Query 007943
Match_columns 584
No_of_seqs 255 out of 2964
Neff 9.5
Searched_HMMs 46136
Date Thu Mar 28 17:24:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007943.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007943hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00906 2A0303 cationic amin 100.0 3.6E-65 7.8E-70 548.1 54.6 500 65-564 22-557 (557)
2 PRK15049 L-asparagine permease 100.0 4.9E-57 1.1E-61 481.1 46.4 420 66-559 23-470 (499)
3 COG0833 LysP Amino acid transp 100.0 3.1E-56 6.6E-61 450.0 35.6 423 68-562 41-501 (541)
4 PRK11387 S-methylmethionine tr 100.0 4.2E-55 9.2E-60 465.5 45.0 423 66-561 9-459 (471)
5 PRK10746 putative transport pr 100.0 1.3E-54 2.8E-59 458.9 46.6 427 65-567 4-458 (461)
6 PRK10249 phenylalanine transpo 100.0 1.4E-54 3E-59 459.1 45.3 415 65-556 15-454 (458)
7 COG1113 AnsP Gamma-aminobutyra 100.0 3.7E-55 8.1E-60 433.2 35.7 422 65-562 7-454 (462)
8 TIGR00908 2A0305 ethanolamine 100.0 2E-53 4.4E-58 450.2 45.5 421 65-564 1-436 (442)
9 TIGR00909 2A0306 amino acid tr 100.0 8.1E-53 1.8E-57 444.6 46.4 425 69-557 1-429 (429)
10 PRK10238 aromatic amino acid t 100.0 8.1E-53 1.8E-57 445.4 45.5 365 65-447 6-389 (456)
11 PRK10580 proY putative proline 100.0 1.3E-52 2.8E-57 445.0 47.2 422 65-561 3-450 (457)
12 PRK10836 lysine transporter; P 100.0 7.3E-53 1.6E-57 450.1 45.4 399 65-537 9-437 (489)
13 PRK11357 frlA putative fructos 100.0 6E-53 1.3E-57 446.7 42.7 423 65-562 2-439 (445)
14 TIGR01773 GABAperm gamma-amino 100.0 2.5E-52 5.5E-57 442.8 46.4 364 66-447 7-391 (452)
15 PRK10655 potE putrescine trans 100.0 1.6E-52 3.5E-57 442.8 44.2 419 69-564 4-434 (438)
16 PRK10644 arginine:agmatin anti 100.0 3.2E-52 6.9E-57 440.9 44.5 420 66-564 3-435 (445)
17 PRK11049 D-alanine/D-serine/gl 100.0 5E-52 1.1E-56 441.3 45.6 364 66-447 15-402 (469)
18 KOG1289 Amino acid transporter 100.0 1.1E-52 2.4E-57 422.9 32.2 458 49-564 28-516 (550)
19 TIGR00913 2A0310 amino acid pe 100.0 1.1E-50 2.4E-55 433.6 46.2 419 70-561 1-464 (478)
20 PRK10435 cadB lysine/cadaverin 100.0 1.1E-50 2.3E-55 427.4 44.1 411 69-564 3-430 (435)
21 KOG1286 Amino acid transporter 100.0 1.1E-52 2.3E-57 441.1 26.8 487 67-563 26-553 (554)
22 PRK10197 gamma-aminobutyrate t 100.0 1.7E-50 3.7E-55 426.4 42.9 405 81-561 2-432 (446)
23 TIGR00905 2A0302 transporter, 100.0 5.8E-50 1.3E-54 426.3 45.2 419 69-562 5-440 (473)
24 TIGR00911 2A0308 L-type amino 100.0 2.3E-50 4.9E-55 432.9 40.7 400 65-478 36-449 (501)
25 TIGR03428 ureacarb_perm permea 100.0 1.7E-49 3.7E-54 422.9 46.4 420 59-509 3-449 (475)
26 PRK11021 putative transporter; 100.0 9.5E-49 2.1E-53 410.2 46.2 398 73-562 1-406 (410)
27 KOG1287 Amino acid transporter 100.0 3.1E-50 6.7E-55 405.6 31.4 425 65-505 6-442 (479)
28 TIGR00907 2A0304 amino acid pe 100.0 6E-49 1.3E-53 420.4 43.2 442 65-563 6-480 (482)
29 TIGR03810 arg_ornith_anti argi 100.0 6.2E-48 1.4E-52 410.2 45.4 414 71-560 1-433 (468)
30 TIGR00930 2a30 K-Cl cotranspor 100.0 4.3E-46 9.4E-51 416.4 42.2 371 68-445 73-487 (953)
31 TIGR03813 put_Glu_GABA_T putat 100.0 3.2E-45 7E-50 390.3 44.0 435 71-561 1-458 (474)
32 TIGR00910 2A0307_GadC glutamat 100.0 5.1E-43 1.1E-47 373.8 42.9 400 70-505 3-428 (507)
33 COG0531 PotE Amino acid transp 100.0 2.7E-42 5.9E-47 369.3 45.3 379 65-453 6-398 (466)
34 PF13520 AA_permease_2: Amino 100.0 4.4E-43 9.5E-48 370.6 37.7 362 73-450 1-381 (426)
35 PF00324 AA_permease: Amino ac 100.0 6.6E-46 1.4E-50 396.6 11.1 359 78-448 2-396 (478)
36 PRK15238 inner membrane transp 100.0 7.2E-41 1.6E-45 358.3 45.4 376 69-454 5-431 (496)
37 TIGR00837 araaP aromatic amino 100.0 1.6E-28 3.4E-33 255.1 30.7 341 80-443 4-355 (381)
38 KOG1288 Amino acid transporter 99.9 2.9E-25 6.3E-30 225.8 22.0 392 72-470 66-498 (945)
39 KOG2082 K+/Cl- cotransporter K 99.9 1.2E-24 2.6E-29 222.8 24.6 412 77-503 119-645 (1075)
40 TIGR00912 2A0309 spore germina 99.9 8.4E-23 1.8E-27 210.5 36.4 287 71-375 1-294 (359)
41 PHA02764 hypothetical protein; 99.9 2.8E-20 6.1E-25 174.3 23.2 280 64-397 5-285 (399)
42 TIGR00796 livcs branched-chain 99.9 7.1E-18 1.5E-22 170.7 37.6 338 82-455 4-365 (378)
43 KOG2083 Na+/K+ symporter [Inor 99.8 1E-19 2.3E-24 184.6 18.8 391 70-475 27-448 (643)
44 PF03222 Trp_Tyr_perm: Tryptop 99.8 6E-17 1.3E-21 166.8 37.6 331 71-425 1-345 (394)
45 TIGR00814 stp serine transport 99.8 8.3E-17 1.8E-21 165.4 31.2 286 78-379 8-313 (397)
46 PRK09664 tryptophan permease T 99.8 1.2E-15 2.7E-20 155.2 34.7 344 74-440 10-367 (415)
47 PRK10483 tryptophan permease; 99.8 1.6E-15 3.5E-20 154.5 35.4 347 69-439 7-365 (414)
48 PRK15132 tyrosine transporter 99.8 7.1E-15 1.5E-19 150.7 37.4 328 74-425 4-342 (403)
49 PF03845 Spore_permease: Spore 99.7 7.6E-15 1.7E-19 148.5 32.1 286 72-376 1-291 (320)
50 COG0814 SdaC Amino acid permea 99.7 8.5E-14 1.8E-18 144.6 34.5 285 68-364 4-302 (415)
51 PRK13629 threonine/serine tran 99.7 3.5E-13 7.5E-18 137.4 35.2 288 80-379 26-348 (443)
52 PF01235 Na_Ala_symp: Sodium:a 99.4 2.3E-10 4.9E-15 116.5 28.1 344 68-444 14-391 (416)
53 KOG1303 Amino acid transporter 99.4 5.2E-10 1.1E-14 115.5 27.0 278 68-365 33-323 (437)
54 KOG1304 Amino acid transporter 99.3 8.6E-10 1.9E-14 112.0 27.7 355 70-453 44-421 (449)
55 PLN03074 auxin influx permease 99.3 5.8E-09 1.3E-13 110.3 33.9 236 72-326 45-294 (473)
56 TIGR00835 agcS amino acid carr 99.3 1.7E-08 3.6E-13 103.6 33.0 285 71-376 45-364 (425)
57 PRK11375 allantoin permease; P 99.2 1.9E-07 4.1E-12 99.4 38.0 330 67-413 21-364 (484)
58 PTZ00206 amino acid transporte 99.2 6.6E-08 1.4E-12 102.7 34.3 246 73-326 60-319 (467)
59 COG1115 AlsT Na+/alanine sympo 99.2 1.8E-07 3.9E-12 94.3 34.3 291 68-377 58-382 (452)
60 COG3949 Uncharacterized membra 99.1 4.9E-07 1.1E-11 87.3 31.0 266 79-368 9-280 (349)
61 COG1457 CodB Purine-cytosine p 99.0 1.1E-05 2.3E-10 83.0 36.5 240 107-375 54-299 (442)
62 PF13906 AA_permease_C: C-term 98.9 1.8E-09 4E-14 74.9 5.1 51 512-562 1-51 (51)
63 PRK11017 codB cytosine permeas 98.9 7E-05 1.5E-09 78.2 38.8 216 70-307 8-226 (404)
64 PRK09442 panF sodium/panthothe 98.8 0.00013 2.9E-09 78.2 40.4 283 70-372 40-346 (483)
65 PF01490 Aa_trans: Transmembra 98.8 1.3E-09 2.9E-14 114.6 0.5 354 71-446 1-376 (409)
66 COG1953 FUI1 Cytosine/uracil/t 98.7 0.00015 3.3E-09 74.7 35.2 362 67-447 35-418 (497)
67 TIGR00800 ncs1 NCS1 nucleoside 98.7 0.00014 3E-09 77.1 34.6 241 67-315 8-258 (442)
68 TIGR02121 Na_Pro_sym sodium/pr 98.6 0.0014 3E-08 70.4 42.2 283 70-373 35-346 (487)
69 TIGR02358 thia_cytX probable h 98.6 0.0012 2.5E-08 68.6 38.2 246 106-377 30-276 (386)
70 TIGR02119 panF sodium/pantothe 98.6 0.0021 4.6E-08 68.8 40.7 284 70-372 39-345 (471)
71 TIGR00813 sss transporter, SSS 98.6 0.00023 5E-09 74.7 32.5 285 70-373 2-322 (407)
72 PF00474 SSF: Sodium:solute sy 98.4 5.7E-05 1.2E-09 79.3 23.1 291 70-382 5-326 (406)
73 PRK15419 proline:sodium sympor 98.4 0.0058 1.3E-07 65.9 41.9 283 70-372 39-352 (502)
74 PRK12488 acetate permease; Pro 98.4 0.0064 1.4E-07 66.2 40.4 157 70-245 66-224 (549)
75 PRK09395 actP acetate permease 98.4 0.0073 1.6E-07 65.9 41.2 155 70-243 68-224 (551)
76 TIGR03648 Na_symport_lg probab 98.2 0.013 2.7E-07 64.1 37.4 149 70-239 31-183 (552)
77 PRK10484 putative transporter; 98.2 0.014 3.1E-07 63.3 43.7 293 70-373 37-355 (523)
78 COG0733 Na+-dependent transpor 98.2 0.0053 1.1E-07 62.9 31.0 289 73-366 8-324 (439)
79 PF05525 Branch_AA_trans: Bran 98.2 0.01 2.2E-07 61.5 32.7 312 83-432 13-346 (427)
80 COG0591 PutP Na+/proline sympo 98.2 0.012 2.6E-07 63.1 34.6 282 70-373 37-353 (493)
81 TIGR02711 symport_actP cation/ 98.1 0.023 5E-07 62.0 39.9 280 70-370 66-379 (549)
82 PRK00701 manganese transport p 98.1 0.013 2.8E-07 61.6 33.0 76 103-182 63-140 (439)
83 PF01566 Nramp: Natural resist 98.1 0.0047 1E-07 63.6 28.9 251 104-377 12-285 (358)
84 PLN00151 potassium transporter 98.1 0.0024 5.3E-08 69.7 26.2 279 202-500 274-574 (852)
85 KOG1305 Amino acid transporter 98.0 0.0035 7.5E-08 64.9 25.7 249 70-327 3-258 (411)
86 PF02133 Transp_cyt_pur: Perme 97.9 0.00053 1.1E-08 72.8 17.9 176 69-247 5-182 (440)
87 COG1914 MntH Mn2+ and Fe2+ tra 97.9 0.042 9.1E-07 56.9 34.8 122 109-249 48-171 (416)
88 PF02028 BCCT: BCCT family tra 97.9 0.035 7.6E-07 58.8 30.9 350 69-443 71-483 (485)
89 PF02705 K_trans: K+ potassium 97.9 0.02 4.4E-07 60.5 27.9 229 202-444 132-378 (534)
90 PRK15433 branched-chain amino 97.5 0.15 3.3E-06 53.0 32.0 310 83-431 18-348 (439)
91 PLN00149 potassium transporter 97.5 0.048 1E-06 60.0 24.4 280 204-500 200-501 (779)
92 PLN00150 potassium ion transpo 97.4 0.056 1.2E-06 59.4 24.4 279 202-500 214-514 (779)
93 COG1114 BrnQ Branched-chain am 97.4 0.22 4.8E-06 50.6 33.8 314 80-431 12-347 (431)
94 TIGR00794 kup potassium uptake 97.3 0.046 1E-06 59.5 22.4 222 202-436 168-406 (688)
95 PLN00148 potassium transporter 97.2 0.055 1.2E-06 59.5 21.9 279 202-500 197-497 (785)
96 PRK10745 trkD potassium transp 97.1 0.47 1E-05 51.1 26.6 222 202-436 143-380 (622)
97 PRK09950 putative transporter; 96.8 0.94 2E-05 48.3 27.7 115 70-184 81-223 (506)
98 PF00209 SNF: Sodium:neurotran 96.7 1.2 2.6E-05 48.4 27.6 97 217-316 195-301 (523)
99 COG1292 BetT Choline-glycine b 96.6 1.3 2.7E-05 46.9 24.4 105 333-445 390-498 (537)
100 PRK09928 choline transport pro 96.6 1.6 3.4E-05 48.1 25.8 23 70-92 90-112 (679)
101 COG4147 DhlC Predicted symport 96.2 2 4.3E-05 44.6 33.0 241 107-368 79-366 (529)
102 PRK03356 L-carnitine/gamma-but 96.1 2.5 5.4E-05 45.1 28.5 24 70-93 83-106 (504)
103 KOG2466 Uridine permease/thiam 95.9 0.34 7.3E-06 50.0 15.7 308 67-388 50-381 (572)
104 TIGR00842 bcct choline/carniti 95.7 3.5 7.5E-05 43.5 28.7 114 70-184 34-176 (453)
105 TIGR00911 2A0308 L-type amino 95.4 0.36 7.8E-06 52.2 14.8 58 497-556 408-468 (501)
106 KOG4303 Vesicular inhibitory a 95.2 0.12 2.5E-06 50.8 9.0 241 67-324 111-361 (524)
107 KOG1287 Amino acid transporter 94.8 0.43 9.4E-06 49.9 12.6 68 489-558 369-440 (479)
108 COG3158 Kup K+ transporter [In 93.5 5.9 0.00013 42.1 17.5 274 202-497 148-444 (627)
109 COG4145 PanF Na+/panthothenate 91.7 16 0.00035 36.9 32.0 276 71-372 39-344 (473)
110 KOG2349 Na+:iodide/myo-inosito 91.3 3.6 7.7E-05 44.4 13.1 224 135-375 107-362 (585)
111 PF05297 Herpes_LMP1: Herpesvi 90.3 0.084 1.8E-06 49.9 0.0 37 465-501 88-125 (381)
112 COG4146 Predicted symporter [G 83.1 56 0.0012 33.1 26.5 236 137-388 104-367 (571)
113 TIGR01197 nramp NRAMP (natural 79.1 85 0.0018 32.6 36.3 43 334-376 282-324 (390)
114 PLN00411 nodulin MtN21 family 73.3 64 0.0014 33.1 12.8 50 512-562 284-333 (358)
115 PTZ00206 amino acid transporte 71.2 68 0.0015 34.3 13.0 57 331-387 120-176 (467)
116 PRK15015 carbon starvation pro 68.4 2E+02 0.0042 31.9 36.4 99 77-177 87-186 (701)
117 TIGR03813 put_Glu_GABA_T putat 67.8 1.8E+02 0.0038 31.1 17.8 37 498-534 379-419 (474)
118 PF02554 CstA: Carbon starvati 67.4 1.5E+02 0.0033 30.3 21.4 104 73-178 52-156 (376)
119 PF05961 Chordopox_A13L: Chord 62.6 13 0.00028 27.3 3.6 26 540-565 6-31 (68)
120 PF03595 SLAC1: Voltage-depend 59.8 1.7E+02 0.0036 29.5 12.9 17 512-528 137-153 (330)
121 TIGR00837 araaP aromatic amino 57.5 2.3E+02 0.005 29.1 25.1 57 392-449 308-364 (381)
122 PRK11056 hypothetical protein; 52.9 1.3E+02 0.0029 25.0 10.1 49 516-564 63-116 (120)
123 TIGR00913 2A0310 amino acid pe 52.7 1.3E+02 0.0028 32.2 11.1 29 540-568 446-474 (478)
124 COG1966 CstA Carbon starvation 51.8 3.4E+02 0.0074 29.3 31.5 102 73-175 52-153 (575)
125 PRK15433 branched-chain amino 51.0 3.3E+02 0.007 28.8 14.5 92 140-248 269-360 (439)
126 PRK03557 zinc transporter ZitB 48.8 2.9E+02 0.0063 27.6 15.9 18 440-457 69-86 (312)
127 PF02667 SCFA_trans: Short cha 47.6 3.7E+02 0.008 28.4 15.0 95 294-413 14-111 (453)
128 KOG1286 Amino acid transporter 47.5 4.2E+02 0.009 29.1 18.1 48 203-250 156-203 (554)
129 PHA03049 IMV membrane protein; 45.5 29 0.00062 25.4 3.1 26 540-565 6-31 (68)
130 KOG1289 Amino acid transporter 44.6 4.4E+02 0.0096 28.5 13.5 75 107-181 293-370 (550)
131 COG4025 Predicted membrane pro 44.1 1.2E+02 0.0026 28.5 7.6 15 369-383 56-70 (284)
132 PF05767 Pox_A14: Poxvirus vir 43.3 58 0.0013 25.6 4.6 21 542-562 53-73 (92)
133 TIGR00739 yajC preprotein tran 42.7 21 0.00045 28.0 2.3 35 547-581 10-44 (84)
134 PF06011 TRP: Transient recept 42.0 4.4E+02 0.0096 27.8 21.3 50 333-382 139-189 (438)
135 PRK05886 yajC preprotein trans 39.8 32 0.00069 28.4 3.0 26 546-571 10-35 (109)
136 PF02705 K_trans: K+ potassium 39.3 2.3E+02 0.0049 30.7 10.0 31 468-498 339-369 (534)
137 PF05656 DUF805: Protein of un 39.0 2.2E+02 0.0049 23.5 11.1 18 429-446 56-73 (120)
138 KOG2325 Predicted transporter/ 38.7 4.2E+02 0.0091 28.5 11.8 30 287-316 22-51 (488)
139 COG1272 Predicted membrane pro 37.3 3.7E+02 0.008 25.5 13.6 69 483-555 116-184 (226)
140 PF09991 DUF2232: Predicted me 37.0 4E+02 0.0087 25.9 19.1 97 346-446 157-258 (290)
141 PRK05585 yajC preprotein trans 37.0 34 0.00073 28.1 2.8 20 545-564 23-42 (106)
142 PF02699 YajC: Preprotein tran 36.6 35 0.00076 26.5 2.7 17 548-564 10-26 (82)
143 PF07760 DUF1616: Protein of u 36.5 4.3E+02 0.0093 26.1 11.5 31 485-515 90-120 (287)
144 COG4736 CcoQ Cbb3-type cytochr 35.8 44 0.00096 24.2 2.8 19 548-567 22-40 (60)
145 PF05525 Branch_AA_trans: Bran 35.2 5.6E+02 0.012 27.0 15.7 94 140-249 265-358 (427)
146 PHA02898 virion envelope prote 34.7 90 0.002 24.4 4.4 21 542-562 53-73 (92)
147 PF05545 FixQ: Cbb3-type cytoc 34.7 41 0.0009 23.1 2.5 18 544-562 18-35 (49)
148 PF03806 ABG_transport: AbgT p 34.0 3.2E+02 0.007 29.3 10.0 99 112-228 301-405 (502)
149 PF03547 Mem_trans: Membrane t 33.1 4.2E+02 0.0091 27.2 11.0 10 433-442 12-21 (385)
150 PF01578 Cytochrom_C_asm: Cyto 32.9 3.8E+02 0.0082 24.9 9.7 19 422-440 4-22 (214)
151 PRK15238 inner membrane transp 32.6 6.5E+02 0.014 27.0 14.3 24 541-564 471-494 (496)
152 TIGR00796 livcs branched-chain 32.5 5.8E+02 0.013 26.4 15.3 76 140-231 259-334 (378)
153 COG3247 HdeD Uncharacterized c 32.3 4E+02 0.0086 24.4 16.5 36 392-427 14-49 (185)
154 PF10951 DUF2776: Protein of u 31.8 1.7E+02 0.0036 28.7 6.7 20 508-527 284-303 (347)
155 PF11998 DUF3493: Protein of u 31.2 2.1E+02 0.0046 21.8 5.9 40 282-321 5-44 (75)
156 PF01102 Glycophorin_A: Glycop 30.9 55 0.0012 27.7 3.1 19 544-562 76-94 (122)
157 COG1862 YajC Preprotein transl 30.8 50 0.0011 26.6 2.7 39 544-582 13-51 (97)
158 PF02009 Rifin_STEVOR: Rifin/s 30.7 63 0.0014 32.0 4.0 31 539-569 261-291 (299)
159 PF12794 MscS_TM: Mechanosensi 29.0 6.3E+02 0.014 25.7 19.1 36 283-318 28-67 (340)
160 KOG1619 Cytochrome b [Energy p 28.5 1.1E+02 0.0023 29.1 4.8 27 507-533 152-178 (245)
161 PF11947 DUF3464: Protein of u 28.2 1.3E+02 0.0028 26.5 5.0 65 77-142 65-135 (153)
162 PF07226 DUF1422: Protein of u 27.9 3.6E+02 0.0077 22.5 10.4 47 516-562 63-114 (117)
163 COG0109 CyoE Polyprenyltransfe 27.5 6.3E+02 0.014 25.2 13.9 40 395-434 97-138 (304)
164 PF08507 COPI_assoc: COPI asso 26.8 3.6E+02 0.0079 23.1 7.7 21 536-556 85-105 (136)
165 PRK10297 PTS system N,N'-diace 26.5 7E+02 0.015 26.5 11.2 31 366-396 319-350 (452)
166 PF12666 PrgI: PrgI family pro 26.4 2.1E+02 0.0045 22.6 5.7 31 66-96 10-40 (93)
167 PF11174 DUF2970: Protein of u 25.6 1.6E+02 0.0036 21.0 4.3 44 267-313 2-45 (56)
168 PF03825 Nuc_H_symport: Nucleo 24.2 8.2E+02 0.018 25.4 11.6 18 392-409 63-80 (400)
169 PHA03048 IMV membrane protein; 24.1 2.4E+02 0.0053 22.1 5.2 21 542-562 52-72 (93)
170 COG2271 UhpC Sugar phosphate p 22.5 9.3E+02 0.02 25.4 13.0 49 357-414 67-115 (448)
171 PF12263 DUF3611: Protein of u 22.2 5.8E+02 0.013 23.3 8.3 50 266-315 66-118 (183)
172 COG4858 Uncharacterized membra 22.2 6.1E+02 0.013 23.2 9.2 110 457-567 102-220 (226)
173 PF12606 RELT: Tumour necrosis 21.4 1E+02 0.0022 21.4 2.5 13 546-558 13-25 (50)
174 KOG2736 Presenilin [Signal tra 21.3 1.6E+02 0.0034 30.0 4.7 20 103-122 370-389 (406)
175 COG1114 BrnQ Branched-chain am 21.3 9.6E+02 0.021 25.1 14.6 74 139-228 266-339 (431)
176 PRK02983 lysS lysyl-tRNA synth 20.9 1.4E+03 0.031 27.5 13.3 21 392-412 7-27 (1094)
177 KOG3659 Sodium-neurotransmitte 20.8 1.1E+03 0.025 25.8 30.8 113 205-318 257-377 (629)
178 PRK11383 hypothetical protein; 20.7 5.6E+02 0.012 22.2 9.5 102 401-502 17-123 (145)
No 1
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=100.00 E-value=3.6e-65 Score=548.13 Aligned_cols=500 Identities=39% Similarity=0.655 Sum_probs=410.9
Q ss_pred cccccccccCHHHHHHHHHHHhhhhhhHHccHHhHhhccCchHHHHHHHHHHHHHHHHHHHHhhhhccccCCchhhhHHH
Q 007943 65 SEHEMKKNLNWWDLIWFGIGAVMGAGIFVLTGEAARNFAGPAVIISYLISGISALLSVLCYTEFSVELPVAGGSFAYLRV 144 (584)
Q Consensus 65 ~~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ii~~l~~~~~~~~~~el~~~~P~~Gg~y~~~~~ 144 (584)
++++++|+++.+|+++++++.++|+|+|..++..+...+||..+++|+++++.+++.+++|+|+++++|++||.|.|+++
T Consensus 22 ~~~~L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~~~ls~liagv~~l~~al~yaElas~~P~sGg~Y~y~~~ 101 (557)
T TIGR00906 22 EESKMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPAIVLSFLISGLAAVLSGFCYAEFGARVPKAGSAYLYSYV 101 (557)
T ss_pred cccchhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceeeHHH
Confidence 34569999999999999999999999999999887655999999999999999999999999999999999999999999
Q ss_pred HhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcceecccc--ccccCcchhHHHHHHHHHHHHHhccch
Q 007943 145 ELGDFVAYIAAGNILFEYVVSGASVARSWTSYFATLCNHDPGSFRIHVSSV--AEDYSHLDPIAVIVSFFVCVGACLSMK 222 (584)
Q Consensus 145 ~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~ 222 (584)
.+||.+||++||.++++|....+..+..++.|+..+++.....+....... +........++++++++.+.+|.+|+|
T Consensus 102 ~~G~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~a~~ii~l~~~ln~~Gik 181 (557)
T TIGR00906 102 TVGELWAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYDGLAEYPDFFAVCLILLLAVLLSFGVK 181 (557)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCcccccchHHHHHHHHHHHHHHHhchh
Confidence 999999999999999999999999999999999887753211111000000 000012346677778888999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCC--------CCCCCchhHHHHHHHHHHHhhchhhhhhhhcccccCCC
Q 007943 223 GSSRFNSVATIVHIVILIFILITGLTQANTANYA--------IFAPNGVRGILKASAVLFFAYVGFDGVATLGEEVKNPG 294 (584)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--------~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~ 294 (584)
..+|++.+++.++++.++++++.++.+.+.+|+. ++.|.++.+++.+...++|+|.|+|.+++++||+|||+
T Consensus 182 ~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~~~~f~p~g~~g~l~g~~~~~faf~Gfd~v~~~aeE~knP~ 261 (557)
T TIGR00906 182 ESAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVLSGAATCFFAFIGFDAIATTGEEVKNPQ 261 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHhhCCchhccccccccCCCCCCcchHHHHHHHHHHHHHHhhHHHHHHhHHhccCcc
Confidence 9999999999999999988888888777666654 66777888899999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 007943 295 RDIPIGLIGSMVITITVYCVLSATLCLMQPYSQIDVDAPFTLAFQAVGMNWAKYIVALGALKGMTTVLLANVIGQARYFT 374 (584)
Q Consensus 295 r~~p~ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~ 374 (584)
||+||+++.++.+++++|++..+++....|+++++.++|+..+++..|.++...++.++++.+.+++.++.+++.+|+++
T Consensus 262 r~iP~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~~~~p~~~a~~~~g~~~~~~ii~~~~~~~~~~sl~~~~~~~sRil~ 341 (557)
T TIGR00906 262 RAIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFPVAFEYVGWGPAKYIVAVGALCGMSTSLLGGMFPLPRVIY 341 (557)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhccccHHHhCcCcHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999888888999999988988999999999999999999999999999999
Q ss_pred HHHhcCCCchhhhcccCccccchHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCC-c--
Q 007943 375 HIGRTHMAPPFLAAINGKTGTPVNATVVMSLANSVVAFFTSLDVLANLLSISTLFIFSLVALALLVRRYYVAGETS-E-- 451 (584)
Q Consensus 375 ~~ardg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~~-~-- 451 (584)
+|||||.+|++|+|+|||+++|++|++++++++.++.++.+++.+.++.+++.++.|.+.+++++++|++++.... |
T Consensus 342 amarDGlLP~~fakv~~r~~tP~~Ail~~~iv~~il~~~~~~~~l~~l~sig~ll~y~lv~~~~l~lR~~~~~~~~~~~~ 421 (557)
T TIGR00906 342 AMARDGLLFKWLAQINSKTKTPINATVVSGAIAALMAFLFDLKALVDLLSIGTLLAYSLVAACVLILRYQPGLVYGQAKD 421 (557)
T ss_pred HHHcCCCccHHHhccCCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccc
Confidence 9999999999999999999999999999999998888888999999999999999999999999999976521000 0
Q ss_pred ---------------------cchhHHHHHHHHHHHHHhHhhhhccccCCCcchh--hHHHHHHHHHHHHHhhhhhccCC
Q 007943 452 ---------------------CDQKKLIVFLALIISSSIASSAYWATSDNGWIGY--IVTVPVWFLATMGLQLTVKEARK 508 (584)
Q Consensus 452 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 508 (584)
.+...-..+...++...+.+...+..-...++.. ....+++.+.......+.++...
T Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (557)
T TIGR00906 422 TDEKDTLDSWVPFTSKSESQSEGFSLRTLFSGLILGLSILTTYGRAAIAEEAWSIALLTLFLVLFLLVVLTIWRQPQNKQ 501 (557)
T ss_pred ccccccccccccccccccccccchhHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 0000001111222222222222222111122222 22223333333333344444445
Q ss_pred CCccccccccHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhhcccc
Q 007943 509 PKMWGVPLLPWLPSACIAVNVFVMGSVDGQSFVRFMIWTFLLLVYYLFVALHASYD 564 (584)
Q Consensus 509 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~~~~ 564 (584)
+++||+|+.|++|.++++.|++++.+++..+|+.+..|+++|+++|+.|++||+++
T Consensus 502 ~~~f~~p~~p~~p~~~i~~~~~l~~~l~~~~~~~~~~w~~~g~~~y~~yg~~~s~~ 557 (557)
T TIGR00906 502 KVAFKVPLVPFLPALSILINIFLMVQLDADTWVRFAIWMAIGFLIYFLYGIRHSLE 557 (557)
T ss_pred CCCCCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhhhccCC
Confidence 88999999999999999999999999999999999999999999999999999864
No 2
>PRK15049 L-asparagine permease; Provisional
Probab=100.00 E-value=4.9e-57 Score=481.09 Aligned_cols=420 Identities=18% Similarity=0.285 Sum_probs=348.7
Q ss_pred ccccccccCHHHHHHHHHHHhhhhhhHHccHHhHhhccCchHHHHHHHHHHHHHHHHHHHHhhhhccccCCchhhhHHHH
Q 007943 66 EHEMKKNLNWWDLIWFGIGAVMGAGIFVLTGEAARNFAGPAVIISYLISGISALLSVLCYTEFSVELPVAGGSFAYLRVE 145 (584)
Q Consensus 66 ~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ii~~l~~~~~~~~~~el~~~~P~~Gg~y~~~~~~ 145 (584)
++++||+++.+|+.++++|++||+|+|..++..+.. +||..+++|+++++++++.+++++||++++|++||.|+|+++.
T Consensus 23 ~~~l~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~-aGp~~il~~li~~i~~~~v~~slaELas~~P~aGg~y~y~~~~ 101 (499)
T PRK15049 23 EEGYHKAMGNRQVQMIAIGGAIGTGLFLGAGARLQM-AGPALALVYLICGLFSFFILRALGELVLHRPSSGSFVSYAREF 101 (499)
T ss_pred chhhhccCCHhHhHHHhhhccccchHHHhhHHHHHh-cCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 345999999999999999999999999999999887 9999889999999999999999999999999999999999999
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcceeccccccccCcchhHHHHHHHHHHHHHhccchhHH
Q 007943 146 LGDFVAYIAAGNILFEYVVSGASVARSWTSYFATLCNHDPGSFRIHVSSVAEDYSHLDPIAVIVSFFVCVGACLSMKGSS 225 (584)
Q Consensus 146 ~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 225 (584)
+||.+||++||.+|+.|....+......+.+...+-... ..+ ...+.++++++.+++|++|+|..+
T Consensus 102 ~G~~~gf~~GW~~~l~~~~~~~~~~~a~~~~~~~~~~~~---------~~~-----~~~~~~~~~~l~~~iN~~gvk~~~ 167 (499)
T PRK15049 102 LGEKAAYVAGWMYFINWAMTGIVDITAVALYMHYWGAFG---------GVP-----QWVFALAALTIVGTMNMIGVKWFA 167 (499)
T ss_pred hCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC---------CCc-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998776666666666665331100 000 125577778889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcc---ccc-----CCC------CCCCCCchhHHHHHHHHHHHhhchhhhhhhhccccc
Q 007943 226 RFNSVATIVHIVILIFILITGLTQ---ANT-----ANY------AIFAPNGVRGILKASAVLFFAYVGFDGVATLGEEVK 291 (584)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~i~~~~~---~~~-----~~~------~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k 291 (584)
+++.+++.+|++.++.+++.++.. .++ .++ .++.|+++.+++.++..++|+|.|+|.+++++||+|
T Consensus 168 ~i~~~~~~iki~~l~~~ii~~i~~~~~~~~~~~~~~~f~~~~~~~~~~p~g~~~~~~~~~~~~faf~G~e~i~~~aeE~k 247 (499)
T PRK15049 168 EMEFWFALIKVLAIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHGLLPALVLIQGVVFAFASIEMVGTAAGECK 247 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhc
Confidence 999999999988877766555431 111 011 134456666777778889999999999999999999
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCC-CChHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 007943 292 NPGRDIPIGLIGSMVITITVYCVLSATLCLMQPYSQIDV-DAPFTLAFQAVGMNWAKYIVALGALKGMTTVLLANVIGQA 370 (584)
Q Consensus 292 ~p~r~~p~ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~~-~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~s 370 (584)
||+|++|||+..++..++++|++..++....+|+++++. ++|+.++++..|.++...++.+..+++.+++.++.+++.|
T Consensus 248 nP~r~iPrAi~~~~~~i~~~yi~~~~~~~~~~p~~~~~~~~sP~~~~~~~~g~~~~~~ii~~~ilia~~ss~ns~~~~~s 327 (499)
T PRK15049 248 DPQTMVPKAINSVIWRIGLFYVGSVVLLVMLLPWSAYQAGQSPFVTFFSKLGVPYIGSIMNIVVLTAALSSLNSGLYCTG 327 (499)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHheecchhccCcCCCHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999888753 5799999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCchhhhcccCccccchHHHHHHHHHHHHHHHh------hcHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 007943 371 RYFTHIGRTHMAPPFLAAINGKTGTPVNATVVMSLANSVVAFF------TSLDVLANLLSISTLFIFSLVALALLVRRYY 444 (584)
Q Consensus 371 R~l~~~ardg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~i~~r~~ 444 (584)
|++|+|||||.+|++|+|+| |+++|++|++++.+++++..++ ..++.+.++++.+.++.|.+++++.+++|++
T Consensus 328 R~l~a~Ardg~lP~~f~kv~-k~~~P~~Ail~~~~i~~l~~~l~~~~~~~~f~~l~~~~~~~~li~y~~~~~~~l~~R~~ 406 (499)
T PRK15049 328 RILRSMAMGGSAPSFMAKMS-RQHVPYAGILATLVVYVVGVFLNYLVPSRVFEIVLNFASLGIIASWAFIIVCQMRLRKA 406 (499)
T ss_pred HHHHHHHhcCCcCHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999 8899999999998876543222 3588999999999999999999999998876
Q ss_pred cCCCCCccchhHHHHHHHHHHHHHhHhhhhccccCCCcchhhHHHHHHHHHHHHHhhhhhccCCCCccccccccHHHHHH
Q 007943 445 VAGETSECDQKKLIVFLALIISSSIASSAYWATSDNGWIGYIVTVPVWFLATMGLQLTVKEARKPKMWGVPLLPWLPSAC 524 (584)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 524 (584)
.++ .++.+++||+|..|+.++++
T Consensus 407 ~~~---------------------------------------------------------~~~~~~pf~~~~~p~~~~~~ 429 (499)
T PRK15049 407 IKE---------------------------------------------------------GKAADVSFKLPGAPFTSWLT 429 (499)
T ss_pred hhh---------------------------------------------------------cCCCCCCCcccCccHHHHHH
Confidence 432 22345679999999999988
Q ss_pred HHHHHHHHhc-------CChhhHHHHHHHHHHHHHHHHHHhh
Q 007943 525 IAVNVFVMGS-------VDGQSFVRFMIWTFLLLVYYLFVAL 559 (584)
Q Consensus 525 ~~~~~~~~~~-------~~~~~~~~~~~~~~i~~~~y~~~~~ 559 (584)
++.+++++.. +++ +.+...++.++..++|+.+++
T Consensus 430 l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 470 (499)
T PRK15049 430 LLFLLSVLVLMAFDYPNGTY-TIAALPIIGILLVIGWFGVRK 470 (499)
T ss_pred HHHHHHHHHHHHHcCcchHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 8877776643 334 344455566666666766443
No 3
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=3.1e-56 Score=450.01 Aligned_cols=423 Identities=18% Similarity=0.274 Sum_probs=372.4
Q ss_pred ccccccCHHHHHHHHHHHhhhhhhHHccHHhHhhccCch-HHHHHHHHHHHHHHHHHHHHhhhhccccCCchhhhHHHHh
Q 007943 68 EMKKNLNWWDLIWFGIGAVMGAGIFVLTGEAARNFAGPA-VIISYLISGISALLSVLCYTEFSVELPVAGGSFAYLRVEL 146 (584)
Q Consensus 68 ~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ii~~l~~~~~~~~~~el~~~~P~~Gg~y~~~~~~~ 146 (584)
++||+|..+|+.++++|+.||+|+|+..|..+.+ +||+ ++++|++.+++.++++.+++||++.+|.+|+...|+.|..
T Consensus 41 ~lkR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~-aGP~g~li~y~i~G~~vy~vm~sLGEma~~~P~sGsF~~ya~rfv 119 (541)
T COG0833 41 ELKRSLKSRHLQMIAIGGAIGTGLFVGSGKALSQ-AGPAGLLIAYLIIGIMVYFVMQSLGELAVFYPVSGSFSTYATRFV 119 (541)
T ss_pred hhhhhhhHHHHHHHHhccccccceeeecchhhhc-cCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhhhhhc
Confidence 6999999999999999999999999999999998 9998 8999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcceeccccccccCcchhHHHHHHHHHHHHHhccchhHHH
Q 007943 147 GDFVAYIAAGNILFEYVVSGASVARSWTSYFATLCNHDPGSFRIHVSSVAEDYSHLDPIAVIVSFFVCVGACLSMKGSSR 226 (584)
Q Consensus 147 g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 226 (584)
+|.+||..||.||+.|....+....+.+..++.+++..-+ ...+..++.+++.++|.+|+|..+.
T Consensus 120 dpa~GFa~gWnYw~~w~v~~~~El~aa~~vi~yW~p~~v~---------------~~~w~~iF~~~i~~iN~~~Vk~fGE 184 (541)
T COG0833 120 DPAFGFALGWNYWLNWAVTLPLELTAASLVIQYWFPDTVP---------------PWIWIAIFLVLIFLLNLFGVKGFGE 184 (541)
T ss_pred CchHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhcCCCCC---------------hHHHHHHHHHHHHHHHHhcccccce
Confidence 9999999999999999999999999999999998854322 2277788889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc--cc-c-C------CC--CCCCCCchhHHHHHHHHHHHhhchhhhhhhhcccccCCC
Q 007943 227 FNSVATIVHIVILIFILITGLTQ--AN-T-A------NY--AIFAPNGVRGILKASAVLFFAYVGFDGVATLGEEVKNPG 294 (584)
Q Consensus 227 ~~~~~~~~~~~~~~~~~i~~~~~--~~-~-~------~~--~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~ 294 (584)
.+.+++.+|++.++.+++.++.. +. + + .+ .+.+++|+.+++..+..+.|+|.|.|.+...++|.|||+
T Consensus 185 ~Efw~s~iKV~~ii~Fii~gii~~~Gg~~~~~~ig~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP~ 264 (541)
T COG0833 185 TEFWFSSIKVLTIIGFIILGIIIICGGGPTHGYIGFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGESENPR 264 (541)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcceeeecCCCCCCcchHHHHHHHhhheeeeeceeeeeeeecccCCch
Confidence 99999999999999888887652 11 1 1 01 135567899999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCC---------CCChHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH
Q 007943 295 RDIPIGLIGSMVITITVYCVLSATLCLMQPYSQID---------VDAPFTLAFQAVGMNWAKYIVALGALKGMTTVLLAN 365 (584)
Q Consensus 295 r~~p~ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~---------~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 365 (584)
|++|||+......+.++|++..+.+...+|+++.+ ..+|+..++++.|.+.++.++++.++.+.+++.|+.
T Consensus 265 K~iPkAik~vfwRIl~FYi~si~~ig~lvPy~dp~Ll~~~~~~~~~SPFvia~~~~Gi~~~~~imNaVIL~svlSa~NS~ 344 (541)
T COG0833 265 KSIPKAIKQVFWRILLFYILSIFVIGLLVPYNDPRLLGNSSSGVAASPFVIAIKNAGIPVAASIMNAVILTSVLSAANSG 344 (541)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHheEEccCCCcccccCCcCCccCCChhHhHHhcCCccchHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999998732 246999999999999999999999999999999999
Q ss_pred HhhhHHHHHHHHhcCCCchhhhcccCccccchHHHHHHHHHHHHHHHh------hcHHHHHHHHHHHHHHHHHHHHHHHH
Q 007943 366 VIGQARYFTHIGRTHMAPPFLAAINGKTGTPVNATVVMSLANSVVAFF------TSLDVLANLLSISTLFIFSLVALALL 439 (584)
Q Consensus 366 ~~~~sR~l~~~ardg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~i 439 (584)
+|+.||++|+||+||..||+|+|+| |+|+|++|++++.+++++..+. ..|++|.++++++.++.|+.++++.+
T Consensus 345 lYasSR~L~sLA~~g~APk~f~~~~-r~GvP~~al~vt~~fg~lafl~~~~~~~~vf~wL~~isg~s~~i~W~~I~~shi 423 (541)
T COG0833 345 LYASSRMLYSLAKQGKAPKIFAKVD-RRGVPLVALLVTLLFGLLAFLNSSFKETTVFNWLLNISGLSGFIAWGSICLSHI 423 (541)
T ss_pred chHHHHHHHHHHhcCCCchHHHhhC-CCCCchHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 8899999999999998754444 26899999999999999999999999
Q ss_pred hhhhhcCCCCCccchhHHHHHHHHHHHHHhHhhhhccccCCCcchhhHHHHHHHHHHHHHhhhhhccCCCCccccccccH
Q 007943 440 VRRYYVAGETSECDQKKLIVFLALIISSSIASSAYWATSDNGWIGYIVTVPVWFLATMGLQLTVKEARKPKMWGVPLLPW 519 (584)
Q Consensus 440 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 519 (584)
++|+..+... +...+.+||.|++|+
T Consensus 424 rFR~A~~~QG-------------------------------------------------------~s~~~L~yks~~~p~ 448 (541)
T COG0833 424 RFRRAMKAQG-------------------------------------------------------RSLDELPYKSPFGPY 448 (541)
T ss_pred HHHHHHHHcC-------------------------------------------------------CChhhcCccCCCccH
Confidence 9998744321 234567899999999
Q ss_pred HHHHHHHHHHHHHhcCChhhHH----------HHHHHHHHHHHHHHHHhhhcc
Q 007943 520 LPSACIAVNVFVMGSVDGQSFV----------RFMIWTFLLLVYYLFVALHAS 562 (584)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~i~~~~y~~~~~~~~ 562 (584)
.|+.++++++.++...+|.+.. ...+-+.+.++.|+.|+..+|
T Consensus 449 g~~~~~~~~~li~i~q~y~af~p~~~~~~~F~~~Yl~~pi~i~~y~~yk~~~k 501 (541)
T COG0833 449 GPIYGLILCILILIGQGYVAFFPIGFSAGDFFAAYLGLPIFIAIYIGYKLYKK 501 (541)
T ss_pred HHHHHHHHHHHHHHHcchheeecCCccHHHHHHHHHHHHHHHHHHHHheeEec
Confidence 9999999999999886554432 334445556667777654443
No 4
>PRK11387 S-methylmethionine transporter; Provisional
Probab=100.00 E-value=4.2e-55 Score=465.47 Aligned_cols=423 Identities=18% Similarity=0.271 Sum_probs=348.7
Q ss_pred ccccccccCHHHHHHHHHHHhhhhhhHHccHHhHhhccCc-hHHHHHHHHHHHHHHHHHHHHhhhhccccCCchhhhHHH
Q 007943 66 EHEMKKNLNWWDLIWFGIGAVMGAGIFVLTGEAARNFAGP-AVIISYLISGISALLSVLCYTEFSVELPVAGGSFAYLRV 144 (584)
Q Consensus 66 ~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~-~~~~~~ii~~l~~~~~~~~~~el~~~~P~~Gg~y~~~~~ 144 (584)
++++||+++.+++.+++++.++|+|+|..++..+.. +|| +.+++|+++++++++.+++++||++++|++||.|.|+++
T Consensus 9 ~~~l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~-~G~~~~~l~~~i~~~~~~~~~~~~aELas~~P~aGG~y~y~~~ 87 (471)
T PRK11387 9 AGQFKRTMKVRHLVMLSLGGVIGTGLFFNTGYIIST-TGAAGTLLAYLIGALVVYLVMQCLGELSVAMPETGAFHVYAAR 87 (471)
T ss_pred chhhhhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 346899999999999999999999999999999887 887 489999999999999999999999999999999999999
Q ss_pred HhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcceeccccccccCcchhHHHHHHHHHHHHHhccchhH
Q 007943 145 ELGDFVAYIAAGNILFEYVVSGASVARSWTSYFATLCNHDPGSFRIHVSSVAEDYSHLDPIAVIVSFFVCVGACLSMKGS 224 (584)
Q Consensus 145 ~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 224 (584)
.+||.+||.+||.+|+++....+......+.++..+.+.. + .....+++.++++.+|++|+|..
T Consensus 88 ~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~---------------~~~~~~~~~~~~~~in~~gvk~~ 151 (471)
T PRK11387 88 YLGPATGYTVAWLYWLTWTVALGSSLTAAGFCMQYWFPQV-P---------------VWPWCLLFCALIFGLNVVSTRFF 151 (471)
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcC-c---------------HHHHHHHHHHHHHHHHHHhHHHH
Confidence 9999999999999999999888877777666665443211 1 11344555677889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc------ccc-------CCC--CCCCCCchhHHHHHHHHHHHhhchhhhhhhhccc
Q 007943 225 SRFNSVATIVHIVILIFILITGLTQ------ANT-------ANY--AIFAPNGVRGILKASAVLFFAYVGFDGVATLGEE 289 (584)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~i~~~~~------~~~-------~~~--~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E 289 (584)
++++.+.+.+|++.++.+++.++.. .+. +++ .++.|++..+++.++..++|+|.|+|.+++++||
T Consensus 152 ~~~~~~~~~~ki~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E 231 (471)
T PRK11387 152 AEGEFWFSLIKVVTILAFIVLGGAAIFGFIPMQDGSPAPGLRNLTAEGWFPHGGLPILMTMVAVNFAFSGTELIGIAAGE 231 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccCCCCCCcccHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 9999999999998887666655321 000 111 1233555667888888999999999999999999
Q ss_pred ccCCCCCchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCC-CCChHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHhh
Q 007943 290 VKNPGRDIPIGLIGSMVITITVYCVLSATLCLMQPYSQID-VDAPFTLAFQAVGMNWAKYIVALGALKGMTTVLLANVIG 368 (584)
Q Consensus 290 ~k~p~r~~p~ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~-~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (584)
+|||+|++|||+..++.++.++|++..+++....|.++.+ .++|+.++++..++++...++.+..+++.+++.++.+++
T Consensus 232 ~knP~r~iPrAi~~~~~~~~~~y~~~~~~~~~~~p~~~~~~~~~p~~~~~~~~g~~~~~~ii~~~~~~s~~~~~~~~~~~ 311 (471)
T PRK11387 232 TENPAKVIPVAIRTTIARLVIFFVGTVLVLAALIPMQQAGVEKSPFVLVFEKVGIPYAADIFNFVILTAILSAANSGLYA 311 (471)
T ss_pred hcChhhHHHHHHHHHHHHHHHHHHHHHHHHheecCccccCccCChHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988888887765 467999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhcCCCchhhhcccCccccchHHHHHHHHHHHHHHHh------hcHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007943 369 QARYFTHIGRTHMAPPFLAAINGKTGTPVNATVVMSLANSVVAFF------TSLDVLANLLSISTLFIFSLVALALLVRR 442 (584)
Q Consensus 369 ~sR~l~~~ardg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~i~~r 442 (584)
.||++++|||||.+|++|+|+| |+++|++|++++.+.+++..+. ..++.+.++.+...++.|++.+++.+++|
T Consensus 312 ~sR~l~a~ardg~lP~~f~~~~-~~~~P~~Ail~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~li~y~~~~~~~i~lr 390 (471)
T PRK11387 312 SGRMLWSLSNEGTLPACFARLT-KRGIPLTALSVSMLGGLLALFSSVVAPDTVFVALSAISGFAVVAVWLSICASHFMFR 390 (471)
T ss_pred hhHHHHHHHhcCCcCHHHHHhC-CCCCcHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 6799999999887655443332 23567888999999999999999999998
Q ss_pred hhcCCCCCccchhHHHHHHHHHHHHHhHhhhhccccCCCcchhhHHHHHHHHHHHHHhhhhhccCCCCccccccccHHHH
Q 007943 443 YYVAGETSECDQKKLIVFLALIISSSIASSAYWATSDNGWIGYIVTVPVWFLATMGLQLTVKEARKPKMWGVPLLPWLPS 522 (584)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 522 (584)
+++++.. ++..+++||+|..|+.|+
T Consensus 391 ~~~~~~~-------------------------------------------------------~~~~~~~~~~~~~~~~~~ 415 (471)
T PRK11387 391 RRHLRDG-------------------------------------------------------KALSELAYRAPWYPLTPI 415 (471)
T ss_pred HHHHhcC-------------------------------------------------------CCCCCCCccCCCccHHHH
Confidence 8865421 123467899999999999
Q ss_pred HHHHHHHHHHhcCChhh-----HHHHHHHHHHHHHHHHHHhhhc
Q 007943 523 ACIAVNVFVMGSVDGQS-----FVRFMIWTFLLLVYYLFVALHA 561 (584)
Q Consensus 523 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~i~~~~y~~~~~~~ 561 (584)
++++.+++++....... ......+++++++.|..++|++
T Consensus 416 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (471)
T PRK11387 416 LGFVLCLLACVGLAFDPSQRIALWCGIPFVALCYGAYYLTQRLK 459 (471)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99998888776543222 3344566666777776665543
No 5
>PRK10746 putative transport protein YifK; Provisional
Probab=100.00 E-value=1.3e-54 Score=458.86 Aligned_cols=427 Identities=18% Similarity=0.286 Sum_probs=360.8
Q ss_pred cccccccccCHHHHHHHHHHHhhhhhhHHccHHhHhhccCchHHHHHHHHHHHHHHHHHHHHhhhhccccCCchhhhHHH
Q 007943 65 SEHEMKKNLNWWDLIWFGIGAVMGAGIFVLTGEAARNFAGPAVIISYLISGISALLSVLCYTEFSVELPVAGGSFAYLRV 144 (584)
Q Consensus 65 ~~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ii~~l~~~~~~~~~~el~~~~P~~Gg~y~~~~~ 144 (584)
.++++||+++.+|+.++++|++||+|+|..++..+.. +||+.+++|++++++.++.+++++||++++|++||.|+|++|
T Consensus 4 ~~~~l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~-aGp~~~l~~~i~g~~~~~v~~~~aEl~~~~P~sGg~~~y~~~ 82 (461)
T PRK10746 4 NKPELQRGLEARHIELIALGGTIGVGLFMGAASTLKW-AGPSVLLAYIIAGLFVFFIMRSMGEMLFLEPVTGSFAVYAHR 82 (461)
T ss_pred CchHHhccCcHHHHHHHHHHhhhhhhHHHHhHHHHHh-cChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 3457899999999999999999999999999999987 999989999999999999999999999999999999999999
Q ss_pred HhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcceeccccccccCcchhHHHHHHHHHHHHHhccchhH
Q 007943 145 ELGDFVAYIAAGNILFEYVVSGASVARSWTSYFATLCNHDPGSFRIHVSSVAEDYSHLDPIAVIVSFFVCVGACLSMKGS 224 (584)
Q Consensus 145 ~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 224 (584)
.+||.+||.+||.+|+.+....+......+.+++.+++.. + ...+..+++++.+.+|++|+|..
T Consensus 83 ~~g~~~Gf~~gw~~~~~~~~~~~~~~~a~~~~l~~~~p~~-~---------------~~~~~~~~~~~~~~lN~~gv~~~ 146 (461)
T PRK10746 83 YMSPFFGYLTAWSYWFMWMAVGISEITAIGVYVQFWFPEM-A---------------QWIPALIAVALVALANLAAVRLY 146 (461)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC-c---------------hHHHHHHHHHHHHHHHHHhHHHH
Confidence 9999999999999999999988888888888887765421 1 11455666778888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc-----c---c---cCCCC---CCCCCchhHHHHHHHHHHHhhchhhhhhhhcccc
Q 007943 225 SRFNSVATIVHIVILIFILITGLTQ-----A---N---TANYA---IFAPNGVRGILKASAVLFFAYVGFDGVATLGEEV 290 (584)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~i~~~~~-----~---~---~~~~~---~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~ 290 (584)
+++|.+++.+|+..++++++.++.. . + .+++. ++.++++.++..++..++|+|.|+|.+++.+||+
T Consensus 147 ~~~e~~~~~~ki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~E~ 226 (461)
T PRK10746 147 GEIEFWFAMIKVTTIIVMIVIGLGVIFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGEA 226 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHh
Confidence 9999999999988876666544321 1 1 12221 2445678889999999999999999999999999
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCC-CChHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007943 291 KNPGRDIPIGLIGSMVITITVYCVLSATLCLMQPYSQIDV-DAPFTLAFQAVGMNWAKYIVALGALKGMTTVLLANVIGQ 369 (584)
Q Consensus 291 k~p~r~~p~ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~~-~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (584)
|||+|++|||+..+...+.++|++..+++....|+++... ++|+.++++..|.+....++++..+++.+++.++.+++.
T Consensus 227 knP~k~iP~Ai~~~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp~v~~~~~~g~~~~~~i~~~~il~a~~s~~n~~~~~~ 306 (461)
T PRK10746 227 KNPQVTLRSAVGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTFAKIGITAAAGIINFVVLTAALSGCNSGMYSC 306 (461)
T ss_pred cChhhHHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCCCCCCcHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998864 569999999999888889999999999999999999999
Q ss_pred HHHHHHHHhcCCCchhhhcccCccccchHHHHHHHHHHHHHH---Hh-----hcHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007943 370 ARYFTHIGRTHMAPPFLAAINGKTGTPVNATVVMSLANSVVA---FF-----TSLDVLANLLSISTLFIFSLVALALLVR 441 (584)
Q Consensus 370 sR~l~~~ardg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~---~~-----~~~~~l~~~~~~~~~~~~~~~~~~~i~~ 441 (584)
||++++|||||.+|++|+|+| |+|+|++|++++.+...+.. +. ..++.+.++++.+.++.|+.++++.+++
T Consensus 307 sR~l~~~a~~g~lP~~~~~~~-~~g~P~~al~~~~~~~~l~~~~~~~~~~~~~~f~~l~~~~~~~~~i~w~~i~~~~i~~ 385 (461)
T PRK10746 307 GRMLYALAKNRQLPAAMAKVS-RHGVPVAGVAVSILILLVGSCLNYIIPNPQRVFVYVYSASVLPGMVPWFVILISQLRF 385 (461)
T ss_pred HHHHHHHHhCCCcCHHHHHhC-CCCCcHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 88999999998865443211 11 2478899999999999999999999999
Q ss_pred hhhcCCCCCccchhHHHHHHHHHHHHHhHhhhhccccCCCcchhhHHHHHHHHHHHHHhhhhhccCCCCccccccccHHH
Q 007943 442 RYYVAGETSECDQKKLIVFLALIISSSIASSAYWATSDNGWIGYIVTVPVWFLATMGLQLTVKEARKPKMWGVPLLPWLP 521 (584)
Q Consensus 442 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 521 (584)
|+++|+ ..++++||.|++|+.+
T Consensus 386 r~~~~~----------------------------------------------------------~~~~~~~~~~~~p~~~ 407 (461)
T PRK10746 386 RRAHKA----------------------------------------------------------AIASHPFRSILFPWAN 407 (461)
T ss_pred HHhccc----------------------------------------------------------cccCCCCcCCCccHHH
Confidence 988653 1235689999999999
Q ss_pred HHHHHHHHHHHhcCC-----hhhHHHHHHHHHHHHHHHHHHhhhcccchhh
Q 007943 522 SACIAVNVFVMGSVD-----GQSFVRFMIWTFLLLVYYLFVALHASYDAAK 567 (584)
Q Consensus 522 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~i~~~~y~~~~~~~~~~~~~ 567 (584)
+++++.++.++..+. ..+......++++..+.|+.|++.+|.+.+|
T Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~ 458 (461)
T PRK10746 408 YLTMAFLICVLIGMYFNEDTRMSLFVGIIFLLAVTLIYKVFGLNRHGKAHK 458 (461)
T ss_pred HHHHHHHHHHHHHHHHCccHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhh
Confidence 999988888755542 1345555666777888888877766655444
No 6
>PRK10249 phenylalanine transporter; Provisional
Probab=100.00 E-value=1.4e-54 Score=459.12 Aligned_cols=415 Identities=20% Similarity=0.326 Sum_probs=351.0
Q ss_pred cccccccccCHHHHHHHHHHHhhhhhhHHccHHhHhhccCchHHHHHHHHHHHHHHHHHHHHhhhhccccCCchhhhHHH
Q 007943 65 SEHEMKKNLNWWDLIWFGIGAVMGAGIFVLTGEAARNFAGPAVIISYLISGISALLSVLCYTEFSVELPVAGGSFAYLRV 144 (584)
Q Consensus 65 ~~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ii~~l~~~~~~~~~~el~~~~P~~Gg~y~~~~~ 144 (584)
++++++|+++.+|+.++++|.++|+|+|..++..+.. +||..+++|+++++++++.+++++||++++|++||.|.|+++
T Consensus 15 ~~~~l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~-aGp~~~l~~li~~~~~~~~~~~~aEl~~~~P~~Gg~~~y~~~ 93 (458)
T PRK10249 15 QEPTLHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQM-AGPAVLLGYGVAGIIAFLIMRQLGEMVVEEPVSGSFAHFAYK 93 (458)
T ss_pred CchhhhccCcHhHhhhhhhhcccchhHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHH
Confidence 5567999999999999999999999999999999987 999999999999999999999999999999999999999999
Q ss_pred HhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcceeccccccccCcchhHHHHHHHHHHHHHhccchhH
Q 007943 145 ELGDFVAYIAAGNILFEYVVSGASVARSWTSYFATLCNHDPGSFRIHVSSVAEDYSHLDPIAVIVSFFVCVGACLSMKGS 224 (584)
Q Consensus 145 ~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 224 (584)
.+||.+||.+||.+|+.+....+......+.++..+++.. + ...+..+++++.+.+|++|+|..
T Consensus 94 ~~g~~~gf~~gw~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~---------------~~~~~~~~~~l~~~lN~~gv~~~ 157 (458)
T PRK10249 94 YWGPFAGFLSGWNYWVMFVLVGMAELTAAGIYMQYWFPDV-P---------------TWIWAAAFFIIINAVNLVNVRLY 157 (458)
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcC-c---------------HHHHHHHHHHHHHHHHHhcchhh
Confidence 9999999999999999999888888888888887654321 1 12556777888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc---ccc------cCC-C--CCCCCCchhHHHHHHHHHHHhhchhhhhhhhcccccC
Q 007943 225 SRFNSVATIVHIVILIFILITGLT---QAN------TAN-Y--AIFAPNGVRGILKASAVLFFAYVGFDGVATLGEEVKN 292 (584)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~i~~~~---~~~------~~~-~--~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~ 292 (584)
++++.+++.+|++.++.+++.++. ..+ .++ + .++.|+++.+++.++..++|+|.|+|.+++++||+||
T Consensus 158 ~~i~~~~~~ikv~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~a~E~~~ 237 (458)
T PRK10249 158 GETEFWFALIKVLAIIGMIGFGLWLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAEARD 237 (458)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhccCCCCCCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHHhcC
Confidence 999999999998777666555432 111 111 1 1234567888999999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCC-CChHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 007943 293 PGRDIPIGLIGSMVITITVYCVLSATLCLMQPYSQIDV-DAPFTLAFQAVGMNWAKYIVALGALKGMTTVLLANVIGQAR 371 (584)
Q Consensus 293 p~r~~p~ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~~-~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR 371 (584)
|+|++|||+..+...+.++|++..++.....|+++... ++|+.++++..++++...++.+..+++.+++.++.+++.||
T Consensus 238 P~k~iPrai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~sR 317 (458)
T PRK10249 238 PEKSIPKAVNQVVYRILLFYIGSLVVLLALYPWVEVKSNSSPFVMIFHNLDSNVVASALNFVILVASLSVYNSGVYSNSR 317 (458)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHheeccccccCccCCcHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888888888887653 57999999988889999999999999999999999999999
Q ss_pred HHHHHHhcCCCchhhhcccCccccchHHHHHHHHHHHHHHHh------hcHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 007943 372 YFTHIGRTHMAPPFLAAINGKTGTPVNATVVMSLANSVVAFF------TSLDVLANLLSISTLFIFSLVALALLVRRYYV 445 (584)
Q Consensus 372 ~l~~~ardg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~i~~r~~~ 445 (584)
++|+|||||.+|++|+|+| |+++|++|++++.+++.+..++ ..++.+.++++...++.|++++++.+++|++.
T Consensus 318 ~l~a~ardg~lP~~~~kv~-~~~~P~~All~~~~i~~l~~l~~~~~~~~~f~~l~~~~~~~~~i~y~~~~~~~l~~r~~~ 396 (458)
T PRK10249 318 MLFGLSVQGNAPKFLTRVS-RRGVPINSLMLSGAITSLVVLINYLLPQKAFGLLMALVVATLLLNWIMICLAHLRFRAAM 396 (458)
T ss_pred HHHHHhcCCCcCHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999 7799999999999998766544 25788999999999999999999999988753
Q ss_pred CCCCCccchhHHHHHHHHHHHHHhHhhhhccccCCCcchhhHHHHHHHHHHHHHhhhhhccCCCCccccccccHHHHHHH
Q 007943 446 AGETSECDQKKLIVFLALIISSSIASSAYWATSDNGWIGYIVTVPVWFLATMGLQLTVKEARKPKMWGVPLLPWLPSACI 525 (584)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 525 (584)
+ ++..+++||.|+.|+.+++++
T Consensus 397 ~----------------------------------------------------------~~~~~~p~~~~~~p~~~~~~l 418 (458)
T PRK10249 397 R----------------------------------------------------------RQGRETQFKALLYPFGNYLCI 418 (458)
T ss_pred H----------------------------------------------------------hcCCCCCccCCCccHHHHHHH
Confidence 3 223455788899999999888
Q ss_pred HHHHHHHh------cCChhhHHHHHHHHHHHHHHHHH
Q 007943 526 AVNVFVMG------SVDGQSFVRFMIWTFLLLVYYLF 556 (584)
Q Consensus 526 ~~~~~~~~------~~~~~~~~~~~~~~~i~~~~y~~ 556 (584)
+...+++. ++|+ +.+..+.++++..+.|..
T Consensus 419 ~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 454 (458)
T PRK10249 419 AFLGMILLLMCTMDDMRL-SAILLPVWIVFLFVAFKT 454 (458)
T ss_pred HHHHHHHHHHHHcchHHH-HHHHHHHHHHHHHHHHHh
Confidence 88877774 3455 444555555544444443
No 7
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=100.00 E-value=3.7e-55 Score=433.21 Aligned_cols=422 Identities=23% Similarity=0.367 Sum_probs=376.7
Q ss_pred cccccccccCHHHHHHHHHHHhhhhhhHHccHHhHhhccCchHHHHHHHHHHHHHHHHHHHHhhhhccccCCchhhhHHH
Q 007943 65 SEHEMKKNLNWWDLIWFGIGAVMGAGIFVLTGEAARNFAGPAVIISYLISGISALLSVLCYTEFSVELPVAGGSFAYLRV 144 (584)
Q Consensus 65 ~~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ii~~l~~~~~~~~~~el~~~~P~~Gg~y~~~~~ 144 (584)
+++++||.|+.+|..++++|+.||+|+|...+...+. +||+.++++++++++.+.++..++||...-|++|+..+|+++
T Consensus 7 ~~~~l~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~-AGPSvlLaY~I~G~~~f~iMRaLGEm~~~~p~~gSF~~~a~~ 85 (462)
T COG1113 7 EEQGLKRGLKNRHIQLIAIGGAIGTGLFLGSGSAIAM-AGPSVLLAYLIAGIFVFLIMRALGEMLVANPVSGSFSDYARK 85 (462)
T ss_pred cchhhhhhhHHHHHHHHHHhhhhhhhhhcccchhhhh-hCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHH
Confidence 4566999999999999999999999999999999988 999999999999999999999999999999999999999999
Q ss_pred HhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcceeccccccccCcchhHHHHHHHHHHHHHhccchhH
Q 007943 145 ELGDFVAYIAAGNILFEYVVSGASVARSWTSYFATLCNHDPGSFRIHVSSVAEDYSHLDPIAVIVSFFVCVGACLSMKGS 224 (584)
Q Consensus 145 ~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 224 (584)
.+||+.||.+||.||+.+++...+...+.+.|++.+++.. |.| +.+++++++...+|..++|..
T Consensus 86 ~lG~~Agf~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP~v-P~W---------------v~al~~~~l~~~~NL~sVk~F 149 (462)
T COG1113 86 YLGPWAGFLTGWTYWFFWVLVGIAELTAIGIYLQFWFPDV-PQW---------------VFALAAVVLLLAVNLISVKVF 149 (462)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-cHH---------------HHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999765 444 778888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc------c-----ccCCCC---CCCCCchhHHHHHHHHHHHhhchhhhhhhhcccc
Q 007943 225 SRFNSVATIVHIVILIFILITGLTQ------A-----NTANYA---IFAPNGVRGILKASAVLFFAYVGFDGVATLGEEV 290 (584)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~i~~~~~------~-----~~~~~~---~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~ 290 (584)
++.+.++..+|++.++.+++.+... . +.+|.. +|+|+|+.+++.++..++|+|.|.|.+...++|+
T Consensus 150 GE~EfWfAlIKV~aIi~~Iv~G~~ll~~g~~~~~~~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~Et 229 (462)
T COG1113 150 GELEFWFALIKVAAIIAFIVVGIVLLFGGFGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAEA 229 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHhh
Confidence 9999999999999999888877542 1 112222 6899999999999999999999999999999999
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCC-CChHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007943 291 KNPGRDIPIGLIGSMVITITVYCVLSATLCLMQPYSQIDV-DAPFTLAFQAVGMNWAKYIVALGALKGMTTVLLANVIGQ 369 (584)
Q Consensus 291 k~p~r~~p~ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~~-~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (584)
|||+|++|||+......+.++|+....++....|++++++ ++|+...++..|.++.+.++++.++.+.++++|+.+++.
T Consensus 230 ~dP~k~ipkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~SPFV~~f~~iGi~~Aa~i~N~VVLtAa~S~~NSglyst 309 (462)
T COG1113 230 KDPEKAIPKAINSVIWRILIFYVGSLFVILSLYPWNQIGEDGSPFVTVFSLIGIPFAAGIMNFVVLTAALSALNSGLYST 309 (462)
T ss_pred cChhhHHHHHHhhhhHHHHHHHHHHHHHHheeccccccCCCCCcHHHHHHHcCCcccccceeEEEeechhhccccccccc
Confidence 9999999999999999999999999999999999999865 569999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCchhhhcccCccccchHHHHHHHHHHHHHHHh------hcHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 007943 370 ARYFTHIGRTHMAPPFLAAINGKTGTPVNATVVMSLANSVVAFF------TSLDVLANLLSISTLFIFSLVALALLVRRY 443 (584)
Q Consensus 370 sR~l~~~ardg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~i~~r~ 443 (584)
+|++|++|+||..||.++|+| |+++|++|++++.+...+...+ ..|+.+.+.++.+.+..|+++.++.+++|+
T Consensus 310 sRmL~~la~~g~APk~~~kls-k~gVP~~ai~~s~~~~~~~V~Lny~~P~~vF~~v~s~s~~~~l~vW~~I~~s~l~~rk 388 (462)
T COG1113 310 SRMLYSLAKQGDAPKAFAKLS-KRGVPVNAILLSAVVLLLGVVLNYILPEKVFELVTSSSGLGLLFVWLMILLSQLKLRK 388 (462)
T ss_pred chHHHHHhhcCcccHhHhhcc-ccCCCHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999 8999999999998877665555 468999999999999999999999999998
Q ss_pred hcCCCCCccchhHHHHHHHHHHHHHhHhhhhccccCCCcchhhHHHHHHHHHHHHHhhhhhccCCCCccccccccHHHHH
Q 007943 444 YVAGETSECDQKKLIVFLALIISSSIASSAYWATSDNGWIGYIVTVPVWFLATMGLQLTVKEARKPKMWGVPLLPWLPSA 523 (584)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 523 (584)
+++ +..++.+||+|+.|+..++
T Consensus 389 ~~~----------------------------------------------------------~~~~~~~fkm~~~p~~~~l 410 (462)
T COG1113 389 AKP----------------------------------------------------------AEGKKLKFKMPLYPFTNYL 410 (462)
T ss_pred cch----------------------------------------------------------hcccCcccccccccHHHHH
Confidence 543 4456667999999999999
Q ss_pred HHHHHHHHHhcCCh-----hhHHHHHHHHHHHHHHHHHHhhhcc
Q 007943 524 CIAVNVFVMGSVDG-----QSFVRFMIWTFLLLVYYLFVALHAS 562 (584)
Q Consensus 524 ~~~~~~~~~~~~~~-----~~~~~~~~~~~i~~~~y~~~~~~~~ 562 (584)
++++..+++..|.. .+......|+++-.+.|+.+++|++
T Consensus 411 ~l~fl~~vlv~m~~~~~t~~~~~~~~~~~~~l~i~~~~~~~~~~ 454 (462)
T COG1113 411 TLAFLAFVLVLMLFDPDTRISLLVGPVWLVLLGIGYLVKRKKKA 454 (462)
T ss_pred HHHHHHHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 99988888776522 2344455666666666655554443
No 8
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=100.00 E-value=2e-53 Score=450.18 Aligned_cols=421 Identities=21% Similarity=0.313 Sum_probs=352.6
Q ss_pred cccccccccCHHHHHHHHHHHhhhhhhHHccHHhHhhccCch-HHHHHHHHHHHHHHHHHHHHhhhhccccCCchhhhHH
Q 007943 65 SEHEMKKNLNWWDLIWFGIGAVMGAGIFVLTGEAARNFAGPA-VIISYLISGISALLSVLCYTEFSVELPVAGGSFAYLR 143 (584)
Q Consensus 65 ~~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ii~~l~~~~~~~~~~el~~~~P~~Gg~y~~~~ 143 (584)
|++++||+++.++.++++++.++| |.+...+..+.. +||. .++++++++++.++.+++++|+++++|++||.|.|++
T Consensus 1 ~~~~l~r~l~~~~~~~l~~~~~ig-g~~~~~~~~~~~-~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~~P~~Gg~y~~~~ 78 (442)
T TIGR00908 1 QHRQLKKTLATWQLWGIGVGYVIS-GDYAGWNFGLAQ-GGWGGFVVATLLVATMYLTFCFSLAELSTMIPTAGGGYGFAR 78 (442)
T ss_pred CCchhhccCCHHHHHHhHHHHHhh-ccchhHhhHHHH-hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 356799999999999999999997 777776766666 8886 7889999999999999999999999999999999999
Q ss_pred HHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcceeccccccccCcchhHHHHHHHHHHHHHhccchh
Q 007943 144 VELGDFVAYIAAGNILFEYVVSGASVARSWTSYFATLCNHDPGSFRIHVSSVAEDYSHLDPIAVIVSFFVCVGACLSMKG 223 (584)
Q Consensus 144 ~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 223 (584)
+.+||.+||.+||.+++.+....+.++..+++|++..++... .....++++++...+|++|+|.
T Consensus 79 ~~~G~~~gf~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p~~~----------------~~~~~~~~~~~~~~ln~~g~~~ 142 (442)
T TIGR00908 79 RAFGPWGGFLAGTAILIEFAFAPPAIACFIGAYCESLFPVGP----------------GWLAALVFYIVFIGINILGVGE 142 (442)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc----------------hhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988764321 1156667777889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccCCC--------CCCCCCchhHHHHHHHHHHHhhchhhhhhhhcccccCCCC
Q 007943 224 SSRFNSVATIVHIVILIFILITGLTQANTANY--------AIFAPNGVRGILKASAVLFFAYVGFDGVATLGEEVKNPGR 295 (584)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--------~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~r 295 (584)
.++++.+...++++.+++++.....+.+..++ .++.+.++.+++.++..++|+|.|+|.+++++||+|||+|
T Consensus 143 ~~~i~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r 222 (442)
T TIGR00908 143 AAKLEFVVTAVAIIALGVFIGAMVPHFDSANLFNGPQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEETKNPKR 222 (442)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHhccCCHHHhccCCccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 99999999998887765554443332222221 2344556678888999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCC-CCChHHHHHHHh-Cc-hHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 007943 296 DIPIGLIGSMVITITVYCVLSATLCLMQPYSQID-VDAPFTLAFQAV-GM-NWAKYIVALGALKGMTTVLLANVIGQARY 372 (584)
Q Consensus 296 ~~p~ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~-~~~p~~~~~~~~-g~-~~~~~~~~~~~~~~~~~~~~~~~~~~sR~ 372 (584)
|+|||++.+..++.++|+..........+.+++. .++|+.++++.. |+ .+...++.+..+++.+++.++.+++.+|+
T Consensus 223 ~iprai~~s~~~~~~~~~~~~~~~~g~~~~~~l~~~~~p~~~~~~~~~g~~~~~~~~i~~~~~~~~~~s~~~~~~~~sR~ 302 (442)
T TIGR00908 223 DIPRGLIGAILTLLALAAGILVVGPGAADAKELMGSNNPLPEALESIYGGSTWMSQFVNLVGLFGLIASFHGIIYGYSRQ 302 (442)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhcCCCHHHhCCCcchHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998877776667776664 467998888865 33 46667777778888899999999999999
Q ss_pred HHHHHhcCCCchhhhcccCccccchHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCcc
Q 007943 373 FTHIGRTHMAPPFLAAINGKTGTPVNATVVMSLANSVVAFFTSLDVLANLLSISTLFIFSLVALALLVRRYYVAGETSEC 452 (584)
Q Consensus 373 l~~~ardg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~~~~ 452 (584)
+++|||||.+|++|+|+| |+|+|++|++++.+++.++.+.++.+.+.++.+.+.++.|.+.+++++++|+++|
T Consensus 303 l~a~ardg~lP~~~~~~~-~~~~P~~Ail~~~~i~~~~~l~~~~~~l~~~~~~~~~~~y~~~~~a~i~lr~~~p------ 375 (442)
T TIGR00908 303 IFALSRAGYLPESLSKVN-RKKAPVLAIVVPGVIGFGLSLTGQTALIILVSVFGAIISYVLSMAAHFTLRIRRP------ 375 (442)
T ss_pred HHHHHhcCCccHHHHHhC-CCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------
Confidence 999999999999999999 9999999999999999888777777888899999999999999999999988743
Q ss_pred chhHHHHHHHHHHHHHhHhhhhccccCCCcchhhHHHHHHHHHHHHHhhhhhccCCCCccccccccHHHHHHHHHHHHHH
Q 007943 453 DQKKLIVFLALIISSSIASSAYWATSDNGWIGYIVTVPVWFLATMGLQLTVKEARKPKMWGVPLLPWLPSACIAVNVFVM 532 (584)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 532 (584)
+.++|||.|..|+.|+++++.+++++
T Consensus 376 ------------------------------------------------------~~~rp~~~p~~~~~~~l~~~~~~~~l 401 (442)
T TIGR00908 376 ------------------------------------------------------DMERPYRTPGGILTPGVALVLACVAL 401 (442)
T ss_pred ------------------------------------------------------CCCCCccCCCcchHHHHHHHHHHHHH
Confidence 34567899999999999999998887
Q ss_pred hcC---ChhhHHHHHHHHHHHHHHHHHHhhhcccc
Q 007943 533 GSV---DGQSFVRFMIWTFLLLVYYLFVALHASYD 564 (584)
Q Consensus 533 ~~~---~~~~~~~~~~~~~i~~~~y~~~~~~~~~~ 564 (584)
..+ ++..+.....++++..++|+.|+|+|+.+
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 436 (442)
T TIGR00908 402 VTGFYVDPRVVVGAVAIFVVLIGYYFLYSRHHLVS 436 (442)
T ss_pred HHHHHcChHHHHHHHHHHHHHHHHHHhhhhchhhc
Confidence 764 33334445677777888888887776655
No 9
>TIGR00909 2A0306 amino acid transporter.
Probab=100.00 E-value=8.1e-53 Score=444.62 Aligned_cols=425 Identities=31% Similarity=0.569 Sum_probs=374.2
Q ss_pred cccccCHHHHHHHHHHHhhhhhhHHccHHhHhhccCchHHHHHHHHHHHHHHHHHHHHhhhhccccCCchhhhHHHHhch
Q 007943 69 MKKNLNWWDLIWFGIGAVMGAGIFVLTGEAARNFAGPAVIISYLISGISALLSVLCYTEFSVELPVAGGSFAYLRVELGD 148 (584)
Q Consensus 69 l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ii~~l~~~~~~~~~~el~~~~P~~Gg~y~~~~~~~g~ 148 (584)
++|++|.+|.+++.++.++|+|++..++..... +|+..+++|++++++.++.+++++|+++++|++||.|+|+++.+||
T Consensus 1 l~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~-~G~~~~l~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~G~ 79 (429)
T TIGR00909 1 LSRELGLFDLTMLGIGAMIGTGIFVVTGIAAGK-AGPAVILSFVLAGLTALFIALVYAELAAMLPVAGSPYTYAYEAMGE 79 (429)
T ss_pred CCccccHHHHHHHHHhhhhcchHHHhHHHHHHH-cCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcceeeHHHHhCc
Confidence 579999999999999999999999999998776 8999889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC---CCCCcceeccccccccCcchhHHHHHHHHHHHHHhccchhHH
Q 007943 149 FVAYIAAGNILFEYVVSGASVARSWTSYFATLCNH---DPGSFRIHVSSVAEDYSHLDPIAVIVSFFVCVGACLSMKGSS 225 (584)
Q Consensus 149 ~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 225 (584)
..|+..||.+++++....+..+..+++++..+++. +.+.+.. ..+.+........++++++.+.+|++|+|..+
T Consensus 80 ~~g~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~l~~~g~~~~~ 156 (429)
T TIGR00909 80 LTAFIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVGLDLPAVLT---AKPGNGGVFNLPALLIVLFLTYILYLGAKESG 156 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhhh---cCCcccccccHHHHHHHHHHHHHHHhCcHHHH
Confidence 99999999999999999999999999999887752 1111100 00001111224567788899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCCCCchhHHHHHHHHHHHhhchhhhhhhhcccccCCCCCchhHHHHHH
Q 007943 226 RFNSVATIVHIVILIFILITGLTQANTANYAIFAPNGVRGILKASAVLFFAYVGFDGVATLGEEVKNPGRDIPIGLIGSM 305 (584)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~r~~p~ai~~~~ 305 (584)
|++.+...+++..++++++.++.+.+.+++.++.|.++.++..++...+|+|.|+|.+.+++||+|||+|++||+++.+.
T Consensus 157 ~~~~v~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~r~ip~ai~~~~ 236 (429)
T TIGR00909 157 KVNDILVVLKVAALLLFAALGAIHFASNNYTPFMPMGFGGVGAATALVFFAFIGFEAISTAAEEVKNPERDIPKAIILSL 236 (429)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHhhCcHHhcCCCCCCcHHHHHHHHHHHHHHHhhHHHHHhhHHhccCccccccHHHHHHH
Confidence 99999999999988877777776666667776667778888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCC-CCChHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCch
Q 007943 306 VITITVYCVLSATLCLMQPYSQID-VDAPFTLAFQAVGMNWAKYIVALGALKGMTTVLLANVIGQARYFTHIGRTHMAPP 384 (584)
Q Consensus 306 ~~~~i~y~l~~~~~~~~~~~~~~~-~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~ardg~lP~ 384 (584)
.++.++|++..+......|.+++. ++.|+..+.+..++++...++.+..+++.+++.++.+.+.||+++++||||.+|+
T Consensus 237 ~~~~v~Yil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP~ 316 (429)
T TIGR00909 237 IVVTLLYVLVAAVILGAVPWRQLAGSTAPLSLVGYDLGQGIGGLILTAGAVFSIASVMLAGIYGTSRVLFAMSRDGLLPG 316 (429)
T ss_pred HHHHHHHHHHHHHHhcCcCHHHhCCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcH
Confidence 999999999999988888887764 4568888888888899999999999999999999999999999999999999999
Q ss_pred hhhcccCccccchHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCccchhHHHHHHHHH
Q 007943 385 FLAAINGKTGTPVNATVVMSLANSVVAFFTSLDVLANLLSISTLFIFSLVALALLVRRYYVAGETSECDQKKLIVFLALI 464 (584)
Q Consensus 385 ~~~~~~~~~~~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~~~~~~~~~~~~~~~~ 464 (584)
+|+|+|||+++|++|++++++++.++....+++.+.++.+.+.++.|++.+++.+++|+|+|
T Consensus 317 ~~~~~~~~~~~P~~a~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~a~~~lr~~~~------------------ 378 (429)
T TIGR00909 317 SLSKVHPKTGTPHMSIIIFSLTAALLASLVPLEGLAELTSIGTLIAFAAVNVAVIILRRRRP------------------ 378 (429)
T ss_pred HHHHcCCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC------------------
Confidence 99999999999999999999999887777889999999999999999999999999988744
Q ss_pred HHHHhHhhhhccccCCCcchhhHHHHHHHHHHHHHhhhhhccCCCCccccccccHHHHHHHHHHHHHHhcCChhhHHHHH
Q 007943 465 ISSSIASSAYWATSDNGWIGYIVTVPVWFLATMGLQLTVKEARKPKMWGVPLLPWLPSACIAVNVFVMGSVDGQSFVRFM 544 (584)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (584)
+.+++||.|..|+.+.+.+..+.++....++.+.....
