Query 007943
Match_columns 584
No_of_seqs 255 out of 2964
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 14:18:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007943.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007943hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 100.0 2.3E-52 7.7E-57 443.0 40.8 420 67-565 4-435 (445)
2 3gia_A Uncharacterized protein 100.0 4E-50 1.4E-54 425.6 39.4 364 69-447 4-371 (444)
3 4djk_A Probable glutamate/gamm 100.0 1.3E-47 4.6E-52 413.6 41.6 374 65-454 5-405 (511)
4 2jln_A MHP1; hydantoin, transp 99.3 3.9E-09 1.3E-13 111.9 32.7 284 69-376 23-329 (501)
5 2xq2_A Sodium/glucose cotransp 98.8 2.7E-05 9.2E-10 84.2 38.2 283 70-373 48-377 (593)
6 3dh4_A Sodium/glucose cotransp 98.7 9.3E-05 3.2E-09 78.9 37.2 288 70-381 19-353 (530)
7 2a65_A Leutaa, Na(+):neurotran 98.1 0.0015 5.2E-08 68.4 28.2 240 74-314 10-292 (519)
8 4ain_A Glycine betaine transpo 96.1 1.2 4E-05 46.3 23.2 24 69-92 92-115 (539)
9 2wsw_A BCCT family betaine/car 95.8 2.2 7.5E-05 44.1 29.4 25 69-93 87-111 (509)
10 4djk_A Probable glutamate/gamm 78.1 24 0.00082 36.4 13.6 63 498-561 389-468 (511)
11 2l2t_A Receptor tyrosine-prote 34.5 36 0.0012 22.0 3.0 16 548-563 25-40 (44)
12 2ks1_B Epidermal growth factor 32.4 40 0.0014 21.8 2.9 16 548-563 26-41 (44)
13 2knc_B Integrin beta-3; transm 30.4 39 0.0013 25.0 3.1 16 543-558 18-33 (79)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=100.00 E-value=2.3e-52 Score=443.00 Aligned_cols=420 Identities=19% Similarity=0.286 Sum_probs=358.4
Q ss_pred cccccccCHHHHHHHHHHHhhhhhhHHccHHhHhhccCchHHHHHHHHHHHHHHHHHHHHhhhhccccCCchhhhHHHHh
Q 007943 67 HEMKKNLNWWDLIWFGIGAVMGAGIFVLTGEAARNFAGPAVIISYLISGISALLSVLCYTEFSVELPVAGGSFAYLRVEL 146 (584)
Q Consensus 67 ~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ii~~l~~~~~~~~~~el~~~~P~~Gg~y~~~~~~~ 146 (584)
++.||+++.++..++.++.++|+|+|..++.. .. +||..+++|+++++++++.+++++|+++++|++||.|+|+++.+
T Consensus 4 ~~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~-~~-~G~~~~~~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~ 81 (445)
T 3l1l_A 4 DADAHKVGLIPVTLMVSGAIMGSGVFLLPANL-AS-TGGIAIYGWLVTIIGALGLSMVYAKMSFLDPSPGGSYAYARRCF 81 (445)
T ss_dssp ---CCCBCHHHHHHHHHHHHCSSHHHHHHHHH-HH-HCTHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTTHHHHHHHHS
T ss_pred CCCCCcccHHHHHHHHHHhHHhhhHHhhHHHH-HH-hhhHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCchhhHHhHc
Confidence 45689999999999999999999999998874 44 78888999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcceeccccccccCcchhHHHHHHHHHHHHHhccchhHHH
Q 007943 147 GDFVAYIAAGNILFEYVVSGASVARSWTSYFATLCNHDPGSFRIHVSSVAEDYSHLDPIAVIVSFFVCVGACLSMKGSSR 226 (584)
Q Consensus 147 g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 226 (584)
||.+|+..||.+++++....+.++..++++++..++.....+ ...+++++++++.+.+|++|+|..++
T Consensus 82 G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~in~~g~~~~~~ 149 (445)
T 3l1l_A 82 GPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDPW------------VLTITCVVVLWIFVLLNIVGPKMITR 149 (445)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGGSHH------------HHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccccccH------------HHHHHHHHHHHHHHHHHHhchHHHHH
Confidence 999999999999999999999999999888876654211111 12367788888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccccCCCC-CCCCCc---hhHHHHHHHHHHHhhchhhhhhhhcccccCCCCCchhHHH
Q 007943 227 FNSVATIVHIVILIFILITGLTQANTANYA-IFAPNG---VRGILKASAVLFFAYVGFDGVATLGEEVKNPGRDIPIGLI 302 (584)
Q Consensus 227 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~g---~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~r~~p~ai~ 302 (584)
++.+++.++++.++++++.++.+.+++++. ++.+.+ +.+++.++...+|+|.|+|.+++++||+|||+|++||++.
T Consensus 150 ~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r~ip~a~~ 229 (445)
T 3l1l_A 150 VQAVATVLALIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATI 229 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSTTCCCCCCCCC-----------HHHHHHHHHHTTTTTTHHHHGGGGBSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhChhhcccccCccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccccccHHHH
Confidence 999999999999988888877766655542 344433 5678889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCC-CCChHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCC
Q 007943 303 GSMVITITVYCVLSATLCLMQPYSQID-VDAPFTLAFQAVGMNWAKYIVALGALKGMTTVLLANVIGQARYFTHIGRTHM 381 (584)
Q Consensus 303 ~~~~~~~i~y~l~~~~~~~~~~~~~~~-~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~ardg~ 381 (584)
.+..+++++|++..++.....|.+++. .++|+.++++..++++...++.+..+++.+++.++.+++.+|++++|||||.
