Query 007944
Match_columns 584
No_of_seqs 499 out of 1954
Neff 6.1
Searched_HMMs 46136
Date Thu Mar 28 17:25:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007944.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007944hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03000 NPH3: NPH3 family; I 100.0 1.4E-83 3E-88 648.9 22.5 257 181-443 1-258 (258)
2 KOG4441 Proteins containing BT 100.0 2.2E-30 4.8E-35 290.4 21.8 231 17-301 27-260 (571)
3 PHA02713 hypothetical protein; 100.0 6.5E-29 1.4E-33 278.4 20.6 229 15-301 14-248 (557)
4 PHA03098 kelch-like protein; P 99.9 2.4E-26 5.2E-31 255.8 20.9 221 23-302 6-237 (534)
5 PHA02790 Kelch-like protein; P 99.9 5.4E-27 1.2E-31 258.7 13.7 175 20-223 16-195 (480)
6 PF00651 BTB: BTB/POZ domain; 99.7 1.3E-16 2.9E-21 140.2 10.5 102 20-129 4-109 (111)
7 KOG4350 Uncharacterized conser 99.7 7.1E-16 1.5E-20 160.8 15.2 180 13-222 31-219 (620)
8 smart00225 BTB Broad-Complex, 99.6 3.2E-15 6.9E-20 124.2 9.1 88 28-123 1-89 (90)
9 KOG2075 Topoisomerase TOP1-int 99.6 3.9E-14 8.4E-19 151.1 15.8 189 11-223 99-295 (521)
10 KOG4591 Uncharacterized conser 99.4 9.2E-13 2E-17 126.9 10.9 156 18-203 58-221 (280)
11 KOG4682 Uncharacterized conser 99.0 1.3E-09 2.9E-14 114.6 11.2 183 13-221 52-245 (488)
12 KOG0783 Uncharacterized conser 98.9 1.4E-09 3E-14 122.1 6.9 166 26-210 710-885 (1267)
13 KOG0783 Uncharacterized conser 98.4 2.9E-07 6.4E-12 103.9 7.1 66 23-90 555-633 (1267)
14 PF07707 BACK: BTB And C-termi 97.9 6E-06 1.3E-10 71.6 2.8 102 129-281 1-102 (103)
15 smart00875 BACK BTB And C-term 97.7 0.00027 5.8E-09 60.5 9.0 72 130-224 2-73 (101)
16 KOG2838 Uncharacterized conser 97.1 0.0006 1.3E-08 69.5 5.1 99 12-112 116-220 (401)
17 PF02214 BTB_2: BTB/POZ domain 97.1 0.00088 1.9E-08 57.8 5.2 81 29-112 1-88 (94)
18 smart00512 Skp1 Found in Skp1 96.9 0.004 8.6E-08 55.1 8.2 79 29-110 4-104 (104)
19 KOG2716 Polymerase delta-inter 96.9 0.0039 8.4E-08 62.9 9.0 94 29-130 7-104 (230)
20 PF11822 DUF3342: Domain of un 96.8 0.0012 2.6E-08 69.2 4.6 91 29-127 1-100 (317)
21 KOG3473 RNA polymerase II tran 96.2 0.021 4.5E-07 50.0 7.3 78 29-109 19-111 (112)
22 PF03931 Skp1_POZ: Skp1 family 95.8 0.056 1.2E-06 43.4 7.8 56 29-88 3-59 (62)
23 KOG0511 Ankyrin repeat protein 95.6 0.042 9.1E-07 58.7 8.4 74 36-112 301-379 (516)
24 KOG0511 Ankyrin repeat protein 95.0 0.029 6.2E-07 59.9 4.7 122 20-155 141-265 (516)
25 KOG2838 Uncharacterized conser 94.8 0.038 8.2E-07 56.7 4.9 57 37-94 262-329 (401)
26 KOG1724 SCF ubiquitin ligase, 92.4 0.51 1.1E-05 45.5 7.6 75 34-112 13-114 (162)
27 KOG2714 SETA binding protein S 91.4 0.69 1.5E-05 50.5 8.0 82 29-112 13-99 (465)
28 KOG1665 AFH1-interacting prote 89.4 1.1 2.4E-05 45.2 7.0 88 29-125 11-105 (302)
29 KOG1987 Speckle-type POZ prote 86.2 0.34 7.4E-06 50.2 1.4 87 35-129 109-199 (297)
30 COG5201 SKP1 SCF ubiquitin lig 74.5 13 0.00029 34.5 7.2 88 29-126 4-117 (158)
31 KOG2715 Uncharacterized conser 64.6 21 0.00046 34.7 6.6 88 28-123 22-114 (210)
32 PF04508 Pox_A_type_inc: Viral 60.9 7 0.00015 25.6 1.8 17 504-520 2-18 (23)
33 KOG3840 Uncharaterized conserv 59.0 35 0.00076 36.2 7.5 106 21-128 90-205 (438)
34 PF14363 AAA_assoc: Domain ass 52.8 7.4 0.00016 34.1 1.3 42 396-438 30-71 (98)
35 PF01466 Skp1: Skp1 family, di 47.6 23 0.00049 29.7 3.4 30 92-127 10-39 (78)
36 KOG4350 Uncharacterized conser 47.4 10 0.00022 41.6 1.5 112 93-218 145-263 (620)
37 PF07407 Seadorna_VP6: Seadorn 35.7 40 0.00087 36.0 3.7 31 489-519 32-62 (420)
38 COG3510 CmcI Cephalosporin hyd 33.9 23 0.0005 35.4 1.6 36 392-427 182-219 (237)
39 PF10929 DUF2811: Protein of u 30.5 37 0.00081 27.2 1.9 19 405-423 8-26 (57)
40 PF02183 HALZ: Homeobox associ 29.0 73 0.0016 24.2 3.2 23 490-512 20-42 (45)
41 KOG2723 Uncharacterized conser 28.0 1.3E+02 0.0029 30.5 5.9 81 29-112 11-97 (221)
42 PRK14127 cell division protein 27.0 91 0.002 28.2 4.0 32 490-521 38-69 (109)
43 COG4467 Regulator of replicati 26.7 48 0.001 29.9 2.2 29 491-519 31-61 (114)
44 PF01166 TSC22: TSC-22/dip/bun 26.4 53 0.0012 26.4 2.1 27 493-519 11-37 (59)
45 PF06156 DUF972: Protein of un 25.6 88 0.0019 28.1 3.7 28 491-518 31-58 (107)
46 PF05377 FlaC_arch: Flagella a 25.6 1E+02 0.0023 24.5 3.6 26 491-516 16-41 (55)
47 PF13764 E3_UbLigase_R4: E3 ub 25.3 54 0.0012 39.4 2.9 75 314-421 252-335 (802)
48 PHA03098 kelch-like protein; P 24.2 2.6E+02 0.0056 31.4 8.0 30 92-127 104-133 (534)
49 PF09593 Pathogen_betaC1: Beta 23.8 89 0.0019 28.7 3.4 77 34-112 20-97 (117)
50 KOG3713 Voltage-gated K+ chann 23.8 2.9E+02 0.0062 31.3 7.9 83 26-112 30-126 (477)
51 PF10473 CENP-F_leu_zip: Leuci 23.8 96 0.0021 29.3 3.7 31 491-521 75-105 (140)
52 PRK13182 racA polar chromosome 20.2 1.6E+02 0.0035 28.8 4.6 28 492-519 121-148 (175)
No 1
>PF03000 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 protein is a signal transducer of the phototropic response in Arabidopsis thaliana. The RPT2 gene is light inducible; encodes a novel protein with putative phosphorylation sites, a nuclear localization signal, a BTB/POZ domain (IPR000210 from INTERPRO), and a coiled-coil domain. RPT2 belongs to a large gene family that includes the recently isolated NPH3 gene []. The NPH3 protein is a NPH1 photoreceptor-interacting protein that is essential for phototropism. Phototropism of A. thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase []. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay []. Many of the proteins in this group also contain the BTB/POZ domain (IPR000210 from INTERPRO) at the N-terminal.; GO: 0004871 signal transducer activity, 0009416 response to light stimulus
Probab=100.00 E-value=1.4e-83 Score=648.93 Aligned_cols=257 Identities=42% Similarity=0.694 Sum_probs=225.9
Q ss_pred CCCcccccccCCHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCccccchHHHHHHHHHHHH
Q 007944 181 PNWWTEELSIIDIEFFSRIIAAMKKRGAKALTIASALITYTERSLRDLVRDHSAGNGTKSSDAQSTNSQVRYQQRELLES 260 (584)
Q Consensus 181 ~dWW~EDl~~L~~d~~~rvI~a~~~~~~~ee~v~~al~~ya~k~l~~~~r~~~~~~~~~~~~~~~~~~~~~~~~r~lLE~ 260 (584)
.|||+||++.|++++|+|||.+|+.+|++++.|+++|++||++|+|++.++. .+... ..........++|.+||+
T Consensus 1 ~dWW~eDl~~L~id~f~rvi~a~~~~~~~~~~I~~~l~~Ya~k~l~~~~~~~-~~~~~----~~~~~~~~~~~~r~llEt 75 (258)
T PF03000_consen 1 KDWWFEDLSELSIDLFKRVISAMKSKGMKPEVIGEALMHYAKKWLPGLSRSS-SGSSS----SAESSTSSENEQRELLET 75 (258)
T ss_pred CCccHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCccccc-ccccc----cccccchhHHHHHHHHHH
Confidence 4899999999999999999999999999999999999999999999974421 11000 012234567899999999
Q ss_pred HHhhCCCCCCCCCHHHHHHHHHhhhhccCChhhHHHHHHHHHhhhhhccccchhccccCCCCC-ccccHHHHHHHHHHHH
Q 007944 261 IVSLMPSEKAAFPINFLCCLLRSAIFLKASTSCKNELEKRVSAILEHVSVDDLLVLSFTYDGE-RLFDLESVRKIISGFV 339 (584)
Q Consensus 261 Iv~LLP~~k~~vs~~fL~~lLr~a~~l~as~~Cr~~LE~rig~qLd~AtlddLLips~~~~~~-~~ydvd~v~ri~~~Fl 339 (584)
||.|||.+|+++||+|||+|||+|++++++..||.+||+|||.|||||||||||||+ ++.++ |+||||+|+|||++||
T Consensus 76 iV~lLP~e~~svsc~FL~~LLr~A~~l~as~~cr~~Le~rIg~qLd~AtldDLLIP~-~~~~~~t~yDVd~V~riv~~Fl 154 (258)
T PF03000_consen 76 IVSLLPPEKGSVSCSFLFRLLRAAIMLGASSACRNELERRIGSQLDQATLDDLLIPS-SPSGEDTLYDVDLVQRIVEHFL 154 (258)
T ss_pred HHHhCCCCCCcccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhccHHHhcccC-CCCcccchhhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999 44444 9999999999999999
Q ss_pred hccccccccCCCCCccccCCCchhhhHHHhhhhhhhhhhcCCCCCChhHHHHHhhhcCCCCcccchhhHHHHHHHHHhCC
Q 007944 340 EKEKSMAVFSGSGDFRESCSCSPAMHRVAKTVGTYLGEIATSGELSISKFNGIANLVPKGSRKVDDDLYRAIDIYLKAHP 419 (584)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Vakl~D~yLaEiA~D~~L~~~kF~~lae~lP~~aR~~~DglYrAiDiyLk~Hp 419 (584)
.+++........+....+.++.+++.+||||||+||||||+|+||+|+||++|||++|++||++|||||||||||||+||
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~VakLvD~YLaEiA~D~~L~~~kF~~Lae~lP~~aR~~hD~LYrAID~YLk~Hp 234 (258)
T PF03000_consen 155 SQEEEAGEEEESESESGSSPSSSSLVKVAKLVDGYLAEIAPDPNLKPSKFVALAEALPDSARPSHDGLYRAIDIYLKAHP 234 (258)
T ss_pred hcccccccccccccccccCCChHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHCCHhhhhccchHHHHHHHHHHHcc
Confidence 98643111111111122456789999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHhhhccccCCCCCHHHH
Q 007944 420 NLDEIEREKICSSMDPLKLSYEAR 443 (584)
Q Consensus 420 ~l~~~Er~~lC~~~dc~KLS~ea~ 443 (584)
+||++||++||++|||||||+|||
T Consensus 235 ~ls~~Er~~lC~~ldc~KLS~EAC 258 (258)
T PF03000_consen 235 GLSEEERKRLCRLLDCQKLSPEAC 258 (258)
T ss_pred cCCHHHHHHHHhhCCcccCCcccC
Confidence 999999999999999999999998
No 2
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.97 E-value=2.2e-30 Score=290.37 Aligned_cols=231 Identities=25% Similarity=0.421 Sum_probs=212.4
Q ss_pred hHHHhhcCCCccEEEEECCeEEEeeHHHhhccCHHHHHhhc-cCccCCcceEEeCCCCCCHHHHHHHHHHhhcccccCCh
Q 007944 17 GQWVFSQEIPTDIVVAVGEANFPLHKFMLVAKSNYIRKLII-ESKEADLTRINLSNIPGGPEMFEKAAKFCYGVNFEITV 95 (584)
Q Consensus 17 ~~w~~~~~~~sDV~I~V~g~~F~~HK~vLaa~S~yFr~mf~-~~~Es~~~~I~L~di~gg~~aFe~vl~F~Ytg~i~it~ 95 (584)
..-++..+.+|||++.+++++|+|||.||||+|+||++||+ +++|+.+.+|+|.+++ +++++.+++|+||+++.|+.
T Consensus 27 l~~lr~~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~~v~--~~~l~~ll~y~Yt~~i~i~~ 104 (571)
T KOG4441|consen 27 LNELREEGLLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLEGVD--PETLELLLDYAYTGKLEISE 104 (571)
T ss_pred HHHHHHhCCCceEEEEECCeeechHHHHHHhccHHHHHHhcCCcccccceEEEEecCC--HHHHHHHHHHhhcceEEech
Confidence 34588899999999999999999999999999999999999 8999999999999999 99999999999999999999
Q ss_pred hhHHHHHHHHHHccCch--hhhhHhHHHHHHHHHHHHHhhhhhhhHHhhcCHHHHHHHhHHhHHHHHHHHhhhhhhhhcc
Q 007944 96 HNVAALRCAAEFLQMTD--KYCENNLAGRTEDFLSQVALSSLSGAVVVLKSCEALLPLAEDLLIVQRCIDVATAKACYEA 173 (584)
Q Consensus 96 ~NV~~Ll~AA~~Lqm~e--~~c~~nL~~~~e~~ln~~~~~~~adsi~vL~sc~~L~~~Ae~~~I~~rc~d~ia~ka~~~~ 173 (584)
+||++|+.||.+|||++ ++|++||..+. ..-||+++..+++. ++|.+|...|+.| |.++|.++..
