensus 16 ~gmrVLIVDDd~~~r~~L~~lL~~~gy--~V~~a~~~~eAL~~L~~~~---~~pDLVIlDi~MPdmdGlELL~~Ir~--- 87 (584)
..++||||||++..+..++.+|+..|+ .|..+.++.+|++.+.+.. ..||+||+|+.||+++|+++++.|+.
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~ 87 (146)
T 3ilh_A 8 KIDSVLLIDDDDIVNFLNTTIIRMTHRVEEIQSVTSGNAAINKLNELYAAGRWPSIICIDINMPGINGWELIDLFKQHFQ 87 (146)
T ss_dssp CEEEEEEECSCHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHTSSCCCSEEEEESSCSSSCHHHHHHHHHHHCG
T ss_pred ccceEEEEeCCHHHHHHHHHHHHhcCCCeeeeecCCHHHHHHHHHHhhccCCCCCEEEEcCCCCCCCHHHHHHHHHHhhh
Confidence 457999999999999999999999998 8999999999999998711 23999999999999999999999975
Q ss_pred --cCCCCEEEEEcCCChHHHHhhhhcC-CceEEeCCCCHHHHHHHHHHHHHhc
Q 007940 88 --EMDLPVIMMSVDGETSRVMKGVQHG-ACDYLLKPIRMKELRNIWQHVFRKK 137 (584)
Q Consensus 88 --~~~iPVIvlSa~~d~~~~~~aL~~G-AdDYL~KP~~~~eL~~aI~~vlrrk 137 (584)
.+.+|||++|+..+.....+++..| |++||.||++.++|..++++.....
T Consensus 88 ~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~~~~~ 140 (146)
T 3ilh_A 88 PMKNKSIVCLLSSSLDPRDQAKAEASDWVDYYVSKPLTANALNNLYNKVLNEG 140 (146)
T ss_dssp GGTTTCEEEEECSSCCHHHHHHHHHCSSCCEEECSSCCHHHHHHHHHHHHCC-
T ss_pred hccCCCeEEEEeCCCChHHHHHHHhcCCcceeeeCCCCHHHHHHHHHHHHHhc
Confidence 4689999999999999999999999 9999999999999999999887543
No 58
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=99.78 E-value=3.4e-18 Score=154.70 Aligned_cols=122 Identities=22% Similarity=0.348 Sum_probs=111.4
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHHhCC--CeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCC
Q 007940 15 PAGLRVLVVDDDLAWLKILEKMLKKCS--YEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGL-EMDL 91 (584)
Q Consensus 15 p~gmrVLIVDDd~~~r~~L~~lL~~~g--y~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~-~~~i 91 (584)
...+|||||||++..+..++.+|+..+ +.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.|+. .+.+
T Consensus 18 ~~m~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~--~dlii~D~~l~~~~g~~~~~~l~~~~~~~ 95 (150)
T 4e7p_A 18 GSHMKVLVAEDQSMLRDAMCQLLTLQPDVESVLQAKNGQEAIQLLEKES--VDIAILDVEMPVKTGLEVLEWIRSEKLET 95 (150)
T ss_dssp --CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHTTSC--CSEEEECSSCSSSCHHHHHHHHHHTTCSC
T ss_pred CCccEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHhhccC--CCEEEEeCCCCCCcHHHHHHHHHHhCCCC
Confidence 445899999999999999999999887 78889999999999998754 999999999999999999999975 4689
Q ss_pred CEEEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHhcc
Q 007940 92 PVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKI 138 (584)
Q Consensus 92 PVIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrrk~ 138 (584)
|||++|+..+.+...++++.||++||.||++.++|..+++++++++.
T Consensus 96 ~ii~ls~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~~ 142 (150)
T 4e7p_A 96 KVVVVTTFKRAGYFERAVKAGVDAYVLKERSIADLMQTLHTVLEGRK 142 (150)
T ss_dssp EEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHTTCC
T ss_pred eEEEEeCCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHcCCE
Confidence 99999999999999999999999999999999999999999987653
No 59
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=99.77 E-value=1.4e-18 Score=155.97 Aligned_cols=123 Identities=17% Similarity=0.291 Sum_probs=110.8
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHHhCC-CeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCC
Q 007940 15 PAGLRVLVVDDDLAWLKILEKMLKKCS-YEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGL-EMDLP 92 (584)
Q Consensus 15 p~gmrVLIVDDd~~~r~~L~~lL~~~g-y~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~-~~~iP 92 (584)
..+.+||||||++..+..++.+|+..| |.|..+.++.+++..+.+....||+||+|+.||+++|+++++.++. .+.+|
T Consensus 18 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ 97 (146)
T 4dad_A 18 QGMINILVASEDASRLAHLARLVGDAGRYRVTRTVGRAAQIVQRTDGLDAFDILMIDGAALDTAELAAIEKLSRLHPGLT 97 (146)
T ss_dssp GGGCEEEEECSCHHHHHHHHHHHHHHCSCEEEEECCCHHHHTTCHHHHTTCSEEEEECTTCCHHHHHHHHHHHHHCTTCE
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHhhCCCeEEEEeCCHHHHHHHHHhcCCCCCEEEEeCCCCCccHHHHHHHHHHhCCCCc
Confidence 566899999999999999999999999 9999999999888876542023999999999999999999999965 46899
Q ss_pred EEEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHhc
Q 007940 93 VIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 137 (584)
Q Consensus 93 VIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrrk 137 (584)
||++|+..+.+...+++++||++||.||+..++|..+++++++++
T Consensus 98 ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~ 142 (146)
T 4dad_A 98 CLLVTTDASSQTLLDAMRAGVRDVLRWPLEPRALDDALKRAAAQC 142 (146)
T ss_dssp EEEEESCCCHHHHHHHHTTTEEEEEESSCCHHHHHHHHHHHHHTC
T ss_pred EEEEeCCCCHHHHHHHHHhCCceeEcCCCCHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999998764
No 60
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=99.77 E-value=2.5e-18 Score=154.18 Aligned_cols=121 Identities=21% Similarity=0.389 Sum_probs=111.8
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc---cCCC
Q 007940 15 PAGLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGL---EMDL 91 (584)
Q Consensus 15 p~gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~---~~~i 91 (584)
.++++||||||++..+..++.+|+..||.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.|+. .+.+
T Consensus 6 ~~~~~iLivd~~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~ 83 (147)
T 2zay_A 6 GKWWRIMLVDTQLPALAASISALSQEGFDIIQCGNAIEAVPVAVKTH--PHLIITEANMPKISGMDLFNSLKKNPQTASI 83 (147)
T ss_dssp --CEEEEEECTTGGGGHHHHHHHHHHTEEEEEESSHHHHHHHHHHHC--CSEEEEESCCSSSCHHHHHHHHHTSTTTTTS
T ss_pred CCCceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHHcCC--CCEEEEcCCCCCCCHHHHHHHHHcCcccCCC
Confidence 35689999999999999999999999999999999999999998865 999999999999999999999975 4689
Q ss_pred CEEEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHhc
Q 007940 92 PVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 137 (584)
Q Consensus 92 PVIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrrk 137 (584)
|||++|+..+.....++++.||++||.||++..+|..++++++++.
T Consensus 84 pii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~ 129 (147)
T 2zay_A 84 PVIALSGRATAKEEAQLLDMGFIDFIAKPVNAIRLSARIKRVLKLL 129 (147)
T ss_dssp CEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988654
No 61
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=99.77 E-value=3.7e-18 Score=171.11 Aligned_cols=121 Identities=27% Similarity=0.378 Sum_probs=110.9
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc---CCCC
Q 007940 16 AGLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLE---MDLP 92 (584)
Q Consensus 16 ~gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~---~~iP 92 (584)
..++||||||++..+..+...|+..||.|..+.++.+|++.+... ..||+||+|+.||+|||++++++|+.. ..+|
T Consensus 123 ~~~~ILivDD~~~~~~~l~~~L~~~~~~v~~a~~~~eal~~l~~~-~~~dlvllD~~mP~~dG~~l~~~lr~~~~~~~~~ 201 (259)
T 3luf_A 123 QQIEVLVVDDSRTSRHRTMAQLRKQLLQVHEASHAREALATLEQH-PAIRLVLVDYYMPEIDGISLVRMLRERYSKQQLA 201 (259)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHC-TTEEEEEECSCCSSSCHHHHHHHHHHHCCTTTSE
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhcC-CCCCEEEEcCCCCCCCHHHHHHHHHhccCCCCCe
Confidence 468999999999999999999999999999999999999999764 238999999999999999999999754 3689
Q ss_pred EEEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHhc
Q 007940 93 VIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 137 (584)
Q Consensus 93 VIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrrk 137 (584)
||++|+..+.....+++++||+|||.||++.++|..++++++++.
T Consensus 202 ii~~s~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~~~ 246 (259)
T 3luf_A 202 IIGISVSDKRGLSARYLKQGANDFLNQPFEPEELQCRVSHNLEAL 246 (259)
T ss_dssp EEEEECSSSSSHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEEEEccCCHHHHHHHHhcChhheEcCCCCHHHHHHHHHHHHHhH
Confidence 999999999999999999999999999999999999999988653
No 62
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=99.77 E-value=3.1e-18 Score=152.32 Aligned_cols=121 Identities=21% Similarity=0.356 Sum_probs=111.5
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc---cCCC
Q 007940 15 PAGLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGL---EMDL 91 (584)
Q Consensus 15 p~gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~---~~~i 91 (584)
...++||||||++..+..++.+|+..||+|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++. .+.+
T Consensus 5 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~ 82 (142)
T 3cg4_A 5 EHKGDVMIVDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLLKKGF--SGVVLLDIMMPGMDGWDTIRAILDNSLEQGI 82 (142)
T ss_dssp -CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTCC--CEEEEEESCCSSSCHHHHHHHHHHTTCCTTE
T ss_pred CCCCeEEEEcCCHHHHHHHHHHHHHCCeEEEEeCCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHhhcccCCC
Confidence 45789999999999999999999999999999999999999998754 999999999999999999999975 3678
Q ss_pred CEEEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHhc
Q 007940 92 PVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 137 (584)
Q Consensus 92 PVIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrrk 137 (584)
|||++|+..+.....++++.||++||.||++.++|..++++++++.
T Consensus 83 pii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 128 (142)
T 3cg4_A 83 AIVMLTAKNAPDAKMIGLQEYVVDYITKPFDNEDLIEKTTFFMGFV 128 (142)
T ss_dssp EEEEEECTTCCCCSSTTGGGGEEEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHhcCccEEEeCCCCHHHHHHHHHHHHHHH
Confidence 9999999988888899999999999999999999999999988654
No 63
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=99.77 E-value=2.4e-18 Score=153.31 Aligned_cols=118 Identities=21% Similarity=0.321 Sum_probs=100.8
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc---CCCCE
Q 007940 17 GLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLE---MDLPV 93 (584)
Q Consensus 17 gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~---~~iPV 93 (584)
.++||||||++..+..++.+|+.. |.|..+.++.+|++.+.+.. ||+||+|+.||+++|+++++.++.. +.+||
T Consensus 3 ~~~iLivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~i 79 (140)
T 3n53_A 3 LKKILIIDQQDFSRIELKNFLDSE-YLVIESKNEKEALEQIDHHH--PDLVILDMDIIGENSPNLCLKLKRSKGLKNVPL 79 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTT-SEEEEESSHHHHHHHHHHHC--CSEEEEETTC------CHHHHHHTSTTCTTCCE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhc-ceEEEeCCHHHHHHHHhcCC--CCEEEEeCCCCCCcHHHHHHHHHcCcccCCCCE
Confidence 469999999999999999999988 99999999999999998865 9999999999999999999999754 68999
Q ss_pred EEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHhc
Q 007940 94 IMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 137 (584)
Q Consensus 94 IvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrrk 137 (584)
|++|+..+.+...++++.||++||.||++..+|..+++++++++
T Consensus 80 i~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 123 (140)
T 3n53_A 80 ILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQ 123 (140)
T ss_dssp EEEECC----CTTTTTTCCCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEEecCCCHHHHHHHHhcCCCeeeeCCCCHHHHHHHHHHHHhhH
Confidence 99999988888999999999999999999999999999998765
No 64
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=99.77 E-value=6.7e-18 Score=149.51 Aligned_cols=121 Identities=20% Similarity=0.309 Sum_probs=111.7
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEecCCC-CCCHHHHHHHHhccCCCC
Q 007940 15 PAGLRVLVVDDDLAWLKILEKMLKKCSYEVT-TCGLARDALSLLRERKDGYDIVISDVNMP-DMDGFKLLEHVGLEMDLP 92 (584)
Q Consensus 15 p~gmrVLIVDDd~~~r~~L~~lL~~~gy~V~-~a~~~~eAL~~L~~~~~~pDLVIlDi~MP-dmdGlELL~~Ir~~~~iP 92 (584)
...++||||||++..+..++.+|+..||.|. ++.++.+|++.+.... ||+||+|+.|| +++|+++++.++..+.+|
T Consensus 7 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~~--~dlii~d~~~~~~~~g~~~~~~l~~~~~~~ 84 (140)
T 3cg0_A 7 DDLPGVLIVEDGRLAAATLRIQLESLGYDVLGVFDNGEEAVRCAPDLR--PDIALVDIMLCGALDGVETAARLAAGCNLP 84 (140)
T ss_dssp -CCCEEEEECCBHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHC--CSEEEEESSCCSSSCHHHHHHHHHHHSCCC
T ss_pred CCCceEEEEECCHHHHHHHHHHHHHCCCeeEEEECCHHHHHHHHHhCC--CCEEEEecCCCCCCCHHHHHHHHHhCCCCC
Confidence 3568999999999999999999999999999 5999999999998765 99999999999 799999999997558899
Q ss_pred EEEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHhc
Q 007940 93 VIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 137 (584)
Q Consensus 93 VIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrrk 137 (584)
||++|+..+.....++++.||++||.||++.++|..++++++++.
T Consensus 85 ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 129 (140)
T 3cg0_A 85 IIFITSSQDVETFQRAKRVNPFGYLAKPVAADTLHRSIEMAIHKK 129 (140)
T ss_dssp EEEEECCCCHHHHHHHHTTCCSEEEEESCCHHHHHHHHHHHHHHH
T ss_pred EEEEecCCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999988764
No 65
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=99.77 E-value=5.7e-18 Score=153.23 Aligned_cols=122 Identities=25% Similarity=0.340 Sum_probs=110.8
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHHhCCCe--EEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCC
Q 007940 15 PAGLRVLVVDDDLAWLKILEKMLKKCSYE--VTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGL-EMDL 91 (584)
Q Consensus 15 p~gmrVLIVDDd~~~r~~L~~lL~~~gy~--V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~-~~~i 91 (584)
..+.|||||||++..+..++.+|+..|+. |..+.++.+|++.+.+.. ||+||+|+.||+++|+++++.++. .+.+
T Consensus 13 ~~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~--~dlii~d~~l~~~~g~~~~~~l~~~~~~~ 90 (152)
T 3eul_A 13 PEKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHL--PDVALLDYRMPGMDGAQVAAAVRSYELPT 90 (152)
T ss_dssp -CCEEEEEECSSHHHHHHHHHHHHHHSSEEEEEEESSHHHHHHHHHHHC--CSEEEEETTCSSSCHHHHHHHHHHTTCSC
T ss_pred CceEEEEEEcCCHHHHHHHHHHHhhCCCeEEEEEeCCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCC
Confidence 56789999999999999999999998854 558999999999998865 999999999999999999999975 4688
Q ss_pred CEEEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHhcc
Q 007940 92 PVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKI 138 (584)
Q Consensus 92 PVIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrrk~ 138 (584)
|||++|+..+.....++++.||++||.||+..++|..+++++++++.
T Consensus 91 ~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~~ 137 (152)
T 3eul_A 91 RVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAKGRD 137 (152)
T ss_dssp EEEEEESCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHCC-
T ss_pred eEEEEEccCCHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHcCCe
Confidence 99999999999999999999999999999999999999999987653
No 66
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=99.77 E-value=7.2e-18 Score=148.13 Aligned_cols=121 Identities=26% Similarity=0.391 Sum_probs=102.7
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccC--CCC
Q 007940 15 PAGLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEM--DLP 92 (584)
Q Consensus 15 p~gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~--~iP 92 (584)
..+++||||||++..+..++.+|+..||.|..+.++.+|++.+.+.. ||+||+|+.||+++|+++++.++... ..|
T Consensus 4 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~ 81 (132)
T 3lte_A 4 KQSKRILVVDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKLSTFE--PAIMTLDLSMPKLDGLDVIRSLRQNKVANQP 81 (132)
T ss_dssp ---CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTC--CSEEEEESCBTTBCHHHHHHHHHTTTCSSCC
T ss_pred CCCccEEEEECCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhcC--CCEEEEecCCCCCCHHHHHHHHHhcCccCCC
Confidence 34679999999999999999999999999999999999999998754 99999999999999999999997653 345
Q ss_pred EEEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHhc
Q 007940 93 VIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 137 (584)
Q Consensus 93 VIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrrk 137 (584)
+|++++..+.....++++.||++||.||++.++|..++++.....
T Consensus 82 ~ii~~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 126 (132)
T 3lte_A 82 KILVVSGLDKAKLQQAVTEGADDYLEKPFDNDALLDRIHDLVNEG 126 (132)
T ss_dssp EEEEECCSCSHHHHHHHHHTCCEEECSSCCHHHHHHHHHHHHC--
T ss_pred eEEEEeCCChHHHHHHHHhChHHHhhCCCCHHHHHHHHHHHcCCC
Confidence 555555444557889999999999999999999999999887543
No 67
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=99.77 E-value=6.4e-18 Score=150.75 Aligned_cols=118 Identities=28% Similarity=0.449 Sum_probs=106.2
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc---CCCCEE
Q 007940 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLE---MDLPVI 94 (584)
Q Consensus 18 mrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~---~~iPVI 94 (584)
++||||||++..+..++.+|+..||.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.|+.. +.+|||
T Consensus 4 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii 81 (138)
T 3c3m_A 4 YTILVVDDSPMIVDVFVTMLERGGYRPITAFSGEECLEALNATP--PDLVLLDIMMEPMDGWETLERIKTDPATRDIPVL 81 (138)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSC--CSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHhccC--CCEEEEeCCCCCCCHHHHHHHHHcCcccCCCCEE
Confidence 59999999999999999999999999999999999999998754 9999999999999999999999753 478999
Q ss_pred EEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHhc
Q 007940 95 MMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 137 (584)
Q Consensus 95 vlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrrk 137 (584)
++|+.........++.+||++||.||++.++|..+++++++++
T Consensus 82 ~ls~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~~~~~ 124 (138)
T 3c3m_A 82 MLTAKPLTPEEANEYGSYIEDYILKPTTHHQLYEAIEHVLARR 124 (138)
T ss_dssp EEESSCCCHHHHHHTTTTCSEEEECCCHHHHHHHHHHHHHSCC
T ss_pred EEECCCChHHHHHHhhcCHhheEeCCCCHHHHHHHHHHHHHHh
Confidence 9999877666667778889999999999999999999887543
No 68
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=99.77 E-value=4.8e-18 Score=169.38 Aligned_cols=121 Identities=28% Similarity=0.458 Sum_probs=112.3
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc-CCCCE
Q 007940 15 PAGLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLE-MDLPV 93 (584)
Q Consensus 15 p~gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~-~~iPV 93 (584)
..+++||||||++..+..++.+|+..||.|..+.++.+|++.+.... ||+||+|+.||+|+|+++++.|+.. +.+||
T Consensus 127 ~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~~--~dlvl~D~~mp~~~G~~l~~~ir~~~~~~pi 204 (254)
T 2ayx_A 127 NDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNH--IDIVLSDVNMPNMDGYRLTQRIRQLGLTLPV 204 (254)
T ss_dssp CCCCEEEEEESSHHHHHHHHHHHHHHTSEEEEECCSHHHHHHHHHSC--CSEEEEEESSCSSCCHHHHHHHHHHHCCSCE
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhCC--CCEEEEcCCCCCCCHHHHHHHHHhcCCCCcE
Confidence 45689999999999999999999999999999999999999998754 9999999999999999999999753 68999
Q ss_pred EEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHhc
Q 007940 94 IMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 137 (584)
Q Consensus 94 IvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrrk 137 (584)
|++|+..+.+...++++.||++||.||++.++|..++++++++.
T Consensus 205 I~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~~ 248 (254)
T 2ayx_A 205 IGVTANALAEEKQRCLESGMDSCLSKPVTLDVIKQTLTLYAERV 248 (254)
T ss_dssp EEEESSTTSHHHHHHHHCCCEEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHHcCCceEEECCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999887654
No 69
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=99.76 E-value=8.9e-18 Score=152.07 Aligned_cols=122 Identities=25% Similarity=0.491 Sum_probs=110.8
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCCE
Q 007940 15 PAGLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGL-EMDLPV 93 (584)
Q Consensus 15 p~gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~-~~~iPV 93 (584)
...++||||||++..+..++.+|+. +|.|..+.++.+|++.+.+.. .||+||+|+.||+++|+++++.++. .+.+||
T Consensus 2 ~~~~~ILivdd~~~~~~~l~~~L~~-~~~v~~~~~~~~a~~~l~~~~-~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~i 79 (151)
T 3kcn_A 2 SLNERILLVDDDYSLLNTLKRNLSF-DFEVTTCESGPEALACIKKSD-PFSVIMVDMRMPGMEGTEVIQKARLISPNSVY 79 (151)
T ss_dssp -CCCEEEEECSCHHHHHHHHHHHTT-TSEEEEESSHHHHHHHHHHSC-CCSEEEEESCCSSSCHHHHHHHHHHHCSSCEE
T ss_pred CCCCeEEEEeCCHHHHHHHHHHhcc-CceEEEeCCHHHHHHHHHcCC-CCCEEEEeCCCCCCcHHHHHHHHHhcCCCcEE
Confidence 3467999999999999999999986 899999999999999998743 3699999999999999999999975 468999
Q ss_pred EEEEcCCChHHHHhhhhcC-CceEEeCCCCHHHHHHHHHHHHHhcc
Q 007940 94 IMMSVDGETSRVMKGVQHG-ACDYLLKPIRMKELRNIWQHVFRKKI 138 (584)
Q Consensus 94 IvlSa~~d~~~~~~aL~~G-AdDYL~KP~~~~eL~~aI~~vlrrk~ 138 (584)
|++|+..+.....++++.| |++||.||++.++|..++++++++..
T Consensus 80 i~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~l~~~~ 125 (151)
T 3kcn_A 80 LMLTGNQDLTTAMEAVNEGQVFRFLNKPCQMSDIKAAINAGIKQYD 125 (151)
T ss_dssp EEEECGGGHHHHHHHHHHTCCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHHcCCeeEEEcCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999 99999999999999999999987653
No 70
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=99.76 E-value=3.7e-19 Score=157.95 Aligned_cols=119 Identities=20% Similarity=0.149 Sum_probs=108.7
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHHhCC-CeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc-CCCCE
Q 007940 16 AGLRVLVVDDDLAWLKILEKMLKKCS-YEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLE-MDLPV 93 (584)
Q Consensus 16 ~gmrVLIVDDd~~~r~~L~~lL~~~g-y~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~-~~iPV 93 (584)
..++||||||++..+..++.+|+..| |.|.++.++.+|++.+... .||+||+|+.||+++|+++++.++.. +.+||
T Consensus 13 ~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~l~~~--~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~i 90 (135)
T 3snk_A 13 KRKQVALFSSDPNFKRDVATRLDALAIYDVRVSETDDFLKGPPADT--RPGIVILDLGGGDLLGKPGIVEARALWATVPL 90 (135)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHHHTSSEEEEEECGGGGGGCCCTTC--CCSEEEEEEETTGGGGSTTHHHHHGGGTTCCE
T ss_pred CCcEEEEEcCCHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHhcc--CCCEEEEeCCCCCchHHHHHHHHHhhCCCCcE
Confidence 45799999999999999999999999 9999999999999988764 49999999999999999999999754 58999
Q ss_pred EEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 007940 94 IMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 136 (584)
Q Consensus 94 IvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrr 136 (584)
|++|+..+.+...++++.||++||.||++..+|..++++++++
T Consensus 91 i~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 133 (135)
T 3snk_A 91 IAVSDELTSEQTRVLVRMNASDWLHKPLDGKELLNAVTFHDTG 133 (135)
T ss_dssp EEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTC--
T ss_pred EEEeCCCCHHHHHHHHHcCcHhhccCCCCHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999887643
No 71
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=99.76 E-value=4.1e-18 Score=162.30 Aligned_cols=120 Identities=25% Similarity=0.431 Sum_probs=110.6
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc-CCCCEE
Q 007940 16 AGLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLE-MDLPVI 94 (584)
Q Consensus 16 ~gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~-~~iPVI 94 (584)
.+.+||||||++..+..++.+|+..||.|..+.++.+|++.+... .||+||+|+.||+++|+++++.++.. +.+|||
T Consensus 3 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii 80 (208)
T 1yio_A 3 AKPTVFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLEHRRPE--QHGCLVLDMRMPGMSGIELQEQLTAISDGIPIV 80 (208)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHCCTT--SCEEEEEESCCSSSCHHHHHHHHHHTTCCCCEE
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHhCCceEEEcCCHHHHHHhhhcc--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEE
Confidence 456999999999999999999999999999999999999988764 49999999999999999999999754 689999
Q ss_pred EEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHhc
Q 007940 95 MMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 137 (584)
Q Consensus 95 vlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrrk 137 (584)
++|+..+.....++++.||++||.||++..+|..++++++++.
T Consensus 81 ~ls~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~ 123 (208)
T 1yio_A 81 FITAHGDIPMTVRAMKAGAIEFLPKPFEEQALLDAIEQGLQLN 123 (208)
T ss_dssp EEESCTTSCCCHHHHHTTEEEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHhhh
Confidence 9999998888999999999999999999999999999988654
No 72
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=99.76 E-value=8.3e-18 Score=144.50 Aligned_cols=113 Identities=25% Similarity=0.442 Sum_probs=102.6
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc-CCCCEEEE
Q 007940 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLE-MDLPVIMM 96 (584)
Q Consensus 18 mrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~-~~iPVIvl 96 (584)
++||||||++..+..++..|+..||.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++.. +.+|||++
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~--~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~ 79 (116)
T 3a10_A 2 KRILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKFFSGN--YDLVILDIEMPGISGLEVAGEIRKKKKDAKIILL 79 (116)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSC--CSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEE
T ss_pred cEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCC--CCEEEEECCCCCCCHHHHHHHHHccCCCCeEEEE
Confidence 48999999999999999999999999999999999999998754 9999999999999999999999754 67899999
Q ss_pred EcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHH
Q 007940 97 SVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVF 134 (584)
Q Consensus 97 Sa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vl 134 (584)
|+..+.. ..+++.||++||.||++.++|..++++++
T Consensus 80 s~~~~~~--~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~ 115 (116)
T 3a10_A 80 TAYSHYR--SDMSSWAADEYVVKSFNFDELKEKVKKLL 115 (116)
T ss_dssp ESCGGGG--GCGGGGGSSEEEECCSSTHHHHHHHHHHT
T ss_pred ECCcchH--HHHHhccccceEECCCCHHHHHHHHHHHh
Confidence 9876654 78899999999999999999999887754
No 73
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=99.76 E-value=7.4e-18 Score=149.41 Aligned_cols=118 Identities=22% Similarity=0.371 Sum_probs=105.2
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cC----C
Q 007940 16 AGLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGL-EM----D 90 (584)
Q Consensus 16 ~gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~-~~----~ 90 (584)
.+++||||||++..+..++.+|+..||.|..+.++.+|++.+... +|+||+|+.||+++|+++++.++. .+ .
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~---~dlvllD~~lp~~~g~~~~~~l~~~~~~~~~~ 82 (136)
T 1dcf_A 6 TGLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVVSHE---HKVVFMDVCMPGVENYQIALRIHEKFTKQRHQ 82 (136)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHCCTT---CSEEEEECCSSTTTTTHHHHHHHHHHC-CCSC
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcc---CCEEEEeCCCCCCcHHHHHHHHHHhhhhccCC
Confidence 578999999999999999999999999999999999999987542 499999999999999999999963 22 3
Q ss_pred C-CEEEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 007940 91 L-PVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 136 (584)
Q Consensus 91 i-PVIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrr 136 (584)
. +||++|+..+.....++++.||++||.||++.++|..++++++++
T Consensus 83 ~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~ 129 (136)
T 1dcf_A 83 RPLLVALSGNTDKSTKEKCMSFGLDGVLLKPVSLDNIRDVLSDLLEP 129 (136)
T ss_dssp CCEEEEEESCCSHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHSC
T ss_pred CceEEEEeCCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhch
Confidence 4 478899999988899999999999999999999999999988754
No 74
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=99.76 E-value=1.4e-17 Score=150.90 Aligned_cols=121 Identities=26% Similarity=0.419 Sum_probs=111.9
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc-CCCCE
Q 007940 15 PAGLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLE-MDLPV 93 (584)
Q Consensus 15 p~gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~-~~iPV 93 (584)
..+++||||||++..+..++.+|+..||.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++.. +.+||
T Consensus 5 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~i 82 (154)
T 2rjn_A 5 YKNYTVMLVDDEQPILNSLKRLIKRLGCNIITFTSPLDALEALKGTS--VQLVISDMRMPEMGGEVFLEQVAKSYPDIER 82 (154)
T ss_dssp CSCCEEEEECSCHHHHHHHHHHHHTTTCEEEEESCHHHHHHHHTTSC--CSEEEEESSCSSSCHHHHHHHHHHHCTTSEE
T ss_pred CCCCeEEEEcCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCC--CCEEEEecCCCCCCHHHHHHHHHHhCCCCcE
Confidence 45789999999999999999999999999999999999999998754 9999999999999999999999754 68999
Q ss_pred EEEEcCCChHHHHhhhhcC-CceEEeCCCCHHHHHHHHHHHHHhc
Q 007940 94 IMMSVDGETSRVMKGVQHG-ACDYLLKPIRMKELRNIWQHVFRKK 137 (584)
Q Consensus 94 IvlSa~~d~~~~~~aL~~G-AdDYL~KP~~~~eL~~aI~~vlrrk 137 (584)
|++|+..+.....++++.| |++||.||++..+|..++++++++.
T Consensus 83 i~ls~~~~~~~~~~~~~~g~~~~~l~kP~~~~~L~~~i~~~~~~~ 127 (154)
T 2rjn_A 83 VVISGYADAQATIDAVNRGKISRFLLKPWEDEDVFKVVEKGLQLA 127 (154)
T ss_dssp EEEECGGGHHHHHHHHHTTCCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEEecCCCHHHHHHHHhccchheeeeCCCCHHHHHHHHHHHHHHH
Confidence 9999999888999999998 9999999999999999999988654
No 75
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=99.76 E-value=8.6e-18 Score=149.76 Aligned_cols=119 Identities=25% Similarity=0.401 Sum_probs=110.1
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc-CCCCEE
Q 007940 16 AGLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLE-MDLPVI 94 (584)
Q Consensus 16 ~gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~-~~iPVI 94 (584)
..++||||||++..+..++.+|+..||+|..+.++.+|++.+.... ||+||+|+ ||+++|+++++.++.. +.+|||
T Consensus 3 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlvi~d~-~~~~~g~~~~~~l~~~~~~~pii 79 (142)
T 2qxy_A 3 LTPTVMVVDESRITFLAVKNALEKDGFNVIWAKNEQEAFTFLRREK--IDLVFVDV-FEGEESLNLIRRIREEFPDTKVA 79 (142)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHGGGTCEEEEESSHHHHHHHHTTSC--CSEEEEEC-TTTHHHHHHHHHHHHHCTTCEEE
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhccC--CCEEEEeC-CCCCcHHHHHHHHHHHCCCCCEE
Confidence 4679999999999999999999999999999999999999998754 99999999 9999999999999754 579999
Q ss_pred EEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHhc
Q 007940 95 MMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 137 (584)
Q Consensus 95 vlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrrk 137 (584)
++|+..+.+...++++.||++||.||++..+|..+++++++++
T Consensus 80 ~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 122 (142)
T 2qxy_A 80 VLSAYVDKDLIINSVKAGAVDYILKPFRLDYLLERVKKIISST 122 (142)
T ss_dssp EEESCCCHHHHHHHHHHTCSCEEESSCCHHHHHHHHHHHHHC-
T ss_pred EEECCCCHHHHHHHHHCCcceeEeCCCCHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999998764
No 76
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=99.75 E-value=1.8e-17 Score=146.70 Aligned_cols=119 Identities=23% Similarity=0.389 Sum_probs=110.0
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCC-----CCCHHHHHHHHhcc-CC
Q 007940 17 GLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMP-----DMDGFKLLEHVGLE-MD 90 (584)
Q Consensus 17 gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MP-----dmdGlELL~~Ir~~-~~ 90 (584)
.++||||||++..+..++.+|+..||.|..+.++.+|++.+.... ||+||+|+.|| +++|+++++.++.. +.
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~~~ 80 (140)
T 2qr3_A 3 LGTIIIVDDNKGVLTAVQLLLKNHFSKVITLSSPVSLSTVLREEN--PEVVLLDMNFTSGINNGNEGLFWLHEIKRQYRD 80 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTSSEEEEECCHHHHHHHHHHSC--EEEEEEETTTTC-----CCHHHHHHHHHHHCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHHcCC--CCEEEEeCCcCCCCCCCccHHHHHHHHHhhCcC
Confidence 479999999999999999999999999999999999999998754 99999999999 99999999999754 68
Q ss_pred CCEEEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHhc
Q 007940 91 LPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 137 (584)
Q Consensus 91 iPVIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrrk 137 (584)
+|||++|+..+.....++++.||++||.||++..+|..+++++++++
T Consensus 81 ~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~ 127 (140)
T 2qr3_A 81 LPVVLFTAYADIDLAVRGIKEGASDFVVKPWDNQKLLETLLNAASQA 127 (140)
T ss_dssp CCEEEEEEGGGHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTCC
T ss_pred CCEEEEECCCCHHHHHHHHHcCchheeeCCCCHHHHHHHHHHHHHhc
Confidence 99999999999899999999999999999999999999999988654
No 77
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.75 E-value=3.7e-18 Score=180.57 Aligned_cols=118 Identities=28% Similarity=0.459 Sum_probs=110.6
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCCEEEE
Q 007940 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGL-EMDLPVIMM 96 (584)
Q Consensus 18 mrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~-~~~iPVIvl 96 (584)
.|||||||++..+..++.+|+..||.|..+.++.+|++.+.... ||+||+|+.||+|+|++++++++. .+.+|||++
T Consensus 1 ~~ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~~--~DlvllDi~mP~~dG~ell~~lr~~~~~~pvI~l 78 (368)
T 3dzd_A 1 KRVLVVDDEESITSSLSAILEEEGYHPDTAKTLREAEKKIKELF--FPVIVLDVWMPDGDGVNFIDFIKENSPDSVVIVI 78 (368)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHBC--CSEEEEESEETTEETTTHHHHHHHHCTTCEEEEE
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHhhCCCCeEEEE
Confidence 38999999999999999999999999999999999999998765 999999999999999999999975 468999999
Q ss_pred EcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHhc
Q 007940 97 SVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 137 (584)
Q Consensus 97 Sa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrrk 137 (584)
|++.+.+.+.+|++.||+|||.||++.++|..++++++.+.
T Consensus 79 T~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~~~ 119 (368)
T 3dzd_A 79 TGHGSVDTAVKAIKKGAYEFLEKPFSVERFLLTIKHAFEEY 119 (368)
T ss_dssp ECSSCCHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999988653
No 78
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=99.75 E-value=1.6e-17 Score=159.21 Aligned_cols=119 Identities=19% Similarity=0.364 Sum_probs=109.5
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhCC-CeE-EEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc-CCCCE
Q 007940 17 GLRVLVVDDDLAWLKILEKMLKKCS-YEV-TTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLE-MDLPV 93 (584)
Q Consensus 17 gmrVLIVDDd~~~r~~L~~lL~~~g-y~V-~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~-~~iPV 93 (584)
.++||||||++..+..++.+|+..+ |.+ ..+.++.+|++.+.... ||+||+|+.||+++|+++++.++.. +.+||
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~~~~~~--~dlvllD~~lp~~~g~~~~~~lr~~~~~~~i 82 (215)
T 1a04_A 5 PATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESLD--PDLILLDLNMPGMNGLETLDKLREKSLSGRI 82 (215)
T ss_dssp CEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHHHC--CSEEEEETTSTTSCHHHHHHHHHHSCCCSEE
T ss_pred ceEEEEECCCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHhcC--CCEEEEeCCCCCCcHHHHHHHHHHhCCCCcE
Confidence 4799999999999999999999875 877 68999999999998765 9999999999999999999999754 68899
Q ss_pred EEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHhc
Q 007940 94 IMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 137 (584)
Q Consensus 94 IvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrrk 137 (584)
|++|+..+.+...++++.||++||.||++..+|..++++++++.
T Consensus 83 i~ls~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~ 126 (215)
T 1a04_A 83 VVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQAAAGE 126 (215)
T ss_dssp EEEECCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHSC
T ss_pred EEEECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999988754
No 79
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=99.75 E-value=3.8e-18 Score=153.18 Aligned_cols=118 Identities=21% Similarity=0.322 Sum_probs=96.6
Q ss_pred CCCCCCCEEEEEeCCHHHHHHHHHHHHhC-CCeEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccC
Q 007940 12 TFNPAGLRVLVVDDDLAWLKILEKMLKKC-SYEVT-TCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEM 89 (584)
Q Consensus 12 ~f~p~gmrVLIVDDd~~~r~~L~~lL~~~-gy~V~-~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~ 89 (584)
.+.+.+.+||||||++..+..++.+|+.. ||.++ .+.++.+|++.+.... .||+||+|+.||+++|+++++.++...
T Consensus 8 ~~~~~~~~vlivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~-~~dlvilD~~l~~~~g~~~~~~lr~~~ 86 (145)
T 3kyj_B 8 HHHGSPYNVMIVDDAAMMRLYIASFIKTLPDFKVVAQAANGQEALDKLAAQP-NVDLILLDIEMPVMDGMEFLRHAKLKT 86 (145)
T ss_dssp ---CCSEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHHCT-TCCEEEECTTSCCCTTCHHHHHHHHHC
T ss_pred CCCCCCCeEEEEcCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHhcCC-CCCEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 44466789999999999999999999998 78865 8999999999998751 499999999999999999999998766
Q ss_pred CCCEEEEEc--CCChHHHHhhhhcCCceEEeCCCCHHHHHHHH
Q 007940 90 DLPVIMMSV--DGETSRVMKGVQHGACDYLLKPIRMKELRNIW 130 (584)
Q Consensus 90 ~iPVIvlSa--~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI 130 (584)
..|+|+++. ..+.+.+.++++.||++||.||++..+|...+
T Consensus 87 ~~~iiil~~~~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i 129 (145)
T 3kyj_B 87 RAKICMLSSVAVSGSPHAARARELGADGVVAKPSGTVSHDLEE 129 (145)
T ss_dssp CCEEC-CBSSCSTTSSHHHHHHHTTCSCCCBCCCSCC------
T ss_pred CCCeEEEEEeccCChHHHHHHHhCCCCEEEeCCCCHHHHHHHH
Confidence 799999987 55667788999999999999999977665543
No 80
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=99.75 E-value=1.8e-17 Score=143.36 Aligned_cols=116 Identities=16% Similarity=0.327 Sum_probs=107.2
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCC-CCCHHHHHHHHhcc---CCCC
Q 007940 17 GLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMP-DMDGFKLLEHVGLE---MDLP 92 (584)
Q Consensus 17 gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MP-dmdGlELL~~Ir~~---~~iP 92 (584)
.++||||||++..+..++.+|+..||+|..+.++.+|++.+.... ||+||+|+.|| +++|+++++.++.. +.+|
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~--~dlvi~d~~~~~~~~g~~~~~~l~~~~~~~~~~ 82 (127)
T 2gkg_A 5 SKKILIVESDTALSATLRSALEGRGFTVDETTDGKGSVEQIRRDR--PDLVVLAVDLSAGQNGYLICGKLKKDDDLKNVP 82 (127)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHHTCEEEEECCHHHHHHHHHHHC--CSEEEEESBCGGGCBHHHHHHHHHHSTTTTTSC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHHhcC--CCEEEEeCCCCCCCCHHHHHHHHhcCccccCCC
Confidence 469999999999999999999999999999999999999998765 99999999999 99999999999754 6899
Q ss_pred EEEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHH
Q 007940 93 VIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFR 135 (584)
Q Consensus 93 VIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlr 135 (584)
||++ +..+......+++.||++|+.||++..+|..+++++++
T Consensus 83 ii~~-~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~ 124 (127)
T 2gkg_A 83 IVII-GNPDGFAQHRKLKAHADEYVAKPVDADQLVERAGALIG 124 (127)
T ss_dssp EEEE-ECGGGHHHHHHSTTCCSEEEESSCCHHHHHHHHHHHHC
T ss_pred EEEE-ecCCchhHHHHHHhCcchheeCCCCHHHHHHHHHHHHc
Confidence 9999 88888888999999999999999999999999988764
No 81
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=99.74 E-value=1.8e-17 Score=160.36 Aligned_cols=120 Identities=33% Similarity=0.506 Sum_probs=111.1
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc-CCCCEE
Q 007940 16 AGLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLE-MDLPVI 94 (584)
Q Consensus 16 ~gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~-~~iPVI 94 (584)
..++||||||++..+..+..+|+..||.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++.. +.+|||
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~--~dlvllD~~l~~~~g~~~~~~l~~~~~~~~ii 83 (233)
T 1ys7_A 6 TSPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENR--PDAIVLDINMPVLDGVSVVTALRAMDNDVPVC 83 (233)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSC--CSEEEEESSCSSSCHHHHHHHHHHTTCCCCEE
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEE
Confidence 3579999999999999999999999999999999999999998754 9999999999999999999999754 689999
Q ss_pred EEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHhc
Q 007940 95 MMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 137 (584)
Q Consensus 95 vlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrrk 137 (584)
++|+..+.....++++.||++||.||++.++|..++++++++.
T Consensus 84 ~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~ 126 (233)
T 1ys7_A 84 VLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRR 126 (233)
T ss_dssp EEECCCTTTCCCTTTTTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEEcCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 9999998888899999999999999999999999999988764
No 82
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=99.74 E-value=9.1e-18 Score=150.84 Aligned_cols=118 Identities=24% Similarity=0.359 Sum_probs=100.8
Q ss_pred CEEEEEeCCHHHHHHHHHHHH--hCCCeEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCCE
Q 007940 18 LRVLVVDDDLAWLKILEKMLK--KCSYEVT-TCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGL-EMDLPV 93 (584)
Q Consensus 18 mrVLIVDDd~~~r~~L~~lL~--~~gy~V~-~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~-~~~iPV 93 (584)
++||||||++..+..+..+|+ ..||.+. .+.++.+|++.+.... ||+||+|+.||+++|+++++.++. .+.+||
T Consensus 3 ~~ILivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~al~~~~~~~--~dlvllD~~lp~~~g~~l~~~l~~~~~~~~i 80 (141)
T 3cu5_A 3 LRILIVDDEKLTRDGLIANINWKALSFDQIDQADDGINAIQIALKHP--PNVLLTDVRMPRMDGIELVDNILKLYPDCSV 80 (141)
T ss_dssp CEEEEECSCHHHHHHHHHHCCGGGSCCSEEEEESSHHHHHHHHTTSC--CSEEEEESCCSSSCHHHHHHHHHHHCTTCEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHccCCcEEeeecccHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHhhCCCCcE
Confidence 699999999999999999997 3678777 8999999999987643 999999999999999999999975 468999
Q ss_pred EEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHhc
Q 007940 94 IMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 137 (584)
Q Consensus 94 IvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrrk 137 (584)
|++|+..+.....++++.||++||.||++.++|..++++++++.
T Consensus 81 i~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 124 (141)
T 3cu5_A 81 IFMSGYSDKEYLKAAIKFRAIRYVEKPIDPSEIMDALKQSIQTV 124 (141)
T ss_dssp EEECCSTTTCCC------CCCEEECSSCCHHHHHHHHHHHHHHH
T ss_pred EEEeCCCcHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHHHH
Confidence 99999988888899999999999999999999999999887653
No 83
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=99.74 E-value=3.4e-17 Score=145.78 Aligned_cols=120 Identities=18% Similarity=0.315 Sum_probs=107.8
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHhcC----CCceEEEEecCCCCCCHHHHHHHHhcc-
Q 007940 16 AGLRVLVVDDDLAWLKILEKMLKKCSY--EVTTCGLARDALSLLRERK----DGYDIVISDVNMPDMDGFKLLEHVGLE- 88 (584)
Q Consensus 16 ~gmrVLIVDDd~~~r~~L~~lL~~~gy--~V~~a~~~~eAL~~L~~~~----~~pDLVIlDi~MPdmdGlELL~~Ir~~- 88 (584)
..++||||||++..+..++.+|+..|+ .|..+.++.+|++.+.... ..||+||+|+.||+++|+++++.++..
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~a~~~l~~~~~~~~~~~dlii~D~~l~~~~g~~~~~~l~~~~ 85 (143)
T 2qvg_A 6 DKVDILYLEDDEVDIQSVERVFHKISSLIKIEIAKSGNQALDMLYGRNKENKIHPKLILLDINIPKMNGIEFLKELRDDS 85 (143)
T ss_dssp -CCSEEEECCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHTCTTCCCCCCSEEEEETTCTTSCHHHHHHHHTTSG
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHhCCCceEEEECCHHHHHHHHHhcccccCCCCCEEEEecCCCCCCHHHHHHHHHcCc
Confidence 467999999999999999999999898 8999999999999998611 349999999999999999999999754
Q ss_pred --CCCCEEEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHH
Q 007940 89 --MDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFR 135 (584)
Q Consensus 89 --~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlr 135 (584)
+.+|||++|+..+.....++++.||++||.||++.++|..++.....
T Consensus 86 ~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~~~~~~~ 134 (143)
T 2qvg_A 86 SFTDIEVFVLTAAYTSKDKLAFESLNIRGHLIKPLDYGEAIKLFWILQS 134 (143)
T ss_dssp GGTTCEEEEEESCCCHHHHHHHTTTTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred cccCCcEEEEeCCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999998776543
No 84
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=99.74 E-value=2.8e-17 Score=149.19 Aligned_cols=121 Identities=30% Similarity=0.463 Sum_probs=110.3
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc-CCCCEE
Q 007940 16 AGLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLE-MDLPVI 94 (584)
Q Consensus 16 ~gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~-~~iPVI 94 (584)
.+++||||||++..+..++.+|+..||.|..+.++.+|+..+... .||+||+|+.||+++|+++++.++.. +.+|||
T Consensus 2 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dliild~~l~~~~g~~~~~~l~~~~~~~pii 79 (155)
T 1qkk_A 2 AAPSVFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSAD--FAGIVISDIRMPGMDGLALFRKILALDPDLPMI 79 (155)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHTCCTT--CCSEEEEESCCSSSCHHHHHHHHHHHCTTSCEE
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHcCcEEEEECCHHHHHHHHHhC--CCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEE
Confidence 357999999999999999999999999999999999999988764 39999999999999999999999654 689999
Q ss_pred EEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHhcc
Q 007940 95 MMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKI 138 (584)
Q Consensus 95 vlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrrk~ 138 (584)
++|+..+......+++.||++||.||++..+|..+++++++++.
T Consensus 80 ~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~~~ 123 (155)
T 1qkk_A 80 LVTGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAEEKRR 123 (155)
T ss_dssp EEECGGGHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEECCCChHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHHH
Confidence 99999988899999999999999999999999999999887643
No 85
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=99.74 E-value=6.7e-18 Score=178.10 Aligned_cols=119 Identities=25% Similarity=0.492 Sum_probs=106.7
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc-CCCCEE
Q 007940 16 AGLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLE-MDLPVI 94 (584)
Q Consensus 16 ~gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~-~~iPVI 94 (584)
..++||||||++..+..++.+|+..||+|.++.++.+|++.+.+.. ||+||+|+.||+|+|++++++|+.. +.+|||
T Consensus 4 ~~~~iLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~~--~dlvllD~~mp~~~G~~~~~~lr~~~~~~pii 81 (394)
T 3eq2_A 4 VSATLLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIFESEQ--PDLVICDLRMPQIDGLELIRRIRQTASETPII 81 (394)
T ss_dssp CEEEEEEECSCHHHHHHHHHHHHHTTEEEEECSSHHHHHHHHHHSC--CSEEEECCCSSSSCTHHHHHHHHHTTCCCCEE
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhhCC--CCEEEEcCCCCCCCHHHHHHHHHhhCCCCcEE
Confidence 3579999999999999999999999999999999999999998754 9999999999999999999999754 689999
Q ss_pred EEEcCCChHHHHhhhhcCCceEEeCCC-CHHHHHHHHHHHHHh
Q 007940 95 MMSVDGETSRVMKGVQHGACDYLLKPI-RMKELRNIWQHVFRK 136 (584)
Q Consensus 95 vlSa~~d~~~~~~aL~~GAdDYL~KP~-~~~eL~~aI~~vlrr 136 (584)
++|+..+.+.+.++++.||+|||.||+ ..++|..++++++++
T Consensus 82 ~lt~~~~~~~~~~a~~~ga~~yl~KP~~~~~~l~~~i~~~~~~ 124 (394)
T 3eq2_A 82 VLSGAGVMSDAVEALRLGAADYLIKPLEDLAVLEHSVRRALDR 124 (394)
T ss_dssp EC---CHHHHHHHHHHHTCSEECCSSCSCTHHHHHHHHHHHHH
T ss_pred EEEcCCCHHHHHHHHhcChhhEEECCCChHHHHHHHHHHHHhh
Confidence 999999999999999999999999999 688888888887764
No 86
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=99.73 E-value=3e-17 Score=148.64 Aligned_cols=121 Identities=21% Similarity=0.337 Sum_probs=111.3
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHHh-CCCeEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc-CCCC
Q 007940 16 AGLRVLVVDDDLAWLKILEKMLKK-CSYEVT-TCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLE-MDLP 92 (584)
Q Consensus 16 ~gmrVLIVDDd~~~r~~L~~lL~~-~gy~V~-~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~-~~iP 92 (584)
..++||||||++..+..++.+|+. .||.+. .+.++.+|++.+.... ||+||+|+.||+++|+++++.++.. +.+|
T Consensus 4 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~~a~~~l~~~~--~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ 81 (153)
T 3cz5_A 4 STARIMLVDDHPIVREGYRRLIERRPGYAVVAEAADAGEAYRLYRETT--PDIVVMDLTLPGPGGIEATRHIRQWDGAAR 81 (153)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTTSTTEEEEEEESSHHHHHHHHHTTC--CSEEEECSCCSSSCHHHHHHHHHHHCTTCC
T ss_pred cccEEEEECCcHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHhcCC--CCEEEEecCCCCCCHHHHHHHHHHhCCCCe
Confidence 467999999999999999999998 789988 8999999999998754 9999999999999999999999754 6899
Q ss_pred EEEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHhcc
Q 007940 93 VIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKI 138 (584)
Q Consensus 93 VIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrrk~ 138 (584)
||++|+..+.....++++.||++||.||++..+|..+++++++++.
T Consensus 82 ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~~ 127 (153)
T 3cz5_A 82 ILIFTMHQGSAFALKAFEAGASGYVTKSSDPAELVQAIEAILAGRR 127 (153)
T ss_dssp EEEEESCCSHHHHHHHHHTTCSEEEETTSCTTHHHHHHHHHTTTCC
T ss_pred EEEEECCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHhCCc
Confidence 9999999999999999999999999999999999999999886653
No 87
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=99.73 E-value=5.4e-17 Score=144.61 Aligned_cols=117 Identities=23% Similarity=0.337 Sum_probs=105.7
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc-CCCCEEEE
Q 007940 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLE-MDLPVIMM 96 (584)
Q Consensus 18 mrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~-~~iPVIvl 96 (584)
.+||||||++..+..++.+|+.. |.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++.. +.+|+|++
T Consensus 2 ~~Ilivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~~~--~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~~ 78 (139)
T 2jk1_A 2 PAILLVDDEPHSLAAMKLALEDD-FDVLTAQGAEAAIAILEEEW--VQVIICDQRMPGRTGVDFLTEVRERWPETVRIII 78 (139)
T ss_dssp CEEEEECSSHHHHHHHHHHHTTT-SCEEEESSHHHHHHHHHHSC--EEEEEEESCCSSSCHHHHHHHHHHHCTTSEEEEE
T ss_pred CeEEEEcCCHHHHHHHHHHhhcC-ceEEEcCCHHHHHHHHhcCC--CCEEEEeCCCCCCcHHHHHHHHHHhCCCCcEEEE
Confidence 48999999999999999999875 99999999999999998754 9999999999999999999999754 67899999
Q ss_pred EcCCChHHHHhhhhc-CCceEEeCCCCHHHHHHHHHHHHHhc
Q 007940 97 SVDGETSRVMKGVQH-GACDYLLKPIRMKELRNIWQHVFRKK 137 (584)
Q Consensus 97 Sa~~d~~~~~~aL~~-GAdDYL~KP~~~~eL~~aI~~vlrrk 137 (584)
|+..+.....+++.. ||++||.||++..+|..++++++++.
T Consensus 79 s~~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 120 (139)
T 2jk1_A 79 TGYTDSASMMAAINDAGIHQFLTKPWHPEQLLSSARNAARMF 120 (139)
T ss_dssp ESCTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred eCCCChHHHHHHHHhhchhhhccCCCCHHHHHHHHHHHHHHH
Confidence 999888888889876 59999999999999999999887653
No 88
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=99.73 E-value=3.9e-17 Score=150.86 Aligned_cols=121 Identities=25% Similarity=0.352 Sum_probs=101.0
Q ss_pred CCCCCCEEEEEeCCHHHHHHHHHHHHhCC-Ce-EEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCC
Q 007940 13 FNPAGLRVLVVDDDLAWLKILEKMLKKCS-YE-VTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMD 90 (584)
Q Consensus 13 f~p~gmrVLIVDDd~~~r~~L~~lL~~~g-y~-V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~ 90 (584)
+....++||||||++..+..++.+|+..+ +. +..+.++.+|++.+.+.. ||+||+|+.||+++|+++++.|+....
T Consensus 21 M~~~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~--~dlvilD~~l~~~~g~~l~~~lr~~~~ 98 (164)
T 3t8y_A 21 MTDRVIRVLVVDDSAFMRMVLKDIIDSQPDMKVVGFAKDGLEAVEKAIELK--PDVITMDIEMPNLNGIEALKLIMKKAP 98 (164)
T ss_dssp ---CCEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHHC--CSEEEECSSCSSSCHHHHHHHHHHHSC
T ss_pred cccCccEEEEEcCCHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHhccCC--CCEEEEeCCCCCCCHHHHHHHHHhcCC
Confidence 33455799999999999999999999875 33 447999999999998765 999999999999999999999986656
Q ss_pred CCEEEEEcCCChH--HHHhhhhcCCceEEeCCCC---------HHHHHHHHHHHHH
Q 007940 91 LPVIMMSVDGETS--RVMKGVQHGACDYLLKPIR---------MKELRNIWQHVFR 135 (584)
Q Consensus 91 iPVIvlSa~~d~~--~~~~aL~~GAdDYL~KP~~---------~~eL~~aI~~vlr 135 (584)
+|||++++..+.. .+.++++.||++||.||++ ..+|..++++++.
T Consensus 99 ~~ii~~s~~~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~r~~~~~l~~~i~~~~~ 154 (164)
T 3t8y_A 99 TRVIMVSSLTEEGAAITIEALRNGAVDFITKPHGSISLTFRQVAPELLEKIRQAMN 154 (164)
T ss_dssp CEEEEEESSCCTTCHHHHHHHHTTCCEEEECSSSSSCGGGGGGHHHHHHHHHHHTT
T ss_pred ceEEEEecCCccchHHHHHHHHcCcCEEEeCCCCHHHHHHHhhhHHHHHHHHHHhC
Confidence 9999999876643 6779999999999999999 5666666666554
No 89
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=99.73 E-value=5.9e-17 Score=155.86 Aligned_cols=115 Identities=26% Similarity=0.416 Sum_probs=106.8
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc-CCCCEEEE
Q 007940 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLE-MDLPVIMM 96 (584)
Q Consensus 18 mrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~-~~iPVIvl 96 (584)
++||||||++..+..++.+|+..| .|..+.++.+|++.+ ..||+||+|+.||+++|+++++.++.. +.+|||++
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~-~v~~~~~~~~al~~~----~~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~l 77 (220)
T 1p2f_A 3 WKIAVVDDDKNILKKVSEKLQQLG-RVKTFLTGEDFLNDE----EAFHVVVLDVMLPDYSGYEICRMIKETRPETWVILL 77 (220)
T ss_dssp EEEEEECSCHHHHHHHHHHHTTTE-EEEEESSHHHHHHCC----SCCSEEEEESBCSSSBHHHHHHHHHHHCTTSEEEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHhCC-CEEEECCHHHHHHhc----CCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEEE
Confidence 599999999999999999999988 888999999999876 239999999999999999999999755 78999999
Q ss_pred EcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHhc
Q 007940 97 SVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 137 (584)
Q Consensus 97 Sa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrrk 137 (584)
|+..+.....++++.||++||.||++.++|..++++++++.
T Consensus 78 t~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~ 118 (220)
T 1p2f_A 78 TLLSDDESVLKGFEAGADDYVTKPFNPEILLARVKRFLERE 118 (220)
T ss_dssp ESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHC
T ss_pred EcCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHccc
Confidence 99999999999999999999999999999999999988764
No 90
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.72 E-value=3.5e-17 Score=174.00 Aligned_cols=118 Identities=25% Similarity=0.505 Sum_probs=110.5
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCCEEEE
Q 007940 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGL-EMDLPVIMM 96 (584)
Q Consensus 18 mrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~-~~~iPVIvl 96 (584)
|+||||||++..+..++.+|+..||.|..+.++.+|++.+.... ||+||+|+.||+|+|++++++++. .+.+|||++
T Consensus 1 m~ILIVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~~--~DlvllD~~mp~~dG~ell~~lr~~~~~~pvIvl 78 (387)
T 1ny5_A 1 MNVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSEKH--FNVVLLDLLLPDVNGLEILKWIKERSPETEVIVI 78 (387)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHHTCEEEEESSHHHHHHHHHHSC--CSEEEEESBCSSSBHHHHHHHHHHHCTTSEEEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEE
Confidence 58999999999999999999999999999999999999998754 999999999999999999999975 468999999
Q ss_pred EcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHhc
Q 007940 97 SVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 137 (584)
Q Consensus 97 Sa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrrk 137 (584)
|+..+.+.+.++++.||+|||.||++.++|..+++++++.+
T Consensus 79 T~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~~~ 119 (387)
T 1ny5_A 79 TGHGTIKTAVEAMKMGAYDFLTKPCMLEEIELTINKAIEHR 119 (387)
T ss_dssp EETTCHHHHHHHHTTTCCEEEEESCCHHHHHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHhcCceEEecCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988653
No 91
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=99.72 E-value=4.3e-17 Score=145.47 Aligned_cols=116 Identities=23% Similarity=0.406 Sum_probs=101.3
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc------cCC
Q 007940 17 GLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGL------EMD 90 (584)
Q Consensus 17 gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~------~~~ 90 (584)
.++||||||++..+..++.+|+..|+.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++. .+.
T Consensus 10 ~~~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~l~~~~--~dlvllD~~lp~~~g~~~~~~l~~~~~~~~~~~ 87 (140)
T 3c97_A 10 PLSVLIAEDNDICRLVAAKALEKCTNDITVVTNGLQALQAYQNRQ--FDVIIMDIQMPVMDGLEAVSEIRNYERTHNTKR 87 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHTTTCSEEEEESSHHHHHHHHHHSC--CSEEEECTTCCSSCHHHHHHHHHHHHHHHTCCC
T ss_pred CceEEEEcCCHHHHHHHHHHHHHcCCceEEECCHHHHHHHHhcCC--CCEEEEeCCCCCCcHHHHHHHHHhhhhhcCCCc
Confidence 469999999999999999999999999999999999999998754 999999999999999999999974 257
Q ss_pred CCEEEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHhc
Q 007940 91 LPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 137 (584)
Q Consensus 91 iPVIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrrk 137 (584)
+|||++|+....... .++||++||.||++.++|..++++++.+.
T Consensus 88 ~~ii~~s~~~~~~~~---~~~g~~~~l~KP~~~~~L~~~i~~~~~~~ 131 (140)
T 3c97_A 88 ASIIAITADTIDDDR---PGAELDEYVSKPLNPNQLRDVVLTCHSEG 131 (140)
T ss_dssp CCCEEEESSCCSCCC---CCSSCSEEEESSCCHHHHHHHHHHHHC--
T ss_pred eEEEEEeCccchhHH---HhCChhheEeCCCCHHHHHHHHHHHhCCC
Confidence 899999986554432 37899999999999999999999887554
No 92
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=99.72 E-value=9.3e-17 Score=142.47 Aligned_cols=116 Identities=21% Similarity=0.328 Sum_probs=107.1
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccC-CCCE
Q 007940 15 PAGLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEM-DLPV 93 (584)
Q Consensus 15 p~gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~-~iPV 93 (584)
..+++||||||++..+..++.+|+..||.|..+.++.+|++.+.... ||+|| ||+++|+++++.++..+ .+||
T Consensus 16 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~--~dlvi----~~~~~g~~~~~~l~~~~~~~~i 89 (137)
T 2pln_A 16 RGSMRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIRN--YDLVM----VSDKNALSFVSRIKEKHSSIVV 89 (137)
T ss_dssp TTCSEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHSC--CSEEE----ECSTTHHHHHHHHHHHSTTSEE
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHHcCC--CCEEE----EcCccHHHHHHHHHhcCCCccE
Confidence 56789999999999999999999999999999999999999998754 99999 99999999999997556 8999
Q ss_pred EEEEcCCChHHHHhhhhcCCceEEeCCC-CHHHHHHHHHHHHHh
Q 007940 94 IMMSVDGETSRVMKGVQHGACDYLLKPI-RMKELRNIWQHVFRK 136 (584)
Q Consensus 94 IvlSa~~d~~~~~~aL~~GAdDYL~KP~-~~~eL~~aI~~vlrr 136 (584)
|++|+..+.....++++.||++||.||+ +..+|..++++++++
T Consensus 90 i~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~~ 133 (137)
T 2pln_A 90 LVSSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRF 133 (137)
T ss_dssp EEEESSCCHHHHHHHHHTTCSEEEESSCSCHHHHHHHHHHHTC-
T ss_pred EEEeCCCCHHHHHHHHHcCCceeeeCCCCCHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999 999999999888754
No 93
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=99.72 E-value=4.5e-17 Score=174.46 Aligned_cols=118 Identities=33% Similarity=0.452 Sum_probs=110.0
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc---CCCCEE
Q 007940 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLE---MDLPVI 94 (584)
Q Consensus 18 mrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~---~~iPVI 94 (584)
.+||||||++..+..++.+|+..||.|..+.++.+|++.+.... ||+||+|+.||+|+|+++++.|+.. +.+|||
T Consensus 2 ~~iLivdD~~~~~~~l~~~L~~~~~~v~~a~~~~~al~~~~~~~--~dlvllD~~mp~~~G~~~~~~l~~~~~~~~~pii 79 (459)
T 1w25_A 2 ARILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAARDL--PDIILLDVMMPGMDGFTVCRKLKDDPTTRHIPVV 79 (459)
T ss_dssp CEEEEECSSTTHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHC--CSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEE
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcCC--CCEEEEcCCCCCCCHHHHHHHHhcCcccCCCCEE
Confidence 48999999999999999999999999999999999999998755 9999999999999999999999753 478999
Q ss_pred EEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHhc
Q 007940 95 MMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 137 (584)
Q Consensus 95 vlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrrk 137 (584)
++|+..+.....+++++||++||.||++..+|..+++++++..
T Consensus 80 ~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~l~~~i~~~~~~~ 122 (459)
T 1w25_A 80 LITALDGRGDRIQGLESGASDFLTKPIDDVMLFARVRSLTRFK 122 (459)
T ss_dssp EEECSSCHHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999887654
No 94
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=99.72 E-value=2.1e-16 Score=138.44 Aligned_cols=120 Identities=19% Similarity=0.310 Sum_probs=107.9
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCC-CCHHHHHHHHhcc-CCCC
Q 007940 15 PAGLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPD-MDGFKLLEHVGLE-MDLP 92 (584)
Q Consensus 15 p~gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPd-mdGlELL~~Ir~~-~~iP 92 (584)
..+++||||||++..+..++..|+..||.|..+.++.+|++.+... ..||+||+|+.||+ ++|+++++.++.. +.+|
T Consensus 3 m~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~-~~~dlvi~d~~l~~~~~g~~~~~~l~~~~~~~~ 81 (132)
T 2rdm_A 3 LEAVTILLADDEAILLLDFESTLTDAGFLVTAVSSGAKAIEMLKSG-AAIDGVVTDIRFCQPPDGWQVARVAREIDPNMP 81 (132)
T ss_dssp CSSCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTT-CCCCEEEEESCCSSSSCHHHHHHHHHHHCTTCC
T ss_pred CCCceEEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHcC-CCCCEEEEeeeCCCCCCHHHHHHHHHhcCCCCC
Confidence 3468999999999999999999999999999999999999999874 14999999999998 9999999999754 6899
Q ss_pred EEEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHhc
Q 007940 93 VIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 137 (584)
Q Consensus 93 VIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrrk 137 (584)
||++|+..+......+++.| +||.||++..+|..+++++++..
