BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007945
(584 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O65402|ERG12_ARATH Squalene monooxygenase 1,2 OS=Arabidopsis thaliana GN=SQP1,2 PE=2
SV=1
Length = 517
Score = 37.7 bits (86), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 73/336 (21%), Positives = 137/336 (40%), Gaps = 58/336 (17%)
Query: 105 DKAVGTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLE---- 159
D+ G DVI+ G G G +A AL+ G RV ++ER+ RE E + E ++
Sbjct: 40 DQKDGAADVIIVGAGVGGSALAYALAKDGRRVHVIERDM---REPERMMG--EFMQPGGR 94
Query: 160 LVESGILVED---DIDEATATKFNPNRCGFEGKGEIWVEDILNLGVSPA-------KLIE 209
L+ S + ++D DID AT + G E V++ N P+ + ++
Sbjct: 95 LMLSKLGLQDCLEDIDAQKATGLAVYKDGKEADAPFPVDNN-NFSYEPSARSFHNGRFVQ 153
Query: 210 IVKKRFISLGGVIFEGYSVSSI---------CTYENAAVLLLAEGKILSSHLIIDAMGNF 260
++++ SL V E +V S+ TY+N E + L + G +
Sbjct: 154 QLRRKAFSLSNVRLEEGTVKSLLEEKGVVKGVTYKNKE----GEETTALAPLTVVCDGCY 209
Query: 261 SPVVKQIRSGRKPDGVCLVVGSCARG--FKDNSTSDVIYSSSS---VKKVGDSEVQLFWE 315
S + + + + + +VG ++ ++ +I S S V ++ ++V+ +E
Sbjct: 210 SNLRRSLNDDNNAEIMSYIVGYISKNCRLEEPEKLHLILSKPSFTMVYQISSTDVRCGFE 269
Query: 316 AFPAGSGPL---DRTTYMFTYIDPQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIY 372
P + + +T+M I PQ PKL ++ + D +G +
Sbjct: 270 VLPENFPSIANGEMSTFMKNTIVPQV-PPKLRKIFLKGID-----EGAHIK--------- 314
Query: 373 GIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGF 408
+ P R + + ++ GDA ++ PV G
Sbjct: 315 -VVPAKRMTSTLSKKKGVIVLGDAFNMRHPVVASGM 349
>sp|Q6ZZF4|GPD1_CYBJA Glycerol-3-phosphate dehydrogenase [NAD(+)] 1 OS=Cyberlindnera
jadinii GN=gpd1 PE=3 SV=1
Length = 393
Score = 35.8 bits (81), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 96 GLFSQSDLSDKAVGTFDVIV-CGGTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISR 154
G +Q + ++ G D+I C G + +A A++ G VER L G+ + I+
Sbjct: 291 GETNQDTFTKESAGVADLITTCSGGRNVRVAKAMAITGKSAVEVERELLNGQSAQGIITS 350
Query: 155 KELLELVESGILVED 169
KE+ EL+ + L ++
Sbjct: 351 KEVHELLAAKNLTKE 365
>sp|Q3M8T9|LEU3_ANAVT 3-isopropylmalate dehydrogenase OS=Anabaena variabilis (strain ATCC
29413 / PCC 7937) GN=leuB PE=3 SV=1
Length = 362
Score = 35.8 bits (81), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 49/120 (40%), Gaps = 10/120 (8%)
Query: 348 ERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQ---FGDASGIQSPVS 404
+R L EY V L +L + + P F+ I+ FGD + +
Sbjct: 206 DRITKLSQEYPDVELSHLYVDNAAMQLVRA------PKQFDTIVTGNLFGDILSDAAAML 259
Query: 405 FGGFGSL-TRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLSASWLFQRAMSAKQQSD 463
G G L + LG GV+E V G D L NP LSA+ + + A++ Q +D
Sbjct: 260 TGSIGMLPSASLGASGPGVFEPVHGSAPDIAGLDKANPLAQVLSAAMMLRYALNQPQAAD 319
>sp|Q27UB0|PGXC_ASPNG Exopolygalacturonase C OS=Aspergillus niger GN=pgxC PE=2 SV=1