T Consensus 379 ------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (429)
T TIGR00909 379 ------------------------------------------DIQRAFRCPLVPVLPVLVVSYCIYLLLNLGPGTTVWFL 416 (429)
T ss_pred ------------------------------------------CCCCCCCCCcchHHHHHHHHHHHHHHHHccHHHHHHHH
Confidence 33567888899999999988899988888998888999
Q ss_pred HHHHHHHHHHHHH
Q 007943 545 IWTFLLLVYYLFV 557 (584)
Q Consensus 545 ~~~~i~~~~y~~~ 557 (584)
.|.++|..+|..|
T Consensus 417 ~~~~~g~~~y~~~ 429 (429)
T TIGR00909 417 VWMLLGSVFYFIY 429 (429)
T ss_pred HHHHHHHHHHHcC
Confidence 9999999998653
No 10
>PRK10238 aromatic amino acid transporter; Provisional
Probab=100.00 E-value=8.1e-53 Score=445.38 Aligned_cols=365 Identities=21% Similarity=0.348 Sum_probs=318.9
Q ss_pred cccccccccCHHHHHHHHHHHhhhhhhHHccHHhHhhccCchHHHHHHHHHHHHHHHHHHHHhhhhccccCCchhhhHHH
Q 007943 65 SEHEMKKNLNWWDLIWFGIGAVMGAGIFVLTGEAARNFAGPAVIISYLISGISALLSVLCYTEFSVELPVAGGSFAYLRV 144 (584)
Q Consensus 65 ~~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ii~~l~~~~~~~~~~el~~~~P~~Gg~y~~~~~ 144 (584)
.++++||+++.+|..+++++++||+|+|..++..+.. +||..+++|++++++.++.+++++|+++++|.+||.|+|+++
T Consensus 6 ~~~~l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~-~Gp~~i~~~~i~gi~~~~v~~s~aEl~s~~P~aGg~y~~~~~ 84 (456)
T PRK10238 6 HGEQLKRGLKNRHIQLIALGGAIGTGLFLGSASVIQS-AGPGIILGYAIAGFIAFLIMRQLGEMVVEEPVAGSFSHFAYK 84 (456)
T ss_pred cchhhhccCcHHHHHHHHhhccccchHHHhhHHHHHh-cCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 3456999999999999999999999999999999987 899999999999999999999999999999999999999999
Q ss_pred HhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcceeccccccccCcchhHHHHHHHHHHHHHhccchhH
Q 007943 145 ELGDFVAYIAAGNILFEYVVSGASVARSWTSYFATLCNHDPGSFRIHVSSVAEDYSHLDPIAVIVSFFVCVGACLSMKGS 224 (584)
Q Consensus 145 ~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 224 (584)
.+||..||.+||.+++++....++....++++++.+.+. .+. .....+++++...+|++|+|..
T Consensus 85 ~~g~~~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~---------------~~~~~i~~~~~~~lN~~gv~~~ 148 (456)
T PRK10238 85 YWGSFAGFASGWNYWVLYVLVAMAELTAVGKYIQFWYPE-IPT---------------WVSAAVFFVVINAINLTNVKVF 148 (456)
T ss_pred HcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-CcH---------------HHHHHHHHHHHHHHHHHhHHHH
Confidence 999999999999999999999999998889998776542 111 1456666778899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc---cc--c----cCCC---CCCCCCchhHHHHHHHHHHHhhchhhhhhhhcccccC
Q 007943 225 SRFNSVATIVHIVILIFILITGLT---QA--N----TANY---AIFAPNGVRGILKASAVLFFAYVGFDGVATLGEEVKN 292 (584)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~i~~~~---~~--~----~~~~---~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~ 292 (584)
++++.+++.+|+..++++++.++. .. + ..+. .++.|+++.++..++..++|+|.|+|.+++++||+||
T Consensus 149 ~~~~~~~~~iki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~aeE~kn 228 (456)
T PRK10238 149 GEMEFWFAIIKVIAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEADN 228 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccccccCCCCCCccccHHHHHHHHHHHHHHhcCHHHHHHHHHhhcC
Confidence 999999999999887665553322 11 1 1111 1344667778888888899999999999999999999
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCC-CChHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 007943 293 PGRDIPIGLIGSMVITITVYCVLSATLCLMQPYSQIDV-DAPFTLAFQAVGMNWAKYIVALGALKGMTTVLLANVIGQAR 371 (584)
Q Consensus 293 p~r~~p~ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~~-~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR 371 (584)
|+|++|||+..++..+.++|+..........|.+++.. ++|+.++++..|+++...++++..+.+.+++.++.+++.||
T Consensus 229 P~r~iPrAi~~~~~~i~~~y~~~~~~~~~~~p~~~l~~~~sP~~~~~~~~g~~~~~~i~~~~i~~~~~s~~~~~~~~~sR 308 (456)
T PRK10238 229 PEQSIPKATNQVIYRILIFYIGSLAVLLSLMPWTRVTADTSPFVLIFHELGDTFVANALNIVVLTAALSVYNSCVYCNSR 308 (456)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHheecChhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998888777788887753 57999999999989889999999999999999999999999
Q ss_pred HHHHHHhcCCCchhhhcccCccccchHHHHHHHHHHHHHHHh------hcHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 007943 372 YFTHIGRTHMAPPFLAAINGKTGTPVNATVVMSLANSVVAFF------TSLDVLANLLSISTLFIFSLVALALLVRRYYV 445 (584)
Q Consensus 372 ~l~~~ardg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~i~~r~~~ 445 (584)
++|+|||||.+|++|+|+| |+++|++|++++.+++.+..++ ..++.+.++++.+.++.|.+++++.+++||++
T Consensus 309 ~l~a~ardg~lP~~f~kv~-~~~~P~~Ail~~~~i~~l~~l~~~~~~~~~f~~l~~~~~~~~~i~y~~~~~~~l~~r~~~ 387 (456)
T PRK10238 309 MLFGLAQQGNAPKALASVD-KRGVPVNTILVSALVTALCVLINYLAPESAFGLLMALVVSALVINWAMISLAHMKFRRAK 387 (456)
T ss_pred HHHHHHhCCCccHHHHhhC-cCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999 6799999999999988766554 35889999999999999999999999999875
Q ss_pred CC
Q 007943 446 AG 447 (584)
Q Consensus 446 ~~ 447 (584)
++
T Consensus 388 ~~ 389 (456)
T PRK10238 388 QE 389 (456)
T ss_pred Hh
Confidence 53
No 11
>PRK10580 proY putative proline-specific permease; Provisional
Probab=100.00 E-value=1.3e-52 Score=445.01 Aligned_cols=422 Identities=21% Similarity=0.390 Sum_probs=351.2
Q ss_pred cccccccccCHHHHHHHHHHHhhhhhhHHccHHhHhhccCchHHHHHHHHHHHHHHHHHHHHhhhhccccCCchhhhHHH
Q 007943 65 SEHEMKKNLNWWDLIWFGIGAVMGAGIFVLTGEAARNFAGPAVIISYLISGISALLSVLCYTEFSVELPVAGGSFAYLRV 144 (584)
Q Consensus 65 ~~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ii~~l~~~~~~~~~~el~~~~P~~Gg~y~~~~~ 144 (584)
+++++||+++.+|+++++++.++|+|+|..++..+.. +||..+++|++++++.++.+++++||++++|++||.|.|+++
T Consensus 3 ~~~~l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~-aG~~~~l~~~i~~i~~~~~a~~~aEl~s~~P~~Gg~y~y~~~ 81 (457)
T PRK10580 3 SKNKLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKM-AGPSVLLAYIIGGVAAYIIMRALGEMSVHNPAASSFSRYAQE 81 (457)
T ss_pred CCccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3467999999999999999999999999999998887 999999999999999999999999999999999999999999
Q ss_pred HhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcceeccccccccCcchhHHHHHHHHHHHHHhccchhH
Q 007943 145 ELGDFVAYIAAGNILFEYVVSGASVARSWTSYFATLCNHDPGSFRIHVSSVAEDYSHLDPIAVIVSFFVCVGACLSMKGS 224 (584)
Q Consensus 145 ~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 224 (584)
.+||.+||.+||.+++.+....+.....++.+...+++.. +. ....++++++...+|++|+|..
T Consensus 82 ~~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---------------~~~~~~~~~l~~~ln~~gv~~~ 145 (457)
T PRK10580 82 NLGPLAGYITGWTYCFEILIVAIADVTAFGIYMGVWFPTV-PH---------------WIWVLSVVLIICAVNLMSVKVF 145 (457)
T ss_pred HcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-Ch---------------HHHHHHHHHHHHHHHHccchhH
Confidence 9999999999999999998888887788888887665321 11 1445566777899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc-------cc-ccCCCC------CCCCCchhHHHHHHHHHHHhhchhhhhhhhcccc
Q 007943 225 SRFNSVATIVHIVILIFILITGLT-------QA-NTANYA------IFAPNGVRGILKASAVLFFAYVGFDGVATLGEEV 290 (584)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~i~~~~-------~~-~~~~~~------~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~ 290 (584)
++++.+++.+|+..++++++.++. .. ++.+.. ++.|+++.+++.++..++|+|.|+|.+++++||+
T Consensus 146 ~~~~~~~~~~~~~~l~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~~~~a~E~ 225 (457)
T PRK10580 146 GELEFWFSFFKVATIIIMIVAGIGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEA 225 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccccCCCCCCCCcchHHHHHHHHHHHHHHhCHHHHHHHHHHh
Confidence 999999999999887766554321 01 111111 2345667788899999999999999999999999
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCC-CChHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007943 291 KNPGRDIPIGLIGSMVITITVYCVLSATLCLMQPYSQIDV-DAPFTLAFQAVGMNWAKYIVALGALKGMTTVLLANVIGQ 369 (584)
Q Consensus 291 k~p~r~~p~ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~~-~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (584)
|||+|++|||++.+.+.+.++|+...+......|.+++.. ++|+..+++..|.++...++.+..+.+.+++.++++++.
T Consensus 226 knP~k~iPrAi~~~~~~~~~~y~~~~~~~~~~~p~~~i~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (457)
T PRK10580 226 KDPEKSIPRAINSVPMRILVFYVGTLFVIMSIYPWNQVGTNGSPFVLTFQHMGITFAASILNFVVLTASLSAINSDVFGV 305 (457)
T ss_pred cChhhHHHHHHHHHHHHHHHHHHHHHHHHheecccCCCCccCChHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988888888888764 468888888888888888888888899999999999999
Q ss_pred HHHHHHHHhcCCCchhhhcccCccccchHHHHHHHHHHHHHHHh------hcHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 007943 370 ARYFTHIGRTHMAPPFLAAINGKTGTPVNATVVMSLANSVVAFF------TSLDVLANLLSISTLFIFSLVALALLVRRY 443 (584)
Q Consensus 370 sR~l~~~ardg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~i~~r~ 443 (584)
||++++|||||.+|++|+|+| |+++|++|++++.+...+..++ ..++.+.++++...++.|.+.+++.+++|+
T Consensus 306 sR~~~~~ardg~lP~~~~kv~-~~~~P~~Ai~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~lr~ 384 (457)
T PRK10580 306 GRMLHGMAEQGSAPKIFSKTS-RRGIPWVTVLVMTTALLFAVYLNYIMPENVFLVIASLATFATVWVWIMILLSQIAFRR 384 (457)
T ss_pred HHHHHHHHhCCCcCHHHHhhC-CCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 6899999999997755443322 347789999999999999999999999998
Q ss_pred hcCCCCCccchhHHHHHHHHHHHHHhHhhhhccccCCCcchhhHHHHHHHHHHHHHhhhhhccCCCCccccccccHHHHH
Q 007943 444 YVAGETSECDQKKLIVFLALIISSSIASSAYWATSDNGWIGYIVTVPVWFLATMGLQLTVKEARKPKMWGVPLLPWLPSA 523 (584)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 523 (584)
++++ +..++++||.|..|+.+++
T Consensus 385 ~~~~---------------------------------------------------------~~~~~~~f~~~~~~~~~~~ 407 (457)
T PRK10580 385 RLPP---------------------------------------------------------EEVKALKFKVPGGVATTIG 407 (457)
T ss_pred HHHh---------------------------------------------------------cCCCCCCcccCCccHHHHH
Confidence 8543 2234467888888899998
Q ss_pred HHHHHHHHHhcC-----ChhhHHHHHHHHHHHHHHHHHHhhhc
Q 007943 524 CIAVNVFVMGSV-----DGQSFVRFMIWTFLLLVYYLFVALHA 561 (584)
Q Consensus 524 ~~~~~~~~~~~~-----~~~~~~~~~~~~~i~~~~y~~~~~~~ 561 (584)
+++.+.+++..+ ...+......+++++.+.|..++|++
T Consensus 408 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~y~~~~~~~ 450 (457)
T PRK10580 408 GLIFLVFIIGLIGYHPDTRISLYVGFAWIVLLLIGWMFKRRHD 450 (457)
T ss_pred HHHHHHHHHHHHHHCccHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 888888776543 22234566777888888887765433
No 12
>PRK10836 lysine transporter; Provisional
Probab=100.00 E-value=7.3e-53 Score=450.07 Aligned_cols=399 Identities=16% Similarity=0.242 Sum_probs=331.1
Q ss_pred cccccccccCHHHHHHHHHHHhhhhhhHHccHHhHhhccCch-HHHHHHHHHHHHHHHHHHHHhhhhccccCCchhhhHH
Q 007943 65 SEHEMKKNLNWWDLIWFGIGAVMGAGIFVLTGEAARNFAGPA-VIISYLISGISALLSVLCYTEFSVELPVAGGSFAYLR 143 (584)
Q Consensus 65 ~~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ii~~l~~~~~~~~~~el~~~~P~~Gg~y~~~~ 143 (584)
+++++||+++.+|++++++|.+||+|+|..++..+.. +||. .+++|+++++++++.+++++||++++|++||.|.|++
T Consensus 9 ~~~~l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~-aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~P~sGg~y~y~~ 87 (489)
T PRK10836 9 EAPGLRRELKARHLTMIAIGGSIGTGLFVASGATISQ-AGPGGALLSYMLIGLMVYFLMTSLGELAAYMPVSGSFATYGQ 87 (489)
T ss_pred CcccccccCcHHHHHHHHHhhhhhhhhhHhhhHHHHh-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
Confidence 4567999999999999999999999999999999987 9997 8999999999999999999999999999999999999
Q ss_pred HHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcceeccccccccCcchhHHHHHHHHHHHHHhccchh
Q 007943 144 VELGDFVAYIAAGNILFEYVVSGASVARSWTSYFATLCNHDPGSFRIHVSSVAEDYSHLDPIAVIVSFFVCVGACLSMKG 223 (584)
Q Consensus 144 ~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 223 (584)
+.+||.+||.+||.+|+.+....+........++..+++. .+ ......++++++..+|++|+|.
T Consensus 88 ~~~g~~~gf~~Gw~~~~~~~~~~a~~~~a~~~~~~~~~~~-~~---------------~~~~~~~~~~~~~~lN~~gv~~ 151 (489)
T PRK10836 88 NYVEEGFGFALGWNYWYNWAVTIAVDLVAAQLVMSWWFPD-TP---------------GWIWSALFLGVIFLLNYISVRG 151 (489)
T ss_pred HHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC-Cc---------------hHHHHHHHHHHHHHHHHHcchh
Confidence 9999999999999999988777665544444444433321 11 1134556667788999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc------cc----cCCCC---CCCCCchhHHHHHHHHHHHhhchhhhhhhhcccc
Q 007943 224 SSRFNSVATIVHIVILIFILITGLTQ------AN----TANYA---IFAPNGVRGILKASAVLFFAYVGFDGVATLGEEV 290 (584)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~i~~~~~------~~----~~~~~---~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~ 290 (584)
.+++|.+++..|+..++.+++.++.. .+ .+++. +..++++.+++.+....+|+|.|+|.+++++||+
T Consensus 152 ~~~~~~~~~~~ki~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~ 231 (489)
T PRK10836 152 FGEAEYWFSLIKVTTVIVFIIVGVLMIIGIFKGAEPAGWSNWTIGDAPFAGGFAAMIGVAMIVGFSFQGTELIGIAAGES 231 (489)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccCCCCCCCCcccHHHHHHHHHHHHHHHccHHHHHHHHHHh
Confidence 99999999999998876665544321 11 11221 1113456666666666789999999999999999
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCC---------CCChHHHHHHHhCchHHHHHHHHHHHHHHHHH
Q 007943 291 KNPGRDIPIGLIGSMVITITVYCVLSATLCLMQPYSQID---------VDAPFTLAFQAVGMNWAKYIVALGALKGMTTV 361 (584)
Q Consensus 291 k~p~r~~p~ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~---------~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 361 (584)
|||+||+|||++.++..+.++|++...++...+|.++.+ .++|+..+++..+.++...++.++.+++.+++
T Consensus 232 knP~r~iPrAi~~~~~~v~~~Yvl~~~~~~~~vp~~~~~~~~~~~~~~~~sp~~~~~~~~g~~~~~~ii~~~il~a~~~~ 311 (489)
T PRK10836 232 EDPAKNIPRAVRQVFWRILLFYVFAILIISLIIPYTDPSLLRNDVKDISVSPFTLVFQHAGLLSAAAVMNAVILTAVLSA 311 (489)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHheecCCCChhhhccccccccCCcHHHHHHHcCChhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988888765431 14688889998888888899999999999999
Q ss_pred HHHHHhhhHHHHHHHHhcCCCchhhhcccCccccchHHHHHHHHHHHHHHHhh------cHHHHHHHHHHHHHHHHHHHH
Q 007943 362 LLANVIGQARYFTHIGRTHMAPPFLAAINGKTGTPVNATVVMSLANSVVAFFT------SLDVLANLLSISTLFIFSLVA 435 (584)
Q Consensus 362 ~~~~~~~~sR~l~~~ardg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~~~~~ 435 (584)
.++.+++.||++|+|||||.+|++|+|+| |+++|++|++++.+++.+..+.. .++.+.++++.+.++.|++.+
T Consensus 312 ~n~~~~~~sR~l~a~Ardg~lP~~~~kv~-~~~~P~~All~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~y~~~~ 390 (489)
T PRK10836 312 GNSGMYASTRMLYTLACDGKAPRIFAKLS-RGGVPRNALYATTVIAGLCFLTSMFGNQTVYLWLLNTSGMTGFIAWLGIA 390 (489)
T ss_pred HHHHHHHHHHHHHHHHcCCCcCHHHHhhC-CCCCcHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 67999999999999887666542 367788999999999999999
Q ss_pred HHHHhhhhhcCCCCCccchhHHHHHHHHHHHHHhHhhhhccccCCCcchhhHHHHHHHHHHHHHhhhhhccC-CCCcccc
Q 007943 436 LALLVRRYYVAGETSECDQKKLIVFLALIISSSIASSAYWATSDNGWIGYIVTVPVWFLATMGLQLTVKEAR-KPKMWGV 514 (584)
Q Consensus 436 ~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 514 (584)
++.+++||+.+++ +++ +++|||.
T Consensus 391 ~a~l~~R~~~~~~--------------------------------------------------------~~~~~~~p~~~ 414 (489)
T PRK10836 391 ISHYRFRRGYVLQ--------------------------------------------------------GHDLNDLPYRS 414 (489)
T ss_pred HHHHHHHHHHHhc--------------------------------------------------------CCCcCCCCCcC
Confidence 9999988864321 222 2468999
Q ss_pred ccccHHHHHHHHHHHHHHhcCCh
Q 007943 515 PLLPWLPSACIAVNVFVMGSVDG 537 (584)
Q Consensus 515 ~~~p~~~~~~~~~~~~~~~~~~~ 537 (584)
|+.|+.|+++++.+++++....+
T Consensus 415 p~~p~~~~~~~~~~~~~~~~~~~ 437 (489)
T PRK10836 415 GFFPLGPIFAFVLCLIITLGQNY 437 (489)
T ss_pred CCccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998886544
No 13
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=100.00 E-value=6e-53 Score=446.73 Aligned_cols=423 Identities=20% Similarity=0.331 Sum_probs=348.5
Q ss_pred cccccccccCHHHHHHHHHHHhhhhhhHHccHHhHhhccCch-HHHHHHHHHHHHHHHHHHHHhhhhccccCCchhhhHH
Q 007943 65 SEHEMKKNLNWWDLIWFGIGAVMGAGIFVLTGEAARNFAGPA-VIISYLISGISALLSVLCYTEFSVELPVAGGSFAYLR 143 (584)
Q Consensus 65 ~~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ii~~l~~~~~~~~~~el~~~~P~~Gg~y~~~~ 143 (584)
++++++|+++.++.++++++.++|+|+|..++......+++. .+++|+++++++++.+++++|+++++|++||.|.|++
T Consensus 2 ~~~~L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P~~GG~y~y~~ 81 (445)
T PRK11357 2 GSQELQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPENGADYVYLK 81 (445)
T ss_pred CcccccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCceeeHH
Confidence 356799999999999999999999999999998776645565 7899999999999999999999999999999999999
Q ss_pred HHhchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHccCCCCCcceeccccccccCcchhHHHHHHHHHHHHHhccch
Q 007943 144 VELGDFVAYIAAGN-ILFEYVVSGASVARSWTSYFATLCNHDPGSFRIHVSSVAEDYSHLDPIAVIVSFFVCVGACLSMK 222 (584)
Q Consensus 144 ~~~g~~~g~~~g~~-~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 222 (584)
+.+||.+||..||. ++.......+..+..+++|+....+... + ....++++++.+++.+|++|+|
T Consensus 82 ~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~--~------------~~~~~~~~~~~~~~~ln~~gv~ 147 (445)
T PRK11357 82 NAGSRPLAFLSGWASFWANDAPSLSIMALAIVSNLGFLTPIDP--L------------LGKFIAAGLIIAFMLLHLRSVE 147 (445)
T ss_pred HhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch--H------------HHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999997 4455566677788888888876543210 0 1225566667778899999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCC-----CCCc-hhHHHHHHHHHHHhhchhhhhhhhcccccCCCCC
Q 007943 223 GSSRFNSVATIVHIVILIFILITGLTQANTANYAIF-----APNG-VRGILKASAVLFFAYVGFDGVATLGEEVKNPGRD 296 (584)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-----~~~g-~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~r~ 296 (584)
..+++|.+++.++++.++++++.++...+.+++.+. ...+ +.+++.++..++|+|.|+|.+++++||+|||+||
T Consensus 148 ~~~~v~~~~~~~~~~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~ 227 (445)
T PRK11357 148 GGAAFQTLITIAKIIPFTIVIGLGIFWFKAENFAAPTTTAIGATGSFMALLAGISATSWSYTGMASICYMTGEIKNPGKT 227 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCcccccccchHHHHHHHHHHHHHHHhhHHHHHhhHHHhcCcccc
Confidence 999999999999999887777666543333332211 1122 4567888899999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCC-CChHHHHHHHh--CchHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 007943 297 IPIGLIGSMVITITVYCVLSATLCLMQPYSQIDV-DAPFTLAFQAV--GMNWAKYIVALGALKGMTTVLLANVIGQARYF 373 (584)
Q Consensus 297 ~p~ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~~-~~p~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l 373 (584)
+|||+..++.+++++|++..++.....|.+++.. ++|+.++++.. .+++...++.+..+++.+++.++.+.+.+|++
T Consensus 228 iP~Ai~~~~~i~~~~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~ 307 (445)
T PRK11357 228 MPRALIGSCLLVLVLYTLLALVISGLMPFDKLANSETPISDALTWIPALGSTAGIFVAITAMIVILGSLSSCVMYQPRLE 307 (445)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhcCCchHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 9999999999999999999999988888887754 56888888753 34556667777788889999999999999999
Q ss_pred HHHHhcCCCchhhhcccCccccchHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCccc
Q 007943 374 THIGRTHMAPPFLAAINGKTGTPVNATVVMSLANSVVAFFTSLDVLANLLSISTLFIFSLVALALLVRRYYVAGETSECD 453 (584)
Q Consensus 374 ~~~ardg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~~~~~ 453 (584)
++|+|||.+|++|+|+|||+|+|++|++++++++.++.+..+++.+.++.+....+.|.+...+++++|+++
T Consensus 308 ~a~ardg~lp~~~~~v~~~~~tP~~a~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~i~lr~~~-------- 379 (445)
T PRK11357 308 YAMAKDNLFFKCFGHVHPKYNTPDVSIILQGALGIFFIFVSDLTSLLGYFTLVMCFKNTLTFGSIIWCRKRD-------- 379 (445)
T ss_pred HHHHhcCCchHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHheeecCC--------
Confidence 999999999999999999999999999999999988888889999999999889999999988888777542
Q ss_pred hhHHHHHHHHHHHHHhHhhhhccccCCCcchhhHHHHHHHHHHHHHhhhhhccCCCCccccccccHHHHHHHHHHHHHHh
Q 007943 454 QKKLIVFLALIISSSIASSAYWATSDNGWIGYIVTVPVWFLATMGLQLTVKEARKPKMWGVPLLPWLPSACIAVNVFVMG 533 (584)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 533 (584)
+.+++||.|..|+.|+++++.+++++.
T Consensus 380 -----------------------------------------------------~~~~~~k~p~~~~~~~~~~~~~~~~~~ 406 (445)
T PRK11357 380 -----------------------------------------------------DYKPLWRTPAFGLMTTLAIASSLILVA 406 (445)
T ss_pred -----------------------------------------------------CCCCCcccCCchHHHHHHHHHHHHHHH
Confidence 123568999999999999999988864
Q ss_pred c----CChhhHHHHHHHHHHHHHHHHHHhhhcc
Q 007943 534 S----VDGQSFVRFMIWTFLLLVYYLFVALHAS 562 (584)
Q Consensus 534 ~----~~~~~~~~~~~~~~i~~~~y~~~~~~~~ 562 (584)
. ....++.....++++|+.+|+.+++|++
T Consensus 407 ~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~ 439 (445)
T PRK11357 407 STFVWAPIPGLICAVIVIATGLPAYAFWAKRSR 439 (445)
T ss_pred HHHHcCcHHHHHHHHHHHHHhhhHHhheechhh
Confidence 3 2333445567788889998877666544
No 14
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=100.00 E-value=2.5e-52 Score=442.81 Aligned_cols=364 Identities=20% Similarity=0.307 Sum_probs=315.8
Q ss_pred ccccccccCHHHHHHHHHHHhhhhhhHHccHHhHhhccCchHHHHHHHHHHHHHHHHHHHHhhhhccccCCchhhhHHHH
Q 007943 66 EHEMKKNLNWWDLIWFGIGAVMGAGIFVLTGEAARNFAGPAVIISYLISGISALLSVLCYTEFSVELPVAGGSFAYLRVE 145 (584)
Q Consensus 66 ~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ii~~l~~~~~~~~~~el~~~~P~~Gg~y~~~~~~ 145 (584)
+.++||+++.+|+.+++++.++|+|+|..++..+.. +||..+++|++++++.++.+++++||++++|++||.|.|+++.
T Consensus 7 ~~~~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~-~G~~~~i~~~i~~v~~~~~a~~~aEl~s~~P~~Gg~~~~~~~~ 85 (452)
T TIGR01773 7 GLKLPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIAS-AGPAALLAYLLAGLLVVFIMRMLGEMAVANPDTGSFSTYADDA 85 (452)
T ss_pred hHhHhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHh-cCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 456899999999999999999999999999999987 8999888999999999999999999999999999999999999
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcceeccccccccCcchhHHHHHHHHHHHHHhccchhHH
Q 007943 146 LGDFVAYIAAGNILFEYVVSGASVARSWTSYFATLCNHDPGSFRIHVSSVAEDYSHLDPIAVIVSFFVCVGACLSMKGSS 225 (584)
Q Consensus 146 ~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 225 (584)
+||.+||.+||.+|++++...++++...+.++..+++.. + ...+.++++++.+.+|++|+|..+
T Consensus 86 ~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~---------------~~~~~~~~~~~~~~~n~~gv~~~~ 149 (452)
T TIGR01773 86 IGRWAGFTIGWLYWWFWVLVIPLEAIAAAGILQYWFPDI-P---------------LWLFSLILTIVLTLTNLYSVKSYG 149 (452)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcC-c---------------HHHHHHHHHHHHHHHHHHhcchhh
Confidence 999999999999999999999999998888888765321 1 125677778888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcc---c----cc---CCC---CCCCCCchhHHHHHHHHHHHhhchhhhhhhhcccccC
Q 007943 226 RFNSVATIVHIVILIFILITGLTQ---A----NT---ANY---AIFAPNGVRGILKASAVLFFAYVGFDGVATLGEEVKN 292 (584)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~i~~~~~---~----~~---~~~---~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~ 292 (584)
+++.+.+.+|++.++.+++.++.. . +. .++ .++.|+++.+++.++..++|+|.|+|.+++++||+||
T Consensus 150 ~~~~~~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~a~E~k~ 229 (452)
T TIGR01773 150 EFEFWFALIKVIAIIAFIILGAVAIFGFAPGSEVSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAAAESSN 229 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhccHHHHhHHHHhhcC
Confidence 999999999998887666654321 1 11 111 1244567778999999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCC--CCChHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 007943 293 PGRDIPIGLIGSMVITITVYCVLSATLCLMQPYSQID--VDAPFTLAFQAVGMNWAKYIVALGALKGMTTVLLANVIGQA 370 (584)
Q Consensus 293 p~r~~p~ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~--~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~s 370 (584)
|+|++|||+..+...++++|++.........|.++.+ +++|+..+.+..|+++...++.++.+++.+++.++.+++.|
T Consensus 230 P~r~iPrAi~~~~~~~~~~y~l~~~~~~~~~p~~~~~~~~~~p~~~~~~~~g~~~~~~ii~~~~~~~~~~~~~~~~~~~s 309 (452)
T TIGR01773 230 PIKSITRATNSVIWRIIVFYLGSIFIVVALLPWNSPNLLEVGSYVAVLELLGIPHAKLIMDFVVLTAVLSCLNSALYTTS 309 (452)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHeeEeCCCCcccccCCcHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999888877777766543 23488888888898988999999999999999999999999
Q ss_pred HHHHHHHhcCCCchhhhcccCccccchHHHHHHHHHHHHHHHh------hcHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 007943 371 RYFTHIGRTHMAPPFLAAINGKTGTPVNATVVMSLANSVVAFF------TSLDVLANLLSISTLFIFSLVALALLVRRYY 444 (584)
Q Consensus 371 R~l~~~ardg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~i~~r~~ 444 (584)
|++++|||||.+|++|+|+| |+++|++|++++.+++.+..+. ..++.+.++.+...++.|++.+++.+++|++
T Consensus 310 R~~~a~ardg~lP~~~~~v~-~~~~P~~Ail~~~~~~~~~~l~~~~~~~~~f~~l~~~~~~~~~~~y~~~~~~~i~~r~~ 388 (452)
T TIGR01773 310 RMLYSLAERGDAPRVFMKLN-KKGVPVQAVLASTFFSFLTVVVNYFAPDKVFLFLVNSSGAIALLVYLVIAVSQLRMRKK 388 (452)
T ss_pred HHHHHHHhCCCcCHHHHhhC-CCCCcHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999 7899999999999988765544 2367788888888899999999999998887
Q ss_pred cCC
Q 007943 445 VAG 447 (584)
Q Consensus 445 ~~~ 447 (584)
.|+
T Consensus 389 ~~~ 391 (452)
T TIGR01773 389 LKA 391 (452)
T ss_pred HHh
Confidence 554
No 15
>PRK10655 potE putrescine transporter; Provisional
Probab=100.00 E-value=1.6e-52 Score=442.81 Aligned_cols=419 Identities=18% Similarity=0.267 Sum_probs=346.5
Q ss_pred cccccCHHHHHHHHHHHhhhhhhHHccHHhHhhccCchHHHHHHHHHHHHHHHHHHHHhhhhccccCCchhhhHHHHhch
Q 007943 69 MKKNLNWWDLIWFGIGAVMGAGIFVLTGEAARNFAGPAVIISYLISGISALLSVLCYTEFSVELPVAGGSFAYLRVELGD 148 (584)
Q Consensus 69 l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ii~~l~~~~~~~~~~el~~~~P~~Gg~y~~~~~~~g~ 148 (584)
.+|+++.++.+++++++++|+|+|..++... . +|+..+++|++++++.++.+++++|+++++|++||.|.|+++.+||
T Consensus 4 ~~~~l~~~~~~~l~vg~~iGsGif~~p~~~~-~-~G~~~~~~w~i~~~~~~~~a~~~aeL~~~~P~~GG~y~y~~~~~G~ 81 (438)
T PRK10655 4 KSNKMGVVQLTILTAVNMMGSGIIMLPTKLA-Q-VGTISILSWLVTAVGSMALAYAFAKCGMFSRKSGGMGGYAEYAFGK 81 (438)
T ss_pred ccCcccHHHHHHHHHHhhhhhHHHHhHHHHH-H-hhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCchHHHHHHHcCc
Confidence 4789999999999999999999999988754 4 7888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcceeccccccccCcchhHHHHHHHHHHHHHhccchhHHHHH
Q 007943 149 FVAYIAAGNILFEYVVSGASVARSWTSYFATLCNHDPGSFRIHVSSVAEDYSHLDPIAVIVSFFVCVGACLSMKGSSRFN 228 (584)
Q Consensus 149 ~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 228 (584)
..||++||.+|+.+.......+.....|+...++...+.+. ..++.++++++.+.+|++|+|..++++
T Consensus 82 ~~gf~~gw~~~~~~~~~~~~~a~~~~~y~~~~~~~~~~~~~------------~~~~~~~~l~~~~~ln~~g~~~~~~i~ 149 (438)
T PRK10655 82 SGNFMANYTYGVSLLIANVAIAISAVGYGTELFGATLSPVQ------------ICLATIGVLWLCTVANFGGARITGQIS 149 (438)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHH------------HHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 99999999999999887777777778888777653221111 225566677888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccCCCC-CCCCCc---hhHHHHHHHHHHHhhchhhhhhhhcccccCCCCCchhHHHHH
Q 007943 229 SVATIVHIVILIFILITGLTQANTANYA-IFAPNG---VRGILKASAVLFFAYVGFDGVATLGEEVKNPGRDIPIGLIGS 304 (584)
Q Consensus 229 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~g---~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~r~~p~ai~~~ 304 (584)
.+....+++.++++.+.++...+++++. ++.+.+ +.++..++..++|+|.|+|.+++++||+|||+||+|||++.+
T Consensus 150 ~i~~~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iPrAi~~~ 229 (438)
T PRK10655 150 SVTVWGVIIPVVGLSIIGWFWFSPSLYVAAWNPHHLPFFSAVGSSIAMTLWAFLGLESACANSDAVENPERNVPIAVLGG 229 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcccccCCcCccCCchHHHHHHHHHHHHHHHhhhhhhhhhHHHhhCccccccHHHHHH
Confidence 9999999888877777665554444442 333433 356777888899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCC-CCChHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCc
Q 007943 305 MVITITVYCVLSATLCLMQPYSQID-VDAPFTLAFQAVGMNWAKYIVALGALKGMTTVLLANVIGQARYFTHIGRTHMAP 383 (584)
Q Consensus 305 ~~~~~i~y~l~~~~~~~~~~~~~~~-~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~ardg~lP 383 (584)
..+++++|++...+.....|++++. +++|+.++++...+++...++.+..+++.+++.+++..+.+|++++|+|||.+|
T Consensus 230 ~~~~~~~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~g~~~~~~~~~~~~is~~~~~~~~~~~~sR~~~~~a~dg~lP 309 (438)
T PRK10655 230 TLGAAVIYIVSTNVIAGIVPNMELANSTAPFGLAFAQMFNPTVGKIVMALMVMSCCGSLLGWQFTIAQVFKSSADEGYFP 309 (438)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHhhccchHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchh
Confidence 9999999999988888888887764 467888888877778888888888899999999999999999999999999999
Q ss_pred hhhhcccCccccchHHHHHHHHHHHHHHHh-------hcHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCccchhH
Q 007943 384 PFLAAINGKTGTPVNATVVMSLANSVVAFF-------TSLDVLANLLSISTLFIFSLVALALLVRRYYVAGETSECDQKK 456 (584)
Q Consensus 384 ~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~~~~~~~~ 456 (584)
++|+|+| |+++|++|++++.+++.++.+. ..++.+.++.+...++.|.+.+++.+++|+|+++.+|
T Consensus 310 ~~~~~v~-~~~tP~~all~~~~i~~~l~l~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~~~~~lr~~~~~~~~------ 382 (438)
T PRK10655 310 KIFSRVT-KVDAPVQGMLIIVVIQSLLSLMTISPSLNSQFNVLVNLAVVTNIIPYILSMAALVIIQKVANVPPS------ 382 (438)
T ss_pred HHHHhhC-cCCCCHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcc------
Confidence 9999999 6799999999999887665543 3588999999999999999999999999988654332
Q ss_pred HHHHHHHHHHHHhHhhhhccccCCCcchhhHHHHHHHHHHHHHhhhhhccCCCCccccccccHHHHHHHHHHHHHHhcCC
Q 007943 457 LIVFLALIISSSIASSAYWATSDNGWIGYIVTVPVWFLATMGLQLTVKEARKPKMWGVPLLPWLPSACIAVNVFVMGSVD 536 (584)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 536 (584)
+||.| ++++.++.+.+++.+....
T Consensus 383 ------------------------------------------------------~~~~~--~~~~~~~~~~~~~~~~~~~ 406 (438)
T PRK10655 383 ------------------------------------------------------KAKVA--NFIAFVGALYSFYALYSSG 406 (438)
T ss_pred ------------------------------------------------------hhHHH--HHHHHHHHHHHHHHHHHhh
Confidence 33332 3566666666666665555
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhcccc
Q 007943 537 GQSFVRFMIWTFLLLVYYLFVALHASYD 564 (584)
Q Consensus 537 ~~~~~~~~~~~~i~~~~y~~~~~~~~~~ 564 (584)
..+......++++|..+|..+.||+..+
T Consensus 407 ~~~~~~~~~~~~~g~~~y~~~~~~~~~~ 434 (438)
T PRK10655 407 EEAMLYGSIVTFLGWTLYGLISPRFELK 434 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 5455666788888999887766655443
No 16
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=100.00 E-value=3.2e-52 Score=440.86 Aligned_cols=420 Identities=20% Similarity=0.285 Sum_probs=345.0
Q ss_pred ccccccccCHHHHHHHHHHHhhhhhhHHccHHhHhhccCchHHHHHHHHHHHHHHHHHHHHhhhhccccCCchhhhHHHH
Q 007943 66 EHEMKKNLNWWDLIWFGIGAVMGAGIFVLTGEAARNFAGPAVIISYLISGISALLSVLCYTEFSVELPVAGGSFAYLRVE 145 (584)
Q Consensus 66 ~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ii~~l~~~~~~~~~~el~~~~P~~Gg~y~~~~~~ 145 (584)
+.+++|++|.+++++++++.++|+|+|..++.... .|+..+++|+++++..++.+++++||++++|++||.|+|+++.
T Consensus 3 ~~~~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~--~g~~~~~~~~i~~~~~l~~al~~aEL~s~~P~aGG~y~~~~~~ 80 (445)
T PRK10644 3 SDADAHKVGLIPVTLMVAGNIMGSGVFLLPANLAS--TGGIAIYGWLVTIIGALGLSMVYAKMSSLDPSPGGSYAYARRC 80 (445)
T ss_pred CCccCCCcCHHHHHHHHHhhHhhhHHHhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhHHHHHH
Confidence 34578999999999999999999999999988655 3555789999999999999999999999999999999999999
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcceeccccccccCcchhHHHHHHHHHHHHHhccchhHH
Q 007943 146 LGDFVAYIAAGNILFEYVVSGASVARSWTSYFATLCNHDPGSFRIHVSSVAEDYSHLDPIAVIVSFFVCVGACLSMKGSS 225 (584)
Q Consensus 146 ~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 225 (584)
+||.+||.+||.+|+.+.............|....++.....+ ...++.++++++++.+|++|+|..+
T Consensus 81 ~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~ln~~gvk~~~ 148 (445)
T PRK10644 81 FGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDPL------------VLTITCVVVLWIFVLLNIVGPKMIT 148 (445)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcH------------HHHHHHHHHHHHHHHHHHhchHHHH
Confidence 9999999999999999887777766666677766654321111 1225567777889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccCCCCC-CCC---CchhHHHHHHHHHHHhhchhhhhhhhcccccCCCCCchhHH
Q 007943 226 RFNSVATIVHIVILIFILITGLTQANTANYAI-FAP---NGVRGILKASAVLFFAYVGFDGVATLGEEVKNPGRDIPIGL 301 (584)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~---~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~r~~p~ai 301 (584)
++|++++.++++.++.+.+.++...+.+++.+ +.+ +++.++..++..++|+|.|+|.+++++||+|||+|++|||+
T Consensus 149 ~i~~i~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iPrai 228 (445)
T PRK10644 149 RVQAVATVLALIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIAT 228 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCchhccCCccccccchHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCcccchhHHH
Confidence 99999999998888777776655444333321 222 23556777888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCC-CCChHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcC
Q 007943 302 IGSMVITITVYCVLSATLCLMQPYSQID-VDAPFTLAFQAVGMNWAKYIVALGALKGMTTVLLANVIGQARYFTHIGRTH 380 (584)
Q Consensus 302 ~~~~~~~~i~y~l~~~~~~~~~~~~~~~-~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~ardg 380 (584)
+.++.+++++|++..++.....|++++. .++|+.++++...+++...++.+..+++.+++.++.+...+|++++|||||
T Consensus 229 ~~s~~i~~v~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~g~~~~~~v~~~~~~s~~~~~~~~~~~~sr~~~a~ardg 308 (445)
T PRK10644 229 IGGVLIAAVCYVLSSTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDG 308 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHhcCCChHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999888887764 467999988877778777888888888999999999999999999999999
Q ss_pred CCchhhhcccCccccchHHHHHHHHHHHHHHHh-------hcHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCccc
Q 007943 381 MAPPFLAAINGKTGTPVNATVVMSLANSVVAFF-------TSLDVLANLLSISTLFIFSLVALALLVRRYYVAGETSECD 453 (584)
Q Consensus 381 ~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~~~~~ 453 (584)
.+|++|+|+| |+++|++|++++++++.++.+. ..++.+.++++.+.++.|++.+++.+++|+|+++.
T Consensus 309 ~lP~~~~~v~-~~~tP~~Ai~~~~~i~~l~~l~~~~~~~~~~~~~l~~~~~~~~li~y~~~~~~~~~l~~~~~~~----- 382 (445)
T PRK10644 309 LFPPIFARVN-KAGTPVAGLLIVGVLMTIFQLSSISPNASKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHFGK----- 382 (445)
T ss_pred CccHHHHhhC-cCCCCHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc-----
Confidence 9999999999 5799999999999998776554 25888999999999999999999999988774321
Q ss_pred hhHHHHHHHHHHHHHhHhhhhccccCCCcchhhHHHHHHHHHHHHHhhhhhccCCCCccccccccHHHHHHHHHHHHHHh
Q 007943 454 QKKLIVFLALIISSSIASSAYWATSDNGWIGYIVTVPVWFLATMGLQLTVKEARKPKMWGVPLLPWLPSACIAVNVFVMG 533 (584)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 533 (584)
+.|..|++|+++++.+++++.
T Consensus 383 -----------------------------------------------------------~~p~~~~~~~~~~~~~~~~~~ 403 (445)
T PRK10644 383 -----------------------------------------------------------ARPAYLAVTLIAFVYCIWAVV 403 (445)
T ss_pred -----------------------------------------------------------cccchhHHHHHHHHHHHHHHH
Confidence 113457788899999988888
Q ss_pred cCChhhHHHHHHHHHHHHHHH-HHHhhhcccc
Q 007943 534 SVDGQSFVRFMIWTFLLLVYY-LFVALHASYD 564 (584)
Q Consensus 534 ~~~~~~~~~~~~~~~i~~~~y-~~~~~~~~~~ 564 (584)
...+.+......+++++...| +.++|||+++
T Consensus 404 ~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~ 435 (445)
T PRK10644 404 GSGAKEVMWSFVTLMVITAFYALNYNRLHKNP 435 (445)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 777666656566666666655 4455555544
No 17
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=100.00 E-value=5e-52 Score=441.29 Aligned_cols=364 Identities=19% Similarity=0.324 Sum_probs=315.7
Q ss_pred ccccccccCHHHHHHHHHHHhhhhhhHHccHHhHhhccCchHHHHHHHHHHHHHHHHHHHHhhhhccccCCchhhhHHHH
Q 007943 66 EHEMKKNLNWWDLIWFGIGAVMGAGIFVLTGEAARNFAGPAVIISYLISGISALLSVLCYTEFSVELPVAGGSFAYLRVE 145 (584)
Q Consensus 66 ~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ii~~l~~~~~~~~~~el~~~~P~~Gg~y~~~~~~ 145 (584)
++++||+++.++..++++|.+||+|+|..++..+.. +||..+++|++++++.++.+++++|+++..|..|+.|.|+++.
T Consensus 15 ~~~l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~-aGp~~i~~~~i~~i~~~~~~~s~aEl~s~~~~~~~~~~ya~~~ 93 (469)
T PRK11049 15 EQSLRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISL-AGPSIIFVYMIIGFMLFFVMRAMGELLLSNLEYKSFSDFASDL 93 (469)
T ss_pred chhhhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhh-cCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 456999999999999999999999999999999987 8998899999999999999999999999999999999999999
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcceeccccccccCcchhHHHHHHHHHHHHHhccchhHH
Q 007943 146 LGDFVAYIAAGNILFEYVVSGASVARSWTSYFATLCNHDPGSFRIHVSSVAEDYSHLDPIAVIVSFFVCVGACLSMKGSS 225 (584)
Q Consensus 146 ~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 225 (584)
+||.+||++||.+++.+....++++...+.|+..+++.. + ...++.+++++++.+|++|+|..+
T Consensus 94 ~g~~~gf~~gW~~~~~~~~~~~a~~~a~~~~~~~~~p~~-~---------------~~~~~~~~~~~~~~iN~~g~~~~~ 157 (469)
T PRK11049 94 LGPWAGYFTGWTYWFCWVVTGIADVVAITAYAQFWFPDL-S---------------DWVASLAVVLLLLSLNLATVKMFG 157 (469)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-c---------------HHHHHHHHHHHHHHHHHHhHHHHH
Confidence 999999999999999998887778888888887665421 1 114455677788999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccc-----cc----CCC------CCCCCCchhHHHHHHHHHHHhhchhhhhhhhcccc
Q 007943 226 RFNSVATIVHIVILIFILITGLTQA-----NT----ANY------AIFAPNGVRGILKASAVLFFAYVGFDGVATLGEEV 290 (584)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~i~~~~~~-----~~----~~~------~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~ 290 (584)
++|.+.+.+|+..++.+++.++... ++ .++ .++.|+++.+++.++...+|+|.|+|.+++++||+
T Consensus 158 ~i~~~~~~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~~~~a~E~ 237 (469)
T PRK11049 158 EMEFWFAMIKIVAIVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVFAFVGIELVGTTAAET 237 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhcHHHHHHHHHHh
Confidence 9999999999998888777765421 01 111 12445677789999999999999999999999999
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCC-CChHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007943 291 KNPGRDIPIGLIGSMVITITVYCVLSATLCLMQPYSQIDV-DAPFTLAFQAVGMNWAKYIVALGALKGMTTVLLANVIGQ 369 (584)
Q Consensus 291 k~p~r~~p~ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~~-~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (584)
|||+|++||++..+.+.+.++|++...+.....|.+++.. ++|+.+.++..++++...++.+..+++.+++.++.+++.
T Consensus 238 knP~r~iPrai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~s~~~~~~~~~~~~ 317 (469)
T PRK11049 238 KDPEKSLPRAINSIPIRIIMFYVFALIVIMSVTPWSSVVPDKSPFVELFVLVGLPAAASVINFVVLTSAASSANSGVFST 317 (469)
T ss_pred cCHhhHHHHHHHHHHHHHHHHHHHHHHHHeeecCccccCccCCcHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998888899999999999888888888754 579999988889899999999999999999999999999
Q ss_pred HHHHHHHHhcCCCchhhhcccCccccchHHHHHHHHHHHHHH---Hh-----hcHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007943 370 ARYFTHIGRTHMAPPFLAAINGKTGTPVNATVVMSLANSVVA---FF-----TSLDVLANLLSISTLFIFSLVALALLVR 441 (584)
Q Consensus 370 sR~l~~~ardg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~---~~-----~~~~~l~~~~~~~~~~~~~~~~~~~i~~ 441 (584)
||++++|||||.+|++|+|+| |+|+|++|++++.++..+.. .. ..++.+.++++....+.|++.+++++++
T Consensus 318 sR~l~a~ardg~lP~~~~kv~-~~~tP~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~a~~~l 396 (469)
T PRK11049 318 SRMLFGLAQEGVAPKAFAKLS-KRAVPAKGLTFSCICLLGGVVLLYVNPSVIGAFTLVTTVSAILFMFVWTIILCSYLVY 396 (469)
T ss_pred HHHHHHHHhCCCCCHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 56999999999887654311 11 2578888999999999999999999999
Q ss_pred hhhcCC
Q 007943 442 RYYVAG 447 (584)
Q Consensus 442 r~~~~~ 447 (584)
|+++|+
T Consensus 397 r~~~p~ 402 (469)
T PRK11049 397 RKQRPH 402 (469)
T ss_pred HHhhhh
Confidence 988664
No 18
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-52 Score=422.93 Aligned_cols=458 Identities=16% Similarity=0.222 Sum_probs=379.4
Q ss_pred hcCCCChHHHHHhhhccccccccccCHHHHHHHHHHHhhh-hhhHHccHHhHhhccCchHHHHHHHHHHHHHHHHHHHHh
Q 007943 49 LTRSNDNLELHQMRARSEHEMKKNLNWWDLIWFGIGAVMG-AGIFVLTGEAARNFAGPAVIISYLISGISALLSVLCYTE 127 (584)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~l~r~l~~~~~~~~~~~~~ig-~gi~~~~~~~~~~~~G~~~~~~~ii~~l~~~~~~~~~~e 127 (584)
.++++|++++.+++ +++|+||+++.|+.+.++++.+-- .|+-.+....+..+|+|.++|+|++++.+.++.+.+++|
T Consensus 28 ~~~~~d~~~L~~lg--Ykqef~R~fs~~s~fg~sFs~~g~~~~i~tsm~~gl~~gG~~~~vwgwlIa~~~~i~va~slaE 105 (550)
T KOG1289|consen 28 PEDDSDEELLAELG--YKQELKREFSLFSIFGISFSLMGLLPGIATSMAYGLGSGGPPTLVWGWLIAGFFSICVALSLAE 105 (550)
T ss_pred ccccCCHHHHHHcC--CchhhhhhhhHHHHHHHHHHHhcchhhhhhheeeccccCChHHHHHHHHHHHHHHHHHHhHHHH
Confidence 34556777888888 999999999999999999997721 355555555555424455999999999999999999999
Q ss_pred hhhccccCCchhhhHHH----HhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcceeccccccccCcch
Q 007943 128 FSVELPVAGGSFAYLRV----ELGDFVAYIAAGNILFEYVVSGASVARSWTSYFATLCNHDPGSFRIHVSSVAEDYSHLD 203 (584)
Q Consensus 128 l~~~~P~~Gg~y~~~~~----~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (584)
+++++|++||.|.|+.. .+||..+|++||...+++....++..++.++.+.......++.+.. ++ .+..
T Consensus 106 l~Sa~PtsGgLy~waa~lap~k~~~~~sw~~Gw~~~~g~~~~~aSi~~S~A~~i~~~v~l~np~y~~------~~-~~~~ 178 (550)
T KOG1289|consen 106 LCSAMPTSGGLYFWAAVLAPPKYGPFASWVTGWLNYLGQATGVASITYSLAQLILGAVSLTNPNYEP------TN-YHQF 178 (550)
T ss_pred HHhhCCCCCcHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhhcCCCCcc------cc-eEee
Confidence 99999999999999874 7888999999999999999999999999999999887766555422 22 3355
Q ss_pred hHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHhhcccc--------------cCCCCCCCCCchhHHHHH
Q 007943 204 PIAVIVSFFVCVGACLSMKGSSRFNSVATIVHIVILIFILITGLTQAN--------------TANYAIFAPNGVRGILKA 269 (584)
Q Consensus 204 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--------------~~~~~~~~~~g~~~~~~~ 269 (584)
.+..++.++..++|+.+.|...+++.+.....++.+++.++......+ .+|.++|.++|| +++.+
T Consensus 179 ~v~~ai~~v~~lln~~p~r~l~~I~~~~~~~~ll~~~i~~I~lla~~~~k~gFns~~~iF~~f~N~sgw~~~G~-afil~ 257 (550)
T KOG1289|consen 179 GVFEAILFVHGLLNSLPTRVLARINSVSVYLNLLFLVILMITLLAASSKKTGFNSGSFIFGKFNNYSGWKNNGW-AFILG 257 (550)
T ss_pred hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCceeeecccccCCCCcchH-HHHHh
Confidence 888889999999999999999999999999999998888877665322 223445655665 58888
Q ss_pred HHHHHHhhchhhhhhhhcccccCCCCCchhHHHHHHHHHHHHHHHHHHHHHhccCCCCC---CC--CChHHHHHHHhCch
Q 007943 270 SAVLFFAYVGFDGVATLGEEVKNPGRDIPIGLIGSMVITITVYCVLSATLCLMQPYSQI---DV--DAPFTLAFQAVGMN 344 (584)
Q Consensus 270 ~~~~~~~~~G~e~~~~~a~E~k~p~r~~p~ai~~~~~~~~i~y~l~~~~~~~~~~~~~~---~~--~~p~~~~~~~~g~~ 344 (584)
+....|++.|+|+++|++||+|||+|+.||+|+.++.+..++.....+.+..+.++|.- ++ .+|+.+.+.+.-++
T Consensus 258 f~~~~wt~sGyDa~~H~aEE~~nAsk~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D~~~v~ns~~g~p~~~i~~~~lg~ 337 (550)
T KOG1289|consen 258 FFNPAWTMSGYDAAAHMAEETKNASKAAPRGIISSIAIGFILGWIIIIGIAYTIPDDLDAVLNSSLGQPIVQIYYQALGK 337 (550)
T ss_pred hccceeEEeccCchHHHHHHhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHhcCCCCChHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999998888875331 22 47999998865555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCc--hhhhcccCccccchHHHHHHHHHHHHHHHh-----hcHH
Q 007943 345 WAKYIVALGALKGMTTVLLANVIGQARYFTHIGRTHMAP--PFLAAINGKTGTPVNATVVMSLANSVVAFF-----TSLD 417 (584)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~ardg~lP--~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~-----~~~~ 417 (584)
-....+....+++.+.+..+.+.+.||+.|+.+|||.+| ++++|+||++++|.+|+++..+++.++.++ .+++
T Consensus 338 k~~v~~~~l~ii~~f~~gi~s~~a~SR~v~afaRDg~LP~S~~~~~v~~~t~~P~nAv~l~~i~s~llgll~L~s~~Af~ 417 (550)
T KOG1289|consen 338 KGAVFLLSLIIIALFFMGISSLTASSRLVYAFARDGGLPFSKYLAKVNPQTKVPLNAVLLSCIISILLGLLILASATAFN 417 (550)
T ss_pred CceEehhHHHHHHHHHhhHHHHHHHHHHHhhhhccCCCCCcceeeecCCCCCCcHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 444777888888899999999999999999999999999 999999988899999999999999887777 4799
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCccchhHHHHHHHHHHHHHhHhhhhccccCCCcchhhHHHHHHHHHHH
Q 007943 418 VLANLLSISTLFIFSLVALALLVRRYYVAGETSECDQKKLIVFLALIISSSIASSAYWATSDNGWIGYIVTVPVWFLATM 497 (584)
Q Consensus 418 ~l~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (584)
.+.+.+.++.+++|.+..++.+.++|+ ..+|.+ |++++.+. +.+++++.|.++.+
T Consensus 418 Alfs~a~i~l~~Ay~iP~~~rlf~~r~---~f~~gp---------------------~~lGk~s~-p~~~i~v~w~lf~~ 472 (550)
T KOG1289|consen 418 ALFSAAAIALFIAYAIPIFCRLFFGRD---DFRPGP---------------------FNLGKFSK-PIGIIAVLWVLFMI 472 (550)
T ss_pred HHHHHHHHHHHHHHHHhHHhheeeccc---ccCCCC---------------------cccccccc-chHHHHHHHHHHHH
Confidence 999999999999999999888876665 222333 34444333 45666699999999
Q ss_pred HHhhhhhccCCCCccccccccHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhhcccc
Q 007943 498 GLQLTVKEARKPKMWGVPLLPWLPSACIAVNVFVMGSVDGQSFVRFMIWTFLLLVYYLFVALHASYD 564 (584)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~~~~ 564 (584)
++.++|...+.... +||| +.+++++.+++.+++|+.++||..+.
T Consensus 473 vil~fP~~~pvT~~----------------------~MNy-a~VV~gg~~lf~li~~~~~~~k~f~g 516 (550)
T KOG1289|consen 473 VILCFPSVYPVTAD----------------------NMNY-ACVVYGGVMLFCLIYYFVSARKWFKG 516 (550)
T ss_pred HHHhCCcccCCCcc----------------------cCce-EEEeehhhhhhhhheeeeecceeecC
Confidence 99999988766554 8999 88999999999999999887766543
No 19
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=100.00 E-value=1.1e-50 Score=433.62 Aligned_cols=419 Identities=17% Similarity=0.247 Sum_probs=339.6
Q ss_pred ccccCHHHHHHHHHHHhhhhhhHHccHHhHhhccCch-HHHHHHHHHHHHHHHHHHHHhhhhcccc-CCchhhhHHHHhc
Q 007943 70 KKNLNWWDLIWFGIGAVMGAGIFVLTGEAARNFAGPA-VIISYLISGISALLSVLCYTEFSVELPV-AGGSFAYLRVELG 147 (584)
Q Consensus 70 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ii~~l~~~~~~~~~~el~~~~P~-~Gg~y~~~~~~~g 147 (584)
||+++.+|+.+++++.++|+|+|..++..+.. +||. .+++|+++++++++.+++++||++++|+ +||.|.|+++.+|
T Consensus 1 ~r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~-~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~~gG~~~~~~~~~~g 79 (478)
T TIGR00913 1 KKSLKQRHIQMIALGGTIGTGLLVGSGTALAT-GGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPVVSGSFATYASRFVD 79 (478)
T ss_pred CCCCcHHHHHHHHHhccccchhhhcchhHHHh-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHcC
Confidence 58899999999999999999999999999987 8986 7999999999999999999999999995 5577789999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcceeccccccccCcchhHHHHHHHHHHHHHhccchhHHHH
Q 007943 148 DFVAYIAAGNILFEYVVSGASVARSWTSYFATLCNHDPGSFRIHVSSVAEDYSHLDPIAVIVSFFVCVGACLSMKGSSRF 227 (584)
Q Consensus 148 ~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 227 (584)
|.+||.+||.+|++++...+......+.++....+.. + ...+..+++++.+++|++|+|..+++
T Consensus 80 ~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---------------~~~~~~~~~~~~~~in~~gv~~~~~~ 143 (478)
T TIGR00913 80 PAFGFAVGWNYWLQWLIVLPLELVTASMTIQYWTDKV-N---------------PAVWIAIFYVFIVIINLFGVKGYGEA 143 (478)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-C---------------HHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 9999999999999999999999998888887543211 0 11333455667789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc--ccc---C--------CCCCCCCC----chhHHHHHHHHHHHhhchhhhhhhhcccc
Q 007943 228 NSVATIVHIVILIFILITGLTQ--ANT---A--------NYAIFAPN----GVRGILKASAVLFFAYVGFDGVATLGEEV 290 (584)
Q Consensus 228 ~~~~~~~~~~~~~~~~i~~~~~--~~~---~--------~~~~~~~~----g~~~~~~~~~~~~~~~~G~e~~~~~a~E~ 290 (584)
+.+.+.+|+..++.+++.++.. .+. . +..++.+. .+.++..++..++|+|.|+|.+++++||+
T Consensus 144 ~~~~~~~ki~~l~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~ 223 (478)
T TIGR00913 144 EFWFSSIKILAIIGFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAGEA 223 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHHhh
Confidence 9999999888776665554331 111 0 11123222 25678889999999999999999999999
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHHHHHHHHhccCCCCC---C-------CCChHHHHHHHhCchHHHHHHHHHHHHHHHH
Q 007943 291 KNPGRDIPIGLIGSMVITITVYCVLSATLCLMQPYSQI---D-------VDAPFTLAFQAVGMNWAKYIVALGALKGMTT 360 (584)
Q Consensus 291 k~p~r~~p~ai~~~~~~~~i~y~l~~~~~~~~~~~~~~---~-------~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~ 360 (584)
|||+||+|||++.+..+++++|++..++.....|.++. + .++|+..+.+..|.++...++.++.+++.++
T Consensus 224 knP~r~iPrai~~~~~~~~~~Y~l~~~~~~~~~p~~~~~l~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~s~~~ 303 (478)
T TIGR00913 224 ANPRKSIPRAAKRTFWRILVFYILTLFLIGFLVPYNDPRLLSSSSSSDSAASPFVIAIQNHGIKVLPHIFNAVILISVLS 303 (478)
T ss_pred cChhhHHHHHHHHHHHHHHHHHHHHHHHheeeccCCChhhcccccCCCcCCCcHHHHHHHcCCchHhHHHHHHHHHHHHH
Confidence 99999999999999999999999998888777776642 1 1268888788888888999999999999999
Q ss_pred HHHHHHhhhHHHHHHHHhcCCCchhhhcccCccccchHHHHHHHHHHHHHHHh------hcHHHHHHHHHHHHHHHHHHH
Q 007943 361 VLLANVIGQARYFTHIGRTHMAPPFLAAINGKTGTPVNATVVMSLANSVVAFF------TSLDVLANLLSISTLFIFSLV 434 (584)
Q Consensus 361 ~~~~~~~~~sR~l~~~ardg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~ 434 (584)
+.++.+++.||++++|||||.+|++|+|+| |+++|++|++++.+++.+..+. ..++.+.++++...++.|++.
T Consensus 304 ~~~~~~~~~sR~l~a~ardg~lP~~f~k~~-~~~~P~~Ai~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~i~y~~~ 382 (478)
T TIGR00913 304 AANSSLYASSRTLYALAHQGLAPKIFAYVD-RRGVPYVAVIVSSLFGLLAFLAVSKKEAEVFTWLLNISGLSGFFTWMCI 382 (478)
T ss_pred HHHhhHHHHHHHHHHHHhCCcccHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999 7899999999999987654333 247889999999999999999
Q ss_pred HHHHHhhhhhcCCCCCccchhHHHHHHHHHHHHHhHhhhhccccCCCcchhhHHHHHHHHHHHHHhhhhhccCCCCcccc
Q 007943 435 ALALLVRRYYVAGETSECDQKKLIVFLALIISSSIASSAYWATSDNGWIGYIVTVPVWFLATMGLQLTVKEARKPKMWGV 514 (584)
Q Consensus 435 ~~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (584)
+++.+++|++.++.. +++.++|||.
T Consensus 383 ~~~~i~~r~~~~~~~-------------------------------------------------------~~~~~~p~~~ 407 (478)
T TIGR00913 383 CLSHIRFRKAMKAQG-------------------------------------------------------RSLDELPYKS 407 (478)
T ss_pred HHHHHHHHHHHHhcC-------------------------------------------------------CCcccCCccC
Confidence 999999888754321 2345678999
Q ss_pred ccccHHHHHHHHHHHHHHhcCCh----------hhHHHHHHHHHHHHHHHHHHhhhc
Q 007943 515 PLLPWLPSACIAVNVFVMGSVDG----------QSFVRFMIWTFLLLVYYLFVALHA 561 (584)
Q Consensus 515 ~~~p~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~i~~~~y~~~~~~~ 561 (584)
|..|+.++++++.++++.....+ .......+...+.++.|..|+.++
T Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (478)
T TIGR00913 408 QTGPYGSYYALFFNILILIAQGYVAFAPVKFSAKSFFEAYLSLPIFIALYIGHKVYK 464 (478)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999888888777765322 122233444455555666665443
No 20
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=100.00 E-value=1.1e-50 Score=427.37 Aligned_cols=411 Identities=16% Similarity=0.201 Sum_probs=338.7
Q ss_pred cccccCHHHHHHHHHHHhhhhhhHHccHHhHhhccCchHHHHHHHHHHHHHHHHHHHHhhhhccccCCchhhhHHHHhch
Q 007943 69 MKKNLNWWDLIWFGIGAVMGAGIFVLTGEAARNFAGPAVIISYLISGISALLSVLCYTEFSVELPVAGGSFAYLRVELGD 148 (584)
Q Consensus 69 l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ii~~l~~~~~~~~~~el~~~~P~~Gg~y~~~~~~~g~ 148 (584)
.+|+++.++++++.++.++|+|+|..|+... . +||..+++|+++++.+++.+++++||++++|++||.|+|++| +||
T Consensus 3 ~~~~lg~~~~~~l~vg~~IGsGif~lp~~~a-~-~G~~~i~~wli~~~~~l~~al~~aEL~s~~P~~GG~y~y~~~-~g~ 79 (435)
T PRK10435 3 SAKKIGLFACTGVVAGNMMGSGIALLPANLA-S-IGSIAIWGWIISIIGAMSLAYVYARLATKNPQQGGPIAYAGE-ISP 79 (435)
T ss_pred CCCcCCHHHHHHHHHhhHHHHHHHHHHHHHH-H-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhHHHHH-HCc
Confidence 4789999999999999999999999999864 4 788899999999999999999999999999999999999999 899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcceeccccccccCcchhHHHHHHHHHHHHHhccchhHHHHH
Q 007943 149 FVAYIAAGNILFEYVVSGASVARSWTSYFATLCNHDPGSFRIHVSSVAEDYSHLDPIAVIVSFFVCVGACLSMKGSSRFN 228 (584)
Q Consensus 149 ~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 228 (584)
.+||.+||.+|................|+...++...+.+ ...++.++++++.+++|++|+|..++++
T Consensus 80 ~~gf~~gw~~~~~~~~~~~~~~~~~~~y~~~~~p~~~~~~------------~~~~~~~~i~~~~~~ln~~gvk~~~~i~ 147 (435)
T PRK10435 80 AFGFQTGVLYYHANWIGNLAIGITAVSYLSTFFPVLNDPI------------PAGIACIAIVWVFTFVNMLGGTWVSRLT 147 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCChH------------HHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 9999999999987777767777777788877664321111 0124556677788999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccC----CCCCCCCCchhHHHHHHHHHHHhhchhhhhhhhcccccCCCCCchhHHHHH
Q 007943 229 SVATIVHIVILIFILITGLTQANTA----NYAIFAPNGVRGILKASAVLFFAYVGFDGVATLGEEVKNPGRDIPIGLIGS 304 (584)
Q Consensus 229 ~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~r~~p~ai~~~ 304 (584)
.+..+++++.++.+.+.++.+.+++ ++.+..+.++.+++.++..++|+|.|+|.+++++||+|||+||+|||+..+
T Consensus 148 ~i~~~~~li~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~r~iPrAi~~~ 227 (435)
T PRK10435 148 TIGLVLVLIPVVGTAIVGWHWFDAATYAANWNTSDTTDGHAIIKSILLCLWAFVGVESAAVSTGMVKNPKRTVPLATMLG 227 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCHHhhcccccCCCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCccccccHHHHHH
Confidence 9988888877666655555443333 222223445778999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCC-CCChHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCc
Q 007943 305 MVITITVYCVLSATLCLMQPYSQID-VDAPFTLAFQAVGMNWAKYIVALGALKGMTTVLLANVIGQARYFTHIGRTHMAP 383 (584)
Q Consensus 305 ~~~~~i~y~l~~~~~~~~~~~~~~~-~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~ardg~lP 383 (584)
..+++++|++..++.....|.++++ .++|+.++++..++++...++++..+++++++.++.++..+|..++|||||.+|
T Consensus 228 ~~iv~ilYil~~~~~~~~~p~~~~~~~~~p~~~~~~~~~g~~~~~~i~~~~~i~~l~~~~~~~~~~~r~~~~~ardG~lP 307 (435)
T PRK10435 228 TGLAGIIYIAATQVISGMFPASVMAASGAPFAISASTILGNWAAPLVSAFTAFACLTSLGSWMMLVGQAGVRAANDGNFP 307 (435)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHhcCCCcHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 9999999999999999999998884 567999999988889999999988899999999999999999999999999999
Q ss_pred hhhhcccCccccchHHHHHHHHHHHHHHHh------------hcHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCc
Q 007943 384 PFLAAINGKTGTPVNATVVMSLANSVVAFF------------TSLDVLANLLSISTLFIFSLVALALLVRRYYVAGETSE 451 (584)
Q Consensus 384 ~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~------------~~~~~l~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~~~ 451 (584)
|+|+|+| |+|+|.+|++++.+++.++... ..++.+.++++...++.|++++++.+++|++ +
T Consensus 308 ~~f~k~n-k~g~P~~Al~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~y~~~~~~~ir~~~~--~---- 380 (435)
T PRK10435 308 KVYGEVD-KNGIPKKGLLLAAVKMTALMILITLMNSSGGKASDLFGELTGIAVLLTMLPYFYSCVDLIRFEGV--N---- 380 (435)
T ss_pred HHHHhhC-cCCCCHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--c----
Confidence 9999999 7899999999988776543321 2578899999999999999999998854321 1
Q ss_pred cchhHHHHHHHHHHHHHhHhhhhccccCCCcchhhHHHHHHHHHHHHHhhhhhccCCCCccccccccHHHHHHHHHHHHH
Q 007943 452 CDQKKLIVFLALIISSSIASSAYWATSDNGWIGYIVTVPVWFLATMGLQLTVKEARKPKMWGVPLLPWLPSACIAVNVFV 531 (584)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 531 (584)
+|.+..|+.+.++.+.+++.
T Consensus 381 ------------------------------------------------------------~~~~~~~~~~~~~~~~~~~~ 400 (435)
T PRK10435 381 ------------------------------------------------------------IRNFVSLICSVLGCVFCFIA 400 (435)
T ss_pred ------------------------------------------------------------hhHHHHHHHHHHHHHHHHHH
Confidence 11122456677776666666
Q ss_pred HhcCChhhHHHHHHHHHHHHHHHHHHhhhcccc
Q 007943 532 MGSVDGQSFVRFMIWTFLLLVYYLFVALHASYD 564 (584)
Q Consensus 532 ~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~~~~ 564 (584)
+.. ..+..+..++.++.+.|+.|+|||..+
T Consensus 401 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (435)
T PRK10435 401 LMG---ASSFELAGTFIVSLIILMFYARKMHER 430 (435)
T ss_pred HHH---hhHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 653 355677888888888888887776533
No 21
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-52 Score=441.06 Aligned_cols=487 Identities=31% Similarity=0.523 Sum_probs=374.7
Q ss_pred cccccccCHHHHHHHHHHHhhhhhhHHccHHhHhhccCchHHHHHHHHHHHHHHHHHHHHhhhhcccc-CCchhhhHHHH
Q 007943 67 HEMKKNLNWWDLIWFGIGAVMGAGIFVLTGEAARNFAGPAVIISYLISGISALLSVLCYTEFSVELPV-AGGSFAYLRVE 145 (584)
Q Consensus 67 ~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ii~~l~~~~~~~~~~el~~~~P~-~Gg~y~~~~~~ 145 (584)
+++||+|+.+|+.++++|.++|+|+|+..|..+...|||+.+++++++++.+++.+++++||+.++|. +||.|.|+++.
T Consensus 26 ~~lkR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~~P~~aGs~~~ya~~~ 105 (554)
T KOG1286|consen 26 TELKRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVRFPVSAGSFYTYAYRF 105 (554)
T ss_pred chhhccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHheecccccccceeeeeee
Confidence 58999999999999999999999999999999999666679999999999999999999999999999 59999999999
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcceeccccccccCcchhHHHHHHHHHHHHHh-ccchhH
Q 007943 146 LGDFVAYIAAGNILFEYVVSGASVARSWTSYFATLCNHDPGSFRIHVSSVAEDYSHLDPIAVIVSFFVCVGAC-LSMKGS 224 (584)
Q Consensus 146 ~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~ 224 (584)
+|+.+||.+||.|++.|+...++++.+.+.+++++.+ ...+....+..+...+..+.+++++++.+..+-. .+.|..
T Consensus 106 i~e~~aF~~gWny~l~y~i~~a~e~~a~s~~~~~w~~--~~~~~~~~~~~~~~~~~~~fla~~v~in~~gv~~~ge~ef~ 183 (554)
T KOG1286|consen 106 VGESLAFAIGWNYLLEYVIGLAAEARAWSSYLDYWTG--ASLIGILVDTVNPGGWIPDFLAFILIINLFGVLAYGEVEFS 183 (554)
T ss_pred eCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--cccccccccCCCCCccHHHHHHHHHHHHHHHHhhccceeeh
Confidence 9999999999999999999999999999999999871 1111111112222211222333333333333333 566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccCCCC---------CCCCCchhHHHHHHHHHHHhhchhhhhhhhcccccCCCC
Q 007943 225 SRFNSVATIVHIVILIFILITGLTQANTANYA---------IFAPNGVRGILKASAVLFFAYVGFDGVATLGEEVKNPGR 295 (584)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---------~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~r 295 (584)
..++.+++.+.++++.+++.+|....|..++. +|.|.++.+++.++..+.|+|.|+|..+..+||+|||||
T Consensus 184 ~~~~kvl~~v~~~Il~iVi~~G~~~~d~~~~ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~a~E~kNP~k 263 (554)
T KOG1286|consen 184 LAFNKILTAVGFIILAIVIIAGGGPADVKNWIGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVATTAEEAKNPRK 263 (554)
T ss_pred HHHHHHHHHHHHHHhheeeecCCCcCCcCCCcCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHHHHhccCCcc
Confidence 66677777777666666666676666654544 377788999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHhccCCCC--CCCCC----hHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007943 296 DIPIGLIGSMVITITVYCVLSATLCLMQPYSQ--IDVDA----PFTLAFQAVGMNWAKYIVALGALKGMTTVLLANVIGQ 369 (584)
Q Consensus 296 ~~p~ai~~~~~~~~i~y~l~~~~~~~~~~~~~--~~~~~----p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (584)
++|+|+..++.++.++|++..+.+...+|+++ +++++ |+..+.+..+.+.+..++++++++++.+++|+.+++.
T Consensus 264 ~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~spF~iai~~~~~k~~~~ivna~iL~~~~s~~n~~~y~~ 343 (554)
T KOG1286|consen 264 AIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALASPFVIAIGNAGAKYLPHIVNAGILIGLLSSLNSSLYAG 343 (554)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCccccHHHHHHhccCccccchhhhHHHHHHHHHHHHHHhHHh
Confidence 99999999999999999999999999999988 66655 5555555555566666999999999999999999999
Q ss_pred HHHHHHHHhcCCCchhhhcccCccccchHHHHHHHHHHHHHHHhhc------HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 007943 370 ARYFTHIGRTHMAPPFLAAINGKTGTPVNATVVMSLANSVVAFFTS------LDVLANLLSISTLFIFSLVALALLVRRY 443 (584)
Q Consensus 370 sR~l~~~ardg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~~~------~~~l~~~~~~~~~~~~~~~~~~~i~~r~ 443 (584)
+|.+++||+||++||+|+++|+| |+|++|++++.+++.+..+..+ |+++.++++++.++.|.+++++.+++|+
T Consensus 344 sR~l~amA~~G~~Pk~f~~v~~~-g~P~~a~~v~~~~~~l~~~~~~~~~~~~f~~L~~~~si~tl~~w~~i~~~~i~~R~ 422 (554)
T KOG1286|consen 344 SRVLYALAKDGLAPKFFARVDRR-GVPLVAVLVSGLFGALAALNFSLGAATVFNWLVNLSSIGTLFAWTLVALSHLRFRY 422 (554)
T ss_pred HHHHHHHHhcCCcchHHhhcCCC-CCchhHHHHHHHHHHHHHHHhccccchHHHHHHHHHhHHHHHHHHHHHHHHeeeee
Confidence 99999999999999999999966 9999999999999988877743 5999999999999999999999999998
Q ss_pred hcCCCC-----Cccc--hhHHHHHHHHHHHHHhHhhhhccc----c---C-CCcchhhHHHHHHHHHHHHHhhhhhccCC
Q 007943 444 YVAGET-----SECD--QKKLIVFLALIISSSIASSAYWAT----S---D-NGWIGYIVTVPVWFLATMGLQLTVKEARK 508 (584)
Q Consensus 444 ~~~~~~-----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~----~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (584)
..++.. .+++ ...+......++.........|.. + + ......++...+++...+.+....|....
T Consensus 423 a~~~q~~~~~~~~~~s~~~~~gs~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~yl~~~i~l~~~i~~~i~~~~~~~ 502 (554)
T KOG1286|consen 423 AMKVQGRSLDELPYKSPTGPYGSYYGLLVNILILLAQFYVAFFPIGSEFSAWGFFEAYLGLPILLIFYIGYKIYAKPTNT 502 (554)
T ss_pred cccccCCCcccccccCCCCCchhHHHHHHHHHHHHHHHhccccccCCCCcHHHHHHHHHHHHHHHHHHHHHheeeccccc
Confidence 653322 1122 123334444444333333333321 1 1 11122333333344444444433332211
Q ss_pred CCccccccccHHHHHHHHHHHHHHhcCChhhHH--HHHHHHHHHHHHHHH-Hhhhccc
Q 007943 509 PKMWGVPLLPWLPSACIAVNVFVMGSVDGQSFV--RFMIWTFLLLVYYLF-VALHASY 563 (584)
Q Consensus 509 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~y~~-~~~~~~~ 563 (584)
+.|+.|.+.+..+.+++...+..++. ....|...+...|.. |+.+|.+
T Consensus 503 -------~vp~~~~idl~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~ 553 (554)
T KOG1286|consen 503 -------LVPLSPCIDLDTNIYLMDSLDAETWIEERFEVWLEIGLLIYFFWYGIRHSK 553 (554)
T ss_pred -------ccCCccceEEEecceeeccccchhhhhhhHHHHhhhhhHHHHHhhhhhccc
Confidence 56677778888888888887777888 888999998888877 6666653
No 22
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=100.00 E-value=1.7e-50 Score=426.43 Aligned_cols=405 Identities=18% Similarity=0.261 Sum_probs=339.6
Q ss_pred HHHHHhhhhhhHHccHHhHhhccCchHHHHHHHHHHHHHHHHHHHHhhhhccccCCchhhhHHHHhchHHHHHHHHHHHH
Q 007943 81 FGIGAVMGAGIFVLTGEAARNFAGPAVIISYLISGISALLSVLCYTEFSVELPVAGGSFAYLRVELGDFVAYIAAGNILF 160 (584)
Q Consensus 81 ~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ii~~l~~~~~~~~~~el~~~~P~~Gg~y~~~~~~~g~~~g~~~g~~~~l 160 (584)
+++|++||+|+|..++..++. +||..+++|+++++++++.+++++||++++|++||.|.|++|.+||.+||.+||.+|+
T Consensus 2 ~~ig~~IGsGif~~~g~~~~~-aG~~~ll~~~i~gi~~~~~al~~aEL~s~~P~~Gg~y~y~~~~~G~~~gf~~gw~~~~ 80 (446)
T PRK10197 2 LSIAGVIGASLFVGSSVAIAE-AGPAVLLAYLFAGLLVVMIMRMLAEMAVATPDTGSFSTYADKAIGRWAGYTIGWLYWW 80 (446)
T ss_pred eeecchhHhHHHHHhHHHHHh-cChHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHcChHHHHHHHHHHHH
Confidence 578899999999999999987 8999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHccCCCCCcceeccccccccCcchhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHH
Q 007943 161 EYVVSGASVARSWTSYFATLCNHDPGSFRIHVSSVAEDYSHLDPIAVIVSFFVCVGACLSMKGSSRFNSVATIVHIVILI 240 (584)
Q Consensus 161 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 240 (584)
.++...+.++...+.+++...+.. + ...++++++++.+.+|++|+|..+++|.+++.+|++.++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~-~---------------~~~~~~~~l~~~~~lN~~gv~~~~~i~~~~~~~ki~~li 144 (446)
T PRK10197 81 FWVLVIPLEANIAAMILHSWVPGI-P---------------IWLFSLVITLALTGSNLLSVKNYGEFEFWLALCKVIAIL 144 (446)
T ss_pred HHHHHHHHHHHHHHHHHHhccccC-c---------------HHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHH
Confidence 999998888877777666543211 0 226778888889999999999999999999999999888
Q ss_pred HHHHHhhccc---c----cCCC------CCCCCCchhHHHHHHHHHHHhhchhhhhhhhcccccCCCCCchhHHHHHHHH
Q 007943 241 FILITGLTQA---N----TANY------AIFAPNGVRGILKASAVLFFAYVGFDGVATLGEEVKNPGRDIPIGLIGSMVI 307 (584)
Q Consensus 241 ~~~i~~~~~~---~----~~~~------~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~r~~p~ai~~~~~~ 307 (584)
.+++.++... . ..+. .++.|+++.++..++..++|+|.|+|.+++.+||+|||+|++|||+..+...