T Consensus 82 ii~~s~~~~~~~~~~~~~~~--~~l~kP~~~~~l~~~i~~~~~~~ 124 (132)
T 2rdm_A 82 IVYISGHAALEWASNGVPDS--IILEKPFTSAQLITAVSQLLNAR 124 (132)
T ss_dssp EEEEESSCCTTHHHHSCTTC--EEEESSCCHHHHHHHHHHHHHTT
T ss_pred EEEEeCCccHHHHHhhcCCc--ceEeCCCCHHHHHHHHHHHHhcC
Confidence 99999998888888888876 79999999999999999988654
No 95
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=99.72 E-value=3e-17 Score=148.50 Aligned_cols=120 Identities=22% Similarity=0.255 Sum_probs=99.5
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhC-CC-eEEEECCHHHHHHHHHh-cCCCceEEEEecCCCCCCHHHHHHHHhcc-CCCC
Q 007940 17 GLRVLVVDDDLAWLKILEKMLKKC-SY-EVTTCGLARDALSLLRE-RKDGYDIVISDVNMPDMDGFKLLEHVGLE-MDLP 92 (584)
Q Consensus 17 gmrVLIVDDd~~~r~~L~~lL~~~-gy-~V~~a~~~~eAL~~L~~-~~~~pDLVIlDi~MPdmdGlELL~~Ir~~-~~iP 92 (584)
.++||||||++..+..++.+|+.. |+ .|..+.++.+|++.+.. .. ||+||+|+.||+++|+++++.++.. +.+|
T Consensus 3 ~~~iLivdd~~~~~~~l~~~L~~~~g~~~v~~~~~~~~a~~~l~~~~~--~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ 80 (154)
T 2qsj_A 3 LTVVLIVDDHHLIRAGAKNLLEGAFSGMRVEGAETVSDALAFLEADNT--VDLILLDVNLPDAEAIDGLVRLKRFDPSNA 80 (154)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHTTCC--CSEEEECC------CHHHHHHHHHHCTTSE
T ss_pred ccEEEEEcCCHHHHHHHHHHHHhCCCceEEEEecCHHHHHHHHhccCC--CCEEEEeCCCCCCchHHHHHHHHHhCCCCe
Confidence 579999999999999999999987 87 67899999999999987 44 9999999999999999999999754 6899
Q ss_pred EEEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHhcc
Q 007940 93 VIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKI 138 (584)
Q Consensus 93 VIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrrk~ 138 (584)
||++|+..+......+++.||++||.||++..+|..+++++++++.
T Consensus 81 ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~l~~~~~~~~ 126 (154)
T 2qsj_A 81 VALISGETDHELIRAALEAGADGFIPKSADPQVLIHAVSLILEGEI 126 (154)
T ss_dssp EEEC-----CHHHHHHHHTTCCBBCCTTSCHHHHHHHHHHHHTTCC
T ss_pred EEEEeCCCCHHHHHHHHHccCCEEEeCCCCHHHHHHHHHHHHcCCE
Confidence 9999999888999999999999999999999999999999987654
No 96
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=99.71 E-value=4.6e-17 Score=138.29 Aligned_cols=113 Identities=17% Similarity=0.177 Sum_probs=103.1
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc---CCCCE
Q 007940 17 GLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLE---MDLPV 93 (584)
Q Consensus 17 gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~---~~iPV 93 (584)
+++||||||++..+..+..+|+..||.|..+.++.+|+..+.... ||+||+|+.||+++|+++++.++.. +.+||
T Consensus 1 ~~~iliv~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~l~~~~--~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~i 78 (119)
T 2j48_A 1 AGHILLLEEEDEAATVVCEMLTAAGFKVIWLVDGSTALDQLDLLQ--PIVILMAWPPPDQSCLLLLQHLREHQADPHPPL 78 (119)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHHC--CSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCcEEEEecCHHHHHHHHHhcC--CCEEEEecCCCCCCHHHHHHHHHhccccCCCCE
Confidence 468999999999999999999999999999999999999998764 9999999999999999999999754 68999
Q ss_pred EEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHH
Q 007940 94 IMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVF 134 (584)
Q Consensus 94 IvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vl 134 (584)
|+++...+.. .+++.|+++|+.||++..+|..++++++
T Consensus 79 i~~~~~~~~~---~~~~~g~~~~l~kp~~~~~l~~~l~~~~ 116 (119)
T 2j48_A 79 VLFLGEPPVD---PLLTAQASAILSKPLDPQLLLTTLQGLC 116 (119)
T ss_dssp EEEESSCCSS---HHHHHHCSEECSSCSTTHHHHHHHHTTC
T ss_pred EEEeCCCCch---hhhhcCHHHhccCCCCHHHHHHHHHHHh
Confidence 9999887665 8899999999999999999999887654
No 97
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=99.71 E-value=2.8e-17 Score=144.27 Aligned_cols=118 Identities=24% Similarity=0.321 Sum_probs=105.8
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc-CCCCEEE
Q 007940 17 GLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLE-MDLPVIM 95 (584)
Q Consensus 17 gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~-~~iPVIv 95 (584)
.++||||||++..+..++.+|+..++.|..+.++.+|+..+.. . ||+||+|+.||+++|+++++.++.. +.+|||+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~-~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~ 79 (135)
T 3eqz_A 3 LNRVFIVDDDTLTCNLLKTIVEPIFGNVEAFQHPRAFLTLSLN--K-QDIIILDLMMPDMDGIEVIRHLAEHKSPASLIL 79 (135)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTCSCEEEESCHHHHTTSCCC--T-TEEEEEECCTTTTHHHHHHHHHHHTTCCCEEEE
T ss_pred cceEEEEeCCHHHHHHHHHHHHhhcceeeeecCHHHHHHhhcc--C-CCEEEEeCCCCCCCHHHHHHHHHhCCCCCCEEE
Confidence 5799999999999999999999988899999999999887754 3 9999999999999999999999754 6889999
Q ss_pred EEcCCCh-----HHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHhc
Q 007940 96 MSVDGET-----SRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 137 (584)
Q Consensus 96 lSa~~d~-----~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrrk 137 (584)
+|+..+. +...++++.||++||.||++.++|..+++++..+.
T Consensus 80 ~s~~~~~~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~l~~~~~~~ 126 (135)
T 3eqz_A 80 ISGYDSGVLHSAETLALSCGLNVINTFTKPINTEVLTCFLTSLSNRQ 126 (135)
T ss_dssp EESSCHHHHHHHHHHHHHTTCEEEEEEESSCCHHHHHHHHHHHSCCC
T ss_pred EEeccchhHHHHHHHHHHcCCCcceeeCCCCCHHHHHHHHHHHHhhc
Confidence 9998774 67778999999999999999999999999886543
No 98
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=99.71 E-value=1.8e-16 Score=141.28 Aligned_cols=119 Identities=20% Similarity=0.360 Sum_probs=102.6
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHHhC-CCeE-EEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccC-CC
Q 007940 15 PAGLRVLVVDDDLAWLKILEKMLKKC-SYEV-TTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEM-DL 91 (584)
Q Consensus 15 p~gmrVLIVDDd~~~r~~L~~lL~~~-gy~V-~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~-~i 91 (584)
...++||||||++..+..++.+|+.. ++.+ ..+.++.+|++.+.... ||+||+|+.||+++|+++++.++... ..
T Consensus 7 ~~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~--~dlvi~d~~l~~~~g~~~~~~l~~~~~~~ 84 (143)
T 2qv0_A 7 GEKMKVIIVEDEFLAQQELSWLINTHSQMEIVGSFDDGLDVLKFLQHNK--VDAIFLDINIPSLDGVLLAQNISQFAHKP 84 (143)
T ss_dssp ---CEEEEECSCHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHHHHCC--CSEEEECSSCSSSCHHHHHHHHTTSTTCC
T ss_pred CCceEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC--CCEEEEecCCCCCCHHHHHHHHHccCCCc
Confidence 34689999999999999999999986 7885 48999999999998754 99999999999999999999997654 55
Q ss_pred CEEEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHhc
Q 007940 92 PVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 137 (584)
Q Consensus 92 PVIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrrk 137 (584)
|||++|+.. +...++++.||++||.||++..+|..++++++++.
T Consensus 85 ~ii~~s~~~--~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 128 (143)
T 2qv0_A 85 FIVFITAWK--EHAVEAFELEAFDYILKPYQESRIINMLQKLTTAW 128 (143)
T ss_dssp EEEEEESCC--TTHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred eEEEEeCCH--HHHHHHHhCCcceEEeCCCCHHHHHHHHHHHHHHH
Confidence 688888764 35678999999999999999999999999988654
No 99
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=99.70 E-value=7.6e-17 Score=155.43 Aligned_cols=114 Identities=21% Similarity=0.324 Sum_probs=105.8
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccC-CCCEEEE
Q 007940 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEM-DLPVIMM 96 (584)
Q Consensus 18 mrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~-~iPVIvl 96 (584)
|+||||||++..+..++.+|+..||.|..+.++.+|++.+.... ||+|| ||+++|+++++.++..+ .+|||++
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~--~dlvi----lp~~~g~~~~~~lr~~~~~~~ii~l 74 (223)
T 2hqr_A 1 MRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIRN--YDLVM----VSDKNALSFVSRIKEKHSSIVVLVS 74 (223)
T ss_dssp CCEEEECSCHHHHHHHHHHHGGGTCCEEEESSHHHHHHHHTTSC--CSEEE----ECCTTHHHHHHHHHHHCTTSEEEEE
T ss_pred CEEEEEcCCHHHHHHHHHHHHHCCcEEEEECCHHHHHHHHhcCC--CCEEE----eCCCCHHHHHHHHHhCCCCCcEEEE
Confidence 58999999999999999999999999999999999999998644 99999 99999999999997556 8999999
Q ss_pred EcCCChHHHHhhhhcCCceEEeCCC-CHHHHHHHHHHHHHhc
Q 007940 97 SVDGETSRVMKGVQHGACDYLLKPI-RMKELRNIWQHVFRKK 137 (584)
Q Consensus 97 Sa~~d~~~~~~aL~~GAdDYL~KP~-~~~eL~~aI~~vlrrk 137 (584)
|+..+......++++||++||.||+ +.++|..++++++++.
T Consensus 75 t~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~~L~~~i~~~~~~~ 116 (223)
T 2hqr_A 75 SDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRFW 116 (223)
T ss_dssp ESSCCHHHHHHHHHHTCSEEEETTCSCTHHHHHHHHHHTSSC
T ss_pred ECCCCHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHhccc
Confidence 9999999999999999999999999 9999999999887653
No 100
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=99.70 E-value=1.9e-17 Score=160.61 Aligned_cols=121 Identities=9% Similarity=0.009 Sum_probs=104.4
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHHh-CCCeEEE-ECCHHHHHH-HHHhcCCCceEEEEecCCCCCCHHHHHHHHhc--cCC
Q 007940 16 AGLRVLVVDDDLAWLKILEKMLKK-CSYEVTT-CGLARDALS-LLRERKDGYDIVISDVNMPDMDGFKLLEHVGL--EMD 90 (584)
Q Consensus 16 ~gmrVLIVDDd~~~r~~L~~lL~~-~gy~V~~-a~~~~eAL~-~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~--~~~ 90 (584)
..++||||||++..+..++.+|+. .||.|.. +.++.+++. .+... .||+||+|+.||+++|+++++.++. .+.
T Consensus 6 ~~~~IlivdD~~~~~~~l~~~L~~~~~~~v~~~~~~~~~~~~~~~~~~--~~dlvllD~~mp~~~G~~~~~~lr~~~~~~ 83 (225)
T 3klo_A 6 NKLNVRMLSDVCMQSRLLKEALESKLPLALEITPFSELWLEENKPESR--SIQMLVIDYSRISDDVLTDYSSFKHISCPD 83 (225)
T ss_dssp SSEEEEEESCCSHHHHHHHHHHHHHSSEEEEEECGGGHHHHTTCSGGG--GCCEEEEEGGGCCHHHHHHHHHHHHHHCTT
T ss_pred CceEEEEEcCcHHHHHHHHHHHhhCCCceEEEEeCCcHHHHHHHhhcc--CCCEEEEeCCCCCCCHHHHHHHHHHhhCCC
Confidence 357999999999999999999994 6788754 445555555 34443 4999999999999999999999976 578
Q ss_pred CCEEEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHhcc
Q 007940 91 LPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKI 138 (584)
Q Consensus 91 iPVIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrrk~ 138 (584)
+|||++|+..+......+++.||++||.||++.++|..++++++++..
T Consensus 84 ~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~ 131 (225)
T 3klo_A 84 AKEVIINCPQDIEHKLLFKWNNLAGVFYIDDDMDTLIKGMSKILQDEM 131 (225)
T ss_dssp CEEEEEEECTTCCHHHHTTSTTEEEEEETTCCHHHHHHHHHHHHTTCC
T ss_pred CcEEEEECCcchhHHHHHHHhCCCEEEecCCCHHHHHHHHHHHHCCCE
Confidence 999999999998899999999999999999999999999999987653
No 101
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=99.70 E-value=7.8e-17 Score=143.13 Aligned_cols=119 Identities=20% Similarity=0.239 Sum_probs=102.3
Q ss_pred CCCCCCCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHh-cCCCceEEEEecCCCCCCHHHHHHHHhcc-C
Q 007940 12 TFNPAGLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRE-RKDGYDIVISDVNMPDMDGFKLLEHVGLE-M 89 (584)
Q Consensus 12 ~f~p~gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~-~~~~pDLVIlDi~MPdmdGlELL~~Ir~~-~ 89 (584)
.+.+.+++||||||++..+..++.+|+..||.|..+.++.+|++.+.. .. ||+||+|+.||+++|+++++.++.. +
T Consensus 10 ~~~~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~--~dlvilD~~l~~~~g~~~~~~l~~~~~ 87 (138)
T 2b4a_A 10 HHHMQPFRVTLVEDEPSHATLIQYHLNQLGAEVTVHPSGSAFFQHRSQLST--CDLLIVSDQLVDLSIFSLLDIVKEQTK 87 (138)
T ss_dssp ----CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHTGGGGGS--CSEEEEETTCTTSCHHHHHHHHTTSSS
T ss_pred cCCCCCCeEEEECCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHHhCCC--CCEEEEeCCCCCCCHHHHHHHHHhhCC
Confidence 444678999999999999999999999999999999999999999876 54 9999999999999999999999754 5
Q ss_pred CCCEEEEE-cCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 007940 90 DLPVIMMS-VDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 136 (584)
Q Consensus 90 ~iPVIvlS-a~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrr 136 (584)
.+|||++| +..+... .+++ |++||.||++.++|..++++++++
T Consensus 88 ~~~ii~ls~~~~~~~~-~~~~---~~~~l~KP~~~~~L~~~i~~~~~~ 131 (138)
T 2b4a_A 88 QPSVLILTTGRHELIE-SSEH---NLSYLQKPFAISELRAAIDYHKPS 131 (138)
T ss_dssp CCEEEEEESCC--CCC-CSSS---CEEEEESSCCHHHHHHHHHHTCCC
T ss_pred CCCEEEEECCCCCHHH-HHHH---HHheeeCCCCHHHHHHHHHHHHHh
Confidence 89999999 8877666 6776 999999999999999999877543
No 102
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A*
Probab=99.68 E-value=1.3e-16 Score=164.77 Aligned_cols=117 Identities=26% Similarity=0.372 Sum_probs=106.9
Q ss_pred CCEEEEEeCCHHHHHHHHHHHH-hCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc---CCCC
Q 007940 17 GLRVLVVDDDLAWLKILEKMLK-KCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLE---MDLP 92 (584)
Q Consensus 17 gmrVLIVDDd~~~r~~L~~lL~-~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~---~~iP 92 (584)
..+||||||++..+..++.+|. ..||.|..+.++.+|++.+.... ||+||+|+.||+|+|+++++.|+.. +.+|
T Consensus 18 ~~~ilivdD~~~~~~~l~~~l~~~~~~~v~~~~~~~~al~~~~~~~--~dlvl~D~~mp~~~G~~~~~~l~~~~~~~~~~ 95 (358)
T 3bre_A 18 AVMVLLVDDQAMIGEAVRRSLASEAGIDFHFCSDPQQAVAVANQIK--PTVILQDLVMPGVDGLTLLAAYRGNPATRDIP 95 (358)
T ss_dssp CEEEEEECSCTTHHHHHHTTSSSCTTEEEEEECCHHHHHHHHHHHC--CSEEEEESBCSSSBHHHHHHHHTTSTTTTTSC
T ss_pred CceEEEEECCHHHHHHHHHHHHhccCcEEEEeCCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHhcCcccCCCc
Confidence 4689999999999999999996 45899999999999999998755 9999999999999999999999753 4789
Q ss_pred EEEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHH
Q 007940 93 VIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFR 135 (584)
Q Consensus 93 VIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlr 135 (584)
||++|+..+.....++++.||+|||.||++..+|..+++.+++
T Consensus 96 ii~~s~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~l~~~v~~~~~ 138 (358)
T 3bre_A 96 IIVLSTKEEPTVKSAAFAAGANDYLVKLPDAIELVARIRYHSR 138 (358)
T ss_dssp EEEEESSCCHHHHHHHHHTTCSEEEESCCCHHHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHhcChheEeeccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998887654
No 103
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=99.68 E-value=4.3e-17 Score=130.79 Aligned_cols=62 Identities=58% Similarity=0.943 Sum_probs=59.6
Q ss_pred cccccccccchhHHHHHHHHHHHhcccccCHHHHHhhhCCCCCchHHHHhhhHHHHHHHHhh
Q 007940 197 STKKARVVWSIDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLTRL 258 (584)
Q Consensus 197 s~KK~rvvws~eLhqkFv~av~~iG~s~~~Pk~Il~~m~v~~Lt~~~V~sHlqkyr~~~~RL 258 (584)
+.++++++|++++|++|++|+++||.++++||.|+++|+|++||.++|+||+||||.+++|+
T Consensus 2 ~~~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~r~ 63 (64)
T 1irz_A 2 AQKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVALKKV 63 (64)
T ss_dssp CCCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHHcc
Confidence 45789999999999999999999999999999999999999999999999999999999986
No 104
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=99.68 E-value=3.9e-17 Score=158.93 Aligned_cols=118 Identities=22% Similarity=0.341 Sum_probs=109.1
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhCC-CeEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCCEE
Q 007940 18 LRVLVVDDDLAWLKILEKMLKKCS-YEVT-TCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGL-EMDLPVI 94 (584)
Q Consensus 18 mrVLIVDDd~~~r~~L~~lL~~~g-y~V~-~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~-~~~iPVI 94 (584)
++||||||++..+..++.+|+..| |.++ .+.++.+|++.+.... ||+||+|+.||+++|+++++.++. .+.+|||
T Consensus 2 ~~ILivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~l~~~~--~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii 79 (225)
T 3c3w_A 2 VKVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPAAR--PDVAVLDVRLPDGNGIELCRDLLSRMPDLRCL 79 (225)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTCTTEEEEEEESSHHHHHHHHHHHC--CSEEEECSEETTEEHHHHHHHHHHHCTTCEEE
T ss_pred cEEEEEcCCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhcC--CCEEEEeCCCCCCCHHHHHHHHHHhCCCCcEE
Confidence 589999999999999999999887 8854 7999999999998755 999999999999999999999975 4689999
Q ss_pred EEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHhc
Q 007940 95 MMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 137 (584)
Q Consensus 95 vlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrrk 137 (584)
++|+..+.....++++.||++||.||++..+|..++++++++.
T Consensus 80 ~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~ 122 (225)
T 3c3w_A 80 ILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGAGR 122 (225)
T ss_dssp EGGGSSSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999998765
No 105
>3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET: EPE; 2.50A {Pseudomonas aeruginosa}
Probab=99.67 E-value=1.6e-16 Score=168.67 Aligned_cols=120 Identities=23% Similarity=0.297 Sum_probs=104.4
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHh-CCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccC-CCCEE
Q 007940 17 GLRVLVVDDDLAWLKILEKMLKK-CSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEM-DLPVI 94 (584)
Q Consensus 17 gmrVLIVDDd~~~r~~L~~lL~~-~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~-~iPVI 94 (584)
.+|||||||++..+..++.+|+. .++.|.++.++.+|++.+... ..||+||+|+.||+|||++++++++... ..|||
T Consensus 3 ~~~ILivDD~~~~~~~l~~~L~~~~~~~v~~a~~g~eal~~l~~~-~~~DlvllDi~mP~~dG~ell~~l~~~~~~~~ii 81 (400)
T 3sy8_A 3 DLNVLVLEDEPFQRLVAVTALKKVVPGSILEAADGKEAVAILESC-GHVDIAICDLQMSGMDGLAFLRHASLSGKVHSVI 81 (400)
T ss_dssp CEEEEEECSSHHHHHHHHHHHHHHCSEEEEEESSHHHHHHHHHHH-SCEEEEEECSSCSSSCHHHHHHHHHHHTCEEEEE
T ss_pred CceEEEEcCCHHHHHHHHHHHHhcCCcEEEEecCHHHHHHHHhhC-CCCCEEEEeCCCCCCCHHHHHHHHHhcCCCceEE
Confidence 47999999999999999999998 578999999999999999873 1399999999999999999999997654 45566
Q ss_pred EEEcCCCh-----HHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHhc
Q 007940 95 MMSVDGET-----SRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 137 (584)
Q Consensus 95 vlSa~~d~-----~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrrk 137 (584)
++|+..+. ..+.+++++||++||.||++.++|..++++++++.
T Consensus 82 ~~s~~~~~~~~~~~~~~~a~~~ga~~yl~KP~~~~~L~~~i~~~~~~~ 129 (400)
T 3sy8_A 82 LSSEVDPILRQATISMIECLGLNFLGDLGKPFSLERITALLTRYNARR 129 (400)
T ss_dssp ESCCCCGGGHHHHHHHHHTTTCEEEEECCSSCCHHHHHHHHHHHHHHT
T ss_pred EEcCchHHHHHHHHHHHHHcCCeeccCcCCCcCHHHHHHHHHHHHHhh
Confidence 66666655 56789999999999999999999999999987654
No 106
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=99.67 E-value=7.8e-17 Score=152.56 Aligned_cols=115 Identities=11% Similarity=0.107 Sum_probs=103.5
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc-CCCCEE
Q 007940 16 AGLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLE-MDLPVI 94 (584)
Q Consensus 16 ~gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~-~~iPVI 94 (584)
.+++||||||++..+..+..+|+..||.|..+.++.+|+ . ..||+||+|+.||+++|+ +++.++.. +.+|||
T Consensus 11 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al----~--~~~dlvl~D~~mp~~~g~-l~~~~~~~~~~~~ii 83 (196)
T 1qo0_D 11 RELQVLVLNPPGEVSDALVLQLIRIGCSVRQCWPPPEAF----D--VPVDVVFTSIFQNRHHDE-IAALLAAGTPRTTLV 83 (196)
T ss_dssp GGCEEEEESCTTHHHHHHHHHHHHHTCEEEEECSCCSSC----S--SCCSEEEEECCSSTHHHH-HHHHHHHSCTTCEEE
T ss_pred cCCeEEEEcCChhHHHHHHHHHHHcCCeEEEecCchhhC----C--CCCCEEEEeCCCCccchH-HHHHHhccCCCCCEE
Confidence 467999999999999999999999999999888777765 2 349999999999999999 88888766 789999
Q ss_pred EEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHhc
Q 007940 95 MMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 137 (584)
Q Consensus 95 vlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrrk 137 (584)
++|+..+.+...++++.||++||.||++..+|..+++.++++.
T Consensus 84 ~lt~~~~~~~~~~a~~~ga~~~l~KP~~~~~L~~~l~~~~~~~ 126 (196)
T 1qo0_D 84 ALVEYESPAVLSQIIELECHGVITQPLDAHRVLPVLVSARRIS 126 (196)
T ss_dssp EEECCCSHHHHHHHHHHTCSEEEESSCCGGGHHHHHHHHHHHH
T ss_pred EEEcCCChHHHHHHHHcCCCeeEecCcCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999887653
No 107
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=99.67 E-value=6.6e-18 Score=145.88 Aligned_cols=118 Identities=31% Similarity=0.472 Sum_probs=107.9
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCCEEE
Q 007940 17 GLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGL-EMDLPVIM 95 (584)
Q Consensus 17 gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~-~~~iPVIv 95 (584)
..+||||||++..+..++.+|+..||.|..+.++.+|++.+... .||+||+|+.||+++|+++++.++. .+.+|||+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~--~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~ii~ 80 (124)
T 1dc7_A 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASK--TPDVLLSDIRMPGMDGLALLKQIKQRHPMLPVII 80 (124)
T ss_dssp CCCCEEECSSSSHHHHHHHHHTTTTCCCEECCCTTHHHHHSSSC--CCSCEEECSCSSHHHHCSTHHHHHHHCTTSCCCC
T ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcC--CCCEEEEeeecCCCCHHHHHHHHHhhCCCCCEEE
Confidence 45899999999999999999999999999999999999988764 4999999999999999999999965 46799999
Q ss_pred EEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 007940 96 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 136 (584)
Q Consensus 96 lSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrr 136 (584)
+|+..+.....++++.||++|+.||++.++|..++++++++
T Consensus 81 ~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 121 (124)
T 1dc7_A 81 MTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 (124)
T ss_dssp BCCSTTSTTTTSSCTTCCCCCBCSSCCHHHHHHHHHHHHHH
T ss_pred EecCCCHHHHHHHHhcCcceEeeCCCCHHHHHHHHHHHHHh
Confidence 99998888889999999999999999999999999988764
No 108
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=99.59 E-value=1.4e-15 Score=152.29 Aligned_cols=103 Identities=18% Similarity=0.335 Sum_probs=86.7
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhC-CCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCCEEE
Q 007940 17 GLRVLVVDDDLAWLKILEKMLKKC-SYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIM 95 (584)
Q Consensus 17 gmrVLIVDDd~~~r~~L~~lL~~~-gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVIv 95 (584)
..|||||||++..++.+...|+.. |+.|..+ ++.+++..+.. ..||+||+|+.||+|+|++++++++. ..+|||+
T Consensus 4 ~~~ILiVdD~~~~~~~l~~~L~~~~~~~v~~~-~~~~~~~~~~~--~~~dlvllD~~mP~~~G~~~~~~lr~-~~~pvi~ 79 (259)
T 3luf_A 4 KQKILIVEDSMTIRRMLIQAIAQQTGLEIDAF-DTLEGARHCQG--DEYVVALVDLTLPDAPSGEAVKVLLE-RGLPVVI 79 (259)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHHHHCCEEEEE-SSTGGGTTCCT--TTEEEEEEESCBTTBTTSHHHHHHHH-TTCCEEE
T ss_pred CCeEEEEECCHHHHHHHHHHHHhcCCeEEEEe-ChHHHHHHhhc--CCCcEEEEeCCCCCCCHHHHHHHHHh-CCCCEEE
Confidence 358999999999999999999764 6777654 55555554443 35999999999999999999999975 3699999
Q ss_pred EEcCCChHHHHhhhhcCCceEEeCCCCH
Q 007940 96 MSVDGETSRVMKGVQHGACDYLLKPIRM 123 (584)
Q Consensus 96 lSa~~d~~~~~~aL~~GAdDYL~KP~~~ 123 (584)
+|+..+.+...+++++||+|||.||+..
T Consensus 80 lt~~~~~~~~~~a~~~Ga~dyl~Kp~~~ 107 (259)
T 3luf_A 80 LTADISEDKREAWLEAGVLDYVMKDSRH 107 (259)
T ss_dssp EECC-CHHHHHHHHHTTCCEEEECSSHH
T ss_pred EEccCCHHHHHHHHHCCCcEEEeCCchh
Confidence 9999999999999999999999999743
No 109
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=99.55 E-value=4.3e-15 Score=170.70 Aligned_cols=119 Identities=11% Similarity=0.184 Sum_probs=108.6
Q ss_pred CEEEEEeCCH-HH-------HHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCC----CCHHHHHHHH
Q 007940 18 LRVLVVDDDL-AW-------LKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPD----MDGFKLLEHV 85 (584)
Q Consensus 18 mrVLIVDDd~-~~-------r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPd----mdGlELL~~I 85 (584)
||||||||+. .. ++.|+..|+..||+|..+.++.+|+..+... ..||+||+|++||+ |+|+++|++|
T Consensus 1 m~ILiVdDd~~~~~~~~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~~~~~-~~~d~vilDi~lp~~~~~~~G~~ll~~i 79 (755)
T 2vyc_A 1 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSN-EAIDCLMFSYQMEHPDEHQNVRQLIGKL 79 (755)
T ss_dssp CEEEEECCTTSTTSHHHHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTT-CCCSEEEEECCCCSHHHHHHHHHHHHHH
T ss_pred CeEEEEeCCccccccccHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcC-CCCcEEEEeCCCCcccccccHHHHHHHH
Confidence 5999999999 88 9999999999999999999999999999863 23999999999999 9999999999
Q ss_pred hcc-CCCCEEEEEcCCC-hHHHHhhhhcCCceEEeCCCCHHH-HHHHHHHHHHhc
Q 007940 86 GLE-MDLPVIMMSVDGE-TSRVMKGVQHGACDYLLKPIRMKE-LRNIWQHVFRKK 137 (584)
Q Consensus 86 r~~-~~iPVIvlSa~~d-~~~~~~aL~~GAdDYL~KP~~~~e-L~~aI~~vlrrk 137 (584)
|.. ..+|||++|+..+ .+....++..||+|||.||++..+ |.+.|++++++.
T Consensus 80 R~~~~~iPIi~lTa~~~~~~d~~~~l~~gaddyi~kpf~~~efl~~ri~a~~rr~ 134 (755)
T 2vyc_A 80 HERQQNVPVFLLGDREKALAAMDRDLLELVDEFAWILEDTADFIAGRAVAAMTRY 134 (755)
T ss_dssp HHHSTTCCEEEEECHHHHHHTCSHHHHHHCSEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred HHhCCCCCEEEEecCCcchhhccHhHhhcCCceEeCCCCCHHHHHHHHHHHHHHh
Confidence 865 4899999999877 777889999999999999999999 888899888764
No 110
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=98.94 E-value=2.2e-08 Score=107.03 Aligned_cols=119 Identities=24% Similarity=0.303 Sum_probs=100.0
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc---CCC
Q 007940 15 PAGLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLE---MDL 91 (584)
Q Consensus 15 p~gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~---~~i 91 (584)
..+.+|++|||+...+..+...|.. .+.+....++.+++. ... ..||+|++|+.||+|+|+++++.++.. ..+
T Consensus 150 ~~~~~ilivdd~~~~~~~i~~~L~~-~~~~~~~~~~~~~~~-~~~--~~~dlil~D~~mp~~dG~~~~~~ir~~~~~~~~ 225 (459)
T 1w25_A 150 GLGGRVLIVDDNERQAQRVAAELGV-EHRPVIESDPEKAKI-SAG--GPVDLVIVNAAAKNFDGLRFTAALRSEERTRQL 225 (459)
T ss_dssp SCSCEEEEECSCHHHHHHHHHHHTT-TSEEEEECCHHHHHH-HHH--SSCSEEEEETTCSSSCHHHHHHHHHTSGGGTTC
T ss_pred CCCCeEEEECCchhhHHHHHHHHhc-ccceeeccCHHHHhh-hcc--CCCCEEEEecCCCCCcHHHHHHHHHhCccccCC
Confidence 4457999999999999999888865 366777778877753 333 348999999999999999999998743 478
Q ss_pred CEEEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHhc
Q 007940 92 PVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 137 (584)
Q Consensus 92 PVIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrrk 137 (584)
|+|++|+..+......+++.|++||+.||+...++...+..+++++
T Consensus 226 pii~lt~~~~~~~~~~~l~~Ga~d~~~kp~~~~~l~~~v~~~~~~~ 271 (459)
T 1w25_A 226 PVLAMVDPDDRGRMVKALEIGVNDILSRPIDPQELSARVKTQIQRK 271 (459)
T ss_dssp CEEEEECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred cEEEEcCCCchHHHHHHHhccccccccCCCCHHHHHHHHHHHHHHH
Confidence 9999999999988899999999999999999999988887776544
No 111
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=98.89 E-value=7e-10 Score=106.73 Aligned_cols=93 Identities=24% Similarity=0.393 Sum_probs=76.8
Q ss_pred CeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc-CCCCEEEEEcCCChHHHHhhhhcCCceEEeCC
Q 007940 42 YEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLE-MDLPVIMMSVDGETSRVMKGVQHGACDYLLKP 120 (584)
Q Consensus 42 y~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~-~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~KP 120 (584)
+.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.++.. +..++++++.....+...++++.||++|+.||
T Consensus 6 ~~v~~~~~~~~a~~~~~~~~--~dlvl~D~~~p~~~g~~~~~~l~~~~~~~~i~vi~~~~~~~~~~~~~~~Ga~~~l~kp 83 (237)
T 3cwo_X 6 LIVDDATNGREAVEKYKELK--PDIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVNT 83 (237)
T ss_dssp EEEECCCSSSTTHHHHHHHC--CSCEEEECCSTTSSHHHHHHHHHHHSSSCCEEEECCSSTHHHHHHHHHTTCCEEEESH
T ss_pred EEEEECCCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHHhCCCCCEEEEECCCCHHHHHHHHHCCHHheEeCC
Confidence 34555788899999988765 9999999999999999999998753 45667777777668889999999999999999
Q ss_pred --CCHHHHHHHHHHHHHh
Q 007940 121 --IRMKELRNIWQHVFRK 136 (584)
Q Consensus 121 --~~~~eL~~aI~~vlrr 136 (584)
+...++...+.+.+..
T Consensus 84 ~~~~~~~l~~~i~~~~~~ 101 (237)
T 3cwo_X 84 AAVENPSLITQIAQTFGS 101 (237)
T ss_dssp HHHHCTHHHHHHHHHHTG
T ss_pred cccChHHHHHHHHHHhCC
Confidence 7777888877776643
No 112
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=97.10 E-value=0.0009 Score=65.97 Aligned_cols=97 Identities=14% Similarity=0.140 Sum_probs=71.1
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCCEE
Q 007940 15 PAGLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVI 94 (584)
Q Consensus 15 p~gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVI 94 (584)
..|.|||||||++..+..|.++|+..|++|..+.. .....+|+||+|..||...+. ..+|
T Consensus 9 l~~~~vlvv~d~~~~~~~l~~~L~~~g~~v~~~~~---------~~~~~~~~ii~d~~~~~~~~~-----------~~~i 68 (254)
T 2ayx_A 9 LSGKRCWLAVRNASLCQFLETSLQRSGIVVTTYEG---------QEPTPEDVLITDEVVSKKWQG-----------RAVV 68 (254)
T ss_dssp TTTEEEEEECCCHHHHHHHHHHHTTTTEEEEECSS---------CCCCTTCEEEEESSCSCCCCS-----------SEEE
T ss_pred cCCCEEEEEcCCHHHHHHHHHHHHHCCCEEEEecC---------CCCCcCcEEEEcCCCcccccc-----------ceEE
Confidence 46889999999999999999999999999987764 112459999999999886432 1255
Q ss_pred EEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHH
Q 007940 95 MMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFR 135 (584)
Q Consensus 95 vlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlr 135 (584)
.++..... .....+...++.||+...++...+.+++.
T Consensus 69 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 105 (254)
T 2ayx_A 69 TFCRRHIG----IPLEKAPGEWVHSVAAPHELPALLARIYL 105 (254)
T ss_dssp EECSSCCC----SCCTTSTTEEEECSSCCSHHHHHHHHHHT
T ss_pred EEecccCC----CcccccCCceeccccchHHHHHHHHHHhh
Confidence 55543211 11233456789999998888888777653
No 113
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=96.78 E-value=0.0031 Score=72.16 Aligned_cols=103 Identities=16% Similarity=0.148 Sum_probs=76.9
Q ss_pred HHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCCEEEEEcCCChHHHHh
Q 007940 29 WLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGL-EMDLPVIMMSVDGETSRVMK 107 (584)
Q Consensus 29 ~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~-~~~iPVIvlSa~~d~~~~~~ 107 (584)
..+.|.+.|++.||+|..+.+..+|+..+++. ..+++||+|+.|+ +.+++++|+. ...+||++++.......+.-
T Consensus 18 ~i~~L~~~Le~~g~~V~~a~s~~Da~~~i~~~-~~i~avIld~d~~---~~~ll~~Ir~~~~~iPVFl~~~~~~~~~~~~ 93 (715)
T 3n75_A 18 PIRELHRALERLNFQIVYPNDRDDLLKLIENN-ARLCGVIFDWDKY---NLELCEEISKMNENLPLYAFANTYSTLDVSL 93 (715)
T ss_dssp HHHHHHHHHHHTTCEEECCSSHHHHHHHHHHC-TTEEEEEEEHHHH---HHHHHHHHHHHCTTCEEEEECCTTCCCCGGG
T ss_pred HHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhC-CCceEEEEecccc---HHHHHHHHHHhCCCCCEEEEecCCcccccch
Confidence 44566688999999999999999999999875 3599999999886 7899999975 46999999988754333322
Q ss_pred hhhcCCceEEeCCCCHHH-HHHHHHHHHH
Q 007940 108 GVQHGACDYLLKPIRMKE-LRNIWQHVFR 135 (584)
Q Consensus 108 aL~~GAdDYL~KP~~~~e-L~~aI~~vlr 135 (584)
..-.++++|+.+.....+ +...|.+..+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (715)
T 3n75_A 94 NDLRLQISFFEYALGAAEDIANKIKQTTD 122 (715)
T ss_dssp TTSCCEEEEECCCTTCHHHHHHHHHHHHH
T ss_pred hhhhccCeEEEeCCCCHHHHHHHHHHHHH
Confidence 224578899998875444 4444544443
No 114
>3sft_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; modified doubly-wound/fold, chemoreceptor; 2.15A {Thermotoga maritima}
Probab=95.86 E-value=0.00069 Score=65.59 Aligned_cols=68 Identities=21% Similarity=0.297 Sum_probs=58.2
Q ss_pred HHHhcccccCHHHHHhhhCCCCCchHH-----HHhhhHH--HHHHHHhhhhh---hhhhccCCCccCCCCCCCCCCcccc
Q 007940 217 VNQIGFDKVGPKKILDLMNVPWLTREN-----VASHLQK--YRLYLTRLQKD---ELKTSVGGIKQKDSPSKDSAASFGI 286 (584)
Q Consensus 217 v~~iG~s~~~Pk~Il~~m~v~~Lt~~~-----V~sHlqk--yr~~~~RL~~~---~~~~~~~g~~~~~~~~~~~~~~~~~ 286 (584)
+..||+|++||++|.+++ ..|+.+. |+|||+. +..+++||+.. .++++.+|+.+++...+..++++.+
T Consensus 9 vV~IGaStGG~~AL~~~l--~~LP~~~~~~ivivQHm~~~f~~~la~~L~~~~~l~V~ea~dg~~l~pG~vYiaP~~~hl 86 (193)
T 3sft_A 9 IVVIGSSTGGPRSLDMII--PNLPKNFPAPIVVVQHMPPGFTKSLAMRLDSTSELTVKEAEDGEEVKPGFVYIAPGDFHL 86 (193)
T ss_dssp EEEEEECTTHHHHHTTTG--GGSCTTCSSCEEEEECCCTTCHHHHHHHHHHHCSSEEEECCTTCBCCTTEEEECCTTSEE
T ss_pred EEEEEeCCCCHHHHHHHH--HhCCCCCCCeEEEEECCCCCcHHHHHHHHhccCCCcEEEeCCCCEecCCEEEEcCCCcEE
Confidence 567899999999999999 7777765 9999998 68899999887 7999999999999877777766654
No 115
>1chd_A CHEB methylesterase; chemotaxis protein, serine hydrolase, carboxyl methylesteras; 1.75A {Salmonella typhimurium} SCOP: c.40.1.1
Probab=95.72 E-value=0.0012 Score=64.41 Aligned_cols=68 Identities=18% Similarity=0.212 Sum_probs=57.7
Q ss_pred HHHhcccccCHHHHHhhhCCCCCchHH----HHhhhHH--HHHHHHhhhhh---hhhhccCCCccCCCCCCCCCCcccc
Q 007940 217 VNQIGFDKVGPKKILDLMNVPWLTREN----VASHLQK--YRLYLTRLQKD---ELKTSVGGIKQKDSPSKDSAASFGI 286 (584)
Q Consensus 217 v~~iG~s~~~Pk~Il~~m~v~~Lt~~~----V~sHlqk--yr~~~~RL~~~---~~~~~~~g~~~~~~~~~~~~~~~~~ 286 (584)
+..||+|++||++|.+++ ..|+.+. |+|||+. +..+++||+.. .++++.+|+.+++...+..++++.+
T Consensus 12 vV~IGaStGG~~AL~~~l--~~LP~~~~~ivivQHm~~~f~~~la~~L~~~~~l~V~ea~dg~~l~pg~vYiaP~~~hl 88 (203)
T 1chd_A 12 LIAIGASTGGTEAIRHVL--QPLPLSSPAVIITQHMPPGFTRSFAERLNKLCQISVKEAEDGERVLPGHAYIAPGDKHM 88 (203)
T ss_dssp EEEEEECTTHHHHHHHHH--TTCCTTSCEEEEEECCCTTHHHHHHHHHHHHCSSEEEECCTTCBCCTTEEEECCTTSEE
T ss_pred EEEEEeCCCCHHHHHHHH--HhCCCCCCeEEEEECCCCchHHHHHHHHcCcCCCcEEECCCCCEecCCEEEEcCCCceE
Confidence 567899999999999999 6666654 8999998 68899999887 7899999999999987777776653
No 116
>3q7r_A Transcriptional regulatory protein; CHXR, receiver domain, transcription factor, OMPR, chlamydia transcription; 1.60A {Chlamydia trachomatis} PDB: 3q7s_A* 3q7t_A
Probab=95.44 E-value=0.035 Score=48.27 Aligned_cols=101 Identities=16% Similarity=0.237 Sum_probs=78.7
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCC-CCCCHHHHHHHHhc---cCCCCEE
Q 007940 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNM-PDMDGFKLLEHVGL---EMDLPVI 94 (584)
Q Consensus 19 rVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~M-PdmdGlELL~~Ir~---~~~iPVI 94 (584)
.||+|..+-...-.+++++....|++++...-. .....|+|++...+ |. .|.. ....-+|
T Consensus 14 ~iL~VtEd~~ls~QlKel~~~~eY~~~is~~~~--------~e~~AdlIfCEYlLLPe--------~ifS~k~~~~~dli 77 (121)
T 3q7r_A 14 HVLLVSEHWDLFFQTKELLNPEEYRCTIGQQYK--------QELSADLVVCEYSLLPR--------EIRSPKSLEGSFVL 77 (121)
T ss_dssp EEEEECSCHHHHHHHHHHSCTTTEEEEEESSCC--------CCTTEEEEEEEGGGSCT--------TCCCCTTCCSCEEE
T ss_pred EEEEEecCchhhHHHHHhcCCcceeEEeccccC--------CcccceeEEEeeecChH--------HhcCCCCCCcccEE
Confidence 689999999999999999988889988764321 11237999999864 42 2221 1234578
Q ss_pred EEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 007940 95 MMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 136 (584)
Q Consensus 95 vlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrr 136 (584)
++-..-+.+.+++.++.||. |++.|+...-|.++|+..++.
T Consensus 78 VLfD~F~EEa~v~vLd~Ga~-yLlrPIT~kvldAvIraFLrq 118 (121)
T 3q7r_A 78 VLLDFFDEETSVDLLDRGFW-YLIRPITPRILKSAISLFLSQ 118 (121)
T ss_dssp EEESSCCHHHHHHHHHTTCE-EEESCCCHHHHHHHHHHHHHH
T ss_pred EEehhhchHHHHHHHhCCce-eEeccCcHHHHHHHHHHHHhc
Confidence 88888889999999999999 999999999999999988764
No 117
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=95.31 E-value=0.075 Score=50.20 Aligned_cols=81 Identities=21% Similarity=0.341 Sum_probs=62.4
Q ss_pred CHHHHHHHHHhcCCCceEEEEec-CCCCCCH--HHHHHHHhccCCCCEEEEEcCCChHHHHhhhhcCCceEE------eC
Q 007940 49 LARDALSLLRERKDGYDIVISDV-NMPDMDG--FKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYL------LK 119 (584)
Q Consensus 49 ~~~eAL~~L~~~~~~pDLVIlDi-~MPdmdG--lELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL------~K 119 (584)
+..+.+..+.... ..++++.++ .++.++| .+++++++...++|||.+++....+...++++.||++++ .+
T Consensus 131 ~~~~~i~~~~~~~-~~~vli~~~~~~g~~~g~~~~~i~~~~~~~~~Pvia~~g~~~~~~~~~~~~~G~~~~~vg~a~~~~ 209 (237)
T 3cwo_X 131 LLRDWVVEVEKRG-AGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFR 209 (237)
T ss_dssp EHHHHHHHHHHHT-CSEEEEEETTTTTCCSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHHTCSEEEESHHHHTT
T ss_pred CHHHHHHHHhhcC-CCeEEEEecCCCCccccccHHHHHHHHHhcCCCEEecCCCCCHHHHHHHHHcCcHHHhhhHHHHcC
Confidence 4556666665542 356889997 6666777 456777766678999999999999999999999999985 68
Q ss_pred CCCHHHHHHHH
Q 007940 120 PIRMKELRNIW 130 (584)
Q Consensus 120 P~~~~eL~~aI 130 (584)
|+...++++.+
T Consensus 210 ~~~~~~~~~~l 220 (237)
T 3cwo_X 210 EIDVRELKEYL 220 (237)
T ss_dssp SSCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 99888887654
No 118
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=94.37 E-value=0.67 Score=42.95 Aligned_cols=119 Identities=14% Similarity=0.153 Sum_probs=80.7
Q ss_pred CCCEEEEE----eCCHHHHHHHHHHHHhCCCeEEEE---CCHHHHHHHHHhcCCCceEEEEecCCCC-CC-HHHHHHHHh
Q 007940 16 AGLRVLVV----DDDLAWLKILEKMLKKCSYEVTTC---GLARDALSLLRERKDGYDIVISDVNMPD-MD-GFKLLEHVG 86 (584)
Q Consensus 16 ~gmrVLIV----DDd~~~r~~L~~lL~~~gy~V~~a---~~~~eAL~~L~~~~~~pDLVIlDi~MPd-md-GlELL~~Ir 86 (584)
.+.||++. |-+..=...+..+|+..||+|+.. ...++.++.+.+.. +|+|.+-..+.. +. --++++.++
T Consensus 17 ~~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~~p~e~lv~aa~~~~--~diV~lS~~~~~~~~~~~~~i~~L~ 94 (161)
T 2yxb_A 17 RRYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQTPEQVAMAAVQED--VDVIGVSILNGAHLHLMKRLMAKLR 94 (161)
T ss_dssp CSCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSBCCHHHHHHHHHHTT--CSEEEEEESSSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhcC--CCEEEEEeechhhHHHHHHHHHHHH
Confidence 35689988 888888899999999999999843 35677888887754 999999887653 21 234455555
Q ss_pred cc--CCCCEEEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHhc
Q 007940 87 LE--MDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 137 (584)
Q Consensus 87 ~~--~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrrk 137 (584)
.. .+++|+ +.+..-......+.+.||+.++..--+..+....+++++.++
T Consensus 95 ~~g~~~i~v~-vGG~~~~~~~~~l~~~G~d~v~~~~~~~~~~~~~~~~~~~~~ 146 (161)
T 2yxb_A 95 ELGADDIPVV-LGGTIPIPDLEPLRSLGIREIFLPGTSLGEIIEKVRKLAEEK 146 (161)
T ss_dssp HTTCTTSCEE-EEECCCHHHHHHHHHTTCCEEECTTCCHHHHHHHHHHHHHHH
T ss_pred hcCCCCCEEE-EeCCCchhcHHHHHHCCCcEEECCCCCHHHHHHHHHHHHHHh
Confidence 43 256655 445444444445668999876655455566667676666543
No 119
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=89.86 E-value=1.3 Score=43.37 Aligned_cols=99 Identities=12% Similarity=0.214 Sum_probs=67.9
Q ss_pred CCEEEEEeC----CHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEecC------CCCCCHHHHHHHH
Q 007940 17 GLRVLVVDD----DLAWLKILEKMLKKCSYEVT-TCGLARDALSLLRERKDGYDIVISDVN------MPDMDGFKLLEHV 85 (584)
Q Consensus 17 gmrVLIVDD----d~~~r~~L~~lL~~~gy~V~-~a~~~~eAL~~L~~~~~~pDLVIlDi~------MPdmdGlELL~~I 85 (584)
|..+++++- ++.....+.+.+++.|..+. .+.+.+++..+.+. ++|+|.+... .+...++++++++
T Consensus 101 Gad~I~l~~~~~~~p~~l~~~i~~~~~~g~~v~~~v~t~eea~~a~~~---Gad~Ig~~~~g~t~~~~~~~~~~~li~~l 177 (229)
T 3q58_A 101 GADIIAFDASFRSRPVDIDSLLTRIRLHGLLAMADCSTVNEGISCHQK---GIEFIGTTLSGYTGPITPVEPDLAMVTQL 177 (229)
T ss_dssp TCSEEEEECCSSCCSSCHHHHHHHHHHTTCEEEEECSSHHHHHHHHHT---TCSEEECTTTTSSSSCCCSSCCHHHHHHH
T ss_pred CCCEEEECccccCChHHHHHHHHHHHHCCCEEEEecCCHHHHHHHHhC---CCCEEEecCccCCCCCcCCCCCHHHHHHH
Confidence 445555553 23334444455566676654 66778888776653 4898865332 2334568999998
Q ss_pred hccCCCCEEEEEcCCChHHHHhhhhcCCceEEeC
Q 007940 86 GLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLK 119 (584)
Q Consensus 86 r~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~K 119 (584)
+.. ++|||.-.+-.+.+.+.+++++||+.+++=
T Consensus 178 ~~~-~ipvIA~GGI~t~~d~~~~~~~GadgV~VG 210 (229)
T 3q58_A 178 SHA-GCRVIAEGRYNTPALAANAIEHGAWAVTVG 210 (229)
T ss_dssp HTT-TCCEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHc-CCCEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence 765 899998888788899999999999999863
No 120
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1
Probab=89.37 E-value=1.7 Score=43.73 Aligned_cols=99 Identities=18% Similarity=0.083 Sum_probs=67.1
Q ss_pred HHHHHHHhCCCeEE--EECCHHHHHHHHHhcCCCceEEEEecCCC-----CCCHHHHHHHHhccCCCCEEEEEcCCChHH
Q 007940 32 ILEKMLKKCSYEVT--TCGLARDALSLLRERKDGYDIVISDVNMP-----DMDGFKLLEHVGLEMDLPVIMMSVDGETSR 104 (584)
Q Consensus 32 ~L~~lL~~~gy~V~--~a~~~~eAL~~L~~~~~~pDLVIlDi~MP-----dmdGlELL~~Ir~~~~iPVIvlSa~~d~~~ 104 (584)
...+.|.+.||.|. ++.+...|..+ .+. ++++| +.+..| +..-+++++.+++..++|||+=..-...+.
T Consensus 126 ~aa~~L~~~Gf~Vlpy~~dd~~~akrl-~~~--G~~aV-mPlg~pIGsG~Gi~~~~lI~~I~e~~~vPVI~eGGI~TPsD 201 (265)
T 1wv2_A 126 KAAEQLVKDGFDVMVYTSDDPIIARQL-AEI--GCIAV-MPLAGLIGSGLGICNPYNLRIILEEAKVPVLVDAGVGTASD 201 (265)
T ss_dssp HHHHHHHTTTCEEEEEECSCHHHHHHH-HHS--CCSEE-EECSSSTTCCCCCSCHHHHHHHHHHCSSCBEEESCCCSHHH
T ss_pred HHHHHHHHCCCEEEEEeCCCHHHHHHH-HHh--CCCEE-EeCCccCCCCCCcCCHHHHHHHHhcCCCCEEEeCCCCCHHH
Confidence 34455667799987 55555555444 333 37777 555544 222378999998778999998666788899
Q ss_pred HHhhhhcCCceEE-----eCCCCHHHHHHHHHHHH
Q 007940 105 VMKGVQHGACDYL-----LKPIRMKELRNIWQHVF 134 (584)
Q Consensus 105 ~~~aL~~GAdDYL-----~KP~~~~eL~~aI~~vl 134 (584)
+..++++||+..+ .|--++..+...+..++
T Consensus 202 Aa~AmeLGAdgVlVgSAI~~a~dP~~ma~af~~Av 236 (265)
T 1wv2_A 202 AAIAMELGCEAVLMNTAIAHAKDPVMMAEAMKHAI 236 (265)
T ss_dssp HHHHHHHTCSEEEESHHHHTSSSHHHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHH
Confidence 9999999999987 44444555555555544
No 121
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=88.57 E-value=3.7 Score=42.54 Aligned_cols=113 Identities=14% Similarity=0.146 Sum_probs=75.3
Q ss_pred CCCCCCCCCCCCEEEEEeCCHHHHHHHHHHHHhC---CCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHH
Q 007940 7 SPRNDTFNPAGLRVLVVDDDLAWLKILEKMLKKC---SYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLE 83 (584)
Q Consensus 7 ~p~~~~f~p~gmrVLIVDDd~~~r~~L~~lL~~~---gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~ 83 (584)
+.++..|.-..+|++|+|.|....+.|.++|.+. .+++..+++.+.+.+.+++.+ +|++|+|-.+....
T Consensus 11 ~~~~~~~~~~~i~l~i~d~d~~Y~~~l~~y~~~~~~~~~~v~~ft~~e~~~~~~~~~~--~dilli~e~~~~~~------ 82 (373)
T 3fkq_A 11 HHENLYFQGMKIKVALLDKDKEYLDRLTGVFNTKYADKLEVYSFTDEKNAIESVKEYR--IDVLIAEEDFNIDK------ 82 (373)
T ss_dssp ---------CCEEEEEECSCHHHHHHHHHHHHHHTTTTEEEEEESCHHHHHHHHHHHT--CSEEEEETTCCCCG------
T ss_pred cccchhccCceEEEEEEeCCHHHHHHHHHHHhhccCCceEEEEECCHHHHHHHHhcCC--CCEEEEcchhhhhh------
Confidence 4577778778899999999999999999999643 588999999999999888754 99999998775421
Q ss_pred HHhccCCCCEEEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHH
Q 007940 84 HVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVF 134 (584)
Q Consensus 84 ~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vl 134 (584)
.......++++++.....+. ..-...+.|--+.+++.+.+...+
T Consensus 83 -~~~~~~~~v~~l~~~~~~~~------~~~~~~i~kyq~~~~i~~ei~~~~ 126 (373)
T 3fkq_A 83 -SEFKRNCGLAYFTGTPGIEL------IKDEIAICKYQRVDVIFKQILGVY 126 (373)
T ss_dssp -GGGCSSCEEEEEESCTTCCE------ETTEEEEETTSCHHHHHHHHHHHH
T ss_pred -hhhcccCcEEEEECCCCCCc------CCCCceeeccCCHHHHHHHHHHHH
Confidence 11123456777765432211 111246888888888877666655
No 122
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=87.33 E-value=2.3 Score=41.64 Aligned_cols=99 Identities=17% Similarity=0.224 Sum_probs=66.8
Q ss_pred CCEEEEEeC----CHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEecC------CCCCCHHHHHHHH
Q 007940 17 GLRVLVVDD----DLAWLKILEKMLKKCSYEVT-TCGLARDALSLLRERKDGYDIVISDVN------MPDMDGFKLLEHV 85 (584)
Q Consensus 17 gmrVLIVDD----d~~~r~~L~~lL~~~gy~V~-~a~~~~eAL~~L~~~~~~pDLVIlDi~------MPdmdGlELL~~I 85 (584)
|..+++++- ++.....+.+.+++.|..+. .+.+.+++..+... ++|+|.+... .+...++++++++
T Consensus 101 Gad~V~l~~~~~~~p~~l~~~i~~~~~~g~~v~~~v~t~eea~~a~~~---Gad~Ig~~~~g~t~~~~~~~~~~~~i~~l 177 (232)
T 3igs_A 101 GAAIIAVDGTARQRPVAVEALLARIHHHHLLTMADCSSVDDGLACQRL---GADIIGTTMSGYTTPDTPEEPDLPLVKAL 177 (232)
T ss_dssp TCSEEEEECCSSCCSSCHHHHHHHHHHTTCEEEEECCSHHHHHHHHHT---TCSEEECTTTTSSSSSCCSSCCHHHHHHH
T ss_pred CCCEEEECccccCCHHHHHHHHHHHHHCCCEEEEeCCCHHHHHHHHhC---CCCEEEEcCccCCCCCCCCCCCHHHHHHH
Confidence 445555543 23334444455566676654 56778888776653 3888865322 1233468899998
Q ss_pred hccCCCCEEEEEcCCChHHHHhhhhcCCceEEeC
Q 007940 86 GLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLK 119 (584)
Q Consensus 86 r~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~K 119 (584)
+.. ++|||.-.+-.+.+.+.+++++||+.+++=
T Consensus 178 ~~~-~ipvIA~GGI~t~~d~~~~~~~GadgV~VG 210 (232)
T 3igs_A 178 HDA-GCRVIAEGRYNSPALAAEAIRYGAWAVTVG 210 (232)
T ss_dssp HHT-TCCEEEESCCCSHHHHHHHHHTTCSEEEEC
T ss_pred Hhc-CCcEEEECCCCCHHHHHHHHHcCCCEEEEe
Confidence 765 899998887778899999999999998763
No 123
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=82.49 E-value=12 Score=33.42 Aligned_cols=112 Identities=9% Similarity=-0.049 Sum_probs=71.0
Q ss_pred EEEEE----eCCHHHHHHHHHHHHhCCCeEE---EECCHHHHHHHHHhcCCCceEEEEecCCCC-CC-HHHHHHHHhcc-
Q 007940 19 RVLVV----DDDLAWLKILEKMLKKCSYEVT---TCGLARDALSLLRERKDGYDIVISDVNMPD-MD-GFKLLEHVGLE- 88 (584)
Q Consensus 19 rVLIV----DDd~~~r~~L~~lL~~~gy~V~---~a~~~~eAL~~L~~~~~~pDLVIlDi~MPd-md-GlELL~~Ir~~- 88 (584)
||++. |-|..=...+..+|+..||+|+ .....++.++.+.+.. +|+|.+-..+.. +. .-++++.+++.
T Consensus 5 ~vvla~~~~d~HdiG~~~v~~~l~~~G~~Vi~lG~~~p~e~~v~~a~~~~--~d~v~lS~~~~~~~~~~~~~i~~l~~~g 82 (137)
T 1ccw_A 5 TIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNIGVLSPQELFIKAAIETK--ADAILVSSLYGQGEIDCKGLRQKCDEAG 82 (137)
T ss_dssp EEEEEEETTCCCCHHHHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHHT--CSEEEEEECSSTHHHHHTTHHHHHHHTT
T ss_pred EEEEEeCCCchhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhcC--CCEEEEEecCcCcHHHHHHHHHHHHhcC
Confidence 55554 3455566788899999999988 4456788888888765 899999887743 11 12345555433
Q ss_pred C-CCCEEEEEcCC---ChH---HHHhhhhcCCceEEeCCCCHHHHHHHHHHH
Q 007940 89 M-DLPVIMMSVDG---ETS---RVMKGVQHGACDYLLKPIRMKELRNIWQHV 133 (584)
Q Consensus 89 ~-~iPVIvlSa~~---d~~---~~~~aL~~GAdDYL~KP~~~~eL~~aI~~v 133 (584)
. +++| ++.+.. ..+ ....+.++|++.|+.---...++...+...
T Consensus 83 ~~~i~v-~vGG~~~~~~~~~~~~~~~~~~~G~d~~~~~g~~~~~~~~~l~~~ 133 (137)
T 1ccw_A 83 LEGILL-YVGGNIVVGKQHWPDVEKRFKDMGYDRVYAPGTPPEVGIADLKKD 133 (137)
T ss_dssp CTTCEE-EEEESCSSSSCCHHHHHHHHHHTTCSEECCTTCCHHHHHHHHHHH
T ss_pred CCCCEE-EEECCCcCchHhhhhhHHHHHHCCCCEEECCCCCHHHHHHHHHHH
Confidence 2 4555 454432 111 133477899988886656666666555443
No 124
>2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus}
Probab=80.97 E-value=4.8 Score=40.57 Aligned_cols=98 Identities=15% Similarity=0.035 Sum_probs=63.7
Q ss_pred HHHHHhCCCeEE--EECCHHHHHHHHHhcCCCceEEEEecCCCCCC-----HHHHHHHHhc-cCC-CCEEEEEcCCChHH
Q 007940 34 EKMLKKCSYEVT--TCGLARDALSLLRERKDGYDIVISDVNMPDMD-----GFKLLEHVGL-EMD-LPVIMMSVDGETSR 104 (584)
Q Consensus 34 ~~lL~~~gy~V~--~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmd-----GlELL~~Ir~-~~~-iPVIvlSa~~d~~~ 104 (584)
.+.|.+.||.|. +..+...| +.+.+.. +++| +.+..|-.. -.++++.++. ..+ +|||+=..-...+.
T Consensus 117 a~~L~k~Gf~Vlpy~~~D~~~a-k~l~~~G--~~aV-mPlg~pIGsG~Gi~~~~~L~~i~~~~~~~vPVI~~GGI~tpsD 192 (268)
T 2htm_A 117 AERLIEEDFLVLPYMGPDLVLA-KRLAALG--TATV-MPLAAPIGSGWGVRTRALLELFAREKASLPPVVVDAGLGLPSH 192 (268)
T ss_dssp HHHHHHTTCEECCEECSCHHHH-HHHHHHT--CSCB-EEBSSSTTTCCCSTTHHHHHHHHHTTTTSSCBEEESCCCSHHH
T ss_pred HHHHHHCCCEEeeccCCCHHHH-HHHHhcC--CCEE-EecCccCcCCcccCCHHHHHHHHHhcCCCCeEEEeCCCCCHHH
Confidence 344556699877 44555443 3344433 6666 665554222 2567888876 567 99998666788899
Q ss_pred HHhhhhcCCceEE-----eCCCCHHHHHHHHHHHHH
Q 007940 105 VMKGVQHGACDYL-----LKPIRMKELRNIWQHVFR 135 (584)
Q Consensus 105 ~~~aL~~GAdDYL-----~KP~~~~eL~~aI~~vlr 135 (584)
+..++++||+..+ .|--++..+..++..++.
T Consensus 193 Aa~AmeLGAdgVlVgSAI~~a~dP~~ma~af~~Av~ 228 (268)
T 2htm_A 193 AAEVMELGLDAVLVNTAIAEAQDPPAMAEAFRLAVE 228 (268)
T ss_dssp HHHHHHTTCCEEEESHHHHTSSSHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHHH
Confidence 9999999999986 454445555555555443
No 125
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=78.29 E-value=14 Score=38.61 Aligned_cols=99 Identities=20% Similarity=0.290 Sum_probs=66.3
Q ss_pred CCCEEEEEe----CCHHHHHHHHHHHHhC-CCeEE--EECCHHHHHHHHHhcCCCceEEEEecCCCC------------C
Q 007940 16 AGLRVLVVD----DDLAWLKILEKMLKKC-SYEVT--TCGLARDALSLLRERKDGYDIVISDVNMPD------------M 76 (584)
Q Consensus 16 ~gmrVLIVD----Dd~~~r~~L~~lL~~~-gy~V~--~a~~~~eAL~~L~~~~~~pDLVIlDi~MPd------------m 76 (584)
++..+++|| +.....+.++.+-+.. +..|+ .+.+.++|..+.+. +.|.|.+-+. |+ .
T Consensus 119 aGvd~I~idta~G~~~~~~~~I~~ik~~~p~v~Vi~G~v~t~e~A~~a~~a---GAD~I~vG~g-pGs~~~tr~~~g~g~ 194 (366)
T 4fo4_A 119 AGVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEA---GVSAVKVGIG-PGSICTTRIVTGVGV 194 (366)
T ss_dssp TTCSEEEEECSCTTSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHHH---TCSEEEECSS-CSTTBCHHHHHCCCC
T ss_pred CCCCEEEEeCCCCCCHHHHHHHHHHHHhcCCCceEeeeeCCHHHHHHHHHc---CCCEEEEecC-CCCCCCcccccCccc
Confidence 356677775 3455666666766665 44443 47788888887654 3788888321 22 2
Q ss_pred CHHHHHHHHh---ccCCCCEEEEEcCCChHHHHhhhhcCCceEEe
Q 007940 77 DGFKLLEHVG---LEMDLPVIMMSVDGETSRVMKGVQHGACDYLL 118 (584)
Q Consensus 77 dGlELL~~Ir---~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~ 118 (584)
..++++..+. ....+|||.--.-.+...+.+++.+||+....