Length = 440
Score = 34.7 bits (78), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 32/74 (43%)
Query: 307 DSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAGSPKLEELLERYWDLMPEYQGVTLDNLE 366
DS Q +W+A PAGS +D ++ ++ QA W++ Q +T+ +
Sbjct: 136 DSYGQPWWDANPAGSSGIDNRPHLMSFKSSQATMKYFRSRKPIAWNVKLHGQDITVSHAI 195
Query: 367 IQRVIYGIFPTYRD 380
I G FP D
Sbjct: 196 IDATSTGSFPFNTD 209
>sp|A2QEW2|PGXC_ASPNC Probable exopolygalacturonase C OS=Aspergillus niger (strain CBS
513.88 / FGSC A1513) GN=pgxC PE=3 SV=2
Length = 440
Score = 34.7 bits (78), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 32/74 (43%)
Query: 307 DSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAGSPKLEELLERYWDLMPEYQGVTLDNLE 366
DS Q +W+A PAGS +D ++ ++ QA W++ Q +T+ +
Sbjct: 136 DSYGQPWWDANPAGSSGIDNRPHLMSFKSSQATMKYFRSRKPIAWNVKLHGQDITVSHAI 195
Query: 367 IQRVIYGIFPTYRD 380
I G FP D
Sbjct: 196 IDATSTGSFPFNTD 209
>sp|O13306|ERG1_CANGA Squalene monooxygenase OS=Candida glabrata (strain ATCC 2001 / CBS
138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=ERG1 PE=3
SV=2
Length = 489
Score = 34.3 bits (77), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 10/62 (16%)
Query: 104 SDKAVGTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVE 162
+D+ V T+D ++ G G +G +ATAL+ KG +V IVER EW+ + + EL++
Sbjct: 6 ADETV-TYDALIVGAGVIGPCVATALARKGKKVLIVER--------EWSQPDRIVGELMQ 56
Query: 163 SG 164
G
Sbjct: 57 PG 58
>sp|C4R8P2|GATB_PICPG Glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial
OS=Komagataella pastoris (strain GS115 / ATCC 20864)
GN=PET112 PE=3 SV=1
Length = 492
Score = 33.9 bits (76), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 224 EGYSVSSICTYENAAVLLLAEGKILS--SHLIIDAMGNFSPVVKQIRSGRKPDGVCLVVG 281
EG + I YE V + + ++L+ +I D + + +VK+++ G KP + ++G
Sbjct: 406 EGPIIDLITKYELGEVDVTNDSELLAQVDSIIDDVLDTYPAIVKELQEGNKPGSINYLLG 465
Query: 282 SCAR 285
C R
Sbjct: 466 QCMR 469
>sp|Q8YXA2|LEU3_NOSS1 3-isopropylmalate dehydrogenase OS=Nostoc sp. (strain PCC 7120 /
UTEX 2576) GN=leuB PE=3 SV=1
Length = 362
Score = 33.9 bits (76), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 48/120 (40%), Gaps = 10/120 (8%)
Query: 348 ERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQ---FGDASGIQSPVS 404
+R +L EY V L +L + + P F+ I+ FGD + +
Sbjct: 206 DRITNLSQEYPDVELSHLYVDNAAMQLVRA------PKQFDTIVTGNLFGDILSDAAAML 259
Query: 405 FGGFGSL-TRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLSASWLFQRAMSAKQQSD 463
G G L + LG GV+E V G D NP LSA+ + + A+ Q +D
Sbjct: 260 TGSIGMLPSASLGASGPGVFEPVHGSAPDIAGQDKANPLAQVLSAAMMLRYALDQPQAAD 319
>sp|Q8KA30|PMBA_BUCAP Protein PmbA homolog OS=Buchnera aphidicola subsp. Schizaphis
graminum (strain Sg) GN=pmbA PE=3 SV=1
Length = 447
Score = 33.9 bits (76), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 7/70 (10%)