T Consensus 105 ~nVq~ll~aA~~lQi~~v~~~C~~fL~~~l-~~~Nclgi~~~a~~----~~~~~L~~~a~~~-i~~~F~~v~~------- 171 (571)
T KOG4441|consen 105 DNVQELLEAASLLQIPEVVDACCEFLESQL-DPSNCLGIRRFAEL----HSCTELLEVADEY-ILQHFAEVSK------- 171 (571)
T ss_pred HhHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CHHHHHHHHHHHHh----cCcHHHHHHHHHH-HHHHHHHHhc-------
Confidence 99999999999999999 99999999999 99999999999997 9999999999999 9999999876
Q ss_pred CCCCCCCCCCcccccccCCHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCccccchHHHHH
Q 007944 174 NFPCRTPPNWWTEELSIIDIEFFSRIIAAMKKRGAKALTIASALITYTERSLRDLVRDHSAGNGTKSSDAQSTNSQVRYQ 253 (584)
Q Consensus 174 ~~~~~~~~dWW~EDl~~L~~d~~~rvI~a~~~~~~~ee~v~~al~~ya~k~l~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 253 (584)
.|||..|+.+.+..+|.....+.-+|+.||++++.|+++..+. | ..+
T Consensus 172 -----------~eefl~L~~~~l~~ll~~d~l~v~~E~~vf~a~~~Wv~~d~~~--R--------------------~~~ 218 (571)
T KOG4441|consen 172 -----------TEEFLLLSLEELIGLLSSDDLNVDSEEEVFEAAMRWVKHDFEE--R--------------------EEH 218 (571)
T ss_pred -----------cHHhhCCCHHHHHhhccccCCCcCCHHHHHHHHHHHHhcCHhh--H--------------------HHH
Confidence 4899999999999999999999999999999999998776543 2 245
Q ss_pred HHHHHHHHHhhCCCCCCCCCHHHHHHHHHhhhhccCChhhHHHHHHHH
Q 007944 254 QRELLESIVSLMPSEKAAFPINFLCCLLRSAIFLKASTSCKNELEKRV 301 (584)
Q Consensus 254 ~r~lLE~Iv~LLP~~k~~vs~~fL~~lLr~a~~l~as~~Cr~~LE~ri 301 (584)
...++++|. + +.++++||.+.+.....+..++.|+..|.+..
T Consensus 219 ~~~ll~~vr-~-----~ll~~~~l~~~v~~~~~~~~~~~c~~~l~ea~ 260 (571)
T KOG4441|consen 219 LPALLEAVR-L-----PLLPPQFLVEIVESEPLIKRDSACRDLLDEAK 260 (571)
T ss_pred HHHHHHhcC-c-----cCCCHHHHHHHHhhhhhhccCHHHHHHHHHHH
Confidence 566777764 2 56999999999999999999999999997766
No 3
>PHA02713 hypothetical protein; Provisional
Probab=99.96 E-value=6.5e-29 Score=278.45 Aligned_cols=229 Identities=19% Similarity=0.224 Sum_probs=195.3
Q ss_pred hhhHHHhhcCCCccEEEEEC-CeEEEeeHHHhhccCHHHHHhhc-cCccCC-cceEEeCCCCCCHHHHHHHHHHhhcccc
Q 007944 15 RTGQWVFSQEIPTDIVVAVG-EANFPLHKFMLVAKSNYIRKLII-ESKEAD-LTRINLSNIPGGPEMFEKAAKFCYGVNF 91 (584)
Q Consensus 15 r~~~w~~~~~~~sDV~I~V~-g~~F~~HK~vLaa~S~yFr~mf~-~~~Es~-~~~I~L~di~gg~~aFe~vl~F~Ytg~i 91 (584)
+...-++.++.+|||+|.|+ |++|+|||.||||+|+||++||+ +++|+. +.+|+|++++ +++|+.+++|+|||+
T Consensus 14 ~~l~~lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~v~--~~~~~~ll~y~Yt~~- 90 (557)
T PHA02713 14 SNISNLLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQMFD--KDAVKNIVQYLYNRH- 90 (557)
T ss_pred HHHHHHHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEeccCC--HHHHHHHHHHhcCCC-
Confidence 44555788899999999998 89999999999999999999999 888764 7899999999 999999999999997
Q ss_pred cCChhhHHHHHHHHHHccCch--hhhhHhHHHHHHHHHHHHHhhhhhhhHHhhcCHHHHHHHhHHhHHHHHHHHhhhhhh
Q 007944 92 EITVHNVAALRCAAEFLQMTD--KYCENNLAGRTEDFLSQVALSSLSGAVVVLKSCEALLPLAEDLLIVQRCIDVATAKA 169 (584)
Q Consensus 92 ~it~~NV~~Ll~AA~~Lqm~e--~~c~~nL~~~~e~~ln~~~~~~~adsi~vL~sc~~L~~~Ae~~~I~~rc~d~ia~ka 169 (584)
|+.+||++|+.||++||++. +.|+++|..++ +.-||+.+..++.. +.|..|...|.+| |.++|.++..
T Consensus 91 -i~~~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l-~~~NCl~i~~~~~~----~~~~~L~~~a~~~-i~~~f~~v~~--- 160 (557)
T PHA02713 91 -ISSMNVIDVLKCADYLLIDDLVTDCESYIKDYT-NHDTCIYMYHRLYE----MSHIPIVKYIKRM-LMSNIPTLIT--- 160 (557)
T ss_pred -CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHhhC-CccchHHHHHHHHh----ccchHHHHHHHHH-HHHHHHHHhC---
Confidence 78999999999999999999 88999998888 77899998876664 7888899999999 9999999875
Q ss_pred hhccCCCCCCCCCCcccccccCCHHHHHHHHHHHh-hCCCChHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCccccch
Q 007944 170 CYEANFPCRTPPNWWTEELSIIDIEFFSRIIAAMK-KRGAKALTIASALITYTERSLRDLVRDHSAGNGTKSSDAQSTNS 248 (584)
Q Consensus 170 ~~~~~~~~~~~~dWW~EDl~~L~~d~~~rvI~a~~-~~~~~ee~v~~al~~ya~k~l~~~~r~~~~~~~~~~~~~~~~~~ 248 (584)
.|+|..|+.+.+..+|+... ....+|+.|++++++|+++.... |
T Consensus 161 ---------------~~ef~~L~~~~l~~lL~~d~~l~v~~Ee~v~eav~~W~~~d~~~--r------------------ 205 (557)
T PHA02713 161 ---------------TDAFKKTVFEILFDIISTNDNVYLYREGYKVTILLKWLEYNYIT--E------------------ 205 (557)
T ss_pred ---------------ChhhhhCCHHHHHHHhccccccCCCcHHHHHHHHHHHHhcCHHH--H------------------
Confidence 38999999999999999876 45668999999999998775432 1
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHhhhhccCChhhHHHHHHHH
Q 007944 249 QVRYQQRELLESIVSLMPSEKAAFPINFLCCLLRSAIFLKASTSCKNELEKRV 301 (584)
Q Consensus 249 ~~~~~~r~lLE~Iv~LLP~~k~~vs~~fL~~lLr~a~~l~as~~Cr~~LE~ri 301 (584)
.+...||+.|. + +.++.++++ .+.....+..++.|+..|++..
T Consensus 206 ---~~~~~ll~~VR--~----~~l~~~~~~-~~~~~~~i~~~~~c~~~l~~a~ 248 (557)
T PHA02713 206 ---EQLLCILSCID--I----QNLDKKSRL-LLYSNKTINMYPSCIQFLLDNK 248 (557)
T ss_pred ---HHHhhhHhhhh--H----hhcchhhhh-hhcchHHHHhhHHHHHHHhhhh
Confidence 22346788875 2 346778877 6667788899999999987643
No 4
>PHA03098 kelch-like protein; Provisional
Probab=99.94 E-value=2.4e-26 Score=255.79 Aligned_cols=221 Identities=16% Similarity=0.192 Sum_probs=189.3
Q ss_pred cCCCccEEEEE--CCeEEEeeHHHhhccCHHHHHhhc-cCccCCcceEEeCCCCCCHHHHHHHHHHhhcccccCChhhHH
Q 007944 23 QEIPTDIVVAV--GEANFPLHKFMLVAKSNYIRKLII-ESKEADLTRINLSNIPGGPEMFEKAAKFCYGVNFEITVHNVA 99 (584)
Q Consensus 23 ~~~~sDV~I~V--~g~~F~~HK~vLaa~S~yFr~mf~-~~~Es~~~~I~L~di~gg~~aFe~vl~F~Ytg~i~it~~NV~ 99 (584)
++.+|||+|.| +|++|+|||.+|+++|+||++||+ +++ +.+|+|++ + +++|+.+++|+|||++.++.+|+.
T Consensus 6 ~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~---~~~i~l~~-~--~~~~~~~l~y~Ytg~~~i~~~~~~ 79 (534)
T PHA03098 6 LQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK---ENEINLNI-D--YDSFNEVIKYIYTGKINITSNNVK 79 (534)
T ss_pred cCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC---CceEEecC-C--HHHHHHHHHHhcCCceEEcHHHHH
Confidence 79999999998 999999999999999999999999 666 56899999 7 999999999999999999999999
Q ss_pred HHHHHHHHccCch--hhhhHhHHHHHHHHHHHHHhhhhhhhHHhhcCHHHHHHHhHHhHHHHHHHHhhhhhhhhccCCCC
Q 007944 100 ALRCAAEFLQMTD--KYCENNLAGRTEDFLSQVALSSLSGAVVVLKSCEALLPLAEDLLIVQRCIDVATAKACYEANFPC 177 (584)
Q Consensus 100 ~Ll~AA~~Lqm~e--~~c~~nL~~~~e~~ln~~~~~~~adsi~vL~sc~~L~~~Ae~~~I~~rc~d~ia~ka~~~~~~~~ 177 (584)
+|+.||++||++. +.|+++|...+ +.-||+.+..+++. ++|..|.+.|.+| |.++|.++..
T Consensus 80 ~ll~~A~~l~~~~l~~~C~~~l~~~l-~~~nc~~~~~~a~~----~~~~~L~~~~~~~-i~~nf~~v~~----------- 142 (534)
T PHA03098 80 DILSIANYLIIDFLINLCINYIIKII-DDNNCIDIYRFSFF----YGCKKLYSAAYNY-IRNNIELIYN----------- 142 (534)
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhC-CHhHHHHHHHHHHH----cCcHHHHHHHHHH-HHHHHHHHhc-----------
Confidence 9999999999999 78888888777 77789999999886 9999999999999 9999988764
Q ss_pred CCCCCCcccccccCCHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCccccchHHHHHHHHH
Q 007944 178 RTPPNWWTEELSIIDIEFFSRIIAAMKKRGAKALTIASALITYTERSLRDLVRDHSAGNGTKSSDAQSTNSQVRYQQREL 257 (584)
Q Consensus 178 ~~~~dWW~EDl~~L~~d~~~rvI~a~~~~~~~ee~v~~al~~ya~k~l~~~~r~~~~~~~~~~~~~~~~~~~~~~~~r~l 257 (584)
.++|..|+.+.+..+|++......+|+.|+++++.|+++.... | ..+...|
T Consensus 143 -------~~~f~~l~~~~l~~ll~~~~L~v~~E~~v~~av~~W~~~~~~~--r--------------------~~~~~~l 193 (534)
T PHA03098 143 -------DPDFIYLSKNELIKILSDDKLNVSSEDVVLEIIIKWLTSKKNN--K--------------------YKDICLI 193 (534)
T ss_pred -------CchhhcCCHHHHHHHhcCCCcCcCCHHHHHHHHHHHHhcChhh--h--------------------HhHHHHH
Confidence 3899999999999999988888889999999999998664322 1 2334567
Q ss_pred HHHHHhhCCCCCCCCCHHHHHHHHH------hhhhccCChhhHHHHHHHHH
Q 007944 258 LESIVSLMPSEKAAFPINFLCCLLR------SAIFLKASTSCKNELEKRVS 302 (584)
Q Consensus 258 LE~Iv~LLP~~k~~vs~~fL~~lLr------~a~~l~as~~Cr~~LE~rig 302 (584)
++.|+- +.++..+|..+.+ ....+ .+..|+..++....
T Consensus 194 l~~vR~------~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 237 (534)
T PHA03098 194 LKVLRI------TFLSEEGIKKLKRWKLRIKKKKIV-FNKRCIKIIYSKKY 237 (534)
T ss_pred Hhhccc------cccCHHHHHHHHHHHhhcCCccee-ccccchHHHHHHHh
Confidence 777742 5689999999876 34444 77889888765543
No 5
>PHA02790 Kelch-like protein; Provisional
Probab=99.94 E-value=5.4e-27 Score=258.72 Aligned_cols=175 Identities=14% Similarity=0.134 Sum_probs=156.3
Q ss_pred HhhcCCCccEEEEECCeEEEeeHHHhhccCHHHHHhhc-cCccCCcceEEe--CCCCCCHHHHHHHHHHhhcccccCChh
Q 007944 20 VFSQEIPTDIVVAVGEANFPLHKFMLVAKSNYIRKLII-ESKEADLTRINL--SNIPGGPEMFEKAAKFCYGVNFEITVH 96 (584)
Q Consensus 20 ~~~~~~~sDV~I~V~g~~F~~HK~vLaa~S~yFr~mf~-~~~Es~~~~I~L--~di~gg~~aFe~vl~F~Ytg~i~it~~ 96 (584)
++.++.+|||++.+| ++|+|||.|||++|+||++||+ +++|+.+ +|.+ .+++ +++|+.+++|+|||++.|+.+
T Consensus 16 ~~~~~~~~~~~~~~~-~~~~~HR~VLAa~S~YFraMF~~~~~Es~~-~v~~~~~~v~--~~~l~~lldy~YTg~l~it~~ 91 (480)
T PHA02790 16 LSMTKKFKTIIEAIG-GNIIVNSTILKKLSPYFRTHLRQKYTKNKD-PVTRVCLDLD--IHSLTSIVIYSYTGKVYIDSH 91 (480)
T ss_pred HHhhhhhceEEEEcC-cEEeeehhhhhhcCHHHHHHhcCCcccccc-ceEEEecCcC--HHHHHHHHHhheeeeEEEecc
Confidence 455789999988665 5899999999999999999999 8998865 5665 3888 999999999999999999999
Q ss_pred hHHHHHHHHHHccCch--hhhhHhHHHHHHHHHHHHHhhhhhhhHHhhcCHHHHHHHhHHhHHHHHHHHhhhhhhhhccC
Q 007944 97 NVAALRCAAEFLQMTD--KYCENNLAGRTEDFLSQVALSSLSGAVVVLKSCEALLPLAEDLLIVQRCIDVATAKACYEAN 174 (584)
Q Consensus 97 NV~~Ll~AA~~Lqm~e--~~c~~nL~~~~e~~ln~~~~~~~adsi~vL~sc~~L~~~Ae~~~I~~rc~d~ia~ka~~~~~ 174 (584)
||++|+.||.+||++. +.|++||..++ +.-||+.+..+++. ++|.+|...|.+| |.++|.++...