T Consensus 145 ~~ii~~~~~~~g~~~~~~~~~~~~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~r~iPrai~~~~~~ 224 (446)
T PRK10197 145 AFIFLGAVAISGFYPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPEKHIVRATNSVIWR 224 (446)
T ss_pred HHHHHHHHHhcCCCCCCCCCcchhcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhhHHHHHHHHHHH
Confidence 7776655421 1 1111 1344677889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCCCCC--CChHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCchh
Q 007943 308 TITVYCVLSATLCLMQPYSQIDV--DAPFTLAFQAVGMNWAKYIVALGALKGMTTVLLANVIGQARYFTHIGRTHMAPPF 385 (584)
Q Consensus 308 ~~i~y~l~~~~~~~~~~~~~~~~--~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~ardg~lP~~ 385 (584)
+.++|++..++.....|.++.+. .+++..+.+..++++...++++..+++.+++.++++++.||++|+|||||.+|++
T Consensus 225 i~i~Yil~~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~a~ardg~lP~~ 304 (446)
T PRK10197 225 ISIFYLCSIFVVVALIPWNMPGLKAVGSYRSVLELLNIPHAKLIMDCVILLSVTSCLNSALYTASRMLYSLSRRGDAPAV 304 (446)
T ss_pred HHHHHHHHHHHHheecCcCcccccccCcHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHH
Confidence 99999999999988888876543 3567778888899999999999999999999999999999999999999999999
Q ss_pred hhcccCccccchHHHHHHHHHHHHHHHh------hcHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCccchhHHHH
Q 007943 386 LAAINGKTGTPVNATVVMSLANSVVAFF------TSLDVLANLLSISTLFIFSLVALALLVRRYYVAGETSECDQKKLIV 459 (584)
Q Consensus 386 ~~~~~~~~~~P~~ai~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~~~~~~~~~~~ 459 (584)
|+|+| |+|+|++|++++.+++.+..+. ..++.+.++.+...++.|.+.+++.+++||+.+
T Consensus 305 ~~~~~-~~~~P~~Ail~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~li~y~~~~~a~i~lr~~~~------------- 370 (446)
T PRK10197 305 MGKIN-RSKTPYVAVLLSTGAAFLTVVVNYYAPAKVFKFLIDSSGAIALLVYLVIAVSQLRMRKILR------------- 370 (446)
T ss_pred HHhhC-cCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------
Confidence 99999 8899999999998877655444 258899999999999999999999999998632
Q ss_pred HHHHHHHHHhHhhhhccccCCCcchhhHHHHHHHHHHHHHhhhhhccCCCCccccccccHHHHHHHHHHHHHHhcC----
Q 007943 460 FLALIISSSIASSAYWATSDNGWIGYIVTVPVWFLATMGLQLTVKEARKPKMWGVPLLPWLPSACIAVNVFVMGSV---- 535 (584)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~---- 535 (584)
+++.+.+||.|+.|+.++++++.+.+++..+
T Consensus 371 ---------------------------------------------~~~~~~~~~~~~~p~~~~~~i~~~~~~~~~~~~~~ 405 (446)
T PRK10197 371 ---------------------------------------------AEGSEIRLRMWLYPWLTWLVIGFITFVLVVMLFRP 405 (446)
T ss_pred ---------------------------------------------hcCCCCCCcCCCcchHHHHHHHHHHHHHHHHHHCc
Confidence 1233567899999999999888887666543
Q ss_pred ChhhHHHHHHHHHHHHHHHH-HHhhhc
Q 007943 536 DGQSFVRFMIWTFLLLVYYL-FVALHA 561 (584)
Q Consensus 536 ~~~~~~~~~~~~~i~~~~y~-~~~~~~ 561 (584)
+.........++++++..|+ ..+|.+
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (446)
T PRK10197 406 AQQLEVISTGLLAIGIICTVPIMARWK 432 (446)
T ss_pred chHHHHHHHHHHHHHHHhhhHHHhhhc
Confidence 22222334566677877777 444433
No 23
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=100.00 E-value=5.8e-50 Score=426.26 Aligned_cols=419 Identities=16% Similarity=0.249 Sum_probs=346.6
Q ss_pred cccccCHHHHHHHHHHHhhhhhhHHccHHhHhhccCch-HHHHHHHHHHHHHHHHHHHHhhhhcccc-CCchhhhHHHHh
Q 007943 69 MKKNLNWWDLIWFGIGAVMGAGIFVLTGEAARNFAGPA-VIISYLISGISALLSVLCYTEFSVELPV-AGGSFAYLRVEL 146 (584)
Q Consensus 69 l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ii~~l~~~~~~~~~~el~~~~P~-~Gg~y~~~~~~~ 146 (584)
++|++|.++..++++++++|+|+|..++..... +||. .+++|+++++++++.+++++|+++++|+ +||.|+|+++.+
T Consensus 5 ~~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~-~g~~~~~~~wli~~~~~~~~al~~aEl~s~~P~~sGG~y~y~~~~~ 83 (473)
T TIGR00905 5 KSKKLGLFALTALVIGSMIGSGIFSLPQNLASV-AGPGAVIIGWIITGVGMLALAFVFAILATKKPELDGGIYAYAREGF 83 (473)
T ss_pred cCCCccHHHHHHHHHHHHHhHHHHHhHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHc
Confidence 478999999999999999999999999987765 8886 7899999999999999999999999999 999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcceeccccccccCcchhHHHHHHHHHHHHHhccchhHHH
Q 007943 147 GDFVAYIAAGNILFEYVVSGASVARSWTSYFATLCNHDPGSFRIHVSSVAEDYSHLDPIAVIVSFFVCVGACLSMKGSSR 226 (584)
Q Consensus 147 g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 226 (584)
||..||.+||.+|+.+.......+....+++...++..... +.....+..++++++.+.+|++|+|..+|
T Consensus 84 G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~----------~~~~~~~~~~~~~~~~~~ln~~Gi~~~~~ 153 (473)
T TIGR00905 84 GPYIGFMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLFGSG----------NPVPSILGASVLLWVFTFLVLRGVRQAAF 153 (473)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC----------CcHHHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 99999999999999988887777777778887776521100 00012256677777889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccccCCCC-CC----C---CCchhHHHHHHHHHHHhhchhhhhhhhcccccCCCCCch
Q 007943 227 FNSVATIVHIVILIFILITGLTQANTANYA-IF----A---PNGVRGILKASAVLFFAYVGFDGVATLGEEVKNPGRDIP 298 (584)
Q Consensus 227 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~----~---~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~r~~p 298 (584)
++.+...++++.++++++.++...+.+++. ++ . ++++.++..+....+|+|.|+|.+++++||+|| +|++|
T Consensus 154 i~~~~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~-~r~iP 232 (473)
T TIGR00905 154 INTITTIAKLIPLFLFIIIGWFWFKLDLFTADFWGHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRAKN-KSDVG 232 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCchhcccccCccCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc-cccch
Confidence 999999999988887777765533333221 11 1 123567888889999999999999999999999 99999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhccCCCCCC-CCCh-HHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 007943 299 IGLIGSMVITITVYCVLSATLCLMQPYSQID-VDAP-FTLAFQAVGMNWAKYIVALGALKGMTTVLLANVIGQARYFTHI 376 (584)
Q Consensus 299 ~ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~-~~~p-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~ 376 (584)
|++..+..+++++|++...+.....|.+++. .++| ..++.+...+++...++.+..+++.+++.++.+.+.||++|+|
T Consensus 233 rai~~~~~i~~~~Yil~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~g~~~~~~i~i~~~is~~~~~~~~~~~~sR~~~am 312 (473)
T TIGR00905 233 KATVLGTLGALVIYILITLLSLGVLPQQELANLPNPSMAAVLEMIVGKWGAVLISLGLIISVLGSLLSWTMLAAEVPFSA 312 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhhCCCchHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988888888764 4678 6777777777888889999999999999999999999999999
Q ss_pred HhcCCCchhhhcccCccccchHHHHHHHHHHHHHHHh-----hcHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCc
Q 007943 377 GRTHMAPPFLAAINGKTGTPVNATVVMSLANSVVAFF-----TSLDVLANLLSISTLFIFSLVALALLVRRYYVAGETSE 451 (584)
Q Consensus 377 ardg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~~~ 451 (584)
||||.+|++|+|+|| +++|++|++++.+++.++.+. ..++.+.++.+.+.++.|++.+++.+++|+|++. +
T Consensus 313 ardg~lP~~~~~v~~-~~tP~~Ai~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~a~~~lr~~~~~-~-- 388 (473)
T TIGR00905 313 AKDGLFPKIFGRVNK-NGAPSVALLLTNILIQLFLLLTLLTSSAYNVLVSLAVVMILVPYLLSAAYLLKLAKVGTY-P-- 388 (473)
T ss_pred HhCCChhHHHHhhCc-cCCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc-c--
Confidence 999999999999995 599999999999987655443 4688999999999999999999999998877411 0
Q ss_pred cchhHHHHHHHHHHHHHhHhhhhccccCCCcchhhHHHHHHHHHHHHHhhhhhccCCCCccccccccHHHHHHHHHHHHH
Q 007943 452 CDQKKLIVFLALIISSSIASSAYWATSDNGWIGYIVTVPVWFLATMGLQLTVKEARKPKMWGVPLLPWLPSACIAVNVFV 531 (584)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 531 (584)
+ .+.|..|+++.++++.++++
T Consensus 389 -------------------------------------------------------~----~~~~~~~~~~~l~~~~~~~~ 409 (473)
T TIGR00905 389 -------------------------------------------------------K----IKNRKALIVGVIACVYSIWL 409 (473)
T ss_pred -------------------------------------------------------c----cccchHHHHHHHHHHHHHHH
Confidence 0 11134566777888888877
Q ss_pred HhcCChhhHHHHHHHHHHHHHHHHHHhhhcc
Q 007943 532 MGSVDGQSFVRFMIWTFLLLVYYLFVALHAS 562 (584)
Q Consensus 532 ~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~~ 562 (584)
....++.......+++++|...|..++|+++
T Consensus 410 ~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~ 440 (473)
T TIGR00905 410 LYAAGLKYLLLGFILYAPGIIFYGRARKERG 440 (473)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 7777776666777888889888877666554
No 24
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=100.00 E-value=2.3e-50 Score=432.86 Aligned_cols=400 Identities=22% Similarity=0.321 Sum_probs=327.7
Q ss_pred cccccccccCHHHHHHHHHHHhhhhhhHHccHHhHhhccCch--HHHHHHHHHHHHHHHHHHHHhhhhccccCCchhhhH
Q 007943 65 SEHEMKKNLNWWDLIWFGIGAVMGAGIFVLTGEAARNFAGPA--VIISYLISGISALLSVLCYTEFSVELPVAGGSFAYL 142 (584)
Q Consensus 65 ~~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~--~~~~~ii~~l~~~~~~~~~~el~~~~P~~Gg~y~~~ 142 (584)
++++++|+++.+++++++++.++|+|+|..++..+.. +|+. .+++|++++++.++.+++++||++++|++||.|+|+
T Consensus 36 ~~~~l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~-~G~~g~~~~~~ii~~i~~~~~al~~aELas~~P~sGG~y~~~ 114 (501)
T TIGR00911 36 EAVALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKN-AGSVGLALIMWAVCGIFSIVGALVYAELGTTIPKSGGEYNYI 114 (501)
T ss_pred cccccCccccHhHhhHhheeceEEeeEeecHHHHHhh-CCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhH
Confidence 4567999999999999999999999999999998877 6763 468899999999999999999999999999999999
Q ss_pred HHHhchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-HccCC-CCCcceeccccccccCcchhHHHHHHHHHHHHHhc
Q 007943 143 RVELGDFVAYIAAGNILF-EYVVSGASVARSWTSYFAT-LCNHD-PGSFRIHVSSVAEDYSHLDPIAVIVSFFVCVGACL 219 (584)
Q Consensus 143 ~~~~g~~~g~~~g~~~~l-~~~~~~a~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (584)
++.+||.+||+.+|..++ .+....+..+..+++|+.. .++.. .+.| ....++++++++.+++|++
T Consensus 115 ~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~------------~~~~i~~~~i~~~~~ln~~ 182 (501)
T TIGR00911 115 LEVFGPLLAFLRLWIELLVIRPGSQAVNALNFAIYILTPVFPDCEVPEW------------AIRLVAVLCVLLLTLVNCL 182 (501)
T ss_pred HhHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchH------------HHHHHHHHHHHHHHHHHHh
Confidence 999999999999998775 3345566667777777643 23211 1111 1236777788899999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhhcccc---cCCC--CC-CC--CCchhHHHHHHHHHHHhhchhhhhhhhccccc
Q 007943 220 SMKGSSRFNSVATIVHIVILIFILITGLTQAN---TANY--AI-FA--PNGVRGILKASAVLFFAYVGFDGVATLGEEVK 291 (584)
Q Consensus 220 g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~--~~-~~--~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k 291 (584)
|+|..+|++.+++.++++.++++++.++.... ..+. .. +. ++++.++..++..++|+|.|+|.+++++||+|
T Consensus 183 Gvk~~~~~~~i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~a~~~~~~af~G~e~~~~~a~E~k 262 (501)
T TIGR00911 183 SVKWATRVQDIFTACKLLALLLIIITGWVQLGKGGVESLNPKNAFEGTETSAGGIVLAFYSGIWAYGGWNYLNFVTEEVK 262 (501)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCcccccCCCCCcHHHHHHHHHHHHHHHHhHHHHhhhHHHhc
Confidence 99999999999999999988877776654321 1111 11 11 13456788899999999999999999999999
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCChHHHHH-HHhCchHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 007943 292 NPGRDIPIGLIGSMVITITVYCVLSATLCLMQPYSQIDVDAPFTLAF-QAVGMNWAKYIVALGALKGMTTVLLANVIGQA 370 (584)
Q Consensus 292 ~p~r~~p~ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~p~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~s 370 (584)
||+|++|||+..+..+++++|++..++.....|.+++..+++....+ +...+ ....++.++..++.+++.++.+++.|
T Consensus 263 nP~r~iPrAi~~s~~~v~~~Y~l~~~a~~~~~~~~~l~~~~~~~~~~~~~~~g-~~~~~i~~~~~is~~~~~~~~~~~~s 341 (501)
T TIGR00911 263 NPYRTLPIAIIISMPIVTFIYVLTNIAYFTVLSPEELLASLAVAVDFGERLLG-VMSWAMPALVGLSCFGSVNGSLFSSS 341 (501)
T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhcChHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998888888776544433333 33222 55677788888899999999999999
Q ss_pred HHHHHHHhcCCCchhhhcccCccccchHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCC
Q 007943 371 RYFTHIGRTHMAPPFLAAINGKTGTPVNATVVMSLANSVVAFFTSLDVLANLLSISTLFIFSLVALALLVRRYYVAGETS 450 (584)
Q Consensus 371 R~l~~~ardg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~~ 450 (584)
|++++|||||.+|++|+|+|||+++|+++++++++++.+....+++..+.++.+....+.|++.+++++++|+|+|+.+|
T Consensus 342 R~l~a~ardg~lP~~~~~v~~~~~~P~~all~~~~i~~l~~~~~~~~~l~~~~~~~~~i~y~l~~~a~i~lR~~~p~~~r 421 (501)
T TIGR00911 342 RLFFVGGREGHLPSLLSMIHVKRLTPLPSLLIVCTLTLLMLFSGDIYSLINLISFANWLFNALAVAGLLWLRYKRPEMNR 421 (501)
T ss_pred HHHHHHHhcCCccHHHHHhcCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHheeccCCCCCC
Confidence 99999999999999999999999999999999999888777677787888888889999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHHhHhhhhcccc
Q 007943 451 ECDQKKLIVFLALIISSSIASSAYWATS 478 (584)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (584)
++|.+.+.+.+.++.+..+.....+...
T Consensus 422 p~r~p~~~~~l~~~~~~~~~~~~~~~~~ 449 (501)
T TIGR00911 422 PIKVPLFFPVFFLLSCLFLIILSLYSPP 449 (501)
T ss_pred CccCchHHHHHHHHHHHHHhhhhhccCc
Confidence 9887766677777666666665555443
No 25
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=100.00 E-value=1.7e-49 Score=422.92 Aligned_cols=420 Identities=16% Similarity=0.243 Sum_probs=325.6
Q ss_pred HHhhhccccccccccCHHHHHHHHHHHh-hhhhhHHccHHhHhhccCchHHHHHHHHHHHHHHHHHHHHhhhhccccCCc
Q 007943 59 HQMRARSEHEMKKNLNWWDLIWFGIGAV-MGAGIFVLTGEAARNFAGPAVIISYLISGISALLSVLCYTEFSVELPVAGG 137 (584)
Q Consensus 59 ~~~~~~~~~~l~r~l~~~~~~~~~~~~~-ig~gi~~~~~~~~~~~~G~~~~~~~ii~~l~~~~~~~~~~el~~~~P~~Gg 137 (584)
++++ +++|+||+++.++.++++++.+ ++.|++..++..+.. +||..+++|+++++..++.+++++||++++|++||
T Consensus 3 ~~~g--~~~~L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~-~Gp~~~~~~li~~i~~l~~als~aEL~s~~P~aGG 79 (475)
T TIGR03428 3 QRFG--YQPQLHRKLGRYASFAAGFSFVSILTTIFQLFGFGYGF-GGPAFFWTWPVVFVGQLLVALNFAELAARYPISGA 79 (475)
T ss_pred hhcC--CccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCcHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Confidence 3445 7889999999999999999986 789999999999987 99999999999999999999999999999999999
Q ss_pred hhhhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-----CCCCcceeccccccccCcchhHHHHHHHH
Q 007943 138 SFAYLRVELGDFVAYIAAGNILFEYVVSGASVARSWTSYFATLCNH-----DPGSFRIHVSSVAEDYSHLDPIAVIVSFF 212 (584)
Q Consensus 138 ~y~~~~~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (584)
.|+|+++.+||.+||++||.+++++....+........++....+. .++++. .+.......+++++++++
T Consensus 80 ~Y~~~~~~~g~~~gf~~gW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 154 (475)
T TIGR03428 80 IYQWSRRMGGEVIGWFAGWFMIIAQIVTAAAAAIALQVVLPNIWSGFQIIGEDPTLT-----SPSGAANAVLLGSVLLVL 154 (475)
T ss_pred HHHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccc-----CCCchHHHHHHHHHHHHH
Confidence 9999999999999999999999999887777666665555433210 001110 011111134667777888
Q ss_pred HHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHhhcccccCC---CC----CCCCCchhHHHHHHHHHHHhhchhhhhhh
Q 007943 213 VCVGACLSMKGSSRFNSVATIVHIVILIFILITGLTQANTAN---YA----IFAPNGVRGILKASAVLFFAYVGFDGVAT 285 (584)
Q Consensus 213 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~----~~~~~g~~~~~~~~~~~~~~~~G~e~~~~ 285 (584)
.+.+|++|+|..++++.+..++++..++++++.++.+.+.+. +. +..+.....++.+....+|+|.|+|.+++
T Consensus 155 ~~~in~~g~k~~~~i~~~~~~~~i~~l~~iii~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~ 234 (475)
T TIGR03428 155 TTVINCIGVEWMSRVNTIGVTCEIVGVLAVIGVLFTHAQRGPGVVFDTSVTGASPGYYGAFLVSGLMAAYVMVGFGSAGE 234 (475)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeecCCCCCCccHHHHHHHHHHHHHHHhcCcchHHH
Confidence 999999999999999999999998877776666554432111 11 11122234577788888999999999999
Q ss_pred hcccccCCCCCchhHHHHHHHHHHHHHHHHHHHHHhccCCCC--CCCCChHHHHHH-HhCchHHHHHHHHHHHHHHHHHH
Q 007943 286 LGEEVKNPGRDIPIGLIGSMVITITVYCVLSATLCLMQPYSQ--IDVDAPFTLAFQ-AVGMNWAKYIVALGALKGMTTVL 362 (584)
Q Consensus 286 ~a~E~k~p~r~~p~ai~~~~~~~~i~y~l~~~~~~~~~~~~~--~~~~~p~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~ 362 (584)
++||+|||+|++|||+..++.++.++|.+..+......+..+ ...+++...++. ..+.++.. .+....+++.+++.
T Consensus 235 ~aeE~knP~r~iPrai~~s~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~-~~~~~~~i~~~~~~ 313 (475)
T TIGR03428 235 LSEETKNPRRVAPRTILTALSVSALGGGLMILGALMAAPSLTDGRLAAEGLPYVLSAVLDSPWGT-VLLVDVAIAILVCT 313 (475)
T ss_pred HHHHhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHhhcCCCchHHHHHHHhCcHhHH-HHHHHHHHHHHHHH
Confidence 999999999999999999999998888877777665554321 111222333333 45555544 44455677888999
Q ss_pred HHHHhhhHHHHHHHHhcCCCc--hhhhcccCccccchHHHHHHHHHHHHHHHh-----hcHHHHHHHHHHHHHHHHHHHH
Q 007943 363 LANVIGQARYFTHIGRTHMAP--PFLAAINGKTGTPVNATVVMSLANSVVAFF-----TSLDVLANLLSISTLFIFSLVA 435 (584)
Q Consensus 363 ~~~~~~~sR~l~~~ardg~lP--~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~~~~~ 435 (584)
++...+.||++|++||||.+| ++|+|+|||+++|++|+++.++++.++.++ ..|+.+.++++.+..++|.+..
T Consensus 314 ~~~~~~~sR~~~a~Ardg~lP~s~~~~~v~~r~~tP~~A~~l~~~i~~~~~~i~~~~~~af~~l~s~~~~~~~~~Y~~~~ 393 (475)
T TIGR03428 314 LAIQTAGSRLMFSMARDGKLPASAQLSRVHPRTGTPILPSIVIGVLCIGILLINVGNSALFATLASVCIVLIYLAYLLVT 393 (475)
T ss_pred HHHHHHHHHHHHHHHhcCCCcchHHhcccCCCCCCcHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 489999999999999999999998776665 3688999999999999999999
Q ss_pred HHHHhhhhhc-C---CCCCccchhHHHHHHHHHHHHHhHhhhhccccCCCcchhhHHHHHHHHHHHHHhhhhhccCCC
Q 007943 436 LALLVRRYYV-A---GETSECDQKKLIVFLALIISSSIASSAYWATSDNGWIGYIVTVPVWFLATMGLQLTVKEARKP 509 (584)
Q Consensus 436 ~~~i~~r~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (584)
++.+.+|+|. | +..++.+ |++++.+ ..+++++++|.++..+.+++|+..+.+
T Consensus 394 ~~~l~~~~~~~~~~~~~~~~g~---------------------f~lg~~g-~~vn~~a~~~~~~~~v~~~~P~~~~~~ 449 (475)
T TIGR03428 394 VPLLLRRLRGWPRGDQTDPAGL---------------------FSLGRWG-LPVNILAVVYGALMVVNLSWPRPEVYD 449 (475)
T ss_pred HHHHHHHHhccCCccCCCCCCC---------------------CCCchhH-HHHHHHHHHHHHHHHHHHHCCCCCCCC
Confidence 8888777653 1 1112222 5666543 478999999999999999999765443
No 26
>PRK11021 putative transporter; Provisional
Probab=100.00 E-value=9.5e-49 Score=410.21 Aligned_cols=398 Identities=17% Similarity=0.224 Sum_probs=321.7
Q ss_pred cCHHHHHHHHHHHhhhhhhHHccHHhHhhccCchHHHHHHHHHHHHHHHHHHHHhhhhccccCCchhhhHHHHhchHHHH
Q 007943 73 LNWWDLIWFGIGAVMGAGIFVLTGEAARNFAGPAVIISYLISGISALLSVLCYTEFSVELPVAGGSFAYLRVELGDFVAY 152 (584)
Q Consensus 73 l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ii~~l~~~~~~~~~~el~~~~P~~Gg~y~~~~~~~g~~~g~ 152 (584)
+|.|+..++.+++++|+|+|..++..+.. +||..+++|++++++.++.+++++|+++++|++||.|.|+++.+||.+||
T Consensus 1 ~g~~~~~~l~~g~~IGsGif~~~g~~~~~-aG~~~~~~~~i~~~~~~~~al~~aEl~s~~P~aGG~y~y~~~~~G~~~gf 79 (410)
T PRK11021 1 LGLWQGIGLLSTSLLGTGVFAVPALAALV-AGNNSLWAWPLLILLIFPIAIVFARLGRHFPHAGGPAHFVGMAFGPRLGR 79 (410)
T ss_pred CcHHHHHHHHHHHHHhhHHHHhHHHHHHh-cCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHhHHHHhCchhHH
Confidence 57899999999999999999999999887 89999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcceeccccccccCcchhHHHHHHHHHHHHHhccchhHHHHHHHHH
Q 007943 153 IAAGNILFEYVVSGASVARSWTSYFATLCNHDPGSFRIHVSSVAEDYSHLDPIAVIVSFFVCVGACLSMKGSSRFNSVAT 232 (584)
Q Consensus 153 ~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 232 (584)
.+||.+++.+....++.......++...++.+. +. ...+.++++++.+.+|++|+|..+|++.++.
T Consensus 80 ~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~------------~~~~~~~~~~~~~~ln~~Gv~~~~~~~~~~~ 145 (410)
T PRK11021 80 VTGWLFLSVIPVGLPAALQIAAGFGQALFGWSS--WQ------------LLLAELLTLALLWLLNLRGASSSANLQTVIA 145 (410)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCC--ch------------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 999999988777666665556677776654321 10 1255667778889999999999999999887
Q ss_pred HHHHHHHHHHHHHhhcccccCCC--CCCCCCchhHHHHHHHHHHHhhchhhhhhhhcccccCCCCCchhHHHHHHHHHHH
Q 007943 233 IVHIVILIFILITGLTQANTANY--AIFAPNGVRGILKASAVLFFAYVGFDGVATLGEEVKNPGRDIPIGLIGSMVITIT 310 (584)
Q Consensus 233 ~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~r~~p~ai~~~~~~~~i 310 (584)
.+.+..+..+.. ....+..++ .+..+.++.++..++..++|+|.|+|.+++++||+|||+||+|||+..+...+++
T Consensus 146 ~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~k~iPrAi~~~~~~~~~ 223 (410)
T PRK11021 146 LLIVALVVAIWW--AGDIKPADIPFPAPGSIEWSGLFAALGVMFWCFVGIEAFAHLASEFKNPERDFPRALMIGLLLAGL 223 (410)
T ss_pred HHHHHHHHHHHH--HcCCchhcCCCCCCCCccHHHHHHHHHHHHHHHhcHHHHHhhHHhccCccccccHHHHHHHHHHHH
Confidence 655443332221 112222222 2234457788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCCC-CCCChHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCchhhhcc
Q 007943 311 VYCVLSATLCLMQPYSQI-DVDAPFTLAFQAVGMNWAKYIVALGALKGMTTVLLANVIGQARYFTHIGRTHMAPPFLAAI 389 (584)
Q Consensus 311 ~y~l~~~~~~~~~~~~~~-~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~ardg~lP~~~~~~ 389 (584)
+|++...+.....+.++. ..++|..++++...+++...++.+..+++.+++.++.+.+.||++++|||||.+|++|+|+
T Consensus 224 lYil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ii~i~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP~~~~k~ 303 (410)
T PRK11021 224 VYWACTVVVLHFPAYGDKQAAAASLPGIFVQLFGGYALWVICVIGYLACFASVNIYTQSFARLVWSQAREGRPPSYLARL 303 (410)
T ss_pred HHHHHHHHHHhcCCCcchhhccccHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHhh
Confidence 999998887666654443 3456777777765555566777888889999999999999999999999999999999999
Q ss_pred cCccccchHHHHHHHHHHHHHHHh-----hcHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCccchhHHHHHHHHH
Q 007943 390 NGKTGTPVNATVVMSLANSVVAFF-----TSLDVLANLLSISTLFIFSLVALALLVRRYYVAGETSECDQKKLIVFLALI 464 (584)
Q Consensus 390 ~~~~~~P~~ai~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~~~~~~~~~~~~~~~~ 464 (584)
| |+|+|+++++++.+++.+..++ .+++.+.++.+...++.|.+.+++.+++++++
T Consensus 304 ~-~~~tP~~ail~~~~i~~~~~l~~~~~~~~~~~l~~~~~~~~li~y~~~~~a~~~l~~~~------------------- 363 (410)
T PRK11021 304 S-ARGVPVNALNAVLGCCAVSILLIYALGLNLEALIAYANGIFVLIYLLCMLAACKLLKGR------------------- 363 (410)
T ss_pred c-cCCCcHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-------------------
Confidence 9 7799999999998887665443 47888999999999999999999999887541
Q ss_pred HHHHhHhhhhccccCCCcchhhHHHHHHHHHHHHHhhhhhccCCCCccccccccHHHHHHHHHHHHHHhcCChhhHHHHH
Q 007943 465 ISSSIASSAYWATSDNGWIGYIVTVPVWFLATMGLQLTVKEARKPKMWGVPLLPWLPSACIAVNVFVMGSVDGQSFVRFM 544 (584)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (584)
.|++|.++++.+++++...++..+..
T Consensus 364 ----------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~-- 389 (410)
T PRK11021 364 ----------------------------------------------------YRPLAVLGCLLCLLLLVMLGWKMLYA-- 389 (410)
T ss_pred ----------------------------------------------------hHHHHHHHHHHHHHHHHHhhHHHHHH--
Confidence 13578888888888888887765332
Q ss_pred HHHHHHHHHHHHHhhhcc
Q 007943 545 IWTFLLLVYYLFVALHAS 562 (584)
Q Consensus 545 ~~~~i~~~~y~~~~~~~~ 562 (584)
.....+.+++.++|||+
T Consensus 390 -~~~~~~~~~~~~~~~~~ 406 (410)
T PRK11021 390 -LIMLALLWLFLPKRKTH 406 (410)
T ss_pred -HHHHHHHHHHHHHhhhh
Confidence 33446667777766555
No 27
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=3.1e-50 Score=405.56 Aligned_cols=425 Identities=21% Similarity=0.310 Sum_probs=361.7
Q ss_pred cccccccccCHHHHHHHHHHHhhhhhhHHccHHhHhhccCch--HHHHHHHHHHHHHHHHHHHHhhhhccccCCchhhhH
Q 007943 65 SEHEMKKNLNWWDLIWFGIGAVMGAGIFVLTGEAARNFAGPA--VIISYLISGISALLSVLCYTEFSVELPVAGGSFAYL 142 (584)
Q Consensus 65 ~~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~--~~~~~ii~~l~~~~~~~~~~el~~~~P~~Gg~y~~~ 142 (584)
++.+++|+++.+....+.+++++|+|+|..|..+..+ +|+. ++..|+..++++..-+++|+||++.+|++||.|.|.
T Consensus 6 ~~~~~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~-~gsvg~sL~iWv~~gi~s~~galcyaELGT~ipksGgd~ayi 84 (479)
T KOG1287|consen 6 EEVQLKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLAN-TGSVGLSLIIWVFCGIISIIGALCYAELGTSIPKSGGDYAYI 84 (479)
T ss_pred ccccccceeeeecceeEEEEeeEecccccCcHHHHHc-CCchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcchhhH
Confidence 4456889999999999999999999999999999988 6663 677899999999999999999999999999999999
Q ss_pred HHHhchHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-HHHHccCCCCCcceeccccccccCcchhHHHHHHHHHHHHHhcc
Q 007943 143 RVELGDFVAYIAAGNILFEYVV-SGASVARSWTSY-FATLCNHDPGSFRIHVSSVAEDYSHLDPIAVIVSFFVCVGACLS 220 (584)
Q Consensus 143 ~~~~g~~~g~~~g~~~~l~~~~-~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 220 (584)
.+++||.+||...|.-++.... ..+..+..+++| ++..++. +.+ |. .....++.+++++++.+|+.+
T Consensus 85 ~~afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp~--c~~-------p~--~~~~lla~~~l~~lt~~n~~~ 153 (479)
T KOG1287|consen 85 SEAFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFPL--CDV-------PR--VASKLLAAALLVLLTLINSFS 153 (479)
T ss_pred HHHhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCCC--CCC-------ch--HHHHHHHHHHHHHHHHHhhhh
Confidence 9999999999999976666554 459999999999 5555552 111 11 113478889999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhccc---ccCCCCCC--C--CCchhHHHHHHHHHHHhhchhhhhhhhcccccCC
Q 007943 221 MKGSSRFNSVATIVHIVILIFILITGLTQA---NTANYAIF--A--PNGVRGILKASAVLFFAYVGFDGVATLGEEVKNP 293 (584)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~--~--~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p 293 (584)
+|+..++|.+++..|++++.++++.++... +.+|+... . ..+...+..++...+|+|.|||...+.+||+|||
T Consensus 154 V~~a~~vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~f~g~~~~~g~i~lafysglfa~~GWd~lN~vteEiknP 233 (479)
T KOG1287|consen 154 VKWATRVQIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSEFEGSDTDVGNIALAFYSGLFAFSGWDYLNYVTEEIKNP 233 (479)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhchheeEecccccccccccccCcCchHHHHHHHHHhhhcccCchhhccchHhhcCc
Confidence 999999999999999999999999988743 33332211 1 1234457889999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCChHH-HHHHHhCchHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 007943 294 GRDIPIGLIGSMVITITVYCVLSATLCLMQPYSQIDVDAPFT-LAFQAVGMNWAKYIVALGALKGMTTVLLANVIGQARY 372 (584)
Q Consensus 294 ~r~~p~ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~p~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~ 372 (584)
+||+|||+..++.++++.|++.+++...+++.|++..++... +..+..++.+. +++.+.+.++.+++.|+.+++.||+
T Consensus 234 ~ktLP~Ai~isi~lvt~iYil~NvAy~~vls~~e~l~S~aVav~Fa~~~~G~~~-~~ip~~ValS~~G~~n~~ifs~SR~ 312 (479)
T KOG1287|consen 234 RRTLPRAILISIPLVTVIYVLVNVAYFTVLSPDEILSSDAVAVTFADRILGVFA-WAIPFSVALSLIGSLNSVIFSSSRL 312 (479)
T ss_pred cccchHHHHHhhHHHHHHHHHhHhheeEecCHHHhcccchHHHHHHHHhccchH-HHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 999999999999999999999999999999999986555444 44446666666 9999999999999999999999999
Q ss_pred HHHHHhcCCCchhhhcccCccccchHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCcc
Q 007943 373 FTHIGRTHMAPPFLAAINGKTGTPVNATVVMSLANSVVAFFTSLDVLANLLSISTLFIFSLVALALLVRRYYVAGETSEC 452 (584)
Q Consensus 373 l~~~ardg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~~~~ 452 (584)
++++||+|++|+.|+.+|++..+|..++++++..+++..+.++++.+++..++...+.+.+.+.+++++|+|+|+.+||.
T Consensus 313 ~~~~areG~LP~~~s~i~~~~~TP~~allf~~~~~i~~~~~~d~~~LIny~sf~~~l~~~l~~~gll~lR~k~p~~~rPi 392 (479)
T KOG1287|consen 313 FYAGAREGHLPAFFSMISVRRFTPRPALLFSGLLSIVLSLIGDFDQLINYVSFAYWLFRGLSMAGLLWLRWKHPPLPRPI 392 (479)
T ss_pred HHHHHHccCccHHHHhhcCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCE
Confidence 99999999999999999988889999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHhHhhhhccccCCCcchhhHHHHHHHHHHHHHhhhhhc
Q 007943 453 DQKKLIVFLALIISSSIASSAYWATSDNGWIGYIVTVPVWFLATMGLQLTVKE 505 (584)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (584)
|...+.+.+.++++..+.+..++...+.. ..+...+.+.+..+++.+.+.
T Consensus 393 Kvpl~~p~~~~~~~i~lvvip~~~~~~~~---~~ig~~i~l~G~~~Y~~~i~~ 442 (479)
T KOG1287|consen 393 KVPLFIPILFLLICIFLVVIPIISDFPVE---TLIGIGIILSGVPFYFLFIHW 442 (479)
T ss_pred eeeeehHHHHHHHHHHHhheeeeecCCcc---chhHHHHHHHhhhhheEEEEe
Confidence 99999999999999999888888764432 233344444455555555433
No 28
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=100.00 E-value=6e-49 Score=420.43 Aligned_cols=442 Identities=16% Similarity=0.212 Sum_probs=342.6
Q ss_pred cccccccccCHHHHHHHHHHHhh-hhhhHHccHHhHhhccCch-HHHHHHHHHHHHHHHHHHHHhhhhccccCCchhhhH
Q 007943 65 SEHEMKKNLNWWDLIWFGIGAVM-GAGIFVLTGEAARNFAGPA-VIISYLISGISALLSVLCYTEFSVELPVAGGSFAYL 142 (584)
Q Consensus 65 ~~~~l~r~l~~~~~~~~~~~~~i-g~gi~~~~~~~~~~~~G~~-~~~~~ii~~l~~~~~~~~~~el~~~~P~~Gg~y~~~ 142 (584)
+++++||+++.++.++++++.+. ..|++...+..... +||. .+++|++++++.++.+++++||++++|++||.|+|+
T Consensus 6 ~~~~l~r~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~Gp~~~i~~~~i~gi~~l~~~~~~aEl~s~~P~~Gg~y~~~ 84 (482)
T TIGR00907 6 YKPELKREFSLWSIFGFAFSISNSWTGISTTYNYGLSS-GGAMSIVWGWIIAGAGSICIALSLAELSSAYPTSGGQYFWS 84 (482)
T ss_pred CcceeecccchhHHHHHHHHHHHHHHHHHHHHHHhhhc-CCccchhHHHHHHHHHHHHHHHHHHHHHhhCCCCccHHHHH
Confidence 77889999999999999999663 37888888777766 8885 899999999999999999999999999999999999
Q ss_pred HHHhc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCC--cceeccccccccCcchhHHHHHHHHHHHH
Q 007943 143 RVELG----DFVAYIAAGNILFEYVVSGASVARSWTSYFATLCNHDPGS--FRIHVSSVAEDYSHLDPIAVIVSFFVCVG 216 (584)
Q Consensus 143 ~~~~g----~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (584)
++.+| +..||++||.+++.+....++.....+.++........+. +. ++. .....+.++++++.+++
T Consensus 85 ~~~~g~~~g~~~~f~~gW~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~------~~~-~~~~~i~~~~~~~~~~i 157 (482)
T TIGR00907 85 AKLAPPRQMPFASWMTGWFNLAGQVAGTASTDLSVAQLILGIVSLTTPGREYI------PTR-WHIFGIMIGIHLIHALI 157 (482)
T ss_pred HHhcccccccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc------ccC-chhhhhHHHHHHHHHHH
Confidence 99886 6779999999999999999999888888887654322111 11 111 11235666778889999
Q ss_pred HhccchhHHHHHHHHHHHHHHHHHHHHHHhhccccc----CC--CC-------CCCCCchhHHHHHHHHHHHhhchhhhh
Q 007943 217 ACLSMKGSSRFNSVATIVHIVILIFILITGLTQANT----AN--YA-------IFAPNGVRGILKASAVLFFAYVGFDGV 283 (584)
Q Consensus 217 ~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~--~~-------~~~~~g~~~~~~~~~~~~~~~~G~e~~ 283 (584)
|++|+|..++++.+..+++++.++++++..+...+. .+ +. ++.++++ +++.++..+.|+|.|+|.+
T Consensus 158 n~~g~k~~~~~~~~~~~~~i~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~g~-~~~~~~~~~~fsf~G~e~~ 236 (482)
T TIGR00907 158 NSLPTKWLPRITSSAAYWSLLGFLTICITLLACKSPKFNDGKFVFTNFNNSTGGWKPGGF-AFLLGLLNPAWSMTGYDGT 236 (482)
T ss_pred HHhhHhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhhhheeeeCCCCCcCCCch-hhhhhhhhhHHHhcCcchh
Confidence 999999999999999988888777555444332211 11 11 1223333 4667777889999999999
Q ss_pred hhhcccccCCCCCchhHHHHHHHHHHHHHHHHHHHHHhccC-CCCC-CC--CChHHHHHHH-hCchHHHHHHHHHHHHHH
Q 007943 284 ATLGEEVKNPGRDIPIGLIGSMVITITVYCVLSATLCLMQP-YSQI-DV--DAPFTLAFQA-VGMNWAKYIVALGALKGM 358 (584)
Q Consensus 284 ~~~a~E~k~p~r~~p~ai~~~~~~~~i~y~l~~~~~~~~~~-~~~~-~~--~~p~~~~~~~-~g~~~~~~~~~~~~~~~~ 358 (584)
++++||+|||+|++|||+..++.+..+++++..+......+ .++. +. ++|+.+++.. .|.++...++.+..+++.
T Consensus 237 ~~~a~E~knP~r~iP~Ai~~s~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~ 316 (482)
T TIGR00907 237 AHMAEEIENPEVVGPRAIIGAVAIGIVTGFCFNIVLFFSMGDIDSLISSTTGQPIAQIFYNALGNKAGAIFLLCLILVTS 316 (482)
T ss_pred hHHHHhcCChhhhcCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhcCCCCChHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence 99999999999999999999998877766555554433332 2222 22 2588888775 576677778888888999
Q ss_pred HHHHHHHHhhhHHHHHHHHhcCCCc--hhhhcccCccccchHHHHHHHHHHHHHHHh-----hcHHHHHHHHHHHHHHHH
Q 007943 359 TTVLLANVIGQARYFTHIGRTHMAP--PFLAAINGKTGTPVNATVVMSLANSVVAFF-----TSLDVLANLLSISTLFIF 431 (584)
Q Consensus 359 ~~~~~~~~~~~sR~l~~~ardg~lP--~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~ 431 (584)
+++.++.+++.||++++|||||.+| ++|+|+|||+|+|++|++++.+++.++.+. ..++.+.++.+.+.++.|
T Consensus 317 ~~~~~~~~~~~sR~l~a~ardg~lP~~~~f~~v~~~~~~P~~ai~~~~~i~~~~~~~~~~~~~~f~~l~~~~~~~~~i~y 396 (482)
T TIGR00907 317 FFCAITCMTANSRMIYAFSRDGGLPFSPLWSRVNPRTQVPLNAVWLSAVWIILIGLLGLGSSTAFQAIFSVCTVALDVSY 396 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcCchHhhceeCCCCCCcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 999999988899999999999998776655 368999999999999999
Q ss_pred HHHHHHHHhhhhhcCCCCCccchhHHHHHHHHHHHHHhHhhhhccccCCCcchhhHHHHHHHHHHHHHhhhhhccCCCCc
Q 007943 432 SLVALALLVRRYYVAGETSECDQKKLIVFLALIISSSIASSAYWATSDNGWIGYIVTVPVWFLATMGLQLTVKEARKPKM 511 (584)
Q Consensus 432 ~~~~~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (584)
++.+.+.+++|++ ++.+||+|. ++.+ ...+.++++|..+.++..++|+..+.+ +
T Consensus 397 ~~~~~~~l~~~~~-~~~~~~f~l-----------------------g~~~-~~~~~~~~~~~~~~~v~~~~P~~~p~~-~ 450 (482)
T TIGR00907 397 VIPIICKLAKGRN-TIAPGPFWL-----------------------GKYG-FFVNAVAVAWTVFSSVLFSFPPVLPVT-P 450 (482)
T ss_pred HHHHHHHHHhcCC-CCCCCCCcC-----------------------Ccch-HHHHHHHHHHHHHHHhheeCCCCCCCC-c
Confidence 9998887655544 444455442 1111 355667888888888888887653322 1
Q ss_pred cccccccHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhhccc
Q 007943 512 WGVPLLPWLPSACIAVNVFVMGSVDGQSFVRFMIWTFLLLVYYLFVALHASY 563 (584)
Q Consensus 512 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~~~ 563 (584)
..||| +.+++++.++++.++|+.++||+.+
T Consensus 451 ---------------------~~~ny-~~~~~~~~~~~~~~~~~~~~r~~~~ 480 (482)
T TIGR00907 451 ---------------------ENMNY-AVVVFAGVLAISLVYWKYKGRKEFT 480 (482)
T ss_pred ---------------------ccCCh-HhHHHHHHHHHHHHHheEeceeecc
Confidence 26788 5667789999999999888887764
No 29
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=100.00 E-value=6.2e-48 Score=410.15 Aligned_cols=414 Identities=15% Similarity=0.248 Sum_probs=336.8
Q ss_pred cccCHHHHHHHHHHHhhhhhhHHccHHhHhhccCch-HHHHHHHHHHHHHHHHHHHHhhhhccccC-CchhhhHHHHhch
Q 007943 71 KNLNWWDLIWFGIGAVMGAGIFVLTGEAARNFAGPA-VIISYLISGISALLSVLCYTEFSVELPVA-GGSFAYLRVELGD 148 (584)
Q Consensus 71 r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ii~~l~~~~~~~~~~el~~~~P~~-Gg~y~~~~~~~g~ 148 (584)
|++|.++.+++.++++||+|+|..++..+.. +||. .+++|+++++..++.+++++||++++|++ ||.|+|+++.+||
T Consensus 1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~-ag~~~~l~~w~i~~~~~~~~al~~aeL~s~~P~~gGG~y~y~~~~fG~ 79 (468)
T TIGR03810 1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAG-AAAGAVLIGWVITGVGMLALAFSFQNLANKKPELDGGVYSYAKAGFGP 79 (468)
T ss_pred CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHh-hchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHcCc
Confidence 6899999999999999999999999998876 8887 78899999999999999999999999986 5999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcceeccccccccCcchhHHHHHHHHHHHHHhccchhHHHHH
Q 007943 149 FVAYIAAGNILFEYVVSGASVARSWTSYFATLCNHDPGSFRIHVSSVAEDYSHLDPIAVIVSFFVCVGACLSMKGSSRFN 228 (584)
Q Consensus 149 ~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 228 (584)
..||++||.+|+++.......+.....++...++..... +.........++++++..+|++|+|..+++|
T Consensus 80 ~~gf~~gw~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~----------~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~i~ 149 (468)
T TIGR03810 80 FMGFISAWGYWLSAWLGNVAYATLLFSTLGYFFPIFGGG----------NNPPSIIGASVLLWCVHFLVLRGVEGAAFIN 149 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCC----------CcHHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 999999999999998877777666666666655421100 0000124556667778899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccCCCCC---------C-CCCchhHHHHHHHHHHHhhchhhhhhhhcccccCCCCCch
Q 007943 229 SVATIVHIVILIFILITGLTQANTANYAI---------F-APNGVRGILKASAVLFFAYVGFDGVATLGEEVKNPGRDIP 298 (584)
Q Consensus 229 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---------~-~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~r~~p 298 (584)
.+.+.+|++.++++++.++...+.+++.+ + ..+.+.++..++...+|+|.|+|.+++++||+|| +||+|
T Consensus 150 ~i~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~k~-~k~ip 228 (468)
T TIGR03810 150 TITTIAKLVPLFVFIVIGIFAFKGDTFTNDFWGNANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARAEK-RSDVG 228 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcHhhcCccccccccccCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhhccC-cccch
Confidence 99999999988877776654332222111 0 1112445667888899999999999999999998 79999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhccCCCCCCC-CCh-HHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 007943 299 IGLIGSMVITITVYCVLSATLCLMQPYSQIDV-DAP-FTLAFQAVGMNWAKYIVALGALKGMTTVLLANVIGQARYFTHI 376 (584)
Q Consensus 299 ~ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~~-~~p-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~ 376 (584)
|++..+...+.++|++..++.....|.++++. ++| ...+++...+++...++.+.++++.+++.++++.+.||++++|
T Consensus 229 ~ai~~~~~~v~~lY~l~~~~~~g~~~~~~l~~~~~p~~~~~~~~~~g~~~~~~i~~~~~is~~~~~~~~~~~~sR~~~a~ 308 (468)
T TIGR03810 229 KATVIGLIGVLAIYVLVSVLSYGIMTQAQLAGLKNPSMAYVLEHMVGTWGAVLINIGLIISILGAWLSWTLLPAEIPLLM 308 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhcCCCchHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888888877643 445 6777777778899999999999999999999999999999999
Q ss_pred HhcCCCchhhhcccCccccchHHHHHHHHHHHHHHHh-----hcHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCc
Q 007943 377 GRTHMAPPFLAAINGKTGTPVNATVVMSLANSVVAFF-----TSLDVLANLLSISTLFIFSLVALALLVRRYYVAGETSE 451 (584)
Q Consensus 377 ardg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~~~ 451 (584)
||||.+|++|+|+| |+|+|+++++++.+++.++.+. ..++.+.++++...++.|.+.+++.+++|+|+++ +
T Consensus 309 ardg~lP~~f~k~~-~~~tP~~al~~~~~i~~~~~l~~~~~~~~~~~l~~~~~~~~li~y~~~~~~~~~l~~~~~~-~-- 384 (468)
T TIGR03810 309 AKDKLMPKYFGKEN-ANGAPTNALWLTNGLIQIFLLTTLFSEQAYNFAISLATSAILVPYLWSAAYQVKLSWRGGQ-E-- 384 (468)
T ss_pred HhCCCccHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-c--
Confidence 99999999999999 7899999999998887655443 4688999999999999999999999998876421 0
Q ss_pred cchhHHHHHHHHHHHHHhHhhhhccccCCCcchhhHHHHHHHHHHHHHhhhhhccCCCCccccccccHHHHHHHHHHHHH
Q 007943 452 CDQKKLIVFLALIISSSIASSAYWATSDNGWIGYIVTVPVWFLATMGLQLTVKEARKPKMWGVPLLPWLPSACIAVNVFV 531 (584)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 531 (584)
.+++++ ++++.++.+.++++
T Consensus 385 --------------------------------------------------------~~~~~~----~~~~~l~~~~~~~~ 404 (468)
T TIGR03810 385 --------------------------------------------------------RGRRKQ----LLIGLVALLYAVWL 404 (468)
T ss_pred --------------------------------------------------------cchhhh----HHHHHHHHHHHHHH
Confidence 001111 45777888888888
Q ss_pred HhcCChhhHHHHHHHHHHHHHHHHHHhhh
Q 007943 532 MGSVDGQSFVRFMIWTFLLLVYYLFVALH 560 (584)
Q Consensus 532 ~~~~~~~~~~~~~~~~~i~~~~y~~~~~~ 560 (584)
+....+.......+.+++|+..|+..+|+
T Consensus 405 ~~~~~~~~~~~~~~~~~~g~~~y~~~~~~ 433 (468)
T TIGR03810 405 IYAAGLKYLLLSAILYAPGIYFYARARKE 433 (468)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888877777777788888888654443
No 30
>TIGR00930 2a30 K-Cl cotransporter.
Probab=100.00 E-value=4.3e-46 Score=416.45 Aligned_cols=371 Identities=13% Similarity=0.196 Sum_probs=306.2
Q ss_pred ccccccCHHHHHHHH-HHHhhhhhhHHccHHhHhhccCch-HHHHHHHHHHHHHHHHHHHHhhhhc-cccCCchhhhHHH
Q 007943 68 EMKKNLNWWDLIWFG-IGAVMGAGIFVLTGEAARNFAGPA-VIISYLISGISALLSVLCYTEFSVE-LPVAGGSFAYLRV 144 (584)
Q Consensus 68 ~l~r~l~~~~~~~~~-~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ii~~l~~~~~~~~~~el~~~-~P~~Gg~y~~~~~ 144 (584)
+.+|++|+++.+++- +++++|+|+|..++.++++ +|.. +++.|+++++++++++++++|+++. .|++||.|.|++|
T Consensus 73 ~~~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~-aG~~~sll~~~la~~vtlltaLS~seiaTng~p~aGG~Y~yisr 151 (953)
T TIGR00930 73 AGAVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQ-AGIGLSLLIILLCCCVTTITGLSMSAIATNGVVKGGGAYYLISR 151 (953)
T ss_pred CCCcccceeEeeeHhhhHhHheeeeeeeHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHH
Confidence 446889999999998 9999999999999999988 7876 8889999999999999999999998 9999999999999
Q ss_pred HhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcceeccccccccCcchhHHHHHHHHHHHHHhccchhH
Q 007943 145 ELGDFVAYIAAGNILFEYVVSGASVARSWTSYFATLCNHDPGSFRIHVSSVAEDYSHLDPIAVIVSFFVCVGACLSMKGS 224 (584)
Q Consensus 145 ~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 224 (584)
.+||.+|+.+||.+++++.+..+.++.++++|+..+++...... . ....+...+++++++++++++|+.|+|..
T Consensus 152 alGp~~Gf~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~~~--~----~~~~~~~~iia~i~l~ll~~In~~Gvk~~ 225 (953)
T TIGR00930 152 SLGPEFGGSIGLIFAFANAVAVAMYVVGFAETVLDLLRENGSKI--M----VDPINDIRIYGTVTVVVLLGISFAGMEWE 225 (953)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc--c----cCccccchHHHHHHHHHHHHHHHhhHHHH
Confidence 99999999999999999999999999999999999875321100 0 01111134788888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccC---------------CCCCCCCCchhHHHHHHHHHHHhhchhhhhhhhccc
Q 007943 225 SRFNSVATIVHIVILIFILITGLTQANTA---------------NYAIFAPNGVRGILKASAVLFFAYVGFDGVATLGEE 289 (584)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---------------~~~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E 289 (584)
+|+|.++++++++.++.+++.++...... |+.+..+.+..++...+...+++|.|+|+.++++||
T Consensus 226 ak~q~vl~vi~ll~ll~~iig~~~~~~~~~~~g~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~A~tGi~agan~sgE 305 (953)
T TIGR00930 226 NKAQVLFLVIVLLSILNIFVGTIIPAFDKPAKGFFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFPSVTGILAGANISGD 305 (953)
T ss_pred HHHHHHHHHHHHHHHHHHHheeeecCCCCCccceeeccchhhhhccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999998887776654321100 111111222234666677778899999999999999
Q ss_pred ccCCCCCchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCC-CC------------------hHHHH----HH-HhCchH
Q 007943 290 VKNPGRDIPIGLIGSMVITITVYCVLSATLCLMQPYSQIDV-DA------------------PFTLA----FQ-AVGMNW 345 (584)
Q Consensus 290 ~k~p~r~~p~ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~~-~~------------------p~~~~----~~-~~g~~~ 345 (584)
+|||+|++|||++.++.+++++|++.++++..+.+.+.... +. |.... +. ......
T Consensus 306 lKnP~r~IPratl~ai~i~~vlYllv~~~~~~~~~~d~~~~~~~~l~~~~~g~~~f~~~~~~p~~~gL~~~~~~~~~~~~ 385 (953)
T TIGR00930 306 LKDPQKAIPKGTLLAILTTTVVYLGSVVLFGACVVRDATGDKNDTLVTNCTSAACFSECAHNTCSYGLMNNLQVMSLVSP 385 (953)
T ss_pred ccChhhhhHHHHHHHHHHHHHHHHHHHHHHHccccHhhhcccchhhhcccccchhhhhhcccchhhhhcchHHHHhhhhh
Confidence 99999999999999999999999999988777776544321 11 11111 11 111123
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCc--hhhhcccCccccchHHHHHHHHHHHHHHHhhcHHHHHHHH
Q 007943 346 AKYIVALGALKGMTTVLLANVIGQARYFTHIGRTHMAP--PFLAAINGKTGTPVNATVVMSLANSVVAFFTSLDVLANLL 423 (584)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~ardg~lP--~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~~~~~~l~~~~ 423 (584)
...++.++++++.+++.++++++++|++++|||||.+| ++|+|+|+|+++|++|++++++++.++.++++++.+..+.
T Consensus 386 ~~~lI~ig~~~stlss~la~l~~asRvl~AmArDg~lP~l~~fakv~~k~~tP~~Alllt~iIa~l~ili~~l~~ia~li 465 (953)
T TIGR00930 386 FPPLITAGIFSATLSSALASLVSAPRLFQALCKDNIYPFLQFFGKGYGKNGEPLRAYLLTAFIAEGFILIAELNTIAPII 465 (953)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhcccCCCCCCcHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 45788889999999999999999999999999999999 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhc
Q 007943 424 SISTLFIFSLVALALLVRRYYV 445 (584)
Q Consensus 424 ~~~~~~~~~~~~~~~i~~r~~~ 445 (584)
+..++++|+++++++++.|.++
T Consensus 466 s~~fLl~Y~lvnla~~~l~~~~ 487 (953)
T TIGR00930 466 SNFFLASYALINFSCFHASLLR 487 (953)
T ss_pred HHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999888664
No 31
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=100.00 E-value=3.2e-45 Score=390.26 Aligned_cols=435 Identities=18% Similarity=0.225 Sum_probs=320.7
Q ss_pred cccCHHHHHHHHHHHhhhhhhHHccHHhHhhccCchHHHHHHHHHHHH-HHHHHHHHhhhhccccCCchhhhHHHHhchH
Q 007943 71 KNLNWWDLIWFGIGAVMGAGIFVLTGEAARNFAGPAVIISYLISGISA-LLSVLCYTEFSVELPVAGGSFAYLRVELGDF 149 (584)
Q Consensus 71 r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ii~~l~~-~~~~~~~~el~~~~P~~Gg~y~~~~~~~g~~ 149 (584)
|+++.+++.++.+..+++..- .+.. +. .|+..++.|++++++. ++.+++++||++++|++||.|.|+++.+||.
T Consensus 1 ~~~~~~~l~~~~~~~v~~~~~--~~~~--a~-~G~~~~~~~~i~~~~~~ip~al~~aEL~~~~P~~GG~y~~~~~a~G~~ 75 (474)
T TIGR03813 1 KKLTVVTLAIMNITAVVSLRG--LPAE--AE-YGLSAAFYYLFAAIFFLVPVSLVAAELATAWPEKGGVFRWVGEAFGAR 75 (474)
T ss_pred CcccHHHHHHHHHHHHHHhhc--chHH--HH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCceeeHhhhcChh
Confidence 458999999999888865322 2222 23 7888889999999876 5899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcceeccccccccCcchhHHHHHHHHHHHHHhccchhHHHHHH
Q 007943 150 VAYIAAGNILFEYVVSGASVARSWTSYFATLCNHDPGSFRIHVSSVAEDYSHLDPIAVIVSFFVCVGACLSMKGSSRFNS 229 (584)
Q Consensus 150 ~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 229 (584)
+||..||.+|+++....+......+..+........ . .+..+.+......+.+++.++.+.+|++|+|..++++.
T Consensus 76 ~gf~~gw~~w~~~~~~~p~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~l~~~~~~~~in~~gv~~~~~i~~ 150 (474)
T TIGR03813 76 WGFLAIFMLWAQVTIWFPTVLTFGAVSLAFIGPEAT--V---DESLAGNKLYVLVSVLFVYWLATFIALRGVAAFTKVAK 150 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc--c---CcccccccHHHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence 999999999999987666544433333332221110 0 00111111111234556666788899999999999998
Q ss_pred HHHHH-HHHHHHHHHHHhhcc---cccC----CCCCCCCC--chhHHHHHHHHHHHhhchhhhhhhhcccccCCCCCchh
Q 007943 230 VATIV-HIVILIFILITGLTQ---ANTA----NYAIFAPN--GVRGILKASAVLFFAYVGFDGVATLGEEVKNPGRDIPI 299 (584)
Q Consensus 230 ~~~~~-~~~~~~~~~i~~~~~---~~~~----~~~~~~~~--g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~r~~p~ 299 (584)
+...+ +++.++++++.++.. ++.. ++.++.|+ ++..+..+ ...+|+|.|+|.++..+||+|||+|++||
T Consensus 151 ~~~~~~~ii~~~~~ii~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~af~G~e~~~~~a~E~knP~r~iPr 229 (474)
T TIGR03813 151 WGGIVGTIIPAAILVILGISYLLTGGESQIPLRWDDAFPDFTNFDNVVLA-ASIFLFYAGMEMNAVHVKDVDNPDKNYPI 229 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCHHHhCCCccccccHHHH-HHHHHHHhchhHhHHHHHhccCcccchhH
Confidence 87554 344444444433321 1111 11122232 23333333 24578999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCh----HHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 007943 300 GLIGSMVITITVYCVLSATLCLMQPYSQIDVDAP----FTLAFQAVGMNWAKYIVALGALKGMTTVLLANVIGQARYFTH 375 (584)
Q Consensus 300 ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~p----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~ 375 (584)
|+..+..+++++|++..+++....|+++...+++ +.+..+..|.++...++.+...++.+++.++.+.+.||++++
T Consensus 230 Ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~l~~~~~~~~~~sR~~~a 309 (474)
T TIGR03813 230 AILIAALGTVLIFVLGTLAIAFIIPREDISLTQSLLVAFDNAFHWAGLSWLGPILAFALAIGVLAGVVTWVAGPSSGMLA 309 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCHhhccccccHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988888888754433 344455567778888888888889999999999999999999
Q ss_pred HHhcCCCchhhhcccCccccchHHHHHHHHHHHHHHHh--------hcHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC
Q 007943 376 IGRTHMAPPFLAAINGKTGTPVNATVVMSLANSVVAFF--------TSLDVLANLLSISTLFIFSLVALALLVRRYYVAG 447 (584)
Q Consensus 376 ~ardg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~--------~~~~~l~~~~~~~~~~~~~~~~~~~i~~r~~~~~ 447 (584)
+||||.+|++|+|+| |+++|+++++++.+++.++.++ ..++.+.++++...++.|++.+++.+++|+|+|+
T Consensus 310 ~ardg~lP~~~~kv~-k~~~P~~a~~~~~~~~~~l~~~~~~~~s~~~~f~~l~~~~~~~~~i~y~~~~~a~i~lr~~~~~ 388 (474)
T TIGR03813 310 VAKAGYLPTFFQKTN-KNGMPIHIMFVQGIAVSVLSVLFVVMPSVQAAFQILSQLTVILYLVMYLLMFASAIYLRYSQPD 388 (474)
T ss_pred HhhcCCCCHHHhccC-CCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999 8899999999999876543322 2478889999999999999999999999988888
Q ss_pred CCCccchhHHHHHHHHHHHHHhHhhhhccccCCCcchhhHHHHHHHHHHHHHhhhhhccCCCCccccccccHHHHHHHHH
Q 007943 448 ETSECDQKKLIVFLALIISSSIASSAYWATSDNGWIGYIVTVPVWFLATMGLQLTVKEARKPKMWGVPLLPWLPSACIAV 527 (584)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 527 (584)
.+||+|.+ .++.+.+..+++++++.+..++..+.|+.......
T Consensus 389 ~~rpf~~p---------------------~g~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~---------------- 431 (474)
T TIGR03813 389 RPRPYRIP---------------------GGLAGMWFIGGLGFVGSALAFVLSFIPPSQIGTGS---------------- 431 (474)
T ss_pred CCCCeEec---------------------CCccchhHHHHHHHHHHHHHHheeEeCCcccCCCc----------------
Confidence 77776631 12222346788888888888888888876443322
Q ss_pred HHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhhc
Q 007943 528 NVFVMGSVDGQSFVRFMIWTFLLLVYYLFVALHA 561 (584)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~ 561 (584)
++|| +.+++++.+++..++|+.++||+
T Consensus 432 ------~~ny-~~~~~~~~~~~~~~~~~~~~~~~ 458 (474)
T TIGR03813 432 ------PTRY-VGLLIGLAALFVTAPFLIYARRK 458 (474)
T ss_pred ------hHHH-HHHHHHHHHHHHHHHHHHHHHhc
Confidence 5677 66677777778888888877665
No 32
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=100.00 E-value=5.1e-43 Score=373.77 Aligned_cols=400 Identities=16% Similarity=0.205 Sum_probs=292.0
Q ss_pred ccccCHHHHHHHHHHHhhhhhhHHccHHhHhhccCchHHHHHHHHHHH-HHHHHHHHHhhhhccc-cCCchhhhHHHHhc
Q 007943 70 KKNLNWWDLIWFGIGAVMGAGIFVLTGEAARNFAGPAVIISYLISGIS-ALLSVLCYTEFSVELP-VAGGSFAYLRVELG 147 (584)
Q Consensus 70 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ii~~l~-~~~~~~~~~el~~~~P-~~Gg~y~~~~~~~g 147 (584)
+|+++.++++++.++.+. +++..+. .+. .|...+..+++++++ .++.+++++||++++| ++||.|.|+++.+|
T Consensus 3 ~~~l~~~~~~~~~~~~v~--~~~~~~~--~a~-~G~~~i~~~i~~~l~~~lp~al~~AELas~~p~~~GG~y~wv~~a~G 77 (507)
T TIGR00910 3 AKKLSLFGFFAITASMVL--AVYEYPT--FAT-SGFHLVFFLLLGGILWFIPVALCAAEMATVDGWEEGGIFAWVSNTLG 77 (507)
T ss_pred CcEeeHHHHHHHHHHHHH--HHHhhHH--HHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCeeeehhhccC
Confidence 577999999999998886 3443342 223 677777778887776 6889999999999997 99999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcceeccccccccCcchhHHHHHHHHHHHHHhccchhHHHH
Q 007943 148 DFVAYIAAGNILFEYVVSGASVARSWTSYFATLCNHDPGSFRIHVSSVAEDYSHLDPIAVIVSFFVCVGACLSMKGSSRF 227 (584)
Q Consensus 148 ~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 227 (584)
|.+||.++|.+|+......+.........+....... . ...+.....+..++++++.+++|++|.|..+++
T Consensus 78 ~~~Gf~~~~~~W~~~~~~~~~~~~~~~~~~~y~~~~~--~-------~~~~~~~~~i~~l~i~~~~t~~n~~G~k~~~~i 148 (507)
T TIGR00910 78 ERFGFAAIFFGWFQIAIGFIPMIYFILGALSYILKFP--A-------LNEDPIIKFIAALIIFWALAFSQFGGTKRTAKI 148 (507)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--h-------hccCcHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 9999999999999887655544333333333332211 0 011111122455566778899999999999999
Q ss_pred HHHHHHHHHHH-HHHHHHHhhc---ccccC----CCCCCCCCc-hhHHHHHHHHHHHhhchhhhhhhhcccccCCCCCch
Q 007943 228 NSVATIVHIVI-LIFILITGLT---QANTA----NYAIFAPNG-VRGILKASAVLFFAYVGFDGVATLGEEVKNPGRDIP 298 (584)
Q Consensus 228 ~~~~~~~~~~~-~~~~~i~~~~---~~~~~----~~~~~~~~g-~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~r~~p 298 (584)
+.+.....+.. ++++++++.. .+++. +..++.|+. ..+.+..+...+|+|.|+|.+++++||+|||+|++|
T Consensus 149 ~~i~~~~~~~i~~~ili~l~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~faf~G~E~~a~~a~E~knP~r~~P 228 (507)
T TIGR00910 149 AKAGFFAGILIPAFILFALAAAYFHGGAPIAIEIDSHAFFPDFSKVGTLVVFVAFIGAYMGVEASASHINELENPGRDYP 228 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCccccCCcHHhcCCCcccccHHHHHHHHHHHHhcHHHHHHHHHHccCCccccc
Confidence 98866544443 3333332222 12111 112233321 123344555568999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCChHHHH----HHHhC--chHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 007943 299 IGLIGSMVITITVYCVLSATLCLMQPYSQIDVDAPFTLA----FQAVG--MNWAKYIVALGALKGMTTVLLANVIGQARY 372 (584)
Q Consensus 299 ~ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~p~~~~----~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~ 372 (584)
||++.+.+++.++|.+..+.+....|+++++.+++.... ....+ ..+...++.+..+++.+++.++++++.||+
T Consensus 229 rAi~~~~i~~~~l~~l~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~l~~~~~~i~~~sR~ 308 (507)
T TIGR00910 229 LAMILLMIAAICLDAIGGFSIAAVIPGKEINLSAGVIQTFQTLILHFAHEIEWLVKVIAALIAFGVLAEIASWIVGPSRG 308 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHheecChhhcccchHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988888778888887654433333 33333 256777888888899999999999999999
Q ss_pred HHHHHhcCCCchhhhcccCccccchHHHHHHHHHHHHHHHh---------hcHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 007943 373 FTHIGRTHMAPPFLAAINGKTGTPVNATVVMSLANSVVAFF---------TSLDVLANLLSISTLFIFSLVALALLVRRY 443 (584)
Q Consensus 373 l~~~ardg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~---------~~~~~l~~~~~~~~~~~~~~~~~~~i~~r~ 443 (584)
++++||||.+|++|+|+| |+++|+++++++++++.++.++ ..++.+.++++...++.|++.+++++++|+
T Consensus 309 l~~~ardg~lP~~~~k~n-k~~~P~~a~~~~~~i~~l~~~~~~~~~~~~~~~f~~l~~~~~~~~~i~Y~l~~~a~i~lr~ 387 (507)
T TIGR00910 309 MFAAAQKGLLPAAFAKMN-KHEVPVPLVIIQGIITSIAGAILTFGGGGNNLSFLIAIALTVVIYLCAYFLFFIGYFVLIL 387 (507)
T ss_pred HHHhcccCCcCHHHHhhC-cCCCcHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 8899999999999988765432 135667788889999999999999999999
Q ss_pred hcCCCCCccchhHHHHHHHHHHHHHhHhhhhccccCCCcchhhHHHHHHHHHHHHHhhhhhc
Q 007943 444 YVAGETSECDQKKLIVFLALIISSSIASSAYWATSDNGWIGYIVTVPVWFLATMGLQLTVKE 505 (584)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (584)
|+|+.+|++|.+ .+..+...++++++++.+...++.+.|+.
T Consensus 388 k~p~~~rpf~~p---------------------g~~~~~~i~~~~~~~~~~~~~v~~~~Pp~ 428 (507)
T TIGR00910 388 KHPDLKRTFNIP---------------------GGIGGKLIIAGIGFLLSIFAFFISFLPPA 428 (507)
T ss_pred hcCCCCCCeEec---------------------CCccchhhHHHHHHHHHHHHHheeeeCCC
Confidence 999888877631 11122234566666667777777777655
No 33
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=2.7e-42 Score=369.28 Aligned_cols=379 Identities=34% Similarity=0.517 Sum_probs=325.9
Q ss_pred cccccccccCHHH-HHHHHHHHhhhhhhHHccHHhHhhccCchHHHHHHHHHHHHHHHHHHHHhhhhccccCCchhhhHH
Q 007943 65 SEHEMKKNLNWWD-LIWFGIGAVMGAGIFVLTGEAARNFAGPAVIISYLISGISALLSVLCYTEFSVELPVAGGSFAYLR 143 (584)
Q Consensus 65 ~~~~l~r~l~~~~-~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ii~~l~~~~~~~~~~el~~~~P~~Gg~y~~~~ 143 (584)
++++++|+++.++ ...+..+.++|.|++..++..... + +...++|++++++....+++++|+++++|++||.|.|++
T Consensus 6 ~~~~~~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~-~-~~~~~~~li~~~~~~~~a~~~~el~~~~p~~GG~y~~~~ 83 (466)
T COG0531 6 MSSELKKKLGLFDLLTALGVGSMIGSGIFALPGSAAGL-A-PAAILAWLIAGIIILFLALSYAELSSAIPSAGGAYAYAK 83 (466)
T ss_pred cchhcCCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHh-c-hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeeeehh
Confidence 4566789999999 899999999999999999988765 4 555555999999999999999999999999999999999
Q ss_pred HHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcceeccccccccCcchhHHHHHHHHHHHHHhccchh
Q 007943 144 VELGDFVAYIAAGNILFEYVVSGASVARSWTSYFATLCNHDPGSFRIHVSSVAEDYSHLDPIAVIVSFFVCVGACLSMKG 223 (584)
Q Consensus 144 ~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 223 (584)
+.+||..|+.++|.+++++....+..+.....++...++... .+ ..+......++++++++...+|++|+|.
T Consensus 84 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-------~~~~~~~~~~~~~~~~~~~~ln~~G~~~ 155 (466)
T COG0531 84 RALGPRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPG-LL-------SIGPLLIILIALALIALLTLLNLRGIKA 155 (466)
T ss_pred hhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch-hh-------cCCchHHHHHHHHHHHHHHHHHHhhHHH
Confidence 999999999999999999999999999999998888876421 00 0000124478888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCC-----CCchhHHHHHHHHHHHhhchhhhhhhhcccccCCCCCch
Q 007943 224 SSRFNSVATIVHIVILIFILITGLTQANTANYAIFA-----PNGVRGILKASAVLFFAYVGFDGVATLGEEVKNPGRDIP 298 (584)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~r~~p 298 (584)
.++++.+...++++.++++++.++.+.+.++.+.+. ...+.+++.+....+|+|.|+|.+++++||+|||+|++|
T Consensus 156 ~~~~~~~~~~~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~knp~r~ip 235 (466)
T COG0531 156 SAKINSIITILKIIILLIFIILGLFAFGFSNGNLFAPFNPGGGSFGGILAAILLAFFAFTGFEAIATLAEEVKNPKRTIP 235 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCcccccchHHHHHHHHHHHHHHhhcHHHHHHHHHHhcCcccccc
Confidence 999999999999999999998887776654322211 123446888899999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCC---ChHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 007943 299 IGLIGSMVITITVYCVLSATLCLMQPYSQIDVD---APFTLAFQAVGMNWAKYIVALGALKGMTTVLLANVIGQARYFTH 375 (584)
Q Consensus 299 ~ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~~~---~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~ 375 (584)
|+++.+.+.++++|++..++.....+.+++... .|+.+..+..++.+...++.+....+.+++.+++..+.+|.+++
T Consensus 236 ~aii~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~~~~ 315 (466)
T COG0531 236 RAIILSLLIVLILYILGALVIVGVLPAGDLAASAPSAPLALAALFGGGNWGAIIIAILALLSLFGSLLAWILAVSRVLYA 315 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCccHHHHhccCCCccHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998887655433 78888888877789999999999999999999999999999999
Q ss_pred HHhcCCCchhhhcccCccccchHHHHHHHHHHHHHHHh-h----cHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCC
Q 007943 376 IGRTHMAPPFLAAINGKTGTPVNATVVMSLANSVVAFF-T----SLDVLANLLSISTLFIFSLVALALLVRRYYVAGETS 450 (584)
Q Consensus 376 ~ardg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~-~----~~~~l~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~~ 450 (584)
|+|||.+|++++|+|+|+++|+++++++.+++.++.+. . .++.+.++++...++.|.+.+++.+.+|+++++.++
T Consensus 316 ~ardg~lP~~~~~~~~~~~~P~~a~~~~~ii~~~l~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 395 (466)
T COG0531 316 MARDGLLPKFFAKVNPKGRTPVIALILTGIISLILLLLFPLSSIAFNALVSLASVAFLIAYLLVALALLVLRRKKPDLKR 395 (466)
T ss_pred HHhCCCccHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Confidence 99999999999999999999999999999999833332 2 368999999999999999999999999998665544
Q ss_pred ccc
Q 007943 451 ECD 453 (584)
Q Consensus 451 ~~~ 453 (584)
+.+
T Consensus 396 ~~~ 398 (466)
T COG0531 396 PFR 398 (466)
T ss_pred ccc
Confidence 433
No 34
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=100.00 E-value=4.4e-43 Score=370.56 Aligned_cols=362 Identities=30% Similarity=0.519 Sum_probs=311.2
Q ss_pred cCHHHHHHHHHHHhhhhhhHHccHHhHhhccCchHHHHHHHHHHHH-HHHHHHHHhhhhccccCCchhhhHHHHhchHHH
Q 007943 73 LNWWDLIWFGIGAVMGAGIFVLTGEAARNFAGPAVIISYLISGISA-LLSVLCYTEFSVELPVAGGSFAYLRVELGDFVA 151 (584)
Q Consensus 73 l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ii~~l~~-~~~~~~~~el~~~~P~~Gg~y~~~~~~~g~~~g 151 (584)
+|+++.++++++.++|+|++..+ .... +|+..+++|++++++. ++.+++++|+++++|++||.|.|+++.+||.+|
T Consensus 1 l~~~~~~~l~~~~~~g~gi~~~~--~~~~-~G~~~~~~~~i~~~~~~l~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g 77 (426)
T PF13520_consen 1 LGLFSAIALVIGSIIGSGIFFSP--AAAS-AGPSAILAWIIAALLFFLPIALSYAELSSAYPSAGGIYVWVSRAFGPFWG 77 (426)
T ss_dssp B-HHHHHHHHHHCHHTTTTTTHH--HHTC-TGCHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSTTHHHHHHHHH-HHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH--HHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCeeeehhhhcccccch
Confidence 58899999999999999998776 4444 8888899999999888 899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcceeccccccccCcchhHHHHHHHHHHHHHhccchhHHHHHHHH
Q 007943 152 YIAAGNILFEYVVSGASVARSWTSYFATLCNHDPGSFRIHVSSVAEDYSHLDPIAVIVSFFVCVGACLSMKGSSRFNSVA 231 (584)
Q Consensus 152 ~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 231 (584)
+..+|.+++.+....+..+..+.+++...++.+... +......++++++++.+.+|++|.|..+|++.+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~ 147 (426)
T PF13520_consen 78 FIVGWLYWVAYILSLASVASSFASYLLSLFGPDLNP----------SPWPQFLIAIILILLFTLLNLLGIKLSGKIQNIL 147 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTGGGTC----------SHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred hcccceeEEEeeccccccccchhhhhhhcccccccc----------ccchheeeeecccccceEeeechhhhhhhhhhhh
Confidence 999999999999999999999999998776421111 0111336788889999999999999999999999
Q ss_pred HHHHH-HHHHHHHHHhhcccccCCC-------CCCCCCchhHHHHHHHHHHHhhchhhhhhhhcccccCCCCCchhHHHH
Q 007943 232 TIVHI-VILIFILITGLTQANTANY-------AIFAPNGVRGILKASAVLFFAYVGFDGVATLGEEVKNPGRDIPIGLIG 303 (584)
Q Consensus 232 ~~~~~-~~~~~~~i~~~~~~~~~~~-------~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~r~~p~ai~~ 303 (584)
..+++ ..++++++.++...+.+.. ..+.|+++.+++.++...+|+|.|+|++++++||+|| ||+||++..
T Consensus 148 ~~~~i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~--k~ip~ai~~ 225 (426)
T PF13520_consen 148 TVIKIVIPLLVLIILGIVSFSFSGFNSLSFSLSTFFPSGWPGFLAGFSVAFFAFSGFEAIASLAEENKN--KTIPRAIII 225 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCCHHH----SHSCSSCSSSSHHHHHHHHHGGGGTTTTHHHHGGGGSSS--HHHHHHHHH
T ss_pred hhhhhhhhhhhheeEEEeeecccccccccccccccCCccccchhhHHHHHHhhcccccccccccccccc--hhheeeccc
Confidence 99999 5666666666665432221 2455667777889999999999999999999999877 899999999
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCCCC----hHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhc
Q 007943 304 SMVITITVYCVLSATLCLMQPYSQIDVDA----PFTLAFQAVGMNWAKYIVALGALKGMTTVLLANVIGQARYFTHIGRT 379 (584)
Q Consensus 304 ~~~~~~i~y~l~~~~~~~~~~~~~~~~~~----p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~ard 379 (584)
+.+++.++|++..++.....|+++.+.++ +....++..++++...++.+...++.+++.++.+.+.+|++++|+||
T Consensus 226 ~~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a~d 305 (426)
T PF13520_consen 226 SIIIVAIIYILFSIALLGALPDDELANSSNSPSPFAVLASAVGGSWLAIIVSIAAILSLFGSINAFIFGASRLLYAMARD 305 (426)
T ss_dssp HHHHHHHHHHHHHHHHHTTSTHCHHHTTTCHHCHHHHHHHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred chhHHHHHHhhhhheeeecccchhhhcccccccccchhhccccccccccccccccccccccccchhhcchhhcccccccc
Confidence 99999999999999999999988765432 56777788887899999999999999999999999999999999999
Q ss_pred CCCchhhhcccCccccchHHHHHHHHHHHHHHHh------hcHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCC
Q 007943 380 HMAPPFLAAINGKTGTPVNATVVMSLANSVVAFF------TSLDVLANLLSISTLFIFSLVALALLVRRYYVAGETS 450 (584)
Q Consensus 380 g~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~~ 450 (584)
|.+|++|+|+| |+++|++++++..+++.++.+. .+++.+.++.+....+.|.+..++.+++|+|+|+.+|
T Consensus 306 ~~lP~~~~~~~-k~~~P~~a~~~~~~i~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 381 (426)
T PF13520_consen 306 GVLPKWFAKVN-KFGTPYNAIILVAVISSILLLLFLFIPQSSFDILVSLSSVGYLISYILVILAVLFLRRKRPDLKR 381 (426)
T ss_dssp TSSSGGGGTTS-SSSSCHHHHHHHHHHHHHHHHHTTTSSSSHHHHHHHHHHHHTHHHHHHHHHHHHHTHHHSCSSGH
T ss_pred cchhhhhhhcc-ccCCceeeehhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcCC
Confidence 99999999999 9999999999999999665432 2678999999999999999999999999999887654
No 35
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=100.00 E-value=6.6e-46 Score=396.56 Aligned_cols=359 Identities=28% Similarity=0.445 Sum_probs=307.0
Q ss_pred HHHHHHHHhhhhhhHHccHHhHhhccCc-hHHHHHHHHHHHHHHHHHHHHhhhhccccCCchhhhHHHHhchHHHHHHHH
Q 007943 78 LIWFGIGAVMGAGIFVLTGEAARNFAGP-AVIISYLISGISALLSVLCYTEFSVELPVAGGSFAYLRVELGDFVAYIAAG 156 (584)
Q Consensus 78 ~~~~~~~~~ig~gi~~~~~~~~~~~~G~-~~~~~~ii~~l~~~~~~~~~~el~~~~P~~Gg~y~~~~~~~g~~~g~~~g~ 156 (584)
+.++++++++|+|+|...+..+.. +|| +.++++++++++.+..+.+++||++++|++||.|.|++|.+||..|+.+||
T Consensus 2 v~~~~ig~~ig~g~f~~~g~~~~~-~G~~~~~la~li~~i~~~~~~~~~~ems~~~p~~Gg~y~y~~~~lg~~~Gf~~gw 80 (478)
T PF00324_consen 2 VFMISIGGIIGTGLFLGSGFAIAA-AGPGGAPLAYLIAGIIVLLVALSLAEMSRRFPSAGGFYAYASRGLGPALGFAAGW 80 (478)
T ss_pred EEEeeHHHHHHHHHHHHHHHHHHh-cccccchhHhHHHHHHHHhhhhhhhhhhhhhccccchhhhhhhccCCcCCceeeH
Confidence 346788999999999999999888 888 589999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--ccCCCCCcceeccccccccCcchhHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Q 007943 157 NILFEYVVSGASVARSWTSYFATL--CNHDPGSFRIHVSSVAEDYSHLDPIAVIVSFFVCVGACLSMKGSSRFNSVATIV 234 (584)
Q Consensus 157 ~~~l~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 234 (584)
.+|++++...+.+....+.+++.. +......|.. ...+..++.+++..+|++|+|..++++.++..+
T Consensus 81 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~i~~~~~~~l~~~gv~~~~~~~~~~~~i 149 (478)
T PF00324_consen 81 AYWLSYIAAIAAEATAAGSFLQFWGYFPGLPSTWVW-----------GILIAIIFILLITLLNLFGVRVSGKIEFILTII 149 (478)
T ss_pred HHHHHHHHHHHhhhhhhhhhhccccccccccccccc-----------cchhhhhhhhhhhhhhhhhhhccchHHHHHHHH
Confidence 999999999999998888777665 3222212210 114567788888999999999999999999999
Q ss_pred HHHHHHHHHHHh-hc-c--cccCCC---------CCCCCCc--------hhHHHHHHHHHHHhhchhhhhhhhcccccCC
Q 007943 235 HIVILIFILITG-LT-Q--ANTANY---------AIFAPNG--------VRGILKASAVLFFAYVGFDGVATLGEEVKNP 293 (584)
Q Consensus 235 ~~~~~~~~~i~~-~~-~--~~~~~~---------~~~~~~g--------~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p 293 (584)
+++.++.+++.+ +. . .++.+. .+..+++ +.+++.++..++++|.|+|+.+.++||+|||
T Consensus 150 ~~~~li~~ii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P 229 (478)
T PF00324_consen 150 KLIALIAFIIVGVIILFFGGGPSNGRYWGDPGSFANNFPPGFTDPSGGGFSGFFAALVFAFFAFVGFESIAILAEEAKNP 229 (478)
T ss_pred hhhHhhhhhhhcccccccccCCCcccccccccccccccccccccccccchhHHHHhhhhhhcccccccccccccccCCCc
Confidence 999998888777 21 1 111111 1123333 7889999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCC------ChHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHh
Q 007943 294 GRDIPIGLIGSMVITITVYCVLSATLCLMQPYSQIDVD------APFTLAFQAVGMNWAKYIVALGALKGMTTVLLANVI 367 (584)
Q Consensus 294 ~r~~p~ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~~~------~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (584)
||++|||+..++++++++|++..++.....|+++.... +|+..+.+..+++++..++.+..+.+.+++.++.++
T Consensus 230 ~k~IPra~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~i~~~~~l~s~~s~~~~~~~ 309 (478)
T PF00324_consen 230 RKTIPRATLLSVLRIGVFYVLTSYALTLAVPYDNLGLTAASNSASPFVIAAQYSGGPWLAWIVNAGILISAFSSANASLY 309 (478)
T ss_pred hhhhhhHhhhhhhhhhhhhhhhhhhcccccCccchhhccccccccchhhhhhhcccccccceecccchhhhhhhhhhhhc
Confidence 99999999999999999999999999999998886321 489999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhcCCCchhhhcccCccccchHHHHHHHHHHHHHHHhh------cHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007943 368 GQARYFTHIGRTHMAPPFLAAINGKTGTPVNATVVMSLANSVVAFFT------SLDVLANLLSISTLFIFSLVALALLVR 441 (584)
Q Consensus 368 ~~sR~l~~~ardg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~~~~~~~~i~~ 441 (584)
+.||++++|||||.+|+++.+.|+|+|+|++|++++.+++.+..+.. .++.+.++.+...++.|.+.+++.+++
T Consensus 310 ~~sR~l~ama~dg~lP~~~~~~~~k~~~P~~Ai~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~~ 389 (478)
T PF00324_consen 310 AASRLLYAMARDGLLPKKFFARHPKNGVPYVAILVSSIISLLVLLLGSFSPGIVFNWLLNISTISNLIVYILINISYIRF 389 (478)
T ss_pred ccceeehhhhhhhhhhhhhhhhhhcCCceEEEEeeehhchheeeeeccchhhHHHHHHhhhhhhhhhhHHHhhhhhhhhh
Confidence 99999999999999997766777799999999999999987766542 466788899999999999999999988
Q ss_pred hhhcCCC
Q 007943 442 RYYVAGE 448 (584)
Q Consensus 442 r~~~~~~ 448 (584)
|++.+..
