Query 007945
Match_columns 584
No_of_seqs 370 out of 1669
Neff 7.1
Searched_HMMs 46136
Date Thu Mar 28 17:25:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007945.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007945hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02463 lycopene beta cyclase 100.0 1.7E-39 3.6E-44 353.3 36.5 397 108-537 26-444 (447)
2 PLN02697 lycopene epsilon cycl 100.0 3.1E-36 6.7E-41 332.7 41.3 395 110-538 108-529 (529)
3 TIGR01790 carotene-cycl lycope 100.0 1.2E-31 2.5E-36 287.4 36.5 372 112-519 1-387 (388)
4 COG0644 FixC Dehydrogenases (f 100.0 8.6E-31 1.9E-35 282.2 36.1 317 109-451 2-326 (396)
5 PLN00093 geranylgeranyl diphos 100.0 4.4E-30 9.5E-35 280.5 38.0 307 109-449 38-369 (450)
6 TIGR02023 BchP-ChlP geranylger 100.0 1.5E-29 3.2E-34 271.8 36.0 303 111-450 1-321 (388)
7 TIGR02028 ChlP geranylgeranyl 100.0 9.8E-30 2.1E-34 274.2 33.4 330 111-476 1-359 (398)
8 PRK10015 oxidoreductase; Provi 100.0 4E-29 8.8E-34 271.8 31.4 325 109-452 4-358 (429)
9 PRK08013 oxidoreductase; Provi 100.0 3.2E-29 6.9E-34 270.2 29.3 314 110-445 3-338 (400)
10 COG0654 UbiH 2-polyprenyl-6-me 100.0 3.3E-29 7.1E-34 269.1 29.1 313 110-446 2-332 (387)
11 PRK06617 2-octaprenyl-6-methox 100.0 4.2E-29 9.2E-34 267.0 28.5 283 111-422 2-307 (374)
12 PRK08020 ubiF 2-octaprenyl-3-m 100.0 1.5E-28 3.2E-33 263.7 31.4 311 110-445 5-337 (391)
13 PRK08773 2-octaprenyl-3-methyl 100.0 5.3E-28 1.2E-32 259.7 30.5 312 110-445 6-338 (392)
14 PF05834 Lycopene_cycl: Lycope 100.0 3.3E-28 7.1E-33 260.3 27.9 356 112-512 1-368 (374)
15 PRK10157 putative oxidoreducta 100.0 1.1E-27 2.3E-32 260.6 30.8 325 109-450 4-356 (428)
16 PRK07494 2-octaprenyl-6-methox 100.0 8.4E-28 1.8E-32 257.6 29.4 310 110-446 7-334 (388)
17 PRK05714 2-octaprenyl-3-methyl 100.0 6.4E-28 1.4E-32 260.2 28.1 314 110-446 2-342 (405)
18 TIGR01989 COQ6 Ubiquinone bios 100.0 1.9E-27 4.1E-32 259.5 31.6 316 111-445 1-389 (437)
19 PRK08850 2-octaprenyl-6-methox 100.0 1.2E-27 2.5E-32 258.4 29.0 313 110-444 4-337 (405)
20 PRK06185 hypothetical protein; 100.0 3.9E-27 8.5E-32 254.0 33.0 311 109-445 5-338 (407)
21 PRK08849 2-octaprenyl-3-methyl 100.0 2.9E-27 6.4E-32 253.6 30.5 305 110-445 3-330 (384)
22 PRK07333 2-octaprenyl-6-methox 100.0 5.8E-27 1.3E-31 252.1 32.5 312 110-444 1-335 (403)
23 PRK08244 hypothetical protein; 100.0 1.3E-26 2.7E-31 256.7 34.1 307 110-444 2-324 (493)
24 PRK07364 2-octaprenyl-6-methox 100.0 1.2E-26 2.6E-31 250.8 32.1 312 109-445 17-350 (415)
25 PRK07190 hypothetical protein; 100.0 2E-26 4.4E-31 254.2 34.2 297 110-428 5-315 (487)
26 PRK06834 hypothetical protein; 100.0 1.7E-26 3.7E-31 255.0 32.3 306 110-445 3-318 (488)
27 TIGR01988 Ubi-OHases Ubiquinon 100.0 1.2E-26 2.5E-31 247.5 29.4 309 112-446 1-333 (385)
28 TIGR02032 GG-red-SF geranylger 100.0 3.5E-26 7.5E-31 234.2 31.3 287 111-422 1-295 (295)
29 PF01494 FAD_binding_3: FAD bi 100.0 4.9E-28 1.1E-32 253.4 17.5 322 110-448 1-347 (356)
30 PRK08294 phenol 2-monooxygenas 100.0 1.1E-25 2.4E-30 255.4 34.9 388 108-515 30-472 (634)
31 PRK08243 4-hydroxybenzoate 3-m 100.0 6.7E-26 1.4E-30 243.7 31.4 314 110-447 2-333 (392)
32 PRK06996 hypothetical protein; 100.0 5.9E-26 1.3E-30 244.7 30.0 312 107-445 8-341 (398)
33 PRK09126 hypothetical protein; 100.0 1.9E-26 4.2E-31 247.3 26.0 314 110-447 3-338 (392)
34 PRK07608 ubiquinone biosynthes 99.9 7.3E-26 1.6E-30 242.4 29.9 310 110-447 5-337 (388)
35 PRK06183 mhpA 3-(3-hydroxyphen 99.9 1.4E-25 3.1E-30 250.9 33.4 308 109-445 9-339 (538)
36 PRK06184 hypothetical protein; 99.9 9E-26 2E-30 250.4 30.9 298 110-428 3-321 (502)
37 PRK07045 putative monooxygenas 99.9 1.5E-25 3.4E-30 240.3 31.3 317 110-446 5-340 (388)
38 TIGR01984 UbiH 2-polyprenyl-6- 99.9 5E-26 1.1E-30 243.1 26.8 311 112-447 1-331 (382)
39 PRK11445 putative oxidoreducta 99.9 6.1E-25 1.3E-29 233.0 32.8 312 110-457 1-326 (351)
40 PTZ00367 squalene epoxidase; P 99.9 1.9E-24 4.1E-29 241.4 34.8 298 110-426 33-375 (567)
41 PRK08132 FAD-dependent oxidore 99.9 4.1E-24 8.9E-29 239.6 31.7 314 109-445 22-352 (547)
42 PLN02985 squalene monooxygenas 99.9 2.5E-23 5.3E-28 230.9 37.4 298 108-424 41-362 (514)
43 PRK05732 2-octaprenyl-6-methox 99.9 1.2E-23 2.5E-28 225.7 33.2 316 110-448 3-341 (395)
44 TIGR01789 lycopene_cycl lycope 99.9 1E-23 2.2E-28 225.3 29.5 340 112-506 1-359 (370)
45 TIGR02360 pbenz_hydroxyl 4-hyd 99.9 1E-23 2.2E-28 226.8 29.5 298 110-427 2-318 (390)
46 PRK07588 hypothetical protein; 99.9 8.3E-24 1.8E-28 227.2 28.8 311 112-449 2-334 (391)
47 PRK06753 hypothetical protein; 99.9 5E-24 1.1E-28 227.1 26.7 304 112-448 2-322 (373)
48 PRK07538 hypothetical protein; 99.9 1.7E-23 3.6E-28 226.7 30.2 310 112-449 2-351 (413)
49 PRK06475 salicylate hydroxylas 99.9 1.4E-23 3.1E-28 226.2 27.3 298 111-423 3-327 (400)
50 PRK05868 hypothetical protein; 99.9 9.7E-23 2.1E-27 217.9 31.2 309 111-448 2-336 (372)
51 PRK06126 hypothetical protein; 99.9 6.4E-23 1.4E-27 229.9 30.4 297 110-427 7-342 (545)
52 PRK08163 salicylate hydroxylas 99.9 4E-23 8.7E-28 221.9 27.4 295 110-424 4-322 (396)
53 PRK06847 hypothetical protein; 99.9 1.1E-22 2.4E-27 216.7 30.5 291 110-424 4-318 (375)
54 PRK07236 hypothetical protein; 99.9 5.8E-22 1.3E-26 212.7 27.6 153 110-268 6-161 (386)
55 PLN02927 antheraxanthin epoxid 99.9 3E-20 6.5E-25 209.3 30.8 318 109-445 80-427 (668)
56 TIGR03219 salicylate_mono sali 99.9 1.7E-20 3.6E-25 203.3 25.3 318 112-445 2-354 (414)
57 KOG3855 Monooxygenase involved 99.9 4.4E-21 9.6E-26 198.5 16.1 325 110-444 36-425 (481)
58 PF04820 Trp_halogenase: Trypt 99.8 4.2E-19 9.1E-24 194.4 24.8 302 112-449 1-370 (454)
59 KOG2614 Kynurenine 3-monooxyge 99.8 3.2E-19 6.9E-24 186.1 19.7 294 111-428 3-328 (420)
60 KOG1298 Squalene monooxygenase 99.8 9.1E-17 2E-21 165.1 27.5 393 107-548 42-461 (509)
61 PRK08255 salicylyl-CoA 5-hydro 99.7 2.8E-16 6E-21 182.6 23.0 285 112-425 2-306 (765)
62 PF08491 SE: Squalene epoxidas 99.4 4.7E-11 1E-15 120.8 22.2 253 250-548 2-264 (276)
63 PRK04176 ribulose-1,5-biphosph 99.4 1E-11 2.2E-16 126.3 16.6 133 110-268 25-180 (257)
64 TIGR00292 thiazole biosynthesi 99.4 1.7E-11 3.6E-16 124.6 16.3 132 110-267 21-176 (254)
65 PF01946 Thi4: Thi4 family; PD 99.3 1.2E-11 2.6E-16 120.2 11.5 131 110-266 17-170 (230)
66 COG1635 THI4 Ribulose 1,5-bisp 99.3 7.7E-11 1.7E-15 114.1 14.7 132 110-267 30-184 (262)
67 KOG2415 Electron transfer flav 99.3 1.2E-09 2.6E-14 114.0 24.0 333 108-459 74-455 (621)
68 PF01266 DAO: FAD dependent ox 99.3 4.6E-10 1E-14 117.5 21.5 66 201-267 143-210 (358)
69 PRK13369 glycerol-3-phosphate 99.2 3E-09 6.6E-14 118.5 26.9 67 201-267 151-222 (502)
70 PRK12266 glpD glycerol-3-phosp 99.2 3.5E-09 7.6E-14 118.1 25.8 66 201-266 151-222 (508)
71 COG2081 Predicted flavoprotein 99.1 4.2E-10 9.1E-15 118.1 12.8 148 110-261 3-167 (408)
72 TIGR01377 soxA_mon sarcosine o 99.0 5.4E-09 1.2E-13 111.6 17.2 70 200-270 140-210 (380)
73 PRK05192 tRNA uridine 5-carbox 99.0 2.9E-09 6.3E-14 119.2 15.4 145 110-261 4-157 (618)
74 COG0579 Predicted dehydrogenas 99.0 5.6E-09 1.2E-13 112.6 16.4 71 200-270 148-221 (429)
75 PRK11728 hydroxyglutarate oxid 99.0 9.7E-09 2.1E-13 110.7 17.7 69 200-269 144-213 (393)
76 PF03486 HI0933_like: HI0933-l 99.0 3.3E-09 7.1E-14 114.8 13.4 148 111-261 1-166 (409)
77 PRK11259 solA N-methyltryptoph 99.0 1.3E-08 2.8E-13 108.5 17.3 61 201-262 145-205 (376)
78 TIGR01373 soxB sarcosine oxida 98.9 3.6E-07 7.8E-12 98.9 26.9 69 201-270 179-250 (407)
79 PF01134 GIDA: Glucose inhibit 98.9 9.8E-09 2.1E-13 109.5 14.2 140 112-259 1-150 (392)
80 TIGR01320 mal_quin_oxido malat 98.9 4.4E-08 9.5E-13 108.6 18.6 70 201-270 174-250 (483)
81 PRK05257 malate:quinone oxidor 98.9 3.8E-08 8.3E-13 109.3 17.3 71 200-270 178-256 (494)
82 PRK12409 D-amino acid dehydrog 98.9 2.8E-08 6E-13 107.6 15.4 67 202-268 194-266 (410)
83 PF12831 FAD_oxidored: FAD dep 98.9 6.8E-10 1.5E-14 121.2 2.8 147 112-268 1-156 (428)
84 PRK01747 mnmC bifunctional tRN 98.9 2.5E-08 5.3E-13 114.9 15.2 61 201-262 404-464 (662)
85 PRK11101 glpA sn-glycerol-3-ph 98.9 2.8E-08 6E-13 111.9 14.6 69 200-268 144-219 (546)
86 PF13738 Pyr_redox_3: Pyridine 98.8 1.8E-08 3.9E-13 97.9 10.3 136 114-262 1-139 (203)
87 TIGR03329 Phn_aa_oxid putative 98.8 3.7E-08 8.1E-13 108.5 13.8 61 200-262 178-238 (460)
88 PTZ00383 malate:quinone oxidor 98.8 1.8E-07 3.9E-12 103.8 17.8 69 201-270 207-283 (497)
89 TIGR01292 TRX_reduct thioredox 98.8 1.1E-07 2.4E-12 97.6 14.0 111 111-261 1-112 (300)
90 COG0578 GlpA Glycerol-3-phosph 98.7 2.4E-06 5.2E-11 94.3 24.7 69 199-267 158-232 (532)
91 PLN02464 glycerol-3-phosphate 98.7 4.4E-06 9.6E-11 95.6 27.1 68 201-268 228-304 (627)
92 PRK13339 malate:quinone oxidor 98.7 4.1E-07 8.9E-12 100.8 17.8 69 201-269 180-256 (497)
93 KOG2844 Dimethylglycine dehydr 98.7 6.4E-07 1.4E-11 98.8 18.5 67 199-266 181-248 (856)
94 PLN02661 Putative thiazole syn 98.7 3.2E-07 6.9E-12 96.7 15.5 130 110-265 92-248 (357)
95 PRK15317 alkyl hydroperoxide r 98.7 2.9E-07 6.2E-12 103.1 14.8 113 108-261 209-322 (517)
96 PRK00711 D-amino acid dehydrog 98.7 5.5E-07 1.2E-11 97.5 16.6 67 201-268 197-265 (416)
97 TIGR00136 gidA glucose-inhibit 98.7 2.3E-07 5E-12 104.0 13.7 141 111-261 1-154 (617)
98 PRK07804 L-aspartate oxidase; 98.6 5.9E-07 1.3E-11 101.1 16.5 59 205-263 144-212 (541)
99 PRK06481 fumarate reductase fl 98.6 1.1E-06 2.4E-11 98.2 17.4 58 205-262 190-252 (506)
100 TIGR03364 HpnW_proposed FAD de 98.6 4.1E-07 9E-12 96.8 13.3 57 201-262 141-198 (365)
101 PRK08274 tricarballylate dehyd 98.6 1.2E-06 2.7E-11 96.6 16.9 58 205-262 131-193 (466)
102 PRK06854 adenylylsulfate reduc 98.6 1.2E-06 2.7E-11 99.8 17.0 153 110-262 11-196 (608)
103 TIGR01812 sdhA_frdA_Gneg succi 98.6 1.1E-06 2.3E-11 99.6 16.0 60 205-264 129-194 (566)
104 TIGR00275 flavoprotein, HI0933 98.6 3.8E-07 8.2E-12 98.8 11.8 153 114-269 1-179 (400)
105 PF00890 FAD_binding_2: FAD bi 98.5 1.8E-06 3.9E-11 93.6 16.5 63 204-266 140-209 (417)
106 TIGR00551 nadB L-aspartate oxi 98.5 1.6E-06 3.4E-11 96.5 16.0 60 204-263 127-191 (488)
107 COG0492 TrxB Thioredoxin reduc 98.5 9.3E-07 2E-11 92.2 13.3 114 110-264 3-118 (305)
108 KOG2820 FAD-dependent oxidored 98.5 9.9E-07 2.1E-11 90.7 12.9 168 108-277 5-230 (399)
109 TIGR03140 AhpF alkyl hydropero 98.5 1.2E-06 2.5E-11 98.1 14.6 113 108-261 210-323 (515)
110 PRK09231 fumarate reductase fl 98.5 2E-06 4.4E-11 97.6 16.1 60 205-264 133-199 (582)
111 TIGR01813 flavo_cyto_c flavocy 98.5 2E-06 4.3E-11 94.2 15.2 60 203-262 128-193 (439)
112 PRK06175 L-aspartate oxidase; 98.5 2.6E-06 5.5E-11 93.4 15.8 58 205-262 128-190 (433)
113 PRK07121 hypothetical protein; 98.5 5E-06 1.1E-10 92.5 17.9 59 204-262 176-240 (492)
114 PTZ00139 Succinate dehydrogena 98.5 2.7E-06 5.9E-11 97.2 16.1 58 205-262 166-230 (617)
115 PRK05945 sdhA succinate dehydr 98.5 2.8E-06 6E-11 96.4 15.9 59 205-263 135-199 (575)
116 TIGR03143 AhpF_homolog putativ 98.5 1.9E-06 4.2E-11 97.3 14.5 111 110-262 4-115 (555)
117 PLN02172 flavin-containing mon 98.4 3.3E-06 7.2E-11 93.1 14.9 145 110-261 10-173 (461)
118 PRK09078 sdhA succinate dehydr 98.4 4.3E-06 9.4E-11 95.2 16.2 58 205-262 149-213 (598)
119 PRK06069 sdhA succinate dehydr 98.4 3.5E-06 7.5E-11 95.7 15.4 58 206-263 138-202 (577)
120 TIGR01176 fum_red_Fp fumarate 98.4 6E-06 1.3E-10 93.7 16.8 59 205-263 132-197 (580)
121 COG0665 DadA Glycine/D-amino a 98.4 4.8E-06 1E-10 89.0 14.8 63 201-264 152-215 (387)
122 PRK06452 sdhA succinate dehydr 98.4 7.6E-06 1.6E-10 92.7 16.7 59 205-263 136-200 (566)
123 PRK07057 sdhA succinate dehydr 98.3 9.7E-06 2.1E-10 92.3 16.6 59 205-263 148-213 (591)
124 PLN00128 Succinate dehydrogena 98.3 7.5E-06 1.6E-10 93.7 15.7 59 205-263 187-252 (635)
125 PRK08401 L-aspartate oxidase; 98.3 5.8E-06 1.3E-10 91.4 14.3 152 111-264 2-178 (466)
126 PRK07233 hypothetical protein; 98.3 0.00087 1.9E-08 72.7 30.9 55 206-260 199-253 (434)
127 PRK07573 sdhA succinate dehydr 98.3 8.6E-06 1.9E-10 93.4 15.8 56 208-263 173-234 (640)
128 PRK06263 sdhA succinate dehydr 98.3 9.2E-06 2E-10 91.6 15.2 58 205-262 134-198 (543)
129 PTZ00363 rab-GDP dissociation 98.3 1.3E-05 2.8E-10 87.9 15.7 56 207-262 234-291 (443)
130 PRK08205 sdhA succinate dehydr 98.3 1.4E-05 3E-10 90.9 16.0 59 205-263 140-208 (583)
131 PRK08275 putative oxidoreducta 98.3 1.5E-05 3.2E-10 90.1 16.2 59 205-263 137-202 (554)
132 TIGR01424 gluta_reduc_2 glutat 98.3 6.7E-06 1.4E-10 90.4 12.4 137 110-261 2-142 (446)
133 PRK05976 dihydrolipoamide dehy 98.3 6.3E-06 1.4E-10 91.3 12.0 141 109-261 3-154 (472)
134 PRK07803 sdhA succinate dehydr 98.2 2.1E-05 4.6E-10 90.0 16.6 36 110-145 8-44 (626)
135 PRK06416 dihydrolipoamide dehy 98.2 8.2E-06 1.8E-10 90.0 12.8 138 109-261 3-146 (462)
136 PRK06134 putative FAD-binding 98.2 2.5E-05 5.3E-10 88.8 16.9 60 203-262 215-279 (581)
137 PRK08071 L-aspartate oxidase; 98.2 2.2E-05 4.7E-10 87.9 15.6 57 205-262 130-191 (510)
138 PRK08958 sdhA succinate dehydr 98.2 2E-05 4.4E-10 89.6 15.5 59 205-263 143-208 (588)
139 PRK06467 dihydrolipoamide dehy 98.2 1.1E-05 2.4E-10 89.3 13.1 139 109-261 3-148 (471)
140 PRK05249 soluble pyridine nucl 98.2 1E-05 2.2E-10 89.3 12.6 139 110-261 5-149 (461)
141 PTZ00058 glutathione reductase 98.2 4.2E-06 9.2E-11 94.3 9.8 38 109-146 47-85 (561)
142 PRK12834 putative FAD-binding 98.2 3.2E-05 6.9E-10 87.4 16.8 34 109-142 3-37 (549)
143 PLN02815 L-aspartate oxidase 98.2 1.8E-05 4E-10 89.9 14.8 159 104-263 23-224 (594)
144 PRK12842 putative succinate de 98.2 2.5E-05 5.5E-10 88.6 15.5 57 206-262 215-276 (574)
145 PRK12416 protoporphyrinogen ox 98.2 0.0012 2.7E-08 72.7 28.2 38 220-257 239-276 (463)
146 TIGR01421 gluta_reduc_1 glutat 98.2 1.3E-05 2.8E-10 88.3 12.4 137 110-261 2-141 (450)
147 PRK08626 fumarate reductase fl 98.2 2.6E-05 5.6E-10 89.7 15.3 58 206-263 159-222 (657)
148 PRK10262 thioredoxin reductase 98.2 2.9E-05 6.3E-10 81.4 14.3 111 110-261 6-117 (321)
149 TIGR01350 lipoamide_DH dihydro 98.2 5.7E-05 1.2E-09 83.2 17.2 58 207-264 213-272 (461)
150 PRK12845 3-ketosteroid-delta-1 98.2 2.9E-05 6.3E-10 87.9 15.0 58 207-264 219-281 (564)
151 PRK05335 tRNA (uracil-5-)-meth 98.1 8.7E-06 1.9E-10 88.0 9.8 113 111-232 3-126 (436)
152 PRK08641 sdhA succinate dehydr 98.1 6E-05 1.3E-09 85.8 16.6 60 204-263 132-202 (589)
153 PRK06370 mercuric reductase; V 98.1 1.5E-05 3.3E-10 87.9 11.4 136 109-262 4-146 (463)
154 PRK06116 glutathione reductase 98.1 1.5E-05 3.2E-10 87.7 10.9 36 110-145 4-40 (450)
155 PLN02507 glutathione reductase 98.1 3.3E-05 7.2E-10 86.2 13.6 51 208-261 127-179 (499)
156 PRK12839 hypothetical protein; 98.1 6.2E-05 1.3E-09 85.4 15.9 60 203-262 212-277 (572)
157 PRK12837 3-ketosteroid-delta-1 98.1 3.6E-05 7.8E-10 86.2 13.9 36 110-145 7-42 (513)
158 PRK07843 3-ketosteroid-delta-1 98.1 4.8E-05 1E-09 86.0 14.8 57 206-262 209-270 (557)
159 PRK11883 protoporphyrinogen ox 98.1 0.0027 5.8E-08 69.4 27.9 39 221-259 235-273 (451)
160 PRK07395 L-aspartate oxidase; 98.1 5.2E-05 1.1E-09 85.7 14.3 57 205-261 134-197 (553)
161 PRK12835 3-ketosteroid-delta-1 98.0 5.7E-05 1.2E-09 85.9 14.3 37 109-145 10-47 (584)
162 PRK09077 L-aspartate oxidase; 98.0 0.00011 2.3E-09 82.9 16.3 60 205-264 138-210 (536)
163 COG2072 TrkA Predicted flavopr 98.0 2.8E-05 6.1E-10 85.4 11.3 129 109-261 7-144 (443)
164 PRK14694 putative mercuric red 98.0 3.8E-05 8.2E-10 85.0 12.3 37 109-145 5-42 (468)
165 PRK09897 hypothetical protein; 98.0 5.5E-05 1.2E-09 84.7 13.4 146 111-261 2-166 (534)
166 KOG2853 Possible oxidoreductas 98.0 0.00031 6.7E-09 72.7 17.4 71 202-273 240-333 (509)
167 TIGR00137 gid_trmFO tRNA:m(5)U 98.0 3.6E-05 7.8E-10 83.6 11.4 134 111-268 1-146 (433)
168 PRK12843 putative FAD-binding 98.0 4.3E-05 9.3E-10 86.8 12.6 60 205-264 221-285 (578)
169 PRK12844 3-ketosteroid-delta-1 98.0 8.1E-05 1.8E-09 84.2 14.5 57 206-262 209-270 (557)
170 PRK07512 L-aspartate oxidase; 98.0 7.1E-05 1.5E-09 83.8 13.8 59 204-262 135-198 (513)
171 PF00070 Pyr_redox: Pyridine n 98.0 8.4E-05 1.8E-09 61.6 10.9 78 113-245 2-80 (80)
172 KOG1399 Flavin-containing mono 98.0 5.5E-05 1.2E-09 82.8 12.2 135 110-261 6-153 (448)
173 TIGR03452 mycothione_red mycot 98.0 3.4E-05 7.4E-10 85.0 10.2 37 110-147 2-38 (452)
174 PLN02612 phytoene desaturase 97.9 0.0057 1.2E-07 69.5 28.1 53 207-259 310-364 (567)
175 PF00743 FMO-like: Flavin-bind 97.9 9.6E-05 2.1E-09 83.0 13.6 137 112-261 3-150 (531)
176 PRK06327 dihydrolipoamide dehy 97.9 8E-05 1.7E-09 82.6 12.6 31 110-140 4-35 (475)
177 PRK06115 dihydrolipoamide dehy 97.9 7.1E-05 1.5E-09 82.8 12.1 36 110-145 3-40 (466)
178 TIGR02061 aprA adenosine phosp 97.9 0.00018 4E-09 82.0 15.5 57 206-262 127-192 (614)
179 PTZ00306 NADH-dependent fumara 97.9 0.00022 4.8E-09 87.2 16.9 38 108-145 407-445 (1167)
180 TIGR02485 CobZ_N-term precorri 97.9 0.00017 3.7E-09 79.0 14.5 58 205-262 123-184 (432)
181 PRK07251 pyridine nucleotide-d 97.9 4.8E-05 1E-09 83.4 10.1 33 110-142 3-36 (438)
182 TIGR01811 sdhA_Bsu succinate d 97.9 0.00016 3.5E-09 82.6 14.6 30 113-142 1-31 (603)
183 PRK13748 putative mercuric red 97.9 9.3E-05 2E-09 83.7 12.2 37 110-146 98-135 (561)
184 PF06039 Mqo: Malate:quinone o 97.8 0.00028 6.1E-09 76.3 14.5 69 201-269 177-253 (488)
185 PF13434 K_oxygenase: L-lysine 97.8 1.9E-05 4.1E-10 83.9 5.3 144 110-263 2-161 (341)
186 KOG0042 Glycerol-3-phosphate d 97.8 5.5E-05 1.2E-09 82.2 8.6 67 203-269 222-295 (680)
187 PRK08010 pyridine nucleotide-d 97.8 0.00011 2.4E-09 80.6 11.2 33 110-142 3-36 (441)
188 TIGR01372 soxA sarcosine oxida 97.8 0.00018 3.9E-09 86.7 13.8 109 109-261 162-286 (985)
189 PRK07818 dihydrolipoamide dehy 97.8 0.00021 4.6E-09 79.0 13.4 37 110-146 4-41 (466)
190 PLN02546 glutathione reductase 97.8 0.00017 3.8E-09 81.4 12.8 33 108-140 77-110 (558)
191 COG1233 Phytoene dehydrogenase 97.8 1.9E-05 4.1E-10 87.8 4.9 54 206-259 225-279 (487)
192 PRK07846 mycothione reductase; 97.8 0.00011 2.5E-09 80.9 10.8 37 110-147 1-37 (451)
193 COG1053 SdhA Succinate dehydro 97.8 0.00015 3.3E-09 81.7 11.9 57 205-261 138-202 (562)
194 COG0445 GidA Flavin-dependent 97.8 4.3E-05 9.4E-10 83.4 7.1 139 110-260 4-157 (621)
195 PRK07845 flavoprotein disulfid 97.7 0.00023 4.9E-09 78.8 12.4 141 111-262 2-152 (466)
196 PRK04965 NADH:flavorubredoxin 97.7 0.00042 9.1E-09 74.4 14.0 104 111-268 142-248 (377)
197 TIGR02053 MerA mercuric reduct 97.7 0.00017 3.6E-09 79.7 10.8 36 111-146 1-37 (463)
198 PRK06292 dihydrolipoamide dehy 97.7 0.00015 3.3E-09 79.9 10.4 36 110-145 3-39 (460)
199 PF07992 Pyr_redox_2: Pyridine 97.7 6.3E-05 1.4E-09 72.6 6.3 109 112-261 1-122 (201)
200 PRK13800 putative oxidoreducta 97.7 0.00074 1.6E-08 80.7 16.5 36 108-143 11-47 (897)
201 PRK09754 phenylpropionate diox 97.7 0.00038 8.2E-09 75.3 12.8 96 112-262 146-242 (396)
202 COG1249 Lpd Pyruvate/2-oxoglut 97.6 0.0003 6.5E-09 77.3 11.0 144 109-264 3-150 (454)
203 COG3634 AhpF Alkyl hydroperoxi 97.6 7.5E-05 1.6E-09 77.2 5.9 110 110-260 211-324 (520)
204 COG3380 Predicted NAD/FAD-depe 97.6 0.00033 7.1E-09 70.6 10.1 130 112-256 3-155 (331)
205 KOG2665 Predicted FAD-dependen 97.6 0.00049 1.1E-08 70.6 11.3 65 201-265 192-261 (453)
206 TIGR01423 trypano_reduc trypan 97.6 0.00043 9.2E-09 77.1 12.0 33 109-141 2-36 (486)
207 PTZ00052 thioredoxin reductase 97.6 0.00016 3.5E-09 80.7 8.0 32 110-141 5-37 (499)
208 PRK05249 soluble pyridine nucl 97.6 0.00085 1.8E-08 74.0 13.6 98 112-264 177-275 (461)
209 PF13454 NAD_binding_9: FAD-NA 97.6 0.001 2.2E-08 62.5 12.0 42 218-259 113-155 (156)
210 PRK14727 putative mercuric red 97.5 0.00056 1.2E-08 76.0 11.6 36 110-145 16-53 (479)
211 COG1231 Monoamine oxidase [Ami 97.5 0.0011 2.3E-08 71.6 12.8 47 210-256 210-257 (450)
212 TIGR01438 TGR thioredoxin and 97.5 0.00076 1.6E-08 75.1 12.0 32 110-141 2-34 (484)
213 TIGR02730 carot_isom carotene 97.5 9.6E-05 2.1E-09 82.3 4.8 62 206-267 230-292 (493)
214 KOG2311 NAD/FAD-utilizing prot 97.5 0.00037 7.9E-09 74.9 8.4 140 109-260 27-185 (679)
215 PRK12779 putative bifunctional 97.5 0.00034 7.3E-09 83.6 9.0 98 110-261 306-404 (944)
216 COG0029 NadB Aspartate oxidase 97.4 0.00091 2E-08 72.7 11.3 148 112-265 9-200 (518)
217 PTZ00153 lipoamide dehydrogena 97.4 0.00089 1.9E-08 77.0 11.9 36 110-145 116-154 (659)
218 PRK06912 acoL dihydrolipoamide 97.3 0.0014 3E-08 72.4 11.7 35 112-146 2-37 (458)
219 PRK12831 putative oxidoreducta 97.3 0.0005 1.1E-08 76.1 8.0 36 110-145 140-176 (464)
220 TIGR03169 Nterm_to_SelD pyridi 97.3 0.0012 2.7E-08 70.3 10.2 48 212-262 61-108 (364)
221 PRK09564 coenzyme A disulfide 97.3 0.0018 3.9E-08 71.0 11.3 108 112-261 2-115 (444)
222 PRK06416 dihydrolipoamide dehy 97.3 0.0036 7.9E-08 69.1 13.7 97 112-263 174-274 (462)
223 PF13450 NAD_binding_8: NAD(P) 97.3 0.00043 9.3E-09 55.8 4.7 31 115-145 1-32 (68)
224 TIGR02352 thiamin_ThiO glycine 97.2 0.014 3.1E-07 60.8 17.3 62 201-263 133-195 (337)
225 PF00732 GMC_oxred_N: GMC oxid 97.2 0.00027 5.8E-09 73.0 4.0 33 111-143 1-35 (296)
226 PTZ00318 NADH dehydrogenase-li 97.2 0.002 4.4E-08 70.4 10.9 107 110-261 10-125 (424)
227 TIGR01424 gluta_reduc_2 glutat 97.2 0.0044 9.5E-08 68.2 13.3 97 112-263 168-265 (446)
228 PLN02507 glutathione reductase 97.2 0.0046 1E-07 69.1 13.6 98 112-264 205-303 (499)
229 TIGR02733 desat_CrtD C-3',4' d 97.2 0.0004 8.6E-09 77.3 4.9 55 206-260 233-293 (492)
230 PRK12778 putative bifunctional 97.1 0.00083 1.8E-08 78.8 7.6 35 110-144 431-466 (752)
231 PRK06116 glutathione reductase 97.1 0.0052 1.1E-07 67.6 13.5 98 112-264 169-268 (450)
232 TIGR01421 gluta_reduc_1 glutat 97.1 0.0052 1.1E-07 67.8 13.1 98 112-264 168-268 (450)
233 PRK07818 dihydrolipoamide dehy 97.1 0.0052 1.1E-07 68.0 13.1 97 112-263 174-275 (466)
234 PRK07845 flavoprotein disulfid 97.1 0.008 1.7E-07 66.6 14.2 98 112-264 179-277 (466)
235 TIGR02374 nitri_red_nirB nitri 97.1 0.0046 1E-07 72.9 12.6 102 112-267 142-246 (785)
236 PRK09754 phenylpropionate diox 97.1 0.0023 5.1E-08 69.2 9.5 106 111-261 4-112 (396)
237 PRK06370 mercuric reductase; V 97.0 0.0077 1.7E-07 66.6 13.3 98 111-263 172-273 (463)
238 KOG1335 Dihydrolipoamide dehyd 97.0 0.0026 5.6E-08 67.0 8.7 35 109-143 38-73 (506)
239 PRK09853 putative selenate red 97.0 0.0034 7.3E-08 74.8 10.8 36 110-145 539-575 (1019)
240 PRK06327 dihydrolipoamide dehy 97.0 0.0091 2E-07 66.3 13.5 98 112-264 185-287 (475)
241 PRK11749 dihydropyrimidine deh 97.0 0.002 4.3E-08 71.1 8.2 35 110-144 140-175 (457)
242 TIGR02734 crtI_fam phytoene de 97.0 0.00062 1.3E-08 75.9 4.1 61 206-266 220-281 (502)
243 TIGR02053 MerA mercuric reduct 96.9 0.01 2.2E-07 65.5 13.4 99 111-264 167-269 (463)
244 PRK07251 pyridine nucleotide-d 96.9 0.011 2.5E-07 64.7 13.6 96 112-263 159-255 (438)
245 PRK06912 acoL dihydrolipoamide 96.9 0.011 2.5E-07 65.2 13.5 97 112-263 172-270 (458)
246 PRK12775 putative trifunctiona 96.9 0.0018 3.9E-08 78.1 7.6 36 110-145 430-466 (1006)
247 COG1249 Lpd Pyruvate/2-oxoglut 96.9 0.011 2.4E-07 65.1 13.0 98 112-264 175-275 (454)
248 PTZ00052 thioredoxin reductase 96.9 0.012 2.6E-07 65.8 13.5 97 112-264 184-281 (499)
249 COG2509 Uncharacterized FAD-de 96.9 0.0085 1.8E-07 64.7 11.5 57 206-262 174-231 (486)
250 PRK14989 nitrite reductase sub 96.9 0.0086 1.9E-07 71.0 12.8 103 112-268 147-254 (847)
251 PRK06115 dihydrolipoamide dehy 96.9 0.014 3E-07 64.7 13.8 97 112-263 176-278 (466)
252 COG0446 HcaD Uncharacterized N 96.8 0.0097 2.1E-07 63.6 12.0 98 111-262 137-238 (415)
253 PRK07846 mycothione reductase; 96.8 0.015 3.2E-07 64.2 13.7 98 111-264 167-265 (451)
254 PRK02106 choline dehydrogenase 96.8 0.0012 2.6E-08 74.9 5.1 33 110-142 5-39 (560)
255 PRK04965 NADH:flavorubredoxin 96.8 0.01 2.3E-07 63.6 12.0 105 111-261 3-111 (377)
256 TIGR03385 CoA_CoA_reduc CoA-di 96.8 0.012 2.6E-07 64.2 12.6 101 111-267 138-241 (427)
257 PLN02576 protoporphyrinogen ox 96.8 0.0015 3.2E-08 72.7 5.3 38 108-145 10-49 (496)
258 PRK14727 putative mercuric red 96.8 0.017 3.7E-07 64.2 13.5 96 112-264 190-286 (479)
259 TIGR00031 UDP-GALP_mutase UDP- 96.8 0.0016 3.6E-08 70.0 5.1 35 111-145 2-37 (377)
260 PRK05976 dihydrolipoamide dehy 96.8 0.015 3.2E-07 64.5 12.8 97 112-263 182-283 (472)
261 TIGR02374 nitri_red_nirB nitri 96.7 0.0058 1.3E-07 72.1 10.0 45 215-261 64-108 (785)
262 TIGR02462 pyranose_ox pyranose 96.7 0.0016 3.4E-08 73.3 4.9 35 111-145 1-36 (544)
263 PRK07208 hypothetical protein; 96.7 0.0017 3.8E-08 71.8 5.2 57 206-262 219-281 (479)
264 PRK13512 coenzyme A disulfide 96.7 0.0096 2.1E-07 65.4 10.9 110 112-262 3-118 (438)
265 TIGR01423 trypano_reduc trypan 96.7 0.017 3.6E-07 64.5 12.9 98 112-264 189-291 (486)
266 PRK08010 pyridine nucleotide-d 96.7 0.023 4.9E-07 62.4 13.5 96 112-263 160-256 (441)
267 PRK14694 putative mercuric red 96.6 0.023 5E-07 62.9 13.4 95 112-263 180-275 (468)
268 COG0562 Glf UDP-galactopyranos 96.6 0.0022 4.7E-08 66.3 4.7 36 110-145 1-37 (374)
269 PRK13748 putative mercuric red 96.6 0.022 4.8E-07 64.5 13.4 95 112-263 272-367 (561)
270 TIGR01438 TGR thioredoxin and 96.6 0.024 5.3E-07 63.1 13.3 96 112-263 182-281 (484)
271 PRK09564 coenzyme A disulfide 96.6 0.025 5.4E-07 62.0 12.9 102 111-267 150-254 (444)
272 TIGR03452 mycothione_red mycot 96.6 0.031 6.8E-07 61.7 13.7 97 111-263 170-267 (452)
273 PRK12770 putative glutamate sy 96.5 0.011 2.4E-07 62.9 9.4 36 110-145 18-54 (352)
274 PRK13512 coenzyme A disulfide 96.5 0.019 4E-07 63.1 11.4 92 112-262 150-242 (438)
275 TIGR00562 proto_IX_ox protopor 96.4 0.003 6.4E-08 69.5 4.7 41 220-260 238-278 (462)
276 PRK14989 nitrite reductase sub 96.4 0.016 3.4E-07 68.9 10.8 104 112-261 5-113 (847)
277 COG2303 BetA Choline dehydroge 96.4 0.0029 6.3E-08 71.4 4.3 35 108-142 5-40 (542)
278 PRK05329 anaerobic glycerol-3- 96.3 0.0046 9.9E-08 67.6 4.9 55 206-260 260-317 (422)
279 TIGR03197 MnmC_Cterm tRNA U-34 96.3 0.0099 2.2E-07 63.8 7.4 62 200-262 130-191 (381)
280 PRK06467 dihydrolipoamide dehy 96.3 0.041 8.8E-07 61.1 12.5 97 112-264 176-277 (471)
281 PTZ00058 glutathione reductase 96.3 0.05 1.1E-06 61.7 13.3 98 112-264 239-339 (561)
282 TIGR03862 flavo_PP4765 unchara 96.2 0.019 4.2E-07 61.7 9.4 66 203-270 84-161 (376)
283 TIGR03315 Se_ygfK putative sel 96.2 0.0052 1.1E-07 73.4 5.5 36 110-145 537-573 (1012)
284 COG1148 HdrA Heterodisulfide r 96.2 0.0051 1.1E-07 66.6 4.5 36 110-145 124-160 (622)
285 PLN02268 probable polyamine ox 96.2 0.0052 1.1E-07 67.2 4.8 40 218-257 209-248 (435)
286 COG3075 GlpB Anaerobic glycero 96.2 0.0053 1.2E-07 63.6 4.4 33 110-142 2-35 (421)
287 KOG1238 Glucose dehydrogenase/ 96.1 0.0059 1.3E-07 68.5 4.9 38 107-144 54-93 (623)
288 COG3486 IucD Lysine/ornithine 96.1 0.021 4.6E-07 60.9 8.7 144 109-265 4-161 (436)
289 PTZ00318 NADH dehydrogenase-li 96.1 0.054 1.2E-06 59.2 12.3 51 207-261 230-280 (424)
290 KOG0029 Amine oxidase [Seconda 96.1 0.0065 1.4E-07 67.8 5.0 36 110-145 15-51 (501)
291 COG3573 Predicted oxidoreducta 96.1 0.0062 1.3E-07 63.1 4.4 34 110-143 5-39 (552)
292 TIGR01316 gltA glutamate synth 96.0 0.029 6.3E-07 61.9 9.4 36 110-145 133-169 (449)
293 TIGR01810 betA choline dehydro 96.0 0.006 1.3E-07 68.7 4.1 32 112-143 1-34 (532)
294 PF00996 GDI: GDP dissociation 96.0 0.0088 1.9E-07 65.4 5.1 51 207-257 234-285 (438)
295 PLN02676 polyamine oxidase 95.9 0.0084 1.8E-07 66.8 5.1 55 206-260 225-285 (487)
296 PLN02785 Protein HOTHEAD 95.9 0.0077 1.7E-07 68.6 4.7 35 108-143 53-88 (587)
297 PRK12810 gltD glutamate syntha 95.9 0.018 3.9E-07 63.9 7.5 36 110-145 143-179 (471)
298 COG3349 Uncharacterized conser 95.9 0.0078 1.7E-07 66.1 4.4 34 112-145 2-36 (485)
299 PLN02546 glutathione reductase 95.9 0.082 1.8E-06 60.0 12.7 98 112-264 254-353 (558)
300 KOG0405 Pyridine nucleotide-di 95.8 0.064 1.4E-06 56.2 10.4 129 108-264 18-168 (478)
301 PRK12769 putative oxidoreducta 95.8 0.015 3.3E-07 67.2 6.5 36 110-145 327-363 (654)
302 TIGR03378 glycerol3P_GlpB glyc 95.8 0.013 2.8E-07 63.7 5.4 62 206-267 264-330 (419)
303 PTZ00153 lipoamide dehydrogena 95.8 0.11 2.4E-06 60.0 13.2 97 112-263 314-429 (659)
304 TIGR01318 gltD_gamma_fam gluta 95.7 0.022 4.8E-07 63.2 7.0 36 110-145 141-177 (467)
305 TIGR02731 phytoene_desat phyto 95.7 0.012 2.6E-07 64.7 4.9 55 207-261 215-276 (453)
306 PRK06292 dihydrolipoamide dehy 95.7 0.15 3.2E-06 56.3 13.4 97 112-264 171-271 (460)
307 KOG2852 Possible oxidoreductas 95.7 0.067 1.4E-06 54.8 9.6 63 201-263 143-210 (380)
308 PLN02568 polyamine oxidase 95.6 0.014 2.9E-07 66.0 5.2 50 207-258 244-293 (539)
309 KOG2960 Protein involved in th 95.5 0.03 6.4E-07 54.8 6.3 35 111-145 77-114 (328)
310 PLN02852 ferredoxin-NADP+ redu 95.5 0.022 4.8E-07 63.4 6.2 36 110-145 26-64 (491)
311 TIGR02732 zeta_caro_desat caro 95.5 0.014 3.1E-07 64.8 4.6 54 207-260 221-283 (474)
312 PRK12814 putative NADPH-depend 95.5 0.032 6.9E-07 64.5 7.5 36 110-145 193-229 (652)
313 PRK10262 thioredoxin reductase 95.4 0.12 2.7E-06 54.0 11.2 93 112-261 148-248 (321)
314 KOG3851 Sulfide:quinone oxidor 95.4 0.041 8.9E-07 57.0 7.1 111 107-265 36-149 (446)
315 KOG0404 Thioredoxin reductase 95.4 0.092 2E-06 51.9 9.2 116 110-261 8-124 (322)
316 COG1252 Ndh NADH dehydrogenase 95.4 0.059 1.3E-06 58.4 8.7 105 111-261 4-111 (405)
317 COG1252 Ndh NADH dehydrogenase 95.3 0.065 1.4E-06 58.1 8.7 58 206-267 210-269 (405)
318 PRK12771 putative glutamate sy 95.3 0.035 7.6E-07 63.1 7.0 36 110-145 137-173 (564)
319 PRK12809 putative oxidoreducta 95.3 0.03 6.5E-07 64.6 6.5 36 110-145 310-346 (639)
320 KOG4254 Phytoene desaturase [C 95.2 0.015 3.2E-07 62.6 3.4 60 207-266 266-326 (561)
321 KOG4716 Thioredoxin reductase 95.2 0.024 5.2E-07 59.0 4.6 34 108-141 17-51 (503)
322 COG4529 Uncharacterized protei 95.1 0.2 4.3E-06 54.9 11.6 46 221-266 122-169 (474)
323 PLN02529 lysine-specific histo 95.1 0.027 5.8E-07 65.6 5.3 38 219-257 366-403 (738)
324 KOG1336 Monodehydroascorbate/f 95.1 0.16 3.5E-06 55.3 10.8 96 113-262 216-314 (478)
325 TIGR03140 AhpF alkyl hydropero 95.0 0.22 4.7E-06 56.0 12.1 89 112-261 354-450 (515)
326 PLN02328 lysine-specific histo 94.7 0.039 8.5E-07 64.7 5.3 37 109-145 237-274 (808)
327 PRK13984 putative oxidoreducta 94.7 0.072 1.6E-06 61.0 7.5 36 110-145 283-319 (604)
328 PRK05675 sdhA succinate dehydr 94.7 0.37 8E-06 54.9 13.1 59 205-263 126-191 (570)
329 PLN02487 zeta-carotene desatur 94.5 0.039 8.5E-07 62.6 4.7 54 207-260 297-359 (569)
330 TIGR03377 glycerol3P_GlpA glyc 94.5 0.14 3.1E-06 57.4 9.1 69 200-268 123-198 (516)
331 PRK06567 putative bifunctional 94.5 0.045 9.8E-07 65.0 5.1 33 110-142 383-416 (1028)
332 TIGR03378 glycerol3P_GlpB glyc 94.4 0.18 3.8E-06 55.0 9.2 25 387-412 382-406 (419)
333 COG1206 Gid NAD(FAD)-utilizing 94.4 0.14 3E-06 53.4 7.8 110 111-231 4-126 (439)
334 PF01593 Amino_oxidase: Flavin 94.3 0.37 7.9E-06 51.1 11.4 52 210-261 214-265 (450)
335 TIGR01292 TRX_reduct thioredox 94.2 0.53 1.1E-05 48.0 11.9 90 111-261 142-238 (300)
336 PRK13977 myosin-cross-reactive 94.1 0.059 1.3E-06 60.8 4.9 55 206-260 227-292 (576)
337 TIGR01317 GOGAT_sm_gam glutama 93.9 0.078 1.7E-06 59.2 5.4 35 110-144 143-178 (485)
338 COG1232 HemY Protoporphyrinoge 93.9 0.062 1.3E-06 59.0 4.4 58 207-268 217-274 (444)
339 PLN02976 amine oxidase 93.8 0.072 1.6E-06 65.3 5.2 38 107-144 690-728 (1713)
340 KOG2404 Fumarate reductase, fl 93.8 0.65 1.4E-05 48.5 11.3 56 207-262 145-207 (477)
341 TIGR03169 Nterm_to_SelD pyridi 93.6 0.63 1.4E-05 49.5 11.6 49 209-261 195-243 (364)
342 PRK11749 dihydropyrimidine deh 93.6 0.59 1.3E-05 51.6 11.7 32 111-142 274-307 (457)
343 COG0493 GltD NADPH-dependent g 93.6 0.1 2.2E-06 57.7 5.4 54 111-164 124-187 (457)
344 PF13434 K_oxygenase: L-lysine 93.6 0.43 9.3E-06 50.8 10.1 130 110-259 190-339 (341)
345 TIGR01316 gltA glutamate synth 93.5 0.67 1.5E-05 51.1 11.9 31 112-142 274-305 (449)
346 PRK05329 anaerobic glycerol-3- 93.3 0.62 1.3E-05 51.0 10.9 34 110-143 216-254 (422)
347 PTZ00188 adrenodoxin reductase 93.1 0.13 2.8E-06 57.1 5.3 36 110-145 39-76 (506)
348 PRK12810 gltD glutamate syntha 92.9 0.75 1.6E-05 51.1 11.1 31 112-142 283-315 (471)
349 PRK15317 alkyl hydroperoxide r 92.9 0.85 1.8E-05 51.3 11.6 89 112-261 353-449 (517)
350 PLN03000 amine oxidase 92.3 0.17 3.6E-06 59.8 5.1 36 110-145 184-220 (881)
351 PRK12770 putative glutamate sy 92.3 0.99 2.1E-05 48.0 10.7 31 112-142 174-206 (352)
352 KOG4405 GDP dissociation inhib 92.2 0.16 3.6E-06 54.2 4.4 38 109-146 7-45 (547)
353 PRK12831 putative oxidoreducta 92.1 1.4 2.9E-05 49.0 11.9 32 111-142 282-314 (464)
354 TIGR02730 carot_isom carotene 92.1 0.51 1.1E-05 52.6 8.6 35 111-145 1-36 (493)
355 COG5044 MRS6 RAB proteins gera 91.7 0.23 5.1E-06 52.5 4.8 36 110-145 6-42 (434)
356 KOG1276 Protoporphyrinogen oxi 91.7 0.17 3.6E-06 54.6 3.8 34 110-143 11-47 (491)
357 TIGR00562 proto_IX_ox protopor 91.6 24 0.00052 38.6 22.2 36 110-145 2-42 (462)
358 PF02558 ApbA: Ketopantoate re 91.5 0.27 5.8E-06 45.3 4.6 30 113-142 1-31 (151)
359 TIGR01372 soxA sarcosine oxida 91.3 1.5 3.3E-05 53.3 12.0 95 112-269 319-421 (985)
360 COG1251 NirB NAD(P)H-nitrite r 90.9 0.51 1.1E-05 54.2 6.7 102 113-268 148-252 (793)
361 PF01210 NAD_Gly3P_dh_N: NAD-d 90.8 0.29 6.2E-06 46.0 4.2 30 113-142 2-32 (157)
362 KOG1439 RAB proteins geranylge 90.8 0.13 2.7E-06 55.0 1.8 36 110-145 4-40 (440)
363 TIGR02734 crtI_fam phytoene de 90.1 1.2 2.6E-05 49.6 9.0 33 113-145 1-34 (502)
364 PF02737 3HCDH_N: 3-hydroxyacy 89.8 0.39 8.5E-06 46.2 4.2 30 113-142 2-32 (180)
365 PRK12778 putative bifunctional 89.4 2.7 5.8E-05 49.6 11.6 32 111-142 571-604 (752)
366 TIGR02354 thiF_fam2 thiamine b 88.9 0.55 1.2E-05 46.1 4.6 33 110-142 21-55 (200)
367 PRK02705 murD UDP-N-acetylmura 88.9 0.49 1.1E-05 52.2 4.7 32 113-144 3-35 (459)
368 KOG1335 Dihydrolipoamide dehyd 88.8 2.3 4.9E-05 45.6 9.2 100 112-267 213-319 (506)
369 PF03721 UDPG_MGDP_dh_N: UDP-g 88.8 0.39 8.4E-06 46.5 3.4 31 112-142 2-33 (185)
370 COG1087 GalE UDP-glucose 4-epi 88.4 0.58 1.2E-05 48.5 4.4 31 112-142 2-34 (329)
371 PRK05708 2-dehydropantoate 2-r 88.2 0.57 1.2E-05 49.0 4.5 32 111-142 3-35 (305)
372 PRK12814 putative NADPH-depend 87.7 4.5 9.7E-05 47.0 11.7 32 111-142 324-357 (652)
373 PRK13230 nitrogenase reductase 87.3 0.51 1.1E-05 48.4 3.4 32 113-144 4-41 (279)
374 PRK07688 thiamine/molybdopteri 86.8 0.79 1.7E-05 48.7 4.5 32 111-142 25-58 (339)
375 PLN02976 amine oxidase 86.7 53 0.0011 41.6 20.0 37 221-257 947-993 (1713)
376 PRK12475 thiamine/molybdopteri 86.7 0.82 1.8E-05 48.6 4.6 33 111-143 25-59 (338)
377 TIGR02356 adenyl_thiF thiazole 86.6 0.9 2E-05 44.6 4.5 33 110-142 21-55 (202)
378 cd01483 E1_enzyme_family Super 86.4 1 2.3E-05 41.2 4.6 30 113-142 2-33 (143)
379 PRK06249 2-dehydropantoate 2-r 86.2 0.97 2.1E-05 47.3 4.8 32 111-142 6-38 (313)
380 COG1179 Dinucleotide-utilizing 86.1 1.3 2.8E-05 44.6 5.2 33 111-143 31-65 (263)
381 PRK01438 murD UDP-N-acetylmura 86.1 0.86 1.9E-05 50.6 4.6 31 112-142 18-49 (480)
382 cd01487 E1_ThiF_like E1_ThiF_l 85.8 1 2.3E-05 43.1 4.4 30 113-142 2-33 (174)
383 PF01488 Shikimate_DH: Shikima 85.7 1.2 2.5E-05 40.8 4.5 33 110-142 12-46 (135)
384 TIGR01350 lipoamide_DH dihydro 85.5 1.3 2.7E-05 48.9 5.5 34 111-144 171-205 (461)
385 COG0569 TrkA K+ transport syst 85.5 0.91 2E-05 45.4 4.0 32 112-143 2-34 (225)
386 TIGR02732 zeta_caro_desat caro 85.4 56 0.0012 36.3 18.5 34 112-145 1-35 (474)
387 PRK06129 3-hydroxyacyl-CoA deh 85.2 0.95 2.1E-05 47.3 4.2 31 112-142 4-35 (308)
388 PF00899 ThiF: ThiF family; I 85.2 1 2.3E-05 40.8 4.0 33 111-143 3-37 (135)
389 PRK13232 nifH nitrogenase redu 84.9 0.79 1.7E-05 46.9 3.4 32 113-144 4-41 (273)
390 PRK06522 2-dehydropantoate 2-r 84.8 1.1 2.4E-05 46.3 4.3 31 112-142 2-33 (304)
391 KOG1336 Monodehydroascorbate/f 84.5 3.5 7.6E-05 45.3 8.1 42 216-259 138-179 (478)
392 COG1233 Phytoene dehydrogenase 84.5 2.4 5.3E-05 47.3 7.2 36 110-145 3-39 (487)
393 PLN02676 polyamine oxidase 84.1 2.5 5.5E-05 47.2 7.1 35 110-144 26-62 (487)
394 PRK12921 2-dehydropantoate 2-r 84.0 1.2 2.5E-05 46.1 4.2 29 112-140 2-31 (305)
395 PRK12769 putative oxidoreducta 83.7 9.5 0.00021 44.2 11.9 32 111-142 469-502 (654)
396 TIGR03467 HpnE squalene-associ 83.6 2.7 5.9E-05 45.0 7.0 55 206-260 198-253 (419)
397 PRK07819 3-hydroxybutyryl-CoA 83.5 1.2 2.7E-05 46.0 4.1 32 112-143 7-39 (286)
398 PRK07066 3-hydroxybutyryl-CoA 83.4 1.3 2.9E-05 46.7 4.3 31 112-142 9-40 (321)
399 PRK15116 sulfur acceptor prote 83.3 1.5 3.3E-05 45.0 4.5 33 110-142 30-64 (268)
400 PF01593 Amino_oxidase: Flavin 83.2 1.2 2.5E-05 47.2 3.9 26 120-145 2-27 (450)
401 TIGR01318 gltD_gamma_fam gluta 83.1 11 0.00024 41.8 11.7 32 111-142 283-316 (467)
402 PRK13235 nifH nitrogenase redu 82.8 1.2 2.6E-05 45.5 3.7 32 113-144 4-41 (274)
403 PF02254 TrkA_N: TrkA-N domain 82.8 1.7 3.7E-05 37.9 4.2 30 113-142 1-31 (116)
404 PRK06718 precorrin-2 dehydroge 82.8 1.6 3.6E-05 42.8 4.4 31 111-141 11-42 (202)
405 PRK04148 hypothetical protein; 82.7 1.1 2.5E-05 41.0 3.1 32 111-142 18-49 (134)
406 TIGR02355 moeB molybdopterin s 82.7 1.7 3.6E-05 44.0 4.6 33 110-142 24-58 (240)
407 PRK06719 precorrin-2 dehydroge 82.7 1.7 3.8E-05 40.9 4.4 30 111-140 14-44 (157)
408 PRK08293 3-hydroxybutyryl-CoA 82.7 1.5 3.2E-05 45.3 4.3 31 112-142 5-36 (287)
409 TIGR01281 DPOR_bchL light-inde 82.6 1.1 2.4E-05 45.6 3.3 31 113-143 3-39 (268)
410 KOG1346 Programmed cell death 82.5 1.5 3.3E-05 47.2 4.3 63 203-265 391-455 (659)
411 cd02032 Bchl_like This family 82.4 1.2 2.6E-05 45.3 3.5 31 113-143 3-39 (267)
412 cd02040 NifH NifH gene encodes 82.4 1.1 2.4E-05 45.4 3.2 31 113-143 4-40 (270)
413 PRK08644 thiamine biosynthesis 82.3 1.8 3.8E-05 42.9 4.4 33 110-142 28-62 (212)
414 TIGR01287 nifH nitrogenase iro 82.3 1.5 3.1E-05 44.9 4.0 32 113-144 3-40 (275)
415 PRK09260 3-hydroxybutyryl-CoA 82.3 1.5 3.2E-05 45.4 4.0 31 112-142 3-34 (288)
416 cd02117 NifH_like This family 81.8 1.6 3.4E-05 42.9 3.9 32 113-144 3-40 (212)
417 PRK12549 shikimate 5-dehydroge 81.6 1.9 4.1E-05 44.7 4.6 32 111-142 128-161 (284)
418 KOG0399 Glutamate synthase [Am 81.5 1.7 3.6E-05 52.1 4.4 36 111-146 1786-1822(2142)
419 PRK08328 hypothetical protein; 81.4 2 4.4E-05 43.1 4.6 33 110-142 27-61 (231)
420 PRK06035 3-hydroxyacyl-CoA deh 81.4 1.7 3.7E-05 45.0 4.2 31 112-142 5-36 (291)
421 PRK07530 3-hydroxybutyryl-CoA 81.3 1.7 3.7E-05 44.9 4.1 31 112-142 6-37 (292)
422 PRK14106 murD UDP-N-acetylmura 81.3 1.8 4E-05 47.5 4.6 32 111-142 6-38 (450)
423 TIGR03736 PRTRC_ThiF PRTRC sys 81.2 2.1 4.6E-05 43.3 4.6 33 110-142 11-55 (244)
424 TIGR01470 cysG_Nterm siroheme 80.9 2.2 4.8E-05 42.0 4.5 31 112-142 11-42 (205)
425 TIGR03385 CoA_CoA_reduc CoA-di 80.8 6.1 0.00013 43.0 8.5 46 216-261 55-103 (427)
426 PRK08223 hypothetical protein; 80.7 2.1 4.6E-05 44.3 4.5 32 111-142 28-61 (287)
427 KOG1014 17 beta-hydroxysteroid 80.7 1.8 3.9E-05 45.0 3.9 30 113-142 52-83 (312)
428 PLN02487 zeta-carotene desatur 80.6 1.1E+02 0.0025 34.9 20.7 36 110-145 75-111 (569)
429 PRK12548 shikimate 5-dehydroge 80.6 2.1 4.5E-05 44.4 4.5 32 111-142 127-160 (289)
430 KOG1800 Ferredoxin/adrenodoxin 80.6 2 4.4E-05 45.9 4.3 35 111-145 21-58 (468)
431 PRK13236 nitrogenase reductase 80.4 1.4 3E-05 45.9 3.2 33 113-145 9-47 (296)
432 CHL00072 chlL photochlorophyll 80.4 1.5 3.2E-05 45.6 3.3 32 113-144 3-40 (290)
433 cd00757 ThiF_MoeB_HesA_family 80.4 2.3 5.1E-05 42.4 4.6 32 111-142 22-55 (228)
434 TIGR02733 desat_CrtD C-3',4' d 80.3 5.6 0.00012 44.2 8.1 35 111-145 2-37 (492)
435 PRK08229 2-dehydropantoate 2-r 80.1 2 4.3E-05 45.3 4.2 30 112-141 4-34 (341)
436 PLN02780 ketoreductase/ oxidor 79.7 1.9 4.2E-05 45.3 4.0 31 112-142 55-87 (320)
437 PRK13185 chlL protochlorophyll 79.7 1.7 3.6E-05 44.3 3.4 31 113-143 5-41 (270)
438 PRK05690 molybdopterin biosynt 79.6 2.5 5.4E-05 42.8 4.6 33 110-142 32-66 (245)
439 PRK13984 putative oxidoreducta 79.6 18 0.00038 41.5 12.1 28 111-138 419-453 (604)
440 PRK13234 nifH nitrogenase redu 79.6 1.8 3.9E-05 45.1 3.6 29 115-143 9-43 (295)
441 cd00755 YgdL_like Family of ac 79.5 2.5 5.5E-05 42.4 4.5 32 111-142 12-45 (231)
442 PRK08177 short chain dehydroge 79.4 2.5 5.5E-05 41.4 4.5 30 113-142 4-35 (225)
443 PRK06483 dihydromonapterin red 79.4 2.6 5.6E-05 41.5 4.6 31 112-142 4-36 (236)
444 PF00670 AdoHcyase_NAD: S-aden 79.2 2.4 5.3E-05 40.1 4.0 31 112-142 25-56 (162)
445 TIGR03325 BphB_TodD cis-2,3-di 79.1 2.5 5.4E-05 42.5 4.5 31 112-142 7-39 (262)
446 PRK08862 short chain dehydroge 79.0 2.5 5.5E-05 41.9 4.4 31 112-142 7-39 (227)
447 PRK08339 short chain dehydroge 78.9 2.5 5.4E-05 42.7 4.4 31 112-142 10-42 (263)
448 PRK05808 3-hydroxybutyryl-CoA 78.9 2.2 4.8E-05 43.9 4.0 31 112-142 5-36 (282)
449 PRK08340 glucose-1-dehydrogena 78.8 2.4 5.3E-05 42.5 4.2 30 113-142 3-34 (259)
450 PRK08303 short chain dehydroge 78.7 2.5 5.4E-05 44.0 4.4 31 112-142 10-42 (305)
451 PRK06101 short chain dehydroge 78.7 2.6 5.7E-05 41.8 4.4 30 113-142 4-35 (240)
452 PRK07890 short chain dehydroge 78.7 2.4 5.2E-05 42.2 4.1 31 112-142 7-39 (258)
453 PRK07067 sorbitol dehydrogenas 78.6 2.5 5.5E-05 42.2 4.3 31 112-142 8-40 (257)
454 PRK08265 short chain dehydroge 78.3 2.6 5.7E-05 42.4 4.3 31 112-142 8-40 (261)
455 PRK07063 short chain dehydroge 78.0 2.7 5.9E-05 42.1 4.3 31 112-142 9-41 (260)
456 PRK06153 hypothetical protein; 77.9 2.5 5.4E-05 45.5 4.1 33 111-143 177-211 (393)
457 TIGR03315 Se_ygfK putative sel 77.9 17 0.00037 44.3 11.5 32 111-142 667-701 (1012)
458 PRK09853 putative selenate red 77.9 15 0.00033 44.6 11.0 31 112-142 670-703 (1019)
459 PRK06171 sorbitol-6-phosphate 77.8 2.9 6.3E-05 42.0 4.5 32 112-143 11-44 (266)
460 PF13738 Pyr_redox_3: Pyridine 77.5 2.5 5.4E-05 40.5 3.7 32 111-142 168-200 (203)
461 PRK06057 short chain dehydroge 77.5 2.9 6.2E-05 41.8 4.3 31 112-142 9-41 (255)
462 PRK06924 short chain dehydroge 77.5 3 6.5E-05 41.4 4.5 31 112-142 3-35 (251)
463 PRK05866 short chain dehydroge 77.5 2.9 6.3E-05 43.2 4.5 31 112-142 42-74 (293)
464 KOG4254 Phytoene desaturase [C 77.4 3.5 7.5E-05 45.1 5.0 35 108-142 12-47 (561)
465 PRK12481 2-deoxy-D-gluconate 3 77.3 3 6.6E-05 41.7 4.4 30 112-141 10-41 (251)
466 TIGR00518 alaDH alanine dehydr 77.2 2.7 5.9E-05 45.2 4.3 32 111-142 168-200 (370)
467 PRK07024 short chain dehydroge 77.2 3.1 6.7E-05 41.6 4.5 31 112-142 4-36 (257)
468 cd00401 AdoHcyase S-adenosyl-L 77.2 2.9 6.3E-05 45.7 4.5 32 111-142 203-235 (413)
469 PLN02918 pyridoxine (pyridoxam 77.2 2.4 5.1E-05 47.8 3.8 117 10-139 28-169 (544)
470 PRK03803 murD UDP-N-acetylmura 77.1 2.9 6.2E-05 46.0 4.5 32 111-142 7-39 (448)
471 PRK10538 malonic semialdehyde 77.1 2.9 6.4E-05 41.6 4.2 30 113-142 3-34 (248)
472 COG2907 Predicted NAD/FAD-bind 77.0 2.4 5.2E-05 44.9 3.6 34 110-144 8-42 (447)
473 PRK05854 short chain dehydroge 77.0 3 6.6E-05 43.5 4.5 31 112-142 16-48 (313)
474 PRK08085 gluconate 5-dehydroge 77.0 3.1 6.7E-05 41.5 4.4 31 112-142 11-43 (254)
475 PRK06720 hypothetical protein; 77.0 3.4 7.5E-05 39.3 4.4 32 111-142 17-50 (169)
476 KOG0685 Flavin-containing amin 76.8 3.1 6.6E-05 45.7 4.4 34 222-255 246-280 (498)
477 PRK06130 3-hydroxybutyryl-CoA 76.7 2.9 6.3E-05 43.5 4.3 32 111-142 5-37 (311)
478 PRK06179 short chain dehydroge 76.7 3.1 6.8E-05 41.8 4.4 31 112-142 6-38 (270)
479 COG0300 DltE Short-chain dehyd 76.7 3.3 7.1E-05 42.5 4.4 32 111-142 7-40 (265)
480 PRK07102 short chain dehydroge 76.6 3.1 6.7E-05 41.2 4.2 30 113-142 4-35 (243)
481 cd01075 NAD_bind_Leu_Phe_Val_D 76.6 3.7 7.9E-05 40.2 4.6 31 112-142 30-61 (200)
482 PRK08267 short chain dehydroge 76.6 3.1 6.6E-05 41.7 4.2 30 113-142 4-35 (260)
483 PRK07326 short chain dehydroge 76.5 3.1 6.6E-05 40.9 4.1 31 112-142 8-40 (237)
484 PRK08017 oxidoreductase; Provi 76.5 3.1 6.8E-05 41.3 4.3 31 112-142 4-36 (256)
485 PRK07023 short chain dehydroge 76.4 3.2 7E-05 41.0 4.3 31 112-142 3-35 (243)
486 PRK06398 aldose dehydrogenase; 76.4 3.4 7.4E-05 41.5 4.5 32 112-143 8-41 (258)
487 KOG2495 NADH-dehydrogenase (ub 76.3 14 0.00029 40.4 9.0 60 206-267 274-336 (491)
488 KOG2018 Predicted dinucleotide 76.3 3.5 7.6E-05 42.9 4.4 51 112-166 76-128 (430)
489 PRK08643 acetoin reductase; Va 76.3 3.2 7E-05 41.4 4.3 31 112-142 4-36 (256)
490 PRK02472 murD UDP-N-acetylmura 76.3 3.2 6.9E-05 45.5 4.6 31 112-142 7-38 (447)
491 PRK12384 sorbitol-6-phosphate 76.2 3.3 7.1E-05 41.4 4.3 30 113-142 5-36 (259)
492 PRK06114 short chain dehydroge 76.2 3.6 7.7E-05 41.1 4.6 31 112-142 10-42 (254)
493 TIGR01832 kduD 2-deoxy-D-gluco 76.1 3.5 7.5E-05 40.8 4.5 31 112-142 7-39 (248)
494 PRK06200 2,3-dihydroxy-2,3-dih 76.1 3.2 7E-05 41.6 4.3 31 112-142 8-40 (263)
495 PRK07035 short chain dehydroge 75.9 3.4 7.3E-05 41.1 4.3 31 112-142 10-42 (252)
496 PRK07231 fabG 3-ketoacyl-(acyl 75.9 3.3 7.1E-05 40.9 4.2 31 112-142 7-39 (251)
497 PRK05597 molybdopterin biosynt 75.9 3.3 7.2E-05 44.3 4.5 32 111-142 29-62 (355)
498 PRK00094 gpsA NAD(P)H-dependen 75.9 3.1 6.7E-05 43.4 4.2 31 112-142 3-34 (325)
499 TIGR02731 phytoene_desat phyto 75.9 7.7 0.00017 42.6 7.5 34 112-145 1-35 (453)
500 COG1748 LYS9 Saccharopine dehy 75.9 3.3 7.1E-05 44.8 4.3 31 112-142 3-35 (389)
No 1
>PLN02463 lycopene beta cyclase
Probab=100.00 E-value=1.7e-39 Score=353.31 Aligned_cols=397 Identities=16% Similarity=0.139 Sum_probs=270.1
Q ss_pred CCCccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeee
Q 007945 108 VGTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF 186 (584)
Q Consensus 108 ~~~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f 186 (584)
...|||+|||| ++|+++|+.|+++|++|+|||+++....++.|.+|.. .+.++|+. +++.+.|....+.+
T Consensus 26 ~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~---~l~~lgl~------~~l~~~w~~~~v~~ 96 (447)
T PLN02463 26 SRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVD---EFEALGLL------DCLDTTWPGAVVYI 96 (447)
T ss_pred ccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHH---HHHHCCcH------HHHHhhCCCcEEEE
Confidence 34699999995 5799999999999999999999876554555666654 45555643 33444555444444
Q ss_pred cCCCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChHHHhH
Q 007945 187 EGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQ 266 (584)
Q Consensus 187 ~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~v~rq 266 (584)
...........+ ..|++..|++.|.+++.+.|+++. .++|++++.+++++.|++++|++++|++||+|||++|++.+.
