BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007943
(584 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GI8|C Chain C, Crystal Structure Of Apct K158a Transporter Bound To 7f11
Monoclonal Fab Fragment
Length = 444
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 81/326 (24%), Positives = 147/326 (45%), Gaps = 22/326 (6%)
Query: 68 EMK-KNLNWWDLIWFGIGAVMGAGIFVLTGEAARNFAGPAVIISYLISGISALLSVLCYT 126
E+K K L+ W+ + +G ++GA IF + G A+ AG + ++++SGI ALL YT
Sbjct: 2 ELKNKKLSLWEAVSMAVGVMIGASIFSIFGVGAK-IAGRNLPETFILSGIYALLVAYSYT 60
Query: 127 EFSVELPVAGGSFAYLRVELGDFVAYIAAGNIL-FEYVVSGASVARSWTSYFATLCNHDP 185
+ ++ G A++ +GD + A +L YV+S A A+ + YF L N
Sbjct: 61 KLGAKIVSNAGPIAFIHKAIGDNIITGALSILLWMSYVISIALFAKGFAGYFLPLINAPI 120
Query: 186 GSFRIHVSSVAEDYSHLDPIAVIVSFFVCVGACLSMK-GSSRFNSVAXXXXXXXXXXXXX 244
+F I ++ + IV+FF + S G + F V
Sbjct: 121 NTFNIAITEIG-----------IVAFFTALNFFGSKAVGRAEFFIVLVALLILGLFIFAG 169
Query: 245 XXXXQANTANYAI--FAPNGVRGILKASAVLFFAYVGFDGVATLGEEVKNPGRDIPIGLI 302
+Y I AP+ V G++ ASA+ F +Y+GF + E ++NP +++P +
Sbjct: 170 LITIH---PSYVIPDLAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPRAIF 226
Query: 303 GSMVITITVYCVLSATLCLMQPYSQIDVDAPFTLAFQAVGM--NWAKYIVALGALKGMTT 360
S++I + VY ++ + P ++ + LA A N ++++GAL +++
Sbjct: 227 ISILIVMFVYVGVAISAIGNLPIDELIKASENALAVAAKPFLGNLGFLLISIGALFSISS 286
Query: 361 VLLANVIGQARYFTHIGRTHMAPPFL 386
+ A + G A + + P F
Sbjct: 287 AMNATIYGGANVAYSLAKDGELPEFF 312
>pdb|3GI9|C Chain C, Crystal Structure Of Apct Transporter Bound To 7f11
Monoclonal Fab Fragment
pdb|3GIA|A Chain A, Crystal Structure Of Apct Transporter
Length = 444
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 81/326 (24%), Positives = 147/326 (45%), Gaps = 22/326 (6%)
Query: 68 EMK-KNLNWWDLIWFGIGAVMGAGIFVLTGEAARNFAGPAVIISYLISGISALLSVLCYT 126
E+K K L+ W+ + +G ++GA IF + G A+ AG + ++++SGI ALL YT
Sbjct: 2 ELKNKKLSLWEAVSMAVGVMIGASIFSIFGVGAK-IAGRNLPETFILSGIYALLVAYSYT 60
Query: 127 EFSVELPVAGGSFAYLRVELGDFVAYIAAGNIL-FEYVVSGASVARSWTSYFATLCNHDP 185
+ ++ G A++ +GD + A +L YV+S A A+ + YF L N
Sbjct: 61 KLGAKIVSNAGPIAFIHKAIGDNIITGALSILLWMSYVISIALFAKGFAGYFLPLINAPI 120
Query: 186 GSFRIHVSSVAEDYSHLDPIAVIVSFFVCVGACLSMK-GSSRFNSVAXXXXXXXXXXXXX 244
+F I ++ + IV+FF + S G + F V
Sbjct: 121 NTFNIAITEIG-----------IVAFFTALNFFGSKAVGRAEFFIVLVKLLILGLFIFAG 169
Query: 245 XXXXQANTANYAI--FAPNGVRGILKASAVLFFAYVGFDGVATLGEEVKNPGRDIPIGLI 302
+Y I AP+ V G++ ASA+ F +Y+GF + E ++NP +++P +
Sbjct: 170 LITIH---PSYVIPDLAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPRAIF 226
Query: 303 GSMVITITVYCVLSATLCLMQPYSQIDVDAPFTLAFQAVGM--NWAKYIVALGALKGMTT 360
S++I + VY ++ + P ++ + LA A N ++++GAL +++
Sbjct: 227 ISILIVMFVYVGVAISAIGNLPIDELIKASENALAVAAKPFLGNLGFLLISIGALFSISS 286