T Consensus 390 r~~~~~~ 396 (478)
T PF00324_consen 390 RKKFKYR 396 (478)
T ss_pred hhhhccc
Confidence 8875543
No 36
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=100.00 E-value=7.2e-41 Score=358.32 Aligned_cols=376 Identities=18% Similarity=0.243 Sum_probs=272.2
Q ss_pred cccccCHHHHHHHHHHHhhhhhhHHccHHhHhhccCchHHHHHHHHHHH-HHHHHHHHHhhhhcccc-CCchhhhHHHHh
Q 007943 69 MKKNLNWWDLIWFGIGAVMGAGIFVLTGEAARNFAGPAVIISYLISGIS-ALLSVLCYTEFSVELPV-AGGSFAYLRVEL 146 (584)
Q Consensus 69 l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ii~~l~-~~~~~~~~~el~~~~P~-~Gg~y~~~~~~~ 146 (584)
.+|++|++++.+++++.++|.+.. +..... +|+..++.+++++++ .++.+++++||++++|+ +||.|+|+++.+
T Consensus 5 ~~~~l~~~~l~~~~~~~vig~~~~---~~~~~~-~G~~~i~~~~i~~~~~~l~~al~~aEL~s~~P~~aGG~Y~w~~~~~ 80 (496)
T PRK15238 5 TKKKLSLIGLILMIFTSVFGFANS---PRAFYL-MGYSAIPWYILSAILFFIPFALMMAEYGSAFKDEKGGIYSWMNKSV 80 (496)
T ss_pred ccCeeeHHHHHHHHHHHHHhCCch---HHHHHH-cChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHc
Confidence 478899999999999999986532 333334 788877777777765 67899999999999997 899999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHccCCC-CCcceeccccccccCcchhHHHHHHHHHHHHHhccchhH
Q 007943 147 GDFVAYIAAGNILFEYVVSGASVARSWTS-YFATLCNHDP-GSFRIHVSSVAEDYSHLDPIAVIVSFFVCVGACLSMKGS 224 (584)
Q Consensus 147 g~~~g~~~g~~~~l~~~~~~a~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 224 (584)
||.+||..+|.+|..+............. .....++... ..|.. .... .......++++.+++.+.+|++|+|..
T Consensus 81 G~~~gf~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~a~~~~~~~t~vn~~g~~~~ 157 (496)
T PRK15238 81 GPKFAFIGTFMWFASYIIWMVSTASKIWIPFSTFIFGKDTTQTWHF--LGLN-STQVVGILAVIWMILVTFVASKGINKI 157 (496)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhhhhh--hccc-chHHHHHHHHHHHHHHHHHHccchHHH
Confidence 99999999999888887665443322211 1111222111 11110 0000 000112445555567899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH----Hhhccc-ccC---CCCCCCC---Cch---hHHHHHHHHHHHhhchhhhhhhhcccc
Q 007943 225 SRFNSVATIVHIVILIFILI----TGLTQA-NTA---NYAIFAP---NGV---RGILKASAVLFFAYVGFDGVATLGEEV 290 (584)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~i----~~~~~~-~~~---~~~~~~~---~g~---~~~~~~~~~~~~~~~G~e~~~~~a~E~ 290 (584)
++++++.+..++...+++++ ..+... +.. +..++.+ .++ .+++.++..+.|+|.|+|..++++||+
T Consensus 158 ~~i~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~ 237 (496)
T PRK15238 158 AKVTSIGGIAVMLLNIVLLLVSIIILILNGGHFAQPIGVSSFVTSPNPAYQSPIAVLSFVVFAIFAYGGIEAVGGLVDKT 237 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccHhhcccCCCCccccchHHHHHHHHHHHHHHhHHHHHHHHHhc
Confidence 99999888776654322111 111111 111 1111111 111 357777888999999999999999999
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCC-------CChHHHHHHHhC-----------------chHH
Q 007943 291 KNPGRDIPIGLIGSMVITITVYCVLSATLCLMQPYSQIDV-------DAPFTLAFQAVG-----------------MNWA 346 (584)
Q Consensus 291 k~p~r~~p~ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~~-------~~p~~~~~~~~g-----------------~~~~ 346 (584)
|||+|++|||+..+..+++++|++..+.+....|.++... +.|+. ..+..+ ++++
T Consensus 238 ~~p~~~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~g~~~~~~~~~g~~~ 316 (496)
T PRK15238 238 ENPEKNFPKGIIIAAIVISIGYSLAIFLWGVSTNWQQVLSNKSVNLGNITYV-LMNNLGYTLGHALGLSPAASLTLGVWF 316 (496)
T ss_pred cCCCccccHHHHHHHHHHHHHHHHHHHHHHhcCchhhcCCccccchhccHHH-HHHHHHHHHHHHhccchhhhhhhhHHH
Confidence 9999999999999999999999999888877777666532 12332 122221 2445
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCchhhhcccCccccchHHHHHHHHHHHHHHHhh---------cHH
Q 007943 347 KYIVALGALKGMTTVLLANVIGQARYFTHIGRTHMAPPFLAAINGKTGTPVNATVVMSLANSVVAFFT---------SLD 417 (584)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~ardg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~~---------~~~ 417 (584)
..++++..+.+.+++.++..++.+|.++.++|||.+||+|+|+| |+|+|++|++++.+++.++.+.. .|+
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~g~~P~~f~k~n-k~g~P~~a~~~~~~i~~l~~~~~~~~~~~~~~~f~ 395 (496)
T PRK15238 317 ARITGLSMFLAYTGAFFTLSYSPLKQLIEGTPKALWPKKMTKLN-KNGMPANAMWLQCIIVSVFILLVSFGGDAASAFFN 395 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCccCcccHHHHhhC-cCCCcHHHHHHHHHHHHHHHHHHHhCchhHHHHHH
Confidence 55777888899999999999999999999999999999999999 89999999999998877554331 178
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCccch
Q 007943 418 VLANLLSISTLFIFSLVALALLVRRYYVAGETSECDQ 454 (584)
Q Consensus 418 ~l~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~~~~~~ 454 (584)
.+.++++...++.|++++++++++|| +++.+|+++.
T Consensus 396 ~l~~l~~~~~li~y~~~~~a~i~~r~-~~~~~r~~~~ 431 (496)
T PRK15238 396 ILTLMANVSMTLPYLFLAGAFPFFKK-KKDIDRPFVV 431 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh-ccCCCCCcee
Confidence 89999999999999999999999876 5666666553
No 37
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.97 E-value=1.6e-28 Score=255.14 Aligned_cols=341 Identities=16% Similarity=0.117 Sum_probs=269.9
Q ss_pred HHHHHHhhhhhhHHccHHhHhhccCchHHHHHHHHHHHHHHHHHHHHhhhhccccCCchhhhHHHHhchHHHHHHHHHHH
Q 007943 80 WFGIGAVMGAGIFVLTGEAARNFAGPAVIISYLISGISALLSVLCYTEFSVELPVAGGSFAYLRVELGDFVAYIAAGNIL 159 (584)
Q Consensus 80 ~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ii~~l~~~~~~~~~~el~~~~P~~Gg~y~~~~~~~g~~~g~~~g~~~~ 159 (584)
++.+++++|+|++..|+..... +++..++..+++++++...+++++|+.+++|++||.|+|+++.+||..|++.+|.++
T Consensus 4 ~lv~gt~IGaGIl~lP~~~a~~-g~~~~~~~~i~~~~~~~~~~l~~~el~~~~p~~~~~~~~~~~~~G~~~g~~~~~~~~ 82 (381)
T TIGR00837 4 LIIAGTTIGAGMLALPTSTAGA-WFIWTLLLLILLWFLMLHSGLLLLEVYLTYPGGASFNTIAKDLLGKTGNIIAGLSLL 82 (381)
T ss_pred EEeehhhHhHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCHHHHHHHHHHHH
Confidence 4567889999999999987654 555667778999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHccCCCCCcceeccccccccCcchhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Q 007943 160 FEYVVSGASVARSWTSYFATLCNHDPGSFRIHVSSVAEDYSHLDPIAVIVSFFVCVGACLSMKGSSRFNSVATIVHIVIL 239 (584)
Q Consensus 160 l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 239 (584)
+.+.....++....++++...++..... ..+ .....+++.+++..++.+|.|..+|++.+++..++..+
T Consensus 83 ~~~~~~~~ay~~~~~~~l~~~~~~~~~~------~~~-----~~~~~~~~~~v~~~l~~~G~~~~~~v~~i~~~~~l~~l 151 (381)
T TIGR00837 83 FVLYILTYAYISGGGSILSRLIGEYFGF------PWS-----ARAIVLIFTVLFGSFVWLSTSAVDRITRVLIFGKIIAF 151 (381)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHhcCC------Ccc-----HHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHH
Confidence 9998888888888888888776531100 001 12456667778889999999999999999999999998
Q ss_pred HHHHHHhhcccccCCCCCCC--CCchhHHHHHHHHHHHhhchhh-hhhhhcccccCCCCCchhHHHHHHHHHHHHHHHHH
Q 007943 240 IFILITGLTQANTANYAIFA--PNGVRGILKASAVLFFAYVGFD-GVATLGEEVKNPGRDIPIGLIGSMVITITVYCVLS 316 (584)
Q Consensus 240 ~~~~i~~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~G~e-~~~~~a~E~k~p~r~~p~ai~~~~~~~~i~y~l~~ 316 (584)
+++++.++.+.+.+++.+.. +.++.++..+....+++| |+| ....+.+|+|+++|++||+++.+..++.++|++..
T Consensus 152 ~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~f-g~~~~i~~~~~~~~~~~k~i~raii~g~~i~~~lY~l~~ 230 (381)
T TIGR00837 152 ALVFSGLLPHVKGDLLLDVALDTSYWPYILSALPVCLTSF-GFHGNVPSLYKYYDGNVKKVKKSILIGSAIALVLYILWQ 230 (381)
T ss_pred HHHHHHHHhhccHHHHhcCccccccHHHHHHHHHHHHHHH-HcccccHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888877776666654432 235667788888888888 665 68888999987799999999999999999999999
Q ss_pred HHHHhccCCCCCCC-------CChHHHHHHH-hCchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCchhhhc
Q 007943 317 ATLCLMQPYSQIDV-------DAPFTLAFQA-VGMNWAKYIVALGALKGMTTVLLANVIGQARYFTHIGRTHMAPPFLAA 388 (584)
Q Consensus 317 ~~~~~~~~~~~~~~-------~~p~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~ardg~lP~~~~~ 388 (584)
.+..+..|.++++. .+++.++++. .++++...++.+...+++.++.++...+.++. +++.+++
T Consensus 231 ~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~---------l~~~~~~ 301 (381)
T TIGR00837 231 LATMGNLPRSEFLPIIAKGGNLDGLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDY---------LADLFKF 301 (381)
T ss_pred HHHhCCCCHHHHHHHHHcCCChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHhCC
Confidence 99999999988641 2466667764 67788889999999999999999988777744 3444445
Q ss_pred ccCccccchHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 007943 389 INGKTGTPVNATVVMSLANSVVAFFTSLDVLANLLSISTLFIFSLVALALLVRRY 443 (584)
Q Consensus 389 ~~~~~~~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~r~ 443 (584)
.|++++ |..+.+++.+...++........+..+...+....++...+..+..++
T Consensus 302 ~~~~~~-~~~~~~~~~~~pl~~a~~~p~~~~~~l~~~G~~~~~~~~~~p~l~~~~ 355 (381)
T TIGR00837 302 DDSKKG-RFKTGLLTFLPPLVFALFYPEGFLYAIGYAGLAATIWAVIIPALLAWK 355 (381)
T ss_pred CcccCC-CchhhhhhHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443434 677888888888888777666667777777777777766666655533
No 38
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.94 E-value=2.9e-25 Score=225.81 Aligned_cols=392 Identities=16% Similarity=0.176 Sum_probs=299.5
Q ss_pred ccCHHHHHHHHHH-HhhhhhhHHccHHhHhhccCch-HHHHHHHHHHHHHHHHHHHHhhhhccc-cCCchhhhHHHHhch
Q 007943 72 NLNWWDLIWFGIG-AVMGAGIFVLTGEAARNFAGPA-VIISYLISGISALLSVLCYTEFSVELP-VAGGSFAYLRVELGD 148 (584)
Q Consensus 72 ~l~~~~~~~~~~~-~~ig~gi~~~~~~~~~~~~G~~-~~~~~ii~~l~~~~~~~~~~el~~~~P-~~Gg~y~~~~~~~g~ 148 (584)
++|.++.++.-.. ++...=+|...|.++.+ +|-. .++-++++-.+.+.+.+++..+++.-- +.||.|..++|.+||
T Consensus 66 kLgTf~GvfvPtaLsmfSiLlFLR~gfIvG~-aGll~Tll~lliaY~I~llTvlSicAIsTNGaV~GGGaYymISRsLGp 144 (945)
T KOG1288|consen 66 KLGTFEGVFVPTALSMFSILLFLRFGFIVGQ-AGLLKTLLMLLIAYAILLLTVLSICAISTNGAVRGGGAYYMISRSLGP 144 (945)
T ss_pred cccceeeEechhHHHHHHHHHHHHHhhhhcc-hHHHHHHHHHHHHHHHHHHHHHHHhhhccCCceecCceEEEEEcccCc
Confidence 6777766544333 33444568888888877 7765 666677777777778888887777665 788999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcceeccccccccCcchhHHHHHHHHHHHHHhccchhHHHHH
Q 007943 149 FVAYIAAGNILFEYVVSGASVARSWTSYFATLCNHDPGSFRIHVSSVAEDYSHLDPIAVIVSFFVCVGACLSMKGSSRFN 228 (584)
Q Consensus 149 ~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 228 (584)
..|--.|..++++.+..++.++.++.+-+.+.++.+... ......+|+++++..+.+.++..++..+.+.|...++|..
T Consensus 145 EfGGSIGllFf~anV~~~am~isG~vE~il~nfG~~a~g-~sg~~~lP~g~ww~fly~t~vl~l~~~vc~lGsalfAkas 223 (945)
T KOG1288|consen 145 EFGGSIGLLFFVANVFNCAMNISGFVEPILDNFGKEAQG-ASGSQFLPDGYWWRFLYTTLVLALCLIVCLLGSALFAKAS 223 (945)
T ss_pred ccCCeeeehhhHHHHhcchhhhhhhhHHHHHhcCccccC-CcccccCCCCcchhhHHHHHHHHHHHHHHHhhHHHHHhhh
Confidence 999999999999999999999999999999999864422 1112235778877888888999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccCCC------------------CCCC-----------------CCchhHHHHHHHHH
Q 007943 229 SVATIVHIVILIFILITGLTQANTANY------------------AIFA-----------------PNGVRGILKASAVL 273 (584)
Q Consensus 229 ~~~~~~~~~~~~~~~i~~~~~~~~~~~------------------~~~~-----------------~~g~~~~~~~~~~~ 273 (584)
+++.+.....+..+.+..+..++.++. +++. ..+..+|-..+...
T Consensus 224 ~i~f~~is~s~~si~iS~ifvgp~~~~ip~~~~p~~sn~t~~~~yTG~~~sTl~dNL~~~yt~dyt~~~~~~F~~~FgV~ 303 (945)
T KOG1288|consen 224 NILFVVISVSLFSIPISFIFVGPFKDPIPVPGDPILSNTTLFVHYTGLSWSTLMDNLGSHYTEDYTGGGYEDFASTFGVF 303 (945)
T ss_pred hhhhhHHHHHHhhhhheeEEeccccCCCCCCCCccccCcceeeeecCccHHHHhhhhhhhhcccccCCCceehhhhheee
Confidence 887766655555554444443322211 1110 01112344445555
Q ss_pred HHhhchhhhhhhhcccccCCCCCchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHhCchHHHHHHHHH
Q 007943 274 FFAYVGFDGVATLGEEVKNPGRDIPIGLIGSMVITITVYCVLSATLCLMQPYSQIDVDAPFTLAFQAVGMNWAKYIVALG 353 (584)
Q Consensus 274 ~~~~~G~e~~~~~a~E~k~p~r~~p~ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~ 353 (584)
+-.-+|.-+.++|++|.|+|.|.+||+.+.+++.+.+.|++..+.+.+..|...++.+-.+....+ .-..++.++
T Consensus 304 F~g~tGimAGAnMSgELk~PSkSIP~GTl~ava~Tf~~Yvl~~flm~~t~~r~~Lq~dy~v~~~is-----l~p~fi~iG 378 (945)
T KOG1288|consen 304 FPGTTGIMAGANMSGELKAPSKSIPKGTLSAVAFTFFVYVLVIFLMGCTVPRTLLQNDYDVMMHIS-----LHPPFILIG 378 (945)
T ss_pred eccchhhhcCCCcCccccCccccCCccchHHHHHHHHHHHHHHHHhccCcchHHhhhchhheeecc-----ccchHHHHH
Confidence 667789999999999999999999999999999999999999999999888876655432221111 112345566
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhcCCCc--hhhhcccCccccchHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHH
Q 007943 354 ALKGMTTVLLANVIGQARYFTHIGRTHMAP--PFLAAINGKTGTPVNATVVMSLANSVVAFFTSLDVLANLLSISTLFIF 431 (584)
Q Consensus 354 ~~~~~~~~~~~~~~~~sR~l~~~ardg~lP--~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 431 (584)
+..+.+.+..+.+.++||++.++|||+++| -.|+|...+.+.|+.|+.++..+.-+..+.+++|.+..+.++.++++|
T Consensus 379 i~sttlfss~s~liGasrvL~alakD~lfg~ll~fak~~s~~~nP~~av~vtw~lvqlvll~g~~N~iA~~it~~FLlty 458 (945)
T KOG1288|consen 379 ILSTTLFSSMSGLIGASRVLEALAKDDLFGGLLFFAKGSSYDGNPYVAVGVTWLLVQLVLLWGDINKIASMITMTFLLTY 458 (945)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhhcccchhhheeeeccccCCCceeeeeHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 666777778889999999999999999999 678888888999999999999999988888999999999999999999
Q ss_pred HHHHHHHHhhhhhc-CCCCCccchhHHHHHHHHHHHHHhH
Q 007943 432 SLVALALLVRRYYV-AGETSECDQKKLIVFLALIISSSIA 470 (584)
Q Consensus 432 ~~~~~~~i~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (584)
..++++++.++... |+.++.+|.+.|-.++.-.+.+...
T Consensus 459 ~~vNLacl~LeissAPNFRPtFkyF~w~TclvG~l~s~~m 498 (945)
T KOG1288|consen 459 GAVNLACLLLEISSAPNFRPTFKYFNWHTCLVGVLLSLGM 498 (945)
T ss_pred HHHHHHHHHhhhccCCCCCchhhhhhHHHHHHHHHHHHhh
Confidence 99999999888755 5555567888776665555444433
No 39
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=99.93 E-value=1.2e-24 Score=222.84 Aligned_cols=412 Identities=15% Similarity=0.187 Sum_probs=304.3
Q ss_pred HHHHHHHHHhhhhhhHHccHHhHhhccCch-HHHHHHHHHHHHHHHHHHHHhhhhccc-cCCchhhhHHHHhchHHHHHH
Q 007943 77 DLIWFGIGAVMGAGIFVLTGEAARNFAGPA-VIISYLISGISALLSVLCYTEFSVELP-VAGGSFAYLRVELGDFVAYIA 154 (584)
Q Consensus 77 ~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ii~~l~~~~~~~~~~el~~~~P-~~Gg~y~~~~~~~g~~~g~~~ 154 (584)
.++.=.+-++.|.-.|....+++.. +|.. .++..++.++..++++.+++..++.-- .+||.|..++|.+||..|-.+
T Consensus 119 GVyLPclQnIlGVilFiRLtWvVG~-AGv~q~fllv~iCC~cTmLTaISmSAIATNGVVpaGGsYfmISRsLGPEFGgAV 197 (1075)
T KOG2082|consen 119 GVYLPCLQNILGVILFIRLTWVVGM-AGVGQGFLLVFICCLCTMLTAISMSAIATNGVVPAGGSYFMISRSLGPEFGGAV 197 (1075)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCeeEEEecccCcccccee
Confidence 3445566778899999999888776 7765 555555666666667777777776543 678999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HccCCCCCc-ceeccccccccCcchhHHHHHHHHHHHHHhccchhHHHHHHHHH
Q 007943 155 AGNILFEYVVSGASVARSWTSYFAT-LCNHDPGSF-RIHVSSVAEDYSHLDPIAVIVSFFVCVGACLSMKGSSRFNSVAT 232 (584)
Q Consensus 155 g~~~~l~~~~~~a~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 232 (584)
|.+++++..+..+.+..+..+.+.. +++...-.- .-......+.++...+.+.+++++.+++...|+|..-++..++.
T Consensus 198 GlcFYLgtT~AaaMYIlGaVEi~L~Yi~P~aaIf~~~~a~~~~~am~nnlRvYGT~~Li~m~lIVf~GVK~Vnk~A~vfL 277 (1075)
T KOG2082|consen 198 GLCFYLGTTVAAAMYILGAVEIFLTYIFPAAAIFGAEDAHDEAAAMLNNLRVYGTVFLILMALIVFVGVKFVNKFAPVFL 277 (1075)
T ss_pred eehhhhhhHHHHHHHHHhHHHHHHHHHccHhhhcCccccccchhhhhcceehHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 9999999999999999999998776 333211000 00001112233345678899999999999999999999998888
Q ss_pred HHHHHHHHHHHHHhhccc-c-----------------------------cCC---------------------------C
Q 007943 233 IVHIVILIFILITGLTQA-N-----------------------------TAN---------------------------Y 255 (584)
Q Consensus 233 ~~~~~~~~~~~i~~~~~~-~-----------------------------~~~---------------------------~ 255 (584)
.+.++.++.+.+.++-.. + ..| .
T Consensus 278 ~CVILSIlaiyaG~i~~~~~~~~~~vC~lgnr~L~~~~~d~c~k~~~~~~~~~~~~L~~~fC~~~~~~~~c~~y~~~nnv 357 (1075)
T KOG2082|consen 278 ACVILSILAIYAGGIKSIFDPPGFPVCMLGNRLLSSSIFDNCSKTETVDNDNVTSFLWGLFCNSNNDSATCDEYFSKNNV 357 (1075)
T ss_pred HHHHHHHHHHHHhhhhhccCCCCCeeEEecceeccccccccchhhhccccccHHHHHHHhhCCCCCCCcccccccccccc
Confidence 888777766655544210 0 001 0
Q ss_pred C------C-------------C------CCCc-------------------hhHHHHHHHHHHHhhchhhhhhhhccccc
Q 007943 256 A------I-------------F------APNG-------------------VRGILKASAVLFFAYVGFDGVATLGEEVK 291 (584)
Q Consensus 256 ~------~-------------~------~~~g-------------------~~~~~~~~~~~~~~~~G~e~~~~~a~E~k 291 (584)
+ + + .+.| -..|..-+..-+-+.+|+-+.++.+++.|
T Consensus 358 t~i~GipG~a~g~~~eNlws~Ylekg~~v~~g~~~~~~~~~~~~~~V~~Di~tSFtlLvgIfFPsVTGImaGSNrSGDLk 437 (1075)
T KOG2082|consen 358 TEIQGIPGLASGVFKENLWSAYLEKGEIVEYGVPSADIADSSGHPYVVQDITTSFTLLVGIFFPSVTGIMAGSNRSGDLK 437 (1075)
T ss_pred eeecCCcchhhhhhhhhhhHhhhcccccccCCCCCCCcccccCCCceeecchhhHHHHHHhhccccceeeecCCCCcccc
Confidence 0 0 0 0000 01233333334557889999999999999
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCChHHHHHH------HhCchHHHHHHHHHHHHHHHHHHHHH
Q 007943 292 NPGRDIPIGLIGSMVITITVYCVLSATLCLMQPYSQIDVDAPFTLAFQ------AVGMNWAKYIVALGALKGMTTVLLAN 365 (584)
Q Consensus 292 ~p~r~~p~ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~p~~~~~~------~~g~~~~~~~~~~~~~~~~~~~~~~~ 365 (584)
||+|++|.+.+.+++++..+|+...+.+..+.....+.+. +.+... .+. -+..+++.++.+++.+++.+.+
T Consensus 438 DaQkSIPvGTI~AilTTS~vYlssv~lFGa~i~~~vLRDK--fG~sv~g~lVva~la-WPsPwVi~IGsFlST~GAgLQs 514 (1075)
T KOG2082|consen 438 DAQKSIPVGTIAAILTTSFVYLSSVVLFGACIEGVVLRDK--FGQSVGGNLVVATLA-WPSPWVIVIGSFLSTCGAGLQS 514 (1075)
T ss_pred chhhcCchhhhHHHHHHHHHHHHHHHHHHHhhcchhhhhh--hhhhccCcEEEEEec-CCCceeeehhHHHHHhHHHHhh
Confidence 9999999999999999999999988888776663322110 011110 111 1123677788999999999999
Q ss_pred HhhhHHHHHHHHhcCCCc--hhhhcccCccccchHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHh-hh
Q 007943 366 VIGQARYFTHIGRTHMAP--PFLAAINGKTGTPVNATVVMSLANSVVAFFTSLDVLANLLSISTLFIFSLVALALLV-RR 442 (584)
Q Consensus 366 ~~~~sR~l~~~ardg~lP--~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~-~r 442 (584)
+.+++|++++.|||+.+| +.|+|.+ ++|-|.+|++++.+++-..+++++.+.+..+.++.++++|.++++++.+ --
T Consensus 515 LtgAPRLLQAIAkD~IiPfL~~F~~~~-~ngEPt~aLlLT~~Ice~gILigslD~iApilsmFFLMCY~fVNLaCavqtL 593 (1075)
T KOG2082|consen 515 LTGAPRLLQAIAKDDIIPFLAPFGHGK-ANGEPTWALLLTAIICECGILIGSLDLIAPILSMFFLMCYLFVNLACAVQTL 593 (1075)
T ss_pred hcCcHHHHHHHhhcCccchhhhhcccc-CCCCccHHHHHHHHHHHhhheeechhHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 999999999999999999 9999988 8899999999999999999999999999999999999999999986654 44
Q ss_pred hhcCCCCCccchhHH-HHHHHHHHHHHhHhhhhccccCCCcchhhHHHHHHHHHHHHHhhhh
Q 007943 443 YYVAGETSECDQKKL-IVFLALIISSSIASSAYWATSDNGWIGYIVTVPVWFLATMGLQLTV 503 (584)
Q Consensus 443 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (584)
.|.|+.++++|.++| +.+++..+|.++++...| +...+..++..++|.+--
T Consensus 594 LrtPnWRPRfkyyHW~LSflG~sLC~~iMF~~SW----------yyAlvAm~~a~~IYKYiE 645 (1075)
T KOG2082|consen 594 LRTPNWRPRFKYYHWSLSFLGASLCLAIMFISSW----------YYALVAMLIAGVIYKYIE 645 (1075)
T ss_pred hcCCCCCccchhhhhHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHh
Confidence 577888888999988 788888899999888877 444455555555555543
No 40
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=99.93 E-value=8.4e-23 Score=210.48 Aligned_cols=287 Identities=13% Similarity=0.170 Sum_probs=237.6
Q ss_pred cccCHHHHHHHHHHHhhhhhhHHccHHhHhhccCchHHHHHHHHHHHHHHHHHHHHhhhhccccCCchhhhHHHHhchHH
Q 007943 71 KNLNWWDLIWFGIGAVMGAGIFVLTGEAARNFAGPAVIISYLISGISALLSVLCYTEFSVELPVAGGSFAYLRVELGDFV 150 (584)
Q Consensus 71 r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ii~~l~~~~~~~~~~el~~~~P~~Gg~y~~~~~~~g~~~ 150 (584)
+++|.+|..++.++.++|+|++..|+..+.. +|+.+++++++++++.+..+++++|+.+++|+. +.++|.++.+||..
T Consensus 1 ~~is~~q~~~l~~~~~iG~gil~~P~~~~~~-a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~p~~-~~~~~~~~~~Gk~~ 78 (359)
T TIGR00912 1 DKISSKQLIFLISSTMIGSGLLTLPALVSQS-AGQDGWISIILGGLIIIFLLCLMIKIMSKFPEK-NFSEILSKYLGKIL 78 (359)
T ss_pred CcCcHHHHHHHHHHHHHHHHHHhhhHHHHhc-cCCCeeHHHHHHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHhhHHH
Confidence 3689999999999999999999999988876 888899999999999999999999999999987 69999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcceeccccccccCcchhHHHHHHHHHHHHHhccchhHHHHHHH
Q 007943 151 AYIAAGNILFEYVVSGASVARSWTSYFATLCNHDPGSFRIHVSSVAEDYSHLDPIAVIVSFFVCVGACLSMKGSSRFNSV 230 (584)
Q Consensus 151 g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 230 (584)
|++.+|.+++......+.....++++++.....+.+.+ .+.+.+++++...+..|+|..+|++.+
T Consensus 79 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tp~~---------------~~~l~~l~~~~~~~~~Gi~~i~r~~~i 143 (359)
T TIGR00912 79 GRLLSILFILYFFLIAAYLIRIFADFIKTYLLPRTPII---------------VIIILIIIVSIYIVRKGIEVLLRTAEI 143 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHH---------------HHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 99999999998888888888888998877654333222 566777778888899999999999999
Q ss_pred HHHHHHHH-HHHHHHHhhcccccCCCCCCCCCchhHHHHHHH-HHHHhhchhhhhhhhcccccCCCCCchhHHHHHHHHH
Q 007943 231 ATIVHIVI-LIFILITGLTQANTANYAIFAPNGVRGILKASA-VLFFAYVGFDGVATLGEEVKNPGRDIPIGLIGSMVIT 308 (584)
Q Consensus 231 ~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~G~e~~~~~a~E~k~p~r~~p~ai~~~~~~~ 308 (584)
+..+.+.. ++++........+.+|..|..++|+.+.+.+.. ...++|.|+|......+|+||| |+.||++..+...+
T Consensus 144 ~~~~~i~~~~~il~~~~~~~~~~~~l~P~~~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~-~~~~k~~~~~~~~~ 222 (359)
T TIGR00912 144 LLIIFLILFILVLILLAPKLGNIKNLLPVLENGLSPILKGAYPVVTFAFGEIEIFFLLFPLLSKK-KKIKKSIIKAIIIG 222 (359)
T ss_pred HHHHHHHHHHHHHHHHhcccccHHHccCccccCcHHHHhhhhHHhhhhhHHHHHHHHHHHHhCCh-hhhHHHHHHHHHHH
Confidence 99888777 344444444455677888888889888888877 8899999999999999999996 56899999999999
Q ss_pred HHHHHHHHHHHHhccCCCCCCC-CChHHHHHHHhCch-HHH---HHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 007943 309 ITVYCVLSATLCLMQPYSQIDV-DAPFTLAFQAVGMN-WAK---YIVALGALKGMTTVLLANVIGQARYFTH 375 (584)
Q Consensus 309 ~i~y~l~~~~~~~~~~~~~~~~-~~p~~~~~~~~g~~-~~~---~~~~~~~~~~~~~~~~~~~~~~sR~l~~ 375 (584)
+++|.+...+..+..++++.+. ..|..+..+....+ ... .++....+.+.+.....+++..++.+..
T Consensus 223 ~~ly~~~~~~~i~~lg~~~~~~~~~P~~~~~~~i~~~~f~eR~e~~~~~~w~~~~f~~~~~~~~~~~~~~~~ 294 (359)
T TIGR00912 223 VLLYILTTFVSISVFGGNVTKNLYWPTLELIKLINIGDFIERFELIVMTFWVFIIFVKIAFYLYIAVKGLSK 294 (359)
T ss_pred HHHHHHHHHHHHheecHHHhhhhcccHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999888764 56999888865543 333 3444444556666666677777777654
No 41
>PHA02764 hypothetical protein; Provisional
Probab=99.87 E-value=2.8e-20 Score=174.25 Aligned_cols=280 Identities=16% Similarity=0.160 Sum_probs=187.8
Q ss_pred ccccccccccCHHHHHHHHHHHhhhhhhHHccHHhHhhccCchHHHHHHHHHHHHHHHHHHHHhhhhccccCCchhhhHH
Q 007943 64 RSEHEMKKNLNWWDLIWFGIGAVMGAGIFVLTGEAARNFAGPAVIISYLISGISALLSVLCYTEFSVELPVAGGSFAYLR 143 (584)
Q Consensus 64 ~~~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ii~~l~~~~~~~~~~el~~~~P~~Gg~y~~~~ 143 (584)
|+++++.|+.+.+|.++..++.+.+......+........|...+++|+++++++++.+++++|+++++|++||.|.|.+
T Consensus 5 ReSSGLVREvs~lDAF~~Nl~~m~~Gi~Is~~~l~a~l~pG~nlLLAWLLGGLlALPgAL~YAELGSAmPrAGGdYVYIS 84 (399)
T PHA02764 5 RKSSGIIKSFNILDIFSINLLYMGILSGISYPLFVSSLLKNVNLLFAILIGAVFEIPLLLMYYKLTTKFPLNGGDYAYIR 84 (399)
T ss_pred hhcCCceeeccHHHHHHHHHHhhccchhHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCceEEEhH
Confidence 37889999999999999999888432211222222222245568899999999999999999999999999999999999
Q ss_pred HHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcceeccccccccCcchhHHHHHHHHHHHHHhccchh
Q 007943 144 VELGDFVAYIAAGNILFEYVVSGASVARSWTSYFATLCNHDPGSFRIHVSSVAEDYSHLDPIAVIVSFFVCVGACLSMKG 223 (584)
Q Consensus 144 ~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 223 (584)
|++||.+|++.||..|+.+....++.+-.... + +..+ +... . .....-......+...|.|.
T Consensus 85 RAFGP~~GFLvG~a~WLtl~~G~Pal~~l~~~--~--~~i~-~~~~------------~-f~~~~s~~~i~~~i~~~~~~ 146 (399)
T PHA02764 85 TAFSSKFYTIFGISLWLTYVLSQPILGDLVLL--N--FNIQ-NQFE------------Q-FLIVESLFPIVLLIIANKKI 146 (399)
T ss_pred HhhCccHHHHHHHHHHHHHHhhcchhhheeee--e--eeeH-HHHH------------H-HHHHHHHHHHHHHHHcccHH
Confidence 99999999999999999998887765532110 0 0000 0000 0 11111122233344467888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCCCCch-hHHHHHHHHHHHhhchhhhhhhhcccccCCCCCchhHHH
Q 007943 224 SSRFNSVATIVHIVILIFILITGLTQANTANYAIFAPNGV-RGILKASAVLFFAYVGFDGVATLGEEVKNPGRDIPIGLI 302 (584)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~r~~p~ai~ 302 (584)
.+|...++.....+ +..+...+.-|+.. ++.+. .....+...-.-.|.-.|+..+.++|.||-+|....+..
T Consensus 147 ~~~~v~il~~a~~i------~aif~~~~s~n~~~-~~f~~snt~~~a~~~~l~~~~fi~a~~y~~~ei~n~~k~~~~gyf 219 (399)
T PHA02764 147 YAKIVDILAIAQII------IAIFIAFKSFNFQY-QNFTISNTLLSALLFDLSAFIFINAISYIAGEIKNIKKSSMIGYF 219 (399)
T ss_pred HHHHHHHHHHHHHH------HHHHhhccceeEEE-cceeehHHHHHHHHHHHHHHHHhccHHHHHHHhhcchhhhhhhhH
Confidence 88887775544433 11121122222210 11112 235666777777888899999999999999999888888
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCC
Q 007943 303 GSMVITITVYCVLSATLCLMQPYSQIDVDAPFTLAFQAVGMNWAKYIVALGALKGMTTVLLANVIGQARYFTHIGRTHMA 382 (584)
Q Consensus 303 ~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~ardg~l 382 (584)
.+...+.++-+..++. + . .++.+.+....++-+....-..||+.++|+-|+.+
T Consensus 220 ~s~~~~~~~~ii~sy~-------------n-~-------------~il~~~~~~w~~~y~~~~~~~~srli~~~~fd~~l 272 (399)
T PHA02764 220 VSYGIVAILSIIDSYS-------------N-L-------------NILFALMPIWFFSYMPIANKIQSRLIQTMSFDKVL 272 (399)
T ss_pred HHHHHHHHHHHHHhhh-------------h-H-------------HHHHHHHHHHHHhheeeecchHHHHHHHHHhhhhc
Confidence 8777766655543311 0 0 12222344555666666667789999999999999
Q ss_pred chhhhcccCccccch
Q 007943 383 PPFLAAINGKTGTPV 397 (584)
Q Consensus 383 P~~~~~~~~~~~~P~ 397 (584)
|++|+|+|| ++|+
T Consensus 273 pe~f~k~~~--nv~~ 285 (399)
T PHA02764 273 PEKFSKINP--NVLL 285 (399)
T ss_pred hHHHhccCC--Ccee
Confidence 999999983 7887
No 42
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=99.85 E-value=7.1e-18 Score=170.74 Aligned_cols=338 Identities=14% Similarity=0.119 Sum_probs=255.3
Q ss_pred HHHHhhhhhhHHccHHhHhhccCch---HHHHHHHHHHHHHHHHHHHHhhhhccccCCchhhhHHHHhchHHHHHHHHHH
Q 007943 82 GIGAVMGAGIFVLTGEAARNFAGPA---VIISYLISGISALLSVLCYTEFSVELPVAGGSFAYLRVELGDFVAYIAAGNI 158 (584)
Q Consensus 82 ~~~~~ig~gi~~~~~~~~~~~~G~~---~~~~~ii~~l~~~~~~~~~~el~~~~P~~Gg~y~~~~~~~g~~~g~~~g~~~ 158 (584)
.++.-+|+|.+..|+..-.+ +|.. +.++|+++++..-+.+++ +.|++||.|++..+.+||..|++.+|..
T Consensus 4 lFamffGAGNlIfPp~lG~~-aG~~~~~a~lgf~ltgV~lpllgl~------av~~~gG~~~~l~~~~g~~f~~lf~~~~ 76 (378)
T TIGR00796 4 LFALFFGAGNIIFPPMLGLA-AGEHVWTAALGFLLTGVGLPLLGLI------ALALVGGGYDSLSARIGKVFGILFTVIL 76 (378)
T ss_pred HHHHHHhhhHHhhhHHHHHH-hCccHHHHHHHHHHHHHHHHHHHHh------eeeecCCCHHHHHHHhChHHHHHHHHHH
Confidence 45566899999999888777 5543 678999999998888877 8899999999999999999999999977
Q ss_pred HHHHHHH-----HHHHHHHHHHHHHHHccCCCCCcceeccccccccCcchhHHHHHHHHHHHHHhccchhHHHHHHHHHH
Q 007943 159 LFEYVVS-----GASVARSWTSYFATLCNHDPGSFRIHVSSVAEDYSHLDPIAVIVSFFVCVGACLSMKGSSRFNSVATI 233 (584)
Q Consensus 159 ~l~~~~~-----~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 233 (584)
++..--. .++.++..+ +...++...... ...+..+++..+...+++++.|...+++.+++.
T Consensus 77 ~l~iGP~~aiPRtaa~s~e~~--i~p~~~~~~~~~------------~l~i~siiff~i~~~l~~~~~k~~~~iGk~LTP 142 (378)
T TIGR00796 77 YLTIGPLFAIPRTATVSFEMG--IAPLLHSPTSLL------------ALFIFSLIFFAVVLLLSLNPSKLIDRVGKFLTP 142 (378)
T ss_pred HHHHHhchhhhHHHHHHHHHH--HHhccCcccchH------------HHHHHHHHHHHHHHHHHcCcccHHHHhHHHHHH
Confidence 7554322 222232222 333333211000 012455666666777999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccccCCCCCCCCCch-hHHHHHHHHHHHhhc-------hhhhhhhhcc-cccCCCCCchhHHHHH
Q 007943 234 VHIVILIFILITGLTQANTANYAIFAPNGV-RGILKASAVLFFAYV-------GFDGVATLGE-EVKNPGRDIPIGLIGS 304 (584)
Q Consensus 234 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~-------G~e~~~~~a~-E~k~p~r~~p~ai~~~ 304 (584)
.+++.++.+++.++.+...+...+..+..- ..+..++.-..++|. |+-.+..+.+ |.|||+|+.|+.+..+
T Consensus 143 ~lLi~l~~lii~g~~~p~g~~~~~~~~~~~~~~f~~g~l~GY~TmD~laal~fg~iiv~~i~~~g~~~~~~~~~~~i~~G 222 (378)
T TIGR00796 143 ALLVTLLALIIKALLWPAGPILAASGAYASQQAFSKGFLEGYLTMDALAALVFGIIVVNAIRSRGVTKPKKITKYTIKAG 222 (378)
T ss_pred HHHHHHHHHHHHHHHcCCCCcCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 999999999999887633222111111111 457788888888888 9988888888 9999999999999999
Q ss_pred H-HHHHHHHHHHHHHHHhccCCCCCC----CCChHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhc
Q 007943 305 M-VITITVYCVLSATLCLMQPYSQID----VDAPFTLAFQAVGMNWAKYIVALGALKGMTTVLLANVIGQARYFTHIGRT 379 (584)
Q Consensus 305 ~-~~~~i~y~l~~~~~~~~~~~~~~~----~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~ard 379 (584)
+ ..+...|+...++..+..+.++.. .++.+.++.+..-++....++.+...++++++.++...+.++.
T Consensus 223 ~ia~i~l~~vY~~L~~lGa~~~~~~~~~~~~~~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~~------- 295 (378)
T TIGR00796 223 LIAAVLLAFIYLSLFYLGATSAAAAGDAVNGAQILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSEY------- 295 (378)
T ss_pred HHHHHHHHHHHHHHHHHhcCcHhhhcccCCcHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 8 677778888888888877765443 3446677777777799999999999999999999988885554
Q ss_pred CCCchhhhcccCccccchHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHh--hhhhcCCCCCccchh
Q 007943 380 HMAPPFLAAINGKTGTPVNATVVMSLANSVVAFFTSLDVLANLLSISTLFIFSLVALALLV--RRYYVAGETSECDQK 455 (584)
Q Consensus 380 g~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~--~r~~~~~~~~~~~~~ 455 (584)
|+|.++| +|+.+.++...+...+.....++.+.+++.-...+.|-......+. +|++.|+.+|++|..
T Consensus 296 ------f~~~~~k--~~y~~~v~~~~l~s~~ia~~Gl~~Ii~~~~PvL~~~YP~~i~lill~ll~~~~~~~~~~y~~~ 365 (378)
T TIGR00796 296 ------FHKLVPK--LSYKTWVIVFTLFSFIVANLGLTQIISISIPVLMIIYPLAIVLILLSFLRKLWDSKRAVYQIT 365 (378)
T ss_pred ------HHHhcCC--CCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeeehH
Confidence 5576654 9999999888888877777899999999988888888777766665 777777777777753
No 43
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism]
Probab=99.84 E-value=1e-19 Score=184.57 Aligned_cols=391 Identities=16% Similarity=0.263 Sum_probs=306.0
Q ss_pred ccccCHHHHHHHHH-HHhhhhhhHHccHHhHhhccCch-HHHHHHHHHHHHHHHHHHHHhhhhccc-cCCchhhhHHHHh
Q 007943 70 KKNLNWWDLIWFGI-GAVMGAGIFVLTGEAARNFAGPA-VIISYLISGISALLSVLCYTEFSVELP-VAGGSFAYLRVEL 146 (584)
Q Consensus 70 ~r~l~~~~~~~~~~-~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ii~~l~~~~~~~~~~el~~~~P-~~Gg~y~~~~~~~ 146 (584)
+-++|+|+.++... -++.|.-+|...+++.++ +|.. .++...+...+++.++++..-..++-- ++||.|..++|.+
T Consensus 27 ~v~fg~~~gv~~~cmlni~gv~lflrl~wivgq-agi~~~~~ii~~~~~vt~it~lSa~~I~t~~~vk~Gg~yflis~sl 105 (643)
T KOG2083|consen 27 PVLFGWWDGVFVRCMLNIFGVILFLRLGWIVGQ-AGIGNSVLIIGLTTVVTLITVLSAIAIVTRGQVKSGGVYFLISRSL 105 (643)
T ss_pred ceEEeeeehhhhhhhHHHHHHHHhhhhhheeec-chhhhhHHHHHHHHHHHHHHHHhHheeeecceeccCcEEEEEEecc
Confidence 34599999877654 455689999999999988 8887 777788888889999999888888776 8999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcceeccccccccCcchhHHHHHHHHHHHHHhccchhHHH
Q 007943 147 GDFVAYIAAGNILFEYVVSGASVARSWTSYFATLCNHDPGSFRIHVSSVAEDYSHLDPIAVIVSFFVCVGACLSMKGSSR 226 (584)
Q Consensus 147 g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 226 (584)
|+..|-..|..|.++..+..+.+..++++.+..++....... .+-++.+.+.+...+|..|+++..|
T Consensus 106 g~efggsigiIy~f~~aVa~am~~vgfaEsv~~l~~~~s~~~-------------i~gi~~vt~~ill~i~~ag~~w~~k 172 (643)
T KOG2083|consen 106 GPEFGGSIGIIYAFANAVATAMYVVGFAESVAHLFETESKEM-------------IDGIGSVTVLILLAINVAGVEWEAK 172 (643)
T ss_pred cccccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhccHHH-------------hcchhHHHHHHHHHhhhccchhHHH
Confidence 999999999999999999999999999999999987653211 2347778888889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccc-cC-C--------C-CCCCC---CchhHHHHHHHHHHHhhchhhhhhhhcccccC
Q 007943 227 FNSVATIVHIVILIFILITGLTQAN-TA-N--------Y-AIFAP---NGVRGILKASAVLFFAYVGFDGVATLGEEVKN 292 (584)
Q Consensus 227 ~~~~~~~~~~~~~~~~~i~~~~~~~-~~-~--------~-~~~~~---~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~ 292 (584)
.|.++..+.++.+.-.++..+...+ .+ . + .++.| .+ ..++..+..-+-+.+|.-+-++++++.|+
T Consensus 173 ~q~~ll~il~iai~~f~~gs~~~~~~~~~g~~~~~a~~~~~n~~~~~~~~-~tfF~vf~vfFpaatgilaG~nisGdL~~ 251 (643)
T KOG2083|consen 173 LQIVLLLILLIAIADFLVGSFFSPNEFSSGFFGYRADIFVENLNPDIDPG-YTFFSVFAVFFPAATGILAGANISGDLKD 251 (643)
T ss_pred HHHHHHHHHHHHHHHhhhhhccChhhhcccccccchhhcccCCCCCcCCC-CceEeeeeeecchhhhhhccccccCCCCC
Confidence 9999998888888777776655322 11 0 0 01111 11 24555555667788999999999999999
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCC-----CCC----hHHHHHHHhC-chHHHHHHHHHHHHHHHHHH
Q 007943 293 PGRDIPIGLIGSMVITITVYCVLSATLCLMQPYSQID-----VDA----PFTLAFQAVG-MNWAKYIVALGALKGMTTVL 362 (584)
Q Consensus 293 p~r~~p~ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~-----~~~----p~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~ 362 (584)
|++++|++-..++.....+|.....-.....-.+... .++ .+.+-++... ..........+...+..++.
T Consensus 252 Pq~~IP~GaL~Ai~vst~~yl~~i~~~Ga~~~r~~~~~~~~~~~~~c~~gl~~~~qv~smvS~~~Pl~~AGi~~a~LSsa 331 (643)
T KOG2083|consen 252 PQKAIPLGALLAIGVSTLLYLIFIADLGATPVRDALENWNDTSTKSCPIGLTNYLQVMSMVSTFGPLITAGILAAELSSA 331 (643)
T ss_pred chhhcccchhhhhhhhhhhhhhhhhhcccHHHHHHhccchhhccCCCccchHHHHHHHHhHhhcccchhhHHHHHHHHHH
Confidence 9999999999999999999987776655443333221 111 2222222111 11222345556667777888
Q ss_pred HHHHhhhHHHHHHHHhcCCCc--hhhhcccCccccchHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007943 363 LANVIGQARYFTHIGRTHMAP--PFLAAINGKTGTPVNATVVMSLANSVVAFFTSLDVLANLLSISTLFIFSLVALALLV 440 (584)
Q Consensus 363 ~~~~~~~sR~l~~~ardg~lP--~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~ 440 (584)
.+.+.++.++++++.+|+..| .+++|-.++++.|.++..++...+.....++..+.+..+.+...+.+|..++.+++.
T Consensus 332 lsslVsap~V~QaL~kd~~yp~i~~f~KgyGkn~~Plrg~~l~~~~av~fi~igeln~iapiis~FfL~syAlinf~~f~ 411 (643)
T KOG2083|consen 332 LSSLVSAPKVLQALCKDSLYPSILFFAKGYGKNKEPLRGYLLTFLTAVSFIAIGELNIIAPIISNFFLLSYALINFSCFH 411 (643)
T ss_pred HHHHHhhhHHHHHHHhcCCCccHHHHHccCCccccchHHHHHHHHhHheeEEecccceeccchhhhhhhhhhccchhhhh
Confidence 999999999999999999999 678899999999999999999999988889999999999999999999999999998
Q ss_pred hhhhcCCCCCccch--hHHHHHHHHHHHHHhHhhhhc
Q 007943 441 RRYYVAGETSECDQ--KKLIVFLALIISSSIASSAYW 475 (584)
Q Consensus 441 ~r~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 475 (584)
-+...++..|+.-. .+|...++.+.+..+.+..-|
T Consensus 412 aSl~~s~~wRp~f~~yn~wVSllGalKOG~ImFli~w 448 (643)
T KOG2083|consen 412 ASLAISEGWRPSFKFYNAWVSLLGALLCLAIMFLISW 448 (643)
T ss_pred hhhccccccCchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 88877776665433 358888888888877766555
No 44
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.83 E-value=6e-17 Score=166.82 Aligned_cols=331 Identities=18% Similarity=0.187 Sum_probs=257.6
Q ss_pred cccCHHHHHHHHHHHhhhhhhHHccHHhHhhccCch-HHHHHHHHHHHHHHHHHHHHhhhhccccCCchhhhHHHHhchH
Q 007943 71 KNLNWWDLIWFGIGAVMGAGIFVLTGEAARNFAGPA-VIISYLISGISALLSVLCYTEFSVELPVAGGSFAYLRVELGDF 149 (584)
Q Consensus 71 r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ii~~l~~~~~~~~~~el~~~~P~~Gg~y~~~~~~~g~~ 149 (584)
|+-+.+...++.+|+.+|+|++..|-.... +|.. ..+..+++..++...++.++|...+.|+..+.-+.+++.+||.
T Consensus 1 ~~~~~~~~~~li~GTaIGAGmLaLP~~~~~--~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~~~~~~~~a~~~lG~~ 78 (394)
T PF03222_consen 1 KNNSILGGVLLIAGTAIGAGMLALPIATAG--AGFLPSLILLLIAWPLMYYSGLLLAEVSLNTPEGSSLTSMAEKYLGKK 78 (394)
T ss_pred CCchHHHHHHHHHHccHhHHHHHHHHHHHh--CchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhChH
Confidence 345678889999999999999999987643 5654 7778889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCC-CcceeccccccccCcchhHHHHHHHHHHHHHhccchhHHHHH
Q 007943 150 VAYIAAGNILFEYVVSGASVARSWTSYFATLCNHDPG-SFRIHVSSVAEDYSHLDPIAVIVSFFVCVGACLSMKGSSRFN 228 (584)
Q Consensus 150 ~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 228 (584)
++++.+..|++.......++..+.++.+.+.++.... ++. ......++.++...+.+.|.|...|++
T Consensus 79 g~~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~~~~~------------~~~~~~~f~~i~~~iv~~g~~~v~~~n 146 (394)
T PF03222_consen 79 GGIVIGISYLFLLYALLVAYISGGGSILSSLLGNQLGTDLS------------PWLSSLLFTIIFGGIVYFGTKAVDRIN 146 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCCCCc------------HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 9999999999888888889999999999888865321 110 114555666677777889999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccCCCCCC--CCCchhHHHHHHHHHHHhhchhhhhhhhcccccCCCCCchhHHHHHHH
Q 007943 229 SVATIVHIVILIFILITGLTQANTANYAIF--APNGVRGILKASAVLFFAYVGFDGVATLGEEVKNPGRDIPIGLIGSMV 306 (584)
Q Consensus 229 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~r~~p~ai~~~~~ 306 (584)
..+...+++.++.+.+.++.+.+.++.... .+..+...+.+++..+++|.-......+.+..++-+|+++|++..+..
T Consensus 147 ~~lv~~~i~~~~~l~~~~~p~~~~~~L~~~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d~~k~~~ai~~Gs~ 226 (394)
T PF03222_consen 147 RVLVFGMIISFIILVVYLIPHWNPSNLLDAPPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGDPKKIRKAIIIGSL 226 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcCHHHhhccccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCccHHHHHHHHHHHHH
Confidence 999999999999999999988888776542 234577788999999999999999999999999778889999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCCCC----CC---ChHHHHHH-HhCchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHh
Q 007943 307 ITITVYCVLSATLCLMQPYSQID----VD---APFTLAFQ-AVGMNWAKYIVALGALKGMTTVLLANVIGQARYFTHIGR 378 (584)
Q Consensus 307 ~~~i~y~l~~~~~~~~~~~~~~~----~~---~p~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~ar 378 (584)
+..++|++...+..+..|.++.. .+ +++....+ ..++++...+..+...++..++..+...+....+...=
T Consensus 227 i~lv~yl~w~~~~lg~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~- 305 (394)
T PF03222_consen 227 IPLVMYLLWVFSILGSLPREQFAEAIAQGGNVSALVSALANVSGSPWISILGSIFAFFAIATSFLGVYLGLFDFLADLF- 305 (394)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHhcCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 99999999999998888887642 22 24444444 46678888889999999999999998888777764322
Q ss_pred cCCCchhhhcccCccccchHHHHHHHHHHHHHHHhh--cHHHHHHHHHH
Q 007943 379 THMAPPFLAAINGKTGTPVNATVVMSLANSVVAFFT--SLDVLANLLSI 425 (584)
Q Consensus 379 dg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~~--~~~~l~~~~~~ 425 (584)
.+.|.+.+. .....++.+...++.... .|....+.++.
T Consensus 306 --------k~~~~~~~r-~~~~~ltf~ppl~~a~~~p~~F~~al~~aG~ 345 (394)
T PF03222_consen 306 --------KLKNNSSGR-LKTWLLTFLPPLIFALLFPNGFLIALGYAGI 345 (394)
T ss_pred --------cCCccccch-HHHHHHHHHhHHHHHHHCcHHHHHHHHhhcH
Confidence 221111122 233444555555555553 34445555553
No 45
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=99.80 E-value=8.3e-17 Score=165.39 Aligned_cols=286 Identities=13% Similarity=0.112 Sum_probs=220.3
Q ss_pred HHHHHHHHhhhhhhHHccHHhHhhccCchHHHHHHHHHHHHHHHHHHHHh----h--hhccccCCchhhhHHHHhchHHH
Q 007943 78 LIWFGIGAVMGAGIFVLTGEAARNFAGPAVIISYLISGISALLSVLCYTE----F--SVELPVAGGSFAYLRVELGDFVA 151 (584)
Q Consensus 78 ~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ii~~l~~~~~~~~~~e----l--~~~~P~~Gg~y~~~~~~~g~~~g 151 (584)
.....+++++|+|++..|... |...+++++++++++++.++.++. . .+..| ..+.++++++.+||.+|
T Consensus 8 w~~~l~gt~IGaGiL~LP~~a-----g~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~p-~~~i~~~~~~~fGk~~G 81 (397)
T TIGR00814 8 WMLGLYGTAIGAGVLFLPIQA-----GLGGLWVLVLMAIIAYPLTYFGHRALARFLLSSKNP-CEDITEVVEEHFGKNWG 81 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-CCCHHHHHHHHcCHHHH
Confidence 345677888999999999863 334577777777777776666555 3 44444 66899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcceeccccccccCcchhHHHHHHHHHHHHHhccchhHHHHHHHH
Q 007943 152 YIAAGNILFEYVVSGASVARSWTSYFATLCNHDPGSFRIHVSSVAEDYSHLDPIAVIVSFFVCVGACLSMKGSSRFNSVA 231 (584)
Q Consensus 152 ~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 231 (584)
.+.++.|++........++....+.+.+.+..... .+.+. ..+..++++++...++..|.|...|++.++
T Consensus 82 ~ii~~lY~~~~~~i~~aY~~~~~~~~~~fl~~~~~------~~~p~----~~i~~lilv~il~~iv~~G~~~i~r~~~il 151 (397)
T TIGR00814 82 ILITLLYFFAIYPILLIYSVAITNDSASFLVNQLG------TAPPL----RGLLSLALILILVAIMSFGEKLLFKIMGPL 151 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------CCCcH----HHHHHHHHHHHHHHHHHhcHHHHHHHHHHH
Confidence 99999999999999888887777776665532110 00000 124566667777888999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcccccCCCC--CCCCCchhHHHHHHHHHHHhhchhhhhhhhc----ccccCC---CCCchhHHH
Q 007943 232 TIVHIVILIFILITGLTQANTANYA--IFAPNGVRGILKASAVLFFAYVGFDGVATLG----EEVKNP---GRDIPIGLI 302 (584)
Q Consensus 232 ~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~a----~E~k~p---~r~~p~ai~ 302 (584)
...+++.++.+.+....+.+.+++. +.....+...+.++...+|+|.|+|...+++ +|.+|| +|+..|++.
T Consensus 152 ~~~~ii~l~~l~~~lip~~~~~~L~~~p~~~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~ 231 (397)
T TIGR00814 152 VFPLVLILVLLSLYLIPHWNGANLTTFPSFNGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMK 231 (397)
T ss_pred HHHHHHHHHHHHHHHHHHcCHHHHhcCCcccchHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 9999999988888888888877764 2223346789999999999999999999998 666655 567789999
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCC----CC-hHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 007943 303 GSMVITITVYCVLSATLCLMQPYSQIDV----DA-PFTLAFQAVGMNWAKYIVALGALKGMTTVLLANVIGQARYFTHIG 377 (584)
Q Consensus 303 ~~~~~~~i~y~l~~~~~~~~~~~~~~~~----~~-p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a 377 (584)
.+..+..++|+...+.+....++++... +. .+....+...++....+..+...++..++..+...+....+..+-
T Consensus 232 ~~~~i~~~~y~~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l~ 311 (397)
T TIGR00814 232 GASLILVATVMFFVFSCVLSLSPAEAVAAKEQNISILSYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGAREGLNGIV 311 (397)
T ss_pred HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 9999999999999999999988887532 22 233334467778888888888888888888888888888888777
Q ss_pred hc
Q 007943 378 RT 379 (584)
Q Consensus 378 rd 379 (584)
++
T Consensus 312 ~~ 313 (397)
T TIGR00814 312 LN 313 (397)
T ss_pred HH
Confidence 43
No 46
>PRK09664 tryptophan permease TnaB; Provisional
Probab=99.78 E-value=1.2e-15 Score=155.24 Aligned_cols=344 Identities=11% Similarity=0.082 Sum_probs=249.2
Q ss_pred CHHHHHHHHHHHhhhhhhHHccHHhHhhccCch-HHHHHHHHHHHHHHHHHHHHhhhhccccCCchhhhHHHHhchHHHH
Q 007943 74 NWWDLIWFGIGAVMGAGIFVLTGEAARNFAGPA-VIISYLISGISALLSVLCYTEFSVELPVAGGSFAYLRVELGDFVAY 152 (584)
Q Consensus 74 ~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ii~~l~~~~~~~~~~el~~~~P~~Gg~y~~~~~~~g~~~g~ 152 (584)
+.....++..|+.||+|++..|-.... .|-. ..+..++.++++...++.+.|...++|..-+....+++.+||.+..
T Consensus 10 ~~~gg~~iIaGT~IGAGMLaLP~~~a~--~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~~g~~l~tma~~~LG~~g~~ 87 (415)
T PRK09664 10 SAFWGVMVIAGTVIGGGMFALPVDLAG--AWFFWGAFILIIAWFSMLHSGLLLLEANLNYPVGSSFNTITKDLIGNTWNI 87 (415)
T ss_pred chhhhhHHhhhccHhHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHcChHHHH
Confidence 666688999999999999999876643 4543 7777888999999999999999999998889999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcceeccccccccCcchhHHHHHHHHHHHHHhccchhHHHHHHHHH
Q 007943 153 IAAGNILFEYVVSGASVARSWTSYFATLCNHDPGSFRIHVSSVAEDYSHLDPIAVIVSFFVCVGACLSMKGSSRFNSVAT 232 (584)
Q Consensus 153 ~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 232 (584)
+.+..+.+-.-....++..+.++.++..++... .+. .+ .....+++.++...+.+.|.|...|.+.++.
T Consensus 88 i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~-~~~-----i~-----~~~~~llF~~~~~~~v~~gt~~vd~~nr~l~ 156 (415)
T PRK09664 88 ISGITVAFVLYILTYAYISANGAIISETISMNL-GYH-----AN-----PRIVGICTAIFVASVLWISSLAASRITSLFL 156 (415)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhc-cCC-----Cc-----HHHHHHHHHHHHHHHHHhchhHHHHHHHHHH
Confidence 887777666667777788888888888775310 010 01 1145678888888999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccccCCCCCCCCCc-----hhHHHHHHHHHHHhhchhhhhhhhcccccCCCCCchhHHHHHHHH
Q 007943 233 IVHIVILIFILITGLTQANTANYAIFAPNG-----VRGILKASAVLFFAYVGFDGVATLGEEVKNPGRDIPIGLIGSMVI 307 (584)
Q Consensus 233 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g-----~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~r~~p~ai~~~~~~ 307 (584)
..+++.++..+.....+.+.++........ +...+.+++..+++|.-...+..+....++-.|+++|+++.+..+
T Consensus 157 ~~~ii~f~~~~~~l~~~i~~~~L~~~~~~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~~d~~~~~kaIl~Gs~I 236 (415)
T PRK09664 157 GLKIISFVIVFGSFFFQVDYSILRDATSTTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYGKRKDKLIKSVVFGSLL 236 (415)
T ss_pred HHHHHHHHHHHHHHhhcccHHHHhcCccccccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhCccHHHHHHHHHHHHHH
Confidence 999999888888877777766654221111 234677888889999888888888888776667899999999999
Q ss_pred HHHHHHHHHHHHHhccCCCCCC----CCChHH----HHHHHhCchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhc
Q 007943 308 TITVYCVLSATLCLMQPYSQID----VDAPFT----LAFQAVGMNWAKYIVALGALKGMTTVLLANVIGQARYFTHIGRT 379 (584)
Q Consensus 308 ~~i~y~l~~~~~~~~~~~~~~~----~~~p~~----~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~ard 379 (584)
..++|++...+..+..|+++.. ...... ...+...+++...+..+...++..+|..+...+....+..+-+
T Consensus 237 pLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l~~s~~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l~D~~~- 315 (415)
T PRK09664 237 ALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSLVKSFLGTKQHGIIEFCLLVFSNLAVASSFFGVTLGLFDYLADLFK- 315 (415)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHcCCCchHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-
Confidence 9999999999999988877642 212222 2233456678888888888888888888776666666554332
Q ss_pred CCCchhhhcccCccccchHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007943 380 HMAPPFLAAINGKTGTPVNATVVMSLANSVVAFFTSLDVLANLLSISTLFIFSLVALALLV 440 (584)
Q Consensus 380 g~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~ 440 (584)
+.+ +.+-......++.+...++.++..-..+..+.-.+.........+..+.
T Consensus 316 --------~~~-~~~~r~~~~~ltflPPl~~al~~P~gFl~AL~yAG~~~~il~~ilP~lM 367 (415)
T PRK09664 316 --------IDN-SHGGRFKTVLLTFLPPALLYLIFPNGFIYGIGGAGLCATIWAVIIPAVL 367 (415)
T ss_pred --------CCC-ccccceeeehhhHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 211 1111222345677778777777655555554444444444444444333
No 47
>PRK10483 tryptophan permease; Provisional
Probab=99.78 E-value=1.6e-15 Score=154.54 Aligned_cols=347 Identities=12% Similarity=0.070 Sum_probs=256.6
Q ss_pred cccccCHHHHHHHHHHHhhhhhhHHccHHhHhhccCch-HHHHHHHHHHHHHHHHHHHHhhhhccccCCchhhhHHHHhc
Q 007943 69 MKKNLNWWDLIWFGIGAVMGAGIFVLTGEAARNFAGPA-VIISYLISGISALLSVLCYTEFSVELPVAGGSFAYLRVELG 147 (584)
Q Consensus 69 l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ii~~l~~~~~~~~~~el~~~~P~~Gg~y~~~~~~~g 147 (584)
.|++.+.+...++..|+.||+|++..|-.... .|-. +....++.++++...++.+.|...++|..-+....+++.+|
T Consensus 7 ~~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a~--~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~~g~~~~tma~~~LG 84 (414)
T PRK10483 7 TQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSG--AWFFWSMAALIFTWFCMLHSGLMILEANLNYRIGSSFDTITKDLLG 84 (414)
T ss_pred ccCCCcHHHHHHHHHHchHhHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHcC
Confidence 35679999999999999999999998876643 4544 77788899999999999999999999988899999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcceeccccccccCcchhHHHHHHHHHHHHHhccchhHHHH
Q 007943 148 DFVAYIAAGNILFEYVVSGASVARSWTSYFATLCNHDPGSFRIHVSSVAEDYSHLDPIAVIVSFFVCVGACLSMKGSSRF 227 (584)
Q Consensus 148 ~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 227 (584)
|.+..+.+..+.+-.-....++..+.++.++..++..+.+ .+ ...-.+++..+...+.+.|.|...|+
T Consensus 85 ~~g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~~~~~-------i~-----~~~~~llF~~~~~~iv~~gt~~vd~~ 152 (414)
T PRK10483 85 KGWNVVNGISIAFVLYILTYAYISASGSILHHTFAEMSLN-------VP-----ARAAGFGFALLVAFVVWLSTKAVSRM 152 (414)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhcCCC-------Cc-----HHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 9988887777777666777778888888888877531100 01 12567777888888889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccCCCCCCC---CCchhHHHHHHHHHHHhhchhhhhhhhcccccCCCCCchhHHHHH
Q 007943 228 NSVATIVHIVILIFILITGLTQANTANYAIFA---PNGVRGILKASAVLFFAYVGFDGVATLGEEVKNPGRDIPIGLIGS 304 (584)
Q Consensus 228 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~r~~p~ai~~~ 304 (584)
+.++...+++.++.++...+.+.+.++..+.. +..+...+.+++..+++|.-...+..+.+..++-.|+++|+++.+
T Consensus 153 n~~l~~~~i~~f~~~~~~l~~~i~~~~L~~~~~~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~~d~~kir~~I~iG 232 (414)
T PRK10483 153 TAIVLGAKVITFFLTFGSLLGHVQPATLFNVAESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYGKDPKTIVKCLVYG 232 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCHHHHhccccccchhHHHHHHHHHHHHhhccCCCcchHHHHHhCcCHHHHHHHHHHH
Confidence 99999999999888877777777665543221 122345778899999999999999999888876556899999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCC----CCC---hHHHHHH-HhCchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 007943 305 MVITITVYCVLSATLCLMQPYSQID----VDA---PFTLAFQ-AVGMNWAKYIVALGALKGMTTVLLANVIGQARYFTHI 376 (584)
Q Consensus 305 ~~~~~i~y~l~~~~~~~~~~~~~~~----~~~---p~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~ 376 (584)
..+..++|++...++.+..|+++.. .++ .+....+ ..+++....+..+...++..+|..+...+....+..+
T Consensus 233 s~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni~~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l~D~ 312 (414)
T PRK10483 233 TLMALALYTIWLLATMGNIPRPEFIGIAEKGGNIDVLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADL 312 (414)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999977642 222 2223333 4566788888888888888888888877777776654
Q ss_pred HhcCCCchhhhcccCccccchHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHH
Q 007943 377 GRTHMAPPFLAAINGKTGTPVNATVVMSLANSVVAFFTSLDVLANLLSISTLFIFSLVALALL 439 (584)
Q Consensus 377 ardg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i 439 (584)
-+-+ +++.+ .....+++.+...++.+...-..+..+.-.+.........+..+
T Consensus 313 ~k~~---------~~~~~-r~~~~~ltflPPl~~al~~P~~Fl~AL~yAG~~~~il~~ilP~l 365 (414)
T PRK10483 313 FGFD---------DSAMG-RFKTALLTFLPPVVGGLLFPNGFLYAIGYAGLAATIWAAIVPAL 365 (414)
T ss_pred hCCC---------Ccccc-ceeeehhhHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3221 11111 22234567777777777765555554444444444444444333
No 48
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=99.76 E-value=7.1e-15 Score=150.66 Aligned_cols=328 Identities=16% Similarity=0.161 Sum_probs=244.3
Q ss_pred CHHHHHHHHHHHhhhhhhHHccHHhHhhccCch-HHHHHHHHHHHHHHHHHHHHhhhhccccCCchhhhHHHHhchHHHH
Q 007943 74 NWWDLIWFGIGAVMGAGIFVLTGEAARNFAGPA-VIISYLISGISALLSVLCYTEFSVELPVAGGSFAYLRVELGDFVAY 152 (584)
Q Consensus 74 ~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ii~~l~~~~~~~~~~el~~~~P~~Gg~y~~~~~~~g~~~g~ 152 (584)
+.....++..|+.+|+|++..|-.... +|.. .....++.+.++...++.+.|.....|...+..+.+++.+||..++
T Consensus 4 ~~~g~~~li~GTaIGAGmLaLPi~~~~--~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~~~~~~~~~~a~~~LG~~g~~ 81 (403)
T PRK15132 4 RTLGSIFIVAGTTIGAGMLAMPLAAAG--VGFSVTLILLIGLWALMCYTALLLLEVYQHVPADTGLGTLAKRYLGRYGQW 81 (403)
T ss_pred cHHHHHHHHHhcchhHHHHHHHHHHHh--ChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhChHHHH
Confidence 566778889999999999999877643 5655 6777788888888899999998888887778999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcceeccccccccCcchhHHHHHHHHHHHHHhccchhHHHHHHHHH
Q 007943 153 IAAGNILFEYVVSGASVARSWTSYFATLCNHDPGSFRIHVSSVAEDYSHLDPIAVIVSFFVCVGACLSMKGSSRFNSVAT 232 (584)
Q Consensus 153 ~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 232 (584)
+.+..|++.......++..+.++.+...++..-. .+ .+ .....+.+.++...+.+.|.|...|++.++.
T Consensus 82 i~~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~-~~-----i~-----~~~~~l~F~~~~~~iv~~g~~~v~~~n~~L~ 150 (403)
T PRK15132 82 LTGFSMMFLMYALTAAYISGAGELLASSISDWTG-IS-----MS-----PTAGVLLFTLVAGGVVCVGTSSVDLFNRFLF 150 (403)
T ss_pred HHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhcc-CC-----CC-----hHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 9999999988888888888866666655532000 00 00 1144555566666688889999999999999
Q ss_pred HHHHHHHHHHHHHhhcccccCCCCCCCCCchhHHHHHHHHHHHhhchhhhhhhhcccccCCCCCchhHHHHHHHHHHHHH
Q 007943 233 IVHIVILIFILITGLTQANTANYAIFAPNGVRGILKASAVLFFAYVGFDGVATLGEEVKNPGRDIPIGLIGSMVITITVY 312 (584)
Q Consensus 233 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~r~~p~ai~~~~~~~~i~y 312 (584)
..+++.++.+......+.+.+++... +.+....+.+++..+++|.-...+..+....++-+|+++|+++.+..+..++|
T Consensus 151 ~~~ii~~~~~~~~l~p~~~~~~L~~~-~~~~~~~~~~iPvl~~SFgfh~iIpsl~~y~~~~~~~~~k~i~~Gs~i~li~y 229 (403)
T PRK15132 151 SAKIIFLVVMLALMMPHIHKVNLLTL-PLQQGLALSAIPVIFTSFGFHGSVPSIVSYMGGNIRKLRWVFIIGSAIPLVAY 229 (403)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHhcC-CccccHHHHHHHHHHHHhhCCcccHHHHHHhCcCHHHHHHHHHHHHHHHHHHH
Confidence 99999988887777777777776532 11112377888999999999999999999988777889999999999999999
Q ss_pred HHHHHHHHhccCCCCCC----CCC---hHHHHHH-HhCchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCch
Q 007943 313 CVLSATLCLMQPYSQID----VDA---PFTLAFQ-AVGMNWAKYIVALGALKGMTTVLLANVIGQARYFTHIGRTHMAPP 384 (584)
Q Consensus 313 ~l~~~~~~~~~~~~~~~----~~~---p~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~ardg~lP~ 384 (584)
++...++.+..|.++.. ++. +....++ ..++++...+..+...++..++..+...+....+..+-+.+
T Consensus 230 l~W~~~~lg~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~~~~---- 305 (403)
T PRK15132 230 IFWQLATLGSIDSTTFMGLLANHAGLNGLLQALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLADLFQRR---- 305 (403)
T ss_pred HHHHHHHHhCCCHHHHHHHHHccCchHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC----
Confidence 99999999999988642 222 3444444 56778898899999999999999988888888777654321
Q ss_pred hhhcccCccccchHHHHHHHHHHHHHHHhh--cHHHHHHHHHH
Q 007943 385 FLAAINGKTGTPVNATVVMSLANSVVAFFT--SLDVLANLLSI 425 (584)
Q Consensus 385 ~~~~~~~~~~~P~~ai~~~~~~~~~~~~~~--~~~~l~~~~~~ 425 (584)
+++.+ -....+++.+...++.... .|....+..+.
T Consensus 306 -----~~~~~-r~~~~~l~flppli~a~~~P~~F~~al~~aG~ 342 (403)
T PRK15132 306 -----NTVGG-RLQTGLITFLPPLAFALFYPRGFVMALGYAGV 342 (403)
T ss_pred -----ccccC-CchhehhhHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 11111 1223455666666666653 34444444443
No 49
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=99.73 E-value=7.6e-15 Score=148.55 Aligned_cols=286 Identities=16% Similarity=0.217 Sum_probs=243.0
Q ss_pred ccCHHHHHHHHHHHhhhhhhHHccHHhHhhccCchHHHHHHHHHHHHHHHHHHHHhhhhccccCCchhhhHHHHhchHHH
Q 007943 72 NLNWWDLIWFGIGAVMGAGIFVLTGEAARNFAGPAVIISYLISGISALLSVLCYTEFSVELPVAGGSFAYLRVELGDFVA 151 (584)
Q Consensus 72 ~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ii~~l~~~~~~~~~~el~~~~P~~Gg~y~~~~~~~g~~~g 151 (584)
++|.+|...+.+..++|+++...|+..+.. +| ++|++.+++++.....++.+..+.+++|+. +..++.++.+||..|
T Consensus 1 kIS~~Q~~~l~~~~~~g~~~l~~p~~l~~~-~~-d~Wi~~ll~~~~~l~~~~l~~~l~~~~p~~-~l~~~~~~~~Gk~lg 77 (320)
T PF03845_consen 1 KISPRQLFFLLISSIIGTGILFLPAILAEQ-AG-DAWISVLLGGLIGLLLALLIYYLLKRFPGK-TLVEISEKLFGKWLG 77 (320)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHH-cC-CcHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHhCcHHH
Confidence 478999999999999999999999999887 66 889999999999999999999999999987 599999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcceeccccccccCcchhHHHHHHHHHHHHHhccchhHHHHHHHH
Q 007943 152 YIAAGNILFEYVVSGASVARSWTSYFATLCNHDPGSFRIHVSSVAEDYSHLDPIAVIVSFFVCVGACLSMKGSSRFNSVA 231 (584)
Q Consensus 152 ~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 231 (584)
...+..+.+.+....+.....+++.++..+-.+.|.+ .+...+++.+......|.+..+|...+.
T Consensus 78 ~ii~~~~~l~~l~~~~~~lr~~~~~i~~~~lp~TP~~---------------~i~~~~ll~~~y~a~~G~e~i~R~~~~~ 142 (320)
T PF03845_consen 78 KIINLLYILYFLLISALVLREFSEFIKTYLLPETPIW---------------VIILLFLLVAAYAARKGIEVIARVAEIL 142 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCHH---------------HHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 9999999999999999999999999998876555543 6677777888888999999999998888
Q ss_pred HHHHHHHHHHHHHHhhcccccCCCCCCCCCchhHHHHHHHHHHHhhchhhhhhhhcccccCCCCCchhHHHHHHHHHHHH
Q 007943 232 TIVHIVILIFILITGLTQANTANYAIFAPNGVRGILKASAVLFFAYVGFDGVATLGEEVKNPGRDIPIGLIGSMVITITV 311 (584)
Q Consensus 232 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~r~~p~ai~~~~~~~~i~ 311 (584)
..+.+..++.+........+.++..|..+.|+.+.+.+.....+.|.|.|....+...+|||+ +..|....+...++++
T Consensus 143 ~~~~~i~~~~i~~~~~~~~~~~~l~P~~~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~~-~~~k~~~~~~~~~~~~ 221 (320)
T PF03845_consen 143 FPIFLILLLLILLLSIPNIDWDNLLPVLESGIKPILKGSLVISFPFGGIEILLFLFPFVKDKK-KLKKSLLIAILISGLF 221 (320)
T ss_pred HHHHHHHHHHHHHHhcccCCHHHeeCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCch-HHHHHHHHHHHHHHHH
Confidence 888888888777777778888899999999999999999999999999999999999999975 5689999999999999
Q ss_pred HHHHHHHHHhccCCCCCCC-CChHHHHHHHhCch-HH---HHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 007943 312 YCVLSATLCLMQPYSQIDV-DAPFTLAFQAVGMN-WA---KYIVALGALKGMTTVLLANVIGQARYFTHI 376 (584)
Q Consensus 312 y~l~~~~~~~~~~~~~~~~-~~p~~~~~~~~g~~-~~---~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~ 376 (584)
|....+......+++..+. .-|..+..+....+ .. ..++...-..+.+......+++.++.+..+
T Consensus 222 ~~~~~~~~i~vfG~~~~~~~~~P~~~~~~~i~i~~fieRld~~~i~~w~~~~~~~~~~~~~~~~~~~~~~ 291 (320)
T PF03845_consen 222 LLFIIFITIGVFGPELAKKLTYPVLELARSIEIGDFIERLDSIFILIWIIGIFIKISLYLYAASEGLSQL 291 (320)
T ss_pred HHHHHHHHHHhcCHHHHhceecHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999888888876644 56888888854433 33 334444445555556666777777776554
No 50
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=99.70 E-value=8.5e-14 Score=144.56 Aligned_cols=285 Identities=14% Similarity=0.117 Sum_probs=227.7
Q ss_pred ccccccCHHHHHHHHHHHhhhhhhHHccHHhHhhccCch-HHHHHHHHHHHHHHHHHHHHhhhhccccCC-chhhhHHHH
Q 007943 68 EMKKNLNWWDLIWFGIGAVMGAGIFVLTGEAARNFAGPA-VIISYLISGISALLSVLCYTEFSVELPVAG-GSFAYLRVE 145 (584)
Q Consensus 68 ~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ii~~l~~~~~~~~~~el~~~~P~~G-g~y~~~~~~ 145 (584)
+.+++-+..+.+.+..++.+|+|++..|-.. ..+|-. .++..++.+.++....+.+.|...+.|+.. +.++-+++.
T Consensus 4 ~~~~~~s~~~~vl~l~gT~IGAGvL~lP~a~--~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~~~~~~~~~~~~~ 81 (415)
T COG0814 4 SMKKTSSDLGGVLILAGTAIGAGVLFLPVAF--GGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPNGKASITSLVEDY 81 (415)
T ss_pred cccCCcchHHHHHHHHccccccchhhhhHHh--cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHH
Confidence 4567788888999999999999999888665 225655 777889999999999999999999999884 899999999
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcceeccccccccCcchhHHHHHHHHHHHHHhccchhHH
Q 007943 146 LGDFVAYIAAGNILFEYVVSGASVARSWTSYFATLCNHDPGSFRIHVSSVAEDYSHLDPIAVIVSFFVCVGACLSMKGSS 225 (584)
Q Consensus 146 ~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 225 (584)
+||.++++.+..+.+.......++....++.+...++....... .......+++...+..+...|.+...