T Consensus 97 ~~~~~~~~~~~y-~~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s~l~~~ 174 (447)
T PLN02463 97 DDGKKKDLDRPY-GRVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSRCLVQY 174 (447)
T ss_pred eCCCCccccCcc-eeEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCcCccCC
Confidence 332211111222 248999999999999998899886 579999998888899999899899999999999999987742
Q ss_pred hcCCCCCCceeeEEEEeee----ccCCCcceeEEccCCcccc--------cCCCCceEEEEEccCCCCCCcc-EEEEEEc
Q 007945 267 IRSGRKPDGVCLVVGSCAR----GFKDNSTSDVIYSSSSVKK--------VGDSEVQLFWEAFPAGSGPLDR-TTYMFTY 333 (584)
Q Consensus 267 l~~~~~~~~~~~~vg~~a~----g~~~~~~~di~~~~~~~~~--------~~~~~~~~~W~~fP~~~g~~~~-~~~L~~~ 333 (584)
..... .......|...+ .++ .+ ..++.++..... .......|.| ++|.+++.... .+.++..
T Consensus 175 -~~~~~-~g~Q~a~Gi~~ev~~~p~d-~~-~~vlMD~r~~~~~~~~~~~~~~~~~p~FlY-~~P~~~~~~~vEeT~l~s~ 249 (447)
T PLN02463 175 -DKPFN-PGYQVAYGILAEVDSHPFD-LD-KMLFMDWRDSHLGNNPELRARNSKLPTFLY-AMPFSSNRIFLEETSLVAR 249 (447)
T ss_pred -CCCCC-ccceeeeeEEeecCCCCcc-cc-cchhhhcChhhccccchhhhccCCCCceEE-EEecCCCeEEEEeeeeecC
Confidence 11111 111111222221 111 00 011111111000 0000135778 79988652000 0111111
Q ss_pred cCCCCCCccHHHHHHHHHhhCcccccccCCceeEEEEEeeeeccccCCCCCccCCCEEEeCCCCCCcCCCCCCchhhHHH
Q 007945 334 IDPQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTR 413 (584)
Q Consensus 334 ~~~~~~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLvGDAA~~v~PltGgG~g~~lr 413 (584)
. ......+++.+.++++.+ + +...++.+.++|.||+.. +.+...+|+++|||||+++||.||+||..+++
T Consensus 250 ~--~~~~~~lk~~L~~~l~~~----G--i~~~~i~~~E~~~IPmg~--~~~~~~~~~~~~G~aag~v~p~tG~~i~~~~~ 319 (447)
T PLN02463 250 P--GLPMDDIQERMVARLRHL----G--IKVKSVEEDEKCVIPMGG--PLPVIPQRVLGIGGTAGMVHPSTGYMVARTLA 319 (447)
T ss_pred C--CCCHHHHHHHHHHHHHHC----C--CCcceeeeeeeeEeeCCC--CCCCCCCCEEEecchhcCcCCCccccHHHHHH
Confidence 0 001124555555555433 2 223345677889999963 44456789999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCC--------ChhhhHhhhchhhhhhHHHHHHHHhhccccCCCChHHHHHHHHHHHHHHHhcCC
Q 007945 414 HLGRLSTGVYEAVRGDFV--------DSYSLSLLNPYMPNLSASWLFQRAMSAKQQSDVSPDFINELLYVNFQCMQKLGD 485 (584)
Q Consensus 414 ~~~~La~~i~~AL~~~~l--------s~~~l~~L~~Ye~~~~~~~~l~k~m~~~~~~~~~~~~in~ll~~~f~~~~~lp~ 485 (584)
.+..+|+.|+++++++.. +...++.|++|++.. +...++.+|..-...+ -+.++.||.+||+||+
T Consensus 320 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~lw~~~~~~-~~~~~~fg~~~l~~~~------~~~~~~ff~~ff~l~~ 392 (447)
T PLN02463 320 AAPIVADAIVEYLGSSRSNSFRGDELSAEVWNDLWPIERRR-QREFFCFGMDILLKLD------LDGTRRFFDAFFDLEP 392 (447)
T ss_pred HHHHHHHHHHHHHhcCCCcCCChHHHHHHHHHHhCCHhHhH-hHHHHHhHHHHHHcCC------hHHHHHHHHHHHcCCH
Confidence 999999999999997655 234455677777653 3333444444433211 1278999999999999
Q ss_pred cccccccccccchhHHHHHHHHHHHhCCCChHHHHhhcCcchhhhhhHHHHH
Q 007945 486 PVLRPFLQDVIKFGPLAKTLGLVMLNKPQIIPSIFKQVGIPVLVDWSGHFFM 537 (584)
Q Consensus 486 ~~~~~fl~d~~~~~~l~~~~~~~~~~~P~~~~~~~~~~g~~~~~~~~~~~~~ 537 (584)
++|++||++++++.+|+.+|+++|.++|+-+++.+...|+++++.++.+|+.
T Consensus 393 ~~~~gfl~~~~~~~~l~~~~~~~f~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 444 (447)
T PLN02463 393 HYWHGFLSSRLFLPELLLFGLSLFSHASNTSRLEIMAKGTVPLVKMINNLIQ 444 (447)
T ss_pred HHccccccCCCChHHHHHHHHHHHHhCCHHHHHHHHHcCChhHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999875
No 2
>PLN02697 lycopene epsilon cyclase
Probab=100.00 E-value=3.1e-36 Score=332.69 Aligned_cols=395 Identities=15% Similarity=0.165 Sum_probs=262.6
Q ss_pred CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecC
Q 007945 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG 188 (584)
Q Consensus 110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~ 188 (584)
.|||||||| ++|+++|+.|++.|++|+|||+.... ...|++|..+ +.++|+ ++++.+.|+...+.+.+
T Consensus 108 ~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~--~~n~GvW~~~---l~~lgl------~~~i~~~w~~~~v~~~~ 176 (529)
T PLN02697 108 TLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPF--TNNYGVWEDE---FKDLGL------EDCIEHVWRDTIVYLDD 176 (529)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccC--CCccccchhH---HHhcCc------HHHHHhhcCCcEEEecC
Confidence 699999995 57999999999999999999986432 2346777644 445553 33455566655555543
Q ss_pred CCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEEcCCcEEEccEEEEecCCChH-HHhH
Q 007945 189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLAEGKILSSHLIIDAMGNFSP-VVKQ 266 (584)
Q Consensus 189 ~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~-V~~~~G~~i~ArlVIdADG~~S~-v~rq 266 (584)
+..+.....+ ..|++..|++.|.+++.+.|+++ .+++|+++..+++++. +.+.+|.+++|++||+|||++|. ...
T Consensus 177 ~~~~~~~~~Y-g~V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S~rl~~- 253 (529)
T PLN02697 177 DKPIMIGRAY-GRVSRTLLHEELLRRCVESGVSY-LSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAASGRLLQ- 253 (529)
T ss_pred CceeeccCcc-cEEcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcChhhhhc-
Confidence 3332222111 14899999999999999999987 6789999988777765 45567889999999999999994 322
Q ss_pred hcCCCCCCceeeEEEEeee--ccC-CCcceeEEccCCcc--c---ccCCCCceEEEEEccCCCCCCccEEEE-EEccCCC
Q 007945 267 IRSGRKPDGVCLVVGSCAR--GFK-DNSTSDVIYSSSSV--K---KVGDSEVQLFWEAFPAGSGPLDRTTYM-FTYIDPQ 337 (584)
Q Consensus 267 l~~~~~~~~~~~~vg~~a~--g~~-~~~~~di~~~~~~~--~---~~~~~~~~~~W~~fP~~~g~~~~~~~L-~~~~~~~ 337 (584)
.....+........|...+ ..+ +.+. .++.++... + ........|+| ++|.+++ ..++ .++....
T Consensus 254 ~~~~~~~~~~Q~a~Gi~ve~~~~~~d~~~-~vlMD~r~~~~~~~~~~~~~~p~FlY-vlP~~~~----~~~VE~T~l~~~ 327 (529)
T PLN02697 254 YEVGGPRVCVQTAYGVEVEVENNPYDPSL-MVFMDYRDYFKEKVSHLEAEYPTFLY-AMPMSST----RVFFEETCLASK 327 (529)
T ss_pred cccCCCCcccEEEEEEEEEecCCCCCcch-heeeccccccccccccccCCCceEEE-EeecCCC----eEEEEEeeeccC
Confidence 1111111111112222221 111 2222 233332210 0 00112356888 7999865 2333 2221101
Q ss_pred C--CCccHHHHHHHHHhhCcccccccCCceeEEEEEeeeeccccCCCCCccCCCEEEeCCCCCCcCCCCCCchhhHHHHH
Q 007945 338 A--GSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHL 415 (584)
Q Consensus 338 ~--~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLvGDAA~~v~PltGgG~g~~lr~~ 415 (584)
+ ....+++.+.+|++.. + +...++.+.++|.+|+.. +.+...+++++|||||+++||.||+||..+++.+
T Consensus 328 ~~l~~~~l~~~L~~~l~~~----G--i~~~~i~~~E~g~iPm~g--~~~~~~~~vl~vG~AAG~vhPsTGy~v~~~l~~A 399 (529)
T PLN02697 328 DAMPFDLLKKRLMSRLETM----G--IRILKTYEEEWSYIPVGG--SLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEA 399 (529)
T ss_pred CCCCHHHHHHHHHHHHHhC----C--CCcceEEEEEeeeecCCC--CCcccCCCeeEeehhhcCCCCchhhhHHHHHHhH
Confidence 1 1124555666666543 2 234456778899999953 4433479999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCC---C-C--hhhhHhhhchhhhhhHHH-----HHHHHhhccccCCCChHHHHHHHHHHHHHHHhcC
Q 007945 416 GRLSTGVYEAVRGDF---V-D--SYSLSLLNPYMPNLSASW-----LFQRAMSAKQQSDVSPDFINELLYVNFQCMQKLG 484 (584)
Q Consensus 416 ~~La~~i~~AL~~~~---l-s--~~~l~~L~~Ye~~~~~~~-----~l~k~m~~~~~~~~~~~~in~ll~~~f~~~~~lp 484 (584)
..+|+.|+++++.++ . + ...-..++.|+..|.... .+.+.|..- .+++++.+ +.||..||+||
T Consensus 400 ~~~A~~ia~~l~~~~~~~~~~~~~~~~~~l~~~~~lw~~e~~r~~~~~~~g~~~l--~~l~~~~~----~~ff~~ff~L~ 473 (529)
T PLN02697 400 PKYASVIARILKNVSSGGKLGTSNSSNISMQAWNTLWPQERKRQRAFFLFGLALI--LQLDTEGI----RTFFVTFFRLP 473 (529)
T ss_pred HHHHHHHHHHhhCCccccccccccchHHHHHHHHHhChHHHHHHHHHHHHHHHHH--HCCCHHHH----HHHHHHHHCCC
Confidence 999999999998775 0 0 011223667777666543 233344333 33566655 55556666999
Q ss_pred CcccccccccccchhHHHHHHHHHHHhCCCChHHHHhh--cCcchhhhhhHHHHHH
Q 007945 485 DPVLRPFLQDVIKFGPLAKTLGLVMLNKPQIIPSIFKQ--VGIPVLVDWSGHFFML 538 (584)
Q Consensus 485 ~~~~~~fl~d~~~~~~l~~~~~~~~~~~P~~~~~~~~~--~g~~~~~~~~~~~~~~ 538 (584)
+++|++||++++++.+++.+|+++|.++|+-+++.|.. .+.+....++++|+.+
T Consensus 474 ~~~~~~Fl~~~l~~~~l~~~~~~~f~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 529 (529)
T PLN02697 474 KWMWQGFLGSTLSSVDLILFALYMFVIAPNQLRMQLVRHLISDPTGATMIKTYLTL 529 (529)
T ss_pred HHHHhhHhhccCCHHHHHHHHHHHHHhCChhHHHHHHHhhcCCchHhHHHHHhhcC
Confidence 99999999999999999999999999999999988875 5767778999999753
No 3
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=100.00 E-value=1.2e-31 Score=287.42 Aligned_cols=372 Identities=17% Similarity=0.157 Sum_probs=236.3
Q ss_pred cEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945 112 DVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (584)
Q Consensus 112 DVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~ 190 (584)
||||||| ++|+++|+.|++.|++|+|||+++..+.+..|.++...++. +++ +.++...|+...+......
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~~---~~~------~~~~~~~~~~~~~~~~~~~ 71 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSD---LGL------ADCVEHVWPDVYEYRFPKQ 71 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhhh---hch------hhHHhhcCCCceEEecCCc
Confidence 8999995 57999999999999999999999866656678888765433 231 2333344433221111111
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEe-CCeEEEEEcCCcEEEccEEEEecCCChHHHhHhcC
Q 007945 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTY-ENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIRS 269 (584)
Q Consensus 191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~-~~gv~V~~~~G~~i~ArlVIdADG~~S~v~rql~~ 269 (584)
....+.. ...+++..|++.|.+++.+.|++++ .++++++..+ ++.+.|++.+|++++|++||+|||.+|.+++...
T Consensus 72 ~~~~~~~-~~~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s~~~~~~~- 148 (388)
T TIGR01790 72 PRKLGTA-YGSVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGPLVQYVRF- 148 (388)
T ss_pred chhcCCc-eeEEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCchhcccccC-
Confidence 1111111 1248999999999999998988886 5678888776 5677888888889999999999999996643211
Q ss_pred CCCCCceeeEEEEeee--ccC-CCcceeEEccCCcccc-cC---CCCceEEEEEccCCCCCCccEEEEEE-ccCCCC--C
Q 007945 270 GRKPDGVCLVVGSCAR--GFK-DNSTSDVIYSSSSVKK-VG---DSEVQLFWEAFPAGSGPLDRTTYMFT-YIDPQA--G 339 (584)
Q Consensus 270 ~~~~~~~~~~vg~~a~--g~~-~~~~~di~~~~~~~~~-~~---~~~~~~~W~~fP~~~g~~~~~~~L~~-~~~~~~--~ 339 (584)
+... ......|...+ ..+ +.+ ..++++...... .+ +.+..|+| .||.+++. .++-. ...... .
T Consensus 149 ~~~~-~~q~~~G~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~~~~~~f~~-~lP~~~~~----~~v~~~~~~~~~~~~ 221 (388)
T TIGR01790 149 PLNV-GFQVAYGVEARLSRPPHGPS-SMVIMDARVDQLAAPELKGYRPTFLY-AMPLGSTR----VFIEETSLADRPALP 221 (388)
T ss_pred CCCc-eEEEEEEEEEEEcCCCCCCC-ceEEEeccccccccccccCCCCceEE-EeecCCCe----EEEEeccccCCCCCC
Confidence 1111 11111222221 111 111 123333221110 00 00123888 79997642 22211 101001 1
Q ss_pred CccHHHHHHHHHhhCcccccccCCceeEEEEEeeeeccccCCCCCccCCCEEEeCCCCCCcCCCCCCchhhHHHHHHHHH
Q 007945 340 SPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLS 419 (584)
Q Consensus 340 ~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLvGDAA~~v~PltGgG~g~~lr~~~~La 419 (584)
...+++.+.+|++.+. . ...++.+.+.+.+|+.... +...+|+++||||||++||+||+|++.+++++..+|
T Consensus 222 ~~~~~~~l~~~~~~~g----~--~~~~i~~~~~~~iP~~~~~--~~~~~rv~liGdAAg~~~P~tG~Gi~~al~~a~~la 293 (388)
T TIGR01790 222 RDRLRQRILARLNAQG----W--QIKTIEEEEWGALPVGLPG--PFLPQRVAAFGAAAGMVHPTTGYSVARALSDAPGLA 293 (388)
T ss_pred HHHHHHHHHHHHHHcC----C--eeeEEEeeeeEEEecccCC--CccCCCeeeeechhcCcCCcccccHHHHHHHHHHHH
Confidence 1245556666665431 1 1223345567889996432 336799999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCChhhhHhhhchhhhhhHHHHH---HHHhhccccCCCChHHHHHHHHHHHHHHHhcCCccccccccccc
Q 007945 420 TGVYEAVRGDFVDSYSLSLLNPYMPNLSASWLF---QRAMSAKQQSDVSPDFINELLYVNFQCMQKLGDPVLRPFLQDVI 496 (584)
Q Consensus 420 ~~i~~AL~~~~ls~~~l~~L~~Ye~~~~~~~~l---~k~m~~~~~~~~~~~~in~ll~~~f~~~~~lp~~~~~~fl~d~~ 496 (584)
+.|.++++.+ +... ++.|++.++..+.- -+.|......+++|+.++++ |..|+++|.+.+..||.++.
T Consensus 294 ~~l~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----f~~~~~~~~~~~~~fl~~~~ 364 (388)
T TIGR01790 294 AAIAQALCQS--SELA---TAAWDGLWPTERRRQRYFRLLGRMLFLALEPEERRRF----FQRFFGLPEELWERFLAARL 364 (388)
T ss_pred HHHHHHhccC--HHHH---HHHHHHhchHHHHHHHHHHHHHHHHHHcCCHHHHHHH----HHHHHCCCHHHHhhhhcCCC
Confidence 9999999765 2222 45565554443321 22333222355567765555 55555899999999999999
Q ss_pred chhHHHHHHHHHHHhCCCChHHH
Q 007945 497 KFGPLAKTLGLVMLNKPQIIPSI 519 (584)
Q Consensus 497 ~~~~l~~~~~~~~~~~P~~~~~~ 519 (584)
++.+.+++|+++|.+.|+.+++.
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~ 387 (388)
T TIGR01790 365 SLPDLLRVLLRMFGQPPNPVRSA 387 (388)
T ss_pred CHHHHHHHHHHHhCcCChhhhhc
Confidence 99999999999999999988764
No 4
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=100.00 E-value=8.6e-31 Score=282.20 Aligned_cols=317 Identities=23% Similarity=0.284 Sum_probs=216.0
Q ss_pred CCccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCccc--ccCCHHHHHHHHHcCCCcccccchhhhcccCCceee
Q 007945 109 GTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQE--WNISRKELLELVESGILVEDDIDEATATKFNPNRCG 185 (584)
Q Consensus 109 ~~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~--w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~ 185 (584)
.+|||+|||| |+|+++|..||++|++|+|+||+..++.+.+ ..++...++.+..... .. +........+.
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~------~~-i~~~v~~~~~~ 74 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFD------EE-IERKVTGARIY 74 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcc------hh-hheeeeeeEEE
Confidence 3799999995 6899999999999999999999999987644 3577766666532211 01 22233333333
Q ss_pred ecCCCc--ccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcC-CcEEEccEEEEecCCChH
Q 007945 186 FEGKGE--IWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE-GKILSSHLIIDAMGNFSP 262 (584)
Q Consensus 186 f~~~~~--l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~-G~~i~ArlVIdADG~~S~ 262 (584)
+.+ .. +..+...++.|++..|+++|++++.++|++++.+++++++..+++++++.+.. +.+++||+||+|||.+|.
T Consensus 75 ~~~-~~~~~~~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~~s~ 153 (396)
T COG0644 75 FPG-EKVAIEVPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVNSA 153 (396)
T ss_pred ecC-CceEEecCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCcchH
Confidence 332 22 22222346789999999999999999999999999999999999887766544 478999999999999999
Q ss_pred HHhHhcCCCC-CCceeeEEEEeeeccC-CCcceeEEccCCcccccCCCCceEEEEEccCCCCCCccEEEEEEccCCCCCC
Q 007945 263 VVKQIRSGRK-PDGVCLVVGSCARGFK-DNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAGS 340 (584)
Q Consensus 263 v~rql~~~~~-~~~~~~~vg~~a~g~~-~~~~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~L~~~~~~~~~~ 340 (584)
+++.++.... +......+. .....+ +....++++...... ..+|.| .||.+++. ...++..........
T Consensus 154 l~~~lg~~~~~~~~~~~~~~-e~~~~~~~~~~~~~~~~~~~~~-----~~Gy~w-ifP~~~~~--~~VG~g~~~~~~~~~ 224 (396)
T COG0644 154 LARKLGLKDRKPEDYAIGVK-EVIEVPDDGDVEEFLYGPLDVG-----PGGYGW-IFPLGDGH--ANVGIGVLLDDPSLS 224 (396)
T ss_pred HHHHhCCCCCChhheeEEeE-EEEecCCCCceEEEEecCCccC-----CCceEE-EEECCCce--EEEEEEEecCCcCCC
Confidence 9999876521 222111111 111222 222333333322222 368999 79999763 344444333321122
Q ss_pred ccHHHHHHHHHhhCcccccccCCceeEEEEEeeeeccccCCCCCccCCCEEEeCCCCCCcCCCCCCchhhHHHHHHHHHH
Q 007945 341 PKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLST 420 (584)
Q Consensus 341 ~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLvGDAA~~v~PltGgG~g~~lr~~~~La~ 420 (584)
+.. +++++|....+. .....+ .+......+.+|.+.....+...+|+++|||||++++|++|+|+..++..+..+|+
T Consensus 225 ~~~-~~l~~f~~~~~~-~~~~~~-~~~~~~~~~~ip~~g~~~~~~~~~~~~lvGDAAg~v~p~~g~Gi~~A~~sg~~Aa~ 301 (396)
T COG0644 225 PFL-ELLERFKEHPAI-RKLLLG-GKILEYAAGGIPEGGPASRPLVGDGVLLVGDAAGFVNPLTGEGIRYAIKSGKLAAE 301 (396)
T ss_pred chH-HHHHHHHhCccc-chhccC-CceEEEeeeecccCCcCCCccccCCEEEEeccccCCCCcccCcHHHHHHHHHHHHH
Confidence 344 888888765432 221111 33455566788987533223678999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCChhhhHhhhchhhhhhHHHH
Q 007945 421 GVYEAVRGDFVDSYSLSLLNPYMPNLSASWL 451 (584)
Q Consensus 421 ~i~~AL~~~~ls~~~l~~L~~Ye~~~~~~~~ 451 (584)
.|.++++.+ .+. |..|++.+...+.
T Consensus 302 ~i~~~~~~~---~~~---l~~Y~~~~~~~~~ 326 (396)
T COG0644 302 AIAEALEGG---EEA---LAEYERLLRKSLA 326 (396)
T ss_pred HHHHHHHcC---hhH---HHHHHHHHHHHHH
Confidence 999999876 333 6668888877753
No 5
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=100.00 E-value=4.4e-30 Score=280.45 Aligned_cols=307 Identities=18% Similarity=0.170 Sum_probs=190.0
Q ss_pred CCccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeec
Q 007945 109 GTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE 187 (584)
Q Consensus 109 ~~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~ 187 (584)
.+|||+|||| |+|+++|..||++|++|+|+||++....+....|+.. .+.++|+... .+...+....+...
T Consensus 38 ~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~~k~cgg~i~~~---~l~~lgl~~~-----~~~~~i~~~~~~~p 109 (450)
T PLN00093 38 RKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDNAKPCGGAIPLC---MVGEFDLPLD-----IIDRKVTKMKMISP 109 (450)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHh---HHhhhcCcHH-----HHHHHhhhheEecC
Confidence 3699999996 5799999999999999999999864322222346543 3445566532 12222211111111
Q ss_pred CCCcccc-----cccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEe---CCeEEEEEcC-------C--cEEEc
Q 007945 188 GKGEIWV-----EDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTY---ENAAVLLLAE-------G--KILSS 250 (584)
Q Consensus 188 ~~~~l~~-----~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~---~~gv~V~~~~-------G--~~i~A 250 (584)
++..+.. +...-..+++..|++.|.++|.++|++++.+ .++++... ++.+.|++.+ | .+++|
T Consensus 110 ~~~~v~~~~~~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~v~a 188 (450)
T PLN00093 110 SNVAVDIGKTLKPHEYIGMVRREVLDSFLRERAQSNGATLING-LFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKTLEV 188 (450)
T ss_pred CceEEEecccCCCCCeEEEecHHHHHHHHHHHHHHCCCEEEec-eEEEEEeccCCCCcEEEEEEeccccccCCCccEEEe
Confidence 1111111 1111124899999999999999999999765 57777643 2455666532 3 47999
Q ss_pred cEEEEecCCChHHHhHhcCCCCCCceeeEEEEeeec----cC-CCcceeEEccCCcccccCCCCceEEEEEccCCCCCCc
Q 007945 251 HLIIDAMGNFSPVVKQIRSGRKPDGVCLVVGSCARG----FK-DNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLD 325 (584)
Q Consensus 251 rlVIdADG~~S~v~rql~~~~~~~~~~~~vg~~a~g----~~-~~~~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~ 325 (584)
|+||+|||.+|.++++++.+. ...+..+...... .+ +....++++... +.| ..|.| +||.++.
T Consensus 189 ~~VIgADG~~S~vrr~lg~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~p-----~~Y~W-ifP~g~~--- 256 (450)
T PLN00093 189 DAVIGADGANSRVAKDIDAGD--YDYAIAFQERIKIPDDKMEYYEDLAEMYVGDD-VSP-----DFYGW-VFPKCDH--- 256 (450)
T ss_pred CEEEEcCCcchHHHHHhCCCC--cceeEEEEEEEeCChhhccccCCeEEEEeCCC-CCC-----CceEE-EEECCCc---
Confidence 999999999999999987643 2222221111110 11 123445655433 233 57899 7999853
Q ss_pred cEEEEEEccCCCCCCccHHHHHHHHHhhCcccccccCCceeEEEEEeeeeccccCCCCCccCCCEEEeCCCCCCcCCCCC
Q 007945 326 RTTYMFTYIDPQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSF 405 (584)
Q Consensus 326 ~~~~L~~~~~~~~~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLvGDAA~~v~PltG 405 (584)
..+++..... ..++.++.+.+...++. .+...++.+...+.+|.. ...++..+|++|||||||+++|++|
T Consensus 257 ~~VG~g~~~~----~~~~~~~~~~l~~~~~~----~l~~~~~~~~~~~~ip~~--~~~~~~~~~vlLvGDAAg~v~P~tG 326 (450)
T PLN00093 257 VAVGTGTVVN----KPAIKKYQRATRNRAKD----KIAGGKIIRVEAHPIPEH--PRPRRVRGRVALVGDAAGYVTKCSG 326 (450)
T ss_pred EEEEEEEccC----CCChHHHHHHHHHHhhh----hcCCCeEEEEEEEEcccc--cccceeCCCcEEEeccccCCCcccc
Confidence 3444433221 12344444433322211 011222334444567763 2335678999999999999999999
Q ss_pred CchhhHHHHHHHHHHHHHHHHhCC--CCChhhhHhhhchhhhhhHH
Q 007945 406 GGFGSLTRHLGRLSTGVYEAVRGD--FVDSYSLSLLNPYMPNLSAS 449 (584)
Q Consensus 406 gG~g~~lr~~~~La~~i~~AL~~~--~ls~~~l~~L~~Ye~~~~~~ 449 (584)
+|++.+++++..+|+.|.++++.+ +.+... |+.|++.|+..
T Consensus 327 eGI~~Am~sg~~AAe~i~~~~~~g~~~~s~~~---L~~Y~~~~~~~ 369 (450)
T PLN00093 327 EGIYFAAKSGRMCAEAIVEGSENGTRMVDEAD---LREYLRKWDKK 369 (450)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhcCCCcCCHHH---HHHHHHHHHHH
Confidence 999999999999999999999765 223344 67788776654
No 6
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.98 E-value=1.5e-29 Score=271.75 Aligned_cols=303 Identities=18% Similarity=0.150 Sum_probs=193.2
Q ss_pred ccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCC
Q 007945 111 FDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK 189 (584)
Q Consensus 111 yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~ 189 (584)
|||||||| |+|+++|..||++|++|+|+||+........+.|+... +.++|+.. ..+...+....+....+
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~~cg~~i~~~~---l~~l~i~~-----~~~~~~~~~~~~~~~~~ 72 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERALSNIKPCGGAIPPCL---IEEFDIPD-----SLIDRRVTQMRMISPSR 72 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcCcCcCCcCHhh---hhhcCCch-----HHHhhhcceeEEEcCCC
Confidence 79999995 67999999999999999999998321112346677643 44456542 22223332222221111
Q ss_pred Ccc--cccccccc--eeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcC------C--cEEEccEEEEec
Q 007945 190 GEI--WVEDILNL--GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE------G--KILSSHLIIDAM 257 (584)
Q Consensus 190 ~~l--~~~~~l~~--~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~------G--~~i~ArlVIdAD 257 (584)
..+ ..+...++ .+++..|++.|.+++.++|++++.+ +|+++..+++++.|++.+ | .+++|++||+||
T Consensus 73 ~~~~~~~~~~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~~~~~v~~~~~~~~~~~~~~~i~a~~VI~Ad 151 (388)
T TIGR02023 73 VPIKVTIPSEDGYVGMVRREVFDSYLRERAQKAGAELIHG-LFLKLERDRDGVTLTYRTPKKGAGGEKGSVEADVVIGAD 151 (388)
T ss_pred ceeeeccCCCCCceEeeeHHHHHHHHHHHHHhCCCEEEee-EEEEEEEcCCeEEEEEEeccccCCCcceEEEeCEEEECC
Confidence 111 11111122 4899999999999999999999765 699998888888877653 2 479999999999
Q ss_pred CCChHHHhHhcCCCCCCceeeEEEEeeec----cC-CCcceeEEccCCcccccCCCCceEEEEEccCCCCCCccEEEEEE
Q 007945 258 GNFSPVVKQIRSGRKPDGVCLVVGSCARG----FK-DNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFT 332 (584)
Q Consensus 258 G~~S~v~rql~~~~~~~~~~~~vg~~a~g----~~-~~~~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~L~~ 332 (584)
|.+|.++++++...+. .....+...... .. +.+..++++.. +..| ..|.| .||.++. ....+..
T Consensus 152 G~~S~v~r~lg~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p-----~~y~w-v~P~~~~---~~vg~~~ 220 (388)
T TIGR02023 152 GANSPVAKELGLPKNL-PRVIAYQERIKLPDDKMAYYEELADVYYGG-EVSP-----DFYGW-VFPKGDH---IAVGTGT 220 (388)
T ss_pred CCCcHHHHHcCCCCCC-cEEEEEEEEecCCchhcccCCCeEEEEECC-CcCC-----CceEE-EeeCCCe---eEEeEEE
Confidence 9999999998765322 121111111110 00 12233444432 2332 47999 7999753 2333332
Q ss_pred ccCCCCCCccHHHHHHHHHhhCcccccccCCceeEEEEEeeeeccccCCCCCccCCCEEEeCCCCCCcCCCCCCchhhHH
Q 007945 333 YIDPQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLT 412 (584)
Q Consensus 333 ~~~~~~~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLvGDAA~~v~PltGgG~g~~l 412 (584)
.. ...+.+++++.+.+.++ + ...+..+...+.+|+. ...++..+|+++||||||+++|++|+|++.++
T Consensus 221 ~~----~~~~~~~~~~~l~~~~~-~-----~~~~~~~~~~~~ip~~--~~~~~~~~~v~lvGDAAg~v~P~tG~GI~~A~ 288 (388)
T TIGR02023 221 GT----HGFDAKQLQANLRRRAG-L-----DGGQTIRREAAPIPMK--PRPRWDFGRAMLVGDAAGLVTPASGEGIYFAM 288 (388)
T ss_pred CC----CCCCHHHHHHHHHHhhC-C-----CCceEeeeeeEecccc--ccccccCCCEEEEeccccCcCCcccccHHHHH
Confidence 21 11244555555544432 1 1112223334567763 22345679999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCChhhhHhhhchhhhhhHHH
Q 007945 413 RHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLSASW 450 (584)
Q Consensus 413 r~~~~La~~i~~AL~~~~ls~~~l~~L~~Ye~~~~~~~ 450 (584)
+++..+++.|.++++.++ .. .|+.|+..|+..+
T Consensus 289 ~sg~~aa~~i~~~l~~~~--~~---~L~~Y~~~~~~~~ 321 (388)
T TIGR02023 289 KSGQMAAQAIAEYLQNGD--AT---DLRHYERKFMKLY 321 (388)
T ss_pred HHHHHHHHHHHHHHhcCC--HH---HHHHHHHHHHHHH
Confidence 999999999999997652 33 3778888887664
No 7
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=99.97 E-value=9.8e-30 Score=274.16 Aligned_cols=330 Identities=16% Similarity=0.147 Sum_probs=195.8
Q ss_pred ccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCC
Q 007945 111 FDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK 189 (584)
Q Consensus 111 yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~ 189 (584)
+||||||| |+|+++|..||++|++|+||||++..+.+....|+.. .|.++|+... .+...++...+...++
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~cg~~i~~~---~l~~~g~~~~-----~~~~~i~~~~~~~p~~ 72 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKPCGGAIPLC---MVDEFALPRD-----IIDRRVTKMKMISPSN 72 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHh---hHhhccCchh-----HHHhhhceeEEecCCc
Confidence 69999995 6799999999999999999999865432222346543 3455666432 2222222111111111
Q ss_pred Ccccc-----cccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEE---eCCeEEEEE--cC-----C--cEEEccE
Q 007945 190 GEIWV-----EDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICT---YENAAVLLL--AE-----G--KILSSHL 252 (584)
Q Consensus 190 ~~l~~-----~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~---~~~gv~V~~--~~-----G--~~i~Arl 252 (584)
..+.. +......+++..|++.|.+++.++|++++.++ +.++.. .++.+.|++ .+ | .+++||+
T Consensus 73 ~~~~~~~~~~~~~~~~~v~R~~~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~ 151 (398)
T TIGR02028 73 IAVDIGRTLKEHEYIGMLRREVLDSFLRRRAADAGATLINGL-VTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDA 151 (398)
T ss_pred eEEEeccCCCCCCceeeeeHHHHHHHHHHHHHHCCcEEEcce-EEEEEeccCCCceEEEEEeeccccccCCCccEEEeCE
Confidence 01110 11111258999999999999999999998875 767643 234455553 22 3 3799999
Q ss_pred EEEecCCChHHHhHhcCCCCCCceeeEEEEeeeccC------CCcceeEEccCCcccccCCCCceEEEEEccCCCCCCcc
Q 007945 253 IIDAMGNFSPVVKQIRSGRKPDGVCLVVGSCARGFK------DNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDR 326 (584)
Q Consensus 253 VIdADG~~S~v~rql~~~~~~~~~~~~vg~~a~g~~------~~~~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~ 326 (584)
||+|||.+|.++++++.... ..+..+....+ ++ +.+..+++++.. ..| .+|.| +||+++. .
T Consensus 152 VIgADG~~S~v~~~~g~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~-~~p-----~gY~W-ifP~~~~---~ 218 (398)
T TIGR02028 152 VIGADGANSRVAKEIDAGDY--SYAIAFQERIR-LPDEKMAYYDDLAEMYVGDD-VSP-----DFYGW-VFPKCDH---V 218 (398)
T ss_pred EEECCCcchHHHHHhCCCCc--ceEEEEEEEee-CChhhcccCCCeEEEEeCCC-CCC-----CceEE-EEECCCe---E
Confidence 99999999999999875421 22222211211 11 123345555432 333 57999 7999853 3
Q ss_pred EEEEEEccCCCCCCccHHHHHHHHHhhCcccccccCCceeEEEEEeeeeccccCCCCCccCCCEEEeCCCCCCcCCCCCC
Q 007945 327 TTYMFTYIDPQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFG 406 (584)
Q Consensus 327 ~~~L~~~~~~~~~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLvGDAA~~v~PltGg 406 (584)
.+++.... ..+.+.++.+.+....+. .+...++.+...+.+|.. ...++..+|+++||||||++||+||+
T Consensus 219 ~VG~g~~~----~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~ip~~--~~~~~~~~~~llvGDAAg~v~P~tGe 288 (398)
T TIGR02028 219 AVGTGTVA----AKPEIKRLQSGIRARAAG----KVAGGRIIRVEAHPIPEH--PRPRRVVGRVALVGDAAGYVTKCSGE 288 (398)
T ss_pred EEEEEeCC----CCccHHHHHHhhhhhhhh----ccCCCcEEEEEEEecccc--ccccEECCCEEEEEcCCCCCCccccc
Confidence 34443221 112333333322111110 011122233344567763 23356789999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHhCCC--CChhhhHhhhchhhhhhHHH--HHHHHhhccc-cCCCChHHHHHHHHHH
Q 007945 407 GFGSLTRHLGRLSTGVYEAVRGDF--VDSYSLSLLNPYMPNLSASW--LFQRAMSAKQ-QSDVSPDFINELLYVN 476 (584)
Q Consensus 407 G~g~~lr~~~~La~~i~~AL~~~~--ls~~~l~~L~~Ye~~~~~~~--~l~k~m~~~~-~~~~~~~~in~ll~~~ 476 (584)
|++.+++++..+|+.|.++++.++ .+... |+.|+..|+..+ .+.....+.. ... +++.+|++++.+
T Consensus 289 GI~~A~~sg~~aa~~i~~~~~~~~~~~~~~~---l~~Y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 359 (398)
T TIGR02028 289 GIYFAAKSGRMCAEAIVEESRLGGAVTEEGD---LAGYLRRWDKEYRPTYRVLDLLQRVFYR-SNAGREAFVEMC 359 (398)
T ss_pred chHHHHHHHHHHHHHHHHHHhcCCCcCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHcC-CcHHHHHHHHHh
Confidence 999999999999999999998765 34444 667877766543 1222222221 222 566666555544
No 8
>PRK10015 oxidoreductase; Provisional
Probab=99.97 E-value=4e-29 Score=271.79 Aligned_cols=325 Identities=17% Similarity=0.190 Sum_probs=199.5
Q ss_pred CCccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCccc--ccCCHHHHHHHHHcCCCcccccchhhhcc---c--C
Q 007945 109 GTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQE--WNISRKELLELVESGILVEDDIDEATATK---F--N 180 (584)
Q Consensus 109 ~~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~--w~Is~~~l~~L~~lGl~~~~ele~~i~~~---~--~ 180 (584)
.+|||||||| ++|+++|+.||++|++|+||||.+.++.+.. ..++...++.+.. ++.....++..+... + .
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~-~~~~~~~i~~~~~~~~~~~~~~ 82 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIP-GFAASAPVERKVTREKISFLTE 82 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHHcc-cccccCCccccccceeEEEEeC
Confidence 3699999996 5799999999999999999999998875421 1244444444421 222111122211110 0 0
Q ss_pred C--ceeeecCCCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecC
Q 007945 181 P--NRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMG 258 (584)
Q Consensus 181 ~--~~v~f~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG 258 (584)
. ..+.|.. .....+....+.+++..|+++|.+++++.|++++.+++|+++..+++.+++...++.+++|++||+|||
T Consensus 83 ~~~~~~~~~~-~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~~~~~i~A~~VI~AdG 161 (429)
T PRK10015 83 ESAVTLDFHR-EQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILEANVVILADG 161 (429)
T ss_pred CCceEeeccc-CCCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEeCCeEEECCEEEEccC
Confidence 0 1122211 111111122467899999999999999999999999999999887777653334566899999999999
Q ss_pred CChHHHhHhcCCCC--CCceeeEEEEeeeccCCCcceeEEccCCcccccCCCCceEEEE--------------EccCCCC
Q 007945 259 NFSPVVKQIRSGRK--PDGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWE--------------AFPAGSG 322 (584)
Q Consensus 259 ~~S~v~rql~~~~~--~~~~~~~vg~~a~g~~~~~~~di~~~~~~~~~~~~~~~~~~W~--------------~fP~~~g 322 (584)
.+|.++++++.... +......+.... ..+.... +..+.. .. ..+++|. .||..+.
T Consensus 162 ~~s~v~~~lg~~~~~~~~~~~~gvk~~~-~~~~~~i-~~~~~~--~~-----~~g~~w~~~g~~~~g~~g~G~~~~~~d~ 232 (429)
T PRK10015 162 VNSMLGRSLGMVPASDPHHYAVGVKEVI-GLTPEQI-NDRFNI--TG-----EEGAAWLFAGSPSDGLMGGGFLYTNKDS 232 (429)
T ss_pred cchhhhcccCCCcCCCcCeEEEEEEEEE-eCCHHHh-hHhhcC--CC-----CCCeEEEecCccCCCCCCceEEEEcCCc
Confidence 99999998765322 222221111111 2221100 000100 00 1234443 2343322
Q ss_pred CCccEEEEEEcc-CCCCCCccHHHHHHHHHhhCcccccccCCceeEEEEEeeeeccccC-CCCCccCCCEEEeCCCCCCc
Q 007945 323 PLDRTTYMFTYI-DPQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRD-SPLPAAFNRILQFGDASGIQ 400 (584)
Q Consensus 323 ~~~~~~~L~~~~-~~~~~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~-~~~~~~~~rvlLvGDAA~~v 400 (584)
...++.... .......++.+++++|. ..|.++.. +...+........+|.... ...+.+.+|+++|||||+++
T Consensus 233 ---v~vGv~~~~~~~~~~~~~~~~~l~~~~-~~p~~~~~-~~~~~~~e~~~~~ip~gg~~~~~~~~~~g~llvGDAAg~v 307 (429)
T PRK10015 233 ---ISLGLVCGLGDIAHAQKSVPQMLEDFK-QHPAIRPL-ISGGKLLEYSAHMVPEGGLAMVPQLVNDGVMIVGDAAGFC 307 (429)
T ss_pred ---EEEEEEEehhhhccCCCCHHHHHHHHh-hChHHHHH-hcCCEEEEEeeEEcccCCcccCCccccCCeEEEecccccc
Confidence 333332221 11112346778887774 45544332 2233333334456776422 12357789999999999999
Q ss_pred CC--CCCCchhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhchhhhhhHHHHH
Q 007945 401 SP--VSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLSASWLF 452 (584)
Q Consensus 401 ~P--ltGgG~g~~lr~~~~La~~i~~AL~~~~ls~~~l~~L~~Ye~~~~~~~~l 452 (584)
|| +++.|++.++.++..+|+.+.+|++.++.|... |+.|+..|+.++.+
T Consensus 308 ~p~~~~g~Gi~~A~~SG~~AAe~i~~a~~~~d~s~~~---l~~Y~~~~~~~~~~ 358 (429)
T PRK10015 308 LNLGFTVRGMDLAIASAQAAATTVIAAKERADFSASS---LAQYKRELEQSCVM 358 (429)
T ss_pred cccCccccchhHHHHHHHHHHHHHHHHHhcCCCcccc---HHHHHHHHHHCHHH
Confidence 95 599999999999999999999999988887777 67899988877543
No 9
>PRK08013 oxidoreductase; Provisional
Probab=99.97 E-value=3.2e-29 Score=270.24 Aligned_cols=314 Identities=17% Similarity=0.158 Sum_probs=193.6
Q ss_pred CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCC-------cccccCCHHHHHHHHHcCCCcccccchh-hhc---
Q 007945 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGR-------EQEWNISRKELLELVESGILVEDDIDEA-TAT--- 177 (584)
Q Consensus 110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~-------~r~w~Is~~~l~~L~~lGl~~~~ele~~-i~~--- 177 (584)
+|||+|||| ++|+++|+.|+++|++|+||||++.+.. .+...|++.+++.|.++|+++...-... ...
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~~~ 82 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYHGME 82 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccccEEE
Confidence 589999995 5799999999999999999999986432 2344578889999999999865211100 000
Q ss_pred ccCC---ceeeecCCCcccccccccceeCHHHHHHHHHHHHHhC-CCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEE
Q 007945 178 KFNP---NRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLI 253 (584)
Q Consensus 178 ~~~~---~~v~f~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~-G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlV 253 (584)
-++. ..+.|... ....+ ..++.+++..|++.|.+++.+. |++++.++++++++.++++++|++.+|++++||+|
T Consensus 83 ~~~~~~~~~~~~~~~-~~~~~-~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lv 160 (400)
T PRK08013 83 VWDKDSFGRIAFDDQ-SMGYS-HLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENEAFLTLKDGSMLTARLV 160 (400)
T ss_pred EEeCCCCceEEEccc-ccCCC-ccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEcCCCEEEeeEE
Confidence 0111 12222211 11111 1245789999999999999886 78999999999999888899999989999999999
Q ss_pred EEecCCChHHHhHhcCCCC---CCceeeEEEEeeeccCCCcceeEEccCCcccccCCCCceEEEEEccCCCCCCccEEEE
Q 007945 254 IDAMGNFSPVVKQIRSGRK---PDGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYM 330 (584)
Q Consensus 254 IdADG~~S~v~rql~~~~~---~~~~~~~vg~~a~g~~~~~~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~L 330 (584)
|+|||.+|.+|++++.... +...+.+. .+....+........+. +.++++ .+|..++. ...+.
T Consensus 161 VgADG~~S~vR~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~----------~~g~~~-~~p~~~~~--~~~~~ 226 (400)
T PRK08013 161 VGADGANSWLRNKADIPLTFWDYQHHALVA-TIRTEEPHDAVARQVFH----------GDGILA-FLPLSDPH--LCSIV 226 (400)
T ss_pred EEeCCCCcHHHHHcCCCccccccCcEEEEE-EEeccCCCCCEEEEEEc----------CCCCEE-EEECCCCC--eEEEE
Confidence 9999999999999876432 22333221 11111111111111110 123444 46765431 22233
Q ss_pred EEccCCCCC---CccHHHHHHHHHhhCcccccccCCceeEEEEEeeeeccccCCCCCccCCCEEEeCCCCCCcCCCCCCc
Q 007945 331 FTYIDPQAG---SPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGG 407 (584)
Q Consensus 331 ~~~~~~~~~---~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLvGDAA~~v~PltGgG 407 (584)
+........ ....+++.+.+...++. .++..++... ...+|.......++..+|++|+|||||.+||+.|||
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~l~~~~~~~~-~~~~~l~~~~~~~~~~grv~LiGDAAH~~~P~~GQG 301 (400)
T PRK08013 227 WSLSPEEAQRMQQAPEEEFNRALAIAFDN----RLGLCELESE-RQVFPLTGRYARQFAAHRLALVGDAAHTIHPLAGQG 301 (400)
T ss_pred EEcCHHHHHHHHcCCHHHHHHHHHHHHhH----hhCceEecCC-ccEEecceeecccccCCcEEEEechhhcCCccccCc
Confidence 322210000 00111111111111110 1122222211 123455443445778899999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhchhhh
Q 007945 408 FGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPN 445 (584)
Q Consensus 408 ~g~~lr~~~~La~~i~~AL~~~~ls~~~l~~L~~Ye~~ 445 (584)
+|++++|+..|++.|..++..+. +......|+.|+..
T Consensus 302 ~n~gi~Da~~La~~L~~~~~~~~-~~~~~~~L~~Y~~~ 338 (400)
T PRK08013 302 VNLGFMDAAELIAELRRLHRQGK-DIGQHLYLRRYERS 338 (400)
T ss_pred hhhhHHHHHHHHHHHHHHHhcCC-CcccHHHHHHHHHH
Confidence 99999999999999998876542 11222237788864
No 10
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.97 E-value=3.3e-29 Score=269.11 Aligned_cols=313 Identities=19% Similarity=0.199 Sum_probs=198.2
Q ss_pred CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCC--CCCCcccccCCHHHHHHHHHcCCCcccccchh-hh--ccc-C-C
Q 007945 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNT--LKGREQEWNISRKELLELVESGILVEDDIDEA-TA--TKF-N-P 181 (584)
Q Consensus 110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~--~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~-i~--~~~-~-~ 181 (584)
.+||+|||| ++|+++|+.|+++|++|+||||.+ .....+...|+..+++.|+++|+++..+-... .. ..+ . .
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~~ 81 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDGG 81 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEecCC
Confidence 589999996 579999999999999999999982 12223566799999999999998522111010 00 001 1 1
Q ss_pred -ceeeecCCCcccccccccceeCHHHHHHHHHHHHHhCC-CEEEeCceEEEEEEeCCeEEEEEc-CCcEEEccEEEEecC
Q 007945 182 -NRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLG-GVIFEGYSVSSICTYENAAVLLLA-EGKILSSHLIIDAMG 258 (584)
Q Consensus 182 -~~v~f~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G-~~i~~~t~v~~v~~~~~gv~V~~~-~G~~i~ArlVIdADG 258 (584)
..+.|.. ..... ..+.+.+.+..|.+.|.+++.+.+ ++++.+++|+.++.++++++|+++ +|++++||+||+|||
T Consensus 82 ~~~~~~~~-~~~~~-~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVgADG 159 (387)
T COG0654 82 RRLLIFDA-AELGR-GALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGADG 159 (387)
T ss_pred ceeEEecc-cccCC-CcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcEEecCEEEECCC
Confidence 1233332 11111 345677999999999999999887 799999999999999999999988 899999999999999
Q ss_pred CChHHHhHhcCCC----CCCceeeEEEEeeeccCCCcceeEEccCCcccccCCCCceEEEEEccCCCCCCccEEEEEEcc
Q 007945 259 NFSPVVKQIRSGR----KPDGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYI 334 (584)
Q Consensus 259 ~~S~v~rql~~~~----~~~~~~~~vg~~a~g~~~~~~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~L~~~~ 334 (584)
.+|.+|++++... .+...+.+... ....+.......++.. .+.+. .+|.++. ....++...
T Consensus 160 ~~S~vR~~~~~~~~~~~~y~~~~l~~~~-~~~~~~~~~~~~~~~~---------~~~~~--~~p~~~~---~~~~~~~~~ 224 (387)
T COG0654 160 ANSAVRRAAGIAEFSGRDYGQTALVANV-EPEEPHEGRAGERFTH---------AGPFA--LLPLPDN---RSSVVWSLP 224 (387)
T ss_pred CchHHHHhcCCCCccCCCCCceEEEEEe-ecCCCCCCeEEEEecC---------CCceE--EEecCCC---ceeEEEECC
Confidence 9999999988322 22233322111 1111111111111111 01111 3455432 222222221
Q ss_pred CCCC---CCccHHHHHHHHHhhCcccccccCCceeEEEEEeeeeccccCCCCCccCCCEEEeCCCCCCcCCCCCCchhhH
Q 007945 335 DPQA---GSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSL 411 (584)
Q Consensus 335 ~~~~---~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLvGDAA~~v~PltGgG~g~~ 411 (584)
.... ...+.++..+++.+.+|.... +...+... ....+|.......++..+|++|+|||||.+||+.|||+|++
T Consensus 225 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~-~~~~~pl~~~~a~~~~~~Rv~LiGDAAH~~~P~~gQG~nlg 301 (387)
T COG0654 225 PGPAEDLQGLSDEEFLRELQRRLGERDP--LGRVTLVS-SRSAFPLSLRVAERYRRGRVVLIGDAAHAMHPLAGQGANLA 301 (387)
T ss_pred hhhHHHHhcCCHHHHHHHHHHhcCcccc--cceEEEcc-ccccccccchhhhheecCcEEEEeeccccCCCccccchhhh
Confidence 1000 011223333444444544311 22222222 22356665445567888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCChhhhHhhhchhhhh
Q 007945 412 TRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNL 446 (584)
Q Consensus 412 lr~~~~La~~i~~AL~~~~ls~~~l~~L~~Ye~~~ 446 (584)
++|+..|++.|.++...+. + .+.|..|+..-
T Consensus 302 l~Da~~La~~L~~~~~~~~-~---~~~L~~Y~~~R 332 (387)
T COG0654 302 LEDAAALAEALAAAPRPGA-D---AAALAAYEARR 332 (387)
T ss_pred hhhHHHHHHHHHHHhhcCc-c---HHHHHHHHHhh
Confidence 9999999999999987432 2 33477787643
No 11
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.97 E-value=4.2e-29 Score=266.97 Aligned_cols=283 Identities=13% Similarity=0.159 Sum_probs=179.9
Q ss_pred ccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC-----CcccccCCHHHHHHHHHcCCCcccccchhhhcccCC---
Q 007945 111 FDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG-----REQEWNISRKELLELVESGILVEDDIDEATATKFNP--- 181 (584)
Q Consensus 111 yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~-----~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~--- 181 (584)
+||+|||| ++|+++|..|++.|++|+|+|+.+... ..+...+++++++.|..+|+|+.. +.. ...+..
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l--~~~-~~~~~~~~~ 78 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEEL--EKF-VAEMQDIYV 78 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHH--Hhh-cCCCcEEEE
Confidence 79999996 579999999999999999999985422 135677999999999999998642 111 111111
Q ss_pred ------ceeeecCCCcccccccccceeCHHHHHHHHHHHHHhCC-CEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEE
Q 007945 182 ------NRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLG-GVIFEGYSVSSICTYENAAVLLLAEGKILSSHLII 254 (584)
Q Consensus 182 ------~~v~f~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G-~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVI 254 (584)
..+.|... ....+++.+++..|++.|.+++.+.+ ++++.+++++++..++++++|++.++ +++|++||
T Consensus 79 ~~~~g~~~~~~~~~----~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~~-~~~adlvI 153 (374)
T PRK06617 79 VDNKASEILDLRND----ADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHNDYSIIKFDDK-QIKCNLLI 153 (374)
T ss_pred EECCCceEEEecCC----CCCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCeEEEEEcCC-EEeeCEEE
Confidence 11222110 11224577999999999999999886 68999999999998889999998766 89999999
Q ss_pred EecCCChHHHhHhcCCC--CCCceeeEEEEeeeccCCCc-ceeEEccCCcccccCCCCceEEEEEccCCCCCCccEEEEE
Q 007945 255 DAMGNFSPVVKQIRSGR--KPDGVCLVVGSCARGFKDNS-TSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMF 331 (584)
Q Consensus 255 dADG~~S~v~rql~~~~--~~~~~~~~vg~~a~g~~~~~-~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~L~ 331 (584)
+|||.+|.+|++++... .....|.+.. +....+... ..+.+.. .+.+| .+|.+++ ....++
T Consensus 154 gADG~~S~vR~~l~~~~~~~~y~~~~~~~-v~~~~~~~~~~~~~~~~-----------~g~~~-~lPl~~~---~~~~~v 217 (374)
T PRK06617 154 ICDGANSKVRSHYFANEIEKPYQTALTFN-IKHEKPHENCAMEHFLP-----------LGPFA-LLPLKDQ---YASSVI 217 (374)
T ss_pred EeCCCCchhHHhcCCCcccccCCeEEEEE-EeccCCCCCEEEEEecC-----------CCCEE-EeECCCC---CeEEEE
Confidence 99999999999886543 1113332221 111111111 1122211 12344 4677654 212232
Q ss_pred EccCCCC-C---CccHHHHHHHHHhhCcccccccCCceeEEEEEeeeeccccCCCCCccCCCEEEeCCCCCCcCCCCCCc
Q 007945 332 TYIDPQA-G---SPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGG 407 (584)
Q Consensus 332 ~~~~~~~-~---~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLvGDAA~~v~PltGgG 407 (584)
+...... . ..+. +.+.+.++.. ... .++.+.... ....+|++.....++..+|++|+|||||.+||++|||
T Consensus 218 w~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~-~~~~i~~~~-~~~~~~l~~~~~~~~~~grv~LiGDAAH~~~P~~GQG 292 (374)
T PRK06617 218 WSTSSDQAALIVNLPV-EEVRFLTQRN--AGN-SLGKITIDS-EISSFPLKARIANRYFHNRIVLIADTAHTVHPLAGQG 292 (374)
T ss_pred EeCCHHHHHHHHcCCH-HHHHHHHHHh--hch-hcCceeecc-ceeEEEeeeeeccceecCCEEEEEcccccCCCCcccc
Confidence 2211000 0 0011 1122221111 000 122332221 2345777655555788899999999999999999999
Q ss_pred hhhHHHHHHHHHHHH
Q 007945 408 FGSLTRHLGRLSTGV 422 (584)
Q Consensus 408 ~g~~lr~~~~La~~i 422 (584)
+|++++|+..|++.+
T Consensus 293 ~n~gl~Da~~La~~L 307 (374)
T PRK06617 293 LNQGIKDIEILSMIV 307 (374)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998766
No 12
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=99.97 E-value=1.5e-28 Score=263.68 Aligned_cols=311 Identities=18% Similarity=0.158 Sum_probs=193.8
Q ss_pred CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCC-------cccccCCHHHHHHHHHcCCCcccccc------hhh
Q 007945 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGR-------EQEWNISRKELLELVESGILVEDDID------EAT 175 (584)
Q Consensus 110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~-------~r~w~Is~~~l~~L~~lGl~~~~ele------~~i 175 (584)
+|||+|||| ++|+++|+.|+++|++|+|||+.+.... .+...+++..++.|..+|+|+..+-. ...
T Consensus 5 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~ 84 (391)
T PRK08020 5 PTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPYRRLE 84 (391)
T ss_pred cccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCcccceEE
Confidence 699999996 5799999999999999999999864321 13346888999999999998653210 100
Q ss_pred hcccCCceeeecCCCcccccccccceeCHHHHHHHHHHHHHhC-CCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEE
Q 007945 176 ATKFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLII 254 (584)
Q Consensus 176 ~~~~~~~~v~f~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~-G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVI 254 (584)
...+....+.|.. ..+.. ...++.+++..|++.|.+++.+. |++++.+++++++..+++++.|++.+|++++|++||
T Consensus 85 ~~~~~~~~~~~~~-~~~~~-~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI 162 (391)
T PRK08020 85 TWEWETAHVVFDA-AELKL-PELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDGWELTLADGEEIQAKLVI 162 (391)
T ss_pred EEeCCCCeEEecc-cccCC-CccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCCCEEEeCEEE
Confidence 1112223333322 11111 12346789999999999999887 889999999999988888888988888899999999
Q ss_pred EecCCChHHHhHhcCCC---CCCceeeEEEEeeeccCCCcceeEEccCCcccccCCCCceEEEEEccCCCCCCccEEEEE
Q 007945 255 DAMGNFSPVVKQIRSGR---KPDGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMF 331 (584)
Q Consensus 255 dADG~~S~v~rql~~~~---~~~~~~~~vg~~a~g~~~~~~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~L~ 331 (584)
+|||.+|++|++++.+. .+.+.|.+........+.....+.+... +... .+|..++ . ..+.
T Consensus 163 ~AdG~~S~vR~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~-----------g~~~-~~p~~~~---~-~~~v 226 (391)
T PRK08020 163 GADGANSQVRQMAGIGVHGWQYRQSCMLISVKCENPPGDSTWQQFTPS-----------GPRA-FLPLFDN---W-ASLV 226 (391)
T ss_pred EeCCCCchhHHHcCCCccccCCCceEEEEEEEecCCCCCEEEEEEcCC-----------CCEE-EeECCCC---c-EEEE
Confidence 99999999999987542 2223332211111110000001111111 1111 2454432 1 2222
Q ss_pred EccCCCC----CCccHHHHHHHHHhhCcccccccCCceeEEEEEeeeeccccCCCCCccCCCEEEeCCCCCCcCCCCCCc
Q 007945 332 TYIDPQA----GSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGG 407 (584)
Q Consensus 332 ~~~~~~~----~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLvGDAA~~v~PltGgG 407 (584)
.+..... ...+.+++.+.+.+.+|.. +..+... ..+.+|++.....++..+|++|+|||||.+||+.|||
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~--~~~~~pl~~~~~~~~~~~rv~LvGDAAH~~~P~~GqG 300 (391)
T PRK08020 227 WYDSPARIRQLQAMSMAQLQQEIAAHFPAR----LGAVTPV--AAGAFPLTRRHALQYVQPGLALVGDAAHTINPLAGQG 300 (391)
T ss_pred EECCHHHHHHHHCCCHHHHHHHHHHHhhhh----ccceEec--cccEeecceeehhhhccCcEEEEechhhccCCcccch
Confidence 2221000 0012233333333333321 1222211 2345677654455778899999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhchhhh
Q 007945 408 FGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPN 445 (584)
Q Consensus 408 ~g~~lr~~~~La~~i~~AL~~~~ls~~~l~~L~~Ye~~ 445 (584)
++++++|+..|++.+.++.+.+. +......|+.|+..
T Consensus 301 ~n~al~Da~~La~~L~~~~~~~~-~~~~~~~L~~Y~~~ 337 (391)
T PRK08020 301 VNLGYRDVDALLDVLVNARSYGE-AWASEAVLKRYQRR 337 (391)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCC-CcccHHHHHHHHHH
Confidence 99999999999999998876542 22222346777764
No 13
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.96 E-value=5.3e-28 Score=259.73 Aligned_cols=312 Identities=18% Similarity=0.177 Sum_probs=192.9
Q ss_pred CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCC------cccccCCHHHHHHHHHcCCCcccccchhh-hc---c
Q 007945 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGR------EQEWNISRKELLELVESGILVEDDIDEAT-AT---K 178 (584)
Q Consensus 110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~------~r~w~Is~~~l~~L~~lGl~~~~ele~~i-~~---~ 178 (584)
.+||+|||| ++|+++|+.|+++|++|+||||++.++. .+...+++.+++.|..+|+|+...-.... .. -
T Consensus 6 ~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~ 85 (392)
T PRK08773 6 RRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQPYRRMRV 85 (392)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCcccEEEE
Confidence 689999996 5799999999999999999999876431 23356888999999999998653211000 00 0
Q ss_pred cC---CceeeecCCCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEE
Q 007945 179 FN---PNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIID 255 (584)
Q Consensus 179 ~~---~~~v~f~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVId 255 (584)
|+ ...+.|... .+ .+..+++.+++..|.+.|.+++.+.|++++.+++++++..++++++|++.+|++++|++||+
T Consensus 86 ~~~~~~~~~~~~~~-~~-~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~ 163 (392)
T PRK08773 86 WDAGGGGELGFDAD-TL-GREQLGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDADRVRLRLDDGRRLEAALAIA 163 (392)
T ss_pred EeCCCCceEEechh-cc-CCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCCCEEEeCEEEE
Confidence 11 011222211 11 11223567899999999999999999999999999999988888999888888999999999
Q ss_pred ecCCChHHHhHhcCCCC---CCceeeEEEEeeeccCCCcc-eeEEccCCcccccCCCCceEEEEEccCCCCCCccEEEEE
Q 007945 256 AMGNFSPVVKQIRSGRK---PDGVCLVVGSCARGFKDNST-SDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMF 331 (584)
Q Consensus 256 ADG~~S~v~rql~~~~~---~~~~~~~vg~~a~g~~~~~~-~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~L~ 331 (584)
|||.+|.++++++...+ +...+.+. ......+.... .+.+.. .+.+. .+|.+++ ...+.+
T Consensus 164 AdG~~S~vr~~~g~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~-----------~g~~~-~lP~~~~---~~~~~w 227 (392)
T PRK08773 164 ADGAASTLRELAGLPVSRHDYAQRGVVA-FVDTEHPHQATAWQRFLP-----------TGPLA-LLPFADG---RSSIVW 227 (392)
T ss_pred ecCCCchHHHhhcCCceEEEeccEEEEE-EEEccCCCCCEEEEEeCC-----------CCcEE-EEECCCC---ceEEEE
Confidence 99999999998865432 11111110 00001111111 111111 11122 3565543 222222
Q ss_pred EccCCCCC---CccHHHHHHHHHhhCcccccccCCceeEEEEEeeeeccccCCCCCccCCCEEEeCCCCCCcCCCCCCch
Q 007945 332 TYIDPQAG---SPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGF 408 (584)
Q Consensus 332 ~~~~~~~~---~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLvGDAA~~v~PltGgG~ 408 (584)
.+...... ..+..+..+++.+.++.. ++.++.... ...+|.+.....++..+|++|+|||||.+||+.|||+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~-~~~~~l~~~~~~~~~~~rv~LiGDAAH~~~P~~GqG~ 302 (392)
T PRK08773 228 TLPDAEAERVLALDEAAFSRELTQAFAAR----LGEVRVASP-RTAFPLRRQLVQQYVSGRVLTLGDAAHVVHPLAGQGV 302 (392)
T ss_pred ECCHHHHHHHHcCCHHHHHHHHHHHHhhh----hcCeEecCC-ccEeechhhhhhhhcCCcEEEEechhhcCCCchhchh
Confidence 22110000 001111122222221111 112221111 1245665444457788999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhchhhh
Q 007945 409 GSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPN 445 (584)
Q Consensus 409 g~~lr~~~~La~~i~~AL~~~~ls~~~l~~L~~Ye~~ 445 (584)
|++++|+..|++.|.++++.+. +......|++|++.
T Consensus 303 n~al~Da~~La~~L~~~~~~~~-~~~~~~~l~~y~~~ 338 (392)
T PRK08773 303 NLGLRDVAALQQLVRQAHARRA-DWAAPHRLQRWART 338 (392)
T ss_pred hhhHHHHHHHHHHHHHHHhcCC-CcccHHHHHHHHHH
Confidence 9999999999999999886542 22334457888875
No 14
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=99.96 E-value=3.3e-28 Score=260.27 Aligned_cols=356 Identities=20% Similarity=0.306 Sum_probs=227.8
Q ss_pred cEEEEcc-hHHHHHHHHH--HhCCCeEEEEcCCCCC--CCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeee
Q 007945 112 DVIVCGG-TLGIFIATAL--SFKGLRVAIVERNTLK--GREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF 186 (584)
Q Consensus 112 DVVIVGG-g~Gl~~Aa~L--Ar~GlrVlLIEr~~~~--~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f 186 (584)
||||||| ++|+++|..| ++.|++|+|||+++.. ...+.|..+...+.. +++++.+.|+...+.+
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~-----------~~~~v~~~w~~~~v~~ 69 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGP-----------LDSLVSHRWSGWRVYF 69 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccc-----------hHHHHheecCceEEEe
Confidence 8999995 5799999999 8889999999998876 344567655433221 3566778888777777
Q ss_pred cCCCccccccccc-ceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChHHHh
Q 007945 187 EGKGEIWVEDILN-LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVK 265 (584)
Q Consensus 187 ~~~~~l~~~~~l~-~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~v~r 265 (584)
.+....... .. +.|++..|++.|.+++. ++++++.+++|++++.+++++.|.+++|++++|++||||+|..|+..+
T Consensus 70 ~~~~~~~~~--~~Y~~i~~~~f~~~l~~~~~-~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~~~~~ 146 (374)
T PF05834_consen 70 PDGSRILID--YPYCMIDRADFYEFLLERAA-AGGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSSPKAR 146 (374)
T ss_pred CCCceEEcc--cceEEEEHHHHHHHHHHHhh-hCCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCccccccc
Confidence 654332221 22 36999999999999998 667788999999999998888899999999999999999998877332
Q ss_pred HhcCCCCCCceeeEEEEeee---c-cCCCcceeEEccCCcccccCCCCceEEEEEccCCCCCCccEEEEEEccCCCC--C
Q 007945 266 QIRSGRKPDGVCLVVGSCAR---G-FKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQA--G 339 (584)
Q Consensus 266 ql~~~~~~~~~~~~vg~~a~---g-~~~~~~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~L~~~~~~~~--~ 339 (584)
.... .. .+|.... . |+ .+.. .+.+.. +.. ...+.+++| +.|.++++ ...=+++-...+ .