T Consensus 230 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~dg~ 309 (445)
T 3l1l_A 230 GGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGL 309 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHHCTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999999888888774 4679999999888889999999999999999999999999999999999999
Q ss_pred CchhhhcccCccccchHHHHHHHHHHHHHHHh-------hcHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCccch
Q 007943 382 APPFLAAINGKTGTPVNATVVMSLANSVVAFF-------TSLDVLANLLSISTLFIFSLVALALLVRRYYVAGETSECDQ 454 (584)
Q Consensus 382 lP~~~~~~~~~~~~P~~ai~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~~~~~~ 454 (584)
+|++|+|+| |+++|+++++++.+++.++.+. ..++.+.++.+.+.++.|.+.+++++++|+|+| ++
T Consensus 310 lP~~~~~~~-~~~~P~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~r~~~~-~~----- 382 (445)
T 3l1l_A 310 FPPIFARVN-KAGTPVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHF-GK----- 382 (445)
T ss_dssp SCGGGGCCC-TTCCCHHHHHHHHHHHHHHHHSTTSHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHSSSS-GG-----
T ss_pred CcHHHHhcC-CCCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc-cc-----
Confidence 999999999 6799999999999988766654 357899999999999999999999999887743 10
Q ss_pred hHHHHHHHHHHHHHhHhhhhccccCCCcchhhHHHHHHHHHHHHHhhhhhccCCCCccccccccHHHHHHHHHHHHHHhc
Q 007943 455 KKLIVFLALIISSSIASSAYWATSDNGWIGYIVTVPVWFLATMGLQLTVKEARKPKMWGVPLLPWLPSACIAVNVFVMGS 534 (584)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 534 (584)
|.|..|+++.++.+.+++++..
T Consensus 383 ----------------------------------------------------------r~~~~~~~~~~~~~~~~~~~~~ 404 (445)
T 3l1l_A 383 ----------------------------------------------------------ARPAYLAVTTIAFLYCIWAVVG 404 (445)
T ss_dssp ----------------------------------------------------------GCTTTHHHHHHHHHHHHHHHHH
T ss_pred ----------------------------------------------------------ccchhHHHHHHHHHHHHHHHHH
Confidence 2245677888888888888888
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHhhhcccch
Q 007943 535 VDGQSFVRFMIWTFLLLVYYLFVALHASYDA 565 (584)
Q Consensus 535 ~~~~~~~~~~~~~~i~~~~y~~~~~~~~~~~ 565 (584)
.++.......+++++|+.+|+.++||++++.
T Consensus 405 ~~~~~~~~~~~~~~~g~~~y~~~~~~~~~~~ 435 (445)
T 3l1l_A 405 SGAKEVMWSFVTLMVITAMYALNYNRLHKNP 435 (445)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHSTTCCCS
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhhhcccCc
Confidence 8888888888899999999987766655443
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=100.00 E-value=4e-50 Score=425.55 Aligned_cols=364 Identities=22% Similarity=0.384 Sum_probs=327.2
Q ss_pred cccccCHHHHHHHHHHHhhhhhhHHccHHhHhhccCchHHHHHHHHHHHHHHHHHHHHhhhhccccCCchhhhHHHHhch
Q 007943 69 MKKNLNWWDLIWFGIGAVMGAGIFVLTGEAARNFAGPAVIISYLISGISALLSVLCYTEFSVELPVAGGSFAYLRVELGD 148 (584)
Q Consensus 69 l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ii~~l~~~~~~~~~~el~~~~P~~Gg~y~~~~~~~g~ 148 (584)
.||+++.++.++++++.++|+|++..++..... +||..+++|+++++++++.+++++|+++++|++||.|+|+++.+||
T Consensus 4 ~~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~~~-~G~~~~~~~li~~~~~~~~~~~~~el~~~~P~~Gg~y~~~~~~~G~ 82 (444)
T 3gia_A 4 KNKKLSLWEAVSMAVGVMIGASIFSIFGVGAKI-AGRNLPETFILSGIYALLVAYSYTKLGAKIVSNAGPIAFIHKAIGD 82 (444)
T ss_dssp CCCCBCHHHHHHHHHHHHHHHHTTTSHHHHHHH-HGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCTTTHHHHHHHHHCS
T ss_pred cCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHhHHHHhCc
Confidence 578999999999999999999999999988876 8999999999999999999999999999999999999999999998
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcceeccccccccCcchhHHHHHHHHHHHHHhccchhHHHH
Q 007943 149 F-VAYIAAGNILFEYVVSGASVARSWTSYFATLCNHDPGSFRIHVSSVAEDYSHLDPIAVIVSFFVCVGACLSMKGSSRF 227 (584)
Q Consensus 149 ~-~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 227 (584)
. .+...+|.+|++|....+.++..++++++..++...+.+. ...++++++++.+.+|++|+|..+++
T Consensus 83 ~~~~g~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~in~~g~~~~~~~ 150 (444)
T 3gia_A 83 NIITGALSILLWMSYVISIALFAKGFAGYFLPLINAPINTFN------------IAITEIGIVAFFTALNFFGSKAVGRA 150 (444)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHH------------HHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHH------------HHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 6 3555689999999999999999999999988765332211 23677888889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccCCCCC-CCCCchhHHHHHHHHHHHhhchhhhhhhhcccccCCCCCchhHHHHHHH
Q 007943 228 NSVATIVHIVILIFILITGLTQANTANYAI-FAPNGVRGILKASAVLFFAYVGFDGVATLGEEVKNPGRDIPIGLIGSMV 306 (584)
Q Consensus 228 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~r~~p~ai~~~~~ 306 (584)
+.++..++++.++++++.++...+++++.+ +.++++.+++.+....+|+|.|+|.+++++||+|||+|++||++..+..