T Consensus 92 nV~~ll~aA~~Lqi~~v~~~C~~fL~~~l-~~~NCl~i~~~A~~----y~~~~L~~~a~~f-i~~nF~~v~~~------- 158 (480)
T PHA02790 92 NVVNLLRASILTSVEFIIYTCINFILRDF-RKEYCVECYMMGIE----YGLSNLLCHTKDF-IAKHFLELEDD------- 158 (480)
T ss_pred cHHHHHHHHHHhChHHHHHHHHHHHHhhC-CcchHHHHHHHHHH----hCHHHHHHHHHHH-HHHhHHHHhcc-------
Confidence 9999999999999999 89999999998 88899999999997 9999999999999 99999998631
Q ss_pred CCCCCCCCCcccccccCCHHHHHHHHHHHhhCCCChHHHHHHHHHHHHH
Q 007944 175 FPCRTPPNWWTEELSIIDIEFFSRIIAAMKKRGAKALTIASALITYTER 223 (584)
Q Consensus 175 ~~~~~~~dWW~EDl~~L~~d~~~rvI~a~~~~~~~ee~v~~al~~ya~k 223 (584)
-++||..|++ ..+|++...+..+|+.|++++++|+++
T Consensus 159 ---------~~~ef~~L~~---~~lLssd~L~v~~Ee~V~eav~~Wl~~ 195 (480)
T PHA02790 159 ---------IIDNFDYLSM---KLILESDELNVPDEDYVVDFVIKWYMK 195 (480)
T ss_pred ---------cchhhhhCCH---HHhcccccCCCccHHHHHHHHHHHHHh
Confidence 0378999996 568888888888999999999999874
No 6
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.69 E-value=1.3e-16 Score=140.21 Aligned_cols=102 Identities=33% Similarity=0.520 Sum_probs=89.6
Q ss_pred HhhcCCCccEEEEEC-CeEEEeeHHHhhccCHHHHHhhcc--CccCCcceEEeCCCCCCHHHHHHHHHHhhcccccCC-h
Q 007944 20 VFSQEIPTDIVVAVG-EANFPLHKFMLVAKSNYIRKLIIE--SKEADLTRINLSNIPGGPEMFEKAAKFCYGVNFEIT-V 95 (584)
Q Consensus 20 ~~~~~~~sDV~I~V~-g~~F~~HK~vLaa~S~yFr~mf~~--~~Es~~~~I~L~di~gg~~aFe~vl~F~Ytg~i~it-~ 95 (584)
++.++.++|++|.++ +..|++||.+|+++|+||++||.+ +.+....+|.+++++ +++|+.+++|+|++.+.++ .
T Consensus 4 ~~~~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~l~~~Y~~~~~~~~~ 81 (111)
T PF00651_consen 4 LFNSNEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLPDVS--PEAFEAFLEYMYTGEIEINSD 81 (111)
T ss_dssp HHHHTTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEETTSC--HHHHHHHHHHHHHSEEEEE-T
T ss_pred HHcCCCCCCEEEEECCCEEEeechhhhhccchhhhhccccccccccccccccccccc--ccccccccccccCCcccCCHH
Confidence 566789999999999 899999999999999999999994 456565689999999 9999999999999999998 9
Q ss_pred hhHHHHHHHHHHccCchhhhhHhHHHHHHHHHHH
Q 007944 96 HNVAALRCAAEFLQMTDKYCENNLAGRTEDFLSQ 129 (584)
Q Consensus 96 ~NV~~Ll~AA~~Lqm~e~~c~~nL~~~~e~~ln~ 129 (584)
+++..++.+|++|+|+. |...|++++..
T Consensus 82 ~~~~~ll~lA~~~~~~~------L~~~~~~~l~~ 109 (111)
T PF00651_consen 82 ENVEELLELADKLQIPE------LKKACEKFLQE 109 (111)
T ss_dssp TTHHHHHHHHHHTTBHH------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHH------HHHHHHHHHHh
Confidence 99999999999999999 88888777754
No 7
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.67 E-value=7.1e-16 Score=160.77 Aligned_cols=180 Identities=16% Similarity=0.230 Sum_probs=136.0
Q ss_pred HHhhhHHHhhcCCCccEEEEECCeEEEeeHHHhhccCHHHHHhhc-cCccCCcceEEeCCCCCCHHHHHHHHHHhhcccc
Q 007944 13 KERTGQWVFSQEIPTDIVVAVGEANFPLHKFMLVAKSNYIRKLII-ESKEADLTRINLSNIPGGPEMFEKAAKFCYGVNF 91 (584)
Q Consensus 13 ~~r~~~w~~~~~~~sDV~I~V~g~~F~~HK~vLaa~S~yFr~mf~-~~~Es~~~~I~L~di~gg~~aFe~vl~F~Ytg~i 91 (584)
|.....-++.+..++||+++|+++.|++||.|||+||.|||+|+. +|.|+.+..|.|++.. .++|..+++|+|||++
T Consensus 31 fS~~~~~l~~~e~y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipLq~t~--~eAF~~lLrYiYtg~~ 108 (620)
T KOG4350|consen 31 FSQSFDELFTSEDYSDVTFVVEDTRFPAHRVILAARSSYFRALLYGGMQESHQQLIPLQETN--SEAFRALLRYIYTGKI 108 (620)
T ss_pred hhHHHHHHhhcCcccceEEEEeccccchhhhhHHHHHHHHHHHHhhhhhhhhhccccccccc--HHHHHHHHHHHhhcce
Confidence 333344588889999999999999999999999999999999998 9999999999999998 9999999999999999
Q ss_pred cCCh---hhHHHHHHHHHHccCchhhhhHhHHHHHHHHHHHHH-----hhhhhhhHHhhcCHHHHHHHhHHhHHHHHHHH
Q 007944 92 EITV---HNVAALRCAAEFLQMTDKYCENNLAGRTEDFLSQVA-----LSSLSGAVVVLKSCEALLPLAEDLLIVQRCID 163 (584)
Q Consensus 92 ~it~---~NV~~Ll~AA~~Lqm~e~~c~~nL~~~~e~~ln~~~-----~~~~adsi~vL~sc~~L~~~Ae~~~I~~rc~d 163 (584)
.++. +-..+.+..|..+++.+ |...+.+|+..+. ...|.- +.|++..+|..+|.-| .-.+.-+
T Consensus 109 ~l~~~~ed~lld~LslAh~Ygf~~------Le~aiSeYl~~iL~~~NvCmifda--A~ly~l~~Lt~~C~mf-mDrnA~~ 179 (620)
T KOG4350|consen 109 DLAGVEEDILLDYLSLAHRYGFIQ------LETAISEYLKEILKNENVCMIFDA--AYLYQLTDLTDYCMMF-MDRNADQ 179 (620)
T ss_pred ecccchHHHHHHHHHHHHhcCcHH------HHHHHHHHHHHHHcccceeeeeeH--HHHhcchHHHHHHHHH-HhcCHHh
Confidence 8764 55677888899999988 6666666665432 111111 2367777777766665 3333333
Q ss_pred hhhhhhhhccCCCCCCCCCCcccccccCCHHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Q 007944 164 VATAKACYEANFPCRTPPNWWTEELSIIDIEFFSRIIAAMKKRGAKALTIASALITYTE 222 (584)
Q Consensus 164 ~ia~ka~~~~~~~~~~~~dWW~EDl~~L~~d~~~rvI~a~~~~~~~ee~v~~al~~ya~ 222 (584)
.+. .+.|..|+.+.++.++... +--..|..||-|+..|-+
T Consensus 180 lL~------------------~~sFn~LSk~sL~e~l~RD-sFfApE~~IFlAv~~W~~ 219 (620)
T KOG4350|consen 180 LLE------------------DPSFNRLSKDSLKELLARD-SFFAPELKIFLAVRSWHQ 219 (620)
T ss_pred hhc------------------CcchhhhhHHHHHHHHhhh-cccchHHHHHHHHHHHHh
Confidence 332 3678889999988887632 222466789999977753
No 8
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.60 E-value=3.2e-15 Score=124.20 Aligned_cols=88 Identities=31% Similarity=0.486 Sum_probs=81.2
Q ss_pred cEEEEECCeEEEeeHHHhhccCHHHHHhhc-cCccCCcceEEeCCCCCCHHHHHHHHHHhhcccccCChhhHHHHHHHHH
Q 007944 28 DIVVAVGEANFPLHKFMLVAKSNYIRKLII-ESKEADLTRINLSNIPGGPEMFEKAAKFCYGVNFEITVHNVAALRCAAE 106 (584)
Q Consensus 28 DV~I~V~g~~F~~HK~vLaa~S~yFr~mf~-~~~Es~~~~I~L~di~gg~~aFe~vl~F~Ytg~i~it~~NV~~Ll~AA~ 106 (584)
||++.++|+.|++||.+|+++|+||++||. ++.+.....|.+++++ +++|+.+++|+|++++.++..++..++.+|+
T Consensus 1 dv~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~~~~--~~~f~~~l~~ly~~~~~~~~~~~~~l~~~a~ 78 (90)
T smart00225 1 DVTLVVGGKKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYLDDVS--PEDFRALLEFLYTGKLDLPEENVEELLELAD 78 (90)
T ss_pred CeEEEECCEEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEecCCC--HHHHHHHHHeecCceeecCHHHHHHHHHHHH
Confidence 789999999999999999999999999999 5555567789999988 9999999999999999999999999999999
Q ss_pred HccCchhhhhHhHHHHH
Q 007944 107 FLQMTDKYCENNLAGRT 123 (584)
Q Consensus 107 ~Lqm~e~~c~~nL~~~~ 123 (584)
+|+|++ |+..|
T Consensus 79 ~~~~~~------l~~~c 89 (90)
T smart00225 79 YLQIPG------LVELC 89 (90)
T ss_pred HHCcHH------HHhhh
Confidence 999999 66655
No 9
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=99.57 E-value=3.9e-14 Score=151.12 Aligned_cols=189 Identities=19% Similarity=0.297 Sum_probs=144.7
Q ss_pred hHHHhhhHHHhhcCCCccEEEEECC-----eEEEeeHHHhhccCHHHHHhhc-cCccCCcceEEeCCCCCCHHHHHHHHH
Q 007944 11 SAKERTGQWVFSQEIPTDIVVAVGE-----ANFPLHKFMLVAKSNYIRKLII-ESKEADLTRINLSNIPGGPEMFEKAAK 84 (584)
Q Consensus 11 ~~~~r~~~w~~~~~~~sDV~I~V~g-----~~F~~HK~vLaa~S~yFr~mf~-~~~Es~~~~I~L~di~gg~~aFe~vl~ 84 (584)
+.++....-++.+...+|+.++|++ +.||+||++|+..|..|.+||. ++.+....+|.++|+. |.+|..+++
T Consensus 99 ~t~~er~~~l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~lpdve--paaFl~~L~ 176 (521)
T KOG2075|consen 99 ETMRERQAALFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRLPDVE--PAAFLAFLR 176 (521)
T ss_pred hhHHHhhHhhccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccccCceeecCCcC--hhHhHHHHH
Confidence 4566666678889999999999984 6899999999999999999999 7888777899999999 999999999
Q ss_pred HhhcccccCChhhHHHHHHHHHHccCchhhhhHhHHHHHHHHHHHHHhhhhhhhHHhhcCHHHHHHHhHHhHHHHHHHHh
Q 007944 85 FCYGVNFEITVHNVAALRCAAEFLQMTDKYCENNLAGRTEDFLSQVALSSLSGAVVVLKSCEALLPLAEDLLIVQRCIDV 164 (584)
Q Consensus 85 F~Ytg~i~it~~NV~~Ll~AA~~Lqm~e~~c~~nL~~~~e~~ln~~~~~~~adsi~vL~sc~~L~~~Ae~~~I~~rc~d~ 164 (584)
|+|+..+.+.++|+..++.+|..+-++. |..+|-+|+....+ -.+.+..|.+|..| .++-.+.+.|+++
T Consensus 177 flYsdev~~~~dtvi~tl~~AkKY~Vpa------Ler~CVkflr~~l~--~~naf~~L~q~A~l---f~ep~Li~~c~e~ 245 (521)
T KOG2075|consen 177 FLYSDEVKLAADTVITTLYAAKKYLVPA------LERQCVKFLRKNLM--ADNAFLELFQRAKL---FDEPSLISICLEV 245 (521)
T ss_pred HHhcchhhhhHHHHHHHHHHHHHhhhHH------HHHHHHHHHHHhcC--ChHHHHHHHHHHHh---hcCHHHHHHHHHH
Confidence 9999999999999999999999999999 77777776665431 11222223444322 3334589999999
Q ss_pred hhhhhhhccCCCCCCCCCCcccccccCC--HHHHHHHHHHHhhCCCChHHHHHHHHHHHHH
Q 007944 165 ATAKACYEANFPCRTPPNWWTEELSIID--IEFFSRIIAAMKKRGAKALTIASALITYTER 223 (584)
Q Consensus 165 ia~ka~~~~~~~~~~~~dWW~EDl~~L~--~d~~~rvI~a~~~~~~~ee~v~~al~~ya~k 223 (584)
|...+ .+.. . .|.|.+.. .++|+.|++... ..++|-.+++|+.+|++-
T Consensus 246 id~~~-~~al------~---~EGf~did~~~dt~~evl~r~~-l~~~e~~lfeA~lkw~~~ 295 (521)
T KOG2075|consen 246 IDKSF-EDAL------T---PEGFCDIDSTRDTYEEVLRRDT-LEAREFRLFEAALKWAEA 295 (521)
T ss_pred hhhHH-Hhhh------C---ccceeehhhHHHHHHHHHhhcc-cchhHHHHHHHHHhhccC
Confidence 87422 1110 1 24444444 899988887643 445788899999999864
No 10
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.42 E-value=9.2e-13 Score=126.89 Aligned_cols=156 Identities=17% Similarity=0.314 Sum_probs=121.1
Q ss_pred HHHhhcCCCccEEEEEC---CeEEEeeHHHhhccCHHHHHhhccCccCCcceEEeCCCCCCHHHHHHHHHHhhcccccCC
Q 007944 18 QWVFSQEIPTDIVVAVG---EANFPLHKFMLVAKSNYIRKLIIESKEADLTRINLSNIPGGPEMFEKAAKFCYGVNFEIT 94 (584)
Q Consensus 18 ~w~~~~~~~sDV~I~V~---g~~F~~HK~vLaa~S~yFr~mf~~~~Es~~~~I~L~di~gg~~aFe~vl~F~Ytg~i~it 94 (584)
+-+..++.+||+++.++ ++.+++||+|||+||++++ |.+..+....+..+.|.+ +++|..+++|+||.++++.