T Consensus 147 ~~~~-Q~------f~G~~v~~~~~~f~-~~~~-~lMD~r-~~~-~~~~~~F~Y-~lP~~~~~---alvE~T~fs~~~~~~ 211 (374)
T PF05834_consen 147 PLGL-QH------FYGWEVETDEPVFD-PDTA-TLMDFR-VPQ-SADGPSFLY-VLPFSEDR---ALVEETSFSPRPALP 211 (374)
T ss_pred cccc-ce------eEEEEEeccCCCCC-CCce-EEEEec-ccC-CCCCceEEE-EEEcCCCe---EEEEEEEEcCCCCCC
Confidence 2210 11 1222221 1 21 1111 122221 111 001357777 78988652 111112111111 1
Q ss_pred CccHHHHHHHHHhhCcccccccCCceeEEEEEeeeeccccCCCCCccCCCEEEeCCCCCCcCCCCCCchhhHHHHHHHHH
Q 007945 340 SPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLS 419 (584)
Q Consensus 340 ~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLvGDAA~~v~PltGgG~g~~lr~~~~La 419 (584)
...+++.+.+|++.+ + +...++.+.+.|.||+......+...++++.+|+||+++||.||++|..+++.+..+|
T Consensus 212 ~~~~~~~l~~~l~~~----g--~~~~~i~~~E~G~IPm~~~~~~~~~~~~v~~iG~agG~v~PsTGYs~~~~~~~a~~ia 285 (374)
T PF05834_consen 212 EEELKARLRRYLERL----G--IDDYEILEEERGVIPMTTGGFPPRFGQRVIRIGTAGGMVKPSTGYSFARIQRQADAIA 285 (374)
T ss_pred HHHHHHHHHHHHHHc----C--CCceeEEEeecceeecccCCCccccCCCeeeEEccccCCCCcccHHHHHHHHHHHHHH
Confidence 124555555565542 2 3456678889999999654555667788999999999999999999998888766666
Q ss_pred HHHHHHHhCCCCChhhhHhhhchhhhhhHHHHHHHHhhccccCCCChHHHHHHHHHHHHHHHhcCCcccccccccccchh
Q 007945 420 TGVYEAVRGDFVDSYSLSLLNPYMPNLSASWLFQRAMSAKQQSDVSPDFINELLYVNFQCMQKLGDPVLRPFLQDVIKFG 499 (584)
Q Consensus 420 ~~i~~AL~~~~ls~~~l~~L~~Ye~~~~~~~~l~k~m~~~~~~~~~~~~in~ll~~~f~~~~~lp~~~~~~fl~d~~~~~ 499 (584)
+.+.+. ..+......+.+-.. +...+ |-+.+......+++++ ....||..|++||.+.+..||.++.++.
T Consensus 286 ~~l~~~----~~~~~~~~~~~~~~~-~~~~~-flr~l~~~~l~~~~~~----~~~~f~~~f~~l~~~~~~~FL~~~~~~~ 355 (374)
T PF05834_consen 286 DALAKG----GAPLRAWSPLWPRER-WRDRR-FLRVLGLEVLLRLPPD----GRRIFFRMFFRLPPDRIARFLSERSSLA 355 (374)
T ss_pred HHHhhc----cccccccccccHHHH-HHHHH-HHHHhcchhhcccChh----HHHHHHHHHhCCCHHHHHhHhcCCCCHH
Confidence 555432 111111111111111 11111 2222222222222333 5677788888999999999999999999
Q ss_pred HHHHHHHHHHHhC
Q 007945 500 PLAKTLGLVMLNK 512 (584)
Q Consensus 500 ~l~~~~~~~~~~~ 512 (584)
+..++|+.+++..
T Consensus 356 ~~~~i~~~~p~~p 368 (374)
T PF05834_consen 356 DDLRIMLALPKRP 368 (374)
T ss_pred HHHHHHHhCCCcC
Confidence 9999998776543
No 15
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.96 E-value=1.1e-27 Score=260.65 Aligned_cols=325 Identities=15% Similarity=0.195 Sum_probs=194.1
Q ss_pred CCccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCccc--ccCCHHHHHHHHHcCCCcccccchhhhcc---c--C
Q 007945 109 GTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQE--WNISRKELLELVESGILVEDDIDEATATK---F--N 180 (584)
Q Consensus 109 ~~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~--w~Is~~~l~~L~~lGl~~~~ele~~i~~~---~--~ 180 (584)
++|||||||| |+|+++|+.||++|++|+||||++.++.+.. ..++...++.+.. ++.....++..+..+ + .
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~-~~~~~~~~~~~~~~~~~~~~~~ 82 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIP-GFADSAPVERLITHEKLAFMTE 82 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHHhh-hhhhcCcccceeeeeeEEEEcC
Confidence 3699999995 6799999999999999999999998775422 1244444444321 111111112211110 0 0
Q ss_pred Cce--eeecCCCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecC
Q 007945 181 PNR--CGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMG 258 (584)
Q Consensus 181 ~~~--v~f~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG 258 (584)
... +.|... ....+....+.+++..|+++|.+++.+.|++++.+++|+++..+++.+++...+|.+++|++||+|||
T Consensus 83 ~~~~~~~~~~~-~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~~~g~~i~A~~VI~A~G 161 (428)
T PRK10157 83 KSAMTMDYCNG-DETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILADG 161 (428)
T ss_pred CCceeeccccc-cccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEEcCCcEEECCEEEEEeC
Confidence 011 111111 11111223467899999999999999999999999999999887777654445677899999999999
Q ss_pred CChHHHhHhcCCCC--CCceeeEEEEeeeccCC-----------C-cceeEEccCCcccccCCCCceEEEEEccCCCCCC
Q 007945 259 NFSPVVKQIRSGRK--PDGVCLVVGSCARGFKD-----------N-STSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPL 324 (584)
Q Consensus 259 ~~S~v~rql~~~~~--~~~~~~~vg~~a~g~~~-----------~-~~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~ 324 (584)
.+|.++++++...+ +..+...+..... .+. . ....++... +.. + .-++.| .|+..+.
T Consensus 162 ~~s~l~~~lgl~~~~~~~~~av~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~g~-~~~---g-~~ggG~-~~~~~~~-- 232 (428)
T PRK10157 162 VNSILAEKLGMAKRVKPTDVAVGVKELIE-LPKSVIEDRFQLQGNQGAACLFAGS-PTD---G-LMGGGF-LYTNENT-- 232 (428)
T ss_pred CCHHHHHHcCCCCCCCCcEEEEEEEEEEE-cCHHHHHHhhccCCCCCeEEEEEEC-CCC---C-CcCcee-EEEcCCe--
Confidence 99999998765432 2222221111111 110 0 001111111 100 0 011234 3555432
Q ss_pred ccEEEEEEccC-CCCCCccHHHHHHHHHhhCcccccccCCceeEEEEEeeeeccccCC-CCCccCCCEEEeCCCCCCcCC
Q 007945 325 DRTTYMFTYID-PQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDS-PLPAAFNRILQFGDASGIQSP 402 (584)
Q Consensus 325 ~~~~~L~~~~~-~~~~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~-~~~~~~~rvlLvGDAA~~v~P 402 (584)
...++....+ ......+..+++++| ...|..+.. +...+........+|..... ..+.+.+++++|||||++++|
T Consensus 233 -~svG~~~~~~~~~~~~~~~~~~l~~~-~~~p~v~~~-~~~~~~~~~~~~~ip~~g~~~~~~~~~~g~llvGDAAg~v~p 309 (428)
T PRK10157 233 -LSLGLVCGLHHLHDAKKSVPQMLEDF-KQHPAVAPL-IAGGKLVEYSAHVVPEAGINMLPELVGDGVLIAGDAAGMCMN 309 (428)
T ss_pred -EEEEEEEehHHhcccCCCHHHHHHHH-HhCchHHHH-hCCCeEHHHHhhHhhcCCcccCCceecCCeEEEecccccccc
Confidence 3333332211 111223666777665 445544322 11111111122335543211 225678999999999999999
Q ss_pred C--CCCchhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhchhhhhhHHH
Q 007945 403 V--SFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLSASW 450 (584)
Q Consensus 403 l--tGgG~g~~lr~~~~La~~i~~AL~~~~ls~~~l~~L~~Ye~~~~~~~ 450 (584)
+ +|.|+..++..+..+|+.+.++++.++.++.. |..|+..++..+
T Consensus 310 ~g~~g~Gi~~A~~SG~lAAeai~~a~~~~~~s~~~---l~~Y~~~l~~~~ 356 (428)
T PRK10157 310 LGFTIRGMDLAIAAGEAAAKTVLSAMKSDDFSKQK---LAEYRQHLESGP 356 (428)
T ss_pred cCceeeeHHHHHHHHHHHHHHHHHHHhcCCcchhh---HHHHHHHHHHhH
Confidence 5 99999999999999999999999988877777 677888777663
No 16
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.96 E-value=8.4e-28 Score=257.61 Aligned_cols=310 Identities=20% Similarity=0.192 Sum_probs=193.6
Q ss_pred CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhh---cccCC-c--
Q 007945 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATA---TKFNP-N-- 182 (584)
Q Consensus 110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~---~~~~~-~-- 182 (584)
.|||||||| ++|+++|..|+++|++|+||||.+.+...+.+.++..+++.|.++|+|++..-..... .-++. .
T Consensus 7 ~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~~~r~~~l~~~s~~~l~~lgl~~~~~~~~~~~~~~~~~~~~g~~ 86 (388)
T PRK07494 7 HTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYADLRTTALLGPSIRFLERLGLWARLAPHAAPLQSMRIVDATGRL 86 (388)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCCCcchhhCcHHHHHHHHHhCchhhhHhhcceeeEEEEEeCCCCC
Confidence 589999996 5799999999999999999999987665677788888999999999986422100000 00000 0
Q ss_pred ----eeeecCCCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecC
Q 007945 183 ----RCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMG 258 (584)
Q Consensus 183 ----~v~f~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG 258 (584)
...|.. ..+ ....+++.+++..+.+.|.+++.+.++..+.+++|++++.++++++|++++|++++||+||+|||
T Consensus 87 ~~~~~~~~~~-~~~-~~~~~g~~i~~~~l~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG 164 (388)
T PRK07494 87 IRAPEVRFRA-AEI-GEDAFGYNIPNWLLNRALEARVAELPNITRFGDEAESVRPREDEVTVTLADGTTLSARLVVGADG 164 (388)
T ss_pred CCCceEEEcH-Hhc-CCCccEEEeEhHHHHHHHHHHHhcCCCcEEECCeeEEEEEcCCeEEEEECCCCEEEEeEEEEecC
Confidence 011110 000 11234567899999999999998887655889999999988899999988888999999999999
Q ss_pred CChHHHhHhcCCC---CCCceeeEEEEeeeccCCCcc-eeEEccCCcccccCCCCceEEEEEccCCCCCCccEEEEEEcc
Q 007945 259 NFSPVVKQIRSGR---KPDGVCLVVGSCARGFKDNST-SDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYI 334 (584)
Q Consensus 259 ~~S~v~rql~~~~---~~~~~~~~vg~~a~g~~~~~~-~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~L~~~~ 334 (584)
.+|.++++++... .+...+.++. .....+.... .+++. + .+.++ .+|.+++ ...+++...
T Consensus 165 ~~S~vr~~~g~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~------~-----~g~~~-~~Pl~~~---~~~~v~~~~ 228 (388)
T PRK07494 165 RNSPVREAAGIGVRTWSYPQKALVLN-FTHSRPHQNVSTEFHT------E-----GGPFT-QVPLPGR---RSSLVWVVR 228 (388)
T ss_pred CCchhHHhcCCCceecCCCCEEEEEE-EeccCCCCCEEEEEeC------C-----CCcEE-EEECCCC---cEEEEEECC
Confidence 9999999986542 2233332211 1111111111 12211 1 22333 4677643 233333221
Q ss_pred CCCC---CCccHHHHHHHHHhhCcccccccCCceeEEEEEeeeeccccCCCCCccCCCEEEeCCCCCCcCCCCCCchhhH
Q 007945 335 DPQA---GSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSL 411 (584)
Q Consensus 335 ~~~~---~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLvGDAA~~v~PltGgG~g~~ 411 (584)
.... ...+.+++.+.+.+.++.. ++.++... ....+|+....+.++..+|++|+|||||.+||++|||+|++
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~-~~~~~~l~~~~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~~ 303 (388)
T PRK07494 229 PAEAERLLALSDAALSAAIEERMQSM----LGKLTLEP-GRQAWPLSGQVAHRFAAGRTALVGEAAHVFPPIGAQGLNLG 303 (388)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhh----cCCeEEcc-CCcEeechHHHHHhhccCceEEEEhhhhcCCchhhcccchh
Confidence 1000 0012222222222222221 12222111 12346665444446778999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCChhhhHhhhchhhhh
Q 007945 412 TRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNL 446 (584)
Q Consensus 412 lr~~~~La~~i~~AL~~~~ls~~~l~~L~~Ye~~~ 446 (584)
++|+..|++.|.... .+..+ .+.|+.|+...
T Consensus 304 l~Da~~La~~L~~~~-~~~~~---~~~L~~Y~~~R 334 (388)
T PRK07494 304 LRDVATLVEIVEDRP-EDPGS---AAVLAAYDRAR 334 (388)
T ss_pred HHHHHHHHHHHHhcC-CCcch---HHHHHHHHHHH
Confidence 999999999987632 12112 23477888754
No 17
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.96 E-value=6.4e-28 Score=260.20 Aligned_cols=314 Identities=14% Similarity=0.097 Sum_probs=190.2
Q ss_pred CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCC---------CCcccccCCHHHHHHHHHcCCCcccccchhhhcc-
Q 007945 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLK---------GREQEWNISRKELLELVESGILVEDDIDEATATK- 178 (584)
Q Consensus 110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~---------~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~- 178 (584)
.|||+|||| ++|+++|+.|+++|++|+||||++.. ..++...+++..++.|..+|+++.. .......
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l--~~~~~~~~ 79 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGI--AARRASPY 79 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhh--hHhhCccc
Confidence 589999996 57999999999999999999998731 1224456889999999999998542 1100000
Q ss_pred -----cCC---ceeeecCCCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEc
Q 007945 179 -----FNP---NRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSS 250 (584)
Q Consensus 179 -----~~~---~~v~f~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~A 250 (584)
++. ..+.|... .... ..+++.+++..|.+.|.+++.+.|++++.++++++++.++++++|++.+|++++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~-~~~~-~~~g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a 157 (405)
T PRK05714 80 SEMQVWDGSGTGQIHFSAA-SVHA-EVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGRQLRA 157 (405)
T ss_pred eeEEEEcCCCCceEEeccc-ccCC-CccEEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEe
Confidence 111 11222211 1111 1234568888999999999988899999999999999888899999888889999
Q ss_pred cEEEEecCCChHHHhHhcCCCCC---CceeeEEEEeeeccCCCcceeEEccCCcccccCCCCceEEEEEccCCCCCCccE
Q 007945 251 HLIIDAMGNFSPVVKQIRSGRKP---DGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRT 327 (584)
Q Consensus 251 rlVIdADG~~S~v~rql~~~~~~---~~~~~~vg~~a~g~~~~~~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~ 327 (584)
++||+|||.+|.+|++++...+. ...+.+. . .. .+.......+... .+ .+.++ .+|.+.+.....
T Consensus 158 ~~vVgAdG~~S~vR~~lg~~~~~~~~~~~~~~~-~-~~-~~~~~~~~~~~~~---~~-----~g~~~-~~P~~~~~~~~~ 225 (405)
T PRK05714 158 PLVVAADGANSAVRRLAGCATREWDYLHHAIVT-S-VR-CSEPHRATAWQRF---TD-----DGPLA-FLPLERDGDEHW 225 (405)
T ss_pred CEEEEecCCCchhHHhcCCCcccccCCceEEEE-E-EE-cCCCCCCEEEEEc---CC-----CCCeE-EeeCCCCCCCCe
Confidence 99999999999999998754322 1222111 1 10 0100000000000 00 12333 467653211111
Q ss_pred EEEEEccC-CCCC---CccHHHHHHHHHhhCcccccccCCceeEEEEEeeeeccccCCCCCccCCCEEEeCCCCCCcCCC
Q 007945 328 TYMFTYID-PQAG---SPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPV 403 (584)
Q Consensus 328 ~~L~~~~~-~~~~---~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLvGDAA~~v~Pl 403 (584)
..++.... .... ..+.+++.+++.+.++.. +.++..... ...+|++.....++..+|++|+|||||.+||+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~-~~~~~l~~~~~~~~~~~rv~LlGDAAH~~~P~ 300 (405)
T PRK05714 226 CSIVWSTTPEEAERLMALDDDAFCAALERAFEGR----LGEVLSADP-RLCVPLRQRHAKRYVEPGLALIGDAAHTIHPL 300 (405)
T ss_pred EEEEEECCHHHHHHHHCCCHHHHHHHHHHHHHHH----hCCceecCC-ccEEecceeehhhhccCCEEEEEeccccCCCc
Confidence 22222111 0000 001112222222222110 111110111 12356654444577889999999999999999
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHhCCC-CChhhhHhhhchhhhh
Q 007945 404 SFGGFGSLTRHLGRLSTGVYEAVRGDF-VDSYSLSLLNPYMPNL 446 (584)
Q Consensus 404 tGgG~g~~lr~~~~La~~i~~AL~~~~-ls~~~l~~L~~Ye~~~ 446 (584)
.|||+|++++|+..|++.|..++..+. .+. .+.|+.|+..-
T Consensus 301 ~GQG~n~al~DA~~La~~L~~~~~~g~~~~~--~~~L~~Ye~~R 342 (405)
T PRK05714 301 AGQGVNLGFLDAAVLAEVLLHAAERGERLAD--VRVLSRFERRR 342 (405)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhcCCCccc--HHHHHHHHHHH
Confidence 999999999999999999988876542 221 23477787643
No 18
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=99.96 E-value=1.9e-27 Score=259.48 Aligned_cols=316 Identities=18% Similarity=0.187 Sum_probs=190.4
Q ss_pred ccEEEEcc-hHHHHHHHHHHh----CCCeEEEEcCCCCCC-------------CcccccCCHHHHHHHHHcCCCcccccc
Q 007945 111 FDVIVCGG-TLGIFIATALSF----KGLRVAIVERNTLKG-------------REQEWNISRKELLELVESGILVEDDID 172 (584)
Q Consensus 111 yDVVIVGG-g~Gl~~Aa~LAr----~GlrVlLIEr~~~~~-------------~~r~w~Is~~~l~~L~~lGl~~~~ele 172 (584)
|||+|||| ++|+++|+.|++ +|++|+||||++.+. ..+...|++.+++.|..+|+|+...-.
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~~ 80 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQSD 80 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhhh
Confidence 79999996 579999999998 899999999965332 124567899999999999998652111
Q ss_pred hhh-h---cccCC---ceeeecCCCcccccccccceeCHHHHHHHHHHHHHhCC---CEEEeCceEEEEEEe-------C
Q 007945 173 EAT-A---TKFNP---NRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLG---GVIFEGYSVSSICTY-------E 235 (584)
Q Consensus 173 ~~i-~---~~~~~---~~v~f~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G---~~i~~~t~v~~v~~~-------~ 235 (584)
... . ..++. ..+.|.... ....+++.+++..|.+.|.+++.+.+ ++++.+++|++++.+ +
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~ 157 (437)
T TIGR01989 81 RIQPFGRMQVWDGCSLALIRFDRDN---GKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNS 157 (437)
T ss_pred cCCceeeEEEecCCCCceEEeecCC---CCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCC
Confidence 000 0 00111 112222211 11233567899999999999998875 799999999999753 4
Q ss_pred CeEEEEEcCCcEEEccEEEEecCCChHHHhHhcCCC---CCCceeeEEEEeeeccCC-CcceeEEccCCcccccCCCCce
Q 007945 236 NAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIRSGR---KPDGVCLVVGSCARGFKD-NSTSDVIYSSSSVKKVGDSEVQ 311 (584)
Q Consensus 236 ~gv~V~~~~G~~i~ArlVIdADG~~S~v~rql~~~~---~~~~~~~~vg~~a~g~~~-~~~~di~~~~~~~~~~~~~~~~ 311 (584)
++++|++.+|++++|++||+|||.+|.+|++++... .+.+.+.+........+. +...+.+.. .+
T Consensus 158 ~~v~v~~~~g~~i~a~llVgADG~~S~vR~~~gi~~~g~~y~q~~~v~~v~~~~~~~~~~~~~~f~~-----------~g 226 (437)
T TIGR01989 158 NWVHITLSDGQVLYTKLLIGADGSNSNVRKAANIDTTGWNYNQHAVVATLKLEEATENDVAWQRFLP-----------TG 226 (437)
T ss_pred CceEEEEcCCCEEEeeEEEEecCCCChhHHHcCCCccceeeccEEEEEEEEcccCCCCCeEEEEECC-----------CC
Confidence 678899989999999999999999999999987543 233333221111111111 111122211 12
Q ss_pred EEEEEccCCCCCCccEEEEEEccCCCC------CCccHHHHHHHHHh----hCcc-------------ccccc-------
Q 007945 312 LFWEAFPAGSGPLDRTTYMFTYIDPQA------GSPKLEELLERYWD----LMPE-------------YQGVT------- 361 (584)
Q Consensus 312 ~~W~~fP~~~g~~~~~~~L~~~~~~~~------~~~~l~~l~~~~~~----~lp~-------------~~~~~------- 361 (584)
.++ .+|.+++ ....++....... ....+.+.+.+.+. ..|. ..+..
T Consensus 227 ~~~-~lPl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~ 302 (437)
T TIGR01989 227 PIA-LLPLPDN---NSTLVWSTSPEEALRLLSLPPEDFVDALNAAFDLGYSDHPYSYLLDYAMEKLNEDIGFRTEGSKSC 302 (437)
T ss_pred CEE-EeECCCC---CEEEEEeCCHHHHHHHHcCCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccc
Confidence 233 3566543 2222222211000 00122222211110 0000 00000
Q ss_pred --CCc--eeEEEEEeeeeccccCCCCCccCCCEEEeCCCCCCcCCCCCCchhhHHHHHHHHHHHHHHHHhCCCCChhhhH
Q 007945 362 --LDN--LEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLS 437 (584)
Q Consensus 362 --l~~--~~~~~~~~g~~P~~~~~~~~~~~~rvlLvGDAA~~v~PltGgG~g~~lr~~~~La~~i~~AL~~~~ls~~~l~ 437 (584)
... .++.......+|+....+.++..+|++|+|||||.+||++|||+|++++|+..|++.|.++++.+. +....+
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~l~GDAAH~~~P~~GqG~n~~l~Da~~La~~L~~~~~~~~-~~~~~~ 381 (437)
T TIGR01989 303 FQVPPRVIGVVDKSRAAFPLGLGHADEYVTKRVALVGDAAHRVHPLAGQGVNLGFGDVASLVKALAEAVSVGA-DIGSIS 381 (437)
T ss_pred cccCchhheeecccceeEEecccchhhccCCCEEEEchhhcCCCCChhhhHHHHHHHHHHHHHHHHHHHhcCC-ChhHHH
Confidence 000 011111124566654455577889999999999999999999999999999999999999887542 222223
Q ss_pred hhhchhhh
Q 007945 438 LLNPYMPN 445 (584)
Q Consensus 438 ~L~~Ye~~ 445 (584)
.|+.|+..
T Consensus 382 ~L~~Y~~~ 389 (437)
T TIGR01989 382 SLKPYERE 389 (437)
T ss_pred HHHHHHHH
Confidence 46777764
No 19
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=99.96 E-value=1.2e-27 Score=258.41 Aligned_cols=313 Identities=18% Similarity=0.132 Sum_probs=190.2
Q ss_pred CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCC-CCC-----CcccccCCHHHHHHHHHcCCCcccccc-hhhh---cc
Q 007945 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNT-LKG-----REQEWNISRKELLELVESGILVEDDID-EATA---TK 178 (584)
Q Consensus 110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~-~~~-----~~r~w~Is~~~l~~L~~lGl~~~~ele-~~i~---~~ 178 (584)
.|||+|||| ++|+++|+.|+++|++|+|||++. .+. ..+...++.++++.|.++|+++...-. .... ..
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~ 83 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAAPYIAMEV 83 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCCcccEEEE
Confidence 589999996 579999999999999999999973 211 234457899999999999998652100 0000 01
Q ss_pred cCC---ceeeecCCCcccccccccceeCHHHHHHHHHHHHHhC-CCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEE
Q 007945 179 FNP---NRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLII 254 (584)
Q Consensus 179 ~~~---~~v~f~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~-G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVI 254 (584)
|+. ..+.|... .... ..+++.+++..|.+.|.+++.+. |++++.+++|+++..+++++.|++++|++++|++||
T Consensus 84 ~~~~~~~~~~~~~~-~~~~-~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~a~lvI 161 (405)
T PRK08850 84 WEQDSFARIEFDAE-SMAQ-PDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGESEAWLTLDNGQALTAKLVV 161 (405)
T ss_pred EeCCCCceEEEecc-ccCC-CccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCeEEEEECCCCEEEeCEEE
Confidence 111 12223211 1111 12345688888999999998875 689999999999998888999999899999999999
Q ss_pred EecCCChHHHhHhcCCCC---CCceeeEEEEeeeccCCCcceeEEccCCcccccCCCCceEEEEEccCCCCCCccEEEEE
Q 007945 255 DAMGNFSPVVKQIRSGRK---PDGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMF 331 (584)
Q Consensus 255 dADG~~S~v~rql~~~~~---~~~~~~~vg~~a~g~~~~~~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~L~ 331 (584)
+|||.+|.+|++++.... +...+.+ +......+.+.....++. + .+.+. .+|..++. .....+
T Consensus 162 gADG~~S~vR~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~-----~-----~g~~~-~lp~~~~~--~~~~~w 227 (405)
T PRK08850 162 GADGANSWLRRQMDIPLTHWDYGHSALV-ANVRTVDPHNSVARQIFT-----P-----QGPLA-FLPMSEPN--MSSIVW 227 (405)
T ss_pred EeCCCCChhHHHcCCCeeEEeeccEEEE-EEEEccCCCCCEEEEEEc-----C-----CCceE-EEECCCCC--eEEEEE
Confidence 999999999999875432 2223321 111111111111111111 0 12222 35665431 222222
Q ss_pred EccCCCCC---CccHHHHHHHHHhhCcccccccCCceeEEEEEeeeeccccCCCCCccCCCEEEeCCCCCCcCCCCCCch
Q 007945 332 TYIDPQAG---SPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGF 408 (584)
Q Consensus 332 ~~~~~~~~---~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLvGDAA~~v~PltGgG~ 408 (584)
........ ..+.++..++..+.++.. +..++.... ...+|.......++..+|++|+|||||.+||+.|||+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~-~~~~pl~~~~~~~~~~~rv~LiGDAAH~~~P~~GQG~ 302 (405)
T PRK08850 228 STEPLRAEALLAMSDEQFNKALTAEFDNR----LGLCEVVGE-RQAFPLKMRYARDFVRERVALVGDAAHTIHPLAGQGV 302 (405)
T ss_pred ECCHHHHHHHHcCCHHHHHHHHHHHHhhh----hCcEEEccc-ccEEecceeeccccccCcEEEEEhhhhcCCccccccH
Confidence 22110000 001112222222222110 112221111 1245655444457788999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhchhh
Q 007945 409 GSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMP 444 (584)
Q Consensus 409 g~~lr~~~~La~~i~~AL~~~~ls~~~l~~L~~Ye~ 444 (584)
|++++|+..|++.|..++..+. +......|+.|+.
T Consensus 303 n~ai~Da~~La~~L~~~~~~~~-~~~~~~~L~~Y~~ 337 (405)
T PRK08850 303 NLGLLDAASLAQEILALWQQGR-DIGLKRNLRGYER 337 (405)
T ss_pred HHHHHHHHHHHHHHHHHHhcCC-CcchHHHHHHHHH
Confidence 9999999999999998875432 2222234677775
No 20
>PRK06185 hypothetical protein; Provisional
Probab=99.96 E-value=3.9e-27 Score=254.01 Aligned_cols=311 Identities=15% Similarity=0.097 Sum_probs=192.6
Q ss_pred CCccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC-CcccccCCHHHHHHHHHcCCCcccccchhhhccc-------
Q 007945 109 GTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG-REQEWNISRKELLELVESGILVEDDIDEATATKF------- 179 (584)
Q Consensus 109 ~~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~-~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~------- 179 (584)
.+|||+|||| ++|+++|+.|+++|++|+|||+++... ..+...+++.+++.|..+|+|++. .......+
T Consensus 5 ~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~--~~~~~~~~~~~~~~~ 82 (407)
T PRK06185 5 ETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERF--LELPHQKVRTLRFEI 82 (407)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHH--hhcccceeeeEEEEE
Confidence 3699999996 579999999999999999999986432 234557888999999999998642 11100001
Q ss_pred CCce---eeecCCCcccccccccceeCHHHHHHHHHHHHHhC-CCEEEeCceEEEEEEeCCeEE---EEEcCCc-EEEcc
Q 007945 180 NPNR---CGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAV---LLLAEGK-ILSSH 251 (584)
Q Consensus 180 ~~~~---v~f~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~-G~~i~~~t~v~~v~~~~~gv~---V~~~~G~-~i~Ar 251 (584)
.... +.|.. ...+..+.+.+++..+.+.|.+++.+. |++++.+++++++..+++.++ ++..+|+ +++|+
T Consensus 83 ~~~~~~~~~~~~---~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~~v~~v~~~~~~g~~~i~a~ 159 (407)
T PRK06185 83 GGRTVTLADFSR---LPTPYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEEGGRVTGVRARTPDGPGEIRAD 159 (407)
T ss_pred CCeEEEecchhh---cCCCCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEcCCCcEEEEeC
Confidence 0111 11111 111122344588889999999998775 789999999999988877653 3334564 79999
Q ss_pred EEEEecCCChHHHhHhcCCCC---CCceeeEEEEeeeccCCCcceeEEccCCcccccCCCCceEEEEEccCCCCCCccEE
Q 007945 252 LIIDAMGNFSPVVKQIRSGRK---PDGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTT 328 (584)
Q Consensus 252 lVIdADG~~S~v~rql~~~~~---~~~~~~~vg~~a~g~~~~~~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~ 328 (584)
+||+|||.+|.++++++...+ +...+..+. ... +....... + .... ..++++ .+|.+ + ...
T Consensus 160 ~vI~AdG~~S~vr~~~gi~~~~~~~~~~~~~~~--~~~-~~~~~~~~-~--~~~~-----~~g~~~-llP~~-~---~~~ 223 (407)
T PRK06185 160 LVVGADGRHSRVRALAGLEVREFGAPMDVLWFR--LPR-EPDDPESL-M--GRFG-----PGQGLI-MIDRG-D---YWQ 223 (407)
T ss_pred EEEECCCCchHHHHHcCCCccccCCCceeEEEe--cCC-CCCCCccc-c--eEec-----CCcEEE-EEcCC-C---eEE
Confidence 999999999999998875432 222211110 000 00000000 0 0011 134555 46765 3 222
Q ss_pred EEEEccCCCCC---CccHHHHHHHHHhhCcccccccCCceeEEEEEeeeeccccCCCCCccCCCEEEeCCCCCCcCCCCC
Q 007945 329 YMFTYIDPQAG---SPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSF 405 (584)
Q Consensus 329 ~L~~~~~~~~~---~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLvGDAA~~v~PltG 405 (584)
..+........ ..+.+++.+++.+..|.+... ++.++.... ...+|+......++..+|++|+|||||.+||++|
T Consensus 224 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-l~~~~~~~~-~~~~~l~~~~~~~~~~~rv~LvGDAAh~~~P~~G 301 (407)
T PRK06185 224 CGYVIPKGGYAALRAAGLEAFRERVAELAPELADR-VAELKSWDD-VKLLDVRVDRLRRWHRPGLLCIGDAAHAMSPVGG 301 (407)
T ss_pred EEEEecCCCchhhhhhhHHHHHHHHHHhCccHHHH-HhhcCCccc-cEEEEEeccccccccCCCeEEEeccccccCcccc
Confidence 22222211111 113344444443444543321 222221111 1345655444557788999999999999999999
Q ss_pred CchhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhchhhh
Q 007945 406 GGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPN 445 (584)
Q Consensus 406 gG~g~~lr~~~~La~~i~~AL~~~~ls~~~l~~L~~Ye~~ 445 (584)
||+|++++|+..|++.|.++++.++.+. +.|+.|+..
T Consensus 302 qG~nlgl~Da~~La~~l~~~~~~~~~~~---~~L~~Y~~~ 338 (407)
T PRK06185 302 VGINLAIQDAVAAANILAEPLRRGRVSD---RDLAAVQRR 338 (407)
T ss_pred cchhHHHHHHHHHHHHHHHHhccCCccH---HHHHHHHHH
Confidence 9999999999999999999987764433 447788874
No 21
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.96 E-value=2.9e-27 Score=253.56 Aligned_cols=305 Identities=17% Similarity=0.186 Sum_probs=183.6
Q ss_pred CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC-------CcccccCCHHHHHHHHHcCCCcccccchh--hh--c
Q 007945 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG-------REQEWNISRKELLELVESGILVEDDIDEA--TA--T 177 (584)
Q Consensus 110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~-------~~r~w~Is~~~l~~L~~lGl~~~~ele~~--i~--~ 177 (584)
.|||+|||| ++|+++|+.|+++|++|+|+|+.+... ..+...+++.+++.|..+|+++...-... +. .
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~~~~ 82 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYKRLE 82 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccceEE
Confidence 489999996 579999999999999999999875321 12334689999999999999864210000 00 0
Q ss_pred ccC--CceeeecCCCcccccccccceeCHHHHHHHHHHHHHhC-CCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEE
Q 007945 178 KFN--PNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLII 254 (584)
Q Consensus 178 ~~~--~~~v~f~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~-G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVI 254 (584)
.+. .....|.. ..+.. ..+++.+++..|...|.+++.+. |++++.++++++++.++++++|++++|++++|++||
T Consensus 83 ~~~~~~~~~~~~~-~~~~~-~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~~~~lvI 160 (384)
T PRK08849 83 TWEHPECRTRFHS-DELNL-DQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEGNRVTLESGAEIEAKWVI 160 (384)
T ss_pred EEeCCCceEEecc-cccCC-CccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCeEEEEECCCCEEEeeEEE
Confidence 010 01111211 11111 12345577777888998888765 679999999999999899999999999999999999
Q ss_pred EecCCChHHHhHhcCCC---CCCceeeEEEEeeeccCCCcc-eeEEccCCcccccCCCCceEEEEEccCCCCCCccEEEE
Q 007945 255 DAMGNFSPVVKQIRSGR---KPDGVCLVVGSCARGFKDNST-SDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYM 330 (584)
Q Consensus 255 dADG~~S~v~rql~~~~---~~~~~~~~vg~~a~g~~~~~~-~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~L 330 (584)
+|||.+|++|++++.+. .+.+.+.++.. ....++.+. .+.+...++ .. ..|..++ ...++
T Consensus 161 gADG~~S~vR~~~gi~~~~~~~~~~~~v~~~-~~~~~~~~~~~~~~~~~g~----------~~--~~pl~~~---~~~~~ 224 (384)
T PRK08849 161 GADGANSQVRQLAGIGITAWDYRQHCMLINV-ETEQPQQDITWQQFTPSGP----------RS--FLPLCGN---QGSLV 224 (384)
T ss_pred EecCCCchhHHhcCCCceeccCCCeEEEEEE-EcCCCCCCEEEEEeCCCCC----------EE--EeEcCCC---ceEEE
Confidence 99999999999987542 22333322111 111111111 111111111 01 1344322 11111
Q ss_pred EEccCCCC----CCccHHHHHHHHHhhCcccccccCCceeEEEEEeeeeccccCCCCCccCCCEEEeCCCCCCcCCCCCC
Q 007945 331 FTYIDPQA----GSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFG 406 (584)
Q Consensus 331 ~~~~~~~~----~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLvGDAA~~v~PltGg 406 (584)
+ +..... ...+.++..+++.+.+|.. +..+++. ....+|+......++..+|++|+|||||.++|+.||
T Consensus 225 ~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~--~~~~~~l~~~~~~~~~~grv~LlGDAAH~~~P~~GQ 297 (384)
T PRK08849 225 W-YDSPKRIKQLSAMNPEQLRSEILRHFPAE----LGEIKVL--QHGSFPLTRRHAQQYVKNNCVLLGDAAHTINPLAGQ 297 (384)
T ss_pred E-ECCHHHHHHHHcCCHHHHHHHHHHHhhhh----hCcEEec--cceEeeccccccchhccCCEEEEEcccccCCCCccc
Confidence 1 111000 0002233333333334321 1223222 234566654344577889999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhchhhh
Q 007945 407 GFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPN 445 (584)
Q Consensus 407 G~g~~lr~~~~La~~i~~AL~~~~ls~~~l~~L~~Ye~~ 445 (584)
|+|++++|+..|++.+.. .+..+.. .|+.|+..
T Consensus 298 G~n~al~Da~~L~~~l~~---~~~~~~~---~L~~Ye~~ 330 (384)
T PRK08849 298 GVNLGFKDVDVLLAETEK---QGVLNDA---SFARYERR 330 (384)
T ss_pred hHhHHHHHHHHHHHHHHh---cCCCcHH---HHHHHHHH
Confidence 999999999998876642 2221222 37778764
No 22
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.96 E-value=5.8e-27 Score=252.09 Aligned_cols=312 Identities=21% Similarity=0.206 Sum_probs=191.5
Q ss_pred CccEEEEcc-hHHHHHHHHHHhCC--CeEEEEcCCCCCCC---cccccCCHHHHHHHHHcCCCcccccchhhhc--cc-C
Q 007945 110 TFDVIVCGG-TLGIFIATALSFKG--LRVAIVERNTLKGR---EQEWNISRKELLELVESGILVEDDIDEATAT--KF-N 180 (584)
Q Consensus 110 ~yDVVIVGG-g~Gl~~Aa~LAr~G--lrVlLIEr~~~~~~---~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~--~~-~ 180 (584)
.|||+|||| ++|+++|+.|+++| ++|+||||++.... .+...+++..++.|..+|+++...-...... .+ +
T Consensus 1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~ 80 (403)
T PRK07333 1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVITD 80 (403)
T ss_pred CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEEe
Confidence 389999996 57999999999995 99999999975432 3556799999999999999854211000000 00 0
Q ss_pred -----C---ceeeecCCCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccE
Q 007945 181 -----P---NRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHL 252 (584)
Q Consensus 181 -----~---~~v~f~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~Arl 252 (584)
. ..+.|.+. ......+.+.+++..|.+.|.+++.+.|++++.++++++++.+++++.|++.+|++++|++
T Consensus 81 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~ 158 (403)
T PRK07333 81 SRTSDPVRPVFLTFEGE--VEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLEARL 158 (403)
T ss_pred CCCCCCCccceEEeccc--ccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCE
Confidence 0 01122110 0001122346899999999999999999999999999999988889999988888999999
Q ss_pred EEEecCCChHHHhHhcCCCC---CCceeeEEEEeeeccCCCcceeEEccCCcccccCCCCceEEEEEccCCCCCCccEEE
Q 007945 253 IIDAMGNFSPVVKQIRSGRK---PDGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTY 329 (584)
Q Consensus 253 VIdADG~~S~v~rql~~~~~---~~~~~~~vg~~a~g~~~~~~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~ 329 (584)
||+|||.+|.++++++.... +...+.++ ......+.......++ . ..+++| .+|.+++ ...+
T Consensus 159 vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~-----~~g~~~-~~Pl~~~---~~~~ 223 (403)
T PRK07333 159 LVAADGARSKLRELAGIKTVGWDYGQSGIVC-TVEHERPHGGRAEEHF-----L-----PAGPFA-ILPLKGN---RSSL 223 (403)
T ss_pred EEEcCCCChHHHHHcCCCcccccCCCEEEEE-EEEcCCCCCCEEEEEe-----C-----CCCceE-EeECCCC---CeEE
Confidence 99999999999998865421 22222211 1111101111111111 1 134566 5898765 2333
Q ss_pred EEEccCCCCC---CccHHHHHHHHHhhCcccccccCCceeEEEEEeeeeccccCCCCCccCCCEEEeCCCCCCcCCCCCC
Q 007945 330 MFTYIDPQAG---SPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFG 406 (584)
Q Consensus 330 L~~~~~~~~~---~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLvGDAA~~v~PltGg 406 (584)
.+........ ........+...+.+... ++.++.... ...+|.......++..+|++|+|||||.++|++||
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~grv~LvGDAAH~~~P~~Gq 298 (403)
T PRK07333 224 VWTERTADAERLVALDDLVFEAELEQRFGHR----LGELKVLGK-RRAFPLGLTLARSFVAPRFALVGDAAHGIHPIAGQ 298 (403)
T ss_pred EEECCHHHHHHHHCCCHHHHHHHHHHHhhhh----cCceEeccC-ccEeechhhhhhhccCCCEEEEechhhcCCCcccc
Confidence 3322110000 001111111111111110 112211111 11344432233466789999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhchhh
Q 007945 407 GFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMP 444 (584)
Q Consensus 407 G~g~~lr~~~~La~~i~~AL~~~~ls~~~l~~L~~Ye~ 444 (584)
|++++++|+..|++.|..+++.+. +....+.|+.|+.
T Consensus 299 G~n~ai~Da~~La~~L~~~~~~~~-~~~~~~~L~~Ye~ 335 (403)
T PRK07333 299 GLNLGLKDVAALAEVVVEAARLGL-DIGSLDVLERYQR 335 (403)
T ss_pred chhhhHHHHHHHHHHHHHHHhcCC-CCCCHHHHHHHHH
Confidence 999999999999999999886432 1112234778886
No 23
>PRK08244 hypothetical protein; Provisional
Probab=99.96 E-value=1.3e-26 Score=256.66 Aligned_cols=307 Identities=20% Similarity=0.253 Sum_probs=189.4
Q ss_pred CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCC-cccccCCHHHHHHHHHcCCCcccccchhhh--cccCC--ce
Q 007945 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEATA--TKFNP--NR 183 (584)
Q Consensus 110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~-~r~w~Is~~~l~~L~~lGl~~~~ele~~i~--~~~~~--~~ 183 (584)
+|||+|||| |+|+++|+.|+++|++|+||||++.+.. .+...+++..++.|..+|++++..-..... ..+.. ..
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~ 81 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLDTR 81 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEeccccc
Confidence 589999995 5799999999999999999999987542 355678899999999999875421000000 00100 00
Q ss_pred eeecCCCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEc--CC-cEEEccEEEEecCCC
Q 007945 184 CGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA--EG-KILSSHLIIDAMGNF 260 (584)
Q Consensus 184 v~f~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~--~G-~~i~ArlVIdADG~~ 260 (584)
+.|. ....+....+.+++..+++.|.+++++.|++++.+++++++..++++++|++. +| ++++|++||+|||.+
T Consensus 82 ~~~~---~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~ 158 (493)
T PRK08244 82 LDFS---ALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAG 158 (493)
T ss_pred CCcc---cCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCC
Confidence 1111 01111223345888999999999999899999999999999988888887765 35 479999999999999
Q ss_pred hHHHhHhcCCC---CCCceeeEEEEeeeccCCCcceeEEccCCcccccCCCCceEEEEEccCCCCCCccEEEEEEccCCC
Q 007945 261 SPVVKQIRSGR---KPDGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQ 337 (584)
Q Consensus 261 S~v~rql~~~~---~~~~~~~~vg~~a~g~~~~~~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~L~~~~~~~ 337 (584)
|.++++++... .+...+. ++... .++......+.. .. ..+.+| .+|.+++ ...+.+...+..
T Consensus 159 S~vR~~lgi~~~g~~~~~~~~-~~~~~--~~~~~~~~~~~~---~~-----~~g~~~-~~P~~~~---~~~~~~~~~~~~ 223 (493)
T PRK08244 159 SIVRKQAGIAFPGTDATFTAM-LGDVV--LKDPPPSSVLSL---CT-----REGGVM-IVPLSGG---IYRVLIIDPERP 223 (493)
T ss_pred hHHHHhcCCCccCCCcceEEE-EEEEE--ecCCCCcceeEE---Ee-----CCceEE-EEECCCC---eEEEEEEcCCcc
Confidence 99999986542 1222221 11111 110000001000 01 124555 5888765 222222221110
Q ss_pred --C-C-CccHHHHHHHHHhhCcccccccCCceeEEEEEeeeeccccCCCCCccCCCEEEeCCCCCCcCCCCCCchhhHHH
Q 007945 338 --A-G-SPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTR 413 (584)
Q Consensus 338 --~-~-~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLvGDAA~~v~PltGgG~g~~lr 413 (584)
. . ..+.+++.+.+.+.++.... .....+. ..++.......++..+||+|+|||||.++|++|||+|++++
T Consensus 224 ~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~----~~~~~~~~~a~~~~~gRv~L~GDAAH~~~P~~GqG~n~gi~ 297 (493)
T PRK08244 224 QVPKDEPVTLEELKTSLIRICGTDFG--LNDPVWM----SRFGNATRQAERYRSGRIFLAGDAAHIHFPAGGQGLNVGLQ 297 (493)
T ss_pred cccCCCCCCHHHHHHHHHHhhCCCCC--cCCeeEE----EecccceeeHhhhccCcEEEeecceeccCCccccccccchh
Confidence 1 1 12445554444333321111 1111111 12333222333567799999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCChhhhHhhhchhh
Q 007945 414 HLGRLSTGVYEAVRGDFVDSYSLSLLNPYMP 444 (584)
Q Consensus 414 ~~~~La~~i~~AL~~~~ls~~~l~~L~~Ye~ 444 (584)
|+..|++.|+.+++. ...... |..|+.
T Consensus 298 DA~~La~~La~~l~g-~~~~~l---L~~Ye~ 324 (493)
T PRK08244 298 DAMNLGWKLAAAIKG-WAPDWL---LDSYHA 324 (493)
T ss_pred hHHHHHHHHHHHHcC-CCCchh---hhhhHH
Confidence 999999999998853 223322 555654
No 24
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.96 E-value=1.2e-26 Score=250.80 Aligned_cols=312 Identities=21% Similarity=0.213 Sum_probs=186.0
Q ss_pred CCccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCC---cccccCCHHHHHHHHHcCCCcccccchhhhc--cc-C-
Q 007945 109 GTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGR---EQEWNISRKELLELVESGILVEDDIDEATAT--KF-N- 180 (584)
Q Consensus 109 ~~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~---~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~--~~-~- 180 (584)
.+|||+|||| ++|+++|..|+++|++|+|+||++.++. .+...+++..++.|..+|++++..-...... .+ +
T Consensus 17 ~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~ 96 (415)
T PRK07364 17 LTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKILPQIGKFRQIRLSDA 96 (415)
T ss_pred cccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhhHhhcCCccEEEEEeC
Confidence 3699999996 5799999999999999999999987542 2345789999999999999865210000000 00 0
Q ss_pred --CceeeecCCCcccccccccceeCHHHHHHHHHHHHHhC-CCEEEeCceEEEEEEeCCeEEEEEcC-C--cEEEccEEE
Q 007945 181 --PNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLAE-G--KILSSHLII 254 (584)
Q Consensus 181 --~~~v~f~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~-G~~i~~~t~v~~v~~~~~gv~V~~~~-G--~~i~ArlVI 254 (584)
...+.|.. ..+.. ....+.+.+..|.+.|.+++.+. |++++.++++++++.++++++|++.+ + .+++||+||
T Consensus 97 ~~~~~~~~~~-~~~~~-~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~adlvI 174 (415)
T PRK07364 97 DYPGVVKFQP-TDLGT-EALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQDAATVTLEIEGKQQTLQSKLVV 174 (415)
T ss_pred CCCceeeecc-ccCCC-CccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeeEEEEccCCcceEEeeeEEE
Confidence 01112211 01111 11223344557888999988876 68999999999998888888888863 2 369999999
Q ss_pred EecCCChHHHhHhcCCCC---CCceeeEEEEeeeccCCCc-ceeEEccCCcccccCCCCceEEEEEccCCCCCCccEEEE
Q 007945 255 DAMGNFSPVVKQIRSGRK---PDGVCLVVGSCARGFKDNS-TSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYM 330 (584)
Q Consensus 255 dADG~~S~v~rql~~~~~---~~~~~~~vg~~a~g~~~~~-~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~L 330 (584)
+|||.+|.+|++++.... +...|..+ .+....+... ..+.+. ..+++| .+|.+++ ....+
T Consensus 175 gADG~~S~vR~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----------~~g~~~-~~p~~~~---~~~~~ 238 (415)
T PRK07364 175 AADGARSPIRQAAGIKTKGWKYWQSCVTA-TVKHEAPHNDIAYERFW-----------PSGPFA-ILPLPGN---RCQIV 238 (415)
T ss_pred EeCCCCchhHHHhCCCceeecCCCEEEEE-EEEccCCCCCEEEEEec-----------CCCCeE-EeECCCC---CEEEE
Confidence 999999999998864321 11222111 1111111000 001111 123456 5788754 22222
Q ss_pred EEccCCCC---CCccHHHHHHHHHhhCcccccccCCceeEEEEEeeeeccccCCCCCccCCCEEEeCCCCCCcCCCCCCc
Q 007945 331 FTYIDPQA---GSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGG 407 (584)
Q Consensus 331 ~~~~~~~~---~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLvGDAA~~v~PltGgG 407 (584)
+....... ...+.++..+.+.+.++... ..++.... ...+|+......++..+|++|+|||||.++|++|||
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG 313 (415)
T PRK07364 239 WTAPHAQAKALLALPEAEFLAELQQRYGDQL----GKLELLGD-RFLFPVQLMQSDRYVQHRLALVGDAAHCCHPVGGQG 313 (415)
T ss_pred EECCHHHHHHHHCCCHHHHHHHHHHHhhhhh----cCceecCC-CceecchhhhhhhhcCCcEEEEecccccCCCccccc
Confidence 22211000 00011222222222222111 11111111 123455433334677899999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHhCC-CCChhhhHhhhchhhh
Q 007945 408 FGSLTRHLGRLSTGVYEAVRGD-FVDSYSLSLLNPYMPN 445 (584)
Q Consensus 408 ~g~~lr~~~~La~~i~~AL~~~-~ls~~~l~~L~~Ye~~ 445 (584)
++++++|+..|++.+..+++.+ +.. ..+.|+.|+..
T Consensus 314 ~n~al~DA~~La~~L~~~~~~~~~~~--~~~~L~~Y~~~ 350 (415)
T PRK07364 314 LNLGIRDAAALAQVLQTAHQRGEDIG--SLAVLKRYERW 350 (415)
T ss_pred HhHHHHHHHHHHHHHHHHHhcCCCcc--cHHHHHHHHHH
Confidence 9999999999999998887543 222 12347778773
No 25
>PRK07190 hypothetical protein; Provisional
Probab=99.96 E-value=2e-26 Score=254.23 Aligned_cols=297 Identities=15% Similarity=0.153 Sum_probs=186.7
Q ss_pred CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCC-cccccCCHHHHHHHHHcCCCcccccchhh---hcccCCce-
Q 007945 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEAT---ATKFNPNR- 183 (584)
Q Consensus 110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~-~r~w~Is~~~l~~L~~lGl~~~~ele~~i---~~~~~~~~- 183 (584)
.+||+|||| |+|+++|+.|+++|++|+||||.+.+.. .+.-.++..+++.|..+|++++..-.... ...|....
T Consensus 5 ~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~~~g~~ 84 (487)
T PRK07190 5 VTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVWANGKF 84 (487)
T ss_pred cceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEecCCce
Confidence 589999995 6799999999999999999999986542 23445888999999999987532100000 01111111
Q ss_pred eeecC--CCccc-ccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCC
Q 007945 184 CGFEG--KGEIW-VEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF 260 (584)
Q Consensus 184 v~f~~--~~~l~-~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~ 260 (584)
+.... ...+. ......+.+.+..+++.|.+++.+.|++++.+++|+++..+++++++.+.+|++++||+||+|||.+
T Consensus 85 i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~vVgADG~~ 164 (487)
T PRK07190 85 ISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYVIGADGSR 164 (487)
T ss_pred EeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEEEECCCCC
Confidence 10000 00000 0111224577888999999999999999999999999999999998888888899999999999999
Q ss_pred hHHHhHhcCCCC---CCceeeEEEEee-eccCCCcceeEEccCCcccccCCCCceEEEEEccCCCCCCccEEEEEEccCC
Q 007945 261 SPVVKQIRSGRK---PDGVCLVVGSCA-RGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDP 336 (584)
Q Consensus 261 S~v~rql~~~~~---~~~~~~~vg~~a-~g~~~~~~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~L~~~~~~ 336 (584)
|.+|++++++.+ +......+.... ..+++.. ..+.+. .+ .+.++| +|..++ ...++..+..
T Consensus 165 S~vR~~lgi~f~g~~~~~~~~~~d~~~~~~~~~~~-~~~~~~----~~----~g~~~~--~p~~~~---~~r~~~~~~~- 229 (487)
T PRK07190 165 SFVRNHFNVPFEIIRPQIIWAVIDGVIDTDFPKVP-EIIVFQ----AE----TSDVAW--IPREGE---IDRFYVRMDT- 229 (487)
T ss_pred HHHHHHcCCCccccccceeEEEEEEEEccCCCCCc-ceEEEE----cC----CCCEEE--EECCCC---EEEEEEEcCC-
Confidence 999999876532 111111111111 1121100 011110 01 235565 566543 2222222211
Q ss_pred CCCCccHHHHHHHHHhhCcccccccCCceeEEEEEeeeeccccCCCCCcc-CCCEEEeCCCCCCcCCCCCCchhhHHHHH
Q 007945 337 QAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAA-FNRILQFGDASGIQSPVSFGGFGSLTRHL 415 (584)
Q Consensus 337 ~~~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~-~~rvlLvGDAA~~v~PltGgG~g~~lr~~ 415 (584)
...+.++..+...+.+... ...+.+..+ ...+|+......++. .+||+|+|||||.++|+.|||+|.+++|+
T Consensus 230 --~~~t~~~~~~~l~~~~~~~-~~~~~~~~w----~s~~~~~~r~a~~~r~~gRV~LaGDAAH~h~P~gGQGmN~giqDA 302 (487)
T PRK07190 230 --KDFTLEQAIAKINHAMQPH-RLGFKEIVW----FSQFSVKESVAEHFFIQDRIFLAGDACHIHSVNGGQGLNTGLADA 302 (487)
T ss_pred --CCCCHHHHHHHHHHhcCCC-CCceEEEEE----EEEeeeCcEehhhcCcCCcEEEEecccccCCCccccchhhhHHHH
Confidence 1234454444443323111 111122222 134555444455675 69999999999999999999999999999
Q ss_pred HHHHHHHHHHHhC
Q 007945 416 GRLSTGVYEAVRG 428 (584)
Q Consensus 416 ~~La~~i~~AL~~ 428 (584)
..|++.|+.+++.
T Consensus 303 ~nL~wkLa~v~~g 315 (487)
T PRK07190 303 FNLIWKLNMVIHH 315 (487)
T ss_pred HHHHHHHHHHHcC
Confidence 9999999988764
No 26
>PRK06834 hypothetical protein; Provisional
Probab=99.96 E-value=1.7e-26 Score=255.04 Aligned_cols=306 Identities=20% Similarity=0.250 Sum_probs=190.1
Q ss_pred CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC--CcccccCCHHHHHHHHHcCCCcccccchhhh--cccCCcee
Q 007945 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG--REQEWNISRKELLELVESGILVEDDIDEATA--TKFNPNRC 184 (584)
Q Consensus 110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~--~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~--~~~~~~~v 184 (584)
++||||||| ++|+++|+.|+++|++|+||||.+.+. ..+...++..+++.|..+|++++..-..... ..+. ..
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~--~~ 80 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFA--AT 80 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceee--eE
Confidence 589999995 679999999999999999999998643 2355679999999999999875421000000 0111 11
Q ss_pred eecCCCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChHHH
Q 007945 185 GFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVV 264 (584)
Q Consensus 185 ~f~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~v~ 264 (584)
.+.. ..+..+..+.+.+.+..+++.|.+++++.|++++.++++++++.++++++|++.+|++++|++||+|||.+|.++
T Consensus 81 ~~~~-~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S~vR 159 (488)
T PRK06834 81 RLDI-SDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRSLVR 159 (488)
T ss_pred eccc-ccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCCCcH
Confidence 1110 111112233456788899999999999999999999999999999999999888888999999999999999999
Q ss_pred hHhcCCC---CCCceeeEEEEeeeccCCCcceeEEccCCcccccCCCCceEEEEEccCC-CCCCccEEEEEEccCCCC-C
Q 007945 265 KQIRSGR---KPDGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAG-SGPLDRTTYMFTYIDPQA-G 339 (584)
Q Consensus 265 rql~~~~---~~~~~~~~vg~~a~g~~~~~~~di~~~~~~~~~~~~~~~~~~W~~fP~~-~g~~~~~~~L~~~~~~~~-~ 339 (584)
+++++.. .+...+.++.. ..++.....+.. . ..+.+. .+|.. ++ ...+++....... .
T Consensus 160 ~~lgi~~~g~~~~~~~~~~dv---~~~~~~~~~~~~-----~-----~~g~~~-~~~~~~~~---~~~~~~~~~~~~~~~ 222 (488)
T PRK06834 160 KAAGIDFPGWDPTTSYLIAEV---EMTEEPEWGVHR-----D-----ALGIHA-FGRLEDEG---PVRVMVTEKQVGATG 222 (488)
T ss_pred hhcCCCCCCCCcceEEEEEEE---EecCCCCcceee-----C-----CCceEE-EeccCCCC---eEEEEEecCCCCCCC
Confidence 9986532 22222211111 011000000000 0 112222 24443 22 2222222111111 1
Q ss_pred CccHHHHHHHHHhhCcccccccCCceeEEEEEeeeeccccCCCCCccCCCEEEeCCCCCCcCCCCCCchhhHHHHHHHHH
Q 007945 340 SPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLS 419 (584)
Q Consensus 340 ~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLvGDAA~~v~PltGgG~g~~lr~~~~La 419 (584)
..+.+++.+.+.+.++. ........+. ..++.......++..+||+|+|||||.++|+.|||+|++++|+..|+
T Consensus 223 ~~~~~~~~~~l~~~~g~--~~~~~~~~~~----~~~~~~~r~a~~~~~gRV~LaGDAAH~~~P~gGQG~N~gi~DA~nLa 296 (488)
T PRK06834 223 EPTLDDLREALIAVYGT--DYGIHSPTWI----SRFTDMARQAASYRDGRVLLAGDAAHVHSPVGGQGLNTGVQDAVNLG 296 (488)
T ss_pred CCCHHHHHHHHHHhhCC--CCccccceeE----EeccccceecccccCCcEEEEeeccccCCccccccccccHHHHHHHH
Confidence 22444444444333321 1111122111 22343323445778899999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCChhhhHhhhchhhh
Q 007945 420 TGVYEAVRGDFVDSYSLSLLNPYMPN 445 (584)
Q Consensus 420 ~~i~~AL~~~~ls~~~l~~L~~Ye~~ 445 (584)
+.|+..++.. .... .|..|+..
T Consensus 297 wkLa~vl~g~-~~~~---lLd~Ye~e 318 (488)
T PRK06834 297 WKLAQVVKGT-SPES---LLDTYHAE 318 (488)
T ss_pred HHHHHHHcCC-CcHH---HHHHHHHH
Confidence 9999988632 2222 35666653
No 27
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.96 E-value=1.2e-26 Score=247.52 Aligned_cols=309 Identities=18% Similarity=0.186 Sum_probs=193.1
Q ss_pred cEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCC------cccccCCHHHHHHHHHcCCCcccccchhhhccc-----
Q 007945 112 DVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGR------EQEWNISRKELLELVESGILVEDDIDEATATKF----- 179 (584)
Q Consensus 112 DVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~------~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~----- 179 (584)
||+|||| ++|+++|..|+++|++|+|+||++.++. .+...+++..++.|.++|++++.. ......+
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~--~~~~~~~~~~~~ 78 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIE--PDRAQPIRDIHV 78 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhh--hhcCCCceEEEE
Confidence 8999996 5799999999999999999999987643 245678999999999999875422 1001111
Q ss_pred -CCc---eeeecCCCcccccccccceeCHHHHHHHHHHHHHhCC-CEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEE
Q 007945 180 -NPN---RCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLG-GVIFEGYSVSSICTYENAAVLLLAEGKILSSHLII 254 (584)
Q Consensus 180 -~~~---~v~f~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G-~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVI 254 (584)
+.. .+.+... ... .....+.+++..|.+.|.+.+.+.| ++++.+++|+++..++++++|++++|+++.|++||
T Consensus 79 ~~~~~~~~~~~~~~-~~~-~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi 156 (385)
T TIGR01988 79 SDGGSFGALHFDAD-EIG-LEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHSDHVELTLDDGQQLRARLLV 156 (385)
T ss_pred EeCCCCceEEechh-hcC-CCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEECCCCEEEeeEEE
Confidence 110 1111110 000 0123456889999999999999888 89999999999998888899998899899999999
Q ss_pred EecCCChHHHhHhcCCCC---CCceeeEEEEeeeccCCCcceeEEccCCcccccCCCCceEEEEEccCCCCCCccEEEEE
Q 007945 255 DAMGNFSPVVKQIRSGRK---PDGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMF 331 (584)
Q Consensus 255 dADG~~S~v~rql~~~~~---~~~~~~~vg~~a~g~~~~~~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~L~ 331 (584)
+|||.+|.++++++...+ +...+.+. ......+........ .. ..+++| .||..++ ...+.+
T Consensus 157 ~adG~~S~vr~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----~~-----~~g~~~-~~p~~~~---~~~~~~ 221 (385)
T TIGR01988 157 GADGANSKVRQLAGIPTTGWDYGQSAVVA-NVKHERPHQGTAWER-----FT-----PTGPLA-LLPLPDN---RSSLVW 221 (385)
T ss_pred EeCCCCCHHHHHcCCCccccccCCeEEEE-EEEecCCCCCEEEEE-----ec-----CCCCEE-EeECCCC---CeEEEE
Confidence 999999999999864322 11222111 111010010010001 11 124455 5888765 233333
Q ss_pred EccCCCC---CCccHHHHHHHHHhhCcccccccCCceeEEEEEeeeeccccCCCCCccCCCEEEeCCCCCCcCCCCCCch
Q 007945 332 TYIDPQA---GSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGF 408 (584)
Q Consensus 332 ~~~~~~~---~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLvGDAA~~v~PltGgG~ 408 (584)
...+... ...+.+++.+.+.+.++... .++.... ....+|+......++..+||+|+|||||.++|++|+|+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~v~LiGDAah~~~P~~G~G~ 296 (385)
T TIGR01988 222 TLPPEEAERLLALSDEEFLAELQRAFGSRL----GAITLVG-ERHAFPLSLTHAKRYVAPRLALIGDAAHTIHPLAGQGL 296 (385)
T ss_pred ECCHHHHHHHHcCCHHHHHHHHHHHHhhhc----CceEecc-CcceeechhhhhhheecCceEEEecccccCCccccchh
Confidence 3321100 00122233333323222111 1111111 12345664433446678999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhCC-CCChhhhHhhhchhhhh
Q 007945 409 GSLTRHLGRLSTGVYEAVRGD-FVDSYSLSLLNPYMPNL 446 (584)
Q Consensus 409 g~~lr~~~~La~~i~~AL~~~-~ls~~~l~~L~~Ye~~~ 446 (584)
+++++|+..|++.|..++..+ +.+ ..+.++.|+...
T Consensus 297 ~~Ai~da~~La~~L~~~~~~~~~~~--~~~~l~~y~~~r 333 (385)
T TIGR01988 297 NLGLRDVAALAEVLEDARRRGEDIG--SPRVLQRYERRR 333 (385)
T ss_pred hhhHHHHHHHHHHHHHHHhcCCCCC--cHHHHHHHHHHH
Confidence 999999999999999887643 111 122366777643
No 28
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.96 E-value=3.5e-26 Score=234.17 Aligned_cols=287 Identities=20% Similarity=0.219 Sum_probs=184.9
Q ss_pred ccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCc-ccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecC
Q 007945 111 FDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGRE-QEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG 188 (584)
Q Consensus 111 yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~-r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~ 188 (584)
|||+|||| ++|+++|..|+++|++|+||||++.++.. ....++...++.+...+. ... ..++...+....
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~-----~~~~~~~~~~~~ 72 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLE---LIV-----NLVRGARFFSPN 72 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCch---hhh-----hheeeEEEEcCC
Confidence 79999996 57999999999999999999999876532 223466665555433221 000 011111111111
Q ss_pred CCc--ccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcC-CcEEEccEEEEecCCChHHHh
Q 007945 189 KGE--IWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE-GKILSSHLIIDAMGNFSPVVK 265 (584)
Q Consensus 189 ~~~--l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~-G~~i~ArlVIdADG~~S~v~r 265 (584)
+.. ...+....+.+++..+.+.|.+++.+.|++++.+++++++..+++++++.+.+ +.+++|++||+|||.+|.+++
T Consensus 73 ~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~s~~~~ 152 (295)
T TIGR02032 73 GDSVEIPIETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSRSIVAK 152 (295)
T ss_pred CcEEEeccCCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcchHHHH
Confidence 111 11112233568999999999999999999999999999999888888777654 468999999999999999999
Q ss_pred HhcCCCCCCceeeEEEEeee--ccC-CCcceeEEccCCcccccCCCCceEEEEEccCCCCCCccEEEEEEccCCCCCCcc
Q 007945 266 QIRSGRKPDGVCLVVGSCAR--GFK-DNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAGSPK 342 (584)
Q Consensus 266 ql~~~~~~~~~~~~vg~~a~--g~~-~~~~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~L~~~~~~~~~~~~ 342 (584)
+++........+........ +.+ +.+...++...... ..++.| .+|..++. ....+...... ...+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~-~~P~~~~~---~~v~~~~~~~~-~~~~ 221 (295)
T TIGR02032 153 KLGLRKEPRELGVAARAEVEMPDEEVDEDFVEVYIDRGIS------PGGYGW-VFPKGDGT---ANVGVGSRSAE-EGED 221 (295)
T ss_pred hcCCCCCCcceeeEEEEEEecCCcccCcceEEEEcCCCcC------CCceEE-EEeCCCCe---EEEeeeeccCC-CCCC
Confidence 88654333233322111111 100 11222333322111 247888 69987652 22222222211 2347
Q ss_pred HHHHHHHHHhhCcccccccCCceeEEEEEeeeeccccCCCCCccCCCEEEeCCCCCCcCCCCCCchhhHHHHHHHHHHHH
Q 007945 343 LEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGV 422 (584)
Q Consensus 343 l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLvGDAA~~v~PltGgG~g~~lr~~~~La~~i 422 (584)
+++.++++.+..|.+ .+.++.+...+.+|... ...+...+|++++|||||++||++|+|++++++|+..+|+.|
T Consensus 222 ~~~~~~~~~~~~~~l-----~~~~~~~~~~~~~~~~~-~~~~~~~~~v~liGDAA~~~~P~~g~G~~~a~~~a~~aa~~~ 295 (295)
T TIGR02032 222 LKKYLKDFLARRPEL-----KDAETVEVIGAPIPIGR-PDDKTVRGNVLLVGDAAGHVKPLTGEGIYYAMRSGDVAAEVI 295 (295)
T ss_pred HHHHHHHHHHhCccc-----ccCcEEeeeceeeccCC-CCCccccCCEEEEecccCCCCCccCCcHHHHHHHHHHHHhhC
Confidence 888889888877753 23333444445566643 334667899999999999999999999999999998887653
No 29
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=99.95 E-value=4.9e-28 Score=253.35 Aligned_cols=322 Identities=20% Similarity=0.208 Sum_probs=182.2
Q ss_pred CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCc-ccccCCHHHHHHHHHcCCCcccccchhhhc-----ccCC-
Q 007945 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGRE-QEWNISRKELLELVESGILVEDDIDEATAT-----KFNP- 181 (584)
Q Consensus 110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~-r~w~Is~~~l~~L~~lGl~~~~ele~~i~~-----~~~~- 181 (584)
+|||+|||| ++|+++|..|+++|++|+||||++.+... +...++...++.|.++|+++...-...... .+..