T Consensus 151 ~~~~~~~~i~~~~~~ii~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P~r~ip~ai~~~~~ 230 (444)
T 3gia_A 151 EFFIVLVKLLILGLFIFAGLITIHPSYVIPDLAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPRAIFISIL 230 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCGGGTSCCCSHHHHHHHHHHHHHGGGGGTHHHHHHTTGGGBSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcChhhcCCCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHccCcccchhHHHHHHHH
Confidence 999999999999988888888777777665 4556777888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCCCC--CCChHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCch
Q 007943 307 ITITVYCVLSATLCLMQPYSQID--VDAPFTLAFQAVGMNWAKYIVALGALKGMTTVLLANVIGQARYFTHIGRTHMAPP 384 (584)
Q Consensus 307 ~~~i~y~l~~~~~~~~~~~~~~~--~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~ardg~lP~ 384 (584)
+++++|++..++.....|.+++. .+.|+.++++...+++...++.+..+++.+++.++.+++.||++++|||||.+|+
T Consensus 231 ~~~~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~ 310 (444)
T 3gia_A 231 IVMFVYVGVAISAIGNLPIDELIKASENALAVAAKPFLGNLGFLLISIGALFSISSAMNATIYGGANVAYSLAKDGELPE 310 (444)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHSSCCS
T ss_pred HHHHHHHHHHHHHHhCCCHHHHhcccchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 99999999999998888887763 3568888888777788888999999999999999999999999999999999999
Q ss_pred hhhcccCccccchHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC
Q 007943 385 FLAAINGKTGTPVNATVVMSLANSVVAFFTSLDVLANLLSISTLFIFSLVALALLVRRYYVAG 447 (584)
Q Consensus 385 ~~~~~~~~~~~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~r~~~~~ 447 (584)
+|+|+| | ++|.++++++.+++.++.+..+++.+.++.+.+.++.|.+.+++.+++|+++|+
T Consensus 311 ~f~~~~-~-~~P~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 371 (444)
T 3gia_A 311 FFERKV-W-FKSTEGLYITSALGVLFALLFNMEGVASITSAVFMVIYLFVILSHYILIDEVGG 371 (444)
T ss_dssp SCCTTS-C-CSCTHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCC
T ss_pred HHhCCC-C-CCCcHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 999998 4 569999999999999888889999999999999999999999999998888653
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=100.00 E-value=1.3e-47 Score=413.58 Aligned_cols=374 Identities=18% Similarity=0.267 Sum_probs=288.3
Q ss_pred cccccccccCHHHHHHHHHHHhhhhhhHHccHHhHhhccCchHHHHHHHHHHHH-HHHHHHHHhhhh--ccccCCchhhh
Q 007943 65 SEHEMKKNLNWWDLIWFGIGAVMGAGIFVLTGEAARNFAGPAVIISYLISGISA-LLSVLCYTEFSV--ELPVAGGSFAY 141 (584)
Q Consensus 65 ~~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ii~~l~~-~~~~~~~~el~~--~~P~~Gg~y~~ 141 (584)
++++++|+++.+++++++++.++|. +..+. ... +|+..++.+++++++. ++.+++++|+++ ++| +||.|+|
T Consensus 5 ~~~~~~r~l~~~~~~~l~~~~~ig~--~~~~~--~~~-~G~~~~~~~~i~~~~~~l~~al~~ael~s~~~~P-~GG~y~~ 78 (511)
T 4djk_A 5 VQTGKAKQLTLLGFFAITASMVMAV--YEYPT--FAT-SGFSLVFFLLLGGILWFIPVGLCAAEMATVDGWE-EGGVFAW 78 (511)
T ss_dssp -------CCCHHHHHHHTGGGGCCG--GGHHH--HHT-TTTHHHHHHHHHHHHTHHHHHHHHHHHHTTSCC----CHHHH
T ss_pred ccCccCccccHHHHHHHHHHHHHhh--chhHH--HHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCC-CCChhhh
Confidence 5667899999999999999999863 33332 233 8888777777777765 569999999999 999 9999999
Q ss_pred HHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcceeccccccccCcchhHHHHHHHHHHHHHhccc
Q 007943 142 LRVELGDFVAYIAAGNILFEYVVSGASVARSWTSYFATLCNHDPGSFRIHVSSVAEDYSHLDPIAVIVSFFVCVGACLSM 221 (584)
Q Consensus 142 ~~~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 221 (584)
+++.+||.+|+.+||.+|++++...++.....+.++...+.. |..+.+.....+++++++++++.+|++|+
T Consensus 79 ~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------p~~~~~~~~~~~~~~~~~~~~~~in~~g~ 149 (511)
T 4djk_A 79 VSNTLGPRWGFAAISFGYLQIAIGFIPMLYFVLGALSYILKW---------PALNEDPITKTIAALIILWALALTQFGGT 149 (511)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTTTTC---------GGGTSCSSHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---------cccccCcHHHHHHHHHHHHHHHHHHHhCh
Confidence 999999999999999999999999999888888888765321 11111111234678888889999999999
Q ss_pred hhHHHHHHHHHHHHHHH-HHHHHHHhhccc---cc----CCCCCCCCCc-hhHHHHHHHHHHHhhchhhhhhhhcccccC
Q 007943 222 KGSSRFNSVATIVHIVI-LIFILITGLTQA---NT----ANYAIFAPNG-VRGILKASAVLFFAYVGFDGVATLGEEVKN 292 (584)
Q Consensus 222 ~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~---~~----~~~~~~~~~g-~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~ 292 (584)
|..++++.+.+.++++. ++++++.++... ++ .+..++.|+. ..+.+.++...+|+|.|+|.+++++||+||
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~a~E~k~ 229 (511)
T 4djk_A 150 KYTARIAKVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDFSKVGTLVVFVAFILSYMGVEASATHVNEMSN 229 (511)
