BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007944
(584 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1R28|A Chain A, Crystal Structure Of The B-Cell Lymphoma 6 (Bcl6) Btb
Domain To 2.2 Angstrom
pdb|1R28|B Chain B, Crystal Structure Of The B-Cell Lymphoma 6 (Bcl6) Btb
Domain To 2.2 Angstrom
pdb|1R29|A Chain A, Crystal Structure Of The B-cell Lymphoma 6 (bcl6) Btb
Domain To 1.3 Angstrom
pdb|1R2B|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Complexed With A
Smrt Co-Repressor Peptide
pdb|1R2B|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Complexed With A
Smrt Co-Repressor Peptide
pdb|3BIM|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|C Chain C, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|D Chain D, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|E Chain E, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|F Chain F, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|G Chain G, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|H Chain H, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3LBZ|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Complexed With
The Molecule Inhibitor 79-6
pdb|3LBZ|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Complexed With
The Molecule Inhibitor 79-6
Length = 127
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 22 SQEIPTDIVVAVGEANFPLHKFMLVAKSNYIRKLIIESKEADLTRINLSNIPGGPEMFEK 81
S++I TD+V+ V F HK +L+A S + + + +L+ INL + PE F
Sbjct: 25 SRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINL-DPEINPEGFNI 83
Query: 82 AAKFCYGVNFEITVHNVAALRCAAEFLQM 110
F Y + N+ A+ A +LQM
Sbjct: 84 LLDFMYTSRLNLREGNIMAVMATAMYLQM 112
>pdb|2Q81|A Chain A, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|B Chain B, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|C Chain C, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|D Chain D, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
Length = 119
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
Query: 28 DIVVAVGEANFPLHKFMLVAKSNYIRKLIIESKEADLTRINLSNIPGGPEMFEKAAKFCY 87
D V +F HK +L A S Y + L ++ K D+ +++SN G ++ E F Y
Sbjct: 29 DCTFVVDGVHFKAHKAVLAACSEYFKMLFVDQK--DVVHLDISNAAGLGQVLE----FMY 82
Query: 88 GVNFEITVHNVAALRCAAEFLQMTD 112
++ NV + A FLQM D
Sbjct: 83 TAKLSLSPENVDDVLAVATFLQMQD 107
>pdb|3M52|A Chain A, Crystal Structure Of The Btb Domain From The Miz-1ZBTB17
Transcription Regulator
pdb|3M52|B Chain B, Crystal Structure Of The Btb Domain From The Miz-1ZBTB17
Transcription Regulator
Length = 117
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
Query: 28 DIVVAVGEANFPLHKFMLVAKSNYIRKLIIESKEADLTRINLSNIPGGPEMFEKAAKFCY 87
D V +F HK +L A S Y + L ++ K D+ +++SN G ++ E F Y
Sbjct: 27 DCTFVVDGVHFKAHKAVLAACSEYFKMLFVDQK--DVVHLDISNAAGLGQVLE----FMY 80
Query: 88 GVNFEITVHNVAALRCAAEFLQMTD 112
++ NV + A FLQM D
Sbjct: 81 TAKLSLSPENVDDVLAVATFLQMQD 105
>pdb|3E4U|A Chain A, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|B Chain B, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|C Chain C, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|D Chain D, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|E Chain E, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|F Chain F, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
Length = 130
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 22 SQEIPTDIVVAVGEANFPLHKFMLVAKSNYIRKLIIESKEADLTRINLSNIPGGPEMFEK 81
S++I TD+V+ V F HK +L+A S + + + +L+ INL + PE F