T Consensus 1 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~ 80 (356)
T PF01494_consen 1 EYDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDEILARGSPHEVMRIFFYDGI 80 (356)
T ss_dssp EEEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHHHHHHSEEECEEEEEEEEET
T ss_pred CceEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccccchhhhhhhcccccceeeEeeccc
Confidence 389999996 57999999999999999999999876432 345688889999999998753110000000 0000
Q ss_pred --ce--e--eecC-CCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcC---C--cEEE
Q 007945 182 --NR--C--GFEG-KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE---G--KILS 249 (584)
Q Consensus 182 --~~--v--~f~~-~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~---G--~~i~ 249 (584)
.. . .... ......+......+++..|++.|.+.+++.|++++.+++++++..+++++++.+.+ | ++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~ 160 (356)
T PF01494_consen 81 SDSRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIE 160 (356)
T ss_dssp TTSEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEE
T ss_pred CCccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCCceeEEE
Confidence 00 0 0000 00011122223568899999999999999999999999999999999988766543 3 3799
Q ss_pred ccEEEEecCCChHHHhHhcCCCCCCcee---eEEEEeee-ccCCCcceeEEccCCcccccCCCCceEEEEEccCCCCCCc
Q 007945 250 SHLIIDAMGNFSPVVKQIRSGRKPDGVC---LVVGSCAR-GFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLD 325 (584)
Q Consensus 250 ArlVIdADG~~S~v~rql~~~~~~~~~~---~~vg~~a~-g~~~~~~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~ 325 (584)
||+||+|||.+|.+|++++...+....+ ...+.... .+++......+... . ..+.+| .+|..++.
T Consensus 161 adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-----~~~~~~-~~p~~~~~-- 229 (356)
T PF01494_consen 161 ADLVVGADGAHSKVRKQLGIDRPGPDTVYRWGWFGIVFDSDLSDPWEDHCFIYS---P-----PSGGFA-IIPLENGD-- 229 (356)
T ss_dssp ESEEEE-SGTT-HHHHHTTGGEEEEEEEEEEEEEEEEEECHSHTTTSCEEEEEE---E-----TTEEEE-EEEETTTT--
T ss_pred EeeeecccCcccchhhhccccccCcccccccccccccccccccccccccccccc---c-----ccccee-EeeccCCc--
Confidence 9999999999999999986442111111 01111110 11110000111110 1 134444 57876521
Q ss_pred cEEEEEEcc-CCCCCCccHHHHHHHHHhhCcccccccCCceeEEEEEeeeeccccCCCCCccCCCEEEeCCCCCCcCCCC
Q 007945 326 RTTYMFTYI-DPQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVS 404 (584)
Q Consensus 326 ~~~~L~~~~-~~~~~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLvGDAA~~v~Plt 404 (584)
...+++... .............+.+++.++...........+.. ...+|.......++..+||+|+|||||.++|++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~grv~LiGDAAh~~~P~~ 307 (356)
T PF01494_consen 230 RSRFVWFLPFDESKEERPEEFSPEELFANLPEIFGPDLLETEIDE--ISAWPIPQRVADRWVKGRVLLIGDAAHAMDPFS 307 (356)
T ss_dssp EEEEEEEEETTTTTCCSTHCHHHHHHHHHHHHHHHTCHHHHEEEE--EEEEEEEEEEESSSEETTEEE-GGGTEEE-CCT
T ss_pred cceEEEeeecccccccccccccccccccccccccccccccccccc--ccccccccccccccccceeEEeccceeeecccc
Confidence 233333221 11111111111112222222111111001111111 112333222233567799999999999999999
Q ss_pred CCchhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhchhhhhhH
Q 007945 405 FGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLSA 448 (584)
Q Consensus 405 GgG~g~~lr~~~~La~~i~~AL~~~~ls~~~l~~L~~Ye~~~~~ 448 (584)
|+|++.++.|+..|++.|..+++ +.... +.|+.|+...+.
T Consensus 308 GqG~n~Ai~da~~La~~L~~~~~-g~~~~---~~l~~Y~~~r~~ 347 (356)
T PF01494_consen 308 GQGINMAIEDAAALAELLAAALK-GEASE---EALKAYEQERRP 347 (356)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHT-TSSHH---HHHHHHHHHHHH
T ss_pred cCCCCcccccHHHHHHHHHHHhc-CCcHH---HHHHHHHHHHHH
Confidence 99999999999999999998875 33222 337888875433
No 30
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=99.95 E-value=1.1e-25 Score=255.43 Aligned_cols=388 Identities=15% Similarity=0.095 Sum_probs=222.4
Q ss_pred CCCccEEEEcc-hHHHHHHHHHHh-CCCeEEEEcCCCCCCC-cccccCCHHHHHHHHHcCCCcccccchhhh---cccCC
Q 007945 108 VGTFDVIVCGG-TLGIFIATALSF-KGLRVAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEATA---TKFNP 181 (584)
Q Consensus 108 ~~~yDVVIVGG-g~Gl~~Aa~LAr-~GlrVlLIEr~~~~~~-~r~w~Is~~~l~~L~~lGl~~~~ele~~i~---~~~~~ 181 (584)
..++||+|||| |+|+++|+.||+ .|++|.||||++.+.. .+.-+|++.+++.|..+|++++..-+.... ..|++
T Consensus 30 ~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l~~~g~~~~~~~~~~~ 109 (634)
T PRK08294 30 PDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEAYWINETAFWKP 109 (634)
T ss_pred CCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHHHhhcccccceEEEcC
Confidence 34799999995 679999999999 5999999999875432 344578999999999999986422111100 01111
Q ss_pred c-----eee----ecCCCcccccccccceeCHHHHHHHHHHHHHhCCC--EEEeCceEEEEEEeCC---eEEEEEc----
Q 007945 182 N-----RCG----FEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGG--VIFEGYSVSSICTYEN---AAVLLLA---- 243 (584)
Q Consensus 182 ~-----~v~----f~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~--~i~~~t~v~~v~~~~~---gv~V~~~---- 243 (584)
. .+. +........+.. .+.+++..+++.|.+++.+.|+ ++..++++++++++++ .|+|++.
T Consensus 110 ~~~~~~~i~r~~~~~~~~~~~~~~~-~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~ 188 (634)
T PRK08294 110 DPADPSTIVRTGRVQDTEDGLSEFP-HVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDG 188 (634)
T ss_pred CCccccceeccccccccCCCCCCCc-cEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCC
Confidence 0 010 000000000111 1457888999999999988775 7788999999987653 4777774
Q ss_pred --CC--cEEEccEEEEecCCChHHHhHhcCCC---CCCceeeEEEEee-eccCCCcceeEEccCCcccccCCCCceEEEE
Q 007945 244 --EG--KILSSHLIIDAMGNFSPVVKQIRSGR---KPDGVCLVVGSCA-RGFKDNSTSDVIYSSSSVKKVGDSEVQLFWE 315 (584)
Q Consensus 244 --~G--~~i~ArlVIdADG~~S~v~rql~~~~---~~~~~~~~vg~~a-~g~~~~~~~di~~~~~~~~~~~~~~~~~~W~ 315 (584)
+| ++++||+||+|||.+|.||++++... .....+.++.... ..+++....-.+.+ +.++.++
T Consensus 189 ~~~g~~~tv~A~~lVGaDGa~S~VR~~lgi~~~G~~~~~~~~v~dv~~~~~~p~~~~~~~~~~--------~~~g~~~-- 258 (634)
T PRK08294 189 EHEGEEETVRAKYVVGCDGARSRVRKAIGRELRGDSANHAWGVMDVLAVTDFPDIRLKCAIQS--------ASEGSIL-- 258 (634)
T ss_pred CCCCceEEEEeCEEEECCCCchHHHHhcCCCccCCcccceEEEEEEEEccCCCCcceEEEEec--------CCCceEE--
Confidence 34 58999999999999999999987532 2223222211111 12322111001110 0123333
Q ss_pred EccCCCCCCccEEEEEEccCCC---C---CCccHHHHHHHHHhhCcccccccCCceeEEEEEeeeeccccCCCCCc----
Q 007945 316 AFPAGSGPLDRTTYMFTYIDPQ---A---GSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPA---- 385 (584)
Q Consensus 316 ~fP~~~g~~~~~~~L~~~~~~~---~---~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~---- 385 (584)
.+|..++. ...+.+.+.... . ...+.+++.+.+.+.++.+.. ....+.+ +..++.......++
T Consensus 259 ~~P~~~g~--~~r~~~~~~~~~~~~~~~~~~~t~e~l~~~~~~~~~p~~~-~~~~v~w----~s~y~i~~r~a~~f~~~~ 331 (634)
T PRK08294 259 LIPREGGY--LVRLYVDLGEVPPDERVAVRNTTVEEVIAKAQRILHPYTL-DVKEVAW----WSVYEVGQRLTDRFDDVP 331 (634)
T ss_pred EEECCCCe--EEEEEEecCcCCCccccccccCCHHHHHHHHHHhcCCCCC-ceeEEeE----Eecccccceehhhccccc
Confidence 36765441 122212221111 1 112556666655444432211 1112211 12223221111122
Q ss_pred ------cCCCEEEeCCCCCCcCCCCCCchhhHHHHHHHHHHHHHHHHhCCCCChhhh-----HhhhchhhhhhHHHHHHH
Q 007945 386 ------AFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSL-----SLLNPYMPNLSASWLFQR 454 (584)
Q Consensus 386 ------~~~rvlLvGDAA~~v~PltGgG~g~~lr~~~~La~~i~~AL~~~~ls~~~l-----~~L~~Ye~~~~~~~~l~k 454 (584)
..+||+|+|||||.++|..|||+|.++.|+..|++.|+..++. ......| ++....+..+..+..+.+
T Consensus 332 ~~~~~~r~gRVfLaGDAAH~hsP~~GQGmN~giqDA~nLawkLa~vl~g-~a~~~lL~tYe~ERrp~a~~li~~~~~~~~ 410 (634)
T PRK08294 332 AEEAGTRLPRVFIAGDACHTHSAKAGQGMNVSMQDGFNLGWKLAAVLSG-RSPPELLHTYSAERQAIAQELIDFDREWST 410 (634)
T ss_pred ccccccccCCEEEEecCccCCCCccccchhhHHHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3589999999999999999999999999999999999988853 2233222 222233333333444555
Q ss_pred Hhhcccc--CCCChHHHHHHHHHHHHHHHhcCCcccccccccccchhHHHHHHHHHHHhCCCC
Q 007945 455 AMSAKQQ--SDVSPDFINELLYVNFQCMQKLGDPVLRPFLQDVIKFGPLAKTLGLVMLNKPQI 515 (584)
Q Consensus 455 ~m~~~~~--~~~~~~~in~ll~~~f~~~~~lp~~~~~~fl~d~~~~~~l~~~~~~~~~~~P~~ 515 (584)
.+..... ...+.+.+++.+......+..++.+|..+.|....+-..+. ..++...+-|..
T Consensus 411 l~~~~~~~~~~~~~~~~~~~~~~~~~~~sG~~~~Y~~s~l~~~~~~~~~~-~~~~~G~r~~~~ 472 (634)
T PRK08294 411 MMAAPPKEGGGVDPAELQDYFVKHGRFTAGTATHYAPSLLTGEATHQDLA-TGFPIGKRFHSA 472 (634)
T ss_pred HhccCCccccccCHHHHHHHHHHhhhhhcccCcccCCccccCCCCchhhc-cCCCCceeCCCC
Confidence 5654432 12345566666555566677899999988887533222222 244555555554
No 31
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=99.95 E-value=6.7e-26 Score=243.73 Aligned_cols=314 Identities=17% Similarity=0.192 Sum_probs=179.3
Q ss_pred CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCC---CCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceee
Q 007945 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLK---GREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCG 185 (584)
Q Consensus 110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~---~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~ 185 (584)
.+||+|||| ++|+++|+.|+++|++|+|+||++.+ ...+...+++..++.|.++|++++.. .. ....+...+.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~--~~-~~~~~~~~~~ 78 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMD--RE-GLVHDGIELR 78 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHH--hc-CCccCcEEEE
Confidence 589999996 57999999999999999999999853 12233458888999999999875421 10 0111111111
Q ss_pred ecCC-Ccccccc----cccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEE-eCCeEEEEEc-CCc--EEEccEEEEe
Q 007945 186 FEGK-GEIWVED----ILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICT-YENAAVLLLA-EGK--ILSSHLIIDA 256 (584)
Q Consensus 186 f~~~-~~l~~~~----~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~-~~~gv~V~~~-~G~--~i~ArlVIdA 256 (584)
+.+. ..+..+. .....+.+..+.+.|.+++.+.|++++.+++++++.. +++++.|++. +|+ +++||+||+|
T Consensus 79 ~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~~~V~~~~~G~~~~i~ad~vVgA 158 (392)
T PRK08243 79 FDGRRHRIDLTELTGGRAVTVYGQTEVTRDLMAARLAAGGPIRFEASDVALHDFDSDRPYVTYEKDGEEHRLDCDFIAGC 158 (392)
T ss_pred ECCEEEEeccccccCCceEEEeCcHHHHHHHHHHHHhCCCeEEEeeeEEEEEecCCCceEEEEEcCCeEEEEEeCEEEEC
Confidence 1110 0011100 0112345677888888888888999999999999876 5667777773 564 7999999999
Q ss_pred cCCChHHHhHhcCCCC--CCceeeE--EEEeeeccCCCcceeEEccCCcccccCCCCceEEEEEccCCCCCCccEEEEEE
Q 007945 257 MGNFSPVVKQIRSGRK--PDGVCLV--VGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFT 332 (584)
Q Consensus 257 DG~~S~v~rql~~~~~--~~~~~~~--vg~~a~g~~~~~~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~L~~ 332 (584)
||.+|.+|++++.... +....+. .+... ..+ ....++++. . ..+++.| .+|.+.+ ...+.+.
T Consensus 159 DG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~---~-----~~~~~~~-~~~~~~~---~~~~~~~ 224 (392)
T PRK08243 159 DGFHGVSRASIPAGALRTFERVYPFGWLGILA-EAP-PVSDELIYA---N-----HERGFAL-CSMRSPT---RSRYYLQ 224 (392)
T ss_pred CCCCCchhhhcCcchhhceecccCceEEEEeC-CCC-CCCCceEEe---e-----CCCceEE-EecCCCC---cEEEEEE
Confidence 9999999999864321 1110000 00000 000 000111111 0 1245555 3454432 2222222
Q ss_pred ccC-CCCCCccHHHHHHHHHhhCcccccccCCceeEEEEEeeeeccccCCCCCccCCCEEEeCCCCCCcCCCCCCchhhH
Q 007945 333 YID-PQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSL 411 (584)
Q Consensus 333 ~~~-~~~~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLvGDAA~~v~PltGgG~g~~ 411 (584)
+.. ......+..+..+.+.+.++......+....+.. ...+|.......++..+|++|+|||||.++|.+|||+|++
T Consensus 225 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~a 302 (392)
T PRK08243 225 CPLDDKVEDWSDERFWDELRRRLPPEDAERLVTGPSIE--KSIAPLRSFVAEPMQYGRLFLAGDAAHIVPPTGAKGLNLA 302 (392)
T ss_pred ecCCCCcccCChhHHHHHHHHhcCcccccccccCcccc--ccceeeeeceeccceeCCEEEEecccccCCCCcCcchhHH
Confidence 221 1111112222233333333321100000001110 1122332222335667999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCChhhhHhhhchhhhhh
Q 007945 412 TRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLS 447 (584)
Q Consensus 412 lr~~~~La~~i~~AL~~~~ls~~~l~~L~~Ye~~~~ 447 (584)
++|+..|++.|.++++.+ ... .|..|+....
T Consensus 303 i~Da~~La~~L~~~~~~~--~~~---~L~~Ye~~r~ 333 (392)
T PRK08243 303 ASDVRYLARALVEFYREG--DTA---LLDAYSATAL 333 (392)
T ss_pred HHHHHHHHHHHHHHhccC--CHH---HHHHHHHHHH
Confidence 999999999999887643 222 3666766433
No 32
>PRK06996 hypothetical protein; Provisional
Probab=99.95 E-value=5.9e-26 Score=244.70 Aligned_cols=312 Identities=13% Similarity=0.142 Sum_probs=186.1
Q ss_pred CCCCccEEEEcc-hHHHHHHHHHHhCC----CeEEEEcCCCCCC---CcccccCCHHHHHHHHHcCCCccccc--chhhh
Q 007945 107 AVGTFDVIVCGG-TLGIFIATALSFKG----LRVAIVERNTLKG---REQEWNISRKELLELVESGILVEDDI--DEATA 176 (584)
Q Consensus 107 ~~~~yDVVIVGG-g~Gl~~Aa~LAr~G----lrVlLIEr~~~~~---~~r~w~Is~~~l~~L~~lGl~~~~el--e~~i~ 176 (584)
++..|||+|||| ++|+++|+.|+++| ++|+|+|+.+.+. ..+...++..+++.|+.+|+|+.... +....
T Consensus 8 ~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~~~~~~~~~~ 87 (398)
T PRK06996 8 AAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPADATPIEHIHV 87 (398)
T ss_pred cCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhcCCcccEEEE
Confidence 344799999996 57999999999987 5799999986543 23567799999999999999875211 11100
Q ss_pred ccc-CCceeeecCCCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCC---cEEEccE
Q 007945 177 TKF-NPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG---KILSSHL 252 (584)
Q Consensus 177 ~~~-~~~~v~f~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G---~~i~Arl 252 (584)
... ....+.|.. .....+ .+++.+++..|++.|.+++.+.|+++..++++++++.++++++|++.++ ++++|++
T Consensus 88 ~~~~~~g~~~~~~-~~~~~~-~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~~~~~~g~~~i~a~l 165 (398)
T PRK06996 88 SQRGHFGRTLIDR-DDHDVP-ALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDADGVTLALGTPQGARTLRARI 165 (398)
T ss_pred ecCCCCceEEecc-cccCCC-cCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeEEEEECCCCcceEEeeeE
Confidence 000 011222221 111122 2456799999999999999999999999999999988889999988754 5899999
Q ss_pred EEEecCC-ChHHHhHhcCCCC---CCceeeEEEEeeeccCCCcc-eeEEccCCcccccCCCCceEEEEEccCCCCCCccE
Q 007945 253 IIDAMGN-FSPVVKQIRSGRK---PDGVCLVVGSCARGFKDNST-SDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRT 327 (584)
Q Consensus 253 VIdADG~-~S~v~rql~~~~~---~~~~~~~vg~~a~g~~~~~~-~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~ 327 (584)
||+|||. .|.++++++.... +...+.+. .+....+.... .+.+... +.+ ..+|.+++.....
T Consensus 166 vIgADG~~~s~~r~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~----------G~~--~~lp~~~~~~~~~ 232 (398)
T PRK06996 166 AVQAEGGLFHDQKADAGDSARRRDYGQTAIVG-TVTVSAPRPGWAWERFTHE----------GPL--ALLPLGGPRQADY 232 (398)
T ss_pred EEECCCCCchHHHHHcCCCceeeecCCeEEEE-EEEccCCCCCEEEEEecCC----------CCe--EEeECCCCCCCcE
Confidence 9999996 5777887765322 22333221 11111111111 1111110 111 1345543210001
Q ss_pred EEEEEccCCCC---CCccHHHHHHHHHhhCcccccccCCceeEEEEEeeeeccccCCCCCccCCCEEEeCCCCCCcCCCC
Q 007945 328 TYMFTYIDPQA---GSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVS 404 (584)
Q Consensus 328 ~~L~~~~~~~~---~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLvGDAA~~v~Plt 404 (584)
.+++....... ...+..+..+.+.+.+.. .+..+...... ..+|.+.....++..+||+|+|||||.+||++
T Consensus 233 ~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~-~~~~l~~~~~~~~~~grv~LiGDAAH~~~P~~ 307 (398)
T PRK06996 233 ALVWCCAPDEAARRAALPDDAFLAELGAAFGT----RMGRFTRIAGR-HAFPLGLNAARTLVNGRIAAVGNAAQTLHPVA 307 (398)
T ss_pred EEEEECCHHHHHHHHcCCHHHHHHHHHHHhcc----ccCceEEecce-EEEeeecccccceecCCEEEEEhhhccCCccc
Confidence 22211111000 000111222222222211 11222222221 23566544455778899999999999999999
Q ss_pred CCchhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhchhhh
Q 007945 405 FGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPN 445 (584)
Q Consensus 405 GgG~g~~lr~~~~La~~i~~AL~~~~ls~~~l~~L~~Ye~~ 445 (584)
|||+|++++|+..|++.|.. .+. ... .|..|+..
T Consensus 308 GQG~n~ai~Da~~La~~L~~---~~~-~~~---~L~~Y~~~ 341 (398)
T PRK06996 308 GQGLNLGLRDAHTLADALSD---HGA-TPL---ALATFAAR 341 (398)
T ss_pred chhHHHHHHHHHHHHHHHHh---cCC-cHH---HHHHHHHH
Confidence 99999999999999988854 221 222 26677764
No 33
>PRK09126 hypothetical protein; Provisional
Probab=99.95 E-value=1.9e-26 Score=247.26 Aligned_cols=314 Identities=20% Similarity=0.215 Sum_probs=188.2
Q ss_pred CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCC------cccccCCHHHHHHHHHcCCCcccccchh-hhcc---
Q 007945 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGR------EQEWNISRKELLELVESGILVEDDIDEA-TATK--- 178 (584)
Q Consensus 110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~------~r~w~Is~~~l~~L~~lGl~~~~ele~~-i~~~--- 178 (584)
+|||+|||| ++|+++|..|+++|++|+|+||.+.++. .+...+++..++.|..+|+++...-... ....
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~ 82 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLRDAKV 82 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccceEEE
Confidence 589999996 5799999999999999999999986431 1234577888999999998754211100 0000
Q ss_pred cC---CceeeecCCCcccccccccceeCHHHHHHHHHHHHHh-CCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEE
Q 007945 179 FN---PNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLII 254 (584)
Q Consensus 179 ~~---~~~v~f~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~-~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVI 254 (584)
++ ...+.|.... .....+++.+++..+.+.|.+++.+ .|++++.+++|++++.+++++.|++++|++++||+||
T Consensus 83 ~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~a~~vI 160 (392)
T PRK09126 83 LNGRSPFALTFDARG--RGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDDGAQVTLANGRRLTARLLV 160 (392)
T ss_pred EcCCCCceeEeehhh--cCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCeEEEEEcCCCEEEeCEEE
Confidence 01 0112221100 0012234557888899998888865 5899999999999988888888988889999999999
Q ss_pred EecCCChHHHhHhcCCCCCC---ceeeEEEEeeeccCCCcceeEEccCCcccccCCCCceEEEEEccCCCCCCccEEEEE
Q 007945 255 DAMGNFSPVVKQIRSGRKPD---GVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMF 331 (584)
Q Consensus 255 dADG~~S~v~rql~~~~~~~---~~~~~vg~~a~g~~~~~~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~L~ 331 (584)
+|||.+|.++++++...... ..+. +.......++......++ . ..+++| .||..++ ...+.+
T Consensus 161 ~AdG~~S~vr~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----~-----~~~~~~-~~P~~~~---~~~~~~ 225 (392)
T PRK09126 161 AADSRFSATRRQLGIGADMHDFGRTML-VCRMRHELPHHHTAWEWF-----G-----YGQTLA-LLPLNGH---LSSLVL 225 (392)
T ss_pred EeCCCCchhhHhcCCCccccccCCeEE-EEEEeccCCCCCEEEEEe-----c-----CCCCeE-EeECCCC---CEEEEE
Confidence 99999999999986543221 1111 111111011111100011 0 134556 5888755 333333
Q ss_pred EccCCCCC---CccHHHHHHHHHhhCcccccccCCceeEEEEEeeeeccccCCCCCccCCCEEEeCCCCCCcCCCCCCch
Q 007945 332 TYIDPQAG---SPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGF 408 (584)
Q Consensus 332 ~~~~~~~~---~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLvGDAA~~v~PltGgG~ 408 (584)
........ ..+.++..+++.+.++.. +........ ...+|.......++..+|++|+|||||.++|++|+|+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~ 300 (392)
T PRK09126 226 TLPPDQIEALLALDPEAFAAEVTARFKGR----LGAMRLVSS-RHAYPLVAVYAHRFVAKRFALIGDAAVGMHPVTAHGF 300 (392)
T ss_pred ECCHHHHHHHHcCCHHHHHHHHHHHHhhh----ccCeEEcCC-CcEeechHHHHHHHhhcceEEEehhhhcCCCcccchh
Confidence 33211000 011122222211222111 111111111 1223443222335678999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhCC-CCChhhhHhhhchhhhhh
Q 007945 409 GSLTRHLGRLSTGVYEAVRGD-FVDSYSLSLLNPYMPNLS 447 (584)
Q Consensus 409 g~~lr~~~~La~~i~~AL~~~-~ls~~~l~~L~~Ye~~~~ 447 (584)
+++++|+..|++.|..+++.+ +.+ .-+.|..|+...+
T Consensus 301 ~~ai~da~~la~~L~~~~~~~~~~~--~~~~l~~Y~~~r~ 338 (392)
T PRK09126 301 NLGLKGQDILARLILAAARRGQDIG--AASLLERYERKHR 338 (392)
T ss_pred hhhHHHHHHHHHHHHHHHhcCCCCc--cHHHHHHHHHHHH
Confidence 999999999999999988643 221 1223667776543
No 34
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=99.95 E-value=7.3e-26 Score=242.36 Aligned_cols=310 Identities=20% Similarity=0.172 Sum_probs=187.3
Q ss_pred CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCC------cccccCCHHHHHHHHHcCCCcccccchhhhcccC-C
Q 007945 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGR------EQEWNISRKELLELVESGILVEDDIDEATATKFN-P 181 (584)
Q Consensus 110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~------~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~-~ 181 (584)
.+||+|||| ++|+++|+.|++.|++|+|+||++.+.. .+...+++..++.|..+|++++.. . ..+. .
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~--~---~~~~~~ 79 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALD--A---ARLAPV 79 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhh--h---hcCCcc
Confidence 689999996 5799999999999999999999987542 122457888999999999875421 0 1110 0
Q ss_pred ceeeecCC--Ccccc------cccccceeCHHHHHHHHHHHHHhCC-CEEEeCceEEEEEEeCCeEEEEEcCCcEEEccE
Q 007945 182 NRCGFEGK--GEIWV------EDILNLGVSPAKLIEIVKKRFISLG-GVIFEGYSVSSICTYENAAVLLLAEGKILSSHL 252 (584)
Q Consensus 182 ~~v~f~~~--~~l~~------~~~l~~~vd~~~L~~~L~~~a~~~G-~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~Arl 252 (584)
..+.+.+. ..+.. .....+.+++..+++.|.+++.+.| ++++ +++++++..+++++.|++.+|++++|++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~~~v~~~~g~~~~a~~ 158 (388)
T PRK07608 80 YDMRVFGDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEVDPDAATLTLADGQVLRADL 158 (388)
T ss_pred eEEEEEECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecCCeEEEEECCCCEEEeeE
Confidence 11111110 00110 0112356889999999999999888 7888 9999999888888999988888999999
Q ss_pred EEEecCCChHHHhHhcCCCCC---CceeeEEEEeeeccCCCcceeEEccCCcccccCCCCceEEEEEccCCCCCCccEEE
Q 007945 253 IIDAMGNFSPVVKQIRSGRKP---DGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTY 329 (584)
Q Consensus 253 VIdADG~~S~v~rql~~~~~~---~~~~~~vg~~a~g~~~~~~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~ 329 (584)
||+|||.+|.+++.++..... ...+.+.... ...........++ . ..+++| .+|.+++ ....
T Consensus 159 vI~adG~~S~vr~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-----~-----~~~~~~-~~p~~~~---~~~~ 223 (388)
T PRK07608 159 VVGADGAHSWVRSQAGIKAERRPYRQTGVVANFK-AERPHRGTAYQWF-----R-----DDGILA-LLPLPDG---HVSM 223 (388)
T ss_pred EEEeCCCCchHHHhcCCCccccccCCEEEEEEEE-ecCCCCCEEEEEe-----c-----CCCCEE-EeECCCC---CeEE
Confidence 999999999999988654321 1222111000 0000000000011 1 134555 5788765 2222
Q ss_pred EEEccCCCC---CCccHHHHHHHHHhhCcccccccCCceeEEEEEeeeeccccCCCCCccCCCEEEeCCCCCCcCCCCCC
Q 007945 330 MFTYIDPQA---GSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFG 406 (584)
Q Consensus 330 L~~~~~~~~---~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLvGDAA~~v~PltGg 406 (584)
.+....... ...+.+++.+.+....+. .+..+....... .+|.......++..+|++++|||||.++|++|+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~~~~~~~~~~rv~liGDAAh~~~P~~Gq 298 (388)
T PRK07608 224 VWSARTAHADELLALSPEALAARVERASGG----RLGRLECVTPAA-GFPLRLQRVDRLVAPRVALVGDAAHLIHPLAGQ 298 (388)
T ss_pred EEECCHHHHHHHHCCCHHHHHHHHHHHHHH----hcCCceecCCcc-eeecchhhhhhhhcCceEEEeccccccCCcccc
Confidence 222211000 001112222222111111 011222111221 245443333456789999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhchhhhhh
Q 007945 407 GFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLS 447 (584)
Q Consensus 407 G~g~~lr~~~~La~~i~~AL~~~~ls~~~l~~L~~Ye~~~~ 447 (584)
|++++++|+..|++.|..+...++.. ..+.++.|+...+
T Consensus 299 G~n~ai~da~~La~~L~~~~~~~~~~--~~~~l~~Ye~~R~ 337 (388)
T PRK07608 299 GMNLGLRDVAALADVLAGREPFRDLG--DLRLLRRYERARR 337 (388)
T ss_pred ccchhHHHHHHHHHHHHHhhccCCCc--cHHHHHHHHHHHH
Confidence 99999999999999997764322221 2234778887543
No 35
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=99.95 E-value=1.4e-25 Score=250.87 Aligned_cols=308 Identities=17% Similarity=0.142 Sum_probs=183.7
Q ss_pred CCccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC-CcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeee
Q 007945 109 GTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG-REQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF 186 (584)
Q Consensus 109 ~~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~-~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f 186 (584)
.++||+|||| ++|+++|+.|+++|++|+||||++.+. ..+.+.++.+.++.|.++|++++.. .. ...+. .+.|
T Consensus 9 ~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~--~~-~~~~~--~~~~ 83 (538)
T PRK06183 9 HDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVL--PH-TTPNH--GMRF 83 (538)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHH--hh-cccCC--ceEE
Confidence 3699999995 579999999999999999999998654 3466789999999999999875421 10 00011 1111
Q ss_pred c--CCCcc-ccc--------ccccceeCHHHHHHHHHHHHHhC-CCEEEeCceEEEEEEeCCeEEEEEc--CC--cEEEc
Q 007945 187 E--GKGEI-WVE--------DILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLA--EG--KILSS 250 (584)
Q Consensus 187 ~--~~~~l-~~~--------~~l~~~vd~~~L~~~L~~~a~~~-G~~i~~~t~v~~v~~~~~gv~V~~~--~G--~~i~A 250 (584)
. .+..+ ..+ ....+.+.+..+++.|.+.+.+. |++++.++++++++.++++++|+++ +| ++++|
T Consensus 84 ~~~~g~~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~v~~~~~~G~~~~i~a 163 (538)
T PRK06183 84 LDAKGRCLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDGVTVTLTDADGQRETVRA 163 (538)
T ss_pred EcCCCCEEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeEEEEEEcCCCCEEEEEE
Confidence 1 00000 000 11123477888999999998875 8899999999999999999998886 45 47999
Q ss_pred cEEEEecCCChHHHhHhcCCCC---CCceeeEEEEeeeccC-CCcceeEEccCCcccccCCCCceEEEEEccCCCCCCcc
Q 007945 251 HLIIDAMGNFSPVVKQIRSGRK---PDGVCLVVGSCARGFK-DNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDR 326 (584)
Q Consensus 251 rlVIdADG~~S~v~rql~~~~~---~~~~~~~vg~~a~g~~-~~~~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~ 326 (584)
|+||+|||.+|.+|++++.... +...+.++.......+ .......++ .+ ++.++ .+|.+++ .
T Consensus 164 d~vVgADG~~S~vR~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~----~~~~~--~~p~~~~---~ 229 (538)
T PRK06183 164 RYVVGCDGANSFVRRTLGVPFEDLTFPERWLVVDVLIANDPLGGPHTYQYC-----DP----ARPYT--SVRLPHG---R 229 (538)
T ss_pred EEEEecCCCchhHHHHcCCeeeCCCccceEEEEEEecccCccCCCceEEEE-----CC----CCCEE--EEEcCCC---e
Confidence 9999999999999999865321 1111111110000000 000001111 11 12232 3565543 2
Q ss_pred EEEEEEccC-CCCCCccHHHHHHHHHhhCcccccccCCceeEEEEEeeeeccccCCCCCccCCCEEEeCCCCCCcCCCCC
Q 007945 327 TTYMFTYID-PQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSF 405 (584)
Q Consensus 327 ~~~L~~~~~-~~~~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLvGDAA~~v~PltG 405 (584)
..+.+.... .......-.+.+.++++... ......++... ..+........++..+||+|+|||||.++|+.|
T Consensus 230 ~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~--~~~~~~~~~a~~~~~gRv~L~GDAAH~~~P~~G 303 (538)
T PRK06183 230 RRWEFMLLPGETEEQLASPENVWRLLAPWG----PTPDDAELIRH--AVYTFHARVADRWRSGRVLLAGDAAHLMPPFAG 303 (538)
T ss_pred EEEEEEeCCCCChhhcCCHHHHHHHHHhhC----CCCcceEEEEE--EeeeEccEEhhhhccCCEEEEechhhcCCCccc
Confidence 223333221 11111111222333333221 01112222221 111111112335678999999999999999999
Q ss_pred CchhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhchhhh
Q 007945 406 GGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPN 445 (584)
Q Consensus 406 gG~g~~lr~~~~La~~i~~AL~~~~ls~~~l~~L~~Ye~~ 445 (584)
||+|++++|+..|++.|+..++. ...... |..|+..
T Consensus 304 QG~n~gi~DA~~La~kLa~~~~g-~~~~~~---L~~Ye~e 339 (538)
T PRK06183 304 QGMNSGIRDAANLAWKLAAVLRG-RAGDAL---LDTYEQE 339 (538)
T ss_pred cchhhhHHHHHHHHHHHHHHHcC-CCcHHH---HHHHHHH
Confidence 99999999999999999876643 223233 5566654
No 36
>PRK06184 hypothetical protein; Provisional
Probab=99.95 E-value=9e-26 Score=250.41 Aligned_cols=298 Identities=15% Similarity=0.117 Sum_probs=179.1
Q ss_pred CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCC-cccccCCHHHHHHHHHcCCCcccccchhhh---cccCC-ce
Q 007945 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEATA---TKFNP-NR 183 (584)
Q Consensus 110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~-~r~w~Is~~~l~~L~~lGl~~~~ele~~i~---~~~~~-~~ 183 (584)
++||+|||| ++|+++|+.|+++|++|+||||++.+.. .+.-.|++..++.|..+|++++..-..... ..|.. ..
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~ 82 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYRDDGS 82 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEeCCce
Confidence 589999995 6799999999999999999999986642 355678999999999999875421000000 01111 10
Q ss_pred e---eecCC--CcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEE---cCCcEEEccEEEE
Q 007945 184 C---GFEGK--GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLL---AEGKILSSHLIID 255 (584)
Q Consensus 184 v---~f~~~--~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~---~~G~~i~ArlVId 255 (584)
+ .+... .....+....+.+++..+++.|.+++.+.|++++.++++++++.+++++++++ .++++++||+||+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~i~a~~vVg 162 (502)
T PRK06184 83 VAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAGEETVRARYLVG 162 (502)
T ss_pred EEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeEEEEeCEEEE
Confidence 1 00000 00011112234578889999999999999999999999999999888888877 4567899999999
Q ss_pred ecCCChHHHhHhcCCCC---CCc-eeeEEEEeeeccCCCcceeEEccCCcccccCCCCceEEEEEccCCCCCCccEEEEE
Q 007945 256 AMGNFSPVVKQIRSGRK---PDG-VCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMF 331 (584)
Q Consensus 256 ADG~~S~v~rql~~~~~---~~~-~~~~vg~~a~g~~~~~~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~L~ 331 (584)
|||.+|.+|++++.... ... .+.+........+ ......+.. + ..+.+ ..+|..++. ...+.+
T Consensus 163 ADG~~S~vR~~lgi~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-----~----~~~~~-~~~p~~~~~--~~~~~~ 229 (502)
T PRK06184 163 ADGGRSFVRKALGIGFPGETLGIDRMLVADVSLTGLD-RDAWHQWPD-----G----DMGMI-ALCPLPGTD--LFQIQA 229 (502)
T ss_pred CCCCchHHHHhCCCCcccCcCCCceEEEEEEEeecCC-CcceEEccC-----C----CCcEE-EEEEccCCC--eEEEEE
Confidence 99999999999875432 111 2211111011111 011111110 0 11222 245655331 222222
Q ss_pred EccCCCCCCc---cHHHHHHHHHhhCcccccccCCceeEEEEEeeeeccccCCCCCccCCCEEEeCCCCCCcCCCCCCch
Q 007945 332 TYIDPQAGSP---KLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGF 408 (584)
Q Consensus 332 ~~~~~~~~~~---~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLvGDAA~~v~PltGgG~ 408 (584)
...+...... .+.+++.+++.. ....+..+.+ ...++.......++..+||+|+|||||.++|..|||+
T Consensus 230 ~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~----~~~~~~~~~~a~~~~~gRv~L~GDAAH~~~P~~GqG~ 301 (502)
T PRK06184 230 PLPPGGEPDLSADGLTALLAERTGR----TDIRLHSVTW----ASAFRMNARLADRYRVGRVFLAGDAAHVHPPAGGQGL 301 (502)
T ss_pred EcCCCccCCCCHHHHHHHHHHhcCC----CCcceeeeee----eeccccceeEhhhhcCCcEEEeccccccCCCcccccc
Confidence 2221111111 233333322211 1111111111 1122222122335678999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhC
Q 007945 409 GSLTRHLGRLSTGVYEAVRG 428 (584)
Q Consensus 409 g~~lr~~~~La~~i~~AL~~ 428 (584)
|++++|+..|++.|+.+++.
T Consensus 302 n~gi~DA~~LawkLa~vl~g 321 (502)
T PRK06184 302 NTSVQDAYNLGWKLAAVLAG 321 (502)
T ss_pred cchHHHHHHHHHHHHHHHcC
Confidence 99999999999999888764
No 37
>PRK07045 putative monooxygenase; Reviewed
Probab=99.95 E-value=1.5e-25 Score=240.33 Aligned_cols=317 Identities=14% Similarity=0.138 Sum_probs=185.6
Q ss_pred CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCc-ccccCCHHHHHHHHHcCCCcccccch-hhhc---ccCCce
Q 007945 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGRE-QEWNISRKELLELVESGILVEDDIDE-ATAT---KFNPNR 183 (584)
Q Consensus 110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~-r~w~Is~~~l~~L~~lGl~~~~ele~-~i~~---~~~~~~ 183 (584)
.+||+|||| ++|+++|..|+++|++|+|+||++.+... +...+++..++.|..+|+++...-.. .... .+....
T Consensus 5 ~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~ 84 (388)
T PRK07045 5 PVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLYHDKE 84 (388)
T ss_pred eeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEecCCc
Confidence 689999996 57999999999999999999999876432 33347888889999999875421000 0000 011111
Q ss_pred -eeecCCCcccccccccceeCHHHHHHHHHHHHHh-CCCEEEeCceEEEEEEeCCeE--EEEEcCCcEEEccEEEEecCC
Q 007945 184 -CGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAA--VLLLAEGKILSSHLIIDAMGN 259 (584)
Q Consensus 184 -v~f~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~-~G~~i~~~t~v~~v~~~~~gv--~V~~~~G~~i~ArlVIdADG~ 259 (584)
+....-... .+....+.+.+..|.+.|.+++.+ .|++++.+++++++..+++++ .|++++|++++|++||+|||.
T Consensus 85 ~~~~~~~~~~-~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~ 163 (388)
T PRK07045 85 LIASLDYRSA-SALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGA 163 (388)
T ss_pred EEEEecCCcc-ccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCC
Confidence 100000000 001112347888999999999865 478999999999998877663 577888899999999999999
Q ss_pred ChHHHhHh-cCCC---CCCceeeEEEEeeeccCCCcceeEEccCCcccccCCCCceEEEEEccCCCCCCccEEEEEEccC
Q 007945 260 FSPVVKQI-RSGR---KPDGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYID 335 (584)
Q Consensus 260 ~S~v~rql-~~~~---~~~~~~~~vg~~a~g~~~~~~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~L~~~~~ 335 (584)
+|.+|+++ +... ++...+. ++.....-.......+++. + ..+++| .||.+++ ...+.+.+..
T Consensus 164 ~S~vR~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-----~----~~~~~~-~~p~~~~---~~~~~~~~~~ 229 (388)
T PRK07045 164 RSMIRDDVLRMPAERVPYATPMA-FGTIALTDSVRECNRLYVD-----S----NQGLAY-FYPIGDQ---ATRLVVSFPA 229 (388)
T ss_pred ChHHHHHhhCCCcccCCCCccee-EEEEeccCCccccceEEEc-----C----CCceEE-EEEcCCC---cEEEEEEecc
Confidence 99999974 3221 1222221 1221110000011112211 1 245667 5887654 2222222221
Q ss_pred CCCC----CccHHHHHHHHHhhC-cccccccCCceeEEEEEeeeeccccCCCCCccCCCEEEeCCCCCCcCCCCCCchhh
Q 007945 336 PQAG----SPKLEELLERYWDLM-PEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGS 410 (584)
Q Consensus 336 ~~~~----~~~l~~l~~~~~~~l-p~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLvGDAA~~v~PltGgG~g~ 410 (584)
.... ....+++.+.+.+.+ +..... +..+.. ...+..+|+......++..+|++|+|||||.++|++|+|+|+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~grv~LiGDAAH~~~P~~GqG~n~ 307 (388)
T PRK07045 230 DEMQGYLADTTRTKLLARLNEFVGDESADA-MAAIGA-GTAFPLIPLGRMNLDRYHKRNVVLLGDAAHSIHPITGQGMNL 307 (388)
T ss_pred ccchhccCCCCHHHHHHHHhhhcCccchHH-HhccCc-ccccceeecCccccccccCCCEEEEEccccccCCCccccHHH
Confidence 1110 011222222222222 111110 111110 011223454432334667899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCChhhhHhhhchhhhh
Q 007945 411 LTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNL 446 (584)
Q Consensus 411 ~lr~~~~La~~i~~AL~~~~ls~~~l~~L~~Ye~~~ 446 (584)
+++|+..|++.|..++..+. + .-+.|+.|+..-
T Consensus 308 ai~Da~~La~~L~~~~~~~~-~--~~~~L~~Ye~~R 340 (388)
T PRK07045 308 AIEDAGELGACLDLHLSGQI-A--LADALERFERIR 340 (388)
T ss_pred HHHHHHHHHHHHHhhcCCch-h--HHHHHHHHHHHh
Confidence 99999999999988764421 1 122367777643
No 38
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=99.95 E-value=5e-26 Score=243.12 Aligned_cols=311 Identities=18% Similarity=0.192 Sum_probs=186.9
Q ss_pred cEEEEcc-hHHHHHHHHHHhCC-CeEEEEcCCCCCCCc-----ccccCCHHHHHHHHHcCCCcccccchhhhcc--c-CC
Q 007945 112 DVIVCGG-TLGIFIATALSFKG-LRVAIVERNTLKGRE-----QEWNISRKELLELVESGILVEDDIDEATATK--F-NP 181 (584)
Q Consensus 112 DVVIVGG-g~Gl~~Aa~LAr~G-lrVlLIEr~~~~~~~-----r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~--~-~~ 181 (584)
||+|||| ++|+++|..|+++| ++|+|+||.+.+... +...+++..++.|.++|+++...-....... + +.
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~ 80 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHVSDQ 80 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEEEcC
Confidence 8999996 57999999999999 999999999876532 3456888889999999987542110000000 0 00
Q ss_pred ---ceeeecCCCcccccccccceeCHHHHHHHHHHHHHhC-CCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEec
Q 007945 182 ---NRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAM 257 (584)
Q Consensus 182 ---~~v~f~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~-G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdAD 257 (584)
..+.+.. ..... ...++.+++..|.+.|.+++.+. |++++.+++|+++..++++++|++.+|++++||+||+||
T Consensus 81 ~~~~~~~~~~-~~~~~-~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~Ad 158 (382)
T TIGR01984 81 GHFGATHLRA-SEFGL-PALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAAD 158 (382)
T ss_pred CCCceEEech-hhcCC-CccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEec
Confidence 0111110 00111 11245689999999999999884 899999999999998888999998888899999999999
Q ss_pred CCChHHHhHhcCCCCCC---ceeeEEEEeeeccCCCcceeEEccCCcccccCCCCceEEEEEccCCCCCCccEEEEEEcc
Q 007945 258 GNFSPVVKQIRSGRKPD---GVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYI 334 (584)
Q Consensus 258 G~~S~v~rql~~~~~~~---~~~~~vg~~a~g~~~~~~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~L~~~~ 334 (584)
|.+|.++++++...... ..+... .+....+.......++ . ..+.++ .+|..++. ...+.+...
T Consensus 159 G~~S~vr~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~-----~~g~~~-~~p~~~~~--~~~~~~~~~ 224 (382)
T TIGR01984 159 GANSKVRELLSIPTEEHDYNQTALIA-NIRHEQPHQGCAFERF-----T-----PHGPLA-LLPLKDNY--RSSLVWCLP 224 (382)
T ss_pred CCChHHHHHcCCCCcccccCCEEEEE-EEEecCCCCCEEEEee-----C-----CCCCeE-ECcCCCCC--CEEEEEECC
Confidence 99999999987543211 222111 1111111100000000 0 012233 47876541 222222221
Q ss_pred CCCCC---CccHHHHHHHHHhhCcccccccCCceeEEEEEeeeeccccCCCCCccCCCEEEeCCCCCCcCCCCCCchhhH
Q 007945 335 DPQAG---SPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSL 411 (584)
Q Consensus 335 ~~~~~---~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLvGDAA~~v~PltGgG~g~~ 411 (584)
..... ..+.++..+++.+.++.. +..+..... ...+|.......++..+||+|+|||||.++|++|+|++++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~~~a 299 (382)
T TIGR01984 225 SKQADTIANLPDAEFLAELQQAFGWR----LGKITQVGE-RKTYPLKLRIAETHVHPRVVLIGNAAQTLHPIAGQGFNLG 299 (382)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhh----ccCeEEcCC-ccEeecchhhhhheecCCEEEEeecccccCCccccchhhh
Confidence 10000 011222233332222110 111111111 1234444323335677999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCChhhhHhhhchhhhhh
Q 007945 412 TRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLS 447 (584)
Q Consensus 412 lr~~~~La~~i~~AL~~~~ls~~~l~~L~~Ye~~~~ 447 (584)
++|+..|++.|..++. +.... +.++.|+...+
T Consensus 300 l~Da~~La~~L~~~~~-~~~~~---~~l~~Y~~~r~ 331 (382)
T TIGR01984 300 LRDVETLAEVLIDARI-DLGTY---ALLQEYLRRRQ 331 (382)
T ss_pred HHHHHHHHHHHHHhcc-CccCH---HHHHHHHHHHH
Confidence 9999999999987652 11112 23677887543
No 39
>PRK11445 putative oxidoreductase; Provisional
Probab=99.95 E-value=6.1e-25 Score=233.04 Aligned_cols=312 Identities=13% Similarity=0.120 Sum_probs=183.2
Q ss_pred CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC----C-cccccCCHHHHHHHHHcCCCcccc-cchhhhcccCCc
Q 007945 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG----R-EQEWNISRKELLELVESGILVEDD-IDEATATKFNPN 182 (584)
Q Consensus 110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~----~-~r~w~Is~~~l~~L~~lGl~~~~e-le~~i~~~~~~~ 182 (584)
.|||+|||| ++|+++|..|+++ ++|+||||++... . +....++++.++.|..+|++.... +.. ...+...
T Consensus 1 ~~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~--~~~~~~~ 77 (351)
T PRK11445 1 HYDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIAN--PQIFAVK 77 (351)
T ss_pred CceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeec--cccceee
Confidence 389999995 6799999999999 9999999997532 1 133468999999999999864311 111 0011111
Q ss_pred eeeecCCCccccccc-ccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEE-cCCc--EEEccEEEEecC
Q 007945 183 RCGFEGKGEIWVEDI-LNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLL-AEGK--ILSSHLIIDAMG 258 (584)
Q Consensus 183 ~v~f~~~~~l~~~~~-l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~-~~G~--~i~ArlVIdADG 258 (584)
.+.+.. .+..... ..+.+++..|++.|.+. .+.|++++.++.++++..+++++.|++ .+|+ +++|++||+|||
T Consensus 78 ~~~~~~--~~~~~~~~~~~~i~R~~~~~~L~~~-~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~a~~vV~AdG 154 (351)
T PRK11445 78 TIDLAN--SLTRNYQRSYINIDRHKFDLWLKSL-IPASVEVYHNSLCRKIWREDDGYHVIFRADGWEQHITARYLVGADG 154 (351)
T ss_pred Eecccc--cchhhcCCCcccccHHHHHHHHHHH-HhcCCEEEcCCEEEEEEEcCCEEEEEEecCCcEEEEEeCEEEECCC
Confidence 121111 1100011 12358999999999885 467899999999999998888888876 4564 799999999999
Q ss_pred CChHHHhHhcCCCCCCceeeEEEEeeeccCCCcceeEEccCCcccccCCCCceEEEEEccCCCCCCccEEEEEEccCCCC
Q 007945 259 NFSPVVKQIRSGRKPDGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQA 338 (584)
Q Consensus 259 ~~S~v~rql~~~~~~~~~~~~vg~~a~g~~~~~~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~L~~~~~~~~ 338 (584)
.+|.++++++...+..... .+..........+...+++... . ..+|.| .||..+. ..+.+.+.. .
T Consensus 155 ~~S~vr~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~f~~~-~------~~~~~W-~~p~~~~----~~~g~~~~~--~ 219 (351)
T PRK11445 155 ANSMVRRHLYPDHQIRKYV-AIQQWFAEKHPVPFYSCIFDNE-I------TDCYSW-SISKDGY----FIFGGAYPM--K 219 (351)
T ss_pred CCcHHhHHhcCCCchhhEE-EEEEEecCCCCCCCcceEEecc-C------CCceEE-EeCCCCc----EEecccccc--c
Confidence 9999999886432211110 1111110000111111222211 1 247899 6898643 222122211 1
Q ss_pred CCccHHHHHHHHHhhCcccccccCCceeEEEEEeeeeccccCCCC-CccCCCEEEeCCCCCCcCCCCCCchhhHHHHHHH
Q 007945 339 GSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPL-PAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGR 417 (584)
Q Consensus 339 ~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~-~~~~~rvlLvGDAA~~v~PltGgG~g~~lr~~~~ 417 (584)
......+.+.+++..+.. ..++. .+...+.++....... ....+|+++||||||++||++|+|++.+++++..
T Consensus 220 ~~~~~~~~l~~~l~~~~~----~~~~~--~~~~~~~~~~~~~~~~~~~~~~~vvlVGDAAg~i~P~tG~Gi~~al~sa~~ 293 (351)
T PRK11445 220 DGRERFETLKEKLSAFGF----QFGKP--VKTEACTVLRPSRWQDFVCGKDNAFLIGEAAGFISPSSLEGISYALDSARI 293 (351)
T ss_pred chHHHHHHHHHHHHhccc----ccccc--cccccccccCcccccccccCCCCEEEEEcccCccCCccCccHHHHHHhHHH
Confidence 111111122223322211 01111 1112222222111111 2235899999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCChhhhHhhhchhhhhhHHH--HHHHHhh
Q 007945 418 LSTGVYEAVRGDFVDSYSLSLLNPYMPNLSASW--LFQRAMS 457 (584)
Q Consensus 418 La~~i~~AL~~~~ls~~~l~~L~~Ye~~~~~~~--~l~k~m~ 457 (584)
|++.|.++.+ .. ++.|++.++.-- +|.|.+.
T Consensus 294 la~~l~~~~~------~~---~~~y~~~~~~~~~~~~~~~~~ 326 (351)
T PRK11445 294 LSEVLNKQPE------KL---NTAYWRKTRKLRLKLFGKILK 326 (351)
T ss_pred HHHHHHhccc------ch---HHHHHHHHHHHHHHHHHHHhc
Confidence 9998876542 22 667887665542 4555553
No 40
>PTZ00367 squalene epoxidase; Provisional
Probab=99.94 E-value=1.9e-24 Score=241.38 Aligned_cols=298 Identities=15% Similarity=0.172 Sum_probs=167.8
Q ss_pred CccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCC--CcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeee
Q 007945 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG--REQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF 186 (584)
Q Consensus 110 ~yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~--~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f 186 (584)
+||||||||| +|+++|..|+++|++|+|+||++... ......+++..++.|+++|+++..+ .. ........+..
T Consensus 33 ~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~~~~~~r~~G~~L~p~g~~~L~~LGL~d~l~--~i-~~~~~~~~v~~ 109 (567)
T PTZ00367 33 DYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDLFSKPDRIVGELLQPGGVNALKELGMEECAE--GI-GMPCFGYVVFD 109 (567)
T ss_pred CccEEEECCCHHHHHHHHHHHhcCCEEEEEccccccccchhhhhhcCHHHHHHHHHCCChhhHh--hc-CcceeeeEEEE
Confidence 6999999965 69999999999999999999986322 2223358899999999999986421 11 11111111111
Q ss_pred cCCCccccc---ccccceeCHHHHHHHHHHHH---HhCCCEEEeCceEEEEEEeCC-------eEEEEEcC---------
Q 007945 187 EGKGEIWVE---DILNLGVSPAKLIEIVKKRF---ISLGGVIFEGYSVSSICTYEN-------AAVLLLAE--------- 244 (584)
Q Consensus 187 ~~~~~l~~~---~~l~~~vd~~~L~~~L~~~a---~~~G~~i~~~t~v~~v~~~~~-------gv~V~~~~--------- 244 (584)
..+..+..+ ...+..+.+..+.+.|.+++ ...++++++ ++++++..+++ +++++..+
T Consensus 110 ~~G~~~~i~~~~~~~g~~~~rg~~~~~Lr~~a~~~~~~~V~v~~-~~v~~l~~~~~~~~~~v~gV~~~~~~~~~~~~~~f 188 (567)
T PTZ00367 110 HKGKQVKLPYGAGASGVSFHFGDFVQNLRSHVFHNCQDNVTMLE-GTVNSLLEEGPGFSERAYGVEYTEAEKYDVPENPF 188 (567)
T ss_pred CCCCEEEecCCCCCceeEeEHHHHHHHHHHHHHhhcCCCcEEEE-eEEEEeccccCccCCeeEEEEEecCCccccccccc
Confidence 111111111 11123456777888888877 334778865 47887755433 35555444
Q ss_pred --------------CcEEEccEEEEecCCChHHHhHhcCCCC-CCceeeEEEEeeecc--CCCcceeEEccCCcccccCC
Q 007945 245 --------------GKILSSHLIIDAMGNFSPVVKQIRSGRK-PDGVCLVVGSCARGF--KDNSTSDVIYSSSSVKKVGD 307 (584)
Q Consensus 245 --------------G~~i~ArlVIdADG~~S~v~rql~~~~~-~~~~~~~vg~~a~g~--~~~~~~di~~~~~~~~~~~~ 307 (584)
+++++|++||+|||.+|.+|++++...+ .+......+...... +....+.++++
T Consensus 189 ~~~~~~~~~~~~~~g~~~~AdLvVgADG~~S~vR~~l~~~~~~~~~~s~~~g~~~~~~~lp~~~~~~v~~g--------- 259 (567)
T PTZ00367 189 REDPPSANPSATTVRKVATAPLVVMCDGGMSKFKSRYQHYTPASENHSHFVGLVLKNVRLPKEQHGTVFLG--------- 259 (567)
T ss_pred ccccccccccccccceEEEeCEEEECCCcchHHHHHccCCCCCcCcceEEEEEEEecccCCCCCeeEEEEc---------
Confidence 5689999999999999999999864322 111111122222211 12222333321
Q ss_pred CCceEEEEEccCCCCCCccEEEEEEccCC-CCCCccHHHHHHHHHh-hCcc-cccccCCceeEEEEEeeeeccccCCCCC
Q 007945 308 SEVQLFWEAFPAGSGPLDRTTYMFTYIDP-QAGSPKLEELLERYWD-LMPE-YQGVTLDNLEIQRVIYGIFPTYRDSPLP 384 (584)
Q Consensus 308 ~~~~~~W~~fP~~~g~~~~~~~L~~~~~~-~~~~~~l~~l~~~~~~-~lp~-~~~~~l~~~~~~~~~~g~~P~~~~~~~~ 384 (584)
..+.+| .||.+++ ....+..+... .+......+.+.+... .+|+ ++..-...+.-... .-..|.+...+.+
T Consensus 260 -~~gpi~-~yPl~~~---~~r~lv~~~~~~~p~~~~~~~~l~~~~~p~l~~~l~~~f~~~l~~~~~-l~~~p~~~~p~~~ 333 (567)
T PTZ00367 260 -KTGPIL-SYRLDDN---ELRVLVDYNKPTLPSLEEQSEWLIEDVAPHLPENMRESFIRASKDTKR-IRSMPNARYPPAF 333 (567)
T ss_pred -CCceEE-EEEcCCC---eEEEEEEecCCcCCChHHHHHHHHHhhcccCcHHHHHHHHHhhcccCC-eEEeeHhhCCCcc
Confidence 134566 5898765 22223333221 1110112222221111 1111 11000000000000 1123444323345
Q ss_pred ccCCCEEEeCCCCCCcCCCCCCchhhHHHHHHHHHHHHHHHH
Q 007945 385 AAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAV 426 (584)
Q Consensus 385 ~~~~rvlLvGDAA~~v~PltGgG~g~~lr~~~~La~~i~~AL 426 (584)
+..+|++|+|||||++||++|||++++++|+..|++.|..+.
T Consensus 334 ~~~~gvvLIGDAAH~mhP~~GQGmn~AleDA~~La~~L~~~~ 375 (567)
T PTZ00367 334 PSIKGYVGIGDHANQRHPLTGGGMTCCFSDCIRLAKSLTGIK 375 (567)
T ss_pred CCCCCEEEEEcccCCCCCcccccHHHHHHHHHHHHHHHHhhh
Confidence 567899999999999999999999999999999999987643
No 41
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=99.93 E-value=4.1e-24 Score=239.58 Aligned_cols=314 Identities=15% Similarity=0.128 Sum_probs=183.6
Q ss_pred CCccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC-CcccccCCHHHHHHHHHcCCCcccccchhhh---ccc-CCc
Q 007945 109 GTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG-REQEWNISRKELLELVESGILVEDDIDEATA---TKF-NPN 182 (584)
Q Consensus 109 ~~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~-~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~---~~~-~~~ 182 (584)
..+||+|||| ++|+++|+.|+++|++|+||||++... ..+.+.++...++.|.++|++++..-..... ..+ ...
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~ 101 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERMVDKGVSWNVGKVFLRDE 101 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHHHHhhCceeeceeEEeCCC
Confidence 4699999995 679999999999999999999998543 3456789999999999999875421000000 001 000
Q ss_pred e-eeecCCCcccccccccceeCHHHHHHHHHHHHHhC-CCEEEeCceEEEEEEeCCeEEEEEc--CCc-EEEccEEEEec
Q 007945 183 R-CGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLA--EGK-ILSSHLIIDAM 257 (584)
Q Consensus 183 ~-v~f~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~-G~~i~~~t~v~~v~~~~~gv~V~~~--~G~-~i~ArlVIdAD 257 (584)
. ..|.............+.+.+..|++.|.+++.+. +++++.+++++++..+++++++++. +|. +++|++||+||
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~ad~vVgAD 181 (547)
T PRK08132 102 EVYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETPDGPYTLEADWVIACD 181 (547)
T ss_pred eEEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECCCCcEEEEeCEEEECC
Confidence 0 11110000000011123467888999999999876 6799999999999988888877664 344 79999999999
Q ss_pred CCChHHHhHhcCCCC---CCceeeEEEEeee-ccCCCcceeEEccCCcccccCCCCceEEEEEccCCCCCCccEEEEEEc
Q 007945 258 GNFSPVVKQIRSGRK---PDGVCLVVGSCAR-GFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTY 333 (584)
Q Consensus 258 G~~S~v~rql~~~~~---~~~~~~~vg~~a~-g~~~~~~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~L~~~ 333 (584)
|.+|.+|++++.... +...+.++..... .++ .....++. .+.. ...++| .+|.+++ ...+-+..
T Consensus 182 G~~S~vR~~lg~~~~g~~~~~~~~~~d~~~~~~~~--~~~~~~~~-~~~~-----~~~~~~-~~~~~~~---~~~~~~~~ 249 (547)
T PRK08132 182 GARSPLREMLGLEFEGRTFEDRFLIADVKMKADFP--TERWFWFD-PPFH-----PGQSVL-LHRQPDN---VWRIDFQL 249 (547)
T ss_pred CCCcHHHHHcCCCCCCccccceEEEEEEEecCCCC--CeeeEEEe-ccCC-----CCcEEE-EEeCCCC---eEEEEEec
Confidence 999999999875322 1121211111110 111 01111111 1111 123454 3555433 11111211
Q ss_pred cC-CCCC-CccHHHHHHHHHhhCcccccccCCceeEEEEEeeeeccccCCCCCccCCCEEEeCCCCCCcCCCCCCchhhH
Q 007945 334 ID-PQAG-SPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSL 411 (584)
Q Consensus 334 ~~-~~~~-~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLvGDAA~~v~PltGgG~g~~ 411 (584)
.. .... ..+.++..+...+.++. ....++.. ...++.......++..+||+|+|||||.++|..|||+|++
T Consensus 250 ~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~--~~~~~~~~~~a~~~~~gRV~L~GDAAH~~~P~~GqG~n~g 322 (547)
T PRK08132 250 GWDADPEAEKKPENVIPRVRALLGE-----DVPFELEW--VSVYTFQCRRMDRFRHGRVLFAGDAAHQVSPFGARGANSG 322 (547)
T ss_pred CCCCCchhhcCHHHHHHHHHHHcCC-----CCCeeEEE--EEeeeeeeeeecccccccEEEEecccccCCCcccccccch
Confidence 11 1111 11222222222222221 01122111 1122332223346778999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCChhhhHhhhchhhh
Q 007945 412 TRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPN 445 (584)
Q Consensus 412 lr~~~~La~~i~~AL~~~~ls~~~l~~L~~Ye~~ 445 (584)
++|+..|++.|+..++. ..+.. .|..|+..
T Consensus 323 i~DA~~LawkLa~vl~g-~~~~~---lL~~Ye~e 352 (547)
T PRK08132 323 IQDADNLAWKLALVLRG-RAPDS---LLDSYASE 352 (547)
T ss_pred HHHHHHHHHHHHHHHcC-CCcHH---HHHHHHHH
Confidence 99999999999988754 33333 35666653
No 42
>PLN02985 squalene monooxygenase
Probab=99.93 E-value=2.5e-23 Score=230.90 Aligned_cols=298 Identities=16% Similarity=0.182 Sum_probs=163.7
Q ss_pred CCCccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCC-CcccccCCHHHHHHHHHcCCCcccccchhhhcccCCce--
Q 007945 108 VGTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG-REQEWNISRKELLELVESGILVEDDIDEATATKFNPNR-- 183 (584)
Q Consensus 108 ~~~yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~-~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~-- 183 (584)
+.+|||+||||| +|+++|+.|+++|++|+|+||.+... ......+++..++.|.++|+++.. +......+....
T Consensus 41 ~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~~~~g~~L~p~g~~~L~~LGl~d~l--~~~~~~~~~~~~v~ 118 (514)
T PLN02985 41 DGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERMMGEFMQPGGRFMLSKLGLEDCL--EGIDAQKATGMAVY 118 (514)
T ss_pred CCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCccccccccCchHHHHHHHcCCcchh--hhccCcccccEEEE
Confidence 447999999965 79999999999999999999986422 112334777888999999998642 211111111111
Q ss_pred -------eeecCCCcccccccccceeCHHHHHHHHHHHHHhC-CCEEEeCceEEEEEEeCCe---EEEEEcCCc--EEEc
Q 007945 184 -------CGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENA---AVLLLAEGK--ILSS 250 (584)
Q Consensus 184 -------v~f~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~-G~~i~~~t~v~~v~~~~~g---v~V~~~~G~--~i~A 250 (584)
+.|.....-......++.+++..|.+.|.+++.+. ++++..+ +++++..+++. +++...+|+ +++|
T Consensus 119 ~~g~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~i~~g-tvv~li~~~~~v~gV~~~~~dG~~~~~~A 197 (514)
T PLN02985 119 KDGKEAVAPFPVDNNNFPYEPSARSFHNGRFVQRLRQKASSLPNVRLEEG-TVKSLIEEKGVIKGVTYKNSAGEETTALA 197 (514)
T ss_pred ECCEEEEEeCCCCCcCCCcccceeeeecHHHHHHHHHHHHhCCCeEEEee-eEEEEEEcCCEEEEEEEEcCCCCEEEEEC
Confidence 11110000000012235688999999999999877 4677654 57777655543 333334564 4789
Q ss_pred cEEEEecCCChHHHhHhcCCCCCCceeeEEEEeeecc--CCCcceeEEccCCcccccCCCCceEEEEEccCCCCCCccEE
Q 007945 251 HLIIDAMGNFSPVVKQIRSGRKPDGVCLVVGSCARGF--KDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTT 328 (584)
Q Consensus 251 rlVIdADG~~S~v~rql~~~~~~~~~~~~vg~~a~g~--~~~~~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~ 328 (584)
++||+|||.+|.+|++++...+...... ++...... ++.....++++ ..+.+. .+|.++++ ..
T Consensus 198 dLVVgADG~~S~vR~~l~~~~~~~~s~~-~~~~~~~~~~~~~~~~~~~~~----------~~~~~l-~ypi~~~~---~~ 262 (514)
T PLN02985 198 PLTVVCDGCYSNLRRSLNDNNAEVLSYQ-VGYISKNCRLEEPEKLHLIMS----------KPSFTM-LYQISSTD---VR 262 (514)
T ss_pred CEEEECCCCchHHHHHhccCCCcceeEe-EEEEEccccCCCCCcceEEcC----------CCceEE-EEEeCCCe---EE
Confidence 9999999999999999865332211111 11111111 11112222221 112333 46766542 22
Q ss_pred EEEEccCCC-CC--CccHHHHHHHHH-hhCcc-cccccCCceeEEEEEeeeeccccCCCCCccCCCEEEeCCCCCCcCCC
Q 007945 329 YMFTYIDPQ-AG--SPKLEELLERYW-DLMPE-YQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPV 403 (584)
Q Consensus 329 ~L~~~~~~~-~~--~~~l~~l~~~~~-~~lp~-~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLvGDAA~~v~Pl 403 (584)
.+....... +. ...+.+.+.+.. ..+|+ ++..-....+-. ..+-..|.+.........+|++|+|||||++||+
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~l~~~f~~~~~~~-~~~~~~p~~~l~~~~~~~~~vvLiGDAaH~~~P~ 341 (514)
T PLN02985 263 CVFEVLPDNIPSIANGEMSTFVKNTIAPQVPPKLRKIFLKGIDEG-AHIKVVPTKRMSATLSDKKGVIVLGDAFNMRHPA 341 (514)
T ss_pred EEEEEeCCCCCCcChhhHHHHHHhccccccCHHHHHHHHhhcccc-cceeecCcccccccccCCCCEEEEecccccCCCC
Confidence 222222111 10 012222222211 11111 111100000000 0011234332222233468999999999999999
Q ss_pred CCCchhhHHHHHHHHHHHHHH
Q 007945 404 SFGGFGSLTRHLGRLSTGVYE 424 (584)
Q Consensus 404 tGgG~g~~lr~~~~La~~i~~ 424 (584)
+|||+++++.|+..|++.|..