T Consensus 195 p~~~~l~~v~~~~~~~~iPVIA~GGI~~~~di~kala~GAd~V~v 239 (366)
T 4fo4_A 195 PQITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMV 239 (366)
T ss_dssp CHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred chHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 3455665553 23579999877777888899999999988754
No 126
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=77.46 E-value=23 Score=34.84 Aligned_cols=112 Identities=13% Similarity=0.076 Sum_probs=72.3
Q ss_pred CCCCEEEEE----eCCHHHHHHHHHHHHhCCCeEEEE---CCHHHHHHHHHhcCCCceEEEEecCCCC-CCH-HHHHHHH
Q 007940 15 PAGLRVLVV----DDDLAWLKILEKMLKKCSYEVTTC---GLARDALSLLRERKDGYDIVISDVNMPD-MDG-FKLLEHV 85 (584)
Q Consensus 15 p~gmrVLIV----DDd~~~r~~L~~lL~~~gy~V~~a---~~~~eAL~~L~~~~~~pDLVIlDi~MPd-mdG-lELL~~I 85 (584)
..+.+||+. |-|..=...+..+|+..||+|+.. ...++.++.+.+.+ ||+|.+-..|.. +.. -++++.+
T Consensus 121 ~~~~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~vp~e~l~~~~~~~~--~d~V~lS~l~~~~~~~~~~~i~~l 198 (258)
T 2i2x_B 121 KTKGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRDVPAEEVLAAVQKEK--PIMLTGTALMTTTMYAFKEVNDML 198 (258)
T ss_dssp CCSCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEECCSHHHHHHHHHHC--CSEEEEECCCTTTTTHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEEeeccCCHHHHHHHHHHH
Confidence 345688888 667788889999999999998633 34567777777655 999999887753 443 3566677
Q ss_pred hcc-CCCCEEEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHH
Q 007940 86 GLE-MDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVF 134 (584)
Q Consensus 86 r~~-~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vl 134 (584)
+.. ..+||++--.....+. . -..||+.|..-. .+....+++++
T Consensus 199 ~~~~~~~~v~vGG~~~~~~~-~--~~igad~~~~da---~~av~~~~~l~ 242 (258)
T 2i2x_B 199 LENGIKIPFACGGGAVNQDF-V--SQFALGVYGEEA---ADAPKIADAII 242 (258)
T ss_dssp HTTTCCCCEEEESTTCCHHH-H--HTSTTEEECSST---THHHHHHHHHH
T ss_pred HhcCCCCcEEEECccCCHHH-H--HHcCCeEEECCH---HHHHHHHHHHH
Confidence 543 4567665433333332 2 267887775544 34444444444
No 127
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=76.43 E-value=14 Score=39.20 Aligned_cols=99 Identities=17% Similarity=0.286 Sum_probs=65.0
Q ss_pred CCEEEEEe----CCHHHHHHHHHHHHhCCCeEE--EECCHHHHHHHHHhcCCCceEEEEecC-------C----CCCCHH
Q 007940 17 GLRVLVVD----DDLAWLKILEKMLKKCSYEVT--TCGLARDALSLLRERKDGYDIVISDVN-------M----PDMDGF 79 (584)
Q Consensus 17 gmrVLIVD----Dd~~~r~~L~~lL~~~gy~V~--~a~~~~eAL~~L~~~~~~pDLVIlDi~-------M----PdmdGl 79 (584)
|..++++| +.....+.++.+-+..+..|. .+.+.++|..+++. +.|.|++-.. . .+...+
T Consensus 156 GvdvIvldta~G~~~~~~e~I~~ik~~~~i~Vi~g~V~t~e~A~~a~~a---GAD~I~vG~g~Gs~~~tr~~~g~g~p~~ 232 (400)
T 3ffs_A 156 GVDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGNVVTEEATKELIEN---GADGIKVGIGPGSICTTRIVAGVGVPQI 232 (400)
T ss_dssp TCSEEEECCSCCSBHHHHHHHHHHHTTCCCEEEEEEECSHHHHHHHHHT---TCSEEEECC---------CCSCBCCCHH
T ss_pred CCCEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEeecCCHHHHHHHHHc---CCCEEEEeCCCCcCcccccccccchhHH
Confidence 35677775 234455666666555565554 57788888777653 3899988321 0 112346
Q ss_pred HHHHHHhc---cCCCCEEEEEcCCChHHHHhhhhcCCceEEe
Q 007940 80 KLLEHVGL---EMDLPVIMMSVDGETSRVMKGVQHGACDYLL 118 (584)
Q Consensus 80 ELL~~Ir~---~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~ 118 (584)
+++..+.. ...+|||.-..-.+...+.+++.+||+...+
T Consensus 233 ~al~~v~~~~~~~~IPVIA~GGI~~~~di~kalalGAd~V~v 274 (400)
T 3ffs_A 233 TAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMI 274 (400)
T ss_dssp HHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHTTTCSEEEE
T ss_pred HHHHHHHHHHHhcCCCEEecCCCCCHHHHHHHHHcCCCEEEE
Confidence 66666532 2479999877777889999999999998765
No 128
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=74.64 E-value=30 Score=32.21 Aligned_cols=113 Identities=11% Similarity=-0.022 Sum_probs=64.2
Q ss_pred CCEEEEEeCCH--HHHHHHHHHHHhCCCeEEEE----CCHHHHHHHHHhcCCCceEEEEecCCC----CCCHHHHHHHHh
Q 007940 17 GLRVLVVDDDL--AWLKILEKMLKKCSYEVTTC----GLARDALSLLRERKDGYDIVISDVNMP----DMDGFKLLEHVG 86 (584)
Q Consensus 17 gmrVLIVDDd~--~~r~~L~~lL~~~gy~V~~a----~~~~eAL~~L~~~~~~pDLVIlDi~MP----dmdGlELL~~Ir 86 (584)
|...+++-+.+ .....+.+.+++.|..+... .+..+.+..+.+. +.|.|.++.... ...+++.+++++
T Consensus 77 Gad~v~v~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~t~~~~~~~~~~~--g~d~i~v~~g~~g~~~~~~~~~~i~~l~ 154 (211)
T 3f4w_A 77 GADYVTVLGVTDVLTIQSCIRAAKEAGKQVVVDMICVDDLPARVRLLEEA--GADMLAVHTGTDQQAAGRKPIDDLITML 154 (211)
T ss_dssp TCSEEEEETTSCHHHHHHHHHHHHHHTCEEEEECTTCSSHHHHHHHHHHH--TCCEEEEECCHHHHHTTCCSHHHHHHHH
T ss_pred CCCEEEEeCCCChhHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHc--CCCEEEEcCCCcccccCCCCHHHHHHHH
Confidence 44445555543 34455666667777666532 3443434444443 268877662110 113567888887
Q ss_pred cc-CCCCEEEEEcCCChHHHHhhhhcCCceEEe-----CCCCHHHHHHHHHH
Q 007940 87 LE-MDLPVIMMSVDGETSRVMKGVQHGACDYLL-----KPIRMKELRNIWQH 132 (584)
Q Consensus 87 ~~-~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~-----KP~~~~eL~~aI~~ 132 (584)
.. +++||++-.+- ..+.+.+++++||+.+++ +.-++.+..+.++.
T Consensus 155 ~~~~~~~i~~~gGI-~~~~~~~~~~~Gad~vvvGsai~~~~d~~~~~~~l~~ 205 (211)
T 3f4w_A 155 KVRRKARIAVAGGI-SSQTVKDYALLGPDVVIVGSAITHAADPAGEARKISQ 205 (211)
T ss_dssp HHCSSCEEEEESSC-CTTTHHHHHTTCCSEEEECHHHHTCSSHHHHHHHHHH
T ss_pred HHcCCCcEEEECCC-CHHHHHHHHHcCCCEEEECHHHcCCCCHHHHHHHHHH
Confidence 55 47888765444 477788899999998764 44444443333333
No 129
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=74.61 E-value=19 Score=41.13 Aligned_cols=117 Identities=12% Similarity=0.032 Sum_probs=76.5
Q ss_pred CCEEEEE----eCCHHHHHHHHHHHHhCCCeEEEEC---CHHHHHHHHHhcCCCceEEEEecCCCC-CC-HHHHHHHHhc
Q 007940 17 GLRVLVV----DDDLAWLKILEKMLKKCSYEVTTCG---LARDALSLLRERKDGYDIVISDVNMPD-MD-GFKLLEHVGL 87 (584)
Q Consensus 17 gmrVLIV----DDd~~~r~~L~~lL~~~gy~V~~a~---~~~eAL~~L~~~~~~pDLVIlDi~MPd-md-GlELL~~Ir~ 87 (584)
..||+|. |-|..=...+..+|+..||+|+--+ ..++.++.+.+.. +|+|.+...|.. +. .-++++.|+.
T Consensus 596 r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA~e~~--adiVglSsl~~~~~~~~~~vi~~L~~ 673 (727)
T 1req_A 596 RPRILLAKMGQDGHDRGQKVIATAYADLGFDVDVGPLFQTPEETARQAVEAD--VHVVGVSSLAGGHLTLVPALRKELDK 673 (727)
T ss_dssp CCEEEEECBTTCCCCHHHHHHHHHHHHHTCEEEECCTTBCHHHHHHHHHHTT--CSEEEEEECSSCHHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCcchhHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHcC--CCEEEEeeecHhHHHHHHHHHHHHHh
Confidence 4577776 4455556778889999999998543 4678888887754 899999887653 22 3455666654
Q ss_pred cC--CCCEEEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 007940 88 EM--DLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 136 (584)
Q Consensus 88 ~~--~iPVIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrr 136 (584)
.. ++ .|++-+..-......+.+.||+.|+.---...++...+...+++
T Consensus 674 ~G~~~i-~VivGG~~p~~d~~~l~~~GaD~~f~~gt~~~e~a~~l~~~l~~ 723 (727)
T 1req_A 674 LGRPDI-LITVGGVIPEQDFDELRKDGAVEIYTPGTVIPESAISLVKKLRA 723 (727)
T ss_dssp TTCTTS-EEEEEESCCGGGHHHHHHTTEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred cCCCCC-EEEEcCCCccccHHHHHhCCCCEEEcCCccHHHHHHHHHHHHHH
Confidence 32 33 44455432233344567899999998666777777666665543
No 130
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=74.31 E-value=26 Score=35.03 Aligned_cols=88 Identities=13% Similarity=0.033 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEecC---CCCCCHHHHHHHHhcc-C-CCCEEEEEcCCC
Q 007940 28 AWLKILEKMLKKCSYEVT-TCGLARDALSLLRERKDGYDIVISDVN---MPDMDGFKLLEHVGLE-M-DLPVIMMSVDGE 101 (584)
Q Consensus 28 ~~r~~L~~lL~~~gy~V~-~a~~~~eAL~~L~~~~~~pDLVIlDi~---MPdmdGlELL~~Ir~~-~-~iPVIvlSa~~d 101 (584)
.....+....+..|..+. .+.+.+++..++.. ++|+|-+.-. ... -+++.++++... + ++|||..++-..
T Consensus 149 ~~l~~l~~~a~~lGl~~lvev~t~ee~~~A~~~---Gad~IGv~~r~l~~~~-~dl~~~~~l~~~v~~~~pvVaegGI~t 224 (272)
T 3qja_A 149 SVLVSMLDRTESLGMTALVEVHTEQEADRALKA---GAKVIGVNARDLMTLD-VDRDCFARIAPGLPSSVIRIAESGVRG 224 (272)
T ss_dssp HHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH---TCSEEEEESBCTTTCC-BCTTHHHHHGGGSCTTSEEEEESCCCS
T ss_pred HHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHC---CCCEEEECCCcccccc-cCHHHHHHHHHhCcccCEEEEECCCCC
Confidence 334455556667787654 67788887666643 3788877632 111 135566666433 3 688988888788
Q ss_pred hHHHHhhhhcCCceEEeC
Q 007940 102 TSRVMKGVQHGACDYLLK 119 (584)
Q Consensus 102 ~~~~~~aL~~GAdDYL~K 119 (584)
.+.+.++.++||+.+++=
T Consensus 225 ~edv~~l~~~GadgvlVG 242 (272)
T 3qja_A 225 TADLLAYAGAGADAVLVG 242 (272)
T ss_dssp HHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHcCCCEEEEc
Confidence 899999999999999874
No 131
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=72.36 E-value=24 Score=34.65 Aligned_cols=69 Identities=13% Similarity=0.075 Sum_probs=51.0
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEecCCCC-------CCHHHHHHHHhcc--CCCCEEEEEcCCChHHHHhhhhcCCceE
Q 007940 46 TCGLARDALSLLRERKDGYDIVISDVNMPD-------MDGFKLLEHVGLE--MDLPVIMMSVDGETSRVMKGVQHGACDY 116 (584)
Q Consensus 46 ~a~~~~eAL~~L~~~~~~pDLVIlDi~MPd-------mdGlELL~~Ir~~--~~iPVIvlSa~~d~~~~~~aL~~GAdDY 116 (584)
.+.+.+|+..+.+. .+|.|.+.-..|. .-|++.++++... ..+|||.+.+- +.+.+.+++++||+.+
T Consensus 141 S~ht~~Ea~~A~~~---GaDyI~vgpvf~T~tK~~~~~~gl~~l~~~~~~~~~~iPvvAiGGI-~~~ni~~~~~aGa~gv 216 (243)
T 3o63_A 141 STHDPDQVAAAAAG---DADYFCVGPCWPTPTKPGRAAPGLGLVRVAAELGGDDKPWFAIGGI-NAQRLPAVLDAGARRI 216 (243)
T ss_dssp EECSHHHHHHHHHS---SCSEEEECCSSCCCC-----CCCHHHHHHHHTC---CCCEEEESSC-CTTTHHHHHHTTCCCE
T ss_pred eCCCHHHHHHHhhC---CCCEEEEcCccCCCCCCCcchhhHHHHHHHHHhccCCCCEEEecCC-CHHHHHHHHHcCCCEE
Confidence 67888888776653 4899998653332 2378888888654 48999998766 5677889999999988
Q ss_pred Ee
Q 007940 117 LL 118 (584)
Q Consensus 117 L~ 118 (584)
.+
T Consensus 217 av 218 (243)
T 3o63_A 217 VV 218 (243)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 132
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=72.35 E-value=17 Score=34.29 Aligned_cols=98 Identities=14% Similarity=0.068 Sum_probs=65.2
Q ss_pred CCEEEEE----eCCHHHHHHHHHHHHhCCCeEEEEC---CHHHHHHHHHhcCCCceEEEEecCCCC-CCH-HHHHHHHhc
Q 007940 17 GLRVLVV----DDDLAWLKILEKMLKKCSYEVTTCG---LARDALSLLRERKDGYDIVISDVNMPD-MDG-FKLLEHVGL 87 (584)
Q Consensus 17 gmrVLIV----DDd~~~r~~L~~lL~~~gy~V~~a~---~~~eAL~~L~~~~~~pDLVIlDi~MPd-mdG-lELL~~Ir~ 87 (584)
+-+||+. |-|..=...+..+|+..||+|...+ ..++.++.+++.+ ||+|.+-..|.. +.. -++++.++.
T Consensus 88 ~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~~~~~~~--~d~v~lS~~~~~~~~~~~~~i~~l~~ 165 (210)
T 1y80_A 88 VGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEAVKKYQ--PDIVGMSALLTTTMMNMKSTIDALIA 165 (210)
T ss_dssp CCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHHHHHHC--CSEEEEECCSGGGTHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEeccccccHHHHHHHHHHHHh
Confidence 4588888 7778888999999999999998544 3566667776654 999999887653 332 345566654
Q ss_pred c---CCCCEEEEEcCCChHHHHhhhhcCCceEEeC
Q 007940 88 E---MDLPVIMMSVDGETSRVMKGVQHGACDYLLK 119 (584)
Q Consensus 88 ~---~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~K 119 (584)
. +++||++--.....+. +-..||+.|..-
T Consensus 166 ~~~~~~~~v~vGG~~~~~~~---~~~~gad~~~~d 197 (210)
T 1y80_A 166 AGLRDRVKVIVGGAPLSQDF---ADEIGADGYAPD 197 (210)
T ss_dssp TTCGGGCEEEEESTTCCHHH---HHHHTCSEECSS
T ss_pred cCCCCCCeEEEECCCCCHHH---HHHcCCeEEECC
Confidence 3 2466665433333332 245688876543
No 133
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=71.64 E-value=17 Score=37.80 Aligned_cols=99 Identities=17% Similarity=0.283 Sum_probs=62.9
Q ss_pred CCEEEEEe----CCHHHHHHHHHHHHhCCCeEE--EECCHHHHHHHHHhcCCCceEEEEecCC-----------CCCCHH
Q 007940 17 GLRVLVVD----DDLAWLKILEKMLKKCSYEVT--TCGLARDALSLLRERKDGYDIVISDVNM-----------PDMDGF 79 (584)
Q Consensus 17 gmrVLIVD----Dd~~~r~~L~~lL~~~gy~V~--~a~~~~eAL~~L~~~~~~pDLVIlDi~M-----------PdmdGl 79 (584)
+..+++|+ +.....+.++.+-+..+..|. .+.+.++|..++.. ..|.|.+-+.- .+...+
T Consensus 117 Gad~I~ld~a~G~~~~~~~~i~~i~~~~~~~Vivg~v~t~e~A~~l~~a---GaD~I~VG~~~Gs~~~tr~~~g~g~p~~ 193 (361)
T 3khj_A 117 GVDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGNVVTEEATKELIEN---GADGIKVGIGPGSICTTRIVAGVGVPQI 193 (361)
T ss_dssp TCSEEEECCSCCSBHHHHHHHHHHHHHCCCEEEEEEECSHHHHHHHHHT---TCSEEEECSSCCTTCCHHHHTCBCCCHH
T ss_pred CcCeEEEeCCCCCcHHHHHHHHHHHHhcCCcEEEccCCCHHHHHHHHHc---CcCEEEEecCCCcCCCcccccCCCCCcH
Confidence 44566664 344555666666666565554 56778877776653 37888873210 012345
Q ss_pred HHHHHHh---ccCCCCEEEEEcCCChHHHHhhhhcCCceEEe
Q 007940 80 KLLEHVG---LEMDLPVIMMSVDGETSRVMKGVQHGACDYLL 118 (584)
Q Consensus 80 ELL~~Ir---~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~ 118 (584)
+++..+. ....+|||.--.-.+...+.+++.+||+...+
T Consensus 194 ~~i~~v~~~~~~~~iPVIA~GGI~~~~di~kala~GAd~V~v 235 (361)
T 3khj_A 194 TAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMI 235 (361)
T ss_dssp HHHHHHHHHHHHHTCCEEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHhhcCCeEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 5555552 22478999776667788899999999998754
No 134
>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A*
Probab=70.31 E-value=18 Score=34.18 Aligned_cols=74 Identities=19% Similarity=0.221 Sum_probs=51.2
Q ss_pred CCeEE-EECCHHHHHHHHHhcCCCceEEEEecCCCC-------CCHHHHHHHHhccCCCCEEEEEcCCChHHHHhhhhcC
Q 007940 41 SYEVT-TCGLARDALSLLRERKDGYDIVISDVNMPD-------MDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHG 112 (584)
Q Consensus 41 gy~V~-~a~~~~eAL~~L~~~~~~pDLVIlDi~MPd-------mdGlELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~G 112 (584)
+..+. .+.+..++..+... ..|.|+++-..+. .-|++.++.++...++||++..+- +.+.+.+++++|
T Consensus 110 ~~~ig~sv~t~~~~~~a~~~---gaD~i~~~~~f~~~~~~g~~~~~~~~l~~~~~~~~~pvia~GGI-~~~nv~~~~~~G 185 (221)
T 1yad_A 110 HLHIGRSVHSLEEAVQAEKE---DADYVLFGHVFETDCKKGLEGRGVSLLSDIKQRISIPVIAIGGM-TPDRLRDVKQAG 185 (221)
T ss_dssp TCEEEEEECSHHHHHHHHHT---TCSEEEEECCC----------CHHHHHHHHHHHCCSCEEEESSC-CGGGHHHHHHTT
T ss_pred CCEEEEEcCCHHHHHHHHhC---CCCEEEECCccccCCCCCCCCCCHHHHHHHHHhCCCCEEEECCC-CHHHHHHHHHcC
Confidence 44433 56777887666543 3799998764332 236788888765558898877665 778889999999
Q ss_pred CceEEe
Q 007940 113 ACDYLL 118 (584)
Q Consensus 113 AdDYL~ 118 (584)
|+.+.+
T Consensus 186 a~gv~v 191 (221)
T 1yad_A 186 ADGIAV 191 (221)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 998764
No 135
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=69.88 E-value=8.6 Score=37.10 Aligned_cols=99 Identities=14% Similarity=0.131 Sum_probs=65.2
Q ss_pred CCCEEEEE----eCCHHHHHHHHHHHHhCCCeEEEEC---CHHHHHHHHHhcCCCceEEEE--ecCCC-CCCH-HHHHHH
Q 007940 16 AGLRVLVV----DDDLAWLKILEKMLKKCSYEVTTCG---LARDALSLLRERKDGYDIVIS--DVNMP-DMDG-FKLLEH 84 (584)
Q Consensus 16 ~gmrVLIV----DDd~~~r~~L~~lL~~~gy~V~~a~---~~~eAL~~L~~~~~~pDLVIl--Di~MP-dmdG-lELL~~ 84 (584)
.+-||++. |-|..=...+..+|+..||+|+-.+ ..++.++.+.+.+ ||+|.+ -..|. .+.. -++++.
T Consensus 91 ~~~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~--~d~v~l~~S~l~~~~~~~~~~~i~~ 168 (215)
T 3ezx_A 91 EAGLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHK--GEKVLLVGSALMTTSMLGQKDLMDR 168 (215)
T ss_dssp -CCEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTT--TSCEEEEEECSSHHHHTHHHHHHHH
T ss_pred CCCeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcC--CCEEEEEchhcccCcHHHHHHHHHH
Confidence 35688887 6677788889999999999998543 3567778887755 999999 77664 2332 345566
Q ss_pred Hhcc-C--CCCEEEEEcCCChHHHHhhhhcCCceEEeC
Q 007940 85 VGLE-M--DLPVIMMSVDGETSRVMKGVQHGACDYLLK 119 (584)
Q Consensus 85 Ir~~-~--~iPVIvlSa~~d~~~~~~aL~~GAdDYL~K 119 (584)
++.. . ++||++=-+.-..+. +-+.||+.|-.-
T Consensus 169 l~~~~~~~~v~v~vGG~~~~~~~---a~~iGad~~~~d 203 (215)
T 3ezx_A 169 LNEEKLRDSVKCMFGGAPVSDKW---IEEIGADATAEN 203 (215)
T ss_dssp HHHTTCGGGSEEEEESSSCCHHH---HHHHTCCBCCSS
T ss_pred HHHcCCCCCCEEEEECCCCCHHH---HHHhCCeEEECC
Confidence 6544 2 566654433334332 335699888644
No 136
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=69.85 E-value=25 Score=40.39 Aligned_cols=118 Identities=12% Similarity=0.017 Sum_probs=77.0
Q ss_pred CCEEEEE----eCCHHHHHHHHHHHHhCCCeEEEEC---CHHHHHHHHHhcCCCceEEEEecCCCC-CC-HHHHHHHHhc
Q 007940 17 GLRVLVV----DDDLAWLKILEKMLKKCSYEVTTCG---LARDALSLLRERKDGYDIVISDVNMPD-MD-GFKLLEHVGL 87 (584)
Q Consensus 17 gmrVLIV----DDd~~~r~~L~~lL~~~gy~V~~a~---~~~eAL~~L~~~~~~pDLVIlDi~MPd-md-GlELL~~Ir~ 87 (584)
..||+|. |-|..=...+..+|+..||+|+--+ ..++.++.+.+.. +|+|.+...|.. +. .-++++.|+.
T Consensus 604 r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA~e~~--adiVglSsl~~~~~~~~~~vi~~Lr~ 681 (762)
T 2xij_A 604 RPRLLVAKMGQDGHDRGAKVIATGFADLGFDVDIGPLFQTPREVAQQAVDAD--VHAVGVSTLAAGHKTLVPELIKELNS 681 (762)
T ss_dssp CCEEEEECCSSCCCCHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTT--CSEEEEEECSSCHHHHHHHHHHHHHH
T ss_pred CCEEEEEecCcchhhHHHHHHHHHHHhCCeEEeeCCCCCCHHHHHHHHHHcC--CCEEEEeeecHHHHHHHHHHHHHHHh
Confidence 3577765 3455556778889999999998533 4678888877754 899999887653 22 3445566654
Q ss_pred cC--CCCEEEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHhc
Q 007940 88 EM--DLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 137 (584)
Q Consensus 88 ~~--~iPVIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrrk 137 (584)
.. ++ .|++-+..-......+.+.||+.|+..--+..+....+...+..+
T Consensus 682 ~G~~dv-~VivGG~~P~~d~~~l~~~GaD~~f~pgtd~~e~~~~i~~~l~~~ 732 (762)
T 2xij_A 682 LGRPDI-LVMCGGVIPPQDYEFLFEVGVSNVFGPGTRIPKAAVQVLDDIEKC 732 (762)
T ss_dssp TTCTTS-EEEEEESCCGGGHHHHHHHTCCEEECTTCCHHHHHHHHHHHHHHH
T ss_pred cCCCCC-EEEEeCCCCcccHHHHHhCCCCEEeCCCCCHHHHHHHHHHHHHHH
Confidence 32 33 344444222223445678999999986667777777777766544
No 137
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=69.69 E-value=8.3 Score=37.22 Aligned_cols=50 Identities=10% Similarity=0.204 Sum_probs=36.2
Q ss_pred HHHHHHHHhccCCCCEEEEEcCCC------hHHHHhhhhcCCceEEeCCCCHHHHH
Q 007940 78 GFKLLEHVGLEMDLPVIMMSVDGE------TSRVMKGVQHGACDYLLKPIRMKELR 127 (584)
Q Consensus 78 GlELL~~Ir~~~~iPVIvlSa~~d------~~~~~~aL~~GAdDYL~KP~~~~eL~ 127 (584)
++++++.++...++||++++.... .+.+..++++||+..+.-....++..
T Consensus 68 ~~~~i~~i~~~~~~pv~~~~~~~~~~~~~~~~~~~~~~~~Gad~v~~~~~~~~~~~ 123 (248)
T 1geq_A 68 AFWIVKEFRRHSSTPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLPVFHAK 123 (248)
T ss_dssp HHHHHHHHHTTCCCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTCCGGGHH
T ss_pred HHHHHHHHHhhCCCCEEEEeccchhhhcCHHHHHHHHHHCCCCEEEECCCChhhHH
Confidence 377888887666789998873222 46788889999999988655554443
No 138
>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1
Probab=68.39 E-value=32 Score=31.86 Aligned_cols=69 Identities=14% Similarity=0.197 Sum_probs=48.7
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEecCCCC-------CCHHHHHHHHhccCCCCEEEEEcCCChHHHHhhhhcCCceEEe
Q 007940 46 TCGLARDALSLLRERKDGYDIVISDVNMPD-------MDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLL 118 (584)
Q Consensus 46 ~a~~~~eAL~~L~~~~~~pDLVIlDi~MPd-------mdGlELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~ 118 (584)
.+.+..++...... .+|.|+++-..|. ..+++.++.++...++||++..+-. .+.+.++++.||+.+.+
T Consensus 114 ~~~t~~e~~~~~~~---g~d~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~pvia~GGI~-~~nv~~~~~~Ga~gv~v 189 (215)
T 1xi3_A 114 SVYSLEEALEAEKK---GADYLGAGSVFPTKTKEDARVIGLEGLRKIVESVKIPVVAIGGIN-KDNAREVLKTGVDGIAV 189 (215)
T ss_dssp EESSHHHHHHHHHH---TCSEEEEECSSCC----CCCCCHHHHHHHHHHHCSSCEEEESSCC-TTTHHHHHTTTCSEEEE
T ss_pred ecCCHHHHHHHHhc---CCCEEEEcCCccCCCCCCCCCcCHHHHHHHHHhCCCCEEEECCcC-HHHHHHHHHcCCCEEEE
Confidence 46777777654432 3899998754443 3478888888655688988765555 67778888999998853
No 139
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=68.29 E-value=31 Score=34.47 Aligned_cols=114 Identities=11% Similarity=0.092 Sum_probs=72.4
Q ss_pred CCEEEEE----eCCHHHHHHHHHH--------HHhC-CCeEEEEC---CHHHHHHHHHhcCCCceEEEEecCCCC----C
Q 007940 17 GLRVLVV----DDDLAWLKILEKM--------LKKC-SYEVTTCG---LARDALSLLRERKDGYDIVISDVNMPD----M 76 (584)
Q Consensus 17 gmrVLIV----DDd~~~r~~L~~l--------L~~~-gy~V~~a~---~~~eAL~~L~~~~~~pDLVIlDi~MPd----m 76 (584)
+.+|++. |-|..=...+..+ |+.. ||+|+-.+ ..++.++.+.+.+ +|+|.+-..|.. +
T Consensus 120 ~~~Vvlatv~gD~HdiG~~iv~~~k~~~~~~~L~~~~G~eVi~LG~~vp~e~iv~aa~e~~--~d~VglS~l~t~~~~~~ 197 (262)
T 1xrs_B 120 KIVVVGASTGTDAHTVGIDAIMNMKGYAGHYGLERYEMIDAYNLGSQVANEDFIKKAVELE--ADVLLVSQTVTQKNVHI 197 (262)
T ss_dssp CEEEEEEEBTTCCCCHHHHHHHSTTCBTTBCCGGGCTTEEEEECCSSBCHHHHHHHHHHTT--CSEEEEECCCCTTSHHH
T ss_pred CCEEEEEeCCCCCchHHHHHHhhhhcccchHHHHhcCCcEEEECCCCCCHHHHHHHHHHcC--CCEEEEEeecCCccchH
Confidence 4567665 5566666777777 9999 99997433 4677777777754 999999998875 2
Q ss_pred CHH-HHHHHHhccC---CCCEEEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHH
Q 007940 77 DGF-KLLEHVGLEM---DLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFR 135 (584)
Q Consensus 77 dGl-ELL~~Ir~~~---~iPVIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlr 135 (584)
..+ ++++.+++.. +++|+ +-+..-.. .-+.+.||+.|..--....++...+...+.
T Consensus 198 ~~~~~~i~~L~~~g~~~~i~vi-vGG~~~~~--~~a~~iGad~~~~da~~~~~~a~~l~~~~~ 257 (262)
T 1xrs_B 198 QNMTHLIELLEAEGLRDRFVLL-CGGPRINN--EIAKELGYDAGFGPGRFADDVATFAVKTLN 257 (262)
T ss_dssp HHHHHHHHHHHHTTCGGGSEEE-EECTTCCH--HHHHTTTCSEEECTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCCEEE-EECCcCCH--HHHHHcCCeEEECCchHHHHHHHHHHHHHH
Confidence 222 3455554332 25554 44433222 235678999888777777776666555443
No 140
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=66.79 E-value=35 Score=37.17 Aligned_cols=101 Identities=15% Similarity=0.216 Sum_probs=64.5
Q ss_pred CCCEEEEEe----CCHHHHHHHHHHHHhCC-CeEE--EECCHHHHHHHHHhcCCCceEEEEecCCC-----------CCC
Q 007940 16 AGLRVLVVD----DDLAWLKILEKMLKKCS-YEVT--TCGLARDALSLLRERKDGYDIVISDVNMP-----------DMD 77 (584)
Q Consensus 16 ~gmrVLIVD----Dd~~~r~~L~~lL~~~g-y~V~--~a~~~~eAL~~L~~~~~~pDLVIlDi~MP-----------dmd 77 (584)
+|..+++|+ +.....+.++.+-+..+ ..++ .+.+.++|..+... +.|.|.+.+.-- +..
T Consensus 267 aGvd~I~Id~a~g~~~~v~~~i~~i~~~~~~~~vi~g~v~t~e~a~~~~~a---Gad~i~vg~g~gsi~~~~~~~g~g~p 343 (511)
T 3usb_A 267 ASVDAIVLDTAHGHSQGVIDKVKEVRAKYPSLNIIAGNVATAEATKALIEA---GANVVKVGIGPGSICTTRVVAGVGVP 343 (511)
T ss_dssp TTCSEEEEECSCTTSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHH---TCSEEEECSSCSTTCCHHHHHCCCCC
T ss_pred hccceEEecccccchhhhhhHHHHHHHhCCCceEEeeeeccHHHHHHHHHh---CCCEEEECCCCccccccccccCCCCC
Confidence 356677777 34455566666666654 2333 56677777776654 378888743211 123
Q ss_pred HHHHHHHH---hccCCCCEEEEEcCCChHHHHhhhhcCCceEEeC
Q 007940 78 GFKLLEHV---GLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLK 119 (584)
Q Consensus 78 GlELL~~I---r~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~K 119 (584)
.++++..+ .....+|||.--+-.....+.+|+.+||+..++=
T Consensus 344 ~~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kala~GA~~V~vG 388 (511)
T 3usb_A 344 QLTAVYDCATEARKHGIPVIADGGIKYSGDMVKALAAGAHVVMLG 388 (511)
T ss_dssp HHHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred cHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHhCchhheec
Confidence 35555444 2234699998777788899999999999987653
No 141
>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A* 3kox_A*
Probab=65.00 E-value=21 Score=40.27 Aligned_cols=115 Identities=14% Similarity=0.107 Sum_probs=73.2
Q ss_pred CCEEEEE----eCCHHHHHH----HHHHHHhCCCeEEEEC---CHHHHHHHHHhcCCCceEEEEecCCCC----CCHH-H
Q 007940 17 GLRVLVV----DDDLAWLKI----LEKMLKKCSYEVTTCG---LARDALSLLRERKDGYDIVISDVNMPD----MDGF-K 80 (584)
Q Consensus 17 gmrVLIV----DDd~~~r~~----L~~lL~~~gy~V~~a~---~~~eAL~~L~~~~~~pDLVIlDi~MPd----mdGl-E 80 (584)
..||++. |-|..=.+. +..+|+..||+|+-.+ ..++.++.+.+.. +|+|.+-..|.. +..+ +
T Consensus 602 kGKVVIATVgGD~HDIGKklVaNIVa~~LE~aGFEVIDLGvdVPpEeIVeAA~Eed--ADVVGLSsLLTt~dihL~~Mke 679 (763)
T 3kp1_A 602 PLKIVAATVGEDEHSVGLREVIDIKHGGIEKYGVEVHYLGTSVPVEKLVDAAIELK--ADAILASTIISHDDIHYKNMKR 679 (763)
T ss_dssp CCEEEEEEBTTCCCCHHHHHTTSTTTTCGGGGTCEEEECCSSBCHHHHHHHHHHTT--CSEEEEECCCCGGGHHHHHHHH
T ss_pred CCEEEEEeCCCChhhhhhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEeccccCchhhHHHHHH
Confidence 5688887 333333322 3578999999998443 5688888888755 999999988875 3433 3
Q ss_pred HHHHHhccC---CCCEEEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 007940 81 LLEHVGLEM---DLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 136 (584)
Q Consensus 81 LL~~Ir~~~---~iPVIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrr 136 (584)
+++.+++.. .++|+ +-+..-.... +-..||+.|..-.....++...|...++.
T Consensus 680 vIelLrE~GlrDkIkVI-VGGa~~tqd~--AkeIGADa~f~DATeAVeVA~~Ll~~l~e 735 (763)
T 3kp1_A 680 IHELAVEKGIRDKIMIG-CGGTQVTPEV--AVKQGVDAGFGRGSKGIHVATFLVKKRRE 735 (763)
T ss_dssp HHHHHHHTTCTTTSEEE-EECTTCCHHH--HHTTTCSEEECTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCEEE-EECCCCCHHH--HHHcCCcEEECCcchHHHHHHHHHHHHHH
Confidence 445555432 24444 4443222322 34789999988777777777666655544
No 142
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=64.67 E-value=72 Score=29.98 Aligned_cols=55 Identities=15% Similarity=0.205 Sum_probs=42.4
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEE
Q 007940 15 PAGLRVLVVDDDLAWLKILEKMLKKCSYEVT-TCGLARDALSLLRERKDGYDIVIS 69 (584)
Q Consensus 15 p~gmrVLIVDDd~~~r~~L~~lL~~~gy~V~-~a~~~~eAL~~L~~~~~~pDLVIl 69 (584)
+.+.+|+++-..+.+++.+++++...+.++. ...+.++|+...++...++|+||.
T Consensus 2 ~~~~~I~~iapy~~l~~~~~~i~~e~~~~i~i~~~~l~~~v~~a~~~~~~~dVIIS 57 (196)
T 2q5c_A 2 SLSLKIALISQNENLLNLFPKLALEKNFIPITKTASLTRASKIAFGLQDEVDAIIS 57 (196)
T ss_dssp CCCCEEEEEESCHHHHHHHHHHHHHHTCEEEEEECCHHHHHHHHHHHTTTCSEEEE
T ss_pred CCCCcEEEEEccHHHHHHHHHHHhhhCCceEEEECCHHHHHHHHHHhcCCCeEEEE
Confidence 4567999999999999999999987666554 456778888876663245898885
No 143
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=64.65 E-value=69 Score=33.42 Aligned_cols=97 Identities=14% Similarity=0.097 Sum_probs=60.4
Q ss_pred CCEEEEEeC----CHHHHHHHHHHHHhC-CCeEE--EECCHHHHHHHHHhcCCCceEEEEecCCCC------------CC
Q 007940 17 GLRVLVVDD----DLAWLKILEKMLKKC-SYEVT--TCGLARDALSLLRERKDGYDIVISDVNMPD------------MD 77 (584)
Q Consensus 17 gmrVLIVDD----d~~~r~~L~~lL~~~-gy~V~--~a~~~~eAL~~L~~~~~~pDLVIlDi~MPd------------md 77 (584)
|..++.||- .....+.++.+-+.. +..|. .+.+.++|..+... +.|.|.+.+. |+ ..
T Consensus 112 GvdvI~id~a~G~~~~~~e~I~~ir~~~~~~~Vi~G~V~T~e~A~~a~~a---GaD~I~Vg~g-~G~~~~tr~~~g~g~p 187 (361)
T 3r2g_A 112 GADFFCVDVAHAHAKYVGKTLKSLRQLLGSRCIMAGNVATYAGADYLASC---GADIIKAGIG-GGSVCSTRIKTGFGVP 187 (361)
T ss_dssp TCCEEEEECSCCSSHHHHHHHHHHHHHHTTCEEEEEEECSHHHHHHHHHT---TCSEEEECCS-SSSCHHHHHHHCCCCC
T ss_pred CCCEEEEeCCCCCcHhHHHHHHHHHHhcCCCeEEEcCcCCHHHHHHHHHc---CCCEEEEcCC-CCcCccccccCCccHH
Confidence 566788862 233344444444433 44444 36788888777653 3799988543 32 22
Q ss_pred HHHHHHHHhccCCCCEEEEEcCCChHHHHhhhhcCCceEEe
Q 007940 78 GFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLL 118 (584)
Q Consensus 78 GlELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~ 118 (584)
.++.+..+..... |||.-..-.+...+.+++.+||+...+
T Consensus 188 ~l~aI~~~~~~~~-PVIAdGGI~~~~di~kALa~GAd~V~i 227 (361)
T 3r2g_A 188 MLTCIQDCSRADR-SIVADGGIKTSGDIVKALAFGADFVMI 227 (361)
T ss_dssp HHHHHHHHTTSSS-EEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHhCC-CEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 3455555432222 888777777889999999999987655
No 144
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=64.29 E-value=47 Score=29.64 Aligned_cols=106 Identities=15% Similarity=0.090 Sum_probs=69.9
Q ss_pred CCEEEEEeCCH-HHHHHHHHHHHhCCCeEEE-EC--CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCC
Q 007940 17 GLRVLVVDDDL-AWLKILEKMLKKCSYEVTT-CG--LARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLP 92 (584)
Q Consensus 17 gmrVLIVDDd~-~~r~~L~~lL~~~gy~V~~-a~--~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iP 92 (584)
+++++|+-+.+ .....++.+++..+ .|.. .+ +..+....+.. .|++|+-... +.-|..+++.+. ..+|
T Consensus 70 ~~~l~i~G~~~~~~~~~l~~~~~~~~-~v~~~~g~~~~~~~~~~~~~----ad~~l~ps~~-e~~~~~~~Ea~a--~G~P 141 (200)
T 2bfw_A 70 EMRFIIIGKGDPELEGWARSLEEKHG-NVKVITEMLSREFVRELYGS----VDFVIIPSYF-EPFGLVALEAMC--LGAI 141 (200)
T ss_dssp GEEEEEECCBCHHHHHHHHHHHHHCT-TEEEECSCCCHHHHHHHHTT----CSEEEECCSC-CSSCHHHHHHHH--TTCE
T ss_pred CeEEEEECCCChHHHHHHHHHHHhcC-CEEEEeccCCHHHHHHHHHH----CCEEEECCCC-CCccHHHHHHHH--CCCC
Confidence 46788887643 35667788888776 4544 33 33455555543 5788874433 333666777663 4678
Q ss_pred EEEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHH
Q 007940 93 VIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFR 135 (584)
Q Consensus 93 VIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlr 135 (584)
||+. .. ....+.+ .|..+++..|-+.++|.+++.+++.
T Consensus 142 vI~~-~~---~~~~e~~-~~~~g~~~~~~~~~~l~~~i~~l~~ 179 (200)
T 2bfw_A 142 PIAS-AV---GGLRDII-TNETGILVKAGDPGELANAILKALE 179 (200)
T ss_dssp EEEE-SC---HHHHHHC-CTTTCEEECTTCHHHHHHHHHHHHH
T ss_pred EEEe-CC---CChHHHc-CCCceEEecCCCHHHHHHHHHHHHh
Confidence 7643 32 2344555 6778899999999999999998876
No 145
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}
Probab=62.54 E-value=18 Score=35.75 Aligned_cols=71 Identities=18% Similarity=0.272 Sum_probs=47.8
Q ss_pred CceEEEEecCC--CCCC--------------------HHHHHHHHhccC-CCCEEEEEcCC------ChHHHHhhhhcCC
Q 007940 63 GYDIVISDVNM--PDMD--------------------GFKLLEHVGLEM-DLPVIMMSVDG------ETSRVMKGVQHGA 113 (584)
Q Consensus 63 ~pDLVIlDi~M--Pdmd--------------------GlELL~~Ir~~~-~iPVIvlSa~~------d~~~~~~aL~~GA 113 (584)
+.|+|.+++-. |.+| .+++++.++... ++|+++|+-.. -...+..+.++|+
T Consensus 44 G~D~IElG~P~sdP~adgp~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pi~~m~y~n~v~~~g~~~f~~~~~~aG~ 123 (262)
T 2ekc_A 44 GTDILEIGFPFSDPVADGPTIQVAHEVALKNGIRFEDVLELSETLRKEFPDIPFLLMTYYNPIFRIGLEKFCRLSREKGI 123 (262)
T ss_dssp TCSEEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSCEEEECCHHHHHHHCHHHHHHHHHHTTC
T ss_pred CCCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCCEEEEecCcHHHHhhHHHHHHHHHHcCC
Confidence 48998887743 2233 345677777665 89999985332 1345667889999
Q ss_pred ceEEeCCCCHHHHHHHHHHH
Q 007940 114 CDYLLKPIRMKELRNIWQHV 133 (584)
Q Consensus 114 dDYL~KP~~~~eL~~aI~~v 133 (584)
+++++-.+..+++...+..+
T Consensus 124 dgvii~dl~~ee~~~~~~~~ 143 (262)
T 2ekc_A 124 DGFIVPDLPPEEAEELKAVM 143 (262)
T ss_dssp CEEECTTCCHHHHHHHHHHH
T ss_pred CEEEECCCCHHHHHHHHHHH
Confidence 99999877777765554443
No 146
>1r8j_A KAIA; circadian clock protein; 2.03A {Synechococcus elongatus pcc 7942} SCOP: a.186.1.1 c.23.1.5 PDB: 1m2e_A 1m2f_A
Probab=62.01 E-value=51 Score=33.26 Aligned_cols=120 Identities=12% Similarity=0.132 Sum_probs=80.0
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc-CCCCE
Q 007940 15 PAGLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLE-MDLPV 93 (584)
Q Consensus 15 p~gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~-~~iPV 93 (584)
...+.|-+.-.++.....+..+|....|.+..+....+.++.++..++.+|++|+-.. +..-..+...+... .-+|+
T Consensus 7 ~~~LsI~~~~~s~~l~~~~~~~L~~dRY~l~~~~s~~~f~~~le~~~e~iDcLvle~~--~~~~~~~~~~L~~~g~lLP~ 84 (289)
T 1r8j_A 7 LSQIAICIWVESTAILQDCQRALSADRYQLQVCESGEMLLEYAQTHRDQIDCLILVAA--NPSFRAVVQQLCFEGVVVPA 84 (289)
T ss_dssp CCCEEEEEECCCHHHHHHHHHHTCSTTEEEEEECSHHHHHHHHHHSTTSCSEEEEETT--STTHHHHHHHHHHTTCCCCE
T ss_pred ccceeEEEEeCCHHHHHHHHHhcccCceEEEEcCcHHHHHHHHHhccccCCEEEEEeC--CCccHHHHHHHHHcCccccE
Confidence 4578899999999999999999998889999999999999999888788999998762 22345566666543 46799
Q ss_pred EEEEcCCChHHHHh---hhhcCCceEEeCCCCHHHHHHHHHHHHHhc
Q 007940 94 IMMSVDGETSRVMK---GVQHGACDYLLKPIRMKELRNIWQHVFRKK 137 (584)
Q Consensus 94 IvlSa~~d~~~~~~---aL~~GAdDYL~KP~~~~eL~~aI~~vlrrk 137 (584)
|++..... ..-.+ .+-....+.-...-..+.+-..|.+++.+.
T Consensus 85 vil~~~~~-~~~~~~~~~~~yh~aEv~l~~~ql~~l~~~Id~AI~~F 130 (289)
T 1r8j_A 85 IVVGDRDS-EDPDEPAKEQLYHSAELHLGIHQLEQLPYQVDAALAEF 130 (289)
T ss_dssp EEESCCC-------CCSSCSSBTTCEEECTTCGGGHHHHHHHHHHHH
T ss_pred EEeccCcc-ccCCCCccceeccHHHHcCCHhHHHHHHHHHHHHHHHH
Confidence 98855311 00000 011112222333444566666666666554
No 147
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=61.23 E-value=16 Score=36.15 Aligned_cols=71 Identities=21% Similarity=0.283 Sum_probs=49.3
Q ss_pred CceEEEEecCC--CCCCH--------------------HHHHHHHhcc-CCCCEEEEEcC------CChHHHHhhhhcCC
Q 007940 63 GYDIVISDVNM--PDMDG--------------------FKLLEHVGLE-MDLPVIMMSVD------GETSRVMKGVQHGA 113 (584)
Q Consensus 63 ~pDLVIlDi~M--PdmdG--------------------lELL~~Ir~~-~~iPVIvlSa~------~d~~~~~~aL~~GA 113 (584)
+.|+|-+++-. |-||| +++++.++.. .++||++|+-. +....+..+.++||
T Consensus 44 GaD~ieig~P~sdp~~DG~~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pv~lm~y~n~v~~~g~~~~~~~~~~aGa 123 (268)
T 1qop_A 44 GADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIREKHPTIPIGLLMYANLVFNNGIDAFYARCEQVGV 123 (268)
T ss_dssp TCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSSSCEEEEECHHHHHTTCHHHHHHHHHHHTC
T ss_pred CCCEEEECCCCCCccCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEcccHHHHhhHHHHHHHHHHcCC
Confidence 48999998833 33444 4567777766 68999988622 22466778889999
Q ss_pred ceEEeCCCCHHHHHHHHHHH
Q 007940 114 CDYLLKPIRMKELRNIWQHV 133 (584)
Q Consensus 114 dDYL~KP~~~~eL~~aI~~v 133 (584)
+.++.-....+++...++.+
T Consensus 124 dgii~~d~~~e~~~~~~~~~ 143 (268)
T 1qop_A 124 DSVLVADVPVEESAPFRQAA 143 (268)
T ss_dssp CEEEETTCCGGGCHHHHHHH
T ss_pred CEEEEcCCCHHHHHHHHHHH
Confidence 99999877776655554443
No 148
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=61.19 E-value=64 Score=32.50 Aligned_cols=81 Identities=21% Similarity=0.249 Sum_probs=56.3
Q ss_pred HHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEecCCC----C---CCHHHHHHHHhccCCCCEEEEEcCCChHHHH
Q 007940 35 KMLKKCSYEVT-TCGLARDALSLLRERKDGYDIVISDVNMP----D---MDGFKLLEHVGLEMDLPVIMMSVDGETSRVM 106 (584)
Q Consensus 35 ~lL~~~gy~V~-~a~~~~eAL~~L~~~~~~pDLVIlDi~MP----d---mdGlELL~~Ir~~~~iPVIvlSa~~d~~~~~ 106 (584)
+.+++.|..+. .+.+..++..+... ..|.|+++-.-+ + ...+++++.++...++|||+-.+-.+.+.+.
T Consensus 112 ~~l~~~gi~vi~~v~t~~~a~~~~~~---GaD~i~v~g~~~GG~~G~~~~~~~~~l~~v~~~~~iPviaaGGI~~~~~v~ 188 (328)
T 2gjl_A 112 AEFRRHGVKVIHKCTAVRHALKAERL---GVDAVSIDGFECAGHPGEDDIPGLVLLPAAANRLRVPIIASGGFADGRGLV 188 (328)
T ss_dssp HHHHHTTCEEEEEESSHHHHHHHHHT---TCSEEEEECTTCSBCCCSSCCCHHHHHHHHHTTCCSCEEEESSCCSHHHHH
T ss_pred HHHHHcCCCEEeeCCCHHHHHHHHHc---CCCEEEEECCCCCcCCCCccccHHHHHHHHHHhcCCCEEEECCCCCHHHHH
Confidence 34444565544 46777777765543 378888853222 1 2567888888766689999877777788889
Q ss_pred hhhhcCCceEEe
Q 007940 107 KGVQHGACDYLL 118 (584)
Q Consensus 107 ~aL~~GAdDYL~ 118 (584)
+++.+||+...+
T Consensus 189 ~al~~GAdgV~v 200 (328)
T 2gjl_A 189 AALALGADAINM 200 (328)
T ss_dssp HHHHHTCSEEEE
T ss_pred HHHHcCCCEEEE
Confidence 999999998764
No 149
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=60.53 E-value=50 Score=35.68 Aligned_cols=99 Identities=19% Similarity=0.241 Sum_probs=64.5
Q ss_pred CCEEEEEe----CCHHHHHHHHHHHHhC-CCeEE--EECCHHHHHHHHHhcCCCceEEEEecCCCC------------CC
Q 007940 17 GLRVLVVD----DDLAWLKILEKMLKKC-SYEVT--TCGLARDALSLLRERKDGYDIVISDVNMPD------------MD 77 (584)
Q Consensus 17 gmrVLIVD----Dd~~~r~~L~~lL~~~-gy~V~--~a~~~~eAL~~L~~~~~~pDLVIlDi~MPd------------md 77 (584)
|..++++| ......+.++.+-+.. +..|. .+.+.++|..+... +.|.|.+-+. |+ ..
T Consensus 241 G~d~I~id~a~g~~~~~~~~v~~i~~~~p~~~Vi~g~v~t~e~a~~l~~a---GaD~I~vg~g-~Gs~~~t~~~~g~g~p 316 (490)
T 4avf_A 241 GVDVVVVDTAHGHSKGVIERVRWVKQTFPDVQVIGGNIATAEAAKALAEA---GADAVKVGIG-PGSICTTRIVAGVGVP 316 (490)
T ss_dssp TCSEEEEECSCCSBHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHT---TCSEEEECSS-CSTTCHHHHHTCBCCC
T ss_pred ccceEEecccCCcchhHHHHHHHHHHHCCCceEEEeeeCcHHHHHHHHHc---CCCEEEECCC-CCcCCCccccCCCCcc
Confidence 45667776 4455666777776665 33333 35677777666553 3788887321 11 23
Q ss_pred HHHHHHHHhc---cCCCCEEEEEcCCChHHHHhhhhcCCceEEeC
Q 007940 78 GFKLLEHVGL---EMDLPVIMMSVDGETSRVMKGVQHGACDYLLK 119 (584)
Q Consensus 78 GlELL~~Ir~---~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~K 119 (584)
.++++..+.. ...+|||.-.+-.....+.+++.+||+...+=
T Consensus 317 ~~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kal~~GAd~V~vG 361 (490)
T 4avf_A 317 QISAIANVAAALEGTGVPLIADGGIRFSGDLAKAMVAGAYCVMMG 361 (490)
T ss_dssp HHHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHHHTCSEEEEC
T ss_pred HHHHHHHHHHHhccCCCcEEEeCCCCCHHHHHHHHHcCCCeeeec
Confidence 4555555532 34799998777778899999999999987653
No 150
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=59.51 E-value=14 Score=36.92 Aligned_cols=80 Identities=19% Similarity=0.279 Sum_probs=53.1
Q ss_pred HHHHHHHhcCCCceEEEEecC--CCCCCH--------------------HHHHHHHhcc-CCCCEEEEEcC------CCh
Q 007940 52 DALSLLRERKDGYDIVISDVN--MPDMDG--------------------FKLLEHVGLE-MDLPVIMMSVD------GET 102 (584)
Q Consensus 52 eAL~~L~~~~~~pDLVIlDi~--MPdmdG--------------------lELL~~Ir~~-~~iPVIvlSa~------~d~ 102 (584)
+.+..|.+ .+.|+|=+++- -|-+|| +++++.+|.. .++|+++|+-. +-.
T Consensus 36 ~~~~~l~~--~GaD~iElgiPfSDP~aDGp~Iq~a~~~AL~~G~~~~~~~~~v~~ir~~~~~~Pivlm~Y~npv~~~g~e 113 (267)
T 3vnd_A 36 KIIQTLVD--NGADALELGFPFSDPLADGPVIQGANLRSLAAGTTSSDCFDIITKVRAQHPDMPIGLLLYANLVFANGID 113 (267)
T ss_dssp HHHHHHHH--TTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCCEEEEECHHHHHHHCHH
T ss_pred HHHHHHHH--cCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHhhHH
Confidence 44444444 34888888753 244554 5666777765 78999998742 235
Q ss_pred HHHHhhhhcCCceEEeCCCCHHHHHHHHHHH
Q 007940 103 SRVMKGVQHGACDYLLKPIRMKELRNIWQHV 133 (584)
Q Consensus 103 ~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~v 133 (584)
..+.++.++|++..|+-....++....++.+
T Consensus 114 ~f~~~~~~aGvdgvii~Dlp~ee~~~~~~~~ 144 (267)
T 3vnd_A 114 EFYTKAQAAGVDSVLIADVPVEESAPFSKAA 144 (267)
T ss_dssp HHHHHHHHHTCCEEEETTSCGGGCHHHHHHH
T ss_pred HHHHHHHHcCCCEEEeCCCCHhhHHHHHHHH
Confidence 6678889999999999777777655544443
No 151
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=59.21 E-value=54 Score=35.35 Aligned_cols=92 Identities=15% Similarity=0.168 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHhC-CCeEE--EECCHHHHHHHHHhcCCCceEEEEecC--------------CCCCCHHHHHHHHhccC
Q 007940 27 LAWLKILEKMLKKC-SYEVT--TCGLARDALSLLRERKDGYDIVISDVN--------------MPDMDGFKLLEHVGLEM 89 (584)
Q Consensus 27 ~~~r~~L~~lL~~~-gy~V~--~a~~~~eAL~~L~~~~~~pDLVIlDi~--------------MPdmdGlELL~~Ir~~~ 89 (584)
....+.++.+-+.. +..|. .+.+.++|..+... +.|.|.+-.+ +|....+.+++.+....
T Consensus 281 ~~~~~~i~~i~~~~~~~pvi~~~v~t~~~a~~l~~a---Gad~I~vg~~~G~~~~t~~~~~~g~~~~~~~~~~~~~~~~~ 357 (514)
T 1jcn_A 281 VYQIAMVHYIKQKYPHLQVIGGNVVTAAQAKNLIDA---GVDGLRVGMGCGSICITQEVMACGRPQGTAVYKVAEYARRF 357 (514)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHHH---TCSEEEECSSCSCCBTTBCCCSCCCCHHHHHHHHHHHHGGG
T ss_pred hhHHHHHHHHHHhCCCCceEecccchHHHHHHHHHc---CCCEEEECCCCCcccccccccCCCccchhHHHHHHHHHhhC
Confidence 33455666666655 44444 35677777666543 2677777331 11222456677776556
Q ss_pred CCCEEEEEcCCChHHHHhhhhcCCceE-EeCCC
Q 007940 90 DLPVIMMSVDGETSRVMKGVQHGACDY-LLKPI 121 (584)
Q Consensus 90 ~iPVIvlSa~~d~~~~~~aL~~GAdDY-L~KP~ 121 (584)
.+|||....-.+...+.+++.+||+.. +-.++
T Consensus 358 ~ipVia~GGI~~~~di~kala~GAd~V~iG~~~ 390 (514)
T 1jcn_A 358 GVPIIADGGIQTVGHVVKALALGASTVMMGSLL 390 (514)
T ss_dssp TCCEEEESCCCSHHHHHHHHHTTCSEEEESTTT
T ss_pred CCCEEEECCCCCHHHHHHHHHcCCCeeeECHHH
Confidence 899998777778889999999999875 44554
No 152
>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*
Probab=58.52 E-value=61 Score=33.46 Aligned_cols=101 Identities=13% Similarity=0.118 Sum_probs=64.9
Q ss_pred CCEEEEEe----CCHHHHHHHHHHHHhC-CCeEE--EECCHHHHHHHHHhcCCCceEEEEecCCCC------------CC
Q 007940 17 GLRVLVVD----DDLAWLKILEKMLKKC-SYEVT--TCGLARDALSLLRERKDGYDIVISDVNMPD------------MD 77 (584)
Q Consensus 17 gmrVLIVD----Dd~~~r~~L~~lL~~~-gy~V~--~a~~~~eAL~~L~~~~~~pDLVIlDi~MPd------------md 77 (584)
+..++.++ +.....+.++.+-+.. +..|. .+.+.++|..+.+. +.|.|.+-.. ++ ..
T Consensus 132 g~~~i~i~~~~g~~~~~~~~i~~lr~~~~~~~vi~g~v~t~e~A~~a~~a---GaD~I~v~~g-~G~~~~~r~~~g~~~p 207 (351)
T 2c6q_A 132 QVKYICLDVANGYSEHFVEFVKDVRKRFPQHTIMAGNVVTGEMVEELILS---GADIIKVGIG-PGSVCTTRKKTGVGYP 207 (351)
T ss_dssp TCCEEEEECSCTTBHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHT---TCSEEEECSS-CSTTBCHHHHHCBCCC
T ss_pred CCCEEEEEecCCCcHHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHh---CCCEEEECCC-CCcCcCccccCCCCcc
Confidence 45666675 3445566676666655 44333 57788888777653 3788877432 21 22
Q ss_pred HHHHHHHHh---ccCCCCEEEEEcCCChHHHHhhhhcCCceE-EeCCC
Q 007940 78 GFKLLEHVG---LEMDLPVIMMSVDGETSRVMKGVQHGACDY-LLKPI 121 (584)
Q Consensus 78 GlELL~~Ir---~~~~iPVIvlSa~~d~~~~~~aL~~GAdDY-L~KP~ 121 (584)
-+.++..+. ....+|||.-..-.+...+.+|+.+||+.. +-++|
T Consensus 208 ~~~~l~~v~~~~~~~~ipvIa~GGI~~g~di~kAlalGA~~V~vG~~f 255 (351)
T 2c6q_A 208 QLSAVMECADAAHGLKGHIISDGGCSCPGDVAKAFGAGADFVMLGGML 255 (351)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEESCCCSHHHHHHHHHTTCSEEEESTTT
T ss_pred HHHHHHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcCCCceeccHHH
Confidence 344444442 224689988777788899999999999985 55665
No 153
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=58.07 E-value=77 Score=27.24 Aligned_cols=78 Identities=24% Similarity=0.287 Sum_probs=50.4
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhc--CCCceEEEEecCCCCCCHHHHHHHHhccCCCCE
Q 007940 16 AGLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRER--KDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPV 93 (584)
Q Consensus 16 ~gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~--~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPV 93 (584)
..|||.||-| +... .-++-.|.++..+.+.+++.+.+++. ...+.+|++.-.+-. .--+.+++++.....|+
T Consensus 2 ~~mkiaVIgD-~dtv----~GFrLaGi~~~~v~~~ee~~~~~~~l~~~~digIIlIte~~a~-~i~~~i~~~~~~~~~P~ 75 (109)
T 2d00_A 2 VPVRMAVIAD-PETA----QGFRLAGLEGYGASSAEEAQSLLETLVERGGYALVAVDEALLP-DPERAVERLMRGRDLPV 75 (109)
T ss_dssp CCCCEEEEEC-HHHH----HHHHHTTSEEEECSSHHHHHHHHHHHHHHCCCSEEEEETTTCS-CHHHHHHHHTTCCCCCE
T ss_pred CccEEEEEeC-HHHH----HHHHHcCCeEEEeCCHHHHHHHHHHHhhCCCeEEEEEeHHHHH-hhHHHHHHHHhCCCCeE
Confidence 3579999999 4333 33445688888888887776655541 134899999887655 33345556654566888
Q ss_pred EEEEcC
Q 007940 94 IMMSVD 99 (584)
Q Consensus 94 IvlSa~ 99 (584)
|+.-..
T Consensus 76 Il~IPs 81 (109)
T 2d00_A 76 LLPIAG 81 (109)
T ss_dssp EEEESC
T ss_pred EEEECC
Confidence 776544
No 154
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}
Probab=57.12 E-value=51 Score=33.46 Aligned_cols=81 Identities=21% Similarity=0.230 Sum_probs=56.6
Q ss_pred HHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEecCCC-----CCCHHHHHHHHhccCCCCEEEEEcCCChHHHHhh
Q 007940 35 KMLKKCSYEVT-TCGLARDALSLLRERKDGYDIVISDVNMP-----DMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKG 108 (584)
Q Consensus 35 ~lL~~~gy~V~-~a~~~~eAL~~L~~~~~~pDLVIlDi~MP-----dmdGlELL~~Ir~~~~iPVIvlSa~~d~~~~~~a 108 (584)
+.++..+..|. .+.+.++|..+... .+|.|+++-.-. ....+++++.++...++|||+-.+-.+.+.+.++
T Consensus 118 ~~l~~~g~~v~~~v~s~~~a~~a~~~---GaD~i~v~g~~~GG~~G~~~~~~ll~~i~~~~~iPviaaGGI~~~~dv~~a 194 (326)
T 3bo9_A 118 RELKENGTKVIPVVASDSLARMVERA---GADAVIAEGMESGGHIGEVTTFVLVNKVSRSVNIPVIAAGGIADGRGMAAA 194 (326)
T ss_dssp HHHHHTTCEEEEEESSHHHHHHHHHT---TCSCEEEECTTSSEECCSSCHHHHHHHHHHHCSSCEEEESSCCSHHHHHHH
T ss_pred HHHHHcCCcEEEEcCCHHHHHHHHHc---CCCEEEEECCCCCccCCCccHHHHHHHHHHHcCCCEEEECCCCCHHHHHHH
Confidence 34445565554 46777777665542 378888854221 1356788888866668999988777778899999
Q ss_pred hhcCCceEEe
Q 007940 109 VQHGACDYLL 118 (584)
Q Consensus 109 L~~GAdDYL~ 118 (584)
+.+||+...+
T Consensus 195 l~~GA~gV~v 204 (326)
T 3bo9_A 195 FALGAEAVQM 204 (326)
T ss_dssp HHHTCSEEEE
T ss_pred HHhCCCEEEe
Confidence 9999998764
No 155
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=56.68 E-value=1.2e+02 Score=30.23 Aligned_cols=107 Identities=16% Similarity=0.089 Sum_probs=70.2
Q ss_pred CCEEEEEeCCH-HHHHHHHHHHHhCCCeEEEEC--CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCCE
Q 007940 17 GLRVLVVDDDL-AWLKILEKMLKKCSYEVTTCG--LARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPV 93 (584)
Q Consensus 17 gmrVLIVDDd~-~~r~~L~~lL~~~gy~V~~a~--~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPV 93 (584)
+++++|+-+.+ .....++++.+..+-.+...+ ..++..+.+.. .|++++--.. +.-|+.+++.+. ..+||
T Consensus 285 ~~~l~i~G~g~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~----adv~v~ps~~-e~~~~~~~EAma--~G~Pv 357 (439)
T 3fro_A 285 EMRFIIIGKGDPELEGWARSLEEKHGNVKVITEMLSREFVRELYGS----VDFVIIPSYF-EPFGLVALEAMC--LGAIP 357 (439)
T ss_dssp GEEEEEECCCCHHHHHHHHHHHHHCTTEEEECSCCCHHHHHHHHTT----CSEEEECBSC-CSSCHHHHHHHH--TTCEE
T ss_pred CeEEEEEcCCChhHHHHHHHHHhhcCCEEEEcCCCCHHHHHHHHHH----CCEEEeCCCC-CCccHHHHHHHH--CCCCe
Confidence 56777887654 344677777777773333334 44555555543 5777765443 334566777663 56888
Q ss_pred EEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHH
Q 007940 94 IMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFR 135 (584)
Q Consensus 94 IvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlr 135 (584)
|. |..+ ...+.+..| .+++..|.+.++|.+++.+++.
T Consensus 358 i~-s~~~---~~~e~~~~~-~g~~~~~~d~~~la~~i~~ll~ 394 (439)
T 3fro_A 358 IA-SAVG---GLRDIITNE-TGILVKAGDPGELANAILKALE 394 (439)
T ss_dssp EE-ESST---HHHHHCCTT-TCEEECTTCHHHHHHHHHHHHH
T ss_pred EE-cCCC---CcceeEEcC-ceEEeCCCCHHHHHHHHHHHHh
Confidence 75 4333 344555567 8999999999999999999886
No 156
>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A
Probab=55.14 E-value=31 Score=34.03 Aligned_cols=87 Identities=20% Similarity=0.117 Sum_probs=54.6
Q ss_pred HHHHHHHHHHhCCCeEE--EECCHHHHHHHHHhcCCCceEEEEecCC----CCCCHHHHHHHHhccCCCCEEEEEcCCCh
Q 007940 29 WLKILEKMLKKCSYEVT--TCGLARDALSLLRERKDGYDIVISDVNM----PDMDGFKLLEHVGLEMDLPVIMMSVDGET 102 (584)
Q Consensus 29 ~r~~L~~lL~~~gy~V~--~a~~~~eAL~~L~~~~~~pDLVIlDi~M----PdmdGlELL~~Ir~~~~iPVIvlSa~~d~ 102 (584)
..+..++.+. .|+.+. ++.+..++..+... . .|.|+.=-.. .+..+.+.+++++...++|||+..+-.+.