Query: 240 LLLAEGKILSSHLIIDAMGNFSPVVKQIRSGRKPDGVCLVVGSCARGFKDNSTSDVIYSS 299
++ +EG S+H+ I N +++Q +S R + C++ KDNST +S
Sbjct: 152 IINSEGSFFSNHITIKVFANSLGMLEQYKSTRYSNYNCMIA-------KDNSTMQRDFSY 204
Query: 300 SSVKKVGDSE 309
S+ +K+ D E
Sbjct: 205 STSRKLDDLE 214
>sp|Q7WEU9|PYRE_BORBR Orotate phosphoribosyltransferase OS=Bordetella bronchiseptica
(strain ATCC BAA-588 / NCTC 13252 / RB50) GN=pyrE PE=3
SV=2
Length = 224
Score = 33.5 bits (75), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 23/122 (18%)
Query: 91 VSSNAGLFSQSDLSDKAVGTFDVIVCGGTLGIFIATALSFKGLRVAIVERNTLKGREQEW 150
V + AG ++Q+ L D V FD++ GI +ATA S VA+ + GR+ +
Sbjct: 49 VGALAGFYAQA-LVDSGV-AFDMLFGPAYKGIPLATATS-----VALAGHRAMAGRDVPF 101
Query: 151 NISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEI 210
+RKE + E G LV GK + ++D++ G S + +EI
Sbjct: 102 AFNRKEAKDHGEGGTLVG---------------APLTGK-VVIIDDVITAGTSVRESVEI 145
Query: 211 VK 212
++
Sbjct: 146 IR 147
>sp|Q7VSN4|PYRE_BORPE Orotate phosphoribosyltransferase OS=Bordetella pertussis (strain
Tohama I / ATCC BAA-589 / NCTC 13251) GN=pyrE PE=3 SV=1
Length = 224
Score = 33.5 bits (75), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 23/122 (18%)
Query: 91 VSSNAGLFSQSDLSDKAVGTFDVIVCGGTLGIFIATALSFKGLRVAIVERNTLKGREQEW 150
V + AG ++Q+ L D V FD++ GI +ATA S VA+ + GR+ +
Sbjct: 49 VGTLAGFYAQA-LIDSGV-AFDMLFGPAYKGIPLATATS-----VALAGHGAMAGRDVPF 101
Query: 151 NISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEI 210
+RKE + E G LV GK + ++D++ G S + +EI
Sbjct: 102 AFNRKEAKDHGEGGTLVG---------------APLTGK-VVIIDDVITAGTSVRESVEI 145
Query: 211 VK 212
++
Sbjct: 146 IR 147
>sp|P32476|ERG1_YEAST Squalene monooxygenase OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=ERG1 PE=1 SV=2
Length = 496
Score = 33.5 bits (75), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 9/56 (16%)
Query: 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESG 164
T+D IV G G +G +AT L+ KG +V IVER +W + + + EL++ G
Sbjct: 18 TYDAIVIGAGVIGPCVATGLARKGKKVLIVER--------DWAMPDRIVGELMQPG 65
>sp|Q54QA0|PMS1_DICDI Mismatch repair endonuclease pms1 OS=Dictyostelium discoideum
GN=pms1 PE=3 SV=1
Length = 1022
Score = 33.1 bits (74), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 50/116 (43%), Gaps = 18/116 (15%)
Query: 166 LVEDDIDEATATKFNPNRCGFEGKGEIWVEDILN-LGVSPAKLIEIVKKR---------- 214
L+E+ ID T + GE ++E I N GV P+ + + K
Sbjct: 29 LIENSIDAGATTV----EIRLKEYGEEFIEVIDNGSGVEPSNFVALTMKHCTSKLESFSD 84
Query: 215 FISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF---SPVVKQI 267
+S+ F G ++SS+C+ N + + ++ + L+ D G +PV +++
Sbjct: 85 LLSIETYGFRGEALSSLCSLSNCIITTRTKNQVTAQRLVFDKEGKIQTQTPVAREV 140
>sp|Q9EVH5|LEU3_BUCUE 3-isopropylmalate dehydrogenase OS=Buchnera aphidicola subsp.