T ss_dssp SSHHHHTHHHHHHTTHHHHHHHHHHHHHHTC------------CCCCCTTSTTTTTTHHHHHHHHTTGGGGTGGGSSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcccccCCCcccchHHHHHHHHHHHHhhHHHHHHHHHhccC
Confidence 99999999988876544 444444444321 11 1222333321 123445567789999999999999999999
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCChHHHH----HHHhC--chHHHHHHHHHHHHHHHHHHHHHH
Q 007943 293 PGRDIPIGLIGSMVITITVYCVLSATLCLMQPYSQIDVDAPFTLA----FQAVG--MNWAKYIVALGALKGMTTVLLANV 366 (584)
Q Consensus 293 p~r~~p~ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~p~~~~----~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~ 366 (584)
|+|++|||++.++.+++++|++..+++....|+++...+++..+. .+..| .++...++.+..+++.+++.++.+
T Consensus 230 P~k~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (511)
T 4djk_A 230 PGRDYPLAMLLLMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFTVLMSHVAPEIEWTVRVISALLLLGVLAEIASWI 309 (511)
T ss_dssp CTTTHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTSCCSSSTHHHHHHHHHSSSCSSCTTHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHeecCHhhccccchHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999888665544333 33455 578888999999999999999999
Q ss_pred hhhHHHHHHHHhcCCCchhhhcccCccccchHHHHHHHHHHHH-HHHhhc--------HHHHHHHHHHHHHHHHHHHHHH
Q 007943 367 IGQARYFTHIGRTHMAPPFLAAINGKTGTPVNATVVMSLANSV-VAFFTS--------LDVLANLLSISTLFIFSLVALA 437 (584)
Q Consensus 367 ~~~sR~l~~~ardg~lP~~~~~~~~~~~~P~~ai~~~~~~~~~-~~~~~~--------~~~l~~~~~~~~~~~~~~~~~~ 437 (584)
++.||++++|||||.+|++|+|+| |+++|+++++++.++..+ +..+++ ++.+.++.+.+.++.|++.+++
T Consensus 310 ~~~sR~l~a~ardg~lP~~~~~~~-~~~~P~~ai~~~~~~~~l~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~y~~~~~~ 388 (511)
T 4djk_A 310 VGPSRGMYVTAQKNLLPAAFAKMN-KNGVPVTLVISQLVITSIALIILTNTGGGNNMSFLIALALTVVIYLCAYFMLFIG 388 (511)
T ss_dssp THHHHHTCHHHHGGGCSSSCCCCC-SSSCCCHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCcccHHHHhcC-CCCCcHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999 579999999998554333 333333 7899999999999999999999
Q ss_pred HHhhhhhcCCCCCccch
Q 007943 438 LLVRRYYVAGETSECDQ 454 (584)
Q Consensus 438 ~i~~r~~~~~~~~~~~~ 454 (584)
++++|+|+++.+|++|.
T Consensus 389 ~~~~r~~~~~~~~~~~~ 405 (511)
T 4djk_A 389 YIVLVLKHPDLKRTFNI 405 (511)
T ss_dssp HHHHHHHCCSCCCSCCC
T ss_pred HHHHHHhCCCCCCCeec
Confidence 99999988877776663
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=99.30 E-value=3.9e-09 Score=111.88 Aligned_cols=284 Identities=12% Similarity=0.026 Sum_probs=163.5
Q ss_pred cccccCHHHHHHHHHHHhhhhhhHHccHHhHhhccCch-HHHHHHHHHHHHHHHHHHHHhhhhccccCCchhhhHHHHhc
Q 007943 69 MKKNLNWWDLIWFGIGAVMGAGIFVLTGEAARNFAGPA-VIISYLISGISALLSVLCYTEFSVELPVAGGSFAYLRVELG 147 (584)
Q Consensus 69 l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ii~~l~~~~~~~~~~el~~~~P~~Gg~y~~~~~~~g 147 (584)
-+|+.++++.+.+=++..+..+.+..-+... ..-+.. ++++.+++.++........+..+.+.-.+ .....+..||
T Consensus 23 ~~R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~-~GLs~~~a~lai~lG~li~~~~~~l~~~~G~~~Gl~--~~v~~R~~FG 99 (501)
T 2jln_A 23 AERSVGPFSLAAIWFAMAIQVAIFIAAGQMT-SSFQVWQVIVAIAAGCTIAVILLFFTQSAAIRWGIN--FTVAARMPFG 99 (501)
T ss_dssp GGCCBCHHHHHHHHHHHHCSTHHHHHHHHHT-TTSCHHHHHHHHHHHHHHHHHHHHHHTHHHHHHCCC--HHHHTTTTSC
T ss_pred hhCCCCHHHHHHHHHHHHHHHHHHHHHHHHh-cCcCHHHHHHHHHHHHHHHHHHHHHHhHHHhhcCCC--hhhhhHhhcc
Confidence 3577899999998888887766554333332 111222 56666666666555555555665554322 5567888999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----cCCCCCcceeccccccccCcchhHHHHHHHHHHHHHhccchh
Q 007943 148 DFVAYIAAGNILFEYVVSGASVARSWTSYFATLC----NHDPGSFRIHVSSVAEDYSHLDPIAVIVSFFVCVGACLSMKG 223 (584)
Q Consensus 148 ~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 223 (584)
+..+.+......+..+...+......++.++..+ +... ..+..+++.++...+...|.|.
T Consensus 100 ~~Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~~g~~~----------------~~v~~~i~~~l~~~~~~~G~~~ 163 (501)
T 2jln_A 100 IRGSLIPITLKALLSLFWFGFQTWLGALALDEITRLLTGFTN----------------LPLWIVIFGAIQVVTTFYGITF 163 (501)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC----------------HHHHHHHHHHHHHHHHTTHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch----------------HHHHHHHHHHHHHHHHHhCHHH
Confidence 9999988888888888888887777777776654 2211 1133444555667777899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccc--CCCCCCCC-CchhHHHHHHHHH-HHhhchhhhhhhhcccccCCCCC---
Q 007943 224 SSRFNSVATIVHIVILIFILITGLTQANT--ANYAIFAP-NGVRGILKASAVL-FFAYVGFDGVATLGEEVKNPGRD--- 296 (584)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~-~g~~~~~~~~~~~-~~~~~G~e~~~~~a~E~k~p~r~--- 296 (584)
..+++.+...+.++.++.+.+..+...+. ++.....+ ....+++.++..+ .+...+.-..+.++.+.|+++..