T Consensus 82 ~G~~~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~~~----------~~r~~~~lif~~~~~~l~~~~~~~~l 151 (415)
T COG0814 82 LGKKGGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFGLNP----------LPRKLGSLIFALVLAFLSWLGTLAVL 151 (415)
T ss_pred hCcchHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhcccCC----------cchHHHHHHHHHHHHHHHHhchhHHH
Confidence 99999999999999999999999999999999888764211100 01225666677777778899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccCCCCCC--C-CCchhHHHHHHHHHHHhhchhhhhhhhcccccCCCCC-chhHH
Q 007943 226 RFNSVATIVHIVILIFILITGLTQANTANYAIF--A-PNGVRGILKASAVLFFAYVGFDGVATLGEEVKNPGRD-IPIGL 301 (584)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~-~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~r~-~p~ai 301 (584)
|.+..+...+++.++++......+.+.++.... . +..+..++.+++..+++|.+......+..|+|+++++ ++|++
T Consensus 152 k~ts~l~~~~v~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~~~~~~k~~ 231 (415)
T COG0814 152 KITSLLVFGKVIYLVLLVVYLIPHWNPANLFALPSASQSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNSKKAVRKAI 231 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCHHHHhcccccchhhHHHHHHHhhHHHhhhhCCccchHHHHHhccchhHHHHHHH
Confidence 999999999999999998888887766654322 2 2456788999999999999999999999999988777 99999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCC-------CCChHHHHHH-HhCchHHHHHHHHHHHHHHHHHHHH
Q 007943 302 IGSMVITITVYCVLSATLCLMQPYSQID-------VDAPFTLAFQ-AVGMNWAKYIVALGALKGMTTVLLA 364 (584)
Q Consensus 302 ~~~~~~~~i~y~l~~~~~~~~~~~~~~~-------~~~p~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~ 364 (584)
..+..+..++|+...+....+.+.+..+ ++.....+.. ....+.......+....+..++..+
T Consensus 232 ~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~Ai~tSFlg 302 (415)
T COG0814 232 LIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQNISLLSALAGVINSPILSIALNIFALFAIATSFLG 302 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccCchHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999998888876431 1233444433 3455556666666666666555443
No 51
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=99.68 E-value=3.5e-13 Score=137.42 Aligned_cols=288 Identities=11% Similarity=0.093 Sum_probs=226.2
Q ss_pred HHHHHHhhhhhhHHccHHhHhhccCch-HHHHHHHHHHHHHHHHHHHHhhhhcc-ccCCchhhhHHHHhchHHHHHHHHH
Q 007943 80 WFGIGAVMGAGIFVLTGEAARNFAGPA-VIISYLISGISALLSVLCYTEFSVEL-PVAGGSFAYLRVELGDFVAYIAAGN 157 (584)
Q Consensus 80 ~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ii~~l~~~~~~~~~~el~~~~-P~~Gg~y~~~~~~~g~~~g~~~g~~ 157 (584)
....|+.+|+|++..|-.... +|.. .++..+++..++...++.+.|..... |...+.-+-+++.+||.+|.+.+..
T Consensus 26 l~l~GTAIGAGmLfLPI~~g~--~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~~~~~~i~~v~~~~lG~~g~~i~~il 103 (443)
T PRK13629 26 LGLFGTAIGAGVLFFPIRAGF--GGLIPILLMLVLAYPIAFYCHRALARLCLSGSNPSGNITETVEEHFGKTGGVVITFL 103 (443)
T ss_pred HHHHHHHHhHHHHHHHHHHhc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHcChhHHHHHHHH
Confidence 556788899999999976632 5655 67778888888999999999999888 6666788889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCCCcceeccccccccCcchhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHH
Q 007943 158 ILFEYVVSGASVARSWTSYFATLCNHDPGSFRIHVSSVAEDYSHLDPIAVIVSFFVCVGACLSMKGSSRFNSVATIVHIV 237 (584)
Q Consensus 158 ~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 237 (584)
|++.......++.....+.+.+.+...- +. +..+ ..+..++++.+...+...|.|...|++.++...+++
T Consensus 104 Yff~ly~ll~aY~~~itn~l~sfl~~ql-~~----~~~~-----r~l~slifv~~l~~iv~~G~~~v~kv~~~Lv~~~i~ 173 (443)
T PRK13629 104 YFFAICPLLWIYGVTITNTFMTFWENQL-GF----APLN-----RGFVALFLLLLMAFVIWFGKDLMVKVMSYLVWPFIA 173 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc-Cc----CCcc-----HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 9999988888888777777776532210 00 0001 226778888888899999999999999999999999
Q ss_pred HHHHHHHHhhcccccCCCCCCC----CC----c-hhHHHHHHHHHHHhhchhhhhhhhccc----cc------CCCCCch
Q 007943 238 ILIFILITGLTQANTANYAIFA----PN----G-VRGILKASAVLFFAYVGFDGVATLGEE----VK------NPGRDIP 298 (584)
Q Consensus 238 ~~~~~~i~~~~~~~~~~~~~~~----~~----g-~~~~~~~~~~~~~~~~G~e~~~~~a~E----~k------~p~r~~p 298 (584)
.++.+.+..+.+.+.+++.... +. + ....+.+++..+++|.-...+..++.. .+ +.+|+..
T Consensus 174 ~l~~l~~~LiP~w~~~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k~~ 253 (443)
T PRK13629 174 SLVLISLSLIPYWNSAVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCS 253 (443)
T ss_pred HHHHHHHHHHHHcCHHHHhcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHHHH
Confidence 9999999999988877765221 11 1 124778888999999877777776655 32 2247788
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhccCCCCCC----CCCh-HHHHHHHhCc---------hHHHHHHHHHHHHHHHHHHHH
Q 007943 299 IGLIGSMVITITVYCVLSATLCLMQPYSQID----VDAP-FTLAFQAVGM---------NWAKYIVALGALKGMTTVLLA 364 (584)
Q Consensus 299 ~ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~----~~~p-~~~~~~~~g~---------~~~~~~~~~~~~~~~~~~~~~ 364 (584)
|++..+..+..++|++..+.+.+..++++.. ++.+ +...++..++ +....+..+...++..++.++
T Consensus 254 rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TSFlG 333 (443)
T PRK13629 254 QIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAIFKSFFG 333 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998863 3445 6666666665 778888888888899999999
Q ss_pred HHhhhHHHHHHHHhc
Q 007943 365 NVIGQARYFTHIGRT 379 (584)
Q Consensus 365 ~~~~~sR~l~~~ard 379 (584)
...+..-.+..+.++
T Consensus 334 v~LGl~E~l~gl~~~ 348 (443)
T PRK13629 334 HYLGTLEGLNGLILK 348 (443)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888888888754
No 52
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=99.41 E-value=2.3e-10 Score=116.46 Aligned_cols=344 Identities=16% Similarity=0.167 Sum_probs=212.6
Q ss_pred ccccccCHHHHHHHHHHHhhhhhhHHccHHhHhhccCchHHHHHHHHHHHHHHHHHHHHhhhhccc-------cCCchhh
Q 007943 68 EMKKNLNWWDLIWFGIGAVMGAGIFVLTGEAARNFAGPAVIISYLISGISALLSVLCYTEFSVELP-------VAGGSFA 140 (584)
Q Consensus 68 ~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ii~~l~~~~~~~~~~el~~~~P-------~~Gg~y~ 140 (584)
+-+++++.+|.++.+++..+|+|-......++.. |||++++...+.+++...+.++=.-|+.++. -.||...
T Consensus 14 ~~~g~iS~fqA~~~ala~~vG~GNI~GVa~AI~~-GGPGAiFWMWi~a~~Gmatk~~E~~La~~yR~~~~~G~~~GGP~y 92 (416)
T PF01235_consen 14 EEEGGISPFQALCTALAGTVGTGNIAGVATAIAI-GGPGAIFWMWISALLGMATKYAEVTLAQKYREKDEDGEYRGGPMY 92 (416)
T ss_pred CCCCCcChHHHHHHHHHhccCcchHHHHHHHHHh-hchhHHHHHHHHHHHHHHHHHHHHHHHHHheEECCCCCEeecHHH
Confidence 3456899999999999999999998888888877 9999655555566666666666555665554 2488999
Q ss_pred hHHHHhch-HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHccCCCCCcceeccccccccCcchhHHHHHHHHHHHHHh
Q 007943 141 YLRVELGD-FVAYIAAGNILFEYVVS-GASVARSWTSYFATLCNHDPGSFRIHVSSVAEDYSHLDPIAVIVSFFVCVGAC 218 (584)
Q Consensus 141 ~~~~~~g~-~~g~~~g~~~~l~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (584)
|.++.+|. +++.+.+......+... ....+...++.++..++.+ ....++++.++..++..
T Consensus 93 yi~~gl~~k~la~~fai~~~~~~~~~~~~~Q~nsi~~~~~~~f~i~-----------------~~~~gi~l~~l~~~vi~ 155 (416)
T PF01235_consen 93 YIEKGLGSKWLAILFAIFLIIAFGIGFNMVQANSIADALSSAFGIP-----------------PWITGIILAILVALVIF 155 (416)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcccc-----------------HHHHHHHHHHHHHHHHH
Confidence 99999995 44444444433444333 4444555555555444321 11566777777788888
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCC---------CCCCCch-hHHHH---------HHHHHHHhh--
Q 007943 219 LSMKGSSRFNSVATIVHIVILIFILITGLTQANTANYA---------IFAPNGV-RGILK---------ASAVLFFAY-- 277 (584)
Q Consensus 219 ~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---------~~~~~g~-~~~~~---------~~~~~~~~~-- 277 (584)
-|+|..+++...+..++.+.-++..+..+.. +.++.. .|.+... .++.. ++.=.+|+-
T Consensus 156 GGikrI~~v~~~lVP~Ma~~Yi~~~l~ii~~-n~~~ip~~~~~If~~AF~~~aa~GG~~G~~i~~ai~~Gv~Rg~fSNEA 234 (416)
T PF01235_consen 156 GGIKRIAKVSEKLVPFMAILYILGGLIIIII-NIDQIPAAFSLIFSSAFTPKAAFGGFAGSTIMMAIRQGVARGLFSNEA 234 (416)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHcCCccchhhHHHHHHHHHHHHhhhhhhccCCC
Confidence 9999999999999988888776665554432 222211 2333321 11111 111123433
Q ss_pred -chhhhhhhhcccccCCCCCchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCC---CChHHHHHHHhCchHHHHHHHHH
Q 007943 278 -VGFDGVATLGEEVKNPGRDIPIGLIGSMVITITVYCVLSATLCLMQPYSQIDV---DAPFTLAFQAVGMNWAKYIVALG 353 (584)
Q Consensus 278 -~G~e~~~~~a~E~k~p~r~~p~ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~~---~~p~~~~~~~~g~~~~~~~~~~~ 353 (584)
.|....+|-+.|+++|.|+--.++.-..+-+.++..++.+.+...-.++.... .+-...+++..-+++...++.++
T Consensus 235 G~Gsa~~a~a~a~~~hP~~QGl~~~~~vFiDTiiVCt~TalvIl~tG~~~~~~~~~g~~l~~~Af~~~~g~~g~~~v~i~ 314 (416)
T PF01235_consen 235 GLGSAPIAHAAAETDHPVRQGLVQMFEVFIDTIIVCTITALVILVTGVWSWGSGLEGAALTQAAFSTVLGSWGPYFVAIA 314 (416)
T ss_pred CCChhHHHHHHhcCCCcHHHeeeeeehHhHHHHHHHHHHHHHhhccCCCCCCCcchHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 37777778888999998876666666666566666666666655433222111 12234555654557888899999
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhcCCCchhhhcccCccccchHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHH
Q 007943 354 ALKGMTTVLLANVIGQARYFTHIGRTHMAPPFLAAINGKTGTPVNATVVMSLANSVVAFFTSLDVLANLLSISTLFIFSL 433 (584)
Q Consensus 354 ~~~~~~~~~~~~~~~~sR~l~~~ardg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 433 (584)
.++-.+++.+++.+..-+-+.-+- ++ +|...+++.+.+..+ .+..+.+.+.+-++......+.-+.
T Consensus 315 l~lFafTTilg~~~yge~~~~yl~-~~----------~~~~~~~ri~~i~~~---~~G~~~~~~~vW~~~Di~~~lmai~ 380 (416)
T PF01235_consen 315 LFLFAFTTILGWYYYGEKCAEYLF-GG----------KKAIWIYRILFIAMV---FIGAVIDLDLVWDLADIANGLMAIP 380 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc-CC----------ceEEEeeeehhhhhh---hhhhcccchhHHHHHHHHHHHHHHH
Confidence 999999999999888888776654 11 233345554432222 2222334455555555555444444
Q ss_pred HHHHHHhhhhh
Q 007943 434 VALALLVRRYY 444 (584)
Q Consensus 434 ~~~~~i~~r~~ 444 (584)
..++++.+++.
T Consensus 381 Nlial~lL~~~ 391 (416)
T PF01235_consen 381 NLIALLLLSKE 391 (416)
T ss_pred HHHHHHHhHHH
Confidence 44555555543
No 53
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.35 E-value=5.2e-10 Score=115.48 Aligned_cols=278 Identities=14% Similarity=0.145 Sum_probs=194.2
Q ss_pred ccccccCHHHHHHHHHHHhhhhhhHHccHHhHhhccCch-HHHHHHHHHHHHHHHHHHHHhhhhccccCCc-----hhhh
Q 007943 68 EMKKNLNWWDLIWFGIGAVMGAGIFVLTGEAARNFAGPA-VIISYLISGISALLSVLCYTEFSVELPVAGG-----SFAY 141 (584)
Q Consensus 68 ~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ii~~l~~~~~~~~~~el~~~~P~~Gg-----~y~~ 141 (584)
..+|+-++++..+-.++.++|.|+...| .+..+ .|.. .+...++.+++.+.++..+.++-..++.-.| +-+-
T Consensus 33 ~~~~~~s~~~a~~~~i~~~~G~gvLsLP-~A~~~-lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r~~~Y~dl 110 (437)
T KOG1303|consen 33 TPSRGGSWWQAAFHIINALIGAGVLSLP-YALAQ-LGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGKRRYRYPDL 110 (437)
T ss_pred ccCCCCcceehhhheehhhhhhhhhhhH-HHHHh-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCChHHH
Confidence 3468899999999999999999999888 44455 7766 5888899999999999999999998887777 7777
Q ss_pred HHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcceeccccccccCcchhHHHHHHHHH-HHHHhcc
Q 007943 142 LRVELGDFVAYIAAGNILFEYVVSGASVARSWTSYFATLCNHDPGSFRIHVSSVAEDYSHLDPIAVIVSFFV-CVGACLS 220 (584)
Q Consensus 142 ~~~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g 220 (584)
++++||+..-.++++...+.....+..+....++.++.+++....+.. ... .. ...+++..+. ...-+..
T Consensus 111 ~~~afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~----~l~-~~----~f~iif~~i~~~~s~lp~ 181 (437)
T KOG1303|consen 111 GQAAFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDN----SLD-KQ----YFIIIFGLIVLPLSQLPN 181 (437)
T ss_pred HHHHhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc----ccc-ce----ehhhhHHHHHHHHHHCCC
Confidence 889999877778888888888888888999999999988765432210 000 00 1111111121 2222344
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhcccccC-----CCCCCCCCchhHHHHHHHHHHHhhchhhhhhhhcccccCCCC
Q 007943 221 MKGSSRFNSVATIVHIVILIFILITGLTQANTA-----NYAIFAPNGVRGILKASAVLFFAYVGFDGVATLGEEVKNPGR 295 (584)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~r 295 (584)
.....++.....+..+........++..++-.. ......+.+. .+.++....|+|.|......+-..+|+|++
T Consensus 182 ~~~l~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~~~~~~--~f~a~g~iaFaf~gH~v~peIq~tMk~p~~ 259 (437)
T KOG1303|consen 182 FHSLSYLSLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLDLGTIPT--VFTALGIIAFAYGGHAVLPEIQHTMKSPPK 259 (437)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhccccccCCcccCcccCCCCcc--hhhhhhheeeeecCCeeeeehHhhcCCchh
Confidence 444555555555555555555555555554222 1112222221 167888899999999999999999999987
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHh-CchHHHHHHHHHHHHHHHHHHHHH
Q 007943 296 DIPIGLIGSMVITITVYCVLSATLCLMQPYSQIDVDAPFTLAFQAV-GMNWAKYIVALGALKGMTTVLLAN 365 (584)
Q Consensus 296 ~~p~ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~p~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~ 365 (584)
++|+.+.+...++.+|+..++.-....+++..+ +..... ...|.....++++.+-.+++..-.
T Consensus 260 -f~~~~lis~~~~~~~y~~vai~GY~aFG~~~~~------~il~s~~~p~~~~~~ani~i~~h~i~s~~i~ 323 (437)
T KOG1303|consen 260 -FKKALLISYIIVTFLYFPVAIIGYWAFGDSVPD------NILLSLQPPTWLIALANILIVLHLIGSYQIY 323 (437)
T ss_pred -hhhHHHHHHHHHHHHHHHHHHhhhhhhccccch------hhhhcccCchhHHHHHHHHHHHHHhhhhhhh
Confidence 999999999999999999998877777654321 222333 356777777777777776655433
No 54
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.35 E-value=8.6e-10 Score=111.98 Aligned_cols=355 Identities=13% Similarity=0.075 Sum_probs=210.4
Q ss_pred ccccCHHHHHHHHHHHhhhhhhHHccHHhHhhccCch-HHHHHHHHHHHHHH----HHHHHHhhhhccccC---------
Q 007943 70 KKNLNWWDLIWFGIGAVMGAGIFVLTGEAARNFAGPA-VIISYLISGISALL----SVLCYTEFSVELPVA--------- 135 (584)
Q Consensus 70 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ii~~l~~~~----~~~~~~el~~~~P~~--------- 135 (584)
++..+..+.+.--+-+++|+|++..|... .. +|-. ..+..++.+.+++. ..-+-.++.++.-.+
T Consensus 44 ~~~~s~~~tl~hl~k~~iGtG~l~lP~AF-k~-sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~ 121 (449)
T KOG1304|consen 44 EHPTSATQTLIHLLKGSIGTGILSLPLAF-KN-SGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAE 121 (449)
T ss_pred CCCCchHHHHHHHHHhhhccccccChHHH-Hh-cchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHH
Confidence 34588888888888999999998777654 34 6754 44443333333333 333444555553111
Q ss_pred ---CchhhhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC-CCcceeccccccccCcchhHHHHHHH
Q 007943 136 ---GGSFAYLRVELGDFVAYIAAGNILFEYVVSGASVARSWTSYFATLCNHDP-GSFRIHVSSVAEDYSHLDPIAVIVSF 211 (584)
Q Consensus 136 ---Gg~y~~~~~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (584)
.+.+.| .|.+||...+++-....+.+...+.++....++.+++.++... ..+. ......+.+.
T Consensus 122 ~a~~~~~~~-~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~~~~~~s------------~~~~i~~~~~ 188 (449)
T KOG1304|consen 122 SAMEGGPGW-LRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEHSPGVLS------------VRLYILIQLP 188 (449)
T ss_pred HHHcCCcHH-HHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhccCCCCcc------------HHHHHHHHHH
Confidence 112225 6789999999999999999999999999999999999987321 2221 1122233333
Q ss_pred HHHHHH-hccchhHHHHHHHHHHHHHHHHHHHHHHhhcccc-cCCCCCCCCCchhHHHHHHHHHHHhhchhhhhhhhccc
Q 007943 212 FVCVGA-CLSMKGSSRFNSVATIVHIVILIFILITGLTQAN-TANYAIFAPNGVRGILKASAVLFFAYVGFDGVATLGEE 289 (584)
Q Consensus 212 ~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E 289 (584)
....+| .+..|...-+..+.-++.++.++++..-.+.... .+....+ .++.++...+..++|+|-|...+..+=++
T Consensus 189 ~~lll~~Ir~Lk~Lsp~Sl~Anv~~~~g~~ii~~y~~~~~~~~~~~~~~--~~~~~~~lf~GtaifafEGig~VLPlEn~ 266 (449)
T KOG1304|consen 189 PLLLLNLIRNLKILSPFSLFANVFILVGLAIIMYYLVQDLPPTSDLPAV--TGWSGLPLFFGTAIFAFEGIGMVLPLENS 266 (449)
T ss_pred HHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHhccCCccccccc--cchhhhHHHHHHHHHHhccceEEEehhhc
Confidence 333333 3455555555555555555555444444333222 1111122 23677888899999999999999999999
Q ss_pred ccCCCCCch---hHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH
Q 007943 290 VKNPGRDIP---IGLIGSMVITITVYCVLSATLCLMQPYSQIDVDAPFTLAFQAVGMNWAKYIVALGALKGMTTVLLANV 366 (584)
Q Consensus 290 ~k~p~r~~p---~ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 366 (584)
+|+|+ +.| +.+-.++.++.++|......-+...+++..++-. -+....+++..+-+...++.+-+.--.+
T Consensus 267 Mk~P~-~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sIT------LNLP~~~l~~~Vkl~~ai~I~ls~pLQ~ 339 (449)
T KOG1304|consen 267 MKKPQ-KFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSIT------LNLPQEILSQTVKLLLAIAIFLTYPLQF 339 (449)
T ss_pred ccChh-hcCCccchHHHHHHHHHHHHHHHHHHHHhhccccccceEE------ecCCccHHHHHHHHHHHHHHHHcCchhh
Confidence 99995 578 9999999999999999888877777765543200 0111123333444444445554555556
Q ss_pred hhhHHHHHHHHhcCCCchhhhcccCccccchHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Q 007943 367 IGQARYFTHIGRTHMAPPFLAAINGKTGTPVNATVVMSLANSVVAFFTSLDVLANLLSISTLFIFSLVALALLVRRYYVA 446 (584)
Q Consensus 367 ~~~sR~l~~~ardg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~r~~~~ 446 (584)
+..-++++.-=+.+.-+++ .|.- ++..-..-++++.+++ .++.+++.++++.+......-.++.-+++-..-..+
T Consensus 340 yv~~eIi~~~i~~k~~~~~-~~~~-~~~~R~~lVllt~~iA---~~iPnL~~fisLVGs~~~s~L~li~P~liel~~~~~ 414 (449)
T KOG1304|consen 340 YVPIEIIEPGIRKKFSENR-KKLL-EYALRVFLVLLTFLIA---VAVPNLALFISLVGSVSCSLLALIFPPLIELITFYP 414 (449)
T ss_pred hhhHHHHHHhHHHhcCcch-hHHH-HHHHHHHHHHHHHHHH---HHCCcHHhhHHHHHHHHHHHHHHHccHHHHHHHhcc
Confidence 6666666643122111111 1111 1111122222222222 225788899999887777666666666666666555
Q ss_pred CCCCccc
Q 007943 447 GETSECD 453 (584)
Q Consensus 447 ~~~~~~~ 453 (584)
+...+.+
T Consensus 415 ~~~~~~~ 421 (449)
T KOG1304|consen 415 EGKGRFM 421 (449)
T ss_pred cccCcee
Confidence 5443333
No 55
>PLN03074 auxin influx permease; Provisional
Probab=99.33 E-value=5.8e-09 Score=110.26 Aligned_cols=236 Identities=8% Similarity=0.049 Sum_probs=139.5
Q ss_pred ccCHHHHHHHHHHHhhhhhhHHccHHhHhhccCch-HHHHHHHHHHHHHHHHHHHHh----hhhccccCCch--------
Q 007943 72 NLNWWDLIWFGIGAVMGAGIFVLTGEAARNFAGPA-VIISYLISGISALLSVLCYTE----FSVELPVAGGS-------- 138 (584)
Q Consensus 72 ~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ii~~l~~~~~~~~~~e----l~~~~P~~Gg~-------- 138 (584)
.-+..+.++-.+.+.+|.|++..|.... + +|.. .++..++.++++...+..+.+ ...+.|+.+-.
T Consensus 45 ~~s~~~~~~~l~~~~vG~GILaLP~Af~-~-~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~~~ 122 (473)
T PLN03074 45 GGSVYDAWFSCASNQVAQVLLTLPYSFS-Q-LGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVIQW 122 (473)
T ss_pred CchHHHHHHHHHHHHHhHHHHhHHHHHH-H-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHHHH
Confidence 4666666677888899999998776653 3 6765 677788888887777776664 55566653321
Q ss_pred hhhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-CCCCcceeccccccccCcchhHHHHHHHHHHHHH
Q 007943 139 FAYLRVELGDFVAYIAAGNILFEYVVSGASVARSWTSYFATLCNH-DPGSFRIHVSSVAEDYSHLDPIAVIVSFFVCVGA 217 (584)
Q Consensus 139 y~~~~~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (584)
.+-+++.+||.++........+.....+..+....++.+..+... +...| ..+..++.+.+ .-
T Consensus 123 ~e~~~~~~G~~~~~~~~~~~~v~l~~~~v~~li~~~~~~~~l~~~~~~~~~-------------~~i~~~v~~~~---~~ 186 (473)
T PLN03074 123 FEVLDGLLGPYWKNVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTW-------------TYIFGACCATT---VF 186 (473)
T ss_pred HHHHHHhcChhHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhCCCcCCCeE-------------EeehHHHHHHH---HH
Confidence 222345689988887765555555554444444444333332111 00111 11222222222 12
Q ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCCCCchhHHHHHHHHHHHhhchhhhhhhhcccccCCCCCc
Q 007943 218 CLSMKGSSRFNSVATIVHIVILIFILITGLTQANTANYAIFAPNGVRGILKASAVLFFAYVGFDGVATLGEEVKNPGRDI 297 (584)
Q Consensus 218 ~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~r~~ 297 (584)
....+..+++..+.....+.....+.+......+......-.+.++..++.++...+|+|.|.-....+-.|||||+ +.
T Consensus 187 i~sl~~l~~~S~ig~~~tl~~av~i~i~~i~~~~~~~~~~~~~~~~~~~f~~~~~i~faf~g~~v~~~I~~~M~~P~-~F 265 (473)
T PLN03074 187 IPSFHNYRIWSFLGLLMTTYTAWYMTIAALSHGQVEGVKHSGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQ-KF 265 (473)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCchhHHHHHHHHHHHHHHhcccccHHHHHHhccChh-cc
Confidence 34455555554444333333222333333333332222211233455677777789999999999999999999995 58
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 007943 298 PIGLIGSMVITITVYCVLSATLCLMQPYS 326 (584)
Q Consensus 298 p~ai~~~~~~~~i~y~l~~~~~~~~~~~~ 326 (584)
++....+...+...|+...+......+++
T Consensus 266 ~~~~~l~~~~v~~~y~~~~~~gY~~fG~~ 294 (473)
T PLN03074 266 KYIYLAATLYVLTLTLPSAAAVYWAFGDE 294 (473)
T ss_pred cchHHHHHHHHHHHHHHHHHeeeeeechh
Confidence 88888888888888888766665556554
No 56
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=99.28 E-value=1.7e-08 Score=103.57 Aligned_cols=285 Identities=14% Similarity=0.194 Sum_probs=171.5
Q ss_pred cccCHHHHHHHHHHHhhhhhhHHccHHhHhhccCchHHHHHHHHHHHHHHHHHHHHhhhhccc---c----CCchhhhHH
Q 007943 71 KNLNWWDLIWFGIGAVMGAGIFVLTGEAARNFAGPAVIISYLISGISALLSVLCYTEFSVELP---V----AGGSFAYLR 143 (584)
Q Consensus 71 r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ii~~l~~~~~~~~~~el~~~~P---~----~Gg~y~~~~ 143 (584)
++++.+|.++.+++..+|+|-......++.. +||++++...+++++.....+.-.-++.++. + .||...|.+
T Consensus 45 g~iS~fqA~~~ala~~VG~GnI~Gva~Ai~~-GGpGAvFWMWI~allGm~~~~~e~~L~~~yr~~~~~g~~~GGP~yyi~ 123 (425)
T TIGR00835 45 GGVSSFQALFTSLAARVGIGNIVGVATAIAI-GGPGAVFWMWVTAFIGMATKFVESTLAQKYRERDADGVFRGGPMYYIK 123 (425)
T ss_pred CCccHHHHHHHHHHHHHhhhHHHHHHHHHHh-cCCCchHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCEecChHHHHH
Confidence 4699999999999999999844455555555 9998533333344443344333333333332 2 245557888
Q ss_pred HHhc-hHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHccCCCCCcceeccccccccCcchhHHHHHHHHHHHHHhccc
Q 007943 144 VELG-DFVAYIAAGNILFEY-VVSGASVARSWTSYFATLCNHDPGSFRIHVSSVAEDYSHLDPIAVIVSFFVCVGACLSM 221 (584)
Q Consensus 144 ~~~g-~~~g~~~g~~~~l~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 221 (584)
+.++ |++|.+.... .+.+ .......+...++.++..++. +. ...++++.++...+..-|+
T Consensus 124 ~gl~~k~lg~lfa~~-~i~~f~~~~~~Q~nsi~~~~~~~~~~--~~---------------~v~~i~l~~l~~~vi~GGi 185 (425)
T TIGR00835 124 KGLGMRWLAVLFAVF-LIASFGIGNMVQANAIASALSNAFNV--PK---------------LVTGIVLTVLTALIIFGGL 185 (425)
T ss_pred HHhCccHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHcCC--cH---------------HHHHHHHHHHHHHHHhcCc
Confidence 7766 7778777766 4444 445666777777777754421 11 1556666666666666799
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCC---------CCCCCch-hHHHH---------HHHHHHHhh---ch
Q 007943 222 KGSSRFNSVATIVHIVILIFILITGLTQANTANYA---------IFAPNGV-RGILK---------ASAVLFFAY---VG 279 (584)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---------~~~~~g~-~~~~~---------~~~~~~~~~---~G 279 (584)
|..+++...+..++....+...+.... .+.++.. .|.+... .++.. ++.=..|+- .|
T Consensus 186 k~Ia~v~~~lvP~m~~~Y~~~~l~ii~-~n~~~lp~~~~~If~~AF~~~a~~GG~~G~~v~~ai~~Gv~Rg~fSNEAG~G 264 (425)
T TIGR00835 186 KRIAKISSVVVPFMALLYVIMALYIII-MNIEQLPAVISLIFRSAFGGDAAAGGFAGSTVAQAIMIGVKRGLFSNEAGMG 264 (425)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHHhhHHHHhccccccC
Confidence 999999999998887776544443222 2333322 2333221 11111 222234443 36
Q ss_pred hhhhhhhcccccCCCCCchhHHHHHHHHHHHHHHHHHHHHHhccCCC---CCCCCChHH-HHHHHhCchHHHHHHHHHHH
Q 007943 280 FDGVATLGEEVKNPGRDIPIGLIGSMVITITVYCVLSATLCLMQPYS---QIDVDAPFT-LAFQAVGMNWAKYIVALGAL 355 (584)
Q Consensus 280 ~e~~~~~a~E~k~p~r~~p~ai~~~~~~~~i~y~l~~~~~~~~~~~~---~~~~~~p~~-~~~~~~g~~~~~~~~~~~~~ 355 (584)
....+|-+.|+++|.|+=-.++.-..+=+.++..++.+.+.....++ ..+ ...+. .+++..-+++...++.++.+
T Consensus 265 sa~~a~a~a~~~hP~~QGl~~~~~vfiDTivvCt~Talvil~tg~~~~~~~~~-g~~lt~~af~~~~g~~g~~~v~i~~~ 343 (425)
T TIGR00835 265 SAPIAAAAAQVSHPVRQGLVQMLGVFIDTMIVCTATALVILLSGVWNNGEGLS-GAQLTQQALSYGLGSFGAVFVAVALF 343 (425)
T ss_pred cHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCCCCCCc-HHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 66777778888999876555555444445555556666544433332 111 12222 34555344678889999999
Q ss_pred HHHHHHHHHHHhhhHHHHHHH
Q 007943 356 KGMTTVLLANVIGQARYFTHI 376 (584)
Q Consensus 356 ~~~~~~~~~~~~~~sR~l~~~ 376 (584)
+..+++.+++.+..-+-+.-+
T Consensus 344 lFaftTii~~~yyge~~~~yl 364 (425)
T TIGR00835 344 LFAFSTIIGWYYYGEKNAEFL 364 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 999999999988887777655
No 57
>PRK11375 allantoin permease; Provisional
Probab=99.21 E-value=1.9e-07 Score=99.37 Aligned_cols=330 Identities=11% Similarity=0.021 Sum_probs=168.8
Q ss_pred cccccccCHHHHHHHHHHHhhhhhhHHccHHhHhhccCch-HHHHHHHHHHHHHHHHHHHHhhhhccccCCchhhhHHHH
Q 007943 67 HEMKKNLNWWDLIWFGIGAVMGAGIFVLTGEAARNFAGPA-VIISYLISGISALLSVLCYTEFSVELPVAGGSFAYLRVE 145 (584)
Q Consensus 67 ~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ii~~l~~~~~~~~~~el~~~~P~~Gg~y~~~~~~ 145 (584)
++.+|+-++++.+.+=++..+..+.+...+......-+.. ++++.+++.++........+..+.++-. +.....+..
T Consensus 21 p~~~Rt~~~~~~~~~W~g~~~~i~~~~~~g~~l~~GLs~~~ai~ai~lG~~i~~~~~~l~g~~G~~~Gl--~~~v~sR~s 98 (484)
T PRK11375 21 TQSQRTWKTFNYFTLWMGSVHNVPNYVMVGGFFILGLSTFSIMLAIILSAFFIAAVMVLNGAAGSKYGV--PFAMILRAS 98 (484)
T ss_pred CccccCCcHHHHHHHHHHHhccHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHhcccccccCC--ChhHhHHHH
Confidence 3446788999988887777765444433333332212222 6667777776666666666666655532 477788889
Q ss_pred hchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHccCCCCCcceeccccc-cccCc-chhHHHHHHHHHHHHHhccch
Q 007943 146 LGDFVAYIAAGNIL-FEYVVSGASVARSWTSYFATLCNHDPGSFRIHVSSVA-EDYSH-LDPIAVIVSFFVCVGACLSMK 222 (584)
Q Consensus 146 ~g~~~g~~~g~~~~-l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~g~~ 222 (584)
||+..+.+.+.... +..+...+......++.++.++....+.+.....+.+ .+... ..+..+++.++.+.+...|.|
T Consensus 99 FG~~Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~~i~~~~~~~~~~~~~~g~~~~~~i~~~i~~~l~~~~~~~g~~ 178 (484)
T PRK11375 99 YGVRGALFPGLLRGGIAAIMWFGLQCYAGSLALLILIGKIWPGFLTLGGDFTLLGLSLPGLITFLIFWLVNVGIGFGGGK 178 (484)
T ss_pred HccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCcHHHHHHHHHHHHHHHHHHHcCHH
Confidence 99887777777663 4556666666666666665443221111110000000 00000 113334445556666778999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCCCC-------chhHHHHHHHHHHHhhc-hhhhhhhhcccccCCC
Q 007943 223 GSSRFNSVATIVHIVILIFILITGLTQANTANYAIFAPN-------GVRGILKASAVLFFAYV-GFDGVATLGEEVKNPG 294 (584)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-------g~~~~~~~~~~~~~~~~-G~e~~~~~a~E~k~p~ 294 (584)
...+++.+...+.++..+.+.+..+...+.+......+. ....+..++...+-++. +.-..+.++...|++
T Consensus 179 ~i~~l~~i~~p~~~i~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~vig~~~~~~~~~~D~tRy~k~~- 257 (484)
T PRK11375 179 VLNKFTAILNPCIYIVFGGMAIWAISLVGIGPIFDYIPSGIQKAENSGFLFLVVINAVVAVWAAPAVSASDFTQNAHSF- 257 (484)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhccCcccccCCcchHHHHHHHHHHHHHHHHHHHccccchhcccCCh-
Confidence 999999988888776666555544444332222111111 12234444433333333 334555666777776
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHH-HhccCCCCCCCCChHHHHHHHhCchHHHHHHHHHHHHHHHHHHH-HHHhhhHHH
Q 007943 295 RDIPIGLIGSMVITITVYCVLSATL-CLMQPYSQIDVDAPFTLAFQAVGMNWAKYIVALGALKGMTTVLL-ANVIGQARY 372 (584)
Q Consensus 295 r~~p~ai~~~~~~~~i~y~l~~~~~-~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~sR~ 372 (584)
|+.-++...+..+...+..+..... ......-.....+|. +++...+......+..+..+++..++.. ...++.+--
T Consensus 258 ~~~~~~~~~g~~i~~~~~~~~g~~~~~~a~~~~g~~~~dp~-~i~~~~~~~~~~~~a~l~~v~a~~~tN~~~N~ys~~~~ 336 (484)
T PRK11375 258 RAQALGQTLGLVVAYILFAVASVCIIAGASIHYGADTWNVL-DIVQRWDSLFASFFAVLVILMTTISTNATGNIIPAGYQ 336 (484)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHH-HHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccHHHH
Confidence 4444566655555444332222221 111111001123443 3444444455555555556666666644 355554433
Q ss_pred HHHHHhcCCCchhhhcccCccccchHHHHHHHHHHHHHHHh
Q 007943 373 FTHIGRTHMAPPFLAAINGKTGTPVNATVVMSLANSVVAFF 413 (584)
Q Consensus 373 l~~~ardg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~ 413 (584)
+ .+.+||.+ |.| ++.++.++++.++...
T Consensus 337 l-----~~l~pk~i---~~~-----~~~~i~~iig~~~~pw 364 (484)
T PRK11375 337 I-----AALAPTKL---TYK-----NGVLIASIISLLICPW 364 (484)
T ss_pred H-----HHhCcCcc---chh-----hHHHHHHHHHHHhccH
Confidence 3 44667543 322 3555666666555444
No 58
>PTZ00206 amino acid transporter; Provisional
Probab=99.21 E-value=6.6e-08 Score=102.68 Aligned_cols=246 Identities=14% Similarity=0.096 Sum_probs=154.3
Q ss_pred cCHHHHHHHHHHHhhhhhhHHccHHhHhhccCch-HHHHHHHHHHHHHHHHHHHHhhhhccccCCchhhhHHHHhchHHH
Q 007943 73 LNWWDLIWFGIGAVMGAGIFVLTGEAARNFAGPA-VIISYLISGISALLSVLCYTEFSVELPVAGGSFAYLRVELGDFVA 151 (584)
Q Consensus 73 l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ii~~l~~~~~~~~~~el~~~~P~~Gg~y~~~~~~~g~~~g 151 (584)
=|..+..+-.+.+++|+|++..|.... + +|.. .++..++.++++......+.+.+.+ ++.-.+.+-+++.+||..+
T Consensus 60 gg~~~s~fnL~~~~iGaGILsLP~Af~-~-~G~v~giillil~a~ls~ys~~lL~~~~~~-~~~~sY~~la~~~~G~~g~ 136 (467)
T PTZ00206 60 GGIAASAFNIASSTVGAGIVGLPSAAN-S-SGLVMAMIYLIIITAMTIFSIYALGVAADK-TNIRTYEGVARVLLGPWGS 136 (467)
T ss_pred CcHHHHHHHHHHHHHhHHHHHHHHHHH-H-hhHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHhCHHHH
Confidence 455677777788889999998877653 3 6654 5666667777777777777776665 3334566677888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCC-CcceeccccccccCcchhHHHHHHHHHHHHHhccchhHHHHHHH
Q 007943 152 YIAAGNILFEYVVSGASVARSWTSYFATLCNHDPG-SFRIHVSSVAEDYSHLDPIAVIVSFFVCVGACLSMKGSSRFNSV 230 (584)
Q Consensus 152 ~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 230 (584)
+++....++.....+.++....++.+...+..... .+. .....+ ......+.+.+.+-+...+.++..+++..+
T Consensus 137 ~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~---~~~~~~--r~~~~~i~~~i~lPLs~~r~i~~L~~~S~i 211 (467)
T PTZ00206 137 YYVAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFL---KQKSGN--RLLTSLMWLCFMLPLVIPRHIDSLRYVSTI 211 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchh---hhccCc--EEeeeehhhhHhhhcccccchHHHHHHHHH
Confidence 99999999999999999999999998887754211 110 000000 000111111112222233455555555444
Q ss_pred HHHHHHHHHHHHHHHhhcccccCCCCC----CCC-------CchhHHHHHHHHHHHhhchhhhhhhhcccccCC-CCCch
Q 007943 231 ATIVHIVILIFILITGLTQANTANYAI----FAP-------NGVRGILKASAVLFFAYVGFDGVATLGEEVKNP-GRDIP 298 (584)
Q Consensus 231 ~~~~~~~~~~~~~i~~~~~~~~~~~~~----~~~-------~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p-~r~~p 298 (584)
.....+...+.+++.......+++..+ ..+ +.....+.++...+|+|.+.......-+|+||| .|+..
T Consensus 212 ~~~~i~~~vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~M~~~t~~~~~ 291 (467)
T PTZ00206 212 AVSFMVYLVIVIVVHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDMTNRSVGKFV 291 (467)
T ss_pred HHHHHHHHHhhhhhhhhcccCcccccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHhhcccchhHHH
Confidence 332222222222222222221211110 000 011357788999999999999999999999986 36778
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 007943 299 IGLIGSMVITITVYCVLSATLCLMQPYS 326 (584)
Q Consensus 299 ~ai~~~~~~~~i~y~l~~~~~~~~~~~~ 326 (584)
+....+..++.++|.+..+.-....+++
T Consensus 292 ~v~~~s~~i~~~lY~~~G~~GYl~fG~~ 319 (467)
T PTZ00206 292 LASTIAMGMCFTMYVLTAFFGYMDFGRN 319 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccc
Confidence 8999999999999999988877766654
No 59
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=99.19 E-value=1.8e-07 Score=94.32 Aligned_cols=291 Identities=15% Similarity=0.219 Sum_probs=197.6
Q ss_pred ccccccCHHHHHHHHHHHhhhhhhHHccHHhHhhccCchHHHHHHHHHHHHHHHHHHHHhhhhccc-------cCCchhh
Q 007943 68 EMKKNLNWWDLIWFGIGAVMGAGIFVLTGEAARNFAGPAVIISYLISGISALLSVLCYTEFSVELP-------VAGGSFA 140 (584)
Q Consensus 68 ~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ii~~l~~~~~~~~~~el~~~~P-------~~Gg~y~ 140 (584)
+-+++++.+|.++.++++.+|+|=......++.. |||+++....+.+++...+.+.=+-|+..|. -.||..+
T Consensus 58 ~~~~~vS~FqAl~~sla~~VGtGNIaGVAtAI~~-GGPGAvFWMWi~Al~Gmat~f~E~~La~~Yr~kd~~G~~~GGP~y 136 (452)
T COG1115 58 AGKGGVSSFQALMTSLAARVGTGNIAGVATAIAL-GGPGAVFWMWIVALFGMATKFAESTLAQKYRVKDKDGEYRGGPAY 136 (452)
T ss_pred CCCCCcChHHHHHHHHHhccCcchHHHHHHHHHc-CCCccHHHHHHHHHHHHHHHHHHHHHHhheeEeCCCCCCcCChHH
Confidence 3467799999999999999999998888888876 9999555555555666666666666777665 2489999
Q ss_pred hHHHHhc-hHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHccCCCCCcceeccccccccCcchhHHHHHHHHHHHHHh
Q 007943 141 YLRVELG-DFVAYIAAGNILFEYV-VSGASVARSWTSYFATLCNHDPGSFRIHVSSVAEDYSHLDPIAVIVSFFVCVGAC 218 (584)
Q Consensus 141 ~~~~~~g-~~~g~~~g~~~~l~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (584)
|.++.+| |++|.+.+....+++- ......+...++.++..++.+ ....++++.++...+..
T Consensus 137 Yi~kGl~~r~l~v~FA~~li~afg~i~n~vQ~NsIa~a~~~af~~~-----------------~~~~gi~la~l~~~VI~ 199 (452)
T COG1115 137 YIEKGLGMRWLAVLFAFALIAAFGFIGNGVQSNSIASALANAFGIP-----------------PLVTGIVLALLVALVIF 199 (452)
T ss_pred HHHhhcCCcHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHhcCCc-----------------HHHHHHHHHHHHHHHHH
Confidence 9999999 6777777766677776 577888888888888877643 12677788888888888
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCC---------CCCCC----chh------HHHHHHHHHHHhh--
Q 007943 219 LSMKGSSRFNSVATIVHIVILIFILITGLTQANTANYA---------IFAPN----GVR------GILKASAVLFFAY-- 277 (584)
Q Consensus 219 ~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---------~~~~~----g~~------~~~~~~~~~~~~~-- 277 (584)
-|+|..+++......++-+.-++..+..+.. +.++.. .|.+. |+. .+..++.=..|+-
T Consensus 200 GGi~rIa~v~~~vVPfMA~~Yi~~~~~Ii~~-n~~~iP~~i~~If~sAF~~~aa~GG~~G~~v~~aI~~Gv~RGlfSNEA 278 (452)
T COG1115 200 GGIKRIAKVSSKVVPFMAILYVLVALVIIVL-NISQIPAVIALIFSSAFGPKAAAGGFAGYTVAQAIRNGVKRGLFSNEA 278 (452)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHhhhHHHHHHHHHhcCCchhhhhhhhhHHHHHHHHHHHHHHhhcccc
Confidence 9999999999988887766655544443331 111111 22222 221 1222333334544
Q ss_pred -chhhhhhhhcccccCCCCCchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCC--CCChHH-HHHHHhCchHHHHHHHHH
Q 007943 278 -VGFDGVATLGEEVKNPGRDIPIGLIGSMVITITVYCVLSATLCLMQPYSQID--VDAPFT-LAFQAVGMNWAKYIVALG 353 (584)
Q Consensus 278 -~G~e~~~~~a~E~k~p~r~~p~ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~--~~~p~~-~~~~~~g~~~~~~~~~~~ 353 (584)
.|....++.+.++++|.|+=-..+....+=+.++...+.+.+.....++... +...+. .+++..-+++...++.+.
T Consensus 279 GmGsap~aaAaA~~~hPv~QGlv~~~gvfiDT~iVCt~Ta~iIL~sg~~~~~~~~~G~~ltq~A~~~~~g~~G~~fv~i~ 358 (452)
T COG1115 279 GMGSAPIAAAAAKTDHPVKQGLVQMLGVFIDTLVVCTATAFIILLSGAWNSGGGLSGAALTQAAFSSHLGSWGSYFVAIA 358 (452)
T ss_pred cCCcchhHHHhhcCCCcHHHhHHHHhhhhhhhhHHhhHHHHHHHHcCCcccCCCCchHHHHHHHHHHhcCccHHHHHHHH
Confidence 2555666667788888776544444444435555666666655544433322 222333 455666667999999999
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHH
Q 007943 354 ALKGMTTVLLANVIGQARYFTHIG 377 (584)
Q Consensus 354 ~~~~~~~~~~~~~~~~sR~l~~~a 377 (584)
+.+-.+++.+++.+..-|-+.-+.
T Consensus 359 l~lFafTTIlg~yyyge~~~~fl~ 382 (452)
T COG1115 359 LFLFAFTTILGWYYYGEKNIEFLF 382 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999988888776654
No 60
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=99.10 E-value=4.9e-07 Score=87.27 Aligned_cols=266 Identities=16% Similarity=0.140 Sum_probs=170.5
Q ss_pred HHHHHHHhhhhhhHHccHHhHhhccCc---hHHHHHHHHHHHHHHHHHHHHhhhhccccCCchhhhHHHHhchHHHHHHH
Q 007943 79 IWFGIGAVMGAGIFVLTGEAARNFAGP---AVIISYLISGISALLSVLCYTEFSVELPVAGGSFAYLRVELGDFVAYIAA 155 (584)
Q Consensus 79 ~~~~~~~~ig~gi~~~~~~~~~~~~G~---~~~~~~ii~~l~~~~~~~~~~el~~~~P~~Gg~y~~~~~~~g~~~g~~~g 155 (584)
.+..++.++|+|.- +-..+. +.-|+ ..+++.++.+++....+....|+++++. +...-++.++.+||.++.+.-
T Consensus 9 ~f~~ig~~vGAGfA-sGqEi~-QFF~~~G~~s~~gIivs~vlf~~~g~vim~ig~~f~-a~~y~~~~~~v~~~~~~ki~d 85 (349)
T COG3949 9 AFAFIGTVVGAGFA-SGQEIM-QFFGKYGVYSILGIILSTVLFTLSGAVIMTIGKKFN-ATSYREILKYVSGPKFAKIID 85 (349)
T ss_pred HHHHHHHhhccccc-chHHHH-HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhc-ccchHHHHHHHhhHHHHHHHH
Confidence 34556678888842 333333 33444 3889999999999999999999999985 456889999999999998887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcceeccccccccCcchhHHHHHHHHHHHHHhcc-chhHHHHHHHHHHH
Q 007943 156 GNILFEYVVSGASVARSWTSYFATLCNHDPGSFRIHVSSVAEDYSHLDPIAVIVSFFVCVGACLS-MKGSSRFNSVATIV 234 (584)
Q Consensus 156 ~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~ 234 (584)
....+.....+.....+.++.+++.++.. .| +-+++++....+...++ ++..-+++.+...+
T Consensus 86 ~~iif~lf~~~vVM~AGags~~~e~~~lP--~w---------------iGali~i~~v~i~lfl~~vegi~tvn~iI~P~ 148 (349)
T COG3949 86 IIIIFFLFSTAVVMLAGAGSLLEEMFGLP--YW---------------IGALIIILLVLILLFLGRVEGIITVNGIITPF 148 (349)
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHhCcc--HH---------------HHHHHHHHHHHHHHHHhcccceeeeheeHHHH
Confidence 65555555554445555555788777642 11 23355555566666666 77777777777666
Q ss_pred HHHHHHHHHHHhhcccccCCCC--CCCCCchhHHHHHHHHHHHhhchhhhhhhhcccccCCCCCchhHHHHHHHHHHHHH
Q 007943 235 HIVILIFILITGLTQANTANYA--IFAPNGVRGILKASAVLFFAYVGFDGVATLGEEVKNPGRDIPIGLIGSMVITITVY 312 (584)
Q Consensus 235 ~~~~~~~~~i~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~r~~p~ai~~~~~~~~i~y 312 (584)
.++.+.............+..+ .-...+|..-..+ ....-..........+++|+|++ |+..++-..+-++.+++.
T Consensus 149 LIi~l~~v~~~~~f~~~~~~a~~~~~~~~~W~~~~~~-Y~alNi~~~~avLv~lg~~~~~~-~~~~~g~l~gglIlgvl~ 226 (349)
T COG3949 149 LIIILVLVTLSFQFTNLGNAAQIVLTKQGNWKASAVG-YGALNILVAVAVLVPLGGRMESR-KVSGIGGLIGGLILGVLL 226 (349)
T ss_pred HHHHHHHHHHHHHHhhccchhhhcCCcCCChHHHHHh-hhhHHHHhHhHhhhhhccccccc-chhhhhhhhhhHHHHHHH
Confidence 6555333222222211111111 1112233222211 11122223455566778999995 677788888888888888
Q ss_pred HHHHHHHHhccCCCCCCCCChHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHhh
Q 007943 313 CVLSATLCLMQPYSQIDVDAPFTLAFQAVGMNWAKYIVALGALKGMTTVLLANVIG 368 (584)
Q Consensus 313 ~l~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (584)
.+....+....| +-.+.+-|..++++..+ +....++.+.......++..+.+++
T Consensus 227 ~l~nlsLi~~~~-~v~~~dIP~l~i~~~~~-~~i~lvm~vIi~~~IytT~vg~iy~ 280 (349)
T COG3949 227 FLINLSLIALYD-KVVNYDIPLLTIAKNFS-PLIGLVMSVIIWLEIYTTTVGLIYG 280 (349)
T ss_pred HHHHHHHHhhcc-hhhccCCcHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888776555 33455779999999887 7777777777777777777766655
No 61
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=98.97 E-value=1.1e-05 Score=82.99 Aligned_cols=240 Identities=8% Similarity=0.056 Sum_probs=140.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccCCchhhhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCC
Q 007943 107 VIISYLISGISALLSVLCYTEFSVELPVAGGSFAYLRVELGDFVAYIAAGNILFEYVVSGASVARSWTSYFATLCNHDPG 186 (584)
Q Consensus 107 ~~~~~ii~~l~~~~~~~~~~el~~~~P~~Gg~y~~~~~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~ 186 (584)
.+++.+++-++-.......++++.+...+ ...-.+..||..-+.+.....++.++...+.+....++......+
T Consensus 54 si~aillG~llG~i~~A~~s~~Ga~~Glp--qmi~sR~~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~~~~---- 127 (442)
T COG1457 54 SLLAILLGNLLGGIFMAYFSYQGARTGLP--QMILSRYPFGVKGSILPSLLNGITLIGWFGVNVILSGIAIGSGTG---- 127 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccCCC--hheeecccccchhHHHHHHHHHHHHhhHHHHHHHHhccccccCCC----
Confidence 66777777777777777777777666544 455567789999999998888888888888888777766222111
Q ss_pred CcceeccccccccCcchhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHhhcccc-cCCCCCCCCCchhH
Q 007943 187 SFRIHVSSVAEDYSHLDPIAVIVSFFVCVGACLSMKGSSRFNSVATIVHIVILIFILITGLTQAN-TANYAIFAPNGVRG 265 (584)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~g~~~ 265 (584)
.+ .....++..++.++..++|.|...+++.+.........+......+-..+ .+....-.|..+.+
T Consensus 128 --------~~-----~~~~ili~g~l~~l~~ifG~r~l~~l~~~a~~~~~~lf~~l~~~~~~~~~~~~~~~~~~~~~~~~ 194 (442)
T COG1457 128 --------LP-----VWAGILIIGVLMTLVTIFGYRALHKLERIAVPLLLLLFLYLLALLFRSKGGLDALWVKGPTSPLS 194 (442)
T ss_pred --------Cc-----HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccceeeccCCCcchh
Confidence 01 11445555667778888999999999999999888887776666555222 22222222455556
Q ss_pred HHHHHHHHHHhhchh-hhhhhhcccccCCCCCchhHHHHHHHH----HHHHHHHHHHHHHhccCCCCCCCCChHHHHHHH
Q 007943 266 ILKASAVLFFAYVGF-DGVATLGEEVKNPGRDIPIGLIGSMVI----TITVYCVLSATLCLMQPYSQIDVDAPFTLAFQA 340 (584)
Q Consensus 266 ~~~~~~~~~~~~~G~-e~~~~~a~E~k~p~r~~p~ai~~~~~~----~~i~y~l~~~~~~~~~~~~~~~~~~p~~~~~~~ 340 (584)
+..++..++-.+..+ -.++.++.-.|+|+. .|+...+.+. ...++++...... ..+.++ +..+....
T Consensus 195 fl~a~slv~g~~~sw~~~~aDysRy~~~~t~--~~~~~~~~~G~~l~~~~~~ilGa~~a~-a~g~~~-----~~~~~~~~ 266 (442)
T COG1457 195 FLSALSLVIGSFASWGPYAADYSRYAPSPTP--SKAFLAAVLGFFLGTSFMMILGAALAA-AAGNAD-----SIADVMLG 266 (442)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhcCCCch--HHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCc-----hHHHHHHh
Confidence 676666655444433 344555555565541 2232222222 2223333333322 222222 34445555
Q ss_pred hCchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 007943 341 VGMNWAKYIVALGALKGMTTVLLANVIGQARYFTH 375 (584)
Q Consensus 341 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~ 375 (584)
.|+ +.....+.+.++..++....+|+++=-..+
T Consensus 267 ~G~--~g~~~~lil~l~~~ttN~~nlYsa~ls~~~ 299 (442)
T COG1457 267 LGG--FGLPAILILVLGTVTTNANNLYSAGLSFAN 299 (442)
T ss_pred ccc--HHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 553 444555556666666655555555444333
No 62
>PF13906 AA_permease_C: C-terminus of AA_permease
Probab=98.92 E-value=1.8e-09 Score=74.88 Aligned_cols=51 Identities=33% Similarity=0.738 Sum_probs=49.3
Q ss_pred cccccccHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhhcc
Q 007943 512 WGVPLLPWLPSACIAVNVFVMGSVDGQSFVRFMIWTFLLLVYYLFVALHAS 562 (584)
Q Consensus 512 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~~ 562 (584)
||+|+.|++|.++++.|++++.+++..+|+.+++|+++|++.|+.|++||+
T Consensus 1 F~vP~vP~~P~~si~~ni~Lm~~L~~~twirf~iWl~iGl~iYf~YG~~hS 51 (51)
T PF13906_consen 1 FKVPLVPFLPALSILINIYLMAQLSALTWIRFGIWLAIGLVIYFGYGIRHS 51 (51)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHheeeecC
Confidence 689999999999999999999999999999999999999999999999885
No 63
>PRK11017 codB cytosine permease; Provisional
Probab=98.85 E-value=7e-05 Score=78.22 Aligned_cols=216 Identities=8% Similarity=0.034 Sum_probs=119.6
Q ss_pred ccccCHHHHHHHHHHHhhhhhhHHccHHhHhhccCch-HHHHHHHHHHHHHHHHHHHHhhhhccccCCchhhhHHHHhch
Q 007943 70 KKNLNWWDLIWFGIGAVMGAGIFVLTGEAARNFAGPA-VIISYLISGISALLSVLCYTEFSVELPVAGGSFAYLRVELGD 148 (584)
Q Consensus 70 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ii~~l~~~~~~~~~~el~~~~P~~Gg~y~~~~~~~g~ 148 (584)
+|+ +.++.+.+-++..+....+...+.. ...-+.. ++++.+++.++........+-.+.++-. +.....|..||.
T Consensus 8 ~r~-~~~~~~~~~~g~~~~~~~~~~g~~l-~~GLs~~~ai~aiilG~~i~~~~~~l~~~~G~k~G~--~~~v~sR~~FG~ 83 (404)
T PRK11017 8 ARK-GVLSLTMVMLGFTFFSASMWAGGTL-GTGLSFVDFLLAVLIGNLLLGIYTAALGYIGAKTGL--STHLLARFSFGE 83 (404)
T ss_pred Hhc-chHhHHHHHHHHHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--CHHHHHHHHhch
Confidence 345 7777766655555433333222222 2212333 6777777776666655555555554422 366678889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcceeccccccccCcchhHHHHHHHHHHHHHhccchhHHHHH
Q 007943 149 FVAYIAAGNILFEYVVSGASVARSWTSYFATLCNHDPGSFRIHVSSVAEDYSHLDPIAVIVSFFVCVGACLSMKGSSRFN 228 (584)
Q Consensus 149 ~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 228 (584)
..+.+.+....+..+...+.+....+..++...+.+. ....+++.++.......|.|...+++
T Consensus 84 ~Gs~l~~~~~~i~~igW~av~~~~~~~~l~~~~~~~~-----------------~~~~~i~~~l~~~~~~~G~~~i~~~~ 146 (404)
T PRK11017 84 KGSWLPSLLLGFTQVGWFGVGVAMFAIPVVKATGLDI-----------------NLLIVLSGLLMTVTAYFGISALTILS 146 (404)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9888888887877777777777776666666543211 02233444555666678889999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcccc-cCCCCCCCCCchhHHHHHHHHHHHh-hchhhhhhhhcccccCCCCCchhHHHHHHH
Q 007943 229 SVATIVHIVILIFILITGLTQAN-TANYAIFAPNGVRGILKASAVLFFA-YVGFDGVATLGEEVKNPGRDIPIGLIGSMV 306 (584)
Q Consensus 229 ~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~-~~G~e~~~~~a~E~k~p~r~~p~ai~~~~~ 306 (584)
.+......+..+...+..+.+.+ .+......+.+...++.++...+-. .++.-..+.++...|++++. -.+...+..
T Consensus 147 ~~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~g~~~~~~~~~~DysRy~k~~~~~-~~~~~lg~~ 225 (404)
T PRK11017 147 RIAVPAIALLGGYSVWLAVNDVGGLDGLKAIVPAEPLDFSAALTLVVGSFISGGTLTADFVRFGRSAKIA-VLATMVAFF 225 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCchhhhhcCCCCCcccHHHHHHHHHHHHHHhHhcCCChHhhccCccce-eehhHHHHH
Confidence 88877766655544433333221 1111111122223344443332222 33445566677777776433 344444443
Q ss_pred H
Q 007943 307 I 307 (584)
Q Consensus 307 ~ 307 (584)
+
T Consensus 226 i 226 (404)
T PRK11017 226 L 226 (404)
T ss_pred H
Confidence 3
No 64
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=98.81 E-value=0.00013 Score=78.21 Aligned_cols=283 Identities=11% Similarity=0.067 Sum_probs=156.0
Q ss_pred ccccCHHHHHHHHHHHhhhhhhHHccHHhHhhccCch-HHHHH---HHHHHHHHHHHHHHHhhhhccccCCchhhhHHHH
Q 007943 70 KKNLNWWDLIWFGIGAVMGAGIFVLTGEAARNFAGPA-VIISY---LISGISALLSVLCYTEFSVELPVAGGSFAYLRVE 145 (584)
Q Consensus 70 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~---ii~~l~~~~~~~~~~el~~~~P~~Gg~y~~~~~~ 145 (584)
.|+++++...+...++.++++.+......... .|.. .+.+. ....+.....+.-+.++.++. +.-..++|.++.
T Consensus 40 gr~~~~~~~~~s~~at~~s~~t~ig~~g~~y~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~-~~~T~~e~l~~R 117 (483)
T PRK09442 40 NRSMGGFVLAMTLIATYISASSFIGGPGAAYK-YGLGWVLLAMIQVPTVWLSLGILGKKFAILARKY-NAVTLNDMLRAR 117 (483)
T ss_pred CCCccHHHHHHHHHHHHhhHhHHhCChhHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCccHHHHHHHH
Confidence 58899888887777877776666555444433 4443 22211 111111222333445555554 445689999999
Q ss_pred hchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcceeccccccccCcchhHHHHHHHHHHHHHhccchhH
Q 007943 146 LGDF-VAYIAAGNILFEYVVSGASVARSWTSYFATLCNHDPGSFRIHVSSVAEDYSHLDPIAVIVSFFVCVGACLSMKGS 224 (584)
Q Consensus 146 ~g~~-~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 224 (584)
+|+. .....+....+..+...+....+.+..++..++.+.. ..+.+..++.......-|.|..
T Consensus 118 yg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~gi~~~----------------~~iii~~~iv~iYt~~GGl~av 181 (483)
T PRK09442 118 YQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETATGISYE----------------TGLLIFGITVALYTAFGGFRAV 181 (483)
T ss_pred hCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH----------------HHHHHHHHHHHHHHHhccHHHH
Confidence 9954 5666666666666667778888888888887753210 0222223333455556788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccc-------------ccCCCCCCCCCchh--HHHHHH-HHHHHhhchhhhhhhhcc
Q 007943 225 SRFNSVATIVHIVILIFILITGLTQA-------------NTANYAIFAPNGVR--GILKAS-AVLFFAYVGFDGVATLGE 288 (584)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~i~~~~~~-------------~~~~~~~~~~~g~~--~~~~~~-~~~~~~~~G~e~~~~~a~ 288 (584)
.+...+-.++.++..+++.+..+... +++.+.+..+.++. ...... ....+...+.....+-.=
T Consensus 182 ~~TD~iQ~~i~~~~~~vi~~~~~~~~gG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~~qR~~ 261 (483)
T PRK09442 182 VLTDALQGIVMLVGTVILLIGVIHAGGGLENAVQTLQAIDPQLVTPQGADDILSPPFMTSFWILVCFGVIGLPHTAVRCM 261 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhcCccccCCCCCCccccHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 88777777666665544443322211 11111122222211 111111 111222223333333333
Q ss_pred cccCCCCCchhHHHHHHHHHHHHHHHHHHHH-H--hccCCCCCCCCChHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH
Q 007943 289 EVKNPGRDIPIGLIGSMVITITVYCVLSATL-C--LMQPYSQIDVDAPFTLAFQAVGMNWAKYIVALGALKGMTTVLLAN 365 (584)
Q Consensus 289 E~k~p~r~~p~ai~~~~~~~~i~y~l~~~~~-~--~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 365 (584)
..||+ |+..|+..++......+++...+.- . ...|. ..+++..+.....+..++++..++.++.+.+.+++..+.
T Consensus 262 aaks~-~~a~~~~~~~~~~~~~~~~~~~~~G~~~~~~~p~-~~~~~~~~p~l~~~~lp~~l~gl~~a~~~aA~mST~~s~ 339 (483)
T PRK09442 262 SYKDS-KALHRGIIIGTIVVGFLMFGMHLAGALGRAVLPD-LTVPDKVIPTLMLKVLPPFAAGIFLAAPMAAIMSTVDSQ 339 (483)
T ss_pred HcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCccchHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 46775 6778888888766665555433331 1 12232 223455666677777778888888888888888887777
Q ss_pred HhhhHHH
Q 007943 366 VIGQARY 372 (584)
Q Consensus 366 ~~~~sR~ 372 (584)
+.+.+=.
T Consensus 340 l~~~ss~ 346 (483)
T PRK09442 340 LLQSSST 346 (483)
T ss_pred HHHHHHH
Confidence 7666553
No 65
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=98.77 E-value=1.3e-09 Score=114.56 Aligned_cols=354 Identities=13% Similarity=0.120 Sum_probs=202.7
Q ss_pred cccCHHHHHHHHHHHhhhhhhHHccHHhHhhccCch-HHHHHHHHHHHHHHHHHHHHhhhhccc---cCCchhhhHHHHh
Q 007943 71 KNLNWWDLIWFGIGAVMGAGIFVLTGEAARNFAGPA-VIISYLISGISALLSVLCYTEFSVELP---VAGGSFAYLRVEL 146 (584)
Q Consensus 71 r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ii~~l~~~~~~~~~~el~~~~P---~~Gg~y~~~~~~~ 146 (584)
|+-|.++..+..++.++|+|++..|-.... +|.. .++..++.++++......+.|.....| +.....+-+++.+
T Consensus 1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af~~--~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~~~~~~~~y~~l~~~~~ 78 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIGAGILSLPYAFAQ--SGWVLGIILLVLVALLSYYTMYLLVRAANAMPNGTGRRSYGDLARRAF 78 (409)
T ss_pred CCccHHHHHHHHHHHHHhHHHHHHHHHHHH--hhhhhhhHHHHHHHHHHHHhhhhhhccccccccccccccccccccccc
Confidence 467889999999999999999988876643 6655 777788888888889999999988775 3333444457899
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcceeccccccccCcchhHHHHHHHHHHHHHhccchhHHH
Q 007943 147 GDFVAYIAAGNILFEYVVSGASVARSWTSYFATLCNHDPGSFRIHVSSVAEDYSHLDPIAVIVSFFVCVGACLSMKGSSR 226 (584)
Q Consensus 147 g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 226 (584)
||..++++.....+........+....++.+....+...... ..+ ...+.++...+..-+.. .|..+.
T Consensus 79 G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~-------~~~---~~~~~~i~~~i~~pls~--~~~l~~ 146 (409)
T PF01490_consen 79 GPKGKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFGDL-------FIS---RYVWIIIFALIVLPLSF--LKNLKS 146 (409)
T ss_pred cccccccccchheeccccccceeEEEeeeeeecccccccccc-------ccc---ccccccccccccccccc--cchhhH
Confidence 999999988888887777777777777777776665421110 000 00111121222222221 233333
Q ss_pred HHHHHHHHHHHHHH--HHHHHhhc-c--cccCCCCC---CCCCchhHHHHHHHHHHHhhchhhhhhhhcccccCCCC--C
Q 007943 227 FNSVATIVHIVILI--FILITGLT-Q--ANTANYAI---FAPNGVRGILKASAVLFFAYVGFDGVATLGEEVKNPGR--D 296 (584)
Q Consensus 227 ~~~~~~~~~~~~~~--~~~i~~~~-~--~~~~~~~~---~~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~r--~ 296 (584)
+........+..+. .+.+.... . .+..+... ..+..+.++..++....|+|.+......+.+|+|+|+| +
T Consensus 147 l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~~~~~~ 226 (409)
T PF01490_consen 147 LRYLSILGLFSIFYFIVIVVIYIISYGPGEPSGVPSPPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDPSKFKK 226 (409)
T ss_pred HHHHhhhhhhccceeeeeecceeeeeecccccccccccccccchhhHHHHhhhhhhhhhhcccccceeeeeccCCccccc
Confidence 32222222211111 11111111 1 11111111 12234568899999999999999999999999999865 4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHhCch-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 007943 297 IPIGLIGSMVITITVYCVLSATLCLMQPYSQIDVDAPFTLAFQAVGMN-WAKYIVALGALKGMTTVLLANVIGQARYFTH 375 (584)
Q Consensus 297 ~p~ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~ 375 (584)
+.|+...+...+.++|.+..+......+++..+ .+...+... +...+..+...+....+..-..+...+.+..
T Consensus 227 ~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~------~il~n~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~ 300 (409)
T PF01490_consen 227 MKKVLSISMIICFIIYLLFGIFGYLAFGDSVQG------NILLNLPNDDVLIIIARILLVISLLLSYPLQLFPARNSLEN 300 (409)
T ss_pred cceeeeehhhhhhHHhhhhhhcccceeeeeecc------hhhhcCCCcccccccccccchhhhhhccccccchhHhhhhh
Confidence 559999999999999999988876666543211 222333222 3444444444445544444444444445444
Q ss_pred HHhcC-----CCchhhhcccCccccchHHHHHHHHHHHHHHHhhcHHHHHHHHHHH--HHHHHHHHHHHHHhhhhhcC
Q 007943 376 IGRTH-----MAPPFLAAINGKTGTPVNATVVMSLANSVVAFFTSLDVLANLLSIS--TLFIFSLVALALLVRRYYVA 446 (584)
Q Consensus 376 ~ardg-----~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~i~~r~~~~ 446 (584)
.-++. ..++.- +.++..+.-.+. .+......+-....+++.+.++.+.. ..+.|+++++.+++.+++++
T Consensus 301 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~iA~~vp~~~~i~~l~Ga~~~~~i~fi~P~l~~~~~~~~~~ 376 (409)
T PF01490_consen 301 LLFKRAASSRDSPKNT-PSSRWLRYLIRI-ILVLLSFLIAIFVPNFGDIISLVGALFGSFISFILPALLYLKLFKRKR 376 (409)
T ss_pred heeccccccccccccc-cccceeeeeeec-chhhhhhhhhhhccchhhhhcccchHHHHhHHHHHHHHHHHHhhcccc
Confidence 43321 111000 000001111111 11111111223335778888777643 45788888888777766654
No 66
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=98.73 E-value=0.00015 Score=74.71 Aligned_cols=362 Identities=12% Similarity=0.097 Sum_probs=190.1
Q ss_pred cccccccCHHHHHHHHHHHhhhhhhHHccHHhHhhccCch-HHHHHHHHHHHHHHHHHHHHhhhhccccCCchhhhHHHH
Q 007943 67 HEMKKNLNWWDLIWFGIGAVMGAGIFVLTGEAARNFAGPA-VIISYLISGISALLSVLCYTEFSVELPVAGGSFAYLRVE 145 (584)
Q Consensus 67 ~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ii~~l~~~~~~~~~~el~~~~P~~Gg~y~~~~~~ 145 (584)
++.+|+.++++.+.+=.+.+.-.+-+...+.......++. .+++.+++-++....+..-+..++++--+ +-.-.+..
T Consensus 35 ~~~~rtWg~~~~~~~W~~~~~nv~~~~~aa~~~~lGLS~~qallai~vG~~iv~i~m~Lng~~G~~~gIp--Fpv~~RaS 112 (497)
T COG1953 35 PAEQRTWGWWNYFALWLGMVHNVPTYMLAAGLFELGLSPWQALLAILVGNLIVAIFMVLNGHAGSKYGIP--FPVLSRAS 112 (497)
T ss_pred ccccCcchHHHHHHHHHHhhccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhccCcccccCCC--chHHHHHH
Confidence 4557899999999888888766665656555555534455 88888888888887777777776665332 45566778
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcceecc--ccccccCcchhHHHHHHHHH-HHHHhccch
Q 007943 146 LGDFVAYIAAGNILFEYVVSGASVARSWTSYFATLCNHDPGSFRIHVS--SVAEDYSHLDPIAVIVSFFV-CVGACLSMK 222 (584)
Q Consensus 146 ~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~ 222 (584)
||-..+-.-...-.+.-++.-...+...+..++.++....+.+....+ .....+ ....++.++.+.+ ..+...|.+
T Consensus 113 FGi~Ga~~p~l~R~i~A~~WyGvqty~Gg~av~llL~~i~~~~~~~~~~~~~lg~t-t~~~i~F~ifW~l~~l~~~~g~~ 191 (497)
T COG1953 113 FGIYGANFPALIRAIVAIVWYGVQTYAGGLAVNLLLGSIFPSLLIPNTLSPLLGLT-TLELICFFIFWVLQLLVLFKGME 191 (497)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhccccccCCccccccCCc-HHHHHHHHHHHHHHHHHHhcCHH
Confidence 887766666666666666666677777777666655432222211100 001111 1223444444443 444457999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCCC----Cc---hhHHHHHHHHHH-HhhchhhhhhhhcccccCCC
Q 007943 223 GSSRFNSVATIVHIVILIFILITGLTQANTANYAIFAP----NG---VRGILKASAVLF-FAYVGFDGVATLGEEVKNPG 294 (584)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~----~g---~~~~~~~~~~~~-~~~~G~e~~~~~a~E~k~p~ 294 (584)
..+|++.+...+..+..+.+.+-...+.+..+.....| .+ +..++.++.... +-=+..-.....+.+.|+|
T Consensus 192 ~Ir~~~~~a~p~~~~~~~gl~Iw~~~~a~g~~~~~~~p~~~~~~~~~~w~~~~~~~~~v~~~Atl~lN~~DFsRfa~s~- 270 (497)
T COG1953 192 SIRKFETWAGPLVYIAMLGLAIWALVKAGGSSILGELPAGTVSGSNSSWAFLAGIAAWVGFWATLALNIPDFTRFAKSQ- 270 (497)
T ss_pred HHHHHHHHhchHHHHHHHHHHHHHHHhcCCcCccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHhcCCchhhcccCCh-
Confidence 99999999999999988888888777655432221111 11 222333221111 1112334445556666665
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCC---CCChHHHHHHHhCchHHHH-HHHHHHHHHHHHHHHHHHhhhH
Q 007943 295 RDIPIGLIGSMVITITVYCVLSATLCLMQPYSQID---VDAPFTLAFQAVGMNWAKY-IVALGALKGMTTVLLANVIGQA 370 (584)
Q Consensus 295 r~~p~ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~---~~~p~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~s 370 (584)
|+.-++-.+++.+...+.-+..+..... .+.+. .-+| .++..+........ +..+...++..++..+.-..++
T Consensus 271 ~~~~~gq~~gLPv~~~l~~ligvv~tsa--~~~lyG~~~w~P-~di~~~~~~~~~~~fl~~l~~~iati~~Ni~aN~vsp 347 (497)
T COG1953 271 KAQIWGQLVGLPVNFALFSLIGVVVTSA--SYILYGETIWDP-LDIVARFLSGFYAAFLAGLTFAVATISTNIAANIVSP 347 (497)
T ss_pred hhhhhccchhhhHHHHHHHHHHhhHHHH--HHHhhCcccCCH-HHHHHHhccchHHHHHHHHHHHHHHHhhhHHhccCCh
Confidence 3444555555555554444443333221 11111 1133 44555555444444 5555555555544433211111
Q ss_pred HHHHHHHhcCCCchhhhcccCccccchHHHHHHHHHHHHHHHh---hcHHH-HHHHHHHHHHH--HHHHHHHHHHhhhhh
Q 007943 371 RYFTHIGRTHMAPPFLAAINGKTGTPVNATVVMSLANSVVAFF---TSLDV-LANLLSISTLF--IFSLVALALLVRRYY 444 (584)
Q Consensus 371 R~l~~~ardg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~---~~~~~-l~~~~~~~~~~--~~~~~~~~~i~~r~~ 444 (584)
-. =-.+.+||.... | ++-+++.+++.++.=. .+-+. ..-+.+.+..+ ...+.+.-+++.||+
T Consensus 348 ~~----D~s~l~Pk~in~---k-----rg~liaA~ial~~~PW~l~~s~s~f~~~L~~yg~~LgpiaGVmiaDyflirk~ 415 (497)
T COG1953 348 GY----DLSALFPKYINI---K-----RGGLIAAIIALLICPWNLLESSSSFTTFLGSYGVFLGPIAGVMIADYFLVRKG 415 (497)
T ss_pred HH----HHHHhcccccch---h-----hhHHHHHHHHHHHcChHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 11 112456665552 2 3455566655543322 11111 11222222222 234455566667766
Q ss_pred cCC
Q 007943 445 VAG 447 (584)
Q Consensus 445 ~~~ 447 (584)
+.+
T Consensus 416 ~~~ 418 (497)
T COG1953 416 RLN 418 (497)
T ss_pred ccC
Confidence 654
No 67
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=98.67 E-value=0.00014 Score=77.10 Aligned_cols=241 Identities=10% Similarity=0.053 Sum_probs=127.3
Q ss_pred cccccccCHHHHHHHHHHHhhhhhhHHccHHhHhhccCch-HHHHHHHHHHHHHHHHHHHHhhhhccccCCchhhhHHHH
Q 007943 67 HEMKKNLNWWDLIWFGIGAVMGAGIFVLTGEAARNFAGPA-VIISYLISGISALLSVLCYTEFSVELPVAGGSFAYLRVE 145 (584)
Q Consensus 67 ~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ii~~l~~~~~~~~~~el~~~~P~~Gg~y~~~~~~ 145 (584)
++-+|+.++++.+.+=++..+...-+..-+......-+.. ++++.+++.++........+..+.++-. ......|..
T Consensus 8 p~~~R~~~~~~~~~~W~~~~~~v~~~~~Ga~l~~~GLs~~~ailai~lG~~i~~~~~~l~~~~G~r~Gl--~~~v~sR~~ 85 (442)
T TIGR00800 8 KEEERTWSFLNYFSLWLGAAFNIATWAIGALGLPLGLSWWQSVIAIILGNLLGGIFVALNSRAGAKYGL--PFPVLSRAS 85 (442)
T ss_pred CcccCCccHHHHHHHHHHHhhhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHhCC--Ccchhhhhh
Confidence 3445777899988888777765443433222222111222 6777777777666666666666665533 367778899
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcceeccccccccCcchhHHHHHHHHHHH--HHhccchh
Q 007943 146 LGDFVAYIAAGNILFEYVVSGASVARSWTSYFATLCNHDPGSFRIHVSSVAEDYSHLDPIAVIVSFFVCV--GACLSMKG 223 (584)
Q Consensus 146 ~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~ 223 (584)
||+.-+.+.+...++..+...+.++...++.++..++...+.+.. .+.+......+..++...+.. ....|.|.
T Consensus 86 FG~~Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i~~~~~~----~~~~~t~~~~~~~~i~~~l~~~~~~~~g~~~ 161 (442)
T TIGR00800 86 FGIYGSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSIFPGYLH----LGNGMTTLELICFIIFWALVLVFLFFFGYKI 161 (442)
T ss_pred hhhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccccc----cCCcccHHHHHHHHHHHHHHHHHHHcCHHHH
Confidence 999999999998889988889999888887776665432111100 000000011233233222222 34456565
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccc-cCCCC-C----CCCCchhHHHHHHHHHHH-hhchhhhhhhhcccccCCCCC
Q 007943 224 SSRFNSVATIVHIVILIFILITGLTQAN-TANYA-I----FAPNGVRGILKASAVLFF-AYVGFDGVATLGEEVKNPGRD 296 (584)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~-~----~~~~g~~~~~~~~~~~~~-~~~G~e~~~~~a~E~k~p~r~ 296 (584)
..+.+.......++.++.++.. +.+.+ ..+.. . ..+.+...++.++..++- ..++...++.++...|+++ +
T Consensus 162 ~~~~~~~a~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~~s~~~~~~DysRy~~~~~-~ 239 (442)
T TIGR00800 162 RHLFEWLAVVPPFAAFGMLIWA-LSKAHGKGPLGELTGTLHGSTGAWAFLYALSLVIGSFATWATNAPDFTRFGKSKK-T 239 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHcCCCCccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHcCchhhhhhcCCcc-c
Confidence 5555555544444443333322 22221 11111 1 112233445554444332 2334456677777778764 4
Q ss_pred chhHHHHHHHHHHHHHHHH
Q 007943 297 IPIGLIGSMVITITVYCVL 315 (584)
Q Consensus 297 ~p~ai~~~~~~~~i~y~l~ 315 (584)
..++...+.....+...+.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~ 258 (442)
T TIGR00800 240 AIWGQFLALPGGFTLTCFF 258 (442)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 4555665555544443333
No 68
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=98.64 E-value=0.0014 Score=70.43 Aligned_cols=283 Identities=14% Similarity=0.086 Sum_probs=142.0
Q ss_pred ccccCHHHHHHHHHHHhhhhhhHH-ccHHhHhhccCchHHHHHHHHHHH-HHHHHHHHHhhhhcc----ccCCchhhhHH
Q 007943 70 KKNLNWWDLIWFGIGAVMGAGIFV-LTGEAARNFAGPAVIISYLISGIS-ALLSVLCYTEFSVEL----PVAGGSFAYLR 143 (584)
Q Consensus 70 ~r~l~~~~~~~~~~~~~ig~gi~~-~~~~~~~~~~G~~~~~~~ii~~l~-~~~~~~~~~el~~~~----P~~Gg~y~~~~ 143 (584)
.|+++++...+-..++.+++..+. .++.... .|....+.. .+..+ .+...+.+++.-+++ ++.-..++|.+
T Consensus 35 gr~~~~~~~~~s~~At~~s~~~~~G~~g~~y~--~G~~~~~~~-~g~~~~~~~~~~~~~~~~r~~~~~~~~~~T~~e~l~ 111 (487)
T TIGR02121 35 GRSLGPFVTALSAGASDMSGWLLMGLPGALYV--TGLSELWIA-IGLTIGAYINWKFVAPRLRVYTEAAHNSITLPDFFE 111 (487)
T ss_pred CCcccHHHHHHHHHHHHHhHHHHHhhHHHHHH--hhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHhhcCCccHHHHHH
Confidence 588998887666656666554444 3444433 454322221 12222 222333444433322 23345799999
Q ss_pred HHhch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcceeccccccccCcchhHHHHHHHHHHHHHhcc
Q 007943 144 VELGD---FVAYIAAGNILFEYVVSGASVARSWTSYFATLCNHDPGSFRIHVSSVAEDYSHLDPIAVIVSFFVCVGACLS 220 (584)
Q Consensus 144 ~~~g~---~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 220 (584)
+.+|+ ....+.+....+......+....+.+..++..++.+. ...+.+..++.+.....-|
T Consensus 112 ~Ryg~~~~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~~gi~~----------------~~~iii~~~i~~~Yt~~GG 175 (487)
T TIGR02121 112 NRFNDKSRLLRIISALIILVFFTIYTSSGLVAGGKLFESTFGLDY----------------KTGLLIGALIIVIYTFFGG 175 (487)
T ss_pred HHhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccH----------------HHHHHHHHHHHHHHHHhhh
Confidence 99994 4555555555555566667777777777777765321 0122233344455556678
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhccc-------------ccCCCCCCCCCchhHHHHHHHHHHHhhchhhhhhhhc
Q 007943 221 MKGSSRFNSVATIVHIVILIFILITGLTQA-------------NTANYAIFAPNGVRGILKASAVLFFAYVGFDGVATLG 287 (584)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-------------~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~a 287 (584)
.|...+...+-.++.+...+++.+..+.+. +++.++.+.+..+..+...+.. ...+.|.....+-.