Uroleucon erigeronensis GN=leuB PE=3 SV=1
Length = 364
Score = 33.1 bits (74), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 52/124 (41%), Gaps = 13/124 (10%)
Query: 344 EELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRIL---QFGDASGIQ 400
+E++E+ + Y V L +L I I I P+ F+ IL FGD +
Sbjct: 206 KEIVEK---ISKNYPDVHLSHLYIDNAIMQIIKD------PSQFDVILCSNLFGDIVSDE 256
Query: 401 SPVSFGGFGSL-TRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLSASWLFQRAMSAK 459
G G L + L + G+YE G D ++ NP LS S L + M+ K
Sbjct: 257 CAAITGSIGMLPSASLNEKNFGLYEPAGGSAPDIAGKNIANPIAQILSVSMLVRHGMNLK 316
Query: 460 QQSD 463
+ +D
Sbjct: 317 KIAD 320
>sp|B0CJG1|MNMG_BRUSI tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG
OS=Brucella suis (strain ATCC 23445 / NCTC 10510)
GN=mnmG PE=3 SV=1
Length = 636
Score = 33.1 bits (74), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 51/240 (21%), Positives = 95/240 (39%), Gaps = 28/240 (11%)
Query: 221 VIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIRSGRKPDGVC--- 277
+ EG + +C E + + LA+G++L ++ G F + I R P G
Sbjct: 121 TVVEGGAADLVCDGERISGVTLADGRVLKCGAVVLTTGTFLNGLIHIGEKRFPAGRMGEK 180
Query: 278 LVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQ 337
+G R T + + + + G + + W++ S D F+ + +
Sbjct: 181 PALGLSERLLSFGFTLGRLKTGTPPRLDGRT---IDWQSLDMQSA--DEEPVPFSLMTDR 235
Query: 338 AGSPKLEELLERYWDLMPEYQGVTLDNLEIQRV----IYGIFPTYRDSPLPAAFNRILQF 393
+P++E + R PE + NL + I GI P Y P+ ++I++F
Sbjct: 236 ITTPQIECGITRT---TPETHDIIRANLHRSAMYSGSIEGIGPRY----CPSVEDKIVKF 288
Query: 394 GDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLSASWLFQ 453
GD G Q + G T + +ST + E V+ + + + +P L + L Q
Sbjct: 289 GDRDGHQIFLEPEGLDDDTVYPNGISTSLPEDVQLEILKT---------IPGLEKAVLLQ 339
>sp|Q8FY28|MNMG_BRUSU tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG
OS=Brucella suis biovar 1 (strain 1330) GN=mnmG PE=3
SV=1
Length = 636
Score = 33.1 bits (74), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 51/240 (21%), Positives = 95/240 (39%), Gaps = 28/240 (11%)
Query: 221 VIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIRSGRKPDGVC--- 277
+ EG + +C E + + LA+G++L ++ G F + I R P G
Sbjct: 121 TVVEGGAADLVCDGERISGVTLADGRVLKCGAVVLTTGTFLNGLIHIGEKRFPAGRMGEK 180
Query: 278 LVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQ 337
+G R T + + + + G + + W++ S D F+ + +
Sbjct: 181 PALGLSERLLSFGFTLGRLKTGTPPRLDGRT---IDWQSLDMQSA--DEEPVPFSLMTDR 235
Query: 338 AGSPKLEELLERYWDLMPEYQGVTLDNLEIQRV----IYGIFPTYRDSPLPAAFNRILQF 393
+P++E + R PE + NL + I GI P Y P+ ++I++F
Sbjct: 236 ITTPQIECGITRT---TPETHDIIRANLHRSAMYSGSIEGIGPRY----CPSVEDKIVKF 288
Query: 394 GDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLSASWLFQ 453
GD G Q + G T + +ST + E V+ + + + +P L + L Q
Sbjct: 289 GDRDGHQIFLEPEGLDDDTVYPNGISTSLPEDVQLEILKT---------IPGLEKAVLLQ 339