T Consensus 164 i~~~~~~~~p~~~i~~i~~~~~~l~~~g~~~~~~~~~~~~~~~~~f~~ai~~~~~~~~~~~~~~~DysRy~~~~~~~~~~ 243 (501)
T 2jln_A 164 IRWMNVFASPVLLAMGVYMVYLMLDGADVSLGEVMSMGGENPGMPFSTAIMIFVGGWIAVVVSIHDIVKECKVDPNASRE 243 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTTCCCSSCCSCHHHHHHHHHTTTHHHHTTTHHHHTTBCCCTTCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhccCCccchHHHHHHHHHHHHHHHHHHhccCcccccCCCCcccccc
Confidence 99999999888877776666655544332 11111111 1122344444332 22234445567788888886541
Q ss_pred --------chhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHhCchHH-HHHHH-HHHHHHHHHHHHH-H
Q 007943 297 --------IPIGLIGSMVITITVYCVLSATLCLMQPYSQIDVDAPFTLAFQAVGMNWA-KYIVA-LGALKGMTTVLLA-N 365 (584)
Q Consensus 297 --------~p~ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~-~~~~~-~~~~~~~~~~~~~-~ 365 (584)
.-.+...+..+...+..+........ ....+|...+.+...++.. ..+.. +..+++.+++... .
T Consensus 244 ~~~~~~~~~~~g~~lG~~i~~~~~~~lG~~~~~~-----~~~~dp~~~l~~~l~~~~~~~~~~~~~~~~la~i~tn~~~n 318 (501)
T 2jln_A 244 GQTKADARYATAQWLGMVPASIIFGFIGAASMVL-----VGEWNPVIAITEVVGGVSIPMAILFQVFVLLATWSTNPAAN 318 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HSCSCHHHHHHHHHTCCCHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred chhhccchHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccccCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhh
Confidence 22222223332222222222221111 1234566555543433333 55556 6677777766663 6
Q ss_pred HhhhHHHHHHH
Q 007943 366 VIGQARYFTHI 376 (584)
Q Consensus 366 ~~~~sR~l~~~ 376 (584)
.++.+--+.++
T Consensus 319 ~ys~~~~l~~~ 329 (501)
T 2jln_A 319 LLSPAYTLCST 329 (501)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 77777666665
No 5
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=98.83 E-value=2.7e-05 Score=84.21 Aligned_cols=283 Identities=13% Similarity=0.103 Sum_probs=143.7
Q ss_pred ccccCHHHHHHHHHHHhhhhhhHHccHHhHhhccCch-HHHHHHHHHHHHHHHHHHHHhhhhccccCCchhhhHHHHhch
Q 007943 70 KKNLNWWDLIWFGIGAVMGAGIFVLTGEAARNFAGPA-VIISYLISGISALLSVLCYTEFSVELPVAGGSFAYLRVELGD 148 (584)
Q Consensus 70 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ii~~l~~~~~~~~~~el~~~~P~~Gg~y~~~~~~~g~ 148 (584)
.|+++++...+-.++..+++..+......... .|.. ..+.|. +.+.....+..+...-.+. +.-..++|.++.||+
T Consensus 48 GR~l~~~~~~~Sl~at~~sa~t~lG~~g~~y~-~G~~~~~~~~~-~~~~~~~~~~~~~p~~~r~-~~~T~~e~l~~Rfg~ 124 (593)
T 2xq2_A 48 GKSLPWWAVGASLIAANISAEQFIGMSGSGYS-IGLAIASYEWM-SAITLIIVGKYFLPIFIEK-GIYTIPEFVEKRFNK 124 (593)
T ss_dssp ---CCHHHHHHHHHGGGSSHHHHHHHHHHHHH-TCGGGGHHHHH-HHHHHHHHHHTHHHHHHHT-TCCSHHHHHHHHTCH
T ss_pred CCCCCHHHHHHHHHHHHhcHHHHhhHhHHHHH-cCHHHHHHHHH-HHHHHHHHHHHHHHHHHhC-CCCCcHHHHHHHccC
Confidence 47888887666555666665544443333333 4543 333222 2222223333333333333 345699999999999
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHccCCCCCcceeccccccccCcchhHHHHHHHHHHHHHhccchhHHHH
Q 007943 149 FVAYIAAGNILFEYV-VSGASVARSWTSYFATLCNHDPGSFRIHVSSVAEDYSHLDPIAVIVSFFVCVGACLSMKGSSRF 227 (584)
Q Consensus 149 ~~g~~~g~~~~l~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 227 (584)
....+......+.+. ...+......+..++..++.+. ...+.+..++.......-|.|...+.
T Consensus 125 ~~~~~~ai~~l~~~~~~~~~~~l~~~~~~l~~~~Gi~~----------------~~~i~i~~~i~~~Yt~~GGl~av~~T 188 (593)
T 2xq2_A 125 KLKTILAVFWISLYIFVNLTSVLYLGGLALETILGIPL----------------MYSILGLALFALVYSIYGGLSAVVWT 188 (593)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCCCH----------------HHHHHHHHHHHHHHHHTTC---CCHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccH----------------HHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 888777766554443 3455566666777777765321 00122222333444555788887777
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccc----------------cCCCCCCCCCc--------hhHHHH-HHHHHHHhhchhh-
Q 007943 228 NSVATIVHIVILIFILITGLTQAN----------------TANYAIFAPNG--------VRGILK-ASAVLFFAYVGFD- 281 (584)
Q Consensus 228 ~~~~~~~~~~~~~~~~i~~~~~~~----------------~~~~~~~~~~g--------~~~~~~-~~~~~~~~~~G~e- 281 (584)
..+-.+++++..+++.+..+...+ ++.++.+.+.+ +...+. +.......+.|.+
T Consensus 189 D~iQ~iiml~~~l~v~~~~l~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~q 268 (593)
T 2xq2_A 189 DVIQVFFLVLGGFMTTYMAVSFIGGTDGWFAGVSKMVDAAPGHFEMILDQSNPQYMNLPGIAVLIGGLWVANLYYWGFNQ 268 (593)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHCGGGSCSSCCSSSGGGGTSCTTHHHHSTHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHhhChhhcccccCCCCcccccchHHHHHHHHHHHHHHHhhcCCh
Confidence 776666666655444433322110 12121111111 111111 1112223344443
Q ss_pred hhhhhcccccCCCCCchhHHHHHHHHHHHHHHHHH---HHHHhc-cC--------------CCCC-CCCChHHHHHHHhC
Q 007943 282 GVATLGEEVKNPGRDIPIGLIGSMVITITVYCVLS---ATLCLM-QP--------------YSQI-DVDAPFTLAFQAVG 342 (584)
Q Consensus 282 ~~~~~a~E~k~p~r~~p~ai~~~~~~~~i~y~l~~---~~~~~~-~~--------------~~~~-~~~~p~~~~~~~~g 342 (584)
...+-.=+.||+ |+..|+.+.+.....++.++.. +..... .+ ..+. ++|..+.... ...