Query: 361 VLLANVIGQARYFTHIGRTHMAPPFL 386
+ A + G A + + P F
Sbjct: 287 AMNATIYGGANVAYSLAKDGELPEFF 312
>pdb|3NCY|A Chain A, X-Ray Crystal Structure Of An Arginine Agmatine Antiporter
(Adic) In Complex With A Fab Fragment
pdb|3NCY|B Chain B, X-Ray Crystal Structure Of An Arginine Agmatine Antiporter
(Adic) In Complex With A Fab Fragment
pdb|3NCY|C Chain C, X-Ray Crystal Structure Of An Arginine Agmatine Antiporter
(Adic) In Complex With A Fab Fragment
pdb|3NCY|D Chain D, X-Ray Crystal Structure Of An Arginine Agmatine Antiporter
(Adic) In Complex With A Fab Fragment
Length = 445
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 82/342 (23%), Positives = 139/342 (40%), Gaps = 36/342 (10%)
Query: 84 GAVMGAGIFVLTGEAARNFAGPAVIISYLISGISALLSVLCYTEFSVELPVAGGSFAYLR 143
G +MG+G+F+L A G I +L++ I AL + Y + S P GGS+AY R
Sbjct: 21 GNIMGSGVFLLPANLAAT--GGIAIYGWLVTIIGALALSMVYAKMSSLDPSPGGSYAYAR 78
Query: 144 VELGDFVAYIAAGNILFEYV-----VSGASVARSWTSYFATLCNHDPGSFRIHVSSVAED 198
G F+ Y N+L+ ++ + + SYF + DP + +V
Sbjct: 79 RCFGPFLGY--QTNVLYWLACWIGNIAMVVIGVGYLSYFFPILK-DPLVLTLTCVAVLWI 135
Query: 199 YSHLDPIAVIVSFFVCVGACLSMKGSSRFNSVAXXXXXXXXXXXXXXXXXQANTANYAIF 258
+ L+ VG + + + +A + A + +
Sbjct: 136 FVLLN----------IVGPKMITRVQAVATVLALVPIVGIAVFGWFWFKGETYMAAWNVS 185
Query: 259 APNGVRGILKASAVLFFAYVGFDGVATLGEEVKNPGRDIPIGLIGSMVITITVYCVLSAT 318
N I V ++++G + + VKNP R++PI IG ++I Y + +
Sbjct: 186 GMNTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSTTA 245
Query: 319 LCLMQPYSQIDVDA-PFTLAFQAVGMNWAKYIVA-------LGALKGMTTVLLANVIGQA 370
+ M P + + V A PF A + + A IV+ LG+L G T LLA +A
Sbjct: 246 IMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWT--LLAGQTAKA 303
Query: 371 RYFTHIGRTHMAPPFLAAINGKTGTPVNATVVMSLANSVVAF 412
+ PP A +N K GTPV +++ + ++ F
Sbjct: 304 A-----ADDGLFPPIFARVN-KAGTPVAGLLIVGVLMTIFQF 339
>pdb|3L1L|A Chain A, Structure Of Arg-Bound Escherichia Coli Adic
Length = 445
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 82/339 (24%), Positives = 137/339 (40%), Gaps = 36/339 (10%)
Query: 84 GAVMGAGIFVLTGEAARNFAGPAVIISYLISGISALLSVLCYTEFSVELPVAGGSFAYLR 143
GA+MG+G+F+L A G I +L++ I AL + Y + S P GGS+AY R
Sbjct: 21 GAIMGSGVFLLPANLAST--GGIAIYGWLVTIIGALGLSMVYAKMSFLDPSPGGSYAYAR 78
Query: 144 VELGDFVAYIAAGNILFEYV-----VSGASVARSWTSYFATLCNHDPGSFRIHVSSVAED 198
G F+ Y N+L+ ++ + + SYF + DP I V
Sbjct: 79 RCFGPFLGY--QTNVLYWLACWIGNIAMVVIGVGYLSYFFPILK-DPWVLTITCVVVLWI 135
Query: 199 YSHLDPIAVIVSFFVCVGACLSMKGSSRFNSVAXXXXXXXXXXXXXXXXXQANTANYAIF 258
+ L+ VG + + + +A + A + +
Sbjct: 136 FVLLN----------IVGPKMITRVQAVATVLALIPIVGIAVFGWFWFRGETYMAAWNVS 185
Query: 259 APNGVRGILKASAVLFFAYVGFDGVATLGEEVKNPGRDIPIGLIGSMVITITVYCVLSAT 318
I V ++++G + + VKNP R++PI IG ++I Y + +