>sp|A9M9E4|MNMG_BRUC2 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG
OS=Brucella canis (strain ATCC 23365 / NCTC 10854)
GN=mnmG PE=3 SV=1
Length = 636
Score = 33.1 bits (74), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 51/240 (21%), Positives = 95/240 (39%), Gaps = 28/240 (11%)
Query: 221 VIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIRSGRKPDGVC--- 277
+ EG + +C E + + LA+G++L ++ G F + I R P G
Sbjct: 121 TVVEGGAADLVCDGERISGVTLADGRVLKCGAVVLTTGTFLNGLIHIGEKRFPAGRMGEK 180
Query: 278 LVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQ 337
+G R T + + + + G + + W++ S D F+ + +
Sbjct: 181 PALGLSERLLSFGFTLGRLKTGTPPRLDGRT---IDWQSLDMQSA--DEEPVPFSLMTDR 235
Query: 338 AGSPKLEELLERYWDLMPEYQGVTLDNLEIQRV----IYGIFPTYRDSPLPAAFNRILQF 393
+P++E + R PE + NL + I GI P Y P+ ++I++F
Sbjct: 236 ITTPQIECGITRT---TPETHDIIRANLHRSAMYSGSIEGIGPRY----CPSVEDKIVKF 288
Query: 394 GDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLSASWLFQ 453
GD G Q + G T + +ST + E V+ + + + +P L + L Q
Sbjct: 289 GDRDGHQIFLEPEGLDDDTVYPNGISTSLPEDVQLEILKT---------IPGLEKAVLLQ 339
>sp|Q2JTN8|LEU3_SYNJA 3-isopropylmalate dehydrogenase OS=Synechococcus sp. (strain
JA-3-3Ab) GN=leuB PE=3 SV=1
Length = 381
Score = 33.1 bits (74), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 49/125 (39%), Gaps = 20/125 (16%)
Query: 348 ERYWDLMPEYQGVTL-----DNLEIQRVIYGIFPTYRDSPLPAAFNRILQ---FGDASGI 399
ER + EY V L DN +Q V + P F+ IL FGD
Sbjct: 212 ERVTAIAAEYPDVELSHLYVDNAAMQLVRW-----------PKQFDVILTENLFGDILSD 260
Query: 400 QSPVSFGGFGSL-TRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLSASWLFQRAMSA 458
++ + G G L + LG GVYE V G D NP LS + L + ++
Sbjct: 261 EAAMLTGSIGMLPSASLGSSGPGVYEPVHGSAPDIAGQDKANPIAQVLSGAMLLRYSLDQ 320
Query: 459 KQQSD 463
Q +D
Sbjct: 321 PQAAD 325
>sp|O48651|ERG1_PANGI Squalene monooxygenase OS=Panax ginseng PE=2 SV=1
Length = 539
Score = 33.1 bits (74), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 63/136 (46%), Gaps = 11/136 (8%)
Query: 105 DKAVGTFDVIVCG-GTLGIFIATALSFKGLRVAIVERN-TLKGREQEWNISRKELLELVE 162
+ G+ DVI+ G G G +A L+ G RV ++ER+ T + R + L+L+E
Sbjct: 69 ENIAGSTDVIIVGAGVAGSALAYTLANDGRRVHVIERDLTEQDRIVGELLQPGGYLKLIE 128
Query: 163 SGILVEDDIDEATATKFNPNRCGFEGKG-------EIWVEDILNLGVSPAKLIEIVKKRF 215
G+ ED ++E A + +GK E + D+ + ++ ++++
Sbjct: 129 LGL--EDCVNEIDAQRVFGYALYMDGKNTRLSYPLEKFHSDVAGRSFHNGRFVQRMREKA 186
Query: 216 ISLGGVIFEGYSVSSI 231
SL V E +V+S+
Sbjct: 187 ASLPNVRMEQGTVTSL 202
>sp|Q57AJ7|MNMG_BRUAB tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG
OS=Brucella abortus biovar 1 (strain 9-941) GN=mnmG PE=3
SV=1
Length = 636
Score = 33.1 bits (74), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 51/240 (21%), Positives = 95/240 (39%), Gaps = 28/240 (11%)
Query: 221 VIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIRSGRKPDGVC--- 277