T Consensus 115 ~~~~a~~~~~-~g~~vi~~~~~~~~~a~~~~~~-g--ad~v~~~~~~~Gt~~~~~~~~~l~~i~~~~~iPviv~gGI~t~ 190 (264)
T 1xm3_A 115 TLKASEQLLE-EGFIVLPYTSDDVVLARKLEEL-G--VHAIMPGASPIGSGQGILNPLNLSFIIEQAKVPVIVDAGIGSP 190 (264)
T ss_dssp HHHHHHHHHH-TTCCEEEEECSCHHHHHHHHHH-T--CSCBEECSSSTTCCCCCSCHHHHHHHHHHCSSCBEEESCCCSH
T ss_pred HHHHHHHHHC-CCeEEEEEcCCCHHHHHHHHHh-C--CCEEEECCcccCCCCCCCCHHHHHHHHhcCCCCEEEEeCCCCH
Confidence 3333444333 266555 45566665554443 2 5666320000 12234778888877778999998888888
Q ss_pred HHHHhhhhcCCceEEeC
Q 007940 103 SRVMKGVQHGACDYLLK 119 (584)
Q Consensus 103 ~~~~~aL~~GAdDYL~K 119 (584)
+.+.+++++||+.+++=
T Consensus 191 eda~~~~~~GAdgViVG 207 (264)
T 1xm3_A 191 KDAAYAMELGADGVLLN 207 (264)
T ss_dssp HHHHHHHHTTCSEEEES
T ss_pred HHHHHHHHcCCCEEEEc
Confidence 89999999999998753
No 157
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=55.10 E-value=34 Score=34.13 Aligned_cols=108 Identities=12% Similarity=0.077 Sum_probs=60.4
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCCeEEEEC--CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCCEE
Q 007940 17 GLRVLVVDDDLAWLKILEKMLKKCSYEVTTCG--LARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVI 94 (584)
Q Consensus 17 gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~--~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVI 94 (584)
+.+++|+.+.+. ..+++.+++..-.|...+ ...+..+.+.. .|++|+--.-.+.-|..+++.+. ..+|||
T Consensus 240 ~~~l~i~G~~~~--~~l~~~~~~~~~~v~~~g~~~~~~~~~~~~~----adv~v~ps~~~e~~~~~~~Ea~a--~G~PvI 311 (406)
T 2gek_A 240 DVEILIVGRGDE--DELREQAGDLAGHLRFLGQVDDATKASAMRS----ADVYCAPHLGGESFGIVLVEAMA--AGTAVV 311 (406)
T ss_dssp TCEEEEESCSCH--HHHHHHTGGGGGGEEECCSCCHHHHHHHHHH----SSEEEECCCSCCSSCHHHHHHHH--HTCEEE
T ss_pred CeEEEEEcCCcH--HHHHHHHHhccCcEEEEecCCHHHHHHHHHH----CCEEEecCCCCCCCchHHHHHHH--cCCCEE
Confidence 345555555443 344444433211222222 22333444443 46766642212223556666653 357877
Q ss_pred EEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 007940 95 MMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 136 (584)
Q Consensus 95 vlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrr 136 (584)
.. .. ....+.+..|..+++..|-+.++|.+++.+++..
T Consensus 312 ~~-~~---~~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~ 349 (406)
T 2gek_A 312 AS-DL---DAFRRVLADGDAGRLVPVDDADGMAAALIGILED 349 (406)
T ss_dssp EC-CC---HHHHHHHTTTTSSEECCTTCHHHHHHHHHHHHHC
T ss_pred Ee-cC---CcHHHHhcCCCceEEeCCCCHHHHHHHHHHHHcC
Confidence 43 22 3455667778889999999999999999988753
No 158
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1
Probab=54.94 E-value=47 Score=34.67 Aligned_cols=89 Identities=15% Similarity=0.165 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHhC-CCeEE--EECCHHHHHHHHHhcCCCceEEEEecCC-----------CCCCHHHHHHHHhc---cC
Q 007940 27 LAWLKILEKMLKKC-SYEVT--TCGLARDALSLLRERKDGYDIVISDVNM-----------PDMDGFKLLEHVGL---EM 89 (584)
Q Consensus 27 ~~~r~~L~~lL~~~-gy~V~--~a~~~~eAL~~L~~~~~~pDLVIlDi~M-----------PdmdGlELL~~Ir~---~~ 89 (584)
....+.++.+-+.. +..|. .+.+.++|..+.+ .++|.|.+-..- .+...++.+..+.. ..
T Consensus 179 ~~~~e~i~~ir~~~~~~pviv~~v~~~~~a~~a~~---~Gad~I~vg~~~G~~~~~~~~~~~g~p~~~~l~~v~~~~~~~ 255 (404)
T 1eep_A 179 TRIIELIKKIKTKYPNLDLIAGNIVTKEAALDLIS---VGADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEACNNT 255 (404)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHT---TTCSEEEECSSCSTTSHHHHHHCCCCCHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHCCCCeEEEcCCCcHHHHHHHHh---cCCCEEEECCCCCcCcCccccCCCCcchHHHHHHHHHHHhhc
Confidence 34555555555555 44444 4566666655543 248888882110 02224555555532 34
Q ss_pred CCCEEEEEcCCChHHHHhhhhcCCceEEe
Q 007940 90 DLPVIMMSVDGETSRVMKGVQHGACDYLL 118 (584)
Q Consensus 90 ~iPVIvlSa~~d~~~~~~aL~~GAdDYL~ 118 (584)
++|||....-.+...+.+++.+||+...+
T Consensus 256 ~ipVia~GGI~~~~d~~~ala~GAd~V~i 284 (404)
T 1eep_A 256 NICIIADGGIRFSGDVVKAIAAGADSVMI 284 (404)
T ss_dssp SCEEEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred CceEEEECCCCCHHHHHHHHHcCCCHHhh
Confidence 78998877777889999999999998765
No 159
>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A*
Probab=54.25 E-value=82 Score=32.35 Aligned_cols=77 Identities=19% Similarity=0.170 Sum_probs=53.3
Q ss_pred hCCCeEE-EECCHHHHHHHHHhcCCCceEEEEecC---------CCC-------CCHHHHHHHHhccCCCCEEEEEcCCC
Q 007940 39 KCSYEVT-TCGLARDALSLLRERKDGYDIVISDVN---------MPD-------MDGFKLLEHVGLEMDLPVIMMSVDGE 101 (584)
Q Consensus 39 ~~gy~V~-~a~~~~eAL~~L~~~~~~pDLVIlDi~---------MPd-------mdGlELL~~Ir~~~~iPVIvlSa~~d 101 (584)
..+..|. .+.+.+++..+... .+|.|+++-. .+. ...+++++.++...++|||+...-.+
T Consensus 143 ~~g~~v~~~v~t~~~a~~a~~~---GaD~i~v~g~~~GGh~g~~~~~~~~~~~~~~~~~~l~~i~~~~~iPViaaGGI~~ 219 (369)
T 3bw2_A 143 RAGTLTLVTATTPEEARAVEAA---GADAVIAQGVEAGGHQGTHRDSSEDDGAGIGLLSLLAQVREAVDIPVVAAGGIMR 219 (369)
T ss_dssp HTTCEEEEEESSHHHHHHHHHT---TCSEEEEECTTCSEECCCSSCCGGGTTCCCCHHHHHHHHHHHCSSCEEEESSCCS
T ss_pred HCCCeEEEECCCHHHHHHHHHc---CCCEEEEeCCCcCCcCCCcccccccccccccHHHHHHHHHHhcCceEEEECCCCC
Confidence 3455444 56777776655442 3899998531 111 23488888887666899988776668
Q ss_pred hHHHHhhhhcCCceEEe
Q 007940 102 TSRVMKGVQHGACDYLL 118 (584)
Q Consensus 102 ~~~~~~aL~~GAdDYL~ 118 (584)
.+.+.+++.+||+.+..
T Consensus 220 ~~~~~~~l~~GAd~V~v 236 (369)
T 3bw2_A 220 GGQIAAVLAAGADAAQL 236 (369)
T ss_dssp HHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHcCCCEEEE
Confidence 89999999999987653
No 160
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=54.10 E-value=5 Score=40.16 Aligned_cols=75 Identities=20% Similarity=0.160 Sum_probs=45.9
Q ss_pred CEEEEEeCC--HHHHHHHHHHHHhCCCeEEEECCHHH--HHHHHHhcCCCceEEEEecCCC-CCC--HHHHHHH-HhccC
Q 007940 18 LRVLVVDDD--LAWLKILEKMLKKCSYEVTTCGLARD--ALSLLRERKDGYDIVISDVNMP-DMD--GFKLLEH-VGLEM 89 (584)
Q Consensus 18 mrVLIVDDd--~~~r~~L~~lL~~~gy~V~~a~~~~e--AL~~L~~~~~~pDLVIlDi~MP-dmd--GlELL~~-Ir~~~ 89 (584)
.|||||+++ +.....|.+.|+..||+|.......- -.+.|.+ ||+||++-... ..+ -++.++. ++ .
T Consensus 5 ~~vLiV~g~~~~~~a~~l~~aL~~~g~~V~~i~~~~~~~~~~~L~~----yDvIIl~d~~~~~l~~~~~~~L~~yV~--~ 78 (259)
T 3rht_A 5 TRVLYCGDTSLETAAGYLAGLMTSWQWEFDYIPSHVGLDVGELLAK----QDLVILSDYPAERMTAQAIDQLVTMVK--A 78 (259)
T ss_dssp -CEEEEESSCTTTTHHHHHHHHHHTTCCCEEECTTSCBCSSHHHHT----CSEEEEESCCGGGBCHHHHHHHHHHHH--T
T ss_pred ceEEEECCCCchhHHHHHHHHHHhCCceEEEecccccccChhHHhc----CCEEEEcCCccccCCHHHHHHHHHHHH--h
Confidence 489999998 66788899999999999887654321 1233432 89999872221 122 3334443 33 2
Q ss_pred CCCEEEEEc
Q 007940 90 DLPVIMMSV 98 (584)
Q Consensus 90 ~iPVIvlSa 98 (584)
.--+|++..
T Consensus 79 GGgLi~~gG 87 (259)
T 3rht_A 79 GCGLVMLGG 87 (259)
T ss_dssp TCEEEEECS
T ss_pred CCeEEEecC
Confidence 445666654
No 161
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=53.37 E-value=87 Score=31.64 Aligned_cols=108 Identities=17% Similarity=0.175 Sum_probs=63.8
Q ss_pred CCEEEEEeCC---HHHHHHHHHHHHhCCC--eEEEECC--HHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccC
Q 007940 17 GLRVLVVDDD---LAWLKILEKMLKKCSY--EVTTCGL--ARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEM 89 (584)
Q Consensus 17 gmrVLIVDDd---~~~r~~L~~lL~~~gy--~V~~a~~--~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~ 89 (584)
+++++|+-+. ......+++++++.+. .|...+. ..+..+.+.. .|++++--. .+.-|+.+++.+. .
T Consensus 276 ~~~l~i~G~~~~~g~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~~~----adv~v~ps~-~e~~~~~~~Eama--~ 348 (438)
T 3c48_A 276 NLRVIICGGPSGPNATPDTYRHMAEELGVEKRIRFLDPRPPSELVAVYRA----ADIVAVPSF-NESFGLVAMEAQA--S 348 (438)
T ss_dssp SEEEEEECCBC------CHHHHHHHHTTCTTTEEEECCCCHHHHHHHHHH----CSEEEECCS-CCSSCHHHHHHHH--T
T ss_pred ceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEcCCCChHHHHHHHHh----CCEEEECcc-ccCCchHHHHHHH--c
Confidence 4566666651 1234555566655442 2443332 2555555554 467665432 2233566666653 5
Q ss_pred CCCEEEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHH
Q 007940 90 DLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFR 135 (584)
Q Consensus 90 ~iPVIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlr 135 (584)
.+|||.. ..+. ..+.+..|..+++..|.+.++|.+++.+++.
T Consensus 349 G~PvI~~-~~~~---~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~ 390 (438)
T 3c48_A 349 GTPVIAA-RVGG---LPIAVAEGETGLLVDGHSPHAWADALATLLD 390 (438)
T ss_dssp TCCEEEE-SCTT---HHHHSCBTTTEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCEEec-CCCC---hhHHhhCCCcEEECCCCCHHHHHHHHHHHHc
Confidence 6888753 3332 3455667888999999999999999998875
No 162
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=53.32 E-value=63 Score=31.87 Aligned_cols=74 Identities=18% Similarity=0.250 Sum_probs=48.4
Q ss_pred HHHHHHHHhcCCCceEEEEecCC------CCCCHHHHHHHHhccCCCCEEEEEcCCChHHHHhhhhcCCceEEeCCCCHH
Q 007940 51 RDALSLLRERKDGYDIVISDVNM------PDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMK 124 (584)
Q Consensus 51 ~eAL~~L~~~~~~pDLVIlDi~M------PdmdGlELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~ 124 (584)
++..+.+.. .|++++-... ++.-|..+++.+. ..+|||. +..+ ...+.+..| .+++..|-+.+
T Consensus 264 ~~~~~~~~~----ad~~v~ps~~~~~~~~~e~~~~~~~Ea~a--~G~PvI~-~~~~---~~~e~i~~~-~g~~~~~~d~~ 332 (394)
T 3okp_A 264 QDMINTLAA----ADIFAMPARTRGGGLDVEGLGIVYLEAQA--CGVPVIA-GTSG---GAPETVTPA-TGLVVEGSDVD 332 (394)
T ss_dssp HHHHHHHHH----CSEEEECCCCBGGGTBCCSSCHHHHHHHH--TTCCEEE-CSST---TGGGGCCTT-TEEECCTTCHH
T ss_pred HHHHHHHHh----CCEEEecCccccccccccccCcHHHHHHH--cCCCEEE-eCCC---ChHHHHhcC-CceEeCCCCHH
Confidence 444444443 4677664332 1334566676653 4688886 3333 234566778 99999999999
Q ss_pred HHHHHHHHHHH
Q 007940 125 ELRNIWQHVFR 135 (584)
Q Consensus 125 eL~~aI~~vlr 135 (584)
+|.+++.+++.
T Consensus 333 ~l~~~i~~l~~ 343 (394)
T 3okp_A 333 KLSELLIELLD 343 (394)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999998875
No 163
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=52.32 E-value=16 Score=35.19 Aligned_cols=84 Identities=11% Similarity=0.110 Sum_probs=49.7
Q ss_pred HHHHHHHhCCCeEEE-EC--CHHHHHHHHHhcCCCce-EEEEecCCCCCC---------HHHHHHHHhccCCCCEEEEEc
Q 007940 32 ILEKMLKKCSYEVTT-CG--LARDALSLLRERKDGYD-IVISDVNMPDMD---------GFKLLEHVGLEMDLPVIMMSV 98 (584)
Q Consensus 32 ~L~~lL~~~gy~V~~-a~--~~~eAL~~L~~~~~~pD-LVIlDi~MPdmd---------GlELL~~Ir~~~~iPVIvlSa 98 (584)
.+.+.+++.|..+.. +. +..+.++.+... .| +|.+ +..++.. +++.+++++...++||++-.+
T Consensus 124 ~~~~~~~~~g~~~~~~i~~~t~~e~~~~~~~~---~d~~i~~-~~~~G~~g~~~~~~~~~~~~i~~l~~~~~~pi~~~GG 199 (248)
T 1geq_A 124 EFTEIAREEGIKTVFLAAPNTPDERLKVIDDM---TTGFVYL-VSLYGTTGAREEIPKTAYDLLRRAKRICRNKVAVGFG 199 (248)
T ss_dssp HHHHHHHHHTCEEEEEECTTCCHHHHHHHHHH---CSSEEEE-ECCC-------CCCHHHHHHHHHHHHHCSSCEEEESC
T ss_pred HHHHHHHHhCCCeEEEECCCCHHHHHHHHHhc---CCCeEEE-EECCccCCCCCCCChhHHHHHHHHHhhcCCCEEEEee
Confidence 444455555654432 22 345666655543 23 4433 3335433 355777776655789887666
Q ss_pred CCChHHHHhhhhcCCceEEeC
Q 007940 99 DGETSRVMKGVQHGACDYLLK 119 (584)
Q Consensus 99 ~~d~~~~~~aL~~GAdDYL~K 119 (584)
-...+.+.+++.+||+.+++=
T Consensus 200 I~~~e~i~~~~~~Gad~vivG 220 (248)
T 1geq_A 200 VSKREHVVSLLKEGANGVVVG 220 (248)
T ss_dssp CCSHHHHHHHHHTTCSEEEEC
T ss_pred cCCHHHHHHHHHcCCCEEEEc
Confidence 666588888889999999865
No 164
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=51.66 E-value=85 Score=33.93 Aligned_cols=99 Identities=19% Similarity=0.274 Sum_probs=64.0
Q ss_pred CCEEEEEe----CCHHHHHHHHHHHHhC-CCeEE--EECCHHHHHHHHHhcCCCceEEEEecCCCC------------CC
Q 007940 17 GLRVLVVD----DDLAWLKILEKMLKKC-SYEVT--TCGLARDALSLLRERKDGYDIVISDVNMPD------------MD 77 (584)
Q Consensus 17 gmrVLIVD----Dd~~~r~~L~~lL~~~-gy~V~--~a~~~~eAL~~L~~~~~~pDLVIlDi~MPd------------md 77 (584)
|..+++++ +.....+.++.+-+.. +..|. .+.+.++|..++.. +.|.|.+.+. |+ ..
T Consensus 243 G~d~I~id~a~g~~~~~~~~i~~ir~~~p~~~Vi~g~v~t~e~a~~l~~a---GaD~I~Vg~g-~Gs~~~tr~~~g~g~p 318 (496)
T 4fxs_A 243 GVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEA---GVSAVKVGIG-PGSICTTRIVTGVGVP 318 (496)
T ss_dssp TCSEEEEECSCTTSHHHHHHHHHHHHHCTTCCEEEEEECSHHHHHHHHHH---TCSEEEECSS-CCTTBCHHHHHCCCCC
T ss_pred cCceEEeccccccchHHHHHHHHHHHHCCCceEEEcccCcHHHHHHHHHh---CCCEEEECCC-CCcCcccccccCCCcc
Confidence 45677776 4555667777777766 33332 35677777666553 3788887532 21 22
Q ss_pred HHHHHHHHhc---cCCCCEEEEEcCCChHHHHhhhhcCCceEEeC
Q 007940 78 GFKLLEHVGL---EMDLPVIMMSVDGETSRVMKGVQHGACDYLLK 119 (584)
Q Consensus 78 GlELL~~Ir~---~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~K 119 (584)
-++++..+.. ...+|||.-.+-.....+.+++.+||+..++=
T Consensus 319 ~~~~i~~v~~~~~~~~iPVIa~GGI~~~~di~kala~GAd~V~iG 363 (496)
T 4fxs_A 319 QITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMVG 363 (496)
T ss_dssp HHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred HHHHHHHHHHHhccCCCeEEEeCCCCCHHHHHHHHHcCCCeEEec
Confidence 3455555432 33699998767778899999999999987653
No 165
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=51.54 E-value=52 Score=31.76 Aligned_cols=67 Identities=18% Similarity=0.259 Sum_probs=46.3
Q ss_pred HHHHHHHHHhcCCCceEEEE-ecCC----CCCCHHHHHHHHhccCCCCEEEEEcCCChHHHHhhhhcCCceEEeC
Q 007940 50 ARDALSLLRERKDGYDIVIS-DVNM----PDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLK 119 (584)
Q Consensus 50 ~~eAL~~L~~~~~~pDLVIl-Di~M----PdmdGlELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~K 119 (584)
..+....+.+. .++.|++ ++.- .+. .++++++++....+|||...+-...+.+.++++.||+..++=
T Consensus 158 ~~e~~~~~~~~--G~~~i~~t~~~~~g~~~g~-~~~~i~~l~~~~~ipvia~GGI~~~ed~~~~~~~Gadgv~vg 229 (266)
T 2w6r_A 158 LRDWVVEVEKR--GAGEILLTSIDRDGTKSGY-DTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAA 229 (266)
T ss_dssp HHHHHHHHHHT--TCSEEEEEETTTTTTCSCC-CHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHHTCSEEEES
T ss_pred HHHHHHHHHHc--CCCEEEEEeecCCCCcCCC-CHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHcCCHHHHcc
Confidence 34544544443 2565554 4432 222 378999998777899999888888888999999999987643
No 166
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=51.23 E-value=82 Score=30.01 Aligned_cols=77 Identities=18% Similarity=0.221 Sum_probs=51.0
Q ss_pred HHHHHHHHhcCCCce-EEEEecCCCCC-C--HHHHHHHHhccCCCCEEEEEcCCChHHHHhhhhcCCceEEe------CC
Q 007940 51 RDALSLLRERKDGYD-IVISDVNMPDM-D--GFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLL------KP 120 (584)
Q Consensus 51 ~eAL~~L~~~~~~pD-LVIlDi~MPdm-d--GlELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~------KP 120 (584)
.+.+..+.+.. ++ +++.++.-.++ . .++++++++....+|||....-...+.+.++++.||+..++ .|
T Consensus 155 ~e~~~~~~~~G--~~~i~~~~~~~~g~~~g~~~~~i~~l~~~~~ipvia~GGI~~~~d~~~~~~~Gadgv~vgsal~~~~ 232 (252)
T 1ka9_F 155 VEWAVKGVELG--AGEILLTSMDRDGTKEGYDLRLTRMVAEAVGVPVIASGGAGRMEHFLEAFQAGAEAALAASVFHFGE 232 (252)
T ss_dssp HHHHHHHHHHT--CCEEEEEETTTTTTCSCCCHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTS
T ss_pred HHHHHHHHHcC--CCEEEEecccCCCCcCCCCHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHCCCHHHHHHHHHHcCC
Confidence 44444444432 55 44455532221 2 38899998776789999888777778888899999998874 35
Q ss_pred CCHHHHHHH
Q 007940 121 IRMKELRNI 129 (584)
Q Consensus 121 ~~~~eL~~a 129 (584)
+...++++.
T Consensus 233 ~~~~~~~~~ 241 (252)
T 1ka9_F 233 IPIPKLKRY 241 (252)
T ss_dssp SCHHHHHHH
T ss_pred CCHHHHHHH
Confidence 666666554
No 167
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Probab=50.99 E-value=28 Score=32.63 Aligned_cols=77 Identities=16% Similarity=0.225 Sum_probs=51.5
Q ss_pred HHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEecCCC-CCCHHHHHHHHhccC--CCCEEEEEcCCChHHHHhhhh
Q 007940 35 KMLKKCSYEVT-TCGLARDALSLLRERKDGYDIVISDVNMP-DMDGFKLLEHVGLEM--DLPVIMMSVDGETSRVMKGVQ 110 (584)
Q Consensus 35 ~lL~~~gy~V~-~a~~~~eAL~~L~~~~~~pDLVIlDi~MP-dmdGlELL~~Ir~~~--~iPVIvlSa~~d~~~~~~aL~ 110 (584)
+..+..|..+. .+.+..++...... .+|.|++ .| +..|++.+++++... ++||+...+-. .+.+.++++
T Consensus 95 ~~~~~~g~~~~~g~~t~~e~~~a~~~---G~d~v~v---~~t~~~g~~~~~~l~~~~~~~ipvia~GGI~-~~~i~~~~~ 167 (212)
T 2v82_A 95 RRAVGYGMTVCPGCATATEAFTALEA---GAQALKI---FPSSAFGPQYIKALKAVLPSDIAVFAVGGVT-PENLAQWID 167 (212)
T ss_dssp HHHHHTTCEEECEECSHHHHHHHHHT---TCSEEEE---TTHHHHCHHHHHHHHTTSCTTCEEEEESSCC-TTTHHHHHH
T ss_pred HHHHHcCCCEEeecCCHHHHHHHHHC---CCCEEEE---ecCCCCCHHHHHHHHHhccCCCeEEEeCCCC-HHHHHHHHH
Confidence 44555665432 46788888766542 3798886 22 123578888876543 48888776655 677888899
Q ss_pred cCCceEEe
Q 007940 111 HGACDYLL 118 (584)
Q Consensus 111 ~GAdDYL~ 118 (584)
+||+.++.
T Consensus 168 ~Ga~gv~v 175 (212)
T 2v82_A 168 AGCAGAGL 175 (212)
T ss_dssp HTCSEEEE
T ss_pred cCCCEEEE
Confidence 99999874
No 168
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=50.90 E-value=13 Score=37.73 Aligned_cols=69 Identities=9% Similarity=-0.031 Sum_probs=48.0
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCC-CCCHHHHHHHH
Q 007940 17 GLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMP-DMDGFKLLEHV 85 (584)
Q Consensus 17 gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MP-dmdGlELL~~I 85 (584)
+-++.+||-++...+.|++.++...-..+...++..++..+......+|+|++|---- ..+.-++++.|
T Consensus 113 ~d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDPPYe~k~~~~~vl~~L 182 (283)
T 2oo3_A 113 QDRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPSYERKEEYKEIPYAI 182 (283)
T ss_dssp TSEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCSCTTSCEEEEECCCCCSTTHHHHHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcCCCCCccEEEECCCCCCCcHHHHHHHHH
Confidence 4689999999999999999997754333456778888887755444599999996322 22344444444
No 169
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=50.71 E-value=40 Score=28.79 Aligned_cols=27 Identities=26% Similarity=0.545 Sum_probs=14.5
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCeEE
Q 007940 19 RVLVVDDDLAWLKILEKMLKKCSYEVT 45 (584)
Q Consensus 19 rVLIVDDd~~~r~~L~~lL~~~gy~V~ 45 (584)
+|||+..+....+.+-.++.+.||.|.
T Consensus 53 kiliisndkqllkemlelisklgykvf 79 (134)
T 2lci_A 53 KILIISNDKQLLKEMLELISKLGYKVF 79 (134)
T ss_dssp CEEEEESCHHHHHHHHHHHHHHTCCEE
T ss_pred eEEEEcCcHHHHHHHHHHHHHhCceeE
Confidence 456666555555555555555555443
No 170
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=50.65 E-value=84 Score=32.44 Aligned_cols=107 Identities=14% Similarity=0.121 Sum_probs=68.2
Q ss_pred CCEEEEEeCCH-HHHHHHHHHHHhCCCeEE-EECCHHHH-HHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCCE
Q 007940 17 GLRVLVVDDDL-AWLKILEKMLKKCSYEVT-TCGLARDA-LSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPV 93 (584)
Q Consensus 17 gmrVLIVDDd~-~~r~~L~~lL~~~gy~V~-~a~~~~eA-L~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPV 93 (584)
+.+++||-+.+ ..++.++++.+..+-.|. ..+-..+. ...+.. .|++++--. .+.-|+-+++.+. ..+||
T Consensus 320 ~~~l~ivG~g~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----adv~v~pS~-~E~~~~~~lEAma--~G~Pv 392 (485)
T 1rzu_A 320 GGRLVVLGAGDVALEGALLAAASRHHGRVGVAIGYNEPLSHLMQAG----CDAIIIPSR-FEPCGLTQLYALR--YGCIP 392 (485)
T ss_dssp TCEEEEEECBCHHHHHHHHHHHHHTTTTEEEEESCCHHHHHHHHHH----CSEEEECCS-CCSSCSHHHHHHH--HTCEE
T ss_pred CceEEEEeCCchHHHHHHHHHHHhCCCcEEEecCCCHHHHHHHHhc----CCEEEECcc-cCCCCHHHHHHHH--CCCCE
Confidence 46778887754 356677777776654443 33433343 345544 467776433 2333555666653 46888
Q ss_pred EEEEcCCChHHHHhhhhcC---------CceEEeCCCCHHHHHHHHHHHH
Q 007940 94 IMMSVDGETSRVMKGVQHG---------ACDYLLKPIRMKELRNIWQHVF 134 (584)
Q Consensus 94 IvlSa~~d~~~~~~aL~~G---------AdDYL~KP~~~~eL~~aI~~vl 134 (584)
|. |.. ....+.+..| ..+++..|-+.++|.+++.+++
T Consensus 393 I~-s~~---gg~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~~i~~ll 438 (485)
T 1rzu_A 393 VV-ART---GGLADTVIDANHAALASKAATGVQFSPVTLDGLKQAIRRTV 438 (485)
T ss_dssp EE-ESS---HHHHHHCCBCCHHHHHTTCCCBEEESSCSHHHHHHHHHHHH
T ss_pred EE-eCC---CChhheecccccccccccCCcceEeCCCCHHHHHHHHHHHH
Confidence 85 332 3445667777 7899999999999999999887
No 171
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5
Probab=50.42 E-value=51 Score=30.90 Aligned_cols=87 Identities=14% Similarity=0.166 Sum_probs=55.5
Q ss_pred HHHHHHHHHhC-CCeE-EEECCHHHHHHHHHhcCCCceEEEEecC-----CCC----CCHHHHHHHHhccCCCCEEEEEc
Q 007940 30 LKILEKMLKKC-SYEV-TTCGLARDALSLLRERKDGYDIVISDVN-----MPD----MDGFKLLEHVGLEMDLPVIMMSV 98 (584)
Q Consensus 30 r~~L~~lL~~~-gy~V-~~a~~~~eAL~~L~~~~~~pDLVIlDi~-----MPd----mdGlELL~~Ir~~~~iPVIvlSa 98 (584)
.+.++.+-+.. +..+ ..+.+..++..+... +.|+|.+-.. ..+ ..+++++++++...++|||....
T Consensus 107 ~~~i~~~~~~~~~~~v~~~~~t~~e~~~~~~~---G~d~i~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~ipvia~GG 183 (223)
T 1y0e_A 107 DELVSYIRTHAPNVEIMADIATVEEAKNAARL---GFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSVDAKVIAEGN 183 (223)
T ss_dssp HHHHHHHHHHCTTSEEEEECSSHHHHHHHHHT---TCSEEECTTTTSSTTSTTCCTTHHHHHHHHHHHHHCCSEEEEESS
T ss_pred HHHHHHHHHhCCCceEEecCCCHHHHHHHHHc---CCCEEEeCCCcCcCCCCCCCCCcccHHHHHHHHhhCCCCEEEecC
Confidence 34444444443 4444 355677777665432 3687765321 011 12466788886656799998777
Q ss_pred CCChHHHHhhhhcCCceEEeC
Q 007940 99 DGETSRVMKGVQHGACDYLLK 119 (584)
Q Consensus 99 ~~d~~~~~~aL~~GAdDYL~K 119 (584)
-.+.+.+.+++++||+.++.=
T Consensus 184 I~~~~~~~~~~~~Gad~v~vG 204 (223)
T 1y0e_A 184 VITPDMYKRVMDLGVHCSVVG 204 (223)
T ss_dssp CCSHHHHHHHHHTTCSEEEEC
T ss_pred CCCHHHHHHHHHcCCCEEEEC
Confidence 778899999999999988764
No 172
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=49.68 E-value=1.4e+02 Score=26.39 Aligned_cols=76 Identities=14% Similarity=0.238 Sum_probs=49.8
Q ss_pred CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCCEEEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHH
Q 007940 49 LARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRN 128 (584)
Q Consensus 49 ~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~ 128 (584)
...+....++. .|++|+--. .+.-|+.+++.+. ..+|||+. .. ....+.+..|..+++. +.+.++|.+
T Consensus 87 ~~~e~~~~~~~----adi~v~ps~-~e~~~~~~~Eama--~G~PvI~~-~~---~~~~e~i~~~~~g~~~-~~d~~~l~~ 154 (177)
T 2f9f_A 87 SEEELIDLYSR----CKGLLCTAK-DEDFGLTPIEAMA--SGKPVIAV-NE---GGFKETVINEKTGYLV-NADVNEIID 154 (177)
T ss_dssp CHHHHHHHHHH----CSEEEECCS-SCCSCHHHHHHHH--TTCCEEEE-SS---HHHHHHCCBTTTEEEE-CSCHHHHHH
T ss_pred CHHHHHHHHHh----CCEEEeCCC-cCCCChHHHHHHH--cCCcEEEe-CC---CCHHHHhcCCCccEEe-CCCHHHHHH
Confidence 33445555554 467776322 2333566666653 56888753 22 3455667778889999 999999999
Q ss_pred HHHHHHHh
Q 007940 129 IWQHVFRK 136 (584)
Q Consensus 129 aI~~vlrr 136 (584)
++.+++..
T Consensus 155 ~i~~l~~~ 162 (177)
T 2f9f_A 155 AMKKVSKN 162 (177)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhC
Confidence 99998854
No 173
>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*
Probab=49.44 E-value=50 Score=30.93 Aligned_cols=68 Identities=18% Similarity=0.160 Sum_probs=44.6
Q ss_pred ECCHHHHHHHHHhcCCCceEEEEecCCC--------CCCHHHHHHHHhccCC-CCEEEEEcCCChHHHHhhhhcCCceEE
Q 007940 47 CGLARDALSLLRERKDGYDIVISDVNMP--------DMDGFKLLEHVGLEMD-LPVIMMSVDGETSRVMKGVQHGACDYL 117 (584)
Q Consensus 47 a~~~~eAL~~L~~~~~~pDLVIlDi~MP--------dmdGlELL~~Ir~~~~-iPVIvlSa~~d~~~~~~aL~~GAdDYL 117 (584)
+.+..++..+... .+|.|++....| ...|++.++.++.... +||++..+-. .+.+.+++++||+.+.
T Consensus 123 ~~t~~e~~~a~~~---g~d~v~~~~v~~t~~~~~~~~~~~~~~l~~~~~~~~~~pvia~GGI~-~~nv~~~~~~Ga~gv~ 198 (227)
T 2tps_A 123 AHTMSEVKQAEED---GADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQGISIPIVGIGGIT-IDNAAPVIQAGADGVS 198 (227)
T ss_dssp ECSHHHHHHHHHH---TCSEEEECCSSCCCSSSSCCCCCTTHHHHHHHHTTCCCCEEEESSCC-TTTSHHHHHTTCSEEE
T ss_pred cCCHHHHHHHHhC---CCCEEEECCCcCCCCCCCCCCccCHHHHHHHHHhCCCCCEEEEcCCC-HHHHHHHHHcCCCEEE
Confidence 5677776554432 378888622112 1236788888865555 8988766555 6677788889999875
Q ss_pred e
Q 007940 118 L 118 (584)
Q Consensus 118 ~ 118 (584)
+
T Consensus 199 v 199 (227)
T 2tps_A 199 M 199 (227)
T ss_dssp E
T ss_pred E
Confidence 4
No 174
>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*
Probab=49.40 E-value=71 Score=31.50 Aligned_cols=106 Identities=15% Similarity=0.207 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHhCCCeEEE-----ECCHHHHHHHHHhcCCCceEEEE---------ecCC--C-------CCCH-----
Q 007940 27 LAWLKILEKMLKKCSYEVTT-----CGLARDALSLLRERKDGYDIVIS---------DVNM--P-------DMDG----- 78 (584)
Q Consensus 27 ~~~r~~L~~lL~~~gy~V~~-----a~~~~eAL~~L~~~~~~pDLVIl---------Di~M--P-------dmdG----- 78 (584)
....+.++.+-+..+..|.. ..+..+....+.+. +.|.|++ +..- | +..|
T Consensus 150 ~~~~eii~~v~~~~~~pv~vk~~~~~~~~~~~a~~l~~~--G~d~i~v~~~~~g~~i~~~~~~~~~~~~~~g~~g~~~~~ 227 (311)
T 1ep3_A 150 EVAAALVKACKAVSKVPLYVKLSPNVTDIVPIAKAVEAA--GADGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKP 227 (311)
T ss_dssp HHHHHHHHHHHHHCSSCEEEEECSCSSCSHHHHHHHHHT--TCSEEEECCCEEECCBCTTTCSBSSTTSCEEEESGGGHH
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCChHHHHHHHHHHHHc--CCCEEEEeCCCcccccCcccCCccccCCCCcccCccchH
Confidence 34455666555554544432 12335555555553 3788877 3321 1 1112
Q ss_pred --HHHHHHHhccCCCCEEEEEcCCChHHHHhhhhcCCceEE------eCCCCHHHHHHHHHHHH
Q 007940 79 --FKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYL------LKPIRMKELRNIWQHVF 134 (584)
Q Consensus 79 --lELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL------~KP~~~~eL~~aI~~vl 134 (584)
+++++.++...++|||....-.+.+.+.+++.+||+... ..|....++.+.++..+
T Consensus 228 ~~~~~i~~i~~~~~ipvia~GGI~~~~d~~~~l~~GAd~V~vg~~~l~~p~~~~~i~~~l~~~~ 291 (311)
T 1ep3_A 228 VALKLIHQVAQDVDIPIIGMGGVANAQDVLEMYMAGASAVAVGTANFADPFVCPKIIDKLPELM 291 (311)
T ss_dssp HHHHHHHHHHTTCSSCEEECSSCCSHHHHHHHHHHTCSEEEECTHHHHCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCEEEECCcCCHHHHHHHHHcCCCEEEECHHHHcCcHHHHHHHHHHHHHH
Confidence 477778876668999987766788899999999988753 33554455554444433
No 175
>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A*
Probab=48.87 E-value=1.9e+02 Score=29.31 Aligned_cols=100 Identities=16% Similarity=0.178 Sum_probs=66.3
Q ss_pred CEEEEEe----CCHHHHHHHHHHHHhCC-CeEE--EECCHHHHHHHHHhcCCCceEEEEecCCCCC------------C-
Q 007940 18 LRVLVVD----DDLAWLKILEKMLKKCS-YEVT--TCGLARDALSLLRERKDGYDIVISDVNMPDM------------D- 77 (584)
Q Consensus 18 mrVLIVD----Dd~~~r~~L~~lL~~~g-y~V~--~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdm------------d- 77 (584)
..++.++ +.....+.++.+-+..+ ..|. .+.+.++|..++.. +.|.|++--+ ++. .
T Consensus 121 ~~~i~i~~~~G~~~~~~~~i~~lr~~~~~~~vi~G~v~s~e~A~~a~~a---Gad~Ivvs~h-gG~~~~~~~~~~~g~~g 196 (336)
T 1ypf_A 121 PEYITIDIAHGHSNAVINMIQHIKKHLPESFVIAGNVGTPEAVRELENA---GADATKVGIG-PGKVCITKIKTGFGTGG 196 (336)
T ss_dssp CSEEEEECSSCCSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHH---TCSEEEECSS-CSTTCHHHHHHSCSSTT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHhCCCCEEEECCcCCHHHHHHHHHc---CCCEEEEecC-CCceeecccccCcCCch
Confidence 3444554 55667777877777764 3333 25677777776654 3788888332 221 1
Q ss_pred -HHHHHHHHhccCCCCEEEEEcCCChHHHHhhhhcCCceEE-eCCC
Q 007940 78 -GFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYL-LKPI 121 (584)
Q Consensus 78 -GlELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL-~KP~ 121 (584)
.++++.+++...++|||.-..-.+...+.+++.+||+... -+|+
T Consensus 197 ~~~~~l~~v~~~~~ipVIa~GGI~~g~Dv~kalalGAdaV~iGr~~ 242 (336)
T 1ypf_A 197 WQLAALRWCAKAASKPIIADGGIRTNGDVAKSIRFGATMVMIGSLF 242 (336)
T ss_dssp CHHHHHHHHHHTCSSCEEEESCCCSTHHHHHHHHTTCSEEEESGGG
T ss_pred hHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCCCEEEeChhh
Confidence 3667777765568999988788888999999999999864 3443
No 176
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=48.85 E-value=22 Score=32.39 Aligned_cols=53 Identities=26% Similarity=0.362 Sum_probs=31.9
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHHh--CCCeEEEECCHHHHHHHHHhcCCCceEEEEec
Q 007940 16 AGLRVLVVDDDLAWLKILEKMLKK--CSYEVTTCGLARDALSLLRERKDGYDIVISDV 71 (584)
Q Consensus 16 ~gmrVLIVDDd~~~r~~L~~lL~~--~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi 71 (584)
.|.||++||-|+.. .+..++.. .++.+..+.. ....+.+......||+||+|.
T Consensus 29 ~g~~vlliD~D~~~--~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~l~~~yD~viiD~ 83 (206)
T 4dzz_A 29 SGYNIAVVDTDPQM--SLTNWSKAGKAAFDVFTAAS-EKDVYGIRKDLADYDFAIVDG 83 (206)
T ss_dssp TTCCEEEEECCTTC--HHHHHHTTSCCSSEEEECCS-HHHHHTHHHHTTTSSEEEEEC
T ss_pred CCCeEEEEECCCCC--CHHHHHhcCCCCCcEEecCc-HHHHHHHHHhcCCCCEEEEEC
Confidence 47799999988542 34444432 3356665543 333344444334599999997
No 177
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=48.85 E-value=19 Score=30.72 Aligned_cols=78 Identities=18% Similarity=0.240 Sum_probs=47.5
Q ss_pred CCCCEEEEEeCC----HHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccC
Q 007940 15 PAGLRVLVVDDD----LAWLKILEKMLKKCSYEVT-TCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEM 89 (584)
Q Consensus 15 p~gmrVLIVDDd----~~~r~~L~~lL~~~gy~V~-~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~ 89 (584)
|..||||+|-.. ......+++.++..|+.+. .+....++-..+ ..+|+||+-..+..+ ++-++..-...
T Consensus 2 ~~~mkIlvvC~~G~~TSll~~kl~~~~~~~gi~~~i~~~~~~~~~~~~----~~~D~Ii~t~~l~~~--~~~~~~~~~~~ 75 (109)
T 2l2q_A 2 PGSMNILLVCGAGMSTSMLVQRIEKYAKSKNINATIEAIAETRLSEVV----DRFDVVLLAPQSRFN--KKRLEEITKPK 75 (109)
T ss_dssp CCCEEEEEESSSSCSSCHHHHHHHHHHHHHTCSEEEEEECSTTHHHHT----TTCSEEEECSCCSSH--HHHHHHHHHHH
T ss_pred CCceEEEEECCChHhHHHHHHHHHHHHHHCCCCeEEEEecHHHHHhhc----CCCCEEEECCccHHH--HHHHHHHhccc
Confidence 445789888762 2677889999988886432 222333433332 238999998766543 33333322234
Q ss_pred CCCEEEEEc
Q 007940 90 DLPVIMMSV 98 (584)
Q Consensus 90 ~iPVIvlSa 98 (584)
++||+++..
T Consensus 76 ~~pv~~I~~ 84 (109)
T 2l2q_A 76 GIPIEIINT 84 (109)
T ss_dssp TCCEEECCH
T ss_pred CCCEEEECh
Confidence 789988764
No 178
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=48.45 E-value=35 Score=33.47 Aligned_cols=96 Identities=13% Similarity=0.079 Sum_probs=58.9
Q ss_pred HHHHHHhCCC-eEEEECCHHHHHHHHHhc-CCCceEEEEecCCCCCCHHHHHHHHhccCCCCEEEEEcCCChHHHHhhhh
Q 007940 33 LEKMLKKCSY-EVTTCGLARDALSLLRER-KDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQ 110 (584)
Q Consensus 33 L~~lL~~~gy-~V~~a~~~~eAL~~L~~~-~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~ 110 (584)
+.+.|++.+. -|+...+.++++..++.. ..+..+|=+ .+-.-++++.++.++...+-.+|-.-.--+.+.+..+++
T Consensus 27 ~~~~l~~~~vv~Vir~~~~~~a~~~a~al~~gGi~~iEv--t~~t~~a~e~I~~l~~~~~~~~iGaGTVlt~~~a~~Ai~ 104 (232)
T 4e38_A 27 INNQLKALKVIPVIAIDNAEDIIPLGKVLAENGLPAAEI--TFRSDAAVEAIRLLRQAQPEMLIGAGTILNGEQALAAKE 104 (232)
T ss_dssp HHHHHHHHCEEEEECCSSGGGHHHHHHHHHHTTCCEEEE--ETTSTTHHHHHHHHHHHCTTCEEEEECCCSHHHHHHHHH
T ss_pred HHHHHHhCCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEE--eCCCCCHHHHHHHHHHhCCCCEEeECCcCCHHHHHHHHH
Confidence 4455555563 345556666666655431 234565544 444557999999987653334444444456888999999
Q ss_pred cCCceEEeCCCCHHHHHHHHH
Q 007940 111 HGACDYLLKPIRMKELRNIWQ 131 (584)
Q Consensus 111 ~GAdDYL~KP~~~~eL~~aI~ 131 (584)
+||+ |+.-|-...++.+..+
T Consensus 105 AGA~-fIvsP~~~~~vi~~~~ 124 (232)
T 4e38_A 105 AGAT-FVVSPGFNPNTVRACQ 124 (232)
T ss_dssp HTCS-EEECSSCCHHHHHHHH
T ss_pred cCCC-EEEeCCCCHHHHHHHH
Confidence 9986 5566765555555433
No 179
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=47.33 E-value=94 Score=32.06 Aligned_cols=107 Identities=9% Similarity=0.072 Sum_probs=62.3
Q ss_pred CCEEEEEeCCH-HHHHHHHHHHHhCCCeEE-EECCHHHH-HHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCCE
Q 007940 17 GLRVLVVDDDL-AWLKILEKMLKKCSYEVT-TCGLARDA-LSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPV 93 (584)
Q Consensus 17 gmrVLIVDDd~-~~r~~L~~lL~~~gy~V~-~a~~~~eA-L~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPV 93 (584)
+.+++||-+.+ ..+..++++.+..+-.|. ..+...+. ...+.. .|++++--. .+.-|+-+++.+. ..+||
T Consensus 321 ~~~l~ivG~g~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----adv~v~pS~-~E~~g~~~lEAma--~G~Pv 393 (485)
T 2qzs_A 321 GGQLALLGAGDPVLQEGFLAAAAEYPGQVGVQIGYHEAFSHRIMGG----ADVILVPSR-FEPCGLTQLYGLK--YGTLP 393 (485)
T ss_dssp TCEEEEEEEECHHHHHHHHHHHHHSTTTEEEEESCCHHHHHHHHHH----CSEEEECCS-CCSSCSHHHHHHH--HTCEE
T ss_pred CcEEEEEeCCchHHHHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHh----CCEEEECCc-cCCCcHHHHHHHH--CCCCE
Confidence 34566665543 345556666655543332 33333333 344443 466665332 2233455565543 36888
Q ss_pred EEEEcCCChHHHHhhhhcC---------CceEEeCCCCHHHHHHHHHHHH
Q 007940 94 IMMSVDGETSRVMKGVQHG---------ACDYLLKPIRMKELRNIWQHVF 134 (584)
Q Consensus 94 IvlSa~~d~~~~~~aL~~G---------AdDYL~KP~~~~eL~~aI~~vl 134 (584)
|.. .. ....+.+..| ..+++..|-+.++|.+++.+++
T Consensus 394 I~s-~~---gg~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~~i~~ll 439 (485)
T 2qzs_A 394 LVR-RT---GGLADTVSDCSLENLADGVASGFVFEDSNAWSLLRAIRRAF 439 (485)
T ss_dssp EEE-SS---HHHHHHCCBCCHHHHHTTCCCBEEECSSSHHHHHHHHHHHH
T ss_pred EEC-CC---CCccceeccCccccccccccceEEECCCCHHHHHHHHHHHH
Confidence 753 22 3445666777 7899999999999999999887
No 180
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown function, aldolase superfamily, class I aldolase, KDPG aldolase domain; 1.84A {Oleispira antarctica} PDB: 3vcr_A
Probab=47.31 E-value=54 Score=31.85 Aligned_cols=86 Identities=12% Similarity=0.157 Sum_probs=52.9
Q ss_pred EEEECCHHHHHHHHHhc-CCCceEEEEecCCCCCCHHHHHHHHhccCCCCEEEEEcCCChHHHHhhhhcCCceEEeCCCC
Q 007940 44 VTTCGLARDALSLLRER-KDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIR 122 (584)
Q Consensus 44 V~~a~~~~eAL~~L~~~-~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~KP~~ 122 (584)
|....+.++++.+.+.. ..++++|=+.++ .-++++.++.++...+-.+|-.-.-.+.+.+.+++++||. ||.-|..
T Consensus 18 Vir~~~~~~a~~~a~al~~gGi~~iEvt~~--t~~a~~~I~~l~~~~p~~~IGAGTVlt~~~a~~ai~AGA~-fivsP~~ 94 (217)
T 3lab_A 18 VIVIDDLVHAIPMAKALVAGGVHLLEVTLR--TEAGLAAISAIKKAVPEAIVGAGTVCTADDFQKAIDAGAQ-FIVSPGL 94 (217)
T ss_dssp EECCSCGGGHHHHHHHHHHTTCCEEEEETT--STTHHHHHHHHHHHCTTSEEEEECCCSHHHHHHHHHHTCS-EEEESSC
T ss_pred EEEcCCHHHHHHHHHHHHHcCCCEEEEeCC--CccHHHHHHHHHHHCCCCeEeeccccCHHHHHHHHHcCCC-EEEeCCC
Confidence 33445555555544331 134565544444 4478999999876544456655555678999999999987 5555766
Q ss_pred HHHHHHHHHH
Q 007940 123 MKELRNIWQH 132 (584)
Q Consensus 123 ~~eL~~aI~~ 132 (584)
..++.+..++
T Consensus 95 ~~evi~~~~~ 104 (217)
T 3lab_A 95 TPELIEKAKQ 104 (217)
T ss_dssp CHHHHHHHHH
T ss_pred cHHHHHHHHH
Confidence 5665554433
No 181
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=46.56 E-value=55 Score=31.65 Aligned_cols=54 Identities=17% Similarity=0.180 Sum_probs=37.4
Q ss_pred ceEEEEecCCCCCCH-------HHHHHHHhccC-CCCEEEEEcCCChHHHHhhhhcCCceEEe
Q 007940 64 YDIVISDVNMPDMDG-------FKLLEHVGLEM-DLPVIMMSVDGETSRVMKGVQHGACDYLL 118 (584)
Q Consensus 64 pDLVIlDi~MPdmdG-------lELL~~Ir~~~-~iPVIvlSa~~d~~~~~~aL~~GAdDYL~ 118 (584)
+|.|++.-.-|+..| ++-+++++... +++ |.+.+--..+.+.++.++||+-++.
T Consensus 135 ~D~Vl~msv~pGf~Gq~f~~~~l~ki~~lr~~~~~~~-I~VdGGI~~~t~~~~~~aGAd~~Vv 196 (228)
T 3ovp_A 135 IDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSLD-IEVDGGVGPDTVHKCAEAGANMIVS 196 (228)
T ss_dssp CSEEEEESSCTTTCSCCCCGGGHHHHHHHHHHCTTCE-EEEESSCSTTTHHHHHHHTCCEEEE
T ss_pred CCeEEEeeecCCCCCcccCHHHHHHHHHHHHhcCCCC-EEEeCCcCHHHHHHHHHcCCCEEEE
Confidence 688887666677665 34455665432 444 4566666778899999999998775
No 182
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=46.34 E-value=21 Score=29.66 Aligned_cols=21 Identities=38% Similarity=0.556 Sum_probs=17.9
Q ss_pred cccccchhHHHHHHHHHHHhc
Q 007940 201 ARVVWSIDLHQKFVKAVNQIG 221 (584)
Q Consensus 201 ~rvvws~eLhqkFv~av~~iG 221 (584)
..-+|.+++.+.|++|+..+.
T Consensus 5 ~e~vW~~~lE~aF~eaL~~yp 25 (82)
T 2hzd_A 5 AEGVWSPDIEQSFQEALSIYP 25 (82)
T ss_dssp GSCCSCHHHHHHHHHHHHHSC
T ss_pred cCCcCCHHHHHHHHHHHHHcC
Confidence 345899999999999998874
No 183
>4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A
Probab=45.91 E-value=1.2e+02 Score=30.56 Aligned_cols=56 Identities=11% Similarity=0.057 Sum_probs=37.6
Q ss_pred HHHHHHHhccCCCCEEEEE--cCCChHHHHhhhhcCCceEEe-----CCCCHHHHHHHHHHHH
Q 007940 79 FKLLEHVGLEMDLPVIMMS--VDGETSRVMKGVQHGACDYLL-----KPIRMKELRNIWQHVF 134 (584)
Q Consensus 79 lELL~~Ir~~~~iPVIvlS--a~~d~~~~~~aL~~GAdDYL~-----KP~~~~eL~~aI~~vl 134 (584)
++++++++...++|||+++ +-...+.+.+++.+||+.+++ |--++....+.+...+
T Consensus 196 ~~ll~~i~~~~~iPVivvA~GGI~t~~dv~~~~~~GAdgVlVGsai~~a~dp~~~~~~l~~ai 258 (297)
T 4adt_A 196 IDLILLTRKLKRLPVVNFAAGGIATPADAAMCMQLGMDGVFVGSGIFESENPQKMASSIVMAV 258 (297)
T ss_dssp HHHHHHHHHHTSCSSEEEEESCCCSHHHHHHHHHTTCSCEEESHHHHTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCeEEEecCCCCCHHHHHHHHHcCCCEEEEhHHHHcCCCHHHHHHHHHHHH
Confidence 5677777666678887544 334788899999999999875 4444554444444444
No 184
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=45.89 E-value=1e+02 Score=29.27 Aligned_cols=78 Identities=19% Similarity=0.307 Sum_probs=50.6
Q ss_pred HHHHHHHHHhcCCCceEE-EEecCCCC-CC--HHHHHHHHhccCCCCEEEEEcCCChHHHHhhhhcCCceEEeC------
Q 007940 50 ARDALSLLRERKDGYDIV-ISDVNMPD-MD--GFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLK------ 119 (584)
Q Consensus 50 ~~eAL~~L~~~~~~pDLV-IlDi~MPd-md--GlELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~K------ 119 (584)
..+.+..+.+. .++.| +.++.-.+ .. .++++++++....+|||.-..-...+.+.++++.||+.+++=
T Consensus 153 ~~e~~~~~~~~--G~~~i~~~~~~~~g~~~g~~~~~~~~l~~~~~ipvia~GGI~~~~d~~~~~~~Gadgv~vGsal~~~ 230 (253)
T 1thf_D 153 LRDWVVEVEKR--GAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFR 230 (253)
T ss_dssp HHHHHHHHHHT--TCSEEEEEETTTTTSCSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTT
T ss_pred HHHHHHHHHHC--CCCEEEEEeccCCCCCCCCCHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCChHHHHHHHHHcC
Confidence 44544545443 35644 45654222 12 378899987667899998877777788889999999988743
Q ss_pred CCCHHHHHHH
Q 007940 120 PIRMKELRNI 129 (584)
Q Consensus 120 P~~~~eL~~a 129 (584)
|+...++.+.
T Consensus 231 ~~~~~~~~~~ 240 (253)
T 1thf_D 231 EIDVRELKEY 240 (253)
T ss_dssp CSCHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 4455554443
No 185
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=45.76 E-value=81 Score=27.23 Aligned_cols=92 Identities=12% Similarity=0.151 Sum_probs=42.3
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCH--HHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCCE
Q 007940 17 GLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLA--RDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGL-EMDLPV 93 (584)
Q Consensus 17 gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~--~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~-~~~iPV 93 (584)
|.+|.++|.++...+.++ ..|+.+.. +++ .+.++.+.- ...|+||+-+.-.. .-..++..++. .+.+.|
T Consensus 30 g~~v~vid~~~~~~~~~~----~~g~~~i~-gd~~~~~~l~~a~i--~~ad~vi~~~~~~~-~n~~~~~~a~~~~~~~~i 101 (140)
T 3fwz_A 30 DIPLVVIETSRTRVDELR----ERGVRAVL-GNAANEEIMQLAHL--ECAKWLILTIPNGY-EAGEIVASARAKNPDIEI 101 (140)
T ss_dssp TCCEEEEESCHHHHHHHH----HTTCEEEE-SCTTSHHHHHHTTG--GGCSEEEECCSCHH-HHHHHHHHHHHHCSSSEE
T ss_pred CCCEEEEECCHHHHHHHH----HcCCCEEE-CCCCCHHHHHhcCc--ccCCEEEEECCChH-HHHHHHHHHHHHCCCCeE
Confidence 456666666665444332 23554432 222 223332211 12677776542211 12223334433 355666
Q ss_pred EEEEcCCChHHHHhhhhcCCceEEe
Q 007940 94 IMMSVDGETSRVMKGVQHGACDYLL 118 (584)
Q Consensus 94 IvlSa~~d~~~~~~aL~~GAdDYL~ 118 (584)
|.... +.+......++||+..+.
T Consensus 102 iar~~--~~~~~~~l~~~G~d~vi~ 124 (140)
T 3fwz_A 102 IARAH--YDDEVAYITERGANQVVM 124 (140)
T ss_dssp EEEES--SHHHHHHHHHTTCSEEEE
T ss_pred EEEEC--CHHHHHHHHHCCCCEEEC
Confidence 65443 334445556788875553
No 186
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=45.47 E-value=1.2e+02 Score=25.82 Aligned_cols=43 Identities=19% Similarity=0.330 Sum_probs=35.3
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHh
Q 007940 17 GLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRE 59 (584)
Q Consensus 17 gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~ 59 (584)
++-|++..-+...++.+++++++.||.|.++.+..+.-..+.+
T Consensus 2 nivivvfstdeetlrkfkdiikkngfkvrtvrspqelkdsiee 44 (134)
T 2l69_A 2 NIVIVVFSTDEETLRKFKDIIKKNGFKVRTVRSPQELKDSIEE 44 (134)
T ss_dssp CEEEEECCCCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHH
T ss_pred cEEEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHHH
Confidence 3456666778888889999999999999999999887766655
No 187
>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*
Probab=45.46 E-value=70 Score=32.38 Aligned_cols=79 Identities=18% Similarity=0.187 Sum_probs=54.2
Q ss_pred HHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEecCCC-----CCCHHHHHHHHhccCCCCEEEEEcCCChHHHHhhhh
Q 007940 37 LKKCSYEVT-TCGLARDALSLLRERKDGYDIVISDVNMP-----DMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQ 110 (584)
Q Consensus 37 L~~~gy~V~-~a~~~~eAL~~L~~~~~~pDLVIlDi~MP-----dmdGlELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~ 110 (584)
++..+..+. .+.+.++|..+.+. .+|.|+++-.-. ....+++++.++...++|||+...-.+.+.+.+++.
T Consensus 106 l~~~g~~v~~~v~~~~~a~~~~~~---GaD~i~v~g~~~GG~~g~~~~~~ll~~i~~~~~iPViaaGGI~~~~~~~~al~ 182 (332)
T 2z6i_A 106 FHEAGIIVIPVVPSVALAKRMEKI---GADAVIAEGMEAGGHIGKLTTMTLVRQVATAISIPVIAAGGIADGEGAAAGFM 182 (332)
T ss_dssp HHHTTCEEEEEESSHHHHHHHHHT---TCSCEEEECTTSSEECCSSCHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHH
T ss_pred HHHcCCeEEEEeCCHHHHHHHHHc---CCCEEEEECCCCCCCCCCccHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHH
Confidence 344565554 45666666554432 378888863211 234678888887667899998877777889999999
Q ss_pred cCCceEEe
Q 007940 111 HGACDYLL 118 (584)
Q Consensus 111 ~GAdDYL~ 118 (584)
+||+....
T Consensus 183 ~GAdgV~v 190 (332)
T 2z6i_A 183 LGAEAVQV 190 (332)
T ss_dssp TTCSEEEE
T ss_pred cCCCEEEe
Confidence 99987653
No 188
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=45.41 E-value=79 Score=31.60 Aligned_cols=86 Identities=10% Similarity=0.032 Sum_probs=56.9
Q ss_pred HHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEecCC-C--CCCHHHHHHHHhc-c-CCCCEEEEEcCCCh
Q 007940 29 WLKILEKMLKKCSYEVT-TCGLARDALSLLRERKDGYDIVISDVNM-P--DMDGFKLLEHVGL-E-MDLPVIMMSVDGET 102 (584)
Q Consensus 29 ~r~~L~~lL~~~gy~V~-~a~~~~eAL~~L~~~~~~pDLVIlDi~M-P--dmdGlELL~~Ir~-~-~~iPVIvlSa~~d~ 102 (584)
..+.+....+..|..+. .+.+.+|+..++.. ++|+|=+.-.- - ..| ++...++.. . ..+|+|.-++-...
T Consensus 157 ~l~~l~~~a~~lGl~~lvevh~~eEl~~A~~~---ga~iIGinnr~l~t~~~d-l~~~~~L~~~ip~~~~vIaesGI~t~ 232 (272)
T 3tsm_A 157 LAKELEDTAFALGMDALIEVHDEAEMERALKL---SSRLLGVNNRNLRSFEVN-LAVSERLAKMAPSDRLLVGESGIFTH 232 (272)
T ss_dssp HHHHHHHHHHHTTCEEEEEECSHHHHHHHTTS---CCSEEEEECBCTTTCCBC-THHHHHHHHHSCTTSEEEEESSCCSH
T ss_pred HHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhc---CCCEEEECCCCCccCCCC-hHHHHHHHHhCCCCCcEEEECCCCCH
Confidence 34455555667787755 67888887666542 37877665321 1 112 344444422 2 36788888888899
Q ss_pred HHHHhhhhcCCceEEe
Q 007940 103 SRVMKGVQHGACDYLL 118 (584)
Q Consensus 103 ~~~~~aL~~GAdDYL~ 118 (584)
+.+.++.++||+.+++
T Consensus 233 edv~~l~~~Ga~gvLV 248 (272)
T 3tsm_A 233 EDCLRLEKSGIGTFLI 248 (272)
T ss_dssp HHHHHHHTTTCCEEEE
T ss_pred HHHHHHHHcCCCEEEE
Confidence 9999999999999986
No 189
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=45.10 E-value=1.8e+02 Score=28.67 Aligned_cols=100 Identities=13% Similarity=0.141 Sum_probs=53.5
Q ss_pred CEEEEE-eCCHHHHHHHHHHHHhCCCeEEEEC--CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCCEE
Q 007940 18 LRVLVV-DDDLAWLKILEKMLKKCSYEVTTCG--LARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVI 94 (584)
Q Consensus 18 mrVLIV-DDd~~~r~~L~~lL~~~gy~V~~a~--~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVI 94 (584)
++++++ .+.+..++.+++.++... .|...+ ...+...++.. .|++++. . .|+ +++.+ ...+|||
T Consensus 231 ~~lv~~~g~~~~~~~~l~~~~~~~~-~v~~~g~~g~~~~~~~~~~----ad~~v~~----S-~g~-~lEA~--a~G~PvI 297 (376)
T 1v4v_A 231 LTFVYPVHLNPVVREAVFPVLKGVR-NFVLLDPLEYGSMAALMRA----SLLLVTD----S-GGL-QEEGA--ALGVPVV 297 (376)
T ss_dssp SEEEEECCSCHHHHHHHHHHHTTCT-TEEEECCCCHHHHHHHHHT----EEEEEES----C-HHH-HHHHH--HTTCCEE
T ss_pred eEEEEECCCCHHHHHHHHHHhccCC-CEEEECCCCHHHHHHHHHh----CcEEEEC----C-cCH-HHHHH--HcCCCEE
Confidence 455554 445544555555543211 344332 12233344432 5677654 2 354 44554 3578998
Q ss_pred EEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHH
Q 007940 95 MMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFR 135 (584)
Q Consensus 95 vlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlr 135 (584)
+....+..... ++.| ..++.. .+.++|.+++.+++.
T Consensus 298 ~~~~~~~~~~~---~~~g-~g~lv~-~d~~~la~~i~~ll~ 333 (376)
T 1v4v_A 298 VLRNVTERPEG---LKAG-ILKLAG-TDPEGVYRVVKGLLE 333 (376)
T ss_dssp ECSSSCSCHHH---HHHT-SEEECC-SCHHHHHHHHHHHHT
T ss_pred eccCCCcchhh---hcCC-ceEECC-CCHHHHHHHHHHHHh
Confidence 75433333333 3445 467774 489999999988874
No 190
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=44.73 E-value=95 Score=28.45 Aligned_cols=103 Identities=21% Similarity=0.378 Sum_probs=61.0
Q ss_pred CHHHHHHHHHHHHhCCCeEEEECCH---------------H----HHHHHHHhcCCCceEEEEecCCCCC-CHHHHHHHH
Q 007940 26 DLAWLKILEKMLKKCSYEVTTCGLA---------------R----DALSLLRERKDGYDIVISDVNMPDM-DGFKLLEHV 85 (584)
Q Consensus 26 d~~~r~~L~~lL~~~gy~V~~a~~~---------------~----eAL~~L~~~~~~pDLVIlDi~MPdm-dGlELL~~I 85 (584)
+....+.+.+.|++.| .|....-+ . .-++.++. .|+||..+.-|+. .++|+.-..
T Consensus 17 ~~~~~~~i~~~L~~~G-~Vl~~hv~~~~l~~~g~~~~~~~~~i~~~d~~~i~~----aD~vvA~l~~~d~Gt~~EiG~A~ 91 (152)
T 4fyk_A 17 DQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQNLNWLQQ----ADVVVAEVTQPSLGVGYELGRAV 91 (152)
T ss_dssp THHHHHHHHHHHTTTS-EECCCC-------------CCCHHHHHHHHHHHHHH----CSEEEEECSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC-cccccccCchhhhhccccccCCHHHHHHHHHHHHHH----CCEEEEeCCCCCCCHHHHHHHHH
Confidence 4456678888998888 55321111 1 11233333 6899998875542 356665444
Q ss_pred hccCCCCEEEEEcCCChHHHHhhhhcCC---ceEEeCCCCHHHHHHHHHHHHHh
Q 007940 86 GLEMDLPVIMMSVDGETSRVMKGVQHGA---CDYLLKPIRMKELRNIWQHVFRK 136 (584)
Q Consensus 86 r~~~~iPVIvlSa~~d~~~~~~aL~~GA---dDYL~KP~~~~eL~~aI~~vlrr 136 (584)
....||+++.... ......++-.|. ..|..+.+...+|..++.+.+..