Sbjct: 186 GLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSTTA 245
Query: 319 LCLMQPYSQIDVDA-PFTLAFQAVGMNWAKYIVA-------LGALKGMTTVLLANVIGQA 370
+ M P + + V A PF A + + A IV+ LG+L G T LLA +A
Sbjct: 246 IMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWT--LLAGQTAKA 303
Query: 371 RYFTHIGRTHMAPPFLAAINGKTGTPVNATVVMSLANSV 409
+ PP A +N K GTPV +++ + ++
Sbjct: 304 A-----ADDGLFPPIFARVN-KAGTPVAGLIIVGILMTI 336
>pdb|3LRB|A Chain A, Structure Of E. Coli Adic
pdb|3LRB|B Chain B, Structure Of E. Coli Adic
pdb|3LRC|A Chain A, Structure Of E. Coli Adic (P1)
pdb|3LRC|B Chain B, Structure Of E. Coli Adic (P1)
pdb|3LRC|C Chain C, Structure Of E. Coli Adic (P1)
pdb|3LRC|D Chain D, Structure Of E. Coli Adic (P1)
Length = 445
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 81/339 (23%), Positives = 136/339 (40%), Gaps = 36/339 (10%)
Query: 84 GAVMGAGIFVLTGEAARNFAGPAVIISYLISGISALLSVLCYTEFSVELPVAGGSFAYLR 143
G +MG+G+F+L A G I +L++ I AL + Y + S P GGS+AY R
Sbjct: 21 GNIMGSGVFLLPANLAST--GGIAIYGWLVTIIGALGLSMVYAKMSFLDPSPGGSYAYAR 78
Query: 144 VELGDFVAYIAAGNILFEYV-----VSGASVARSWTSYFATLCNHDPGSFRIHVSSVAED 198
G F+ Y N+L+ ++ + + SYF + DP I V
Sbjct: 79 RCFGPFLGY--QTNVLYWLACWIGNIAMVVIGVGYLSYFFPILK-DPLVLTITCVVVLWI 135
Query: 199 YSHLDPIAVIVSFFVCVGACLSMKGSSRFNSVAXXXXXXXXXXXXXXXXXQANTANYAIF 258
+ L+ VG + + + +A + A + +
Sbjct: 136 FVLLN----------IVGPKMITRVQAVATVLALIPIVGIAVFGWFWFRGETYMAAWNVS 185
Query: 259 APNGVRGILKASAVLFFAYVGFDGVATLGEEVKNPGRDIPIGLIGSMVITITVYCVLSAT 318
I V ++++G + + VKNP R++PI IG ++I Y + +
Sbjct: 186 GLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSTTA 245
Query: 319 LCLMQPYSQIDVDA-PFTLAFQAVGMNWAKYIVA-------LGALKGMTTVLLANVIGQA 370
+ M P + + V A PF A + + A IV+ LG+L G T LLA +A
Sbjct: 246 IMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWT--LLAGQTAKA 303
Query: 371 RYFTHIGRTHMAPPFLAAINGKTGTPVNATVVMSLANSV 409
+ PP A +N K GTPV +++ + ++
Sbjct: 304 A-----ADDGLFPPIFARVN-KAGTPVAGLIIVGILMTI 336
>pdb|3OB6|A Chain A, Structure Of Adic(N101a) In The Open-To-Out Arg+ Bound
Conformation
pdb|3OB6|B Chain B, Structure Of Adic(N101a) In The Open-To-Out Arg+ Bound
Conformation
Length = 445
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 81/339 (23%), Positives = 136/339 (40%), Gaps = 36/339 (10%)
Query: 84 GAVMGAGIFVLTGEAARNFAGPAVIISYLISGISALLSVLCYTEFSVELPVAGGSFAYLR 143
G +MG+G+F+L A G I +L++ I AL + Y + S P GGS+AY R
Sbjct: 21 GNIMGSGVFLLPANLAST--GGIAIYGWLVTIIGALGLSMVYAKMSFLDPSPGGSYAYAR 78
Query: 144 VELGDFVAYIAAGNILFEYV-----VSGASVARSWTSYFATLCNHDPGSFRIHVSSVAED 198
G F+ Y N+L+ ++ + + SYF + DP I V
Sbjct: 79 RCFGPFLGY--QTNVLYWLACWIGAIAMVVIGVGYLSYFFPILK-DPLVLTITCVVVLWI 135
Query: 199 YSHLDPIAVIVSFFVCVGACLSMKGSSRFNSVAXXXXXXXXXXXXXXXXXQANTANYAIF 258