+ EG + +C E + + LA+G++L ++ G F + I R P G
Sbjct: 121 TVVEGGAADLVCDGERISGVTLADGRVLKCGAVVLTTGTFLNGLIHIGEKRFPAGRMGEK 180
Query: 278 LVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQ 337
+G R T + + + + G + + W++ S D F+ + +
Sbjct: 181 PALGLSERLLSFGFTLGRLKTGTPPRLDGRT---IDWQSLDMQSA--DEEPVPFSLMTDR 235
Query: 338 AGSPKLEELLERYWDLMPEYQGVTLDNLEIQRV----IYGIFPTYRDSPLPAAFNRILQF 393
+P++E + R PE + NL + I GI P Y P+ ++I++F
Sbjct: 236 ITTPQIECGITRT---TPETHDIIRANLHRSAMYSGSIEGIGPRY----CPSVEDKIVKF 288
Query: 394 GDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLSASWLFQ 453
GD G Q + G T + +ST + E V+ + + + +P L + L Q
Sbjct: 289 GDRDGHQIFLEPEGLDDDTVYPNGISTSLPEDVQLEILKT---------IPGLEKAVLLQ 339
>sp|Q2YR12|MNMG_BRUA2 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG
OS=Brucella abortus (strain 2308) GN=mnmG PE=3 SV=1
Length = 636
Score = 33.1 bits (74), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 51/240 (21%), Positives = 95/240 (39%), Gaps = 28/240 (11%)
Query: 221 VIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIRSGRKPDGVC--- 277
+ EG + +C E + + LA+G++L ++ G F + I R P G
Sbjct: 121 TVVEGGAADLVCDGERISGVTLADGRVLKCGAVVLTTGTFLNGLIHIGEKRFPAGRMGEK 180
Query: 278 LVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQ 337
+G R T + + + + G + + W++ S D F+ + +
Sbjct: 181 PALGLSERLLSFGFTLGRLKTGTPPRLDGRT---IDWQSLDMQSA--DEEPVPFSLMTDR 235
Query: 338 AGSPKLEELLERYWDLMPEYQGVTLDNLEIQRV----IYGIFPTYRDSPLPAAFNRILQF 393
+P++E + R PE + NL + I GI P Y P+ ++I++F
Sbjct: 236 ITTPQIECGITRT---TPETHDIIRANLHRSAMYSGSIEGIGPRY----CPSVEDKIVKF 288
Query: 394 GDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLSASWLFQ 453
GD G Q + G T + +ST + E V+ + + + +P L + L Q
Sbjct: 289 GDRDGHQIFLEPEGLDDDTVYPNGISTSLPEDVQLEILKT---------IPGLEKAVLLQ 339
>sp|C3MQN2|GLYA_SULIL Serine hydroxymethyltransferase OS=Sulfolobus islandicus (strain
L.S.2.15 / Lassen #1) GN=glyA PE=3 SV=1
Length = 433
Score = 32.7 bits (73), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 12/70 (17%)
Query: 195 EDILNLGVSPA-KLIEIVKKRFISLGGVIF-----------EGYSVSSICTYENAAVLLL 242
E+ +N+ V A K+IE VK +F+ LGG ++ ++V + Y+ A V L
Sbjct: 145 EENINVDVDKAIKMIEEVKPKFVVLGGSLYLFPHPTKELAPHVHAVGAKLVYDAAHVYGL 204
Query: 243 AEGKILSSHL 252
EGK+ SS L
Sbjct: 205 IEGKVWSSPL 214
>sp|Q030A3|FOLD_LACLS Bifunctional protein FolD OS=Lactococcus lactis subsp. cremoris
(strain SK11) GN=folD PE=3 SV=2
Length = 285
Score = 32.7 bits (73), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 49/225 (21%), Positives = 88/225 (39%), Gaps = 44/225 (19%)
Query: 152 ISRKELLELVES--------GILVEDDI-----DEATATKFNPNRC--GFE--GKGEIWV 194
+S KELLEL+E GILV+ + +E +P + GF G +W
Sbjct: 71 VSEKELLELIEQYNQSEQWHGILVQLPLPKHISEEKVLLAIDPEKDVDGFHPMNMGRLWA 130
Query: 195 EDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSH--- 251