T Consensus 92 --algkPV~~l~~~~-~~~~ls~mi~G~~~~~~~~~~~Y~~~el~~il~~f~~~ 142 (152)
T 4fyk_A 92 --ALGKPILCLFRPQ-SGRVLSAMIRGAADGSRFQVWDYAEGEVETMLDRYFEA 142 (152)
T ss_dssp --HTTCCEEEEECGG-GSCCCCHHHHHHCCSSSEEEEECCTTCHHHHHHHHHC-
T ss_pred --HcCCeEEEEEeCC-ccchhHHHHcCCCCCCeEEEEEecHHHHHHHHHHHHHh
Confidence 3578999987532 112233333344 34888888888888888877644
No 191
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=44.45 E-value=1.5e+02 Score=25.36 Aligned_cols=106 Identities=17% Similarity=0.249 Sum_probs=66.7
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECC--HHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCC-CE
Q 007940 17 GLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGL--ARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDL-PV 93 (584)
Q Consensus 17 gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~--~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~i-PV 93 (584)
+++++|+-+.+. ...++++++..+..+.. +. ..+..+.+.. .|++++--. .+.-|+.+++.+. ..+ ||
T Consensus 32 ~~~l~i~G~g~~-~~~~~~~~~~~~~~v~~-g~~~~~~~~~~~~~----adv~v~ps~-~e~~~~~~~Eama--~G~vPv 102 (166)
T 3qhp_A 32 DIVLLLKGKGPD-EKKIKLLAQKLGVKAEF-GFVNSNELLEILKT----CTLYVHAAN-VESEAIACLEAIS--VGIVPV 102 (166)
T ss_dssp GEEEEEECCSTT-HHHHHHHHHHHTCEEEC-CCCCHHHHHHHHTT----CSEEEECCC-SCCCCHHHHHHHH--TTCCEE
T ss_pred CeEEEEEeCCcc-HHHHHHHHHHcCCeEEE-eecCHHHHHHHHHh----CCEEEECCc-ccCccHHHHHHHh--cCCCcE
Confidence 578888887553 46777777777765554 43 3555555543 578887443 3344667777663 455 88
Q ss_pred EEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 007940 94 IMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 136 (584)
Q Consensus 94 IvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrr 136 (584)
|..+..+... +.+..|. ++..|-+.++|.+++.+++..
T Consensus 103 i~~~~~~~~~---~~~~~~~--~~~~~~~~~~l~~~i~~l~~~ 140 (166)
T 3qhp_A 103 IANSPLSATR---QFALDER--SLFEPNNAKDLSAKIDWWLEN 140 (166)
T ss_dssp EECCTTCGGG---GGCSSGG--GEECTTCHHHHHHHHHHHHHC
T ss_pred EeeCCCCchh---hhccCCc--eEEcCCCHHHHHHHHHHHHhC
Confidence 8633222222 3333333 388899999999999988753
No 192
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=44.16 E-value=22 Score=35.68 Aligned_cols=53 Identities=13% Similarity=0.227 Sum_probs=38.3
Q ss_pred HHHHHHHhcc-CCCCEEEEEc------CCChHHHHhhhhcCCceEEeCCCCHHHHHHHHH
Q 007940 79 FKLLEHVGLE-MDLPVIMMSV------DGETSRVMKGVQHGACDYLLKPIRMKELRNIWQ 131 (584)
Q Consensus 79 lELL~~Ir~~-~~iPVIvlSa------~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~ 131 (584)
+++++.+|.. ..+|+|+|+= .+-...+.++.++|+++.|+--+..++......
T Consensus 85 ~~~v~~~r~~~~~~Pivlm~Y~n~v~~~g~~~f~~~~~~aGvdGvIipDlp~ee~~~~~~ 144 (271)
T 3nav_A 85 FELIAQIRARNPETPIGLLMYANLVYARGIDDFYQRCQKAGVDSVLIADVPTNESQPFVA 144 (271)
T ss_dssp HHHHHHHHHHCTTSCEEEEECHHHHHHTCHHHHHHHHHHHTCCEEEETTSCGGGCHHHHH
T ss_pred HHHHHHHHhcCCCCCEEEEecCcHHHHHhHHHHHHHHHHCCCCEEEECCCCHHHHHHHHH
Confidence 5667777765 7899999972 244566888999999999987666666444333
No 193
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=44.08 E-value=94 Score=29.48 Aligned_cols=62 Identities=18% Similarity=0.203 Sum_probs=44.3
Q ss_pred CCCEEEEEe------CCHHHHHHHHHHHHhCCCeEEEE----CCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHH
Q 007940 16 AGLRVLVVD------DDLAWLKILEKMLKKCSYEVTTC----GLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHV 85 (584)
Q Consensus 16 ~gmrVLIVD------Dd~~~r~~L~~lL~~~gy~V~~a----~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~I 85 (584)
.+-||++|+ |.....+.+.+.|++.|+++... .+.++..+.+.+ .|.|++ |+.+-+.+++.+
T Consensus 26 ~~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~~~~~~~~~~l~~----ad~I~l----~GG~~~~l~~~L 97 (206)
T 3l4e_A 26 QGKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIATESLGEITTKLRK----NDFIYV----TGGNTFFLLQEL 97 (206)
T ss_dssp TTCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTTSCHHHHHHHHHH----SSEEEE----CCSCHHHHHHHH
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCChHHHHHHHHh----CCEEEE----CCCCHHHHHHHH
Confidence 356899997 44457778889999999988776 367777777765 467775 676666655544
No 194
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=43.70 E-value=95 Score=29.07 Aligned_cols=78 Identities=14% Similarity=0.195 Sum_probs=48.8
Q ss_pred HHHHHHHHHhcCCCceEEEE-ecCCCCC---CHHHHHHHHhccCCCCEEEEEcCCChHHHHhhhhcCCceEEe------C
Q 007940 50 ARDALSLLRERKDGYDIVIS-DVNMPDM---DGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLL------K 119 (584)
Q Consensus 50 ~~eAL~~L~~~~~~pDLVIl-Di~MPdm---dGlELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~------K 119 (584)
..+.+..+.+.. .|.|++ .+.-.++ -.++.++.++...++|||+-.+-...+.+.+++++||+.+++ .
T Consensus 156 ~~e~~~~~~~~G--~d~i~~~~~~~~g~~~~~~~~~i~~l~~~~~~pvia~GGi~~~~~~~~~~~~Ga~~v~vgsal~~~ 233 (253)
T 1h5y_A 156 AVKWAKEVEELG--AGEILLTSIDRDGTGLGYDVELIRRVADSVRIPVIASGGAGRVEHFYEAAAAGADAVLAASLFHFR 233 (253)
T ss_dssp HHHHHHHHHHHT--CSEEEEEETTTTTTCSCCCHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTT
T ss_pred HHHHHHHHHhCC--CCEEEEecccCCCCcCcCCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCCcHHHHHHHHHcC
Confidence 445445444432 666654 4442111 146778888666689999877766678888899999998864 3
Q ss_pred CCCHHHHHHH
Q 007940 120 PIRMKELRNI 129 (584)
Q Consensus 120 P~~~~eL~~a 129 (584)
+....++.+.
T Consensus 234 ~~~~~~~~~~ 243 (253)
T 1h5y_A 234 VLSIAQVKRY 243 (253)
T ss_dssp SSCHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 4455544443
No 195
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=43.67 E-value=62 Score=31.23 Aligned_cols=69 Identities=19% Similarity=0.261 Sum_probs=47.0
Q ss_pred CHHHHHHHHHhcCCCce-EEEEecCCCCC---CHHHHHHHHhccCCCCEEEEEcCCChHHHHhhhhcCCceEEeC
Q 007940 49 LARDALSLLRERKDGYD-IVISDVNMPDM---DGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLK 119 (584)
Q Consensus 49 ~~~eAL~~L~~~~~~pD-LVIlDi~MPdm---dGlELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~K 119 (584)
+..+..+.+.+.. .| +.+.|....+. .-+++++.++....+|||+...-.+.+.+.+++..||+..++=
T Consensus 31 ~~~~~a~~~~~~G--a~~i~v~d~~~~~~~~g~~~~~i~~i~~~~~iPvi~~ggi~~~~~i~~~~~~Gad~v~lg 103 (266)
T 2w6r_A 31 LLRDWVVEVEKRG--AGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADKALAA 103 (266)
T ss_dssp EHHHHHHHHHHHT--CSEEEEEETTTSSCSSCCCHHHHHHHGGGCCSCEEEESCCCSTHHHHHHHHHTCSEEECC
T ss_pred CHHHHHHHHHHCC--CCEEEEEecCcccCCCcccHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCcHhhhh
Confidence 4455555555432 44 44456543321 1278888888777899998877677788889999999987764
No 196
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=41.85 E-value=80 Score=30.92 Aligned_cols=105 Identities=20% Similarity=0.342 Sum_probs=59.9
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCCEEE
Q 007940 18 LRVLVVDDDLAWLKILEKMLKKCSY--EVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIM 95 (584)
Q Consensus 18 mrVLIVDDd~~~r~~L~~lL~~~gy--~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVIv 95 (584)
++++|+-+.+ .+.+++++++.+. .|...+...+..+.+.. .|++++--.. +.-|..+++.+. ..+|||.
T Consensus 229 ~~l~i~G~g~--~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----ad~~v~ps~~-e~~~~~~~Ea~a--~G~Pvi~ 299 (374)
T 2iw1_A 229 TLLFVVGQDK--PRKFEALAEKLGVRSNVHFFSGRNDVSELMAA----ADLLLHPAYQ-EAAGIVLLEAIT--AGLPVLT 299 (374)
T ss_dssp EEEEEESSSC--CHHHHHHHHHHTCGGGEEEESCCSCHHHHHHH----CSEEEECCSC-CSSCHHHHHHHH--HTCCEEE
T ss_pred eEEEEEcCCC--HHHHHHHHHHcCCCCcEEECCCcccHHHHHHh----cCEEEecccc-CCcccHHHHHHH--CCCCEEE
Confidence 4566665533 2344444444331 34444443344444443 4666664322 333566666653 4688886
Q ss_pred EEcCCChHHHHhhhhcCCceEEeC-CCCHHHHHHHHHHHHH
Q 007940 96 MSVDGETSRVMKGVQHGACDYLLK-PIRMKELRNIWQHVFR 135 (584)
Q Consensus 96 lSa~~d~~~~~~aL~~GAdDYL~K-P~~~~eL~~aI~~vlr 135 (584)
....+. .+.+..|..+++.. |.+.++|.+++.+++.
T Consensus 300 ~~~~~~----~e~i~~~~~g~~~~~~~~~~~l~~~i~~l~~ 336 (374)
T 2iw1_A 300 TAVCGY----AHYIADANCGTVIAEPFSQEQLNEVLRKALT 336 (374)
T ss_dssp ETTSTT----THHHHHHTCEEEECSSCCHHHHHHHHHHHHH
T ss_pred ecCCCc----hhhhccCCceEEeCCCCCHHHHHHHHHHHHc
Confidence 432222 23455567889987 9999999999998875
No 197
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=41.85 E-value=33 Score=33.41 Aligned_cols=69 Identities=19% Similarity=0.344 Sum_probs=44.0
Q ss_pred CceEEEEecCCC--CCC--------------------HHHHHHHHhccCCCCEEEEEcCCChH---HHHhhhhcCCceEE
Q 007940 63 GYDIVISDVNMP--DMD--------------------GFKLLEHVGLEMDLPVIMMSVDGETS---RVMKGVQHGACDYL 117 (584)
Q Consensus 63 ~pDLVIlDi~MP--dmd--------------------GlELL~~Ir~~~~iPVIvlSa~~d~~---~~~~aL~~GAdDYL 117 (584)
+.|+|-+++-.. -+| ++++++.++...++|++++. +.+.. .+..+.++||+.++
T Consensus 45 Gad~ielg~p~~dp~~dg~~i~~a~~~al~~g~~~~~~~~~i~~ir~~~~~Pv~~m~-~~~~~~~~~~~~a~~aGadgv~ 123 (262)
T 1rd5_A 45 GADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAVLEMLREVTPELSCPVVLLS-YYKPIMFRSLAKMKEAGVHGLI 123 (262)
T ss_dssp TCSSEEEECCCSCCTTSCHHHHHHHHHHHTTTCCHHHHHHHHHHHGGGCSSCEEEEC-CSHHHHSCCTHHHHHTTCCEEE
T ss_pred CCCEEEECCCCCCcccCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCEEEEe-cCcHHHHHHHHHHHHcCCCEEE
Confidence 488888887443 233 46777888777789998875 22211 12238899999999
Q ss_pred eCCCCHHHHHHHHHH
Q 007940 118 LKPIRMKELRNIWQH 132 (584)
Q Consensus 118 ~KP~~~~eL~~aI~~ 132 (584)
+-....+++.+.+..
T Consensus 124 v~d~~~~~~~~~~~~ 138 (262)
T 1rd5_A 124 VPDLPYVAAHSLWSE 138 (262)
T ss_dssp CTTCBTTTHHHHHHH
T ss_pred EcCCChhhHHHHHHH
Confidence 865555555444443
No 198
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=40.92 E-value=1.1e+02 Score=28.11 Aligned_cols=67 Identities=21% Similarity=0.370 Sum_probs=47.2
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCC--eE-EEECCHHHHHHHHHhcC-CCceEEEEecCCCCCCHHHHHHHH
Q 007940 17 GLRVLVVDDDLAWLKILEKMLKKCSY--EV-TTCGLARDALSLLRERK-DGYDIVISDVNMPDMDGFKLLEHV 85 (584)
Q Consensus 17 gmrVLIVDDd~~~r~~L~~lL~~~gy--~V-~~a~~~~eAL~~L~~~~-~~pDLVIlDi~MPdmdGlELL~~I 85 (584)
+.+|..||-++...+..++.++..|. .+ ....++.+.+..+.... ..||+|++|...+ .-..+++.+
T Consensus 83 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v~~d~~~~--~~~~~l~~~ 153 (223)
T 3duw_A 83 GGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDFIFIDADKQ--NNPAYFEWA 153 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSEEEECSCGG--GHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCEEEEcCCcH--HHHHHHHHH
Confidence 56999999999999999999987774 23 35677877776655422 3499999986532 223455554
No 199
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=40.73 E-value=1.5e+02 Score=31.53 Aligned_cols=88 Identities=16% Similarity=0.217 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHhC-CCeEE--EECCHHHHHHHHHhcCCCceEEEEecCC---------C--CCCHHHHHHHHh---ccCC
Q 007940 28 AWLKILEKMLKKC-SYEVT--TCGLARDALSLLRERKDGYDIVISDVNM---------P--DMDGFKLLEHVG---LEMD 90 (584)
Q Consensus 28 ~~r~~L~~lL~~~-gy~V~--~a~~~~eAL~~L~~~~~~pDLVIlDi~M---------P--dmdGlELL~~Ir---~~~~ 90 (584)
...+.++.+-+.. +..|. .+.+.++|..+.+ . ++|.|.+...- . +...++++..+. ....
T Consensus 264 ~~~e~i~~i~~~~p~~pvi~g~~~t~e~a~~l~~-~--G~d~I~v~~~~G~~~~~~~~~~~g~p~~~~l~~v~~~~~~~~ 340 (494)
T 1vrd_A 264 RVIETLEMIKADYPDLPVVAGNVATPEGTEALIK-A--GADAVKVGVGPGSICTTRVVAGVGVPQLTAVMECSEVARKYD 340 (494)
T ss_dssp HHHHHHHHHHHHCTTSCEEEEEECSHHHHHHHHH-T--TCSEEEECSSCSTTCHHHHHHCCCCCHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHCCCceEEeCCcCCHHHHHHHHH-c--CCCEEEEcCCCCccccccccCCCCccHHHHHHHHHHHHhhcC
Confidence 4556666666655 34332 4566777755543 2 37888874321 0 123445554443 2247
Q ss_pred CCEEEEEcCCChHHHHhhhhcCCceEEe
Q 007940 91 LPVIMMSVDGETSRVMKGVQHGACDYLL 118 (584)
Q Consensus 91 iPVIvlSa~~d~~~~~~aL~~GAdDYL~ 118 (584)
+|||.-..-.+...+.+++.+||+....
T Consensus 341 ipvia~GGI~~~~di~kala~GAd~V~i 368 (494)
T 1vrd_A 341 VPIIADGGIRYSGDIVKALAAGAESVMV 368 (494)
T ss_dssp CCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred CCEEEECCcCCHHHHHHHHHcCCCEEEE
Confidence 9999887778889999999999987654
No 200
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=40.58 E-value=1.1e+02 Score=28.91 Aligned_cols=56 Identities=20% Similarity=0.162 Sum_probs=42.5
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCC--eE-EEECCHHHHHHHHHhc---CCCceEEEEecC
Q 007940 17 GLRVLVVDDDLAWLKILEKMLKKCSY--EV-TTCGLARDALSLLRER---KDGYDIVISDVN 72 (584)
Q Consensus 17 gmrVLIVDDd~~~r~~L~~lL~~~gy--~V-~~a~~~~eAL~~L~~~---~~~pDLVIlDi~ 72 (584)
+-+|..||-++...+..++.++..|. .+ ...+++.+.+..+... ...||+|++|..
T Consensus 95 ~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~I~~d~~ 156 (237)
T 3c3y_A 95 DGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYDFGFVDAD 156 (237)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCEEEEEECSC
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCcCEEEECCc
Confidence 56999999999999999999998875 24 3567777776655321 235999999964
No 201
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=40.51 E-value=1.9e+02 Score=28.18 Aligned_cols=59 Identities=15% Similarity=0.234 Sum_probs=38.4
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhccCCCCEEEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHH
Q 007940 64 YDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFR 135 (584)
Q Consensus 64 pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlr 135 (584)
.|++++.- |.-+++.+. ..+|||.....+.. .+.++.| .+++..+ +.++|.+++.+++.
T Consensus 283 ad~~v~~s------g~~~lEA~a--~G~Pvi~~~~~~~~---~e~v~~g-~g~~v~~-d~~~la~~i~~ll~ 341 (375)
T 3beo_A 283 SYLMLTDS------GGVQEEAPS--LGVPVLVLRDTTER---PEGIEAG-TLKLAGT-DEETIFSLADELLS 341 (375)
T ss_dssp CSEEEECC------HHHHHHHHH--HTCCEEECSSCCSC---HHHHHTT-SEEECCS-CHHHHHHHHHHHHH
T ss_pred CcEEEECC------CChHHHHHh--cCCCEEEecCCCCC---ceeecCC-ceEEcCC-CHHHHHHHHHHHHh
Confidence 46776542 444555542 46898865221332 3346677 8888877 99999999998875
No 202
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=40.28 E-value=1.1e+02 Score=34.08 Aligned_cols=102 Identities=14% Similarity=0.190 Sum_probs=64.7
Q ss_pred CCEEEEE----eCCHHHHHHHHHHHHhCCCeEEEEC---CHHHHHHHHHhcCCCceEEEEecCCCC-CC-HHHHHHHHhc
Q 007940 17 GLRVLVV----DDDLAWLKILEKMLKKCSYEVTTCG---LARDALSLLRERKDGYDIVISDVNMPD-MD-GFKLLEHVGL 87 (584)
Q Consensus 17 gmrVLIV----DDd~~~r~~L~~lL~~~gy~V~~a~---~~~eAL~~L~~~~~~pDLVIlDi~MPd-md-GlELL~~Ir~ 87 (584)
+.+||+. |-|..=..++..+|+..||+|+-.+ ..++.++.+.+.. +|+|.+-..|.. +. --++++.++.
T Consensus 98 ~~kVLlatv~GD~HdiG~~iva~~L~~~G~eVi~LG~~vP~e~iv~aa~~~~--~diVgLS~l~t~~~~~m~~~i~~Lr~ 175 (579)
T 3bul_A 98 NGKMVIATVKGDVHDIGKNIVGVVLQCNNYEIVDLGVMVPAEKILRTAKEVN--ADLIGLSGLITPSLDEMVNVAKEMER 175 (579)
T ss_dssp SCEEEEEEBTTCCCCHHHHHHHHHHHTTTCEEEECCSSBCHHHHHHHHHHHT--CSEEEEECCSTHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEEecCCCCHHHHHHHHHHHHH
Confidence 4588888 6677778889999999999998543 3577777777755 999999887743 22 1234555543
Q ss_pred c-CCCCEEEEEcCCChHHHHhh---hhcCCceEEeCC
Q 007940 88 E-MDLPVIMMSVDGETSRVMKG---VQHGACDYLLKP 120 (584)
Q Consensus 88 ~-~~iPVIvlSa~~d~~~~~~a---L~~GAdDYL~KP 120 (584)
. .++||++=-+....+....- .-.||+.|..-.
T Consensus 176 ~g~~i~ViVGGa~~~~~~a~~~i~p~~~GAD~ya~DA 212 (579)
T 3bul_A 176 QGFTIPLLIGGATTSKAHTAVKIEQNYSGPTVYVQNA 212 (579)
T ss_dssp TTCCSCEEEESTTCCHHHHHHHTGGGCSSCEEECCSH
T ss_pred cCCCCeEEEEccccchhhhhhhhhhcccCCeEEECCH
Confidence 3 46777654333333332111 122888776543
No 203
>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*
Probab=40.06 E-value=2.8e+02 Score=27.77 Aligned_cols=107 Identities=12% Similarity=0.041 Sum_probs=61.7
Q ss_pred CCCCEEEEEeCCHHHHH-HHHHHHHhCCCeEE-EEC-CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCC
Q 007940 15 PAGLRVLVVDDDLAWLK-ILEKMLKKCSYEVT-TCG-LARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDL 91 (584)
Q Consensus 15 p~gmrVLIVDDd~~~r~-~L~~lL~~~gy~V~-~a~-~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~i 91 (584)
.+.+||.||---..-+. .+..+.+..+++++ +++ +...+.+..++.. ...+ .|+ +.+-....+
T Consensus 25 m~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g--~~~~-~~~-----------~~ll~~~~~ 90 (350)
T 3rc1_A 25 ANPIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTERFG--GEPV-EGY-----------PALLERDDV 90 (350)
T ss_dssp -CCEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHHHC--SEEE-ESH-----------HHHHTCTTC
T ss_pred CCceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHHcC--CCCc-CCH-----------HHHhcCCCC
Confidence 34589999998877663 44444443367765 333 3333433333321 2222 332 232223445
Q ss_pred CEEEEEcC--CChHHHHhhhhcCCceEEeCCC--CHHHHHHHHHHHHH
Q 007940 92 PVIMMSVD--GETSRVMKGVQHGACDYLLKPI--RMKELRNIWQHVFR 135 (584)
Q Consensus 92 PVIvlSa~--~d~~~~~~aL~~GAdDYL~KP~--~~~eL~~aI~~vlr 135 (584)
-+|+++.. ...+.+..|+++|..=++-||+ +.++..+.++.+-+
T Consensus 91 D~V~i~tp~~~h~~~~~~al~aGk~Vl~EKP~a~~~~ea~~l~~~a~~ 138 (350)
T 3rc1_A 91 DAVYVPLPAVLHAEWIDRALRAGKHVLAEKPLTTDRPQAERLFAVARE 138 (350)
T ss_dssp SEEEECCCGGGHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHH
T ss_pred CEEEECCCcHHHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHH
Confidence 56666543 4557788999999998999997 46666666655443
No 204
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5
Probab=40.03 E-value=98 Score=29.24 Aligned_cols=85 Identities=15% Similarity=0.153 Sum_probs=55.2
Q ss_pred HHHHHHHHHhC-CCeEE-EECCHHHHHHHHHhcCCCceEE---EEecCCCC-----CCHHHHHHHHhccCCCCEEEEEcC
Q 007940 30 LKILEKMLKKC-SYEVT-TCGLARDALSLLRERKDGYDIV---ISDVNMPD-----MDGFKLLEHVGLEMDLPVIMMSVD 99 (584)
Q Consensus 30 r~~L~~lL~~~-gy~V~-~a~~~~eAL~~L~~~~~~pDLV---IlDi~MPd-----mdGlELL~~Ir~~~~iPVIvlSa~ 99 (584)
.+.++.+-+.. +..+. .+.+..++..+... ..|+| ++.+. |+ ...+++++.++.. ++||+...+-
T Consensus 121 ~~~i~~i~~~~~~~~v~~~~~t~~ea~~a~~~---Gad~i~~~v~g~~-~~~~~~~~~~~~~i~~~~~~-~ipvia~GGI 195 (234)
T 1yxy_A 121 ASFIRQVKEKYPNQLLMADISTFDEGLVAHQA---GIDFVGTTLSGYT-PYSRQEAGPDVALIEALCKA-GIAVIAEGKI 195 (234)
T ss_dssp HHHHHHHHHHCTTCEEEEECSSHHHHHHHHHT---TCSEEECTTTTSS-TTSCCSSSCCHHHHHHHHHT-TCCEEEESCC
T ss_pred HHHHHHHHHhCCCCeEEEeCCCHHHHHHHHHc---CCCEEeeeccccC-CCCcCCCCCCHHHHHHHHhC-CCCEEEECCC
Confidence 44444444443 44443 55677777666553 37887 33321 21 1246788888666 8999987777
Q ss_pred CChHHHHhhhhcCCceEEeC
Q 007940 100 GETSRVMKGVQHGACDYLLK 119 (584)
Q Consensus 100 ~d~~~~~~aL~~GAdDYL~K 119 (584)
.+.+.+.+++++||+.+++=
T Consensus 196 ~s~~~~~~~~~~Gad~v~vG 215 (234)
T 1yxy_A 196 HSPEEAKKINDLGVAGIVVG 215 (234)
T ss_dssp CSHHHHHHHHTTCCSEEEEC
T ss_pred CCHHHHHHHHHCCCCEEEEc
Confidence 77899999999999988653
No 205
>3qz6_A HPCH/HPAI aldolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.00A {Desulfitobacterium hafniense} SCOP: c.1.12.0
Probab=39.48 E-value=1.6e+02 Score=29.00 Aligned_cols=99 Identities=16% Similarity=0.150 Sum_probs=59.5
Q ss_pred HHHHHHhCCCeEE--EEC-CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc--cCCCCEEEEEcCCChHHHHh
Q 007940 33 LEKMLKKCSYEVT--TCG-LARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGL--EMDLPVIMMSVDGETSRVMK 107 (584)
Q Consensus 33 L~~lL~~~gy~V~--~a~-~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~--~~~iPVIvlSa~~d~~~~~~ 107 (584)
+++.|+.-...+. ... ...+.++.+... ++|.||+|++--..+.-++...++. ....++++=....+...+..
T Consensus 6 ~k~~l~~g~~~~g~~~~~~~~p~~~e~a~~~--g~D~vilDlEhav~~~~k~~~~l~a~~~~~~~~~VRVn~~~~~di~~ 83 (261)
T 3qz6_A 6 LKKKLSAGKSVVGTMLNLVYNPDIVRIYAEA--GLDYFIVDCEHAAYTFREINHLVSVAKNAGVSVLVRIPQVDRAHVQR 83 (261)
T ss_dssp HHHHHHTTCCEEEEEESSCCCTTHHHHHHHT--TCSEEEEESSSSCCCHHHHHHHHHHHHHHTCEEEEECSSCCHHHHHH
T ss_pred HHHHHHCCCCEEEEEEecCCCHHHHHHHhcC--CcCEEEEeccCCCCCHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHH
Confidence 4555654322222 222 334556666553 4999999998766666555555532 12344444334456678889
Q ss_pred hhhcCCceEE-eCCCCHHHHHHHHHHH
Q 007940 108 GVQHGACDYL-LKPIRMKELRNIWQHV 133 (584)
Q Consensus 108 aL~~GAdDYL-~KP~~~~eL~~aI~~v 133 (584)
+++.|++..+ .|--+.+++..+++.+
T Consensus 84 ~ld~G~~gI~lP~v~saed~~~~~~~~ 110 (261)
T 3qz6_A 84 LLDIGAEGFMIPGVQSAETMRETVRLA 110 (261)
T ss_dssp HHHHTCCEEEETTCCSHHHHHHHHHHH
T ss_pred HHhcCCCEEEECCcCCHHHHHHHHHHh
Confidence 9999998864 4445677777665544
No 206
>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}
Probab=39.17 E-value=37 Score=32.44 Aligned_cols=62 Identities=15% Similarity=0.278 Sum_probs=46.0
Q ss_pred HHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCCEEEEEcCCChHHHHhhhhcCCceEEe
Q 007940 51 RDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLL 118 (584)
Q Consensus 51 ~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~ 118 (584)
+-+++.+.+.+ ||+| . .||+.-- +++++++....+|||+=---.+.+.+.+|+++||+...+
T Consensus 117 ~~~~~~i~~~~--PD~i--E-iLPGi~p-~iI~~i~~~~~~PiIaGGlI~~~edv~~al~aGA~aVsT 178 (192)
T 3kts_A 117 NKGVALIQKVQ--PDCI--E-LLPGIIP-EQVQKMTQKLHIPVIAGGLIETSEQVNQVIASGAIAVTT 178 (192)
T ss_dssp HHHHHHHHHHC--CSEE--E-EECTTCH-HHHHHHHHHHCCCEEEESSCCSHHHHHHHHTTTEEEEEE
T ss_pred HHHHHHHhhcC--CCEE--E-ECCchhH-HHHHHHHHhcCCCEEEECCcCCHHHHHHHHHcCCeEEEe
Confidence 34666676655 8977 3 3687543 788888777789998654457889999999999987654
No 207
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=38.71 E-value=1.1e+02 Score=29.18 Aligned_cols=69 Identities=14% Similarity=0.102 Sum_probs=47.1
Q ss_pred CHHHHHHHHHhcCCCce-EEEEecCCCCCC---HHHHHHHHhccCCCCEEEEEcCCChHHHHhhhhcCCceEEeC
Q 007940 49 LARDALSLLRERKDGYD-IVISDVNMPDMD---GFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLK 119 (584)
Q Consensus 49 ~~~eAL~~L~~~~~~pD-LVIlDi~MPdmd---GlELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~K 119 (584)
+..+..+.+.+.. .| +.+.|....+.. -+++++.++....+|||+...-.+.+.+.+++..||+..++=
T Consensus 32 d~~~~a~~~~~~G--ad~i~v~d~~~~~~~~~~~~~~i~~i~~~~~iPvi~~Ggi~~~~~~~~~~~~Gad~V~lg 104 (252)
T 1ka9_F 32 DPVEAARAYDEAG--ADELVFLDISATHEERAILLDVVARVAERVFIPLTVGGGVRSLEDARKLLLSGADKVSVN 104 (252)
T ss_dssp CHHHHHHHHHHHT--CSCEEEEECCSSTTCHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHHTCSEEEEC
T ss_pred CHHHHHHHHHHcC--CCEEEEEcCCccccCccccHHHHHHHHHhCCCCEEEECCcCCHHHHHHHHHcCCCEEEEC
Confidence 4455555555432 44 445576543322 245677777667899999888888899999999999887653
No 208
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1
Probab=37.42 E-value=17 Score=33.86 Aligned_cols=76 Identities=9% Similarity=0.156 Sum_probs=45.1
Q ss_pred CE-EEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEe-c-CCCCC---CH--HHHHHHHhccC
Q 007940 18 LR-VLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISD-V-NMPDM---DG--FKLLEHVGLEM 89 (584)
Q Consensus 18 mr-VLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlD-i-~MPdm---dG--lELL~~Ir~~~ 89 (584)
|| |+|||........+.+.|++.|+.+..+......++.+.... +|.||+- = ..+.. .+ .++++.+ ..
T Consensus 1 m~mi~iid~~~s~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~--~dglil~gG~~~~~~~~~~~~~~~~i~~~--~~ 76 (195)
T 1qdl_B 1 MDLTLIIDNYDSFVYNIAQIVGELGSYPIVIRNDEISIKGIERID--PDRLIISPGPGTPEKREDIGVSLDVIKYL--GK 76 (195)
T ss_dssp CCEEEEEECSCSSHHHHHHHHHHTTCEEEEEETTTSCHHHHHHHC--CSEEEECCCSSCTTSHHHHTTHHHHHHHH--TT
T ss_pred CCEEEEEECCCchHHHHHHHHHhCCCEEEEEeCCCCCHHHHhhCC--CCEEEECCCCCChhhhhhhhHHHHHHHHh--cC
Confidence 46 999997666667788999999988776654321233333222 7888872 1 11222 11 2444443 34
Q ss_pred CCCEEEEE
Q 007940 90 DLPVIMMS 97 (584)
Q Consensus 90 ~iPVIvlS 97 (584)
.+||+-++
T Consensus 77 ~~PvLGIC 84 (195)
T 1qdl_B 77 RTPILGVC 84 (195)
T ss_dssp TSCEEEET
T ss_pred CCcEEEEe
Confidence 68988775
No 209
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=37.41 E-value=1.1e+02 Score=28.69 Aligned_cols=68 Identities=16% Similarity=0.126 Sum_probs=45.2
Q ss_pred CHHHHHHHHHhcCCCce-EEEEecCCCCC---CHHHHHHHHhccCCCCEEEEEcCCChHHHHhhhhcCCceEEe
Q 007940 49 LARDALSLLRERKDGYD-IVISDVNMPDM---DGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLL 118 (584)
Q Consensus 49 ~~~eAL~~L~~~~~~pD-LVIlDi~MPdm---dGlELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~ 118 (584)
+..+..+.+.+. +.| +.+.|...... ..+++++.++....+|+++...-.+.+.+.+++++||+...+
T Consensus 34 ~~~~~a~~~~~~--G~d~i~v~~~~~~~~~~~~~~~~i~~i~~~~~ipvi~~g~i~~~~~~~~~~~~Gad~V~i 105 (253)
T 1h5y_A 34 DPVEMAVRYEEE--GADEIAILDITAAPEGRATFIDSVKRVAEAVSIPVLVGGGVRSLEDATTLFRAGADKVSV 105 (253)
T ss_dssp CHHHHHHHHHHT--TCSCEEEEECCCCTTTHHHHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred cHHHHHHHHHHc--CCCEEEEEeCCccccCCcccHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 555666666553 367 44555433211 246677788766689999876667778888999999887764
No 210
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=37.14 E-value=1.4e+02 Score=29.50 Aligned_cols=42 Identities=17% Similarity=0.274 Sum_probs=29.7
Q ss_pred CCCCEEEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHH
Q 007940 89 MDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFR 135 (584)
Q Consensus 89 ~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlr 135 (584)
..+|||+.-..+... +.++.| .+++..| +.++|.+++.+++.
T Consensus 300 ~G~PvI~~~~~~~~~---e~v~~g-~g~lv~~-d~~~la~~i~~ll~ 341 (384)
T 1vgv_A 300 LGKPVLVMRDTTERP---EAVTAG-TVRLVGT-DKQRIVEEVTRLLK 341 (384)
T ss_dssp GTCCEEEESSCCSCH---HHHHHT-SEEEECS-SHHHHHHHHHHHHH
T ss_pred cCCCEEEccCCCCcc---hhhhCC-ceEEeCC-CHHHHHHHHHHHHh
Confidence 478998653323322 335667 8899988 99999999988875
No 211
>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1
Probab=37.12 E-value=58 Score=32.03 Aligned_cols=59 Identities=19% Similarity=0.300 Sum_probs=40.0
Q ss_pred HHHHHHHHhcCCCceEEEEecCCCCC---CHHHHHHHHhccCCCCEEEEEcCCChHHHHhhhhcCCceEEeC
Q 007940 51 RDALSLLRERKDGYDIVISDVNMPDM---DGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLK 119 (584)
Q Consensus 51 ~eAL~~L~~~~~~pDLVIlDi~MPdm---dGlELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~K 119 (584)
.++++.+.+. +.|+|.+-.. -++ +.+++++++|. .++|+|+++... ..+..|++.||+-
T Consensus 23 ~~~~~~l~~~--GaD~ielG~S-~Gvt~~~~~~~v~~ir~-~~~Pivlm~y~~------n~i~~G~dg~iiP 84 (240)
T 1viz_A 23 DEQLEILCES--GTDAVIIGGS-DGVTEDNVLRMMSKVRR-FLVPCVLEVSAI------EAIVPGFDLYFIP 84 (240)
T ss_dssp HHHHHHHHTS--CCSEEEECC-----CHHHHHHHHHHHTT-SSSCEEEECSCG------GGCCSCCSEEEEE
T ss_pred HHHHHHHHHc--CCCEEEECCC-CCCCHHHHHHHHHHhhC-cCCCEEEecCcc------ccccCCCCEEEEc
Confidence 4556666553 4788888763 222 26778888887 789999998663 2347899999976
No 212
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=37.05 E-value=2.8e+02 Score=28.65 Aligned_cols=99 Identities=12% Similarity=0.147 Sum_probs=64.1
Q ss_pred HHHHHHHHHhCCC--eEEEECC--HHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCCEEEEEcCCChHHH
Q 007940 30 LKILEKMLKKCSY--EVTTCGL--ARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRV 105 (584)
Q Consensus 30 r~~L~~lL~~~gy--~V~~a~~--~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVIvlSa~~d~~~~ 105 (584)
...+++++++.|. .|...+. ..+..+.+.......|++++--. .+.-|+.+++.+. ..+|||.. ..+ ..
T Consensus 321 ~~~l~~~~~~~~l~~~V~~~G~v~~~~~~~~~~~a~~~~dv~v~pS~-~Eg~~~~~lEAma--~G~PvI~s-~~~---g~ 393 (499)
T 2r60_A 321 LGKIIELIDNNDCRGKVSMFPLNSQQELAGCYAYLASKGSVFALTSF-YEPFGLAPVEAMA--SGLPAVVT-RNG---GP 393 (499)
T ss_dssp HHHHHHHHHHTTCBTTEEEEECCSHHHHHHHHHHHHHTTCEEEECCS-CBCCCSHHHHHHH--TTCCEEEE-SSB---HH
T ss_pred HHHHHHHHHhcCCCceEEECCCCCHHHHHHHHHhcCcCCCEEEECcc-cCCCCcHHHHHHH--cCCCEEEe-cCC---CH
Confidence 6778888887663 3554443 46666666652000178876432 2333566676653 57898854 332 34
Q ss_pred HhhhhcCCceEEeCCCCHHHHHHHHHHHHH
Q 007940 106 MKGVQHGACDYLLKPIRMKELRNIWQHVFR 135 (584)
Q Consensus 106 ~~aL~~GAdDYL~KP~~~~eL~~aI~~vlr 135 (584)
.+.+..|..+++..|.+.++|.+++.+++.
T Consensus 394 ~e~v~~~~~g~l~~~~d~~~la~~i~~ll~ 423 (499)
T 2r60_A 394 AEILDGGKYGVLVDPEDPEDIARGLLKAFE 423 (499)
T ss_dssp HHHTGGGTSSEEECTTCHHHHHHHHHHHHS
T ss_pred HHHhcCCceEEEeCCCCHHHHHHHHHHHHh
Confidence 566677788899999999999999988874
No 213
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=36.89 E-value=45 Score=32.44 Aligned_cols=42 Identities=19% Similarity=0.088 Sum_probs=34.4
Q ss_pred HHHHHHHHhccCCCCEEEEEcCCChHHHHhhhhcCCceEEeC
Q 007940 78 GFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLK 119 (584)
Q Consensus 78 GlELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~K 119 (584)
.++++++++...++||++-.+-.+.+.+.+++.+||+.+++=
T Consensus 189 ~~~~i~~v~~~~~~pI~vgGGI~~~e~~~~~~~~GAdgvvVG 230 (262)
T 1rd5_A 189 VESLIQEVKKVTNKPVAVGFGISKPEHVKQIAQWGADGVIIG 230 (262)
T ss_dssp HHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHhhcCCeEEEECCcCCHHHHHHHHHcCCCEEEEC
Confidence 556788887666899998777777899999999999999864
No 214
>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*
Probab=36.86 E-value=31 Score=33.86 Aligned_cols=59 Identities=17% Similarity=0.282 Sum_probs=41.4
Q ss_pred HHHHHHHHhcCCCceEEEEecCCCCC---CHHHHHHHHhccCCCCEEEEEcCCChHHHHhhhhcCCceEEeC
Q 007940 51 RDALSLLRERKDGYDIVISDVNMPDM---DGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLK 119 (584)
Q Consensus 51 ~eAL~~L~~~~~~pDLVIlDi~MPdm---dGlELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~K 119 (584)
.++++.+.+. +.|+|.+-+. -++ +-+++++++|. .++|+|+|+...+ .+..|++.+|+-
T Consensus 23 ~~~~~~l~~~--GaD~IelG~S-~g~t~~~~~~~v~~ir~-~~~Pivl~~y~~n------~i~~gvDg~iip 84 (234)
T 2f6u_A 23 DEIIKAVADS--GTDAVMISGT-QNVTYEKARTLIEKVSQ-YGLPIVVEPSDPS------NVVYDVDYLFVP 84 (234)
T ss_dssp HHHHHHHHTT--TCSEEEECCC-TTCCHHHHHHHHHHHTT-SCCCEEECCSSCC------CCCCCSSEEEEE
T ss_pred HHHHHHHHHc--CCCEEEECCC-CCCCHHHHHHHHHHhcC-CCCCEEEecCCcc------hhhcCCCEEEEc
Confidence 4556666553 4799998873 222 25777888876 7899999987632 237799999875
No 215
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=36.71 E-value=48 Score=31.95 Aligned_cols=81 Identities=16% Similarity=0.142 Sum_probs=50.3
Q ss_pred HHHHHHHHHhcCCCceEEEEecC---C-CC-CCHHHHHHHHhccCCCCEE--EEEcCCChHHHHhhhhcCCceEEeCCC-
Q 007940 50 ARDALSLLRERKDGYDIVISDVN---M-PD-MDGFKLLEHVGLEMDLPVI--MMSVDGETSRVMKGVQHGACDYLLKPI- 121 (584)
Q Consensus 50 ~~eAL~~L~~~~~~pDLVIlDi~---M-Pd-mdGlELL~~Ir~~~~iPVI--vlSa~~d~~~~~~aL~~GAdDYL~KP~- 121 (584)
-.+.++.+.+. +.|+|=+|+. . |. ..|+++++.++...+.|+. +++.. ....+..+.++||+.+.....
T Consensus 19 l~~~i~~~~~~--Gad~ihldi~DG~fvp~~~~g~~~v~~lr~~~~~~~~vhlmv~d-p~~~i~~~~~aGadgv~vh~e~ 95 (230)
T 1tqj_A 19 LGEEIKAVDEA--GADWIHVDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHLMIVE-PEKYVEDFAKAGADIISVHVEH 95 (230)
T ss_dssp HHHHHHHHHHT--TCSEEEEEEEBSSSSSCBCBCHHHHHHHGGGCCSEEEEEEESSS-GGGTHHHHHHHTCSEEEEECST
T ss_pred HHHHHHHHHHc--CCCEEEEEEEecCCCcchhhhHHHHHHHHhhcCCcEEEEEEccC-HHHHHHHHHHcCCCEEEECccc
Confidence 34556665543 3677666662 1 22 2367999999876666765 66643 344677889999999877655
Q ss_pred -CHHHHHHHHHHH
Q 007940 122 -RMKELRNIWQHV 133 (584)
Q Consensus 122 -~~~eL~~aI~~v 133 (584)
......+.++.+
T Consensus 96 ~~~~~~~~~~~~i 108 (230)
T 1tqj_A 96 NASPHLHRTLCQI 108 (230)
T ss_dssp TTCTTHHHHHHHH
T ss_pred ccchhHHHHHHHH
Confidence 434444544444
No 216
>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2
Probab=36.58 E-value=49 Score=30.89 Aligned_cols=55 Identities=13% Similarity=0.141 Sum_probs=34.5
Q ss_pred CceEEEEecCCCCCCH-------HHHHHHHhcc-----CCCCEEEEEcCCChHHHHhhhhcCCceEEe
Q 007940 63 GYDIVISDVNMPDMDG-------FKLLEHVGLE-----MDLPVIMMSVDGETSRVMKGVQHGACDYLL 118 (584)
Q Consensus 63 ~pDLVIlDi~MPdmdG-------lELL~~Ir~~-----~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~ 118 (584)
..|.|+++...|+.+| ++.++.++.. .++|+++ ++--..+.+.+++++||+.+++
T Consensus 131 ~~d~vl~~~~~~g~~g~~~~~~~~~~i~~~~~~~~~~~~~~~i~v-~GGI~~~~~~~~~~~Gad~vvv 197 (220)
T 2fli_A 131 LVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEV-DGGVDNKTIRACYEAGANVFVA 197 (220)
T ss_dssp TCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHHHHTTCCCEEEE-ESSCCTTTHHHHHHHTCCEEEE
T ss_pred hCCEEEEEEECCCCcccccCHHHHHHHHHHHHHHHhcCCCceEEE-ECcCCHHHHHHHHHcCCCEEEE
Confidence 3788888776666554 2334444322 1566654 4444467777888889998764
No 217
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}
Probab=36.17 E-value=27 Score=32.52 Aligned_cols=81 Identities=16% Similarity=0.120 Sum_probs=47.3
Q ss_pred CHHHHHHHHHhcCCCceEEEEecCCCC--CCHHHHHHHHhccC-CCCEEE--EEcCCChHHHHhhhhcCCceEEeCCCCH
Q 007940 49 LARDALSLLRERKDGYDIVISDVNMPD--MDGFKLLEHVGLEM-DLPVIM--MSVDGETSRVMKGVQHGACDYLLKPIRM 123 (584)
Q Consensus 49 ~~~eAL~~L~~~~~~pDLVIlDi~MPd--mdGlELL~~Ir~~~-~iPVIv--lSa~~d~~~~~~aL~~GAdDYL~KP~~~ 123 (584)
+.+++++.++......| ++++.++- .+|.++++.++... +.|+++ +........+..+.++||+...+.+...
T Consensus 11 ~~~~~~~~~~~~~~~v~--~iev~~~~~~~~g~~~i~~l~~~~~~~~i~~~l~~~di~~~~~~~a~~~Gad~v~vh~~~~ 88 (207)
T 3ajx_A 11 STEAALELAGKVAEYVD--IIELGTPLIKAEGLSVITAVKKAHPDKIVFADMKTMDAGELEADIAFKAGADLVTVLGSAD 88 (207)
T ss_dssp CHHHHHHHHHHHGGGCS--EEEECHHHHHHHCTHHHHHHHHHSTTSEEEEEEEECSCHHHHHHHHHHTTCSEEEEETTSC
T ss_pred CHHHHHHHHHHhhccCC--EEEECcHHHHhhCHHHHHHHHHhCCCCeEEEEEEecCccHHHHHHHHhCCCCEEEEeccCC
Confidence 45666666654322223 35665542 35677888887553 778774 4332122347788999999888777655
Q ss_pred -HHHHHHHH
Q 007940 124 -KELRNIWQ 131 (584)
Q Consensus 124 -~eL~~aI~ 131 (584)
..+...++
T Consensus 89 ~~~~~~~~~ 97 (207)
T 3ajx_A 89 DSTIAGAVK 97 (207)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 44443333
No 218
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=35.67 E-value=57 Score=30.83 Aligned_cols=66 Identities=18% Similarity=0.290 Sum_probs=45.0
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHHhCCCe---EE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHH
Q 007940 16 AGLRVLVVDDDLAWLKILEKMLKKCSYE---VT-TCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHV 85 (584)
Q Consensus 16 ~gmrVLIVDDd~~~r~~L~~lL~~~gy~---V~-~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~I 85 (584)
.+.+|..||-++...+..++.++..|.. +. ..+++.+.+..+. ...||+|++|..... -.++++.+
T Consensus 80 ~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~--~~~fD~V~~d~~~~~--~~~~l~~~ 149 (221)
T 3dr5_A 80 DNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLA--NDSYQLVFGQVSPMD--LKALVDAA 149 (221)
T ss_dssp TTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSC--TTCEEEEEECCCTTT--HHHHHHHH
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhc--CCCcCeEEEcCcHHH--HHHHHHHH
Confidence 3569999999999999999999987754 44 4455555443331 245999999975433 33345444
No 219
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=35.59 E-value=1e+02 Score=30.69 Aligned_cols=65 Identities=20% Similarity=0.282 Sum_probs=43.4
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhccCCCCEEEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHH
Q 007940 64 YDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFR 135 (584)
Q Consensus 64 pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlr 135 (584)
.|++++--. .+.-|..+++.+. ..+|||... .+. ..+.+..|-.+++..|-+.++|.+++.+++.
T Consensus 285 adv~v~ps~-~e~~~~~~~EAma--~G~PvI~~~-~~~---~~e~v~~~~~g~~~~~~d~~~la~~i~~l~~ 349 (394)
T 2jjm_A 285 SDLMLLLSE-KESFGLVLLEAMA--CGVPCIGTR-VGG---IPEVIQHGDTGYLCEVGDTTGVADQAIQLLK 349 (394)
T ss_dssp CSEEEECCS-CCSCCHHHHHHHH--TTCCEEEEC-CTT---STTTCCBTTTEEEECTTCHHHHHHHHHHHHH
T ss_pred CCEEEeccc-cCCCchHHHHHHh--cCCCEEEec-CCC---hHHHhhcCCceEEeCCCCHHHHHHHHHHHHc
Confidence 466665433 2333566666653 568888543 322 2345666778999999999999999988875
No 220
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A
Probab=35.16 E-value=1.3e+02 Score=28.41 Aligned_cols=78 Identities=18% Similarity=0.222 Sum_probs=49.7
Q ss_pred CHHHHHHHHHhcCCCce-EEEEecCCCCC---CHHHHHHHHhccCCCCEEEEEcCCChHHHHhhhhc---CCceEEe---
Q 007940 49 LARDALSLLRERKDGYD-IVISDVNMPDM---DGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQH---GACDYLL--- 118 (584)
Q Consensus 49 ~~~eAL~~L~~~~~~pD-LVIlDi~MPdm---dGlELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~---GAdDYL~--- 118 (584)
+..+....+.+. .+| ++++++.-.++ -.++++++++....+|||....-...+.+.+++++ ||+.+++
T Consensus 147 ~~~e~~~~~~~~--G~~~i~~~~~~~~~~~~g~~~~~~~~i~~~~~ipvia~GGI~~~~d~~~~~~~~~~Gadgv~vG~a 224 (244)
T 1vzw_A 147 DLYETLDRLNKE--GCARYVVTDIAKDGTLQGPNLELLKNVCAATDRPVVASGGVSSLDDLRAIAGLVPAGVEGAIVGKA 224 (244)
T ss_dssp BHHHHHHHHHHT--TCCCEEEEEC-------CCCHHHHHHHHHTCSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECHH
T ss_pred CHHHHHHHHHhC--CCCEEEEeccCcccccCCCCHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHhhccCCCceeeeeHH
Confidence 445554544443 366 45566542111 23788888876668999988777777889999999 9998764
Q ss_pred ---CCCCHHHHHH
Q 007940 119 ---KPIRMKELRN 128 (584)
Q Consensus 119 ---KP~~~~eL~~ 128 (584)
.|+...++.+
T Consensus 225 l~~~~~~~~~~~~ 237 (244)
T 1vzw_A 225 LYAKAFTLEEALE 237 (244)
T ss_dssp HHTTSSCHHHHHH
T ss_pred HHcCCCCHHHHHH
Confidence 3555554443
No 221
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=34.53 E-value=90 Score=31.06 Aligned_cols=77 Identities=13% Similarity=0.212 Sum_probs=54.2
Q ss_pred CCeEEEECCH--------HHHHHHH----HhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCCEEEEEcCCChHHHHhh
Q 007940 41 SYEVTTCGLA--------RDALSLL----RERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKG 108 (584)
Q Consensus 41 gy~V~~a~~~--------~eAL~~L----~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVIvlSa~~d~~~~~~a 108 (584)
+..+.++++| +++...+ +++. ||+||+=---|...|-.-.|.+-....+|.|+++...... ..++
T Consensus 32 dI~vrv~gsGaKm~pe~~~~~~~~~~~~~~~~~--pDfvI~isPN~a~PGP~~ARE~l~~~~iP~IvI~D~p~~K-~kd~ 108 (283)
T 1qv9_A 32 DVEFRVVGTSVKMDPECVEAAVEMALDIAEDFE--PDFIVYGGPNPAAPGPSKAREMLADSEYPAVIIGDAPGLK-VKDE 108 (283)
T ss_dssp SEEEEEEECTTCCSHHHHHHHHHHHHHHHHHHC--CSEEEEECSCTTSHHHHHHHHHHHTSSSCEEEEEEGGGGG-GHHH
T ss_pred CceEEEeccCCCCCHHHHHHHHHHhhhhhhhcC--CCEEEEECCCCCCCCchHHHHHHHhCCCCEEEEcCCcchh-hHHH
Confidence 4556666654 3333443 4444 8999986666777888888887667899999999776555 5688
Q ss_pred hhcCCceEEeCC
Q 007940 109 VQHGACDYLLKP 120 (584)
Q Consensus 109 L~~GAdDYL~KP 120 (584)
++..-.+||+-+
T Consensus 109 l~~~g~GYIivk 120 (283)
T 1qv9_A 109 MEEQGLGYILVK 120 (283)
T ss_dssp HHHTTCEEEEET
T ss_pred HHhcCCcEEEEe
Confidence 887778887554
No 222
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=34.49 E-value=70 Score=32.56 Aligned_cols=111 Identities=18% Similarity=0.182 Sum_probs=53.8
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCCe----------EEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh
Q 007940 17 GLRVLVVDDDLAWLKILEKMLKKCSYE----------VTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVG 86 (584)
Q Consensus 17 gmrVLIVDDd~~~r~~L~~lL~~~gy~----------V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir 86 (584)
+.+++||-+.+.....+++.+++.|.. |...+...+....+.. .|++++--..-+.-|.-+++.+
T Consensus 225 ~~~lvivG~g~~~~~~l~~~~~~~gl~~~~~~~~~~~v~~~~~~~dl~~~y~~----aDv~vl~ss~~e~gg~~~lEAm- 299 (374)
T 2xci_A 225 SLKLILVPRHIENAKIFEKKARDFGFKTSFFENLEGDVILVDRFGILKELYPV----GKIAIVGGTFVNIGGHNLLEPT- 299 (374)
T ss_dssp TCEEEEEESSGGGHHHHHHHHHHTTCCEEETTCCCSSEEECCSSSCHHHHGGG----EEEEEECSSSSSSCCCCCHHHH-
T ss_pred CcEEEEECCCHHHHHHHHHHHHHCCCceEEecCCCCcEEEECCHHHHHHHHHh----CCEEEECCcccCCCCcCHHHHH-
Confidence 345666665554434455555554432 2222212233333322 4665552111111123344444
Q ss_pred ccCCCCEEEEEcCCChHHHHhh-hhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 007940 87 LEMDLPVIMMSVDGETSRVMKG-VQHGACDYLLKPIRMKELRNIWQHVFRK 136 (584)
Q Consensus 87 ~~~~iPVIvlSa~~d~~~~~~a-L~~GAdDYL~KP~~~~eL~~aI~~vlrr 136 (584)
...+|||.-+.......+.+. ...| ++..+-+.++|.+++.+++..
T Consensus 300 -A~G~PVI~~~~~~~~~e~~~~~~~~G---~l~~~~d~~~La~ai~~ll~d 346 (374)
T 2xci_A 300 -CWGIPVIYGPYTHKVNDLKEFLEKEG---AGFEVKNETELVTKLTELLSV 346 (374)
T ss_dssp -TTTCCEEECSCCTTSHHHHHHHHHTT---CEEECCSHHHHHHHHHHHHHS
T ss_pred -HhCCCEEECCCccChHHHHHHHHHCC---CEEEeCCHHHHHHHHHHHHhH
Confidence 357899842122332333332 2334 666677899999999988853
No 223
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Probab=34.32 E-value=1.6e+02 Score=27.00 Aligned_cols=92 Identities=14% Similarity=0.156 Sum_probs=53.2
Q ss_pred HHHhCCCeEE-EECCHHHHHHHHHhc-CCCceEEEEecCCCCCCHHHHHHHHhcc-CCCCEEEEEcCCChHHHHhhhhcC
Q 007940 36 MLKKCSYEVT-TCGLARDALSLLRER-KDGYDIVISDVNMPDMDGFKLLEHVGLE-MDLPVIMMSVDGETSRVMKGVQHG 112 (584)
Q Consensus 36 lL~~~gy~V~-~a~~~~eAL~~L~~~-~~~pDLVIlDi~MPdmdGlELL~~Ir~~-~~iPVIvlSa~~d~~~~~~aL~~G 112 (584)
.|.+.+..+. ...+.+++.+.++.. ..++++|-+.+..| ++.+.++.++.. +.-.+|-+..-.+.+.+..+.+.|
T Consensus 6 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~G~~~iev~~~~~--~~~~~i~~ir~~~~~~~~ig~~~v~~~~~~~~a~~~G 83 (205)
T 1wa3_A 6 LFKKHKIVAVLRANSVEEAKEKALAVFEGGVHLIEITFTVP--DADTVIKELSFLKEKGAIIGAGTVTSVEQCRKAVESG 83 (205)
T ss_dssp HHHHHCEEEEECCSSHHHHHHHHHHHHHTTCCEEEEETTST--THHHHHHHTHHHHHTTCEEEEESCCSHHHHHHHHHHT
T ss_pred HHhhCCEEEEEecCCHHHHHHHHHHHHHCCCCEEEEeCCCh--hHHHHHHHHHHHCCCCcEEEecccCCHHHHHHHHHcC
Confidence 4555553332 344566666554432 13478776666654 567778877654 212234443335677788999999
Q ss_pred CceEEeCCCCHHHHHHHH
Q 007940 113 ACDYLLKPIRMKELRNIW 130 (584)
Q Consensus 113 AdDYL~KP~~~~eL~~aI 130 (584)
|+-. .-|....++.+..
T Consensus 84 ad~i-v~~~~~~~~~~~~ 100 (205)
T 1wa3_A 84 AEFI-VSPHLDEEISQFC 100 (205)
T ss_dssp CSEE-ECSSCCHHHHHHH
T ss_pred CCEE-EcCCCCHHHHHHH
Confidence 8755 6676555554443
No 224
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=34.13 E-value=1.2e+02 Score=30.57 Aligned_cols=94 Identities=10% Similarity=-0.031 Sum_probs=57.1
Q ss_pred EEEEEeCCHHHH----HHHHHHHHhCC--CeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhcc-CCC
Q 007940 19 RVLVVDDDLAWL----KILEKMLKKCS--YEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLE-MDL 91 (584)
Q Consensus 19 rVLIVDDd~~~r----~~L~~lL~~~g--y~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~-~~i 91 (584)
-+||-|++-... ..++..-+..+ ...+.+.+.+++.++++. +.|+|++|-.-|. +-.+.++.++.. ++
T Consensus 167 ~vlikdnHi~~ag~i~~av~~ar~~~~~~~I~Vev~t~eea~eal~a---GaD~I~LDn~~~~-~~~~~v~~l~~~~~~- 241 (284)
T 1qpo_A 167 AALIKDNHVAAAGSVVDALRAVRNAAPDLPCEVEVDSLEQLDAVLPE---KPELILLDNFAVW-QTQTAVQRRDSRAPT- 241 (284)
T ss_dssp SEEECHHHHHHHSSHHHHHHHHHHHCTTSCEEEEESSHHHHHHHGGG---CCSEEEEETCCHH-HHHHHHHHHHHHCTT-
T ss_pred hhcccHhHHHHcCCHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHc---CCCEEEECCCCHH-HHHHHHHHhhccCCC-
Confidence 357776654432 23333333344 344567788888888774 3799999974331 122333444321 23
Q ss_pred CEEEEEcCCChHHHHhhhhcCCceEE
Q 007940 92 PVIMMSVDGETSRVMKGVQHGACDYL 117 (584)
Q Consensus 92 PVIvlSa~~d~~~~~~aL~~GAdDYL 117 (584)
..|..|+--+.+.+.+..+.|++-+.
T Consensus 242 v~ieaSGGIt~~~i~~~a~tGVD~is 267 (284)
T 1qpo_A 242 VMLESSGGLSLQTAATYAETGVDYLA 267 (284)
T ss_dssp CEEEEESSCCTTTHHHHHHTTCSEEE
T ss_pred eEEEEECCCCHHHHHHHHhcCCCEEE
Confidence 35667887888888888899987665
No 225
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=33.98 E-value=1.6e+02 Score=27.74 Aligned_cols=63 Identities=16% Similarity=0.230 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhCCCeEEEECCH------HHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCCEEEEEc
Q 007940 29 WLKILEKMLKKCSYEVTTCGLA------RDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSV 98 (584)
Q Consensus 29 ~r~~L~~lL~~~gy~V~~a~~~------~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVIvlSa 98 (584)
+...+++.+++.||.+..+... .+.++.+... .+|.||+--..+ -+.++.+. ...+|||++..
T Consensus 25 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~--~vdgiIi~~~~~----~~~~~~l~-~~~iPvV~i~~ 93 (276)
T 3jy6_A 25 LFKGISSILESRGYIGVLFDANADIEREKTLLRAIGSR--GFDGLILQSFSN----PQTVQEIL-HQQMPVVSVDR 93 (276)
T ss_dssp HHHHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHTT--TCSEEEEESSCC----HHHHHHHH-TTSSCEEEESC
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhC--CCCEEEEecCCc----HHHHHHHH-HCCCCEEEEec
Confidence 4556677788889988765432 2344455443 388888854333 55666664 35899998854
No 226
>3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A
Probab=33.78 E-value=47 Score=32.70 Aligned_cols=59 Identities=15% Similarity=0.202 Sum_probs=40.9
Q ss_pred HHHHHHHhcCCCceEEEEecCC--CCCCHHHHHHHHhccCCCCEEEEEcCCChHHHHhhhhcCCceEEeC
Q 007940 52 DALSLLRERKDGYDIVISDVNM--PDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLK 119 (584)
Q Consensus 52 eAL~~L~~~~~~pDLVIlDi~M--PdmdGlELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~K 119 (584)
++++.+.+ .+.|+|++-... -..+-++++++|+. .++|+|++.... +.+..|||.|+.-
T Consensus 27 ~~l~~~~~--~GtDaI~vGgs~gvt~~~~~~~v~~ik~-~~~Piil~p~~~------~~~~~gaD~il~p 87 (235)
T 3w01_A 27 DDLDAICM--SQTDAIMIGGTDDVTEDNVIHLMSKIRR-YPLPLVLEISNI------ESVMPGFDFYFVP 87 (235)
T ss_dssp HHHHHHHT--SSCSEEEECCSSCCCHHHHHHHHHHHTT-SCSCEEEECCCS------TTCCTTCSEEEEE
T ss_pred HHHHHHHH--cCCCEEEECCcCCcCHHHHHHHHHHhcC-cCCCEEEecCCH------HHhhcCCCEEEEc
Confidence 45555544 347999997743 22345778888887 899999998753 3456699998865
No 227
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=33.61 E-value=97 Score=30.38 Aligned_cols=41 Identities=17% Similarity=0.129 Sum_probs=32.0
Q ss_pred HHHHHHHhccCCCCEEEEEcCCChHHHHhhhhcCCceEEeC
Q 007940 79 FKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLK 119 (584)
Q Consensus 79 lELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~K 119 (584)
.+++++++...++||++=.+-...+.+.+++..||+.+++=
T Consensus 194 ~~~i~~lr~~~~~pi~vggGI~t~e~~~~~~~agAD~vVVG 234 (268)
T 1qop_A 194 HHLIEKLKEYHAAPALQGFGISSPEQVSAAVRAGAAGAISG 234 (268)
T ss_dssp HHHHHHHHHTTCCCEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHhccCCcEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 57888887666889776444455788888899999999875
No 228
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=33.58 E-value=28 Score=34.94 Aligned_cols=77 Identities=14% Similarity=0.155 Sum_probs=48.6
Q ss_pred CCCEEEEEeC-----CHHHHHHHHHHHHhCC-CeEEEECCHH-----HHHHHHHhcCCCceEEEEecCCCCCCHH--HHH
Q 007940 16 AGLRVLVVDD-----DLAWLKILEKMLKKCS-YEVTTCGLAR-----DALSLLRERKDGYDIVISDVNMPDMDGF--KLL 82 (584)
Q Consensus 16 ~gmrVLIVDD-----d~~~r~~L~~lL~~~g-y~V~~a~~~~-----eAL~~L~~~~~~pDLVIlDi~MPdmdGl--ELL 82 (584)
+.+|||||.- -+.....|.++|++.| |+|.+..+.. +.+. ..-..+|+||++..+...+.- +.+
T Consensus 3 ~~~kvLiv~G~~~H~~~~~~~~l~~~l~~~g~f~V~~~~d~~~~~d~~~f~---~~L~~~D~vV~~~~~~~l~~~~~~~l 79 (281)
T 4e5v_A 3 KPIKTLLITGQNNHNWQVSHVVLKQILENSGRFDVDFVISPEQGKDMSGFV---LDFSPYQLVVLDYNGDSWPEETNRRF 79 (281)
T ss_dssp CCEEEEEEESCCSSCHHHHHHHHHHHHHHTTSEEEEEEECCCTTSCCTTCC---CCCTTCSEEEECCCSSCCCHHHHHHH
T ss_pred CceEEEEEcCCCCCChHHHHHHHHHHHHhcCCEEEEEEeCCccccchhHHh---hhhhcCCEEEEeCCCCcCCHHHHHHH
Confidence 4579999986 3667789999999998 9998776531 2221 111349999988865444332 222
Q ss_pred -HHHhccCCCCEEEEE
Q 007940 83 -EHVGLEMDLPVIMMS 97 (584)
Q Consensus 83 -~~Ir~~~~iPVIvlS 97 (584)
+.++ ....+|++-
T Consensus 80 ~~yV~--~Ggglv~~H 93 (281)
T 4e5v_A 80 LEYVQ--NGGGVVIYH 93 (281)
T ss_dssp HHHHH--TTCEEEEEG
T ss_pred HHHHH--cCCCEEEEe
Confidence 2232 356777764
No 229
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=33.45 E-value=1.4e+02 Score=28.06 Aligned_cols=56 Identities=21% Similarity=0.318 Sum_probs=41.4
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCC--eE-EEECCHHHHHHHHHhcC--CCceEEEEecC
Q 007940 17 GLRVLVVDDDLAWLKILEKMLKKCSY--EV-TTCGLARDALSLLRERK--DGYDIVISDVN 72 (584)
Q Consensus 17 gmrVLIVDDd~~~r~~L~~lL~~~gy--~V-~~a~~~~eAL~~L~~~~--~~pDLVIlDi~ 72 (584)
+.+|..||-++...+..++.++..|. .+ ....++.+.+..+.... ..||+|++|..