T Consensus 58 adL~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~Wk--faN~~dekse~~~~dDad--~Ea~~t~iRWIYTDEidfk 133 (280)
T KOG4591|consen 58 ADLLEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWK--FANGGDEKSEELDLDDAD--FEAFHTAIRWIYTDEIDFK 133 (280)
T ss_pred HHHhhcccccceeEEecCCccccCchhhhhhhhhcchhh--hccCCCcchhhhcccccC--HHHHHHhheeeeccccccc
Confidence 35777899999999998 5789999999999999886 453333344567788999 9999999999999999987
Q ss_pred hhh--HHHHHHHHHHccCchhhhhHhHHHHHHHHHHHHHhhhhhhhHHhhcCHHHHHHHhHHh---HHHHHHHHhhhhhh
Q 007944 95 VHN--VAALRCAAEFLQMTDKYCENNLAGRTEDFLSQVALSSLSGAVVVLKSCEALLPLAEDL---LIVQRCIDVATAKA 169 (584)
Q Consensus 95 ~~N--V~~Ll~AA~~Lqm~e~~c~~nL~~~~e~~ln~~~~~~~adsi~vL~sc~~L~~~Ae~~---~I~~rc~d~ia~ka 169 (584)
.+. ...|+..|..||+.- |.++|+.-+.... +. .+|..+++.|++. .+..-|.+.|+..+
T Consensus 134 ~dD~~L~el~e~An~FqLe~------Lke~C~k~l~a~l--~V-------~NCIk~Ye~AEe~n~~qL~n~~~eiIA~~W 198 (280)
T KOG4591|consen 134 EDDEFLLELCELANRFQLEL------LKERCEKGLGALL--HV-------DNCIKFYEFAEELNARQLMNVAAEIIAGAW 198 (280)
T ss_pred cchHHHHHHHHHHHHHHHHH------HHHHHHHHHhhHh--hH-------hhHHHHHHHHHHhhHHHHHHHHHHHHHhhc
Confidence 765 567889999999988 7777765554433 22 6777778888776 34556777777533
Q ss_pred hhccCCCCCCCCCCcccccccCCHHHHHHHHHHH
Q 007944 170 CYEANFPCRTPPNWWTEELSIIDIEFFSRIIAAM 203 (584)
Q Consensus 170 ~~~~~~~~~~~~dWW~EDl~~L~~d~~~rvI~a~ 203 (584)
++.-.+||+.+++.++.++|...
T Consensus 199 -----------~dL~~a~FaqMs~aLLYklId~k 221 (280)
T KOG4591|consen 199 -----------DDLGKADFAQMSAALLYKLIDGK 221 (280)
T ss_pred -----------cccChHHHHhccHHHHHHHHcCC
Confidence 34456899999999999999764
No 11
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.02 E-value=1.3e-09 Score=114.58 Aligned_cols=183 Identities=18% Similarity=0.228 Sum_probs=141.9
Q ss_pred HHhhhHH----HhhcCCCccEEEEECCeEEEeeHHHhhccCHHHHHhhc-cCccCCcceEEe--CCCCCCHHHHHHHHHH
Q 007944 13 KERTGQW----VFSQEIPTDIVVAVGEANFPLHKFMLVAKSNYIRKLII-ESKEADLTRINL--SNIPGGPEMFEKAAKF 85 (584)
Q Consensus 13 ~~r~~~w----~~~~~~~sDV~I~V~g~~F~~HK~vLaa~S~yFr~mf~-~~~Es~~~~I~L--~di~gg~~aFe~vl~F 85 (584)
...+.+| ++.+|.-+||++.+-|.+.++||.-| ..|+||.+||. .++|++...|.| +|-.....+|..++.-
T Consensus 52 ll~t~kyiyq~lf~q~enSDv~l~alg~eWrlHk~yL-~QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gs 130 (488)
T KOG4682|consen 52 LLQTQKYIYQNLFLQGENSDVILEALGFEWRLHKPYL-FQSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGS 130 (488)
T ss_pred HHHHHHHHHHHHHhcCCCcceehhhccceeeeeeeee-eccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhh
Confidence 3444555 46789999999999999999999988 68999999999 688888776655 4544449999999999
Q ss_pred hhcccccCChhhHHHHHHHHHHccCchhhhhHhHHHHHHHHHHHHHhhhhhhhHHhhcCHHHHHHHhHHhH---HHHHHH
Q 007944 86 CYGVNFEITVHNVAALRCAAEFLQMTDKYCENNLAGRTEDFLSQVALSSLSGAVVVLKSCEALLPLAEDLL---IVQRCI 162 (584)
Q Consensus 86 ~Ytg~i~it~~NV~~Ll~AA~~Lqm~e~~c~~nL~~~~e~~ln~~~~~~~adsi~vL~sc~~L~~~Ae~~~---I~~rc~ 162 (584)
+|..+|+|..+.|..++.||.+|++.. |+++|.+.+.... +. .+...+++.+..|| +.+.|.
T Consensus 131 LY~dEveI~l~dv~gvlAaA~~lqldg------l~qrC~evMie~l--sp-------kta~~yYea~ckYgle~vk~kc~ 195 (488)
T KOG4682|consen 131 LYRDEVEIKLSDVVGVLAAACLLQLDG------LIQRCGEVMIETL--SP-------KTACGYYEAACKYGLESVKKKCL 195 (488)
T ss_pred hhhhheeccHHHHHHHHHHHHHHHHhh------HHHHHHHHHHHhc--Ch-------hhhhHhhhhhhhhhhHHHHHHHH
Confidence 999999999999999999999999999 8888855554322 22 44556777888886 456888
Q ss_pred HhhhhhhhhccCCCCCCCCCCcccccccCCHHHHHHHHHHHhhCCCC-hHHHHHHHHHHH
Q 007944 163 DVATAKACYEANFPCRTPPNWWTEELSIIDIEFFSRIIAAMKKRGAK-ALTIASALITYT 221 (584)
Q Consensus 163 d~ia~ka~~~~~~~~~~~~dWW~EDl~~L~~d~~~rvI~a~~~~~~~-ee~v~~al~~ya 221 (584)
+++..+.-.-. . ..-|-+++.+++..++.+=++-.+. |-.++..+..|.
T Consensus 196 ewl~~nl~~i~-----~-----~q~l~ei~~~Lm~~ll~SpnLfvmq~EfdLyttlk~Wm 245 (488)
T KOG4682|consen 196 EWLLNNLMTIQ-----N-----VQLLKEISINLMKQLLGSPNLFVMQVEFDLYTTLKKWM 245 (488)
T ss_pred HHHHHhhHhhh-----h-----HHHHHhcCHHHHHHHhCCCCeEEEEeeehHHHHHHHHH
Confidence 88765432110 0 1367889999999999877666665 667999987775
No 12
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.92 E-value=1.4e-09 Score=122.12 Aligned_cols=166 Identities=16% Similarity=0.235 Sum_probs=108.6
Q ss_pred CccEEEEE-CCeEEEeeHHHhhccCHHHHHhhc-cCccCCcceEEeCCCCCCHHHHHHHHHHhh-cccccC-----Chhh
Q 007944 26 PTDIVVAV-GEANFPLHKFMLVAKSNYIRKLII-ESKEADLTRINLSNIPGGPEMFEKAAKFCY-GVNFEI-----TVHN 97 (584)
Q Consensus 26 ~sDV~I~V-~g~~F~~HK~vLaa~S~yFr~mf~-~~~Es~~~~I~L~di~gg~~aFe~vl~F~Y-tg~i~i-----t~~N 97 (584)
.-|+.|.. +|+.|+|||++|++|++||..||. -+.|+....+ .++|...+.++.+++|+| +.++.+ ..+-
T Consensus 710 ~~d~~i~~KDGkvl~aHkc~L~aRlEYF~smf~~~w~E~sS~t~--~~~p~~~e~m~ivLdylYs~d~~~~~k~~~~~dF 787 (1267)
T KOG0783|consen 710 TMDTVIKLKDGKVLKAHKCFLSARLEYFSSMFQFVWMESSSITV--NLSPLTVEHMSIVLDYLYSDDKVELFKDLKESDF 787 (1267)
T ss_pred ceeEEEEecCCcCcccceeEeeeHHHHHHHHHHHHHhhhcccee--ecCcchHHHHHHHHHHHHccchHHHHhccchhhh
Confidence 33555555 788899999999999999999999 7777776444 444444999999999999 455543 2344
Q ss_pred HHHHHHHHHHccCch--hhhhHhHHHHHHHHHHHHHhhhhhhhHHhhcCHHHHHHHhHHhHHHHHHHHhhhhhhhhccCC
Q 007944 98 VAALRCAAEFLQMTD--KYCENNLAGRTEDFLSQVALSSLSGAVVVLKSCEALLPLAEDLLIVQRCIDVATAKACYEANF 175 (584)
Q Consensus 98 V~~Ll~AA~~Lqm~e--~~c~~nL~~~~e~~ln~~~~~~~adsi~vL~sc~~L~~~Ae~~~I~~rc~d~ia~ka~~~~~~ 175 (584)
+..++..|+.|-+.+ +.|+.-|.+++ +.-++-.+..|+- +|+|+.|..-|.+| |..+..-++..
T Consensus 788 ~~~il~iaDqlli~~Lk~Ice~~ll~kl-~lk~~~~llefaa----mY~ak~L~~~C~df-ic~N~~~~Lea-------- 853 (1267)
T KOG0783|consen 788 MFEILSIADQLLILELKSICEQSLLRKL-NLKTLPTLLEFAA----MYHAKELYSRCIDF-ICHNIEFFLEA-------- 853 (1267)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHh-cccchHHHHHHHH----HhhHHHHHHHHHHH-HHHhHHHHHHh--------
Confidence 778999999999999 34444444333 2223333334433 57888777777777 66655544432
Q ss_pred CCCCCCCCcccccccCCHHHHHHHHHHHhhCCCCh
Q 007944 176 PCRTPPNWWTEELSIIDIEFFSRIIAAMKKRGAKA 210 (584)
Q Consensus 176 ~~~~~~dWW~EDl~~L~~d~~~rvI~a~~~~~~~e 210 (584)
++-..|-.+-+..| .++|.+++..|..+.+.|
T Consensus 854 --rsi~~~dg~~LK~l-~~~yrkm~~vfD~RvitP 885 (1267)
T KOG0783|consen 854 --RSISEWDGFHLKKL-AQRYRKMLSVFDQRVITP 885 (1267)
T ss_pred --ccHhhhcchHHHHH-HHHHHHHhhhccceeecc
Confidence 12223323333333 367788888777666543
No 13
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.44 E-value=2.9e-07 Score=103.87 Aligned_cols=66 Identities=33% Similarity=0.603 Sum_probs=55.6
Q ss_pred cCCCccEEEEECCeEEEeeHHHhhccCHHHHHhhc---cCcc----------CCcceEEeCCCCCCHHHHHHHHHHhhcc
Q 007944 23 QEIPTDIVVAVGEANFPLHKFMLVAKSNYIRKLII---ESKE----------ADLTRINLSNIPGGPEMFEKAAKFCYGV 89 (584)
Q Consensus 23 ~~~~sDV~I~V~g~~F~~HK~vLaa~S~yFr~mf~---~~~E----------s~~~~I~L~di~gg~~aFe~vl~F~Ytg 89 (584)
.+.+.|||+.||+..|++||+||+++|++|+++|- +..+ +..+.|.+.+++ |.+||.++.|+||.
T Consensus 555 ~ds~hDVtf~vg~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~i~--p~mfe~lL~~iYtd 632 (1267)
T KOG0783|consen 555 KDSFHDVTFYVGTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVEDIP--PLMFEILLHYIYTD 632 (1267)
T ss_pred ccccceEEEEecCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeeeccCC--HHHHHHHHHHHhcc
Confidence 35688999999999999999999999999999997 1211 223456688999 99999999999998
Q ss_pred c
Q 007944 90 N 90 (584)
Q Consensus 90 ~ 90 (584)
.
T Consensus 633 t 633 (1267)
T KOG0783|consen 633 T 633 (1267)
T ss_pred c
Confidence 5
No 14
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=97.92 E-value=6e-06 Score=71.62 Aligned_cols=102 Identities=14% Similarity=0.171 Sum_probs=75.6
Q ss_pred HHHhhhhhhhHHhhcCHHHHHHHhHHhHHHHHHHHhhhhhhhhccCCCCCCCCCCcccccccCCHHHHHHHHHHHhhCCC
Q 007944 129 QVALSSLSGAVVVLKSCEALLPLAEDLLIVQRCIDVATAKACYEANFPCRTPPNWWTEELSIIDIEFFSRIIAAMKKRGA 208 (584)
Q Consensus 129 ~~~~~~~adsi~vL~sc~~L~~~Ae~~~I~~rc~d~ia~ka~~~~~~~~~~~~dWW~EDl~~L~~d~~~rvI~a~~~~~~ 208 (584)
|+.+..+++. ++|.+|...|.+| |..+|.+++. .++|..||.+.+..+++.......