+ L + +PA ++E+ ++ + L G S+I A +L++A+ + +H
Sbjct: 131 GNPLMIPSTPAGIMEMFREYNVELSGKRAVVIGRSNIVGKPMAQLLMMADATVTIAHSRT 190
Query: 252 -----------LIIDAMGNFSPVVKQIRSGRKPDGVCLVVGSCARGFKDNSTSDVIYSSS 300
+++ A+G + I++ DG ++ R DV +
Sbjct: 191 KNLRELTKEADILVVAIGRD----RMIKADDVKDGAVVIDVGMNRDEDGKLHGDVDFDEV 246
Query: 301 SVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAGSPKLEE 345
EV P G GP+ T M + +A + K+ E
Sbjct: 247 -------KEVASLITPVPGGVGPMTITMLMEQTV--RAATRKMNE 282
>sp|A2RLU5|FOLD_LACLM Bifunctional protein FolD OS=Lactococcus lactis subsp. cremoris
(strain MG1363) GN=folD PE=3 SV=1
Length = 285
Score = 32.7 bits (73), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 49/225 (21%), Positives = 88/225 (39%), Gaps = 44/225 (19%)
Query: 152 ISRKELLELVES--------GILVEDDI-----DEATATKFNPNRC--GFE--GKGEIWV 194
+S KELLEL+E GILV+ + +E +P + GF G +W
Sbjct: 71 VSEKELLELIEQYNQSEQWHGILVQLPLPKHISEEKVLLAIDPEKDVDGFHPMNMGRLWA 130
Query: 195 EDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSH--- 251
+ L + +PA ++E+ ++ + L G S+I A +L++A+ + +H
Sbjct: 131 GNPLMIPSTPAGIMEMFREYNVELSGKRAVVIGRSNIVGKPMAQLLMMADATVTIAHSRT 190
Query: 252 -----------LIIDAMGNFSPVVKQIRSGRKPDGVCLVVGSCARGFKDNSTSDVIYSSS 300
+++ A+G + I++ DG ++ R DV +
Sbjct: 191 KNLRELTKEADILVVAIGRD----RMIKADDVKDGAVVIDVGMNRDEDGKLHGDVDFDEV 246
Query: 301 SVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAGSPKLEE 345
EV P G GP+ T M + +A + K+ E
Sbjct: 247 -------KEVASLITPVPGGVGPMTITMLMEQTV--RAATRKMNE 282
>sp|Q9SA14|LEU31_ARATH 3-isopropylmalate dehydrogenase 1, chloroplastic OS=Arabidopsis
thaliana GN=IMDH1 PE=1 SV=2
Length = 404
Score = 32.7 bits (73), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 56/136 (41%), Gaps = 10/136 (7%)
Query: 348 ERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQ---FGDASGIQSPVS 404
+R L EY V L ++ + + RD P F+ I+ FGD ++ +
Sbjct: 245 KRVTALASEYPDVELSHMYVDNAAMQLV---RD---PKQFDTIVTNNIFGDILSDEASMI 298
Query: 405 FGGFGSL-TRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLSASWLFQRAMSAKQQSD 463
G G L + LG G++E + G D NP LSA+ L + + ++ +
Sbjct: 299 TGSIGMLPSASLGESGPGLFEPIHGSAPDIAGQDKANPLATILSAAMLLKYGLGEEKAAK 358
Query: 464 VSPDFINELLYVNFQC 479
+ D + + L F+
Sbjct: 359 MIEDAVVDALNKGFRT 374
>sp|C3NGT4|GLYA_SULIN Serine hydroxymethyltransferase OS=Sulfolobus islandicus (strain
Y.N.15.51 / Yellowstone #2) GN=glyA PE=3 SV=1
Length = 433
Score = 32.7 bits (73), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 12/70 (17%)
Query: 195 EDILNLGVSPA-KLIEIVKKRFISLGGVIF-----------EGYSVSSICTYENAAVLLL 242
E+ +N+ V A K+IE VK +F+ LGG ++ ++V + Y+ A V L
Sbjct: 145 EENINVDVDKAIKMIEEVKPKFVVLGGSLYLFPHPTKELAPHVHAVGAKLVYDAAHVYGL 204
Query: 243 AEGKILSSHL 252
EGK+ SS L
Sbjct: 205 IEGKVWSSPL 214
>sp|C3MWN2|GLYA_SULIM Serine hydroxymethyltransferase OS=Sulfolobus islandicus (strain