T Consensus 97 ~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~V~~d~~ 157 (232)
T 3cbg_A 97 DGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDLIFIDAD 157 (232)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEEEEECSC
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCEEEECCC
Confidence 56999999999999999998877664 23 35677777666554321 35999999964
No 230
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*
Probab=33.44 E-value=91 Score=29.50 Aligned_cols=77 Identities=17% Similarity=0.192 Sum_probs=50.7
Q ss_pred HHHHHHHHHhcCCCceEE-EEecCCCCC---CHHHHHHHHhccCCCCEEEEEcCCChHHHHhhhhc---CCceEEe----
Q 007940 50 ARDALSLLRERKDGYDIV-ISDVNMPDM---DGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQH---GACDYLL---- 118 (584)
Q Consensus 50 ~~eAL~~L~~~~~~pDLV-IlDi~MPdm---dGlELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~---GAdDYL~---- 118 (584)
..+.+..+.+. +++.| ++++.-.++ -.++++++++....+|||.-..-...+.+.++++. ||+.+++
T Consensus 151 ~~e~~~~~~~~--G~~~i~~~~~~~~~~~~g~~~~~~~~l~~~~~ipvia~GGI~~~~d~~~~~~~~~~Gad~v~vG~al 228 (244)
T 2y88_A 151 LWDVLERLDSE--GCSRFVVTDITKDGTLGGPNLDLLAGVADRTDAPVIASGGVSSLDDLRAIATLTHRGVEGAIVGKAL 228 (244)
T ss_dssp HHHHHHHHHHT--TCCCEEEEETTTTTTTSCCCHHHHHHHHTTCSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECHHH
T ss_pred HHHHHHHHHhC--CCCEEEEEecCCccccCCCCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHhhccCCCCEEEEcHHH
Confidence 34555555443 36644 566543322 24788888876678999988777777888999988 9998764
Q ss_pred --CCCCHHHHHH
Q 007940 119 --KPIRMKELRN 128 (584)
Q Consensus 119 --KP~~~~eL~~ 128 (584)
.|....++.+
T Consensus 229 ~~~~~~~~~~~~ 240 (244)
T 2y88_A 229 YARRFTLPQALA 240 (244)
T ss_dssp HTTSSCHHHHHH
T ss_pred HCCCcCHHHHHH
Confidence 3555555443
No 231
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=33.30 E-value=75 Score=31.74 Aligned_cols=72 Identities=26% Similarity=0.264 Sum_probs=0.0
Q ss_pred CCEEEEEe----CCHHHHHHHHHHHHhCCCeEEEECC-------------------------------------------
Q 007940 17 GLRVLVVD----DDLAWLKILEKMLKKCSYEVTTCGL------------------------------------------- 49 (584)
Q Consensus 17 gmrVLIVD----Dd~~~r~~L~~lL~~~gy~V~~a~~------------------------------------------- 49 (584)
.||||++- -+..-...|...|++.|++|..+..
T Consensus 1 ~MrIl~~~~~~~gh~~~~~~la~~L~~~GheV~v~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (391)
T 3tsa_A 1 HMRVLVVPLPYPTHLMAMVPLCWALQASGHEVLIAAPPELQATAHGAGLTTAGIRGNDRTGDTGGTTQLRFPNPAFGQRD 80 (391)
T ss_dssp CCEEEEECCSCHHHHHTTHHHHHHHHHTTCEEEEEECHHHHHHHHHBTCEEEEC--------------CCSCCGGGGCTT
T ss_pred CcEEEEEcCCCcchhhhHHHHHHHHHHCCCEEEEecChhhHHHHHhCCCceeeecCCccchhhhhhhccccccccccccc
Q ss_pred ----------------------HHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCCEEEE
Q 007940 50 ----------------------ARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMM 96 (584)
Q Consensus 50 ----------------------~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVIvl 96 (584)
..+..+.+++.+ ||+|+.|. +...|.-+.+.++ +|+|.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--PD~Vv~~~--~~~~~~~aa~~~g----iP~v~~ 141 (391)
T 3tsa_A 81 TEAGRQLWEQTASNVAQSSLDQLPEYLRLAEAWR--PSVLLVDV--CALIGRVLGGLLD----LPVVLH 141 (391)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CSEEEEET--TCHHHHHHHHHTT----CCEEEE
T ss_pred chhHHHHHHHHHHHHhhcchhhHHHHHHHHHhcC--CCEEEeCc--chhHHHHHHHHhC----CCEEEE
No 232
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=33.28 E-value=1.6e+02 Score=27.93 Aligned_cols=69 Identities=16% Similarity=0.160 Sum_probs=44.5
Q ss_pred CHHHHHHHHHhcCCCceEEE-EecCCCCC---CHHHHHHHHhccCCCCEEEEEcCCChHHHHhhhhcCCceEEeC
Q 007940 49 LARDALSLLRERKDGYDIVI-SDVNMPDM---DGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLK 119 (584)
Q Consensus 49 ~~~eAL~~L~~~~~~pDLVI-lDi~MPdm---dGlELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~K 119 (584)
+..+..+.+.+. +.|.|. .|...... ..+++++.++....+||++...-.+.+.+.++++.||+..++-
T Consensus 31 d~~~~a~~~~~~--Gad~i~v~d~~~~~~~~~~~~~~i~~i~~~~~ipvi~~ggI~~~~~~~~~~~~Gad~V~lg 103 (253)
T 1thf_D 31 DPVELGKFYSEI--GIDELVFLDITASVEKRKTMLELVEKVAEQIDIPFTVGGGIHDFETASELILRGADKVSIN 103 (253)
T ss_dssp CHHHHHHHHHHT--TCCEEEEEESSCSSSHHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHTTCSEEEES
T ss_pred CHHHHHHHHHHc--CCCEEEEECCchhhcCCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 444555555543 355544 44322111 1356677777667899998777777888999999999887654
No 233
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=32.90 E-value=41 Score=31.30 Aligned_cols=72 Identities=15% Similarity=0.146 Sum_probs=42.5
Q ss_pred CHHHHHHHHHhcCCCceEEEEecCCCC--CCHHHHHHHHhcc-CCCCEEE--EEcCCChHHHHhhhhcCCceEEeCCCC
Q 007940 49 LARDALSLLRERKDGYDIVISDVNMPD--MDGFKLLEHVGLE-MDLPVIM--MSVDGETSRVMKGVQHGACDYLLKPIR 122 (584)
Q Consensus 49 ~~~eAL~~L~~~~~~pDLVIlDi~MPd--mdGlELL~~Ir~~-~~iPVIv--lSa~~d~~~~~~aL~~GAdDYL~KP~~ 122 (584)
+.+++++.++.....+|+|-+- +|- ..|+++++.++.. +++||.+ +........+..+.++||+..++--..
T Consensus 11 ~~~~~~~~~~~~~~~~diie~G--~p~~~~~g~~~i~~ir~~~~~~~i~~~~~~~~~~~~~~~~~~~~Gad~v~v~~~~ 87 (211)
T 3f4w_A 11 TLPEAMVFMDKVVDDVDIIEVG--TPFLIREGVNAIKAIKEKYPHKEVLADAKIMDGGHFESQLLFDAGADYVTVLGVT 87 (211)
T ss_dssp CHHHHHHHHHHHGGGCSEEEEC--HHHHHHHTTHHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHTTCSEEEEETTS
T ss_pred CHHHHHHHHHHhhcCccEEEeC--cHHHHhccHHHHHHHHHhCCCCEEEEEEEeccchHHHHHHHHhcCCCEEEEeCCC
Confidence 3455555554432235544332 242 3578889988765 5778743 233333333788999999988775443
No 234
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=32.90 E-value=1.3e+02 Score=28.77 Aligned_cols=67 Identities=15% Similarity=0.224 Sum_probs=47.0
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCC--eEE-EECCHHHHHHHHHhc---CCCceEEEEecCCCCCCHHHHHHHH
Q 007940 17 GLRVLVVDDDLAWLKILEKMLKKCSY--EVT-TCGLARDALSLLRER---KDGYDIVISDVNMPDMDGFKLLEHV 85 (584)
Q Consensus 17 gmrVLIVDDd~~~r~~L~~lL~~~gy--~V~-~a~~~~eAL~~L~~~---~~~pDLVIlDi~MPdmdGlELL~~I 85 (584)
+.+|..||-++...+..++.++..|. .|. ..+++.+.+..+... ...||+|++|.... +-..+++.+
T Consensus 104 ~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~V~~d~~~~--~~~~~l~~~ 176 (247)
T 1sui_A 104 DGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDADKD--NYLNYHKRL 176 (247)
T ss_dssp TCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBSEEEECSCST--THHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCEEEEEEcCchH--HHHHHHHHH
Confidence 56999999999999999999988875 243 567777776655321 23599999996532 334445544
No 235
>3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482}
Probab=32.67 E-value=55 Score=30.80 Aligned_cols=68 Identities=12% Similarity=0.088 Sum_probs=46.7
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEecCCCC--------CCHHHHHHHHhcc--CCCCEEEEEcCCChHHHHhhhhcCCce
Q 007940 46 TCGLARDALSLLRERKDGYDIVISDVNMPD--------MDGFKLLEHVGLE--MDLPVIMMSVDGETSRVMKGVQHGACD 115 (584)
Q Consensus 46 ~a~~~~eAL~~L~~~~~~pDLVIlDi~MPd--------mdGlELL~~Ir~~--~~iPVIvlSa~~d~~~~~~aL~~GAdD 115 (584)
.+.+..++..+. . +.|.|.++--.|. .-|++.++.+... ..+|||.+-+-. .+.+.++++.||++
T Consensus 94 s~~t~~e~~~A~--~--GaDyv~~g~vf~t~sk~~~~~~~g~~~l~~~~~~~~~~iPviaiGGI~-~~nv~~~~~~Ga~g 168 (210)
T 3ceu_A 94 SCHSVEEVKNRK--H--FYDYVFMSPIYDSISKVNYYSTYTAEELREAQKAKIIDSKVMALGGIN-EDNLLEIKDFGFGG 168 (210)
T ss_dssp EECSHHHHHTTG--G--GSSEEEECCCC---------CCCCHHHHHHHHHTTCSSTTEEEESSCC-TTTHHHHHHTTCSE
T ss_pred ecCCHHHHHHHh--h--CCCEEEECCcCCCCCCCCCCCCCCHHHHHHHHHhcCCCCCEEEECCCC-HHHHHHHHHhCCCE
Confidence 567777776553 2 3799987754432 1367888887654 589999876554 66788899999998
Q ss_pred EEe
Q 007940 116 YLL 118 (584)
Q Consensus 116 YL~ 118 (584)
+-+
T Consensus 169 Vav 171 (210)
T 3ceu_A 169 AVV 171 (210)
T ss_dssp EEE
T ss_pred EEE
Confidence 743
No 236
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=32.66 E-value=16 Score=36.78 Aligned_cols=102 Identities=21% Similarity=0.283 Sum_probs=56.2
Q ss_pred CCCCCCCCCC---CEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHH
Q 007940 8 PRNDTFNPAG---LRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEH 84 (584)
Q Consensus 8 p~~~~f~p~g---mrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~ 84 (584)
.++-.|.+.+ |||.||-....-.+.+.+.|++.|++|.......+.+ ..+|+||+ -+.||. +++.
T Consensus 17 ~~~~~~~~~~~~~mki~iv~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~-------~~~DlvIv----lGGDGT-~L~a 84 (278)
T 1z0s_A 17 TENLYFQGGGGGGMRAAVVYKTDGHVKRIEEALKRLEVEVELFNQPSEEL-------ENFDFIVS----VGGDGT-ILRI 84 (278)
T ss_dssp -------------CEEEEEESSSTTHHHHHHHHHHTTCEEEEESSCCGGG-------GGSSEEEE----EECHHH-HHHH
T ss_pred cceEEEcCCCccceEEEEEeCCcHHHHHHHHHHHHCCCEEEEcccccccc-------CCCCEEEE----ECCCHH-HHHH
Confidence 3444566644 8898885422217788899999999887654322211 13688776 256774 3333
Q ss_pred HhccCC-CCEEEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHH
Q 007940 85 VGLEMD-LPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFR 135 (584)
Q Consensus 85 Ir~~~~-iPVIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlr 135 (584)
.+.... +||+-+.. |-.+|+. ++..+++..++.+++.
T Consensus 85 a~~~~~~~PilGIN~-------------G~lGFLt-~~~~~~~~~~l~~l~~ 122 (278)
T 1z0s_A 85 LQKLKRCPPIFGINT-------------GRVGLLT-HASPENFEVELKKAVE 122 (278)
T ss_dssp HTTCSSCCCEEEEEC-------------SSSCTTC-CBBTTBCHHHHHHHHH
T ss_pred HHHhCCCCcEEEECC-------------CCCcccc-ccCHHHHHHHHHHHHh
Confidence 332222 89987763 4455665 4566777777777664
No 237
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=32.50 E-value=3.8e+02 Score=26.59 Aligned_cols=63 Identities=14% Similarity=0.188 Sum_probs=40.0
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhccCCCCEEEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHH
Q 007940 64 YDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFR 135 (584)
Q Consensus 64 pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlr 135 (584)
.|++++--. .+.-|+-+++.+. ..+|||.. .. ....+.+..|..+++.. +.++|.+++.+++.
T Consensus 316 ad~~v~ps~-~E~~~~~~lEAma--~G~PvI~~-~~---~g~~e~i~~~~~g~l~~--d~~~la~~i~~ll~ 378 (416)
T 2x6q_A 316 SDVILQMSI-REGFGLTVTEAMW--KGKPVIGR-AV---GGIKFQIVDGETGFLVR--DANEAVEVVLYLLK 378 (416)
T ss_dssp CSEEEECCS-SCSSCHHHHHHHH--TTCCEEEE-SC---HHHHHHCCBTTTEEEES--SHHHHHHHHHHHHH
T ss_pred CCEEEECCC-cCCCccHHHHHHH--cCCCEEEc-cC---CCChhheecCCCeEEEC--CHHHHHHHHHHHHh
Confidence 355554322 1223555666553 56888753 32 33556677788899986 89999999988875
No 238
>2v5j_A 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; lyase, class II aldolase, homoprotocatechuate, aromatic DEGR aromatic hydrocarbons catabolism; 1.60A {Escherichia coli} PDB: 2v5k_A
Probab=32.48 E-value=3.2e+02 Score=27.13 Aligned_cols=97 Identities=12% Similarity=0.092 Sum_probs=58.4
Q ss_pred HHHHHHhCCC-eEEE--ECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc--cCCCCEEEEEcCCChHHHHh
Q 007940 33 LEKMLKKCSY-EVTT--CGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGL--EMDLPVIMMSVDGETSRVMK 107 (584)
Q Consensus 33 L~~lL~~~gy-~V~~--a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~--~~~iPVIvlSa~~d~~~~~~ 107 (584)
+++.|+. |. .+.. -....+.++.+... ++|.|++|++-...+--.+...++. ....++++=+...+...+..
T Consensus 30 ~k~~l~~-G~~~~gl~~~~~~p~~~e~a~~~--GaD~v~lDlEh~~~~~~~~~~~l~a~~~~~~~~~VRv~~~d~~di~~ 106 (287)
T 2v5j_A 30 FKAALKA-GRPQIGLWLGLSSSYSAELLAGA--GFDWLLIDGEHAPNNVQTVLTQLQAIAPYPSQPVVRPSWNDPVQIKQ 106 (287)
T ss_dssp HHHHHHT-TCCEEEEEECSCCHHHHHHHHTS--CCSEEEEESSSSSCCHHHHHHHHHHHTTSSSEEEEECSSSCHHHHHH
T ss_pred HHHHHHC-CCcEEEEEEECCCHHHHHHHHhC--CCCEEEEeCCCccchHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHH
Confidence 5566654 43 3332 22334555555543 4999999997544444444444432 23556666666667778889
Q ss_pred hhhcCCceEE-eCCCCHHHHHHHHHH
Q 007940 108 GVQHGACDYL-LKPIRMKELRNIWQH 132 (584)
Q Consensus 108 aL~~GAdDYL-~KP~~~~eL~~aI~~ 132 (584)
+++.|++..+ .|--+.++++.+++.
T Consensus 107 ~ld~ga~~ImlP~V~saeea~~~~~~ 132 (287)
T 2v5j_A 107 LLDVGTQTLLVPMVQNADEAREAVRA 132 (287)
T ss_dssp HHHTTCCEEEESCCCSHHHHHHHHHH
T ss_pred HHhCCCCEEEeCCCCCHHHHHHHHHH
Confidence 9999998754 444467776665554
No 239
>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A
Probab=32.14 E-value=99 Score=29.56 Aligned_cols=68 Identities=18% Similarity=0.267 Sum_probs=46.2
Q ss_pred CHHHHHHHHHhcCCCceEE-EEecCCC---CCCHHHHHHHHhccCCCCEEEEEcCCChHHHHhhhhcCCceEEe
Q 007940 49 LARDALSLLRERKDGYDIV-ISDVNMP---DMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLL 118 (584)
Q Consensus 49 ~~~eAL~~L~~~~~~pDLV-IlDi~MP---dmdGlELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~ 118 (584)
+..+..+.+.+. ++|.| +.|+.-. ...-++++++++....+|||+--.-.+.+.+.++++.||+..++
T Consensus 36 ~~~~~a~~~~~~--G~~~i~v~d~~~~~~~~~~~~~~i~~i~~~~~ipvi~~Ggi~~~~~~~~~l~~Gad~V~i 107 (247)
T 3tdn_A 36 LLRDWVVEVEKR--GAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLRGADKVSI 107 (247)
T ss_dssp EHHHHHHHHHHT--TCSEEEEEETTTTTCSSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHTTCSEECC
T ss_pred CHHHHHHHHHHc--CCCEEEEEecCcccCCCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCeeeh
Confidence 344555555543 25544 4566421 12237889999877799999887777888899999999887654
No 240
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=32.10 E-value=1.5e+02 Score=27.01 Aligned_cols=57 Identities=18% Similarity=0.204 Sum_probs=42.3
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHHhCCCe--E-EEECCHHHHHHHHHhcC--CCceEEEEecC
Q 007940 16 AGLRVLVVDDDLAWLKILEKMLKKCSYE--V-TTCGLARDALSLLRERK--DGYDIVISDVN 72 (584)
Q Consensus 16 ~gmrVLIVDDd~~~r~~L~~lL~~~gy~--V-~~a~~~~eAL~~L~~~~--~~pDLVIlDi~ 72 (584)
.+.+|..||-++...+..++.++..+.. + ....++.+.+..+.... ..||+|++|..
T Consensus 88 ~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~v~~~~~ 149 (225)
T 3tr6_A 88 KDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDLIYIDAD 149 (225)
T ss_dssp TTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEEEEECSC
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccEEEECCC
Confidence 3679999999999999999999887742 3 35667777666554211 34999999874
No 241
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=32.09 E-value=1.5e+02 Score=27.11 Aligned_cols=67 Identities=13% Similarity=0.156 Sum_probs=45.6
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCC--eEE-EECCHHHHHHHHHhcC--CCceEEEEecCCCCCCHHHHHHHH
Q 007940 17 GLRVLVVDDDLAWLKILEKMLKKCSY--EVT-TCGLARDALSLLRERK--DGYDIVISDVNMPDMDGFKLLEHV 85 (584)
Q Consensus 17 gmrVLIVDDd~~~r~~L~~lL~~~gy--~V~-~a~~~~eAL~~L~~~~--~~pDLVIlDi~MPdmdGlELL~~I 85 (584)
+.+|..||-++...+..++.++..|. .+. ...++.+.+..+.... ..+|+|++|.. ..+-.++++.+
T Consensus 94 ~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~v~~d~~--~~~~~~~l~~~ 165 (229)
T 2avd_A 94 DGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVAVVDAD--KENCSAYYERC 165 (229)
T ss_dssp TCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEEEECSC--STTHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCccEEEECCC--HHHHHHHHHHH
Confidence 56999999999999999999987764 233 4567777666554311 34999999864 22333445444
No 242
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=32.09 E-value=69 Score=34.02 Aligned_cols=53 Identities=26% Similarity=0.374 Sum_probs=27.7
Q ss_pred CCEEEEEeCCH---HHHHHHHHHHHhCCCeEEEECC---H----HHHHHHHHhcCCCceEEEEec
Q 007940 17 GLRVLVVDDDL---AWLKILEKMLKKCSYEVTTCGL---A----RDALSLLRERKDGYDIVISDV 71 (584)
Q Consensus 17 gmrVLIVDDd~---~~r~~L~~lL~~~gy~V~~a~~---~----~eAL~~L~~~~~~pDLVIlDi 71 (584)
|.||++||-|+ ...+.+...-...+..+..+.. . .++++.++. ..+|+||+|.
T Consensus 129 G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~~~~--~~~D~VIIDT 191 (433)
T 2xxa_A 129 KKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAKL--KFYDVLLVDT 191 (433)
T ss_dssp CCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHHHHH--TTCSEEEEEC
T ss_pred CCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHHHHh--CCCCEEEEEC
Confidence 66777777775 2222333333334444443321 2 233444432 2489999998
No 243
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=31.80 E-value=85 Score=33.01 Aligned_cols=93 Identities=22% Similarity=0.259 Sum_probs=52.8
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCH--HHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCC
Q 007940 16 AGLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLA--RDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGL-EMDLP 92 (584)
Q Consensus 16 ~gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~--~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~-~~~iP 92 (584)
.|..|+|||.++...+.++ ..|+.++. +++ .+.|..+.- ...|+||+-+.-+ ..-+.++..++. .++++
T Consensus 26 ~g~~vvvId~d~~~v~~~~----~~g~~vi~-GDat~~~~L~~agi--~~A~~viv~~~~~-~~n~~i~~~ar~~~p~~~ 97 (413)
T 3l9w_A 26 SGVKMVVLDHDPDHIETLR----KFGMKVFY-GDATRMDLLESAGA--AKAEVLINAIDDP-QTNLQLTEMVKEHFPHLQ 97 (413)
T ss_dssp TTCCEEEEECCHHHHHHHH----HTTCCCEE-SCTTCHHHHHHTTT--TTCSEEEECCSSH-HHHHHHHHHHHHHCTTCE
T ss_pred CCCCEEEEECCHHHHHHHH----hCCCeEEE-cCCCCHHHHHhcCC--CccCEEEECCCCh-HHHHHHHHHHHHhCCCCe
Confidence 3677888888887655443 45665543 444 234443322 2378888866321 122334444443 35667
Q ss_pred EEEEEcCCChHHHHhhhhcCCceEEe
Q 007940 93 VIMMSVDGETSRVMKGVQHGACDYLL 118 (584)
Q Consensus 93 VIvlSa~~d~~~~~~aL~~GAdDYL~ 118 (584)
||+-+. +........++||+..+.
T Consensus 98 Iiara~--~~~~~~~L~~~Gad~Vi~ 121 (413)
T 3l9w_A 98 IIARAR--DVDHYIRLRQAGVEKPER 121 (413)
T ss_dssp EEEEES--SHHHHHHHHHTTCSSCEE
T ss_pred EEEEEC--CHHHHHHHHHCCCCEEEC
Confidence 776553 345566777899987664
No 244
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=31.54 E-value=58 Score=31.84 Aligned_cols=53 Identities=15% Similarity=0.014 Sum_probs=36.5
Q ss_pred CCHHHHHHHHhccCCCCEEEEEcCCChHHHHhhhhc--CCceEEeCCCCHHHHHHHHHHHHH
Q 007940 76 MDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQH--GACDYLLKPIRMKELRNIWQHVFR 135 (584)
Q Consensus 76 mdGlELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~--GAdDYL~KP~~~~eL~~aI~~vlr 135 (584)
.-|+.+++.+. ..+|||.. ..+. ..+.+.. |..+++..| +.++|.+++.+++.
T Consensus 253 ~~~~~~~EAma--~G~PvI~s-~~~~---~~e~~~~~~~~~g~~~~~-d~~~l~~~i~~l~~ 307 (342)
T 2iuy_A 253 PGATVVSEAAV--SGTPVVGT-GNGC---LAEIVPSVGEVVGYGTDF-APDEARRTLAGLPA 307 (342)
T ss_dssp CCCHHHHHHHH--TTCCEEEC-CTTT---HHHHGGGGEEECCSSSCC-CHHHHHHHHHTSCC
T ss_pred CccHHHHHHHh--cCCCEEEc-CCCC---hHHHhcccCCCceEEcCC-CHHHHHHHHHHHHH
Confidence 34566777653 56888753 3322 4455666 778899999 99999998877653
No 245
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=31.27 E-value=64 Score=29.96 Aligned_cols=25 Identities=4% Similarity=0.194 Sum_probs=7.3
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEeCC
Q 007940 2 ENGFSSPRNDTFNPAGLRVLVVDDD 26 (584)
Q Consensus 2 ~~g~~~p~~~~f~p~gmrVLIVDDd 26 (584)
..+.-+.+...|.+...-|+.+-|+
T Consensus 2 ~~~~~~h~~~~~~~~rv~IittGde 26 (178)
T 2pjk_A 2 SHAHKKHKENAPKSLNFYVITISTS 26 (178)
T ss_dssp -----------CCCCEEEEEEECHH
T ss_pred CCchHHHHhcCCCCCEEEEEEeCcc
Confidence 3444444444554444455555653
No 246
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=31.12 E-value=50 Score=30.71 Aligned_cols=43 Identities=16% Similarity=0.200 Sum_probs=33.5
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEE
Q 007940 19 RVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVIS 69 (584)
Q Consensus 19 rVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIl 69 (584)
+|+|||--.-+...+.+.|++.|+++....+.++. .. +|.||+
T Consensus 4 ~I~iiD~g~~n~~si~~al~~~G~~~~v~~~~~~l----~~----~D~lil 46 (211)
T 4gud_A 4 NVVIIDTGCANISSVKFAIERLGYAVTISRDPQVV----LA----ADKLFL 46 (211)
T ss_dssp CEEEECCCCTTHHHHHHHHHHTTCCEEEECCHHHH----HH----CSEEEE
T ss_pred EEEEEECCCChHHHHHHHHHHCCCEEEEECCHHHH----hC----CCEEEE
Confidence 79999977666788899999999999888776542 22 577776
No 247
>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*
Probab=31.12 E-value=3.1e+02 Score=27.59 Aligned_cols=88 Identities=18% Similarity=0.035 Sum_probs=56.6
Q ss_pred HHHHHHHHHHhCCCeEE--EE---CCHHHHHHHHHhcCCCceEEEEecC---------------------CCCCCHHHHH
Q 007940 29 WLKILEKMLKKCSYEVT--TC---GLARDALSLLRERKDGYDIVISDVN---------------------MPDMDGFKLL 82 (584)
Q Consensus 29 ~r~~L~~lL~~~gy~V~--~a---~~~~eAL~~L~~~~~~pDLVIlDi~---------------------MPdmdGlELL 82 (584)
+.+.++.+-+..+.-|. .+ .+.++|..+.. . +.|.|++.-+ .-+....+.+
T Consensus 166 ~~~~i~~vr~~~~~Pv~vK~~~~~~~~~~a~~a~~-~--Gad~I~v~~~ggt~~~~~e~~r~~~~~~~~~~~g~~~~~~l 242 (349)
T 1p0k_A 166 ALKRIEQICSRVSVPVIVKEVGFGMSKASAGKLYE-A--GAAAVDIGGYGGTNFSKIENLRRQRQISFFNSWGISTAASL 242 (349)
T ss_dssp HHHHHHHHHHHCSSCEEEEEESSCCCHHHHHHHHH-H--TCSEEEEEC---------------CCGGGGTTCSCCHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHH-c--CCCEEEEcCCCCcchhhHHHhhcccchhhhhccCccHHHHH
Confidence 44556665555554333 22 35566554443 2 3788777421 1234567777
Q ss_pred HHHhcc-CCCCEEEEEcCCChHHHHhhhhcCCceEEeC
Q 007940 83 EHVGLE-MDLPVIMMSVDGETSRVMKGVQHGACDYLLK 119 (584)
Q Consensus 83 ~~Ir~~-~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~K 119 (584)
+.++.. ..+|||....-...+.+.+++.+||+...+=
T Consensus 243 ~~v~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~iG 280 (349)
T 1p0k_A 243 AEIRSEFPASTMIASGGLQDALDVAKAIALGASCTGMA 280 (349)
T ss_dssp HHHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHhcCCCeEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence 777544 4799998888888999999999999987643
No 248
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=30.47 E-value=2.5e+02 Score=24.45 Aligned_cols=68 Identities=19% Similarity=0.226 Sum_probs=44.9
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhCCC--eE-EEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHH
Q 007940 18 LRVLVVDDDLAWLKILEKMLKKCSY--EV-TTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHV 85 (584)
Q Consensus 18 mrVLIVDDd~~~r~~L~~lL~~~gy--~V-~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~I 85 (584)
.+|..||-++...+..+..++..+. .+ ....+..+.+..+......+|+|++|.-.-..+.-++++.+
T Consensus 68 ~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~~~~~~~~~~~~~~~l 138 (187)
T 2fhp_A 68 DKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLDPPYAKQEIVSQLEKM 138 (187)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCCGGGCCHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEECCCCCchhHHHHHHHH
Confidence 5899999999999999988877663 23 35567766554443222459999998532223445555555
No 249
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A
Probab=30.39 E-value=41 Score=32.12 Aligned_cols=82 Identities=12% Similarity=0.084 Sum_probs=48.6
Q ss_pred HHHhCCCeEEE-E--CCHHHHHHHHHhcCCCceEEEEecCCCCCC-------HHHHHHHHhccC-CCCEEEEEcCCChHH
Q 007940 36 MLKKCSYEVTT-C--GLARDALSLLRERKDGYDIVISDVNMPDMD-------GFKLLEHVGLEM-DLPVIMMSVDGETSR 104 (584)
Q Consensus 36 lL~~~gy~V~~-a--~~~~eAL~~L~~~~~~pDLVIlDi~MPdmd-------GlELL~~Ir~~~-~iPVIvlSa~~d~~~ 104 (584)
.+++.|..+.. + .+..+.++.+.......|.|+++-..|+.. +++.+++++... ++||++.- --..+.
T Consensus 108 ~i~~~g~~igv~~~p~t~~e~~~~~~~~~~~~d~vl~~sv~pg~~g~~~~~~~l~~i~~~~~~~~~~pi~v~G-GI~~~n 186 (228)
T 1h1y_A 108 SIKAKGMRPGVSLRPGTPVEEVFPLVEAENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKYPSLDIEVDG-GLGPST 186 (228)
T ss_dssp HHHHTTCEEEEEECTTSCGGGGHHHHHSSSCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCTTSEEEEES-SCSTTT
T ss_pred HHHHcCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEeecCCCCcccCCHHHHHHHHHHHHhcCCCCEEEEC-CcCHHH
Confidence 33445655542 3 233344554443100378999987777633 356666666554 77876554 444467
Q ss_pred HHhhhhcCCceEEe
Q 007940 105 VMKGVQHGACDYLL 118 (584)
Q Consensus 105 ~~~aL~~GAdDYL~ 118 (584)
+.+++++||+.++.
T Consensus 187 i~~~~~aGaD~vvv 200 (228)
T 1h1y_A 187 IDVAASAGANCIVA 200 (228)
T ss_dssp HHHHHHHTCCEEEE
T ss_pred HHHHHHcCCCEEEE
Confidence 77888889998875
No 250
>3s5p_A Ribose 5-phosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.30A {Giardia lamblia}
Probab=30.14 E-value=3.4e+02 Score=25.24 Aligned_cols=36 Identities=22% Similarity=0.318 Sum_probs=28.9
Q ss_pred CCCCCCEEEEEeCCH--HHHHHHHHHHHhCCCeEEEEC
Q 007940 13 FNPAGLRVLVVDDDL--AWLKILEKMLKKCSYEVTTCG 48 (584)
Q Consensus 13 f~p~gmrVLIVDDd~--~~r~~L~~lL~~~gy~V~~a~ 48 (584)
..|..|||.|--|+. ...+.|.+.|+..||+|.-++
T Consensus 17 ~~~~~MkIaIgsDhaG~~lK~~i~~~L~~~G~eV~D~G 54 (166)
T 3s5p_A 17 QGPGSMKVAFASDHGGRDLRMFLQQRASAHGYEVMDLG 54 (166)
T ss_dssp --CTTCEEEEEECGGGHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCCceEEEEEECchHHHHHHHHHHHHHHCCCEEEEcC
Confidence 447779999999997 567889999999999988543
No 251
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=30.04 E-value=2e+02 Score=24.36 Aligned_cols=50 Identities=16% Similarity=0.106 Sum_probs=20.8
Q ss_pred ceEEEEecCCCCCC-HHHHHHHHhccCCCCEEEEEcCCChHHHHhhhhcCCceEE
Q 007940 64 YDIVISDVNMPDMD-GFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYL 117 (584)
Q Consensus 64 pDLVIlDi~MPdmd-GlELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL 117 (584)
.|+||+-+. +.. -..++..++......||...... .......++|++..+
T Consensus 71 ~d~vi~~~~--~~~~n~~~~~~a~~~~~~~iia~~~~~--~~~~~l~~~G~~~vi 121 (141)
T 3llv_A 71 VSAVLITGS--DDEFNLKILKALRSVSDVYAIVRVSSP--KKKEEFEEAGANLVV 121 (141)
T ss_dssp CSEEEECCS--CHHHHHHHHHHHHHHCCCCEEEEESCG--GGHHHHHHTTCSEEE
T ss_pred CCEEEEecC--CHHHHHHHHHHHHHhCCceEEEEEcCh--hHHHHHHHcCCCEEE
Confidence 566666443 111 12233333333333444433322 333445567765333
No 252
>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens}
Probab=29.96 E-value=1.1e+02 Score=31.02 Aligned_cols=84 Identities=13% Similarity=0.094 Sum_probs=55.1
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEecCC--CCC-CHHHHHHHHhccCCCCEEEEEcCCCh-------------HHHHhhh
Q 007940 46 TCGLARDALSLLRERKDGYDIVISDVNM--PDM-DGFKLLEHVGLEMDLPVIMMSVDGET-------------SRVMKGV 109 (584)
Q Consensus 46 ~a~~~~eAL~~L~~~~~~pDLVIlDi~M--Pdm-dGlELL~~Ir~~~~iPVIvlSa~~d~-------------~~~~~aL 109 (584)
++.+.+++..+.+.-. |-|=++-.| ++. .+..+++.++....+||.+|.-...- +.+..+.
T Consensus 45 c~~s~~~a~~A~~gGA---dRIELc~~l~~GGlTPS~g~i~~a~~~~~ipV~vMIRPRgGdF~Ys~~E~~~M~~dI~~~~ 121 (287)
T 3iwp_A 45 CVDSVESAVNAERGGA---DRIELCSGLSEGGTTPSMGVLQVVKQSVQIPVFVMIRPRGGDFLYSDREIEVMKADIRLAK 121 (287)
T ss_dssp EESSHHHHHHHHHHTC---SEEEECBCGGGTCBCCCHHHHHHHHTTCCSCEEEECCSSSSCSCCCHHHHHHHHHHHHHHH
T ss_pred EeCCHHHHHHHHHhCC---CEEEECCCCCCCCCCCCHHHHHHHHHhcCCCeEEEEecCCCCcccCHHHHHHHHHHHHHHH
Confidence 6788888888877543 444444333 343 46888888877778999877643322 4677888
Q ss_pred hcCCceEEeC---C---CCHHHHHHHHHH
Q 007940 110 QHGACDYLLK---P---IRMKELRNIWQH 132 (584)
Q Consensus 110 ~~GAdDYL~K---P---~~~~eL~~aI~~ 132 (584)
++||++++.- | ++.+.++..+..
T Consensus 122 ~~GAdGvVfG~L~~dg~iD~~~~~~Li~~ 150 (287)
T 3iwp_A 122 LYGADGLVFGALTEDGHIDKELCMSLMAI 150 (287)
T ss_dssp HTTCSEEEECCBCTTSCBCHHHHHHHHHH
T ss_pred HcCCCEEEEeeeCCCCCcCHHHHHHHHHH
Confidence 9999998766 3 344455554443
No 253
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=29.91 E-value=1.2e+02 Score=27.74 Aligned_cols=114 Identities=18% Similarity=0.266 Sum_probs=63.7
Q ss_pred CCCCEEEEEeCCH-----H-HHHHHHHHHHhCCCeEEEEC---------------CH----HHHHHHHHhcCCCceEEEE
Q 007940 15 PAGLRVLVVDDDL-----A-WLKILEKMLKKCSYEVTTCG---------------LA----RDALSLLRERKDGYDIVIS 69 (584)
Q Consensus 15 p~gmrVLIVDDd~-----~-~r~~L~~lL~~~gy~V~~a~---------------~~----~eAL~~L~~~~~~pDLVIl 69 (584)
++.++|.|.-.-. . .++.+.+.|+..| .|.... +. ..-++.+++ .|+||.
T Consensus 9 ~~~~kVYLAGp~~~~~~~~~~~~~i~~~l~~~G-~V~~~~~~~p~~~~~g~~~~~~~~~i~~~d~~~i~~----aD~vva 83 (165)
T 2khz_A 9 QAPCSVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQDLNWLQQ----ADVVVA 83 (165)
T ss_dssp CCCCEEEEECCCSSCSHHHHHHHHHHHHHHHHS-EESGGGTTTTSSSCCSTTSTTCHHHHHHHHHHHHHH----CSEEEE
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHHhcC-CcccccccCchhhccccccccCHHHHHHHHHHHHHh----CCEEEE
Confidence 4567888884332 1 4578888898888 663100 11 112234443 689999
Q ss_pred ecCCCC-CCHHHHHHHHhccCCCCEEEEEcCCChHHHHhhhhcCCc---eEEeCCCCHHHHHHHHHHHHHh
Q 007940 70 DVNMPD-MDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGAC---DYLLKPIRMKELRNIWQHVFRK 136 (584)
Q Consensus 70 Di~MPd-mdGlELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAd---DYL~KP~~~~eL~~aI~~vlrr 136 (584)
++.-++ ..++|+--.. ....|||++..... .....++-.|.. .+-.+.++.++|...+...++.
T Consensus 84 ~~~~~d~Gt~~EiGyA~--algKPVi~l~~~~~-~~~~n~M~~g~~~~~~~~~~~y~~~el~~~l~~~~~~ 151 (165)
T 2khz_A 84 EVTQPSLGVGYELGRAV--ALGKPILCLFRPQS-GRVLSAMIRGAADGSRFQVWDYAEGEVETMLDRYFEA 151 (165)
T ss_dssp ECSSCCHHHHHHHHHHH--HTCSSEEEEECTTT-TCCCCHHHHHTCCSSSEEEEECCTTTHHHHHHHHHHT
T ss_pred ECCCCCCCHHHHHHHHH--HCCCEEEEEEcCCC-CCcchhhhcccCccceeEEEecCHHHHHHHHHHHHHh
Confidence 886222 1134544332 35789999975542 111122223332 2445555788888888887654
No 254
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=29.48 E-value=1.3e+02 Score=26.59 Aligned_cols=50 Identities=20% Similarity=0.195 Sum_probs=39.3
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEec
Q 007940 15 PAGLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDV 71 (584)
Q Consensus 15 p~gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi 71 (584)
.+|.+|.++..... ..+|+..+..+..+.+..+++.++... ..|+++++.
T Consensus 110 L~g~~i~~~~g~~~-----~~~l~~~~~~~~~~~~~~~~~~~l~~g--~~D~~~~~~ 159 (228)
T 2pyy_A 110 LPGKVVATTAGSTA-----ATYLREHHISVLEVPKIEEAYKALQTK--KADAVVFDA 159 (228)
T ss_dssp CTTCEEEEETTSHH-----HHHHHHTTCEEEEESSHHHHHHHHHTT--SSSEEEEEH
T ss_pred cCCCeEEEEcCcHH-----HHHHHHcCCceEecCCHHHHHHHHHcC--CCCEEEecH
Confidence 46789998887763 345556688888899999999999874 499999974
No 255
>2vws_A YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escherichia coli K-12 protein YFAU, 2-keto-3-deoxy SU aldolase, degradation of homoprotocatechuate; 1.39A {Escherichia coli} PDB: 2vwt_A
Probab=28.98 E-value=4.1e+02 Score=25.86 Aligned_cols=97 Identities=13% Similarity=0.151 Sum_probs=57.1
Q ss_pred HHHHHHhCCC-eEE--EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc--cCCCCEEEEEcCCChHHHHh
Q 007940 33 LEKMLKKCSY-EVT--TCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGL--EMDLPVIMMSVDGETSRVMK 107 (584)
Q Consensus 33 L~~lL~~~gy-~V~--~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~--~~~iPVIvlSa~~d~~~~~~ 107 (584)
+++.|+. |. .+. ......+.++.+... ++|.|++|++-.-.+--++...++. ....++++=+...+...+..
T Consensus 9 ~k~~l~~-g~~~~g~~~~~~~p~~~e~a~~~--GaD~v~lDlE~~~~~~~~~~~~~~a~~~~~~~~~VRv~~~~~~~i~~ 85 (267)
T 2vws_A 9 FKERLRK-GEVQIGLWLSSTTAYMAEIAATS--GYDWLLIDGEHAPNTIQDLYHQLQAVAPYASQPVIRPVEGSKPLIKQ 85 (267)
T ss_dssp HHHHHHT-TCCEEEEEECSCCHHHHHHHHTT--CCSEEEEETTTSCCCHHHHHHHHHHHTTSSSEEEEECSSCCHHHHHH
T ss_pred HHHHHHC-CCCEEEEEEeCCCHHHHHHHHhC--CCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHH
Confidence 5555554 43 222 222334455555543 4999999997544444444444432 23455655555667788889
Q ss_pred hhhcCCceEE-eCCCCHHHHHHHHHH
Q 007940 108 GVQHGACDYL-LKPIRMKELRNIWQH 132 (584)
Q Consensus 108 aL~~GAdDYL-~KP~~~~eL~~aI~~ 132 (584)
+++.|++..+ .|=-+.++++.+++.
T Consensus 86 ~l~~g~~~I~~P~V~s~ee~~~~~~~ 111 (267)
T 2vws_A 86 VLDIGAQTLLIPMVDTAEQARQVVSA 111 (267)
T ss_dssp HHHTTCCEEEECCCCSHHHHHHHHHH
T ss_pred HHHhCCCEEEeCCCCCHHHHHHHHHH
Confidence 9999998754 444567787666554
No 256
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=28.96 E-value=54 Score=30.52 Aligned_cols=59 Identities=31% Similarity=0.329 Sum_probs=38.7
Q ss_pred CCCCCCCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCc-eEEEEecC
Q 007940 12 TFNPAGLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGY-DIVISDVN 72 (584)
Q Consensus 12 ~f~p~gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~p-DLVIlDi~ 72 (584)
.+..++++|||.--.-.+-..+.+.|.+.|++|..+....+.+..+... .+ .++..|+.
T Consensus 16 ~~~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~--~~~~~~~~Dl~ 75 (236)
T 3e8x_A 16 NLYFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRER--GASDIVVANLE 75 (236)
T ss_dssp -----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHT--TCSEEEECCTT
T ss_pred ccCcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHhC--CCceEEEcccH
Confidence 4556789999999998888888888888899988665444444444432 25 56666665
No 257
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=28.87 E-value=1.2e+02 Score=30.12 Aligned_cols=59 Identities=12% Similarity=0.104 Sum_probs=30.0
Q ss_pred CCCEEEEEeCCHH---HHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCC
Q 007940 16 AGLRVLVVDDDLA---WLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPDMD 77 (584)
Q Consensus 16 ~gmrVLIVDDd~~---~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmd 77 (584)
.|.+|++++-|.. ..+.+..+.+..|..+....+..+....+... ..||+||+| .++.+
T Consensus 133 ~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~-~~~dlvIiD--T~G~~ 194 (296)
T 2px0_A 133 KHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELF-SEYDHVFVD--TAGRN 194 (296)
T ss_dssp TCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHG-GGSSEEEEE--CCCCC
T ss_pred cCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHh-cCCCEEEEe--CCCCC
Confidence 3567888877652 22334444444443332233333333333332 348999999 45544
No 258
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=28.65 E-value=1.2e+02 Score=28.71 Aligned_cols=58 Identities=7% Similarity=0.000 Sum_probs=37.4
Q ss_pred HHHHHHHHhcC--CCceEEEEecCC-----CCCCHHHHHHHHhccCCCCEEEEEcCCChHHHHhh
Q 007940 51 RDALSLLRERK--DGYDIVISDVNM-----PDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKG 108 (584)
Q Consensus 51 ~eAL~~L~~~~--~~pDLVIlDi~M-----PdmdGlELL~~Ir~~~~iPVIvlSa~~d~~~~~~a 108 (584)
..+++.+++.- ..||+||+|--. --.+--++++.|...+.---|++|++.......++
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e~ 170 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDL 170 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHHh
Confidence 44555454432 459999999642 22455567777776665556778988877766654
No 259
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}
Probab=28.46 E-value=1.4e+02 Score=30.30 Aligned_cols=107 Identities=12% Similarity=0.065 Sum_probs=60.8
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHHhCCCeEEE-ECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCCEE
Q 007940 16 AGLRVLVVDDDLAWLKILEKMLKKCSYEVTT-CGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVI 94 (584)
Q Consensus 16 ~gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~-a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVI 94 (584)
+.+||.||-=-......+...+...+++++. +....+..+.+.+.-..+ -+..| ++.+-..+.+-+|
T Consensus 25 ~~irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~~~~-~~~~~-----------~~~ll~~~~vD~V 92 (361)
T 3u3x_A 25 DELRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAVYADA-RRIAT-----------AEEILEDENIGLI 92 (361)
T ss_dssp -CCEEEEECCCSTTHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHSSSC-CEESC-----------HHHHHTCTTCCEE
T ss_pred cCcEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcCCHHHHHHHHHHcCCC-cccCC-----------HHHHhcCCCCCEE
Confidence 4689999996544434445555556788663 333333333333321111 11212 1233233455566
Q ss_pred EEEcC--CChHHHHhhhhcCCceEEeCCC--CHHHHHHHHHHHH
Q 007940 95 MMSVD--GETSRVMKGVQHGACDYLLKPI--RMKELRNIWQHVF 134 (584)
Q Consensus 95 vlSa~--~d~~~~~~aL~~GAdDYL~KP~--~~~eL~~aI~~vl 134 (584)
+++.. ...+.+.+|+++|..=|+-||+ +.++..+.++.+-
T Consensus 93 ~I~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~ 136 (361)
T 3u3x_A 93 VSAAVSSERAELAIRAMQHGKDVLVDKPGMTSFDQLAKLRRVQA 136 (361)
T ss_dssp EECCCHHHHHHHHHHHHHTTCEEEEESCSCSSHHHHHHHHHHHH
T ss_pred EEeCChHHHHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHHH
Confidence 66543 4567788999999998999997 5667666666543
No 260
>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2
Probab=28.02 E-value=36 Score=32.28 Aligned_cols=55 Identities=13% Similarity=0.059 Sum_probs=35.4
Q ss_pred CceEEEEecCCCCCC-------HHHHHHHHhccC-----CCCEEEEEcCCChHHHHhhhhcCCceEEe
Q 007940 63 GYDIVISDVNMPDMD-------GFKLLEHVGLEM-----DLPVIMMSVDGETSRVMKGVQHGACDYLL 118 (584)
Q Consensus 63 ~pDLVIlDi~MPdmd-------GlELL~~Ir~~~-----~iPVIvlSa~~d~~~~~~aL~~GAdDYL~ 118 (584)
..|.|+++-..|+.. +++.+++++... ++|+++. .--..+.+.+++++||+.+++
T Consensus 140 ~~d~vl~~~~~pg~~g~~~~~~~~~~i~~l~~~~~~~~~~~pi~v~-GGI~~~n~~~~~~aGad~vvv 206 (230)
T 1rpx_A 140 AVDLVLIMSVNPGFGGQSFIESQVKKISDLRKICAERGLNPWIEVD-GGVGPKNAYKVIEAGANALVA 206 (230)
T ss_dssp TCSEEEEESSCTTCSSCCCCTTHHHHHHHHHHHHHHHTCCCEEEEE-SSCCTTTHHHHHHHTCCEEEE
T ss_pred hCCEEEEEEEcCCCCCccccHHHHHHHHHHHHHHHhcCCCceEEEE-CCCCHHHHHHHHHcCCCEEEE
Confidence 368888887766543 345555554322 6776654 444466777788999998764
No 261
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=27.97 E-value=1e+02 Score=32.57 Aligned_cols=65 Identities=17% Similarity=0.166 Sum_probs=44.4
Q ss_pred HHHHHHHHhcCCCceEEEEecCCCCCC-HHHHHHHHhccCCCCEEEEEcCCChHHHHhhhhcCCceEEe
Q 007940 51 RDALSLLRERKDGYDIVISDVNMPDMD-GFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLL 118 (584)
Q Consensus 51 ~eAL~~L~~~~~~pDLVIlDi~MPdmd-GlELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~ 118 (584)
.+.++.+.+.. +|+|++|.....-. -.+++++++....+|||+=. -...+.+..+.++||+..++
T Consensus 146 ~e~~~~lveaG--vdvIvldta~G~~~~~~e~I~~ik~~~~i~Vi~g~-V~t~e~A~~a~~aGAD~I~v 211 (400)
T 3ffs_A 146 IERAKLLVEAG--VDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGN-VVTEEATKELIENGADGIKV 211 (400)
T ss_dssp CHHHHHHHHHT--CSEEEECCSCCSBHHHHHHHHHHHTTCCCEEEEEE-ECSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHcC--CCEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEee-cCCHHHHHHHHHcCCCEEEE
Confidence 45555555543 89999997643222 26778888765578887522 24567788999999998877
No 262
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=27.76 E-value=3.1e+02 Score=25.84 Aligned_cols=78 Identities=19% Similarity=0.246 Sum_probs=49.6
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCCe--EE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh-ccCCCC
Q 007940 17 GLRVLVVDDDLAWLKILEKMLKKCSYE--VT-TCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVG-LEMDLP 92 (584)
Q Consensus 17 gmrVLIVDDd~~~r~~L~~lL~~~gy~--V~-~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir-~~~~iP 92 (584)
+.+|..||-++...+..+..++..|.. |. ...++.+.+..+.. ...||+|++|...+ +-..+++.+. .-.+--
T Consensus 88 ~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~-~~~fD~V~~d~~~~--~~~~~l~~~~~~LkpGG 164 (248)
T 3tfw_A 88 DGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGE-CPAFDLIFIDADKP--NNPHYLRWALRYSRPGT 164 (248)
T ss_dssp TCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCS-CCCCSEEEECSCGG--GHHHHHHHHHHTCCTTC
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCC-CCCeEEEEECCchH--HHHHHHHHHHHhcCCCe
Confidence 579999999999999999999887742 33 56666665543321 12599999987432 2234455542 222223
Q ss_pred EEEEE
Q 007940 93 VIMMS 97 (584)
Q Consensus 93 VIvlS 97 (584)
+|++.
T Consensus 165 ~lv~~ 169 (248)
T 3tfw_A 165 LIIGD 169 (248)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 55554
No 263
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2
Probab=27.70 E-value=85 Score=30.39 Aligned_cols=82 Identities=11% Similarity=0.059 Sum_probs=51.9
Q ss_pred HHHhCCCeEEEEC---CHHHHHHHHHhcCCCceEEEEecCCCCCCH-------HHHHHHHhccC-CCCEEEEEcCCChHH
Q 007940 36 MLKKCSYEVTTCG---LARDALSLLRERKDGYDIVISDVNMPDMDG-------FKLLEHVGLEM-DLPVIMMSVDGETSR 104 (584)
Q Consensus 36 lL~~~gy~V~~a~---~~~eAL~~L~~~~~~pDLVIlDi~MPdmdG-------lELL~~Ir~~~-~iPVIvlSa~~d~~~ 104 (584)
.+++.|..+..+- +..+.++.+... ..+|+|++=---|+..| ++-+++++... +++ |.+.+--..+.
T Consensus 109 ~i~~~G~k~gvalnp~tp~~~~~~~l~~-g~~D~VlvmsV~pGf~gq~f~~~~l~ki~~lr~~~~~~~-I~VdGGI~~~t 186 (227)
T 1tqx_A 109 EIRDNNLWCGISIKPKTDVQKLVPILDT-NLINTVLVMTVEPGFGGQSFMHDMMGKVSFLRKKYKNLN-IQVDGGLNIET 186 (227)
T ss_dssp HHHTTTCEEEEEECTTSCGGGGHHHHTT-TCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCTTCE-EEEESSCCHHH
T ss_pred HHHHcCCeEEEEeCCCCcHHHHHHHhhc-CCcCEEEEeeeccCCCCcccchHHHHHHHHHHHhccCCe-EEEECCCCHHH
Confidence 6677887776543 334445544431 13788877555576554 45556665433 444 45667777889
Q ss_pred HHhhhhcCCceEEeC
Q 007940 105 VMKGVQHGACDYLLK 119 (584)
Q Consensus 105 ~~~aL~~GAdDYL~K 119 (584)
+.++.++||+-++.=
T Consensus 187 i~~~~~aGAd~~V~G 201 (227)
T 1tqx_A 187 TEISASHGANIIVAG 201 (227)
T ss_dssp HHHHHHHTCCEEEES
T ss_pred HHHHHHcCCCEEEEe
Confidence 999999999988753
No 264
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=27.65 E-value=1e+02 Score=33.32 Aligned_cols=64 Identities=13% Similarity=0.138 Sum_probs=45.1
Q ss_pred HHHHHHHhcCCCceEEEEecCCCCCC-HHHHHHHHhcc-CCCCEEEEEcCCChHHHHhhhhcCCceEEe
Q 007940 52 DALSLLRERKDGYDIVISDVNMPDMD-GFKLLEHVGLE-MDLPVIMMSVDGETSRVMKGVQHGACDYLL 118 (584)
Q Consensus 52 eAL~~L~~~~~~pDLVIlDi~MPdmd-GlELL~~Ir~~-~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~ 118 (584)
+..+.+.+. ++|+|.+|...+... -++++++++.. +++||++- .-...+.+..+.++||+..++
T Consensus 234 ~~a~~l~~a--G~d~I~id~a~g~~~~~~~~i~~ir~~~p~~~Vi~g-~v~t~e~a~~l~~aGaD~I~V 299 (496)
T 4fxs_A 234 ERVKALVEA--GVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGG-NVATAEGARALIEAGVSAVKV 299 (496)
T ss_dssp HHHHHHHHT--TCSEEEEECSCTTSHHHHHHHHHHHHHCTTCCEEEE-EECSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHhc--cCceEEeccccccchHHHHHHHHHHHHCCCceEEEc-ccCcHHHHHHHHHhCCCEEEE
Confidence 444444443 489999999877543 35778888655 47888773 335567788999999998875
No 265
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=27.44 E-value=1.1e+02 Score=29.12 Aligned_cols=64 Identities=13% Similarity=0.136 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhCCCeEEEECC-----HHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCCEEEEEcC
Q 007940 29 WLKILEKMLKKCSYEVTTCGL-----ARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVD 99 (584)
Q Consensus 29 ~r~~L~~lL~~~gy~V~~a~~-----~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVIvlSa~ 99 (584)
+...+++.+++.||.+..+.. ..+.++.+... .+|.||+--... +. +.++.+.. .+|||++...
T Consensus 29 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~--~vdgiIi~~~~~--~~-~~~~~~~~--~iPvV~i~~~ 97 (289)
T 3k9c_A 29 LVEQIYAAATRRGYDVMLSAVAPSRAEKVAVQALMRE--RCEAAILLGTRF--DT-DELGALAD--RVPALVVARA 97 (289)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEBTTBCHHHHHHHHTTT--TEEEEEEETCCC--CH-HHHHHHHT--TSCEEEESSC
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHhC--CCCEEEEECCCC--CH-HHHHHHHc--CCCEEEEcCC
Confidence 445667778889998775432 24455555443 489888854322 22 56666643 8999988543
No 266
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}
Probab=27.29 E-value=2.5e+02 Score=28.21 Aligned_cols=109 Identities=11% Similarity=0.191 Sum_probs=61.7
Q ss_pred CCCEEEEEeCCHHHHHHHHHHH-HhCCCeEEE-ECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCCE
Q 007940 16 AGLRVLVVDDDLAWLKILEKML-KKCSYEVTT-CGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPV 93 (584)
Q Consensus 16 ~gmrVLIVDDd~~~r~~L~~lL-~~~gy~V~~-a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPV 93 (584)
+.+||.||---..-+..+..+. +..+++++. +....+..+.+.+.- .+.+-..+ +--+++ ..+.+-+
T Consensus 22 ~~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~-g~~~~~~~------~~~~ll----~~~~~D~ 90 (357)
T 3ec7_A 22 MTLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDKY-AIEAKDYN------DYHDLI----NDKDVEV 90 (357)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHHHH-TCCCEEES------SHHHHH----HCTTCCE
T ss_pred CeeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHh-CCCCeeeC------CHHHHh----cCCCCCE
Confidence 4689999999877666666666 334677663 433333333333211 11111111 212222 2334445
Q ss_pred EEEEcC--CChHHHHhhhhcCCceEEeCCC--CHHHHHHHHHHHHH
Q 007940 94 IMMSVD--GETSRVMKGVQHGACDYLLKPI--RMKELRNIWQHVFR 135 (584)
Q Consensus 94 IvlSa~--~d~~~~~~aL~~GAdDYL~KP~--~~~eL~~aI~~vlr 135 (584)
|+++.. ...+.+..|+++|..=|+-||+ +.++..+.++.+-+
T Consensus 91 V~i~tp~~~h~~~~~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~ 136 (357)
T 3ec7_A 91 VIITASNEAHADVAVAALNANKYVFCEKPLAVTAADCQRVIEAEQK 136 (357)
T ss_dssp EEECSCGGGHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHH
T ss_pred EEEcCCcHHHHHHHHHHHHCCCCEEeecCccCCHHHHHHHHHHHHH
Confidence 555443 4567788999999988999997 56676666665443
No 267
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=26.97 E-value=1.3e+02 Score=31.51 Aligned_cols=56 Identities=18% Similarity=0.135 Sum_probs=39.1
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhCC---C------eE-EEECCHHHHHHHHHhcCCCceEEEEecCC
Q 007940 18 LRVLVVDDDLAWLKILEKMLKKCS---Y------EV-TTCGLARDALSLLRERKDGYDIVISDVNM 73 (584)
Q Consensus 18 mrVLIVDDd~~~r~~L~~lL~~~g---y------~V-~~a~~~~eAL~~L~~~~~~pDLVIlDi~M 73 (584)
-+|.+||=++.+.+..++.+...+ + .+ +...++.+.++.+.+....||+||+|.--
T Consensus 212 ~~Vt~VEID~~vie~Ar~~~~~l~~~~l~dp~~~rv~vi~~Da~~~L~~~~~~~~~fDvII~D~~d 277 (364)
T 2qfm_A 212 KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLTA 277 (364)
T ss_dssp SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTCCEEEEEEECCS
T ss_pred CEEEEEECCHHHHHHHHHHHHHhccccccccCCCcEEEEECcHHHHHHhhhccCCCceEEEECCCC
Confidence 589999999999999998875321 1 12 35678887777553223459999999855
No 268
>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*
Probab=26.96 E-value=70 Score=35.36 Aligned_cols=63 Identities=21% Similarity=0.248 Sum_probs=42.2
Q ss_pred HHHHHHHhcCCCceEEEEecCCCCCC-HHHHHHHHhcc-CCCCEEEEEcCCChHHHHhhhhcCCceEE
Q 007940 52 DALSLLRERKDGYDIVISDVNMPDMD-GFKLLEHVGLE-MDLPVIMMSVDGETSRVMKGVQHGACDYL 117 (584)
Q Consensus 52 eAL~~L~~~~~~pDLVIlDi~MPdmd-GlELL~~Ir~~-~~iPVIvlSa~~d~~~~~~aL~~GAdDYL 117 (584)
+-..+|.+. ..|+|++|..--... -++++++|+.. ++++||. -.-...+.+...+++||+...
T Consensus 284 eR~~aLv~A--GvD~iviD~ahGhs~~v~~~i~~ik~~~p~~~via-GNVaT~e~a~~Li~aGAD~vk 348 (556)
T 4af0_A 284 DRLKLLAEA--GLDVVVLDSSQGNSVYQIEFIKWIKQTYPKIDVIA-GNVVTREQAAQLIAAGADGLR 348 (556)
T ss_dssp HHHHHHHHT--TCCEEEECCSCCCSHHHHHHHHHHHHHCTTSEEEE-EEECSHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHhc--CCcEEEEeccccccHHHHHHHHHHHhhCCcceEEe-ccccCHHHHHHHHHcCCCEEe
Confidence 334444443 489999998654433 36778888654 5676654 344666778888899998764
No 269
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=26.93 E-value=1.4e+02 Score=24.02 Aligned_cols=54 Identities=24% Similarity=0.250 Sum_probs=36.7
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHHhCC-CeEEEECCHHHHHHHHHhcCCCceEEEEecC
Q 007940 16 AGLRVLVVDDDLAWLKILEKMLKKCS-YEVTTCGLARDALSLLRERKDGYDIVISDVN 72 (584)
Q Consensus 16 ~gmrVLIVDDd~~~r~~L~~lL~~~g-y~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~ 72 (584)
.+++|+|+-- -.+-..+...|...| ++|..+....+.++.+.. .....+..|+.
T Consensus 4 ~~~~v~I~G~-G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~--~~~~~~~~d~~ 58 (118)
T 3ic5_A 4 MRWNICVVGA-GKIGQMIAALLKTSSNYSVTVADHDLAALAVLNR--MGVATKQVDAK 58 (118)
T ss_dssp TCEEEEEECC-SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHT--TTCEEEECCTT
T ss_pred CcCeEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHh--CCCcEEEecCC
Confidence 3579999988 667777777777778 888766655555555553 23566666654
No 270
>2zxj_A Transcriptional regulatory protein WALR; two-component system, YYCG, response regulator, helix-turn-H motif, DNA-binding domain; 1.87A {Staphylococcus aureus} PDB: 2d1v_A
Probab=26.76 E-value=7.8 Score=34.06 Aligned_cols=73 Identities=15% Similarity=0.214 Sum_probs=42.2
Q ss_pred cccchhhHHhhhcccccCCCCCCCCCCcccccccccchhHHHHHHHHHHHhcccccCHHHHHhhhCCCCCchHHHHhhhH
Q 007940 170 TGEDLTSVRKRKDAENRHDDRDCGDASSTKKARVVWSIDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQ 249 (584)
Q Consensus 170 ~gedl~~~~~Rk~~~~~~~d~~~~~~ss~KK~rvvws~eLhqkFv~av~~iG~s~~~Pk~Il~~m~v~~Lt~~~V~sHlq 249 (584)
...++.....++.+...+..+. .+.++ .++...|+++.++ ..+.+.|++. .|.....+..+
T Consensus 15 ~~g~l~ld~~~~~v~~~g~~i~----Lt~~E------~~lL~~L~~~~g~----vvsre~L~~~---vWg~~~~~~~~-- 75 (120)
T 2zxj_A 15 TIKDIVIYPDAYSIKKRGEDIE----LTHRE------FELFHYLSKHMGQ----VMTREHLLQT---VWGYDYFGDVR-- 75 (120)
T ss_dssp EETTEEEEGGGTEEEETTEEEC----CCHHH------HHHHHHHHTTTTC----CBCHHHHHHH---HHCTTCCSCTH--
T ss_pred EEcCEEEECCCCEEEECCEEEE----cCHHH------HHHHHHHHhCCCc----eEcHHHHHHH---hcCCCCCCCCc--
Confidence 3344444444444444332222 45555 5666777766664 8889999844 46554444442
Q ss_pred HHHHHHHhhhhh
Q 007940 250 KYRLYLTRLQKD 261 (584)
Q Consensus 250 kyr~~~~RL~~~ 261 (584)
..+.+++||+++
T Consensus 76 ~l~v~I~rLRkK 87 (120)
T 2zxj_A 76 TVDVTIRRLREK 87 (120)
T ss_dssp HHHHHHHHHHHH
T ss_pred ChHHHHHHHHHH
Confidence 367777888887
No 271
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Probab=26.71 E-value=82 Score=31.92 Aligned_cols=56 Identities=11% Similarity=0.033 Sum_probs=44.6
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhccC--CCCEEEEEcCCChHHHHhhhhcCCceEEeCC
Q 007940 64 YDIVISDVNMPDMDGFKLLEHVGLEM--DLPVIMMSVDGETSRVMKGVQHGACDYLLKP 120 (584)
Q Consensus 64 pDLVIlDi~MPdmdGlELL~~Ir~~~--~iPVIvlSa~~d~~~~~~aL~~GAdDYL~KP 120 (584)
.++|.+|+.- .--..+++++++... .+||++=-+-.+.+.+.+++++||+..++--
T Consensus 200 ~~lV~LD~~~-~~v~~e~V~~I~~~~~~~iPV~vGGGIrs~Eda~~ll~aGAD~VVVGS 257 (286)
T 3vk5_A 200 FHMVYLYSRN-EHVPPEVVRHFRKGLGPDQVLFVSGNVRSGRQVTEYLDSGADYVGFAG 257 (286)
T ss_dssp CSEEEEECSS-SCCCHHHHHHHHHHSCTTCEEEEESSCCSHHHHHHHHHTTCSEEEESG
T ss_pred CCEEEEcCCC-CcCCHHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHHcCCCEEEECc
Confidence 5799999854 333468899987665 7999877777888999999999999988653
No 272
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=26.47 E-value=1.2e+02 Score=27.66 Aligned_cols=43 Identities=14% Similarity=0.141 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhCCCeEE---EECCHHHHHH-HHHh--cCCCceEEEEec
Q 007940 29 WLKILEKMLKKCSYEVT---TCGLARDALS-LLRE--RKDGYDIVISDV 71 (584)
Q Consensus 29 ~r~~L~~lL~~~gy~V~---~a~~~~eAL~-~L~~--~~~~pDLVIlDi 71 (584)
....|..+|++.|++|. ++.+..+.+. .+.. ....+|+||+-=
T Consensus 41 ng~~L~~~L~~~G~~v~~~~iV~Dd~~~i~~al~~~~a~~~~DlVittG 89 (178)
T 3iwt_A 41 SGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTG 89 (178)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEES
T ss_pred hHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEecC
Confidence 45678888888898765 4444433332 2321 112367777643
No 273
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=26.41 E-value=1.4e+02 Score=29.88 Aligned_cols=73 Identities=26% Similarity=0.334 Sum_probs=0.0
Q ss_pred CCEEEEEeCC----HHHHHHHHHHHHhCCCeEEEECCHH-----------------------------------------
Q 007940 17 GLRVLVVDDD----LAWLKILEKMLKKCSYEVTTCGLAR----------------------------------------- 51 (584)
Q Consensus 17 gmrVLIVDDd----~~~r~~L~~lL~~~gy~V~~a~~~~----------------------------------------- 51 (584)
.||||++-.. ..-...|...|.+.|++|..++...
