BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007945
(584 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EJQ|A Chain A, Conserved Hypothetical Protein (Ttha0227) From Thermo
Thermophilus Hb8
pdb|2EJQ|B Chain B, Conserved Hypothetical Protein (Ttha0227) From Thermo
Thermophilus Hb8
Length = 130
Score = 34.7 bits (78), Expect = 0.14, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 15/90 (16%)
Query: 345 ELLERYWDLMPEYQGVTLDNLEIQRVIYGI--FPTYRDSPLPAAFNRILQFGDASGIQSP 402
EL+ER W+ +PE + +R + G+ FP + P R+ ++ D P
Sbjct: 8 ELVERLWEEVPE---------DFKRGLQGVHVFPEAKPEPGLEGVWRLGEYLDPG---PP 55
Query: 403 VSFGGFGSLTRHLGRLSTGVYEAVRGDFVD 432
+FGGF L RH+ L G + V G+ D
Sbjct: 56 SAFGGFEDLGRHIA-LYYGSFLEVAGEGFD 84
>pdb|4IWH|A Chain A, Crystal Structure Of A 3-isopropylmalate Dehydrogenase
From Burkholderia Pseudomallei
pdb|4IWH|B Chain B, Crystal Structure Of A 3-isopropylmalate Dehydrogenase
From Burkholderia Pseudomallei
Length = 363
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 10/116 (8%)
Query: 352 DLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRIL---QFGDASGIQSPVSFGGF 408
D+ EY V L ++ + + + P F+ I+ FGD ++ + G
Sbjct: 214 DVSKEYADVELSHMYVDNAAMQL------AKAPKQFDVIVTGNMFGDILSDEASMLTGSI 267
Query: 409 GSL-TRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLSASWLFQRAMSAKQQSD 463
G L + L + + G+YE G D + NP LSA+ L + +++ +Q+D
Sbjct: 268 GMLPSASLDKNNKGLYEPSHGSAPDIAGKGIANPLATILSAAMLLRYSLNRAEQAD 323
>pdb|1ZJY|A Chain A, Structure Of R-Specific Alcohol Dehydrogenase (Mutant
G37d) From Lactobacillus Brevis In Complex With
Phenylethanol And Nadh
pdb|1ZJZ|A Chain A, Structure Of R-Specific Alcohol Dehydrogenase (Mutant
G37d) From Lactobacillus Brevis In Complex With
Phenylethanol And Nad
pdb|1ZK0|A Chain A, Structure Of R-Specific Alcohol Dehydrogenase (Mutant
G37d) From Lactobacillus Brevis In Complex With
Phenylethanol And Nadh
pdb|1ZK1|A Chain A, Structure Of R-Specific Alcohol Dehydrogenase (Mutant
G37d) From Lactobacillus Brevis In Complex With
Phenylethanol And Nad
pdb|1ZK2|A Chain A, Orthorhombic Crystal Structure Of The Apo-Form Of
R-Specific Alcohol Dehydrogenase (Mutant G37d) From
Lactobacillus Brevis
pdb|1ZK3|A Chain A, Triclinic Crystal Structure Of The Apo-Form Of R-Specific
Alcohol Dehydrogenase (Mutant G37d) From Lactobacillus
Brevis
pdb|1ZK3|B Chain B, Triclinic Crystal Structure Of The Apo-Form Of R-Specific
Alcohol Dehydrogenase (Mutant G37d) From Lactobacillus
Brevis
pdb|1ZK3|C Chain C, Triclinic Crystal Structure Of The Apo-Form Of R-Specific
Alcohol Dehydrogenase (Mutant G37d) From Lactobacillus
Brevis
pdb|1ZK3|D Chain D, Triclinic Crystal Structure Of The Apo-Form Of R-Specific
Alcohol Dehydrogenase (Mutant G37d) From Lactobacillus
Brevis
pdb|1ZK3|E Chain E, Triclinic Crystal Structure Of The Apo-Form Of R-Specific
Alcohol Dehydrogenase (Mutant G37d) From Lactobacillus
Brevis
pdb|1ZK3|F Chain F, Triclinic Crystal Structure Of The Apo-Form Of R-Specific
Alcohol Dehydrogenase (Mutant G37d) From Lactobacillus
Brevis
pdb|1ZK3|G Chain G, Triclinic Crystal Structure Of The Apo-Form Of R-Specific
Alcohol Dehydrogenase (Mutant G37d) From Lactobacillus
Brevis
pdb|1ZK3|H Chain H, Triclinic Crystal Structure Of The Apo-Form Of R-Specific
Alcohol Dehydrogenase (Mutant G37d) From Lactobacillus
Brevis
Length = 251
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 113 VIVCGGTLGIFIATALSF--KGLRVAIVERNTLKGREQEWNISRKELLELVESGILVED- 169
I+ GGTLGI +A A F +G +V I +R++ G + ++ + ++ + ED
Sbjct: 9 AIITGGTLGIGLAIATKFVEEGAKVMITDRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDG 68
Query: 170 --DIDEATATKFNP 181
+ +AT F P
Sbjct: 69 WTKLFDATEKAFGP 82
>pdb|3U1H|A Chain A, Crystal Structure Of Ipmdh From The Last Common Ancestor
Of Bacillus
pdb|3U1H|B Chain B, Crystal Structure Of Ipmdh From The Last Common Ancestor
Of Bacillus
Length = 390
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 61/140 (43%), Gaps = 17/140 (12%)
Query: 344 EELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRIL---QFGDASGIQ 400
EE+ + Y D+ E + + +DN +Q + R+ P F+ I+ FGD +
Sbjct: 226 EEVAKEYPDV--ELEHMLVDNAAMQLI--------RN---PRQFDVIVTENMFGDILSDE 272
Query: 401 SPVSFGGFGSL-TRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLSASWLFQRAMSAK 459
+ + G G L + L G+YE V G D + NP LSA+ + + + +
Sbjct: 273 ASMITGSLGMLPSASLSTDGLGLYEPVHGSAPDIAGKGIANPLATILSAAMMLRYSFGLE 332
Query: 460 QQSDVSPDFINELLYVNFQC 479
+++ + ++L ++
Sbjct: 333 EEAKAIEKAVEKVLAEGYRT 352
>pdb|1NXQ|A Chain A, Crystal Structure Of R-Alcohol Dehydrogenase (Radh)
(Apoenyzme) From Lactobacillus Brevis
pdb|1ZK4|A Chain A, Structure Of R-specific Alcohol Dehydrogenase (wildtype)
From Lactobacillus Brevis In Complex With Acetophenone
And Nadp
Length = 251
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Query: 113 VIVCGGTLGIFIATALSF--KGLRVAIVERNTLKGREQEWNISRKELLELVESGILVED- 169
I+ GGTLGI +A A F +G +V I R++ G + ++ + ++ + ED
Sbjct: 9 AIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDG 68
Query: 170 --DIDEATATKFNP 181
+ +AT F P
Sbjct: 69 WTKLFDATEKAFGP 82
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.140 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,053,309
Number of Sequences: 62578
Number of extensions: 715552
Number of successful extensions: 1443
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1441
Number of HSP's gapped (non-prelim): 13
length of query: 584
length of database: 14,973,337
effective HSP length: 104
effective length of query: 480
effective length of database: 8,465,225
effective search space: 4063308000
effective search space used: 4063308000
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)