T Consensus 342 ~GQGmn~AleDA~vLa~lL~~ 362 (514)
T PLN02985 342 IASGMMVLLSDILILRRLLQP 362 (514)
T ss_pred ccccHhHHHHHHHHHHHHhhh
Confidence 999999999999999988865
No 43
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.93 E-value=1.2e-23 Score=225.68 Aligned_cols=316 Identities=16% Similarity=0.165 Sum_probs=185.6
Q ss_pred CccEEEEcc-hHHHHHHHHHHhC---CCeEEEEcCCCCCC------CcccccCCHHHHHHHHHcCCCcccccchhhhcc-
Q 007945 110 TFDVIVCGG-TLGIFIATALSFK---GLRVAIVERNTLKG------REQEWNISRKELLELVESGILVEDDIDEATATK- 178 (584)
Q Consensus 110 ~yDVVIVGG-g~Gl~~Aa~LAr~---GlrVlLIEr~~~~~------~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~- 178 (584)
.|||+|||| ++|+++|+.|+++ |++|+|+||..... ..+...++...++.|..+|++++..-.......
T Consensus 3 ~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~ 82 (395)
T PRK05732 3 RMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCATPITHI 82 (395)
T ss_pred cCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHhhcCCccEE
Confidence 689999996 5799999999998 99999999963221 123456888889999999998642211100000
Q ss_pred -c-CCc---eeeecCCCcccccccccceeCHHHHHHHHHHHHHhC-CCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccE
Q 007945 179 -F-NPN---RCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLAEGKILSSHL 252 (584)
Q Consensus 179 -~-~~~---~v~f~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~-G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~Arl 252 (584)
+ +.. .+.+.. .....+ ..++.+++..|.+.|.+.+.+. |++++.+++++++..+++++.|++++|.+++|++
T Consensus 83 ~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~ 160 (395)
T PRK05732 83 HVSDRGHAGFVRLDA-EDYGVP-ALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERTQGSVRVTLDDGETLTGRL 160 (395)
T ss_pred EEecCCCCceEEeeh-hhcCCC-ccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCE
Confidence 0 000 011110 011111 1235678888999999988775 7899999999999888888999988888999999
Q ss_pred EEEecCCChHHHhHhcCCCCCC---ceeeEEEEeeeccCCCcceeEEccCCcccccCCCCceEEEEEccCCCCCCccEEE
Q 007945 253 IIDAMGNFSPVVKQIRSGRKPD---GVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTY 329 (584)
Q Consensus 253 VIdADG~~S~v~rql~~~~~~~---~~~~~vg~~a~g~~~~~~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~ 329 (584)
||+|||.+|.++++++...... ..+. ...+.. ........+.. ..+ .+.++ .+|.+++. ..+
T Consensus 161 vI~AdG~~S~vr~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~---~~~-----~g~~~-~~p~~~g~---~~~ 225 (395)
T PRK05732 161 LVAADGSHSALREALGIDWQQHPYEQVAV-IANVTT--SEAHQGRAFER---FTE-----HGPLA-LLPMSDGR---CSL 225 (395)
T ss_pred EEEecCCChhhHHhhCCCccceecCCEEE-EEEEEe--cCCCCCEEEEe---ecC-----CCCEE-EeECCCCC---eEE
Confidence 9999999999999886543211 1121 111110 00001111110 001 12344 47776652 222
Q ss_pred EEEccCCCC---CCccHHHHHHHHHhhCcccccccCCceeEEEEEeeeeccccCCCCCccCCCEEEeCCCCCCcCCCCCC
Q 007945 330 MFTYIDPQA---GSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFG 406 (584)
Q Consensus 330 L~~~~~~~~---~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLvGDAA~~v~PltGg 406 (584)
.+....... ...+..+..+.+.+.++. . +..+..... ...+|+....+.++..+|++|+|||||.++|++|+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~-~~~~~l~~~~~~~~~~grv~LvGDAAh~~~P~~Gq 300 (395)
T PRK05732 226 VWCHPLEDAEEVLSWSDAQFLAELQQAFGW-R---LGRITHAGK-RSAYPLALVTAAQQISHRLALVGNAAQTLHPIAGQ 300 (395)
T ss_pred EEECCHHHHHHHHcCCHHHHHHHHHHHHHh-h---hcceeecCC-cceecccccchhhhccCcEEEEeecccccCCcccc
Confidence 222111000 001222233333222211 0 111110000 11234332233456789999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhchhhhhhH
Q 007945 407 GFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLSA 448 (584)
Q Consensus 407 G~g~~lr~~~~La~~i~~AL~~~~ls~~~l~~L~~Ye~~~~~ 448 (584)
|++.+++|+..|++.|+.+++.+. +...-+.++.|+.+.+.
T Consensus 301 G~~~al~Da~~La~~L~~~~~~~~-~~~~~~~l~~Y~~~R~~ 341 (395)
T PRK05732 301 GFNLGLRDVMSLAETLTQALARGE-DIGDYAVLQRYQQRRQQ 341 (395)
T ss_pred ccchHHHHHHHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHH
Confidence 999999999999999998876432 11111336778875543
No 44
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=99.93 E-value=1e-23 Score=225.29 Aligned_cols=340 Identities=15% Similarity=0.174 Sum_probs=200.3
Q ss_pred cEEEEcch-HHHHHHHHHHhC--CCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecC
Q 007945 112 DVIVCGGT-LGIFIATALSFK--GLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG 188 (584)
Q Consensus 112 DVVIVGGg-~Gl~~Aa~LAr~--GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~ 188 (584)
||+||||| +|+++|+.|+++ |++|+|+|+.+..+..+.|..+..++.... ...++.++.+.|+...+.+..
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~------~~~~~~~v~~~W~~~~v~~~~ 74 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQ------HAWLADLVQTDWPGYEVRFPK 74 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhh------hhhhhhhheEeCCCCEEECcc
Confidence 89999965 699999999987 999999999987666677776654332211 112455667778776666543
Q ss_pred CCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChHHHhHhc
Q 007945 189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIR 268 (584)
Q Consensus 189 ~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~v~rql~ 268 (584)
... .....+ +.|++..|.+.|.+++.. + ++.+++|+++ +++++++ ++|++++|++||||+|.+|+-....
T Consensus 75 ~~~-~l~~~Y-~~I~r~~f~~~l~~~l~~-~--i~~~~~V~~v--~~~~v~l--~dg~~~~A~~VI~A~G~~s~~~~~~- 144 (370)
T TIGR01789 75 YRR-KLKTAY-RSMTSTRFHEGLLQAFPE-G--VILGRKAVGL--DADGVDL--APGTRINARSVIDCRGFKPSAHLKG- 144 (370)
T ss_pred hhh-hcCCCc-eEEEHHHHHHHHHHhhcc-c--EEecCEEEEE--eCCEEEE--CCCCEEEeeEEEECCCCCCCccccc-
Confidence 211 111222 468889999999877643 3 7778999987 5566555 6889999999999999998522211
Q ss_pred CCCCCCceeeEEEEeee---ccCCCcceeEEccCCcccccCCCCceEEEEEccCCCCCCccEEEEEEccCCCC----CCc
Q 007945 269 SGRKPDGVCLVVGSCAR---GFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQA----GSP 341 (584)
Q Consensus 269 ~~~~~~~~~~~vg~~a~---g~~~~~~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~L~~~~~~~~----~~~ 341 (584)
+ .....|...+ .++ .+.. ++.+...-+ .++..++. +-|.+++ ..+ +.+....+ ...
T Consensus 145 -~-----~Q~f~G~~~r~~~p~~-~~~~-~lMD~~~~q---~~g~~F~Y-~lP~~~~----~~l-vE~T~~s~~~~l~~~ 207 (370)
T TIGR01789 145 -G-----FQVFLGREMRLQEPHG-LENP-IIMDATVDQ---LAGYRFVY-VLPLGSH----DLL-IEDTYYADDPLLDRN 207 (370)
T ss_pred -e-----eeEEEEEEEEEcCCCC-CCcc-EEEeeeccC---CCCceEEE-ECcCCCC----eEE-EEEEeccCCCCCCHH
Confidence 1 1111122111 111 1111 111111101 01223332 4566543 122 11111011 112
Q ss_pred cHHHHHHHHHhhCcccccccCCceeEEEEEeeeeccccCC--C-CCccCCCEEEeCCCCCCcCCCCCCchhhHHHHHHHH
Q 007945 342 KLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDS--P-LPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRL 418 (584)
Q Consensus 342 ~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~--~-~~~~~~rvlLvGDAA~~v~PltGgG~g~~lr~~~~L 418 (584)
.+++.+.+|.+.. + ....++.+.+.|.+|+.... + .....++++++|||||++||.||||++.+++++..|
T Consensus 208 ~l~~~l~~~~~~~----g--~~~~~i~~~e~g~iPm~~~~~~~~~~~~~~~v~~iG~AAg~~~P~tGyg~~~a~~~a~~l 281 (370)
T TIGR01789 208 ALSQRIDQYARAN----G--WQNGTPVRHEQGVLPVLLGGDFSAYQDEVRIVAIAGLRAGLTHPTTGYSLPVAVENADAL 281 (370)
T ss_pred HHHHHHHHHHHHh----C--CCceEEEEeeeeEEeeecCCCcccccccCCceeeeecccccccccccccHHHHHHHHHHH
Confidence 4445555555432 2 23344556667899984421 1 112356799999999999999999999999987777
Q ss_pred HHHHHHHHhCC-CCChhhhHhhhchhhh-----hhHHHHHHHHhhccccCCCChHHHHHHHHHHHHHHHhcCCccccccc
Q 007945 419 STGVYEAVRGD-FVDSYSLSLLNPYMPN-----LSASWLFQRAMSAKQQSDVSPDFINELLYVNFQCMQKLGDPVLRPFL 492 (584)
Q Consensus 419 a~~i~~AL~~~-~ls~~~l~~L~~Ye~~-----~~~~~~l~k~m~~~~~~~~~~~~in~ll~~~f~~~~~lp~~~~~~fl 492 (584)
++.+. + ++ .+. +.+..|... -.-.++...+|... . ++....||..|++||++.+..||
T Consensus 282 a~~~~--~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ll~~~-----~----~~~~~~~f~~~f~l~~~~~~rFl 345 (370)
T TIGR01789 282 AAQPD--L-SSEQLA----AFIDSRARRHWSKTGYYRLLNRMLFFAA-----K----PEKRVRVFQRFYGLREGLIERFY 345 (370)
T ss_pred HhccC--c-Cccchh----hhhhHHHHHHHHHhHHHHHHHHHHhccC-----C----chhHHHHHHHHhCCCHHHHHHHH
Confidence 75442 0 21 111 012223322 11122233333111 1 23668888999999999999999
Q ss_pred ccccchhHHHHHHH
Q 007945 493 QDVIKFGPLAKTLG 506 (584)
Q Consensus 493 ~d~~~~~~l~~~~~ 506 (584)
.++.++.+..++|.
T Consensus 346 ~~~~~~~~~~~i~~ 359 (370)
T TIGR01789 346 AARSNTFDKLRVLW 359 (370)
T ss_pred hcCCCHHHHHHHHc
Confidence 99999999888774
No 45
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=99.93 E-value=1e-23 Score=226.82 Aligned_cols=298 Identities=15% Similarity=0.150 Sum_probs=163.3
Q ss_pred CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC---CcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceee
Q 007945 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG---REQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCG 185 (584)
Q Consensus 110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~---~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~ 185 (584)
.+||+|||| ++|+++|+.|+++|++|+||||++.+. ..+...+++..++.|.++|++++.. .. ........+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~~l~--~~-~~~~~~~~~~ 78 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDERMD--RE-GLVHEGTEIA 78 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChHHHH--hc-CceecceEEe
Confidence 489999996 569999999999999999999998532 2233458888999999999985421 10 0011111111
Q ss_pred ecCC-Cccccccc---cc-ceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEE-eCCeEEEEEc-CCc--EEEccEEEEe
Q 007945 186 FEGK-GEIWVEDI---LN-LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICT-YENAAVLLLA-EGK--ILSSHLIIDA 256 (584)
Q Consensus 186 f~~~-~~l~~~~~---l~-~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~-~~~gv~V~~~-~G~--~i~ArlVIdA 256 (584)
..+. ..+..+.. .. ....+..+.+.|.+++.+.|+.++.+++++.+.. +++.+.|++. +|+ +++||+||+|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~~~V~~~~~g~~~~i~adlvIGA 158 (390)
T TIGR02360 79 FDGQRFRIDLKALTGGKTVMVYGQTEVTRDLMEAREAAGLTTVYDADDVRLHDLAGDRPYVTFERDGERHRLDCDFIAGC 158 (390)
T ss_pred eCCEEEEEeccccCCCceEEEeCHHHHHHHHHHHHHhcCCeEEEeeeeEEEEecCCCccEEEEEECCeEEEEEeCEEEEC
Confidence 1000 00000000 01 1134567888899988888999999988877754 5566777775 665 7999999999
Q ss_pred cCCChHHHhHhcCCCC--CCceee--EEEEeeeccCCCcceeEEccCCcccccCCCCceEEEEEccCCCCCCccEEEEEE
Q 007945 257 MGNFSPVVKQIRSGRK--PDGVCL--VVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFT 332 (584)
Q Consensus 257 DG~~S~v~rql~~~~~--~~~~~~--~vg~~a~g~~~~~~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~L~~ 332 (584)
||.+|.+|+++..... +.+... ..+.... .+ .....+++. +.+..+.+ +|..++. ...+.+.
T Consensus 159 DG~~S~VR~~l~~~~~~~~~~~~~~~~~~l~~~-~~-~~~~~~~~~--------~~~~~~~~--~~~~~~~--~~~~~~~ 224 (390)
T TIGR02360 159 DGFHGVSRASIPAEVLKEFERVYPFGWLGILSE-TP-PVSHELIYS--------NHERGFAL--CSMRSAT--RSRYYVQ 224 (390)
T ss_pred CCCchhhHHhcCcccceeeeccCCcceEEEecC-CC-CCCCceEEE--------eCCCceEE--EeccCCC--cceEEEE
Confidence 9999999999753221 111000 0000000 00 000001100 00123332 2332211 1112112
Q ss_pred ccCCCC-CCccHHHHHHHHHhhCc-ccccccCCceeEEEEEeeeeccccCCCCCccCCCEEEeCCCCCCcCCCCCCchhh
Q 007945 333 YIDPQA-GSPKLEELLERYWDLMP-EYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGS 410 (584)
Q Consensus 333 ~~~~~~-~~~~l~~l~~~~~~~lp-~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLvGDAA~~v~PltGgG~g~ 410 (584)
+..... .........+.+.+.++ ...........+ .....|.......++..+|++|+|||||.++|..|||+|+
T Consensus 225 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~grvvLvGDAAH~~~P~~GQG~n~ 301 (390)
T TIGR02360 225 VPLTDKVEDWSDDRFWAELKRRLPSEAAERLVTGPSI---EKSIAPLRSFVCEPMQYGRLFLAGDAAHIVPPTGAKGLNL 301 (390)
T ss_pred cCCCCChhhCChhHHHHHHHHhcCchhhhhhccCCcc---ceeeeeHHhhccccCccCCEEEEEccccCCCCCcCCchhH
Confidence 211110 00011111122212221 111110000000 0122344222334567899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHh
Q 007945 411 LTRHLGRLSTGVYEAVR 427 (584)
Q Consensus 411 ~lr~~~~La~~i~~AL~ 427 (584)
+++|+..|++.|..+..
T Consensus 302 aieDA~~La~~L~~~~~ 318 (390)
T TIGR02360 302 AASDVHYLYEALLEHYQ 318 (390)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999999877654
No 46
>PRK07588 hypothetical protein; Provisional
Probab=99.93 E-value=8.3e-24 Score=227.18 Aligned_cols=311 Identities=14% Similarity=0.096 Sum_probs=176.5
Q ss_pred cEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCC-cccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecC-
Q 007945 112 DVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG- 188 (584)
Q Consensus 112 DVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~-~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~- 188 (584)
||+|||| ++|+++|..|+++|++|+|+||.+.... ...+.++...++.|.++|++++.. . ..+....+.+..
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~--~---~~~~~~~~~~~~~ 76 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLR--E---AGYQIEHVRSVDP 76 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHH--h---ccCCccceEEEcC
Confidence 8999996 5699999999999999999999976432 234667778889999999875321 1 111111111111
Q ss_pred -CCc---cc---ccccc---cceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecC
Q 007945 189 -KGE---IW---VEDIL---NLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMG 258 (584)
Q Consensus 189 -~~~---l~---~~~~l---~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG 258 (584)
+.. +. ..... .+.+.+..|.+.|.+++. .|++++.+++|++++.++++++|++++|++++|++||+|||
T Consensus 77 ~g~~~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~~-~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG 155 (391)
T PRK07588 77 TGRRKADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAID-GQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADG 155 (391)
T ss_pred CCCEEEEecHHHccccCCCceEEEEHHHHHHHHHHhhh-cCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCC
Confidence 000 00 00011 135888899999887654 47899999999999998889999999999999999999999
Q ss_pred CChHHHhHhcCCCCC-Cc-eeeEEEEe-eeccC-CCcceeEEccCCcccccCCCCceEEEEEccCCCCCCccEEEEEEcc
Q 007945 259 NFSPVVKQIRSGRKP-DG-VCLVVGSC-ARGFK-DNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYI 334 (584)
Q Consensus 259 ~~S~v~rql~~~~~~-~~-~~~~vg~~-a~g~~-~~~~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~L~~~~ 334 (584)
.+|.+|+++...... .. ....+..+ ...+. .....-..+. . ...++- .+|..++ ...+++...
T Consensus 156 ~~S~vR~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~----~-----~g~~~~-~~p~~~~---~~~~~~~~~ 222 (391)
T PRK07588 156 LHSHVRRLVFGPERDFEHYLGCKVAACVVDGYRPRDERTYVLYN----E-----VGRQVA-RVALRGD---RTLFLFIFR 222 (391)
T ss_pred CCccchhhccCCccceEEEcCcEEEEEEcCCCCCCCCceEEEEe----C-----CCCEEE-EEecCCC---CeEEEEEEE
Confidence 999999976322211 11 00011000 01111 0000000000 0 112332 4676544 222333222
Q ss_pred CCCC--C--CccHHHHHHHHHhhC-cccccccCCceeEEEEEeeeeccccCCCCCccCCCEEEeCCCCCCcCCCCCCchh
Q 007945 335 DPQA--G--SPKLEELLERYWDLM-PEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFG 409 (584)
Q Consensus 335 ~~~~--~--~~~l~~l~~~~~~~l-p~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLvGDAA~~v~PltGgG~g 409 (584)
.... . .+...+.+.+.+... +..... ++.+.-.... .+.+.......++..+|++|+|||||.++|+.|||+|
T Consensus 223 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~w~~grv~LiGDAAH~~~P~~GqG~n 300 (391)
T PRK07588 223 AEHDNPPLTPAEEKQLLRDQFGDVGWETPDI-LAALDDVEDL-YFDVVSQIRMDRWSRGRVALVGDAAACPSLLGGEGSG 300 (391)
T ss_pred cCCccccCCHHHHHHHHHHHhccCCccHHHH-HHhhhcccch-heeeeeeeccCccccCCEEEEEccccCCCCccCCcHH
Confidence 1111 1 112333333333211 111111 0011000000 0111110112245679999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCChhhhHhhhchhhhhhHH
Q 007945 410 SLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLSAS 449 (584)
Q Consensus 410 ~~lr~~~~La~~i~~AL~~~~ls~~~l~~L~~Ye~~~~~~ 449 (584)
++++|+..|++.|..+. +. . -..|+.|+...+..
T Consensus 301 ~aieDa~~La~~L~~~~--~~-~---~~al~~Y~~~R~~~ 334 (391)
T PRK07588 301 LAITEAYVLAGELARAG--GD-H---RRAFDAYEKRLRPF 334 (391)
T ss_pred HHHHHHHHHHHHHHhcc--CC-H---HHHHHHHHHHHHHH
Confidence 99999999998886432 11 1 12367888754443
No 47
>PRK06753 hypothetical protein; Provisional
Probab=99.93 E-value=5e-24 Score=227.10 Aligned_cols=304 Identities=19% Similarity=0.185 Sum_probs=178.2
Q ss_pred cEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCc-ccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecC-
Q 007945 112 DVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGRE-QEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG- 188 (584)
Q Consensus 112 DVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~-r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~- 188 (584)
||+|||| ++|+++|..|+++|++|+|+||++.+... ....+++..++.|..+|+++.. .. .......+.+..
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~--~~---~~~~~~~~~~~~~ 76 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGI--KN---AGQILSTMNLLDD 76 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHH--Hh---cCCcccceeEEcC
Confidence 8999996 57999999999999999999999875432 3456889999999999986431 11 000001111111
Q ss_pred -CCc---ccc-cccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChHH
Q 007945 189 -KGE---IWV-EDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV 263 (584)
Q Consensus 189 -~~~---l~~-~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~v 263 (584)
+.. +.. .....+.+++..|.+.|.+.+. ..+++.++++++++.++++++|++.+|+++++++||+|||.+|.+
T Consensus 77 ~g~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~~S~v 154 (373)
T PRK06753 77 KGTLLNKVKLKSNTLNVTLHRQTLIDIIKSYVK--EDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIHSKV 154 (373)
T ss_pred CCCEEeecccccCCccccccHHHHHHHHHHhCC--CceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEECCCcchHH
Confidence 100 000 0122356899999999988874 358999999999998888899999889999999999999999999
Q ss_pred HhHhcCCCCCC--ceeeEEEEee-eccCCCcceeEEccCCcccccCCCCceEEEEEccCCCCCCccEEEEEEccC---CC
Q 007945 264 VKQIRSGRKPD--GVCLVVGSCA-RGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYID---PQ 337 (584)
Q Consensus 264 ~rql~~~~~~~--~~~~~vg~~a-~g~~~~~~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~L~~~~~---~~ 337 (584)
|++++...+.. +.....+... ...+.......++. ..+++| .+|..++ ..+++.... ..
T Consensus 155 R~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~----------~~g~~~-~~p~~~~----~~~~~~~~~~~~~~ 219 (373)
T PRK06753 155 RQSVNADSKVRYQGYTCFRGLIDDIDLKLPDCAKEYWG----------TKGRFG-IVPLLNN----QAYWFITINAKERD 219 (373)
T ss_pred HHHhCCCCCceEcceEEEEEEeccccccCccceEEEEc----------CCCEEE-EEEcCCC----eEEEEEEeccccCC
Confidence 99986433211 1110111110 01000000001110 134566 5787654 122222211 11
Q ss_pred CCC-ccHHHHHHHHHhhC-cccccccCCceeEEEEEeeeeccccCCC-CCccCCCEEEeCCCCCCcCCCCCCchhhHHHH
Q 007945 338 AGS-PKLEELLERYWDLM-PEYQGVTLDNLEIQRVIYGIFPTYRDSP-LPAAFNRILQFGDASGIQSPVSFGGFGSLTRH 414 (584)
Q Consensus 338 ~~~-~~l~~l~~~~~~~l-p~~~~~~l~~~~~~~~~~g~~P~~~~~~-~~~~~~rvlLvGDAA~~v~PltGgG~g~~lr~ 414 (584)
+.. ..-.+.+.++++.. +.++.. ++.... .... ..+.+...+ .++..+|++|+|||||.++|.+|+|++++++|
T Consensus 220 ~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~-~~~~-~~~~~~~~~~~~~~~~rv~LiGDAAh~~~P~~GqG~n~ai~D 296 (373)
T PRK06753 220 PKYSSFGKPHLQAYFNHYPNEVREI-LDKQSE-TGIL-HHDIYDLKPLKSFVYGRIVLLGDAAHATTPNMGQGAGQAMED 296 (373)
T ss_pred cccccccHHHHHHHHhcCChHHHHH-HHhCCc-ccce-eeccccccccccccCCCEEEEecccccCCCCcCccHHHHHHH
Confidence 110 11112223333322 111111 111100 0000 112222122 24567999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCChhhhHhhhchhhhhhH
Q 007945 415 LGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLSA 448 (584)
Q Consensus 415 ~~~La~~i~~AL~~~~ls~~~l~~L~~Ye~~~~~ 448 (584)
+..|++.|.. .+ . -+.++.|+...+.
T Consensus 297 a~~L~~~L~~----~~--~--~~al~~Y~~~r~~ 322 (373)
T PRK06753 297 AIVLANCLNA----YD--F--EKALQRYDKIRVK 322 (373)
T ss_pred HHHHHHHhhh----cc--H--HHHHHHHHHHhhH
Confidence 9999877742 11 1 1236678775443
No 48
>PRK07538 hypothetical protein; Provisional
Probab=99.93 E-value=1.7e-23 Score=226.67 Aligned_cols=310 Identities=17% Similarity=0.211 Sum_probs=176.8
Q ss_pred cEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCc-ccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecC-
Q 007945 112 DVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGRE-QEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG- 188 (584)
Q Consensus 112 DVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~-r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~- 188 (584)
||+|||| ++|+++|+.|+++|++|+|+||++..+.. ...++++..++.|.++|+++.. .. .......+.|..
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~lgl~~~l--~~---~~~~~~~~~~~~~ 76 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDAL--DA---IGIRTRELAYFNR 76 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHCCCHHHH--Hh---hCCCCcceEEEcC
Confidence 8999996 56999999999999999999999865532 2345778889999999987542 11 111001111110
Q ss_pred -CCcccc-------cc-cccceeCHHHHHHHHHHHHHhC-CC-EEEeCceEEEEEEeCCeEEEEEcCC-----cEEEccE
Q 007945 189 -KGEIWV-------ED-ILNLGVSPAKLIEIVKKRFISL-GG-VIFEGYSVSSICTYENAAVLLLAEG-----KILSSHL 252 (584)
Q Consensus 189 -~~~l~~-------~~-~l~~~vd~~~L~~~L~~~a~~~-G~-~i~~~t~v~~v~~~~~gv~V~~~~G-----~~i~Arl 252 (584)
+..++. .. ...+.+++..|++.|.+++.+. |. .++.+++|+++..+++++++.+.++ ++++||+
T Consensus 77 ~g~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~adl 156 (413)
T PRK07538 77 HGQRIWSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTVVFLGDRAGGDLVSVRGDV 156 (413)
T ss_pred CCCEEeeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEeccCCCccceEEeeE
Confidence 111110 00 0123589999999999998764 75 6999999999988888777776542 4899999
Q ss_pred EEEecCCChHHHhHhcCCC-C--CCceeeEEEEee-eccCCCcceeEEccCCcccccCCCCceEEEEEccCCCC--CC--
Q 007945 253 IIDAMGNFSPVVKQIRSGR-K--PDGVCLVVGSCA-RGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSG--PL-- 324 (584)
Q Consensus 253 VIdADG~~S~v~rql~~~~-~--~~~~~~~vg~~a-~g~~~~~~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g--~~-- 324 (584)
||+|||.+|.+|+++.... + +.+.....+.+. ..+... ..+... +. ..+.+. .||..++ +.
T Consensus 157 vIgADG~~S~vR~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~-------g~-~~~~~~-~~p~~~~~~~~g~ 225 (413)
T PRK07538 157 LIGADGIHSAVRAQLYPDEGPPRWNGVMMWRGVTEAPPFLTG--RSMVMA-------GH-LDGKLV-VYPISEPVDADGR 225 (413)
T ss_pred EEECCCCCHHHhhhhcCCCCCCcccceEEEEEeecCccccCC--CcEEEE-------cC-CCCEEE-EEECCCCcccCCc
Confidence 9999999999999885332 1 111111111110 000000 000000 00 011222 3554321 00
Q ss_pred ccEEEEEEccCC---CC-----CC-ccHHHHHHHHHhhCcc---cccccCCceeEEEEEeeeeccccCCCC-CccCCCEE
Q 007945 325 DRTTYMFTYIDP---QA-----GS-PKLEELLERYWDLMPE---YQGVTLDNLEIQRVIYGIFPTYRDSPL-PAAFNRIL 391 (584)
Q Consensus 325 ~~~~~L~~~~~~---~~-----~~-~~l~~l~~~~~~~lp~---~~~~~l~~~~~~~~~~g~~P~~~~~~~-~~~~~rvl 391 (584)
....+.+..... .. .. ...+++++.|-...+. .... +... .. .-.+|++...+. ++..+|++
T Consensus 226 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~---~~-~~~~p~~~~~~~~~w~~grv~ 300 (413)
T PRK07538 226 QLINWVAEVRVDDAGAPRREDWNRPGDLEDFLPHFADWRFDWLDVPAL-IRAA---EA-IYEYPMVDRDPLPRWTRGRVT 300 (413)
T ss_pred eEEEEEEEEcCCccCCCcccccCCccCHHHHHHHhcCCCCCcccHHHH-HhcC---cc-eeeccccccCCCCcccCCcEE
Confidence 011122111111 00 01 1344444332211111 1110 0100 01 112466543333 56779999
Q ss_pred EeCCCCCCcCCCCCCchhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhchhhhhhHH
Q 007945 392 QFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLSAS 449 (584)
Q Consensus 392 LvGDAA~~v~PltGgG~g~~lr~~~~La~~i~~AL~~~~ls~~~l~~L~~Ye~~~~~~ 449 (584)
|+|||||.++|++|+|.+.+++|+..|++.|.+. ++ .-+.|+.|+...+..
T Consensus 301 LvGDAAH~~~P~~GqG~~~Ai~Da~~La~~L~~~---~~----~~~aL~~Ye~~R~~~ 351 (413)
T PRK07538 301 LLGDAAHPMYPVGSNGASQAILDARALADALAAH---GD----PEAALAAYEAERRPA 351 (413)
T ss_pred EEeeccCcCCCCCcccHHHHHHHHHHHHHHHHhc---CC----HHHHHHHHHHHhhHH
Confidence 9999999999999999999999999999888653 21 123377888865443
No 49
>PRK06475 salicylate hydroxylase; Provisional
Probab=99.92 E-value=1.4e-23 Score=226.24 Aligned_cols=298 Identities=14% Similarity=0.131 Sum_probs=172.7
Q ss_pred ccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCC-cccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecC
Q 007945 111 FDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG 188 (584)
Q Consensus 111 yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~-~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~ 188 (584)
-+|+|||| ++|+++|..|+++|++|.|+||.+.... .+...+++..++.|..+|++++.. . ..+.+..+.+.+
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~~l~--~---~~~~~~~~~~~~ 77 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLS--G---TGVTPKALYLMD 77 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChHHHh--h---cccCcceEEEec
Confidence 47999996 4699999999999999999999875432 244678899999999999875421 1 111111111111
Q ss_pred CCc-----------cccc--ccccceeCHHHHHHHHHHHHHhC-CCEEEeCceEEEEEEeCCeEEEEEc---CCcEEEcc
Q 007945 189 KGE-----------IWVE--DILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLA---EGKILSSH 251 (584)
Q Consensus 189 ~~~-----------l~~~--~~l~~~vd~~~L~~~L~~~a~~~-G~~i~~~t~v~~v~~~~~gv~V~~~---~G~~i~Ar 251 (584)
+.. .... ....+.+.+..|.+.|.+++.+. |++++.+++++++..++++++|++. ++++++||
T Consensus 78 g~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~v~v~~~~~~~~~~~~ad 157 (400)
T PRK06475 78 GRKARPLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNSITATIIRTNSVETVSAA 157 (400)
T ss_pred CCCcceEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCCCceEEEEEeCCCCcEEecC
Confidence 000 0000 00113578999999999999775 7899999999999888888888763 34689999
Q ss_pred EEEEecCCChHHHhHhcCCC-CCCceeeEEEEee-eccCCCcceeEEccCCcccccCCCCceEEEEEccCCCCCCccEEE
Q 007945 252 LIIDAMGNFSPVVKQIRSGR-KPDGVCLVVGSCA-RGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTY 329 (584)
Q Consensus 252 lVIdADG~~S~v~rql~~~~-~~~~~~~~vg~~a-~g~~~~~~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~ 329 (584)
+||+|||.+|.+|++++... .+.+.....+.+. ..++. .....+..........+.+.. +. .+|..++. ...+
T Consensus 158 lvIgADG~~S~vR~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~-~~-~~p~~~~~--~~~~ 232 (400)
T PRK06475 158 YLIACDGVWSMLRAKAGFSKARFSGHIAWRTTLAADALPA-SFLSAMPEHKAVSAWLGNKAH-FI-AYPVKGGK--FFNF 232 (400)
T ss_pred EEEECCCccHhHHhhcCCCCCCcCCceEEEEEeehhhcch-hhhhhcccCCceEEEEcCCCE-EE-EEEccCCc--EEEE
Confidence 99999999999999985421 1222221111111 11110 000000000000000011222 22 47776542 2223
Q ss_pred EEEccCCC-C---CCccHHHHHHHHHhhC-cccccccCCceeEEEEEeeeeccccCCCCCc-cCCCEEEeCCCCCCcCCC
Q 007945 330 MFTYIDPQ-A---GSPKLEELLERYWDLM-PEYQGVTLDNLEIQRVIYGIFPTYRDSPLPA-AFNRILQFGDASGIQSPV 403 (584)
Q Consensus 330 L~~~~~~~-~---~~~~l~~l~~~~~~~l-p~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~-~~~rvlLvGDAA~~v~Pl 403 (584)
+....+.. . ..+.-.+.+.+++... |.+... ++... . ...+|++...+.++ ..+|++|+|||||.++|.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-i~~~~---~-~~~~~l~~~~~~~~~~~grvvLiGDAAH~~~P~ 307 (400)
T PRK06475 233 VAITGGENPGEVWSKTGDKAHLKSIYADWNKPVLQI-LAAID---E-WTYWPLFEMADAQFVGPDRTIFLGDASHAVTPF 307 (400)
T ss_pred EEEEcCCCCcccCCCCCCHHHHHHHhcCCChHHHHH-HhcCC---c-eeECcCcccCCCcceecCCEEEEecccccCCch
Confidence 22111111 1 1111122223333322 111211 11111 1 12456654444444 358999999999999999
Q ss_pred CCCchhhHHHHHHHHHHHHH
Q 007945 404 SFGGFGSLTRHLGRLSTGVY 423 (584)
Q Consensus 404 tGgG~g~~lr~~~~La~~i~ 423 (584)
+|||.+++++|+..|++.|.
T Consensus 308 ~GqG~n~aieDa~~La~~L~ 327 (400)
T PRK06475 308 AAQGAAMAIEDAAALAEALD 327 (400)
T ss_pred hhhhHHHHHHHHHHHHHHHh
Confidence 99999999999999998774
No 50
>PRK05868 hypothetical protein; Validated
Probab=99.92 E-value=9.7e-23 Score=217.94 Aligned_cols=309 Identities=16% Similarity=0.108 Sum_probs=172.8
Q ss_pred ccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCc-ccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecC
Q 007945 111 FDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGRE-QEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG 188 (584)
Q Consensus 111 yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~-r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~ 188 (584)
.||+|||| ++|+++|..|+++|++|+|+||++..+.. ....++...++.|.++|+++.. ... ...+....+...+
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~--~~~-~~~~~~~~~~~~~ 78 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAA--QEH-KTRIRGASFVDRD 78 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHH--Hhh-ccCccceEEEeCC
Confidence 48999996 56999999999999999999999875432 2235677788999999987532 110 1111111110000
Q ss_pred CCccc-------ccc---cccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecC
Q 007945 189 KGEIW-------VED---ILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMG 258 (584)
Q Consensus 189 ~~~l~-------~~~---~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG 258 (584)
+..+. ... ...+.+.+..|.+.|.+. ...|++++.++++++++.++++++|++++|++++|++||+|||
T Consensus 79 g~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~-~~~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvIgADG 157 (372)
T PRK05868 79 GNELFRDTESTPTGGPVNSPDIELLRDDLVELLYGA-TQPSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADG 157 (372)
T ss_pred CCEEeecccccccCCCCCCceEEEEHHHHHHHHHHh-ccCCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCEEEECCC
Confidence 00000 000 012356677888877553 3568899999999999888889999999999999999999999
Q ss_pred CChHHHhHhcCCCCC-C-cee--eEEEEeeeccCCCcceeEEccCCcccccCCCCceEEEEEccCCCCCCccEEEEEEcc
Q 007945 259 NFSPVVKQIRSGRKP-D-GVC--LVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYI 334 (584)
Q Consensus 259 ~~S~v~rql~~~~~~-~-~~~--~~vg~~a~g~~~~~~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~L~~~~ 334 (584)
.+|.+|+++...... . ... ..+..+....+.+.....+.+ ...++. .||..++. ....++.+.
T Consensus 158 ~~S~vR~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g----------~~~~~~-~~~~~~~~--~~~~~~~~~ 224 (372)
T PRK05868 158 LHSNVRRLVFGPEEQFVKRLGTHAAIFTVPNFLELDYWQTWHYG----------DSTMAG-VYSARNNT--EARAALAFM 224 (372)
T ss_pred CCchHHHHhcCCcccceeecceEEEEEEcCCCCCCCcceEEEec----------CCcEEE-EEecCCCC--ceEEEEEEe
Confidence 999999988432211 1 100 000000000000001111110 011222 45655431 111122221
Q ss_pred CCC--CC---Cc-cHHHHHHHHHhh-C--cccccccCCceeEEEEEeeeec-cccCCCCCccCCCEEEeCCCCCCcCCCC
Q 007945 335 DPQ--AG---SP-KLEELLERYWDL-M--PEYQGVTLDNLEIQRVIYGIFP-TYRDSPLPAAFNRILQFGDASGIQSPVS 404 (584)
Q Consensus 335 ~~~--~~---~~-~l~~l~~~~~~~-l--p~~~~~~l~~~~~~~~~~g~~P-~~~~~~~~~~~~rvlLvGDAA~~v~Plt 404 (584)
... .. .+ ..+++.+.|... . +.+... +.... . -+++ +......+++.+||+|+|||||.++|++
T Consensus 225 ~~~~~~~~~~~~~~~~~l~~~f~~~~w~~~~l~~~-~~~~~---~--~~~~~~~~~~~~~w~~grv~LvGDAAH~~~P~~ 298 (372)
T PRK05868 225 DTELRIDYRDTEAQFAELQRRMAEDGWVRAQLLHY-MRSAP---D--FYFDEMSQILMDRWSRGRVALVGDAGYCCSPLS 298 (372)
T ss_pred cCCcccccCChHHHHHHHHHHHhhCCCchHHHHhh-cccCC---c--eeeccceEEecCCCCCCCeeeeecccccCCCcc
Confidence 111 00 11 223333333211 1 111111 00000 0 0122 1111223567899999999999999999
Q ss_pred CCchhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhchhhhhhH
Q 007945 405 FGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLSA 448 (584)
Q Consensus 405 GgG~g~~lr~~~~La~~i~~AL~~~~ls~~~l~~L~~Ye~~~~~ 448 (584)
|||.|+++.|+..|++.|... .+++ . +.++.||..++-
T Consensus 299 GqGa~~AleDa~~La~~L~~~--~~~~-~---~al~~ye~~~~~ 336 (372)
T PRK05868 299 GQGTSVALLGAYILAGELKAA--GDDY-Q---LGFANYHAEFHG 336 (372)
T ss_pred CccHHHHHHHHHHHHHHHHhc--CCCH-H---HHHHHHHHHHhH
Confidence 999999999999999888542 1111 1 236788875433
No 51
>PRK06126 hypothetical protein; Provisional
Probab=99.92 E-value=6.4e-23 Score=229.86 Aligned_cols=297 Identities=13% Similarity=0.129 Sum_probs=170.6
Q ss_pred CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCC-cccccCCHHHHHHHHHcCCCcccccchhhhccc--------
Q 007945 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEATATKF-------- 179 (584)
Q Consensus 110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~-~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~-------- 179 (584)
.+||+|||| ++|+++|..|+++|++|+|+||++.+.. ++...++...++.|..+|++++..-.. ....+
T Consensus 7 ~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~lGl~~~l~~~g-~~~~~~~~~~~~~ 85 (545)
T PRK06126 7 ETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIADEVRSAG-LPVDYPTDIAYFT 85 (545)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhcChHHHHHhhc-CCccccCCceEEe
Confidence 689999996 5799999999999999999999975442 355678999999999999875421000 00000
Q ss_pred --CCc---eeeecCCC-cc---------cccccccceeCHHHHHHHHHHHHHhC-CCEEEeCceEEEEEEeCCeEEEEEc
Q 007945 180 --NPN---RCGFEGKG-EI---------WVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLA 243 (584)
Q Consensus 180 --~~~---~v~f~~~~-~l---------~~~~~l~~~vd~~~L~~~L~~~a~~~-G~~i~~~t~v~~v~~~~~gv~V~~~ 243 (584)
... .+.+.... .. +......+.+++..|++.|.+++.+. |++++.++++++++.+++++++++.
T Consensus 86 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~ 165 (545)
T PRK06126 86 RLTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQDADGVTATVE 165 (545)
T ss_pred cCCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEECCCeEEEEEE
Confidence 110 01111000 00 00011234578889999999999875 7899999999999988888877764
Q ss_pred ---CCc--EEEccEEEEecCCChHHHhHhcCCCCCCc-eeeEEEEeee--ccCC---CcceeEEccCCcccccCCCCceE
Q 007945 244 ---EGK--ILSSHLIIDAMGNFSPVVKQIRSGRKPDG-VCLVVGSCAR--GFKD---NSTSDVIYSSSSVKKVGDSEVQL 312 (584)
Q Consensus 244 ---~G~--~i~ArlVIdADG~~S~v~rql~~~~~~~~-~~~~vg~~a~--g~~~---~~~~di~~~~~~~~~~~~~~~~~ 312 (584)
+|+ +++|++||+|||.+|.+|++++....-.. ....+..... .... ......++... + + ..
T Consensus 166 ~~~~g~~~~i~ad~vVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---p----~-~~ 237 (545)
T PRK06126 166 DLDGGESLTIRADYLVGCDGARSAVRRSLGISYEGTSGLQRDLSIYIRAPGLAALVGHDPAWMYWLFN---P----D-RR 237 (545)
T ss_pred ECCCCcEEEEEEEEEEecCCcchHHHHhcCCccccCCCcceEEEEEEEcCchHHHhcCCCceEEEEEC---C----C-cc
Confidence 353 79999999999999999999875421111 0000000000 0000 00000000000 0 0 01
Q ss_pred EEEEccCCCCCCccEEEEEE-ccCCCC-CCccHHHHHHHHHhhCcccccccCCceeEEEEEeeeeccccCCCCCccCCCE
Q 007945 313 FWEAFPAGSGPLDRTTYMFT-YIDPQA-GSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRI 390 (584)
Q Consensus 313 ~W~~fP~~~g~~~~~~~L~~-~~~~~~-~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rv 390 (584)
.. .+|.... ..+.+. +..... ...+-++..+.+.+.++ ... ..++... ..++.......++..+||
T Consensus 238 ~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~i~~~--~~w~~~~~~a~~~~~gRv 305 (545)
T PRK06126 238 GV-LVAIDGR----DEWLFHQLRGGEDEFTIDDVDARAFVRRGVG--EDI---DYEVLSV--VPWTGRRLVADSYRRGRV 305 (545)
T ss_pred EE-EEEECCC----CeEEEEEecCCCCCCCCCHHHHHHHHHHhcC--CCC---CeEEEee--cccchhheehhhhccCCE
Confidence 11 1222211 122222 211111 11121222222222221 011 1222211 112222223346678999
Q ss_pred EEeCCCCCCcCCCCCCchhhHHHHHHHHHHHHHHHHh
Q 007945 391 LQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVR 427 (584)
Q Consensus 391 lLvGDAA~~v~PltGgG~g~~lr~~~~La~~i~~AL~ 427 (584)
+|+|||||.++|+.|||+|+++.|+..|++.|+..++
T Consensus 306 ~L~GDAAH~~~P~~GqG~N~gieDa~~La~~La~~~~ 342 (545)
T PRK06126 306 FLAGDAAHLFTPTGGYGMNTGIGDAVNLAWKLAAVLN 342 (545)
T ss_pred EEechhhccCCCCcCcccchhHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999988774
No 52
>PRK08163 salicylate hydroxylase; Provisional
Probab=99.92 E-value=4e-23 Score=221.93 Aligned_cols=295 Identities=14% Similarity=0.138 Sum_probs=176.1
Q ss_pred CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCc-ccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeec
Q 007945 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGRE-QEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE 187 (584)
Q Consensus 110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~-r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~ 187 (584)
..||+|||| ++|+++|..|+++|++|+|+||.+.++.. +...+++..++.|..+|+++... . ..+....+.+.
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~--~---~~~~~~~~~~~ 78 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAAR--Q---RAVFTDHLTMM 78 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHcCChHHHH--h---hccCCcceEEE
Confidence 579999996 56999999999999999999999865532 23457888999999999875421 1 11101111111
Q ss_pred C---CCc---cccc----ccc---cceeCHHHHHHHHHHHHHhCC-CEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEE
Q 007945 188 G---KGE---IWVE----DIL---NLGVSPAKLIEIVKKRFISLG-GVIFEGYSVSSICTYENAAVLLLAEGKILSSHLI 253 (584)
Q Consensus 188 ~---~~~---l~~~----~~l---~~~vd~~~L~~~L~~~a~~~G-~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlV 253 (584)
+ +.. +... ..+ ...+++..|.+.|.+++.+.+ ++++.+++++++..++++++|++.+|++++|++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~v 158 (396)
T PRK08163 79 DAVDAEEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGNRWTGDAL 158 (396)
T ss_pred eCCCCCEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEcCCCEEecCEE
Confidence 0 000 0000 001 135789999999999998775 7999999999998888889898888889999999
Q ss_pred EEecCCChHHHhHhcCC-CCCCceeeEEEEee-eccCCCcceeEEccCCcccccCCCCceEEEEEccCCCCCCccEEEEE
Q 007945 254 IDAMGNFSPVVKQIRSG-RKPDGVCLVVGSCA-RGFKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMF 331 (584)
Q Consensus 254 IdADG~~S~v~rql~~~-~~~~~~~~~vg~~a-~g~~~~~~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~L~ 331 (584)
|+|||.+|.+++++... ..+.+.....+... ..++. ... . ....... + ..+++| .||..++. ...+++
T Consensus 159 V~AdG~~S~~r~~~~g~~~~~~g~~~~~~~~~~~~~~~-~~~---~-~~~~~~~-g-~~~~~~-~~p~~~g~--~~~~~~ 228 (396)
T PRK08163 159 IGCDGVKSVVRQSLVGDAPRVTGHVVYRAVIDVDDMPE-DLR---I-NAPVLWA-G-PHCHLV-HYPLRGGE--QYNLVV 228 (396)
T ss_pred EECCCcChHHHhhccCCCCCccccEEEEEEEeHHHCcc-hhc---c-CccEEEE-c-CCceEE-EEEecCCe--EEEEEE
Confidence 99999999999887322 12222211111110 01110 000 0 0000000 1 134555 57876541 122222
Q ss_pred EccCCCC-----CCccHHHHHHHHHhhCcccccccCCceeEEEEEeeeeccccCCCC-CccCCCEEEeCCCCCCcCCCCC
Q 007945 332 TYIDPQA-----GSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPL-PAAFNRILQFGDASGIQSPVSF 405 (584)
Q Consensus 332 ~~~~~~~-----~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~~-~~~~~rvlLvGDAA~~v~PltG 405 (584)
.+..... ...+.+++.+.|-...|..... ++... .+..++.+...+. ++..+|++|+|||||.++|++|
T Consensus 229 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~grv~LiGDAAH~~~P~~G 303 (396)
T PRK08163 229 TFHSREQEEWGVKDGSKEEVLSYFEGIHPRPRQM-LDKPT----SWKRWATADREPVAKWSTGRVTLLGDAAHPMTQYMA 303 (396)
T ss_pred EECCCCCcccccCCCCHHHHHHHHcCCChHHHHH-HhcCC----ceeEccccCCCcccccccCcEEEEecccccCCcchh
Confidence 2211110 1113344444333334433322 11111 0111222222222 4567999999999999999999
Q ss_pred CchhhHHHHHHHHHHHHHH
Q 007945 406 GGFGSLTRHLGRLSTGVYE 424 (584)
Q Consensus 406 gG~g~~lr~~~~La~~i~~ 424 (584)
+|.+++++|+..|++.|..
T Consensus 304 qG~n~ai~Da~~La~~L~~ 322 (396)
T PRK08163 304 QGACMALEDAVTLGKALEG 322 (396)
T ss_pred ccHHHHHHHHHHHHHHHHh
Confidence 9999999999999987754
No 53
>PRK06847 hypothetical protein; Provisional
Probab=99.92 E-value=1.1e-22 Score=216.75 Aligned_cols=291 Identities=18% Similarity=0.159 Sum_probs=172.5
Q ss_pred CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCc-ccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeec
Q 007945 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGRE-QEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE 187 (584)
Q Consensus 110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~-r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~ 187 (584)
..||+|||| ++|+++|..|+++|++|+|+||++.+... ....+++..++.|..+|+++.. ....+....+.+.
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~-----~~~~~~~~~~~~~ 78 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDEC-----LEAGFGFDGVDLF 78 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHH-----HHhCCCccceEEE
Confidence 579999996 57999999999999999999998765422 1234778888999999976431 1111111111111
Q ss_pred C--CC--------ccccc-ccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEe
Q 007945 188 G--KG--------EIWVE-DILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDA 256 (584)
Q Consensus 188 ~--~~--------~l~~~-~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdA 256 (584)
. +. ....+ ......+++..|.+.|.+.+.+.|++++.++++++++.++++++|.+.+|+++.|++||+|
T Consensus 79 ~~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~A 158 (375)
T PRK06847 79 DPDGTLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGA 158 (375)
T ss_pred CCCCCEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEEC
Confidence 0 00 00000 0112457889999999999988899999999999998888888898888999999999999
Q ss_pred cCCChHHHhHhc-CCCCC--CceeeEEEEeeeccCCC-cceeEEccCCcccccCCCCceEEEEEccCCCCCCccEEEEEE
Q 007945 257 MGNFSPVVKQIR-SGRKP--DGVCLVVGSCARGFKDN-STSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFT 332 (584)
Q Consensus 257 DG~~S~v~rql~-~~~~~--~~~~~~vg~~a~g~~~~-~~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~L~~ 332 (584)
||.+|.+++++. ....+ .+.....+ .++.. .........+ ....+. .+|..++ ..+.+.
T Consensus 159 dG~~s~~r~~l~~~~~~~~~~g~~~~~~----~~~~~~~~~~~~~~~~--------~~~~~~-~~p~~~~----~~~~~~ 221 (375)
T PRK06847 159 DGLYSKVRSLVFPDEPEPEYTGQGVWRA----VLPRPAEVDRSLMYLG--------PTTKAG-VVPLSED----LMYLFV 221 (375)
T ss_pred cCCCcchhhHhcCCCCCceeccceEEEE----EecCCCCccceEEEeC--------CCcEEE-EEcCCCC----eEEEEE
Confidence 999999999873 21111 11110000 11100 0000000000 112232 3566543 223332
Q ss_pred ccCCCC-C---CccHHHHHHHHHhhCcc--cccccCCceeEEEEEeeeeccccC-CCCCccCCCEEEeCCCCCCcCCCCC
Q 007945 333 YIDPQA-G---SPKLEELLERYWDLMPE--YQGVTLDNLEIQRVIYGIFPTYRD-SPLPAAFNRILQFGDASGIQSPVSF 405 (584)
Q Consensus 333 ~~~~~~-~---~~~l~~l~~~~~~~lp~--~~~~~l~~~~~~~~~~g~~P~~~~-~~~~~~~~rvlLvGDAA~~v~PltG 405 (584)
...... . ...+.+.+++.+...+. ..... +.+.-... ....|.+.. .+.++..+|++|+|||||.++|.+|
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~grv~LiGDAaH~~~P~~G 299 (375)
T PRK06847 222 TEPRPDNPRIEPDTLAALLRELLAPFGGPVLQELR-EQITDDAQ-VVYRPLETLLVPAPWHRGRVVLIGDAAHATTPHLA 299 (375)
T ss_pred eccCcccccCChHHHHHHHHHHHhhcCchHHHHHH-HhcCCccc-eeeccHhhccCCCCccCCeEEEEechhccCCCCcc
Confidence 221110 0 11333444444333221 11110 11100011 112344322 1235678999999999999999999
Q ss_pred CchhhHHHHHHHHHHHHHH
Q 007945 406 GGFGSLTRHLGRLSTGVYE 424 (584)
Q Consensus 406 gG~g~~lr~~~~La~~i~~ 424 (584)
+|.+.+++|+..|++.|..
T Consensus 300 qG~n~aieDA~~La~~L~~ 318 (375)
T PRK06847 300 QGAGMAIEDAIVLAEELAR 318 (375)
T ss_pred ccHHHHHHHHHHHHHHHhh
Confidence 9999999999999988754
No 54
>PRK07236 hypothetical protein; Provisional
Probab=99.90 E-value=5.8e-22 Score=212.71 Aligned_cols=153 Identities=19% Similarity=0.177 Sum_probs=106.9
Q ss_pred CccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCccc--ccCCHHHHHHHHHcCCCcccccchhhhcccCCceeee
Q 007945 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQE--WNISRKELLELVESGILVEDDIDEATATKFNPNRCGF 186 (584)
Q Consensus 110 ~yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~--w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f 186 (584)
.+||+||||| +|+++|..|+++|++|+|+||++.+...+. ..+++..++.|..+|+....+. ........+..
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~----~~~~~~~~~~~ 81 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADI----GVPSRERIYLD 81 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCccccc----ccCccceEEEe
Confidence 5899999965 699999999999999999999875433333 2468888999999998653211 11111110100
Q ss_pred cCCCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChHHHhH
Q 007945 187 EGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQ 266 (584)
Q Consensus 187 ~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~v~rq 266 (584)
..+..+.........+.+..+.+.|.+.+ .+.+++.+++|++++.++++++|++.+|++++|++||+|||.+|.+|++
T Consensus 82 ~~g~~~~~~~~~~~~~~~~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vIgADG~~S~vR~~ 159 (386)
T PRK07236 82 RDGRVVQRRPMPQTQTSWNVLYRALRAAF--PAERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADGGRSTVRAQ 159 (386)
T ss_pred CCCCEeeccCCCccccCHHHHHHHHHHhC--CCcEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCchHHHH
Confidence 11111110000011245666777776654 2457999999999999888999999999999999999999999999998
Q ss_pred hc
Q 007945 267 IR 268 (584)
Q Consensus 267 l~ 268 (584)
+.
T Consensus 160 l~ 161 (386)
T PRK07236 160 LL 161 (386)
T ss_pred hC
Confidence 74
No 55
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=99.88 E-value=3e-20 Score=209.29 Aligned_cols=318 Identities=19% Similarity=0.180 Sum_probs=175.3
Q ss_pred CCccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCC-CCc----ccccCCHHHHHHHHHcCCCcccccchh--hh-cc-
Q 007945 109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLK-GRE----QEWNISRKELLELVESGILVEDDIDEA--TA-TK- 178 (584)
Q Consensus 109 ~~yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~-~~~----r~w~Is~~~l~~L~~lGl~~~~ele~~--i~-~~- 178 (584)
..++|+||||| +|+++|..|+++|++|.|+||.+.. +.. +...|++..++.|..+|++..+++... +. ..
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~~~~r~~G~~~~~I~L~pngl~aLe~LGl~~~e~l~~~g~~~~~~i 159 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDLSAIRGEGKYRGPIQIQSNALAALEAIDIDVAEQVMEAGCITGDRI 159 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccccccccccccCcccccCHHHHHHHHHcCcchHHHHHhhcCccccee
Confidence 35899999965 6999999999999999999998632 111 235688899999999996433222111 00 00
Q ss_pred --c-C---Cce-eeecCCCcc-cccccccceeCHHHHHHHHHHHHHhCCC-EEEeCceEEEEEEeCCeEEEEEcCCcEEE
Q 007945 179 --F-N---PNR-CGFEGKGEI-WVEDILNLGVSPAKLIEIVKKRFISLGG-VIFEGYSVSSICTYENAAVLLLAEGKILS 249 (584)
Q Consensus 179 --~-~---~~~-v~f~~~~~l-~~~~~l~~~vd~~~L~~~L~~~a~~~G~-~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ 249 (584)
+ + ..+ +.+...... .......+.|++..|++.|.+.+ +. .++.+++|+++..++++++|++.+|++++
T Consensus 160 ~~~~d~~~G~~~~~~~~~~~~~~~g~p~~~~I~R~~L~~~L~~al---g~~~i~~g~~V~~I~~~~d~VtV~~~dG~ti~ 236 (668)
T PLN02927 160 NGLVDGISGSWYVKFDTFTPAASRGLPVTRVISRMTLQQILARAV---GEDVIRNESNVVDFEDSGDKVTVVLENGQRYE 236 (668)
T ss_pred eeeeecCCCceEeeccccccccccCCCeEEEEeHHHHHHHHHhhC---CCCEEEcCCEEEEEEEeCCEEEEEECCCCEEE
Confidence 0 0 000 111110000 00011234689999999997654 33 46788999999988999999998999999
Q ss_pred ccEEEEecCCChHHHhHhcCCCC--CCceeeEEEEeeeccC-C-CcceeEEccCCcccccCCCCceEEEEEccCCCCCCc
Q 007945 250 SHLIIDAMGNFSPVVKQIRSGRK--PDGVCLVVGSCARGFK-D-NSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLD 325 (584)
Q Consensus 250 ArlVIdADG~~S~v~rql~~~~~--~~~~~~~vg~~a~g~~-~-~~~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~ 325 (584)
|++||+|||.+|.+|+++....+ +.+.+...+.+ ...+ + .......+ .+ ..+++- .+|.+++.
T Consensus 237 aDlVVGADG~~S~vR~~l~g~~~~~~sG~~~~rgi~-~~~p~~~~~~~~~~~--------~G-~~~~~v-~~~v~~g~-- 303 (668)
T PLN02927 237 GDLLVGADGIWSKVRNNLFGRSEATYSGYTCYTGIA-DFIPADIESVGYRVF--------LG-HKQYFV-SSDVGGGK-- 303 (668)
T ss_pred cCEEEECCCCCcHHHHHhcCCCCCcccceEEEEEEc-CCCcccccccceEEE--------Ec-CCeEEE-EEcCCCCe--
Confidence 99999999999999998743222 12211111111 0000 0 00000000 00 122222 23443331
Q ss_pred cEEEEEEccCC-C-CCCccHHHHHHHHHh-hCcccccccCCceeEEEEEeeeeccccCCC-CCccCCCEEEeCCCCCCcC
Q 007945 326 RTTYMFTYIDP-Q-AGSPKLEELLERYWD-LMPEYQGVTLDNLEIQRVIYGIFPTYRDSP-LPAAFNRILQFGDASGIQS 401 (584)
Q Consensus 326 ~~~~L~~~~~~-~-~~~~~l~~l~~~~~~-~lp~~~~~~l~~~~~~~~~~g~~P~~~~~~-~~~~~~rvlLvGDAA~~v~ 401 (584)
...|.|...+. . ......++.+.+.++ ..|.++.. +...... .....+++...+ .++..+||+|+|||||.++
T Consensus 304 ~~~~~f~~~p~~~~~~~~~~~e~L~~~f~~w~~~v~el-I~~t~~~--~i~~~~iyd~~p~~~W~~grVvLiGDAAH~~~ 380 (668)
T PLN02927 304 MQWYAFHEEPAGGADAPNGMKKRLFEIFDGWCDNVLDL-LHATEED--AILRRDIYDRSPGFTWGKGRVTLLGDSIHAMQ 380 (668)
T ss_pred EEEEEEEECCccccccchhHHHHHHHHhccCCHHHHHH-HHhCccc--cceeeeEEeccCCCccccCcEEEEcCccCCCC
Confidence 11111211110 0 011112222222222 12222221 1110000 001122332222 2456799999999999999
Q ss_pred CCCCCchhhHHHHHHHHHHHHHHHHhCCCC---ChhhhHhhhchhhh
Q 007945 402 PVSFGGFGSLTRHLGRLSTGVYEAVRGDFV---DSYSLSLLNPYMPN 445 (584)
Q Consensus 402 PltGgG~g~~lr~~~~La~~i~~AL~~~~l---s~~~l~~L~~Ye~~ 445 (584)
|..|+|.++++.|+..|+..|.++++.... +....+.|+.|+..
T Consensus 381 P~~GqG~n~AieDa~~La~~L~~~~~~~~~~~~~~~~~~aL~~Ye~~ 427 (668)
T PLN02927 381 PNMGQGGCMAIEDSFQLALELDEAWKQSVETNTPVDVVSSLKRYEES 427 (668)
T ss_pred CccccchHHHHHHHHHHHHHHHHhhccccccCCcccHHHHHHHHHHH
Confidence 999999999999999999999888643110 11112347788874
No 56
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=99.87 E-value=1.7e-20 Score=203.27 Aligned_cols=318 Identities=15% Similarity=0.165 Sum_probs=173.2
Q ss_pred cEEEEcch-HHHHHHHHHHhCC-CeEEEEcCCCCCCCc-ccccCCHHHHHHHHHcCCCccccc-chhhhcccCCceeeec
Q 007945 112 DVIVCGGT-LGIFIATALSFKG-LRVAIVERNTLKGRE-QEWNISRKELLELVESGILVEDDI-DEATATKFNPNRCGFE 187 (584)
Q Consensus 112 DVVIVGGg-~Gl~~Aa~LAr~G-lrVlLIEr~~~~~~~-r~w~Is~~~l~~L~~lGl~~~~el-e~~i~~~~~~~~v~f~ 187 (584)
.|+||||| +|+++|..|+++| ++|+|+||++..+.. ....+++..++.|..+|+.+...- .......+...++.+.
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 81 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFEWR 81 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEEEE
Confidence 69999965 6999999999998 699999998765421 123468888999999998643210 0000011111111111
Q ss_pred CCCc---cc---ccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCCh
Q 007945 188 GKGE---IW---VEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 261 (584)
Q Consensus 188 ~~~~---l~---~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S 261 (584)
.... +. .+..-...+++..|.+.|.+.+. ...+..+++|+++..++++++|++.+|.+++|++||+|||.+|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~--~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vVgADG~~S 159 (414)
T TIGR03219 82 NGSDASYLGATIAPGVGQSSVHRADFLDALLKHLP--EGIASFGKRATQIEEQAEEVQVLFTDGTEYRCDLLIGADGIKS 159 (414)
T ss_pred ecCccceeeeeccccCCcccCCHHHHHHHHHHhCC--CceEEcCCEEEEEEecCCcEEEEEcCCCEEEeeEEEECCCccH
Confidence 1100 00 01100124788889988887763 3567889999999988889999998999999999999999999
Q ss_pred HHHhHhcCC-----CC--CCceeeEEEEeee-ccCCC-c---ceeEEccCCcccccCCCCceEEEEEccCCCCCCccEEE
Q 007945 262 PVVKQIRSG-----RK--PDGVCLVVGSCAR-GFKDN-S---TSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTY 329 (584)
Q Consensus 262 ~v~rql~~~-----~~--~~~~~~~vg~~a~-g~~~~-~---~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~ 329 (584)
.+|+++... .. +.+.+..-+.+.. .+... . ..+-+. ..+.... + ..++++ .||..++. ...+
T Consensus 160 ~vR~~l~~~~~~~~~~p~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~-~~~~~~-~~p~~~g~--~~~~ 233 (414)
T TIGR03219 160 ALRDYVLQGQGQAPVRPRFSGTCAYRGLVDSLQLREAYRAAGLDEHLV-DVPQMYL-G-LDGHIL-TFPVRQGR--LINV 233 (414)
T ss_pred HHHHHhcCccCCCCCCccccCcEEEEEEeeHHHHhhhhcccccccccc-ccceEEE-c-CCCeEE-EEECCCCc--EEEE
Confidence 999987421 11 1111111111100 00000 0 000000 0000000 1 123444 47876652 2222
Q ss_pred EEEccCCC-------C-----CCccHHHHHHHHHhhCcccccccCCceeEEEEEeeeeccccCC-CCCccCCCEEEeCCC
Q 007945 330 MFTYIDPQ-------A-----GSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDS-PLPAAFNRILQFGDA 396 (584)
Q Consensus 330 L~~~~~~~-------~-----~~~~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~~~~~-~~~~~~~rvlLvGDA 396 (584)
+....+.. . .....+++.+.|-...|.++.+ ++... .. ..++.+... ..++..+||+|+|||
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~-~~~~~--~~--~~~~~~~~~~~~~w~~grv~LiGDA 308 (414)
T TIGR03219 234 VAFISDRSQPKPTWPSDTPWVREATQREMLDAFAGWGDAARAL-LECIP--AP--TLWALHDLAELPGYVHGRVALIGDA 308 (414)
T ss_pred EEEEcCcccccCCCCCCCcccCccCHHHHHHHhcCCCHHHHHH-HHhCC--CC--CceeeeecccccceeeCcEEEEEcc
Confidence 22111100 0 0113344444332211222211 01110 00 011222111 225667999999999
Q ss_pred CCCcCCCCCCchhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhchhhh
Q 007945 397 SGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPN 445 (584)
Q Consensus 397 A~~v~PltGgG~g~~lr~~~~La~~i~~AL~~~~ls~~~l~~L~~Ye~~ 445 (584)
||.+.|..|+|.++++.|+..|++.|......+. +. -+.|+.|+..
T Consensus 309 AH~m~P~~GqGa~~AieDA~~La~~L~~~~~~~~-~~--~~al~~Ye~~ 354 (414)
T TIGR03219 309 AHAMLPHQGAGAGQGLEDAYFLARLLGDTELEAG-DL--PALLEAYDDV 354 (414)
T ss_pred cCCCCCCcCcchHhHHHHHHHHHHHHHhhccCcc-hH--HHHHHHHHHH
Confidence 9999999999999999999999988876532211 11 1226677764
No 57
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=99.86 E-value=4.4e-21 Score=198.48 Aligned_cols=325 Identities=16% Similarity=0.133 Sum_probs=201.5
Q ss_pred CccEEEEcc-hHHHHHHHHHHh----CCCeEEEEcCCCCC--C--------CcccccCCHHHHHHHHHcCCCcccccchh
Q 007945 110 TFDVIVCGG-TLGIFIATALSF----KGLRVAIVERNTLK--G--------REQEWNISRKELLELVESGILVEDDIDEA 174 (584)
Q Consensus 110 ~yDVVIVGG-g~Gl~~Aa~LAr----~GlrVlLIEr~~~~--~--------~~r~w~Is~~~l~~L~~lGl~~~~ele~~ 174 (584)
.|||||||| ++|.++|+.|.. +-+||+|+|-...+ + .+|.-.+|+.++..|..+|+|+.. .+.