T Consensus 15 ~MrIl~~~~~~~gh~~~~~~La~~L~~~GheV~v~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (398)
T 4fzr_A 15 HMRILVIAGCSEGFVMPLVPLSWALRAAGHEVLVAASENMGPTVTGAGLPFAPTCPSLDMPEVLSWDREGNRTTMPREEK 94 (398)
T ss_dssp CCEEEEECCSSHHHHGGGHHHHHHHHHTTCEEEEEEEGGGHHHHHHTTCCEEEEESSCCHHHHHSBCTTSCBCCCCSSHH
T ss_pred ceEEEEEcCCCcchHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHhCCCeeEecCCccchHhhhhhhccCcccccccchh
Q ss_pred -------------------HHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCCEEEEE
Q 007940 52 -------------------DALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMS 97 (584)
Q Consensus 52 -------------------eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVIvlS 97 (584)
+..+.+++.+ ||+|+.|. ...-|.-+.+.++ +|+|.+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--pDlVv~d~--~~~~~~~~a~~~g----iP~v~~~ 151 (398)
T 4fzr_A 95 PLLEHIGRGYGRLVLRMRDEALALAERWK--PDLVLTET--YSLTGPLVAATLG----IPWIEQS 151 (398)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CSEEEEET--TCTHHHHHHHHHT----CCEEEEC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCEEEECc--cccHHHHHHHhhC----CCEEEec
No 274
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=26.23 E-value=1.8e+02 Score=27.73 Aligned_cols=64 Identities=14% Similarity=0.202 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhCCCeEEEECC-----HHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCCEEEEEc
Q 007940 29 WLKILEKMLKKCSYEVTTCGL-----ARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSV 98 (584)
Q Consensus 29 ~r~~L~~lL~~~gy~V~~a~~-----~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVIvlSa 98 (584)
+...+++.+++.||.+..+.. ..+.++.+.... +|-||+--..... +.++.+. ...+|||++-.
T Consensus 28 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~--vdGiIi~~~~~~~---~~~~~l~-~~~iPvV~~~~ 96 (294)
T 3qk7_A 28 MISWIGIELGKRGLDLLLIPDEPGEKYQSLIHLVETRR--VDALIVAHTQPED---FRLQYLQ-KQNFPFLALGR 96 (294)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECTTCCCHHHHHHHHHTC--CSEEEECSCCSSC---HHHHHHH-HTTCCEEEESC
T ss_pred HHHHHHHHHHHCCCEEEEEeCCChhhHHHHHHHHHcCC--CCEEEEeCCCCCh---HHHHHHH-hCCCCEEEECC
Confidence 445567778889998775432 235566666543 8888875433222 4555553 34789998754
No 275
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=26.12 E-value=1.5e+02 Score=28.39 Aligned_cols=66 Identities=14% Similarity=0.044 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHhCCCeEEEECCH------HHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCCEEEEEcC
Q 007940 28 AWLKILEKMLKKCSYEVTTCGLA------RDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVD 99 (584)
Q Consensus 28 ~~r~~L~~lL~~~gy~V~~a~~~------~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVIvlSa~ 99 (584)
.+...+++.+++.||.+..+... .+.++.+... .+|-||+--..... -+.++.+.. .+|||++...
T Consensus 32 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~--~vdgiI~~~~~~~~--~~~~~~l~~--~iPvV~i~~~ 103 (303)
T 3kke_A 32 DMFSGVQMAASGHSTDVLLGQIDAPPRGTQQLSRLVSEG--RVDGVLLQRREDFD--DDMLAAVLE--GVPAVTINSR 103 (303)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECCSTTHHHHHHHHHHHSC--SSSEEEECCCTTCC--HHHHHHHHT--TSCEEEESCC
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhC--CCcEEEEecCCCCc--HHHHHHHhC--CCCEEEECCc
Confidence 45667788888999988755432 2345555443 48888874332221 115666654 8999988543
No 276
>2al1_A Enolase 1, 2-phospho-D-; beta barrel, lyase; HET: PEP 2PG; 1.50A {Saccharomyces cerevisiae} SCOP: c.1.11.1 d.54.1.1 PDB: 1ebg_A 1ebh_A* 1one_A* 2one_A* 1p48_A* 1p43_A* 1l8p_A 4enl_A 1nel_A 1els_A 3enl_A 5enl_A* 6enl_A 7enl_A* 2al2_A* 2al2_B* 2xh7_A* 2xgz_A* 2xh2_A* 2xh4_A* ...
Probab=25.87 E-value=83 Score=33.53 Aligned_cols=97 Identities=16% Similarity=0.219 Sum_probs=61.2
Q ss_pred eCCHHHHHHHHHHHHhCCC--eEE----EEC------------------------CHHHHHHHHHhcCCCceEEEEecCC
Q 007940 24 DDDLAWLKILEKMLKKCSY--EVT----TCG------------------------LARDALSLLRERKDGYDIVISDVNM 73 (584)
Q Consensus 24 DDd~~~r~~L~~lL~~~gy--~V~----~a~------------------------~~~eAL~~L~~~~~~pDLVIlDi~M 73 (584)
+++....+.+++.++..|| .+. .+. +..++++.+.+.-..++++.+.--+
T Consensus 219 ~~~~~~l~~i~~ai~~~G~~g~v~l~vD~aase~~~n~~y~~~~~~~~~~~~~~~t~~eai~~~~~~l~~y~i~~iEdPl 298 (436)
T 2al1_A 219 QTAEEALDLIVDAIKAAGHDGKVKIGLDCASSEFFKDGKYDLDFKNPNSDKSKWLTGPQLADLYHSLMKRYPIVSIEDPF 298 (436)
T ss_dssp SCHHHHHHHHHHHHHHHTCTTTCEEEEECCGGGGEETTEECTTTTCTTCCGGGCBCHHHHHHHHHHHHHHSCEEEEECCS
T ss_pred cCHHHHHHHHHHHHHHcCCCcceEEEEechhhhhccCCceEEecccccccccccCCHHHHHHHHHHHHHhCCcEEEECCC
Confidence 4566777888888876665 322 210 4567766544321237888887666
Q ss_pred CCCCHHHHHHHHhccCCCCEEEEEcCC---ChHHHHhhhhcCCceE-EeCCCCH
Q 007940 74 PDMDGFKLLEHVGLEMDLPVIMMSVDG---ETSRVMKGVQHGACDY-LLKPIRM 123 (584)
Q Consensus 74 PdmdGlELL~~Ir~~~~iPVIvlSa~~---d~~~~~~aL~~GAdDY-L~KP~~~ 123 (584)
+.-| ++-.++++....+||+ .... ....+.++++.||+++ ++|+-..
T Consensus 299 ~~dD-~~g~~~l~~~~~ipI~--gDE~~vt~~~~~~~~i~~~a~d~i~ikv~qi 349 (436)
T 2al1_A 299 AEDD-WEAWSHFFKTAGIQIV--ADDLTVTNPKRIATAIEKKAADALLLKVNQI 349 (436)
T ss_dssp CTTC-HHHHHHHHTTCCSEEE--ESTTTTTCHHHHHHHHHTTCCSEEEECHHHH
T ss_pred CCcC-HHHHHHHHhcCCCeEE--ECCcccCCHHHHHHHHHhCCCCEEEechhhc
Confidence 6544 5556666655567763 5442 4688889999998876 4777543
No 277
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=25.87 E-value=2.7e+02 Score=25.79 Aligned_cols=57 Identities=21% Similarity=0.350 Sum_probs=41.2
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCCe--E-EEECCHHHHHHHHHhc------------C-CCceEEEEecCC
Q 007940 17 GLRVLVVDDDLAWLKILEKMLKKCSYE--V-TTCGLARDALSLLRER------------K-DGYDIVISDVNM 73 (584)
Q Consensus 17 gmrVLIVDDd~~~r~~L~~lL~~~gy~--V-~~a~~~~eAL~~L~~~------------~-~~pDLVIlDi~M 73 (584)
+.+|..||-++...+..++.++..|.. + ....++.+.+..+... . ..||+|++|...
T Consensus 85 ~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~~ 157 (239)
T 2hnk_A 85 DGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADK 157 (239)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGTTTCCSTTCEEEEEECSCG
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccccccccCCCCCcCEEEEeCCH
Confidence 569999999999999999999887752 3 3566777665544321 1 359999999643
No 278
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=25.83 E-value=1.1e+02 Score=30.22 Aligned_cols=82 Identities=15% Similarity=0.097 Sum_probs=53.2
Q ss_pred HHHHHHHHHhcCCCceEEEEecCC----CCC-CHHHHHHHHhccC-CCCEEE-EEcCCChHHHHhhhhcCCceEEeCCCC
Q 007940 50 ARDALSLLRERKDGYDIVISDVNM----PDM-DGFKLLEHVGLEM-DLPVIM-MSVDGETSRVMKGVQHGACDYLLKPIR 122 (584)
Q Consensus 50 ~~eAL~~L~~~~~~pDLVIlDi~M----Pdm-dGlELL~~Ir~~~-~iPVIv-lSa~~d~~~~~~aL~~GAdDYL~KP~~ 122 (584)
-.++++.+.+.. .|.+=+|++- |.+ -|.++++.||... +.|+.+ +-...-..++..+.++||+-+......
T Consensus 42 L~~~i~~l~~~G--~d~lHvDVmDg~FVpnit~G~~~v~~lr~~~p~~~ldvHLmv~~p~~~i~~~~~aGAd~itvH~Ea 119 (246)
T 3inp_A 42 LGDDVKAVLAAG--ADNIHFDVMDNHYVPNLTFGPMVLKALRDYGITAGMDVHLMVKPVDALIESFAKAGATSIVFHPEA 119 (246)
T ss_dssp HHHHHHHHHHTT--CCCEEEEEEBSSSSSCBCCCHHHHHHHHHHTCCSCEEEEEECSSCHHHHHHHHHHTCSEEEECGGG
T ss_pred HHHHHHHHHHcC--CCEEEEEecCCCcCcchhcCHHHHHHHHHhCCCCeEEEEEeeCCHHHHHHHHHHcCCCEEEEcccc
Confidence 467777777643 6777777643 333 4889999997654 777654 333334456778889999887776554
Q ss_pred HHHHHHHHHHH
Q 007940 123 MKELRNIWQHV 133 (584)
Q Consensus 123 ~~eL~~aI~~v 133 (584)
...+.+.++.+
T Consensus 120 ~~~~~~~i~~i 130 (246)
T 3inp_A 120 SEHIDRSLQLI 130 (246)
T ss_dssp CSCHHHHHHHH
T ss_pred chhHHHHHHHH
Confidence 44555555554
No 279
>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A
Probab=25.70 E-value=93 Score=29.57 Aligned_cols=77 Identities=14% Similarity=0.286 Sum_probs=51.8
Q ss_pred CHHHHHHHHHhcCCCce-EEEEecC----CCCCCHHHHHHHHhccCCCCEEEEEcCCChHHHHhhhhc-----C-CceEE
Q 007940 49 LARDALSLLRERKDGYD-IVISDVN----MPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQH-----G-ACDYL 117 (584)
Q Consensus 49 ~~~eAL~~L~~~~~~pD-LVIlDi~----MPdmdGlELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~-----G-AdDYL 117 (584)
+..+....+.+. .++ +++.++. +.+. .++++++++....+|||....-...+.+.++++. | |+..+
T Consensus 145 ~~~e~~~~~~~~--G~~~i~~t~~~~~g~~~g~-~~~~i~~l~~~~~iPvia~GGI~~~~d~~~~~~~~~~~~G~adgv~ 221 (241)
T 1qo2_A 145 DPVSLLKRLKEY--GLEEIVHTEIEKDGTLQEH-DFSLTKKIAIEAEVKVLAAGGISSENSLKTAQKVHTETNGLLKGVI 221 (241)
T ss_dssp CHHHHHHHHHTT--TCCEEEEEETTHHHHTCCC-CHHHHHHHHHHHTCEEEEESSCCSHHHHHHHHHHHHHTTTSEEEEE
T ss_pred CHHHHHHHHHhC--CCCEEEEEeecccccCCcC-CHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHhcccccCCeEeEEE
Confidence 445544445443 366 4555542 2333 3888888876668999988877888889999988 9 98876
Q ss_pred e------CCCCHHHHHH
Q 007940 118 L------KPIRMKELRN 128 (584)
Q Consensus 118 ~------KP~~~~eL~~ 128 (584)
+ .+++..++++
T Consensus 222 vgsal~~~~~~~~~~~~ 238 (241)
T 1qo2_A 222 VGRAFLEGILTVEVMKR 238 (241)
T ss_dssp ECHHHHTTSSCHHHHHH
T ss_pred eeHHHHcCCCCHHHHHH
Confidence 4 4666666554
No 280
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Probab=25.69 E-value=1e+02 Score=28.40 Aligned_cols=64 Identities=8% Similarity=0.056 Sum_probs=41.2
Q ss_pred CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccC-CCCEEEEEcCCChHHHHhhhhcCCceEEe
Q 007940 49 LARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEM-DLPVIMMSVDGETSRVMKGVQHGACDYLL 118 (584)
Q Consensus 49 ~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~-~iPVIvlSa~~d~~~~~~aL~~GAdDYL~ 118 (584)
+..++..++.. +.|+|-+.-. ..-|.+.++.++... ++||+...+-. .+.+.+++.+||+.+..
T Consensus 113 t~~e~~~a~~~---Gad~vk~~~~--~~~g~~~~~~l~~~~~~~pvia~GGI~-~~~~~~~~~~Ga~~v~v 177 (205)
T 1wa3_A 113 TPTELVKAMKL---GHTILKLFPG--EVVGPQFVKAMKGPFPNVKFVPTGGVN-LDNVCEWFKAGVLAVGV 177 (205)
T ss_dssp SHHHHHHHHHT---TCCEEEETTH--HHHHHHHHHHHHTTCTTCEEEEBSSCC-TTTHHHHHHHTCSCEEE
T ss_pred CHHHHHHHHHc---CCCEEEEcCc--cccCHHHHHHHHHhCCCCcEEEcCCCC-HHHHHHHHHCCCCEEEE
Confidence 55666555442 3676654321 113778888886544 78887665544 56788999999998764
No 281
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=25.60 E-value=1.2e+02 Score=30.17 Aligned_cols=85 Identities=11% Similarity=0.097 Sum_probs=48.1
Q ss_pred HHHHHHHHHhCCCeEE--EEC-CHHHHHHHHHhcCCCceEEEEecCCCCCCH---------HHHHHHHhccCCCCEEEEE
Q 007940 30 LKILEKMLKKCSYEVT--TCG-LARDALSLLRERKDGYDIVISDVNMPDMDG---------FKLLEHVGLEMDLPVIMMS 97 (584)
Q Consensus 30 r~~L~~lL~~~gy~V~--~a~-~~~eAL~~L~~~~~~pDLVIlDi~MPdmdG---------lELL~~Ir~~~~iPVIvlS 97 (584)
...+.+.+++.|...+ .+. +..+-++.+......+. .+. .+.+..| .+++++++...++||++=.
T Consensus 133 ~~~~~~~~~~~gl~~i~liap~s~~eri~~ia~~~~gfi--y~v-s~~G~TG~~~~~~~~~~~~v~~vr~~~~~Pv~vGf 209 (271)
T 1ujp_A 133 DPGLVRLAQEIGLETVFLLAPTSTDARIATVVRHATGFV--YAV-SVTGVTGMRERLPEEVKDLVRRIKARTALPVAVGF 209 (271)
T ss_dssp CHHHHHHHHHHTCEEECEECTTCCHHHHHHHHTTCCSCE--EEE-CC------------CCHHHHHHHHTTCCSCEEEES
T ss_pred HHHHHHHHHHcCCceEEEeCCCCCHHHHHHHHHhCCCCE--EEE-ecCcccCCCCCCCccHHHHHHHHHhhcCCCEEEEc
Confidence 3445555666665432 222 22344455554443443 332 3443333 4788888876789988666
Q ss_pred cCCChHHHHhhhhcCCceEEeC
Q 007940 98 VDGETSRVMKGVQHGACDYLLK 119 (584)
Q Consensus 98 a~~d~~~~~~aL~~GAdDYL~K 119 (584)
+-.+.+.+.++ .||+..++=
T Consensus 210 GI~t~e~a~~~--~~ADgVIVG 229 (271)
T 1ujp_A 210 GVSGKATAAQA--AVADGVVVG 229 (271)
T ss_dssp CCCSHHHHHHH--TTSSEEEEC
T ss_pred CCCCHHHHHHh--cCCCEEEEC
Confidence 66667777774 999999874
No 282
>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5
Probab=25.60 E-value=3.9e+02 Score=26.56 Aligned_cols=109 Identities=14% Similarity=0.101 Sum_probs=61.7
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHHhC--CCeEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCC
Q 007940 15 PAGLRVLVVDDDLAWLKILEKMLKKC--SYEVT-TCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDL 91 (584)
Q Consensus 15 p~gmrVLIVDDd~~~r~~L~~lL~~~--gy~V~-~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~i 91 (584)
...+||.||---..+.......|... +++++ ++....+..+.+.+.-. ..-+..| ++.+-..+.+
T Consensus 16 ~~~irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~~-~~~~~~~-----------~~~ll~~~~v 83 (340)
T 1zh8_A 16 LRKIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVG-NPAVFDS-----------YEELLESGLV 83 (340)
T ss_dssp CCCEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHS-SCEEESC-----------HHHHHHSSCC
T ss_pred CCceeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHHHhC-CCcccCC-----------HHHHhcCCCC
Confidence 34689999998744444444455554 46665 44433333333333211 1112222 2222123445
Q ss_pred CEEEEEcC--CChHHHHhhhhcCCceEEeCCC--CHHHHHHHHHHHHH
Q 007940 92 PVIMMSVD--GETSRVMKGVQHGACDYLLKPI--RMKELRNIWQHVFR 135 (584)
Q Consensus 92 PVIvlSa~--~d~~~~~~aL~~GAdDYL~KP~--~~~eL~~aI~~vlr 135 (584)
-+|+++.. ...+.+.+|+++|..=|+-||+ +.++..+.++.+-+
T Consensus 84 D~V~i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~ 131 (340)
T 1zh8_A 84 DAVDLTLPVELNLPFIEKALRKGVHVICEKPISTDVETGKKVVELSEK 131 (340)
T ss_dssp SEEEECCCGGGHHHHHHHHHHTTCEEEEESSSSSSHHHHHHHHHHHHH
T ss_pred CEEEEeCCchHHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHH
Confidence 55655543 4557888999999988999997 67777776665543
No 283
>3s83_A Ggdef family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, signaling protein; HET: MSE; 1.34A {Caulobacter crescentus} PDB: 3u2e_A
Probab=25.58 E-value=2e+02 Score=27.36 Aligned_cols=115 Identities=17% Similarity=0.176 Sum_probs=67.8
Q ss_pred CCCCEEEEEeCC----HHHHHHHHHHHHhCCCeEEE--ECCHHHHHHHHHhcCCCceEEEEecCC----CC-CCHHHHHH
Q 007940 15 PAGLRVLVVDDD----LAWLKILEKMLKKCSYEVTT--CGLARDALSLLRERKDGYDIVISDVNM----PD-MDGFKLLE 83 (584)
Q Consensus 15 p~gmrVLIVDDd----~~~r~~L~~lL~~~gy~V~~--a~~~~eAL~~L~~~~~~pDLVIlDi~M----Pd-mdGlELL~ 83 (584)
+..+.+-|-|.. .......-+.|+..|+.+.. ++++...+..+.... +|.|=+|-.+ .. .....+++
T Consensus 122 ~~~l~lEitE~~~~~~~~~~~~~l~~l~~~G~~ialDdfG~g~ssl~~L~~l~--~d~iKiD~~~v~~~~~~~~~~~~~~ 199 (259)
T 3s83_A 122 RGALKLEVTESDIMRDPERAAVILKTLRDAGAGLALDDFGTGFSSLSYLTRLP--FDTLKIDRYFVRTMGNNAGSAKIVR 199 (259)
T ss_dssp TTSEEEEEEHHHHHHCHHHHHHHHHHHHHHTCEEEEECC---CHHHHHHHHSC--CCEEEECHHHHHHTTTCHHHHHHHH
T ss_pred cceEEEEECCchhhhCHHHHHHHHHHHHHCCCEEEEECCCCCchhHHHHHhCC--CCEEEECHHHHhhhhcCchHHHHHH
Confidence 444555555432 22233344556778988764 456667788888754 8999999633 11 12334455
Q ss_pred HH---hccCCCCEEEEEcCCChHHHHhhhhcCCce----EEeCCCCHHHHHHHHHH
Q 007940 84 HV---GLEMDLPVIMMSVDGETSRVMKGVQHGACD----YLLKPIRMKELRNIWQH 132 (584)
Q Consensus 84 ~I---r~~~~iPVIvlSa~~d~~~~~~aL~~GAdD----YL~KP~~~~eL~~aI~~ 132 (584)
.+ .....+.|| ..+-.+.+....+.++|++- |+.||...+++...++.
T Consensus 200 ~i~~~a~~~g~~vi-aeGVEt~~~~~~l~~lG~~~~QG~~~~~p~~~~~~~~~l~~ 254 (259)
T 3s83_A 200 SVVKLGQDLDLEVV-AEGVENAEMAHALQSLGCDYGQGFGYAPALSPQEAEVYLNE 254 (259)
T ss_dssp HHHHHHHHTTCEEE-ECCCCSHHHHHHHHHHTCCEECBTTTBCCBCHHHHHHHHHH
T ss_pred HHHHHHHHCCCeEE-EEeCCCHHHHHHHHhcCCCEeecCcccCCCCHHHHHHHHHH
Confidence 44 223456555 44455666677777888763 36799999998775543
No 284
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=25.44 E-value=1.1e+02 Score=28.40 Aligned_cols=59 Identities=25% Similarity=0.357 Sum_probs=41.8
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHHhCCCe--EE-EECCHHHHHHHHHhc--CCCceEEEEecCCC
Q 007940 16 AGLRVLVVDDDLAWLKILEKMLKKCSYE--VT-TCGLARDALSLLRER--KDGYDIVISDVNMP 74 (584)
Q Consensus 16 ~gmrVLIVDDd~~~r~~L~~lL~~~gy~--V~-~a~~~~eAL~~L~~~--~~~pDLVIlDi~MP 74 (584)
.+.+|..||-++...+..++.++..+.. |. ...++.+.+..+... ...||+|++|....
T Consensus 82 ~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~V~~d~~~~ 145 (221)
T 3u81_A 82 PGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMVFLDHWKD 145 (221)
T ss_dssp TTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSEEEECSCGG
T ss_pred CCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceEEEEEcCCcc
Confidence 3569999999999999999998877642 33 566776655544320 03599999997443
No 285
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=25.40 E-value=2.4e+02 Score=28.07 Aligned_cols=107 Identities=11% Similarity=0.102 Sum_probs=63.2
Q ss_pred CCEEEEEeCCHH-----HHHHHHHHHHhCCCe---------EEEEC--CHHHHHHHHHhcCCCceEEEEecCCCCCCHHH
Q 007940 17 GLRVLVVDDDLA-----WLKILEKMLKKCSYE---------VTTCG--LARDALSLLRERKDGYDIVISDVNMPDMDGFK 80 (584)
Q Consensus 17 gmrVLIVDDd~~-----~r~~L~~lL~~~gy~---------V~~a~--~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlE 80 (584)
+.+++||-+.+. ....++++++..|.. +...+ +.++..+.+.. .|++++--. -+.-|+-
T Consensus 215 ~~~l~ivG~g~~~~~~~l~~~~~~~~~~~~l~~~v~~l~~vv~~~g~~~~~~~~~~~~~----adv~v~pS~-~E~~~~~ 289 (413)
T 3oy2_A 215 DAKVRFLCNSHHESKFDLHSIALRELVASGVDNVFTHLNKIMINRTVLTDERVDMMYNA----CDVIVNCSS-GEGFGLC 289 (413)
T ss_dssp TCCEEEEEECCTTCSCCHHHHHHHHHHHHTCSCHHHHHTTEEEECSCCCHHHHHHHHHH----CSEEEECCS-CCSSCHH
T ss_pred CcEEEEEeCCcccchhhHHHHHHHHHHHcCcccccccccceeeccCcCCHHHHHHHHHh----CCEEEeCCC-cCCCCcH
Confidence 346666654432 235555555555532 33323 24455555554 477777332 2334566
Q ss_pred HHHHHhccCCCCEEEEEcCCChHHHHhhhhcCCc---------------eE--EeCCCCHHHHHHHHHHHHH
Q 007940 81 LLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGAC---------------DY--LLKPIRMKELRNIWQHVFR 135 (584)
Q Consensus 81 LL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAd---------------DY--L~KP~~~~eL~~aI~~vlr 135 (584)
+++.+. ..+|||. |.. ....+.+..|.. ++ +..|-+.++|.+++ +++.
T Consensus 290 ~lEAma--~G~PvI~-s~~---~g~~e~v~~~~~~~i~~~~~~~~~~~~G~~gl~~~~d~~~la~~i-~l~~ 354 (413)
T 3oy2_A 290 SAEGAV--LGKPLII-SAV---GGADDYFSGDCVYKIKPSAWISVDDRDGIGGIEGIIDVDDLVEAF-TFFK 354 (413)
T ss_dssp HHHHHT--TTCCEEE-ECC---HHHHHHSCTTTSEEECCCEEEECTTTCSSCCEEEECCHHHHHHHH-HHTT
T ss_pred HHHHHH--cCCCEEE-cCC---CChHHHHccCcccccccccccccccccCcceeeCCCCHHHHHHHH-HHhc
Confidence 777653 5688885 332 234556666665 78 99999999999999 8764
No 286
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*
Probab=25.39 E-value=2.3e+02 Score=30.48 Aligned_cols=71 Identities=13% Similarity=-0.067 Sum_probs=46.0
Q ss_pred EEECCHHHHHHHHHhcCCCceEEEEecCCC------------CCCHHHHHHHHhcc---C------CCCEEEEEcCCChH
Q 007940 45 TTCGLARDALSLLRERKDGYDIVISDVNMP------------DMDGFKLLEHVGLE---M------DLPVIMMSVDGETS 103 (584)
Q Consensus 45 ~~a~~~~eAL~~L~~~~~~pDLVIlDi~MP------------dmdGlELL~~Ir~~---~------~iPVIvlSa~~d~~ 103 (584)
..+.+.+.|..++... .|+|.+-+. | +..-+.++..+... . .+|||.=.+-....
T Consensus 290 G~V~t~~~a~~l~~aG---ad~I~Vg~~-~g~~~~~r~~~~~g~p~~~~l~~v~~~~~~~~~~~~~~ipvia~GGi~~~~ 365 (503)
T 1me8_A 290 GNIVDGEGFRYLADAG---ADFIKIGIG-GGSICITREQKGIGRGQATAVIDVVAERNKYFEETGIYIPVCSDGGIVYDY 365 (503)
T ss_dssp EEECSHHHHHHHHHHT---CSEEEECSS-CSTTCCSTTTTCCCCCHHHHHHHHHHHHHHHHHHHSEECCEEEESCCCSHH
T ss_pred ccccCHHHHHHHHHhC---CCeEEeccc-CCcCcccccccCCCCchHHHHHHHHHHHHHHhhhcCCCceEEEeCCCCCHH
Confidence 3567777777776542 688877431 2 12334444444211 1 58988766677888
Q ss_pred HHHhhhhcCCceEEeC
Q 007940 104 RVMKGVQHGACDYLLK 119 (584)
Q Consensus 104 ~~~~aL~~GAdDYL~K 119 (584)
.+.+|+.+||+....-
T Consensus 366 di~kAlalGA~~V~iG 381 (503)
T 1me8_A 366 HMTLALAMGADFIMLG 381 (503)
T ss_dssp HHHHHHHTTCSEEEES
T ss_pred HHHHHHHcCCCEEEEC
Confidence 9999999999987653
No 287
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1
Probab=25.27 E-value=1.9e+02 Score=29.05 Aligned_cols=93 Identities=16% Similarity=0.125 Sum_probs=54.3
Q ss_pred EEEEeCCHHH----HHHHHHHHHhCCC---eEEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCC
Q 007940 20 VLVVDDDLAW----LKILEKMLKKCSY---EVTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGL-EMDL 91 (584)
Q Consensus 20 VLIVDDd~~~----r~~L~~lL~~~gy---~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~-~~~i 91 (584)
|||-|.+-.. ...++..-+..+. ..+.+.+.+++.++++. +.|+|++|-.-|+ +--++++.++. .+.+
T Consensus 166 vlikdnHi~~~G~i~~av~~ar~~~~~~~~I~VEV~tleea~eA~~a---GaD~I~LDn~~~e-~l~~av~~l~~~~~~v 241 (285)
T 1o4u_A 166 VMIKDNHLKMYGSAERAVQEVRKIIPFTTKIEVEVENLEDALRAVEA---GADIVMLDNLSPE-EVKDISRRIKDINPNV 241 (285)
T ss_dssp EEECHHHHHHHSSHHHHHHHHHTTSCTTSCEEEEESSHHHHHHHHHT---TCSEEEEESCCHH-HHHHHHHHHHHHCTTS
T ss_pred EEEchhHHhhcCCHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHHHc---CCCEEEECCCCHH-HHHHHHHHhhccCCCc
Confidence 5666655543 2233333333433 23467788899888774 3799999973221 11122333332 1244
Q ss_pred CEEEEEcCCChHHHHhhhhcCCceEE
Q 007940 92 PVIMMSVDGETSRVMKGVQHGACDYL 117 (584)
Q Consensus 92 PVIvlSa~~d~~~~~~aL~~GAdDYL 117 (584)
.|..|+--+.+.+.+..+.|++.+.
T Consensus 242 -~ieASGGIt~eni~~~a~tGVD~Is 266 (285)
T 1o4u_A 242 -IVEVSGGITEENVSLYDFETVDVIS 266 (285)
T ss_dssp -EEEEEECCCTTTGGGGCCTTCCEEE
T ss_pred -eEEEECCCCHHHHHHHHHcCCCEEE
Confidence 4556777777888888899987664
No 288
>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0
Probab=25.21 E-value=2e+02 Score=29.67 Aligned_cols=86 Identities=19% Similarity=0.100 Sum_probs=57.1
Q ss_pred HHHHHHHHHhCCCeEE--EECCHHHHHHHHHhcCCCceEEEEecCC----C-CCCHHHHHHHHhcc--CCCCEEEEEcCC
Q 007940 30 LKILEKMLKKCSYEVT--TCGLARDALSLLRERKDGYDIVISDVNM----P-DMDGFKLLEHVGLE--MDLPVIMMSVDG 100 (584)
Q Consensus 30 r~~L~~lL~~~gy~V~--~a~~~~eAL~~L~~~~~~pDLVIlDi~M----P-dmdGlELL~~Ir~~--~~iPVIvlSa~~ 100 (584)
.+.++.+-+..+..|. .+.+.++|..+... +.|.|.+.-+- . ...-++++..++.. .++|||.-..-.
T Consensus 214 ~~~i~~l~~~~~~pv~vK~~~~~e~a~~a~~~---Gad~I~vs~~ggr~~~~~~~~~~~l~~v~~~~~~~ipvia~GGI~ 290 (370)
T 1gox_A 214 WKDVAWLQTITSLPILVKGVITAEDARLAVQH---GAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRIPVFLDGGVR 290 (370)
T ss_dssp HHHHHHHHHHCCSCEEEECCCSHHHHHHHHHT---TCSEEEECCGGGTSSTTCCCHHHHHHHHHHHTTTSSCEEEESSCC
T ss_pred HHHHHHHHHHhCCCEEEEecCCHHHHHHHHHc---CCCEEEECCCCCccCCCcccHHHHHHHHHHHhCCCCEEEEECCCC
Confidence 3456666666564444 35567777665543 37888884321 1 12346677777543 279999888888
Q ss_pred ChHHHHhhhhcCCceEEe
Q 007940 101 ETSRVMKGVQHGACDYLL 118 (584)
Q Consensus 101 d~~~~~~aL~~GAdDYL~ 118 (584)
....+.+++.+||+...+
T Consensus 291 ~~~D~~k~l~~GAdaV~i 308 (370)
T 1gox_A 291 RGTDVFKALALGAAGVFI 308 (370)
T ss_dssp SHHHHHHHHHHTCSEEEE
T ss_pred CHHHHHHHHHcCCCEEee
Confidence 888999999999998754
No 289
>3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A
Probab=25.19 E-value=81 Score=32.00 Aligned_cols=59 Identities=17% Similarity=0.103 Sum_probs=42.9
Q ss_pred HHHHHHHHhccCCCCEEEEEc--CCChHHHHhhhhcCCceEEe-----CCCCHHHHHHHHHHHHHh
Q 007940 78 GFKLLEHVGLEMDLPVIMMSV--DGETSRVMKGVQHGACDYLL-----KPIRMKELRNIWQHVFRK 136 (584)
Q Consensus 78 GlELL~~Ir~~~~iPVIvlSa--~~d~~~~~~aL~~GAdDYL~-----KP~~~~eL~~aI~~vlrr 136 (584)
.++++++++....+|||++.. -...+.+..+++.|+++.++ +--++....+++..++..
T Consensus 186 d~elI~~Ike~~~IPVV~IAnGGI~TpedA~~~le~GaDGVmVGrAI~~s~DP~~~Akafv~Av~~ 251 (291)
T 3o07_A 186 PVSLLKDVLEKGKLPVVNFAAGGVATPADAALLMQLGCDGVFVGSGIFKSSNPVRLATAVVEATTH 251 (291)
T ss_dssp CHHHHHHHHHHTSCSSCEEBCSSCCSHHHHHHHHHTTCSCEEECGGGGGSSCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHccCCCEEEecCCCCCCHHHHHHHHHhCCCEEEEchHHhCCCCHHHHHHHHHHHHHh
Confidence 377888887778899998732 34678899999999999864 444566666666666543
No 290
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=25.14 E-value=2.6e+02 Score=28.86 Aligned_cols=65 Identities=18% Similarity=0.230 Sum_probs=42.8
Q ss_pred HHHHHHHHhcCCCceEEEEecCCCCCCH-HHHHHHHhccCCCCEEEEEcCCChHHHHhhhhcCCceEEe
Q 007940 51 RDALSLLRERKDGYDIVISDVNMPDMDG-FKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLL 118 (584)
Q Consensus 51 ~eAL~~L~~~~~~pDLVIlDi~MPdmdG-lELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~ 118 (584)
.+.++.+.+. .+|+|.+|........ ++.+++++....+|||+=. -...+.+..+.++||+...+
T Consensus 107 ~e~a~~l~ea--Gad~I~ld~a~G~~~~~~~~i~~i~~~~~~~Vivg~-v~t~e~A~~l~~aGaD~I~V 172 (361)
T 3khj_A 107 IERAKLLVEA--GVDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGN-VVTEEATKELIENGADGIKV 172 (361)
T ss_dssp HHHHHHHHHT--TCSEEEECCSCCSBHHHHHHHHHHHHHCCCEEEEEE-ECSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHc--CcCeEEEeCCCCCcHHHHHHHHHHHHhcCCcEEEcc-CCCHHHHHHHHHcCcCEEEE
Confidence 4445555443 3899999875433222 4677777655578887622 24567788999999987765
No 291
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=25.02 E-value=4.5e+02 Score=26.85 Aligned_cols=42 Identities=19% Similarity=0.321 Sum_probs=28.8
Q ss_pred CCCCEEEEEcCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHH
Q 007940 89 MDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFR 135 (584)
Q Consensus 89 ~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlr 135 (584)
..+|+|++-..++... .++.| ..+++.+ +.++|.+++.+++.
T Consensus 319 ~g~PvV~~~~~~~~~e---~v~~g-~~~lv~~-d~~~l~~ai~~ll~ 360 (403)
T 3ot5_A 319 MGVPVLVLRDTTERPE---GIEAG-TLKLIGT-NKENLIKEALDLLD 360 (403)
T ss_dssp TTCCEEECCSSCSCHH---HHHHT-SEEECCS-CHHHHHHHHHHHHH
T ss_pred hCCCEEEecCCCcchh---heeCC-cEEEcCC-CHHHHHHHHHHHHc
Confidence 5789987633333332 35667 4677766 89999999988875
No 292
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=24.87 E-value=1.5e+02 Score=28.71 Aligned_cols=56 Identities=21% Similarity=0.096 Sum_probs=37.7
Q ss_pred CCEEEEEeCC--------------------HHHHHHHHHHHHhCCCeEEEECCHH-----------------HHHHHHHh
Q 007940 17 GLRVLVVDDD--------------------LAWLKILEKMLKKCSYEVTTCGLAR-----------------DALSLLRE 59 (584)
Q Consensus 17 gmrVLIVDDd--------------------~~~r~~L~~lL~~~gy~V~~a~~~~-----------------eAL~~L~~ 59 (584)
.||||+|-.. ......+.+.|.+.|++|..+.... .....+++
T Consensus 3 ~mkIl~v~~~~~~~~~~~~~p~~p~~~gG~~~~~~~l~~~L~~~G~~v~v~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 82 (342)
T 2iuy_A 3 PLKVALVNIPLRVPGSDAWISVPPQGYGGIQWVVANLMDGLLELGHEVFLLGAPGSPAGRPGLTVVPAGEPEEIERWLRT 82 (342)
T ss_dssp CCEEEEECCCCBCTTSSSBCCSSCSSSCHHHHHHHHHHHHHHHTTCEEEEESCTTSCCCSTTEEECSCCSHHHHHHHHHH
T ss_pred ccEEEEEeccccccCcccccccCcccCChHHHHHHHHHHHHHHcCCeEEEEecCCCCCCCCcceeccCCcHHHHHHHHHh
Confidence 4799999887 2355567777888899988766432 34445555
Q ss_pred cCCCceEEEEecCCC
Q 007940 60 RKDGYDIVISDVNMP 74 (584)
Q Consensus 60 ~~~~pDLVIlDi~MP 74 (584)
. .||+|++-...+
T Consensus 83 ~--~~Dvi~~~~~~~ 95 (342)
T 2iuy_A 83 A--DVDVVHDHSGGV 95 (342)
T ss_dssp C--CCSEEEECSSSS
T ss_pred c--CCCEEEECCchh
Confidence 4 388888765443
No 293
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=24.85 E-value=2.5e+02 Score=25.55 Aligned_cols=66 Identities=15% Similarity=0.005 Sum_probs=43.6
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhCCC-eEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHh
Q 007940 18 LRVLVVDDDLAWLKILEKMLKKCSY-EVT-TCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVG 86 (584)
Q Consensus 18 mrVLIVDDd~~~r~~L~~lL~~~gy-~V~-~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir 86 (584)
-+|..||-++.+.+..++.++..+. .+. ...+..+. +......+|+|++|.-......-++++.+.
T Consensus 78 ~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~---~~~~~~~fD~V~~~~p~~~~~~~~~l~~l~ 145 (202)
T 2fpo_A 78 AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSF---LAQKGTPHNIVFVDPPFRRGLLEETINLLE 145 (202)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHH---HSSCCCCEEEEEECCSSSTTTHHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHH---HhhcCCCCCEEEECCCCCCCcHHHHHHHHH
Confidence 3899999999999999999988774 343 34455443 322223599999985432334445666653
No 294
>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*
Probab=24.69 E-value=1.6e+02 Score=30.97 Aligned_cols=57 Identities=18% Similarity=0.147 Sum_probs=39.5
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhCC------Ce---E-EEECCHHHHHHHHHhcCCCceEEEEecCCC
Q 007940 18 LRVLVVDDDLAWLKILEKMLKKCS------YE---V-TTCGLARDALSLLRERKDGYDIVISDVNMP 74 (584)
Q Consensus 18 mrVLIVDDd~~~r~~L~~lL~~~g------y~---V-~~a~~~~eAL~~L~~~~~~pDLVIlDi~MP 74 (584)
-+|-+||=|+.+.+..++.|.... .+ + +...+|.+.++...+....||+||+|+.-+
T Consensus 229 ~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~~yDvIIvDl~D~ 295 (381)
T 3c6k_A 229 KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLTAV 295 (381)
T ss_dssp SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTCCEEEEEEECCSS
T ss_pred ceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccCceeEEEECCCCC
Confidence 378889999999888888764211 11 2 356788888876554444599999998543
No 295
>1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP: c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A* 1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A* 1xbx_A*
Probab=24.67 E-value=2.7e+02 Score=25.93 Aligned_cols=85 Identities=8% Similarity=-0.105 Sum_probs=46.7
Q ss_pred HHHHHHHHhCCCeEEE----ECCHHHHHHHHHhcCCCceEEE---EecCCCCCCH-HHHHHHHhccC--CCCEEEEEcCC
Q 007940 31 KILEKMLKKCSYEVTT----CGLARDALSLLRERKDGYDIVI---SDVNMPDMDG-FKLLEHVGLEM--DLPVIMMSVDG 100 (584)
Q Consensus 31 ~~L~~lL~~~gy~V~~----a~~~~eAL~~L~~~~~~pDLVI---lDi~MPdmdG-lELL~~Ir~~~--~iPVIvlSa~~ 100 (584)
+.+.+.+++.|..+.. +-+... .+.+... ...|+|+ ..-.-|+.+| .+-++.++... .+||+ +++--
T Consensus 96 ~~~~~~~~~~g~~~~~~ll~~~t~~~-~~~l~~~-~~~~~vl~~a~~~~~~G~~g~~~~i~~lr~~~~~~~~i~-v~GGI 172 (216)
T 1q6o_A 96 KGALDVAKEFNGDVQIELTGYWTWEQ-AQQWRDA-GIGQVVYHRSRDAQAAGVAWGEADITAIKRLSDMGFKVT-VTGGL 172 (216)
T ss_dssp HHHHHHHHHTTCEEEEEECSCCCHHH-HHHHHHT-TCCEEEEECCHHHHHTTCCCCHHHHHHHHHHHHTTCEEE-EESSC
T ss_pred HHHHHHHHHcCCCceeeeeeCCChhh-HHHHHhc-CcHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCcEE-EECCc
Confidence 3444455556655421 222332 2333332 2246666 2222377777 66666665432 45544 55555
Q ss_pred ChHHHHhhhhcCCceEEe
Q 007940 101 ETSRVMKGVQHGACDYLL 118 (584)
Q Consensus 101 d~~~~~~aL~~GAdDYL~ 118 (584)
..+.+.+++++||+.++.
T Consensus 173 ~~~~~~~~~~aGad~ivv 190 (216)
T 1q6o_A 173 ALEDLPLFKGIPIHVFIA 190 (216)
T ss_dssp CGGGGGGGTTSCCSEEEE
T ss_pred ChhhHHHHHHcCCCEEEE
Confidence 567788999999997764
No 296
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=24.43 E-value=2.7e+02 Score=29.06 Aligned_cols=77 Identities=16% Similarity=0.021 Sum_probs=48.2
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhCCCe---EE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHH-hccCCCC
Q 007940 18 LRVLVVDDDLAWLKILEKMLKKCSYE---VT-TCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHV-GLEMDLP 92 (584)
Q Consensus 18 mrVLIVDDd~~~r~~L~~lL~~~gy~---V~-~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~I-r~~~~iP 92 (584)
-+|..||-++...+.+++-++..|.. +. ...++.+.+.. .....||+|++|. ++.. .++++.. +.-..--
T Consensus 78 ~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~--~~~~~fD~V~lDP--~g~~-~~~l~~a~~~Lk~gG 152 (392)
T 3axs_A 78 EKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRK--EWGFGFDYVDLDP--FGTP-VPFIESVALSMKRGG 152 (392)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHS--CCSSCEEEEEECC--SSCC-HHHHHHHHHHEEEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHH--hhCCCCcEEEECC--CcCH-HHHHHHHHHHhCCCC
Confidence 47999999999999999999988752 43 44555554430 2223599999997 4332 2345443 2111222
Q ss_pred EEEEEcC
Q 007940 93 VIMMSVD 99 (584)
Q Consensus 93 VIvlSa~ 99 (584)
+|++|..
T Consensus 153 ll~~t~t 159 (392)
T 3axs_A 153 ILSLTAT 159 (392)
T ss_dssp EEEEEEC
T ss_pred EEEEEec
Confidence 6666653
No 297
>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A
Probab=24.28 E-value=60 Score=29.73 Aligned_cols=76 Identities=16% Similarity=0.236 Sum_probs=45.7
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecC-CCCCCH--HHHHHHHhccCCCCEE
Q 007940 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVN-MPDMDG--FKLLEHVGLEMDLPVI 94 (584)
Q Consensus 18 mrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~-MPdmdG--lELL~~Ir~~~~iPVI 94 (584)
|.|+|||-.......+.+.|++.|..+..+.... .++.+... .+|.||+-=. -|...+ .++++.. .....||+
T Consensus 1 mmi~iid~~~~~~~~~~~~l~~~G~~~~~~~~~~-~~~~~~~~--~~dglil~Gg~~~~~~~~~~~~i~~~-~~~~~Pil 76 (189)
T 1wl8_A 1 MMIVIMDNGGQYVHRIWRTLRYLGVETKIIPNTT-PLEEIKAM--NPKGIIFSGGPSLENTGNCEKVLEHY-DEFNVPIL 76 (189)
T ss_dssp CEEEEEECSCTTHHHHHHHHHHTTCEEEEEETTC-CHHHHHHT--CCSEEEECCCSCTTCCTTHHHHHHTG-GGTCSCEE
T ss_pred CeEEEEECCCchHHHHHHHHHHCCCeEEEEECCC-ChHHhccc--CCCEEEECCCCChhhhhhHHHHHHHH-hhCCCeEE
Confidence 3599999888778899999999998887665432 22233322 2787776221 222223 2333322 13568988
Q ss_pred EEE
Q 007940 95 MMS 97 (584)
Q Consensus 95 vlS 97 (584)
-++
T Consensus 77 GIC 79 (189)
T 1wl8_A 77 GIC 79 (189)
T ss_dssp EET
T ss_pred EEc
Confidence 775
No 298
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=24.26 E-value=1.7e+02 Score=26.20 Aligned_cols=54 Identities=15% Similarity=0.049 Sum_probs=40.6
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEec
Q 007940 15 PAGLRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDV 71 (584)
Q Consensus 15 p~gmrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi 71 (584)
.+|.+|.++..... ...+.+.+...+..+..+.+..++++++... ..|+++.|.
T Consensus 109 L~g~~v~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~G--~vDa~~~~~ 162 (239)
T 1lst_A 109 LKGKHVGVLQGSTQ-EAYANDNWRTKGVDVVAYANQDLIYSDLTAG--RLDAALQDE 162 (239)
T ss_dssp HTTCEEEEETTSHH-HHHHHHHTGGGTCEEEEESSHHHHHHHHHTT--SCSEEEEEH
T ss_pred hCCCEEEEEcCccH-HHHHHHhcccCCCeEEEcCCHHHHHHHHHcC--CCCEEEeCc
Confidence 35778888766653 4456666655577888899999999999874 499999974
No 299
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}
Probab=24.24 E-value=2.3e+02 Score=25.72 Aligned_cols=30 Identities=20% Similarity=0.264 Sum_probs=22.3
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhCCCeEEEE
Q 007940 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTC 47 (584)
Q Consensus 18 mrVLIVDDd~~~r~~L~~lL~~~gy~V~~a 47 (584)
|||||.--.-.+-..+.+.|.+.|++|..+
T Consensus 1 M~ilItGatG~iG~~l~~~L~~~g~~V~~~ 30 (219)
T 3dqp_A 1 MKIFIVGSTGRVGKSLLKSLSTTDYQIYAG 30 (219)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTSSCEEEEE
T ss_pred CeEEEECCCCHHHHHHHHHHHHCCCEEEEE
Confidence 578888877777777777777778777643
No 300
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=24.22 E-value=1.5e+02 Score=29.41 Aligned_cols=96 Identities=16% Similarity=0.159 Sum_probs=56.8
Q ss_pred EEEeCCHHHHHHHHHHHHhCCCeEE--EEC-CHHHHHHHHHhcCCCceEEEEecCCCCCCH---------HHHHHHHhcc
Q 007940 21 LVVDDDLAWLKILEKMLKKCSYEVT--TCG-LARDALSLLRERKDGYDIVISDVNMPDMDG---------FKLLEHVGLE 88 (584)
Q Consensus 21 LIVDDd~~~r~~L~~lL~~~gy~V~--~a~-~~~eAL~~L~~~~~~pDLVIlDi~MPdmdG---------lELL~~Ir~~ 88 (584)
+|.|=...-...+...+++.|..++ ++. +..+-++.+.+....| |-+ +...+..| .+++++++..
T Consensus 130 IipDlp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~~~gf--iY~-vs~~GvTG~~~~~~~~~~~~v~~vr~~ 206 (271)
T 3nav_A 130 LIADVPTNESQPFVAAAEKFGIQPIFIAPPTASDETLRAVAQLGKGY--TYL-LSRAGVTGAETKANMPVHALLERLQQF 206 (271)
T ss_dssp EETTSCGGGCHHHHHHHHHTTCEEEEEECTTCCHHHHHHHHHHCCSC--EEE-CCCC--------CCHHHHHHHHHHHHT
T ss_pred EECCCCHHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHHCCCe--EEE-EeccCCCCcccCCchhHHHHHHHHHHh
Confidence 3333334445667788888886543 332 2345555555544333 322 22332222 4567788766
Q ss_pred CCCCEEEEEcCCChHHHHhhhhcCCceEEeC
Q 007940 89 MDLPVIMMSVDGETSRVMKGVQHGACDYLLK 119 (584)
Q Consensus 89 ~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~K 119 (584)
.++||++=.+-.+.+.+.+++..||+..|+-
T Consensus 207 ~~~Pv~vGfGIst~e~~~~~~~~gADgvIVG 237 (271)
T 3nav_A 207 DAPPALLGFGISEPAQVKQAIEAGAAGAISG 237 (271)
T ss_dssp TCCCEEECSSCCSHHHHHHHHHTTCSEEEES
T ss_pred cCCCEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 6889886445567788877999999999986
No 301
>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A
Probab=24.16 E-value=2.1e+02 Score=29.87 Aligned_cols=108 Identities=13% Similarity=0.141 Sum_probs=58.3
Q ss_pred CCCEEEEEeC----CHHHHHHHHHHHHh-CCCeEE-EECCHHHHHHHHHhcCCCceE-EEEecCCCCCCHHHHHHHHhcc
Q 007940 16 AGLRVLVVDD----DLAWLKILEKMLKK-CSYEVT-TCGLARDALSLLRERKDGYDI-VISDVNMPDMDGFKLLEHVGLE 88 (584)
Q Consensus 16 ~gmrVLIVDD----d~~~r~~L~~lL~~-~gy~V~-~a~~~~eAL~~L~~~~~~pDL-VIlDi~MPdmdGlELL~~Ir~~ 88 (584)
+.+||.||-- -..-...+..+.+. .+++++ ++....+..+.+.+....+++ +.. + ++.+-..
T Consensus 19 ~~irvgiIG~g~~gG~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~-------~----~~~ll~~ 87 (438)
T 3btv_A 19 APIRVGFVGLNAAKGWAIKTHYPAILQLSSQFQITALYSPKIETSIATIQRLKLSNATAFP-------T----LESFASS 87 (438)
T ss_dssp CCEEEEEESCCTTSSSTTTTHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTCTTCEEES-------S----HHHHHHC
T ss_pred CCCEEEEEcccCCCChHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCCcceeeC-------C----HHHHhcC
Confidence 4689999987 22222333333333 367765 444334444444332111111 121 2 1222223
Q ss_pred CCCCEEEEEcC--CChHHHHhhhhcC------CceEEeCCCC--HHHHHHHHHHHH
Q 007940 89 MDLPVIMMSVD--GETSRVMKGVQHG------ACDYLLKPIR--MKELRNIWQHVF 134 (584)
Q Consensus 89 ~~iPVIvlSa~--~d~~~~~~aL~~G------AdDYL~KP~~--~~eL~~aI~~vl 134 (584)
+.+-+|+++.. ...+.+..|+++| ..=|+-||+. .++..++++.+-
T Consensus 88 ~~vD~V~i~tp~~~H~~~~~~al~aG~~~~~~khVl~EKP~a~~~~e~~~l~~~a~ 143 (438)
T 3btv_A 88 STIDMIVIAIQVASHYEVVMPLLEFSKNNPNLKYLFVEWALACSLDQAESIYKAAA 143 (438)
T ss_dssp SSCSEEEECSCHHHHHHHHHHHHHHGGGCTTCCEEEEESSCCSSHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCcHHHHHHHHHHHHCCCCcccceeEEecCcccCCHHHHHHHHHHHH
Confidence 45666666543 3457788999999 7778999975 666666665543
No 302
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.85 E-value=1.2e+02 Score=23.84 Aligned_cols=46 Identities=24% Similarity=0.299 Sum_probs=34.2
Q ss_pred cccchhHHHHHHHHHHHhcccc---cCHHHHHhhhCCCCCchHHHHhhhHH
Q 007940 203 VVWSIDLHQKFVKAVNQIGFDK---VGPKKILDLMNVPWLTRENVASHLQK 250 (584)
Q Consensus 203 vvws~eLhqkFv~av~~iG~s~---~~Pk~Il~~m~v~~Lt~~~V~sHlqk 250 (584)
-.||.+=.+.|.+++...|... ..=..|-+.| ++=|..++..|-++
T Consensus 9 ~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~--~~Rt~~qcr~r~~~ 57 (75)
T 2yum_A 9 QLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADEL--GNRTAKQVASQVQK 57 (75)
T ss_dssp SCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHH--SSSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHh--CCCCHHHHHHHHHH
Confidence 4699999999999999988655 3344555555 67777778777654
No 303
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=23.80 E-value=2.3e+02 Score=28.16 Aligned_cols=32 Identities=19% Similarity=0.206 Sum_probs=23.5
Q ss_pred CCEEEEEeCC---------HHHHHHHHHHHHhCCCeEEEEC
Q 007940 17 GLRVLVVDDD---------LAWLKILEKMLKKCSYEVTTCG 48 (584)
Q Consensus 17 gmrVLIVDDd---------~~~r~~L~~lL~~~gy~V~~a~ 48 (584)
.||||+|-.. ......|.+.|.+.|++|..+.
T Consensus 2 ~MkIl~v~~~~~p~~~gG~~~~~~~la~~L~~~G~~V~v~~ 42 (439)
T 3fro_A 2 HMKVLLLGFEFLPVKVGGLAEALTAISEALASLGHEVLVFT 42 (439)
T ss_dssp CCEEEEECSCCTTSCSSSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred ceEEEEEecccCCcccCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 5899999865 1245667788888899887554
No 304
>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*
Probab=23.66 E-value=90 Score=32.35 Aligned_cols=34 Identities=9% Similarity=0.060 Sum_probs=28.4
Q ss_pred hHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHH
Q 007940 102 TSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFR 135 (584)
Q Consensus 102 ~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlr 135 (584)
.+.+.+|+++|..=++-||++.++..+.++.+-+
T Consensus 84 ~~~a~~al~aGkhVl~EKPl~~~ea~~l~~~A~~ 117 (372)
T 4gmf_A 84 TQLARHFLARGVHVIQEHPLHPDDISSLQTLAQE 117 (372)
T ss_dssp HHHHHHHHHTTCEEEEESCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcEEEecCCCHHHHHHHHHHHHH
Confidence 5678999999999999999999888777665543
No 305
>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A*
Probab=23.66 E-value=2.3e+02 Score=29.27 Aligned_cols=85 Identities=14% Similarity=0.030 Sum_probs=57.2
Q ss_pred HHHHHHHHhCCC--eEEEECCHHHHHHHHHhcCCCceEEEEecCC-----CCCCHHHHHHHHhcc--CCCCEEEEEcCCC
Q 007940 31 KILEKMLKKCSY--EVTTCGLARDALSLLRERKDGYDIVISDVNM-----PDMDGFKLLEHVGLE--MDLPVIMMSVDGE 101 (584)
Q Consensus 31 ~~L~~lL~~~gy--~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~M-----PdmdGlELL~~Ir~~--~~iPVIvlSa~~d 101 (584)
+.++.+-+..+. .+..+.+.++|..+... ++|.|++.-+- -+...++++..+... ..+|||.-..-..
T Consensus 207 ~~i~~lr~~~~~PvivK~v~~~e~A~~a~~~---GaD~I~vsn~GG~~~d~~~~~~~~L~~i~~av~~~ipVia~GGI~~ 283 (352)
T 3sgz_A 207 NDLSLLQSITRLPIILKGILTKEDAELAMKH---NVQGIVVSNHGGRQLDEVSASIDALREVVAAVKGKIEVYMDGGVRT 283 (352)
T ss_dssp HHHHHHHHHCCSCEEEEEECSHHHHHHHHHT---TCSEEEECCGGGTSSCSSCCHHHHHHHHHHHHTTSSEEEEESSCCS
T ss_pred HHHHHHHHhcCCCEEEEecCcHHHHHHHHHc---CCCEEEEeCCCCCccCCCccHHHHHHHHHHHhCCCCeEEEECCCCC
Confidence 445555555443 33456778887776653 48888874321 022457777777432 3799998888888
Q ss_pred hHHHHhhhhcCCceEEe
Q 007940 102 TSRVMKGVQHGACDYLL 118 (584)
Q Consensus 102 ~~~~~~aL~~GAdDYL~ 118 (584)
...+.+++.+||+...+
T Consensus 284 g~Dv~kaLalGA~aV~i 300 (352)
T 3sgz_A 284 GTDVLKALALGARCIFL 300 (352)
T ss_dssp HHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHcCCCEEEE
Confidence 89999999999998654
No 306
>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}
Probab=23.65 E-value=5.3e+02 Score=25.26 Aligned_cols=105 Identities=10% Similarity=0.067 Sum_probs=59.9
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCCEEE
Q 007940 17 GLRVLVVDDDLAWLKILEKMLKKCSYEVT-TCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIM 95 (584)
Q Consensus 17 gmrVLIVDDd~~~r~~L~~lL~~~gy~V~-~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVIv 95 (584)
.+||.||---..-...+..+.+..+++++ ++....+..+.+.+. +.+-.. +--++++ .+.+-+|+
T Consensus 3 ~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~---~~~~~~-------~~~~~l~----~~~~D~V~ 68 (331)
T 4hkt_A 3 TVRFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAAEAIAGA---YGCEVR-------TIDAIEA----AADIDAVV 68 (331)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHH---TTCEEC-------CHHHHHH----CTTCCEEE
T ss_pred ceEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHHHHHHHHH---hCCCcC-------CHHHHhc----CCCCCEEE
Confidence 46899998866555555544444467766 344334444444332 122111 2222332 33455555
Q ss_pred EEcC--CChHHHHhhhhcCCceEEeCCC--CHHHHHHHHHHHHH
Q 007940 96 MSVD--GETSRVMKGVQHGACDYLLKPI--RMKELRNIWQHVFR 135 (584)
Q Consensus 96 lSa~--~d~~~~~~aL~~GAdDYL~KP~--~~~eL~~aI~~vlr 135 (584)
++.. ...+.+..++++|..=++.||+ +.++..+.++.+-+
T Consensus 69 i~tp~~~h~~~~~~al~~gk~v~~EKP~~~~~~~~~~l~~~a~~ 112 (331)
T 4hkt_A 69 ICTPTDTHADLIERFARAGKAIFCEKPIDLDAERVRACLKVVSD 112 (331)
T ss_dssp ECSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHH
T ss_pred EeCCchhHHHHHHHHHHcCCcEEEecCCCCCHHHHHHHHHHHHH
Confidence 5543 4557788999999888999995 56666666555433
No 307
>3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A
Probab=23.61 E-value=70 Score=31.25 Aligned_cols=59 Identities=19% Similarity=0.282 Sum_probs=40.0
Q ss_pred HHHHHHHhcCCCceEEEEecCC--CCCCHHHHHHHHhccCCCCEEEEEcCCChHHHHhhhhcCCceEEeC
Q 007940 52 DALSLLRERKDGYDIVISDVNM--PDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLK 119 (584)
Q Consensus 52 eAL~~L~~~~~~pDLVIlDi~M--PdmdGlELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~K 119 (584)
++++.+.+ .+.|+|++--.. ..-+-.+++++++. .++|+|++.... ..+..|||.|+.-
T Consensus 22 ~~~~~~~~--~GtD~i~vGGs~gvt~~~~~~~v~~ik~-~~~Pvvlfp~~~------~~v~~gaD~~l~p 82 (228)
T 3vzx_A 22 EQLEILCE--SGTDAVIIGGSDGVTEDNVLRMMSKVRR-FLVPCVLEVSAI------EAIVPGFDLYFIP 82 (228)
T ss_dssp THHHHHHT--SSCSEEEECCCSCCCHHHHHHHHHHHTT-SSSCEEEECSCG------GGCCSCCSEEEEE
T ss_pred HHHHHHHH--cCCCEEEECCcCCCCHHHHHHHHHHhhc-cCCCEEEeCCCH------HHccccCCEEEEe
Confidence 34555544 347999987643 22345677788876 799999998763 2345799998864
No 308
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A
Probab=23.60 E-value=3.2e+02 Score=29.75 Aligned_cols=78 Identities=15% Similarity=0.194 Sum_probs=51.7
Q ss_pred HHHHHHHHhcCCCceEEE-EecCCCCC-C--HHHHHHHHhccCCCCEEEEEcCCChHHHHhhhh-cCCceEEe------C
Q 007940 51 RDALSLLRERKDGYDIVI-SDVNMPDM-D--GFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQ-HGACDYLL------K 119 (584)
Q Consensus 51 ~eAL~~L~~~~~~pDLVI-lDi~MPdm-d--GlELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~-~GAdDYL~------K 119 (584)
.+..+.+.+. ..+.|+ .++.--++ . -+++++.++....+|||.--.-.+.+.+.++++ .||++.++ .
T Consensus 455 ~e~a~~~~~~--Ga~~il~t~~~~dG~~~G~d~~li~~l~~~~~iPVIasGGi~s~~d~~~~~~~~G~~gvivg~a~~~~ 532 (555)
T 1jvn_A 455 WELTRACEAL--GAGEILLNCIDKDGSNSGYDLELIEHVKDAVKIPVIASSGAGVPEHFEEAFLKTRADACLGAGMFHRG 532 (555)
T ss_dssp HHHHHHHHHT--TCCEEEECCGGGTTTCSCCCHHHHHHHHHHCSSCEEECSCCCSHHHHHHHHHHSCCSEEEESHHHHTT
T ss_pred HHHHHHHHHc--CCCEEEEeCCCCCCCCCCCCHHHHHHHHHhCCccEEEECCCCCHHHHHHHHHhcCChHHHHHHHHHcC
Confidence 3444444443 255555 45532222 2 278899987777899997666778888999988 79998764 4
Q ss_pred CCCHHHHHHHH
Q 007940 120 PIRMKELRNIW 130 (584)
Q Consensus 120 P~~~~eL~~aI 130 (584)
++...++++.+
T Consensus 533 ~~~~~e~~~~l 543 (555)
T 1jvn_A 533 EFTVNDVKEYL 543 (555)
T ss_dssp SCCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 77777776643
No 309
>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}
Probab=23.59 E-value=76 Score=30.28 Aligned_cols=26 Identities=27% Similarity=0.478 Sum_probs=23.8
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCC
Q 007940 17 GLRVLVVDDDLAWLKILEKMLKKCSY 42 (584)
Q Consensus 17 gmrVLIVDDd~~~r~~L~~lL~~~gy 42 (584)
+-+|.-||.++...+..+..+++.|+
T Consensus 51 ~g~VvtvE~d~~~~~~ar~~l~~~g~ 76 (202)
T 3cvo_A 51 GKHVTSVESDRAWARMMKAWLAANPP 76 (202)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHSCC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCC
Confidence 46999999999999999999999886
No 310
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=23.53 E-value=4e+02 Score=25.79 Aligned_cols=68 Identities=10% Similarity=0.088 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHhCCCeEEEECC---HH---HHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCCEEEEEcC
Q 007940 27 LAWLKILEKMLKKCSYEVTTCGL---AR---DALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVD 99 (584)
Q Consensus 27 ~~~r~~L~~lL~~~gy~V~~a~~---~~---eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVIvlSa~ 99 (584)
..+...+++.+++.||.+..+.. .. +.++.+... .+|-||+--. ..+.-.+.+.+. ...+|||++...