T Consensus 1 C~~i~~~A~~----~~~~~L~~~~~~~-i~~nf~~v~~------------------~~~f~~L~~~~l~~iL~~~~l~v~ 57 (103)
T PF07707_consen 1 CLSIYRLAEK----YGLEELAEACLRF-IAKNFNEVSK------------------SDEFLELPFDQLIEILSSDDLNVS 57 (103)
T ss_dssp HHHHHHHHHH----TT-HHHHHHHHHH-HHHTHHHHTT------------------SHHHHCS-HHHHHHHHHTSS--EC
T ss_pred ChhHHHHHHH----cChHHHHHHHHHH-HHHHHHHHcc------------------chhhhcCCHHHHHHHHhccccccc
Confidence 5677788886 9999999999999 9999999875 379999999999999998777777
Q ss_pred ChHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCccccchHHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHH
Q 007944 209 KALTIASALITYTERSLRDLVRDHSAGNGTKSSDAQSTNSQVRYQQRELLESIVSLMPSEKAAFPINFLCCLL 281 (584)
Q Consensus 209 ~ee~v~~al~~ya~k~l~~~~r~~~~~~~~~~~~~~~~~~~~~~~~r~lLE~Iv~LLP~~k~~vs~~fL~~lL 281 (584)
+|..|+++++.|+++..+. | ......|++.|.- +.+|.++|.+.+
T Consensus 58 ~E~~v~~av~~W~~~~~~~--r--------------------~~~~~~Ll~~iR~------~~l~~~~L~~~v 102 (103)
T PF07707_consen 58 SEDDVFEAVLRWLKHNPEN--R--------------------EEHLKELLSCIRF------PLLSPEELQNVV 102 (103)
T ss_dssp TCCCHHHHHHHHHHCTHHH--H--------------------TTTHHHHHCCCHH------HCT-HHHHHHCC
T ss_pred cHHHHHHHHHHHHHhCHHH--H--------------------HHHHHHHHHhCCc------ccCCHHHHHHHH
Confidence 8999999999998776543 2 1234555655542 568888887643
No 15
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=97.66 E-value=0.00027 Score=60.51 Aligned_cols=72 Identities=15% Similarity=0.259 Sum_probs=60.1
Q ss_pred HHhhhhhhhHHhhcCHHHHHHHhHHhHHHHHHHHhhhhhhhhccCCCCCCCCCCcccccccCCHHHHHHHHHHHhhCCCC
Q 007944 130 VALSSLSGAVVVLKSCEALLPLAEDLLIVQRCIDVATAKACYEANFPCRTPPNWWTEELSIIDIEFFSRIIAAMKKRGAK 209 (584)
Q Consensus 130 ~~~~~~adsi~vL~sc~~L~~~Ae~~~I~~rc~d~ia~ka~~~~~~~~~~~~dWW~EDl~~L~~d~~~rvI~a~~~~~~~ 209 (584)
+.+..+++. ++|..|...|..| |..+|.++.. .++|..|+.+.+..+|+.......+
T Consensus 2 ~~i~~~a~~----~~~~~L~~~~~~~-i~~nf~~~~~------------------~~~f~~L~~~~l~~iL~~d~l~v~~ 58 (101)
T smart00875 2 LGIRRFAEL----YGLEELLEKALRF-ILKNFLEVAQ------------------SEEFLELSLEQLLSLLSSDDLNVPS 58 (101)
T ss_pred HhHHHHHHH----hChHHHHHHHHHH-HHHHHHHHhc------------------CcHHhcCCHHHHHHHhCcccCCCCC
Confidence 445566664 8999999999999 9999887643 3799999999999999988887778
Q ss_pred hHHHHHHHHHHHHHh
Q 007944 210 ALTIASALITYTERS 224 (584)
Q Consensus 210 ee~v~~al~~ya~k~ 224 (584)
|+.++++++.|+++.
T Consensus 59 E~~v~~av~~W~~~~ 73 (101)
T smart00875 59 EEEVFEAVLRWVKHD 73 (101)
T ss_pred HHHHHHHHHHHHHCC
Confidence 999999998888654
No 16
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=97.11 E-value=0.0006 Score=69.47 Aligned_cols=99 Identities=17% Similarity=0.220 Sum_probs=71.0
Q ss_pred HHHhhhHHHhhcCCCccEEEEECCeEEEeeHHHhhccCHHHHHhhccCccC---CcceEEeCCCCCCHHHHHHHHHHhhc
Q 007944 12 AKERTGQWVFSQEIPTDIVVAVGEANFPLHKFMLVAKSNYIRKLIIESKEA---DLTRINLSNIPGGPEMFEKAAKFCYG 88 (584)
Q Consensus 12 ~~~r~~~w~~~~~~~sDV~I~V~g~~F~~HK~vLaa~S~yFr~mf~~~~Es---~~~~I~L~di~gg~~aFe~vl~F~Yt 88 (584)
++.+..+-.+......|+-|......|++||++|++||++|+.+.....+. ....|..-+++ -++|+.++.|.|+
T Consensus 116 sf~kD~ad~ye~k~c~dldiiFkeTcfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~ag~d--m~~feafLh~l~t 193 (401)
T KOG2838|consen 116 SFLKDFADGYERKVCGDLDIIFKETCFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKFAGFD--MDAFEAFLHSLIT 193 (401)
T ss_pred HHHHHHhhhhheeeeccceeeeeeccchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhhhccC--hHHHHHHHHHHHh
Confidence 344444434445677899999999999999999999999999888722222 23456667888 8999999999999
Q ss_pred ccccC---ChhhHHHHHHHHHHccCch
Q 007944 89 VNFEI---TVHNVAALRCAAEFLQMTD 112 (584)
Q Consensus 89 g~i~i---t~~NV~~Ll~AA~~Lqm~e 112 (584)
|+.-. .-.|+.-|-...+-++-..
T Consensus 194 gEfgmEd~~fqn~diL~QL~edFG~~k 220 (401)
T KOG2838|consen 194 GEFGMEDLGFQNSDILEQLCEDFGCFK 220 (401)
T ss_pred cccchhhcCCchHHHHHHHHHhhCCch
Confidence 98653 3345555555555555444
No 17
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=97.07 E-value=0.00088 Score=57.82 Aligned_cols=81 Identities=19% Similarity=0.249 Sum_probs=61.2
Q ss_pred EEEEECCeEEEeeHHHhh-ccCHHHHHhhcc----CccCCcceEEeCCCCCCHHHHHHHHHHhhc-ccccCC-hhhHHHH
Q 007944 29 IVVAVGEANFPLHKFMLV-AKSNYIRKLIIE----SKEADLTRINLSNIPGGPEMFEKAAKFCYG-VNFEIT-VHNVAAL 101 (584)
Q Consensus 29 V~I~V~g~~F~~HK~vLa-a~S~yFr~mf~~----~~Es~~~~I~L~di~gg~~aFe~vl~F~Yt-g~i~it-~~NV~~L 101 (584)
|+|.|||+.|.+-+..|. ....+|.+|+.. ........+-| |-+ |+.|+.|++|+-+ +.+... ...+..+
T Consensus 1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fi-DRd--p~~F~~IL~ylr~~~~l~~~~~~~~~~l 77 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFI-DRD--PELFEYILNYLRTGGKLPIPDEICLEEL 77 (94)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEE-SS---HHHHHHHHHHHHHTSSB---TTS-HHHH
T ss_pred CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEe-ccC--hhhhhHHHHHHhhcCccCCCCchhHHHH
Confidence 689999999999999999 556789999983 22344455555 566 9999999999999 677654 5568889
Q ss_pred HHHHHHccCch
Q 007944 102 RCAAEFLQMTD 112 (584)
Q Consensus 102 l~AA~~Lqm~e 112 (584)
+.-|+|+++.+
T Consensus 78 ~~Ea~fy~l~~ 88 (94)
T PF02214_consen 78 LEEAEFYGLDE 88 (94)
T ss_dssp HHHHHHHT-HH
T ss_pred HHHHHHcCCCc
Confidence 99999999998
No 18
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=96.94 E-value=0.004 Score=55.07 Aligned_cols=79 Identities=19% Similarity=0.303 Sum_probs=60.7
Q ss_pred EEEEE-CCeEEEeeHHHhhccCHHHHHhhccCc--cCCcceEEeCCCCCCHHHHHHHHHHhhcccc--------------
Q 007944 29 IVVAV-GEANFPLHKFMLVAKSNYIRKLIIESK--EADLTRINLSNIPGGPEMFEKAAKFCYGVNF-------------- 91 (584)
Q Consensus 29 V~I~V-~g~~F~~HK~vLaa~S~yFr~mf~~~~--Es~~~~I~L~di~gg~~aFe~vl~F~Ytg~i-------------- 91 (584)
|+++. +|..|.+.+.+. ..|+.++.|+.+.. +.....|.|++++ ..+++.+++||+--+-
T Consensus 4 v~L~S~Dg~~f~v~~~~a-~~S~~i~~~l~~~~~~~~~~~~Ipl~~v~--~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~w 80 (104)
T smart00512 4 IKLISSDGEVFEVEREVA-RQSKTIKAMIEDLGVDDENNNPIPLPNVT--SKILSKVIEYCEHHVDDPPSVADKDDIPTW 80 (104)
T ss_pred EEEEeCCCCEEEecHHHH-HHHHHHHHHHHccCcccCCCCCccCCCcC--HHHHHHHHHHHHHcccCCCCccccccccHH
Confidence 45544 789999999976 69999999998322 2222579999999 8999999999985211
Q ss_pred -----cCChhhHHHHHHHHHHccC
Q 007944 92 -----EITVHNVAALRCAAEFLQM 110 (584)
Q Consensus 92 -----~it~~NV~~Ll~AA~~Lqm 110 (584)
.+..+.+.+|+.||+||++
T Consensus 81 D~~F~~~d~~~l~dLl~AAnyL~I 104 (104)
T smart00512 81 DAEFLKIDQETLFELILAANYLDI 104 (104)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCC
Confidence 1556678899999999975
No 19
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]
Probab=96.93 E-value=0.0039 Score=62.93 Aligned_cols=94 Identities=16% Similarity=0.277 Sum_probs=75.2
Q ss_pred EEEEECCeEEEeeHHHhhccCHHHHHhhc-cCc-cCCcceEEeCCCCCCHHHHHHHHHHhhcccccCCh--hhHHHHHHH
Q 007944 29 IVVAVGEANFPLHKFMLVAKSNYIRKLII-ESK-EADLTRINLSNIPGGPEMFEKAAKFCYGVNFEITV--HNVAALRCA 104 (584)
Q Consensus 29 V~I~V~g~~F~~HK~vLaa~S~yFr~mf~-~~~-Es~~~~I~L~di~gg~~aFe~vl~F~Ytg~i~it~--~NV~~Ll~A 104 (584)
|.+.|||..|..+|.-|.-..++|++|+. +.. +.+.+.-.+-|-+ |.-|+.+|+|+=.|.+.+.. .++.+|+.=
T Consensus 7 vkLnvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFIDRS--pKHF~~ILNfmRdGdv~LPe~~kel~El~~E 84 (230)
T KOG2716|consen 7 VKLNVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFIDRS--PKHFDTILNFMRDGDVDLPESEKELKELLRE 84 (230)
T ss_pred EEEecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEecCC--hhHHHHHHHhhhcccccCccchHHHHHHHHH
Confidence 56899999999999999999999999998 432 2222223344556 89999999999988888654 567899999
Q ss_pred HHHccCchhhhhHhHHHHHHHHHHHH
Q 007944 105 AEFLQMTDKYCENNLAGRTEDFLSQV 130 (584)
Q Consensus 105 A~~Lqm~e~~c~~nL~~~~e~~ln~~ 130 (584)
|+||.+++ |++.|+.-+...
T Consensus 85 A~fYlL~~------Lv~~C~~~i~~~ 104 (230)
T KOG2716|consen 85 AEFYLLDG------LVELCQSAIARL 104 (230)
T ss_pred HHHhhHHH------HHHHHHHHhhhc
Confidence 99999999 999996655554
No 20
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=96.82 E-value=0.0012 Score=69.25 Aligned_cols=91 Identities=22% Similarity=0.371 Sum_probs=71.2
Q ss_pred EEEEECC------eEEEeeHHHhhccCHHHHHhhcc-Cc-cCCcceEEeC-CCCCCHHHHHHHHHHhhcccccCChhhHH
Q 007944 29 IVVAVGE------ANFPLHKFMLVAKSNYIRKLIIE-SK-EADLTRINLS-NIPGGPEMFEKAAKFCYGVNFEITVHNVA 99 (584)
Q Consensus 29 V~I~V~g------~~F~~HK~vLaa~S~yFr~mf~~-~~-Es~~~~I~L~-di~gg~~aFe~vl~F~Ytg~i~it~~NV~ 99 (584)
|+|.|-| +.|.|.+..|...=.||+..+.. .+ .....+|+|. .-+ -.+|+-+++|+++....+++.||.
T Consensus 1 v~ihV~De~~~~~rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idisVhCD--v~iF~WLm~yv~~~~p~l~~~Nvv 78 (317)
T PF11822_consen 1 VVIHVCDEARNEKRDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDISVHCD--VHIFEWLMRYVKGEPPSLTPSNVV 78 (317)
T ss_pred CEEEEEcCCCCcceeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceEEecC--hhHHHHHHHHhhcCCCcCCcCcEE
Confidence 5677733 57999999999999999999952 11 1222345554 222 579999999999999999999999
Q ss_pred HHHHHHHHccCchhhhhHhHHHHHHHHH
Q 007944 100 ALRCAAEFLQMTDKYCENNLAGRTEDFL 127 (584)
Q Consensus 100 ~Ll~AA~~Lqm~e~~c~~nL~~~~e~~l 127 (584)
+++--|+||||++ |++.|-.|.
T Consensus 79 sIliSS~FL~M~~------Lve~cl~y~ 100 (317)
T PF11822_consen 79 SILISSEFLQMES------LVEECLQYC 100 (317)
T ss_pred EeEehhhhhccHH------HHHHHHHHH
Confidence 9999999999999 777775554
No 21
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=96.17 E-value=0.021 Score=49.98 Aligned_cols=78 Identities=22% Similarity=0.398 Sum_probs=62.2
Q ss_pred EEEEE-CCeEEEeeHHHhhccCHHHHHhhcc---CccCCcceEEeCCCCCCHHHHHHHHHHh-----hccc------ccC
Q 007944 29 IVVAV-GEANFPLHKFMLVAKSNYIRKLIIE---SKEADLTRINLSNIPGGPEMFEKAAKFC-----YGVN------FEI 93 (584)
Q Consensus 29 V~I~V-~g~~F~~HK~vLaa~S~yFr~mf~~---~~Es~~~~I~L~di~gg~~aFe~vl~F~-----Ytg~------i~i 93 (584)
|.++- +|..|-.-|- +|.-|+-+|+||++ ..+....+|.+++|+ +..++.+..|+ |++. ++|
T Consensus 19 VkLvS~Ddhefiikre-~AmtSgTiraml~gpg~~se~~~n~v~f~di~--shiLeKvc~Yl~Yk~rY~~~s~eiPeF~I 95 (112)
T KOG3473|consen 19 VKLVSSDDHEFIIKRE-HAMTSGTIRAMLSGPGVFSEAEKNEVYFRDIP--SHILEKVCEYLAYKVRYTNSSTEIPEFDI 95 (112)
T ss_pred eEeecCCCcEEEEeeh-hhhhhhHHHHHHcCCccccccccceEEeccch--HHHHHHHHHHhhheeeeccccccCCCCCC
Confidence 34444 5677777665 67889999999992 456777889999999 99999999886 4443 568
Q ss_pred ChhhHHHHHHHHHHcc
Q 007944 94 TVHNVAALRCAAEFLQ 109 (584)
Q Consensus 94 t~~NV~~Ll~AA~~Lq 109 (584)
.++-+.+|+.||+||+
T Consensus 96 ppemaleLL~aAn~Le 111 (112)
T KOG3473|consen 96 PPEMALELLMAANYLE 111 (112)
T ss_pred CHHHHHHHHHHhhhhc
Confidence 8899999999999986
No 22
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=95.75 E-value=0.056 Score=43.42 Aligned_cols=56 Identities=16% Similarity=0.353 Sum_probs=44.7
Q ss_pred EEEEE-CCeEEEeeHHHhhccCHHHHHhhccCccCCcceEEeCCCCCCHHHHHHHHHHhhc
Q 007944 29 IVVAV-GEANFPLHKFMLVAKSNYIRKLIIESKEADLTRINLSNIPGGPEMFEKAAKFCYG 88 (584)
Q Consensus 29 V~I~V-~g~~F~~HK~vLaa~S~yFr~mf~~~~Es~~~~I~L~di~gg~~aFe~vl~F~Yt 88 (584)
|+++. +|+.|.+.+.+. ..|+.++.|+.+..+... .|.|++++ +.+++.+++||+-
T Consensus 3 v~L~SsDg~~f~V~~~~a-~~S~~i~~ml~~~~~~~~-~Ipl~~v~--~~~L~kViewc~~ 59 (62)
T PF03931_consen 3 VKLVSSDGQEFEVSREAA-KQSKTIKNMLEDLGDEDE-PIPLPNVS--SRILKKVIEWCEH 59 (62)
T ss_dssp EEEEETTSEEEEEEHHHH-TTSHHHHHHHHCTCCCGT-EEEETTS---HHHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEeeHHHH-HHhHHHHHHHhhhccccc-ccccCccC--HHHHHHHHHHHHh
Confidence 45544 789999999876 599999999985544333 79999999 8999999999973
No 23
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=95.64 E-value=0.042 Score=58.66 Aligned_cols=74 Identities=15% Similarity=0.266 Sum_probs=60.8
Q ss_pred eEEEeeHHHhhccCHHHHHhhc-cCccCC-c---ceEEeCCCCCCHHHHHHHHHHhhcccccCChhhHHHHHHHHHHccC
Q 007944 36 ANFPLHKFMLVAKSNYIRKLII-ESKEAD-L---TRINLSNIPGGPEMFEKAAKFCYGVNFEITVHNVAALRCAAEFLQM 110 (584)
Q Consensus 36 ~~F~~HK~vLaa~S~yFr~mf~-~~~Es~-~---~~I~L~di~gg~~aFe~vl~F~Ytg~i~it~~NV~~Ll~AA~~Lqm 110 (584)
..+|||..++ .|++||+.||. ++.|+. . ....++++. ..+.+.+++|.|+.+.+|.++-+..++-.|+.+-+
T Consensus 301 ~RyP~hla~i-~R~eyfk~mf~g~f~e~s~n~~~p~lslp~~~--~~vveI~lr~lY~d~tdi~~~~A~dvll~ad~lal 377 (516)
T KOG0511|consen 301 DRYPAHLARI-LRVEYFKSMFVGDFIESSVNDTRPGLSLPSLA--DVVVEIDLRNLYCDQTDIIFDVASDVLLFADKLAL 377 (516)
T ss_pred ccccHHHHHH-HHHHHHHHHhccchhhhcCCccccccccchHH--HHHHHHHHHHhhcccccchHHHHhhHHHHhhHhhh
Confidence 4599999988 58999999999 676643 2 233455566 78899999999999999999999999999999887
Q ss_pred ch
Q 007944 111 TD 112 (584)
Q Consensus 111 ~e 112 (584)
..