T Consensus 176 l~av~~TD~iQ~~i~~~~~~~v~~~~~~~~GG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~p~~~qR~ 254 (487)
T TIGR02121 176 FLAVSWTDFVQGLLMFFALVLVPIVALFNLGGFGETLSAVAAINPHLLDMFKGASVIAIISLLAW-GLGYFGQPHIIVRF 254 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhCccccCCCCCCCHHHHHHHHHH-HHHhccchHHHHHH
Confidence 888887776666666555443333322211 1111111112222222221111 11122222222222
Q ss_pred ccccCCCCCchhHHHHHHHHHHHHHHHHHH----HHHh--ccCCCC-CCCCChHHHHHHHhCchHHHHHHHHHHHHHHHH
Q 007943 288 EEVKNPGRDIPIGLIGSMVITITVYCVLSA----TLCL--MQPYSQ-IDVDAPFTLAFQAVGMNWAKYIVALGALKGMTT 360 (584)
Q Consensus 288 ~E~k~p~r~~p~ai~~~~~~~~i~y~l~~~----~~~~--~~~~~~-~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~ 360 (584)
--.||+ |+..|+...+........+...+ .... ..|... .+++..+....+...++++..++....+.+.++
T Consensus 255 ~aaks~-k~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~p~~~~~~~d~~~~~~~~~~~p~~l~gl~~a~ilaA~mS 333 (487)
T TIGR02121 255 MAIRSH-KELPKARRIGMSWMILSLLGAIAVGLTGIAYFNKNPHVELVDRETIFIVLSQILFHPWIAGILLAAILAAIMS 333 (487)
T ss_pred HhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccCCCcchhHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 224554 56777777665433222221111 1111 111111 133455666666667788888888888888888
Q ss_pred HHHHHHhhhHHHH
Q 007943 361 VLLANVIGQARYF 373 (584)
Q Consensus 361 ~~~~~~~~~sR~l 373 (584)
+..+.+.+.|-.+
T Consensus 334 T~~s~l~s~ss~~ 346 (487)
T TIGR02121 334 TISSQLLVSSSAL 346 (487)
T ss_pred HHHHHHHHHHHHH
Confidence 8888887776553
No 69
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=98.60 E-value=0.0012 Score=68.64 Aligned_cols=246 Identities=12% Similarity=0.073 Sum_probs=140.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhccccCCchhhhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC
Q 007943 106 AVIISYLISGISALLSVLCYTEFSVELPVAGGSFAYLRVELGDFVAYIAAGNILFEYVVSGASVARSWTSYFATLCNHDP 185 (584)
Q Consensus 106 ~~~~~~ii~~l~~~~~~~~~~el~~~~P~~Gg~y~~~~~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~ 185 (584)
.++++.+++.++........+..+.++.. ......|..||+..+.+......+..+...+.++...++.++...+...
T Consensus 30 ~ai~aiilG~~i~~~~~~l~~~~G~~~Gl--~~~v~sR~~FG~~Gs~~~~~l~~i~~igW~~v~~~~gg~~l~~~~~~~~ 107 (386)
T TIGR02358 30 RGLLAILLGHLVGVLLLSAAGVIGADTGL--SAMGSLKLSLGSKGSVLPSLLNLLQLVGWTAVMIIVGAKAASLLGGRLF 107 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccCc--CHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 36777777777766666666666665533 3777889999999999999999999999999999999998888765321
Q ss_pred CCcceeccccccccCcchhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCCCCchhH
Q 007943 186 GSFRIHVSSVAEDYSHLDPIAVIVSFFVCVGACLSMKGSSRFNSVATIVHIVILIFILITGLTQANTANYAIFAPNGVRG 265 (584)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~ 265 (584)
+.. + .....+++.++.......|.|...+++.+...+..+..+...+....+.+..... .+.+..+
T Consensus 108 ~~~---------~---~~~~~~i~~~l~~~~~~~G~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~~~s 173 (386)
T TIGR02358 108 GEE---------S---PMLWILIVGILVTLWLLSGPLAFVWLNNWSVWLLLIATLWLLVVVFSKADLSELW--NRAGDMS 173 (386)
T ss_pred CCC---------c---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhc--CCCCCcc
Confidence 110 0 0122233333456666789999999999988887777666555444443322111 1111122
Q ss_pred HHHHHHHHHHh-hchhhhhhhhcccccCCCCCchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHhCch
Q 007943 266 ILKASAVLFFA-YVGFDGVATLGEEVKNPGRDIPIGLIGSMVITITVYCVLSATLCLMQPYSQIDVDAPFTLAFQAVGMN 344 (584)
Q Consensus 266 ~~~~~~~~~~~-~~G~e~~~~~a~E~k~p~r~~p~ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~ 344 (584)
+..+.....-. -.+....+.++...|+|++ .-++...+..+...+..+.........+. .+|. +.....+..
T Consensus 174 ~~~~~~~~~~~~~swa~~~~DysRy~k~~~~-~~~~~~~G~~i~~~~~~~~G~~~~~a~~~-----~d~~-~~~~~~g~~ 246 (386)
T TIGR02358 174 FAVAVELVIAMPLSWLPLIADYTRFARNPRH-VFLGTVLGYFIGSCWMYFLGLAVTLATGQ-----TDII-SILAGAGLG 246 (386)
T ss_pred HHHHHHHHHHHHHHHHHHccchhhhcCCCcc-eehHHHHHHHHHHHHHHHHHHHHHHhcCC-----CCHH-HHHHhccHH
Confidence 33332222211 1222335666667777644 44666666666555555444444333332 2343 333333322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 007943 345 WAKYIVALGALKGMTTVLLANVIGQARYFTHIG 377 (584)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a 377 (584)
.+..+..+++..++.....++.+=-+.++.
T Consensus 247 ---~~~~~~~~l~~~~~n~~N~ys~~l~l~~l~ 276 (386)
T TIGR02358 247 ---IPALLIILLSTVTTTFMDIYSAAISTGNLL 276 (386)
T ss_pred ---HHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 223334455555555555555555555443
No 70
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=98.57 E-value=0.0021 Score=68.85 Aligned_cols=284 Identities=10% Similarity=0.027 Sum_probs=155.2
Q ss_pred ccccCHHHHHHHHHHHhhhhhhHHccHHhHhhccCchH-HHHH---HHHHHHHHHHHHHHHhhhhccccCCchhhhHHHH
Q 007943 70 KKNLNWWDLIWFGIGAVMGAGIFVLTGEAARNFAGPAV-IISY---LISGISALLSVLCYTEFSVELPVAGGSFAYLRVE 145 (584)
Q Consensus 70 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~-~~~~---ii~~l~~~~~~~~~~el~~~~P~~Gg~y~~~~~~ 145 (584)
.|+++++...+..+++.++.+.+......... .|... .+.+ ..+.+.....+.-+.++.++. +.-..++|.++.
T Consensus 39 gr~l~~~~~~~s~~at~~s~~t~~g~~g~~y~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~T~~e~l~~R 116 (471)
T TIGR02119 39 GRSMGGFVLAMTLVATYGSASSFIGGPGIAYN-YGLGWVLLAMIQVPTGYFVLGVLGKKFAIISRKY-NAITINDVLKAR 116 (471)
T ss_pred CCcccHHHHHHHHHHHHhhHHHHcCcHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCccHHHHHHHH
Confidence 58899999988888888887666654444333 44331 1111 111111111233344444443 445789999999
Q ss_pred hch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcceeccccccccCcchhHHHHHHHHHHHHHhccchhH
Q 007943 146 LGD-FVAYIAAGNILFEYVVSGASVARSWTSYFATLCNHDPGSFRIHVSSVAEDYSHLDPIAVIVSFFVCVGACLSMKGS 224 (584)
Q Consensus 146 ~g~-~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 224 (584)
+|+ ......+....+...........+.+..++..++.+. + ..+.+..++.......-|.|..
T Consensus 117 yg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~gi~~--~--------------~~iii~~~iv~iYt~~GG~~av 180 (471)
T TIGR02119 117 YNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLTGLSY--L--------------TALFIFSSSVLIYTTFGGFRAV 180 (471)
T ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH--H--------------HHHHHHHHHHHHHHHhhhHHHH
Confidence 994 4566666666666666666777777777877765321 0 0222222334455556788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccc-cc------------CCCCCCCCCch--hHHHHHH-HHHHHhhchhhhhhhhcc
Q 007943 225 SRFNSVATIVHIVILIFILITGLTQA-NT------------ANYAIFAPNGV--RGILKAS-AVLFFAYVGFDGVATLGE 288 (584)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~i~~~~~~-~~------------~~~~~~~~~g~--~~~~~~~-~~~~~~~~G~e~~~~~a~ 288 (584)
.+.+.+-..+.++..+++.+..+... +. +...++.+.++ ..+.... ....+...+.+...+-.-
T Consensus 181 ~~td~iQ~~v~~~~~~~~~~~~l~~~gG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~~~R~~ 260 (471)
T TIGR02119 181 ALTDAIQGIVMFTGTTILLIAVIKAGGGVEKIMEKLKDIDPNLITPFGGDGGLTKPFVASFWILVGIGVIGLPQTAVRCM 260 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhcCccccCCCCCCcchhhhHHHHHHHHHHHHHhCchHHHHHHH
Confidence 88877777666665554444333321 11 11112222221 1111111 111122223333333445
Q ss_pred cccCCCCCchhHHHHHHHHHHHHHHHHHHHH-Hh-ccCCCCCCCCChHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH
Q 007943 289 EVKNPGRDIPIGLIGSMVITITVYCVLSATL-CL-MQPYSQIDVDAPFTLAFQAVGMNWAKYIVALGALKGMTTVLLANV 366 (584)
Q Consensus 289 E~k~p~r~~p~ai~~~~~~~~i~y~l~~~~~-~~-~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 366 (584)
..||+ |+..|+...+.+....+++...+.- .. ...++..+++..+.....+..++++..++...++.+.+++..+.+
T Consensus 261 aak~~-~~a~~~~~~~~~~~~~~~~~~~~~G~~a~~~~p~~~~~d~~~p~~~~~~lp~~~~gl~~a~llaA~mST~~s~l 339 (471)
T TIGR02119 261 SYKDS-KAMHRAMIIGTIVVGIIMLGMHLAGVLGRAVIPDLTVPDKVIPLLAIKVLPPILAGIFLAAPMAAIMSTVNSLL 339 (471)
T ss_pred hcCCH-HHHhhhHhHHHHHHHHHHHHHHHHHHhhhhhccCCCCccchHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56774 7788888888766655554443331 11 112222234566666666666788888888888888888887777
Q ss_pred hhhHHH
Q 007943 367 IGQARY 372 (584)
Q Consensus 367 ~~~sR~ 372 (584)
.+.+-.
T Consensus 340 ~~~ss~ 345 (471)
T TIGR02119 340 LQSSST 345 (471)
T ss_pred HHHHHH
Confidence 766655
No 71
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=98.56 E-value=0.00023 Score=74.70 Aligned_cols=285 Identities=11% Similarity=0.041 Sum_probs=160.0
Q ss_pred ccccCHHHHHHHHHHHhhhhhhHHccHHhHhhccCchHHHHHHHHHHHHHHHHHHHHhhhhccccCCchhhhHHHHhch-
Q 007943 70 KKNLNWWDLIWFGIGAVMGAGIFVLTGEAARNFAGPAVIISYLISGISALLSVLCYTEFSVELPVAGGSFAYLRVELGD- 148 (584)
Q Consensus 70 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ii~~l~~~~~~~~~~el~~~~P~~Gg~y~~~~~~~g~- 148 (584)
.|+++++...+...++.++.+.+......... .|...++..+...+.....+..+.+.-++.+ .-..++|.++.+|+
T Consensus 2 gr~~~~~~~~~s~~at~~s~~t~ig~~~~~y~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~T~~e~l~~Ryg~~ 79 (407)
T TIGR00813 2 GRSLGGWVVAASLFASYISASQFLGLPGAIYA-YGFAIGFYELGALVLLIILGWLFVPIFINNG-AYTMPEYLEKRFGKR 79 (407)
T ss_pred CCCCCcHHHHHHHHHHHhhHHHHhcCcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCchhHHHHHHhCch
Confidence 47899998888888888876655554444444 4533332222223334445666666655544 45689999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcceeccccccccCcchhHHHHHHHHHHHHHhccchhHHHHH
Q 007943 149 FVAYIAAGNILFEYVVSGASVARSWTSYFATLCNHDPGSFRIHVSSVAEDYSHLDPIAVIVSFFVCVGACLSMKGSSRFN 228 (584)
Q Consensus 149 ~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 228 (584)
....+.+....+..+...+....+.+..++..++.+. ...+.+..++.......-|.|...+..
T Consensus 80 ~~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~gi~~----------------~~~~ii~~~i~~~Yt~~GG~~av~~Td 143 (407)
T TIGR00813 80 ILRGLSVLSLILYIFLYMSVDLFSGALLIELITGLDL----------------YLSLLLLGAITILYTVFGGLKAVVWTD 143 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchH----------------HHHHHHHHHHHHHHHHHcchHHHHHHH
Confidence 5667777877888888888888998888888775421 012223333344555667888888877
Q ss_pred HHHHHHHHHHHHHHHHHhhcccc-------------c------CCCC-CCCCCc-hhHH---HHHHHHHHHhhchhhhhh
Q 007943 229 SVATIVHIVILIFILITGLTQAN-------------T------ANYA-IFAPNG-VRGI---LKASAVLFFAYVGFDGVA 284 (584)
Q Consensus 229 ~~~~~~~~~~~~~~~i~~~~~~~-------------~------~~~~-~~~~~g-~~~~---~~~~~~~~~~~~G~e~~~ 284 (584)
.+-.++.++..+++.+..+.+.+ + +.+. ...+.. ...+ ..+.......+..-....
T Consensus 144 ~iQ~~i~~~~~i~~~~~~~~~~GG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 223 (407)
T TIGR00813 144 TIQAVIMILGTFILPVFAFSEVGGLGTFVEKASQAAPTNPSPDDLYDFFRDPSTSDLPWGAGVFGLPHVALWYWTNQVIV 223 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcCCCccchhhhccCCCCCcccCCChHHHHhChHHHHHHHhcCHHHh
Confidence 77766665554444433332211 1 0000 000100 0011 111111111110111112
Q ss_pred hhcccccCCCCCchhHHHHHHHHHHHHHHHHHHH-HH--hccC----CCC----CCCCChHHHHHHHhCchHHHHHHHHH
Q 007943 285 TLGEEVKNPGRDIPIGLIGSMVITITVYCVLSAT-LC--LMQP----YSQ----IDVDAPFTLAFQAVGMNWAKYIVALG 353 (584)
Q Consensus 285 ~~a~E~k~p~r~~p~ai~~~~~~~~i~y~l~~~~-~~--~~~~----~~~----~~~~~p~~~~~~~~g~~~~~~~~~~~ 353 (584)
+-.=-.|| +|+..|+...+.....+++++..+. +. ...+ ..+ .+.+..+....++..++++..++.+.
T Consensus 224 qR~~a~ks-~~~~r~~~~~~~~~~~~~~~~~~l~G~~a~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~lp~~l~gl~~ag 302 (407)
T TIGR00813 224 QRCLAAKS-AKHAKKGCLISGVLKLLPMFGAVLPGLIARALYTDIDPALAGAVNQNSDQAYPLLVQELMPPGLAGLFLAA 302 (407)
T ss_pred hHHHhcCC-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhhhcccCCChhhHHHHHHHHHcCcchHHHHHHH
Confidence 22223455 3778888888876666655443322 11 1122 111 13455667777777778888888888
Q ss_pred HHHHHHHHHHHHHhhhHHHH
Q 007943 354 ALKGMTTVLLANVIGQARYF 373 (584)
Q Consensus 354 ~~~~~~~~~~~~~~~~sR~l 373 (584)
.+.+.+++..+.+.+.+-.+
T Consensus 303 ilaA~mST~~s~l~a~ss~~ 322 (407)
T TIGR00813 303 ILAAVMSTLSSQLNSASTVF 322 (407)
T ss_pred HHHHHHHhhhhhHHHHHHHH
Confidence 88888888887777776654
No 72
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=98.41 E-value=5.7e-05 Score=79.34 Aligned_cols=291 Identities=16% Similarity=0.128 Sum_probs=141.4
Q ss_pred ccccCHHHHHHHHHHHhhhhhhHHccHHhHhhccCchHHHHHHHHHHHHHHHHHHHHhhhhccccCCchhhhHHHHhchH
Q 007943 70 KKNLNWWDLIWFGIGAVMGAGIFVLTGEAARNFAGPAVIISYLISGISALLSVLCYTEFSVELPVAGGSFAYLRVELGDF 149 (584)
Q Consensus 70 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ii~~l~~~~~~~~~~el~~~~P~~Gg~y~~~~~~~g~~ 149 (584)
.|+++++...+...++.++.+.+......... .|....+..+...+.....++.++.--++ .+.-...+|.++.+|+.
T Consensus 5 gr~~~~~~~~~s~~at~~s~~t~~G~~g~~y~-~G~~~~~~~~~~~~~~~~~~~~~~~~~r~-~~~~T~~e~~~~Ryg~~ 82 (406)
T PF00474_consen 5 GRSLGWWVVAFSLVATWISAWTFIGFPGFAYS-YGISGLWYAIGYAIGFLLFALFFAPRLRR-SGAVTIPEYLEKRYGSK 82 (406)
T ss_dssp -S---HHHHHHHHHHHHSSHHHHTHHHHHHHH-T-GGGGHHHHHHHHHHHHHHHHTHHHHHH-TT--SHHHHHHHHT-HH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCcceeeeccccchhHHHHHHHHHHhhcc-cchhhhhhhhhhhcCCc
Confidence 47899998888777877876555544333333 45543332333333333444444443332 34457899999999988
Q ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcceeccccccccCcchhHHHHHHHHHHHHHhccchhHHHH
Q 007943 150 V--AYIAAGNILFEYVVSGASVARSWTSYFATLCNHDPGSFRIHVSSVAEDYSHLDPIAVIVSFFVCVGACLSMKGSSRF 227 (584)
Q Consensus 150 ~--g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 227 (584)
. ..+......+......+....+.+..++..++.+. ...+.+...+.......-|.|...+.
T Consensus 83 ~~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~gi~~----------------~~~~~i~~~i~~iYt~~GGl~av~~t 146 (406)
T PF00474_consen 83 ALLRILAAIIIIVFMIPYLAAQLVGGGALLSVLFGIPY----------------NTAILIVGVIVIIYTFFGGLRAVAWT 146 (406)
T ss_dssp H-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--H----------------HHHHHHHHHHHHHTTCTT------SH
T ss_pred hhhhhhcccccchhhhhhhhccccccccchhhccchhh----------------hHHHHHHHHHHHHhhhhhhHhhhhHH
Confidence 8 66666666677777888888888888888876421 01222223333334445688887776
Q ss_pred HHHHHHHHHHHHHHHHHHhhccc-------------ccCCCCCCCCCch---hHHHHH--H-HHHHHhhchhhhhhhhcc
Q 007943 228 NSVATIVHIVILIFILITGLTQA-------------NTANYAIFAPNGV---RGILKA--S-AVLFFAYVGFDGVATLGE 288 (584)
Q Consensus 228 ~~~~~~~~~~~~~~~~i~~~~~~-------------~~~~~~~~~~~g~---~~~~~~--~-~~~~~~~~G~e~~~~~a~ 288 (584)
..+-.++.++..+++.+..+.+. +++....+.|.+. .+.... . ....+...+.....+-.-
T Consensus 147 d~iQ~~i~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~~qR~~ 226 (406)
T PF00474_consen 147 DFIQGVIMIIGAIVVLIFVLSAVGGFGGLFQNLSAAHPNFLDLFNPGGFSMFSSPLFFLSFWIALMLGTFGAPHFWQRFL 226 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-GGGG-SS--SS-----SSGGGGS-TTHHHHSTHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhccchhcCCchhhHHHHhhcCcccccccCCCCcccccchhhhHHHHHHHHhhhccchHHHHHHH
Confidence 66666655555444443333210 1111111222221 000100 0 011112222222222222
Q ss_pred cccCCCCCchhHHHHHHHHHHHHHHHH------HHHHHhccC----CCCCCCCChHHHHHHHhCchHHHHHHHHHHHHHH
Q 007943 289 EVKNPGRDIPIGLIGSMVITITVYCVL------SATLCLMQP----YSQIDVDAPFTLAFQAVGMNWAKYIVALGALKGM 358 (584)
Q Consensus 289 E~k~p~r~~p~ai~~~~~~~~i~y~l~------~~~~~~~~~----~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~ 358 (584)
-.||+ |+..|+...+.....+++... ........| ++..+.+..+........++++..++.+.++.+.
T Consensus 227 aak~~-~~ar~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~gl~~~~~~aA~ 305 (406)
T PF00474_consen 227 AAKSP-KTARKGMLIAIIFLIIFYFLTIFIGLIAIALFGLYPDAAGPSLGDPDLAFPYLAAQYLPPGLAGLFLAGILAAI 305 (406)
T ss_dssp SSSHH-HHHHHHHHHHHGGGTTHHHHHHHHHHHH-HHHHHH-TT--S-SSSGGGHHHHHHT-TS-TTHHHHHHHHHHHHH
T ss_pred hcCCH-HHHHHHHhHHhhhheeeehHHhhhhhhhhcccccccccccccccCCcccchhhhhhhccchhHHHHHHHHHHhh
Confidence 23554 567788777765444444331 111222222 1222334567777777777888888888888888
Q ss_pred HHHHHHHHhhhHHHHHHHHhcCCC
Q 007943 359 TTVLLANVIGQARYFTHIGRTHMA 382 (584)
Q Consensus 359 ~~~~~~~~~~~sR~l~~~ardg~l 382 (584)
.++..+.+.+.+-.+ +||=.-
T Consensus 306 ~ST~~s~l~a~ss~~---~~Di~~ 326 (406)
T PF00474_consen 306 MSTADSLLLAISSIF---SRDIYK 326 (406)
T ss_dssp HHHHHHHHHHHHHHH---HHHCCC
T ss_pred hHHHHHHHhhhhhhh---hHHhhh
Confidence 888888887777654 466433
No 73
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=98.40 E-value=0.0058 Score=65.89 Aligned_cols=283 Identities=12% Similarity=-0.006 Sum_probs=139.2
Q ss_pred ccccCHHHHHHHHHHHhhhhhhHHccHHhHhhccCchHHHHHHHHHHHH-HHHHHHHH-hh---hhccccCCchhhhHHH
Q 007943 70 KKNLNWWDLIWFGIGAVMGAGIFVLTGEAARNFAGPAVIISYLISGISA-LLSVLCYT-EF---SVELPVAGGSFAYLRV 144 (584)
Q Consensus 70 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ii~~l~~-~~~~~~~~-el---~~~~P~~Gg~y~~~~~ 144 (584)
.|++++|...+-..++.+++..+......... .|....+. .++..+. +.....++ .+ ..+.++.-..++|.++
T Consensus 39 gr~l~~~~~~~s~~At~~Sa~t~iG~~g~~y~-~G~~~~~~-~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~T~~e~l~~ 116 (502)
T PRK15419 39 GRSLGPFVTALSAGASDMSGWLLMGLPGAVFL-SGISESWI-AIGLTLGAWINWKLVAGRLRVHTEYNNNALTLPDYFTG 116 (502)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHhhHHHHH-cCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCceeHHHHHHH
Confidence 58899999887777777776655543333333 55543222 1222221 11111111 11 1122344568899999
Q ss_pred Hhch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcceeccccccccCcchhHHHHHHHHHHHHHhccc
Q 007943 145 ELGD---FVAYIAAGNILFEYVVSGASVARSWTSYFATLCNHDPGSFRIHVSSVAEDYSHLDPIAVIVSFFVCVGACLSM 221 (584)
Q Consensus 145 ~~g~---~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 221 (584)
.+|+ ....+.+....+......+....+.+..++..++.+. ...+.+..++.......-|.
T Consensus 117 Ry~~~~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~~gi~~----------------~~~iii~~~iv~iYt~~GGl 180 (502)
T PRK15419 117 RFEDKSRILRIISALVILLFFTIYCASGIVAGARLFESTFGMSY----------------ETALWAGAAATILYTFIGGF 180 (502)
T ss_pred HhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH----------------HHHHHHHHHHHHHHHHhhhH
Confidence 9984 4555666666666666667777777777877765321 01222333444555556788
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcc-cc------------cCCCCCCCCCchhHHHHHHHHHHHhhchhhhhhhhcc
Q 007943 222 KGSSRFNSVATIVHIVILIFILITGLTQ-AN------------TANYAIFAPNGVRGILKASAVLFFAYVGFDGVATLGE 288 (584)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~------------~~~~~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~ 288 (584)
|...+...+-.++.+...+++.+..+.. ++ +++.....+.++..+. +.......+.|.....+-.-
T Consensus 181 ~aV~~TD~iQ~~imi~g~i~~~~~~~~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~p~~~qR~~ 259 (502)
T PRK15419 181 LAVSWTDTVQASLMIFALILTPVIVIISVGGFGDSLEVIKQKSIENVDMLKGLNFVAII-SLMGWGLGYFGQPHILARFM 259 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcCccccCcccCCCHHHHH-HHHHHHHHHcCChHHHHhhe
Confidence 8888877776666655544333332221 11 1111111111222222 11111222233322222222
Q ss_pred cccCCCCCchhHHHH----HHHHHHHHHHHHHHHHHh--ccCCC----CCCCCChHHHHHHHhCchHHHHHHHHHHHHHH
Q 007943 289 EVKNPGRDIPIGLIG----SMVITITVYCVLSATLCL--MQPYS----QIDVDAPFTLAFQAVGMNWAKYIVALGALKGM 358 (584)
Q Consensus 289 E~k~p~r~~p~ai~~----~~~~~~i~y~l~~~~~~~--~~~~~----~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~ 358 (584)
-.||+ |++.++... .........++....... ..|.. +.+++..+.........+++.-++...++.+.
T Consensus 260 aak~~-~~~~~a~~~~~~~~~~~~~~~~~ig~~~~~~~~~~p~~~~~~~~~~d~~~~~l~~~~lp~~l~gl~~a~ilAA~ 338 (502)
T PRK15419 260 AADSH-HSIVHARRISMTWMILCLAGAVAVGFFGIAYFNEHPAVAGAVNQNAERVFIELAQILFNPWIAGILLSAILAAV 338 (502)
T ss_pred ecCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCCCcchHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 23443 223333222 211111111111111111 11211 11234556666666777888888888888888
Q ss_pred HHHHHHHHhhhHHH
Q 007943 359 TTVLLANVIGQARY 372 (584)
Q Consensus 359 ~~~~~~~~~~~sR~ 372 (584)
+++..+.+.+.|-.
T Consensus 339 mST~~s~l~a~ss~ 352 (502)
T PRK15419 339 MSTLSCQLLVCSSA 352 (502)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888777754
No 74
>PRK12488 acetate permease; Provisional
Probab=98.40 E-value=0.0064 Score=66.25 Aligned_cols=157 Identities=11% Similarity=-0.015 Sum_probs=95.7
Q ss_pred ccccCHHHHHHHHHHHhhhhhhHHccHHhHhhccCchHHHHHHHHHHHHHH-HHHHHHhhhhccccCCchhhhHHHHhc-
Q 007943 70 KKNLNWWDLIWFGIGAVMGAGIFVLTGEAARNFAGPAVIISYLISGISALL-SVLCYTEFSVELPVAGGSFAYLRVELG- 147 (584)
Q Consensus 70 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ii~~l~~~~-~~~~~~el~~~~P~~Gg~y~~~~~~~g- 147 (584)
.|++++|...+...+..+++..|......... .|...++ +.++..+... ..+.+++--++... -..++|.++.||
T Consensus 66 GR~l~~~~~~~si~at~~Sa~sflG~~G~~y~-~G~~~~~-~~~g~~~g~~~~~~~~a~~lr~~g~-~T~~d~l~~Rf~s 142 (549)
T PRK12488 66 GGGLTGMQNGLAIAGDMISAASFLGISAMMFM-NGYDGLL-YALGVLAGWPIILFLIAERLRNLGK-YTFADVVSYRLAQ 142 (549)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChhHHH-HHHHHHHHHHHHHHHHHHHHHHCCC-cchHHHHHHHcCC
Confidence 58899999988777877776666544433333 4544322 2233332222 23344444444332 368888888888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcceeccccccccCcchhHHHHHHHHHHHHHhccchhHHHH
Q 007943 148 DFVAYIAAGNILFEYVVSGASVARSWTSYFATLCNHDPGSFRIHVSSVAEDYSHLDPIAVIVSFFVCVGACLSMKGSSRF 227 (584)
Q Consensus 148 ~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 227 (584)
|....+.+....+..+........+.+..++.+++.+.. ..+.+..++.......-|.|...+.
T Consensus 143 ~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~gi~~~----------------~~iii~~~i~~~Yt~~GGm~av~~t 206 (549)
T PRK12488 143 GPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLFGISYL----------------YAVVIVGALMVLYVTFGGMLATTWV 206 (549)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH----------------HHHHHHHHHHHHHHhccchhHHHHH
Confidence 668888888777777777888888888888877653210 0222222334444456788988888
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 007943 228 NSVATIVHIVILIFILIT 245 (584)
Q Consensus 228 ~~~~~~~~~~~~~~~~i~ 245 (584)
+.+-.++.+...+++.+.
T Consensus 207 d~iQ~~im~~~~i~~~~~ 224 (549)
T PRK12488 207 QIIKAVLLLSGTSFMAFM 224 (549)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777776666655444333
No 75
>PRK09395 actP acetate permease; Provisional
Probab=98.37 E-value=0.0073 Score=65.90 Aligned_cols=155 Identities=10% Similarity=-0.009 Sum_probs=90.5
Q ss_pred ccccCHHHHHHHHHHHhhhhhhHHccHHhHhhccCchHHHHHHHHHHHHHH-HHHHHHhhhhccccCCchhhhHHHHhc-
Q 007943 70 KKNLNWWDLIWFGIGAVMGAGIFVLTGEAARNFAGPAVIISYLISGISALL-SVLCYTEFSVELPVAGGSFAYLRVELG- 147 (584)
Q Consensus 70 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ii~~l~~~~-~~~~~~el~~~~P~~Gg~y~~~~~~~g- 147 (584)
.|++++|...+...++.+++..|......... .|...++ +.++..+... ..+.+++--++.. .-..++|.++.||
T Consensus 68 gr~l~~~~~~~si~At~~Sa~tfiG~~g~~y~-~G~~~~~-~~~~~~~g~~~~~~~~~~~~r~~g-~~T~~d~l~~Rygs 144 (551)
T PRK09395 68 GGGITGFQNGLAIAGDYMSAASFLGISALVFT-SGYDGLI-YSIGFLVGWPIILFLIAERLRNLG-KYTFADVASYRLKQ 144 (551)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHH-hCHHHHH-HHHHHHHHHHHHHHHHHHHHhhCC-CccHHHHHHHHcCC
Confidence 58899988777667777766555544433333 4554322 2222322222 2333333323222 2357777888998
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcceeccccccccCcchhHHHHHHHHHHHHHhccchhHHHH
Q 007943 148 DFVAYIAAGNILFEYVVSGASVARSWTSYFATLCNHDPGSFRIHVSSVAEDYSHLDPIAVIVSFFVCVGACLSMKGSSRF 227 (584)
Q Consensus 148 ~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 227 (584)
|....+.+....+..+........+.+..++..++.+. ...+.+..++.......-|.|...+.
T Consensus 145 ~~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~gi~~----------------~~~ili~~~i~~iYt~~GGm~av~~T 208 (551)
T PRK09395 145 GPIRTLSACGSLVVVALYLIAQMVGAGKLIQLLFGLNY----------------HVAVVLVGVLMMVYVLFGGMLATTWV 208 (551)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH----------------HHHHHHHHHHHHHHHhhcchHHHHHH
Confidence 56888888877777777777777777777777765321 11223333344455556788888887
Q ss_pred HHHHHHHHHHHHHHHH
Q 007943 228 NSVATIVHIVILIFIL 243 (584)
Q Consensus 228 ~~~~~~~~~~~~~~~~ 243 (584)
+.+-.++.++..+++.
T Consensus 209 D~iQ~iim~~g~ii~~ 224 (551)
T PRK09395 209 QIIKAVLLLSGATFMA 224 (551)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7776666666544443
No 76
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=98.25 E-value=0.013 Score=64.11 Aligned_cols=149 Identities=13% Similarity=0.017 Sum_probs=91.8
Q ss_pred ccccCHHHHHHHHHHHhhhhhhHHccHHhHhhccCchH---HHHHHHHHHHHHHHHHHHHhhhhccccCCchhhhHHHHh
Q 007943 70 KKNLNWWDLIWFGIGAVMGAGIFVLTGEAARNFAGPAV---IISYLISGISALLSVLCYTEFSVELPVAGGSFAYLRVEL 146 (584)
Q Consensus 70 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~---~~~~ii~~l~~~~~~~~~~el~~~~P~~Gg~y~~~~~~~ 146 (584)
.|++++|.......++.+++..+......... .|... .+++.++ ....++.+++.-++... -..++|.++.|
T Consensus 31 Gr~l~~~~~~~s~~At~~Sa~tflG~~g~~y~-~G~~~~~~~~g~~~~---~~~~~~~~~p~~rr~~~-~T~~e~l~~Rf 105 (552)
T TIGR03648 31 GRGVPPVANGMATAADWMSAASFISMAGLIAF-LGYDGLAYLMGWTGG---YVLLALLLAPYLRKFGK-YTVPDFIGDRY 105 (552)
T ss_pred CCCCchHHHHHHHHHHHHhHHHHHHHHHHHHH-hChHHHHHHHHHHHH---HHHHHHHHHHHHHHCCC-ccHHHHHHHHh
Confidence 58899999887777777766555544333333 45432 2223222 22344666666666643 37999999999
Q ss_pred c-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcceeccccccccCcchhHHHHHHHHHHHHHhccchhHH
Q 007943 147 G-DFVAYIAAGNILFEYVVSGASVARSWTSYFATLCNHDPGSFRIHVSSVAEDYSHLDPIAVIVSFFVCVGACLSMKGSS 225 (584)
Q Consensus 147 g-~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 225 (584)
| |....+.+....+..+...+......+..++.+++.+.. ..+.+..++.......-|.|...
T Consensus 106 ~s~~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~gi~~~----------------~~iii~~~i~~iYt~~GG~~aV~ 169 (552)
T TIGR03648 106 YSNTARLVAVICAIFISFTYVAGQMRGVGVVFSRFLEVDFE----------------TGVFIGMAIVFFYAVLGGMKGVT 169 (552)
T ss_pred CCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH----------------HHHHHHHHHHHHHHHhhhHHHHH
Confidence 8 556778777777777777777778888888877764210 02222223334444556888887
Q ss_pred HHHHHHHHHHHHHH
Q 007943 226 RFNSVATIVHIVIL 239 (584)
Q Consensus 226 ~~~~~~~~~~~~~~ 239 (584)
+...+-.++.++..
T Consensus 170 ~TD~iQ~iim~ig~ 183 (552)
T TIGR03648 170 WTQVAQYIVLIVAY 183 (552)
T ss_pred HHHHHHHHHHHHHH
Confidence 77666665555443
No 77
>PRK10484 putative transporter; Provisional
Probab=98.23 E-value=0.014 Score=63.30 Aligned_cols=293 Identities=11% Similarity=0.008 Sum_probs=142.1
Q ss_pred ccccCHHHHHHHHHHHhhhhhhHHccHHhHhhccCchHHHHHHHHHHHHHHHHHHHHhhhhccccCCchhhhHHHHhchH
Q 007943 70 KKNLNWWDLIWFGIGAVMGAGIFVLTGEAARNFAGPAVIISYLISGISALLSVLCYTEFSVELPVAGGSFAYLRVELGDF 149 (584)
Q Consensus 70 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ii~~l~~~~~~~~~~el~~~~P~~Gg~y~~~~~~~g~~ 149 (584)
.|++++|-..+-..++.++++.+......... .|...........+.....++.++.--++. +.-..++|.++.+|+.
T Consensus 37 gR~l~~~~~~~sl~AT~~Sa~tflG~~g~~y~-~G~~~~~~~~~~~~~~~~~~~~~~p~~~r~-~~~T~~e~l~~Ryg~~ 114 (523)
T PRK10484 37 GRSLTGPVIAGSLLLTNLSTEQLVGLNGQAYA-SGMSVMAWEVTAAIALIILALIFLPRYLKS-GITTIPDFLEERYDKT 114 (523)
T ss_pred CCCCchHHHHHHHHHHHhhHHHHhcchHHHHH-hCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCccHHHHHHHhcCch
Confidence 58899998877777777776656544433333 454432111122222333444444333332 2346889999999987
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHccCCCCCcceeccccccccCcchhHHH--HHHHHHHHHHhccchhHHH
Q 007943 150 VAYIAAGNILFEYVVS-GASVARSWTSYFATLCNHDPGSFRIHVSSVAEDYSHLDPIAV--IVSFFVCVGACLSMKGSSR 226 (584)
Q Consensus 150 ~g~~~g~~~~l~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~ 226 (584)
.....+....+.+... .+......+..++..+.... .. +++... ...+.+ +.++.......-|.|...+
T Consensus 115 ~~~~~~~~~~i~~~~~~~~~~l~~g~~~l~~i~~~~~-~~-----gi~~~~--~~~~~~~~~~~i~~~Yt~~GGl~aV~~ 186 (523)
T PRK10484 115 TRRIVSILFLIGYVVSFLPIVLYSGALALNSLFHVSE-LL-----GISYGA--AIWLLVWLIGIIGAIYAVFGGLKAVAV 186 (523)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh-hc-----CCcHHH--HHHHHHHHHHHHHhhhhhhhhHHHHHH
Confidence 7666666655555443 33333333334443322110 00 000000 001111 1122344445568888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccc---------------ccCCCCCCCC----CchhHHHHHHHHH-HHhhchhhhhhhh
Q 007943 227 FNSVATIVHIVILIFILITGLTQA---------------NTANYAIFAP----NGVRGILKASAVL-FFAYVGFDGVATL 286 (584)
Q Consensus 227 ~~~~~~~~~~~~~~~~~i~~~~~~---------------~~~~~~~~~~----~g~~~~~~~~~~~-~~~~~G~e~~~~~ 286 (584)
...+-.++.++..+++.+..+... +++.++.+.+ ..+..++.+.... ++.+.+-....+-
T Consensus 187 TD~iQ~vim~i~~iiv~~~~l~~~g~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~qR 266 (523)
T PRK10484 187 SDTINGIGLLIGGLLVPVFGLIALGDGSFMQGLEQLTTVHPEKLNSIGGATDPVPFPTLFTGLILVNLFYWCTNQSIVQR 266 (523)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCccHHhHHHHHhhcCchhhcccCCCCCCCcHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 777666665555433332222110 1111111111 1222233332222 1112122222222
Q ss_pred cccccCCCCCchhHHHHHHHHHHHHHHHHHH---HHHhccCCCCCCCCChHHHHHHHhCchHHHHHHHHHHHHHHHHHHH
Q 007943 287 GEEVKNPGRDIPIGLIGSMVITITVYCVLSA---TLCLMQPYSQIDVDAPFTLAFQAVGMNWAKYIVALGALKGMTTVLL 363 (584)
Q Consensus 287 a~E~k~p~r~~p~ai~~~~~~~~i~y~l~~~---~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 363 (584)
.=-.||+ |+..|+...+.....+.++...+ ......|.+..+++..+.....+..++++.-++....+.+.+++..
T Consensus 267 ~~aak~~-k~a~~~~~~~~~~~~~~~~~~~~~G~~a~~~~p~~~~~~d~~~p~~~~~~lp~~l~Gl~~a~ilAA~mST~~ 345 (523)
T PRK10484 267 ALGAKNL-AEGQKGALLAAFFKLLGPLILVLPGIIAFHLYGDGLPNADMAYPTLVNDVLPVPLVGFFAAVLFGAILSTFN 345 (523)
T ss_pred HHhCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCChhhHHHHHHHHHcchhHHHHHHHHHHHHHHHHHH
Confidence 2334664 66778877776554444333221 1222233322244566777777777788887877777888888887
Q ss_pred HHHhhhHHHH
Q 007943 364 ANVIGQARYF 373 (584)
Q Consensus 364 ~~~~~~sR~l 373 (584)
+.+.+.|-.+
T Consensus 346 s~l~s~st~~ 355 (523)
T PRK10484 346 GFLNSASTLF 355 (523)
T ss_pred HHHHHHHHHH
Confidence 7777776553
No 78
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=98.22 E-value=0.0053 Score=62.85 Aligned_cols=289 Identities=12% Similarity=0.041 Sum_probs=142.7
Q ss_pred cCHHHH-HHHHHHHhhhhhhHHccHHhHhhccCchHHHHHHHHHHHHHHHHHHHHhhhhccc-cCCchhhhHHHHhchHH
Q 007943 73 LNWWDL-IWFGIGAVMGAGIFVLTGEAARNFAGPAVIISYLISGISALLSVLCYTEFSVELP-VAGGSFAYLRVELGDFV 150 (584)
Q Consensus 73 l~~~~~-~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ii~~l~~~~~~~~~~el~~~~P-~~Gg~y~~~~~~~g~~~ 150 (584)
.+.+-. +.-+.|+.+|.|-....+..+...||..-++-|++..++ .-.-..+.|++--.- +.+..-.|-+ ..++..
T Consensus 8 w~SrlGFILAa~GsAVGLGNiWrFPy~~~~nGGgAFll~yli~~l~-~GiPlli~Ef~iGr~~~~~~~~a~~~-l~~~~~ 85 (439)
T COG0733 8 WSSRLGFILAAAGSAVGLGNIWRFPYMAGENGGGAFLLPYLIFLLL-VGIPLLLAEFAIGRRGRKNAVGAFRK-LAPKKK 85 (439)
T ss_pred hhhHHHHHHHHHHHHhcccccccCCeEeeecCcchHHHHHHHHHHH-HhHHHHHHHHHhhhhcCCChhHHHHH-hccCcc
Confidence 444444 444567778988777777776665666644444444332 333344556543222 2222222222 221222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------ccCCCCCcceeccccccccCcchhHHHHHHHHHHHHHhccchh
Q 007943 151 AYIAAGNILFEYVVSGASVARSWTSYFATL-------CNHDPGSFRIHVSSVAEDYSHLDPIAVIVSFFVCVGACLSMKG 223 (584)
Q Consensus 151 g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 223 (584)
....||.-.+........++...+-.+.+. ++.+.......+.+..++.........+++++...+..+|++.
T Consensus 86 ~~~~G~~gv~~~~~i~sfYsvI~GWil~Y~~~s~tg~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~lt~~iv~~GV~~ 165 (439)
T COG0733 86 WEWIGWFGVLGGFLILSFYSVIGGWILSYLVKSLTGALPDTGEQFAQLFGQTISNPGLAVIFHLLFLVLTALIVSRGVKK 165 (439)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhHHh
Confidence 233333323333222222222222222211 1111110111111111212112234455566666677788887
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHhhcccc-c--------CCCCCCCCCchhHHHHHHHHHHHhhc-hhhhhhhhcccccC
Q 007943 224 -SSRFNSVATIVHIVILIFILITGLTQAN-T--------ANYAIFAPNGVRGILKASAVLFFAYV-GFDGVATLGEEVKN 292 (584)
Q Consensus 224 -~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~--------~~~~~~~~~g~~~~~~~~~~~~~~~~-G~e~~~~~a~E~k~ 292 (584)
..|.+.++.....+.++++.+-.+...+ . .+++... ....+..+...++|+.+ |+.....++.-+++
T Consensus 166 GIEk~~kimMP~Lfvl~i~Lvi~~~tLpGA~~G~~f~l~PD~s~l~--~~~v~~~AlGQ~FFsLSlG~g~mitYsSYL~k 243 (439)
T COG0733 166 GIEKANKIMMPLLFVLFIILVIRAVTLPGAMEGLKFLFKPDFSKLT--DPKVWLAALGQAFFSLSLGFGIMITYSSYLSK 243 (439)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHhcCCHHHcC--chhhHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 6778877777666666555554443211 0 0111111 14557788888899886 88888888888876
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHhcc---CCCCCCCC----ChHHHHHHHhC-chHHHHHHHHHHHHHHHHHHHH
Q 007943 293 PGRDIPIGLIGSMVITITVYCVLSATLCLMQ---PYSQIDVD----APFTLAFQAVG-MNWAKYIVALGALKGMTTVLLA 364 (584)
Q Consensus 293 p~r~~p~ai~~~~~~~~i~y~l~~~~~~~~~---~~~~~~~~----~p~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~ 364 (584)
+.|+++.-.........+-++..+.+.-.. +.+.-+.. ..++.++++.+ +.....+...+..++.+++..+
T Consensus 244 -~~~l~~sa~~v~~~n~~~s~lAGl~Ifpa~f~~g~~~~~GpgL~Fi~LP~if~~mp~G~~~~~lFFl~l~fAalTS~iS 322 (439)
T COG0733 244 -KSDLVSSALSIVLLNTLISLLAGLVIFPALFSFGADASQGPGLVFIVLPAVFNQMPLGTLFGILFFLLLLFAALTSAIS 322 (439)
T ss_pred -ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeeehhHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 678998888887777766666555543222 22211111 14566666554 2334444444444555555554
Q ss_pred HH
Q 007943 365 NV 366 (584)
Q Consensus 365 ~~ 366 (584)
.+
T Consensus 323 ml 324 (439)
T COG0733 323 ML 324 (439)
T ss_pred HH
Confidence 43
No 79
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=98.19 E-value=0.01 Score=61.47 Aligned_cols=312 Identities=16% Similarity=0.171 Sum_probs=165.1
Q ss_pred HHHhhhhhhHHccHHhHhhccCch---HHHHHHHHHHHHHHHHHHHHhhhhccccCCchhhhHHHHhchHHHHHHHHHHH
Q 007943 83 IGAVMGAGIFVLTGEAARNFAGPA---VIISYLISGISALLSVLCYTEFSVELPVAGGSFAYLRVELGDFVAYIAAGNIL 159 (584)
Q Consensus 83 ~~~~ig~gi~~~~~~~~~~~~G~~---~~~~~ii~~l~~~~~~~~~~el~~~~P~~Gg~y~~~~~~~g~~~g~~~g~~~~ 159 (584)
++.-.|+|=...|...=.+ +|.. +.+++++.++..=..+..-. -+.||.+.=..+..||..|.+......
T Consensus 13 FamFFGAGNLIFPp~lG~~-aG~~~~~a~~GF~lTgV~lP~Lgvia~------~~~~~~~~~l~~~v~~~f~~if~~~i~ 85 (427)
T PF05525_consen 13 FAMFFGAGNLIFPPFLGQQ-AGSNWWPAMIGFLLTGVGLPLLGVIAV------AKSGGGIEDLASRVGPKFALIFTILIY 85 (427)
T ss_pred HHHHhCCccccchHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHHHH------hhcCCCHHHHhcccCcHHHHHHHHHHH
Confidence 4444677876666655444 7764 45566666655333332211 123434444455667777766553222
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHccCCCCCcceeccccccccCcchhHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Q 007943 160 FEYVVSGASVARSWTS----YFATLCNHDPGSFRIHVSSVAEDYSHLDPIAVIVSFFVCVGACLSMKGSSRFNSVATIVH 235 (584)
Q Consensus 160 l~~~~~~a~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 235 (584)
+.- .-..+..+..+. -+...++. +..+ ...+..+++..+...+.+..-|...++..+++.+.
T Consensus 86 l~I-GP~~aiPRtaa~sfe~~i~p~~~~-~~~~------------~~~ifs~iFF~i~~~l~~~p~kivd~iGk~LTP~L 151 (427)
T PF05525_consen 86 LSI-GPLFAIPRTAAVSFEMGIAPFFPE-NSNI------------SLLIFSIIFFAITYLLSLNPSKIVDRIGKFLTPIL 151 (427)
T ss_pred HHH-HhcccCcchhhhhHHHhhhccCCc-cccc------------chhhhhHHHHHHHHHHHhchhhHHHHHHHHHHHHH
Confidence 111 011112222222 22222221 1111 12256667777778888889999999999999999
Q ss_pred HHHHHHHHHHhhcccccCCCCC---CCCCch-hHHHHHH----HHHHHhhchhhhhhhhcccccCCCCCchhHHHH----
Q 007943 236 IVILIFILITGLTQANTANYAI---FAPNGV-RGILKAS----AVLFFAYVGFDGVATLGEEVKNPGRDIPIGLIG---- 303 (584)
Q Consensus 236 ~~~~~~~~i~~~~~~~~~~~~~---~~~~g~-~~~~~~~----~~~~~~~~G~e~~~~~a~E~k~p~r~~p~ai~~---- 303 (584)
++.++++++.++.+...+...+ +.++.+ .++..+- ..+...|...-..+--....||+ |+..|....
T Consensus 152 L~~l~ilii~~i~~p~g~~~~~~~~y~~~~f~~Gf~eGY~TMD~laal~Fg~iIi~~i~~~g~~~~-k~~~~~~~~ag~i 230 (427)
T PF05525_consen 152 LILLAILIIKGIFSPIGPPQAPSGAYASNPFFKGFLEGYQTMDALAALAFGIIIINAIRQKGYKDK-KEIKKYTIKAGLI 230 (427)
T ss_pred HHHHHHHHHHHHHcCCCCccccchhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHH
Confidence 9999999988887633222111 111111 1222221 11223333332222223333343 334444444
Q ss_pred HHHHHHHHHHHHHHHHHhccCC--CCCCCCChHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCC
Q 007943 304 SMVITITVYCVLSATLCLMQPY--SQIDVDAPFTLAFQAVGMNWAKYIVALGALKGMTTVLLANVIGQARYFTHIGRTHM 381 (584)
Q Consensus 304 ~~~~~~i~y~l~~~~~~~~~~~--~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~ardg~ 381 (584)
+.....++|....+.-....+. ++.+..+.+..+.++.-++....++.+...++|+++..+...+++.......
T Consensus 231 a~~lL~~IY~gL~~lGa~~~~~~~~~~~g~~lL~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~---- 306 (427)
T PF05525_consen 231 AGILLALIYGGLAYLGATSSGSFPDDINGAELLSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYFSELF---- 306 (427)
T ss_pred HHHHHHHHHHHHHHHccCCcccccCCCCHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----
Confidence 4444444555444432222221 1222334566667777778899999999999999999999999988876533
Q ss_pred CchhhhcccCccccchHHH-HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHH
Q 007943 382 APPFLAAINGKTGTPVNAT-VVMSLANSVVAFFTSLDVLANLLSISTLFIFS 432 (584)
Q Consensus 382 lP~~~~~~~~~~~~P~~ai-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 432 (584)
| +.++... ++.++++.++. ...++.+.+++.--..+.|=
T Consensus 307 ---------~--kisY~~~v~i~~i~S~~ia-n~Gl~~Ii~~s~PiL~~iYP 346 (427)
T PF05525_consen 307 ---------P--KISYKVWVIIFTIFSFIIA-NLGLDQIIKISVPILMFIYP 346 (427)
T ss_pred ---------c--ccChHHHHHHHHHHHHHHH-HhCHHHHHHHHHHHHHHHhH
Confidence 2 3343333 22333443333 33567788877766666663
No 80
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=98.18 E-value=0.012 Score=63.12 Aligned_cols=282 Identities=11% Similarity=0.026 Sum_probs=152.5
Q ss_pred ccccCHHHHHHHHHHHh-hh-hhhHHccHHhHhhccCch-HHHHHH---HHHHHHHHHHHHHHhhhhccccCCchhhhHH
Q 007943 70 KKNLNWWDLIWFGIGAV-MG-AGIFVLTGEAARNFAGPA-VIISYL---ISGISALLSVLCYTEFSVELPVAGGSFAYLR 143 (584)
Q Consensus 70 ~r~l~~~~~~~~~~~~~-ig-~gi~~~~~~~~~~~~G~~-~~~~~i---i~~l~~~~~~~~~~el~~~~P~~Gg~y~~~~ 143 (584)
.|+++.+ +.+++.+.. .+ ...+-.+|.... .|.. .++... ...+.....+--+.+++ +.++.-..++|.+
T Consensus 37 gR~lg~~-v~~ls~~as~~s~~t~lG~~g~ay~--~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~-~~~~~~T~~d~l~ 112 (493)
T COG0591 37 GRSLGPF-VYALSAAASDTSGWTFLGLPGLAYA--SGLSGLWIAIGLLIGAFLLWLLFAPRLRRLA-KARGATTIPDFLE 112 (493)
T ss_pred CCcCChH-HHHHHHHHHHHHHHHHhcchHHHHh--cChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccCCccHHHHHH
Confidence 5889999 666665544 44 445555555544 5555 333222 33334445666666777 5566668999999
Q ss_pred HHhc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcceeccccccccCcchhHHHHHHHHHHHHHhccch
Q 007943 144 VELG-DFVAYIAAGNILFEYVVSGASVARSWTSYFATLCNHDPGSFRIHVSSVAEDYSHLDPIAVIVSFFVCVGACLSMK 222 (584)
Q Consensus 144 ~~~g-~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 222 (584)
+.|| +....+.+....+..+...+....+.+..++..++.+. . ....+....+.......|.|
T Consensus 113 ~Rf~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~gi~~-~---------------~~~~~~~~~v~~Yt~~gG~~ 176 (493)
T COG0591 113 ARFGSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFGISY-V---------------TGILIGALIVALYTFLGGLR 176 (493)
T ss_pred HHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCH-H---------------HHHHHHHHHHHHHHHHcChh
Confidence 9999 99999999999999999999999999999877776321 1 12223334444455556777
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcc-c----------ccCC---CCCCCC-CchhHHHH--H-HHHHHHhhchhhhhh
Q 007943 223 GSSRFNSVATIVHIVILIFILITGLTQ-A----------NTAN---YAIFAP-NGVRGILK--A-SAVLFFAYVGFDGVA 284 (584)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~i~~~~~-~----------~~~~---~~~~~~-~g~~~~~~--~-~~~~~~~~~G~e~~~ 284 (584)
...+...+=..+..+.+..+.+..... + ..++ ..++.. ..+..... . .......+...+...
T Consensus 177 av~~Td~iqg~im~i~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~ 256 (493)
T COG0591 177 AVVWTDFIQGLIMLIALIVIPILVLILFGGFGELFAVLASLAPLFLTHPFDGALSPIYIISLIAWGTLFLGYFGQPHILP 256 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhcccccccCcccccchHHHHHHHHHHHHHHhhhhcCchhhh
Confidence 777766665555555554444433321 0 0111 011111 11111111 1 111122333333333
Q ss_pred hhcccccCCCCCchhHHHHHHHHHHHHHHHHHHH-----HHhcc-CC----CCCCCCChHHHHHHHhCchHHHHHHHHHH
Q 007943 285 TLGEEVKNPGRDIPIGLIGSMVITITVYCVLSAT-----LCLMQ-PY----SQIDVDAPFTLAFQAVGMNWAKYIVALGA 354 (584)
Q Consensus 285 ~~a~E~k~p~r~~p~ai~~~~~~~~i~y~l~~~~-----~~~~~-~~----~~~~~~~p~~~~~~~~g~~~~~~~~~~~~ 354 (584)
+.-. .|+++ +.||........-.+.+++..++ ..... ++ .+.+.+..+.......-+++..-++...+
T Consensus 257 r~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~g~~~~ai 334 (493)
T COG0591 257 RFMA-AKSIK-SLPKSARLAGILWPLYCLLGAFLLGLLGIAYFPLLPDLSVPLLNPELVFPYLILALFPPWIAGLLLAAI 334 (493)
T ss_pred hhhh-hccHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCHHHHHHHHHHHHChHHHHHHHHHHH
Confidence 3333 44443 33433333333322222222111 11111 11 12234556777777777788887777777
Q ss_pred HHHHHHHHHHHHhhhHHHH
Q 007943 355 LKGMTTVLLANVIGQARYF 373 (584)
Q Consensus 355 ~~~~~~~~~~~~~~~sR~l 373 (584)
+.+..++..+.....|-.+
T Consensus 335 laAvmSt~ss~ll~~ss~~ 353 (493)
T COG0591 335 LAAVMSTASSQLLVASSAI 353 (493)
T ss_pred HHHHHHHHHHHHHhhhHHH
Confidence 7777777666666655443
No 81
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=98.14 E-value=0.023 Score=61.95 Aligned_cols=280 Identities=13% Similarity=0.044 Sum_probs=140.0
Q ss_pred ccccCHHHHHHHHHHHhhhhhhHHc-cHHhHhhccCchHHHHHHHHHHHHH-HHHHHHHhhhhccccCCchhhhHHHHhc
Q 007943 70 KKNLNWWDLIWFGIGAVMGAGIFVL-TGEAARNFAGPAVIISYLISGISAL-LSVLCYTEFSVELPVAGGSFAYLRVELG 147 (584)
Q Consensus 70 ~r~l~~~~~~~~~~~~~ig~gi~~~-~~~~~~~~~G~~~~~~~ii~~l~~~-~~~~~~~el~~~~P~~Gg~y~~~~~~~g 147 (584)
.|++++|..-....+..++...|.. +|... . .|...++.. ++..+.+ ...+.+++--++.-. --..+|.++.||
T Consensus 66 Gr~~~~~~~g~si~at~~SaasflG~~G~~y-~-~G~~~~~~~-~g~~~~~~i~~~~~a~~lrr~g~-~T~~d~l~~Rf~ 141 (549)
T TIGR02711 66 GGNITGFQNGLAIAGDYMSAASFLGISALVY-T-SGYDGLIYS-LGFLVGWPIILFLIAERLRNLGR-YTFADVASYRLK 141 (549)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHH-H-hChHHHHHH-HHHHHHHHHHHHHHHHHHHHcCC-ccHHHHHHHHcC
Confidence 5889998775555555565444443 44443 3 454422211 2333322 334445555444422 357777888887
Q ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcceeccccccccCcchhHHHHHHHHHHHHHhccchhHHH
Q 007943 148 -DFVAYIAAGNILFEYVVSGASVARSWTSYFATLCNHDPGSFRIHVSSVAEDYSHLDPIAVIVSFFVCVGACLSMKGSSR 226 (584)
Q Consensus 148 -~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 226 (584)
|....+.+....+..+........+.+..++.+++.+. ...+.+..++.......-|.|...+
T Consensus 142 s~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~gi~~----------------~~~iii~~~i~~~Yt~~GGm~av~~ 205 (549)
T TIGR02711 142 QRPIRILSACGSLVVVALYLIAQMVGAGKLIELLFGLNY----------------HVAVVLVGILMVMYVLFGGMLATTW 205 (549)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH----------------HHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 66777777766666666677777777777877765421 0122233334444555678888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccc--------------cCCCCCCCCCc----hhHHHHHHHHHHHhhchhhhhhhhcc
Q 007943 227 FNSVATIVHIVILIFILITGLTQAN--------------TANYAIFAPNG----VRGILKASAVLFFAYVGFDGVATLGE 288 (584)
Q Consensus 227 ~~~~~~~~~~~~~~~~~i~~~~~~~--------------~~~~~~~~~~g----~~~~~~~~~~~~~~~~G~e~~~~~a~ 288 (584)
.+.+-.++.+...+++.+..+.+.+ ++....+.|.+ ....+.......+...|..-..+-.=
T Consensus 206 td~iQ~~im~~g~i~~~~~~~~~~ggg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~P~~~~R~~ 285 (549)
T TIGR02711 206 VQIIKAVLLLFGATFMAFMVMKSVGFSFNTLFKEAMAVHPKGVAIMSPGGLVSDPISALSLGLGLMFGTAGLPHILMRFF 285 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhhCcccccccCCCccccchHHHHHHHHHHHHHhcCCchhheeee
Confidence 8777777666655444332222111 11111111221 11112111112223333322222222
Q ss_pred cccCCCCCchhHHHHHHHHHHHHHHHHHHHH---HhccCCC-CC-C--------CCChHHHHHHHhCchHHHHHHHHHHH
Q 007943 289 EVKNPGRDIPIGLIGSMVITITVYCVLSATL---CLMQPYS-QI-D--------VDAPFTLAFQAVGMNWAKYIVALGAL 355 (584)
Q Consensus 289 E~k~p~r~~p~ai~~~~~~~~i~y~l~~~~~---~~~~~~~-~~-~--------~~~p~~~~~~~~g~~~~~~~~~~~~~ 355 (584)
-.||+ |+..|+..++......+|+...+.- ....+++ +. + .+..........++.++.-++....+
T Consensus 286 taks~-k~ar~s~~~~~~~~~~~~~~~~~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~glv~A~~~ 364 (549)
T TIGR02711 286 TVSDA-KEARKSVFYATGFMGYFYILTFIIGFGAILLVSANPEFKDATGALIGGNNMAAVHLANAVGGNLFLGFISAVAF 364 (549)
T ss_pred ecCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccccCCCcchHHHHHHHHHccHHHHHHHHHHHH
Confidence 34664 7788888888777666665543221 1112211 11 0 11222333345555666556665566
Q ss_pred HHHHHHHHHHHhhhH
Q 007943 356 KGMTTVLLANVIGQA 370 (584)
Q Consensus 356 ~~~~~~~~~~~~~~s 370 (584)
.+.+++..+.+.+.+
T Consensus 365 AA~mST~~s~l~a~s 379 (549)
T TIGR02711 365 ATILAVVAGLTLAGA 379 (549)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666656655555
No 82
>PRK00701 manganese transport protein MntH; Reviewed
Probab=98.13 E-value=0.013 Score=61.63 Aligned_cols=76 Identities=12% Similarity=0.058 Sum_probs=47.6
Q ss_pred cCchHHHHHHHHHHHHHHHHHHHHhhhhccc-cCC-chhhhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007943 103 AGPAVIISYLISGISALLSVLCYTEFSVELP-VAG-GSFAYLRVELGDFVAYIAAGNILFEYVVSGASVARSWTSYFATL 180 (584)
Q Consensus 103 ~G~~~~~~~ii~~l~~~~~~~~~~el~~~~P-~~G-g~y~~~~~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~ 180 (584)
-|-..+|..+++.+ ....+-|++.|+- ..| |.-+-.++.+||.+++.......+........+..+.+.-++.+
T Consensus 63 ~Gy~LLW~llls~~----~~~~~Q~~~~RlgivTG~~l~~~ir~~~~~~~~~~~~~~~~l~~~~~~~~e~~G~a~al~ll 138 (439)
T PRK00701 63 FGYTLLWVILLSNL----MAMLLQSLSAKLGIATGRDLAQACRDRYPRPVVWFLWIQAELAIMATDLAEVIGAAIALKLL 138 (439)
T ss_pred HCHHHHHHHHHHHH----HHHHHHHHHhHhhhhcCCCHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555554444 4445555655554 233 68888899999998887766666666666666666666666655
Q ss_pred cc
Q 007943 181 CN 182 (584)
Q Consensus 181 ~~ 182 (584)
++
T Consensus 139 ~g 140 (439)
T PRK00701 139 FG 140 (439)
T ss_pred hC
Confidence 54
No 83
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=98.11 E-value=0.0047 Score=63.61 Aligned_cols=251 Identities=15% Similarity=0.156 Sum_probs=126.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHhhhhccc--cCCchhhhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 007943 104 GPAVIISYLISGISALLSVLCYTEFSVELP--VAGGSFAYLRVELGDFVAYIAAGNILFEYVVSGASVARSWTSYFATLC 181 (584)
Q Consensus 104 G~~~~~~~ii~~l~~~~~~~~~~el~~~~P--~~Gg~y~~~~~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~ 181 (584)
|...+|..+++ ....+.+-|++.|+- +.-+..+-.++.+||.+++.......+........+..+.+.-++.++
T Consensus 12 Gy~Llw~lll~----~~~~~~~q~~~~R~~~~Tg~~l~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~g~a~al~ll~ 87 (358)
T PF01566_consen 12 GYSLLWVLLLS----NLLKYVFQEMAARLGIVTGKGLAEGIRERFGRGWAWFLWILIFLANIATQAAEIIGIAIALNLLF 87 (358)
T ss_pred CHHHHHHHHHH----HHHHHHHHHHHHHHhhhcCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33444444444 445555556665555 233566777889999999988888888888777777777777776665
Q ss_pred cCCCCCcceeccccccccCcchhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHhhc-ccccCC-CC---
Q 007943 182 NHDPGSFRIHVSSVAEDYSHLDPIAVIVSFFVCVGACLSMKGSSRFNSVATIVHIVILIFILITGLT-QANTAN-YA--- 256 (584)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~-~~--- 256 (584)
+.+. + ...++..+....+.....+..++++.++..+.....+.+++..+. +.+... ..
T Consensus 88 g~~~--~---------------~~~~~~~~~~~~ll~~~~~~y~~~E~~~~~lv~~m~l~f~~~~~~~~p~~~~~~~g~~ 150 (358)
T PF01566_consen 88 GIPL--W---------------IWVLLVAVIAILLLWLSSGGYRRLERILKVLVAVMVLAFLIAAFIVHPDWGEVARGLV 150 (358)
T ss_pred CCCc--H---------------HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHhhhcc
Confidence 3221 1 222222222223323224446666666666555554433333322 222111 11
Q ss_pred -CCCCCchhHHHHHHHHHHHhhchhhhhhhhcc--c-ccCCC---CC--chhHHHHHHHHHHHHHHHHHHHH----Hhcc
Q 007943 257 -IFAPNGVRGILKASAVLFFAYVGFDGVATLGE--E-VKNPG---RD--IPIGLIGSMVITITVYCVLSATL----CLMQ 323 (584)
Q Consensus 257 -~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~--E-~k~p~---r~--~p~ai~~~~~~~~i~y~l~~~~~----~~~~ 323 (584)
|-.|. ...+...+...-+....++...+-+- | -.+++ ++ .+. ...-..+..+...+.+.++ ....
T Consensus 151 ~P~~p~-~~~~~~~valiGttv~p~~lf~~s~~~~~k~~~~~~~~~~~~l~~-~~~D~~~g~~~~~li~~ai~i~~A~~l 228 (358)
T PF01566_consen 151 VPSIPG-PGSLLFAVALIGTTVMPHNLFLHSSLVQEKGWTGNRSRPDEALKY-ARFDTIIGMIVSFLINVAILIVAAAVL 228 (358)
T ss_pred CCCCcc-hhHHHHHHHHHHHhhhHHHHHHHHHHhhhcccCCCcchhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22222 12223323222233333333322221 1 11111 11 222 2222222222222222221 1111
Q ss_pred C--CCCCCCCChHHHHHHHhCc-hHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 007943 324 P--YSQIDVDAPFTLAFQAVGM-NWAKYIVALGALKGMTTVLLANVIGQARYFTHIG 377 (584)
Q Consensus 324 ~--~~~~~~~~p~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a 377 (584)
. ..+....+...+.++..-+ ++...++.++.+.+.+++..+...+.++.+.+.-
T Consensus 229 ~~~~~~~~~~~~~~~~L~~~~G~~~a~~lF~igl~~a~fss~i~~~~~~~~~~~~~~ 285 (358)
T PF01566_consen 229 YPGGSEVETAAQAAQALEPLLGSPWARYLFAIGLFAAGFSSSITATLAGAYVLADFL 285 (358)
T ss_pred cccccchhhHHHHHHHHHHhcCchHHHHhHHHHHHHHHHhhHHHhccccceehHhhh
Confidence 1 1222333456677776656 7999999999999999999999888888877654
No 84
>PLN00151 potassium transporter; Provisional
Probab=98.06 E-value=0.0024 Score=69.70 Aligned_cols=279 Identities=13% Similarity=0.069 Sum_probs=134.6
Q ss_pred chhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHh---hcccccCCCCCCCCC---------chhHHHHH
Q 007943 202 LDPIAVIVSFFVCVGACLSMKGSSRFNSVATIVHIVILIFILITG---LTQANTANYAIFAPN---------GVRGILKA 269 (584)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~~~~~~~~~~~~~---------g~~~~~~~ 269 (584)
...+++++++.+..+.-+|....+++ ++.+.++-++.+..+| +.+.++.-+..++|. +.. -+..
T Consensus 274 VV~Is~~ILv~LF~~Q~~GT~kVg~~---FgPImllWFl~i~~iGiynI~~~~p~Vl~AlnP~Y~~~Ff~~~~~~-gw~~ 349 (852)
T PLN00151 274 VVMISVAFLVILFSVQRFGTSKVGFA---FGPALALWFCSLGGIGIYNLVKYDSSVFRAFNPVYIYYFFKRNSTK-AWSA 349 (852)
T ss_pred ehhHHHHHHHHHHHHHhccchhhhhh---hccHHHHHHHHHHHHHHHHHHhcCHHHHhhhCHHHHHHHHHhCCCc-eEEE
Confidence 34567777777777777886555544 4444444444444444 444445544444442 111 1223
Q ss_pred HHHHHHhhchhhhhhhhcccccCCCCCchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHhCchHHHHH
Q 007943 270 SAVLFFAYVGFDGVATLGEEVKNPGRDIPIGLIGSMVITITVYCVLSATLCLMQPYSQIDVDAPFTLAFQAVGMNWAKYI 349 (584)
Q Consensus 270 ~~~~~~~~~G~e~~~~~a~E~k~p~r~~p~ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~ 349 (584)
+..++.+.+|.|+... +-=.-.+|.+..|-..-+.=+.++--+..-++...-| + +.++||... ..+++.+-
T Consensus 350 LGgVvLciTGaEALfA--DLGHFg~~sIqiaw~~~V~P~LlL~Y~GQaA~L~~~p-~--~~~npFy~s----vP~~~~wP 420 (852)
T PLN00151 350 LGGCVLCATGSEAMFA--DLGYFSVRSIQLAFTCLVLPCLLLAYMGQAAYLMKNP-D--SAEQIFFSS----VPSSLFWP 420 (852)
T ss_pred ecceeeeeccchhhhc--ccCCCCccceeeeehhhHHHHHHHHHcchHHHHhcCc-c--cccCcHHHh----CCchhHHH
Confidence 5556788899996432 2223344555444433222222222223333333222 1 124555433 22344444
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCch-hhhcccCccc----cchHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 007943 350 VALGALKGMTTVLLANVIGQARYFTHIGRTHMAPP-FLAAINGKTG----TPVNATVVMSLANSVVAFFTSLDVLANLLS 424 (584)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~sR~l~~~ardg~lP~-~~~~~~~~~~----~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~ 424 (584)
+.+++.++..-+..+...++=-+....-+=|.+|+ ..-+.+++.. .|...-+++....++...+.+-+.+.+..+
T Consensus 421 ~~vlAtlAaIIASQA~ISgtFSii~Qai~Lg~fPRvkIvHTS~~~~GQIYIP~vNw~Lmv~~i~v~l~F~~s~~l~~AYG 500 (852)
T PLN00151 421 VFLIANLAALIASRAMTTATFSCIKQSMALGCFPRLKIIHTSRKFMGQIYIPVINWFLLVMCLVVVCSFRSITDIGNAYG 500 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEeCCCccCCceeeHHHHHHHHHHHHhheeeecCHHHHHHHhh
Confidence 44444444333334444444444444456679994 3444443322 465443333333333344456777888877
Q ss_pred HHHHHHHHHHHHHH-HhhhhhcCCCCCccchhHHHHHHHHH----HHHHhHhhhhccccCCCcchhhHHHHHHHHHHHHH
Q 007943 425 ISTLFIFSLVALAL-LVRRYYVAGETSECDQKKLIVFLALI----ISSSIASSAYWATSDNGWIGYIVTVPVWFLATMGL 499 (584)
Q Consensus 425 ~~~~~~~~~~~~~~-i~~r~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (584)
++.....+++.+-+ ++.+..++ +..+++.+..+ +=...+.+...-....+|+++.+.+++..+.....
T Consensus 501 iAV~~vM~iTT~L~~lV~~~~W~-------~~~~~~~~f~~~F~~ie~~f~sA~l~Ki~~GGW~Pl~la~v~~~iM~~W~ 573 (852)
T PLN00151 501 IAEVGVMMVSTILVTLVMLLIWQ-------TNIFLVLCFPVVFLSVELVFFSSVLSSVGDGGWIPLVFASVFLCIMYIWN 573 (852)
T ss_pred hhhhhhhhHHHHHHHHHHHHHcC-------ccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHH
Confidence 77766665554422 22222211 11122222222 22233344444455688888877777666665554
Q ss_pred h
Q 007943 500 Q 500 (584)
Q Consensus 500 ~ 500 (584)
+
T Consensus 574 y 574 (852)
T PLN00151 574 Y 574 (852)
T ss_pred H
Confidence 4
No 85
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=98.02 E-value=0.0035 Score=64.95 Aligned_cols=249 Identities=13% Similarity=0.111 Sum_probs=134.5
Q ss_pred ccccCHHHHHHHHHHHhhhhhhHHccHHhHhhccCch-HHHHHHHHHHHHHHHHHHHHhhhhccccCCchhhhHHHHhch
Q 007943 70 KKNLNWWDLIWFGIGAVMGAGIFVLTGEAARNFAGPA-VIISYLISGISALLSVLCYTEFSVELPVAGGSFAYLRVELGD 148 (584)
Q Consensus 70 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ii~~l~~~~~~~~~~el~~~~P~~Gg~y~~~~~~~g~ 148 (584)
+++-+.+..+.--...++|+|++..|...- . .|-. .++.....+.+.....+.+.+.+++.++. ....-.++.+|+
T Consensus 3 ~~~~s~~~~v~nl~~ti~GaGIl~~P~afk-~-~Giv~gi~li~~~a~~s~~sl~~l~~~a~~~~~~-ty~~l~~~~~g~ 79 (411)
T KOG1305|consen 3 SGKTSFRSAVFNLVNTIMGAGILAMPYAFK-T-AGLLLGILLIVLSAFLSLLSLYLLSKCAKKSGER-TYSSLGDLIFGK 79 (411)
T ss_pred CCccchhhhHHHHHhhhhccHHHHhHHHHH-H-hcHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCCC-CHHHHHHHHcCC
Confidence 455677888888888999999998776553 3 6654 66667777788888888888888888866 444445566665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC-CCcceeccccccccCcchhHHHHHHHHHHHHHhccchhHHHH
Q 007943 149 FVAYIAAGNILFEYVVSGASVARSWTSYFATLCNHDP-GSFRIHVSSVAEDYSHLDPIAVIVSFFVCVGACLSMKGSSRF 227 (584)
Q Consensus 149 ~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 227 (584)
..........-...+ .+.++.....+.+........ +.+.. .++.+......+....++.-+++.+ ... .-+.
T Consensus 80 ~g~~~~~v~~~~~~~-g~i~yliiigd~~p~~~~~~~~~~~~~--~~~~~~~~~ill~~~~~i~pLsl~k--~l~-~Lk~ 153 (411)
T KOG1305|consen 80 LGKVDAAVAVKCFGV-GMVSYLIIIGDLLPGFIRSLFLDEEGG--SHYLDRNFLILLVLLFIILPLSLLK--NLD-SLKY 153 (411)
T ss_pred CceeeehhhHHhhhc-cceEEEEEEccccchhhhhcccccccc--cccccceeEeehHHHHHHHHHHHHH--hhh-hHHH
Confidence 542211110000000 000000001111111000000 00000 0000000001122222222222222 111 2333
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccc--CCCCCCCCCch--hHHHHHHHHHHHhhchhhhhhhhcccccCCC-CCchhHHH
Q 007943 228 NSVATIVHIVILIFILITGLTQANT--ANYAIFAPNGV--RGILKASAVLFFAYVGFDGVATLGEEVKNPG-RDIPIGLI 302 (584)
Q Consensus 228 ~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~g~--~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~-r~~p~ai~ 302 (584)
....+...+..++.+++......+. .......+++. .++..+++...++|...+.....-.|+|||+ |++-+...
T Consensus 154 tS~~s~~~~~~fv~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s~~~i~~v~~ 233 (411)
T KOG1305|consen 154 TSALSLASVVYFVVLVVYKYFQGPCALGRLSYLVPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNELKDRSVKKIQRVSN 233 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccCCcccccCCcchhhhhhhhhhhhheeeeccccceeeeeeeeCchHHHHHHHHH
Confidence 4444444444444444433333221 11122233333 5789999999999999999999999999984 57888888
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCC
Q 007943 303 GSMVITITVYCVLSATLCLMQPYSQ 327 (584)
Q Consensus 303 ~~~~~~~i~y~l~~~~~~~~~~~~~ 327 (584)
.+.....++|......-....+++.
T Consensus 234 ~~~~~~~~iy~~~g~~GYL~Fg~~v 258 (411)
T KOG1305|consen 234 IAIILATLIYLLTGLFGYLTFGDLV 258 (411)
T ss_pred HHHHHHHHHHHHHHHhhhheecccc
Confidence 8888899999988888776666544
No 86
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=97.90 E-value=0.00053 Score=72.84 Aligned_cols=176 Identities=18% Similarity=0.104 Sum_probs=97.9
Q ss_pred cccccCHHHHHHHHHHHhhhhhhHHccHHhHhhccCch-HHHHHHHHHHHHHHHHHHHHhhhhccccCCchhhhHHHHhc
Q 007943 69 MKKNLNWWDLIWFGIGAVMGAGIFVLTGEAARNFAGPA-VIISYLISGISALLSVLCYTEFSVELPVAGGSFAYLRVELG 147 (584)
Q Consensus 69 l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ii~~l~~~~~~~~~~el~~~~P~~Gg~y~~~~~~~g 147 (584)
-+|+-++++.+.+=++..+....+..-.......-+.. ++++.+++.++........+.++.+.-. ......|..||
T Consensus 5 ~~R~~~~~~~~~iW~~~~~~~~~~~~G~~~~~~gL~~~~ailai~~G~~l~~i~~~~~~~~G~r~Gl--~~~v~sR~~FG 82 (440)
T PF02133_consen 5 SERTWSPWSLFWIWFGANISIATFVTGALGVALGLSFWQAILAILIGNLLGAILVALMGIIGPRTGL--PTMVLSRASFG 82 (440)
T ss_dssp GG--B-HHHHHHHHCHHH-SCHHH-HHHHHHCCCS-HHHHHHHHHHHHHHHHHHHHHHTHHHHCC-----HHHHTTTTS-
T ss_pred hcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHhcccccccCC--CchhcchhccC
Confidence 36778888888887776655444432222212112223 6777777777766666666666665533 36666788999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcceecc-ccccccCcchhHHHHHHHHHHHHHhccchhHHH
Q 007943 148 DFVAYIAAGNILFEYVVSGASVARSWTSYFATLCNHDPGSFRIHVS-SVAEDYSHLDPIAVIVSFFVCVGACLSMKGSSR 226 (584)
Q Consensus 148 ~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 226 (584)
.....+......+..+...+.+....++.++...+...+.+.. .+ ..........+..++..++.......|.+...+
T Consensus 83 ~~Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~l~~ 161 (440)
T PF02133_consen 83 YRGSKLPSLLRAISAIGWFAVNTWLGGQALAALLGIIFGSFLW-IGNAIIGIALPLWVCFFIFWLIQTLFAIYGMKALRR 161 (440)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC------HH-----------HHHHHHHHHHHHHHCTHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcchh-hhhhhhcchhhHHHHHHHHHHHHHHHHhcCHHHHHh
Confidence 9888888888888888888999888888888877654221100 00 000000001122223334455566778888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 007943 227 FNSVATIVHIVILIFILITGL 247 (584)
Q Consensus 227 ~~~~~~~~~~~~~~~~~i~~~ 247 (584)
++.+...+.....+...+...
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~ 182 (440)
T PF02133_consen 162 LAVIAAPILLVVFIGMLIWAL 182 (440)
T ss_dssp HHHCCHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHhhhhheeEEEe
Confidence 887777665555444444333
No 87
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=97.90 E-value=0.042 Score=56.85 Aligned_cols=122 Identities=14% Similarity=0.068 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccc--cCCchhhhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCC
Q 007943 109 ISYLISGISALLSVLCYTEFSVELP--VAGGSFAYLRVELGDFVAYIAAGNILFEYVVSGASVARSWTSYFATLCNHDPG 186 (584)
Q Consensus 109 ~~~ii~~l~~~~~~~~~~el~~~~P--~~Gg~y~~~~~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~ 186 (584)
+.++..-+++.+..+..-|++.+.- +.-|.-+-.++.++|.+++..-....+.-+...-.+..+.+.-++.+++...
T Consensus 48 y~ll~vills~l~~~~~Q~~~arLgivTG~~laq~ir~~y~~~~~~~~~~~~~i~~~at~iae~~G~aial~ll~~ip~- 126 (416)
T COG1914 48 YSLLWVILLSNLMAYILQELSARLGIVTGKGLAEAIRERYLPGLGILLWILAEIAGIATDIAEVAGIAIALNLLFGIPL- 126 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChH-
Confidence 3344444555566666666666665 2224677778889999988887777777777777777777777777765321
Q ss_pred CcceeccccccccCcchhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 007943 187 SFRIHVSSVAEDYSHLDPIAVIVSFFVCVGACLSMKGSSRFNSVATIVHIVILIFILITGLTQ 249 (584)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 249 (584)
.++.++..+..++.... |-..+++.+...+.+...+.+....+..
T Consensus 127 -----------------~~g~iItav~~~iil~~-~~~r~~E~~v~~l~~~~~i~~~~~~~~~ 171 (416)
T COG1914 127 -----------------IIGAVITAVDVLIILLL-KGYRLLERVVLILGLVLVILFVYVAFVA 171 (416)
T ss_pred -----------------HHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 23333333333332222 2456666666666655555555554443
No 88
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=97.90 E-value=0.035 Score=58.81 Aligned_cols=350 Identities=11% Similarity=0.073 Sum_probs=166.2
Q ss_pred cccccCHHHHHHHHHHHhhhhhhHHcc-----------HHhHhhccCc--------------hHHHHHHHHHHHHHHHHH
Q 007943 69 MKKNLNWWDLIWFGIGAVMGAGIFVLT-----------GEAARNFAGP--------------AVIISYLISGISALLSVL 123 (584)
Q Consensus 69 l~r~l~~~~~~~~~~~~~ig~gi~~~~-----------~~~~~~~~G~--------------~~~~~~ii~~l~~~~~~~ 123 (584)
-|.+++.++-+++.++.-+|.|+..-. +.... .+. ..+.+|.+-++..+..++
T Consensus 71 ~kPefS~~sW~aMlf~aGig~GivfwgvaEP~~~~~~pP~~~~--p~s~~A~~~A~~~~~fHWG~~~Wa~Y~~~~l~~ay 148 (485)
T PF02028_consen 71 AKPEFSTFSWFAMLFCAGIGAGIVFWGVAEPLYHYQSPPFGIE--PGSPEAAEWAMAYSFFHWGFHAWAIYALVGLAIAY 148 (485)
T ss_dssp S--SS-HHHHHHHHHHHCSSHHHHHHHHHHHHHHHHS-STT-T--TT-HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHH
T ss_pred CCCCCCchHHHHHHHHHHhcchhhcchhHhhHHHhcCCCCCCC--CCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhe
Confidence 467899999999999999988865421 11100 110 134566777777778888
Q ss_pred HHHhhhhccccCCchhhhHHHHhchHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHccCCCCCcceecccccccc
Q 007943 124 CYTEFSVELPVAGGSFAYLRVELGDFVAYIAAGNILFEY----VVSGASVARSWTSYFATLCNHDPGSFRIHVSSVAEDY 199 (584)
Q Consensus 124 ~~~el~~~~P~~Gg~y~~~~~~~g~~~g~~~g~~~~l~~----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (584)
.+..-.....-+...|....+...+..|.+.=....++- ....+......+.-++..++.+....