T Consensus 269 ~~~qR~laaks~-k~ar~~~~~~~~~~~~~~~~~~~~Gl~a~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~p~l~-~~l 346 (593)
T 2xq2_A 269 YIIQRTLAAKSV-SEAQKGIVFAAFLALIVPFLVVLPGIAAYVITSDPQLMASLGDIAATNLPSAANADKAYPWLT-QFL 346 (593)
T ss_dssp SHHHHHHTTSCH-HHHHHHHHHHHHHTTTHHHHHTHHHHHHHHHHTCHHHHHHHC-----CCCCSTBGGGHHHHHH-HTS
T ss_pred HHHHHhheeCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccCCCCCChhhHHHHHH-HHc
Confidence 344455577886 6778888877665444333211 111111 00 1122 3355566666 666
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 007943 343 MNWAKYIVALGALKGMTTVLLANVIGQARYF 373 (584)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l 373 (584)
++++..++.++.+.+.+++..+.+.+.|-.+
T Consensus 347 p~~l~gl~~a~llaA~mST~~s~l~a~st~~ 377 (593)
T 2xq2_A 347 PVGVKGVVFAALAAAIVSSLASMLNSTATIF 377 (593)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888888888888888877777654
No 6
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=98.71 E-value=9.3e-05 Score=78.85 Aligned_cols=288 Identities=14% Similarity=0.117 Sum_probs=143.1
Q ss_pred ccccCHHHHHHHHHHHhhhhhhHHccHHhHhhccCch-HHHHHHHHHHHHHHHHHHHHhhhhccccCCchhhhHHHHhch
Q 007943 70 KKNLNWWDLIWFGIGAVMGAGIFVLTGEAARNFAGPA-VIISYLISGISALLSVLCYTEFSVELPVAGGSFAYLRVELGD 148 (584)
Q Consensus 70 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ii~~l~~~~~~~~~~el~~~~P~~Gg~y~~~~~~~g~ 148 (584)
.|++++|...+-..++.+++..+......... .|.. ..+.|. +++.....+..+...-.+. +.-..++|.++.||+
T Consensus 19 GR~l~~~~~~~s~~at~~Sa~~~lG~~g~~y~-~G~~~~~~~~~-~~~~~~i~~~~~~p~~~~~-~~~T~~e~l~~Rfg~ 95 (530)
T 3dh4_A 19 GKSLPWWAVGASLIAANISAEQFIGMSGSGYS-IGLAIASYEWM-SAITLIIVGKYFLPIFIEK-GIYTIPEFVEKRFNK 95 (530)
T ss_dssp CSCCCHHHHHHHHHHHHCSHHHHTHHHHHHHH-TCGGGHHHHHH-HHHHHHHHHHHTHHHHHHT-TCCSHHHHHHHHTCH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHH-HHHHHHHHHHHHHHHHHHc-CCccHHHHHHHHcCc
Confidence 48899999888888877766555544433333 4544 323232 2222223333333333332 345799999999999
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHccCCCCCcceeccccccccCcchhHHHHHHHHHHHHHhccchhHHHH
Q 007943 149 FVAYIAAGNILFEYV-VSGASVARSWTSYFATLCNHDPGSFRIHVSSVAEDYSHLDPIAVIVSFFVCVGACLSMKGSSRF 227 (584)
Q Consensus 149 ~~g~~~g~~~~l~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 227 (584)
....+.+....+.+. ...++.....+..++..++.+. ...+.+..++.......-|.|...+.
T Consensus 96 ~~~~~~a~~~l~~~~~~~~~~~l~~~~~~~~~~~Gi~~----------------~~~i~i~~~i~~~Yt~~GGl~aV~~T 159 (530)
T 3dh4_A 96 KLKTILAVFWISLYIFVNLTSVLYLGGLALETILGIPL----------------MYSILGLALFALVYSIYGGLSAVVWT 159 (530)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCH----------------HHHHHHHHHHHHHTTC------CCSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH----------------HHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 888777766555443 3445555566667777765321 00111122222233334578877777
Q ss_pred HHHHHHHHHHHHHHHHHHhhccc----------------ccCCCCCC----CC-----CchhHHHHHHHHHHHhhchhhh
Q 007943 228 NSVATIVHIVILIFILITGLTQA----------------NTANYAIF----AP-----NGVRGILKASAVLFFAYVGFDG 282 (584)
Q Consensus 228 ~~~~~~~~~~~~~~~~i~~~~~~----------------~~~~~~~~----~~-----~g~~~~~~~~~~~~~~~~G~e~ 282 (584)
..+-.++.++..+++.+..+... +++.+..+ .+ .++...+.+.......|.|.+-
T Consensus 160 D~iQ~~im~~g~~~v~~~~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~g~~q 239 (530)
T 3dh4_A 160 DVIQVFFLVLGGFMTTYMAVSFIGGTDGWFAGVSKMVDAAPGHFEMILDQSNPQYMNLPGIAVLIGGLWVANLYYWGFNQ 239 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHCGGGGCSSCCSSSSGGGGSCTTHHHHSTHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCchhcccccCCCCccccccchHHHHHHHHHHHHHHHHcCCH
Confidence 76666666655444433332210 11111111 11 1121111111112233444422
Q ss_pred -hhhhcccccCCCCCchhHHHHHHHHHHHHHHH---HHHHHHhccC----------------CCCCCCCChHHHHHHHhC
Q 007943 283 -VATLGEEVKNPGRDIPIGLIGSMVITITVYCV---LSATLCLMQP----------------YSQIDVDAPFTLAFQAVG 342 (584)
Q Consensus 283 -~~~~a~E~k~p~r~~p~ai~~~~~~~~i~y~l---~~~~~~~~~~----------------~~~~~~~~p~~~~~~~~g 342 (584)
..+-.=..||+ |+..|+.+.+......+.++ ..++.....+ ++..++|..+....+ ..