T Consensus 36 ~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s~kl~~~~~~~~f~Nrvss~s~~s~~~fk~~~awd~i--~~~ 113 (481)
T KOG3855|consen 36 KYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPKLGDFKPSETFSNRVSSISPASISLFKSIGAWDHI--FHD 113 (481)
T ss_pred cCCEEEECCchHHHHHHHHhccCCccchheeeEEecccCccccccccCccccceeecCCcchHHHHHhcCHHHHh--hhh
Confidence 699999996 579999999984 37899999977322 1 134445888899999998988642 121
Q ss_pred hhcccCC---------ceeeecCCCcccccccccceeCHHHHHHHHHH--HHHh-CCCEEEeCceEEEEEEe-------C
Q 007945 175 TATKFNP---------NRCGFEGKGEIWVEDILNLGVSPAKLIEIVKK--RFIS-LGGVIFEGYSVSSICTY-------E 235 (584)
Q Consensus 175 i~~~~~~---------~~v~f~~~~~l~~~~~l~~~vd~~~L~~~L~~--~a~~-~G~~i~~~t~v~~v~~~-------~ 235 (584)
....++. ..+.|.. .... ...++.++++.++..|.. ...+ ..+++...+.+..+.+- +
T Consensus 114 R~~~~~~~~v~Ds~s~a~I~~~~-d~~~--~d~a~iien~nIq~sL~~s~~~s~~~nv~vi~~~k~~~~~~~~~l~~~~n 190 (481)
T KOG3855|consen 114 RYQKFSRMLVWDSCSAALILFDH-DNVG--IDMAFIIENDNIQCSLYNSQLDSESDNVTVINMAKVIDCTIPEYLIKNDN 190 (481)
T ss_pred ccccccceeeecccchhhhhhcc-cccc--ccceeeeehhHHHHHHHHHHHhhhcCceeeecccceeeeccccccCCCCC
Confidence 1122211 1122221 1111 112467888888887773 3333 25799999999888762 1
Q ss_pred C-eEEEEEcCCcEEEccEEEEecCCChHHHhHhcCC---CCCCceeeEEEEeeecc--C-CCcceeEEccCCccc--ccC
Q 007945 236 N-AAVLLLAEGKILSSHLIIDAMGNFSPVVKQIRSG---RKPDGVCLVVGSCARGF--K-DNSTSDVIYSSSSVK--KVG 306 (584)
Q Consensus 236 ~-gv~V~~~~G~~i~ArlVIdADG~~S~v~rql~~~---~~~~~~~~~vg~~a~g~--~-~~~~~di~~~~~~~~--~~~ 306 (584)
. ...+++.+|..+..|++|+|||.+|.+|+..++. ..++....+ ++..-.. . +....+.|...+|+. |++
T Consensus 191 ~~~~~i~l~dg~~~~~~LLigAdg~Ns~vR~~snid~~~~ny~~havV-Atl~l~~~~~~~~~AwQRFlP~GpiAllpl~ 269 (481)
T KOG3855|consen 191 GMWFHITLTDGINFATDLLIGADGFNSVVRKASNIDVASWNYDQHAVV-ATLKLEEEAILNGVAWQRFLPTGPIALLPLS 269 (481)
T ss_pred cceEEEEeccCceeeeceeeccccccchhhhhcCCCcccccccceeee-EEEEecccccccchhHHhcCCCCceeecccc
Confidence 1 3568888999999999999999999999976653 445544422 2211111 1 233445666777776 445
Q ss_pred CCCceEEEEEccCCCCC--------------------CccEEEEEEccCCCCCCccHHHHHHHHHhhCccccccc--CCc
Q 007945 307 DSEVQLFWEAFPAGSGP--------------------LDRTTYMFTYIDPQAGSPKLEELLERYWDLMPEYQGVT--LDN 364 (584)
Q Consensus 307 ~~~~~~~W~~fP~~~g~--------------------~~~~~~L~~~~~~~~~~~~l~~l~~~~~~~lp~~~~~~--l~~ 364 (584)
++...++|..-|..... ..+..|.+..+ ...+...++-+.++.......+.. ..-
T Consensus 270 d~~s~LvWSts~~~a~~L~~lp~e~fv~~lNsaf~~q~~~~~~~~~~~---~al~~~~~~~~sl~~~~k~~~~~q~pp~V 346 (481)
T KOG3855|consen 270 DTLSSLVWSTSPENASILKSLPEERFVDLLNSAFSSQNPRAAYSDDAD---FALNGRAQLSESLLNTSKRLANQQYPPSV 346 (481)
T ss_pred cccccceeecCHHHHHHHhcCCchhHHHHHHHHHhccCCCchhhhchh---hhhcchhhccHHHHhccCcccccccCCeE
Confidence 66678999643321100 00011110000 000011111111221110000100 012
Q ss_pred eeEEEEEeeeeccccCCCCCccCCCEEEeCCCCCCcCCCCCCchhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhchhh
Q 007945 365 LEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMP 444 (584)
Q Consensus 365 ~~~~~~~~g~~P~~~~~~~~~~~~rvlLvGDAA~~v~PltGgG~g~~lr~~~~La~~i~~AL~~~~ls~~~l~~L~~Ye~ 444 (584)
+++.......||+.+.+...++.+|+.++|||||-+||++|||++++..|+..|.+.+.+|+.+| ++..+.+.|+.|+.
T Consensus 347 ~~v~dksRa~FPLgf~ha~~yV~~~~Al~GDAAHr~hPlAgqGvNlg~~dV~~L~~sL~~ai~~g-~DlgS~~~L~~y~~ 425 (481)
T KOG3855|consen 347 FEVGDKSRAQFPLGFGHADEYVTDRVALIGDAAHRVHPLAGQGVNLGFSDVKILVDSLSEAIVSG-LDLGSVEHLEPYER 425 (481)
T ss_pred EEecccceeecccccccHHHhcCCchhhhcchhhccccCcccccCCChhhHHHHHHHHHHHHHhc-ccccchhhhhHHHH
Confidence 34444455678988877778999999999999999999999999999999999999999999987 47777666776665
No 58
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=99.83 E-value=4.2e-19 Score=194.43 Aligned_cols=302 Identities=19% Similarity=0.200 Sum_probs=158.8
Q ss_pred cEEEEcc-hHHHHHHHHHHhCC---CeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhh-----cc---c
Q 007945 112 DVIVCGG-TLGIFIATALSFKG---LRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATA-----TK---F 179 (584)
Q Consensus 112 DVVIVGG-g~Gl~~Aa~LAr~G---lrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~-----~~---~ 179 (584)
||||||| ++|.++|+.|++.+ ++|+|||+...+.........+.....+..+|+-+.+-+..+-. .+ |
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~~~~~vGe~~~p~~~~~~~~lgi~e~~~~~~~~~~~k~g~~f~~w 80 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPDIPRIGVGESTLPSLRPFLRRLGIDEADFMRACDATFKLGIRFVNW 80 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS---SSEEE--THHHHCHHHHT--HHHHCHHCT-EEESEEEEESS
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCCCccccchHHHHHHHHHcCCChHHHHHHhCCeEeccEEeeec
Confidence 7999996 57999999999998 99999999987764433343443334555566543311111100 01 1
Q ss_pred CC--ce--eeec---------------------CC----------------Ccc-------cccccccceeCHHHHHHHH
Q 007945 180 NP--NR--CGFE---------------------GK----------------GEI-------WVEDILNLGVSPAKLIEIV 211 (584)
Q Consensus 180 ~~--~~--v~f~---------------------~~----------------~~l-------~~~~~l~~~vd~~~L~~~L 211 (584)
.. .. ..|. +. ..+ ..+....+.+|+..|++.|
T Consensus 81 ~~~~~~~~~~f~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ayhlDR~~fd~~L 160 (454)
T PF04820_consen 81 GERGESYFHPFGSYGPPIDGVDFHHYWLRLRAAGFDGPFSDFSLSAALAKQGRFAPPPEDFLSPFNYAYHLDRAKFDQFL 160 (454)
T ss_dssp SSCCSEEEEESS---TEETTEEHHHHHHHHHHTTCCSHHHHHHHCHHHHHHTTBTSB-TTSTBTSS-EEEEEHHHHHHHH
T ss_pred CCCCCceEeeccccCCCCCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCCCCcccccCCCCeeEEEeHHHHHHHH
Confidence 00 00 0000 00 000 0111234569999999999
Q ss_pred HHHHHhCCCEEEeCceEEEEEEeCCeE--EEEEcCCcEEEccEEEEecCCChHHHhHh-cCCC-CCCceeeEEEEeeecc
Q 007945 212 KKRFISLGGVIFEGYSVSSICTYENAA--VLLLAEGKILSSHLIIDAMGNFSPVVKQI-RSGR-KPDGVCLVVGSCARGF 287 (584)
Q Consensus 212 ~~~a~~~G~~i~~~t~v~~v~~~~~gv--~V~~~~G~~i~ArlVIdADG~~S~v~rql-~~~~-~~~~~~~~vg~~a~g~ 287 (584)
+++|.+.|+++++++ |+++..++++. .|++++|++++||+||||+|..|.+.++. +.+. ......+.-...+...
T Consensus 161 ~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s~L~~~~L~~~~~~~~~~L~~d~av~~~~ 239 (454)
T PF04820_consen 161 RRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRSLLARKALKVGFRDWSDWLPNDRAVAVQV 239 (454)
T ss_dssp HHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-CCCCCCT-EEEEEETTTCEEEEEEEEEE
T ss_pred HHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccchhhHhhhcCCCccccccccccEEEEEec
Confidence 999999999999885 88888877764 47788899999999999999999998773 2211 0111110000111111
Q ss_pred C--C--CcceeEEccCCcccccCCCCceEEEEEccCCCCCCccEEEEEEccCCCCCCccHHHHHHHHHhhCcccccccCC
Q 007945 288 K--D--NSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYMFTYIDPQAGSPKLEELLERYWDLMPEYQGVTLD 363 (584)
Q Consensus 288 ~--~--~~~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~L~~~~~~~~~~~~l~~l~~~~~~~lp~~~~~~l~ 363 (584)
+ + ..+..+. .. ..+|+| .+|..++ +.+++ .+..... +-++.++++.+.++..... .
T Consensus 240 ~~~~~~~~~T~~~-----a~-----~~GW~W-~IPL~~~---~~~G~-V~s~~~~---s~~~A~~~l~~~l~~~~~~--~ 299 (454)
T PF04820_consen 240 PNEDPPEPYTRST-----AF-----EAGWIW-YIPLQNR---RGSGY-VYSSDFI---SDDEAEAELLAYLGGSPEA--E 299 (454)
T ss_dssp E-SSCTTSSEEEE-----EE-----SSEEEE-EEEESSE---EEEEE-EEETTTS---HHHHHHHHHHHHHTCHCTT--S
T ss_pred CcCCCCCCceeEE-----ec-----CCceEE-EccCCCc---ceEEE-EeccccC---CHHHHHHHHHHhcchhhhc--c
Confidence 1 0 0111110 11 258999 5998864 33322 2322111 2223333333333221111 1
Q ss_pred ceeEEEEEeeeeccccCCCCCccCCCEEEeCCCCCCcCCCCCCchhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhchh
Q 007945 364 NLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYM 443 (584)
Q Consensus 364 ~~~~~~~~~g~~P~~~~~~~~~~~~rvlLvGDAA~~v~PltGgG~g~~lr~~~~La~~i~~AL~~~~ls~~~l~~L~~Ye 443 (584)
. ...+...| ...+...+|+++|||||++++|+++.|+.+++.. ++.|.+++..+..+... +..|+
T Consensus 300 ~-~~i~~~~g-------~~~~~~~~n~vavGdAAgFiDPL~StGI~la~~a----a~~l~~~l~~~~~~~~~---~~~Yn 364 (454)
T PF04820_consen 300 P-RHIRFRSG-------RRKQFWGKNCVAVGDAAGFIDPLESTGIHLALSA----AEALAEALPDDDFSPAA---LDRYN 364 (454)
T ss_dssp C-EEEE-S-E-------EESSSEETTEEE-CCCTEE--GGGSHHHHHHHHH----HHHHHHTHHCTTCCHHH---HHHHH
T ss_pred h-hhhccccc-------chhhcccCCEEEEcchhhccCccccccHHHHHHH----HHHHHHhcccCCCCHHH---HHHHH
Confidence 1 11111111 1235678999999999999999999999988874 45566677766555443 56787
Q ss_pred hhhhHH
Q 007945 444 PNLSAS 449 (584)
Q Consensus 444 ~~~~~~ 449 (584)
..+...
T Consensus 365 ~~~~~~ 370 (454)
T PF04820_consen 365 RRMRRE 370 (454)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 755444
No 59
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=99.82 E-value=3.2e-19 Score=186.09 Aligned_cols=294 Identities=18% Similarity=0.178 Sum_probs=155.4
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCc-ccccCCHHHHHHHHHcCCCcccccchhhhccc--CCceeee
Q 007945 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGRE-QEWNISRKELLELVESGILVEDDIDEATATKF--NPNRCGF 186 (584)
Q Consensus 111 yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~-r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~--~~~~v~f 186 (584)
-+||||||| +|+++|..|+|+|++|+|+|++..++.. ...++.-...+.|+.+|+-+ .+.... -..++-.
T Consensus 3 ~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~~g~si~L~~ng~~aLkai~~~e------~i~~~gip~~~~v~~ 76 (420)
T KOG2614|consen 3 PKVVIVGGGIVGLATALALHRKGIDVVVLESREDPRGEGTSINLALNGWRALKAIGLKE------QIREQGIPLGGRVLI 76 (420)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccccccCCcceeehhhHHHHHHHcccHH------HHHHhcCcccceeee
Confidence 489999987 5999999999999999999997766543 23445555677777777321 111111 0111111
Q ss_pred cC--CC---ccccccc--ccceeCHHHHHHHHHHHHHhCCCEEEeCc------eEEEEEEeCCeEEEEEcCCcEEEccEE
Q 007945 187 EG--KG---EIWVEDI--LNLGVSPAKLIEIVKKRFISLGGVIFEGY------SVSSICTYENAAVLLLAEGKILSSHLI 253 (584)
Q Consensus 187 ~~--~~---~l~~~~~--l~~~vd~~~L~~~L~~~a~~~G~~i~~~t------~v~~v~~~~~gv~V~~~~G~~i~ArlV 253 (584)
++ +. .+.+++. .-..+.+..+...+...+... ..++.+. ....++......+|++.+|.++.+|++
T Consensus 77 ~~~sg~~~~~~~~~~~~~~i~r~~~r~ll~~lL~~a~~~-~~ikf~~~~~~~~~~~~~~~~~~~~~v~l~~g~~~~~dll 155 (420)
T KOG2614|consen 77 HGDSGKEVSRILYGEPDEYILRINRRNLLQELLAEALPT-GTIKFHSNLSCTSKDVEIETLGKKLVVHLSDGTTVKGDLL 155 (420)
T ss_pred ecCCCCeeEecccCCchHHHHHHHHHHHHHHHHHhhcCC-CeeecccccccccccceeeecccccceecCCCcEEEeeEE
Confidence 11 11 0111111 111244555555555555443 3444442 444444445556788889999999999
Q ss_pred EEecCCChHHHhHhcCC-CCCCceeeEEEEeeeccC-CCcc-eeEEccCCcccccCCCCceEEEEEccCCCCCCccEEEE
Q 007945 254 IDAMGNFSPVVKQIRSG-RKPDGVCLVVGSCARGFK-DNST-SDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRTTYM 330 (584)
Q Consensus 254 IdADG~~S~v~rql~~~-~~~~~~~~~vg~~a~g~~-~~~~-~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~~~L 330 (584)
|+|||+.|.||+.+... .+++..|-..|... ++ .... ..++. ... +.-+.| |.+.. ....|.
T Consensus 156 igCDGa~S~Vr~~l~~~~p~~~~~~ayrg~~~--~~~~~~~~~~vf~----~~~----~~~~~~---~~~~~--~~~~y~ 220 (420)
T KOG2614|consen 156 IGCDGAYSKVRKWLGFKEPRYDGSQAYRGLGF--IPNGIPFGKKVFA----IYG----NGLHSW---PRPGF--HLIAYW 220 (420)
T ss_pred EEcCchHHHHHHHhcccCCcceeEEEEeeeee--ccCCCCcccceec----ccC----CeEEEc---ccCCc--eEEEEE
Confidence 99999999999998754 33444332211110 11 1111 11111 110 112222 22211 011221
Q ss_pred EEc--------cCC-CCC--CccHHHHHHHHHhhCccccccc-CCceeEEEEEeeeeccccCCCCCccCCCEEEeCCCCC
Q 007945 331 FTY--------IDP-QAG--SPKLEELLERYWDLMPEYQGVT-LDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASG 398 (584)
Q Consensus 331 ~~~--------~~~-~~~--~~~l~~l~~~~~~~lp~~~~~~-l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLvGDAA~ 398 (584)
+.- ... .++ .....+..+.+.+.+|+.-... .+.+ .+...-..|.+.....+...++++|+|||||
T Consensus 221 ~~~k~~t~t~~~~~~e~~~l~~~~~~v~~~~~en~~d~i~~~~~e~i--~~t~l~~r~p~~~i~~~~s~~~vvL~GDAaH 298 (420)
T KOG2614|consen 221 FLDKSLTSTDFAPFDEPEKLKKTSLEVVDFFPENFPDIIELTGEESI--VRTPLADRPPWPLISVKCSPGNVVLLGDAAH 298 (420)
T ss_pred eecCCcccccccCcCCHHHHhhhHHHHHHHhHHhHHHHHHhcChHHh--hhchhhhcCCcCeeeeccCCCeEEEeccccc
Confidence 110 000 000 1123344444444444433321 1111 1110001111100011223468999999999
Q ss_pred CcCCCCCCchhhHHHHHHHHHHHHHHHHhC
Q 007945 399 IQSPVSFGGFGSLTRHLGRLSTGVYEAVRG 428 (584)
Q Consensus 399 ~v~PltGgG~g~~lr~~~~La~~i~~AL~~ 428 (584)
.+-|.-|||.+.++.|+-.|++.+++|..+
T Consensus 299 aM~Pf~GQG~n~a~ED~~VLa~~L~~~~~d 328 (420)
T KOG2614|consen 299 AMTPFLGQGGNCAFEDCVVLAECLDEAIND 328 (420)
T ss_pred ccCCcccccccchHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999999873
No 60
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=99.78 E-value=9.1e-17 Score=165.08 Aligned_cols=393 Identities=17% Similarity=0.190 Sum_probs=208.6
Q ss_pred CCCCccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCC-CcccccCCHHHHHHHHHcCCCccc-ccchhhhcccCCce
Q 007945 107 AVGTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG-REQEWNISRKELLELVESGILVED-DIDEATATKFNPNR 183 (584)
Q Consensus 107 ~~~~yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~-~~r~w~Is~~~l~~L~~lGl~~~~-ele~~i~~~~~~~~ 183 (584)
.+..+||||||+| +|+++|++|+|.|.||.||||.-... +-...-+.+.....|.++|+-+-. +++......|
T Consensus 42 ~~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~EPdRivGEllQPGG~~~L~~LGl~Dcve~IDAQ~v~Gy---- 117 (509)
T KOG1298|consen 42 NDGAADVIIVGAGVAGSALAYALAKDGRRVHVIERDLSEPDRIVGELLQPGGYLALSKLGLEDCVEGIDAQRVTGY---- 117 (509)
T ss_pred cCCcccEEEECCcchHHHHHHHHhhCCcEEEEEecccccchHHHHHhcCcchhHHHHHhCHHHHhhcccceEeeee----
Confidence 4457999999976 69999999999999999999985321 111223445566788888875321 1222222222
Q ss_pred eeecCCCcccccc--------cccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEEc--CCc--EEEc
Q 007945 184 CGFEGKGEIWVED--------ILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLA--EGK--ILSS 250 (584)
Q Consensus 184 v~f~~~~~l~~~~--------~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~-V~~~--~G~--~i~A 250 (584)
.-|.++.+...|. .-+..+.+.+|.+.|++++......-++..+|.++..+++.++ |+.+ .|+ +..|
T Consensus 118 ~ifk~gk~v~~pyP~~~f~~d~~GrsFhnGRFvq~lR~ka~slpNV~~eeGtV~sLlee~gvvkGV~yk~k~gee~~~~A 197 (509)
T KOG1298|consen 118 AIFKDGKEVDLPYPLKNFPSDPSGRSFHNGRFVQRLRKKAASLPNVRLEEGTVKSLLEEEGVVKGVTYKNKEGEEVEAFA 197 (509)
T ss_pred EEEeCCceeeccCCCcCCCCCcccceeeccHHHHHHHHHHhcCCCeEEeeeeHHHHHhccCeEEeEEEecCCCceEEEec
Confidence 1222222222221 2244577789999999999988777677777888876666332 4443 343 6889
Q ss_pred cEEEEecCCChHHHhHhcCCCCC-CceeeEEEEeeec--cCCCcceeEEccCCcccccCCCCceEEEEEccCCCCCCccE
Q 007945 251 HLIIDAMGNFSPVVKQIRSGRKP-DGVCLVVGSCARG--FKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRT 327 (584)
Q Consensus 251 rlVIdADG~~S~v~rql~~~~~~-~~~~~~vg~~a~g--~~~~~~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~ 327 (584)
.+-|-|||-.|.+||.+...... -..+ .||....+ .+....++++++. |.+ +. .||....+ +
T Consensus 198 pLTvVCDGcfSnlRrsL~~~~v~~V~S~-fVG~vl~N~~l~~p~hghvIL~~-psp---------il-~Y~ISStE---v 262 (509)
T KOG1298|consen 198 PLTVVCDGCFSNLRRSLCDPKVEEVPSY-FVGLVLKNCRLPAPNHGHVILSK-PSP---------IL-VYQISSTE---V 262 (509)
T ss_pred ceEEEecchhHHHHHHhcCCcccccchh-eeeeeecCCCCCCCCcceEEecC-CCc---------EE-EEEecchh---e
Confidence 99999999999999988532211 0111 23333222 2234566776652 221 11 46655431 3
Q ss_pred EEEEEccCC-CCC--CccHHHHHHHHHh-hCccc-ccccCCceeEEEEEeeeeccccCCCCCccCCCEEEeCCCCCCcCC
Q 007945 328 TYMFTYIDP-QAG--SPKLEELLERYWD-LMPEY-QGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSP 402 (584)
Q Consensus 328 ~~L~~~~~~-~~~--~~~l~~l~~~~~~-~lp~~-~~~~l~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLvGDAA~~v~P 402 (584)
.-++.+... -+. +..+..++.+-+. ..|.- +..-++.++ ....-..|..+..+......+++++|||--+-||
T Consensus 263 Rcl~~v~g~~~Psi~~gem~~~mk~~v~PqiP~~lR~~F~~av~--~g~irsmpn~~mpa~~~~~~G~illGDAfNMRHP 340 (509)
T KOG1298|consen 263 RCLVDVPGQKLPSIANGEMATYMKESVAPQIPEKLRESFLEAVD--EGNIRSMPNSSMPATLNDKKGVILLGDAFNMRHP 340 (509)
T ss_pred EEEEecCcccCCcccchhHHHHHHHhhCcCCCHHHHHHHHHHhh--ccchhcCccccCCCCcCCCCceEEEcccccccCC
Confidence 334444321 010 1122222222111 11211 111000110 0011134544333334567899999999999999
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhchhhhhhHHHHHHHHhhccccCCCChHHHHHHHHHHHHHHHh
Q 007945 403 VSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLSASWLFQRAMSAKQQSDVSPDFINELLYVNFQCMQK 482 (584)
Q Consensus 403 ltGgG~g~~lr~~~~La~~i~~AL~~~~ls~~~l~~L~~Ye~~~~~~~~l~k~m~~~~~~~~~~~~in~ll~~~f~~~~~ 482 (584)
+||+|+..++.|...|-+.|.- ..+-.+-+.+..|-. +.+-.+|.| .-.||-|.+++..+|-.
T Consensus 341 ltggGMtV~l~Di~lLr~ll~p-----l~dL~d~ekv~~~i~---sFy~~RKp~---------s~tINtLa~Aly~vf~a 403 (509)
T KOG1298|consen 341 LTGGGMTVALSDIVLLRRLLKP-----LPDLSDAEKVSDYIK---SFYWIRKPY---------SATINTLANALYQVFVA 403 (509)
T ss_pred ccCCceEeehhHHHHHHHHhcc-----ccccccHHHHHHHHH---HHHHhhcch---------hHHHHHHHHHHHHHhcC
Confidence 9999999999988877665532 112222222222222 111122222 33467777777766665
Q ss_pred cCCcccccccccccchhHHHHHHHHHHHhCCCChH---HHHhhcCcchhhhhhHHHHHHHHHHHHHhhh
Q 007945 483 LGDPVLRPFLQDVIKFGPLAKTLGLVMLNKPQIIP---SIFKQVGIPVLVDWSGHFFMLGYYTLLSTFA 548 (584)
Q Consensus 483 lp~~~~~~fl~d~~~~~~l~~~~~~~~~~~P~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 548 (584)
-.++.+..+=+ .-..-+.+--.-+. .+|.-+...+ +..+.||+..++|+.-.-+.
T Consensus 404 s~dea~~~mr~----------gCfdYl~~GG~c~sGpv~lLsGlnP~P-l~Lv~HffAValy~i~~ll~ 461 (509)
T KOG1298|consen 404 STDEARKAMRK----------GCFDYLKRGGFCVSGPVALLSGLNPRP-LSLVLHFFAVALYGIYRLLS 461 (509)
T ss_pred CchHHHHHHHH----------HHHHHHhcCCccccchHHHhcCCCCCc-hHHHHHHHHHHHHHHHHHcC
Confidence 44444433211 11111111111111 1111111111 36788999999999876543
No 61
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=99.72 E-value=2.8e-16 Score=182.60 Aligned_cols=285 Identities=16% Similarity=0.137 Sum_probs=152.2
Q ss_pred cEEEEcc-hHHHHHHHHHHhC--CCeEEEEcCCCCCCCc-ccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeec
Q 007945 112 DVIVCGG-TLGIFIATALSFK--GLRVAIVERNTLKGRE-QEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE 187 (584)
Q Consensus 112 DVVIVGG-g~Gl~~Aa~LAr~--GlrVlLIEr~~~~~~~-r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~ 187 (584)
+|+|||| ++|+++|..|+++ |++|+|+||++..... ..-.+++..++.|...+-.....+... ...+....+.+.
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~~~~G~Gi~ls~~~l~~L~~~~~~~~~~~~~~-~~~~~~~~~~~~ 80 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPYDTFGWGVVFSDATLGNLRAADPVSAAAIGDA-FNHWDDIDVHFK 80 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCCcccCcceEccHHHHHHHHhcCHHHHHHHHHh-cccCCceEEEEC
Confidence 7999996 5699999999988 9999999999864321 112477777777765441000001000 011222222222
Q ss_pred CCCccccccccc-ceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChHHHhH
Q 007945 188 GKGEIWVEDILN-LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQ 266 (584)
Q Consensus 188 ~~~~l~~~~~l~-~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~v~rq 266 (584)
+ ..+ ...... +.+++..|++.|.+++.+.|++++.+++++++.. ..++|++||+|||.+|.+|++
T Consensus 81 g-~~~-~~~g~~~~~i~R~~L~~~L~e~a~~~GV~i~~g~~v~~i~~------------~~~~~D~VVgADG~~S~vR~~ 146 (765)
T PRK08255 81 G-RRI-RSGGHGFAGIGRKRLLNILQARCEELGVKLVFETEVPDDQA------------LAADADLVIASDGLNSRIRTR 146 (765)
T ss_pred C-EEE-EECCeeEecCCHHHHHHHHHHHHHHcCCEEEeCCccCchhh------------hhcCCCEEEEcCCCCHHHHHH
Confidence 1 111 111111 3588999999999999999999999998876521 125799999999999999997
Q ss_pred hcCCCCCCceeeEEEEeeeccCCCcceeEEccCCcccccCCCCceEEEE-EccCCCCCCccEEEEEEccCC----CC---
Q 007945 267 IRSGRKPDGVCLVVGSCARGFKDNSTSDVIYSSSSVKKVGDSEVQLFWE-AFPAGSGPLDRTTYMFTYIDP----QA--- 338 (584)
Q Consensus 267 l~~~~~~~~~~~~vg~~a~g~~~~~~~di~~~~~~~~~~~~~~~~~~W~-~fP~~~g~~~~~~~L~~~~~~----~~--- 338 (584)
+.....+............+.... ...+-+...+. ..+++|. .||..++ ...+++...+. ..
T Consensus 147 ~~~~~~~~~~~~~~~~~w~g~~~~-~~~~~~~~~~~------~~g~~~~~~y~~~~~---~~~~~~~~~~~~~~~~~~~~ 216 (765)
T PRK08255 147 YADTFQPDIDTRRCRFVWLGTHKV-FDAFTFAFEET------EHGWFQAHAYRFDDD---TSTFIVETPEEVWRAAGLDE 216 (765)
T ss_pred HHhhcCCceecCCCceEEecCCCc-ccceeEEEEec------CCceEEEEEeeeCCC---CcEEEEEcCHHHHHhcCCcc
Confidence 642111110000000001111100 00000000011 1233332 3676544 23444444211 00
Q ss_pred -CCccHHHHHHHHHh-hCcccccccCCceeE-EEEEeeeeccccCCCCCccCCC----EEEeCCCCCCcCCCCCCchhhH
Q 007945 339 -GSPKLEELLERYWD-LMPEYQGVTLDNLEI-QRVIYGIFPTYRDSPLPAAFNR----ILQFGDASGIQSPVSFGGFGSL 411 (584)
Q Consensus 339 -~~~~l~~l~~~~~~-~lp~~~~~~l~~~~~-~~~~~g~~P~~~~~~~~~~~~r----vlLvGDAA~~v~PltGgG~g~~ 411 (584)
......+.+.+.+. ..+...- +..... ....+..++.. ...++..+| ++|+|||||.++|..|+|.+++
T Consensus 217 ~~~~~~~~~l~~~f~~~~~~~~l--i~~~~~~~~~~w~~~~~~--~~~~w~~gr~~~~v~liGDAAH~~~P~~GqG~~~a 292 (765)
T PRK08255 217 MSQEESIAFCEKLFADYLDGHPL--MSNASHLRGSAWINFPRV--VCERWVHWNRRVPVVLMGDAAHTAHFSIGSGTKLA 292 (765)
T ss_pred CCHHHHHHHHHHHhHHhcCCCcc--cccccccccceeeeccee--ccCCCccCCCcccEEEEEcCcccCCCCcchhHHHH
Confidence 01122233333332 2222111 111100 00112222211 123566677 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 007945 412 TRHLGRLSTGVYEA 425 (584)
Q Consensus 412 lr~~~~La~~i~~A 425 (584)
+.|+..|++.|...
T Consensus 293 ieDa~~La~~L~~~ 306 (765)
T PRK08255 293 LEDAIELARCLHEH 306 (765)
T ss_pred HHHHHHHHHHHHHc
Confidence 99999999988653
No 62
>PF08491 SE: Squalene epoxidase; InterPro: IPR013698 This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria. SE was first cloned from Saccharomyces cerevisiae (Baker's yeast) where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway []. Putative transmembrane regions are found to the protein's C terminus. ; GO: 0004506 squalene monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=99.40 E-value=4.7e-11 Score=120.77 Aligned_cols=253 Identities=18% Similarity=0.199 Sum_probs=151.5
Q ss_pred ccEEEEecCCChHHHhHhcCCCCCCceeeEEEEeeec--cCCCcceeEEccCCcccccCCCCceEEEEEccCCCCCCccE
Q 007945 250 SHLIIDAMGNFSPVVKQIRSGRKPDGVCLVVGSCARG--FKDNSTSDVIYSSSSVKKVGDSEVQLFWEAFPAGSGPLDRT 327 (584)
Q Consensus 250 ArlVIdADG~~S~v~rql~~~~~~~~~~~~vg~~a~g--~~~~~~~di~~~~~~~~~~~~~~~~~~W~~fP~~~g~~~~~ 327 (584)
|+++|.|||..|.+|+++. ..++.-....+|.+..+ .+....++++.+. .+.++ .|+.+.+ -+
T Consensus 2 A~LtivaDG~~S~fRk~l~-~~~~~v~S~fvGl~l~~~~lp~~~~ghvil~~----------~~pil-~YqI~~~---et 66 (276)
T PF08491_consen 2 APLTIVADGCFSKFRKELS-DNKPQVRSYFVGLILKDAPLPKPNHGHVILGK----------PGPIL-LYQISSN---ET 66 (276)
T ss_pred CCEEEEecCCchHHHHhhc-CCCCceeeeEEEEEEcCCCCCCCCceEEEEcC----------CCcEE-EEEcCCC---ce
Confidence 7899999999999999987 33333333345555443 2345677777653 23345 5787754 35
Q ss_pred EEEEEccCC-CCC--CccHHHHHHHHHh-hCcccccccC-CceeEEEEEeeeeccccCCCCCccCCCEEEeCCCCCCcCC
Q 007945 328 TYMFTYIDP-QAG--SPKLEELLERYWD-LMPEYQGVTL-DNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSP 402 (584)
Q Consensus 328 ~~L~~~~~~-~~~--~~~l~~l~~~~~~-~lp~~~~~~l-~~~~~~~~~~g~~P~~~~~~~~~~~~rvlLvGDAA~~v~P 402 (584)
..|+.+... -+. +.++++++.+.+. .+|+.-+... ..++ ....-..|..+..+.+...++++++|||+++.||
T Consensus 67 R~Lvdvp~~k~P~~~~g~l~~yl~~~v~P~LP~~lr~~f~~al~--~~rirsMPn~~lp~~~~~~~G~vllGDA~nmrHP 144 (276)
T PF08491_consen 67 RVLVDVPGPKLPSVSNGELKEYLREVVAPQLPEELRPSFEKALE--DGRIRSMPNSFLPASPNWKPGVVLLGDAANMRHP 144 (276)
T ss_pred EEEEEeCCCccCCccchHHHHHHHHHHHhhchHHHHHHHHHHhc--cCCcceecccccCCCCCCCCCEEEEehhhcCcCC
Confidence 566666442 111 2256666655442 3443211100 0111 1112245665544455667999999999999999
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHhCCCCChhhh-HhhhchhhhhhHHHHHHHHhhccccCCCChHHHHHHHHHHHHHHH
Q 007945 403 VSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSL-SLLNPYMPNLSASWLFQRAMSAKQQSDVSPDFINELLYVNFQCMQ 481 (584)
Q Consensus 403 ltGgG~g~~lr~~~~La~~i~~AL~~~~ls~~~l-~~L~~Ye~~~~~~~~l~k~m~~~~~~~~~~~~in~ll~~~f~~~~ 481 (584)
+||||+..++.|+..|++.|... .+..+.+.. +.++.|..+ +.. ..--||-+.+++...|.
T Consensus 145 LTGgGMTVAl~Dv~lL~~lL~~~--~dl~d~~~v~~~l~~f~~~-------------Rk~---~~s~iNiLA~aLY~lF~ 206 (276)
T PF08491_consen 145 LTGGGMTVALNDVVLLRDLLSPI--PDLSDTKAVLEALKKFHWK-------------RKP---LSSVINILAQALYSLFA 206 (276)
T ss_pred ccccchhhHHHHHHHHHHHHhhh--cCcccHHHHHHHHHHHHHH-------------Hcc---chHHHHHHHHHHHHHHh
Confidence 99999999999999999888776 222122221 222322221 111 22257777777776665
Q ss_pred hcCCcccccccccccchhHHHHHHHHHHHhCCCChHHHHhhc-Ccchhh-hhhHHHHHHHHHHHHHhhh
Q 007945 482 KLGDPVLRPFLQDVIKFGPLAKTLGLVMLNKPQIIPSIFKQV-GIPVLV-DWSGHFFMLGYYTLLSTFA 548 (584)
Q Consensus 482 ~lp~~~~~~fl~d~~~~~~l~~~~~~~~~~~P~~~~~~~~~~-g~~~~~-~~~~~~~~~~~~~~~~~~~ 548 (584)
. |.-.+..|-+.-++-+.+-+.-+..-+..+ |+.+.- -.+.||+....|++...+.
T Consensus 207 a-----------~~~~l~~Lr~gcf~Yf~~GG~~~~gpv~LLsgl~p~P~~L~~Hff~Va~~~i~~~~~ 264 (276)
T PF08491_consen 207 A-----------DDDYLKALRQGCFKYFQLGGECVSGPVALLSGLNPRPLVLFYHFFAVAFYAIYLNLK 264 (276)
T ss_pred C-----------CCHHHHHHHHHHHHHHHcCCCCCcchHHHhccCCCCcHHHHHHHHHHHHHHHHHHcc
Confidence 4 222334566667777777777655544444 444433 6788999999999987654
No 63
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.38 E-value=1e-11 Score=126.34 Aligned_cols=133 Identities=24% Similarity=0.320 Sum_probs=93.1
Q ss_pred CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccc---------cCCHHHHHHHHHcCCCcccccchhhhccc
Q 007945 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEW---------NISRKELLELVESGILVEDDIDEATATKF 179 (584)
Q Consensus 110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w---------~Is~~~l~~L~~lGl~~~~ele~~i~~~~ 179 (584)
+|||+|||| ++|+++|..|++.|++|+||||+..++.. .| .+.....+.|.++|+.
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg-~~~gg~~~~~~~v~~~~~~~l~~~gv~------------- 90 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGG-MWGGGMLFNKIVVQEEADEILDEFGIR------------- 90 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCc-cccCccccccccchHHHHHHHHHCCCC-------------
Confidence 699999995 57999999999999999999999765421 11 1111122333333321
Q ss_pred CCceeeecCCCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCC-eE---EEEE----c-----CCc
Q 007945 180 NPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AA---VLLL----A-----EGK 246 (584)
Q Consensus 180 ~~~~v~f~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~-gv---~V~~----~-----~G~ 246 (584)
|.... +. .+.+|+..+...|.+++.++|++++.+++|.++..+++ .+ ++.. . +..
T Consensus 91 ------~~~~~----~g--~~~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~ 158 (257)
T PRK04176 91 ------YKEVE----DG--LYVADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPL 158 (257)
T ss_pred ------ceeec----Cc--ceeccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcE
Confidence 10000 01 13467889999999999999999999999999987666 32 2221 0 224
Q ss_pred EEEccEEEEecCCChHHHhHhc
Q 007945 247 ILSSHLIIDAMGNFSPVVKQIR 268 (584)
Q Consensus 247 ~i~ArlVIdADG~~S~v~rql~ 268 (584)
+++||+||+|+|++|.+.+.+.
T Consensus 159 ~i~Ak~VI~ATG~~a~v~~~l~ 180 (257)
T PRK04176 159 TIEAKAVVDATGHDAEVVSVLA 180 (257)
T ss_pred EEEcCEEEEEeCCCcHHHHHHH
Confidence 7999999999999999998763
No 64
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.36 E-value=1.7e-11 Score=124.58 Aligned_cols=132 Identities=27% Similarity=0.433 Sum_probs=91.5
Q ss_pred CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCccccc---------CCHHHHHHHHHcCCCcccccchhhhccc
Q 007945 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWN---------ISRKELLELVESGILVEDDIDEATATKF 179 (584)
Q Consensus 110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~---------Is~~~l~~L~~lGl~~~~ele~~i~~~~ 179 (584)
+|||+|||| ++|+++|..||++|++|+||||+...+.. .|. +.....+.+.++|+
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg-~~~gg~~~~~~~~~~~~~~~l~~~gi-------------- 85 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGG-SWGGGMLFSKIVVEKPAHEILDEFGI-------------- 85 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcc-ccCCCcceecccccchHHHHHHHCCC--------------
Confidence 699999995 67999999999999999999999876522 121 11111122222221
Q ss_pred CCceeeecCCCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCe--EE-EEEc-----------CC
Q 007945 180 NPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA--AV-LLLA-----------EG 245 (584)
Q Consensus 180 ~~~~v~f~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~g--v~-V~~~-----------~G 245 (584)
.|.... +. .+..++..+.+.|.+++.++|++++.++.+.++..++++ +. |.+. +.
T Consensus 86 -----~~~~~~-----~g-~~~~~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~ 154 (254)
T TIGR00292 86 -----RYEDEG-----DG-YVVADSAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDP 154 (254)
T ss_pred -----Ceeecc-----Cc-eEEeeHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCC
Confidence 111000 00 123467788999999999999999999999999887762 22 2221 12
Q ss_pred cEEEccEEEEecCCChHHHhHh
Q 007945 246 KILSSHLIIDAMGNFSPVVKQI 267 (584)
Q Consensus 246 ~~i~ArlVIdADG~~S~v~rql 267 (584)
.+++|++||||+|+.|.+.+.+
T Consensus 155 ~~i~Ak~VVdATG~~a~v~~~l 176 (254)
T TIGR00292 155 LTQRSRVVVDATGHDAEIVAVC 176 (254)
T ss_pred EEEEcCEEEEeecCCchHHHHH
Confidence 4799999999999999999876
No 65
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.31 E-value=1.2e-11 Score=120.19 Aligned_cols=131 Identities=27% Similarity=0.408 Sum_probs=85.0
Q ss_pred CccEEEEc-chHHHHHHHHHHhCCCeEEEEcCCCCCCCccccc---------CCHHHHHHHHHcCCCcccccchhhhccc
Q 007945 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWN---------ISRKELLELVESGILVEDDIDEATATKF 179 (584)
Q Consensus 110 ~yDVVIVG-Gg~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~---------Is~~~l~~L~~lGl~~~~ele~~i~~~~ 179 (584)
+|||+||| ||+|+++|..||++|+||+++||+..++- ..|. +.......|.++|+-
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GG-g~~~Gg~lf~~iVVq~~a~~iL~elgi~------------- 82 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGG-GMWGGGMLFNKIVVQEEADEILDELGIP------------- 82 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BT-TTTS-CTT---EEEETTTHHHHHHHT---------------
T ss_pred cCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCc-cccccccccchhhhhhhHHHHHHhCCce-------------
Confidence 69999999 56899999999999999999999987652 1121 111122333333321
Q ss_pred CCceeeecCCCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeC-CeE---EEEEc---------CCc
Q 007945 180 NPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYE-NAA---VLLLA---------EGK 246 (584)
Q Consensus 180 ~~~~v~f~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~-~gv---~V~~~---------~G~ 246 (584)
+.... + .-+..|...+-..|..++.++|++++..+.|+++...+ +.+ ++.-. |--
T Consensus 83 ------y~~~~-----~-g~~v~d~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl 150 (230)
T PF01946_consen 83 ------YEEYG-----D-GYYVADSVEFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPL 150 (230)
T ss_dssp -------EE-S-----S-EEEES-HHHHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-E
T ss_pred ------eEEeC-----C-eEEEEcHHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcc
Confidence 11000 1 11346788888999999999999999999999999888 443 33322 123
Q ss_pred EEEccEEEEecCCChHHHhH
Q 007945 247 ILSSHLIIDAMGNFSPVVKQ 266 (584)
Q Consensus 247 ~i~ArlVIdADG~~S~v~rq 266 (584)
+|+|++||||+||.+++.+.
T Consensus 151 ~i~ak~ViDaTGHda~v~~~ 170 (230)
T PF01946_consen 151 TIRAKVVIDATGHDAEVVRV 170 (230)
T ss_dssp EEEESEEEE---SSSSSTSH
T ss_pred eEEEeEEEeCCCCchHHHHH
Confidence 89999999999999976653
No 66
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.28 E-value=7.7e-11 Score=114.05 Aligned_cols=132 Identities=27% Similarity=0.368 Sum_probs=93.3
Q ss_pred CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCccccc---------CCHHHHHHHHHcCCCcccccchhhhccc
Q 007945 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWN---------ISRKELLELVESGILVEDDIDEATATKF 179 (584)
Q Consensus 110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~---------Is~~~l~~L~~lGl~~~~ele~~i~~~~ 179 (584)
+.||+|||| |+|+++|+.||++|+||+++||+-.++- .-|. +-...-+.|.++|+- |
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GG-G~w~GGmlf~~iVv~~~a~~iL~e~gI~------------y 96 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGG-GIWGGGMLFNKIVVREEADEILDEFGIR------------Y 96 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCC-cccccccccceeeecchHHHHHHHhCCc------------c
Confidence 469999994 6899999999999999999999876542 1121 111122334343321 1
Q ss_pred CCceeeecCCCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCC-eE---EEEEc---------CCc
Q 007945 180 NPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AA---VLLLA---------EGK 246 (584)
Q Consensus 180 ~~~~v~f~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~-gv---~V~~~---------~G~ 246 (584)
...+ +. -+..|...+-..|..++.++|++|+..+.|.++...++ +| ++.-. |--
T Consensus 97 -------e~~e-----~g-~~v~ds~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl 163 (262)
T COG1635 97 -------EEEE-----DG-YYVADSAEFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPL 163 (262)
T ss_pred -------eecC-----Cc-eEEecHHHHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcc
Confidence 1001 10 13467778889999999999999999999999998877 33 33221 234
Q ss_pred EEEccEEEEecCCChHHHhHh
Q 007945 247 ILSSHLIIDAMGNFSPVVKQI 267 (584)
Q Consensus 247 ~i~ArlVIdADG~~S~v~rql 267 (584)
+++|++||||+||..++.+-+
T Consensus 164 ~i~a~~VvDaTGHda~v~~~~ 184 (262)
T COG1635 164 TIRAKAVVDATGHDAEVVSFL 184 (262)
T ss_pred eeeEEEEEeCCCCchHHHHHH
Confidence 799999999999999988755
No 67
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=99.27 E-value=1.2e-09 Score=114.01 Aligned_cols=333 Identities=20% Similarity=0.232 Sum_probs=178.7
Q ss_pred CCCccEEEEcc-hHHHHHHHHHH------hCCCeEEEEcCCCCCCCcccc--cCCHHHHHHHHHcCCCcc--cccchhhh
Q 007945 108 VGTFDVIVCGG-TLGIFIATALS------FKGLRVAIVERNTLKGREQEW--NISRKELLELVESGILVE--DDIDEATA 176 (584)
Q Consensus 108 ~~~yDVVIVGG-g~Gl~~Aa~LA------r~GlrVlLIEr~~~~~~~r~w--~Is~~~l~~L~~lGl~~~--~ele~~i~ 176 (584)
++.+||+|||| |+|+++|..|. .+-+||+|+||...++.+--- -|-+..+++|.. =|.+ .++...+
T Consensus 74 ~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGaviep~aldEL~P--~wke~~apl~t~v- 150 (621)
T KOG2415|consen 74 SEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIEPGALDELLP--DWKEDGAPLNTPV- 150 (621)
T ss_pred hccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceeeccchhhhhCc--chhhcCCcccccc-
Confidence 34799999995 68999999753 347899999999987643210 022223333311 0100 0111111
Q ss_pred cccCCceeeecC-CCcccc------cccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEE--EEcC---
Q 007945 177 TKFNPNRCGFEG-KGEIWV------EDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVL--LLAE--- 244 (584)
Q Consensus 177 ~~~~~~~v~f~~-~~~l~~------~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V--~~~~--- 244 (584)
....+.|-- +..+.+ .+.-|+.|+-..+.++|.++|++.|++|+.+..+.++..++|+.++ .+.|
T Consensus 151 ---T~d~~~fLt~~~~i~vPv~~pm~NhGNYvv~L~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI 227 (621)
T KOG2415|consen 151 ---TSDKFKFLTGKGRISVPVPSPMDNHGNYVVSLGQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGI 227 (621)
T ss_pred ---cccceeeeccCceeecCCCcccccCCcEEEEHHHHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeeccccc
Confidence 111122211 111222 2333678888999999999999999999999999999888776543 3322
Q ss_pred ------------CcEEEccEEEEecCCChHHHhHhcCCCCCCcee--eEEEEeee---ccC--CCcceeEEccCC-cccc
Q 007945 245 ------------GKILSSHLIIDAMGNFSPVVKQIRSGRKPDGVC--LVVGSCAR---GFK--DNSTSDVIYSSS-SVKK 304 (584)
Q Consensus 245 ------------G~~i~ArlVIdADG~~S~v~rql~~~~~~~~~~--~~vg~~a~---g~~--~~~~~di~~~~~-~~~~ 304 (584)
|-++.|++-|=|.|-+-.+.+|+-.....+.-| .+.|.... .++ +..-+++.-..+ |+.+
T Consensus 228 ~k~G~pKd~FerGme~hak~TifAEGc~G~Lskqi~kkf~Lr~n~e~qtYglGlKEvWei~~~~~~pG~v~HT~GwPl~~ 307 (621)
T KOG2415|consen 228 SKDGAPKDTFERGMEFHAKVTIFAEGCHGSLSKQIIKKFDLRENCEPQTYGLGLKEVWEIDPENHNPGEVAHTLGWPLDN 307 (621)
T ss_pred cCCCCccccccccceecceeEEEeccccchhHHHHHHHhCcccCCCcceeccccceeEecChhhcCCcceeeeccCcccC
Confidence 237999999999999988888753211111101 01111100 011 111122111100 1111
Q ss_pred cCCC-CceEEEEEccCCCCCCccEEEEEEccCCCCCCc--cHHHHHHHHHhhCcccccccCCceeEEEEEeeeecc---c
Q 007945 305 VGDS-EVQLFWEAFPAGSGPLDRTTYMFTYIDPQAGSP--KLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPT---Y 378 (584)
Q Consensus 305 ~~~~-~~~~~W~~fP~~~g~~~~~~~L~~~~~~~~~~~--~l~~l~~~~~~~lp~~~~~~l~~~~~~~~~~g~~P~---~ 378 (584)
+. ++++. |-..+.. .+.++..-.+ -.+| +.-+.|+++ +..|.++.+ ++.-+ +..+|...+ .
T Consensus 308 --~tYGGsFl---Yh~~d~~--VavGlVVgLd--Y~NP~lsP~~EFQk~-K~hP~i~~v-leGgk--~i~YgARaLNEGG 374 (621)
T KOG2415|consen 308 --DTYGGSFL---YHFNDPL--VAVGLVVGLD--YKNPYLSPYKEFQKM-KHHPSISKV-LEGGK--RIAYGARALNEGG 374 (621)
T ss_pred --CccCceeE---EEcCCCe--EEEEEEEEec--CCCCCCCHHHHHHHh-hcCcchhhh-hcCcc--eeeehhhhhccCC
Confidence 10 11221 1222210 2222221111 1123 333334433 355666654 22221 122222211 1
Q ss_pred cCCCCCccCCCEEEeCCCCCCcCCCCCCchhhHHHHHHHHHHHHHHHHhCCCCChhhhHhhhchhhhhhHHHHHHHHhhc
Q 007945 379 RDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLSASWLFQRAMSA 458 (584)
Q Consensus 379 ~~~~~~~~~~rvlLvGDAA~~v~PltGgG~g~~lr~~~~La~~i~~AL~~~~ls~~~l~~L~~Ye~~~~~~~~l~k~m~~ 458 (584)
+++-.+...++=+|||=+|++++=--=-|-..+|.+....|+.|-+|++....+.-..--...|+.|++.+|.+..+.++
T Consensus 375 fQsiPkl~FPGG~liGcSaGFlNVpKIKGTHtAMKSGmlAAesif~ai~~~~~~k~~~~~~~~Ye~nlkds~V~KeLysv 454 (621)
T KOG2415|consen 375 FQSIPKLVFPGGALIGCSAGFLNVPKIKGTHTAMKSGMLAAESIFEAIKGLPQSKMAGLDPTTYEENLKDSYVWKELYSV 454 (621)
T ss_pred cccCcccccCCceEeecccccccccccccchhhhhcchhHHHHHHHHHhcCccccccccChhhHHHhhhhhHHHHHHHHh
Confidence 12222566788899999999987554467777788777778999999976542221111145899999999988776665
Q ss_pred c
Q 007945 459 K 459 (584)
Q Consensus 459 ~ 459 (584)
+
T Consensus 455 R 455 (621)
T KOG2415|consen 455 R 455 (621)
T ss_pred h
Confidence 4
No 68
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.27 E-value=4.6e-10 Score=117.48 Aligned_cols=66 Identities=21% Similarity=0.316 Sum_probs=57.1
Q ss_pred eeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEEcCCcEEEccEEEEecCCChHH-HhHh
Q 007945 201 GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLAEGKILSSHLIIDAMGNFSPV-VKQI 267 (584)
Q Consensus 201 ~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~-V~~~~G~~i~ArlVIdADG~~S~v-~rql 267 (584)
.+|+..+.+.|.+.+++.|++++.+++|+++..++++++ |++.+|+ ++|+.||.|.|.+|.- .+.+
T Consensus 143 ~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~-i~ad~vV~a~G~~s~~l~~~~ 210 (358)
T PF01266_consen 143 VIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSDGE-IRADRVVLAAGAWSPQLLPLL 210 (358)
T ss_dssp EEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEETTEE-EEECEEEE--GGGHHHHHHTT
T ss_pred cccccchhhhhHHHHHHhhhhccccccccchhhcccccccccccccc-cccceeEecccccceeeeecc
Confidence 489999999999999999999999999999999999998 9998887 9999999999999875 3444
No 69
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.23 E-value=3e-09 Score=118.48 Aligned_cols=67 Identities=13% Similarity=0.174 Sum_probs=56.4
Q ss_pred eeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCC----cEEEccEEEEecCCChH-HHhHh
Q 007945 201 GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG----KILSSHLIIDAMGNFSP-VVKQI 267 (584)
Q Consensus 201 ~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G----~~i~ArlVIdADG~~S~-v~rql 267 (584)
.+|+.+|...+.+.+.+.|++++..++|+++..+++.+.|++.++ .+++|+.||.|+|.+|. +++++
T Consensus 151 ~vd~~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~ 222 (502)
T PRK13369 151 WVDDARLVVLNALDAAERGATILTRTRCVSARREGGLWRVETRDADGETRTVRARALVNAAGPWVTDVIHRV 222 (502)
T ss_pred eecHHHHHHHHHHHHHHCCCEEecCcEEEEEEEcCCEEEEEEEeCCCCEEEEEecEEEECCCccHHHHHhhc
Confidence 478899999999999999999999999999988877777776554 36999999999999987 54543
No 70
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.21 E-value=3.5e-09 Score=118.14 Aligned_cols=66 Identities=18% Similarity=0.242 Sum_probs=54.8
Q ss_pred eeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcC---Cc--EEEccEEEEecCCChH-HHhH
Q 007945 201 GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE---GK--ILSSHLIIDAMGNFSP-VVKQ 266 (584)
Q Consensus 201 ~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~---G~--~i~ArlVIdADG~~S~-v~rq 266 (584)
.+|+.+|...+.+.+.+.|++++.+++|+++..+++.+.|++.+ |+ +|+|+.||.|+|.+|. ++++
T Consensus 151 ~vd~~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~ 222 (508)
T PRK12266 151 WVDDARLVVLNARDAAERGAEILTRTRVVSARRENGLWHVTLEDTATGKRYTVRARALVNAAGPWVKQFLDD 222 (508)
T ss_pred ccCHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEeCCEEEEEEEEcCCCCEEEEEcCEEEECCCccHHHHHhh
Confidence 37888888888889999999999999999998877777776653 43 7999999999999986 4444
No 71
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.13 E-value=4.2e-10 Score=118.13 Aligned_cols=148 Identities=24% Similarity=0.294 Sum_probs=95.0
Q ss_pred CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCc-------ccccCCHHH-HHHH-HHcCCCcccccchhhhccc
Q 007945 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGRE-------QEWNISRKE-LLEL-VESGILVEDDIDEATATKF 179 (584)
Q Consensus 110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~-------r~w~Is~~~-l~~L-~~lGl~~~~ele~~i~~~~ 179 (584)
.+||||||| ++|+++|..++++|.+|+|||+.+-.+.+ |+ |++..+ .+.+ ...+= ...-+.+. -.+|
T Consensus 3 ~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrC-N~Tn~~~~~~~ls~~p~-~~~fl~sa-l~~f 79 (408)
T COG2081 3 RFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRC-NFTNSEAPDEFLSRNPG-NGHFLKSA-LARF 79 (408)
T ss_pred cceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCc-cccccccHHHHHHhCCC-cchHHHHH-HHhC
Confidence 689999996 57999999999999999999999977643 11 332211 1111 11110 00000000 0111
Q ss_pred CCc-eeeecC--CCcccccccccc----eeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccE
Q 007945 180 NPN-RCGFEG--KGEIWVEDILNL----GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHL 252 (584)
Q Consensus 180 ~~~-~v~f~~--~~~l~~~~~l~~----~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~Arl 252 (584)
.+. .+.|.. +..++..+ ++. .-+...+.++|..++++.|++++.++++.++..++++..|.+.+|++|+|+-
T Consensus 80 t~~d~i~~~e~~Gi~~~e~~-~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~ 158 (408)
T COG2081 80 TPEDFIDWVEGLGIALKEED-LGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDS 158 (408)
T ss_pred CHHHHHHHHHhcCCeeEEcc-CceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccE
Confidence 110 011110 01111111 111 1245568899999999999999999999999999888999999999999999
Q ss_pred EEEecCCCh
Q 007945 253 IIDAMGNFS 261 (584)
Q Consensus 253 VIdADG~~S 261 (584)
||-|+|..|
T Consensus 159 lilAtGG~S 167 (408)
T COG2081 159 LILATGGKS 167 (408)
T ss_pred EEEecCCcC
Confidence 999999776
No 72
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.04 E-value=5.4e-09 Score=111.63 Aligned_cols=70 Identities=13% Similarity=0.153 Sum_probs=58.3
Q ss_pred ceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCC-hHHHhHhcCC
Q 007945 200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF-SPVVKQIRSG 270 (584)
Q Consensus 200 ~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~-S~v~rql~~~ 270 (584)
..+++..+.+.|.+.+.+.|++++.+++|+++..+++.+.|.+.++ +++|+.||.|.|.+ |.+++.++..
T Consensus 140 g~i~p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~~~~~v~~~~~-~i~a~~vV~aaG~~~~~l~~~~g~~ 210 (380)
T TIGR01377 140 GVLYAEKALRALQELAEAHGATVRDGTKVVEIEPTELLVTVKTTKG-SYQANKLVVTAGAWTSKLLSPLGIE 210 (380)
T ss_pred cEEcHHHHHHHHHHHHHHcCCEEECCCeEEEEEecCCeEEEEeCCC-EEEeCEEEEecCcchHHHhhhcccC
Confidence 3589999999999999999999999999999988877888877555 79999888888876 5577766543
No 73
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=99.04 E-value=2.9e-09 Score=119.19 Aligned_cols=145 Identities=17% Similarity=0.185 Sum_probs=88.9
Q ss_pred CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCC-CCCCccc----ccCCHH-HHHHHHHcCCCcccccchhhhcccCCc
Q 007945 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNT-LKGREQE----WNISRK-ELLELVESGILVEDDIDEATATKFNPN 182 (584)
Q Consensus 110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~-~~~~~r~----w~Is~~-~l~~L~~lGl~~~~ele~~i~~~~~~~ 182 (584)
+|||||||| ++|+.+|+.+|+.|++|+|||++. ..+...+ -++... -++++..+|-......+.. ...+.
T Consensus 4 ~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~-giq~r-- 80 (618)
T PRK05192 4 EYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKT-GIQFR-- 80 (618)
T ss_pred cceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhc-cCcee--
Confidence 699999996 579999999999999999999884 2221110 012221 2333444441100000100 00010
Q ss_pred eeeecCCCcccccccccceeCHHHHHHHHHHHHHhC-CCEEEeCceEEEEEEeCCeEE-EEEcCCcEEEccEEEEecCCC
Q 007945 183 RCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAV-LLLAEGKILSSHLIIDAMGNF 260 (584)
Q Consensus 183 ~v~f~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~-G~~i~~~t~v~~v~~~~~gv~-V~~~~G~~i~ArlVIdADG~~ 260 (584)
......+...+.+ ...+|+..+...+.+.+.+. |++++ .+.|+++..+++.+. |.+.+|.++.|+.||+|+|.+
T Consensus 81 ~ln~skGpAV~s~---RaQiDr~ly~kaL~e~L~~~~nV~I~-q~~V~~Li~e~grV~GV~t~dG~~I~Ak~VIlATGTF 156 (618)
T PRK05192 81 MLNTSKGPAVRAL---RAQADRKLYRAAMREILENQPNLDLF-QGEVEDLIVENGRVVGVVTQDGLEFRAKAVVLTTGTF 156 (618)
T ss_pred ecccCCCCceeCc---HHhcCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEecCCEEEEEEECCCCEEECCEEEEeeCcc
Confidence 0000001112211 12588999999999999877 56765 567888887777665 777889999999999999976
Q ss_pred h
Q 007945 261 S 261 (584)
Q Consensus 261 S 261 (584)
+
T Consensus 157 L 157 (618)
T PRK05192 157 L 157 (618)
T ss_pred h
Confidence 5
No 74
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.03 E-value=5.6e-09 Score=112.57 Aligned_cols=71 Identities=18% Similarity=0.198 Sum_probs=60.5
Q ss_pred ceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCe-EEEEEcCCcE-EEccEEEEecCCChH-HHhHhcCC
Q 007945 200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AVLLLAEGKI-LSSHLIIDAMGNFSP-VVKQIRSG 270 (584)
Q Consensus 200 ~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~g-v~V~~~~G~~-i~ArlVIdADG~~S~-v~rql~~~ 270 (584)
..||+..+-..|.+.+.++|+++..+++|++++.++|+ ..+.+.+|++ ++||.||.|.|..|. +++..+..
T Consensus 148 giV~~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~~~~ak~Vin~AGl~Ad~la~~~g~~ 221 (429)
T COG0579 148 GIVDPGELTRALAEEAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGLYADPLAQMAGIP 221 (429)
T ss_pred ceEcHHHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCceEEEEecCCcEEEEeeEEEECCchhHHHHHHHhCCC
Confidence 35899999999999999999999999999999999985 5566777766 999999999999886 66666543
No 75
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.01 E-value=9.7e-09 Score=110.73 Aligned_cols=69 Identities=20% Similarity=0.189 Sum_probs=59.2
Q ss_pred ceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChH-HHhHhcC
Q 007945 200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP-VVKQIRS 269 (584)
Q Consensus 200 ~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~-v~rql~~ 269 (584)
..+++..+.+.|.+.+.+.|++++.+++|.++..+++++.|++.+| +++|+.||.|+|.+|. +++.++.
T Consensus 144 g~vd~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~vV~A~G~~s~~l~~~~g~ 213 (393)
T PRK11728 144 GIVDYRAVAEAMAELIQARGGEIRLGAEVTALDEHANGVVVRTTQG-EYEARTLINCAGLMSDRLAKMAGL 213 (393)
T ss_pred eEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEecCCeEEEEECCC-EEEeCEEEECCCcchHHHHHHhCC
Confidence 3578999999999999999999999999999988877888887666 7999999999999995 5665653
No 76
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.00 E-value=3.3e-09 Score=114.80 Aligned_cols=148 Identities=24% Similarity=0.279 Sum_probs=73.9
Q ss_pred ccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCc-------ccccCCHHH--HHHHHHcCCC-cccccchhhhccc
Q 007945 111 FDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGRE-------QEWNISRKE--LLELVESGIL-VEDDIDEATATKF 179 (584)
Q Consensus 111 yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~-------r~w~Is~~~--l~~L~~lGl~-~~~ele~~i~~~~ 179 (584)
|||+|||| ++|+++|..+|+.|++|+|+||++..+.+ |+ |++... ...+..- .- ...-+... -..|
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrC-N~tn~~~~~~~~~~~-~~~~~~f~~~~-l~~f 77 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRC-NLTNLNIDPSEFLSG-YGRNPKFLKSA-LKRF 77 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT--EEEETTSSGGGEECS--TBTTTCTHHH-HHHS
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCc-cccccccchhhHhhh-cccchHHHHHH-HhcC
Confidence 89999996 57999999999999999999999876531 11 111000 0000000 00 00000000 0001
Q ss_pred CCc-eeeecC--CCcccc-cccccce--eCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCe-EEEEEcCCcEEEccE
Q 007945 180 NPN-RCGFEG--KGEIWV-EDILNLG--VSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AVLLLAEGKILSSHL 252 (584)
Q Consensus 180 ~~~-~v~f~~--~~~l~~-~~~l~~~--vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~g-v~V~~~~G~~i~Arl 252 (584)
++. .+.|.. +-++.. ++..-+. -....+.+.|.+++.+.|++++.+++|.++..++++ +.|++++++++.|+-
T Consensus 78 ~~~d~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~ 157 (409)
T PF03486_consen 78 SPEDLIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADA 157 (409)
T ss_dssp -HHHHHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESE
T ss_pred CHHHHHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCE
Confidence 000 000100 000000 0000011 134567889999999999999999999999998887 778887788999999
Q ss_pred EEEecCCCh
Q 007945 253 IIDAMGNFS 261 (584)
Q Consensus 253 VIdADG~~S 261 (584)
||-|+|..|
T Consensus 158 vILAtGG~S 166 (409)
T PF03486_consen 158 VILATGGKS 166 (409)
T ss_dssp EEE----SS
T ss_pred EEEecCCCC
Confidence 999999887
No 77
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=98.99 E-value=1.3e-08 Score=108.52 Aligned_cols=61 Identities=13% Similarity=0.158 Sum_probs=54.3
Q ss_pred eeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChH
Q 007945 201 GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP 262 (584)
Q Consensus 201 ~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~ 262 (584)
.+++.++...+.+.+.+.|++++.+++|+++..+++++.|++.+| +++|+.||.|+|.+|.
T Consensus 145 ~v~p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~~~ 205 (376)
T PRK11259 145 FLRPELAIKAHLRLAREAGAELLFNEPVTAIEADGDGVTVTTADG-TYEAKKLVVSAGAWVK 205 (376)
T ss_pred EEcHHHHHHHHHHHHHHCCCEEECCCEEEEEEeeCCeEEEEeCCC-EEEeeEEEEecCcchh
Confidence 478889999898899889999999999999998888888887666 7999999999999875
No 78
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=98.95 E-value=3.6e-07 Score=98.87 Aligned_cols=69 Identities=10% Similarity=0.001 Sum_probs=51.9
Q ss_pred eeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEe-CCeE-EEEEcCCcEEEcc-EEEEecCCChHHHhHhcCC
Q 007945 201 GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTY-ENAA-VLLLAEGKILSSH-LIIDAMGNFSPVVKQIRSG 270 (584)
Q Consensus 201 ~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~-~~gv-~V~~~~G~~i~Ar-lVIdADG~~S~v~rql~~~ 270 (584)
.+++..+...|.+.+.+.|++++.+++|+++... ++.+ .|++.+| +++|+ +||+|.|..|.+++.++..
T Consensus 179 ~v~p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~~~~l~~~~g~~ 250 (407)
T TIGR01373 179 TARHDAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGHSSVVAAMAGFR 250 (407)
T ss_pred cCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChhhHHHHHHcCCC
Confidence 4688888888999999999999999999999764 3443 3666556 68887 5566677667777765543
No 79
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.95 E-value=9.8e-09 Score=109.51 Aligned_cols=140 Identities=19% Similarity=0.209 Sum_probs=84.1
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEE-cCCCCCCCccc----ccCCHHHH-HHHHHcCCCcccccchhhhcccCCcee
Q 007945 112 DVIVCGGT-LGIFIATALSFKGLRVAIV-ERNTLKGREQE----WNISRKEL-LELVESGILVEDDIDEATATKFNPNRC 184 (584)
Q Consensus 112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLI-Er~~~~~~~r~----w~Is~~~l-~~L~~lGl~~~~ele~~i~~~~~~~~v 184 (584)
|||||||| +|+.+|+++|+.|++|+|+ ++....+...+ -.+.+..+ .++..+|-+ +-.. . +...+
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~----m~~~-a---D~~~i 72 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGL----MGRA-A---DETGI 72 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-S----HHHH-H---HHHEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhH----HHHH-H---hHhhh
Confidence 89999976 7999999999999999999 33322221111 12344333 445455521 1000 0 01112
Q ss_pred eecCCCcccccccc--cceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEEcCCcEEEccEEEEecCC
Q 007945 185 GFEGKGEIWVEDIL--NLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLAEGKILSSHLIIDAMGN 259 (584)
Q Consensus 185 ~f~~~~~l~~~~~l--~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~-V~~~~G~~i~ArlVIdADG~ 259 (584)
.|.-...--.|.+. ...+|+..+.+.+.+.+.+.+...+..++|+++..+++.+. |.+.+|..+.|+.||.|+|.
T Consensus 73 ~~~~lN~skGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 73 HFRMLNRSKGPAVHALRAQVDRDKYSRAMREKLESHPNLTIIQGEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp EEEEESTTS-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEES-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred hhhcccccCCCCccchHhhccHHHHHHHHHHHHhcCCCeEEEEcccceEEecCCeEEEEEeCCCCEEecCEEEEeccc
Confidence 22110000001222 24699999999999999987664445679999999888765 88889999999999999999
No 80
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=98.91 E-value=4.4e-08 Score=108.58 Aligned_cols=70 Identities=13% Similarity=0.158 Sum_probs=55.9
Q ss_pred eeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCC-eEEEEEc---CC--cEEEccEEEEecCCChH-HHhHhcCC
Q 007945 201 GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AAVLLLA---EG--KILSSHLIIDAMGNFSP-VVKQIRSG 270 (584)
Q Consensus 201 ~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~-gv~V~~~---~G--~~i~ArlVIdADG~~S~-v~rql~~~ 270 (584)
.||+..+.+.|.+.+.+.|++++.+++|+++..+++ ++.|++. +| .+++|+.||-|.|.+|. +++.++..