M.14.25 / Kamchatka #1) GN=glyA PE=3 SV=1
Length = 433
Score = 32.7 bits (73), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 12/70 (17%)
Query: 195 EDILNLGVSPA-KLIEIVKKRFISLGGVIF-----------EGYSVSSICTYENAAVLLL 242
E+ +N+ V A K+IE VK +F+ LGG ++ ++V + Y+ A V L
Sbjct: 145 EENINVDVDKAIKMIEEVKPKFVVLGGSLYLFPHPTKELAPHVHAVGAKLVYDAAHVYGL 204
Query: 243 AEGKILSSHL 252
EGK+ SS L
Sbjct: 205 IEGKVWSSPL 214
>sp|C3N6F2|GLYA_SULIA Serine hydroxymethyltransferase OS=Sulfolobus islandicus (strain
M.16.27) GN=glyA PE=3 SV=1
Length = 433
Score = 32.7 bits (73), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 12/70 (17%)
Query: 195 EDILNLGVSPA-KLIEIVKKRFISLGGVIF-----------EGYSVSSICTYENAAVLLL 242
E+ +N+ V A K+IE VK +F+ LGG ++ ++V + Y+ A V L
Sbjct: 145 EENINVDVDKAIKMIEEVKPKFVVLGGSLYLFPHPTKELAPHVHAVGAKLVYDAAHVYGL 204
Query: 243 AEGKILSSHL 252
EGK+ SS L
Sbjct: 205 IEGKVWSSPL 214
>sp|C3NEW0|GLYA_SULIY Serine hydroxymethyltransferase OS=Sulfolobus islandicus (strain
Y.G.57.14 / Yellowstone #1) GN=glyA PE=3 SV=1
Length = 433
Score = 32.7 bits (73), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 12/70 (17%)
Query: 195 EDILNLGVSPA-KLIEIVKKRFISLGGVIF-----------EGYSVSSICTYENAAVLLL 242
E+ +N+ V A K+IE VK +F+ LGG ++ ++V + Y+ A V L
Sbjct: 145 EENINVDVDKAIKMIEEVKPKFVVLGGSLYLFPHPTKELAPHVHAVGAKLVYDAAHVYGL 204
Query: 243 AEGKILSSHL 252
EGK+ SS L
Sbjct: 205 IEGKVWSSPL 214
>sp|Q9FMT1|LEU33_ARATH 3-isopropylmalate dehydrogenase 3, chloroplastic OS=Arabidopsis
thaliana GN=IMDH3 PE=1 SV=1
Length = 409
Score = 32.7 bits (73), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 55/132 (41%), Gaps = 14/132 (10%)
Query: 348 ERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQ---FGDASGIQSPVS 404
+R L EY V L ++ + + RD P F+ I+ FGD ++ +
Sbjct: 248 KRVTALASEYPDVELSHMYVDNAAMQLI---RD---PKQFDTIVTNNIFGDILSDEASMI 301
Query: 405 FGGFGSL-TRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLSASWLFQRAM----SAK 459
G G L + LG G++E + G D NP LSA+ L + + +AK
Sbjct: 302 TGSIGMLPSASLGESGPGLFEPIHGSAPDIAGQDKANPLATILSAAMLLKYGLGEEKAAK 361
Query: 460 QQSDVSPDFINE 471
+ D D +N+
Sbjct: 362 RIEDAVVDALNK 373
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.138 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 226,890,077
Number of Sequences: 539616
Number of extensions: 9965033
Number of successful extensions: 23346
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 52
Number of HSP's that attempted gapping in prelim test: 23322
Number of HSP's gapped (non-prelim): 68
length of query: 584
length of database: 191,569,459
effective HSP length: 123
effective length of query: 461
effective length of database: 125,196,691
effective search space: 57715674551
effective search space used: 57715674551
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)