T Consensus 378 ~~ 379 (516)
T KOG0511|consen 378 AD 379 (516)
T ss_pred hh
Confidence 75
No 24
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=95.00 E-value=0.029 Score=59.87 Aligned_cols=122 Identities=17% Similarity=0.021 Sum_probs=72.9
Q ss_pred HhhcCC--CccEEEEE-CCeEEEeeHHHhhccCHHHHHhhccCccCCcceEEeCCCCCCHHHHHHHHHHhhcccccCChh
Q 007944 20 VFSQEI--PTDIVVAV-GEANFPLHKFMLVAKSNYIRKLIIESKEADLTRINLSNIPGGPEMFEKAAKFCYGVNFEITVH 96 (584)
Q Consensus 20 ~~~~~~--~sDV~I~V-~g~~F~~HK~vLaa~S~yFr~mf~~~~Es~~~~I~L~di~gg~~aFe~vl~F~Ytg~i~it~~ 96 (584)
++.++. ..|+++.+ +|..|.+||+.|+++|.+|..-+..+- ....+|+-..+- +.+|+.+++|.|-..-.+-++
T Consensus 141 l~dt~l~~~~di~f~~q~g~~f~ahkfll~arSs~~~~k~v~~~-~~~heI~~~~v~--~~~f~~flk~lyl~~na~~~~ 217 (516)
T KOG0511|consen 141 LRDTFLGCCHDIDFLQQEGANFDAHKFLLEARSSNYFPKDVMFY-VQGHEIEAHRVI--LSAFSPFLKQLYLNTNAEWKD 217 (516)
T ss_pred hhccccccccchHHHhhccccccHHHHHHHhhhcccCchhhhhc-cccCchhhhhhh--HhhhhHHHHHHHHhhhhhhhh
Confidence 344444 45888876 578899999999999998754433111 112344334444 799999999999763333344
Q ss_pred hHHHHHHHHHHccCchhhhhHhHHHHHHHHHHHHHhhhhhhhHHhhcCHHHHHHHhHHh
Q 007944 97 NVAALRCAAEFLQMTDKYCENNLAGRTEDFLSQVALSSLSGAVVVLKSCEALLPLAEDL 155 (584)
Q Consensus 97 NV~~Ll~AA~~Lqm~e~~c~~nL~~~~e~~ln~~~~~~~adsi~vL~sc~~L~~~Ae~~ 155 (584)
.-.+|+.....|+... |....+.--.....+.|+. +.|+.....-+++
T Consensus 218 qynallsi~~kF~~e~------l~~~~~kdr~~~~sR~~k~-----~q~~~tq~~~~~~ 265 (516)
T KOG0511|consen 218 QYNALLSIEVKFSKEK------LSLEISKDRMEDLSRICKV-----CQCESTQKIIEKE 265 (516)
T ss_pred HHHHHHhhhhhccHHH------hHHHHhhhHHHHHHHHHHH-----HhHHHHHHHHHHH
Confidence 4466777777777666 4433322222233445555 5666555444444
No 25
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=94.83 E-value=0.038 Score=56.69 Aligned_cols=57 Identities=21% Similarity=0.393 Sum_probs=40.6
Q ss_pred EEEeeHHHhhccCHHHHHhhc-cCc---c------CCcceEEeCCCCCCHHHHHH-HHHHhhcccccCC
Q 007944 37 NFPLHKFMLVAKSNYIRKLII-ESK---E------ADLTRINLSNIPGGPEMFEK-AAKFCYGVNFEIT 94 (584)
Q Consensus 37 ~F~~HK~vLaa~S~yFr~mf~-~~~---E------s~~~~I~L~di~gg~~aFe~-vl~F~Ytg~i~it 94 (584)
++.|||.|.++||++||.++. ..+ | .....|.+.+.-- |.+|.. ++.|+||..++++
T Consensus 262 eikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~PkRIifdE~I~-PkafA~i~lhclYTD~lDlS 329 (401)
T KOG2838|consen 262 EIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRRPKRIIFDELIF-PKAFAPIFLHCLYTDRLDLS 329 (401)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccCCceeechhhhc-chhhhhhhhhhheecccchh
Confidence 589999999999999999986 222 1 1234566654221 577764 5789999998864
No 26
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]
Probab=92.35 E-value=0.51 Score=45.47 Aligned_cols=75 Identities=19% Similarity=0.319 Sum_probs=57.7
Q ss_pred CCeEEEeeHHHhhccCHHHHHhhcc--CccCCcceEEeCCCCCCHHHHHHHHHHhhcccc--------------------
Q 007944 34 GEANFPLHKFMLVAKSNYIRKLIIE--SKEADLTRINLSNIPGGPEMFEKAAKFCYGVNF-------------------- 91 (584)
Q Consensus 34 ~g~~F~~HK~vLaa~S~yFr~mf~~--~~Es~~~~I~L~di~gg~~aFe~vl~F~Ytg~i-------------------- 91 (584)
+|+.|.+-..+. ..|.-+..++.+ ..... ..|-|+++. +.+|..|++|||--+-
T Consensus 13 DG~~f~ve~~~a-~~s~~i~~~~~~~~~~~~~-~~IPl~nV~--~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~~W 88 (162)
T KOG1724|consen 13 DGEIFEVEEEVA-RQSQTISAHMIEDGCADEN-DPIPLPNVT--SKILKKVIEWCKKHKDDDPANPEDKELPEETDIPEW 88 (162)
T ss_pred CCceeehhHHHH-HHhHHHHHHHHHcCCCccC-CccccCccC--HHHHHHHHHHHHHcccccccccccccccccCCccHH
Confidence 688888887754 688888888873 22222 468999999 8999999999997321
Q ss_pred -----cCChhhHHHHHHHHHHccCch
Q 007944 92 -----EITVHNVAALRCAAEFLQMTD 112 (584)
Q Consensus 92 -----~it~~NV~~Ll~AA~~Lqm~e 112 (584)
.+...++.+|.-||.||+++.
T Consensus 89 D~~Flk~d~~tLfdli~AAnyLdi~g 114 (162)
T KOG1724|consen 89 DAEFLKVDQGTLFDLILAANYLDIKG 114 (162)
T ss_pred HHHHHhcCHHHHHHHHHHhhhcccHH
Confidence 133457889999999999999
No 27
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=91.36 E-value=0.69 Score=50.49 Aligned_cols=82 Identities=15% Similarity=0.154 Sum_probs=62.9
Q ss_pred EEEEECCeEEEeeHHHhhccC--HHHHHhhc-cCcc-CCcceEEeCCCCCCHHHHHHHHHHhhcccccCChhhHHHHHH-
Q 007944 29 IVVAVGEANFPLHKFMLVAKS--NYIRKLII-ESKE-ADLTRINLSNIPGGPEMFEKAAKFCYGVNFEITVHNVAALRC- 103 (584)
Q Consensus 29 V~I~V~g~~F~~HK~vLaa~S--~yFr~mf~-~~~E-s~~~~I~L~di~gg~~aFe~vl~F~Ytg~i~it~~NV~~Ll~- 103 (584)
|.+.|||+.|.--+.-|+... .+|.+|++ .+.- .......+-|-+ |+.|..+|+|+-|+++.+..--...++.
T Consensus 13 V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFIDRD--PdlFaviLn~LRTg~L~~~g~~~~~llhd 90 (465)
T KOG2714|consen 13 VKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFIDRD--PDLFAVILNLLRTGDLDASGVFPERLLHD 90 (465)
T ss_pred EEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEecCC--chHHHHHHHHHhcCCCCCccCchhhhhhh
Confidence 568999999999999888766 69999997 3331 122223344556 8999999999999999996555555555
Q ss_pred HHHHccCch
Q 007944 104 AAEFLQMTD 112 (584)
Q Consensus 104 AA~~Lqm~e 112 (584)
=|.||+++.
T Consensus 91 EA~fYGl~~ 99 (465)
T KOG2714|consen 91 EAMFYGLTP 99 (465)
T ss_pred hhhhcCcHH
Confidence 899999999
No 28
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=89.44 E-value=1.1 Score=45.18 Aligned_cols=88 Identities=17% Similarity=0.237 Sum_probs=69.2
Q ss_pred EEEEECCeEEEeeHHHhhccCH--HHHHhhc--c--CccCCcceEEeCCCCCCHHHHHHHHHHhhccccc-CChhhHHHH
Q 007944 29 IVVAVGEANFPLHKFMLVAKSN--YIRKLII--E--SKEADLTRINLSNIPGGPEMFEKAAKFCYGVNFE-ITVHNVAAL 101 (584)
Q Consensus 29 V~I~V~g~~F~~HK~vLaa~S~--yFr~mf~--~--~~Es~~~~I~L~di~gg~~aFe~vl~F~Ytg~i~-it~~NV~~L 101 (584)
|.+.+||+.|.--.--|.-+-| -+.+||. + .+++.+. -.+-|-+ |.-|+-++.|+-.|.+. .+.-++..+
T Consensus 11 vrlnigGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kG-a~lIDRs--p~yFepIlNyLr~Gq~~~~s~i~~lgv 87 (302)
T KOG1665|consen 11 VRLNIGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKG-AVLIDRS--PKYFEPILNYLRDGQIPSLSDIDCLGV 87 (302)
T ss_pred heeecCCeEEEEeehhhcccCchHHHHHHHccCCCccccccCc-eEEEccC--chhhHHHHHHHhcCceeecCCccHHHH
Confidence 6788999999988888877754 6789998 2 2233443 3444555 79999999999999875 556789999
Q ss_pred HHHHHHccCchhhhhHhHHHHHHH
Q 007944 102 RCAAEFLQMTDKYCENNLAGRTED 125 (584)
Q Consensus 102 l~AA~~Lqm~e~~c~~nL~~~~e~ 125 (584)
+..|.|||+-. |+.++|.
T Consensus 88 LeeArff~i~s------L~~hle~ 105 (302)
T KOG1665|consen 88 LEEARFFQILS------LKDHLED 105 (302)
T ss_pred HHHhhHHhhHh------HHhHHhh
Confidence 99999999999 8988866
No 29
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=86.20 E-value=0.34 Score=50.23 Aligned_cols=87 Identities=20% Similarity=0.097 Sum_probs=65.0
Q ss_pred CeEEEeeHHHhhccCHHHHHhhc-cCccCCcceEEeCCCCCCHHHHHHHHHHhhcccccCChhhHH---HHHHHHHHccC
Q 007944 35 EANFPLHKFMLVAKSNYIRKLII-ESKEADLTRINLSNIPGGPEMFEKAAKFCYGVNFEITVHNVA---ALRCAAEFLQM 110 (584)
Q Consensus 35 g~~F~~HK~vLaa~S~yFr~mf~-~~~Es~~~~I~L~di~gg~~aFe~vl~F~Ytg~i~it~~NV~---~Ll~AA~~Lqm 110 (584)
+..+..|+.+++++++.|+.|+. +..+.....+.+.+.. ++.|+.+..|.|+..-..+..++. .++++|..++.
T Consensus 109 ~g~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~d~~--~~~~~~~~~F~~~~s~~~~~~~~~~~~~~~a~~f~~~~ 186 (297)
T KOG1987|consen 109 NGFLVAHKLVLVARSEVFEAMGKSDVFKESSKLITLLEEK--PEVLEALNGFQVLPSQVSSVERIFEKHPDLAAAFKYKN 186 (297)
T ss_pred CcEEEcCceEEEeeecceeeecccccchhccccccccccc--hhhHhhhceEEEeccchHHHHHhhcCChhhhhcccccc
Confidence 45599999999999999999998 4444444455777877 899999999999965444444454 77778887887
Q ss_pred chhhhhHhHHHHHHHHHHH
Q 007944 111 TDKYCENNLAGRTEDFLSQ 129 (584)
Q Consensus 111 ~e~~c~~nL~~~~e~~ln~ 129 (584)
.. |...|+..+..