T Consensus 149 ~~y~k~~~~~~ss~l~pl~g~~~~g~~g~~ID~l~i~a~~~GvatslGlg~~qi~~gl~~~~Gi~~~~~----------- 217 (485)
T PF02028_consen 149 FFYNKGKPLRISSALYPLLGDRINGPLGKIIDILAIFATIFGVATSLGLGVPQISAGLSSLFGIPNTFG----------- 217 (485)
T ss_dssp HHHTS---SSGGGGCHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTSSSTHH-----------
T ss_pred eeeecCCCCchhhhhhhhcCCcccCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHcCCCCchH-----------
Confidence 777744433344445555444333444544444333333 33444455555566666665432211
Q ss_pred CcchhHHHHHHHHHHHHHhccchh-HHHHHHHHHHHHHHHHHHHHHHhhcc--------------cc---cC-CCCCCCC
Q 007943 200 SHLDPIAVIVSFFVCVGACLSMKG-SSRFNSVATIVHIVILIFILITGLTQ--------------AN---TA-NYAIFAP 260 (584)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~--------------~~---~~-~~~~~~~ 260 (584)
....+.+++.++.+.-...|++. .+++.++-..+.+..++.+.+.+-.. .+ .+ +..+..+
T Consensus 218 -~~~~ii~~~~~i~~~S~~~Gl~kGIk~LS~~n~~l~~~ll~~vl~~Gpt~fil~~~~~s~G~yl~~f~~~s~~t~~~~~ 296 (485)
T PF02028_consen 218 -LQIIIIIVITVIFTISAVSGLDKGIKRLSNINVYLAFALLLFVLLFGPTVFILNLFTESIGDYLQNFFRMSLWTDPFGN 296 (485)
T ss_dssp -HHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHT--TTTTT
T ss_pred -HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcccccccC
Confidence 12234444455555555666644 34444444444444443333332110 00 00 0113333
Q ss_pred Cc-hhHHHHHHHHHHHhhchhhhhhhhcccccCCCCCchhHHHHHHHHHHHHHHHHHHHHHh-ccCCC-----CC---CC
Q 007943 261 NG-VRGILKASAVLFFAYVGFDGVATLGEEVKNPGRDIPIGLIGSMVITITVYCVLSATLCL-MQPYS-----QI---DV 330 (584)
Q Consensus 261 ~g-~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~r~~p~ai~~~~~~~~i~y~l~~~~~~~-~~~~~-----~~---~~ 330 (584)
.+ |.+-+..+..+.|.=-+.-....++.=.| .|+++.-+...++...+...+....... ....+ ++ +.
T Consensus 297 ~~~w~~~WTvFYwaWWiawaPfvG~FiArISk--GRTIRE~il~~~~~psl~~~~wf~ifGg~al~~~~~g~~~~~~~~~ 374 (485)
T PF02028_consen 297 SGQWPQDWTVFYWAWWIAWAPFVGLFIARISK--GRTIREFILGVLLVPSLFCFLWFSIFGGYALYLQLSGAGDLAAANE 374 (485)
T ss_dssp TTHHHHHTHHHHHHHHHHTHHHHHHHHHHCTT--TSBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTSS-HHHHHH
T ss_pred cccccCCCHHHHHHHHHHHHHHHHHHHhhhcC--CcCHHHHHHHHHHhhHHHHHHHHHHHCchHHhhHhhhhhhHHHHhh
Confidence 44 66666666666665444444555555555 3788666655555544433322222111 11111 11 11
Q ss_pred CChHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCchhhhcccCccccchHHHH--HHHHHHH
Q 007943 331 DAPFTLAFQAVGMNWAKYIVALGALKGMTTVLLANVIGQARYFTHIGRTHMAPPFLAAINGKTGTPVNATV--VMSLANS 408 (584)
Q Consensus 331 ~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~ardg~lP~~~~~~~~~~~~P~~ai~--~~~~~~~ 408 (584)
+++-...++.+..-++..++....++..+....+..-+.+..+-.++-+| +.+| ..+.+..| +.++++.
T Consensus 375 ~g~~~a~~~~l~~lP~~~i~~~~~lil~~~f~vTs~DS~~~~la~~s~~~-------~~ep--~~~~ri~W~~~~~~~a~ 445 (485)
T PF02028_consen 375 QGPEAALFAFLEQLPLSKILSILFLILIFIFFVTSADSATYVLAMLSSKG-------DEEP--PRWLRIFWGLIIGALAI 445 (485)
T ss_dssp H-HHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-------TSSS---HHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHcCC-------CCCC--chHHHHHHHHHHHHHHH
Confidence 12222222222222233445555555555556666667777777777665 2222 22222222 2333444
Q ss_pred HHHHhhcH---HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 007943 409 VVAFFTSL---DVLANLLSISTLFIFSLVALALLVRRY 443 (584)
Q Consensus 409 ~~~~~~~~---~~l~~~~~~~~~~~~~~~~~~~i~~r~ 443 (584)
.+...+.+ +.+..+.++...+..++.+.+.++.-|
T Consensus 446 ~ll~~ggl~~lq~~~ii~~lP~~~v~~~~~~~~~k~l~ 483 (485)
T PF02028_consen 446 VLLLIGGLDALQSASIIGGLPFSFVMLLMCISFIKALK 483 (485)
T ss_dssp HHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444444 445555555666666666666665443
No 89
>PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members.; GO: 0015079 potassium ion transmembrane transporter activity, 0071805 potassium ion transmembrane transport, 0016020 membrane
Probab=97.85 E-value=0.02 Score=60.53 Aligned_cols=229 Identities=17% Similarity=0.176 Sum_probs=120.3
Q ss_pred chhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHhhccc--ccCCCCCCCC---------CchhHHHHHH
Q 007943 202 LDPIAVIVSFFVCVGACLSMKGSSRFNSVATIVHIVILIFILITGLTQA--NTANYAIFAP---------NGVRGILKAS 270 (584)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~---------~g~~~~~~~~ 270 (584)
...+++++++.+..+.-+|....+++ ++.+.++=++.+.+.|+... +++-+..++| +++.+ +..+
T Consensus 132 Vv~it~~ILv~LF~iQ~~GT~~ig~~---FgPim~~WF~~l~~~G~~~I~~~p~Vl~A~nP~yai~f~~~~~~~~-~~~L 207 (534)
T PF02705_consen 132 VVPITIAILVGLFAIQRFGTAKIGKL---FGPIMLLWFLTLGVLGLYNIIQHPEVLKALNPYYAIRFFIRNGWIG-FFVL 207 (534)
T ss_pred ehhHHHHHHHHHHHHHhhhhhHHHHH---HhHHHHHHHHHHHHHHHHHHhhCHHHHHHhCHHHHHHHHHHcCCch-hhhc
Confidence 34567777777777777786655554 55555555555555554431 2332223333 23322 3345
Q ss_pred HHHHHhhchhhhhhhhccccc-CCCCCchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHhCchHHHHH
Q 007943 271 AVLFFAYVGFDGVATLGEEVK-NPGRDIPIGLIGSMVITITVYCVLSATLCLMQPYSQIDVDAPFTLAFQAVGMNWAKYI 349 (584)
Q Consensus 271 ~~~~~~~~G~e~~~~~a~E~k-~p~r~~p~ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~ 349 (584)
..++.+.+|-|+--. ++- -.+|.+.++-..-+.-+.++.-+..-+....-|. +.++|+....- .++.+-
T Consensus 208 G~V~L~~TGaEALyA---DmGHfg~~~Ir~aw~~~V~PaL~LnY~GQgA~ll~~p~---~~~npFf~~~P----~~~~~p 277 (534)
T PF02705_consen 208 GAVFLCVTGAEALYA---DMGHFGRKPIRIAWFFLVFPALLLNYFGQGALLLSHPE---AVSNPFFLLIP----EWLLWP 277 (534)
T ss_pred chHHHHHhhHHHHHh---hhccccchhhhhhHHHHHHHHHHHHHccHHHHHHcCcc---hhhhHHHHHhH----HHHHHH
Confidence 667889999997543 333 3455554444432222222222222222222221 12566665443 355444
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCch-hhhcccCcc-c---cchHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 007943 350 VALGALKGMTTVLLANVIGQARYFTHIGRTHMAPP-FLAAINGKT-G---TPVNATVVMSLANSVVAFFTSLDVLANLLS 424 (584)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~sR~l~~~ardg~lP~-~~~~~~~~~-~---~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~ 424 (584)
+.+.+.++..-+..+...++--+..+.-+-|.+|+ ...+.+++. | .|...-++......+...+.+-+.+.+..+
T Consensus 278 ~~ilAtlAtIIASQA~Isg~FSl~~Qai~Lg~~Pr~~I~hTS~~~~GQIYIP~vNw~L~i~~i~vvl~F~~S~~la~AYG 357 (534)
T PF02705_consen 278 MVILATLATIIASQAVISGAFSLTRQAIQLGYFPRLKIVHTSEKEEGQIYIPEVNWLLMIGVIAVVLGFRSSSNLAAAYG 357 (534)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEECCcccCCcEechHHHHHHHHHHHhhheEECChHHHHHHHH
Confidence 44444444444445555555555666667889995 244444333 2 465554444444444444567788888888
Q ss_pred HHHHHHHHHHHHHHH-hhhhh
Q 007943 425 ISTLFIFSLVALALL-VRRYY 444 (584)
Q Consensus 425 ~~~~~~~~~~~~~~i-~~r~~ 444 (584)
++......++.+-.. +.|++
T Consensus 358 iAVt~tM~iTT~L~~~v~~~~ 378 (534)
T PF02705_consen 358 IAVTGTMLITTILLFLVMRRV 378 (534)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 888877777665333 34433
No 90
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=97.54 E-value=0.15 Score=52.97 Aligned_cols=310 Identities=13% Similarity=0.100 Sum_probs=153.7
Q ss_pred HHHhhhhhhHHccHHhHhhccCch---HHHHHHHHHHHHHHHHHHHHhhhhccccCCchhhhHHHHhchHHHHHHHHHHH
Q 007943 83 IGAVMGAGIFVLTGEAARNFAGPA---VIISYLISGISALLSVLCYTEFSVELPVAGGSFAYLRVELGDFVAYIAAGNIL 159 (584)
Q Consensus 83 ~~~~ig~gi~~~~~~~~~~~~G~~---~~~~~ii~~l~~~~~~~~~~el~~~~P~~Gg~y~~~~~~~g~~~g~~~g~~~~ 159 (584)
++.-.|+|=...|...=.+ +|.. +.+++++.++..=..+..- -.. ..|+..+.. +..||..|.+......
T Consensus 18 FamFFGAGNLIFPp~LG~~-aG~~~~~a~~GF~iT~VglPlLgiia----va~-~~g~~~~l~-~rv~~~f~~~f~~~i~ 90 (439)
T PRK15433 18 FALFVGAGNIIFPPMVGLQ-AGEHVWTAAFGFLITAVGLPVLTVVA----LAK-VGGGVDSLS-TPIGKVAGVLLATVCY 90 (439)
T ss_pred HHHHhcCcchhccHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHHH----Hhh-cCCCHHHHh-hhcchHHHHHHHHHHH
Confidence 3444688877777766555 7764 4556666665533332221 111 114444444 4567776665532211
Q ss_pred HHHHHHHHH--HHHHHHHHHHHHccCCCCCcceec-cccccccCcchhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Q 007943 160 FEYVVSGAS--VARSWTSYFATLCNHDPGSFRIHV-SSVAEDYSHLDPIAVIVSFFVCVGACLSMKGSSRFNSVATIVHI 236 (584)
Q Consensus 160 l~~~~~~a~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 236 (584)
+ ...+. ..+..+. +++... |-.+++.....+..+++..+...+....-|...++..+++.+.+
T Consensus 91 l---~IGP~~aiPRtaav-----------sfEm~i~p~~~~~~~~~~ifs~iFF~i~~~l~l~p~klvd~iGK~LTP~LL 156 (439)
T PRK15433 91 L---AVGPLFATPRTATV-----------SFEVGIAPLTGDSALPLFIYSLVYFAIVILVSLYPGKLLDTVGNFLAPLKI 156 (439)
T ss_pred H---HHhhccccCCcccc-----------chhheeeccCCcccHHHHHHHHHHHHHHHHHHcChhhHHHHhHHHHHHHHH
Confidence 1 11111 1111111 111111 11111100122566677777788888888999999999999999
Q ss_pred HHHHHHHHHhhcccccCC--CC-CCCCCch-hHHHHHH----HHHHHhhchhhhhhhhcccccCCCCCchhHH----HHH
Q 007943 237 VILIFILITGLTQANTAN--YA-IFAPNGV-RGILKAS----AVLFFAYVGFDGVATLGEEVKNPGRDIPIGL----IGS 304 (584)
Q Consensus 237 ~~~~~~~i~~~~~~~~~~--~~-~~~~~g~-~~~~~~~----~~~~~~~~G~e~~~~~a~E~k~p~r~~p~ai----~~~ 304 (584)
+.++++++.++.+...+. .+ .+..+.+ .++..|- ..+...|...-.-+--....||+ |++.|.. ..+
T Consensus 157 ~~l~~lii~~i~~p~g~~~~~~~~y~~~~f~~Gf~eGY~TMDalaal~Fg~iii~~i~~~G~~~~-~~~~k~t~~ag~ia 235 (439)
T PRK15433 157 IALVILSVAAIVWPAGSISTATEAYQNAAFSNGFVNGYLTMDTLGAMVFGIVIVNAARSRGVTEA-RLLTRYTVWAGLMA 235 (439)
T ss_pred HHHHHHHHHHHhcCCCCCCCcchhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHHH
Confidence 999888888877532111 10 1111111 1121111 11222232222222223335553 3334433 444
Q ss_pred HHHHHHHHHHHHHHHHhccC-CCCC-CCCChHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCC
Q 007943 305 MVITITVYCVLSATLCLMQP-YSQI-DVDAPFTLAFQAVGMNWAKYIVALGALKGMTTVLLANVIGQARYFTHIGRTHMA 382 (584)
Q Consensus 305 ~~~~~i~y~l~~~~~~~~~~-~~~~-~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~ardg~l 382 (584)
.+...++|....+.-....+ .++. +..+-........-+++...++.+...++++++..+..++.++.....-
T Consensus 236 ~~~L~~vY~gL~~lGa~s~~~~~~~~~g~~il~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~----- 310 (439)
T PRK15433 236 GVGLTLLYLALFRLGSDSASLVDQSANGAAILHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQYV----- 310 (439)
T ss_pred HHHHHHHHHHHHHHhcCCcccccCCCcHhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----
Confidence 44444555554444322211 1111 1122223334455558899999999999999999999999888865421
Q ss_pred chhhhcccCccccchH-HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHH
Q 007943 383 PPFLAAINGKTGTPVN-ATVVMSLANSVVAFFTSLDVLANLLSISTLFIF 431 (584)
Q Consensus 383 P~~~~~~~~~~~~P~~-ai~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 431 (584)
| .|+. .+++..+++..+.- ..++.+.++..-...+.|
T Consensus 311 ~-----------isY~~~v~i~~l~S~~lSn-~G~~~II~~s~PiL~~iY 348 (439)
T PRK15433 311 P-----------LSYRTLVFILGGFSMVVSN-LGLSQLIQISVPVLTAIY 348 (439)
T ss_pred C-----------CcHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHh
Confidence 1 3322 22333333333332 345667776665555555
No 91
>PLN00149 potassium transporter; Provisional
Probab=97.45 E-value=0.048 Score=59.98 Aligned_cols=280 Identities=13% Similarity=0.086 Sum_probs=136.8
Q ss_pred hHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHhh---cccccCCCCCCCCC---------chhHHHHHHH
Q 007943 204 PIAVIVSFFVCVGACLSMKGSSRFNSVATIVHIVILIFILITGL---TQANTANYAIFAPN---------GVRGILKASA 271 (584)
Q Consensus 204 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~---~~~~~~~~~~~~~~---------g~~~~~~~~~ 271 (584)
.+++++++.+..+.-+|....+ ..++.+.++-++.+...|+ .+.+++-+..++|. +.. -+..+.
T Consensus 200 ~is~~ILv~LF~~Q~~GT~kvg---~~FgPIml~Wf~~i~~iGiyni~~~~p~Vl~AlnP~y~~~f~~~~~~~-g~~~LG 275 (779)
T PLN00149 200 PVACIILIGLFALQHYGTHRVG---FLFAPVVLTWLLCISAIGVYNIFHWNPHVYQALSPYYMYKFLKKTQRG-GWMSLG 275 (779)
T ss_pred HHHHHHHHHHHHHhccccHHHh---hhhhhHHHHHHHHHHHHHHHHHHhcCHhHhhhcCHHHHHHHHHHCCCc-eeEeec
Confidence 4677777777777777865554 4455555554444444444 44455555555552 111 223455
Q ss_pred HHHHhhchhhhhhhhcccccCCCCCchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHhCchHHHHHHH
Q 007943 272 VLFFAYVGFDGVATLGEEVKNPGRDIPIGLIGSMVITITVYCVLSATLCLMQPYSQIDVDAPFTLAFQAVGMNWAKYIVA 351 (584)
Q Consensus 272 ~~~~~~~G~e~~~~~a~E~k~p~r~~p~ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~ 351 (584)
.++.+.+|-|+.-. +-=.-.+|.+..|-..-+.=+.++--+..-++...-|...-+.++|+... ..+++.+-+.
T Consensus 276 gV~L~iTG~EALyA--DlGHF~~~~Ir~aw~~~V~P~L~L~Y~GQaA~l~~~p~~~~~~~~pFy~~----iP~~~~~P~~ 349 (779)
T PLN00149 276 GILLCITGSEAMFA--DLGHFSQLSIKIAFTSLVYPSLILAYMGQAAYLSKHHVIESDYRIGFYVS----VPEKLRWPVL 349 (779)
T ss_pred chhhcccchhhhhh--cccCCCccceeeeehhhHHHHHHHHhhhHHHHHhcCcchhccccCcHHHh----CCchhHHHHH
Confidence 66788999996433 32233455555544432222222222233333332222111223465533 3334444444
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCch-hhhcccCccc----cchHHHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q 007943 352 LGALKGMTTVLLANVIGQARYFTHIGRTHMAPP-FLAAINGKTG----TPVNATVVMSLANSVVAFFTSLDVLANLLSIS 426 (584)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~sR~l~~~ardg~lP~-~~~~~~~~~~----~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~ 426 (584)
+.+.++..-+..+...++=-+....-+-|.+|+ ..-+.+++.. .|...-+++....++...+.+-+.+.+..+++
T Consensus 350 vlAtlAaIIASQA~ISg~FSii~Qa~~Lg~fPrvkIvhTS~~~~GQIYIP~vNw~Lmv~~i~vv~~F~~s~~l~~AYGiA 429 (779)
T PLN00149 350 VIAILAAVVGSQAIITGTFSIIKQCSALGCFPKVKIVHTSSKIHGQIYIPEINWTLMLLCLAVTVGFRDTKRLGNASGLA 429 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCcccCCceeeHHHHHHHHHHHHhheeEecChHHHHHHhhhh
Confidence 444444443444444444444445556789994 2444443322 46444333333333333345667788877777
Q ss_pred HHHHHHHHHHHH-HhhhhhcCCCCCccchhHHHHHHHH----HHHHHhHhhhhccccCCCcchhhHHHHHHHHHHHHHh
Q 007943 427 TLFIFSLVALAL-LVRRYYVAGETSECDQKKLIVFLAL----IISSSIASSAYWATSDNGWIGYIVTVPVWFLATMGLQ 500 (584)
Q Consensus 427 ~~~~~~~~~~~~-i~~r~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (584)
.....++..+-+ ++.+..++ +..++..+.. .+=...+.+...-....+|+++.+.+++..+.....+
T Consensus 430 V~~vM~iTT~L~~lv~~~~W~-------~~~~~~~~f~~~f~~ie~~f~sa~l~Ki~~GGW~pl~ia~v~~~iM~~W~~ 501 (779)
T PLN00149 430 VITVMLVTTCLMSLVIVLCWH-------KSVLLAICFIFFFGTIEALYFSASLIKFLEGAWVPIALSFIFLLVMYVWHY 501 (779)
T ss_pred hehHHHHHHHHHHHHHHHHcC-------ccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 766665554322 22322211 1112222222 2223334444555566888888777776666655544
No 92
>PLN00150 potassium ion transporter family protein; Provisional
Probab=97.43 E-value=0.056 Score=59.35 Aligned_cols=279 Identities=12% Similarity=0.119 Sum_probs=136.3
Q ss_pred chhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHhhc---ccccCCCCCCCCC---------chhHHHHH
Q 007943 202 LDPIAVIVSFFVCVGACLSMKGSSRFNSVATIVHIVILIFILITGLT---QANTANYAIFAPN---------GVRGILKA 269 (584)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~~~~~~~~~~---------g~~~~~~~ 269 (584)
...+++++++.+..+.-+|....++ .++.+.++-++.+...|+. +.+++-+..++|. +.. -+..
T Consensus 214 Vv~is~~ILv~LF~iQ~~GT~kVg~---~FgPIm~~Wf~~i~~iGiyni~~~~p~Vl~AlnP~y~~~ff~~~~~~-g~~~ 289 (779)
T PLN00150 214 VTIISCVILVILFSLQRFGTHKVSF---LFAPIFLCWFFSLALIGCYNIIKWDKSVFLAFNPLYIVSFFIRNGRQ-GWES 289 (779)
T ss_pred ehhhHHHHHHHHHHHHhccchhhhh---hhccHHHHHHHHHHHHHHHHHHhcCHHHHhhcCHHHHHHHHHhCCCc-eEEE
Confidence 3456777777777777788655554 4455544444444444444 4445544444442 221 2224
Q ss_pred HHHHHHhhchhhhhhhhcccccCCCCCchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHhCchHHHHH
Q 007943 270 SAVLFFAYVGFDGVATLGEEVKNPGRDIPIGLIGSMVITITVYCVLSATLCLMQPYSQIDVDAPFTLAFQAVGMNWAKYI 349 (584)
Q Consensus 270 ~~~~~~~~~G~e~~~~~a~E~k~p~r~~p~ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~ 349 (584)
+..++.+.+|-|+.- |+-=+-.+|.+..|-..-+.=+.++--+..-++...-| + +.++|+... ..+++.+-
T Consensus 290 LG~V~L~iTGaEALy--ADlGHFg~~~Iriaw~~~V~P~LlL~Y~GQaA~ll~~p-~--~~~npFf~~----iP~~~~~P 360 (779)
T PLN00150 290 LGGIVLCMTGTEAMF--ADLGHFTVKSMQIAFTSLVYPCLLLTYLGQAAYLVKHM-E--DVNDPFYRS----LPKPIYWP 360 (779)
T ss_pred ecceeeeecchhhhh--ccccCCCccceeeeehhhHHHHHHHHHcchHHHHhcCc-c--cccCcHHHh----CCchhHHH
Confidence 555678889999643 33223345555544442222222222222223222222 1 234565533 23344444
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCch-hhhcccCccc----cchHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 007943 350 VALGALKGMTTVLLANVIGQARYFTHIGRTHMAPP-FLAAINGKTG----TPVNATVVMSLANSVVAFFTSLDVLANLLS 424 (584)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~sR~l~~~ardg~lP~-~~~~~~~~~~----~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~ 424 (584)
+.+.+.++..-+..+...++=-+....-+-|.+|+ ..-+.+++.. .|...-++.....++...+.+-+.+.+..+
T Consensus 361 ~~vlAtlAtIIASQA~ISg~FSi~~Qai~Lg~fPrvkI~hTS~~~~GQIYIP~vNw~Lmv~~i~vv~~F~~s~~l~~AYG 440 (779)
T PLN00150 361 IFVLATCSAMIASQAMISATFSIVKQAMALGCFPRVKIVHTSNKVHGQVYIPEINWILMVLCLVITAGFRDTDEIGNAYG 440 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCcccCCceeeHHHHHHHHHHHHhheEEecChHHHHHHhh
Confidence 44444444444444444444444555556789994 2444443332 465443333333333333456777888777
Q ss_pred HHHHHHHHHHHHHH-HhhhhhcCCCCCccchhHHHHHHHH----HHHHHhHhhhhccccCCCcchhhHHHHHHHHHHHHH
Q 007943 425 ISTLFIFSLVALAL-LVRRYYVAGETSECDQKKLIVFLAL----IISSSIASSAYWATSDNGWIGYIVTVPVWFLATMGL 499 (584)
Q Consensus 425 ~~~~~~~~~~~~~~-i~~r~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (584)
++.....++..+-. ++.+..++ +..+...+.. .+=...+.+...-....+|+++.+.+++..+.....
T Consensus 441 iAV~~vM~iTT~L~~~v~~~~W~-------~~~~~~~~f~~~f~~ie~~f~sa~l~Ki~~GGW~pl~ia~v~~~iM~~W~ 513 (779)
T PLN00150 441 IAVVGVMIITTCLMTLVMIIIWR-------KHILLALLFFTVFAIIEGIYFSAVLFKVTQGGWVPLVIAAVFGTVMYTWH 513 (779)
T ss_pred hheehhhHHHHHHHHHHHHHHcC-------ccHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcHHHHHHHHHHHHHHHHH
Confidence 77766665554322 22222211 1112222222 222333444444555688888877777666665544
Q ss_pred h
Q 007943 500 Q 500 (584)
Q Consensus 500 ~ 500 (584)
+
T Consensus 514 ~ 514 (779)
T PLN00150 514 Y 514 (779)
T ss_pred H
Confidence 4
No 93
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=97.35 E-value=0.22 Score=50.57 Aligned_cols=314 Identities=16% Similarity=0.174 Sum_probs=154.5
Q ss_pred HHHHHHhhhhhhHHccHHhHhhccCch---HHHHHHHHHHHHHHHHHHHHhhhhccccCCchhhhHHHHhchHHHHHHHH
Q 007943 80 WFGIGAVMGAGIFVLTGEAARNFAGPA---VIISYLISGISALLSVLCYTEFSVELPVAGGSFAYLRVELGDFVAYIAAG 156 (584)
Q Consensus 80 ~~~~~~~ig~gi~~~~~~~~~~~~G~~---~~~~~ii~~l~~~~~~~~~~el~~~~P~~Gg~y~~~~~~~g~~~g~~~g~ 156 (584)
++.++.-.|+|=...|...=. .+|.. +.+++++.++..=..+..- .-..||.++=..+..||+.|.+..-
T Consensus 12 fmLFalFFGAGNlIFPP~LG~-~aG~~~~~A~lGFllTgVglPlLgiIa------~a~~g~~~~~l~~~i~~~fg~~f~~ 84 (431)
T COG1114 12 FMLFALFFGAGNLIFPPMLGL-HAGEHVWPAILGFLLTGVGLPLLGIIA------VALYGGGVESLATRIGPWFGVLFAI 84 (431)
T ss_pred HHHHHHHhcCCCccCChhhhh-hcCccHHHHHHHHHHHHhhHHHHHHHH------hhccCCCHHHHhhhccchHHHHHHH
Confidence 444455567776655554433 37764 5566666665533322222 1234555555555677877766543
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHccCCCCCcceecccccc-ccCcchhHHHHHHHHHHHHHhccchhHHHHHHHHHH
Q 007943 157 NILFEYVVSGASV--ARSWTSYFATLCNHDPGSFRIHVSSVAE-DYSHLDPIAVIVSFFVCVGACLSMKGSSRFNSVATI 233 (584)
Q Consensus 157 ~~~l~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 233 (584)
...+ ...+.. .+..+......+. |...+ +.....+..++...+...+.+..-|...++..+++.
T Consensus 85 ~iyL---sIGPffAiPRt~~vsfe~~i~----------p~~~~~~~~~l~ifs~ifF~ia~~~sl~psklid~vGk~LTP 151 (431)
T COG1114 85 AIYL---SIGPFFAIPRTGAVSFEVGIS----------PLLGDSSLPSLFIFSVIFFAIAYLFSLNPSKLIDRVGKFLTP 151 (431)
T ss_pred HHHH---HhcccccCCcccchhHHHhhh----------cccCCCcchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhH
Confidence 2221 111111 1111111111010 00111 111133566677777788888888999999999999
Q ss_pred HHHHHHHHHHHHhhcccccCCC--C-CCCC----Cch-hHHHHHHHHHHHhhchhhhhhhhcccccCCCCCchhHHHHHH
Q 007943 234 VHIVILIFILITGLTQANTANY--A-IFAP----NGV-RGILKASAVLFFAYVGFDGVATLGEEVKNPGRDIPIGLIGSM 305 (584)
Q Consensus 234 ~~~~~~~~~~i~~~~~~~~~~~--~-~~~~----~g~-~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~r~~p~ai~~~~ 305 (584)
++++.++++.+..+...+.+.. + ...+ .|+ .+..+.=..+..+|...-.-+.-....+++ |+..|-.+.+-
T Consensus 152 ilLv~l~il~i~~~~~p~g~~~~a~~~y~~~pf~~GfleGY~TMDaLAal~FgivIv~alk~~g~~~~-~~~~~~~~~ag 230 (431)
T COG1114 152 ILLVLLLILVIAAIIPPAGPISAASGAYQSQPFSKGFLEGYLTMDALAALAFGIVIVNALKSKGVTTK-KQIIKYTIKAG 230 (431)
T ss_pred HHHHHHHHHHHHHHhCCCCCcccccHHHHhChHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhccCcH-HHHHHHHHHHH
Confidence 9999988888876664332211 1 1111 121 122222223344444443333333333443 33444444433
Q ss_pred HHHH----HHHHHHHHHHHhccCCCCCCC-C---ChHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 007943 306 VITI----TVYCVLSATLCLMQPYSQIDV-D---APFTLAFQAVGMNWAKYIVALGALKGMTTVLLANVIGQARYFTHIG 377 (584)
Q Consensus 306 ~~~~----i~y~l~~~~~~~~~~~~~~~~-~---~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a 377 (584)
++.. .+|....+ .+....+.... + +-+....+..-++....++.++..++|+++..+...+++....
T Consensus 231 lIa~i~La~iY~~L~y--lGa~s~~~~~~~~nG~~IL~~~s~~~fG~~G~~lL~~iv~lACLTTaiGLi~a~aefF~--- 305 (431)
T COG1114 231 LIAAILLALIYLSLFY--LGATSASAAGLAANGGQILSAYSQHLFGSYGSILLGLIVFLACLTTAVGLIVACAEFFS--- 305 (431)
T ss_pred HHHHHHHHHHHHHHHH--hccchHhhcccccchHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 3333 33332222 22222221111 1 2233444455567788888888899999998888888776643
Q ss_pred hcCCCchhhhcccCccccchHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHH
Q 007943 378 RTHMAPPFLAAINGKTGTPVNATVVMSLANSVVAFFTSLDVLANLLSISTLFIF 431 (584)
Q Consensus 378 rdg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 431 (584)
|+-||-.-..++++ ..+++.++ ....++.+..++.-...+.|
T Consensus 306 ----------~~~p~~SY~~~v~i-f~i~sflv-an~GL~~Ii~isvPvL~~iY 347 (431)
T COG1114 306 ----------KLVPKLSYKTWVII-FTLISFLV-ANLGLEQIIKISVPVLTAIY 347 (431)
T ss_pred ----------HhcccccHHHHHHH-HHHHHHHH-HHhhHHHHHHHHHHHHHHHh
Confidence 33332222223322 23333222 22356777777766666666
No 94
>TIGR00794 kup potassium uptake protein. Proteins of the KUP family include the KUP (TrkD) protein of E. coli, a partially sequenced ORF from Lactococcus lactis, high affinity K+ uptake systems (Hak1) of the yeast Debaryomyces occidentalis as well as the fungus, Neurospora crassa, and several homologues in plants. While the E. coli KUP protein is assumed to be a secondary transporter, and uptake is blocked by protonophores such as CCCP (but not arsenate), the energy coupling mechanism has not been defined. However, the N. crassa protein has been shown to be a K+:H+ symporter, establishing that the KUP family consists of secondary carriers. The plant high affinity (20mM) K+ transporter can complement K+ uptake defects in E. coli.
Probab=97.33 E-value=0.046 Score=59.54 Aligned_cols=222 Identities=15% Similarity=0.143 Sum_probs=112.6
Q ss_pred chhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHhhc---ccccCCCCCCCCC---------chhHHHHH
Q 007943 202 LDPIAVIVSFFVCVGACLSMKGSSRFNSVATIVHIVILIFILITGLT---QANTANYAIFAPN---------GVRGILKA 269 (584)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~~~~~~~~~~---------g~~~~~~~ 269 (584)
...+++++++.+..+.-+|....++ .++.+.++-++.+.+.|+. +-+++-+..++|. +..+ +..
T Consensus 168 Vv~it~~ILv~LF~iQ~~GT~kvg~---~FgPim~vWF~~l~~~Gi~~I~~~~P~Vl~AlnP~ya~~f~~~~~~~~-~~~ 243 (688)
T TIGR00794 168 VVPISCIILVLLFLIQRFGTAKVGF---TFAPIILVWLLLLAGIGIYNIVKFNPEVLKALSPYYAVQFFIEYGTVG-WVS 243 (688)
T ss_pred ehhHHHHHHHHHHHHhccccHHHhh---hhhhHHHHHHHHHHHHHHHHHHhcCHHHHhHhCHHHHHHHHHHCCCce-eee
Confidence 3456777777777777778655554 4555555544444444444 3244444444442 2222 224
Q ss_pred HHHHHHhhchhhhhhhhcccccCCCCCchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHhCchHHHHH
Q 007943 270 SAVLFFAYVGFDGVATLGEEVKNPGRDIPIGLIGSMVITITVYCVLSATLCLMQPYSQIDVDAPFTLAFQAVGMNWAKYI 349 (584)
Q Consensus 270 ~~~~~~~~~G~e~~~~~a~E~k~p~r~~p~ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~ 349 (584)
+..++.+.+|-|+-- |+-=+-.+|.+..|-..-+.-+.++.-+..-+....-| + ...+|+... ..+|+.+-
T Consensus 244 LG~V~L~iTGaEALy--ADmGHFg~~~Ir~aw~~~V~P~L~LnY~GQgA~ll~~p-~--~~~NpFf~~----~P~~~~~p 314 (688)
T TIGR00794 244 LGGVVLSITGVEAMF--ADLGHFGKLPIQLAWFTFVYPSLILCYIGQAAYLSKHP-E--AIKNPFFLS----IPDWALWP 314 (688)
T ss_pred ccchhheeccHhhhh--cccCCCCcccceeehHHHHHHHHHHHHcchHHHHhcCc-c--hhcCcHHHh----CchHHHHH
Confidence 556778899999643 22223345555444432222222222222222222222 1 125676544 33455555
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCch-hhhcccCccc----cchHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 007943 350 VALGALKGMTTVLLANVIGQARYFTHIGRTHMAPP-FLAAINGKTG----TPVNATVVMSLANSVVAFFTSLDVLANLLS 424 (584)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~sR~l~~~ardg~lP~-~~~~~~~~~~----~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~ 424 (584)
+.+.+.++..-+..+...++=-+....-+-|.+|+ ...+.+++.+ .|...-+++.....+...+.+-+.+.+..+
T Consensus 315 ~~vlAtlAtIIASQA~IsG~FSl~~Qai~Lg~~Pr~~I~hTS~~~~GQIYiP~vNw~Lmv~~i~vvl~F~~S~~la~AYG 394 (688)
T TIGR00794 315 LFIIATLAAIIASQAVISGVFSITSQAVRLGCFPRVKIIHTSEKYHGQIYIPFVNWLLMLGVIAVTAGFRDTNNLGAAYG 394 (688)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccCCceeeHHHHHHHHHHHHheeEEecChHHHHHHhh
Confidence 55554444444444555555455555567789994 3444443322 465444433333333344456677888877
Q ss_pred HHHHHHHHHHHH
Q 007943 425 ISTLFIFSLVAL 436 (584)
Q Consensus 425 ~~~~~~~~~~~~ 436 (584)
++....+++..+
T Consensus 395 iaVt~tM~iTT~ 406 (688)
T TIGR00794 395 IAVTGTFLVTTC 406 (688)
T ss_pred hhhhhhhHHHHH
Confidence 777766666654
No 95
>PLN00148 potassium transporter; Provisional
Probab=97.25 E-value=0.055 Score=59.48 Aligned_cols=279 Identities=12% Similarity=0.084 Sum_probs=136.1
Q ss_pred chhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHh---hcccccCCCCCCCCC---------chhHHHHH
Q 007943 202 LDPIAVIVSFFVCVGACLSMKGSSRFNSVATIVHIVILIFILITG---LTQANTANYAIFAPN---------GVRGILKA 269 (584)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~~~~~~~~~~~~~---------g~~~~~~~ 269 (584)
...+++++++.+..+.-+|....++ .++.+.++-++.+..+| +.+.+++-+..++|. +..+ +..
T Consensus 197 vv~is~~ILv~LF~vQ~~GT~kVg~---~FgPIm~lWf~~i~~iGiyni~~~~p~Vl~AlnP~y~~~ff~~~~~~g-~~~ 272 (785)
T PLN00148 197 LVLLACVILVGLFALQHCGTHRVAF---MFAPIVIIWLLSIGSIGLYNIIHWNPKIIHALSPYYIIKFFRVTGKDG-WIS 272 (785)
T ss_pred ehhHHHHHHHHHHHHhccccHHHHh---hhhhHHHHHHHHHHHHHHHHHHhcCHHHhhhcCHHHHHHHHHhCCCce-EEe
Confidence 3456777777777777778655554 44444444444444444 444455545555442 2211 224
Q ss_pred HHHHHHhhchhhhhhhhcccccCCCCCchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHhCchHHHHH
Q 007943 270 SAVLFFAYVGFDGVATLGEEVKNPGRDIPIGLIGSMVITITVYCVLSATLCLMQPYSQIDVDAPFTLAFQAVGMNWAKYI 349 (584)
Q Consensus 270 ~~~~~~~~~G~e~~~~~a~E~k~p~r~~p~ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~ 349 (584)
+..++.+.+|-|+.-. +-=.-.+|.+.+|-..-+.=+.++--+..-++...-| + +.++|+... -.+++.+-
T Consensus 273 LGgV~L~iTGaEALyA--DlGHFg~~~Iriaw~~~V~P~L~L~Y~GQaA~ll~~p-~--~~~npFf~~----iP~~~~~P 343 (785)
T PLN00148 273 LGGILLSITGTEAMFA--DLGHFTAASIRLAFATVIYPCLVVQYMGQAAFLSKNI-P--SIPNSFYDS----IPDPVFWP 343 (785)
T ss_pred ecchheeccchhhhhh--hccCCCccceEEeeeehHHHHHHHHHcchHHHHhcCc-c--cccCcHHHh----CCchhHHH
Confidence 5556788899996433 2223345555554433222222222223333332222 1 224565543 22344444
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCch-hhhcccCccc----cchHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 007943 350 VALGALKGMTTVLLANVIGQARYFTHIGRTHMAPP-FLAAINGKTG----TPVNATVVMSLANSVVAFFTSLDVLANLLS 424 (584)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~sR~l~~~ardg~lP~-~~~~~~~~~~----~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~ 424 (584)
+.+.+.++..-+..+...++=-+....-+-|.+|+ ..-+.+++.. .|...-+++....++...+.+-+.+.+..+
T Consensus 344 ~~vlAtlAtIIASQA~ISg~FSi~~Qai~Lg~fPrvkIvhTS~~~~GQIYIP~vNw~Lmv~~i~vv~~F~~s~~la~AYG 423 (785)
T PLN00148 344 VFVIATLAAIVGSQAVITATFSIVKQCHALGCFPRVKVVHTSKHIYGQIYIPEINWILMILTLAVTIGFRDTTLIGNAYG 423 (785)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccCCceeeHHHHHHHHHHHHHhheeeccchhHHHhhh
Confidence 44444444443434444444444444556789994 3444443322 565544433333333444456677777777
Q ss_pred HHHHHHHHHHHHHH-HhhhhhcCCCCCccchhHHHHHHH----HHHHHHhHhhhhccccCCCcchhhHHHHHHHHHHHHH
Q 007943 425 ISTLFIFSLVALAL-LVRRYYVAGETSECDQKKLIVFLA----LIISSSIASSAYWATSDNGWIGYIVTVPVWFLATMGL 499 (584)
Q Consensus 425 ~~~~~~~~~~~~~~-i~~r~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (584)
++.....++..+-. ++.+..++ +..+...+. ..+=...+.+...-....+|+++.+.+++..+.....
T Consensus 424 iAV~~vM~iTT~L~~lV~~~~W~-------~~~~~~~~f~~~F~~ie~~f~sa~l~Ki~~GGW~pl~ia~v~~~iM~~W~ 496 (785)
T PLN00148 424 LACMTVMFITTFLMALVIIFVWQ-------KSIILAALFLLFFGFIEGVYLSAALMKVPQGGWVPLVLSAIFMSIMYIWH 496 (785)
T ss_pred hheeeHHHHHHHHHHHHHHHHhC-------ccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH
Confidence 76665555554322 22222211 111222222 2222333444444555688888877777666665544
Q ss_pred h
Q 007943 500 Q 500 (584)
Q Consensus 500 ~ 500 (584)
+
T Consensus 497 ~ 497 (785)
T PLN00148 497 Y 497 (785)
T ss_pred H
Confidence 4
No 96
>PRK10745 trkD potassium transport protein Kup; Provisional
Probab=97.10 E-value=0.47 Score=51.11 Aligned_cols=222 Identities=14% Similarity=0.159 Sum_probs=109.6
Q ss_pred chhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHhhccc--ccCCCCCCCCC---------chhHHHHHH
Q 007943 202 LDPIAVIVSFFVCVGACLSMKGSSRFNSVATIVHIVILIFILITGLTQA--NTANYAIFAPN---------GVRGILKAS 270 (584)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~---------g~~~~~~~~ 270 (584)
...+++++++.+..+.-+|....++ .++.++++=++.+.+.|+... +++-+..++|. +..+ +..+
T Consensus 143 Vvpit~~ILv~LF~iQ~~GT~~vG~---~FgPIm~vWF~~i~~~Gi~~I~~~P~Vl~AlnP~ya~~f~~~~~~~g-f~~L 218 (622)
T PRK10745 143 IVPLSIIVLTLLFMIQKHGTGMVGK---LFAPIMLTWFLTLAVLGLRSIIANPEVLHALNPMWAVHFFLEYKTVS-FFAL 218 (622)
T ss_pred cHHHHHHHHHHHHHHhccccHHHhh---hhhhHHHHHHHHHHHHHHHHHhcCHHHHhHhCHHHHHHHHHhCCCce-EEEe
Confidence 3456667777777777778655554 455555555544444444432 33333334332 2211 2234
Q ss_pred HHHHHhhchhhhhhhhcccccCCCCCchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHhCchHHHHHH
Q 007943 271 AVLFFAYVGFDGVATLGEEVKNPGRDIPIGLIGSMVITITVYCVLSATLCLMQPYSQIDVDAPFTLAFQAVGMNWAKYIV 350 (584)
Q Consensus 271 ~~~~~~~~G~e~~~~~a~E~k~p~r~~p~ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~ 350 (584)
..++.+.+|-|+-- |+-=+-.+|.+.++-..-..=+.++.-+..-+....-| + ..++|+... ..+++.+-+
T Consensus 219 G~V~L~vTGaEALY--ADmGHFG~~~Ir~aW~~~v~P~L~LnY~GQgA~ll~~p-~--~~~NpFf~~----~P~~~~~p~ 289 (622)
T PRK10745 219 GAVVLAITGVEALY--ADMGHFGKFPIRLAWFTVVLPSLVLNYFGQGALLLKNP-E--AIKNPFFLL----APDWALIPL 289 (622)
T ss_pred cceeeeccchHHHh--hccCCCCccceeeeehhhHHHHHHHHhcchHHHHhcCc-h--hhcCcHHHh----CChhHHHHH
Confidence 55678888999643 33333345666555443332222222222222222212 1 225676644 334555544
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCch-hhhcccCcc--c--cchHHHHHHHHHHHHHHHhhcHHHHHHHHHH
Q 007943 351 ALGALKGMTTVLLANVIGQARYFTHIGRTHMAPP-FLAAINGKT--G--TPVNATVVMSLANSVVAFFTSLDVLANLLSI 425 (584)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~sR~l~~~ardg~lP~-~~~~~~~~~--~--~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~~ 425 (584)
.+.+.++..-+..+...++=-+....-+-|.+|+ ...+.+++. + .|...-++......+...+.+-+.+.+..++
T Consensus 290 viLATlAtIIASQAvISGaFSl~~QAi~Lg~~Prl~I~hTS~~~~GQIYIP~vNw~Lmv~~i~~vl~F~sS~~La~AYGi 369 (622)
T PRK10745 290 LILATLATVIASQAVISGVFSLTRQAVRLGYLPPMRIIHTSEMESGQIYIPFVNWLLYVAVVIVIVSFEHSSNLAAAYGI 369 (622)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCCCCceEEeCCCccCCceeeHHHHHHHHHHHHeeEEEecCchHHHHHhhh
Confidence 4444444444444444444455555557789994 344444332 2 4644433333333333334566777777777
Q ss_pred HHHHHHHHHHH
Q 007943 426 STLFIFSLVAL 436 (584)
Q Consensus 426 ~~~~~~~~~~~ 436 (584)
+......+..+
T Consensus 370 AVt~tM~iTT~ 380 (622)
T PRK10745 370 AVTGTMVLTSI 380 (622)
T ss_pred hheeHhHHHHH
Confidence 76666655544
No 97
>PRK09950 putative transporter; Provisional
Probab=96.81 E-value=0.94 Score=48.29 Aligned_cols=115 Identities=15% Similarity=0.063 Sum_probs=58.2
Q ss_pred ccccCHHHHHHHHHHHhhhhhhHHc-cHHhHh--------hccCc--------------hHHHHHHHHHHHHHHHHH-HH
Q 007943 70 KKNLNWWDLIWFGIGAVMGAGIFVL-TGEAAR--------NFAGP--------------AVIISYLISGISALLSVL-CY 125 (584)
Q Consensus 70 ~r~l~~~~~~~~~~~~~ig~gi~~~-~~~~~~--------~~~G~--------------~~~~~~ii~~l~~~~~~~-~~ 125 (584)
|.++|.++-+++.++.-+|.|+... ...-+. ..++. ..+-+|.+-++..+..++ .+
T Consensus 81 kPefS~~sW~aMlf~aG~G~gllfwgvaEP~~h~~~Pp~g~e~~s~~A~~~A~~~t~fHWG~~aWaiY~l~~l~iaY~~~ 160 (506)
T PRK09950 81 KPEYSTLSWLFMFICAGLGSSTLYWGVMEWAYYYQTPGLNIAPRSPKALEYSVSYSFFHWGISAWATYALASLIMAYHFH 160 (506)
T ss_pred CCCccchhHHHHHHHHhhhhHHHHHhhHhHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999988886532 110000 00111 123455555666666666 33
Q ss_pred HhhhhccccCCchhhhH----HHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 007943 126 TEFSVELPVAGGSFAYL----RVELGDFVAYIAAGNILFEYVVSGASVARSWTSYFATLCNHD 184 (584)
Q Consensus 126 ~el~~~~P~~Gg~y~~~----~~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~ 184 (584)
.+-.....-+...+... +..+|+..-.++-.....+-..+........+.-++.+++.+
T Consensus 161 ~rk~~pl~iss~~~pllG~~~~g~~G~~IDil~v~atv~GvatSLGlg~~qi~~gl~~l~Gi~ 223 (506)
T PRK09950 161 VRKNKGLSLSGIIAAITGVKPQGPWGRLVDLMFLIATVGALTISLVVTAATFTRGLSALTGLP 223 (506)
T ss_pred hhcCCCCchHHhhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCCC
Confidence 22222111111222222 223344444444444455555555556666666677776653
No 98
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=96.74 E-value=1.2 Score=48.42 Aligned_cols=97 Identities=19% Similarity=0.226 Sum_probs=54.0
Q ss_pred HhccchhHHHHHHHHHHHHHHHHHHHHHHhhcc-cccC--------CCCCCCCCchhHHHHHHHHHHHhhc-hhhhhhhh
Q 007943 217 ACLSMKGSSRFNSVATIVHIVILIFILITGLTQ-ANTA--------NYAIFAPNGVRGILKASAVLFFAYV-GFDGVATL 286 (584)
Q Consensus 217 ~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~--------~~~~~~~~g~~~~~~~~~~~~~~~~-G~e~~~~~ 286 (584)
...|+|..+|+......+-.+.++++.+-++.. +..+ ++..+. ...-+..+...++|+.. |+.....+
T Consensus 195 i~kGi~~~~kv~~~~~~~p~v~l~il~ir~ltl~ga~~Gl~~~~~pd~~~l~--~~~vW~~A~~Q~ffsl~ig~G~~it~ 272 (523)
T PF00209_consen 195 IWKGIESIGKVMYPTLLLPFVLLIILLIRSLTLPGASEGLKFLFTPDWSKLL--DPKVWIAALGQVFFSLSIGFGIMITY 272 (523)
T ss_dssp TTTTHHHHHHHHHHHHH---HHHHHHHHHHHT-EEHHHHHHHHHSB-TTGTT--SHHHHHHHHHHHHHHTTTTSSHHHHH
T ss_pred eEeccccccchhhhhhhhhhEEEEEEEEEEEcCCCCCCceEEEecCCcchhh--HHHHHHHHHHHHhhccCCCcceEEEE
Confidence 347888888877666543333333333333221 1111 111111 12346778888888886 88888888
Q ss_pred cccccCCCCCchhHHHHHHHHHHHHHHHHH
Q 007943 287 GEEVKNPGRDIPIGLIGSMVITITVYCVLS 316 (584)
Q Consensus 287 a~E~k~p~r~~p~ai~~~~~~~~i~y~l~~ 316 (584)
+.-.|+ +.|++|.............++..
T Consensus 273 ~Sy~~~-~~n~~~~a~~v~~~~~~~sllag 301 (523)
T PF00209_consen 273 GSYNKF-KNNIFRDALIVAFINTLVSLLAG 301 (523)
T ss_dssp HTTS-T-TS-SHHHHHHHHHHHHHHHHTTG
T ss_pred cCcCCC-CccccccceEEEcCchhhhHhHH
Confidence 888876 57888877766666655554443
No 99
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]
Probab=96.60 E-value=1.3 Score=46.88 Aligned_cols=105 Identities=15% Similarity=0.178 Sum_probs=56.9
Q ss_pred hHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcC-CCchhhhcccCccccchHHHHHHHHHHHHHH
Q 007943 333 PFTLAFQAVGMNWAKYIVALGALKGMTTVLLANVIGQARYFTHIGRTH-MAPPFLAAINGKTGTPVNATVVMSLANSVVA 411 (584)
Q Consensus 333 p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~ardg-~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~ 411 (584)
|-..+++....-++..+..+..++..+.-..+..-+.+-++-.++..| .-|+...|+- ++ ++.++++..+.
T Consensus 390 ~e~alf~~l~~lPl~~v~~~~~~~~i~~FfiTsaDS~s~vl~~~ss~~~~~pp~~~r~~-------W~-v~~~~ia~~lL 461 (537)
T COG1292 390 PETALFQVLSHLPLGTLTSLLALLVIAIFFVTSADSGSYVLAMISSRGGEDPPRWVRVF-------WG-VLIGLIAAVLL 461 (537)
T ss_pred hhhHHHHHHHhCCHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhccCCCCChHHHHHH-------HH-HHHHHHHHHHH
Confidence 344444444433444555555555555555667777788888877665 3333333332 33 34555555555
Q ss_pred HhhcHHHHHH---HHHHHHHHHHHHHHHHHHhhhhhc
Q 007943 412 FFTSLDVLAN---LLSISTLFIFSLVALALLVRRYYV 445 (584)
Q Consensus 412 ~~~~~~~l~~---~~~~~~~~~~~~~~~~~i~~r~~~ 445 (584)
+.+.++.+-+ +.+..+.+..++.+.++++--+++
T Consensus 462 ~~ggl~aLqt~~ii~alPF~~vll~~~~sl~k~l~~d 498 (537)
T COG1292 462 LIGGLEALQTAAIITALPFSLVLLVMMFSLIKDLKQD 498 (537)
T ss_pred HhCCHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHhh
Confidence 5555554444 444555566667777777644443
No 100
>PRK09928 choline transport protein BetT; Provisional
Probab=96.56 E-value=1.6 Score=48.06 Aligned_cols=23 Identities=13% Similarity=0.162 Sum_probs=19.1
Q ss_pred ccccCHHHHHHHHHHHhhhhhhH
Q 007943 70 KKNLNWWDLIWFGIGAVMGAGIF 92 (584)
Q Consensus 70 ~r~l~~~~~~~~~~~~~ig~gi~ 92 (584)
|.+++.++-++|.++.-+|.|+.
T Consensus 90 kPefS~~sW~aMLFaAGmGigLm 112 (679)
T PRK09928 90 KPEFSLLSWAAMLFAAGIGIDLM 112 (679)
T ss_pred CCCCCcchHHHHHHHHhhhhhhe
Confidence 56799999999999888888764
No 101
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=96.16 E-value=2 Score=44.57 Aligned_cols=241 Identities=11% Similarity=0.056 Sum_probs=127.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccCCchhhhHH-HHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC
Q 007943 107 VIISYLISGISALLSVLCYTEFSVELPVAGGSFAYLR-VELGDFVAYIAAGNILFEYVVSGASVARSWTSYFATLCNHDP 185 (584)
Q Consensus 107 ~~~~~ii~~l~~~~~~~~~~el~~~~P~~Gg~y~~~~-~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~ 185 (584)
...+|+.+.+ ...+..+|--+++-+- ..-++.. |.-.+..-.+++..-.+....+......+.+..+..+++.+.
T Consensus 79 Y~iG~~~Gy~---i~~fL~A~~LRk~Gky-T~aD~~a~Ry~~~~~R~~aa~~ti~vs~~YliaQmvGaG~li~~l~gv~~ 154 (529)
T COG4147 79 YSIGWTGGYP---ILLFLIAEYLRKLGKY-TFADFIADRYKSNPARLLAAIGTIIVSFLYLIAQMVGAGLLISLLLGVPY 154 (529)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHhcCCc-chHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCc
Confidence 3445555543 3556667766665322 2334443 444567777777777777777778888888888888887432
Q ss_pred CCcceeccccccccCcchhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHhhcccc--cCC---------
Q 007943 186 GSFRIHVSSVAEDYSHLDPIAVIVSFFVCVGACLSMKGSSRFNSVATIVHIVILIFILITGLTQAN--TAN--------- 254 (584)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~--------- 254 (584)
. ..+.++.++.......-|+|...|.|.+=.++.+...++..+....+.+ +..
T Consensus 155 ~----------------vgv~ig~ilm~~Yvv~GGM~atTW~Qi~qavlLi~a~~i~ai~i~~~~~g~~~~~~~~~~~~~ 218 (529)
T COG4147 155 H----------------VGVVIGGILMMVYVVLGGMKATTWVQIIQAVLLIVAALIMAIMIMWKLGGNPNPLFAEAVTVH 218 (529)
T ss_pred e----------------eehhhHhHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHhhcC
Confidence 1 1233334444555566788888888877776666665555544443321 110
Q ss_pred ----CCCCCCCch--hHHHHHHHHHHHhhchhhhhhhhcccc---cCCCCCchhHHHHHHHHHHHHHHHHHHHH----Hh
Q 007943 255 ----YAIFAPNGV--RGILKASAVLFFAYVGFDGVATLGEEV---KNPGRDIPIGLIGSMVITITVYCVLSATL----CL 321 (584)
Q Consensus 255 ----~~~~~~~g~--~~~~~~~~~~~~~~~G~e~~~~~a~E~---k~p~r~~p~ai~~~~~~~~i~y~l~~~~~----~~ 321 (584)
.+...+.|. ++.+..+...+--..|.-.-.|.--.. ++ -|+..|...++...++++|+..-..- ..
T Consensus 219 ~~~~~~~~~~pGl~~~~~i~~isl~~aLm~GTAgLPHil~RFfTvp~-~k~AR~Sv~wA~~fIg~fYi~~~~ig~~A~~~ 297 (529)
T COG4147 219 PKDDGSDIMEPGLLYKDPIDFISLGFALMVGTAGLPHILMRFFTVPD-AKEARKSVFWATGFIGIFYILTPIIGAGARLL 297 (529)
T ss_pred cccCcccccCCCCcccCHHHHHHHHHHHHHccCCCCeEEEEEEecCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 001111111 122222222222333555555543221 22 24556888999999999998764431 11
Q ss_pred cc--CCC------------CCCC-------CChHHHHHHHhC-chHHHHHHHHHHHHHHHHHHHHHHhh
Q 007943 322 MQ--PYS------------QIDV-------DAPFTLAFQAVG-MNWAKYIVALGALKGMTTVLLANVIG 368 (584)
Q Consensus 322 ~~--~~~------------~~~~-------~~p~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (584)
+. |.. +.+. +.....+....+ +++..-++....+.+.++..-+....
T Consensus 298 v~t~~~~~p~w~~~w~~~~D~~~~gi~~~~n~a~vlaa~~i~~g~~v~g~vsAga~AtaLstaaGL~l~ 366 (529)
T COG4147 298 VGTNPVGKPAWAAKWIKTGDANGDGIGGWTNMAAVLAAPAIGGGPWVLGFVSAGAFATALSTAAGLLLV 366 (529)
T ss_pred hccCCCCCcchhhcccccccccccccccccchHHHhhhHHhcCCceehhHHHHHHHHHHHHHHhhHHHH
Confidence 11 111 1111 123334445666 57776677766666666555444433
No 102
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional
Probab=96.10 E-value=2.5 Score=45.11 Aligned_cols=24 Identities=13% Similarity=0.214 Sum_probs=20.8
Q ss_pred ccccCHHHHHHHHHHHhhhhhhHH
Q 007943 70 KKNLNWWDLIWFGIGAVMGAGIFV 93 (584)
Q Consensus 70 ~r~l~~~~~~~~~~~~~ig~gi~~ 93 (584)
|.+++.++-+++.++.-+|.|+..
T Consensus 83 kPefs~~sW~aMlf~aG~G~gllf 106 (504)
T PRK03356 83 KPEFSTASWIFMMFASCTSAAVLF 106 (504)
T ss_pred CCCccchHHHHHHHHHhhhhhhhh
Confidence 778999999999999998888654
No 103
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=95.95 E-value=0.34 Score=49.99 Aligned_cols=308 Identities=9% Similarity=0.079 Sum_probs=146.4
Q ss_pred cccccccCHHHHHHHHHHHhhhhhhHHccHHhHhhccCch-HHHHHHHHHHHHHHHHHHHHhhhhccccCCchhhhH---
Q 007943 67 HEMKKNLNWWDLIWFGIGAVMGAGIFVLTGEAARNFAGPA-VIISYLISGISALLSVLCYTEFSVELPVAGGSFAYL--- 142 (584)
Q Consensus 67 ~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ii~~l~~~~~~~~~~el~~~~P~~Gg~y~~~--- 142 (584)
++-+|..|+|+-+..=.+..+..+.+...+..++..-.+. .+.+.+++-++.......=+ +.|..|+-.
T Consensus 50 ~~~~Rtws~~~~~~fW~~~~fnv~Tw~ia~s~l~lGLswwq~~~tv~vG~~~~~~f~~lns-------~~G~~yhIsFpv 122 (572)
T KOG2466|consen 50 PPSRRTWSWWNYIAFWLADSFNVNTWMIAGSALELGLSWWQTWITVWVGYLFTAIFLVLNS-------RPGSDYHISFPV 122 (572)
T ss_pred CcccccccHHHHHHHHHhccccccceeehhhHHhccCCHHHHHHHHHHHHHHHHHHHHHcc-------CCCcccccceee
Confidence 3457889999999888888888888877777766422222 66666666555544433332 234444442
Q ss_pred --HHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC---CCcceeccccccccCcchhHHHHHHHHHHHHH
Q 007943 143 --RVELGDFVAYIAAGNILFEYVVSGASVARSWTSYFATLCNHDP---GSFRIHVSSVAEDYSHLDPIAVIVSFFVCVGA 217 (584)
Q Consensus 143 --~~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (584)
+..||-..+-.--..-.+.-++.-..++...++.++.++..-- ......+++ .+......+...+.+++....
T Consensus 123 ~sR~sFGiygS~~pIi~R~vma~vwYg~~awiGgecV~lmL~si~~~~~hipntl~~--~~~tt~e~i~FfIFwv~s~~~ 200 (572)
T KOG2466|consen 123 LSRSSFGIYGSLWPIINRVVMACVWYGVNAWIGGECVQLMLKSIFKSFSHIPNTLGK--PGTTTYEFIGFFIFWVASLPF 200 (572)
T ss_pred eeeeehhhhHhHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHhhhhhcCccccCC--CCCchHHHHHHHHHHHHhhhe
Confidence 3344433222222223333344445555555555554433211 111001110 011112244444455544444
Q ss_pred -hccchhHHHHHHHHHHHHHHHHHHHHHHhhccccc-CCC-C-CCCCCchhHHHHHHHHHHHhhchhhhhhhhcccccCC
Q 007943 218 -CLSMKGSSRFNSVATIVHIVILIFILITGLTQANT-ANY-A-IFAPNGVRGILKASAVLFFAYVGFDGVATLGEEVKNP 293 (584)
Q Consensus 218 -~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~-~-~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p 293 (584)
.++.....++..+-.+....+.+.+.+..+.+.+. +.. . +-.+.+..-.+.-+...+.++.++.....-..+-.+=
T Consensus 201 ~~~~p~~ir~lf~~ka~~t~fA~~g~LIw~l~kAhG~G~l~~~~st~~gs~~aWa~~~~i~~~~~~fstl~~N~pDFsRF 280 (572)
T KOG2466|consen 201 YWFPPYKIRHLFTWKAVLTPFAAFGFLIWLLKKAHGLGHLFDSKSTVSGSAHAWAFVRSIMSCIANFSTLIVNAPDFSRF 280 (572)
T ss_pred eeccHHHhhhHHHHHHhhhHHHHHHHHHHHHHhcCCccccccCCCcccccchhHHHHHHHHHHHhccchhhccCchhHhh
Confidence 35666666666666666666666666665554432 111 1 2223333223333445566666666555555544332
Q ss_pred CCCchhHHHHHHHHHHHH-HHHHHHH-HHhccCCCCCCC---CChHHHHHH------HhCchHHHHHHHHHHHHHHHHHH
Q 007943 294 GRDIPIGLIGSMVITITV-YCVLSAT-LCLMQPYSQIDV---DAPFTLAFQ------AVGMNWAKYIVALGALKGMTTVL 362 (584)
Q Consensus 294 ~r~~p~ai~~~~~~~~i~-y~l~~~~-~~~~~~~~~~~~---~~p~~~~~~------~~g~~~~~~~~~~~~~~~~~~~~ 362 (584)
.|+ |.+.+++.++..-+ +.+..+. +......+.+.. -+|+-.+-+ ..|.+....++..+..++.++..
T Consensus 281 ~ks-p~a~~~~Ql~alp~~~~l~~liGVlv~sa~~~iYG~~~W~Pldil~~~l~~~y~~G~RAgvFfi~~~f~laql~~N 359 (572)
T KOG2466|consen 281 AKS-PNAIWWGQLIALPLPFGLTPLIGVLVTSASKIIYGTNYWSPLDILNQWLDTNYSAGARAGVFFIGFGFALAQLGTN 359 (572)
T ss_pred cCC-CCccchhhhhhhhhhhhhhhheeeEehhhhhhhhcccccCHHHHHHHHhccccccccchhhhHHHHHHHHHHHhcc
Confidence 222 34444444432222 2222111 111111222221 235443322 23556677777777777777665
Q ss_pred HHHHhhhHHHHHHHHhcCCCchhhhc
Q 007943 363 LANVIGQARYFTHIGRTHMAPPFLAA 388 (584)
Q Consensus 363 ~~~~~~~sR~l~~~ardg~lP~~~~~ 388 (584)
++.-.. -.++.-.+++||.+.-
T Consensus 360 ISan~v----aagnDl~~L~PkyinI 381 (572)
T KOG2466|consen 360 ISANSV----AAGNDLSALLPKYINI 381 (572)
T ss_pred hhcccc----ccchhhHhhCcceEEe
Confidence 543211 1233344677877655
No 104
>TIGR00842 bcct choline/carnitine/betaine transport. properties inherent to their polypeptide chains.
Probab=95.68 E-value=3.5 Score=43.45 Aligned_cols=114 Identities=15% Similarity=0.108 Sum_probs=56.1
Q ss_pred ccccCHHHHHHHHHHHhhhhhhHHc-----------cHHhHhhccCc-------------h-HHHHHHHHHHHHHHHHHH
Q 007943 70 KKNLNWWDLIWFGIGAVMGAGIFVL-----------TGEAARNFAGP-------------A-VIISYLISGISALLSVLC 124 (584)
Q Consensus 70 ~r~l~~~~~~~~~~~~~ig~gi~~~-----------~~~~~~~~~G~-------------~-~~~~~ii~~l~~~~~~~~ 124 (584)
|.+++.++-+++.++.-+|.|+..- |+..... +.. . .+-+|.+-++..+..++.
T Consensus 34 kPefS~~sW~aMlf~aG~G~gllfwgvaEP~~h~~~Pp~g~~~-~s~~~A~~~A~~~~~fHWG~~aWaiY~l~ala~aY~ 112 (453)
T TIGR00842 34 KPEFSTLSWLAMLFAAGMGIGLMFWGVAEPLTYYLTPPFGAGP-TSTTQAQEQALAYTLFHWGIHAWAIYALVGLALAYF 112 (453)
T ss_pred CCCCcchHHHHHHHHHhhhhhhhhhHhhhHHHHhCCCCCCCCC-CChHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHh
Confidence 5678899999999988888775431 1110000 001 1 234455556666666663
Q ss_pred HHhhhhccccCCchhhh----HHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 007943 125 YTEFSVELPVAGGSFAY----LRVELGDFVAYIAAGNILFEYVVSGASVARSWTSYFATLCNHD 184 (584)
Q Consensus 125 ~~el~~~~P~~Gg~y~~----~~~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~ 184 (584)
+.+-.....-+...+.. .+..+|+..-.+.-.....+-..+........+.-++.+++.+
T Consensus 113 ~~rk~~~~~iss~~~pllG~~~~g~~g~~ID~l~v~ati~G~atsLGlg~~qi~~gl~~l~gi~ 176 (453)
T TIGR00842 113 HVRKGLPLRLSSALVPLLGERVNGPIGKAIDIMALVATLFGVATSLGLGAPQINAGLSALFGIP 176 (453)
T ss_pred heecCCCCchhhhhhcccCCcccCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCC
Confidence 32322211111111111 1223444444444444445555555555666666666766543
No 105
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=95.37 E-value=0.36 Score=52.22 Aligned_cols=58 Identities=19% Similarity=0.142 Sum_probs=36.7
Q ss_pred HHHhhhhhccCCCCccccccccHHHHHHHHHHHHHHhc---CChhhHHHHHHHHHHHHHHHHH
Q 007943 497 MGLQLTVKEARKPKMWGVPLLPWLPSACIAVNVFVMGS---VDGQSFVRFMIWTFLLLVYYLF 556 (584)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~~~y~~ 556 (584)
..+..|+++++.+++||.|. +.|.++++.+++++.. .+.........+.++|+..|+.
T Consensus 408 a~i~lR~~~p~~~rp~r~p~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~ 468 (501)
T TIGR00911 408 GLLWLRYKRPEMNRPIKVPL--FFPVFFLLSCLFLIILSLYSPPVGCGVGFIIMLTGVPVYFF 468 (501)
T ss_pred HHHheeccCCCCCCCccCch--HHHHHHHHHHHHHhhhhhccCchhhHHHHHHHHHHHHHHHH
Confidence 44456667778889999987 4566666666555532 2333344556677778777763
No 106
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=95.19 E-value=0.12 Score=50.77 Aligned_cols=241 Identities=14% Similarity=0.053 Sum_probs=137.5
Q ss_pred cccccccCHHHHHHHHHHHhhhhhhHHccHHhHhhccCchHHHHHHHHHHHHHHHHHHHHhhhhccccCCc-------hh
Q 007943 67 HEMKKNLNWWDLIWFGIGAVMGAGIFVLTGEAARNFAGPAVIISYLISGISALLSVLCYTEFSVELPVAGG-------SF 139 (584)
Q Consensus 67 ~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ii~~l~~~~~~~~~~el~~~~P~~Gg-------~y 139 (584)
++-+.+++-|+.-.-....+-|.=+...|-.+ ..||...+.+.+..+.++-.+.-.+.|---. |...| .|
T Consensus 111 Ge~~~kI~a~qAaWNVTNAIQGMFivgLP~Av--lhGGyw~i~amvg~A~vCcyTGk~Li~CLYE-~~~dGevVrvRdsY 187 (524)
T KOG4303|consen 111 GEASEKISALQAAWNVTNAIQGMFIVGLPIAV--LHGGYWSIGAMVGVAYVCCYTGKLLIECLYE-NGEDGEVVRVRDSY 187 (524)
T ss_pred CCCCCccHHHHHhhhhhhhhheeeEeccceee--eEcchhHHHHHHhhhhhhhccchhhhhhhcc-CCCCCcEEEeehhH
Confidence 34456788888876666666554444444333 3377767776666665554444333332111 11122 23
Q ss_pred hhHHHH-hchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcceeccccccccCcchhHHHHHHHHHHHHH
Q 007943 140 AYLRVE-LGDFVA-YIAAGNILFEYVVSGASVARSWTSYFATLCNHDPGSFRIHVSSVAEDYSHLDPIAVIVSFFVCVGA 217 (584)
Q Consensus 140 ~~~~~~-~g~~~g-~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (584)
.-+... ++|.+| ..+...-.+....++..+....++.+...++..+-+- .+ +.++.-+.++-+..
T Consensus 188 vaIA~~C~~P~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~fP~~svd~--------~s---Wm~i~~a~LLpc~F-- 254 (524)
T KOG4303|consen 188 VAIADFCYKPGLGGRWVLAAQLIELLMTCILYVVVAGDLLQSCFPGLSVDK--------AS---WMMITSASLLPCSF-- 254 (524)
T ss_pred HHHHHHhcCCCcchheeeHHHHHHHHHHHHhhhheechhhhccCCCCCccc--------cc---hhhhhhHHHhhhHH--
Confidence 333333 666665 5666677778888888888888888888776432111 00 11333333333332
Q ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCC-CCCchhHHHHHHHHHHHhhchhhhhhhhcccccCCCCC
Q 007943 218 CLSMKGSSRFNSVATIVHIVILIFILITGLTQANTANYAIF-APNGVRGILKASAVLFFAYVGFDGVATLGEEVKNPGRD 296 (584)
Q Consensus 218 ~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~r~ 296 (584)
+...|...++..+.+..++++-++++...+.....-.++.. +.-....+-..+.++.|+|+.---..++-+.+|||.+
T Consensus 255 Lk~Lk~VS~lSf~ct~sH~viN~i~v~YCLs~~~dW~wskv~Fsidi~~fPisvG~iVFsYTSqIFLP~LEGNM~~ps~- 333 (524)
T KOG4303|consen 255 LKDLKIVSRLSFFCTISHLVINLIMVLYCLSFVSDWSWSKVTFSIDINTFPISVGMIVFSYTSQIFLPNLEGNMKNPSQ- 333 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccceeEEEEEEcccCceEEEEEEEeeeceeeccccccccCChhH-
Confidence 35678889999999988888776666655544322222100 0001112222344557888888788889999999964
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhccC
Q 007943 297 IPIGLIGSMVITITVYCVLSATLCLMQP 324 (584)
Q Consensus 297 ~p~ai~~~~~~~~i~y~l~~~~~~~~~~ 324 (584)
.-.-+-++-+...++=.++.+.......
T Consensus 334 Fn~Ml~WsHIAAaVfK~~Fg~~~fLTf~ 361 (524)
T KOG4303|consen 334 FNVMLKWSHIAAAVFKVVFGMLGFLTFG 361 (524)
T ss_pred heeeeehHHHHHHHHHHHHHHheeeeec
Confidence 4556667777777776666555444443
No 107
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=94.81 E-value=0.43 Score=49.92 Aligned_cols=68 Identities=16% Similarity=0.132 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHhhhhhccCCCCccccccccHHHHHHHHHHHHHHhcC---C-hhhHHHHHHHHHHHHHHHHHHh
Q 007943 489 VPVWFLATMGLQLTVKEARKPKMWGVPLLPWLPSACIAVNVFVMGSV---D-GQSFVRFMIWTFLLLVYYLFVA 558 (584)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~i~~~~y~~~~ 558 (584)
....+......+.|.++++.+||+|+|.. .|.+-++.+++++... + .....+....++.|+.+|+...
T Consensus 369 l~~~l~~~gll~lR~k~p~~~rPiKvpl~--~p~~~~~~~i~lvvip~~~~~~~~~~ig~~i~l~G~~~Y~~~i 440 (479)
T KOG1287|consen 369 LFRGLSMAGLLWLRWKHPPLPRPIKVPLF--IPILFLLICIFLVVIPIISDFPVETLIGIGIILSGVPFYFLFI 440 (479)
T ss_pred HHHHHHHHHHHHHHhhCCCCCCCEeeeee--hHHHHHHHHHHHhheeeeecCCccchhHHHHHHHhhhhheEEE
Confidence 34444555566677778889999999975 4555555555555543 3 2125566667777888887653
No 108
>COG3158 Kup K+ transporter [Inorganic ion transport and metabolism]
Probab=93.52 E-value=5.9 Score=42.05 Aligned_cols=274 Identities=16% Similarity=0.200 Sum_probs=123.2
Q ss_pred chhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHhhcc--cccCCCCCCCCC---------chhHHHHHH
Q 007943 202 LDPIAVIVSFFVCVGACLSMKGSSRFNSVATIVHIVILIFILITGLTQ--ANTANYAIFAPN---------GVRGILKAS 270 (584)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~---------g~~~~~~~~ 270 (584)
...+++++++.+..+.-.|....+| .++.+.++-++.+...|+.+ .+++-+...+|. ++.+++ .+
T Consensus 148 Vvpitl~IL~~LF~iQ~~GT~~Vg~---~FGPVm~lWF~~l~~~Gl~~i~~~p~IL~AiNP~yAi~fl~~~~~~gf~-vL 223 (627)
T COG3158 148 VVPITLIILVLLFLIQRFGTGRVGK---LFGPVMLLWFLALAVLGLINIIDDPEILRAINPYYAVHFLLEEGFVGFF-VL 223 (627)
T ss_pred cHHHHHHHHHHHHHHhcccchhhhh---hhccHHHHHHHHHHHHHHHHHhcCHHHHHHhChHHHHHHHHhCCceEEE-Ee
Confidence 4466777777777777778665555 45555555555555555553 334333333332 221111 13
Q ss_pred HHHHHhhchhhhhhhhcccccC-CCCCchhHHHHHHHHHHHHHHHHHHHHHhccCCCCC-CCCChHHHHHHHhCchHHHH
Q 007943 271 AVLFFAYVGFDGVATLGEEVKN-PGRDIPIGLIGSMVITITVYCVLSATLCLMQPYSQI-DVDAPFTLAFQAVGMNWAKY 348 (584)
Q Consensus 271 ~~~~~~~~G~e~~~~~a~E~k~-p~r~~p~ai~~~~~~~~i~y~l~~~~~~~~~~~~~~-~~~~p~~~~~~~~g~~~~~~ 348 (584)
..++.+.+|-|+- -.++-+ .+|.+.+|=..-. .=.++.++.-.+..--.+. ...+|+...+- .|...
T Consensus 224 GaVfLavTGaEAL---YADmGHfGr~pI~~AWf~vv----~P~L~LNY~GQGA~vL~~p~a~~npFF~~~P----~~ali 292 (627)
T COG3158 224 GAVFLAVTGAEAL---YADMGHFGRKPIRVAWFFVV----LPCLLLNYFGQGALLLSNPEAIGNPFFLLAP----DWALI 292 (627)
T ss_pred eeeeeeeccHHHH---HhhccccCCccHHHHHHHHH----HHHHHHHHccccceeccCcccccCcHHHhCh----hhHHH
Confidence 3456677888863 233333 3454433322111 1122222222221111111 12456544332 23322
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCch-hhhcccCc-cc---cchHHHHHHHHHHHHHHHhhcHHHHHHHH
Q 007943 349 IVALGALKGMTTVLLANVIGQARYFTHIGRTHMAPP-FLAAINGK-TG---TPVNATVVMSLANSVVAFFTSLDVLANLL 423 (584)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~sR~l~~~ardg~lP~-~~~~~~~~-~~---~P~~ai~~~~~~~~~~~~~~~~~~l~~~~ 423 (584)
-+.+.+..+..-+..+...++--+....-|-|++|+ ...+.+++ .| .|....++...+..+...+.+-+.+.+..
T Consensus 293 P~viLAT~ATVIASQAvISGaFSLtrQAi~Lg~lPrm~I~~TSe~~~GQIYiP~VN~~L~~~V~~~vl~F~~S~~LAaAY 372 (627)
T COG3158 293 PLVILATAATVIASQAVISGAFSLTRQAIRLGYLPRMRIRHTSETESGQIYIPAVNWLLLVAVVFVVLGFGSSSNLAAAY 372 (627)
T ss_pred HHHHHHHHHHHHHHHHHHhhHhHHHHHHHHhCCCCceEEEecCCcccceEEehHHHHHHHHHHhheeeEecChHHHHHhh
Confidence 222222222222222233333333334446789994 34444433 22 57655554444444444445666677766
Q ss_pred HHHHHHHHHHHHH-HHHhhhhhcCCCCCccchhHHHHHHHHHHHH----HhHhhhhccccCCCcchhhHHHHHHHHHHH
Q 007943 424 SISTLFIFSLVAL-ALLVRRYYVAGETSECDQKKLIVFLALIISS----SIASSAYWATSDNGWIGYIVTVPVWFLATM 497 (584)
Q Consensus 424 ~~~~~~~~~~~~~-~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (584)
+++.-....+..+ ...+.|++.+ +..+...+..+... .++.+.....-..||.++.+.+++..+...
T Consensus 373 GiAVTgtM~iTt~L~~~~~~~~w~-------w~~~~~~~~~~~f~~id~~Ff~AN~~Ki~~GGw~pllia~~i~~vM~t 444 (627)
T COG3158 373 GIAVTGTMVITTILLTVVMRKKWK-------WRKWLVALILIVFLAIDILFFAANLLKIHDGGWLPLLLAAVIFFVMWT 444 (627)
T ss_pred ChheeehhHHHHHHHHHHHHHhcC-------ccHHHHHHHHHHHHHHHHHHHHhhhhhhccCCChHHHHHHHHHHHHHH
Confidence 6665555555544 3334444422 12223333333222 223333333334777776666665554443
No 109
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=91.73 E-value=16 Score=36.89 Aligned_cols=276 Identities=10% Similarity=0.081 Sum_probs=146.6
Q ss_pred cccCHHHHHHHHHHHhhhhhhHHccHHhHhhccCchH----HHHHHHHHHHHHH-HHHHHHhhhhccc------cCCchh
Q 007943 71 KNLNWWDLIWFGIGAVMGAGIFVLTGEAARNFAGPAV----IISYLISGISALL-SVLCYTEFSVELP------VAGGSF 139 (584)
Q Consensus 71 r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~----~~~~ii~~l~~~~-~~~~~~el~~~~P------~~Gg~y 139 (584)
|+++..-+.+...++=+++..|. +||++ =++|++-+.+..+ ..+++.-++.++. ++=...
T Consensus 39 Rsmgg~VlAmt~~aTYisaSSFi---------gGpgaayk~GlgwvlLa~iqvp~~~l~lgvlgkk~~~~ar~~nAltI~ 109 (473)
T COG4145 39 RSMGGIVLAMTFTATYISASSFI---------GGPGAAYKYGLGWVLLAMIQVPTVWLALGVLGKKFAILAREYNALTIN 109 (473)
T ss_pred CcccceehhhHHHHHHHHHhhhc---------CCCcHHHHhchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhCCeeHH
Confidence 56666555444444445444332 44431 2345555555554 4445555555443 122344
Q ss_pred hhHHHH-hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcceeccccccccCcchhHHHHHHHHHHHHHh
Q 007943 140 AYLRVE-LGDFVAYIAAGNILFEYVVSGASVARSWTSYFATLCNHDPGSFRIHVSSVAEDYSHLDPIAVIVSFFVCVGAC 218 (584)
Q Consensus 140 ~~~~~~-~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (584)
++.++. -++..-++.+....+.+...+.+.-.+.+..+....+.+... .+.+....+...-..
T Consensus 110 D~l~~RY~s~fl~~las~~Lifff~~~m~~qfiGgarLlE~~~gidY~t----------------gL~ifa~~V~iYt~f 173 (473)
T COG4145 110 DLLFARYQSRFLVWLASLSLIFFFVGAMTVQFIGGARLLETALGIDYTT----------------GLLIFAVSVAIYTAF 173 (473)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHCCCchh----------------hHHHHHHHHHHHHhh
Confidence 555444 568889999999999999999999999999999988764321 111111222333444
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhhccc-------------ccCCCCCCCCCc--hhHHHHHH-HHHHHhhchhhh
Q 007943 219 LSMKGSSRFNSVATIVHIVILIFILITGLTQA-------------NTANYAIFAPNG--VRGILKAS-AVLFFAYVGFDG 282 (584)
Q Consensus 219 ~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-------------~~~~~~~~~~~g--~~~~~~~~-~~~~~~~~G~e~ 282 (584)
-|.|.....-.+-+.++++..+++.+..+..+ |++-..|...+. -.+++.++ ..+.+.-.|..-
T Consensus 174 GGFRAvvltD~IQG~vmligtv~Lf~~~i~~~GG~~~av~tl~~iDp~lv~P~~~~~~l~~~Fm~Sfwilv~~gvlglP~ 253 (473)
T COG4145 174 GGFRAVVLTDTIQGLVMLIGTVVLFVGVIYAGGGLSNAVETLTTIDPGLVTPQGADDILDPPFMASFWILVCFGVLGLPH 253 (473)
T ss_pred cceeeeehHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHhCCccccCCCCCcccccchHHHHHHHHHHHHHhcCcH
Confidence 67777766666656665555544444333211 122122221111 01222221 122233333322
Q ss_pred hhhhcccccCCCCCchhHHHHHHHHHHHHHHHHHHHH--HhccCCCCCCCCChHHHHHHHhCchHHHHHHHHHHHHHHHH
Q 007943 283 VATLGEEVKNPGRDIPIGLIGSMVITITVYCVLSATL--CLMQPYSQIDVDAPFTLAFQAVGMNWAKYIVALGALKGMTT 360 (584)
Q Consensus 283 ~~~~a~E~k~p~r~~p~ai~~~~~~~~i~y~l~~~~~--~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~ 360 (584)
...---..|| +|.+.++++++..++.++-+.+-.+- ...+-+|-...|.-....+-..-.|....+.....+.+.++
T Consensus 254 t~vr~ia~kD-skaih~gmiigt~vi~il~~gmhl~G~~graViPdlt~~D~Vip~lalkvlpp~~agifl~apmaAiMS 332 (473)
T COG4145 254 TAVRCIAFKD-SKAIHRGMIIGTIVIAILMLGMHLAGALGRAVIPDLTVVDLVIPTLALKVLPPFAAGIFLAAPMAAIMS 332 (473)
T ss_pred HHHHHHhccc-hhHHhcCcchHHHHHHHHHHHHHHhhhhhhhhcCCCCccchhHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 2222223466 57888999988888877666554441 22222222233444444555556566666666666777777
Q ss_pred HHHHHHhhhHHH
Q 007943 361 VLLANVIGQARY 372 (584)
Q Consensus 361 ~~~~~~~~~sR~ 372 (584)
+.++.+.-.|-.