T Consensus 174 ~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s~~La~~~Gi~ 250 (483)
T TIGR01320 174 DVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGALPLLQKSGIP 250 (483)
T ss_pred EECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcchHHHHHHcCCC
Confidence 589999999999999999999999999999987654 5666542 23 36999999888777765 77777654
No 81
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=98.90 E-value=3.8e-08 Score=109.26 Aligned_cols=71 Identities=11% Similarity=0.092 Sum_probs=55.2
Q ss_pred ceeCHHHHHHHHHHHHHhCC-CEEEeCceEEEEEEeCCe-EEEEEc---CCc--EEEccEEEEecCCChH-HHhHhcCC
Q 007945 200 LGVSPAKLIEIVKKRFISLG-GVIFEGYSVSSICTYENA-AVLLLA---EGK--ILSSHLIIDAMGNFSP-VVKQIRSG 270 (584)
Q Consensus 200 ~~vd~~~L~~~L~~~a~~~G-~~i~~~t~v~~v~~~~~g-v~V~~~---~G~--~i~ArlVIdADG~~S~-v~rql~~~ 270 (584)
..||+..+.+.|.+.+++.| ++++.+++|+++..++++ +.|++. +|+ +++|+.||.|.|.+|. ++++++..
T Consensus 178 g~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s~~L~~~~Gi~ 256 (494)
T PRK05257 178 TDVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGALPLLQKSGIP 256 (494)
T ss_pred eEECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcchHHHHHHcCCC
Confidence 35899999999999999887 699999999999886664 666543 353 6999988877776665 77666543
No 82
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.88 E-value=2.8e-08 Score=107.64 Aligned_cols=67 Identities=19% Similarity=0.100 Sum_probs=55.4
Q ss_pred eCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCC-----cEEEccEEEEecCCChH-HHhHhc
Q 007945 202 VSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG-----KILSSHLIIDAMGNFSP-VVKQIR 268 (584)
Q Consensus 202 vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G-----~~i~ArlVIdADG~~S~-v~rql~ 268 (584)
+++.++...|.+.+.+.|++++.+++|+++..+++++++.+.++ .+++|+.||.|.|.+|. +.+.++
T Consensus 194 ~~~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s~~l~~~~~ 266 (410)
T PRK12409 194 GDIHKFTTGLAAACARLGVQFRYGQEVTSIKTDGGGVVLTVQPSAEHPSRTLEFDGVVVCAGVGSRALAAMLG 266 (410)
T ss_pred cCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCccceEecCEEEECCCcChHHHHHHhC
Confidence 67888889999999999999999999999988777777665432 37999999999999986 555544
No 83
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.88 E-value=6.8e-10 Score=121.22 Aligned_cols=147 Identities=18% Similarity=0.267 Sum_probs=29.5
Q ss_pred cEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCccccc----CCHHHHHHHHHcCCCcccccchhhhcccCCceeee
Q 007945 112 DVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWN----ISRKELLELVESGILVEDDIDEATATKFNPNRCGF 186 (584)
Q Consensus 112 DVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~----Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f 186 (584)
||||||| ++|+++|..+|+.|++|+||||....|....-. +..........-|++. ++...+.. .... ..
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~--e~~~~~~~-~~~~--~~ 75 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFR--EFLNRLRA-RGGY--PQ 75 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHH--HHHHST-----------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHH--HHHHHHhh-hccc--cc
Confidence 8999996 568888889999999999999999865321000 0000000000001100 00000000 0000 00
Q ss_pred cCCCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEEc--C-CcEEEccEEEEecCCChH
Q 007945 187 EGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLA--E-GKILSSHLIIDAMGNFSP 262 (584)
Q Consensus 187 ~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~-V~~~--~-G~~i~ArlVIdADG~~S~ 262 (584)
.. ..-+ .....+++..+...|.+.+.++|++++.++.+.++..+++.++ |.+. + ..+|+|+++|||+|. ..
T Consensus 76 ~~-~~~~---~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~-g~ 150 (428)
T PF12831_consen 76 ED-RYGW---VSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSGRKEIRAKVFIDATGD-GD 150 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cc-cccc---ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cc
Confidence 00 0000 0013467778888888888889999999999999998875433 4443 3 457999999999995 45
Q ss_pred HHhHhc
Q 007945 263 VVKQIR 268 (584)
Q Consensus 263 v~rql~ 268 (584)
++...+
T Consensus 151 l~~~aG 156 (428)
T PF12831_consen 151 LAALAG 156 (428)
T ss_dssp ------
T ss_pred cccccc
Confidence 554443
No 84
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.87 E-value=2.5e-08 Score=114.88 Aligned_cols=61 Identities=20% Similarity=0.143 Sum_probs=55.5
Q ss_pred eeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChH
Q 007945 201 GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP 262 (584)
Q Consensus 201 ~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~ 262 (584)
.+++..+.+.|.+.+.+ |++++.+++|+++..++++++|.+.+|..++|+.||.|+|.+|.
T Consensus 404 ~v~p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~~~~~v~t~~g~~~~ad~VV~A~G~~s~ 464 (662)
T PRK01747 404 WLCPAELCRALLALAGQ-QLTIHFGHEVARLEREDDGWQLDFAGGTLASAPVVVLANGHDAA 464 (662)
T ss_pred eeCHHHHHHHHHHhccc-CcEEEeCCEeeEEEEeCCEEEEEECCCcEEECCEEEECCCCCcc
Confidence 47899999999999988 99999999999999888888888877877899999999999986
No 85
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=98.86 E-value=2.8e-08 Score=111.88 Aligned_cols=69 Identities=13% Similarity=0.187 Sum_probs=55.6
Q ss_pred ceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEEc---CC--cEEEccEEEEecCCChH-HHhHhc
Q 007945 200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLA---EG--KILSSHLIIDAMGNFSP-VVKQIR 268 (584)
Q Consensus 200 ~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~-V~~~---~G--~~i~ArlVIdADG~~S~-v~rql~ 268 (584)
..+|+.+|...+.+.+.++|++++.+++|+++..+++.++ |++. ++ .+|+|+.||.|.|.+|. +.+.++
T Consensus 144 g~vdp~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~~l~~~~g 219 (546)
T PRK11101 144 GTVDPFRLTAANMLDAKEHGAQILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQHIAEYAD 219 (546)
T ss_pred cEECHHHHHHHHHHHHHhCCCEEEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEEECCEEEECCChhHHHHHHhcC
Confidence 3589999999999999999999999999999988776543 4442 23 47999999999999997 555443
No 86
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.83 E-value=1.8e-08 Score=97.89 Aligned_cols=136 Identities=17% Similarity=0.216 Sum_probs=77.6
Q ss_pred EEEc-chHHHHHHHHHHhCCCe-EEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCC-ceeeecCCC
Q 007945 114 IVCG-GTLGIFIATALSFKGLR-VAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNP-NRCGFEGKG 190 (584)
Q Consensus 114 VIVG-Gg~Gl~~Aa~LAr~Glr-VlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~-~~v~f~~~~ 190 (584)
+||| |++|+++|+.|.++|++ |++|||+..++.. |.-+.. ...+.+...... ....+. ..+.+....
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~--w~~~~~------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 70 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGV--WRRYYS------YTRLHSPSFFSS--DFGLPDFESFSFDDSP 70 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTH--HHCH-T------TTT-BSSSCCTG--GSS--CCCHSCHHHHH
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCe--eEEeCC------CCccccCccccc--cccCCcccccccccCC
Confidence 6888 56799999999999999 9999999766532 321000 001111000000 000000 000000000
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChH
Q 007945 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP 262 (584)
Q Consensus 191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~ 262 (584)
... ..........+.+.|.+.+.+.+..++.+++|+++..++++++|++.++++++|+.||.|+|..|.
T Consensus 71 ~~~---~~~~~~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~~ 139 (203)
T PF13738_consen 71 EWR---WPHDFPSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYSH 139 (203)
T ss_dssp HHH---HSBSSEBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSCS
T ss_pred CCC---CCcccCCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccCC
Confidence 000 001124566778888888888898999999999999999999999998989999999999998653
No 87
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.82 E-value=3.7e-08 Score=108.55 Aligned_cols=61 Identities=18% Similarity=0.315 Sum_probs=51.9
Q ss_pred ceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChH
Q 007945 200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP 262 (584)
Q Consensus 200 ~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~ 262 (584)
..+++.++...|.+.+.+.|++++++++|++++. ++.+.|++.+| +++|+.||-|.|.+|.
T Consensus 178 g~i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~~~~~v~t~~g-~v~A~~VV~Atga~s~ 238 (460)
T TIGR03329 178 ASVQPGLLVRGLRRVALELGVEIHENTPMTGLEE-GQPAVVRTPDG-QVTADKVVLALNAWMA 238 (460)
T ss_pred eEECHHHHHHHHHHHHHHcCCEEECCCeEEEEee-CCceEEEeCCc-EEECCEEEEccccccc
Confidence 3589999999999999999999999999999874 45566777656 6999999999998864
No 88
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.78 E-value=1.8e-07 Score=103.76 Aligned_cols=69 Identities=17% Similarity=0.126 Sum_probs=57.7
Q ss_pred eeCHHHHHHHHHHHHHh----CC--CEEEeCceEEEEEEe-CCeEEEEEcCCcEEEccEEEEecCCChH-HHhHhcCC
Q 007945 201 GVSPAKLIEIVKKRFIS----LG--GVIFEGYSVSSICTY-ENAAVLLLAEGKILSSHLIIDAMGNFSP-VVKQIRSG 270 (584)
Q Consensus 201 ~vd~~~L~~~L~~~a~~----~G--~~i~~~t~v~~v~~~-~~gv~V~~~~G~~i~ArlVIdADG~~S~-v~rql~~~ 270 (584)
.||+..+.+.+.+.+++ .| ++++.+++|+++..+ ++.+.|++.+| +++|+.||-|.|.+|. +++.++.+
T Consensus 207 ~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~G-~i~A~~VVvaAG~~S~~La~~~Gi~ 283 (497)
T PTZ00383 207 TVDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNRG-EIRARFVVVSACGYSLLFAQKMGYG 283 (497)
T ss_pred EECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECCC-EEEeCEEEECcChhHHHHHHHhCCC
Confidence 58999999999999988 77 679999999999887 44567887666 6999999999999986 77777654
No 89
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.75 E-value=1.1e-07 Score=97.65 Aligned_cols=111 Identities=22% Similarity=0.331 Sum_probs=80.1
Q ss_pred ccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCC
Q 007945 111 FDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK 189 (584)
Q Consensus 111 yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~ 189 (584)
|||+|||| ++|+++|..|++.|++|+|||+....+. |... .. ...+ .+
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~---~~~~-------------------~~-~~~~-------~~- 49 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGMEPGGQ---LTTT-------------------TE-VENY-------PG- 49 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCcc---eeec-------------------cc-cccc-------CC-
Confidence 79999996 5799999999999999999998863221 1000 00 0000 00
Q ss_pred CcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCCh
Q 007945 190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 261 (584)
Q Consensus 190 ~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S 261 (584)
+...+....+...+.+.+++.|++++. ++|++++.+++.+.|++.+++++++|.||-|+|...
T Consensus 50 --------~~~~~~~~~~~~~l~~~~~~~gv~~~~-~~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~~ 112 (300)
T TIGR01292 50 --------FPEGISGPELMEKMKEQAVKFGAEIIY-EEVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGASA 112 (300)
T ss_pred --------CCCCCChHHHHHHHHHHHHHcCCeEEE-EEEEEEEecCCeeEEEeCCCCEEEeCEEEECCCCCc
Confidence 000123345667777888888999888 899999887777888887888999999999999865
No 90
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.75 E-value=2.4e-06 Score=94.30 Aligned_cols=69 Identities=14% Similarity=0.167 Sum_probs=56.2
Q ss_pred cceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcC---Cc--EEEccEEEEecCCChHH-HhHh
Q 007945 199 NLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE---GK--ILSSHLIIDAMGNFSPV-VKQI 267 (584)
Q Consensus 199 ~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~---G~--~i~ArlVIdADG~~S~v-~rql 267 (584)
++.+|..+|.-.....|.+.|++++..++|+++..+++.+-|.+.| |+ +|+|+.||.|.|.++-- ++..
T Consensus 158 D~~vddaRLv~~~a~~A~~~Ga~il~~~~v~~~~re~~v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d~i~~~~ 232 (532)
T COG0578 158 DGVVDDARLVAANARDAAEHGAEILTYTRVESLRREGGVWGVEVEDRETGETYEIRARAVVNAAGPWVDEILEMA 232 (532)
T ss_pred cceechHHHHHHHHHHHHhcccchhhcceeeeeeecCCEEEEEEEecCCCcEEEEEcCEEEECCCccHHHHHHhh
Confidence 3468888999999999999999999999999999988733455544 33 69999999999999984 4444
No 91
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=98.72 E-value=4.4e-06 Score=95.55 Aligned_cols=68 Identities=19% Similarity=0.213 Sum_probs=54.2
Q ss_pred eeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeC--CeEE-EEE---cCCc--EEEccEEEEecCCChH-HHhHhc
Q 007945 201 GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYE--NAAV-LLL---AEGK--ILSSHLIIDAMGNFSP-VVKQIR 268 (584)
Q Consensus 201 ~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~--~gv~-V~~---~~G~--~i~ArlVIdADG~~S~-v~rql~ 268 (584)
.+|+..+...|.+.+.+.|++++..++|+++..++ +.++ |++ .+++ +++|+.||.|+|.+|. +++.++
T Consensus 228 ~vdp~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws~~l~~~~g 304 (627)
T PLN02464 228 QMNDSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFCDEVRKMAD 304 (627)
T ss_pred EEcHHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhHHHHHHhcc
Confidence 47999999999999999999999999999998763 4332 343 2343 6899999999999997 555554
No 92
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.72 E-value=4.1e-07 Score=100.79 Aligned_cols=69 Identities=10% Similarity=0.054 Sum_probs=55.3
Q ss_pred eeCHHHHHHHHHHHHHh-CCCEEEeCceEEEEEEe-CCeEEEEE---cCCc--EEEccEEEEecCCChH-HHhHhcC
Q 007945 201 GVSPAKLIEIVKKRFIS-LGGVIFEGYSVSSICTY-ENAAVLLL---AEGK--ILSSHLIIDAMGNFSP-VVKQIRS 269 (584)
Q Consensus 201 ~vd~~~L~~~L~~~a~~-~G~~i~~~t~v~~v~~~-~~gv~V~~---~~G~--~i~ArlVIdADG~~S~-v~rql~~ 269 (584)
.||...+.+.|.+.+.+ .|++++.+++|+++... +++++|++ .+++ +++|++||-|.|.+|. +++.++.
T Consensus 180 ~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS~~La~~~Gi 256 (497)
T PRK13339 180 DVNFGALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGAGGGAIPLLQKSGI 256 (497)
T ss_pred ecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECCCcchHHHHHHcCC
Confidence 48999999999999865 48999999999999877 66777763 3342 6999999999988886 6666654
No 93
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=98.71 E-value=6.4e-07 Score=98.78 Aligned_cols=67 Identities=16% Similarity=0.294 Sum_probs=55.7
Q ss_pred cceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCe-EEEEEcCCcEEEccEEEEecCCChHHHhH
Q 007945 199 NLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AVLLLAEGKILSSHLIIDAMGNFSPVVKQ 266 (584)
Q Consensus 199 ~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~g-v~V~~~~G~~i~ArlVIdADG~~S~v~rq 266 (584)
+-.+||..+-.+|...|.+.|+.|.+++.|+++....+. +-|++..| .|+|..+|+|.|.+..-...
T Consensus 181 DG~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~~~~gVeT~~G-~iet~~~VNaaGvWAr~Vg~ 248 (856)
T KOG2844|consen 181 DGVMDPAGLCQALARAASALGALVIENCPVTGLHVETDKFGGVETPHG-SIETECVVNAAGVWAREVGA 248 (856)
T ss_pred CcccCHHHHHHHHHHHHHhcCcEEEecCCcceEEeecCCccceeccCc-ceecceEEechhHHHHHhhh
Confidence 345899999999999999999999999999999887664 34766555 49999999999999864433
No 94
>PLN02661 Putative thiazole synthesis
Probab=98.70 E-value=3.2e-07 Score=96.71 Aligned_cols=130 Identities=17% Similarity=0.306 Sum_probs=81.4
Q ss_pred CccEEEEcch-HHHHHHHHHHhC-CCeEEEEcCCCCCCCccccc---------CCHHHHHHHHHcCCCcccccchhhhcc
Q 007945 110 TFDVIVCGGT-LGIFIATALSFK-GLRVAIVERNTLKGREQEWN---------ISRKELLELVESGILVEDDIDEATATK 178 (584)
Q Consensus 110 ~yDVVIVGGg-~Gl~~Aa~LAr~-GlrVlLIEr~~~~~~~r~w~---------Is~~~l~~L~~lGl~~~~ele~~i~~~ 178 (584)
++||+||||| +|+++|..|+++ |++|+||||...++. ..|. +.....+.|.++|+.
T Consensus 92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GG-G~~~gg~l~~~~vv~~~a~e~LeElGV~------------ 158 (357)
T PLN02661 92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGG-GAWLGGQLFSAMVVRKPAHLFLDELGVP------------ 158 (357)
T ss_pred cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCccccc-ceeeCcccccccccccHHHHHHHHcCCC------------
Confidence 6899999965 699999999976 999999999876542 1121 101112233333321
Q ss_pred cCCceeeecCCCcccccccccceeCHHHHHHHHHHHHHh-CCCEEEeCceEEEEEEeCCeE---EEE----EcC--C---
Q 007945 179 FNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAA---VLL----LAE--G--- 245 (584)
Q Consensus 179 ~~~~~v~f~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~-~G~~i~~~t~v~~v~~~~~gv---~V~----~~~--G--- 245 (584)
|..... +....+...+.+.|.+++.+ .|++++.++.++++..+++.+ ++. ..+ +
T Consensus 159 -------fd~~dg------y~vv~ha~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~grVaGVVvnw~~v~~~~~~~s~ 225 (357)
T PLN02661 159 -------YDEQEN------YVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGDRVGGVVTNWALVAQNHDTQSC 225 (357)
T ss_pred -------cccCCC------eeEecchHHHHHHHHHHHHhcCCCEEEeCeEeeeEEecCCEEEEEEeecchhhhccCCCCc
Confidence 110000 00111233445667776665 688999999999998876643 221 111 1
Q ss_pred ---cEEEccEEEEecCCChHHHh
Q 007945 246 ---KILSSHLIIDAMGNFSPVVK 265 (584)
Q Consensus 246 ---~~i~ArlVIdADG~~S~v~r 265 (584)
..|+|+.||.|+|+..++..
T Consensus 226 ~dp~~I~AkaVVlATGh~g~~ga 248 (357)
T PLN02661 226 MDPNVMEAKVVVSSCGHDGPFGA 248 (357)
T ss_pred cceeEEECCEEEEcCCCCCcchh
Confidence 26999999999998887654
No 95
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.66 E-value=2.9e-07 Score=103.10 Aligned_cols=113 Identities=25% Similarity=0.282 Sum_probs=83.3
Q ss_pred CCCccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeee
Q 007945 108 VGTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF 186 (584)
Q Consensus 108 ~~~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f 186 (584)
..+|||+|||| ++|+++|..|++.|++|+|||+. ..+. |.-+ .+ ++. +
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~-~GG~---~~~~---------~~------~~~------------~ 257 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER-FGGQ---VLDT---------MG------IEN------------F 257 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC-CCCe---eecc---------Cc------ccc------------c
Confidence 44699999996 57999999999999999999864 2221 1000 00 000 0
Q ss_pred cCCCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCCh
Q 007945 187 EGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 261 (584)
Q Consensus 187 ~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S 261 (584)
. ..+ ..+...+.+.+.+++++.|++++.++++.++..+++.+.|++.+|.+++++.||.|+|..+
T Consensus 258 ~-----~~~-----~~~~~~l~~~l~~~~~~~gv~i~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~~ 322 (517)
T PRK15317 258 I-----SVP-----ETEGPKLAAALEEHVKEYDVDIMNLQRASKLEPAAGLIEVELANGAVLKAKTVILATGARW 322 (517)
T ss_pred C-----CCC-----CCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCCCc
Confidence 0 000 0234567788888898999999999999999887778888888888999999999999976
No 96
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.66 E-value=5.5e-07 Score=97.53 Aligned_cols=67 Identities=12% Similarity=0.131 Sum_probs=54.9
Q ss_pred eeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEEcCCcEEEccEEEEecCCChH-HHhHhc
Q 007945 201 GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLAEGKILSSHLIIDAMGNFSP-VVKQIR 268 (584)
Q Consensus 201 ~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~-V~~~~G~~i~ArlVIdADG~~S~-v~rql~ 268 (584)
.+++..+...|.+.+.+.|++++.+++|++++.+++++. |++. +.+++|+.||.|.|.+|. +.+.++
T Consensus 197 ~~~p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~t~-~~~~~a~~VV~a~G~~~~~l~~~~g 265 (416)
T PRK00711 197 TGDCQLFTQRLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQTG-GGVITADAYVVALGSYSTALLKPLG 265 (416)
T ss_pred cCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEEeC-CcEEeCCEEEECCCcchHHHHHHhC
Confidence 468888999999999999999999999999988777754 5554 457999999999999986 444443
No 97
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.66 E-value=2.3e-07 Score=104.03 Aligned_cols=141 Identities=17% Similarity=0.188 Sum_probs=85.3
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCC-CCcc----cccCCHHH-HHHHHHcCCCcccccchhhh---cccC
Q 007945 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLK-GREQ----EWNISRKE-LLELVESGILVEDDIDEATA---TKFN 180 (584)
Q Consensus 111 yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~-~~~r----~w~Is~~~-l~~L~~lGl~~~~ele~~i~---~~~~ 180 (584)
||||||||| +|+.+|..+|+.|.+|+|||++... +... ..++.... .+++..+|=. +..+.. ..|.
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~----~~~~~d~~~i~~r 76 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGL----MGKAADKAGLQFR 76 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccch----HHHHHHhhceehe
Confidence 799999965 7999999999999999999987532 1110 01111111 2233333210 001110 0110
Q ss_pred CceeeecCCCcccccccccceeCHHHHHHHHHHHHHhCC-CEEEeCceEEEEEEe-CCe-EEEEEcCCcEEEccEEEEec
Q 007945 181 PNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLG-GVIFEGYSVSSICTY-ENA-AVLLLAEGKILSSHLIIDAM 257 (584)
Q Consensus 181 ~~~v~f~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G-~~i~~~t~v~~v~~~-~~g-v~V~~~~G~~i~ArlVIdAD 257 (584)
....+ . +...+.+ ...+|+..+...+.+.+.+.+ ++++ ...++++..+ ++. +.|.+.+|..+.|+.||.|+
T Consensus 77 ~ln~s-k-gpAV~~~---RaQVDr~~y~~~L~e~Le~~pgV~Il-e~~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILAT 150 (617)
T TIGR00136 77 VLNSS-K-GPAVRAT---RAQIDKVLYRKAMRNALENQPNLSLF-QGEVEDLILEDNDEIKGVVTQDGLKFRAKAVIITT 150 (617)
T ss_pred ecccC-C-CCccccc---HHhCCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEEecCCcEEEEEECCCCEEECCEEEEcc
Confidence 00000 0 1112221 235899999999999999885 4665 4578887665 443 34777788899999999999
Q ss_pred CCCh
Q 007945 258 GNFS 261 (584)
Q Consensus 258 G~~S 261 (584)
|.++
T Consensus 151 GtfL 154 (617)
T TIGR00136 151 GTFL 154 (617)
T ss_pred Cccc
Confidence 9995
No 98
>PRK07804 L-aspartate oxidase; Provisional
Probab=98.64 E-value=5.9e-07 Score=101.11 Aligned_cols=59 Identities=14% Similarity=0.070 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHhCCCEEEeCceEEEEEEeCC----eEEEE-----EcCC-cEEEccEEEEecCCChHH
Q 007945 205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYEN----AAVLL-----LAEG-KILSSHLIIDAMGNFSPV 263 (584)
Q Consensus 205 ~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~----gv~V~-----~~~G-~~i~ArlVIdADG~~S~v 263 (584)
..+.+.|.+++++.|++++.++.++++..+++ ++.+. ..++ .++.|+.||.|+|..|.+
T Consensus 144 ~~i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~~~ 212 (541)
T PRK07804 144 AEVQRALDAAVRADPLDIREHALALDLLTDGTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLGQL 212 (541)
T ss_pred HHHHHHHHHHHHhCCCEEEECeEeeeeEEcCCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCCCC
Confidence 45778888999889999999999999987654 33343 1233 369999999999998853
No 99
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.61 E-value=1.1e-06 Score=98.19 Aligned_cols=58 Identities=17% Similarity=0.216 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCe---EEEEEcCC--cEEEccEEEEecCCChH
Q 007945 205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENA---AVLLLAEG--KILSSHLIIDAMGNFSP 262 (584)
Q Consensus 205 ~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~g---v~V~~~~G--~~i~ArlVIdADG~~S~ 262 (584)
..+.+.|.+.+++.|++++.+++++++..+++. +++...++ .+++|+.||.|+|..+.
T Consensus 190 ~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~~ 252 (506)
T PRK06481 190 GYLVDGLLKNVQERKIPLFVNADVTKITEKDGKVTGVKVKINGKETKTISSKAVVVTTGGFGA 252 (506)
T ss_pred HHHHHHHHHHHHHcCCeEEeCCeeEEEEecCCEEEEEEEEeCCCeEEEEecCeEEEeCCCccc
Confidence 457778888898999999999999999876554 33443443 36999999999997664
No 100
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.60 E-value=4.1e-07 Score=96.81 Aligned_cols=57 Identities=16% Similarity=0.124 Sum_probs=47.3
Q ss_pred eeCHHHHHHHHHHHHHhC-CCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChH
Q 007945 201 GVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP 262 (584)
Q Consensus 201 ~vd~~~L~~~L~~~a~~~-G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~ 262 (584)
.+|+..+...|.+.+.+. |++++.+++|+++.. + .|++.+| +++|+.||-|+|.+|.
T Consensus 141 ~v~p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~--~--~v~t~~g-~i~a~~VV~A~G~~s~ 198 (365)
T TIGR03364 141 RVEPREAIPALAAYLAEQHGVEFHWNTAVTSVET--G--TVRTSRG-DVHADQVFVCPGADFE 198 (365)
T ss_pred eECHHHHHHHHHHHHHhcCCCEEEeCCeEEEEec--C--eEEeCCC-cEEeCEEEECCCCChh
Confidence 489999999999988775 999999999999853 2 5666555 4789999999999975
No 101
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.58 E-value=1.2e-06 Score=96.58 Aligned_cols=58 Identities=19% Similarity=0.205 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEE--cCC--cEEEccEEEEecCCChH
Q 007945 205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLL--AEG--KILSSHLIIDAMGNFSP 262 (584)
Q Consensus 205 ~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~-V~~--~~G--~~i~ArlVIdADG~~S~ 262 (584)
..+...|.+++++.|++++.+++++++..+++.++ |.+ .++ .+++|+.||.|+|..+.
T Consensus 131 ~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~~~ 193 (466)
T PRK08274 131 KALVNALYRSAERLGVEIRYDAPVTALELDDGRFVGARAGSAAGGAERIRAKAVVLAAGGFES 193 (466)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEEEEccCCceEEEECCEEEECCCCCCC
Confidence 45778888899999999999999999987666543 333 233 36899999999997654
No 102
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=98.58 E-value=1.2e-06 Score=99.82 Aligned_cols=153 Identities=16% Similarity=0.166 Sum_probs=84.6
Q ss_pred CccEEEEcc-hHHHHHHHHHHhC--CCeEEEEcCCCCCCCcc----cccC--------CHHH-HHHHHHc--CCCccccc
Q 007945 110 TFDVIVCGG-TLGIFIATALSFK--GLRVAIVERNTLKGREQ----EWNI--------SRKE-LLELVES--GILVEDDI 171 (584)
Q Consensus 110 ~yDVVIVGG-g~Gl~~Aa~LAr~--GlrVlLIEr~~~~~~~r----~w~I--------s~~~-l~~L~~l--Gl~~~~el 171 (584)
++||||||| ++|+++|+.+++. |.+|+||||....+... .+.+ +.+. .+.+... ++.++.-+
T Consensus 11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s~~~a~G~~~~~~~~~~~ds~e~~~~d~~~~~~~~~d~~lv 90 (608)
T PRK06854 11 DTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRSGAVAQGLSAINAYIGEGETPEDYVRYVRKDLMGIVREDLV 90 (608)
T ss_pred EeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCCcccccCccccccccccCCCHHHHHHHHHHhccCCCCHHHH
Confidence 589999996 5799999999998 99999999987543211 1111 1111 1111111 11111000
Q ss_pred chhhh-----ccc-CCceeeecC--CCcccccccccceeCHHHHHHHHHHHHHhCC-CEEEeCceEEEEEEeCCeEE-E-
Q 007945 172 DEATA-----TKF-NPNRCGFEG--KGEIWVEDILNLGVSPAKLIEIVKKRFISLG-GVIFEGYSVSSICTYENAAV-L- 240 (584)
Q Consensus 172 e~~i~-----~~~-~~~~v~f~~--~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G-~~i~~~t~v~~v~~~~~gv~-V- 240 (584)
+..+. .+| ....+.|.. ...+.........++...+.+.|.+.+.+.| ++++.++.++++..+++.++ |
T Consensus 91 ~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~g~~~~~~~G~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~~g~v~Gv~ 170 (608)
T PRK06854 91 YDIARHVDSVVHLFEEWGLPIWKDENGKYVRRGRWQIMINGESYKPIVAEAAKKALGDNVLNRVFITDLLVDDNRIAGAV 170 (608)
T ss_pred HHHHHhHHHHHHHHHHcCCeeeecCCCCccccCCccCCCChHHHHHHHHHHHHhcCCCEEEeCCEEEEEEEeCCEEEEEE
Confidence 00000 000 000122211 0011100000011345567788888888876 89999999999987666432 2
Q ss_pred --EEcCCc--EEEccEEEEecCCChH
Q 007945 241 --LLAEGK--ILSSHLIIDAMGNFSP 262 (584)
Q Consensus 241 --~~~~G~--~i~ArlVIdADG~~S~ 262 (584)
...+++ .++|+.||.|+|..+.
T Consensus 171 ~~~~~~g~~~~i~AkaVILATGG~~~ 196 (608)
T PRK06854 171 GFSVRENKFYVFKAKAVIVATGGAAG 196 (608)
T ss_pred EEEccCCcEEEEECCEEEECCCchhh
Confidence 233453 6999999999998774
No 103
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.57 E-value=1.1e-06 Score=99.59 Aligned_cols=60 Identities=15% Similarity=0.350 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EE---EcCCc--EEEccEEEEecCCChHHH
Q 007945 205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LL---LAEGK--ILSSHLIIDAMGNFSPVV 264 (584)
Q Consensus 205 ~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~-V~---~~~G~--~i~ArlVIdADG~~S~v~ 264 (584)
..+...|.+++.+.|++++.++.++++..+++.++ |. ..+|+ .+.|+.||.|+|..|.+.
T Consensus 129 ~~i~~~L~~~~~~~gv~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~~~~ 194 (566)
T TIGR01812 129 HALLHTLYEQCLKLGVSFFNEYFALDLIHDDGRVRGVVAYDLKTGEIVFFRAKAVVLATGGYGRIY 194 (566)
T ss_pred HHHHHHHHHHHHHcCCEEEeccEEEEEEEeCCEEEEEEEEECCCCcEEEEECCeEEECCCcccCCC
Confidence 35677888888888999999999999988766543 22 23454 699999999999988543
No 104
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.56 E-value=3.8e-07 Score=98.84 Aligned_cols=153 Identities=22% Similarity=0.274 Sum_probs=88.1
Q ss_pred EEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcc------cccCCHH-HHHHH-HHcCCCcccccchhhhcccCCc-e
Q 007945 114 IVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQ------EWNISRK-ELLEL-VESGILVEDDIDEATATKFNPN-R 183 (584)
Q Consensus 114 VIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r------~w~Is~~-~l~~L-~~lGl~~~~ele~~i~~~~~~~-~ 183 (584)
||||| ++|+++|+.++++|++|+|+||++..+.+- ..+++.. ....+ ...+- ....+... ...|+.. .
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~-~~~~~~~~-l~~~~~~d~ 78 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPR-NGKFLRSA-LSRFSNKDL 78 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCC-CcHHHHHH-HHhCCHHHH
Confidence 57785 579999999999999999999998655320 1122110 01111 11110 00000000 0111100 0
Q ss_pred eeecC--CCccccc---ccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecC
Q 007945 184 CGFEG--KGEIWVE---DILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMG 258 (584)
Q Consensus 184 v~f~~--~~~l~~~---~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG 258 (584)
+.|.. +-++... ..+...-....+.+.|.+.+++.|++++.++.|+++..+++.+.|++ +++++.|+.||.|+|
T Consensus 79 ~~~~~~~Gv~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~-~~~~i~ad~VIlAtG 157 (400)
T TIGR00275 79 IDFFESLGLELKVEEDGRVFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKDDNGFGVET-SGGEYEADKVILATG 157 (400)
T ss_pred HHHHHHcCCeeEEecCCEeECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCeEEEEE-CCcEEEcCEEEECCC
Confidence 00000 0000000 00101112456778888899889999999999999987777777776 566899999999999
Q ss_pred CCh-----------HHHhHhcC
Q 007945 259 NFS-----------PVVKQIRS 269 (584)
Q Consensus 259 ~~S-----------~v~rql~~ 269 (584)
..| .++++++.
T Consensus 158 ~~s~p~~gs~G~g~~la~~lG~ 179 (400)
T TIGR00275 158 GLSYPQLGSTGDGYEIAESLGH 179 (400)
T ss_pred CcccCCCCCCcHHHHHHHHCCC
Confidence 987 56666654
No 105
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.54 E-value=1.8e-06 Score=93.64 Aligned_cols=63 Identities=22% Similarity=0.277 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEEc---CCc--EEEccEEEEecCCChH-HHhH
Q 007945 204 PAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLA---EGK--ILSSHLIIDAMGNFSP-VVKQ 266 (584)
Q Consensus 204 ~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~-V~~~---~G~--~i~ArlVIdADG~~S~-v~rq 266 (584)
-..+...|.+.++++|++++.++.++++..+++.|+ |... +|+ +|+|+-||-|+|..+. +.++
T Consensus 140 g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~~~~~~ 209 (417)
T PF00890_consen 140 GKALIEALAKAAEEAGVDIRFNTRVTDLITEDGRVTGVVAENPADGEFVRIKAKAVILATGGFGGELLRQ 209 (417)
T ss_dssp HHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTEEEEEEEEETTTCEEEEEEESEEEE----BGGHHHHH
T ss_pred HHHHHHHHHHHHhhcCeeeeccceeeeEEEeCCceeEEEEEECCCCeEEEEeeeEEEeccCccccccccc
Confidence 456888999999999999999999999999887654 3333 454 6899999999999995 5544
No 106
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.53 E-value=1.6e-06 Score=96.49 Aligned_cols=60 Identities=13% Similarity=0.142 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHh-CCCEEEeCceEEEEEEeCCeEE-EEEcC-C--cEEEccEEEEecCCChHH
Q 007945 204 PAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAAV-LLLAE-G--KILSSHLIIDAMGNFSPV 263 (584)
Q Consensus 204 ~~~L~~~L~~~a~~-~G~~i~~~t~v~~v~~~~~gv~-V~~~~-G--~~i~ArlVIdADG~~S~v 263 (584)
...+.+.|.+++.+ .|++++.++.++++..+++.++ |.+.+ + .+++|+.||.|+|..|.+
T Consensus 127 G~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~~~ 191 (488)
T TIGR00551 127 GREVITTLVKKALNHPNIRIIEGENALDLLIETGRVVGVWVWNRETVETCHADAVVLATGGAGKL 191 (488)
T ss_pred HHHHHHHHHHHHHhcCCcEEEECeEeeeeeccCCEEEEEEEEECCcEEEEEcCEEEECCCcccCC
Confidence 45678888998887 5899999999999987665544 43332 3 369999999999999974
No 107
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=9.3e-07 Score=92.17 Aligned_cols=114 Identities=25% Similarity=0.337 Sum_probs=79.8
Q ss_pred CccEEEEcc-hHHHHHHHHHHhCCCe-EEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeec
Q 007945 110 TFDVIVCGG-TLGIFIATALSFKGLR-VAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE 187 (584)
Q Consensus 110 ~yDVVIVGG-g~Gl~~Aa~LAr~Glr-VlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~ 187 (584)
.|||+|||| |+|+++|..++|+|++ ++++|+....+....+ . ....| ..|.
T Consensus 3 ~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~----------------------~-~veny----pg~~ 55 (305)
T COG0492 3 IYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKT----------------------T-DVENY----PGFP 55 (305)
T ss_pred eeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccc----------------------e-eecCC----CCCc
Confidence 699999995 6799999999999999 6777765443211000 0 00111 1111
Q ss_pred CCCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChHHH
Q 007945 188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVV 264 (584)
Q Consensus 188 ~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~v~ 264 (584)
+ .+.-..|.+.+.+++...|+++.. ..+.+++..++..+|++.++. ++||.||-|+|....--
T Consensus 56 ~------------~~~g~~L~~~~~~~a~~~~~~~~~-~~v~~v~~~~~~F~v~t~~~~-~~ak~vIiAtG~~~~~~ 118 (305)
T COG0492 56 G------------GILGPELMEQMKEQAEKFGVEIVE-DEVEKVELEGGPFKVKTDKGT-YEAKAVIIATGAGARKL 118 (305)
T ss_pred c------------CCchHHHHHHHHHHHhhcCeEEEE-EEEEEEeecCceEEEEECCCe-EEEeEEEECcCCcccCC
Confidence 1 133456788888999888998877 778887766657788887777 99999999999987544
No 108
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=98.53 E-value=9.9e-07 Score=90.69 Aligned_cols=168 Identities=19% Similarity=0.232 Sum_probs=100.3
Q ss_pred CCCccEEEEcchH-HHHHHHHHHhCCCeEEEEcCCCCCCCc---cc-ccCCHHH-------------HHHHHHc------
Q 007945 108 VGTFDVIVCGGTL-GIFIATALSFKGLRVAIVERNTLKGRE---QE-WNISRKE-------------LLELVES------ 163 (584)
Q Consensus 108 ~~~yDVVIVGGg~-Gl~~Aa~LAr~GlrVlLIEr~~~~~~~---r~-w~Is~~~-------------l~~L~~l------ 163 (584)
...+||||||+|+ |+++|..||++|.++++||+-+++... .. -.|-+.+ .+....+
T Consensus 5 ~~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~GSShg~sRIiR~~Y~e~~Y~~m~~ea~e~W~~~~~~~g~ 84 (399)
T KOG2820|consen 5 VKSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRGSSHGISRIIRPAYAEDKYMSMVLEAYEKWRNLPEESGV 84 (399)
T ss_pred ccceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCcccCcccCcceeechhhhhHHHHHHHHHHHHHHHhChhhhce
Confidence 3468999999875 999999999999999999999876421 00 0111111 0100000
Q ss_pred ------CCCc---c--cccchh--------h----------hcccCCceeeecCCCcccccccccceeCHHHHHHHHHHH
Q 007945 164 ------GILV---E--DDIDEA--------T----------ATKFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKR 214 (584)
Q Consensus 164 ------Gl~~---~--~ele~~--------i----------~~~~~~~~v~f~~~~~l~~~~~l~~~vd~~~L~~~L~~~ 214 (584)
+++. . .+++++ + ..+|+. .+.+..+. ..+-+..+-.+...+-+..+...
T Consensus 85 ~~~~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~fP~-~~~l~d~~-~G~~n~~gGvi~a~kslk~~~~~ 162 (399)
T KOG2820|consen 85 KLHCGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRFPS-NIPLPDGW-QGVVNESGGVINAAKSLKALQDK 162 (399)
T ss_pred eecccceeeecCcHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHhCCC-CccCCcch-hhcccccccEeeHHHHHHHHHHH
Confidence 0000 0 001110 0 111111 22222111 11112223347788889999999
Q ss_pred HHhCCCEEEeCceEEEEEE---eCCeEEEEEcCCcEEEccEEEEecCCChH-HH-hHhcCCCCCCcee
Q 007945 215 FISLGGVIFEGYSVSSICT---YENAAVLLLAEGKILSSHLIIDAMGNFSP-VV-KQIRSGRKPDGVC 277 (584)
Q Consensus 215 a~~~G~~i~~~t~v~~v~~---~~~gv~V~~~~G~~i~ArlVIdADG~~S~-v~-rql~~~~~~~~~~ 277 (584)
+++.|+.++.+..+..+.. ++.++.|.+.+|..+.|+-+|-+.|.+-. +. ..++++.+...+.
T Consensus 163 ~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~klL~~~~~~~~Pv~~i~ 230 (399)
T KOG2820|consen 163 ARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWINKLLPTSLAIGFPVAPIQ 230 (399)
T ss_pred HHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHHhhcCcccccCCccceeE
Confidence 9999999999999988864 33467888889999999999999998732 21 1234444444443
No 109
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.52 E-value=1.2e-06 Score=98.14 Aligned_cols=113 Identities=25% Similarity=0.352 Sum_probs=81.1
Q ss_pred CCCccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeee
Q 007945 108 VGTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF 186 (584)
Q Consensus 108 ~~~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f 186 (584)
...|||+|||| ++|+++|..|++.|++|+|||+. ..+... . ..+ ++ .+
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~-~GG~~~--~----------~~~------~~------------~~ 258 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAER-IGGQVK--D----------TVG------IE------------NL 258 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC-CCCccc--c----------CcC------cc------------cc
Confidence 34699999996 57999999999999999999753 222100 0 000 00 00
Q ss_pred cCCCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCCh
Q 007945 187 EGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 261 (584)
Q Consensus 187 ~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S 261 (584)
.+ .+. .....+.+.+.+.+.+.|++++.+++|+++..+++.+.|++.+|.+++++.||.|+|...
T Consensus 259 ~~-----~~~-----~~~~~l~~~l~~~l~~~gv~i~~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~~ 323 (515)
T TIGR03140 259 IS-----VPY-----TTGSQLAANLEEHIKQYPIDLMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGARW 323 (515)
T ss_pred cc-----cCC-----CCHHHHHHHHHHHHHHhCCeEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCc
Confidence 00 000 123456777788888889999999999999887777888888888999999999999874
No 110
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.50 E-value=2e-06 Score=97.59 Aligned_cols=60 Identities=13% Similarity=0.144 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHhC-CCEEEeCceEEEEEEeCCeEE----EEEcCCc--EEEccEEEEecCCChHHH
Q 007945 205 AKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAV----LLLAEGK--ILSSHLIIDAMGNFSPVV 264 (584)
Q Consensus 205 ~~L~~~L~~~a~~~-G~~i~~~t~v~~v~~~~~gv~----V~~~~G~--~i~ArlVIdADG~~S~v~ 264 (584)
..+...|.+++.+. +++++.++.++++..+++.+. +...+|+ .++|+.||.|+|..|.+-
T Consensus 133 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~l~ 199 (582)
T PRK09231 133 FHMLHTLFQTSLKYPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVY 199 (582)
T ss_pred HHHHHHHHHHhhcCCCcEEEeCeEEEEEEEeCCEEEEEEEEEcCCCcEEEEECCEEEECCCCCcCCC
Confidence 35677788887775 789999999999988766543 2334563 799999999999998753
No 111
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=98.49 E-value=2e-06 Score=94.18 Aligned_cols=60 Identities=17% Similarity=0.135 Sum_probs=47.2
Q ss_pred CHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCC----eEEEEEcCCc--EEEccEEEEecCCChH
Q 007945 203 SPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN----AAVLLLAEGK--ILSSHLIIDAMGNFSP 262 (584)
Q Consensus 203 d~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~----gv~V~~~~G~--~i~ArlVIdADG~~S~ 262 (584)
+...+.+.|.+++.+.|++++.+++++++..+++ ++++...+++ .+.|+.||-|+|..|.
T Consensus 128 ~g~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~ 193 (439)
T TIGR01813 128 SGAEIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGS 193 (439)
T ss_pred CHHHHHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCCCCC
Confidence 3456888899999999999999999999988654 2334433444 4789999999998886
No 112
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.49 E-value=2.6e-06 Score=93.39 Aligned_cols=58 Identities=22% Similarity=0.271 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHh-CCCEEEeCceEEEEEEeCCeEE-EE-EcCCc--EEEccEEEEecCCChH
Q 007945 205 AKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAAV-LL-LAEGK--ILSSHLIIDAMGNFSP 262 (584)
Q Consensus 205 ~~L~~~L~~~a~~-~G~~i~~~t~v~~v~~~~~gv~-V~-~~~G~--~i~ArlVIdADG~~S~ 262 (584)
..+.+.|.+++++ .|++++.+++++++..+++.+. |. ..+++ ++.|+-||.|+|..+.
T Consensus 128 ~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~~~~v~Gv~~~~~g~~~~i~Ak~VILAtGG~~~ 190 (433)
T PRK06175 128 KKVEKILLKKVKKRKNITIIENCYLVDIIENDNTCIGAICLKDNKQINIYSKVTILATGGIGG 190 (433)
T ss_pred HHHHHHHHHHHHhcCCCEEEECcEeeeeEecCCEEEEEEEEECCcEEEEEcCeEEEccCcccc
Confidence 4567778888775 4899999999999987666432 22 22443 6999999999998664
No 113
>PRK07121 hypothetical protein; Validated
Probab=98.47 E-value=5e-06 Score=92.53 Aligned_cols=59 Identities=20% Similarity=0.235 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCC-eEE-EEEc-CCc--EEEc-cEEEEecCCChH
Q 007945 204 PAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AAV-LLLA-EGK--ILSS-HLIIDAMGNFSP 262 (584)
Q Consensus 204 ~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~-gv~-V~~~-~G~--~i~A-rlVIdADG~~S~ 262 (584)
...+.+.|.+++++.|++++.+++++++..+++ .++ |... +++ +++| +.||.|+|..+.
T Consensus 176 g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~~ 240 (492)
T PRK07121 176 GAMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGGFAM 240 (492)
T ss_pred hHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCCcCc
Confidence 456788899999999999999999999987654 332 3332 332 6899 999999998874
No 114
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=98.47 E-value=2.7e-06 Score=97.16 Aligned_cols=58 Identities=10% Similarity=0.253 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHhCCCEEEeCceEEEEEE-eCCeEE-EE---EcCCc--EEEccEEEEecCCChH
Q 007945 205 AKLIEIVKKRFISLGGVIFEGYSVSSICT-YENAAV-LL---LAEGK--ILSSHLIIDAMGNFSP 262 (584)
Q Consensus 205 ~~L~~~L~~~a~~~G~~i~~~t~v~~v~~-~~~gv~-V~---~~~G~--~i~ArlVIdADG~~S~ 262 (584)
..+...|.+++.+.|++++.++.++++.. +++.+. |. ..+|+ .++|+.||.|+|..+.
T Consensus 166 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~ 230 (617)
T PTZ00139 166 HAMLHTLYGQSLKYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGGYGR 230 (617)
T ss_pred HHHHHHHHHHHHhCCCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCCCcc
Confidence 46788899999999999999999999987 344332 22 23454 6899999999998764
No 115
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.46 E-value=2.8e-06 Score=96.44 Aligned_cols=59 Identities=17% Similarity=0.363 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE----EEEcCCc--EEEccEEEEecCCChHH
Q 007945 205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV----LLLAEGK--ILSSHLIIDAMGNFSPV 263 (584)
Q Consensus 205 ~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~----V~~~~G~--~i~ArlVIdADG~~S~v 263 (584)
..+.+.|.+++.+.|++++.++.++++..+++.+. +...+|+ .++|+.||.|+|..+.+
T Consensus 135 ~~i~~~L~~~~~~~gi~i~~~t~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~~~ 199 (575)
T PRK05945 135 HAILHELVNNLRRYGVTIYDEWYVMRLILEDNQAKGVVMYHIADGRLEVVRAKAVMFATGGYGRV 199 (575)
T ss_pred HHHHHHHHHHHhhCCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCeEEEEECCEEEECCCCCcCC
Confidence 45778888888888999999999999987665432 2233554 69999999999998754
No 116
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.46 E-value=1.9e-06 Score=97.29 Aligned_cols=111 Identities=17% Similarity=0.279 Sum_probs=76.6
Q ss_pred CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecC
Q 007945 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG 188 (584)
Q Consensus 110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~ 188 (584)
.|||+|||| ++|+++|..|+++|++|+|||+....+... .. ..+ . .+.+
T Consensus 4 ~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~~GG~~~---~~-------------------~~i-~-------~~pg 53 (555)
T TIGR03143 4 IYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDDFGGQIT---IT-------------------SEV-V-------NYPG 53 (555)
T ss_pred cCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCceEE---ec-------------------ccc-c-------cCCC
Confidence 699999996 579999999999999999999875433110 00 000 0 0000
Q ss_pred CCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChH
Q 007945 189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP 262 (584)
Q Consensus 189 ~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~ 262 (584)
. ..+....+.+.+.+.+.+.|++++ .++|+++..+++...|.+.++ ++.++.||-|+|..+.
T Consensus 54 ~----------~~~~~~~l~~~l~~~~~~~gv~~~-~~~V~~i~~~~~~~~V~~~~g-~~~a~~lVlATGa~p~ 115 (555)
T TIGR03143 54 I----------LNTTGPELMQEMRQQAQDFGVKFL-QAEVLDVDFDGDIKTIKTARG-DYKTLAVLIATGASPR 115 (555)
T ss_pred C----------cCCCHHHHHHHHHHHHHHcCCEEe-ccEEEEEEecCCEEEEEecCC-EEEEeEEEECCCCccC
Confidence 0 012334566777778888898875 678888887666667777555 6899999999999753
No 117
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.43 E-value=3.3e-06 Score=93.11 Aligned_cols=145 Identities=13% Similarity=0.099 Sum_probs=86.9
Q ss_pred CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhccc-------CC
Q 007945 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKF-------NP 181 (584)
Q Consensus 110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~-------~~ 181 (584)
..+|+|||| ++|+++|..|++.|++|+++||+...| ..|+.+...-. ..+++-..... .....| +.
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vG--G~W~~~~~~~~--d~~~~~~~~~~--~~s~~Y~~L~tn~p~ 83 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVG--GLWVYTPKSES--DPLSLDPTRSI--VHSSVYESLRTNLPR 83 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCc--ceeecCCCcCC--CccccCCCCcc--cchhhhhhhhccCCH
Confidence 579999996 579999999999999999999998665 23443221100 00111000000 000011 00
Q ss_pred ceeeecC---CCccc-c-cccccceeCHHHHHHHHHHHHHhCCCE--EEeCceEEEEEEeCCeEEEEEcCC--c--EEEc
Q 007945 182 NRCGFEG---KGEIW-V-EDILNLGVSPAKLIEIVKKRFISLGGV--IFEGYSVSSICTYENAAVLLLAEG--K--ILSS 250 (584)
Q Consensus 182 ~~v~f~~---~~~l~-~-~~~l~~~vd~~~L~~~L~~~a~~~G~~--i~~~t~v~~v~~~~~gv~V~~~~G--~--~i~A 250 (584)
....|.+ ..... . .+...+ .....+.+.|.+.+...|.. |..+++|+++...++.++|++.++ . +..+
T Consensus 84 ~~m~f~dfp~~~~~~~~~~~~~~f-p~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~~ 162 (461)
T PLN02172 84 ECMGYRDFPFVPRFDDESRDSRRY-PSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKDEIF 162 (461)
T ss_pred hhccCCCCCCCcccccccCcCCCC-CCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCceEEEEc
Confidence 0111211 00000 0 000001 23567888999999888886 899999999988888898887642 2 4678
Q ss_pred cEEEEecCCCh
Q 007945 251 HLIIDAMGNFS 261 (584)
Q Consensus 251 rlVIdADG~~S 261 (584)
|.||-|+|+.+
T Consensus 163 d~VIvAtG~~~ 173 (461)
T PLN02172 163 DAVVVCNGHYT 173 (461)
T ss_pred CEEEEeccCCC
Confidence 99999999865
No 118
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.42 E-value=4.3e-06 Score=95.23 Aligned_cols=58 Identities=12% Similarity=0.312 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCe-EE-EE---EcCCc--EEEccEEEEecCCChH
Q 007945 205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AV-LL---LAEGK--ILSSHLIIDAMGNFSP 262 (584)
Q Consensus 205 ~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~g-v~-V~---~~~G~--~i~ArlVIdADG~~S~ 262 (584)
..+...|.+++.+.|++++.++.++++..++++ ++ |. ..+|+ .|.|+-||-|+|..+.
T Consensus 149 ~~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~ 213 (598)
T PRK09078 149 HAILHTLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGYGR 213 (598)
T ss_pred HHHHHHHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCcc
Confidence 357788888888889999999999999876532 32 22 23554 6999999999999875
No 119
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.42 E-value=3.5e-06 Score=95.67 Aligned_cols=58 Identities=14% Similarity=0.118 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHh-CCCEEEeCceEEEEEEeCCeEE---E-EEcCCc--EEEccEEEEecCCChHH
Q 007945 206 KLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAAV---L-LLAEGK--ILSSHLIIDAMGNFSPV 263 (584)
Q Consensus 206 ~L~~~L~~~a~~-~G~~i~~~t~v~~v~~~~~gv~---V-~~~~G~--~i~ArlVIdADG~~S~v 263 (584)
.+.+.|.+++.+ .|++++.++.++++..+++.++ + ...+|+ .++|+.||.|+|..+.+
T Consensus 138 ~i~~~L~~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~~ 202 (577)
T PRK06069 138 YIMHTLYSRALRFDNIHFYDEHFVTSLIVENGVFKGVTAIDLKRGEFKVFQAKAGIIATGGAGRL 202 (577)
T ss_pred HHHHHHHHHHHhcCCCEEEECCEEEEEEEECCEEEEEEEEEcCCCeEEEEECCcEEEcCchhccc
Confidence 466777887766 5899999999999987766432 2 223554 58999999999998754
No 120
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.41 E-value=6e-06 Score=93.70 Aligned_cols=59 Identities=12% Similarity=0.248 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHhC-CCEEEeCceEEEEEEeCCeEE----EEEcCCc--EEEccEEEEecCCChHH
Q 007945 205 AKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAV----LLLAEGK--ILSSHLIIDAMGNFSPV 263 (584)
Q Consensus 205 ~~L~~~L~~~a~~~-G~~i~~~t~v~~v~~~~~gv~----V~~~~G~--~i~ArlVIdADG~~S~v 263 (584)
..+.+.|.+++.+. +++++.++.++++..+++.+. +...+|+ .++|+.||.|+|..|.+
T Consensus 132 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~ 197 (580)
T TIGR01176 132 FHMLHTLFQTSLTYPQIMRYDEWFVTDLLVDDGRVCGLVAIEMAEGRLVTILADAVVLATGGAGRV 197 (580)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCeEEEEEEeeCCEEEEEEEEEcCCCcEEEEecCEEEEcCCCCccc
Confidence 45778888888765 789999999999988766443 2233553 69999999999999865
No 121
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.39 E-value=4.8e-06 Score=88.98 Aligned_cols=63 Identities=17% Similarity=0.205 Sum_probs=51.9
Q ss_pred eeCHHHHHHHHHHHHHhCCC-EEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChHHH
Q 007945 201 GVSPAKLIEIVKKRFISLGG-VIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVV 264 (584)
Q Consensus 201 ~vd~~~L~~~L~~~a~~~G~-~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~v~ 264 (584)
.+++..+.+.|.+.+.+.|+ .+..++.+..+......+.|.+.+|+ +.|+.||-|.|.+|...
T Consensus 152 ~~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~v~t~~g~-i~a~~vv~a~G~~~~~l 215 (387)
T COG0665 152 HLDPRLLTRALAAAAEELGVVIIEGGTPVTSLERDGRVVGVETDGGT-IEADKVVLAAGAWAGEL 215 (387)
T ss_pred cCCHHHHHHHHHHHHHhcCCeEEEccceEEEEEecCcEEEEEeCCcc-EEeCEEEEcCchHHHHH
Confidence 48899999999999999995 66678999888764245677776676 99999999999998744
No 122
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.38 E-value=7.6e-06 Score=92.68 Aligned_cols=59 Identities=12% Similarity=0.179 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEEc---CCc--EEEccEEEEecCCChHH
Q 007945 205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLA---EGK--ILSSHLIIDAMGNFSPV 263 (584)
Q Consensus 205 ~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~-V~~~---~G~--~i~ArlVIdADG~~S~v 263 (584)
..+.+.|.+++.+.|++++.++.++++..+++.++ |.+. +++ .++|+-||-|+|..+.+
T Consensus 136 ~~i~~~L~~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~l 200 (566)
T PRK06452 136 MALLHTLFERTSGLNVDFYNEWFSLDLVTDNKKVVGIVAMQMKTLTPFFFKTKAVVLATGGMGML 200 (566)
T ss_pred HHHHHHHHHHHHhCCCEEEeCcEEEEEEEECCEEEEEEEEECCCCeEEEEEeCeEEECCCccccc
Confidence 35677888888888999999999999998766443 3222 333 68999999999988743
No 123
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.35 E-value=9.7e-06 Score=92.27 Aligned_cols=59 Identities=12% Similarity=0.200 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHhCCCEEEeCceEEEEEEeCC-eEE-EEE---cCCc--EEEccEEEEecCCChHH
Q 007945 205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AAV-LLL---AEGK--ILSSHLIIDAMGNFSPV 263 (584)
Q Consensus 205 ~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~-gv~-V~~---~~G~--~i~ArlVIdADG~~S~v 263 (584)
..+...|.+++.+.|++++.++.++++..+++ .+. |.+ .+|+ .+.|+-||.|+|..+.+
T Consensus 148 ~~l~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~ 213 (591)
T PRK07057 148 HALLHTLYQQNVAAKTQFFVEWMALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATGGAGRI 213 (591)
T ss_pred HHHHHHHHHHHHhcCCEEEeCcEEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCCCcccc
Confidence 35778888888888999999999999987643 232 222 2454 68999999999998754
No 124
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=98.34 E-value=7.5e-06 Score=93.74 Aligned_cols=59 Identities=14% Similarity=0.226 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHhCCCEEEeCceEEEEEEeC-CeEE-EEE---cCCc--EEEccEEEEecCCChHH
Q 007945 205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYE-NAAV-LLL---AEGK--ILSSHLIIDAMGNFSPV 263 (584)
Q Consensus 205 ~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~-~gv~-V~~---~~G~--~i~ArlVIdADG~~S~v 263 (584)
..+...|.+++.+.|++++.++.++++..++ +.+. |.+ .+|+ .|.|+-||.|+|..+.+
T Consensus 187 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~~ 252 (635)
T PLN00128 187 HAMLHTLYGQAMKHNTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGGYGRA 252 (635)
T ss_pred HHHHHHHHHHHHhCCCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCCccc
Confidence 4577888888888899999999999988763 4332 222 2454 68999999999998753
No 125
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.34 E-value=5.8e-06 Score=91.42 Aligned_cols=152 Identities=21% Similarity=0.284 Sum_probs=83.8
Q ss_pred ccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcc--cccCC--------HH-HH-HHHHHc-CCCcccccchhhh
Q 007945 111 FDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQ--EWNIS--------RK-EL-LELVES-GILVEDDIDEATA 176 (584)
Q Consensus 111 yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r--~w~Is--------~~-~l-~~L~~l-Gl~~~~ele~~i~ 176 (584)
+||||||| ++|+++|+.++++|.+|+||||.+..+... ..+|. .+ .+ +.+..- ++.++.-++..+.
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~~~~s~~a~ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~~~ 81 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIKKSNSYLAQAGIAFPILEGDSIRAHVLDTIRAGKYINDEEVVWNVIS 81 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCCCCCcHHHcCCcccccCCCCcHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 79999996 579999999999999999999986432110 01111 00 01 111111 1111110111000
Q ss_pred -----ccc-CCceeeecCCC---cccccccccc-eeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEEcCC
Q 007945 177 -----TKF-NPNRCGFEGKG---EIWVEDILNL-GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLAEG 245 (584)
Q Consensus 177 -----~~~-~~~~v~f~~~~---~l~~~~~l~~-~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~-V~~~~G 245 (584)
.+| ....+.|.... .-..+..+.. ......+.+.|.+++.+.|++++.. .++.+..+++.++ |.+ ++
T Consensus 82 ~~~~~i~~L~~~Gv~f~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~~g~v~Gv~~-~g 159 (466)
T PRK08401 82 KSSEAYDFLTSLGLEFEGNELEGGHSFPRVFTIKNETGKHIIKILYKHARELGVNFIRG-FAEELAIKNGKAYGVFL-DG 159 (466)
T ss_pred HHHHHHHHHHHcCCCcccCCCcCCccCCeEEECCCCchHHHHHHHHHHHHhcCCEEEEe-EeEEEEeeCCEEEEEEE-CC
Confidence 000 00012221100 0000111000 0123467888999998899998876 7888876665554 444 56
Q ss_pred cEEEccEEEEecCCChHHH
Q 007945 246 KILSSHLIIDAMGNFSPVV 264 (584)
Q Consensus 246 ~~i~ArlVIdADG~~S~v~ 264 (584)
+.++|+-||-|+|..|.+.
T Consensus 160 ~~i~a~~VVLATGG~~~~~ 178 (466)
T PRK08401 160 ELLKFDATVIATGGFSGLF 178 (466)
T ss_pred EEEEeCeEEECCCcCcCCC
Confidence 7899999999999999764
No 126
>PRK07233 hypothetical protein; Provisional
Probab=98.33 E-value=0.00087 Score=72.69 Aligned_cols=55 Identities=18% Similarity=0.174 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCC
Q 007945 206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF 260 (584)
Q Consensus 206 ~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~ 260 (584)
.+.+.|.+.+.+.|++|+.+++|++++.+++++++...++++++|+.||-|....
T Consensus 199 ~l~~~l~~~l~~~g~~v~~~~~V~~i~~~~~~~~~~~~~~~~~~ad~vI~a~p~~ 253 (434)
T PRK07233 199 TLIDALAEAIEARGGEIRLGTPVTSVVIDGGGVTGVEVDGEEEDFDAVISTAPPP 253 (434)
T ss_pred HHHHHHHHHHHhcCceEEeCCCeeEEEEcCCceEEEEeCCceEECCEEEECCCHH
Confidence 3567777888888999999999999998888776555677889999999998764
No 127
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.33 E-value=8.6e-06 Score=93.42 Aligned_cols=56 Identities=9% Similarity=0.201 Sum_probs=42.4
Q ss_pred HHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEEc---CCc--EEEccEEEEecCCChHH
Q 007945 208 IEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLA---EGK--ILSSHLIIDAMGNFSPV 263 (584)
Q Consensus 208 ~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~-V~~~---~G~--~i~ArlVIdADG~~S~v 263 (584)
.+.|.+++.+.|++++.++.++++..+++.++ |.+. +|+ .+.|+.||.|+|..+.+
T Consensus 173 ~~~L~~~~~~~gV~i~~~t~v~~Li~d~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~g~~ 234 (640)
T PRK07573 173 YQALSRQIAAGTVKMYTRTEMLDLVVVDGRARGIVARNLVTGEIERHTADAVVLATGGYGNV 234 (640)
T ss_pred HHHHHHHHHhcCCEEEeceEEEEEEEeCCEEEEEEEEECCCCcEEEEECCEEEECCCCcccC
Confidence 35666677788999999999999987766443 3332 453 69999999999997753
No 128
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.31 E-value=9.2e-06 Score=91.56 Aligned_cols=58 Identities=16% Similarity=0.113 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCe-EE-EE--E-cCCc--EEEccEEEEecCCChH
Q 007945 205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AV-LL--L-AEGK--ILSSHLIIDAMGNFSP 262 (584)
Q Consensus 205 ~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~g-v~-V~--~-~~G~--~i~ArlVIdADG~~S~ 262 (584)
..+...|.+++.+.|++++.++.++++..++++ ++ |. . .+|+ .++|+-||.|+|..+.
T Consensus 134 ~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~ 198 (543)
T PRK06263 134 HEMMMGLMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGGAGQ 198 (543)
T ss_pred HHHHHHHHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCCCC
Confidence 456778888888889999999999999887664 32 22 2 3454 6999999999999874
No 129
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.30 E-value=1.3e-05 Score=87.88 Aligned_cols=56 Identities=18% Similarity=0.212 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhCCCEEEeCceEEEEEEeCCe--EEEEEcCCcEEEccEEEEecCCChH
Q 007945 207 LIEIVKKRFISLGGVIFEGYSVSSICTYENA--AVLLLAEGKILSSHLIIDAMGNFSP 262 (584)
Q Consensus 207 L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~g--v~V~~~~G~~i~ArlVIdADG~~S~ 262 (584)
|-+.+.+.++..|++++.+++|.+|..++++ +.|++++|++++|+.||......+.
T Consensus 234 L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s~~p~ 291 (443)
T PTZ00363 234 LPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPSYFPD 291 (443)
T ss_pred HHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECcccccc
Confidence 4456666677789999999999999887654 4578889999999999986555543
No 130
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.28 E-value=1.4e-05 Score=90.91 Aligned_cols=59 Identities=20% Similarity=0.305 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHhCCCEEEeCceEEEEEEeC----CeE---EE-EEcCCc--EEEccEEEEecCCChHH
Q 007945 205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYE----NAA---VL-LLAEGK--ILSSHLIIDAMGNFSPV 263 (584)
Q Consensus 205 ~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~----~gv---~V-~~~~G~--~i~ArlVIdADG~~S~v 263 (584)
..+.+.|.+++.+.|++++.++.++++..++ +.+ ++ ...+|+ .++|+-||.|+|..+.+
T Consensus 140 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~ 208 (583)
T PRK08205 140 HMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSGRV 208 (583)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCccc
Confidence 4577888898988999999999999998765 322 22 223454 68999999999998754
No 131
>PRK08275 putative oxidoreductase; Provisional
Probab=98.28 E-value=1.5e-05 Score=90.12 Aligned_cols=59 Identities=8% Similarity=0.129 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHhCCCEEEeCceEEEEEEe-CCeE---EE-EEcCCc--EEEccEEEEecCCChHH
Q 007945 205 AKLIEIVKKRFISLGGVIFEGYSVSSICTY-ENAA---VL-LLAEGK--ILSSHLIIDAMGNFSPV 263 (584)
Q Consensus 205 ~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~-~~gv---~V-~~~~G~--~i~ArlVIdADG~~S~v 263 (584)
..+.+.|.+++.+.|++++.++.++++..+ ++.+ .+ ...+|+ .++|+.||.|+|..+.+
T Consensus 137 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~~ 202 (554)
T PRK08275 137 HDIKKVLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAGRL 202 (554)
T ss_pred HHHHHHHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCcccc
Confidence 357788888898899999999999999876 3322 22 123454 58999999999998754
No 132
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.26 E-value=6.7e-06 Score=90.40 Aligned_cols=137 Identities=20% Similarity=0.262 Sum_probs=72.7
Q ss_pred CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCccccc-CCHHHHHHHHHcCCCcccccchhhhcccCCceeeec
Q 007945 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWN-ISRKELLELVESGILVEDDIDEATATKFNPNRCGFE 187 (584)
Q Consensus 110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~-Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~ 187 (584)
+|||+|||| |+|.++|..+|++|++|+|+|+....|....++ +..+.+-.-. .+.. .++.. ..|. +...
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~GG~c~~~gciPsk~l~~~a--~~~~--~~~~~--~~~g---~~~~ 72 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEPRVGGTCVIRGCVPKKLMVYGS--TFGG--EFEDA--AGYG---WTVG 72 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCccCceeecCCcCchHHHHHHH--HHHH--HHhhh--HhcC---cCCC
Confidence 699999996 568888889999999999999976555322111 2222111000 0000 00000 0000 0000
Q ss_pred CCCcccccccccceeC--HHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCCh
Q 007945 188 GKGEIWVEDILNLGVS--PAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 261 (584)
Q Consensus 188 ~~~~l~~~~~l~~~vd--~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S 261 (584)
...+..+..... .+ -..+.+.+.+.+.+.|++++.+ ++..+ +.+.+.|. .+|++++++.||-|+|...