T Consensus 187 ~~------lk~~~~~~l~~ 199 (297)
T KOG1987|consen 187 RH------LKLACMPVLLS 199 (297)
T ss_pred HH------HHHHHHHHHHH
Confidence 77 66666555443
No 30
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=74.52 E-value=13 Score=34.50 Aligned_cols=88 Identities=14% Similarity=0.228 Sum_probs=61.6
Q ss_pred EEE-EECCeEEEeeHHHhhccCHHHHHhhccCccCCcceEEeCCCCCCHHHHHHHHHHhhcccccC--------------
Q 007944 29 IVV-AVGEANFPLHKFMLVAKSNYIRKLIIESKEADLTRINLSNIPGGPEMFEKAAKFCYGVNFEI-------------- 93 (584)
Q Consensus 29 V~I-~V~g~~F~~HK~vLaa~S~yFr~mf~~~~Es~~~~I~L~di~gg~~aFe~vl~F~Ytg~i~i-------------- 93 (584)
|.+ ..+|..|.+.+. .|-+|-.++.|+..+.+..- .|.++++. ..+|..+++||--.+-.+
T Consensus 4 i~l~s~dge~F~vd~~-iAerSiLikN~l~d~~~~n~-p~p~pnVr--Ssvl~kv~ew~ehh~~s~sede~d~~~rks~p 79 (158)
T COG5201 4 IELESIDGEIFRVDEN-IAERSILIKNMLCDSTACNY-PIPAPNVR--SSVLMKVQEWMEHHTSSLSEDENDLEIRKSKP 79 (158)
T ss_pred eEEEecCCcEEEehHH-HHHHHHHHHHHhccccccCC-CCcccchh--HHHHHHHHHHHHhccccCCCccChHhhhccCC
Confidence 444 347888999887 57899999999886555443 35677888 899999999997533222
Q ss_pred -----------ChhhHHHHHHHHHHccCchhhhhHhHHHHHHHH
Q 007944 94 -----------TVHNVAALRCAAEFLQMTDKYCENNLAGRTEDF 126 (584)
Q Consensus 94 -----------t~~NV~~Ll~AA~~Lqm~e~~c~~nL~~~~e~~ 126 (584)
...-..++.-||.||+++. |...++..
T Consensus 80 ~D~wdr~Fm~vDqemL~eI~laaNYL~ikp------LLd~gCKi 117 (158)
T COG5201 80 SDFWDRFFMEVDQEMLLEICLAANYLEIKP------LLDLGCKI 117 (158)
T ss_pred ccHHHHHHHHhhHHHHHHHHHhhccccchH------HHHHHHHH
Confidence 1223566778888888888 65555333
No 31
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=64.57 E-value=21 Score=34.67 Aligned_cols=88 Identities=18% Similarity=0.166 Sum_probs=66.2
Q ss_pred cEEEEECCeEEEeeHHHhhccC-HHHHHhhccCc----cCCcceEEeCCCCCCHHHHHHHHHHhhcccccCChhhHHHHH
Q 007944 28 DIVVAVGEANFPLHKFMLVAKS-NYIRKLIIESK----EADLTRINLSNIPGGPEMFEKAAKFCYGVNFEITVHNVAALR 102 (584)
Q Consensus 28 DV~I~V~g~~F~~HK~vLaa~S-~yFr~mf~~~~----Es~~~~I~L~di~gg~~aFe~vl~F~Ytg~i~it~~NV~~Ll 102 (584)
=|.+.|||..|.--|.-|.--+ .|+.++...-. +.+..--.|-|-+ |.-|--+++|+-.|++-++.-.-..++
T Consensus 22 wVRlNVGGt~f~TtktTl~rdp~sFl~rl~q~~~~l~sdrDetGAYlIDRD--P~~FgpvLNylRhgklvl~~l~eeGvL 99 (210)
T KOG2715|consen 22 WVRLNVGGTVFLTTKTTLPRDPKSFLYRLCQREKDLPSDRDETGAYLIDRD--PFYFGPVLNYLRHGKLVLNKLSEEGVL 99 (210)
T ss_pred EEEEecCCEEEEeeeeccccCcHHHHHHHHhcccCCCCCccccCceEeccC--cchHHHHHHHHhcchhhhhhhhhhccc
Confidence 3677899999999999998888 45556655221 2222334455666 899999999999999999885556788
Q ss_pred HHHHHccCchhhhhHhHHHHH
Q 007944 103 CAAEFLQMTDKYCENNLAGRT 123 (584)
Q Consensus 103 ~AA~~Lqm~e~~c~~nL~~~~ 123 (584)
.-|+|+.++. |+...
T Consensus 100 ~EAefyn~~~------li~li 114 (210)
T KOG2715|consen 100 EEAEFYNDPS------LIQLI 114 (210)
T ss_pred hhhhccCChH------HHHHH
Confidence 8999999998 66555
No 32
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=60.92 E-value=7 Score=25.57 Aligned_cols=17 Identities=29% Similarity=0.516 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHhhhcC
Q 007944 504 ELTRMKLYISDVQKGNN 520 (584)
Q Consensus 504 e~~~m~~r~~ele~~~~ 520 (584)
||++.|.|+++||++..
T Consensus 2 E~~rlr~rI~dLer~L~ 18 (23)
T PF04508_consen 2 EMNRLRNRISDLERQLS 18 (23)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 78999999999998853
No 33
>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=58.99 E-value=35 Score=36.18 Aligned_cols=106 Identities=12% Similarity=0.209 Sum_probs=75.0
Q ss_pred hhcCCCccEEEEECCeEEEeeHHHhhccCH-HHHHhhc-cCc---cCCcceEEe-CCCCCCHHHHHHHHHHhhcccccCC
Q 007944 21 FSQEIPTDIVVAVGEANFPLHKFMLVAKSN-YIRKLII-ESK---EADLTRINL-SNIPGGPEMFEKAAKFCYGVNFEIT 94 (584)
Q Consensus 21 ~~~~~~sDV~I~V~g~~F~~HK~vLaa~S~-yFr~mf~-~~~---Es~~~~I~L-~di~gg~~aFe~vl~F~Ytg~i~it 94 (584)
+..|..--++..|++..|.+-+++|.++=. -+-.||. +.. .....+.++ .++. ...|.++|+|--+|.|...
T Consensus 90 ~~pg~~~~~t~lvd~~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNErgEyeVAdGi~--s~vFRAILdYYksG~iRCP 167 (438)
T KOG3840|consen 90 CSPGEGDKVCLLVDQTRFLVSQRLLTSKPDTMLGRMFSMGADLVSPNERDEFEVADGMT--SSCFRAILDYYQSGTMRCP 167 (438)
T ss_pred CCCCCCcceEEEeeeEEEEeeeeeecCCcchhhhhhhcccccccCCCcCCceehhcchh--HHHHHHHHHHHhcCceeCC
Confidence 444556668899999999999999977643 3345665 221 122334444 4666 8999999999999988754
Q ss_pred h-hhHHHHHHHHHHccCch---hhhhHhHHHHHHHHHH
Q 007944 95 V-HNVAALRCAAEFLQMTD---KYCENNLAGRTEDFLS 128 (584)
Q Consensus 95 ~-~NV~~Ll~AA~~Lqm~e---~~c~~nL~~~~e~~ln 128 (584)
+ -.|-+|..|.+||-++- ..-|.||...+-...|
T Consensus 168 ~~vSvpELrEACDYLlipF~a~TvkCqnL~aLlHELSN 205 (438)
T KOG3840|consen 168 SSVSVSELREACDYLLVPFNAQTVKCQNLHALLHELSN 205 (438)
T ss_pred CCCchHHHHhhcceEEeecccceeeehhHHHHHHHhcc
Confidence 3 46889999999999998 3457777776633333
No 34
>PF14363 AAA_assoc: Domain associated at C-terminal with AAA
Probab=52.79 E-value=7.4 Score=34.15 Aligned_cols=42 Identities=24% Similarity=0.335 Sum_probs=32.9
Q ss_pred cCCCCcccchhhHHHHHHHHHhCCCCCHHHHHhhhccccCCCC
Q 007944 396 VPKGSRKVDDDLYRAIDIYLKAHPNLDEIEREKICSSMDPLKL 438 (584)
Q Consensus 396 lP~~aR~~~DglYrAiDiyLk~Hp~l~~~Er~~lC~~~dc~KL 438 (584)
+|++..-....+|+|+..||.+....+. .|-++++.-|.+.+
T Consensus 30 I~E~~g~~~N~ly~a~~~YL~s~~s~~a-~rL~~~~~~~~~~~ 71 (98)
T PF14363_consen 30 IPEFDGLSRNELYDAAQAYLSSKISPSA-RRLKASKSKNSKNL 71 (98)
T ss_pred EEeCCCccccHHHHHHHHHHhhccCccc-ceeeecccCCCCce
Confidence 4444456788999999999999988776 88888887776653
No 35
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=47.59 E-value=23 Score=29.68 Aligned_cols=30 Identities=17% Similarity=0.314 Sum_probs=21.5
Q ss_pred cCChhhHHHHHHHHHHccCchhhhhHhHHHHHHHHH
Q 007944 92 EITVHNVAALRCAAEFLQMTDKYCENNLAGRTEDFL 127 (584)
Q Consensus 92 ~it~~NV~~Ll~AA~~Lqm~e~~c~~nL~~~~e~~l 127 (584)
.++...+..|+.||.||++.. |...|..++
T Consensus 10 ~~~~~~L~~l~~AA~yL~I~~------L~~~~~~~i 39 (78)
T PF01466_consen 10 DVDNDELFDLLNAANYLDIKG------LLDLCCKYI 39 (78)
T ss_dssp -S-HHHHHHHHHHHHHHT-HH------HHHHHHHHH
T ss_pred HcCHHHHHHHHHHHHHHcchH------HHHHHHHHH
Confidence 346678999999999999999 666664444
No 36
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=47.43 E-value=10 Score=41.55 Aligned_cols=112 Identities=22% Similarity=0.287 Sum_probs=65.4
Q ss_pred CChhhHHHHHHHHHHccCch--hhhhHhHHHHHHHHHHHHHhhhhhhhHHhhcCHHHHHH----HhHHhHHHHHHHHhhh
Q 007944 93 ITVHNVAALRCAAEFLQMTD--KYCENNLAGRTEDFLSQVALSSLSGAVVVLKSCEALLP----LAEDLLIVQRCIDVAT 166 (584)
Q Consensus 93 it~~NV~~Ll~AA~~Lqm~e--~~c~~nL~~~~e~~ln~~~~~~~adsi~vL~sc~~L~~----~Ae~~~I~~rc~d~ia 166 (584)
+..+||..++-||.++++++ ++|+.|.-..+.+.|..-.+.++.. .+..+++. .|-+.+| |..+
T Consensus 145 L~~~NvCmifdaA~ly~l~~Lt~~C~mfmDrnA~~lL~~~sFn~LSk-----~sL~e~l~RDsFfApE~~I---FlAv-- 214 (620)
T KOG4350|consen 145 LKNENVCMIFDAAYLYQLTDLTDYCMMFMDRNADQLLEDPSFNRLSK-----DSLKELLARDSFFAPELKI---FLAV-- 214 (620)
T ss_pred HcccceeeeeeHHHHhcchHHHHHHHHHHhcCHHhhhcCcchhhhhH-----HHHHHHHhhhcccchHHHH---HHHH--
Confidence 56689999999999999999 7888877777766665544444433 12222221 1111111 2222
Q ss_pred hhhhhccCCCCCCCCCCcccccccCCHHHHHHHHHHHhhCCC-ChHHHHHHHH
Q 007944 167 AKACYEANFPCRTPPNWWTEELSIIDIEFFSRIIAAMKKRGA-KALTIASALI 218 (584)
Q Consensus 167 ~ka~~~~~~~~~~~~dWW~EDl~~L~~d~~~rvI~a~~~~~~-~ee~v~~al~ 218 (584)
.++|.... +.... -.-++..||+-.+..++...+..|+ +|+.|.+|+.
T Consensus 215 ~~W~~~Ns--ke~~k--~~~~~VRLPLm~lteLLnvVRPsGllspD~iLDAI~ 263 (620)
T KOG4350|consen 215 RSWHQNNS--KEASK--VLLELVRLPLMTLTELLNVVRPSGLLSPDTILDAIE 263 (620)
T ss_pred HHHHhcCc--hhhHH--HHHHHHhhhhccHHHHHhccCcccCcCHHHHHHHHH
Confidence 22332210 00000 0123456777778888888888885 9999988873
No 37
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=35.72 E-value=40 Score=35.95 Aligned_cols=31 Identities=19% Similarity=0.314 Sum_probs=26.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 007944 489 QADVLLIKENEALRSELTRMKLYISDVQKGN 519 (584)
Q Consensus 489 ~~~~~~~~e~~~lk~e~~~m~~r~~ele~~~ 519 (584)
++-..++.||..||.|.+.+|.+|..||.+.
T Consensus 32 ~e~~aLr~EN~~LKkEN~~Lk~eVerLE~e~ 62 (420)
T PF07407_consen 32 DENFALRMENHSLKKENNDLKIEVERLENEM 62 (420)
T ss_pred hhhhhHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 4456788999999999999999999998775
No 38
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=33.86 E-value=23 Score=35.39 Aligned_cols=36 Identities=25% Similarity=0.388 Sum_probs=27.6
Q ss_pred HhhhcC--CCCcccchhhHHHHHHHHHhCCCCCHHHHH
Q 007944 392 IANLVP--KGSRKVDDDLYRAIDIYLKAHPNLDEIERE 427 (584)
Q Consensus 392 lae~lP--~~aR~~~DglYrAiDiyLk~Hp~l~~~Er~ 427 (584)
+.+-+| +..+..-+|=|+||.-|||.||+==|.++.
T Consensus 182 ~v~dlp~~~~p~~~g~gP~~AVe~ylr~~p~~yEiD~~ 219 (237)
T COG3510 182 NVNDLPGPVLPWRFGGGPYEAVEAYLREFPQDYEIDTS 219 (237)
T ss_pred cccCCCCcccchhcCCChHHHHHHHHHhCCcccccchh
Confidence 345566 566667999999999999999976665554
No 39
>PF10929 DUF2811: Protein of unknown function (DUF2811); InterPro: IPR021231 This is a bacterial family of uncharacterised proteins.
Probab=30.46 E-value=37 Score=27.16 Aligned_cols=19 Identities=37% Similarity=0.791 Sum_probs=16.4
Q ss_pred hhhHHHHHHHHHhCCCCCH
Q 007944 405 DDLYRAIDIYLKAHPNLDE 423 (584)
Q Consensus 405 DglYrAiDiyLk~Hp~l~~ 423 (584)
-.||.|+.-||+.||+-+.