+ L+ VG + + + +A + A + +
Sbjct: 136 FVLLN----------IVGPKMITRVQAVATVLALIPIVGIAVFGWFWFRGETYMAAWNVS 185
Query: 259 APNGVRGILKASAVLFFAYVGFDGVATLGEEVKNPGRDIPIGLIGSMVITITVYCVLSAT 318
I V ++++G + + VKNP R++PI IG ++I Y + +
Sbjct: 186 GLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSTTA 245
Query: 319 LCLMQPYSQIDVDA-PFTLAFQAVGMNWAKYIVA-------LGALKGMTTVLLANVIGQA 370
+ M P + + V A PF A + + A IV+ LG+L G T LLA +A
Sbjct: 246 IMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWT--LLAGQTAKA 303
Query: 371 RYFTHIGRTHMAPPFLAAINGKTGTPVNATVVMSLANSV 409
+ PP A +N K GTPV +++ + ++
Sbjct: 304 A-----ADDGLFPPIFARVN-KAGTPVAGLIIVGILMTI 336
>pdb|4DJI|A Chain A, Structure Of Glutamate-Gaba Antiporter Gadc
pdb|4DJI|B Chain B, Structure Of Glutamate-Gaba Antiporter Gadc
pdb|4DJK|A Chain A, Structure Of Glutamate-Gaba Antiporter Gadc
pdb|4DJK|B Chain B, Structure Of Glutamate-Gaba Antiporter Gadc
Length = 511
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 70/151 (46%), Gaps = 7/151 (4%)
Query: 265 GILKASAVLFFAYVGFDGVATLGEEVKNPGRDIPIGLIGSMVITITVYCVLSATLCLMQP 324
G L +Y+G + AT E+ NPGRD P+ ++ MV I + V ++ ++ P
Sbjct: 202 GTLVVFVAFILSYMGVEASATHVNEMSNPGRDYPLAMLLLMVAAICLSSVGGLSIAMVIP 261
Query: 325 YSQIDVDA----PFTLAFQAVG--MNWAKYIVALGALKGMTTVLLANVIGQARYFTHIGR 378
++I++ A FT+ V + W +++ L G+ + + ++G +R +
Sbjct: 262 GNEINLSAGVMQTFTVLMSHVAPEIEWTVRVISALLLLGVLAEIASWIVGPSRGMYVTAQ 321
Query: 379 THMAPPFLAAINGKTGTPVNATVVMSLANSV 409
++ P A +N K G PV + + S+
Sbjct: 322 KNLLPAAFAKMN-KNGVPVTLVISQLVITSI 351
>pdb|2BP7|A Chain A, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
pdb|2BP7|C Chain C, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
pdb|2BP7|E Chain E, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
pdb|2BP7|G Chain G, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
Length = 410
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 38/87 (43%), Gaps = 11/87 (12%)
Query: 136 GGSFAYLRVELGDFVAYIAAGNILFEYVVSGASVAR-SWTSYFA--TLCNHDPGSFRIHV 192
G A LRV+ DFVA AA E G + W +Y A + DP +R
Sbjct: 266 GCGIASLRVDGNDFVAVYAASRWAAERARRGLGPSLIEWVTYRAGPHSTSDDPSKYR--- 322
Query: 193 SSVAEDYSHL---DPIAVIVSFFVCVG 216
A+D+SH DPIA + + +G
Sbjct: 323 --PADDWSHFPLGDPIARLKQHLIKIG 347
>pdb|1QS0|A Chain A, Crystal Structure Of Pseudomonas Putida 2-Oxoisovalerate
Dehydrogenase (Branched-Chain Alpha-Keto Acid
Dehydrogenase, E1b)
Length = 407
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 38/87 (43%), Gaps = 11/87 (12%)
Query: 136 GGSFAYLRVELGDFVAYIAAGNILFEYVVSGASVAR-SWTSYFA--TLCNHDPGSFRIHV 192
G A LRV+ DFVA AA E G + W +Y A + DP +R
Sbjct: 265 GCGIASLRVDGNDFVAVYAASRWAAERARRGLGPSLIEWVTYRAGPHSTSDDPSKYR--- 321
Query: 193 SSVAEDYSHL---DPIAVIVSFFVCVG 216