Sbjct: 28 SRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKCNLSVINL-DPEINPEGFCI 86
Query: 82 AAKFCYGVNFEITVHNVAALRCAAEFLQM 110
F Y + N+ A+ A +LQM
Sbjct: 87 LLDFMYTSRLNLREGNIMAVMATAMYLQM 115
>pdb|3GA1|A Chain A, Crystal Structure Of The Human Nac1 Poz Domain
pdb|3GA1|B Chain B, Crystal Structure Of The Human Nac1 Poz Domain
Length = 129
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 8/92 (8%)
Query: 23 QEIPTDIVVAVGEANFPLHKFMLVAKSNYIRKLIIESKEADLTRINLSNIPGG--PEMFE 80
Q + D+ V V F H+ +L A S+Y R L S+ A + +P P+ F+
Sbjct: 30 QGLYCDVSVVVKGHAFKAHRAVLAASSSYFRDLFNNSRSA------VVELPAAVQPQSFQ 83
Query: 81 KAAKFCYGVNFEITVHNVAALRCAAEFLQMTD 112
+ FCY + V + L A FLQ+ +
Sbjct: 84 QILSFCYTGRLSMNVGDQDLLMYTAGFLQIQE 115
>pdb|2NN2|A Chain A, Crystal Structure Of The Btb Domain From The LrfZBTB7
Transcriptional Regulator
pdb|2NN2|B Chain B, Crystal Structure Of The Btb Domain From The LrfZBTB7
Transcriptional Regulator
Length = 133
Score = 35.0 bits (79), Expect = 0.13, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 36/89 (40%), Gaps = 1/89 (1%)
Query: 22 SQEIPTDIVVAVGEANFPLHKFMLVAKSNYIRKLIIESKEADLTRINLSNIPGGPEMFEK 81
+Q + D+V+ V FP H+ +L A S Y +KL D + + E
Sbjct: 31 TQGLLCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEIDFVSA-EALTA 89
Query: 82 AAKFCYGVNFEITVHNVAALRCAAEFLQM 110
F Y ++ NV + AA L++
Sbjct: 90 LMDFAYTATLTVSTANVGDILSAARLLEI 118
>pdb|2IF5|A Chain A, Structure Of The Poz Domain Of Human Lrf, A Master
Regulator Of Oncogenesis
Length = 120
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 36/89 (40%), Gaps = 1/89 (1%)
Query: 22 SQEIPTDIVVAVGEANFPLHKFMLVAKSNYIRKLIIESKEADLTRINLSNIPGGPEMFEK 81
+Q + D+V+ V FP H+ +L A S Y +KL D + + E
Sbjct: 21 TQGLLCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEIDFVSA-EALTA 79
Query: 82 AAKFCYGVNFEITVHNVAALRCAAEFLQM 110
F Y ++ NV + AA L++
Sbjct: 80 LMDFAYTATLTVSTANVGDILSAARLLEI 108
>pdb|2WZQ|A Chain A, Insertion Mutant E173gp174 Of The Ns3 Protease-Helicase
From Dengue Virus
Length = 619
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 353 DFRESCSCSPAMHRVAKTVGTYLGEIATSGELSISKFNGIANLVPKGSRKVDDDLYRAID 412
DF+ S SP +++ K +G Y + T +S + +VD+D++R
Sbjct: 129 DFKPGTSGSPIINKKGKVIGLYGNGVVTKSGDYVSAITQAERIGEGPDYEVDEDIFRKKR 188
Query: 413 I-YLKAHPNLDEIER 426
+ + HP + +R
Sbjct: 189 LTIMDLHPGAGKTKR 203
>pdb|2VPK|A Chain A, Crystal Structure Of The Btb Domain Of Human Myoneurin
Length = 116
Score = 28.9 bits (63), Expect = 9.3, Method: Composition-based stats.
Identities = 19/85 (22%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 28 DIVVAVGEANFPLHKFMLVAKSNYIRKLIIESKEADLTRINLSNIPGGPEMFEKAAKFCY 87
D + +GE F H+ +L + S Y + + E ++ ++ S + + F+K +F Y
Sbjct: 24 DCTIVIGEFQFKAHRNVLASFSEYFGAIYRSTSENNVF-LDQSQVKA--DGFQKLLEFIY 80
Query: 88 GVNFEITVHNVAALRCAAEFLQMTD 112
+ NV + AA++L++ +
Sbjct: 81 TGTLNLDSWNVKEIHQAADYLKVEE 105
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.132 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,780,307
Number of Sequences: 62578
Number of extensions: 539624
Number of successful extensions: 1371
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1362
Number of HSP's gapped (non-prelim): 14
length of query: 584
length of database: 14,973,337
effective HSP length: 104
effective length of query: 480
effective length of database: 8,465,225
effective search space: 4063308000
effective search space used: 4063308000
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)