T Consensus 79 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~--~vdgiIi~~~--~~~~~~~~~~~~-~~~iPvV~~~~~ 152 (338)
T 3dbi_A 79 SELLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLDL--RCDAIMIYPR--FLSVDEIDDIID-AHSQPIMVLNRR 152 (338)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTTSHHHHHHHHHHHHHT--TCSEEEECCS--SSCHHHHHHHHH-HCSSCEEEESSC
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhC--CCCEEEEeCC--CCChHHHHHHHH-cCCCCEEEEcCC
Confidence 34566778888899998876543 22 244555543 3888887432 223333444332 456899887543
No 311
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=23.28 E-value=80 Score=29.01 Aligned_cols=77 Identities=18% Similarity=0.223 Sum_probs=43.9
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCH---HHHHHHHHhcCCCceEEEEec-CCCCCCH--HHHHHHHhccCCC
Q 007940 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLA---RDALSLLRERKDGYDIVISDV-NMPDMDG--FKLLEHVGLEMDL 91 (584)
Q Consensus 18 mrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~---~eAL~~L~~~~~~pDLVIlDi-~MPdmdG--lELL~~Ir~~~~i 91 (584)
++|+|||.-......+.+.|++.|+.+..+... ++..+.+... ..+++||+-= .-|...| .++++.+ ...+
T Consensus 1 ~~i~iiDn~~s~~~~i~~~l~~~G~~~~v~~~~~~~~~i~~~l~~~-~~~~iil~gGpg~~~~~~~~~~l~~~~--~~~~ 77 (192)
T 1i1q_B 1 ADILLLDNIDSFTWNLADQLRTNGHNVVIYRNHIPAQTLIDRLATM-KNPVLMLSPGPGVPSEAGCMPELLTRL--RGKL 77 (192)
T ss_dssp CEEEEEECSCSSHHHHHHHHHHTTCEEEEEETTSCSHHHHHHHTTC-SSEEEEECCCSSCGGGSTTHHHHHHHH--BTTB
T ss_pred CcEEEEECCccHHHHHHHHHHHCCCeEEEEECCCCHHHHHHHhhhc-cCCeEEECCCCcCchhCchHHHHHHHH--hcCC
Confidence 489999965556777888899999887766544 3333333321 2255666421 1111112 2344433 3568
Q ss_pred CEEEEE
Q 007940 92 PVIMMS 97 (584)
Q Consensus 92 PVIvlS 97 (584)
||+=++
T Consensus 78 PilGIC 83 (192)
T 1i1q_B 78 PIIGIC 83 (192)
T ss_dssp CEEEET
T ss_pred CEEEEC
Confidence 888765
No 312
>2akz_A Gamma enolase, neural; fluoride inhibition, negative cooperativity, glycolysis, , isothermal titration calorimetry, lyase; 1.36A {Homo sapiens} SCOP: c.1.11.1 d.54.1.1 PDB: 2akm_A 1te6_A 2psn_A 3b97_A 2xsx_A 1pdz_A 1pdy_A
Probab=23.19 E-value=96 Score=33.05 Aligned_cols=101 Identities=15% Similarity=0.305 Sum_probs=61.9
Q ss_pred eCCHHHHHHHHHHHHhCCC--eEE----EEC-----------------------CHHHHHHHHHhcCCCceEEEEecCCC
Q 007940 24 DDDLAWLKILEKMLKKCSY--EVT----TCG-----------------------LARDALSLLRERKDGYDIVISDVNMP 74 (584)
Q Consensus 24 DDd~~~r~~L~~lL~~~gy--~V~----~a~-----------------------~~~eAL~~L~~~~~~pDLVIlDi~MP 74 (584)
+++....+.+++.++..|| .+. ++. +..+++..+.+.-..++++.+.--++
T Consensus 217 ~~~~e~l~~i~~ai~~~G~~g~v~l~vD~a~se~~~~g~y~l~~~~~~~~~~~~t~~e~~~~~~~ll~~y~i~~IEdPl~ 296 (439)
T 2akz_A 217 LENSEALELVKEAIDKAGYTEKIVIGMDVAASEFYRDGKYDLDFKSPTDPSRYITGDQLGALYQDFVRDYPVVSIEDPFD 296 (439)
T ss_dssp CCHHHHHHHHHHHHHHHTCTTTCEEEEECCGGGGEETTEECTTTTSSCCGGGCBCHHHHHHHHHHHHHHSCEEEEECCSC
T ss_pred ccHHHHHHHHHHHHHHcCCccceEEEEechHhhhccCCeeEEeccccccccccCCHHHHHHHHHHHHHhCCCcEEECCCC
Confidence 4567778888888876665 222 211 45666666543212377888876666
Q ss_pred CCCHHHHHHHHhccCCCCEEEEEcC---CChHHHHhhhhcCCceE-EeCCCCHHHHH
Q 007940 75 DMDGFKLLEHVGLEMDLPVIMMSVD---GETSRVMKGVQHGACDY-LLKPIRMKELR 127 (584)
Q Consensus 75 dmdGlELL~~Ir~~~~iPVIvlSa~---~d~~~~~~aL~~GAdDY-L~KP~~~~eL~ 127 (584)
.-| ++-.++++....+||+ ... .....+.++++.||+++ ++|+-...-|.
T Consensus 297 ~dD-~~g~~~L~~~~~ipI~--gDE~~vt~~~~~~~~i~~~a~d~i~iKv~qiGGit 350 (439)
T 2akz_A 297 QDD-WAAWSKFTANVGIQIV--GDDLTVTNPKRIERAVEEKACNCLLLKVNQIGSVT 350 (439)
T ss_dssp TTC-HHHHHHHHHTCSSEEE--ESTTTTTCHHHHHHHHHTTCCSEEEECHHHHCCHH
T ss_pred ccc-HHHHHHHHhCCCCEEE--eCCCccCCHHHHHHHHHhCCCCEEEechhhcCCHH
Confidence 544 5555666555567763 444 26688889999998776 57775433333
No 313
>1req_B Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 1e1c_B* 2req_B* 3req_B* 4req_B* 5req_B* 6req_B* 7req_B*
Probab=23.04 E-value=98 Score=34.81 Aligned_cols=96 Identities=3% Similarity=-0.051 Sum_probs=58.1
Q ss_pred HHHHHHHHhCCCeEEEE---CCHHHHHHHHHhcCCCceEEEEecCCCC-CC-HHHHHHHHhccCCCCEEEEEcCCChH--
Q 007940 31 KILEKMLKKCSYEVTTC---GLARDALSLLRERKDGYDIVISDVNMPD-MD-GFKLLEHVGLEMDLPVIMMSVDGETS-- 103 (584)
Q Consensus 31 ~~L~~lL~~~gy~V~~a---~~~~eAL~~L~~~~~~pDLVIlDi~MPd-md-GlELL~~Ir~~~~iPVIvlSa~~d~~-- 103 (584)
..+..+|+..||+|+.. .+ ++..+...+.. +|+|.+...+.. |. .-++++.|+...- ..|++.+.....
T Consensus 528 ~~va~~l~~aGfeVi~~g~~~t-ee~v~aa~e~~--adiv~lSsl~~~~~~~~~~v~~~Lk~aG~-~~V~vgG~P~~d~~ 603 (637)
T 1req_B 528 GFSSPVWHIAGIDTPQVEGGTT-AEIVEAFKKSG--AQVADLCSSAKVYAQQGLEVAKALKAAGA-KALYLSGAFKEFGD 603 (637)
T ss_dssp HHHHHHHHHTTCBCCEEECCCH-HHHHHHHHHHT--CSEEEEECCHHHHHHHHHHHHHHHHHTTC-SEEEEESCGGGGGG
T ss_pred HHHHHHHHhCCeeEEeCCCCCC-HHHHHHHHhcC--CCEEEEecccHHHHHHHHHHHHHHHhCCC-CeEEEeCCCCccch
Confidence 46677899999998743 23 67777776654 899988765431 22 2345555654332 345666643221
Q ss_pred HHHhhhhcCCceEEeCCCCHHHHHHHHH
Q 007940 104 RVMKGVQHGACDYLLKPIRMKELRNIWQ 131 (584)
Q Consensus 104 ~~~~aL~~GAdDYL~KP~~~~eL~~aI~ 131 (584)
...+..+ |+++|+.--.+..++...+.
T Consensus 604 ~~~~~~~-G~D~~~~~g~~~~~~l~~l~ 630 (637)
T 1req_B 604 DAAEAEK-LIDGRLFMGMDVVDTLSSTL 630 (637)
T ss_dssp GHHHHHH-HCCCEECTTCCHHHHHHHHH
T ss_pred hhHHHHh-ccceEecCCcCHHHHHHHHH
Confidence 1223334 99999988777777655443
No 314
>2ho3_A Oxidoreductase, GFO/IDH/MOCA family; streptococcus pneumonia reductive methylation, structural genomics, PSI-2, protein initiative; HET: MLY; 2.00A {Streptococcus pneumoniae} PDB: 2ho5_A
Probab=22.98 E-value=5.4e+02 Score=25.12 Aligned_cols=103 Identities=11% Similarity=0.100 Sum_probs=56.6
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCCEEEE
Q 007940 18 LRVLVVDDDLAWLKILEKMLKKCSYEVT-TCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMM 96 (584)
Q Consensus 18 mrVLIVDDd~~~r~~L~~lL~~~gy~V~-~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVIvl 96 (584)
+||.||---..-...+..+.+..+++++ ++....+..+.+.+.. +..-+..| --++ + ...+-+|++
T Consensus 2 ~~vgiiG~G~~g~~~~~~l~~~~~~~~~~v~d~~~~~~~~~~~~~-~~~~~~~~-------~~~~---l--~~~~D~V~i 68 (325)
T 2ho3_A 2 LKLGVIGTGAISHHFIEAAHTSGEYQLVAIYSRKLETAATFASRY-QNIQLFDQ-------LEVF---F--KSSFDLVYI 68 (325)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTSEEEEEEECSSHHHHHHHGGGS-SSCEEESC-------HHHH---H--TSSCSEEEE
T ss_pred eEEEEEeCCHHHHHHHHHHHhCCCeEEEEEEeCCHHHHHHHHHHc-CCCeEeCC-------HHHH---h--CCCCCEEEE
Confidence 5788888766555555554443356655 4443334344443321 11111212 1122 2 234556666
Q ss_pred EcC--CChHHHHhhhhcCCceEEeCCC--CHHHHHHHHHHH
Q 007940 97 SVD--GETSRVMKGVQHGACDYLLKPI--RMKELRNIWQHV 133 (584)
Q Consensus 97 Sa~--~d~~~~~~aL~~GAdDYL~KP~--~~~eL~~aI~~v 133 (584)
+.. ...+.+.+|+++|..=|+.||+ +.++..+.++.+
T Consensus 69 ~tp~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a 109 (325)
T 2ho3_A 69 ASPNSLHFAQAKAALSAGKHVILEKPAVSQPQEWFDLIQTA 109 (325)
T ss_dssp CSCGGGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHH
T ss_pred eCChHHHHHHHHHHHHcCCcEEEecCCcCCHHHHHHHHHHH
Confidence 554 3457788899999988999998 566666655544
No 315
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=22.93 E-value=3.2e+02 Score=22.56 Aligned_cols=68 Identities=15% Similarity=0.195 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhCCCe----EEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCH--HHHHHHHhccCCCCEEEEEc
Q 007940 29 WLKILEKMLKKCSYE----VTTCGLARDALSLLRERKDGYDIVISDVNMPDMDG--FKLLEHVGLEMDLPVIMMSV 98 (584)
Q Consensus 29 ~r~~L~~lL~~~gy~----V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdG--lELL~~Ir~~~~iPVIvlSa 98 (584)
.++.|..+++..|.. ....++..+++....+. ..+|+|++.-+ .+.-+ ..+.+++-...++||+++-.
T Consensus 65 ~~~~l~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~-~~~dliV~G~~-~~~~~~lgs~~~~vl~~~~~pVlvv~~ 138 (141)
T 1jmv_A 65 TQKALLDLAESVDYPISEKLSGSGDLGQVLSDAIEQ-YDVDLLVTGHH-QDFWSKLMSSTRQVMNTIKIDMLVVPL 138 (141)
T ss_dssp HHHHHHHHHHHSSSCCCCEEEEEECHHHHHHHHHHH-TTCCEEEEEEC-CCCHHHHHHHHHHHHTTCCSEEEEEEC
T ss_pred HHHHHHHHHHHcCCCceEEEEecCCHHHHHHHHHHh-cCCCEEEEeCC-CchhhhhcchHHHHHhcCCCCEEEeeC
Confidence 456677777766643 23445655555443332 34899999988 43211 13445554456799998864
No 316
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=22.90 E-value=1.8e+02 Score=27.31 Aligned_cols=66 Identities=9% Similarity=0.208 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHhCCCeEEEECCH------HHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCCEEEEEcC
Q 007940 28 AWLKILEKMLKKCSYEVTTCGLA------RDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVD 99 (584)
Q Consensus 28 ~~r~~L~~lL~~~gy~V~~a~~~------~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVIvlSa~ 99 (584)
.+...+++.+++.||.+..+... .+.++.+... .+|.||+--.... + +.++.+. ...+|||++...
T Consensus 30 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~vdgiIi~~~~~~-~--~~~~~l~-~~~iPvV~~~~~ 101 (292)
T 3k4h_A 30 EVIRGISSFAHVEGYALYMSTGETEEEIFNGVVKMVQGR--QIGGIILLYSREN-D--RIIQYLH-EQNFPFVLIGKP 101 (292)
T ss_dssp HHHHHHHHHHHHTTCEEEECCCCSHHHHHHHHHHHHHTT--CCCEEEESCCBTT-C--HHHHHHH-HTTCCEEEESCC
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHcC--CCCEEEEeCCCCC-h--HHHHHHH-HCCCCEEEECCC
Confidence 34566777888899988865432 2234444443 4888887321111 1 4455553 357899988543
No 317
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=22.82 E-value=3.7e+02 Score=27.22 Aligned_cols=66 Identities=14% Similarity=-0.021 Sum_probs=43.8
Q ss_pred EEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCCEEEEEcCCChHHHHhhhhcCCceE
Q 007940 44 VTTCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDY 116 (584)
Q Consensus 44 V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdDY 116 (584)
.+.+.+-+++.++++. ++|+|.+|-. +--++-+.++....-..|..|+.-+.+.+.+..+.|+|.+
T Consensus 213 eVEvdtlde~~eAl~a---GaD~I~LDn~----~~~~l~~av~~i~~~v~ieaSGGI~~~~i~~~a~tGVD~i 278 (298)
T 3gnn_A 213 QIEVETLDQLRTALAH---GARSVLLDNF----TLDMMRDAVRVTEGRAVLEVSGGVNFDTVRAIAETGVDRI 278 (298)
T ss_dssp EEEESSHHHHHHHHHT---TCEEEEEESC----CHHHHHHHHHHHTTSEEEEEESSCSTTTHHHHHHTTCSEE
T ss_pred EEEeCCHHHHHHHHHc---CCCEEEECCC----CHHHHHHHHHHhCCCCeEEEEcCCCHHHHHHHHHcCCCEE
Confidence 3457888888888874 3899999963 3222222233222334566788888888888889999654
No 318
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}
Probab=22.69 E-value=5.6e+02 Score=25.22 Aligned_cols=104 Identities=13% Similarity=0.105 Sum_probs=59.3
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCCEEE
Q 007940 17 GLRVLVVDDDLAWLKILEKMLKKCSYEVT-TCGLARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIM 95 (584)
Q Consensus 17 gmrVLIVDDd~~~r~~L~~lL~~~gy~V~-~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVIv 95 (584)
.+||.||---..-+..+..+.+..+++++ ++....+..+.+.+. +.+-..+ + ++.+-....+-+|+
T Consensus 4 ~~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~---~g~~~~~------~----~~~~l~~~~~D~V~ 70 (344)
T 3euw_A 4 TLRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQRLAEA---NGAEAVA------S----PDEVFARDDIDGIV 70 (344)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHT---TTCEEES------S----HHHHTTCSCCCEEE
T ss_pred ceEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHH---cCCceeC------C----HHHHhcCCCCCEEE
Confidence 47999999876655555555444466766 444434444444332 1211111 1 12332234455565
Q ss_pred EEcC--CChHHHHhhhhcCCceEEeCCCC--HHHHHHHHHHH
Q 007940 96 MSVD--GETSRVMKGVQHGACDYLLKPIR--MKELRNIWQHV 133 (584)
Q Consensus 96 lSa~--~d~~~~~~aL~~GAdDYL~KP~~--~~eL~~aI~~v 133 (584)
++.. ...+.+..|+++|..=++.||+. .++..+.++.+
T Consensus 71 i~tp~~~h~~~~~~al~~gk~v~~EKP~~~~~~~~~~l~~~a 112 (344)
T 3euw_A 71 IGSPTSTHVDLITRAVERGIPALCEKPIDLDIEMVRACKEKI 112 (344)
T ss_dssp ECSCGGGHHHHHHHHHHTTCCEEECSCSCSCHHHHHHHHHHH
T ss_pred EeCCchhhHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHH
Confidence 5543 44567889999999999999964 55666555444
No 319
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0
Probab=22.55 E-value=1.3e+02 Score=26.24 Aligned_cols=57 Identities=16% Similarity=0.195 Sum_probs=34.5
Q ss_pred CCEEEEEeCCHHH----------HHHHHHHHHhCCCeEEEE--C----CHHHHHHHHHhc--CCCceEEEEecCC
Q 007940 17 GLRVLVVDDDLAW----------LKILEKMLKKCSYEVTTC--G----LARDALSLLRER--KDGYDIVISDVNM 73 (584)
Q Consensus 17 gmrVLIVDDd~~~----------r~~L~~lL~~~gy~V~~a--~----~~~eAL~~L~~~--~~~pDLVIlDi~M 73 (584)
+.||+++-|+-+. ...+.+.|...+..+... + +..+.+..+... ...||+|++-+..
T Consensus 2 ~~~i~~~GDSit~G~g~~~~~~~~~~l~~~l~~~~~~~~v~n~g~~G~~~~~~~~~~~~~~~~~~pd~vvi~~G~ 76 (185)
T 3hp4_A 2 DNTILILGDXLSAAYGLQQEEGWVKLLQDKYDAEQSDIVLINASISGETSGGALRRLDALLEQYEPTHVLIELGA 76 (185)
T ss_dssp CEEEEEEECTTTTTTTSCGGGSHHHHHHHHHHHTTCCEEEEECCCTTCCHHHHHHHHHHHHHHHCCSEEEEECCH
T ss_pred CCeEEEECCcccccCCCCCcccHHHHHHHHHHhcCCcEEEEECCcCCccHHHHHHHHHHHHhhcCCCEEEEEeec
Confidence 4588888887654 677888888765443332 1 234444444321 0138999997754
No 320
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}
Probab=22.49 E-value=1.6e+02 Score=30.86 Aligned_cols=58 Identities=14% Similarity=0.221 Sum_probs=31.6
Q ss_pred CCCCCCCEEEEEeCCHHHHHHHHHHHHhCCC-eEEEE-----------------CCHHHHHHHHHhcCCCceEEEEec
Q 007940 12 TFNPAGLRVLVVDDDLAWLKILEKMLKKCSY-EVTTC-----------------GLARDALSLLRERKDGYDIVISDV 71 (584)
Q Consensus 12 ~f~p~gmrVLIVDDd~~~r~~L~~lL~~~gy-~V~~a-----------------~~~~eAL~~L~~~~~~pDLVIlDi 71 (584)
...|..|||||+-.......+...+.+..+. .+.++ .+.+..++.+++. .+|+|+...
T Consensus 16 ~~~p~~m~ilvlG~ggre~ala~~l~~s~~v~~v~~~pgn~g~~~~~~~~~i~~~d~~~l~~~a~~~--~id~vv~g~ 91 (442)
T 3lp8_A 16 TQGPGSMNVLVIGSGGREHSMLHHIRKSTLLNKLFIAPGREGMSGLADIIDIDINSTIEVIQVCKKE--KIELVVIGP 91 (442)
T ss_dssp ----CCEEEEEEECSHHHHHHHHHHTTCTTEEEEEEEECCGGGTTTSEECCCCTTCHHHHHHHHHHT--TCCEEEECS
T ss_pred cCCCCCCEEEEECCChHHHHHHHHHHhCCCCCEEEEECCChHHhhccceeecCcCCHHHHHHHHHHh--CCCEEEECC
Confidence 3457789999999986554444444333332 23322 1334555566654 489999753
No 321
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=22.38 E-value=2.8e+02 Score=26.10 Aligned_cols=65 Identities=12% Similarity=0.129 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHhCCCeEEEECCH------HHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCCEEEEEc
Q 007940 28 AWLKILEKMLKKCSYEVTTCGLA------RDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSV 98 (584)
Q Consensus 28 ~~r~~L~~lL~~~gy~V~~a~~~------~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVIvlSa 98 (584)
.+...+++.+++.||.+..+... .+.++.+... .+|.||+--.... + +.++.+. ...+|||++..
T Consensus 25 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~--~vdgiIi~~~~~~-~--~~~~~l~-~~~iPvV~~~~ 95 (287)
T 3bbl_A 25 QFLSSMVREAGAVNYFVLPFPFSEDRSQIDIYRDLIRSG--NVDGFVLSSINYN-D--PRVQFLL-KQKFPFVAFGR 95 (287)
T ss_dssp HHHHHHHHHHHHTTCEEEECCCCSSTTCCHHHHHHHHTT--CCSEEEECSCCTT-C--HHHHHHH-HTTCCEEEESC
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCCchHHHHHHHHHHHcC--CCCEEEEeecCCC-c--HHHHHHH-hcCCCEEEECC
Confidence 45667788888999998765421 3456666543 3898887432222 2 4555553 35789988753
No 322
>3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni}
Probab=22.36 E-value=46 Score=33.05 Aligned_cols=55 Identities=18% Similarity=0.316 Sum_probs=0.0
Q ss_pred HHHHHHHhccCCCCEEEEE------cCCChHHHHhhhhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 007940 79 FKLLEHVGLEMDLPVIMMS------VDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 136 (584)
Q Consensus 79 lELL~~Ir~~~~iPVIvlS------a~~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~vlrr 136 (584)
+++++++|.. +|+|+|+ .++-.....+|.++|+++.|+--+..+| ...+....++
T Consensus 79 ~~~~~~~r~~--~Pivlm~Y~N~i~~~G~e~F~~~~~~aGvdG~IipDLP~eE-~~~~~~~~~~ 139 (252)
T 3tha_A 79 FELLARIKTK--KALVFMVYYNLIFSYGLEKFVKKAKSLGICALIVPELSFEE-SDDLIKECER 139 (252)
T ss_dssp HHHHHHCCCS--SEEEEECCHHHHHHHCHHHHHHHHHHTTEEEEECTTCCGGG-CHHHHHHHHH
T ss_pred HHHHHHHhcC--CCEEEEeccCHHHHhhHHHHHHHHHHcCCCEEEeCCCCHHH-HHHHHHHHHH
No 323
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=22.27 E-value=1.6e+02 Score=31.58 Aligned_cols=65 Identities=17% Similarity=0.108 Sum_probs=45.1
Q ss_pred HHHHHHHHhcCCCceEEEEecCCCCCC-HHHHHHHHhcc-CCCCEEEEEcCCChHHHHhhhhcCCceEEe
Q 007940 51 RDALSLLRERKDGYDIVISDVNMPDMD-GFKLLEHVGLE-MDLPVIMMSVDGETSRVMKGVQHGACDYLL 118 (584)
Q Consensus 51 ~eAL~~L~~~~~~pDLVIlDi~MPdmd-GlELL~~Ir~~-~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~ 118 (584)
.+..+.+.+. ++|+|.+|...+... -.+.+++++.. +.+|||+- .-...+.+..+.++||+...+
T Consensus 231 ~~~a~~l~~a--G~d~I~id~a~g~~~~~~~~v~~i~~~~p~~~Vi~g-~v~t~e~a~~l~~aGaD~I~v 297 (490)
T 4avf_A 231 GERVAALVAA--GVDVVVVDTAHGHSKGVIERVRWVKQTFPDVQVIGG-NIATAEAAKALAEAGADAVKV 297 (490)
T ss_dssp HHHHHHHHHT--TCSEEEEECSCCSBHHHHHHHHHHHHHCTTSEEEEE-EECSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHhhc--ccceEEecccCCcchhHHHHHHHHHHHCCCceEEEe-eeCcHHHHHHHHHcCCCEEEE
Confidence 3444445443 489999998876543 35778888655 47788763 234567788999999998775
No 324
>2gl5_A Putative dehydratase protein; structural genomics, protein structure initiati nysgxrc; 1.60A {Salmonella typhimurium} SCOP: c.1.11.2 d.54.1.1 PDB: 4e6m_A*
Probab=22.23 E-value=2.1e+02 Score=29.49 Aligned_cols=79 Identities=6% Similarity=-0.014 Sum_probs=51.8
Q ss_pred CHHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCCEEEEEcCCChHHHHhhhhcCCceEE-eCCCCHHHHH
Q 007940 49 LARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYL-LKPIRMKELR 127 (584)
Q Consensus 49 ~~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL-~KP~~~~eL~ 127 (584)
+..+|++.++... .+++..+.--+|. +-++.+++++....+||+.-=...+...+.++++.|+.|++ +|+...--+.
T Consensus 230 ~~~~ai~~~~~l~-~~~i~~iE~P~~~-~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit 307 (410)
T 2gl5_A 230 GTNSAIQFAKAIE-KYRIFLYEEPIHP-LNSDNMQKVSRSTTIPIATGERSYTRWGYRELLEKQSIAVAQPDLCLCGGIT 307 (410)
T ss_dssp CHHHHHHHHHHHG-GGCEEEEECSSCS-SCHHHHHHHHHHCSSCEEECTTCCTTHHHHHHHHTTCCSEECCCTTTTTHHH
T ss_pred CHHHHHHHHHHHH-hcCCCeEECCCCh-hhHHHHHHHHhhCCCCEEecCCcCCHHHHHHHHHcCCCCEEecCccccCCHH
Confidence 4578888776642 3677777755553 33666677766667887654333466788899999987764 7887654444
Q ss_pred HH
Q 007940 128 NI 129 (584)
Q Consensus 128 ~a 129 (584)
.+
T Consensus 308 ~~ 309 (410)
T 2gl5_A 308 EG 309 (410)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 325
>2i1o_A Nicotinate phosphoribosyltransferase; ZIN ION, zinc finger M structural genomics, PSI, protein structure initiative; 2.40A {Thermoplasma acidophilum} PDB: 1ytd_A* 1yte_A* 1ytk_A
Probab=22.16 E-value=4.3e+02 Score=27.65 Aligned_cols=85 Identities=19% Similarity=0.082 Sum_probs=55.7
Q ss_pred HHHHHHHHHhCCC---eEEEECC----HHHHHHHHHhcCCCceEEEEecCCCC-CCHHHHHHHHhc------cCCCCEEE
Q 007940 30 LKILEKMLKKCSY---EVTTCGL----ARDALSLLRERKDGYDIVISDVNMPD-MDGFKLLEHVGL------EMDLPVIM 95 (584)
Q Consensus 30 r~~L~~lL~~~gy---~V~~a~~----~~eAL~~L~~~~~~pDLVIlDi~MPd-mdGlELL~~Ir~------~~~iPVIv 95 (584)
.+.++.+.+..+. .+..+.+ ..+|++.+... ..+|.|.+|-.-|. .|-.++.++++. .++ ..|+
T Consensus 197 ~~A~~~~~~~~p~~~~~~vlvDT~d~~~~~al~~a~~l-~~~d~IrlDs~~~~~gd~~~~v~~v~~~ld~~G~~~-~~I~ 274 (398)
T 2i1o_A 197 EEAWKLTLENTKNGQKSVLLIDTYMDEKFAAIKIAEMF-DKVDYIRLDTPSSRRGNFEALIREVRWELALRGRSD-IKIM 274 (398)
T ss_dssp HHHHHHHHHTCCTTSCCEEECCSSSCHHHHHHHHHTTC-SCCCEEEECCCGGGCSCHHHHHHHHHHHHHHTTCTT-SEEE
T ss_pred HHHHHHHHHhCCCCCCEEEEEcCchHHHHHHHHHHHhh-cCCcEEEeCCCCCCcccHHHHHHHHHHHHHhCCCCc-eEEE
Confidence 5677777776664 2334444 46777766542 25899999964331 455666665542 123 4788
Q ss_pred EEcCCChHHHHhhhhcCCceE
Q 007940 96 MSVDGETSRVMKGVQHGACDY 116 (584)
Q Consensus 96 lSa~~d~~~~~~aL~~GAdDY 116 (584)
+|..-+.+.+.+..+.|++-|
T Consensus 275 aSggl~~~~i~~l~~~GvD~~ 295 (398)
T 2i1o_A 275 VSGGLDENTVKKLREAGAEAF 295 (398)
T ss_dssp EESSCCHHHHHHHHHTTCCEE
T ss_pred EeCCCCHHHHHHHHHcCCCEE
Confidence 899999999999999998444
No 326
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=22.14 E-value=3e+02 Score=26.46 Aligned_cols=54 Identities=13% Similarity=0.100 Sum_probs=39.0
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhCCC-eE-EEECCHHHHHHHHHhcCCCceEEEEec
Q 007940 18 LRVLVVDDDLAWLKILEKMLKKCSY-EV-TTCGLARDALSLLRERKDGYDIVISDV 71 (584)
Q Consensus 18 mrVLIVDDd~~~r~~L~~lL~~~gy-~V-~~a~~~~eAL~~L~~~~~~pDLVIlDi 71 (584)
.+|..+|=++...+.+++.++..|. .+ ....++.+....+......+|+|++|.
T Consensus 109 ~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~d~ 164 (274)
T 3ajd_A 109 GTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKILLDA 164 (274)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEEEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEEEEcC
Confidence 6899999999999999999998875 33 345666655433321123599999995
No 327
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=22.11 E-value=2.2e+02 Score=26.87 Aligned_cols=63 Identities=22% Similarity=0.243 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhCCCeEEEECC---HH---HHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCCEEEEEc
Q 007940 29 WLKILEKMLKKCSYEVTTCGL---AR---DALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSV 98 (584)
Q Consensus 29 ~r~~L~~lL~~~gy~V~~a~~---~~---eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVIvlSa 98 (584)
+...+++.+++.||.+..+.. .. +.++.+... .+|.||+--. ..+ -+.++.+. ..+|||++..
T Consensus 26 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~--~vdgiI~~~~--~~~-~~~~~~l~--~~iPvV~~~~ 94 (285)
T 3c3k_A 26 VVKGIEKTAEKNGYRILLCNTESDLARSRSCLTLLSGK--MVDGVITMDA--LSE-LPELQNII--GAFPWVQCAE 94 (285)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHTHHHHTT--CCSEEEECCC--GGG-HHHHHHHH--TTSSEEEESS
T ss_pred HHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhC--CCCEEEEeCC--CCC-hHHHHHHh--cCCCEEEEcc
Confidence 445667778889998875543 22 334444443 4898887421 111 24556665 6799998853
No 328
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}
Probab=22.09 E-value=2.7e+02 Score=25.35 Aligned_cols=86 Identities=12% Similarity=-0.079 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhCCCeEEE-EC---CHHHHHHHHHhcCCCceEE-EEecCC---CCCCHH-HHHHHHhccCCCCEEEEEcC
Q 007940 29 WLKILEKMLKKCSYEVTT-CG---LARDALSLLRERKDGYDIV-ISDVNM---PDMDGF-KLLEHVGLEMDLPVIMMSVD 99 (584)
Q Consensus 29 ~r~~L~~lL~~~gy~V~~-a~---~~~eAL~~L~~~~~~pDLV-IlDi~M---PdmdGl-ELL~~Ir~~~~iPVIvlSa~ 99 (584)
..+.+.+.+++.|..+.. .. +..+.++.+.+. ..|+| +.=... ++.+.. +.+++++.. ++|+++. .-
T Consensus 91 ~~~~~~~~~~~~g~~~gv~~~s~~~p~~~~~~~~~~--g~d~v~~~~~~~~~~~g~~~~~~~i~~~~~~-~~pi~v~-GG 166 (207)
T 3ajx_A 91 TIAGAVKAAQAHNKGVVVDLIGIEDKATRAQEVRAL--GAKFVEMHAGLDEQAKPGFDLNGLLAAGEKA-RVPFSVA-GG 166 (207)
T ss_dssp HHHHHHHHHHHHTCEEEEECTTCSSHHHHHHHHHHT--TCSEEEEECCHHHHTSTTCCTHHHHHHHHHH-TSCEEEE-SS
T ss_pred HHHHHHHHHHHcCCceEEEEecCCChHHHHHHHHHh--CCCEEEEEecccccccCCCchHHHHHHhhCC-CCCEEEE-CC
Confidence 344455555555655533 32 445544444443 36877 432211 222222 555554322 6777655 44
Q ss_pred CChHHHHhhhhcCCceEEe
Q 007940 100 GETSRVMKGVQHGACDYLL 118 (584)
Q Consensus 100 ~d~~~~~~aL~~GAdDYL~ 118 (584)
-..+.+.+++++||+.+++
T Consensus 167 I~~~~~~~~~~aGad~vvv 185 (207)
T 3ajx_A 167 VKVATIPAVQKAGAEVAVA 185 (207)
T ss_dssp CCGGGHHHHHHTTCSEEEE
T ss_pred cCHHHHHHHHHcCCCEEEE
Confidence 4467788899999998763
No 329
>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*
Probab=22.09 E-value=5.6e+02 Score=28.22 Aligned_cols=101 Identities=18% Similarity=0.265 Sum_probs=62.6
Q ss_pred CCCEEEEEeC----CHHHHHHHHHHHHhCC-CeEE--EECCHHHHHHHHHhcCCCceEEEEecC--------------CC
Q 007940 16 AGLRVLVVDD----DLAWLKILEKMLKKCS-YEVT--TCGLARDALSLLRERKDGYDIVISDVN--------------MP 74 (584)
Q Consensus 16 ~gmrVLIVDD----d~~~r~~L~~lL~~~g-y~V~--~a~~~~eAL~~L~~~~~~pDLVIlDi~--------------MP 74 (584)
+|..+++||- .....+.++.+-+..+ ..|+ -+.+++.|..++.. +.|.|.+-+. .|
T Consensus 292 AGvD~iviD~ahGhs~~v~~~i~~ik~~~p~~~viaGNVaT~e~a~~Li~a---GAD~vkVGiGpGSiCtTr~v~GvG~P 368 (556)
T 4af0_A 292 AGLDVVVLDSSQGNSVYQIEFIKWIKQTYPKIDVIAGNVVTREQAAQLIAA---GADGLRIGMGSGSICITQEVMAVGRP 368 (556)
T ss_dssp TTCCEEEECCSCCCSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHH---TCSEEEECSSCSTTBCCTTTCCSCCC
T ss_pred cCCcEEEEeccccccHHHHHHHHHHHhhCCcceEEeccccCHHHHHHHHHc---CCCEEeecCCCCcccccccccCCCCc
Confidence 3556777774 3445555555555543 2333 34567777776654 2688877663 22
Q ss_pred CCCHHHHHHHHhccCCCCEEEEEcCCChHHHHhhhhcCCceEEeC
Q 007940 75 DMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLK 119 (584)
Q Consensus 75 dmdGlELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~K 119 (584)
....+--+........+|||.=-.-.....+.+|+.+||+...+=
T Consensus 369 Q~tAi~~~a~~a~~~~vpvIADGGI~~sGDi~KAlaaGAd~VMlG 413 (556)
T 4af0_A 369 QGTAVYAVAEFASRFGIPCIADGGIGNIGHIAKALALGASAVMMG 413 (556)
T ss_dssp HHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred HHHHHHHHHHHHHHcCCCEEecCCcCcchHHHHHhhcCCCEEEEc
Confidence 222222233333445799998777788899999999999988764
No 330
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=21.90 E-value=3e+02 Score=25.67 Aligned_cols=66 Identities=9% Similarity=0.114 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHhCCCeEEEECCH---H---HHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCCEEEEEc
Q 007940 28 AWLKILEKMLKKCSYEVTTCGLA---R---DALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSV 98 (584)
Q Consensus 28 ~~r~~L~~lL~~~gy~V~~a~~~---~---eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVIvlSa 98 (584)
.+...++..+++.||.+..+... . +.++.+... .+|.||+--.. .+. +.++.+.....+|||++..
T Consensus 38 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~--~vdgii~~~~~--~~~-~~~~~l~~~~~iPvV~~~~ 109 (296)
T 3brq_A 38 ELLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLDL--RCDAIMIYPRF--LSV-DEIDDIIDAHSQPIMVLNR 109 (296)
T ss_dssp HHHHHHHHHHHHTTCEEEEECCTTSHHHHHHHHHHHHHT--TCSEEEEECSS--SCH-HHHHHHHHTCSSCEEEESC
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhc--CCCEEEEecCC--CCh-HHHHHHHhcCCCCEEEEcc
Confidence 45667788888899988766432 2 334444443 38888774322 222 4455554325799988754
No 331
>3cni_A Putative ABC type-2 transporter; structural genomics, thermotoga MARI PSI-2, protein structure initiative; 2.30A {Thermotoga maritima MSB8}
Probab=21.87 E-value=1.5e+02 Score=26.21 Aligned_cols=53 Identities=19% Similarity=0.277 Sum_probs=30.5
Q ss_pred CCCCCEEEEEeCCH-HHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEE
Q 007940 14 NPAGLRVLVVDDDL-AWLKILEKMLKKCSYEVT-TCGLARDALSLLRERKDGYDIVIS 69 (584)
Q Consensus 14 ~p~gmrVLIVDDd~-~~r~~L~~lL~~~gy~V~-~a~~~~eAL~~L~~~~~~pDLVIl 69 (584)
++.+++|.|||.|. ...+.|.+.|. ....+. ...+..+|.+.++..+ ++.+|.
T Consensus 7 ~~~~~~vaVvd~D~s~~s~~l~~~l~-~~~~~~~~~~s~~ea~~~l~~g~--~~~~l~ 61 (156)
T 3cni_A 7 STVGQKVAIVREDTGTIAELAEKALG-NMVDIVYAGSDLKEAEEAVKKEK--APAIIV 61 (156)
T ss_dssp ----CEEEEEECCCSHHHHHHHHHHH-TSSEEEEEESCHHHHHHHHHHHT--CSEEEE
T ss_pred CCCCCcEEEEECCCCHHHHHHHHHhc-CcEEEEecCCCHHHHHHHHHcCC--eeEEEE
Confidence 46788999998654 33344444555 333322 1368899999998865 665554
No 332
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51
Probab=21.87 E-value=1.9e+02 Score=29.27 Aligned_cols=55 Identities=22% Similarity=0.240 Sum_probs=38.8
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCCe---E-EEECCHHHHHHHHHhcCCCceEEEEec
Q 007940 17 GLRVLVVDDDLAWLKILEKMLKKCSYE---V-TTCGLARDALSLLRERKDGYDIVISDV 71 (584)
Q Consensus 17 gmrVLIVDDd~~~r~~L~~lL~~~gy~---V-~~a~~~~eAL~~L~~~~~~pDLVIlDi 71 (584)
+.+|..||-++...+..++.++..+.. + ....++.+.+..+......||+||+|.
T Consensus 175 ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii~dP 233 (332)
T 2igt_A 175 GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILTDP 233 (332)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEECC
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEEECC
Confidence 348999999999999999888766531 3 355677666554332223599999985
No 333
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=21.79 E-value=2.6e+02 Score=27.97 Aligned_cols=34 Identities=24% Similarity=0.140 Sum_probs=22.6
Q ss_pred CCCEEEEEeCC----HHHHHHHHHHHHhCCCeEEEECC
Q 007940 16 AGLRVLVVDDD----LAWLKILEKMLKKCSYEVTTCGL 49 (584)
Q Consensus 16 ~gmrVLIVDDd----~~~r~~L~~lL~~~gy~V~~a~~ 49 (584)
..||||++-.. ..-...|...|.+.|++|..++.
T Consensus 19 ~~MrIl~~~~~~~Ghv~~~~~La~~L~~~GheV~v~~~ 56 (398)
T 3oti_A 19 RHMRVLFVSSPGIGHLFPLIQLAWGFRTAGHDVLIAVA 56 (398)
T ss_dssp CCCEEEEECCSSHHHHGGGHHHHHHHHHTTCEEEEEES
T ss_pred hcCEEEEEcCCCcchHhHHHHHHHHHHHCCCEEEEecc
Confidence 35899999753 11224566777888998886644
No 334
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*
Probab=21.69 E-value=2.7e+02 Score=28.41 Aligned_cols=54 Identities=22% Similarity=0.204 Sum_probs=40.7
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhCCCe--EEEECCHHHHHHHHHhcCCCceEEEEec
Q 007940 18 LRVLVVDDDLAWLKILEKMLKKCSYE--VTTCGLARDALSLLRERKDGYDIVISDV 71 (584)
Q Consensus 18 mrVLIVDDd~~~r~~L~~lL~~~gy~--V~~a~~~~eAL~~L~~~~~~pDLVIlDi 71 (584)
.+|..||-++...+..+..++..|.. .....++.+.+..+......||+|++|.
T Consensus 232 ~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~dp 287 (382)
T 1wxx_A 232 REVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDP 287 (382)
T ss_dssp EEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEECC
Confidence 47999999999999999998877642 3456777777665543234599999985
No 335
>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans}
Probab=21.64 E-value=4.7e+02 Score=27.02 Aligned_cols=87 Identities=14% Similarity=0.051 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHhCCCeEEE--E---CCHHHHHHHHHhcCCCceEEEEecCCC---------------------CCCHHHH
Q 007940 28 AWLKILEKMLKKCSYEVTT--C---GLARDALSLLRERKDGYDIVISDVNMP---------------------DMDGFKL 81 (584)
Q Consensus 28 ~~r~~L~~lL~~~gy~V~~--a---~~~~eAL~~L~~~~~~pDLVIlDi~MP---------------------dmdGlEL 81 (584)
.+.+.++.+-+..+.-|.. + .+.++|..+.+. ++|.|.++-. . +....+.
T Consensus 193 ~~~~~I~~l~~~~~~PVivK~vg~g~s~e~A~~l~~a---Gad~I~V~g~-GGt~~a~ie~~r~~~~~~~~~~g~pt~~~ 268 (365)
T 3sr7_A 193 SWKKHLSDYAKKLQLPFILKEVGFGMDVKTIQTAIDL---GVKTVDISGR-GGTSFAYIENRRGGNRSYLNQWGQTTAQV 268 (365)
T ss_dssp HHHHHHHHHHHHCCSCEEEEECSSCCCHHHHHHHHHH---TCCEEECCCB-C--------------CGGGTTCSCBHHHH
T ss_pred HHHHHHHHHHHhhCCCEEEEECCCCCCHHHHHHHHHc---CCCEEEEeCC-CCcccchhhccccccccccccccccHHHH
Confidence 3456677766665544442 3 356666665543 3788877543 1 1223455
Q ss_pred HHHHhcc-CCCCEEEEEcCCChHHHHhhhhcCCceEEe
Q 007940 82 LEHVGLE-MDLPVIMMSVDGETSRVMKGVQHGACDYLL 118 (584)
Q Consensus 82 L~~Ir~~-~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~ 118 (584)
+..++.. ..+|||.-..-.....+.+++.+||+...+
T Consensus 269 L~~v~~~~~~ipvia~GGI~~g~Dv~KaLalGAdaV~i 306 (365)
T 3sr7_A 269 LLNAQPLMDKVEILASGGIRHPLDIIKALVLGAKAVGL 306 (365)
T ss_dssp HHHHGGGTTTSEEEECSSCCSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHhcCCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 5555432 368888777778889999999999998654
No 336
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=21.58 E-value=2.4e+02 Score=28.93 Aligned_cols=54 Identities=19% Similarity=0.250 Sum_probs=40.9
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhCCC---eEE-EECCHHHHHHHHHhcCCCceEEEEec
Q 007940 18 LRVLVVDDDLAWLKILEKMLKKCSY---EVT-TCGLARDALSLLRERKDGYDIVISDV 71 (584)
Q Consensus 18 mrVLIVDDd~~~r~~L~~lL~~~gy---~V~-~a~~~~eAL~~L~~~~~~pDLVIlDi 71 (584)
-+|.-||-++...+..++-++..|. .+. ...++.+.+..+......||+|++|.
T Consensus 244 ~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii~dp 301 (396)
T 3c0k_A 244 SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDP 301 (396)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEEECC
Confidence 4899999999999999999887776 343 56777776665543234599999985
No 337
>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*
Probab=21.35 E-value=2.5e+02 Score=27.63 Aligned_cols=57 Identities=16% Similarity=0.014 Sum_probs=35.0
Q ss_pred Cce-EEEEecCCCCCCH-----------HHHHHHHhccCCCCEEEEEcC-CChHH----HHhhhhcCCceEEeC
Q 007940 63 GYD-IVISDVNMPDMDG-----------FKLLEHVGLEMDLPVIMMSVD-GETSR----VMKGVQHGACDYLLK 119 (584)
Q Consensus 63 ~pD-LVIlDi~MPdmdG-----------lELL~~Ir~~~~iPVIvlSa~-~d~~~----~~~aL~~GAdDYL~K 119 (584)
.+| .|-+.+.-|...| .++++.++...++||++-... -+.+. +..+.++||+.+++-
T Consensus 119 g~d~~iein~~~P~~~g~~~~g~~~e~~~~iv~~vr~~~~~Pv~vKi~~~~~~~~~~~~a~~~~~~G~d~i~v~ 192 (311)
T 1jub_A 119 DFSGITELNLSCPNVPGEPQLAYDFEATEKLLKEVFTFFTKPLGVKLPPYFDLVHFDIMAEILNQFPLTYVNSV 192 (311)
T ss_dssp CCCSEEEEESCCCCSSSCCCGGGCHHHHHHHHHHHTTTCCSCEEEEECCCCSHHHHHHHHHHHTTSCCCEEEEC
T ss_pred CCCeEEEEeccCCCCCCcccccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHHHHHHcCCcEEEec
Confidence 378 8888876554322 466777766567898774432 22222 456667788776653
No 338
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=21.14 E-value=2.8e+02 Score=23.55 Aligned_cols=33 Identities=21% Similarity=0.419 Sum_probs=15.8
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHH
Q 007940 20 VLVVDDDLAWLKILEKMLKKCSYEVTTCGLARD 52 (584)
Q Consensus 20 VLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~e 52 (584)
|+|.|.+...++.+..-.++.||+|.++++..+
T Consensus 80 iiiydqdqnrleefsrevrrrgfevrtvtspdd 112 (134)
T 2l69_A 80 IIIYDQDQNRLEEFSREVRRRGFEVRTVTSPDD 112 (134)
T ss_dssp EEEECSCHHHHHHHHHHHHHTTCCEEEESSHHH
T ss_pred EEEEeCchhHHHHHHHHHHhcCceEEEecChHH
Confidence 334444444444444444555555555554443
No 339
>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4
Probab=21.13 E-value=1.3e+02 Score=29.56 Aligned_cols=85 Identities=8% Similarity=-0.019 Sum_probs=50.9
Q ss_pred HHHHHHHH---hCCCeEE-EECCHHHHHHHHHhcCCCceEEEEec-CCCC-CCHHHHHHHHhcc-C----CCCEEEEEcC
Q 007940 31 KILEKMLK---KCSYEVT-TCGLARDALSLLRERKDGYDIVISDV-NMPD-MDGFKLLEHVGLE-M----DLPVIMMSVD 99 (584)
Q Consensus 31 ~~L~~lL~---~~gy~V~-~a~~~~eAL~~L~~~~~~pDLVIlDi-~MPd-mdGlELL~~Ir~~-~----~iPVIvlSa~ 99 (584)
..++++++ ..|..+. .+.+..|+..++... .|+|=+.. .+-+ .-.++.++++... + ++|+|..++-
T Consensus 141 ~~l~~l~~~a~~lGl~~lvev~~~~E~~~a~~~g---ad~IGvn~~~l~~~~~dl~~~~~L~~~i~~~~~~~~vIAegGI 217 (254)
T 1vc4_A 141 ELTGAYLEEARRLGLEALVEVHTERELEIALEAG---AEVLGINNRDLATLHINLETAPRLGRLARKRGFGGVLVAESGY 217 (254)
T ss_dssp GGHHHHHHHHHHHTCEEEEEECSHHHHHHHHHHT---CSEEEEESBCTTTCCBCTTHHHHHHHHHHHTTCCSEEEEESCC
T ss_pred HHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcC---CCEEEEccccCcCCCCCHHHHHHHHHhCccccCCCeEEEEcCC
Confidence 44555554 5677654 567777776655542 46664432 1111 0113333343221 1 6788887777
Q ss_pred CChHHHHhhhhcCCceEEeC
Q 007940 100 GETSRVMKGVQHGACDYLLK 119 (584)
Q Consensus 100 ~d~~~~~~aL~~GAdDYL~K 119 (584)
...+.+.++.+ ||+.+++=
T Consensus 218 ~s~~dv~~l~~-Ga~gvlVG 236 (254)
T 1vc4_A 218 SRKEELKALEG-LFDAVLIG 236 (254)
T ss_dssp CSHHHHHTTTT-TCSEEEEC
T ss_pred CCHHHHHHHHc-CCCEEEEe
Confidence 88999999999 99999863
No 340
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=20.99 E-value=3.3e+02 Score=25.71 Aligned_cols=64 Identities=8% Similarity=0.137 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhCCCeEEEECC---H---HHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCCEEEEEc
Q 007940 29 WLKILEKMLKKCSYEVTTCGL---A---RDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSV 98 (584)
Q Consensus 29 ~r~~L~~lL~~~gy~V~~a~~---~---~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVIvlSa 98 (584)
+...+++.+++.||.+..+.. . .+.++.+... .+|.||+--. ..+ -+.++.+. ...+|||++..
T Consensus 34 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~--~vdgiIi~~~--~~~-~~~~~~l~-~~~iPvV~~~~ 103 (289)
T 2fep_A 34 LARGIEDIATMYKYNIILSNSDQNMEKELHLLNTMLGK--QVDGIVFMGG--NIT-DEHVAEFK-RSPVPIVLAAS 103 (289)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHT--TCSEEEECCS--CCC-HHHHHHHH-HSSSCEEEESC
T ss_pred HHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhC--CCCEEEEecC--CCC-HHHHHHHH-hcCCCEEEEcc
Confidence 445667778889998875533 2 2344444443 3888887432 122 34455553 35799998753
No 341
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=20.92 E-value=54 Score=32.64 Aligned_cols=54 Identities=19% Similarity=0.163 Sum_probs=37.4
Q ss_pred HHHHHHHhccCCCCEEEEEcC------CChHHHHhhhhcCCceEEeCCCCHHHHHHHHHH
Q 007940 79 FKLLEHVGLEMDLPVIMMSVD------GETSRVMKGVQHGACDYLLKPIRMKELRNIWQH 132 (584)
Q Consensus 79 lELL~~Ir~~~~iPVIvlSa~------~d~~~~~~aL~~GAdDYL~KP~~~~eL~~aI~~ 132 (584)
+++++.++...++|||+|+-. +....+..+.++||+++|.--+..+++...+..
T Consensus 80 ~~~v~~ir~~~~~Pii~m~y~n~v~~~g~~~f~~~~~~aG~dGviv~Dl~~ee~~~~~~~ 139 (271)
T 1ujp_A 80 LELVREVRALTEKPLFLMTYLNPVLAWGPERFFGLFKQAGATGVILPDLPPDEDPGLVRL 139 (271)
T ss_dssp HHHHHHHHHHCCSCEEEECCHHHHHHHCHHHHHHHHHHHTCCEEECTTCCGGGCHHHHHH
T ss_pred HHHHHHHHhcCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEecCCCHHHHHHHHHH
Confidence 566777876678999998521 224556678899999999876666665544433
No 342
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=20.81 E-value=3.4e+02 Score=25.35 Aligned_cols=69 Identities=13% Similarity=0.188 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhCCCeEEEECC---HH---HHHHHHHhcCCCceEEEEecCCCC-C-CHHHHHHHHhccCCCCEEEEEcC
Q 007940 28 AWLKILEKMLKKCSYEVTTCGL---AR---DALSLLRERKDGYDIVISDVNMPD-M-DGFKLLEHVGLEMDLPVIMMSVD 99 (584)
Q Consensus 28 ~~r~~L~~lL~~~gy~V~~a~~---~~---eAL~~L~~~~~~pDLVIlDi~MPd-m-dGlELL~~Ir~~~~iPVIvlSa~ 99 (584)
.+.+.+++.+++.||.+..+.. .. +.++.+... .+|.||+--.-.. . ...++++.+. ...+|||++...
T Consensus 32 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~--~vdgiIi~~~~~~~~~~~~~~~~~~~-~~~iPvV~~~~~ 108 (298)
T 3tb6_A 32 SIIRGIESYLSEQGYSMLLTSTNNNPDNERRGLENLLSQ--HIDGLIVEPTKSALQTPNIGYYLNLE-KNGIPFAMINAS 108 (298)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHT--CCSEEEECCSSTTSCCTTHHHHHHHH-HTTCCEEEESSC
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHC--CCCEEEEecccccccCCcHHHHHHHH-hcCCCEEEEecC
Confidence 4567778888899998876543 22 344444443 3888887433221 1 2345566654 357999988543
No 343
>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A*
Probab=20.78 E-value=3.9e+02 Score=27.47 Aligned_cols=90 Identities=17% Similarity=0.173 Sum_probs=58.8
Q ss_pred HHHHHHHHHHhCCCeEE--EECCHHHHHHHHHhcCCCceEEEEecC----CC-CCCHHHHHHHHhcc--CCCCEEEEEcC
Q 007940 29 WLKILEKMLKKCSYEVT--TCGLARDALSLLRERKDGYDIVISDVN----MP-DMDGFKLLEHVGLE--MDLPVIMMSVD 99 (584)
Q Consensus 29 ~r~~L~~lL~~~gy~V~--~a~~~~eAL~~L~~~~~~pDLVIlDi~----MP-dmdGlELL~~Ir~~--~~iPVIvlSa~ 99 (584)
..+.++.+-+..+..|+ .+.+.++|..+... +.|.|.+.-+ +. +..-++++..++.. ..+|||.-..-
T Consensus 217 ~~~~i~~lr~~~~~PvivK~v~~~e~a~~a~~~---Gad~I~vs~~ggr~~~~g~~~~~~l~~v~~~v~~~ipVia~GGI 293 (368)
T 2nli_A 217 SPRDIEEIAGHSGLPVFVKGIQHPEDADMAIKR---GASGIWVSNHGARQLYEAPGSFDTLPAIAERVNKRVPIVFDSGV 293 (368)
T ss_dssp CHHHHHHHHHHSSSCEEEEEECSHHHHHHHHHT---TCSEEEECCGGGTSCSSCCCHHHHHHHHHHHHTTSSCEEECSSC
T ss_pred hHHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHc---CCCEEEEcCCCcCCCCCCCChHHHHHHHHHHhCCCCeEEEECCC
Confidence 34456665555553333 45677777666543 3788887432 11 23456777777533 26999988888
Q ss_pred CChHHHHhhhhcCCceEEe-CCC
Q 007940 100 GETSRVMKGVQHGACDYLL-KPI 121 (584)
Q Consensus 100 ~d~~~~~~aL~~GAdDYL~-KP~ 121 (584)
.....+.+++.+||+...+ .|+
T Consensus 294 ~~g~D~~kalalGAd~V~iGr~~ 316 (368)
T 2nli_A 294 RRGEHVAKALASGADVVALGRPV 316 (368)
T ss_dssp CSHHHHHHHHHTTCSEEEECHHH
T ss_pred CCHHHHHHHHHcCCCEEEECHHH
Confidence 8889999999999998754 444
No 344
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}
Probab=20.73 E-value=1.2e+02 Score=27.47 Aligned_cols=56 Identities=5% Similarity=-0.075 Sum_probs=38.8
Q ss_pred CEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEecCCCC
Q 007940 18 LRVLVVDDDLAWLKILEKMLKKCSYEVTTCGLARDALSLLRERKDGYDIVISDVNMPD 75 (584)
Q Consensus 18 mrVLIVDDd~~~r~~L~~lL~~~gy~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPd 75 (584)
|||||.--.-.+-..+.+.|.+.|++|..+....+.+..+.. ....++..|+.-+.
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~--~~~~~~~~D~~d~~ 56 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRLG--ATVATLVKEPLVLT 56 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHTC--TTSEEEECCGGGCC
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecccccccccC--CCceEEeccccccc
Confidence 688999888888888888887789988866544444444432 23677777776554
No 345
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=20.59 E-value=3e+02 Score=22.73 Aligned_cols=67 Identities=21% Similarity=0.173 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhCCC-----e-EEEECCHHHHHHHHHhcCCCceEEEEecCCCCCCH---HHHHHHHhccCCCCEEEE
Q 007940 29 WLKILEKMLKKCSY-----E-VTTCGLARDALSLLRERKDGYDIVISDVNMPDMDG---FKLLEHVGLEMDLPVIMM 96 (584)
Q Consensus 29 ~r~~L~~lL~~~gy-----~-V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MPdmdG---lELL~~Ir~~~~iPVIvl 96 (584)
..+.++.+++..+. + ....++..+++....+. ..+|+|++--+-.+..+ -.+.+++-...++||+++
T Consensus 67 ~~~~l~~~~~~~~~~~~~v~~~~~~g~~~~~I~~~a~~-~~~dliV~G~~~~~~~~~~~Gs~~~~v~~~~~~pVlvv 142 (143)
T 3fdx_A 67 SETQLKEIAKKFSIPEDRMHFHVAEGSPKDKILALAKS-LPADLVIIASHRPDITTYLLGSNAAAVVRHAECSVLVV 142 (143)
T ss_dssp HHHHHHHHHTTSCCCGGGEEEEEEESCHHHHHHHHHHH-TTCSEEEEESSCTTCCSCSSCHHHHHHHHHCSSEEEEE
T ss_pred HHHHHHHHHHHcCCCCCceEEEEEecChHHHHHHHHHH-hCCCEEEEeCCCCCCeeeeeccHHHHHHHhCCCCEEEe
Confidence 34456666666653 2 23455666655544432 24899999987322221 134455544567999875
No 346
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=20.46 E-value=5.3e+02 Score=25.55 Aligned_cols=61 Identities=15% Similarity=0.123 Sum_probs=43.1
Q ss_pred HHHHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCCEEEEEcCCChHHHHhhhhcCCceEEeC
Q 007940 50 ARDALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLK 119 (584)
Q Consensus 50 ~~eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL~K 119 (584)
..+.++.+.+. .+|+|.+....| .++++.++.. .++|+... ...+.+..+.+.|++.+++-
T Consensus 85 ~~~~~~~~~~~--g~d~V~~~~g~p----~~~~~~l~~~-gi~vi~~v--~t~~~a~~~~~~GaD~i~v~ 145 (328)
T 2gjl_A 85 YAEYRAAIIEA--GIRVVETAGNDP----GEHIAEFRRH-GVKVIHKC--TAVRHALKAERLGVDAVSID 145 (328)
T ss_dssp HHHHHHHHHHT--TCCEEEEEESCC----HHHHHHHHHT-TCEEEEEE--SSHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHhc--CCCEEEEcCCCc----HHHHHHHHHc-CCCEEeeC--CCHHHHHHHHHcCCCEEEEE
Confidence 34667766664 389999988766 5777777644 67777543 34566778889999988873
No 347
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=20.42 E-value=2.8e+02 Score=27.23 Aligned_cols=63 Identities=6% Similarity=0.106 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhCCCeEEEECC---HH---HHHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCCEEEEE
Q 007940 29 WLKILEKMLKKCSYEVTTCGL---AR---DALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMS 97 (584)
Q Consensus 29 ~r~~L~~lL~~~gy~V~~a~~---~~---eAL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVIvlS 97 (584)
+...+++.+++.||.+..+.. .. +.++.+... .+|-||+--. ..+ -+.++.+. ...+|+|++.
T Consensus 88 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~--~vdGiI~~~~--~~~-~~~~~~l~-~~~iPvV~i~ 156 (355)
T 3e3m_A 88 TAQSLTDVLEQGGLQLLLGYTAYSPEREEQLVETMLRR--RPEAMVLSYD--GHT-EQTIRLLQ-RASIPIVEIW 156 (355)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHT--CCSEEEEECS--CCC-HHHHHHHH-HCCSCEEEES
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhC--CCCEEEEeCC--CCC-HHHHHHHH-hCCCCEEEEC
Confidence 556677788889999876543 22 344444443 3788777322 122 24455553 3578999873
No 348
>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1
Probab=20.37 E-value=2.3e+02 Score=30.18 Aligned_cols=43 Identities=16% Similarity=0.122 Sum_probs=30.3
Q ss_pred HHHHHHHhccCCCCEEEEEcCCChHHHHhhhhcCCceEE-eCCC
Q 007940 79 FKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYL-LKPI 121 (584)
Q Consensus 79 lELL~~Ir~~~~iPVIvlSa~~d~~~~~~aL~~GAdDYL-~KP~ 121 (584)
+..+..+.....+|||.=.+-.....+.+|+.+||+... -.||
T Consensus 317 l~~~~~~~~~~~vpVia~GGi~~~~di~kalalGA~~v~~g~~~ 360 (486)
T 2cu0_A 317 VAMVADRAQEYGLYVIADGGIRYSGDIVKAIAAGADAVMLGNLL 360 (486)
T ss_dssp HHHHHHHHHHHTCEEEEESCCCSHHHHHHHHHTTCSEEEESTTT
T ss_pred HHHHHHHHHHcCCcEEecCCCCCHHHHHHHHHcCCCceeeChhh
Confidence 444444443347899876677788889999999999864 4454
No 349
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=20.27 E-value=1.9e+02 Score=27.36 Aligned_cols=64 Identities=17% Similarity=0.118 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhCCCeEEEECCH------HH---HHHHHHhcCCCceEEEEecCCCCCCHHHHHHHHhccCCCCEEEEEc
Q 007940 29 WLKILEKMLKKCSYEVTTCGLA------RD---ALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSV 98 (584)
Q Consensus 29 ~r~~L~~lL~~~gy~V~~a~~~------~e---AL~~L~~~~~~pDLVIlDi~MPdmdGlELL~~Ir~~~~iPVIvlSa 98 (584)
+...+++.+++.||.+..+... .+ .++.+.... +|.||+--..+ + -+.++.+.. ..+|||++..
T Consensus 26 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--vdgiIi~~~~~--~-~~~~~~l~~-~~iPvV~~~~ 98 (290)
T 2rgy_A 26 ILKQTDLELRAVHRHVVVATGCGESTPREQALEAVRFLIGRD--CDGVVVISHDL--H-DEDLDELHR-MHPKMVFLNR 98 (290)
T ss_dssp HHHHHHHHHHHTTCEEEEECCCSSSCHHHHHHHHHHHHHHTT--CSEEEECCSSS--C-HHHHHHHHH-HCSSEEEESS
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCchhhhhhHHHHHHHHHhcC--ccEEEEecCCC--C-HHHHHHHhh-cCCCEEEEcc
Confidence 4556677788899988765431 23 555555433 88888743222 2 245555532 4789998753
No 350
>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9
Probab=20.05 E-value=3.9e+02 Score=26.95 Aligned_cols=77 Identities=16% Similarity=0.242 Sum_probs=47.3
Q ss_pred HhCC-CeEEEECCHHHHHHHHHhcCCCceEEEEecCCC--CCCH----------HHHHHHH----hc-cCCCCEEEEEcC
Q 007940 38 KKCS-YEVTTCGLARDALSLLRERKDGYDIVISDVNMP--DMDG----------FKLLEHV----GL-EMDLPVIMMSVD 99 (584)
Q Consensus 38 ~~~g-y~V~~a~~~~eAL~~L~~~~~~pDLVIlDi~MP--dmdG----------lELL~~I----r~-~~~iPVIvlSa~ 99 (584)
++.| +.+.++.+.++|.++.+- .||+|++..-+- +.-| .+.++.+ +. .+++ ++++.-
T Consensus 160 ~~~gL~Ti~~v~~~eeA~amA~a---gpDiI~~h~glT~gglIG~~~avs~~~~~e~i~~i~~a~~~vnpdv--ivLc~g 234 (286)
T 2p10_A 160 HKLDLLTTPYVFSPEDAVAMAKA---GADILVCHMGLTTGGAIGARSGKSMDDCVSLINECIEAARTIRDDI--IILSHG 234 (286)
T ss_dssp HHTTCEECCEECSHHHHHHHHHH---TCSEEEEECSCC---------CCCHHHHHHHHHHHHHHHHHHCSCC--EEEEES
T ss_pred HHCCCeEEEecCCHHHHHHHHHc---CCCEEEECCCCCCCCcccCCCcccHHHhHHHHHHHHHHHHHhCCCc--EEEecC
Confidence 3455 455688899999887754 289888855421 3222 3344433 11 2444 444332
Q ss_pred ---CChHHHHhhhhc--CCceEEeC
Q 007940 100 ---GETSRVMKGVQH--GACDYLLK 119 (584)
Q Consensus 100 ---~d~~~~~~aL~~--GAdDYL~K 119 (584)
...+.+..+++. |+++|+.-
T Consensus 235 GpIstpeDv~~~l~~t~G~~G~~gA 259 (286)
T 2p10_A 235 GPIANPEDARFILDSCQGCHGFYGA 259 (286)
T ss_dssp TTCCSHHHHHHHHHHCTTCCEEEES
T ss_pred CCCCCHHHHHHHHhcCCCccEEEee
Confidence 678889999999 99999975
Done!