A+D+SH DPIA + + +G
Sbjct: 322 --PADDWSHFPLGDPIARLKQHLIKIG 346
>pdb|2X0B|B Chain B, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|D Chain D, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|F Chain F, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|H Chain H, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
Length = 452
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 316 SATLCLMQPYSQIDVDAPFTLAFQAVGMNWAKYI 349
SA L L+QP+ D+D L FQ +NW K +
Sbjct: 306 SACLLLIQPHYASDLDKVEGLTFQQNSLNWMKKL 339
>pdb|2WXW|A Chain A, Crystal Structure Of Human Angiotensinogen
Length = 453
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 316 SATLCLMQPYSQIDVDAPFTLAFQAVGMNWAKYI 349
SA L L+QP+ D+D L FQ +NW K +
Sbjct: 307 SACLLLIQPHYASDLDKVEGLTFQQNSLNWMKKL 340
>pdb|2CJA|A Chain A, Crystal Structure Of Methanosarcina Barkeri Seryl-Trna
Synthetase Complexed With Atp
pdb|2CJA|B Chain B, Crystal Structure Of Methanosarcina Barkeri Seryl-Trna
Synthetase Complexed With Atp
Length = 522
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 8/43 (18%)
Query: 38 ASTRARLKDRLLTRSNDNLELHQMRARSEHEMKKNLNWWDLIW 80
A + R+ DR+LT + +E Q A++EH W+L+W
Sbjct: 158 AEXKNRVPDRILTLLEEKIEAAQYGAKAEH--------WNLLW 192
>pdb|2CIM|A Chain A, Crystal Structure Of Methanosarcina Barkeri Seryl-trna
Synthetase
pdb|2CIM|B Chain B, Crystal Structure Of Methanosarcina Barkeri Seryl-trna
Synthetase
pdb|2CJ9|A Chain A, Crystal Structure Of Methanosarcina Barkeri Seryl-Trna
Synthetase Complexed With An Analog Of Seryladenylate
pdb|2CJ9|B Chain B, Crystal Structure Of Methanosarcina Barkeri Seryl-Trna
Synthetase Complexed With An Analog Of Seryladenylate
pdb|2CJB|A Chain A, Crystal Structure Of Methanosarcina Barkeri Seryl-Trna
Synthetase Complexed With Serine
pdb|2CJB|B Chain B, Crystal Structure Of Methanosarcina Barkeri Seryl-Trna
Synthetase Complexed With Serine
Length = 522
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 8/43 (18%)
Query: 38 ASTRARLKDRLLTRSNDNLELHQMRARSEHEMKKNLNWWDLIW 80
A + R+ DR+LT + +E Q A++EH W+L+W
Sbjct: 158 AEMKNRVPDRILTLLEEKIEAAQYGAKAEH--------WNLLW 192
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.136 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,606,588
Number of Sequences: 62578
Number of extensions: 529676
Number of successful extensions: 1167
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1139
Number of HSP's gapped (non-prelim): 24
length of query: 584
length of database: 14,973,337
effective HSP length: 104
effective length of query: 480
effective length of database: 8,465,225
effective search space: 4063308000
effective search space used: 4063308000
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 54 (25.4 bits)