T Consensus 240 ~i~qR~laaks~-k~ar~~~~~~~~~~~~~~~~~~~~Gl~a~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~l~~-~l 317 (530)
T 3dh4_A 240 YIIQRTLAAKSV-SEAQKGIVFAAFLKLIVPFLVVLPGIAAYVITSDPQLMASLGDIAATNLPSAANADKAYPWLTQ-FL 317 (530)
T ss_dssp HHHHHHHSSSCH-HHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHCHHHHHHHCTTCCSCCCCSSSGGGHHHHHHT-TC
T ss_pred HHHHHHHHcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccchhhcccccccCCCCCCcchHHHHHHH-Hc
Confidence 33333345675 56777777776554332211 1111111110 122234566666665 66
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCC
Q 007943 343 MNWAKYIVALGALKGMTTVLLANVIGQARYFTHIGRTHM 381 (584)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~ardg~ 381 (584)
++++.-++....+.+.+++..+.+.+.|-.+ .+|=.
T Consensus 318 p~~l~Gl~~a~llAA~mST~ss~l~s~st~~---~~Diy 353 (530)
T 3dh4_A 318 PVGVKGVVFAALAAAIVSSLASMLNSTATIF---TMDIY 353 (530)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHTC
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhHHHH---HhHHH
Confidence 6777777777888888888888887777664 45643
No 7
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=98.14 E-value=0.0015 Score=68.40 Aligned_cols=240 Identities=15% Similarity=0.172 Sum_probs=122.4
Q ss_pred CHHHHHHHHHHHhhhhhhHHccHHhHhhccCchHHHHHHHHHHH----HHHHHHHHHhhhhccccCCchhhhHHHH---h
Q 007943 74 NWWDLIWFGIGAVMGAGIFVLTGEAARNFAGPAVIISYLISGIS----ALLSVLCYTEFSVELPVAGGSFAYLRVE---L 146 (584)
Q Consensus 74 ~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ii~~l~----~~~~~~~~~el~~~~P~~Gg~y~~~~~~---~ 146 (584)
+..+-+.-++|..+|.|-....+....+.||..-++-+++..++ .+..=+++++++++..+.|..-.|-+-. .
T Consensus 10 sr~~FiLa~~G~AVGLGNiWRFPyl~~~nGGgAFlipYli~l~~~GiPll~~E~alGq~~~~~~r~~~i~a~~~l~~~~~ 89 (519)
T 2a65_A 10 TRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLLWRNRF 89 (519)
T ss_dssp CHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTTCCSHHHHHHHHSCSHH
T ss_pred cHHHHHHHHHHHHhcccHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHhcccchhccCCCHHHHHHHhcCCcC
Confidence 34555666778889999887888777776776544444443333 3334444455444344555454443211 1
Q ss_pred chHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHcc--CCCCC--cc------eeccc---cc---c---cc-Ccch
Q 007943 147 GDFVAYI---AAGNILFEYVVSGASVARSWTSYFATLCN--HDPGS--FR------IHVSS---VA---E---DY-SHLD 203 (584)
Q Consensus 147 g~~~g~~---~g~~~~l~~~~~~a~~~~~~~~~~~~~~~--~~~~~--~~------~~~~~---~~---~---~~-~~~~ 203 (584)
.+..|+. .+......|....+-....+...+...++ ...++ -. ..+.+ .+ + +. ....
T Consensus 90 ~~giG~~~v~~~~~i~~yY~vi~gW~l~Y~~~s~~~~lp~~w~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~g~~~~~~~ 169 (519)
T 2a65_A 90 AKILGVFGLWIPLVVAIYYVYIESWTLGFAIKFLVGLVPEPPPNATDPDSILRPFKEFLYSYIGVPKGDEPILKPSLFAY 169 (519)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCC--CCHHHHHHHHHHHHHHHHTCCSSSSCBCCCCHHHH
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCcccccCcHHHHHHHHHCCCCCcccccCccHHHH
Confidence 1222322 22223333333322222222222222111 00000 00 00000 00 0 00 1112
Q ss_pred hHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHHHHHHhhccccc-----CC----CCC-CCCC-chhHHHHHHH
Q 007943 204 PIAVIVSFFVCVGACLSM-KGSSRFNSVATIVHIVILIFILITGLTQANT-----AN----YAI-FAPN-GVRGILKASA 271 (584)
Q Consensus 204 ~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~----~~~-~~~~-g~~~~~~~~~ 271 (584)
+..+++.++...+..+|+ |-..|...++...-.+.++++.+-++...++ +. +.| +..- ....+..+..