T Consensus 8 e~L~~~m~~fie~hP~WDQ 26 (57)
T PF10929_consen 8 EDLHQAMKDFIETHPNWDQ 26 (57)
T ss_pred HHHHHHHHHHHHcCCCchH
Confidence 4699999999999998754
No 40
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=28.99 E-value=73 Score=24.18 Aligned_cols=23 Identities=39% Similarity=0.398 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHH
Q 007944 490 ADVLLIKENEALRSELTRMKLYI 512 (584)
Q Consensus 490 ~~~~~~~e~~~lk~e~~~m~~r~ 512 (584)
++.++.+||+.|+.++..++.++
T Consensus 20 ~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 20 EYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
No 41
>KOG2723 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=27.99 E-value=1.3e+02 Score=30.53 Aligned_cols=81 Identities=15% Similarity=0.153 Sum_probs=53.3
Q ss_pred EEEEECCeEEEeeHHHh-hccCHHHHHhhccCc---cCCcceEEeCCCCCCHHHHHHHHHHhhcccccCCh--hhHHHHH
Q 007944 29 IVVAVGEANFPLHKFML-VAKSNYIRKLIIESK---EADLTRINLSNIPGGPEMFEKAAKFCYGVNFEITV--HNVAALR 102 (584)
Q Consensus 29 V~I~V~g~~F~~HK~vL-aa~S~yFr~mf~~~~---Es~~~~I~L~di~gg~~aFe~vl~F~Ytg~i~it~--~NV~~Ll 102 (584)
|.+.|||.-|..-..-| .-.-..+.+||++.. ........| |-+ -..|+-+++|+=+....+.. .++..|.
T Consensus 11 v~lnvGG~~ytt~l~tL~~~~ds~L~~~f~~~~~~~~d~~g~~fI-DRD--G~lFRyvL~~LRt~~l~lpe~f~e~~~L~ 87 (221)
T KOG2723|consen 11 VELNVGGAIYTTRLGTLTKFPDSMLARMFSGELPLLRDSKGRYFI-DRD--GFLFRYVLDYLRTKALLLPEDFAEVERLV 87 (221)
T ss_pred eeeccCCeEEEeeccceeechHHHHHhhcCCCCCccccccccEEE-cCC--cchHHHHHHHhcccccccchhhhhHHHHH
Confidence 55788888776433322 223346677777311 111222222 333 47899999999996666666 6889999
Q ss_pred HHHHHccCch
Q 007944 103 CAAEFLQMTD 112 (584)
Q Consensus 103 ~AA~~Lqm~e 112 (584)
.-|+|++++.
T Consensus 88 rEA~f~~l~~ 97 (221)
T KOG2723|consen 88 REAEFFQLEA 97 (221)
T ss_pred HHHHHHcccc
Confidence 9999999997
No 42
>PRK14127 cell division protein GpsB; Provisional
Probab=27.03 E-value=91 Score=28.23 Aligned_cols=32 Identities=25% Similarity=0.249 Sum_probs=27.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 007944 490 ADVLLIKENEALRSELTRMKLYISDVQKGNNQ 521 (584)
Q Consensus 490 ~~~~~~~e~~~lk~e~~~m~~r~~ele~~~~~ 521 (584)
.|..+.+||..|+.++.+++.++.+++.....
T Consensus 38 dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~ 69 (109)
T PRK14127 38 DYEAFQKEIEELQQENARLKAQVDELTKQVSV 69 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 46678899999999999999999999987643
No 43
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=26.69 E-value=48 Score=29.87 Aligned_cols=29 Identities=28% Similarity=0.352 Sum_probs=25.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHH--Hhhhc
Q 007944 491 DVLLIKENEALRSELTRMKLYISD--VQKGN 519 (584)
Q Consensus 491 ~~~~~~e~~~lk~e~~~m~~r~~e--le~~~ 519 (584)
..++..||-.|++|-+++|.|+.+ +|+.-
T Consensus 31 l~~lvEEN~~L~lENe~LR~RL~~~~~e~~~ 61 (114)
T COG4467 31 LGSLVEENTALRLENEKLRERLGEPTLEKTA 61 (114)
T ss_pred HHHHHHhhHHHHhhHHHHHHHhCCccccchh
Confidence 467899999999999999999999 77664
No 44
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=26.41 E-value=53 Score=26.40 Aligned_cols=27 Identities=19% Similarity=0.302 Sum_probs=23.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 007944 493 LLIKENEALRSELTRMKLYISDVQKGN 519 (584)
Q Consensus 493 ~~~~e~~~lk~e~~~m~~r~~ele~~~ 519 (584)
.++.|.+.||..+..+..|+.+||.|+
T Consensus 11 AVrEEVevLK~~I~eL~~~n~~Le~EN 37 (59)
T PF01166_consen 11 AVREEVEVLKEQIAELEERNSQLEEEN 37 (59)
T ss_dssp T-TTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457789999999999999999999996
No 45
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=25.62 E-value=88 Score=28.14 Aligned_cols=28 Identities=21% Similarity=0.303 Sum_probs=25.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 007944 491 DVLLIKENEALRSELTRMKLYISDVQKG 518 (584)
Q Consensus 491 ~~~~~~e~~~lk~e~~~m~~r~~ele~~ 518 (584)
+..+..||..|+.|-+.+|.|+.+++++
T Consensus 31 ~~~l~EEN~~L~~EN~~Lr~~l~~~~~~ 58 (107)
T PF06156_consen 31 LQELLEENARLRIENEHLRERLEELEQE 58 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5678999999999999999999999884
No 46
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=25.56 E-value=1e+02 Score=24.50 Aligned_cols=26 Identities=19% Similarity=0.279 Sum_probs=20.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHh
Q 007944 491 DVLLIKENEALRSELTRMKLYISDVQ 516 (584)
Q Consensus 491 ~~~~~~e~~~lk~e~~~m~~r~~ele 516 (584)
..++++||++++.++++|...|.+|=
T Consensus 16 i~tvk~en~~i~~~ve~i~envk~ll 41 (55)
T PF05377_consen 16 INTVKKENEEISESVEKIEENVKDLL 41 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678899999999998888886653
No 47
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=25.33 E-value=54 Score=39.42 Aligned_cols=75 Identities=24% Similarity=0.443 Sum_probs=50.7
Q ss_pred hccccCCCCCccccHHHHHHHHHHHHhccccccccCCCCCccccCCCchhhhHHHhhhhhhhhhhcCCCCCChhHHHHHh
Q 007944 314 LVLSFTYDGERLFDLESVRKIISGFVEKEKSMAVFSGSGDFRESCSCSPAMHRVAKTVGTYLGEIATSGELSISKFNGIA 393 (584)
Q Consensus 314 Lips~~~~~~~~ydvd~v~ri~~~Fl~~~~~~~~~~~~~~~~~~~~~~~~~~~Vakl~D~yLaEiA~D~~L~~~kF~~la 393 (584)
+||...|+ +.+.+.-++++|-..-+ +|.|=.+..+|..+.+..|..++
T Consensus 252 iLP~Lt~G-----~~e~m~~Lv~~F~p~l~---------------------------f~~~D~~~~~~~~~~Le~F~~i~ 299 (802)
T PF13764_consen 252 ILPFLTYG-----NEEKMDALVEHFKPYLD---------------------------FDKFDEEHSPDEQFKLECFCEIA 299 (802)
T ss_pred HhhHHhcC-----CHHHHHHHHHHHHHhcC---------------------------hhhcccccCchHHHHHHHHHHHH
Confidence 35766544 58889999999952110 33444455677788899999999
Q ss_pred hhcCCCC--cc-----cchhhHH-HHHHHHHhC-CCC
Q 007944 394 NLVPKGS--RK-----VDDDLYR-AIDIYLKAH-PNL 421 (584)
Q Consensus 394 e~lP~~a--R~-----~~DglYr-AiDiyLk~H-p~l 421 (584)
+.+|.++ .. .+=|++. |++ ||..| |..
T Consensus 300 ~~I~~~~~G~~LK~~Il~~GIv~~a~~-YL~~~~P~~ 335 (802)
T PF13764_consen 300 EGIPNNSNGNRLKDKILESGIVQDAID-YLLKHFPSL 335 (802)
T ss_pred hcCCCCCchHHHHHHHHHhhHHHHHHH-HHHHhCccc
Confidence 9999877 22 3445666 888 66655 665
No 48
>PHA03098 kelch-like protein; Provisional
Probab=24.17 E-value=2.6e+02 Score=31.43 Aligned_cols=30 Identities=13% Similarity=0.128 Sum_probs=23.8
Q ss_pred cCChhhHHHHHHHHHHccCchhhhhHhHHHHHHHHH
Q 007944 92 EITVHNVAALRCAAEFLQMTDKYCENNLAGRTEDFL 127 (584)
Q Consensus 92 ~it~~NV~~Ll~AA~~Lqm~e~~c~~nL~~~~e~~l 127 (584)
.|+.+|+..++..|+.+.... |.+.|..|+
T Consensus 104 ~l~~~nc~~~~~~a~~~~~~~------L~~~~~~~i 133 (534)
T PHA03098 104 IIDDNNCIDIYRFSFFYGCKK------LYSAAYNYI 133 (534)
T ss_pred hCCHhHHHHHHHHHHHcCcHH------HHHHHHHHH
Confidence 478999999999999999888 555554444
No 49
>PF09593 Pathogen_betaC1: Beta-satellite pathogenicity beta C1 protein; InterPro: IPR018583 Cotton leaf-curl disease - CLCuD - is of major economic importance in cotton-growing areas of the far-east. The infectious agent appears to be a single-stranded DNA molecule of approx 1350 nucleotides in length, which, when inoculated with the Begomovirus into cotton, induces symptoms typical of CLCuD. This molecule requires the Begomovirus for replication and encapsidation []. DNA beta encodes a single protein, betaC1. The intracellular distribution of betaC1 is consistent with the hypothesis that it has a role in transporting the DNA A of Begomovirus from the nuclear site of replication to the plasmodesmatal exit sites of the infected cell. The DNA beta-encoded protein, betaC1, is the determinant of both pathogenicity and suppression of gene silencing [].
Probab=23.76 E-value=89 Score=28.65 Aligned_cols=77 Identities=16% Similarity=0.106 Sum_probs=48.9
Q ss_pred CCeEEEeeHHHhhccCHHHHHhhccCccCCcceEEe-CCCCCCHHHHHHHHHHhhcccccCChhhHHHHHHHHHHccCch
Q 007944 34 GEANFPLHKFMLVAKSNYIRKLIIESKEADLTRINL-SNIPGGPEMFEKAAKFCYGVNFEITVHNVAALRCAAEFLQMTD 112 (584)
Q Consensus 34 ~g~~F~~HK~vLaa~S~yFr~mf~~~~Es~~~~I~L-~di~gg~~aFe~vl~F~Ytg~i~it~~NV~~Ll~AA~~Lqm~e 112 (584)
++..|.+|--+++.+||.+.+-=.-..=... .+.. -|+.|-.++....++++|.+. .+..--..++..+-+.|=|.+
T Consensus 20 ~~~~i~V~i~l~ST~sP~l~k~~f~IpY~~~-~ii~PFDFNglEe~I~~~l~~mY~~s-~~~efk~EDmve~IDIlmme~ 97 (117)
T PF09593_consen 20 EDMSIFVHIQLFSTRSPALIKKKFIIPYTHE-GIIPPFDFNGLEEGIKNTLKIMYKDS-KIEEFKQEDMVEAIDILMMEE 97 (117)
T ss_pred CCCEEEEEEEEEECCChHHheEEEEEeccCC-CeECCcccCcHHHHHHHHHHHHhCCC-CcccccHHHHHhhhheeeecC
Confidence 4789999999999999988642111111122 2333 378887899999999999874 233333344555555554444
No 50
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=23.76 E-value=2.9e+02 Score=31.28 Aligned_cols=83 Identities=13% Similarity=0.174 Sum_probs=50.6
Q ss_pred CccEEEEECCeEEEeeHHHhhccC-HHHHHhhc-cCc----------cCCcceEEeCCCCCCHHHHHHHHHHhhcccccC
Q 007944 26 PTDIVVAVGEANFPLHKFMLVAKS-NYIRKLII-ESK----------EADLTRINLSNIPGGPEMFEKAAKFCYGVNFEI 93 (584)
Q Consensus 26 ~sDV~I~V~g~~F~~HK~vLaa~S-~yFr~mf~-~~~----------Es~~~~I~L~di~gg~~aFe~vl~F~Ytg~i~i 93 (584)
..-|+|.|||..+.+-+..|...= ..+.++.. ... +...++.-+ |-+ |.+|..+++|-+||++..
T Consensus 30 ~~~i~lNVGG~r~~l~~~tL~~~P~TRL~rL~~~~~~~~~l~~cDdyd~~~~EyfF-DR~--P~~F~~Vl~fYrtGkLH~ 106 (477)
T KOG3713|consen 30 DRRVRLNVGGTRHELYWSTLKRFPLTRLGRLADCNSHEERLELCDDYDPVTNEYFF-DRH--PGAFAYVLNFYRTGKLHV 106 (477)
T ss_pred CcEEEEeeCCeeEEehHHHHhhCchhHHHHHHhcccchhhhhhccccCcccCeeee-ccC--hHHHHHHHHHHhcCeecc
Confidence 345888999999998888776511 12222222 100 112223322 334 799999999999999986
Q ss_pred ChhhHHHH--HHHHHHccCch
Q 007944 94 TVHNVAAL--RCAAEFLQMTD 112 (584)
Q Consensus 94 t~~NV~~L--l~AA~~Lqm~e 112 (584)
.. ++..+ ..=-+|.++++
T Consensus 107 p~-~vC~~~F~eEL~yWgI~~ 126 (477)
T KOG3713|consen 107 PA-DVCPLSFEEELDYWGIDE 126 (477)
T ss_pred cc-ccchHHHHHHHHHhCCCh
Confidence 44 33332 23346788888
No 51
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=23.75 E-value=96 Score=29.31 Aligned_cols=31 Identities=26% Similarity=0.245 Sum_probs=27.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 007944 491 DVLLIKENEALRSELTRMKLYISDVQKGNNQ 521 (584)
Q Consensus 491 ~~~~~~e~~~lk~e~~~m~~r~~ele~~~~~ 521 (584)
..+++.|++.|-.+++.|+.||.+||.-+..
T Consensus 75 L~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~ 105 (140)
T PF10473_consen 75 LDTLRSEKENLDKELQKKQEKVSELESLNSS 105 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 5788999999999999999999999987643
No 52
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=20.24 E-value=1.6e+02 Score=28.79 Aligned_cols=28 Identities=11% Similarity=0.156 Sum_probs=24.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 007944 492 VLLIKENEALRSELTRMKLYISDVQKGN 519 (584)
Q Consensus 492 ~~~~~e~~~lk~e~~~m~~r~~ele~~~ 519 (584)
.--+||++++...|.++-.|+..+|...
T Consensus 121 l~hr~e~ee~~~~l~~le~~~~~~e~~~ 148 (175)
T PRK13182 121 LQHRREMEEMLERLQKLEARLKKLEPIY 148 (175)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3458999999999999999999988654
Done!