T Consensus 333 TIds~L~~~sst 344 (473)
T COG4145 333 TINSQLLQSSST 344 (473)
T ss_pred HHHHHHHHHHHH
Confidence 777776555443
No 110
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism]
Probab=91.26 E-value=3.6 Score=44.39 Aligned_cols=224 Identities=10% Similarity=0.093 Sum_probs=115.0
Q ss_pred CCchhhhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcceeccccccccCcchhHHHHHHHHHH
Q 007943 135 AGGSFAYLRVELGDFVAYIAAGNILFEYVVSGASVARSWTSYFATLCNHDPGSFRIHVSSVAEDYSHLDPIAVIVSFFVC 214 (584)
Q Consensus 135 ~Gg~y~~~~~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (584)
-...|+|.+..|++....+....+.+..+...+...+.-+..++...+.+-. . ...+....+..
T Consensus 107 v~~~~eYl~~Rf~~~~r~l~~l~f~l~~~~~l~v~~y~pal~~~qvtg~~~~-l---------------~~~~~~~ic~~ 170 (585)
T KOG2349|consen 107 VTTMYEYLEKRFGGRVRYLATLSFILMIFLYLPVDMYAPALAINQVTGINLY-L---------------IVVILGLICVF 170 (585)
T ss_pred eeehhHHHHHHhcccchhhHHHHHHHHHHhheeeeEeehHHHHHHHhccCce-e---------------ehHHHHHHHHH
Confidence 3468999999999987677777777777777777777777777776654321 0 11112222333
Q ss_pred HHHhccchhHHHHHHHHHHHHHHHHHHHHHHhhcccc-------------cCCCC-CCCC-----CchhHHHHHHHHHHH
Q 007943 215 VGACLSMKGSSRFNSVATIVHIVILIFILITGLTQAN-------------TANYA-IFAP-----NGVRGILKASAVLFF 275 (584)
Q Consensus 215 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-------------~~~~~-~~~~-----~g~~~~~~~~~~~~~ 275 (584)
.-..-|+|..-+.-.+=+.+++.....+++.+..... ..+.. .+.. +.++.++.+-.....
T Consensus 171 YT~~GGlkaVi~TDv~Q~~iml~~~~~v~i~gt~~vGG~~~V~e~a~~~gr~~~~~~~~~dp~vr~t~W~~~~Gg~~~~l 250 (585)
T KOG2349|consen 171 YTALGGLKAVIWTDVVQTVIMLGGVLAVMIKGTMKVGGLGRVLEKAFDAGRVNFVAEFLRDPTVRHTPWSLLFGGTIMWL 250 (585)
T ss_pred HHHhcCeeEEEEhhHHHHHHHHHHHHHHhheeehhcCcccceeeecccCCceeecccccCCCcccccchhHhcCCcHHHH
Confidence 3344577777676666677777777766666554211 00111 1222 123335555444444
Q ss_pred hhchhhh-hhhhcccccCCCCCchhHHHHHHHHHHHHHHHHHHH-HHhcc---CCCCC------CCCChHHHHHHHhCc-
Q 007943 276 AYVGFDG-VATLGEEVKNPGRDIPIGLIGSMVITITVYCVLSAT-LCLMQ---PYSQI------DVDAPFTLAFQAVGM- 343 (584)
Q Consensus 276 ~~~G~e~-~~~~a~E~k~p~r~~p~ai~~~~~~~~i~y~l~~~~-~~~~~---~~~~~------~~~~p~~~~~~~~g~- 343 (584)
.+.|.+. ..+----.|+ .|...++++.......+...+..+. +..-. +-|.+ .+|.-++.......+
T Consensus 251 ~~~~vnQ~~VQR~lsl~s-lk~ak~~~~~~~~~~~l~~~~~~~~G~i~~~~Y~~Cdpl~~g~v~~~D~~~P~fV~d~~~~ 329 (585)
T KOG2349|consen 251 SYYGVNQLIVQRYLSLPS-LKHAKPSLLLFGYGVLLIMFIMVFVGMIIYALYTDCDPLCGGLVGCPDQLLPLFVMDLMGH 329 (585)
T ss_pred HHHhhhHHHHhHHhcccc-HHHhhhhhhhhhhHHHHHHHhhcccceeEeeecccCCcccccccCCccccccHHHHHhcCC
Confidence 5555543 3322222233 3445555555555544443333322 11110 11111 123333333333333
Q ss_pred -hHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 007943 344 -NWAKYIVALGALKGMTTVLLANVIGQARYFTH 375 (584)
Q Consensus 344 -~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~ 375 (584)
+.+.-++..++..+.+++.-+.+.+.|-+.+.
T Consensus 330 ~pGl~GLfia~vfsA~LSsLSS~~NS~s~v~~e 362 (585)
T KOG2349|consen 330 LPGLRGLFIAVVFSAALSSLSSIFNSLSTVFLE 362 (585)
T ss_pred CCCccchhHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 34444555555666666666777777766654
No 111
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=90.26 E-value=0.084 Score=49.94 Aligned_cols=37 Identities=16% Similarity=0.222 Sum_probs=0.0
Q ss_pred HHHHhHhhhhccccC-CCcchhhHHHHHHHHHHHHHhh
Q 007943 465 ISSSIASSAYWATSD-NGWIGYIVTVPVWFLATMGLQL 501 (584)
Q Consensus 465 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 501 (584)
+.+++++...|.+.. ..+..+.+..+..+++..+++|
T Consensus 88 imi~lLv~~L~tLtGQ~LF~Gi~~l~l~~lLaL~vW~Y 125 (381)
T PF05297_consen 88 IMIVLLVSMLWTLTGQTLFVGIVILFLCCLLALGVWFY 125 (381)
T ss_dssp --------------------------------------
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666676655 4444555555555555555444
No 112
>COG4146 Predicted symporter [General function prediction only]
Probab=83.07 E-value=56 Score=33.10 Aligned_cols=236 Identities=8% Similarity=-0.004 Sum_probs=113.1
Q ss_pred chhhhHHHHhchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHccCCCCCcceeccccccccCcchhHHHHH---HHH
Q 007943 137 GSFAYLRVELGDFVAYIAAGNILFEYVV-SGASVARSWTSYFATLCNHDPGSFRIHVSSVAEDYSHLDPIAVIV---SFF 212 (584)
Q Consensus 137 g~y~~~~~~~g~~~g~~~g~~~~l~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 212 (584)
-..++.++.|++....+...++.+.|.. ..+...++.+..++..++..... + +.+. ..++.+++ ++-
T Consensus 104 TIPdFlE~RfD~~TR~Iis~lFLi~y~~~flPtvLYsGAla~nsiF~l~~v~-~-----IS~g---~~i~~~viaiG~~g 174 (571)
T COG4146 104 TIPDFLEERFDKTTRMIISFLFLIAYGVCFLPTVLYSGALALNSIFHLGEVL-Q-----ISHG---AAIWLLVIAIGLAG 174 (571)
T ss_pred cchHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHhhhhchHhhh-C-----cCcc---hHHHHHHHHHHHHH
Confidence 4678999999999999999888888854 46677777778888877653211 0 0000 11111111 222
Q ss_pred HHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHhhcc---cc------------cCCCC----CCCCCchhHHHHHHHHH
Q 007943 213 VCVGACLSMKGSSRFNSVATIVHIVILIFILITGLTQ---AN------------TANYA----IFAPNGVRGILKASAVL 273 (584)
Q Consensus 213 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~------------~~~~~----~~~~~g~~~~~~~~~~~ 273 (584)
+.....-|.|..+....+-.+..++.-+.+-+.++.+ ++ .+.++ +-.|..|...+.++...
T Consensus 175 ~~Yai~GGLkA~AvsDtiNgigLviGgLlvPifaLi~lG~Gsfa~G~~~itt~h~eKlNaIGg~~d~vPw~a~fTGll~v 254 (571)
T COG4146 175 ILYAIIGGLKAMAVSDTINGIGLVIGGLLVPIFALIALGKGSFAQGIEQITTVHAEKLNAIGGPTDPVPWGAAFTGLLLV 254 (571)
T ss_pred HHHHHHcchhheeeccccchhhHhhhhHHHHHHHHHhhcCccHhhchhhhhccCHHHhcccCCCCCCCcHHHHHHhHhhh
Confidence 3333445666654433333333323222222222221 11 11111 22334577778887776
Q ss_pred HHhhc----hhhhhhhhcccccCCCCCchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCC-CCChHHHHHHHhCchHHHH
Q 007943 274 FFAYV----GFDGVATLGEEVKNPGRDIPIGLIGSMVITITVYCVLSATLCLMQPYSQID-VDAPFTLAFQAVGMNWAKY 348 (584)
Q Consensus 274 ~~~~~----G~e~~~~~a~E~k~p~r~~p~ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~-~~~p~~~~~~~~g~~~~~~ 348 (584)
-+.|- |.-.=+-.+++.++.+|-+-.+-..-+....++-+...++.-. .+ ++. .|-.+.....+.-...+.-
T Consensus 255 N~FYWcTNQ~IvQRtLaak~LaeGQKG~Llaa~fk~~~pl~LvLPGliafhl-yg--dL~~aDmaYP~LVn~VlPv~l~G 331 (571)
T COG4146 255 NTFYWCTNQGIVQRTLAAKSLAEGQKGALLAAVFKMLDPLVLVLPGLIAFHL-YG--DLPKADMAYPTLVNNVLPVPLVG 331 (571)
T ss_pred heeeeeccHHHHHHHHhhhhhhccccccHHHHHHHHhchHHhhhhHHHHHHH-hc--cCCccccccHHHHHhccchHHHH
Confidence 55443 3333344455666666655444443333333333333333211 11 122 2223334444444334444
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCchhhhc
Q 007943 349 IVALGALKGMTTVLLANVIGQARYFTHIGRTHMAPPFLAA 388 (584)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~sR~l~~~ardg~lP~~~~~ 388 (584)
+......-+..++.|+.+.+++- ++.|. ..|+++.+
T Consensus 332 Ff~AvLFGAilStFN~fLNSa~T-lf~~d---iy~~I~k~ 367 (571)
T COG4146 332 FFGAVLFGAILSTFNGFLNSAST-LFSMD---IYRRIIKQ 367 (571)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhH-Hhhhh---hhhHhhcC
Confidence 44444444555666666655554 44442 44544433
No 113
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=79.13 E-value=85 Score=32.63 Aligned_cols=43 Identities=14% Similarity=0.086 Sum_probs=29.8
Q ss_pred HHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 007943 334 FTLAFQAVGMNWAKYIVALGALKGMTTVLLANVIGQARYFTHI 376 (584)
Q Consensus 334 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~ 376 (584)
..+.++..-+++...++.+..+.+-.++..+..++..=+....
T Consensus 282 ~~~~L~p~~G~~a~~lF~igLlaAG~sS~it~~~ag~~v~~gf 324 (390)
T TIGR01197 282 IGVLLGCLFSPAAGYIFAVGLLAAGQSSGMVGTYSGQFVMEGF 324 (390)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3444555556788888888888888888888777655554443
No 114
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=73.35 E-value=64 Score=33.11 Aligned_cols=50 Identities=6% Similarity=-0.105 Sum_probs=27.6
Q ss_pred cccccccHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhhcc
Q 007943 512 WGVPLLPWLPSACIAVNVFVMGSVDGQSFVRFMIWTFLLLVYYLFVALHAS 562 (584)
Q Consensus 512 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~~ 562 (584)
.-....+..|+++.+....++...-....+..+..++.|+. ...++++++
T Consensus 284 ~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~-l~~~~~~~~ 333 (358)
T PLN00411 284 YLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFY-AVMWGKANE 333 (358)
T ss_pred HHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHH-HHHhhhhhh
Confidence 34456788899888888777766544233333334444433 333444333
No 115
>PTZ00206 amino acid transporter; Provisional
Probab=71.18 E-value=68 Score=34.30 Aligned_cols=57 Identities=19% Similarity=0.162 Sum_probs=44.4
Q ss_pred CChHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCchhhh
Q 007943 331 DAPFTLAFQAVGMNWAKYIVALGALKGMTTVLLANVIGQARYFTHIGRTHMAPPFLA 387 (584)
Q Consensus 331 ~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~ardg~lP~~~~ 387 (584)
...+.++.+...+++...++.+...+..++++.+++...+..+...-.+...|+++.
T Consensus 120 ~~sY~~la~~~~G~~g~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~ 176 (467)
T PTZ00206 120 IRTYEGVARVLLGPWGSYYVAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFLK 176 (467)
T ss_pred CCCHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhh
Confidence 346778888766799999999999999999999999999988877655444454443
No 116
>PRK15015 carbon starvation protein A; Provisional
Probab=68.37 E-value=2e+02 Score=31.91 Aligned_cols=99 Identities=20% Similarity=0.040 Sum_probs=59.8
Q ss_pred HHHHHHHHHhhhhhhHHccHHhHhhccCch-HHHHHHHHHHHHHHHHHHHHhhhhccccCCchhhhHHHHhchHHHHHHH
Q 007943 77 DLIWFGIGAVMGAGIFVLTGEAARNFAGPA-VIISYLISGISALLSVLCYTEFSVELPVAGGSFAYLRVELGDFVAYIAA 155 (584)
Q Consensus 77 ~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ii~~l~~~~~~~~~~el~~~~P~~Gg~y~~~~~~~g~~~g~~~g 155 (584)
-++.-=+.++.|.|....|-..+. -|.. ..+..+++.++.-.+-=..+-+.|.--+.-+.-+.+++..|+..+.+..
T Consensus 87 VLfGHHFasIAGAGPivGPvlAa~--~GwlP~~LWIl~G~vf~GaVhD~~~L~~S~R~~GrSig~ia~~~iG~~~~~lfl 164 (701)
T PRK15015 87 VLFGHHFAAIAGAGPLVGPVLAAQ--MGYLPGMIWLLAGVVLAGAVQDFMVLFVSTRRDGRSLGELVKEEMGPTAGVIAL 164 (701)
T ss_pred chhHHHHHHHhccCccHHHHHHHH--HcchHHHHHHHHcceeechhhhhhheeeeecCCCccHHHHHHHHhhHHHHHHHH
Confidence 445556777888998888877654 4544 4443445555544433333333333333335677788999999988887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 007943 156 GNILFEYVVSGASVARSWTSYF 177 (584)
Q Consensus 156 ~~~~l~~~~~~a~~~~~~~~~~ 177 (584)
...++..++..+..+...++.+
T Consensus 165 i~i~~iliiviAvfalvvv~al 186 (701)
T PRK15015 165 VACFMIMVIILAVLAMIVVKAL 186 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7666666666655555544444
No 117
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=67.80 E-value=1.8e+02 Score=31.14 Aligned_cols=37 Identities=8% Similarity=0.104 Sum_probs=23.5
Q ss_pred HHhhhhhccCCCCccccccccH----HHHHHHHHHHHHHhc
Q 007943 498 GLQLTVKEARKPKMWGVPLLPW----LPSACIAVNVFVMGS 534 (584)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~p~----~~~~~~~~~~~~~~~ 534 (584)
.+.+|+++++.++|||.|..|+ ...++++.+++.+..
T Consensus 379 ~i~lr~~~~~~~rpf~~p~g~~g~~~~~~~~~~~~~~~~~~ 419 (474)
T TIGR03813 379 AIYLRYSQPDRPRPYRIPGGLAGMWFIGGLGFVGSALAFVL 419 (474)
T ss_pred HHHHHhcCCCCCCCeEecCCccchhHHHHHHHHHHHHHHhe
Confidence 3355556777889999987544 455555555555543
No 118
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=67.43 E-value=1.5e+02 Score=30.28 Aligned_cols=104 Identities=18% Similarity=0.025 Sum_probs=72.9
Q ss_pred cCHHHHHHHHHHHhhhhhhHHccHHhHhhccCch-HHHHHHHHHHHHHHHHHHHHhhhhccccCCchhhhHHHHhchHHH
Q 007943 73 LNWWDLIWFGIGAVMGAGIFVLTGEAARNFAGPA-VIISYLISGISALLSVLCYTEFSVELPVAGGSFAYLRVELGDFVA 151 (584)
Q Consensus 73 l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ii~~l~~~~~~~~~~el~~~~P~~Gg~y~~~~~~~g~~~g 151 (584)
.+.+-++..=+.++.|.|....|-..+. =|+. +++..++++++.-.+-=..+-+.|.--+.-+.-+-+++..||..+
T Consensus 52 ~~~~vlfghhf~sIAGaGPI~GPi~aa~--~GwlPa~lWI~~G~if~GaVHD~~sl~~SvR~~G~Si~~i~~~~lG~~~~ 129 (376)
T PF02554_consen 52 TNKWVLFGHHFASIAGAGPIVGPILAAQ--FGWLPALLWIVFGCIFAGAVHDYGSLMASVRHKGKSIGEIAGKYLGKRAK 129 (376)
T ss_pred CchHHhhHHHHHHHhccccchHHHHHHH--hcchHHHHHHHHccHHHHHHHHHHHHhhhhcCCCccHHHHHHHHHHHHHH
Confidence 4556677778888889998887776643 5666 566566677766665555555555444444677788999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007943 152 YIAAGNILFEYVVSGASVARSWTSYFA 178 (584)
Q Consensus 152 ~~~g~~~~l~~~~~~a~~~~~~~~~~~ 178 (584)
.+..+..++..++..+..+...++.+.
T Consensus 130 ~lf~~f~~~~lilV~avF~~v~a~~~~ 156 (376)
T PF02554_consen 130 KLFLIFIFFLLILVIAVFADVVANTFV 156 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999888887777777766666555553
No 119
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=62.58 E-value=13 Score=27.28 Aligned_cols=26 Identities=8% Similarity=0.111 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccch
Q 007943 540 FVRFMIWTFLLLVYYLFVALHASYDA 565 (584)
Q Consensus 540 ~~~~~~~~~i~~~~y~~~~~~~~~~~ 565 (584)
..+.+.+.+++++.|-+|.|++..+.
T Consensus 6 iLi~ICVaii~lIlY~iYnr~~~~q~ 31 (68)
T PF05961_consen 6 ILIIICVAIIGLILYGIYNRKKTTQN 31 (68)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCC
Confidence 44567778889999988888776543
No 120
>PF03595 SLAC1: Voltage-dependent anion channel; InterPro: IPR004695 Two members of the Tellurite-Resistance/Dicarboxylate Transporter (TDT) family have been functionally characterised. One is the TehA protein of Escherichia coli which has been implicated in resistance to tellurite; the other is the Mae1 protein of Schizosaccharomyces pombe which functions in the uptake of malate and other dicarboxylates by a proton symport mechanism. These proteins exhibit 10 putative transmembrane a-helical spanners (TMSs).; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3M76_A 3M7C_A 3M7E_A 3M74_A 3M7B_A 3M71_A 3M72_A 3M77_A 3M7L_A 3M75_A ....
Probab=59.83 E-value=1.7e+02 Score=29.46 Aligned_cols=17 Identities=24% Similarity=-0.021 Sum_probs=7.6
Q ss_pred cccccccHHHHHHHHHH
Q 007943 512 WGVPLLPWLPSACIAVN 528 (584)
Q Consensus 512 ~~~~~~p~~~~~~~~~~ 528 (584)
.-.+..|.++.......
T Consensus 137 ~p~w~lp~Vg~~v~~~~ 153 (330)
T PF03595_consen 137 NPSWFLPPVGIMVSAVA 153 (330)
T ss_dssp -GGGHHHHTHHHHHHHH
T ss_pred ceeeeecchhHHHHHHH
Confidence 34445555554444433
No 121
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=57.51 E-value=2.3e+02 Score=29.08 Aligned_cols=57 Identities=11% Similarity=-0.079 Sum_probs=35.4
Q ss_pred ccccchHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCC
Q 007943 392 KTGTPVNATVVMSLANSVVAFFTSLDVLANLLSISTLFIFSLVALALLVRRYYVAGET 449 (584)
Q Consensus 392 ~~~~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~ 449 (584)
|...-.-+.+...+++...- ......+......+..+...+..+-+++.|||+++.+
T Consensus 308 ~~~~~~~~~~~pl~~a~~~p-~~~~~~l~~~G~~~~~~~~~~p~l~~~~~r~~~~~~~ 364 (381)
T TIGR00837 308 RFKTGLLTFLPPLVFALFYP-EGFLYAIGYAGLAATIWAVIIPALLAWKARKKFPNAG 364 (381)
T ss_pred CchhhhhhHHhHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 45555555555555554332 2233445555566788888888888888999876643
No 122
>PRK11056 hypothetical protein; Provisional
Probab=52.90 E-value=1.3e+02 Score=24.97 Aligned_cols=49 Identities=22% Similarity=0.287 Sum_probs=23.8
Q ss_pred cccHHHHHHHHHHHHHHhcC---Ch--hhHHHHHHHHHHHHHHHHHHhhhcccc
Q 007943 516 LLPWLPSACIAVNVFVMGSV---DG--QSFVRFMIWTFLLLVYYLFVALHASYD 564 (584)
Q Consensus 516 ~~p~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~i~~~~y~~~~~~~~~~ 564 (584)
..|.+...+.++.++..... .+ ...-.+-.++.+.++.|..++.+.+++
T Consensus 63 g~P~~a~acFflG~f~ySA~vraeyPeiGSNF~p~il~~~L~~Wi~~kl~~~~~ 116 (120)
T PRK11056 63 GLPGLAAACFFLGVFLYSAFVRAEYPEIGSNFFPAVLSVILVFWIGRKLRNRKK 116 (120)
T ss_pred CChHHHHHHHHHHHHHHHHHHHhcCcccccchHHHHHHHHHHHHHHHHHhcccc
Confidence 45666666666555544321 00 011123445555667776665544433
No 123
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=52.71 E-value=1.3e+02 Score=32.20 Aligned_cols=29 Identities=3% Similarity=-0.252 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccchhhh
Q 007943 540 FVRFMIWTFLLLVYYLFVALHASYDAAKE 568 (584)
Q Consensus 540 ~~~~~~~~~i~~~~y~~~~~~~~~~~~~~ 568 (584)
......+.+...++|..++|++++.++++
T Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (478)
T TIGR00913 446 AYLSLPIFIALYIGHKVYKRDKLIIKLDD 474 (478)
T ss_pred HHHHHHHHHHHHHHHHHhccccCcCCHHh
Confidence 34555566666667777788877554443
No 124
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=51.85 E-value=3.4e+02 Score=29.35 Aligned_cols=102 Identities=17% Similarity=0.032 Sum_probs=65.6
Q ss_pred cCHHHHHHHHHHHhhhhhhHHccHHhHhhccCchHHHHHHHHHHHHHHHHHHHHhhhhccccCCchhhhHHHHhchHHHH
Q 007943 73 LNWWDLIWFGIGAVMGAGIFVLTGEAARNFAGPAVIISYLISGISALLSVLCYTEFSVELPVAGGSFAYLRVELGDFVAY 152 (584)
Q Consensus 73 l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ii~~l~~~~~~~~~~el~~~~P~~Gg~y~~~~~~~g~~~g~ 152 (584)
.+.+-++..=+.++.|+|..+.|-..++. |=+...+..+++++++-.+-=.+.-+.|.--+.-+.-+-+++.+|+..|.
T Consensus 52 tnk~vlfGhHFaaIAGAGPivGPvlAAq~-G~Lp~~LWIl~G~VfaGaVhD~~~L~~SvR~~G~Si~~ia~~~lG~~a~~ 130 (575)
T COG1966 52 TNKWVLFGHHFASIAGAGPIVGPALAAQY-GWLPAFLWILLGCVFAGAVHDYFSLMLSVRHGGKSIGEIAGKYLGRTAKV 130 (575)
T ss_pred CCchhhhHHHHHHHhccCcchhHHHHHHh-cCcHHHHHHHHhhhhhhhhhhhhheeeeeccCCccHHHHHHHHhhhhHHH
Confidence 34455666777888899998888776553 42444554677777766655555555544334446777888999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 007943 153 IAAGNILFEYVVSGASVARSWTS 175 (584)
Q Consensus 153 ~~g~~~~l~~~~~~a~~~~~~~~ 175 (584)
+.....++-.++..+..+...+.
T Consensus 131 ~~~~~~l~iliiv~Avfa~vv~~ 153 (575)
T COG1966 131 FFLLLALILLILVGAVFAAVIAK 153 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 88765555555555544444443
No 125
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=50.96 E-value=3.3e+02 Score=28.81 Aligned_cols=92 Identities=15% Similarity=0.221 Sum_probs=63.8
Q ss_pred hhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcceeccccccccCcchhHHHHHHHHHHHHHhc
Q 007943 140 AYLRVELGDFVAYIAAGNILFEYVVSGASVARSWTSYFATLCNHDPGSFRIHVSSVAEDYSHLDPIAVIVSFFVCVGACL 219 (584)
Q Consensus 140 ~~~~~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (584)
..+.+.+|+....+.+...+++...+......+++++++..++.. ...+.+++.++...+...
T Consensus 269 ~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~~is-----------------Y~~~v~i~~l~S~~lSn~ 331 (439)
T PRK15433 269 AYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQYVPLS-----------------YRTLVFILGGFSMVVSNL 331 (439)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc-----------------HHHHHHHHHHHHHHHHHh
Confidence 446789999999999999999999999999999999999876421 114555666666677777
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 007943 220 SMKGSSRFNSVATIVHIVILIFILITGLT 248 (584)
Q Consensus 220 g~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 248 (584)
|.+..-++..-......-..+++++..+.
T Consensus 332 G~~~II~~s~PiL~~iYP~~IvLill~l~ 360 (439)
T PRK15433 332 GLSQLIQISVPVLTAIYPPCIALVVLSFT 360 (439)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 87666555444433333334444444444
No 126
>PRK03557 zinc transporter ZitB; Provisional
Probab=48.77 E-value=2.9e+02 Score=27.63 Aligned_cols=18 Identities=6% Similarity=-0.239 Sum_probs=8.9
Q ss_pred hhhhhcCCCCCccchhHH
Q 007943 440 VRRYYVAGETSECDQKKL 457 (584)
Q Consensus 440 ~~r~~~~~~~~~~~~~~~ 457 (584)
++.+|.+|.+.|+...++
T Consensus 69 ~~s~kp~d~~hpyG~~r~ 86 (312)
T PRK03557 69 QFSRRPPTIRHTFGWLRL 86 (312)
T ss_pred HHhcCCCCCCCCCchHHH
Confidence 334455555555554444
No 127
>PF02667 SCFA_trans: Short chain fatty acid transporter; InterPro: IPR006160 Members of this family may be short chain fatty acid transporters although there has been no experimental characterisation of this function.
Probab=47.57 E-value=3.7e+02 Score=28.45 Aligned_cols=95 Identities=19% Similarity=0.265 Sum_probs=49.9
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHhCchHHH---HHHHHHHHHHHHHHHHHHHhhhH
Q 007943 294 GRDIPIGLIGSMVITITVYCVLSATLCLMQPYSQIDVDAPFTLAFQAVGMNWAK---YIVALGALKGMTTVLLANVIGQA 370 (584)
Q Consensus 294 ~r~~p~ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~---~~~~~~~~~~~~~~~~~~~~~~s 370 (584)
+|-+|-+.+.+++++.+.+++..... ..+|. +..+..|...-. .-+.. +++-..+..++..=-..
T Consensus 14 er~lPD~fvFAilLT~iv~~~a~~~t----------~~~p~-~~v~~Wg~GfW~LL~F~MQM-~LilvtG~~lA~sp~v~ 81 (453)
T PF02667_consen 14 ERYLPDPFVFAILLTFIVFVLALLLT----------GQSPL-EMVEAWGDGFWSLLAFAMQM-ALILVTGYALASSPPVK 81 (453)
T ss_pred HHHCCcHHHHHHHHHHHHHHHHHHhc----------CCCHH-HHHHHHhccHHHHHHHHHHH-HHHHHHHHHHhCChHHH
Confidence 57788888888888777765443321 22333 344444433211 11111 11122222222222223
Q ss_pred HHHHHHHhcCCCchhhhcccCccccchHHHHHHHHHHHHHHHh
Q 007943 371 RYFTHIGRTHMAPPFLAAINGKTGTPVNATVVMSLANSVVAFF 413 (584)
Q Consensus 371 R~l~~~ardg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~ 413 (584)
|.+.|+-+.-++|..|+.+..+++.+.+++
T Consensus 82 -------------r~l~~lA~~p~t~~~Ai~lv~~vs~i~s~i 111 (453)
T PF02667_consen 82 -------------RLLDRLASLPKTPRQAIVLVALVSMIASWI 111 (453)
T ss_pred -------------HHHHHHHhcCCCCcceeeHHHHHHHHHHHH
Confidence 344444445678989998888888766554
No 128
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=47.49 E-value=4.2e+02 Score=29.06 Aligned_cols=48 Identities=6% Similarity=-0.013 Sum_probs=42.0
Q ss_pred hhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 007943 203 DPIAVIVSFFVCVGACLSMKGSSRFNSVATIVHIVILIFILITGLTQA 250 (584)
Q Consensus 203 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 250 (584)
......++++...+|..|+|..+..+......|++.++.+++.+++..
T Consensus 156 ~~~~~~fla~~v~in~~gv~~~ge~ef~~~~~kvl~~v~~~Il~iVi~ 203 (554)
T KOG1286|consen 156 GGWIPDFLAFILIINLFGVLAYGEVEFSLAFNKILTAVGFIILAIVII 203 (554)
T ss_pred CccHHHHHHHHHHHHHHHHhhccceeehHHHHHHHHHHHHHHhheeee
Confidence 456678888999999999999999999999999999998888887753
No 129
>PHA03049 IMV membrane protein; Provisional
Probab=45.49 E-value=29 Score=25.37 Aligned_cols=26 Identities=8% Similarity=0.105 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccch
Q 007943 540 FVRFMIWTFLLLVYYLFVALHASYDA 565 (584)
Q Consensus 540 ~~~~~~~~~i~~~~y~~~~~~~~~~~ 565 (584)
..+.+.+.+++++.|-+|.|++..+.
T Consensus 6 ~l~iICVaIi~lIvYgiYnkk~~~q~ 31 (68)
T PHA03049 6 ILVIICVVIIGLIVYGIYNKKTTTSQ 31 (68)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCC
Confidence 44566777889999988887775544
No 130
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=44.55 E-value=4.4e+02 Score=28.52 Aligned_cols=75 Identities=13% Similarity=0.126 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH-hhhhccccCCc--hhhhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 007943 107 VIISYLISGISALLSVLCYT-EFSVELPVAGG--SFAYLRVELGDFVAYIAAGNILFEYVVSGASVARSWTSYFATLC 181 (584)
Q Consensus 107 ~~~~~ii~~l~~~~~~~~~~-el~~~~P~~Gg--~y~~~~~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~ 181 (584)
..++++++.++.+..++++. .+.+.+.+..| ..++-++.+||+.+....-...+...+...+.....+...-+.-
T Consensus 293 ~~i~~i~gw~~~I~i~~~i~~D~~~v~ns~~g~p~~~i~~~~lg~k~~v~~~~l~ii~~f~~gi~s~~a~SR~v~afa 370 (550)
T KOG1289|consen 293 IAIGFILGWIIIIGIAYTIPDDLDAVLNSSLGQPIVQIYYQALGKKGAVFLLSLIIIALFFMGISSLTASSRLVYAFA 370 (550)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHhcCCCCChHHHHHHHhcCCCceEehhHHHHHHHHHhhHHHHHHHHHHHhhhh
Confidence 44567777777888888888 66666654433 45667789999888655555555555555555555555554443
No 131
>COG4025 Predicted membrane protein [Function unknown]
Probab=44.11 E-value=1.2e+02 Score=28.54 Aligned_cols=15 Identities=13% Similarity=0.107 Sum_probs=11.9
Q ss_pred hHHHHHHHHhcCCCc
Q 007943 369 QARYFTHIGRTHMAP 383 (584)
Q Consensus 369 ~sR~l~~~ardg~lP 383 (584)
.-|-...+.||+.+|
T Consensus 56 ~ve~v~e~~re~~i~ 70 (284)
T COG4025 56 KVEKVMEKVREFQIP 70 (284)
T ss_pred HHHHHHHHHhcCCCc
Confidence 456678899999986
No 132
>PF05767 Pox_A14: Poxvirus virion envelope protein A14; InterPro: IPR008785 This family consists of several Poxvirus virion envelope protein A14-like sequences. A14 is a component of the virion membrane and has been found to be an H1 phosphatase substrate in vivo and in vitro. A14 is hyperphosphorylated on serine residues in the absence of H1 expression [].; GO: 0019031 viral envelope
Probab=43.32 E-value=58 Score=25.57 Aligned_cols=21 Identities=14% Similarity=-0.001 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHhhhcc
Q 007943 542 RFMIWTFLLLVYYLFVALHAS 562 (584)
Q Consensus 542 ~~~~~~~i~~~~y~~~~~~~~ 562 (584)
+.++++.+|.++|-.|+|+=+
T Consensus 53 I~giil~lG~~i~s~ygr~C~ 73 (92)
T PF05767_consen 53 ILGIILTLGIVIFSMYGRYCR 73 (92)
T ss_pred HHHHHHHHHHHHHHHHhhhcC
Confidence 557788889999999977653
No 133
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=42.68 E-value=21 Score=27.98 Aligned_cols=35 Identities=9% Similarity=0.246 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHhhhcccchhhhhhHHHhhcccchh
Q 007943 547 TFLLLVYYLFVALHASYDAAKETDRAAEASNMEAV 581 (584)
Q Consensus 547 ~~i~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 581 (584)
.++..++|++.-|..+++..+..+..++-.+-++|
T Consensus 10 vv~~~i~yf~~~rpqkK~~k~~~~m~~~L~~Gd~V 44 (84)
T TIGR00739 10 VLIFLIFYFLIIRPQRKRRKAHKKLIESLKKGDKV 44 (84)
T ss_pred HHHHHHHHHheechHHHHHHHHHHHHHhCCCCCEE
Confidence 33444555554443333333333333333333333
No 134
>PF06011 TRP: Transient receptor potential (TRP) ion channel; InterPro: IPR010308 This family consists of hypothetical proteins of unknown function found in fungi.
Probab=42.01 E-value=4.4e+02 Score=27.80 Aligned_cols=50 Identities=8% Similarity=-0.077 Sum_probs=24.4
Q ss_pred hHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH-hcCCC
Q 007943 333 PFTLAFQAVGMNWAKYIVALGALKGMTTVLLANVIGQARYFTHIG-RTHMA 382 (584)
Q Consensus 333 p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a-rdg~l 382 (584)
.+....+..|.+.-..++.....+..+...........+...... |.+..
T Consensus 139 Gi~~~a~~~gi~~~~~f~t~~~~~lii~~~~~~~~~~~~~~l~~~~~~~~~ 189 (438)
T PF06011_consen 139 GIERYAQSLGIPTTNAFWTGFIWFLIIIAAVVIVVALLKLILELLARRGSM 189 (438)
T ss_pred CHHHHHHHcCCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 566666677766544444444444444444444444444444333 44444
No 135
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=39.76 E-value=32 Score=28.39 Aligned_cols=26 Identities=8% Similarity=0.148 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHhhhcccchhhhhhH
Q 007943 546 WTFLLLVYYLFVALHASYDAAKETDR 571 (584)
Q Consensus 546 ~~~i~~~~y~~~~~~~~~~~~~~~~~ 571 (584)
++++..+.||+..|..+++..+..+.
T Consensus 10 lv~i~~i~yF~~iRPQkKr~K~~~~m 35 (109)
T PRK05886 10 FLLIMGGFMYFASRRQRKAMQATIDL 35 (109)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 33334444545444444443333333
No 136
>PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members.; GO: 0015079 potassium ion transmembrane transporter activity, 0071805 potassium ion transmembrane transport, 0016020 membrane
Probab=39.29 E-value=2.3e+02 Score=30.73 Aligned_cols=31 Identities=26% Similarity=0.075 Sum_probs=12.1
Q ss_pred HhHhhhhccccCCCcchhhHHHHHHHHHHHH
Q 007943 468 SIASSAYWATSDNGWIGYIVTVPVWFLATMG 498 (584)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (584)
++.+...+..+....-.+.+.+...++...+
T Consensus 339 ~i~vvl~F~~S~~la~AYGiAVt~tM~iTT~ 369 (534)
T PF02705_consen 339 VIAVVLGFRSSSNLAAAYGIAVTGTMLITTI 369 (534)
T ss_pred HHhhheEECChHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444432222344444444443333
No 137
>PF05656 DUF805: Protein of unknown function (DUF805); InterPro: IPR008523 This entry is represented by Lactobacillus phage LBR48, DUF805. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; GO: 0016021 integral to membrane
Probab=38.98 E-value=2.2e+02 Score=23.52 Aligned_cols=18 Identities=33% Similarity=0.410 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHhhhhhcC
Q 007943 429 FIFSLVALALLVRRYYVA 446 (584)
Q Consensus 429 ~~~~~~~~~~i~~r~~~~ 446 (584)
+...+..++...+|.+.-
T Consensus 56 l~~~i~~lal~vRRlhD~ 73 (120)
T PF05656_consen 56 LLLFIPSLALTVRRLHDI 73 (120)
T ss_pred HHHHHHHHHHHhhhhhcC
Confidence 334444555555555533
No 138
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=38.72 E-value=4.2e+02 Score=28.46 Aligned_cols=30 Identities=7% Similarity=-0.073 Sum_probs=15.4
Q ss_pred cccccCCCCCchhHHHHHHHHHHHHHHHHH
Q 007943 287 GEEVKNPGRDIPIGLIGSMVITITVYCVLS 316 (584)
Q Consensus 287 a~E~k~p~r~~p~ai~~~~~~~~i~y~l~~ 316 (584)
++|.++.+|+=-|.+....+...+..+=..
T Consensus 22 ~~~~~~~~~t~wrsi~l~~~~sfl~~v~~s 51 (488)
T KOG2325|consen 22 SLSPLDERKTNWRSIYLALLNSFLVAVQFS 51 (488)
T ss_pred ccccccccCCchHhHHHHHHHHHHHhhhhe
Confidence 344444455555666666555554444333
No 139
>COG1272 Predicted membrane protein, hemolysin III homolog [General function prediction only]
Probab=37.31 E-value=3.7e+02 Score=25.53 Aligned_cols=69 Identities=16% Similarity=0.129 Sum_probs=42.8
Q ss_pred chhhHHHHHHHHHHHHHhhhhhccCCCCccccccccHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHH
Q 007943 483 IGYIVTVPVWFLATMGLQLTVKEARKPKMWGVPLLPWLPSACIAVNVFVMGSVDGQSFVRFMIWTFLLLVYYL 555 (584)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~y~ 555 (584)
....+.++.|.++...+.+.-..++++++++...+-.+.+.++...--+...++. ....+++.|.+.|-
T Consensus 116 ~~~~~~~iiW~lal~Gi~~kl~~~~~~r~ls~~~yl~mGw~~v~~~~~l~~~l~~----~~~~~l~~GGv~Ys 184 (226)
T COG1272 116 LGWILLGLIWGLALAGILFKLFFKKRFRKLSLVLYLAMGWLGLIVIKPLIAKLGL----IGLVLLALGGVLYS 184 (226)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhccCcCceeeehhhHHHHHHHHHHHHHHHHhCch----HHHHHHHHHhHHhe
Confidence 5566777777777766665555556677777776666666665555444444444 44556666777664
No 140
>PF09991 DUF2232: Predicted membrane protein (DUF2232); InterPro: IPR018710 This family of bacterial and eukaryotic proteins has no known fucntion; however this signature belongs to a Pfam Gx transporter clan.
Probab=37.04 E-value=4e+02 Score=25.89 Aligned_cols=97 Identities=15% Similarity=0.076 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCchhhhcccCccccchHHHHHHHHHHHHHHHhhcH-----HHHH
Q 007943 346 AKYIVALGALKGMTTVLLANVIGQARYFTHIGRTHMAPPFLAAINGKTGTPVNATVVMSLANSVVAFFTSL-----DVLA 420 (584)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~ardg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~~~~-----~~l~ 420 (584)
...++........+.........+.|++ .|.|.-.+.+.+.+ +.+.|.+.++...+..++....... +.+.
T Consensus 157 ~~~~~P~~~~i~~~~~~~~~~~l~~~il---~r~~~~~~~~~~~~-~~~lP~~~~~~~i~~~~~~l~~~~~~~~~~~~i~ 232 (290)
T PF09991_consen 157 IKRLFPALLIISALLMSLINYYLARRIL---RRLGIPIPPLPPFR-EWRLPRWLIWLLIVALALSLVGGGFGGSWLQIIG 232 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHcCCCCCCCCchH-HHhCcHHHHHHHHHHHHHHHHhcccchHHHHHHH
Confidence 3444444444444444444455555554 34443334444555 6788988887665544433332211 2333
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcC
Q 007943 421 NLLSISTLFIFSLVALALLVRRYYVA 446 (584)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~i~~r~~~~ 446 (584)
.-........|.+.-++++...-+++
T Consensus 233 ~Nl~~v~~~l~~~qGla~~~~~~~~~ 258 (290)
T PF09991_consen 233 LNLLIVLSFLFFIQGLAVIHFFLKRR 258 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33333344556666666665554444
No 141
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=36.97 E-value=34 Score=28.15 Aligned_cols=20 Identities=5% Similarity=0.271 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHhhhcccc
Q 007943 545 IWTFLLLVYYLFVALHASYD 564 (584)
Q Consensus 545 ~~~~i~~~~y~~~~~~~~~~ 564 (584)
.+.++.+++|+...|..+++
T Consensus 23 ~lvii~~i~yf~~~RpqkK~ 42 (106)
T PRK05585 23 PLVVFFAIFYFLIIRPQQKR 42 (106)
T ss_pred HHHHHHHHHHHHhccHHHHH
Confidence 34444555665554433333
No 142
>PF02699 YajC: Preprotein translocase subunit; InterPro: IPR003849 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins []. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone (SecB), ATPase (SecA), an integral membrane complex (SecY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. Other cytoplasmic/periplasmic proteins play a part in preprotein translocase activity, namely YidC and YajC []. The latter is bound in a complex to SecD and SecF, and plays a part in stabilising and regulating secretion through the SecYEG integral membrane component via SecA []. Homologues of the YajC gene have been found in a range of pathogenic and commensal microbes. Brucella abortis YajC- and SecD-like proteins were shown to stimulate a Th1 cell-mediated immune response in mice, and conferred protection when challenged with B.abortis []. Therefore, these proteins may have an antigenic role as well as a secretory one in virulent bacteria []. A number of previously uncharacterised "hypothetical" proteins also show similarity to E.coli YajC, suggesting that this family is wider than first thought []. More recently, the precise interactions between the E.coli SecYEG complex, SecD, SecF, YajC and YidC have been studied []. Rather than acting individually, the four proteins form a heterotetrameric complex and associate with the SecYEG heterotrimeric complex []. The SecF and YajC subunits link the complex to the integral membrane translocase. ; PDB: 2RDD_B.
Probab=36.63 E-value=35 Score=26.54 Aligned_cols=17 Identities=6% Similarity=0.467 Sum_probs=7.8
Q ss_pred HHHHHHHHHHhhhcccc
Q 007943 548 FLLLVYYLFVALHASYD 564 (584)
Q Consensus 548 ~i~~~~y~~~~~~~~~~ 564 (584)
++..++|++..|..+++
T Consensus 10 ~~~~i~yf~~~rpqkk~ 26 (82)
T PF02699_consen 10 IIFVIFYFLMIRPQKKQ 26 (82)
T ss_dssp HHHHHHHHHTHHHHHHH
T ss_pred HHHHHHhhheecHHHHH
Confidence 44455555544433333
No 143
>PF07760 DUF1616: Protein of unknown function (DUF1616); InterPro: IPR011674 This is a group of sequences from hypothetical archaeal proteins. The region in question is approximately 330 amino acid residues long.
Probab=36.49 E-value=4.3e+02 Score=26.06 Aligned_cols=31 Identities=10% Similarity=0.117 Sum_probs=17.0
Q ss_pred hhHHHHHHHHHHHHHhhhhhccCCCCccccc
Q 007943 485 YIVTVPVWFLATMGLQLTVKEARKPKMWGVP 515 (584)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (584)
+..+..+.++...+.+.|+++.+.+..|..+
T Consensus 90 ~~~l~~~t~~~~~~a~~rr~~~~~~~r~~~~ 120 (287)
T PF07760_consen 90 LISLSIFTLVLSIIAYIRRRRLPEEERFSVP 120 (287)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCcccccccc
Confidence 3345556666666666666554545444443
No 144
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=35.83 E-value=44 Score=24.18 Aligned_cols=19 Identities=11% Similarity=0.277 Sum_probs=8.8
Q ss_pred HHHHHHHHHHhhhcccchhh
Q 007943 548 FLLLVYYLFVALHASYDAAK 567 (584)
Q Consensus 548 ~i~~~~y~~~~~~~~~~~~~ 567 (584)
.+++++| .|+.++|.+..+
T Consensus 22 fiavi~~-ayr~~~K~~~d~ 40 (60)
T COG4736 22 FIAVIYF-AYRPGKKGEFDE 40 (60)
T ss_pred HHHHHHH-HhcccchhhHHH
Confidence 3344444 555555544433
No 145
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=35.16 E-value=5.6e+02 Score=26.99 Aligned_cols=94 Identities=12% Similarity=0.189 Sum_probs=65.6
Q ss_pred hhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcceeccccccccCcchhHHHHHHHHHHHHHhc
Q 007943 140 AYLRVELGDFVAYIAAGNILFEYVVSGASVARSWTSYFATLCNHDPGSFRIHVSSVAEDYSHLDPIAVIVSFFVCVGACL 219 (584)
Q Consensus 140 ~~~~~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (584)
..+++.+|+....+.+....++...+......+.++|++..++.- .+ ..+.+++.++...+...
T Consensus 265 ~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~~ki--sY--------------~~~v~i~~i~S~~ian~ 328 (427)
T PF05525_consen 265 QIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYFSELFPKI--SY--------------KVWVIIFTIFSFIIANL 328 (427)
T ss_pred HHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--Ch--------------HHHHHHHHHHHHHHHHh
Confidence 445678999999999999999999999999999999999988721 11 14555666677777778
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 007943 220 SMKGSSRFNSVATIVHIVILIFILITGLTQ 249 (584)
Q Consensus 220 g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 249 (584)
|.+..-++..-...+..-..+++++..+.+
T Consensus 329 Gl~~Ii~~s~PiL~~iYP~~IvLIll~l~~ 358 (427)
T PF05525_consen 329 GLDQIIKISVPILMFIYPVAIVLILLNLFD 358 (427)
T ss_pred CHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 877766655444444333444455544443
No 146
>PHA02898 virion envelope protein; Provisional
Probab=34.72 E-value=90 Score=24.36 Aligned_cols=21 Identities=10% Similarity=0.183 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHhhhcc
Q 007943 542 RFMIWTFLLLVYYLFVALHAS 562 (584)
Q Consensus 542 ~~~~~~~i~~~~y~~~~~~~~ 562 (584)
+.++++.+|.++|-.|+|+=+
T Consensus 53 Ilgivl~lG~~ifs~y~r~C~ 73 (92)
T PHA02898 53 ILAIILILGIIFFKGYNMFCG 73 (92)
T ss_pred HHHHHHHHHHHHHHHHhhhcC
Confidence 556777889999988886554
No 147
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=34.70 E-value=41 Score=23.10 Aligned_cols=18 Identities=11% Similarity=0.130 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHhhhcc
Q 007943 544 MIWTFLLLVYYLFVALHAS 562 (584)
Q Consensus 544 ~~~~~i~~~~y~~~~~~~~ 562 (584)
...+.+|+++| .|.++++
T Consensus 18 ~~~~F~gi~~w-~~~~~~k 35 (49)
T PF05545_consen 18 FFVFFIGIVIW-AYRPRNK 35 (49)
T ss_pred HHHHHHHHHHH-HHcccch
Confidence 33444455555 4443333
No 148
>PF03806 ABG_transport: AbgT putative transporter family; InterPro: IPR004697 The p-aminobenzoyl-glutamate transporter family includes two putative transporters, the AbgT protein of Escherichia coli and MtrF of Neisseria gonorrhoeae. AbgT expression is apparently cryptic in wild type cells, but when present on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs []. p-Aminobenzoate is a constituent of, and a precursor for, the biosynthesis of folic acid. It is not currently known if AbgT is naturally involved in transporting p-aminobenzoyl-glutamate, or if it only becomes involved when under altered regulation. MtrF is an inner membrane protein which, together with the MtrCDE efflux pump, is required for high-level resistance to hydrophobic antimicrobial agents in N. gonorrhoeae []. Its role in this process is not known, but it has been suggested that it may be a component of the efflux pump which is dispensible for basal activity, but required for high-level activity [].
Probab=33.96 E-value=3.2e+02 Score=29.31 Aligned_cols=99 Identities=11% Similarity=0.104 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHHHhhhhccccCCchhhhHHHHhchHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHccCCC
Q 007943 112 LISGISALLSVLCYTEFSVELPVAGGSFAYLRVELGDFVAYIAAGNILFEYVV------SGASVARSWTSYFATLCNHDP 185 (584)
Q Consensus 112 ii~~l~~~~~~~~~~el~~~~P~~Gg~y~~~~~~~g~~~g~~~g~~~~l~~~~------~~a~~~~~~~~~~~~~~~~~~ 185 (584)
.+..++....+..|+-.+.++.+..-......+.+....++++-.....+++. .....+...++.+++.= .
T Consensus 301 piI~l~F~i~GivYG~~sG~iks~~Dv~~~M~~~m~~m~~yiVL~F~aaQFia~F~~Snlg~i~Av~GA~~L~~~~-~-- 377 (502)
T PF03806_consen 301 PIIFLFFLIPGIVYGIASGTIKSDKDVVKMMSKGMKSMAPYIVLAFFAAQFIAYFNWSNLGTILAVKGAEFLKSLG-L-- 377 (502)
T ss_pred HHHHHHHHHHHHHHhhhhceecCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhcC-C--
Confidence 34445566789999999999998888888888888877777665433333322 22333444455554321 0
Q ss_pred CCcceeccccccccCcchhHHHHHHHHHHHHHhccchhHHHHH
Q 007943 186 GSFRIHVSSVAEDYSHLDPIAVIVSFFVCVGACLSMKGSSRFN 228 (584)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 228 (584)
+ ...+.+.++++.+.+|.+=...++|..
T Consensus 378 ~---------------~~~l~i~fill~a~iNLfi~S~SaKWa 405 (502)
T PF03806_consen 378 P---------------GIPLIIGFILLTAFINLFIGSASAKWA 405 (502)
T ss_pred C---------------cHHHHHHHHHHHHHHHHhhhcchhhHH
Confidence 0 115566778888899987556566553
No 149
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=33.08 E-value=4.2e+02 Score=27.17 Aligned_cols=10 Identities=30% Similarity=0.624 Sum_probs=3.9
Q ss_pred HHHHHHHhhh
Q 007943 433 LVALALLVRR 442 (584)
Q Consensus 433 ~~~~~~i~~r 442 (584)
+..++++..|
T Consensus 12 ii~~G~~~~~ 21 (385)
T PF03547_consen 12 IILLGYLLGR 21 (385)
T ss_pred HHHHHHHHHH
Confidence 3334444333
No 150
>PF01578 Cytochrom_C_asm: Cytochrome C assembly protein; InterPro: IPR002541 This entry consists of various proteins involved in cytochrome c assembly from mitochondria and bacteria; CycK from Rhizobium leguminosarum [], CcmC from Escherichia coli and Paracoccus denitrificans [, ] and orf240 from Triticum aestivum (Wheat) mitochondria []. The members of this family are probably integral membrane proteins with six predicted transmembrane helices that may comprise the membrane component of an ABC (ATP binding cassette) transporter complex. This transporter may be necessary for transport of some component needed for cytochrome c assembly. One member, R. leguminosarum CycK, contains a putative haem-binding motif []. Wheat orf240 also contains a putative haem-binding motif and is a proposed ABC transporter with c-type haem as its proposed substrate []. However it seems unlikely that all members of this family transport haem or c-type apocytochromes because P. denitrificans CcmC transports neither [].; GO: 0006461 protein complex assembly, 0008535 respiratory chain complex IV assembly, 0016020 membrane
Probab=32.92 E-value=3.8e+02 Score=24.89 Aligned_cols=19 Identities=16% Similarity=0.265 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 007943 422 LLSISTLFIFSLVALALLV 440 (584)
Q Consensus 422 ~~~~~~~~~~~~~~~~~i~ 440 (584)
......+.++.+....++.
T Consensus 4 ~~~~l~~~~~~~~~~~~~~ 22 (214)
T PF01578_consen 4 LYESLLFLAWLLALIYLFL 22 (214)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555544
No 151
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=32.57 E-value=6.5e+02 Score=26.97 Aligned_cols=24 Identities=4% Similarity=-0.144 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccc
Q 007943 541 VRFMIWTFLLLVYYLFVALHASYD 564 (584)
Q Consensus 541 ~~~~~~~~i~~~~y~~~~~~~~~~ 564 (584)
..+++..++..+.|+.|++|+++.
T Consensus 471 ~~~~~~~i~~~~~~~~~~~~~~~~ 494 (496)
T PRK15238 471 WMIGGPVFFSILAWIIYQNYEKKM 494 (496)
T ss_pred HHHHHHHHHHHHHHHHHHhhchhc
Confidence 344556666677777877777654
No 152
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=32.47 E-value=5.8e+02 Score=26.38 Aligned_cols=76 Identities=14% Similarity=0.274 Sum_probs=53.1
Q ss_pred hhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcceeccccccccCcchhHHHHHHHHHHHHHhc
Q 007943 140 AYLRVELGDFVAYIAAGNILFEYVVSGASVARSWTSYFATLCNHDPGSFRIHVSSVAEDYSHLDPIAVIVSFFVCVGACL 219 (584)
Q Consensus 140 ~~~~~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (584)
+.+++.+|+.-+.+.+....++...+.......++++++...+. ..+ ..+.+...+....+...
T Consensus 259 ~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~~k--~~y--------------~~~v~~~~l~s~~ia~~ 322 (378)
T TIGR00796 259 AYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSEYFHKLVPK--LSY--------------KTWVIVFTLFSFIVANL 322 (378)
T ss_pred HHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCH--------------HHHHHHHHHHHHHHHHh
Confidence 56788999999999999999999888888888999999888642 111 13344444455555556
Q ss_pred cchhHHHHHHHH
Q 007943 220 SMKGSSRFNSVA 231 (584)
Q Consensus 220 g~~~~~~~~~~~ 231 (584)
|.+..-++..-.
T Consensus 323 Gl~~Ii~~~~Pv 334 (378)
T TIGR00796 323 GLTQIISISIPV 334 (378)
T ss_pred CHHHHHHHHHHH
Confidence 766665544333
No 153
>COG3247 HdeD Uncharacterized conserved protein [Function unknown]
Probab=32.31 E-value=4e+02 Score=24.41 Aligned_cols=36 Identities=3% Similarity=0.071 Sum_probs=20.8
Q ss_pred ccccchHHHHHHHHHHHHHHHhhcHHHHHHHHHHHH
Q 007943 392 KTGTPVNATVVMSLANSVVAFFTSLDVLANLLSIST 427 (584)
Q Consensus 392 ~~~~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~~ 427 (584)
..+.|.+...+.+++.+++..+.-++-..+......
T Consensus 14 ~l~~~w~~~l~~Gv~lii~Gl~~l~~P~~s~~~l~~ 49 (185)
T COG3247 14 MLKKPWWWVLLLGVLLIILGLLALFNPAISTVALVY 49 (185)
T ss_pred hhcCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 345677777878887777666644443333333333
No 154
>PF10951 DUF2776: Protein of unknown function (DUF2776); InterPro: IPR021240 This bacterial family of proteins has no known function.
Probab=31.79 E-value=1.7e+02 Score=28.66 Aligned_cols=20 Identities=20% Similarity=0.227 Sum_probs=11.7
Q ss_pred CCCccccccccHHHHHHHHH
Q 007943 508 KPKMWGVPLLPWLPSACIAV 527 (584)
Q Consensus 508 ~~~~~~~~~~p~~~~~~~~~ 527 (584)
-+..-|.|+.|++..+.-++
T Consensus 284 f~LAnRIPlIPV~TaL~CLF 303 (347)
T PF10951_consen 284 FKLANRIPLIPVLTALACLF 303 (347)
T ss_pred cchhccCCchHHHHHHHHHH
Confidence 34445778888776644333
No 155
>PF11998 DUF3493: Protein of unknown function (DUF3493); InterPro: IPR021883 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 79 to 331 amino acids in length.
Probab=31.19 E-value=2.1e+02 Score=21.82 Aligned_cols=40 Identities=15% Similarity=0.077 Sum_probs=32.0
Q ss_pred hhhhhcccccCCCCCchhHHHHHHHHHHHHHHHHHHHHHh
Q 007943 282 GVATLGEEVKNPGRDIPIGLIGSMVITITVYCVLSATLCL 321 (584)
Q Consensus 282 ~~~~~a~E~k~p~r~~p~ai~~~~~~~~i~y~l~~~~~~~ 321 (584)
.-..+-+|++.|=|.+.+.+..+...++.+..++...=..
T Consensus 5 ~~~rLraE~~aPfR~lR~f~y~a~~aSa~iG~~i~~~rl~ 44 (75)
T PF11998_consen 5 QYARLRAEAQAPFRGLRRFFYGAFGASAGIGLFIFLFRLI 44 (75)
T ss_pred HHHHHHHHHHCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455678999999999999999999988887777666444
No 156
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=30.86 E-value=55 Score=27.65 Aligned_cols=19 Identities=21% Similarity=0.329 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHhhhcc
Q 007943 544 MIWTFLLLVYYLFVALHAS 562 (584)
Q Consensus 544 ~~~~~i~~~~y~~~~~~~~ 562 (584)
+++.++.+++|++.+++++
T Consensus 76 GvIg~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 76 GVIGIILLISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 3334445666656554444
No 157
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=30.80 E-value=50 Score=26.60 Aligned_cols=39 Identities=8% Similarity=0.230 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHhhhcccchhhhhhHHHhhcccchhh
Q 007943 544 MIWTFLLLVYYLFVALHASYDAAKETDRAAEASNMEAVV 582 (584)
Q Consensus 544 ~~~~~i~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 582 (584)
....++..+.||...|..+++..+..+...+-.+-|||+
T Consensus 13 l~~vl~~~ifyFli~RPQrKr~K~~~~ml~sL~kGD~Vv 51 (97)
T COG1862 13 LPLVLIFAIFYFLIIRPQRKRMKEHQELLNSLKKGDEVV 51 (97)
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhccCCCEEE
Confidence 334444555565444444444444444444334444444
No 158
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=30.69 E-value=63 Score=32.04 Aligned_cols=31 Identities=16% Similarity=0.410 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcccchhhhh
Q 007943 539 SFVRFMIWTFLLLVYYLFVALHASYDAAKET 569 (584)
Q Consensus 539 ~~~~~~~~~~i~~~~y~~~~~~~~~~~~~~~ 569 (584)
+.+.+++++++.+++|++++.||++++.+..
T Consensus 261 SiiaIliIVLIMvIIYLILRYRRKKKmkKKl 291 (299)
T PF02009_consen 261 SIIAILIIVLIMVIIYLILRYRRKKKMKKKL 291 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 3444455556667777776666655554443
No 159
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=29.05 E-value=6.3e+02 Score=25.66 Aligned_cols=36 Identities=14% Similarity=0.328 Sum_probs=24.5
Q ss_pred hhhhcccccCCCCC----chhHHHHHHHHHHHHHHHHHHH
Q 007943 283 VATLGEEVKNPGRD----IPIGLIGSMVITITVYCVLSAT 318 (584)
Q Consensus 283 ~~~~a~E~k~p~r~----~p~ai~~~~~~~~i~y~l~~~~ 318 (584)
....++++.++++| -|+|+.++++.+...-++...+
T Consensus 28 L~~~~~~ig~~~~D~~~~T~~al~~tll~alp~pl~~~~~ 67 (340)
T PF12794_consen 28 LERIAKRIGKVRQDSFSHTPRALLLTLLLALPLPLLLLAI 67 (340)
T ss_pred HHHHHHHcCCccCCCchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666655 8899999988877665554444
No 160
>KOG1619 consensus Cytochrome b [Energy production and conversion]
Probab=28.52 E-value=1.1e+02 Score=29.13 Aligned_cols=27 Identities=19% Similarity=0.448 Sum_probs=18.5
Q ss_pred CCCCccccccccHHHHHHHHHHHHHHh
Q 007943 507 RKPKMWGVPLLPWLPSACIAVNVFVMG 533 (584)
Q Consensus 507 ~~~~~~~~~~~p~~~~~~~~~~~~~~~ 533 (584)
..+.++|..++|+-..+++...+....
T Consensus 152 g~~~~~Rs~lmP~H~~~Gl~~f~lai~ 178 (245)
T KOG1619|consen 152 GSPESYRSRLMPWHVFLGLAIFILAIV 178 (245)
T ss_pred CCCccHHhhhhhHHHHHHHHHHHHHHH
Confidence 445578888888888777766555443
No 161
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=28.16 E-value=1.3e+02 Score=26.53 Aligned_cols=65 Identities=15% Similarity=0.181 Sum_probs=38.4
Q ss_pred HHHHHHHHHhhhhhhHHccHHhHhhccC---c-hHHHHHHHHHHHHHHHHHHHHhhhhccc-c-CCchhhhH
Q 007943 77 DLIWFGIGAVMGAGIFVLTGEAARNFAG---P-AVIISYLISGISALLSVLCYTEFSVELP-V-AGGSFAYL 142 (584)
Q Consensus 77 ~~~~~~~~~~ig~gi~~~~~~~~~~~~G---~-~~~~~~ii~~l~~~~~~~~~~el~~~~P-~-~Gg~y~~~ 142 (584)
..++.++=...|.+.|.....+... .. | .+.+.--.+++..-+++++|+-|++.+- . .|+..-|-
T Consensus 65 m~~~~GiP~~lG~~~f~~~y~l~~~-~~~dvP~~~~~~~S~~~Fg~gllGisYGilSaSWD~~r~GSllG~~ 135 (153)
T PF11947_consen 65 MAVFVGIPTALGVAVFVVFYYLKSR-QIVDVPPWAVLLVSLVFFGLGLLGISYGILSASWDPEREGSLLGWE 135 (153)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHhc-cccccCchHHHHHHHHHHHHHHHhhhhhhcccccCCCCCCCcccHH
Confidence 3344444444566666666555543 22 2 2344444444556668999999999885 3 67766553
No 162
>PF07226 DUF1422: Protein of unknown function (DUF1422); InterPro: IPR009867 This family consists of several hypothetical bacterial proteins of around 120 residues in length. The function of this family is unknown.
Probab=27.88 E-value=3.6e+02 Score=22.46 Aligned_cols=47 Identities=21% Similarity=0.200 Sum_probs=23.1
Q ss_pred cccHHHHHHHHHHHHHHhcC---Ch--hhHHHHHHHHHHHHHHHHHHhhhcc
Q 007943 516 LLPWLPSACIAVNVFVMGSV---DG--QSFVRFMIWTFLLLVYYLFVALHAS 562 (584)
Q Consensus 516 ~~p~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~i~~~~y~~~~~~~~ 562 (584)
..|.+...+.++.++..... .+ ...-.+-.++.+.++.|..++.+.+
T Consensus 63 g~P~~a~acFflG~f~ySA~vraqyPeiGSNFfp~il~l~L~~Wi~~kl~~~ 114 (117)
T PF07226_consen 63 GTPKLALACFFLGLFGYSAFVRAQYPEIGSNFFPSILCLILVFWIGYKLGFR 114 (117)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHhhh
Confidence 45666666666555544321 11 1111234455556677766654443
No 163
>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]
Probab=27.46 E-value=6.3e+02 Score=25.16 Aligned_cols=40 Identities=18% Similarity=0.253 Sum_probs=21.8
Q ss_pred cchHHHHHHHHHHHHHHHh--hcHHHHHHHHHHHHHHHHHHH
Q 007943 395 TPVNATVVMSLANSVVAFF--TSLDVLANLLSISTLFIFSLV 434 (584)
Q Consensus 395 ~P~~ai~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~ 434 (584)
.|..+..+..+++.+-..+ ...|.+........++.|..+
T Consensus 97 ~p~~al~fgl~L~~~g~~~l~~~vn~laa~l~~~gi~~Yv~v 138 (304)
T COG0109 97 SPREALAFGLVLGVAGFSLLWFLVNLLAAVLGLFGIFFYVVV 138 (304)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4667777777766543333 233455555555555555443
No 164
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=26.77 E-value=3.6e+02 Score=23.09 Aligned_cols=21 Identities=10% Similarity=0.192 Sum_probs=11.8
Q ss_pred ChhhHHHHHHHHHHHHHHHHH
Q 007943 536 DGQSFVRFMIWTFLLLVYYLF 556 (584)
Q Consensus 536 ~~~~~~~~~~~~~i~~~~y~~ 556 (584)
++..++.....++.|+++-..
T Consensus 85 ~~~~~i~g~~~~~~G~~~i~l 105 (136)
T PF08507_consen 85 SILSIIIGLLLFLVGVIYIIL 105 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 454555555666666665443
No 165
>PRK10297 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIC; Provisional
Probab=26.47 E-value=7e+02 Score=26.54 Aligned_cols=31 Identities=6% Similarity=0.211 Sum_probs=22.9
Q ss_pred HhhhHHHHHHHHhcCCCchhhhcccC-ccccc
Q 007943 366 VIGQARYFTHIGRTHMAPPFLAAING-KTGTP 396 (584)
Q Consensus 366 ~~~~sR~l~~~ardg~lP~~~~~~~~-~~~~P 396 (584)
+.+=||-..+++|-...|..|.--.| -+|.|
T Consensus 319 l~sKs~~~k~lgk~sl~P~lFNINEPiiFGlP 350 (452)
T PRK10297 319 IASRRADYRQVAKLALPSGIFQINEPILFGLP 350 (452)
T ss_pred HHhccHHHHHHHHHHcccccccCCccHHhccH
Confidence 55678889999999999999876332 14445
No 166
>PF12666 PrgI: PrgI family protein; InterPro: IPR024414 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 116 and 146 amino acids in length. PrgI is found encoded on plasmids of Enterococcus faecalis, its function is not known.
Probab=26.44 E-value=2.1e+02 Score=22.60 Aligned_cols=31 Identities=32% Similarity=0.565 Sum_probs=24.0
Q ss_pred ccccccccCHHHHHHHHHHHhhhhhhHHccH
Q 007943 66 EHEMKKNLNWWDLIWFGIGAVMGAGIFVLTG 96 (584)
Q Consensus 66 ~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~ 96 (584)
+++.-..+|.+|+..++.+..++.|.+....
T Consensus 10 e~ki~~GlT~RQl~~l~~~~~~~~~~~~~~~ 40 (93)
T PF12666_consen 10 EEKIFFGLTLRQLICLAIGALVGVGVYLLLW 40 (93)
T ss_pred cchhccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445567899999999999998888775543
No 167
>PF11174 DUF2970: Protein of unknown function (DUF2970); InterPro: IPR021344 This short family is conserved in Proteobacteria. The function is not known.
Probab=25.58 E-value=1.6e+02 Score=20.99 Aligned_cols=44 Identities=11% Similarity=0.295 Sum_probs=26.7
Q ss_pred HHHHHHHHHhhchhhhhhhhcccccCCCCCchhHHHHHHHHHHHHHH
Q 007943 267 LKASAVLFFAYVGFDGVATLGEEVKNPGRDIPIGLIGSMVITITVYC 313 (584)
Q Consensus 267 ~~~~~~~~~~~~G~e~~~~~a~E~k~p~r~~p~ai~~~~~~~~i~y~ 313 (584)
+..+-.+.|+|.|..+-...-++.++.+ |...+..-++.+++++
T Consensus 2 ~~~~~sVl~af~GVqs~~~~e~Df~~~~---p~~~Ii~gii~~~~fV 45 (56)
T PF11174_consen 2 WQVVKSVLWAFFGVQSSKNRERDFAQGS---PVHFIIVGIILAALFV 45 (56)
T ss_pred HHHHHHHHHHHhCcCcchhHHHHHHcCC---CchHHHHHHHHHHHHH
Confidence 3455677899999998777777766532 4444444444333333
No 168
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=24.19 E-value=8.2e+02 Score=25.40 Aligned_cols=18 Identities=17% Similarity=0.351 Sum_probs=8.7
Q ss_pred ccccchHHHHHHHHHHHH
Q 007943 392 KTGTPVNATVVMSLANSV 409 (584)
Q Consensus 392 ~~~~P~~ai~~~~~~~~~ 409 (584)
|++.+.+.+.+..+++.+
T Consensus 63 r~~~~~~~l~~~~l~~~~ 80 (400)
T PF03825_consen 63 RFGSAKRILALLSLLSAL 80 (400)
T ss_pred HhhhHHHHHHHHHHHHHH
Confidence 445555555444444433
No 169
>PHA03048 IMV membrane protein; Provisional
Probab=24.12 E-value=2.4e+02 Score=22.11 Aligned_cols=21 Identities=10% Similarity=0.006 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHhhhcc
Q 007943 542 RFMIWTFLLLVYYLFVALHAS 562 (584)
Q Consensus 542 ~~~~~~~i~~~~y~~~~~~~~ 562 (584)
+.++++.+|.++|-.|+|+=.
T Consensus 52 Ilgivl~lG~~ifsmy~r~C~ 72 (93)
T PHA03048 52 VLGIVMTIGMLIYSMWGRYCT 72 (93)
T ss_pred HHHHHHHHHHHHHHHHhcccC
Confidence 557778889999988886554
No 170
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=22.52 E-value=9.3e+02 Score=25.42 Aligned_cols=49 Identities=10% Similarity=0.163 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhhhHHHHHHHHhcCCCchhhhcccCccccchHHHHHHHHHHHHHHHhh
Q 007943 357 GMTTVLLANVIGQARYFTHIGRTHMAPPFLAAINGKTGTPVNATVVMSLANSVVAFFT 414 (584)
Q Consensus 357 ~~~~~~~~~~~~~sR~l~~~ardg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~~ 414 (584)
+.++++....|+.|+.+..+=-|+. |||.=.| ..+++++++.+++.+..
T Consensus 67 G~i~s~f~i~YG~sKf~~G~~sDr~--------npr~fm~-~gLilsai~nil~Gfs~ 115 (448)
T COG2271 67 GILGSAFSITYGVSKFVMGVLSDRS--------NPRYFMA-FGLILSAIVNILFGFSP 115 (448)
T ss_pred HHHHHHHHHHHHHHHHHhhhhcccC--------CCceeeh-HHHHHHHHHHHHHhhhh
Confidence 3455666778899999988888864 4443333 33566666666555443
No 171
>PF12263 DUF3611: Protein of unknown function (DUF3611); InterPro: IPR022051 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 180 and 205 amino acids in length. There are two completely conserved residues (W and G) that may be functionally important.
Probab=22.23 E-value=5.8e+02 Score=23.31 Aligned_cols=50 Identities=14% Similarity=0.153 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhhchhhhhhhhc--ccccCCC-CCchhHHHHHHHHHHHHHHHH
Q 007943 266 ILKASAVLFFAYVGFDGVATLG--EEVKNPG-RDIPIGLIGSMVITITVYCVL 315 (584)
Q Consensus 266 ~~~~~~~~~~~~~G~e~~~~~a--~E~k~p~-r~~p~ai~~~~~~~~i~y~l~ 315 (584)
+.......+|+|--.-.+-.+. ++.++|+ .++.|.+..++.+..+--++.
T Consensus 66 l~~l~~si~~~fry~Rlar~L~~~~~~~~P~k~~~~~~l~~Gl~~nl~Gmllt 118 (183)
T PF12263_consen 66 LVALFFSIFWSFRYTRLARRLRSPNPAKRPSKADVVRLLRIGLIINLVGMLLT 118 (183)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555554333333332 2333443 345666666666554443333
No 172
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=22.20 E-value=6.1e+02 Score=23.17 Aligned_cols=110 Identities=13% Similarity=0.053 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHhhhhccccCCCcchhhHHHHHHHHHHHHHhhhhhccCCCCccccccccHHHHHHHHHHHHHHhcC-
Q 007943 457 LIVFLALIISSSIASSAYWATSDNGWIGYIVTVPVWFLATMGLQLTVKEARKPKMWGVPLLPWLPSACIAVNVFVMGSV- 535 (584)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~- 535 (584)
.+..-.+.+.+++..+.--+...-|.+...+.+++........+++..+...+++-|-+.+.++........+|+....
T Consensus 102 Ll~lg~~aLlsgitaff~~nA~~~GlItlll~a~vgGfamy~my~y~yr~~ad~sqr~~~~K~~lv~~~sm~lWi~v~i~ 181 (226)
T COG4858 102 LLFLGAMALLSGITAFFQKNAQVYGLITLLLTAVVGGFAMYIMYYYAYRMRADNSQRPGTWKYLLVAVLSMLLWIAVMIA 181 (226)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHhhhHHHHHHHHHHHHhhcccccCCchHHHHHHHHHHHHHHHHHHHH
Q ss_pred --------ChhhHHHHHHHHHHHHHHHHHHhhhcccchhh
Q 007943 536 --------DGQSFVRFMIWTFLLLVYYLFVALHASYDAAK 567 (584)
Q Consensus 536 --------~~~~~~~~~~~~~i~~~~y~~~~~~~~~~~~~ 567 (584)
|. ..-.+...++-++++-+-|..+++++.+.
T Consensus 182 t~~lPtslN~-~L~pi~l~IiGav~lalRfylkkk~NIqs 220 (226)
T COG4858 182 TVFLPTSLNP-QLPPIALTIIGAVILALRFYLKKKKNIQS 220 (226)
T ss_pred HhhCCCcCCc-CCchHHHHHHHHHHHHHHHHHHHhhcccc
No 173
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=21.39 E-value=1e+02 Score=21.43 Aligned_cols=13 Identities=15% Similarity=-0.018 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHh
Q 007943 546 WTFLLLVYYLFVA 558 (584)
Q Consensus 546 ~~~i~~~~y~~~~ 558 (584)
..++++.+.-..+
T Consensus 13 ~~lLg~~I~~~~K 25 (50)
T PF12606_consen 13 MGLLGLSICTTLK 25 (50)
T ss_pred HHHHHHHHHHHhh
Confidence 3344555544433
No 174
>KOG2736 consensus Presenilin [Signal transduction mechanisms]
Probab=21.30 E-value=1.6e+02 Score=29.95 Aligned_cols=20 Identities=30% Similarity=0.115 Sum_probs=9.0
Q ss_pred cCchHHHHHHHHHHHHHHHH
Q 007943 103 AGPAVIISYLISGISALLSV 122 (584)
Q Consensus 103 ~G~~~~~~~ii~~l~~~~~~ 122 (584)
+-|+.++....|.++++...
T Consensus 370 ALPALPisI~~G~iFYF~t~ 389 (406)
T KOG2736|consen 370 ALPALPISITFGLIFYFSTR 389 (406)
T ss_pred cCcCCchHHHHHHHHHHHHH
Confidence 44444444444444444433
No 175
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=21.25 E-value=9.6e+02 Score=25.12 Aligned_cols=74 Identities=11% Similarity=0.221 Sum_probs=55.2
Q ss_pred hhhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcceeccccccccCcchhHHHHHHHHHHHHHh
Q 007943 139 FAYLRVELGDFVAYIAAGNILFEYVVSGASVARSWTSYFATLCNHDPGSFRIHVSSVAEDYSHLDPIAVIVSFFVCVGAC 218 (584)
Q Consensus 139 y~~~~~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (584)
-.++.+.||+.-..+.|....++...+........++|++..++.-. ...+.+++.+...++.-
T Consensus 266 ~~~s~~~fG~~G~~lL~~iv~lACLTTaiGLi~a~aefF~~~~p~~S----------------Y~~~v~if~i~sflvan 329 (431)
T COG1114 266 SAYSQHLFGSYGSILLGLIVFLACLTTAVGLIVACAEFFSKLVPKLS----------------YKTWVIIFTLISFLVAN 329 (431)
T ss_pred HHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc----------------HHHHHHHHHHHHHHHHH
Confidence 35567899999999999999999999999999999999999886211 11455566666666666
Q ss_pred ccchhHHHHH
Q 007943 219 LSMKGSSRFN 228 (584)
Q Consensus 219 ~g~~~~~~~~ 228 (584)
.|.+..-++.
T Consensus 330 ~GL~~Ii~is 339 (431)
T COG1114 330 LGLEQIIKIS 339 (431)
T ss_pred hhHHHHHHHH
Confidence 7766655544
No 176
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=20.92 E-value=1.4e+03 Score=27.48 Aligned_cols=21 Identities=10% Similarity=0.167 Sum_probs=13.4
Q ss_pred ccccchHHHHHHHHHHHHHHH
Q 007943 392 KTGTPVNATVVMSLANSVVAF 412 (584)
Q Consensus 392 ~~~~P~~ai~~~~~~~~~~~~ 412 (584)
+.-+|..+.+++.+++++..+
T Consensus 7 ~~~~p~~~~~~~~~~~~~~l~ 27 (1094)
T PRK02983 7 RRWVPAAAGWTVGVIATLSLL 27 (1094)
T ss_pred cchhHHHHHHHHHHHHHHHHH
Confidence 345677777777777654443
No 177
>KOG3659 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=20.82 E-value=1.1e+03 Score=25.85 Aligned_cols=113 Identities=17% Similarity=0.231 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHhhccc--ccCCCCCCCCC-----chhHHHHHHHHHHHhh
Q 007943 205 IAVIVSFFVCVGACLSMKGSSRFNSVATIVHIVILIFILITGLTQA--NTANYAIFAPN-----GVRGILKASAVLFFAY 277 (584)
Q Consensus 205 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~-----g~~~~~~~~~~~~~~~ 277 (584)
...++.+++......|.|..+|+..+++..-.+++.++.+-++... +.....-..|+ ..+.+.-+...++++.
T Consensus 257 c~~lv~~liyf~~~kG~kssGKvv~vtallPy~Il~illirgl~l~ga~~g~~y~~~~~~~kl~~~~vW~dAAtqiffsl 336 (629)
T KOG3659|consen 257 CLVLVWLLIYFSLWKGVKSSGKVVWVTALLPYIILLILLVRGLTLPGAKNGIQYYLTPDIEKLKEPSVWIDAATQIFFSL 336 (629)
T ss_pred HHHHHHHHHHHHHhccccccceEEeeehhhHHHHHHHHHHhcccccccccchhheecccHHHHhhHHHHHHHHHHHHhhc
Confidence 3344444555666789999999866655544333333333232111 11111111121 1234555666666665
Q ss_pred c-hhhhhhhhcccccCCCCCchhHHHHHHHHHHHHHHHHHHH
Q 007943 278 V-GFDGVATLGEEVKNPGRDIPIGLIGSMVITITVYCVLSAT 318 (584)
Q Consensus 278 ~-G~e~~~~~a~E~k~p~r~~p~ai~~~~~~~~i~y~l~~~~ 318 (584)
. |+.....++.-.|- +.|.-|-.+...++....+++...+
T Consensus 337 g~GfG~L~AfaSyn~F-~NNc~rDAll~S~in~~ts~~sgfv 377 (629)
T KOG3659|consen 337 GPGFGVLIAFASYNKF-HNNCYRDALLTSIINCLTSFLSGFV 377 (629)
T ss_pred Cccchhhhhhhhhccc-ccchhhhhHHHHHHHHHHHHHHHHH
Confidence 4 88888888776654 3444444444444555555544444
No 178
>PRK11383 hypothetical protein; Provisional
Probab=20.68 E-value=5.6e+02 Score=22.21 Aligned_cols=102 Identities=10% Similarity=-0.001 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhcCCCCCc---cchhHHHHHHHHHHHHHhHhhhhcc
Q 007943 401 VVMSLANSVVAFFTSLDVLANLLSISTL-FIFSLVALALLVRRYYVAGETSE---CDQKKLIVFLALIISSSIASSAYWA 476 (584)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~i~~r~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (584)
|+..+.+++..+++-.+.-..+.-=++. ..+++...+.+...|..+|.... ...+.-.+....++...++....|+
T Consensus 17 w~al~~g~~~y~iGLwnA~~~LsEKGyY~~vl~lglF~avs~QK~vRD~~egi~vt~~f~~~cw~a~l~~i~LL~iGLwN 96 (145)
T PRK11383 17 WIALVGGIVTYLLGLWNAEMQLNEKGYYFAVLVLGLFSAASYQKTVRDKYEGIPTTSIYYMTCLTVFIISVALLMVGLWN 96 (145)
T ss_pred HHHHHHHHHHHHHHHhhcccccCcccHHHHHHHHHHHHHHHHHHHHhhcccCCChhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4444444444444444443333333332 33444444555555544443222 2244445555666666667777777
Q ss_pred ccC-CCcchhhHHHHHHHHHHHHHhhh
Q 007943 477 TSD-NGWIGYIVTVPVWFLATMGLQLT 502 (584)
Q Consensus 477 ~~~-~~~~~~~~~~~~~~~~~~~~~~~ 502 (584)
..- ...-+++.++...-++..+-.-.
T Consensus 97 A~l~lsEKGfY~~af~lsLFgai~vQK 123 (145)
T PRK11383 97 ATLLLSEKGFYGLAFFLSLFGAVAVQK 123 (145)
T ss_pred CCcchhhhhHHHHHHHHHHHHHHHHHh
Confidence 653 34445566666555555554433
Done!