T Consensus 170 ~~~~~~w~i~~~ii~~Gv~kgiek~~~~~mp~l~vlliiL~ir~ltLpGp~~~A~~Gl~~~~~Pd~s~L~~~~vw~~A~g 249 (519)
T 2a65_A 170 IVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGTAADGLNFLWTPDFEKLKDPGVWIAAVG 249 (519)
T ss_dssp HHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHHHHHHHHHHTTCEETTEEHHHHHHHHHSCCTTSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCHHHhCCHHHHHHHHH
Confidence 233444555566667899 6689999988877777666666555443221 00 111 1111 1345677888
Q ss_pred HHHHhhc-hhhhhhhhcccccCCCCCchhHHHHHHHHHHHHHHH
Q 007943 272 VLFFAYV-GFDGVATLGEEVKNPGRDIPIGLIGSMVITITVYCV 314 (584)
Q Consensus 272 ~~~~~~~-G~e~~~~~a~E~k~p~r~~p~ai~~~~~~~~i~y~l 314 (584)
.++|+++ |+.....++.-.|+ +.|++|............-++
T Consensus 250 Q~FFSLslG~G~~ity~SY~~~-~~n~~~~a~~v~~~n~~~sll 292 (519)
T 2a65_A 250 QIFFTLSLGFGAIITYASYVRK-DQDIVLSGLTAATLNEKAEVI 292 (519)
T ss_dssp HHHHHHTTTSSHHHHHHTTSCT-TSCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhHHHHhHHhhhhcccCC-CcChHhhHHHHHHHHHHHHHH
Confidence 8999987 88888888888776 678888777766665555443
No 8
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=96.14 E-value=1.2 Score=46.33 Aligned_cols=24 Identities=21% Similarity=0.202 Sum_probs=20.6
Q ss_pred cccccCHHHHHHHHHHHhhhhhhH
Q 007943 69 MKKNLNWWDLIWFGIGAVMGAGIF 92 (584)
Q Consensus 69 l~r~l~~~~~~~~~~~~~ig~gi~ 92 (584)
-|.+++.++-++|.++.-+|.|+.
T Consensus 92 ~kPefS~~sW~aMlF~AGmGiGl~ 115 (539)
T 4ain_A 92 EAPEFRTVSWISMMFAAGMGIGLM 115 (539)
T ss_dssp CCCSSCHHHHHHHHHTTSCCTHHH
T ss_pred CCCCCcchHHHHHHHHHhhcchhe
Confidence 367899999999999999888865
No 9
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A*
Probab=95.76 E-value=2.2 Score=44.07 Aligned_cols=25 Identities=12% Similarity=0.179 Sum_probs=20.7
Q ss_pred cccccCHHHHHHHHHHHhhhhhhHH
Q 007943 69 MKKNLNWWDLIWFGIGAVMGAGIFV 93 (584)
Q Consensus 69 l~r~l~~~~~~~~~~~~~ig~gi~~ 93 (584)
-|.+++.++-+++.++.-+|.|+..
T Consensus 87 ~kPefs~~sW~aMlF~aGmGiGl~f 111 (509)
T 2wsw_A 87 EKPEFSTASWIFMMFASCTSAAVLF 111 (509)
T ss_dssp SCCSSCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCCccchHHHHHHHHhhhhHHhh
Confidence 4567999999999999998888554
No 10
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=78.15 E-value=24 Score=36.43 Aligned_cols=63 Identities=10% Similarity=0.099 Sum_probs=37.9
Q ss_pred HHhhhhhccCCCCccccccccH----HHHHHHHHHHHHHhc-------------CChhhHHHHHHHHHHHHHHHHHHhhh
Q 007943 498 GLQLTVKEARKPKMWGVPLLPW----LPSACIAVNVFVMGS-------------VDGQSFVRFMIWTFLLLVYYLFVALH 560 (584)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~p~----~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~i~~~~y~~~~~~ 560 (584)
.+.+++++++.+++||.|..|+ ++.++++.+++.+.. ++| .....+++++++.++|+.|+++
T Consensus 389 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~ 467 (511)
T 4djk_A 389 YIVLVLKHPDLKRTFNIPGGKGVKLVVAIVGLLTSIMAFIVSFLPPDNIQGDSTDMY-VELLVVSFLVVLALPFILYAVH 467 (511)
T ss_dssp HHHHHHHCCSCCCSCCCSSTTHHHHHHHHHHHHHHHHHHHHTTCCCSCSTTCCCCCH-HHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHhCCCCCCCeecCCCchHHHHHHHHHHHHHHHHHHeeeeCCccccCCchHHH-HHHHHHHHHHHHHHHHHHHHHh
Confidence 3445556667788999996554 445556666555543 245 3445566666677777676544
Q ss_pred c
Q 007943 561 A 561 (584)
Q Consensus 561 ~ 561 (584)
+
T Consensus 468 ~ 468 (511)
T 4djk_A 468 D 468 (511)
T ss_dssp -
T ss_pred h
Confidence 3
No 11
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=34.53 E-value=36 Score=22.01 Aligned_cols=16 Identities=13% Similarity=0.222 Sum_probs=8.1
Q ss_pred HHHHHHHHHHhhhccc
Q 007943 548 FLLLVYYLFVALHASY 563 (584)
Q Consensus 548 ~i~~~~y~~~~~~~~~ 563 (584)
++.+.+|++++||+.+
T Consensus 25 ii~~~~~~~~RRRr~~ 40 (44)
T 2l2t_A 25 IVGLTFAVYVRRKSIK 40 (44)
T ss_dssp HHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHhhhhhhh
Confidence 4445555555555443
No 12
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=32.37 E-value=40 Score=21.79 Aligned_cols=16 Identities=19% Similarity=0.073 Sum_probs=8.0
Q ss_pred HHHHHHHHHHhhhccc
Q 007943 548 FLLLVYYLFVALHASY 563 (584)
Q Consensus 548 ~i~~~~y~~~~~~~~~ 563 (584)
++.+++|++++||+.+
T Consensus 26 ii~~~~~~~~RRr~~~ 41 (44)
T 2ks1_B 26 VVALGIGLFMRRRHIV 41 (44)
T ss_dssp HHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHhhhhHhh
Confidence 4445555555555443
No 13
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=30.39 E-value=39 Score=25.00 Aligned_cols=16 Identities=13% Similarity=-0.029 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHh
Q 007943 543 FMIWTFLLLVYYLFVA 558 (584)
Q Consensus 543 ~~~~~~i~~~~y~~~~ 558 (584)
+++++++|++..++|+
T Consensus 18 i~gilliGllllliwk 33 (79)
T 2knc_B 18 MGAILLIGLAALLIWK 33 (79)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555665555554
Done!