T Consensus 73 -~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~gV~~~~g-~~~~v--~~~~v~v~-~~g~~~~~d~lIiATGs~p 142 (446)
T TIGR01424 73 -KARFDWKKLLQK-KDDEIARLSGLYKRLLANAGVELLEG-RARLV--GPNTVEVL-QDGTTYTAKKILIAVGGRP 142 (446)
T ss_pred -CCCcCHHHHHHH-HHHHHHHHHHHHHHHHHhCCcEEEEE-EEEEe--cCCEEEEe-cCCeEEEcCEEEEecCCcC
Confidence 001111111000 00 1123445566677789988776 45444 33445554 3577899999999999764
No 133
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.25 E-value=6.3e-06 Score=91.26 Aligned_cols=141 Identities=18% Similarity=0.225 Sum_probs=74.4
Q ss_pred CCccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCccccc-CCHHHHHHHHHcCCCcccccchhhhcccCCceeee
Q 007945 109 GTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWN-ISRKELLELVESGILVEDDIDEATATKFNPNRCGF 186 (584)
Q Consensus 109 ~~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~-Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f 186 (584)
..|||||||| |+|+++|..|+++|++|+|||+....|....++ |..+.+-.... +.. .... ...+ .+..
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~~GG~c~~~gciPsk~l~~~a~--~~~--~~~~--~~~~---g~~~ 73 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKGKLGGTCLHKGCIPSKALLHSAE--VFQ--TAKK--ASPF---GISV 73 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEccCCCcceEcCCcCchHHHHHHHH--HHH--HHHH--HHhc---CccC
Confidence 3699999996 568888889999999999999986655432222 33222211000 000 0000 0000 0000
Q ss_pred cCCCcccccccccceeC--HHHHHHHHHHHHHhCCCEEEeCceEEEEEEe-----CCeEEEEEcCC--cEEEccEEEEec
Q 007945 187 EGKGEIWVEDILNLGVS--PAKLIEIVKKRFISLGGVIFEGYSVSSICTY-----ENAAVLLLAEG--KILSSHLIIDAM 257 (584)
Q Consensus 187 ~~~~~l~~~~~l~~~vd--~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~-----~~gv~V~~~~G--~~i~ArlVIdAD 257 (584)
. ...+..+..... .+ .+.+.+...+.+++.|++++.+. ++.++.+ ++.+.|.+.+| .++++|.||-|+
T Consensus 74 ~-~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~gv~~~~g~-a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViAT 150 (472)
T PRK05976 74 S-GPALDFAKVQER-KDGIVDRLTKGVAALLKKGKIDVFHGI-GRILGPSIFSPMPGTVSVETETGENEMIIPENLLIAT 150 (472)
T ss_pred C-CCccCHHHHHHH-HHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeC
Confidence 0 000110010000 00 01233334455566788988874 3444322 22677877676 479999999999
Q ss_pred CCCh
Q 007945 258 GNFS 261 (584)
Q Consensus 258 G~~S 261 (584)
|...
T Consensus 151 Gs~p 154 (472)
T PRK05976 151 GSRP 154 (472)
T ss_pred CCCC
Confidence 9875
No 134
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.25 E-value=2.1e-05 Score=90.04 Aligned_cols=36 Identities=33% Similarity=0.521 Sum_probs=31.8
Q ss_pred CccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG 145 (584)
Q Consensus 110 ~yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~ 145 (584)
+||||||||| +|+++|..+++.|.+|+||||.+..+
T Consensus 8 ~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~ 44 (626)
T PRK07803 8 SYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGK 44 (626)
T ss_pred eecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCC
Confidence 6899999965 79999999999999999999987653
No 135
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.25 E-value=8.2e-06 Score=89.98 Aligned_cols=138 Identities=25% Similarity=0.239 Sum_probs=72.6
Q ss_pred CCccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCccccc-CCHHHHHHHHHcCCCcccccchhh-hcccCCceee
Q 007945 109 GTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWN-ISRKELLELVESGILVEDDIDEAT-ATKFNPNRCG 185 (584)
Q Consensus 109 ~~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~-Is~~~l~~L~~lGl~~~~ele~~i-~~~~~~~~v~ 185 (584)
.+|||||||| |+|+++|..++++|++|+||||....|....++ +..+.+.... .+ .+... ...|. +.
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~~GG~c~~~gciP~k~l~~~~--~~-----~~~~~~~~~~g---~~ 72 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEKLGGTCLNRGCIPSKALLHAA--ER-----ADEARHSEDFG---IK 72 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccccccceeecccCCcHHHHHhh--hH-----HHHHHHHHhcC---cc
Confidence 3699999996 568888889999999999999987555322122 2222211100 00 00000 00010 00
Q ss_pred ecCCCcccccccccceeC--HHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcC-CcEEEccEEEEecCCCh
Q 007945 186 FEGKGEIWVEDILNLGVS--PAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE-GKILSSHLIIDAMGNFS 261 (584)
Q Consensus 186 f~~~~~l~~~~~l~~~vd--~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~-G~~i~ArlVIdADG~~S 261 (584)
.. ...+.......+ .+ .+.+...+...+.+.|++++.++. +. .++..++|...+ ++++++|.||-|+|...
T Consensus 73 ~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~gv~~~~g~~-~~--~~~~~~~v~~~~~~~~~~~d~lViAtGs~p 146 (462)
T PRK06416 73 AE-NVGIDFKKVQEW-KNGVVNRLTGGVEGLLKKNKVDIIRGEA-KL--VDPNTVRVMTEDGEQTYTAKNIILATGSRP 146 (462)
T ss_pred cC-CCccCHHHHHHH-HHHHHHHHHHHHHHHHHhCCCEEEEEEE-EE--ccCCEEEEecCCCcEEEEeCEEEEeCCCCC
Confidence 00 000000000000 00 011223355566678999887743 22 344556666433 46899999999999875
No 136
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.24 E-value=2.5e-05 Score=88.83 Aligned_cols=60 Identities=17% Similarity=0.216 Sum_probs=45.6
Q ss_pred CHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEE--cCCc-EEEc-cEEEEecCCChH
Q 007945 203 SPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLL--AEGK-ILSS-HLIIDAMGNFSP 262 (584)
Q Consensus 203 d~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~-V~~--~~G~-~i~A-rlVIdADG~~S~ 262 (584)
+...|...|.+.+++.|++++.+++|+++..+++.++ |.+ .++. +++| +.||-|+|..+.
T Consensus 215 ~g~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~~ 279 (581)
T PRK06134 215 NGNALVARLLKSAEDLGVRIWESAPARELLREDGRVAGAVVETPGGLQEIRARKGVVLAAGGFPH 279 (581)
T ss_pred CHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEEECCcEEEEEeCCEEEEcCCCccc
Confidence 3445667888999999999999999999987765443 333 2343 5899 889999998875
No 137
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.22 E-value=2.2e-05 Score=87.89 Aligned_cols=57 Identities=18% Similarity=0.222 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEEc--CCc--EEEccEEEEecCCChH
Q 007945 205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLA--EGK--ILSSHLIIDAMGNFSP 262 (584)
Q Consensus 205 ~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~-V~~~--~G~--~i~ArlVIdADG~~S~ 262 (584)
..+.+.|.+++. .|++++.++.++++..+++.+. |.+. +|+ .++|+.||.|+|..+.
T Consensus 130 ~~i~~~L~~~~~-~gV~i~~~~~v~~Li~~~g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG~~~ 191 (510)
T PRK08071 130 KNLLEHLLQELV-PHVTVVEQEMVIDLIIENGRCIGVLTKDSEGKLKRYYADYVVLASGGCGG 191 (510)
T ss_pred HHHHHHHHHHHh-cCCEEEECeEhhheeecCCEEEEEEEEECCCcEEEEEcCeEEEecCCCcc
Confidence 456777777775 6899999999999977665433 3332 343 6899999999999874
No 138
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.22 E-value=2e-05 Score=89.60 Aligned_cols=59 Identities=14% Similarity=0.239 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHhCCCEEEeCceEEEEEEeCC-eEE-EE---EcCCc--EEEccEEEEecCCChHH
Q 007945 205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AAV-LL---LAEGK--ILSSHLIIDAMGNFSPV 263 (584)
Q Consensus 205 ~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~-gv~-V~---~~~G~--~i~ArlVIdADG~~S~v 263 (584)
..+...|.+++.+.|++++.++.++++..+++ .++ |. ..+|+ .+.|+-||-|+|..+.+
T Consensus 143 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~ 208 (588)
T PRK08958 143 HALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGAGRI 208 (588)
T ss_pred HHHHHHHHHHhhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCcccc
Confidence 45778888888888999999999999987543 332 22 23454 68999999999998754
No 139
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.22 E-value=1.1e-05 Score=89.33 Aligned_cols=139 Identities=19% Similarity=0.145 Sum_probs=71.9
Q ss_pred CCccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC-CCCCccccc-CCHHHHHHHHHcCCCcccccchhhhcccCCceee
Q 007945 109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNT-LKGREQEWN-ISRKELLELVESGILVEDDIDEATATKFNPNRCG 185 (584)
Q Consensus 109 ~~yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~-~~~~~r~w~-Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~ 185 (584)
.+||||||||| .|..+|..+|++|++|+|||+.+ ..+....++ +....+-.. ..+... ++.. ..+ .+.
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n~gciP~K~l~~~--a~~~~~--~~~~--~~~---g~~ 73 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNVGCIPSKALLHV--AKVIEE--AKAL--AEH---GIV 73 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccCCCcccHHHHHHH--HHHHHH--Hhhh--hhc---Ccc
Confidence 47999999965 68888889999999999999874 333211111 322221110 000000 0000 000 011
Q ss_pred ecCCCcccccccccceeC--HHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCC--cEEEccEEEEecCCCh
Q 007945 186 FEGKGEIWVEDILNLGVS--PAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG--KILSSHLIIDAMGNFS 261 (584)
Q Consensus 186 f~~~~~l~~~~~l~~~vd--~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G--~~i~ArlVIdADG~~S 261 (584)
+. ...+..+..... .+ -.++.......+++.|++++.++.. ..+++.+.|+..+| .++++|.||-|+|...
T Consensus 74 ~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~gV~~~~g~a~---~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p 148 (471)
T PRK06467 74 FG-EPKIDIDKMRAR-KEKVVKQLTGGLAGMAKGRKVTVVNGLGK---FTGGNTLEVTGEDGKTTVIEFDNAIIAAGSRP 148 (471)
T ss_pred cC-CCCcCHHHHHHH-HHHHHHHHHHHHHHHHHhCCCEEEEEEEE---EccCCEEEEecCCCceEEEEcCEEEEeCCCCC
Confidence 10 000100010000 00 0112233344566779999877532 23455677776666 4799999999999864
No 140
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.22 E-value=1e-05 Score=89.25 Aligned_cols=139 Identities=22% Similarity=0.264 Sum_probs=73.2
Q ss_pred CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCC-CCCCccccc-CCHHHHHHHHHcCCCcccccchhhhcccCCceeee
Q 007945 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNT-LKGREQEWN-ISRKELLELVESGILVEDDIDEATATKFNPNRCGF 186 (584)
Q Consensus 110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~-~~~~~r~w~-Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f 186 (584)
+|||+|||| ++|+++|..|+++|++|+||||+. ..|....++ +....+...... .. ..+. ...| ..+
T Consensus 5 ~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~--~~--~~~~--~~~~----~~~ 74 (461)
T PRK05249 5 DYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHTGTIPSKALREAVLR--LI--GFNQ--NPLY----SSY 74 (461)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccccCCCCHHHHHHHHHH--HH--HHhh--hhhh----ccc
Confidence 699999996 569999999999999999999964 444321111 332222110000 00 0000 0000 000
Q ss_pred cCCCcccccccccce-eCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCc--EEEccEEEEecCCCh
Q 007945 187 EGKGEIWVEDILNLG-VSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGK--ILSSHLIIDAMGNFS 261 (584)
Q Consensus 187 ~~~~~l~~~~~l~~~-vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~--~i~ArlVIdADG~~S 261 (584)
.....+..+..+... --.+.+.+.+.+.+.+.|++++.++ +.. .+.+.++|...+|+ ++++|.||-|+|...
T Consensus 75 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~--~~~~~~~v~~~~g~~~~~~~d~lviATGs~p 149 (461)
T PRK05249 75 RVKLRITFADLLARADHVINKQVEVRRGQYERNRVDLIQGR-ARF--VDPHTVEVECPDGEVETLTADKIVIATGSRP 149 (461)
T ss_pred CCcCccCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE-EEE--ecCCEEEEEeCCCceEEEEcCEEEEcCCCCC
Confidence 000000000100000 0001123345566677889888774 222 34556777776664 799999999999764
No 141
>PTZ00058 glutathione reductase; Provisional
Probab=98.22 E-value=4.2e-06 Score=94.33 Aligned_cols=38 Identities=34% Similarity=0.488 Sum_probs=32.5
Q ss_pred CCccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCC
Q 007945 109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGR 146 (584)
Q Consensus 109 ~~yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~ 146 (584)
.+||||||||| +|.++|..+++.|.+|+||||...+|.
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~~~GGt 85 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAARNKAKVALVEKDYLGGT 85 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCeEEEEeccccccc
Confidence 47999999965 688888899999999999999866664
No 142
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=98.21 E-value=3.2e-05 Score=87.38 Aligned_cols=34 Identities=32% Similarity=0.470 Sum_probs=30.9
Q ss_pred CCccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945 109 GTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNT 142 (584)
Q Consensus 109 ~~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~ 142 (584)
.++||||||+ ++|+++|+.++++|.+|+||||.+
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~ 37 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQEN 37 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 3799999996 579999999999999999999998
No 143
>PLN02815 L-aspartate oxidase
Probab=98.21 E-value=1.8e-05 Score=89.85 Aligned_cols=159 Identities=16% Similarity=0.241 Sum_probs=84.6
Q ss_pred CCCCCCCccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccc---cC--------CHHH-HHHHHHcC--CCcc
Q 007945 104 SDKAVGTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEW---NI--------SRKE-LLELVESG--ILVE 168 (584)
Q Consensus 104 ~~~~~~~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w---~I--------s~~~-l~~L~~lG--l~~~ 168 (584)
.++...++||||||| ++|+++|+.+++.| +|+||||.+..+....| +| +.+. ++.....| +.++
T Consensus 23 ~~~~~~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg~s~~a~Ggi~a~~~~~Ds~e~~~~d~~~~g~~~~d~ 101 (594)
T PLN02815 23 DDESTKYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHESNTNYAQGGVSAVLDPSDSVESHMRDTIVAGAFLCDE 101 (594)
T ss_pred ccCcccccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCCcHHHhhcccccCCCCCCCHHHHHHHHHHhccCCCcH
Confidence 444555799999996 57999999999999 99999998865432111 11 1111 11111111 1111
Q ss_pred cccchhhh-----ccc-CCceeeecCC--Ccccc--c------ccc-cceeCHHHHHHHHHHHHHhC-CCEEEeCceEEE
Q 007945 169 DDIDEATA-----TKF-NPNRCGFEGK--GEIWV--E------DIL-NLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSS 230 (584)
Q Consensus 169 ~ele~~i~-----~~~-~~~~v~f~~~--~~l~~--~------~~l-~~~vd~~~L~~~L~~~a~~~-G~~i~~~t~v~~ 230 (584)
.-++.++. .+| ....+.|... ..+.. . ..+ .....-..+...|.+++.+. |++++.++.+++
T Consensus 102 ~lv~~~~~~s~e~i~~L~~~Gv~F~~~~~g~~~~~~~gg~s~~R~~~~~d~tG~~i~~~L~~~~~~~~~i~i~~~~~~~~ 181 (594)
T PLN02815 102 ETVRVVCTEGPERVKELIAMGASFDHGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVKNDPNITFFEHHFAID 181 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCeeeecCCCCccccCCCCCccCceeecCCCCHHHHHHHHHHHHHhcCCCEEEeceEhhe
Confidence 11111000 000 0001222110 00000 0 000 00012345777888888765 889999999999
Q ss_pred EEEeCCe----EE-EEE---cCCc--EEEccEEEEecCCChHH
Q 007945 231 ICTYENA----AV-LLL---AEGK--ILSSHLIIDAMGNFSPV 263 (584)
Q Consensus 231 v~~~~~g----v~-V~~---~~G~--~i~ArlVIdADG~~S~v 263 (584)
+..++++ ++ |.+ .+|+ .+.|+-||-|+|..+.+
T Consensus 182 Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~~ 224 (594)
T PLN02815 182 LLTSQDGGSIVCHGADVLDTRTGEVVRFISKVTLLASGGAGHI 224 (594)
T ss_pred eeeecCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCCcceee
Confidence 9875432 22 222 2454 58999999999988653
No 144
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.19 E-value=2.5e-05 Score=88.64 Aligned_cols=57 Identities=23% Similarity=0.279 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEEc--CCc-EEEcc-EEEEecCCChH
Q 007945 206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLA--EGK-ILSSH-LIIDAMGNFSP 262 (584)
Q Consensus 206 ~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~-V~~~--~G~-~i~Ar-lVIdADG~~S~ 262 (584)
.+.+.|.+++++.|++++.+++|+++..+++.++ |.+. ++. ++.|+ -||-|+|..+.
T Consensus 215 ~l~~~L~~~~~~~Gv~i~~~~~v~~l~~~~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~~ 276 (574)
T PRK12842 215 ALAARLAKSALDLGIPILTGTPARELLTEGGRVVGARVIDAGGERRITARRGVVLACGGFSH 276 (574)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEeeCCEEEEEEEEcCCceEEEEeCCEEEEcCCCccc
Confidence 3556678888889999999999999988776443 3332 343 57884 68889998874
No 145
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=98.18 E-value=0.0012 Score=72.71 Aligned_cols=38 Identities=11% Similarity=0.177 Sum_probs=34.3
Q ss_pred CEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEec
Q 007945 220 GVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAM 257 (584)
Q Consensus 220 ~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdAD 257 (584)
++|..+++|++|+.+++++.|++.+|+++.||.||-|.
T Consensus 239 ~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~a~ 276 (463)
T PRK12416 239 TVVKKGAVTTAVSKQGDRYEISFANHESIQADYVVLAA 276 (463)
T ss_pred ccEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEECC
Confidence 47999999999999988998888888889999999887
No 146
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.18 E-value=1.3e-05 Score=88.31 Aligned_cols=137 Identities=17% Similarity=0.181 Sum_probs=70.7
Q ss_pred CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCccccc-CCHHHHHHHHHcCCCcccccchhhhcccCCceeeec
Q 007945 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWN-ISRKELLELVESGILVEDDIDEATATKFNPNRCGFE 187 (584)
Q Consensus 110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~-Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~ 187 (584)
+|||+|||| |+|.++|..++++|++|+||||....|....++ |....+..-.+ +.. .... ...|. +...
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~GG~c~~~gciPsk~l~~~a~--~~~--~~~~--~~~~g---~~~~ 72 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAKKLGGTCVNVGCVPKKVMWYASD--LAE--RMHD--AADYG---FYQN 72 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEecccccccceeccCcCccHHHHHHHH--HHH--HHhH--HhhcC---cccC
Confidence 599999996 568888889999999999999987666322121 22111100000 000 0000 00000 0000
Q ss_pred CCCcccccccccce-eCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCCh
Q 007945 188 GKGEIWVEDILNLG-VSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 261 (584)
Q Consensus 188 ~~~~l~~~~~l~~~-vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S 261 (584)
....+..+...... ---+.+.+.+...+.+.|++++.++... .++.. |.+ ++++++++.||-|+|...
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~---~~~~~--v~v-~~~~~~~d~vIiAtGs~p 141 (450)
T TIGR01421 73 LENTFNWPELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARF---TKDGT--VEV-NGRDYTAPHILIATGGKP 141 (450)
T ss_pred CcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEE---ccCCE--EEE-CCEEEEeCEEEEecCCCC
Confidence 00000000000000 0001233445566777899999887542 22333 333 567899999999999765
No 147
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.17 E-value=2.6e-05 Score=89.74 Aligned_cols=58 Identities=16% Similarity=0.227 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHhCCCEEEeCceEEEEEEeCCe---EEEEE-cCCc--EEEccEEEEecCCChHH
Q 007945 206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENA---AVLLL-AEGK--ILSSHLIIDAMGNFSPV 263 (584)
Q Consensus 206 ~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~g---v~V~~-~~G~--~i~ArlVIdADG~~S~v 263 (584)
.+...|.+++.+.|++++.++.++++..+++. +++.. .+|+ .+.|+-||-|+|..+.+
T Consensus 159 ~l~~~L~~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~g~~ 222 (657)
T PRK08626 159 TMLYAVDNEAIKLGVPVHDRKEAIALIHDGKRCYGAVVRCLITGELRAYVAKATLIATGGYGRI 222 (657)
T ss_pred HHHHHHHHHHHhCCCEEEeeEEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCCcccCC
Confidence 45667888888899999999999999877654 33432 3554 57899999999987654
No 148
>PRK10262 thioredoxin reductase; Provisional
Probab=98.17 E-value=2.9e-05 Score=81.35 Aligned_cols=111 Identities=12% Similarity=0.121 Sum_probs=73.3
Q ss_pred CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecC
Q 007945 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG 188 (584)
Q Consensus 110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~ 188 (584)
.+||+|||| ++|+++|..|+++|++|++||+....+... .+ . + ...| .+
T Consensus 6 ~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~~gg~~~---~~-------------~--~-----~~~~-------~~ 55 (321)
T PRK10262 6 HSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLT---TT-------------T--E-----VENW-------PG 55 (321)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeecCCCcee---cC-------------c--e-----ECCC-------CC
Confidence 689999996 579999999999999999999654322100 00 0 0 0000 00
Q ss_pred CCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCCh
Q 007945 189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 261 (584)
Q Consensus 189 ~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S 261 (584)
. ...++...+.+.+.+.+...+.+++.+ ++++++..++.++++.. ..+++++.||-|+|...
T Consensus 56 ~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~v~~~~~~~~v~~~-~~~~~~d~vilAtG~~~ 117 (321)
T PRK10262 56 D---------PNDLTGPLLMERMHEHATKFETEIIFD-HINKVDLQNRPFRLTGD-SGEYTCDALIIATGASA 117 (321)
T ss_pred C---------CCCCCHHHHHHHHHHHHHHCCCEEEee-EEEEEEecCCeEEEEec-CCEEEECEEEECCCCCC
Confidence 0 001234456677777777777776665 57778777777777653 34799999999999975
No 149
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.16 E-value=5.7e-05 Score=83.20 Aligned_cols=58 Identities=17% Similarity=0.229 Sum_probs=48.3
Q ss_pred HHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCC--cEEEccEEEEecCCChHHH
Q 007945 207 LIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG--KILSSHLIIDAMGNFSPVV 264 (584)
Q Consensus 207 L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G--~~i~ArlVIdADG~~S~v~ 264 (584)
+.+.+.+.+++.|++++.++++++++.+++++.+.+.+| +++.++.||-|.|..+...
T Consensus 213 ~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~~~ 272 (461)
T TIGR01350 213 VSKVVAKALKKKGVKILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGRKPNTE 272 (461)
T ss_pred HHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCCcccCC
Confidence 455667778888999999999999988777887777666 5799999999999987654
No 150
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.16 E-value=2.9e-05 Score=87.87 Aligned_cols=58 Identities=14% Similarity=0.181 Sum_probs=41.6
Q ss_pred HHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEE-cCCc--EEEc-cEEEEecCCChHHH
Q 007945 207 LIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLL-AEGK--ILSS-HLIIDAMGNFSPVV 264 (584)
Q Consensus 207 L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~-V~~-~~G~--~i~A-rlVIdADG~~S~v~ 264 (584)
|...|.+++++.|++++.+++++++..+++.|+ |.. .+|+ .+.| +-||-|+|..+...
T Consensus 219 l~~~L~~~~~~~Gv~i~~~t~v~~Li~~~g~V~GV~~~~~g~~~~i~a~kaVILAtGGf~~n~ 281 (564)
T PRK12845 219 LAAGLFAGVLRAGIPIWTETSLVRLTDDGGRVTGAVVDHRGREVTVTARRGVVLAAGGFDHDM 281 (564)
T ss_pred HHHHHHHHHHHCCCEEEecCEeeEEEecCCEEEEEEEEECCcEEEEEcCCEEEEecCCccccH
Confidence 455677888889999999999999986554332 222 2343 4667 57888999888654
No 151
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.14 E-value=8.7e-06 Score=88.03 Aligned_cols=113 Identities=19% Similarity=0.079 Sum_probs=71.2
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCc---------ccccCCHHHHHHHHHcCCCcccccchhhhcccC
Q 007945 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGRE---------QEWNISRKELLELVESGILVEDDIDEATATKFN 180 (584)
Q Consensus 111 yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~---------r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~ 180 (584)
-||+||||| +|+.+|+.||++|++|+|+|+++....+ +.-+.|..+...+...|+|.+ +++.. .
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~s~a~~~~~~~ervca~Slgs~~ll~a~Gll~~-em~~l-----g 76 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKKTPAHHTDGFAELVCSNSFRSDSLTNAVGLLKE-EMRRL-----G 76 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccCcccccCccccccccchhhhhhhHHhcCCchHH-HHHHh-----c
Confidence 599999975 7999999999999999999987765321 112344445556667777752 22111 0
Q ss_pred CceeeecCCCcccccccccceeCHHHHHHHHHHHHHhC-CCEEEeCceEEEEE
Q 007945 181 PNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSIC 232 (584)
Q Consensus 181 ~~~v~f~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~-G~~i~~~t~v~~v~ 232 (584)
. +.+........|..-...+|+..+.+.|.+++++. +++++ ..+|+++.
T Consensus 77 s--l~~~aad~~~vPA~gaLvvdR~~~~~~L~~~L~~~pnI~l~-~~eV~~l~ 126 (436)
T PRK05335 77 S--LIMEAADAHRVPAGGALAVDREGFSEYVTEALENHPLITVI-REEVTEIP 126 (436)
T ss_pred c--hheecccccCCCCccceecCHHHHHHHHHHHHHcCCCcEEE-ccchhccc
Confidence 0 11111111112222124689988999999999876 46776 56787774
No 152
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.12 E-value=6e-05 Score=85.82 Aligned_cols=60 Identities=12% Similarity=0.118 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHhCC----CEEEeCceEEEEEEeCCe-E---EEEEc-CCc--EEEccEEEEecCCChHH
Q 007945 204 PAKLIEIVKKRFISLG----GVIFEGYSVSSICTYENA-A---VLLLA-EGK--ILSSHLIIDAMGNFSPV 263 (584)
Q Consensus 204 ~~~L~~~L~~~a~~~G----~~i~~~t~v~~v~~~~~g-v---~V~~~-~G~--~i~ArlVIdADG~~S~v 263 (584)
-..+...|.+++.+.+ ++++.++.++++..++++ + .+... +++ .+.|+-||-|+|..+.+
T Consensus 132 G~~i~~~L~~~~~~~~~~~~i~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~ 202 (589)
T PRK08641 132 GQQLLYALDEQVRRYEVAGLVTKYEGWEFLGAVLDDEGVCRGIVAQDLFTMEIESFPADAVIMATGGPGII 202 (589)
T ss_pred HHHHHHHHHHHHHhhhccCCcEEEeeEEEEEEEECCCCEEEEEEEEECCCCcEEEEECCEEEECCCCCcCC
Confidence 3456777777776543 679999999999875443 2 22221 343 58999999999998753
No 153
>PRK06370 mercuric reductase; Validated
Probab=98.11 E-value=1.5e-05 Score=87.92 Aligned_cols=136 Identities=20% Similarity=0.247 Sum_probs=71.2
Q ss_pred CCccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCccccc-CCHHHHHHHHHcCCCcccccchhh-hcccCCceee
Q 007945 109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWN-ISRKELLELVESGILVEDDIDEAT-ATKFNPNRCG 185 (584)
Q Consensus 109 ~~yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~-Is~~~l~~L~~lGl~~~~ele~~i-~~~~~~~~v~ 185 (584)
.+||||||||| .|.++|..++++|++|+||||....|....++ |..+.+....+. ..... ...+ + +.
T Consensus 4 ~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~~GG~c~~~gciPsk~l~~~a~~-------~~~~~~~~~~--g-~~ 73 (463)
T PRK06370 4 QRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGLLGGTCVNTGCVPTKTLIASARA-------AHLARRAAEY--G-VS 73 (463)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEecCccCCceeccccCcHHHHHHHHHH-------HHHHHHHHhc--C-cc
Confidence 36999999965 68888889999999999999987666432222 332222110000 00000 0000 0 00
Q ss_pred ecCCCcccccccccc---eeCHHHHHHHHHHHHHhC-CCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCCh
Q 007945 186 FEGKGEIWVEDILNL---GVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 261 (584)
Q Consensus 186 f~~~~~l~~~~~l~~---~vd~~~L~~~L~~~a~~~-G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S 261 (584)
......+..+..... .++ .+...+.+.+++. |++++.++.+. .++.. |++ +++++++|.||-|+|...
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~gv~v~~g~~~~---~~~~~--v~v-~~~~~~~d~lViATGs~p 145 (463)
T PRK06370 74 VGGPVSVDFKAVMARKRRIRA--RSRHGSEQWLRGLEGVDVFRGHARF---ESPNT--VRV-GGETLRAKRIFINTGARA 145 (463)
T ss_pred cCccCccCHHHHHHHHHHHHH--HHHHhHHHHHhcCCCcEEEEEEEEE---ccCCE--EEE-CcEEEEeCEEEEcCCCCC
Confidence 000000000000000 011 1223445566666 89988877542 23333 333 466899999999999865
Q ss_pred H
Q 007945 262 P 262 (584)
Q Consensus 262 ~ 262 (584)
.
T Consensus 146 ~ 146 (463)
T PRK06370 146 A 146 (463)
T ss_pred C
Confidence 3
No 154
>PRK06116 glutathione reductase; Validated
Probab=98.10 E-value=1.5e-05 Score=87.68 Aligned_cols=36 Identities=39% Similarity=0.642 Sum_probs=31.6
Q ss_pred CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG 145 (584)
Q Consensus 110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~ 145 (584)
+|||+|||| |+|+++|..|+++|++|+|||+....|
T Consensus 4 ~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~~~GG 40 (450)
T PRK06116 4 DYDLIVIGGGSGGIASANRAAMYGAKVALIEAKRLGG 40 (450)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccchhh
Confidence 699999996 568998999999999999999976555
No 155
>PLN02507 glutathione reductase
Probab=98.09 E-value=3.3e-05 Score=86.20 Aligned_cols=51 Identities=20% Similarity=0.214 Sum_probs=35.9
Q ss_pred HHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCc--EEEccEEEEecCCCh
Q 007945 208 IEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGK--ILSSHLIIDAMGNFS 261 (584)
Q Consensus 208 ~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~--~i~ArlVIdADG~~S 261 (584)
...+.+.+.+.|++++.+ ++.. .+++.+.|++.+|+ ++++|.||-|+|...
T Consensus 127 ~~~~~~~l~~~gV~~i~g-~a~~--vd~~~v~V~~~~g~~~~~~~d~LIIATGs~p 179 (499)
T PLN02507 127 NGIYKRLLANAGVKLYEG-EGKI--VGPNEVEVTQLDGTKLRYTAKHILIATGSRA 179 (499)
T ss_pred HHHHHHHHHhCCcEEEEE-EEEE--ecCCEEEEEeCCCcEEEEEcCEEEEecCCCC
Confidence 334445566678888776 3333 34567888877775 599999999999865
No 156
>PRK12839 hypothetical protein; Provisional
Probab=98.09 E-value=6.2e-05 Score=85.38 Aligned_cols=60 Identities=17% Similarity=0.144 Sum_probs=43.0
Q ss_pred CHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeC-Ce---EEEEEcCCc-EEE-ccEEEEecCCChH
Q 007945 203 SPAKLIEIVKKRFISLGGVIFEGYSVSSICTYE-NA---AVLLLAEGK-ILS-SHLIIDAMGNFSP 262 (584)
Q Consensus 203 d~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~-~g---v~V~~~~G~-~i~-ArlVIdADG~~S~ 262 (584)
+...|...|.+++.+.|++++.++.++++..++ +. |++...+++ ++. ++-||-|+|..+.
T Consensus 212 ~g~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~~~g~V~GV~~~~~~g~~~i~aak~VVLAtGGf~~ 277 (572)
T PRK12839 212 NGTALTGRLLRSADDLGVDLRVSTSATSLTTDKNGRVTGVRVQGPDGAVTVEATRGVVLATGGFPN 277 (572)
T ss_pred cHHHHHHHHHHHHHHCCCEEEcCCEEEEEEECCCCcEEEEEEEeCCCcEEEEeCCEEEEcCCCccc
Confidence 445667788899999999999999999997754 33 333333444 344 4788888887775
No 157
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.09 E-value=3.6e-05 Score=86.21 Aligned_cols=36 Identities=36% Similarity=0.421 Sum_probs=31.8
Q ss_pred CccEEEEcchHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945 110 TFDVIVCGGTLGIFIATALSFKGLRVAIVERNTLKG 145 (584)
Q Consensus 110 ~yDVVIVGGg~Gl~~Aa~LAr~GlrVlLIEr~~~~~ 145 (584)
++||||||+|+|+++|+.+|+.|++|+||||.+..+
T Consensus 7 ~~DVvVVG~GaGl~aA~~aa~~G~~V~vlEk~~~~G 42 (513)
T PRK12837 7 EVDVLVAGSGGGVAGAYTAAREGLSVALVEATDKFG 42 (513)
T ss_pred ccCEEEECchHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence 799999994488889999999999999999987643
No 158
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.08 E-value=4.8e-05 Score=86.03 Aligned_cols=57 Identities=14% Similarity=0.213 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEEc-CCc--EEEcc-EEEEecCCChH
Q 007945 206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLA-EGK--ILSSH-LIIDAMGNFSP 262 (584)
Q Consensus 206 ~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~-V~~~-~G~--~i~Ar-lVIdADG~~S~ 262 (584)
.+...|.+.+++.|++++.+++++++..+++.|+ |.+. +++ +|+|+ -||-|+|..+.
T Consensus 209 ~~~~~L~~~~~~~gv~v~~~t~v~~l~~~~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~~ 270 (557)
T PRK07843 209 ALAAGLRIGLQRAGVPVLLNTPLTDLYVEDGRVTGVHAAESGEPQLIRARRGVILASGGFEH 270 (557)
T ss_pred HHHHHHHHHHHcCCCEEEeCCEEEEEEEeCCEEEEEEEEeCCcEEEEEeceeEEEccCCcCc
Confidence 3556777788888999999999999988766543 3332 343 58896 47777776655
No 159
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=98.07 E-value=0.0027 Score=69.36 Aligned_cols=39 Identities=21% Similarity=0.313 Sum_probs=35.0
Q ss_pred EEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCC
Q 007945 221 VIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGN 259 (584)
Q Consensus 221 ~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~ 259 (584)
+|+.+++|++|..++++++|.+.+|+++.||.||-|.-.
T Consensus 235 ~i~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~vI~a~p~ 273 (451)
T PRK11883 235 TIHKGTPVTKIDKSGDGYEIVLSNGGEIEADAVIVAVPH 273 (451)
T ss_pred eEEeCCEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCH
Confidence 799999999999988888888888989999999988654
No 160
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.05 E-value=5.2e-05 Score=85.65 Aligned_cols=57 Identities=14% Similarity=0.118 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHhC-CCEEEeCceEEEEEEeC--CeEE-EE-EcCCc--EEEccEEEEecCCCh
Q 007945 205 AKLIEIVKKRFISL-GGVIFEGYSVSSICTYE--NAAV-LL-LAEGK--ILSSHLIIDAMGNFS 261 (584)
Q Consensus 205 ~~L~~~L~~~a~~~-G~~i~~~t~v~~v~~~~--~gv~-V~-~~~G~--~i~ArlVIdADG~~S 261 (584)
..+...|.+++.+. |++++.++.++++..++ +.++ |. ..+|+ .+.|+-||-|+|..+
T Consensus 134 ~~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~~g~~~~i~AkaVILATGG~~ 197 (553)
T PRK07395 134 RAIVTTLTEQVLQRPNIEIISQALALSLWLEPETGRCQGISLLYQGQITWLRAGAVILATGGGG 197 (553)
T ss_pred HHHHHHHHHHHhhcCCcEEEECcChhhheecCCCCEEEEEEEEECCeEEEEEcCEEEEcCCCCc
Confidence 35667788887654 89999999999998764 3222 22 23454 489999999999864
No 161
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.04 E-value=5.7e-05 Score=85.89 Aligned_cols=37 Identities=30% Similarity=0.431 Sum_probs=32.3
Q ss_pred CCccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945 109 GTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG 145 (584)
Q Consensus 109 ~~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~ 145 (584)
.++||||||+ ++|+++|..++++|.+|+||||.+..+
T Consensus 10 ~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~g 47 (584)
T PRK12835 10 REVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFG 47 (584)
T ss_pred CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCC
Confidence 4699999996 579999999999999999999998643
No 162
>PRK09077 L-aspartate oxidase; Provisional
Probab=98.03 E-value=0.00011 Score=82.89 Aligned_cols=60 Identities=13% Similarity=0.167 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHhC-CCEEEeCceEEEEEEeC------CeEE-EEE---cCCc--EEEccEEEEecCCChHHH
Q 007945 205 AKLIEIVKKRFISL-GGVIFEGYSVSSICTYE------NAAV-LLL---AEGK--ILSSHLIIDAMGNFSPVV 264 (584)
Q Consensus 205 ~~L~~~L~~~a~~~-G~~i~~~t~v~~v~~~~------~gv~-V~~---~~G~--~i~ArlVIdADG~~S~v~ 264 (584)
..+...|.+++.+. |++++.++.++++..++ +.++ |.+ .+|+ .|.|+.||.|+|..+.+.
T Consensus 138 ~~i~~~L~~~~~~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~~~~ 210 (536)
T PRK09077 138 KAVQTTLVERARNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRAKFVVLATGGASKVY 210 (536)
T ss_pred HHHHHHHHHHHHhCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEecCeEEECCCCCCCCC
Confidence 35677888888765 78999999999997653 3332 322 2344 599999999999988543
No 163
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.03 E-value=2.8e-05 Score=85.40 Aligned_cols=129 Identities=23% Similarity=0.309 Sum_probs=76.4
Q ss_pred CCccEEEEcch-HHHHHHHHHHhCCCe-EEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeee
Q 007945 109 GTFDVIVCGGT-LGIFIATALSFKGLR-VAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF 186 (584)
Q Consensus 109 ~~yDVVIVGGg-~Gl~~Aa~LAr~Glr-VlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f 186 (584)
..+||+||||| .|+++|..|.++|.. ++++||+..++.. |...+ . -++. +....+ ...|
T Consensus 7 ~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~--W~~~r-----y--~~l~-------~~~p~~---~~~~ 67 (443)
T COG2072 7 THTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGT--WRYNR-----Y--PGLR-------LDSPKW---LLGF 67 (443)
T ss_pred CcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCc--chhcc-----C--CceE-------ECCchh---eecc
Confidence 47999999965 799999999999999 9999999865522 32110 0 0000 000000 0111
Q ss_pred cCCCcc-cccccccceeCHHHHHHHHHHHHHhCCC--EEEeCceEEEEEEeC--CeEEEEEcCCcE--EEccEEEEecCC
Q 007945 187 EGKGEI-WVEDILNLGVSPAKLIEIVKKRFISLGG--VIFEGYSVSSICTYE--NAAVLLLAEGKI--LSSHLIIDAMGN 259 (584)
Q Consensus 187 ~~~~~l-~~~~~l~~~vd~~~L~~~L~~~a~~~G~--~i~~~t~v~~v~~~~--~gv~V~~~~G~~--i~ArlVIdADG~ 259 (584)
.. .+. +.+.... . ..+...+...+.+.+. .+...+.|..+..++ +.++|++++|.+ ++||.||-|+|+
T Consensus 68 ~~-~p~~~~~~~~~--~--~~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~ 142 (443)
T COG2072 68 PF-LPFRWDEAFAP--F--AEIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGH 142 (443)
T ss_pred CC-CccCCcccCCC--c--ccHHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecC
Confidence 11 000 0000000 1 1245666667776665 555556665565544 478999987765 569999999999
Q ss_pred Ch
Q 007945 260 FS 261 (584)
Q Consensus 260 ~S 261 (584)
.|
T Consensus 143 ~~ 144 (443)
T COG2072 143 LS 144 (443)
T ss_pred CC
Confidence 65
No 164
>PRK14694 putative mercuric reductase; Provisional
Probab=98.02 E-value=3.8e-05 Score=84.99 Aligned_cols=37 Identities=27% Similarity=0.460 Sum_probs=32.1
Q ss_pred CCccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945 109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG 145 (584)
Q Consensus 109 ~~yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~ 145 (584)
.+||||||||| +|+++|..|++.|++|+|||+....|
T Consensus 5 ~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~~GG 42 (468)
T PRK14694 5 NNLHIAVIGSGGSAMAAALKATERGARVTLIERGTIGG 42 (468)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcccccc
Confidence 37999999965 68888889999999999999986555
No 165
>PRK09897 hypothetical protein; Provisional
Probab=98.02 E-value=5.5e-05 Score=84.73 Aligned_cols=146 Identities=12% Similarity=0.098 Sum_probs=80.0
Q ss_pred ccEEEEcch-HHHHHHHHHHhC--CCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCce-ee-
Q 007945 111 FDVIVCGGT-LGIFIATALSFK--GLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNR-CG- 185 (584)
Q Consensus 111 yDVVIVGGg-~Gl~~Aa~LAr~--GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~-v~- 185 (584)
.+|+||||| .|+++|..|++. .++|.|+|++..+|....|......-..+....-.+...... .-.+|.... ..
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~-~f~~Wl~~~~~~~ 80 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYC-TYLEWLQKQEDSH 80 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChH-HHHHHhhhhhHHH
Confidence 589999965 699999999865 469999999877665444433110000111100000000000 000110000 00
Q ss_pred ec--C------CCcccccccccceeCHHHHH---HHHHHHHHhCC--CEEEeCceEEEEEEeCCeEEEEEcC-CcEEEcc
Q 007945 186 FE--G------KGEIWVEDILNLGVSPAKLI---EIVKKRFISLG--GVIFEGYSVSSICTYENAAVLLLAE-GKILSSH 251 (584)
Q Consensus 186 f~--~------~~~l~~~~~l~~~vd~~~L~---~~L~~~a~~~G--~~i~~~t~v~~v~~~~~gv~V~~~~-G~~i~Ar 251 (584)
+. + ...-+.| ..+-...|. +.+.+.+.+.| +.++..++|+++..++++++|++.+ +..+.|+
T Consensus 81 ~~~~g~~~~~l~~~~f~P----R~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD 156 (534)
T PRK09897 81 LQRYGVKKETLHDRQFLP----RILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFD 156 (534)
T ss_pred HHhcCCcceeecCCccCC----eecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECCCCeEEEcC
Confidence 00 0 0001111 112222222 33455566666 5788899999999988899988855 5689999
Q ss_pred EEEEecCCCh
Q 007945 252 LIIDAMGNFS 261 (584)
Q Consensus 252 lVIdADG~~S 261 (584)
.||-|+|+..
T Consensus 157 ~VVLAtGh~~ 166 (534)
T PRK09897 157 LAVIATGHVW 166 (534)
T ss_pred EEEECCCCCC
Confidence 9999999854
No 166
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=98.01 E-value=0.00031 Score=72.67 Aligned_cols=71 Identities=20% Similarity=0.324 Sum_probs=52.1
Q ss_pred eCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEe---------CC-----------eEEEEEcCC--cEEEccEEEEecCC
Q 007945 202 VSPAKLIEIVKKRFISLGGVIFEGYSVSSICTY---------EN-----------AAVLLLAEG--KILSSHLIIDAMGN 259 (584)
Q Consensus 202 vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~---------~~-----------gv~V~~~~G--~~i~ArlVIdADG~ 259 (584)
+|+..|+..+++++...|+.+. +.+|++.+.+ ++ ++.|...|+ +++++.++|.|.|+
T Consensus 240 fdpw~LLs~~rrk~~~lGv~f~-~GeV~~Fef~sqr~v~~~tDd~t~~~~~~~i~~vvV~m~d~~~r~vk~al~V~aAGa 318 (509)
T KOG2853|consen 240 FDPWALLSGIRRKAITLGVQFV-KGEVVGFEFESQRAVHAFTDDGTAKLRAQRISGVVVRMNDALARPVKFALCVNAAGA 318 (509)
T ss_pred cCHHHHHHHHHHHhhhhcceEe-cceEEEEEEecccceeeecccchhhhhhcccceeEEecCchhcCceeEEEEEeccCc
Confidence 7888999999999998887654 4456665544 22 244554443 57999999999999
Q ss_pred ChH-HHhHhcCCCCC
Q 007945 260 FSP-VVKQIRSGRKP 273 (584)
Q Consensus 260 ~S~-v~rql~~~~~~ 273 (584)
+|- |++.++++.++
T Consensus 319 ~s~QvArlAgIG~g~ 333 (509)
T KOG2853|consen 319 WSGQVARLAGIGKGP 333 (509)
T ss_pred cHHHHHHHhccCCCC
Confidence 997 88877777543
No 167
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=98.01 E-value=3.6e-05 Score=83.63 Aligned_cols=134 Identities=17% Similarity=0.079 Sum_probs=74.5
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCc---------ccccCCHHHHHHHHHcCCCcccccchhhhcccC
Q 007945 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGRE---------QEWNISRKELLELVESGILVEDDIDEATATKFN 180 (584)
Q Consensus 111 yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~---------r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~ 180 (584)
.||+||||| +|+.+|..||++|++|+|+|+++..+.+ +.-+.|-.....+...|+|.+ +++.. .
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~~p~~~~~~~~elvcs~Slgg~~l~~a~Gil~~-ei~~l-----g 74 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKLTPAHHTEDLAELVCSNSLGAKALDRAAGLLKT-EMRQL-----S 74 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEeccccccCchhhhhhhhhhcccccccchhHHhccCcHHH-HHhhc-----C
Confidence 489999976 6999999999999999999987653321 111122222334445555532 11110 0
Q ss_pred CceeeecCCCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCC-
Q 007945 181 PNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGN- 259 (584)
Q Consensus 181 ~~~v~f~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~- 259 (584)
. +.+.......++..-...+|+..+.+.+.+++.+.....+...+++++.. .+.||-|+|.
T Consensus 75 ~--l~~~~ad~~~Ipagg~~~vDR~lF~~~L~~qLe~~pnItviq~eV~dL~~----------------~d~VViATG~~ 136 (433)
T TIGR00137 75 S--LIITAADRHAVPAGGALAVDRGIFSRSLTEQVASHPNVTLIREEVTEIPE----------------EGITVIATGPL 136 (433)
T ss_pred e--eeeehhhhhCCCCCceEEehHHHHHHHHHHHHHhCCCcEEEeeeeEEEcc----------------CCeEEEeCCCC
Confidence 0 11111011111222234578888889999998776442223445554431 2357778885
Q ss_pred -ChHHHhHhc
Q 007945 260 -FSPVVKQIR 268 (584)
Q Consensus 260 -~S~v~rql~ 268 (584)
...+.+++.
T Consensus 137 ~s~~La~~L~ 146 (433)
T TIGR00137 137 TSPALSEDLK 146 (433)
T ss_pred ccHHHHHHHH
Confidence 344666554
No 168
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.01 E-value=4.3e-05 Score=86.83 Aligned_cols=60 Identities=18% Similarity=0.150 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEEc-CCc--EEEc-cEEEEecCCChHHH
Q 007945 205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLA-EGK--ILSS-HLIIDAMGNFSPVV 264 (584)
Q Consensus 205 ~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~-V~~~-~G~--~i~A-rlVIdADG~~S~v~ 264 (584)
..+...|.+++++.|++++.+++++++..+++.++ |.+. +++ ++.| +-||-|+|..+.-.
T Consensus 221 ~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~~g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~~n~ 285 (578)
T PRK12843 221 NALIGRLLYSLRARGVRILTQTDVESLETDHGRVIGATVVQGGVRRRIRARGGVVLATGGFNRHP 285 (578)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEeeCCEEEEEEEecCCeEEEEEccceEEECCCCcccCH
Confidence 34677888999999999999999999987666443 3333 343 5786 68888999888743
No 169
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.00 E-value=8.1e-05 Score=84.20 Aligned_cols=57 Identities=14% Similarity=0.328 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEE-cCCc--EEEcc-EEEEecCCChH
Q 007945 206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLL-AEGK--ILSSH-LIIDAMGNFSP 262 (584)
Q Consensus 206 ~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~-V~~-~~G~--~i~Ar-lVIdADG~~S~ 262 (584)
.+...|.+++++.|++++.++.++++..+++.|+ |.. .+|+ ++.|+ -||-|+|..+.
T Consensus 209 ~l~~~l~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~g~~~~i~A~~aVIlAtGG~~~ 270 (557)
T PRK12844 209 ALIGRMLEAALAAGVPLWTNTPLTELIVEDGRVVGVVVVRDGREVLIRARRGVLLASGGFGH 270 (557)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEEEECCeEEEEEecceEEEecCCccC
Confidence 4566778889899999999999999988766443 333 2343 58895 57778887765
No 170
>PRK07512 L-aspartate oxidase; Provisional
Probab=97.99 E-value=7.1e-05 Score=83.85 Aligned_cols=59 Identities=17% Similarity=0.261 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHhC-CCEEEeCceEEEEEEeCCeEE-EEEc-CCc--EEEccEEEEecCCChH
Q 007945 204 PAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAV-LLLA-EGK--ILSSHLIIDAMGNFSP 262 (584)
Q Consensus 204 ~~~L~~~L~~~a~~~-G~~i~~~t~v~~v~~~~~gv~-V~~~-~G~--~i~ArlVIdADG~~S~ 262 (584)
...+.+.|.+++.+. |++++.++.++++..+++.++ |.+. ++. +++|+-||-|+|..+.
T Consensus 135 G~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~~g~v~Gv~~~~~~~~~~i~Ak~VVLATGG~~~ 198 (513)
T PRK07512 135 GAAIMRALIAAVRATPSITVLEGAEARRLLVDDGAVAGVLAATAGGPVVLPARAVVLATGGIGG 198 (513)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECcChhheeecCCEEEEEEEEeCCeEEEEECCEEEEcCCCCcC
Confidence 345778888888765 899999999999876655332 3332 232 6999999999999764
No 171
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=97.99 E-value=8.4e-05 Score=61.60 Aligned_cols=78 Identities=24% Similarity=0.318 Sum_probs=61.4
Q ss_pred EEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCCc
Q 007945 113 VIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKGE 191 (584)
Q Consensus 113 VVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~~ 191 (584)
|+||||| +|+-+|..|++.|.+|.+|++.+.+. + .
T Consensus 2 vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~-~-----------------------------------------~-- 37 (80)
T PF00070_consen 2 VVVIGGGFIGIELAEALAELGKEVTLIERSDRLL-P-----------------------------------------G-- 37 (80)
T ss_dssp EEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS-T-----------------------------------------T--
T ss_pred EEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh-h-----------------------------------------h--
Confidence 7899965 79999999999999999999886322 0 0
Q ss_pred ccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCC
Q 007945 192 IWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG 245 (584)
Q Consensus 192 l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G 245 (584)
++ ..+.+.+.+.+++.|++++.++.+.++..++++++|+++||
T Consensus 38 ----------~~-~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~V~~~~g 80 (80)
T PF00070_consen 38 ----------FD-PDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDGVEVTLEDG 80 (80)
T ss_dssp ----------SS-HHHHHHHHHHHHHTTEEEEESEEEEEEEEETTSEEEEEETS
T ss_pred ----------cC-HHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCEEEEEEecC
Confidence 01 12345566777888999999999999999988877888775
No 172
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.98 E-value=5.5e-05 Score=82.78 Aligned_cols=135 Identities=15% Similarity=0.134 Sum_probs=86.9
Q ss_pred CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHH----HHHHHcCCCcccccchhhhcccCCcee
Q 007945 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKEL----LELVESGILVEDDIDEATATKFNPNRC 184 (584)
Q Consensus 110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l----~~L~~lGl~~~~ele~~i~~~~~~~~v 184 (584)
.-+|+|||+ ++|+++|..|.+.|+.|+++||...++. -|.....+= .....+ ....+..-.
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGG--lW~y~~~~~~~~ss~Y~~l------------~tn~pKe~~ 71 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGG--LWKYTENVEVVHSSVYKSL------------RTNLPKEMM 71 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccc--eEeecCcccccccchhhhh------------hccCChhhh
Confidence 469999995 6799999999999999999999987662 132211000 000000 000000001
Q ss_pred eecCCCcccccc-cccceeCHHHHHHHHHHHHHhCCC--EEEeCceEEEEEEeC-CeEEEEEcCC----cEEEccEEEEe
Q 007945 185 GFEGKGEIWVED-ILNLGVSPAKLIEIVKKRFISLGG--VIFEGYSVSSICTYE-NAAVLLLAEG----KILSSHLIIDA 256 (584)
Q Consensus 185 ~f~~~~~l~~~~-~l~~~vd~~~L~~~L~~~a~~~G~--~i~~~t~v~~v~~~~-~gv~V~~~~G----~~i~ArlVIdA 256 (584)
.|.+ ...++ ..++.-+...+.+.|..-|+.-+. .+..++++..++... +.|.|.+.++ .+..+|.||-|
T Consensus 72 ~~~d---fpf~~~~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVc 148 (448)
T KOG1399|consen 72 GYSD---FPFPERDPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVC 148 (448)
T ss_pred cCCC---CCCcccCcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEc
Confidence 1111 11111 112224456788999998888775 789999999998877 5888888653 47889999999
Q ss_pred cCCCh
Q 007945 257 MGNFS 261 (584)
Q Consensus 257 DG~~S 261 (584)
+|++.
T Consensus 149 tGh~~ 153 (448)
T KOG1399|consen 149 TGHYV 153 (448)
T ss_pred ccCcC
Confidence 99994
No 173
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.95 E-value=3.4e-05 Score=85.02 Aligned_cols=37 Identities=35% Similarity=0.521 Sum_probs=28.9
Q ss_pred CccEEEEcchHHHHHHHHHHhCCCeEEEEcCCCCCCCc
Q 007945 110 TFDVIVCGGTLGIFIATALSFKGLRVAIVERNTLKGRE 147 (584)
Q Consensus 110 ~yDVVIVGGg~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~ 147 (584)
+|||||||||+|+..| ++++.|.+|+||||....|..
T Consensus 2 ~yD~vvIG~G~~g~~a-a~~~~g~~V~lie~~~~GGtC 38 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIP-DPRFADKRIAIVEKGTFGGTC 38 (452)
T ss_pred CcCEEEECCCHHHHHH-HHHHCCCeEEEEeCCCCCCee
Confidence 5999999987655555 345679999999998777643
No 174
>PLN02612 phytoene desaturase
Probab=97.94 E-value=0.0057 Score=69.50 Aligned_cols=53 Identities=21% Similarity=0.323 Sum_probs=41.6
Q ss_pred HHHHHHHHHHhCCCEEEeCceEEEEEEeCCeE--EEEEcCCcEEEccEEEEecCC
Q 007945 207 LIEIVKKRFISLGGVIFEGYSVSSICTYENAA--VLLLAEGKILSSHLIIDAMGN 259 (584)
Q Consensus 207 L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv--~V~~~~G~~i~ArlVIdADG~ 259 (584)
+-+.|.+.+++.|++|+.+++|++|..++++. .|.+.+|+++.||.||-|...
T Consensus 310 l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~ 364 (567)
T PLN02612 310 LCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPV 364 (567)
T ss_pred HHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCH
Confidence 33555566667899999999999998876653 366778889999999999754
No 175
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=97.94 E-value=9.6e-05 Score=82.95 Aligned_cols=137 Identities=21% Similarity=0.182 Sum_probs=79.5
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (584)
Q Consensus 112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~ 190 (584)
.|+||||| +|+++|..|.+.|+.|+++||++..|- .|...... .-|-. .-.+.+. ...+.....|.+
T Consensus 3 rVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG--~W~~~~~~-----~~g~~--~~y~sl~-~n~sk~~~~fsd-- 70 (531)
T PF00743_consen 3 RVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGG--LWRYTENP-----EDGRS--SVYDSLH-TNTSKEMMAFSD-- 70 (531)
T ss_dssp EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSG--GGCHSTTC-----CCSEG--GGSTT-B--SS-GGGSCCTT--
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCc--cCeeCCcC-----CCCcc--ccccceE-EeeCchHhcCCC--
Confidence 58999965 699988899999999999999987662 23211000 00000 0000000 000011122221
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhCCC--EEEeCceEEEEEEeCC-----eEEEEEcC-Cc--EEEccEEEEecCCC
Q 007945 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGG--VIFEGYSVSSICTYEN-----AAVLLLAE-GK--ILSSHLIIDAMGNF 260 (584)
Q Consensus 191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~--~i~~~t~v~~v~~~~~-----gv~V~~~~-G~--~i~ArlVIdADG~~ 260 (584)
...|....--.....+.+.|..-|...+. .|..+|+|+++...++ .+.|++.+ |+ +-..|.||-|+|++
T Consensus 71 -fp~p~~~p~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~ 149 (531)
T PF00743_consen 71 -FPFPEDYPDFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHF 149 (531)
T ss_dssp -S-HCCCCSSSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SS
T ss_pred -cCCCCCCCCCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCc
Confidence 11111111124567889999999988776 6899999999988754 58888764 43 34568899999998
Q ss_pred h
Q 007945 261 S 261 (584)
Q Consensus 261 S 261 (584)
+
T Consensus 150 ~ 150 (531)
T PF00743_consen 150 S 150 (531)
T ss_dssp S
T ss_pred C
Confidence 7
No 176
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.92 E-value=8e-05 Score=82.58 Aligned_cols=31 Identities=39% Similarity=0.528 Sum_probs=28.6
Q ss_pred CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcC
Q 007945 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVER 140 (584)
Q Consensus 110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr 140 (584)
+|||||||| ++|+++|..+++.|.+|+|||+
T Consensus 4 ~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~ 35 (475)
T PRK06327 4 QFDVVVIGAGPGGYVAAIRAAQLGLKVACIEA 35 (475)
T ss_pred ceeEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 699999996 5799999999999999999998
No 177
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.92 E-value=7.1e-05 Score=82.82 Aligned_cols=36 Identities=42% Similarity=0.581 Sum_probs=30.5
Q ss_pred CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCC-CCCC
Q 007945 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERN-TLKG 145 (584)
Q Consensus 110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~-~~~~ 145 (584)
+|||+|||| |+|+++|..++++|++|+|||++ ...|
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG 40 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGG 40 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceee
Confidence 599999995 56888888999999999999974 4444
No 178
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=97.91 E-value=0.00018 Score=81.97 Aligned_cols=57 Identities=21% Similarity=0.178 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHhCCCEEEeCceEEEEEEeC---C---eEEE-EEcCCc--EEEccEEEEecCCChH
Q 007945 206 KLIEIVKKRFISLGGVIFEGYSVSSICTYE---N---AAVL-LLAEGK--ILSSHLIIDAMGNFSP 262 (584)
Q Consensus 206 ~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~---~---gv~V-~~~~G~--~i~ArlVIdADG~~S~ 262 (584)
.+.+.+...+.+.+++++.++.++++..++ + |+++ ...+|+ .+.|+.||-|+|..+.
T Consensus 127 ~~~r~l~~~l~~~~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~ 192 (614)
T TIGR02061 127 SYKPIVAEAAKNALGDIFERIFIVKLLLDKNTPNRIAGAVGFNVRANEVHVFKAKTVIVAAGGAVN 192 (614)
T ss_pred hHHHHHHHHHHhCCCeEEcccEEEEEEecCCCCCeEEEEEEEEeCCCcEEEEECCEEEECCCcccc
Confidence 445566666666778999999999998764 2 3333 223454 6899999999999863
No 179
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=97.90 E-value=0.00022 Score=87.21 Aligned_cols=38 Identities=29% Similarity=0.316 Sum_probs=32.5
Q ss_pred CCCccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945 108 VGTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG 145 (584)
Q Consensus 108 ~~~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~ 145 (584)
+.++||||||| ++|+++|..+++.|.+|+||||.+..+
T Consensus 407 t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~G 445 (1167)
T PTZ00306 407 SLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLG 445 (1167)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCC
Confidence 34699999996 579999999999999999999987654
No 180
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=97.90 E-value=0.00017 Score=78.95 Aligned_cols=58 Identities=17% Similarity=0.146 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHhCCCEEEeCceEEEEEEeC-Ce-EE-EEEc-CCcEEEccEEEEecCCChH
Q 007945 205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYE-NA-AV-LLLA-EGKILSSHLIIDAMGNFSP 262 (584)
Q Consensus 205 ~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~-~g-v~-V~~~-~G~~i~ArlVIdADG~~S~ 262 (584)
..+.+.|.+++++.|++++.+++++++..++ ++ ++ |... ++.+++|+.||-|+|..+.
T Consensus 123 ~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~~~ 184 (432)
T TIGR02485 123 KALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGLGA 184 (432)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCccc
Confidence 4577888999999999999999999998763 33 32 3333 3458999999999998765
No 181
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.90 E-value=4.8e-05 Score=83.39 Aligned_cols=33 Identities=39% Similarity=0.551 Sum_probs=29.9
Q ss_pred CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNT 142 (584)
Q Consensus 110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~ 142 (584)
+|||||||| ++|+++|..|+++|++|+||||..
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~ 36 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESK 36 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCC
Confidence 599999996 568888889999999999999985
No 182
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=97.89 E-value=0.00016 Score=82.57 Aligned_cols=30 Identities=30% Similarity=0.309 Sum_probs=27.2
Q ss_pred EEEEcc-hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945 113 VIVCGG-TLGIFIATALSFKGLRVAIVERNT 142 (584)
Q Consensus 113 VVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~ 142 (584)
|||||| ++|+++|..+++.|.+|+||||.+
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~ 31 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVD 31 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecC
Confidence 789995 579999999999999999999987
No 183
>PRK13748 putative mercuric reductase; Provisional
Probab=97.87 E-value=9.3e-05 Score=83.69 Aligned_cols=37 Identities=30% Similarity=0.428 Sum_probs=31.9
Q ss_pred CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCC
Q 007945 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGR 146 (584)
Q Consensus 110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~ 146 (584)
+|||||||| +.|+++|..|++.|++|+|||+...+|.
T Consensus 98 ~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~~~GG~ 135 (561)
T PRK13748 98 PLHVAVIGSGGAAMAAALKAVEQGARVTLIERGTIGGT 135 (561)
T ss_pred CCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCcceee
Confidence 699999996 5688888899999999999999865553
No 184
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=97.85 E-value=0.00028 Score=76.31 Aligned_cols=69 Identities=9% Similarity=0.058 Sum_probs=55.2
Q ss_pred eeCHHHHHHHHHHHHHhC-CCEEEeCceEEEEEEeCCe-EEEEEcC-----CcEEEccEEEEecCCChH-HHhHhcC
Q 007945 201 GVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENA-AVLLLAE-----GKILSSHLIIDAMGNFSP-VVKQIRS 269 (584)
Q Consensus 201 ~vd~~~L~~~L~~~a~~~-G~~i~~~t~v~~v~~~~~g-v~V~~~~-----G~~i~ArlVIdADG~~S~-v~rql~~ 269 (584)
.||-..|-+.|.+.+.+. |+++..+++|+++.+.+|+ +.|++.| .++++||+|+-..|..|- +.+..++
T Consensus 177 DVnFG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~LLqksgi 253 (488)
T PF06039_consen 177 DVNFGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGALPLLQKSGI 253 (488)
T ss_pred cccHHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHhHHHHHHcCC
Confidence 377778888888888887 8899999999999998887 8888753 347999998777777765 6665554
No 185
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.83 E-value=1.9e-05 Score=83.86 Aligned_cols=144 Identities=15% Similarity=0.191 Sum_probs=76.9
Q ss_pred CccEEEEc-chHHHHHHHHHHhCC-CeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCC-ceeee
Q 007945 110 TFDVIVCG-GTLGIFIATALSFKG-LRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNP-NRCGF 186 (584)
Q Consensus 110 ~yDVVIVG-Gg~Gl~~Aa~LAr~G-lrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~-~~v~f 186 (584)
.||+|+|| ||.++++|+.|...+ ++++.+||.+....+..+-+....++. .. +.+++.. .+| ...+|
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~gmll~~~~~q~----~f-----l~Dlvt~-~~P~s~~sf 71 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHPGMLLPGARMQV----SF-----LKDLVTL-RDPTSPFSF 71 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTGGG--SS-B-SS-----T-----TSSSSTT-T-TTSTTSH
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCCccCCCCCcccc----cc-----ccccCcC-cCCCCcccH
Confidence 58999999 788999999998664 999999998865443333222211110 00 1111110 111 11222
Q ss_pred cC----CCcccccccc-cceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCC----eEEEEEc----CCcEEEccEE
Q 007945 187 EG----KGEIWVEDIL-NLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN----AAVLLLA----EGKILSSHLI 253 (584)
Q Consensus 187 ~~----~~~l~~~~~l-~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~----gv~V~~~----~G~~i~ArlV 253 (584)
.+ .++++.-... .....+..+.+.|...+.+....+..+++|++|...++ .+.|++. +++++.||-|
T Consensus 72 lnYL~~~~rl~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~v 151 (341)
T PF13434_consen 72 LNYLHEHGRLYEFYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNV 151 (341)
T ss_dssp HHHHHHTT-HHHHHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEE
T ss_pred HHHHHHcCChhhhhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeE
Confidence 11 1121100000 11256778888998888777777999999999987654 4778874 3468999999
Q ss_pred EEecCCChHH
Q 007945 254 IDAMGNFSPV 263 (584)
Q Consensus 254 IdADG~~S~v 263 (584)
|-|.|....+
T Consensus 152 Vla~G~~P~i 161 (341)
T PF13434_consen 152 VLATGGQPRI 161 (341)
T ss_dssp EE----EE--
T ss_pred EECcCCCCCC
Confidence 9999944333
No 186
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.82 E-value=5.5e-05 Score=82.18 Aligned_cols=67 Identities=18% Similarity=0.305 Sum_probs=50.5
Q ss_pred CHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE--EEEcC---Cc--EEEccEEEEecCCChHHHhHhcC
Q 007945 203 SPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV--LLLAE---GK--ILSSHLIIDAMGNFSPVVKQIRS 269 (584)
Q Consensus 203 d~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~--V~~~~---G~--~i~ArlVIdADG~~S~v~rql~~ 269 (584)
|-.++.-.+.--|.++|+.+....+|.++..++++-+ +.+.| |+ +|+|+.||.|+|..|--.+++..
T Consensus 222 nDaRmnl~vAlTA~r~GA~v~Nh~ev~~Llkd~~~kv~Ga~~rD~iTG~e~~I~Ak~VVNATGpfsDsIr~Mdd 295 (680)
T KOG0042|consen 222 NDARMNLAVALTAARNGATVLNHVEVVSLLKDKDGKVIGARARDHITGKEYEIRAKVVVNATGPFSDSIRKMDD 295 (680)
T ss_pred chHHHHHHHHHHHHhcchhhhhHHHHHHHhhCCCCceeeeEEEEeecCcEEEEEEEEEEeCCCCccHHHHhhcc
Confidence 4456666777778889999999999999988777522 33333 54 69999999999999986666643
No 187
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.82 E-value=0.00011 Score=80.64 Aligned_cols=33 Identities=27% Similarity=0.505 Sum_probs=29.9
Q ss_pred CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNT 142 (584)
Q Consensus 110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~ 142 (584)
.|||||||| ++|+++|..|+++|++|+|||+.+
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~ 36 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSN 36 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCC
Confidence 599999996 579999999999999999999975
No 188
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.81 E-value=0.00018 Score=86.66 Aligned_cols=109 Identities=16% Similarity=0.210 Sum_probs=69.3
Q ss_pred CCccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeec
Q 007945 109 GTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE 187 (584)
Q Consensus 109 ~~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~ 187 (584)
..+||+|||| ++|+++|..+++.|++|+|+|+.+..+.. +.. ... ...
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~----~~~-------------------------~~~--~~~ 210 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGS----LLS-------------------------EAE--TID 210 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCe----eec-------------------------ccc--ccC
Confidence 4689999995 67999999999999999999998754311 000 000 000
Q ss_pred CCCcccccccccceeCHHHHHHHHHHHHHhCC-CEEEeCceEEEEEEeCCeEEEE-E--------cC---C--cEEEccE
Q 007945 188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLG-GVIFEGYSVSSICTYENAAVLL-L--------AE---G--KILSSHL 252 (584)
Q Consensus 188 ~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G-~~i~~~t~v~~v~~~~~gv~V~-~--------~~---G--~~i~Arl 252 (584)
..+...+...+.+++.+.+ ++++.+++|.++..+..-..+. . .+ + .+++++-
T Consensus 211 -------------g~~~~~~~~~~~~~l~~~~~v~v~~~t~V~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~ 277 (985)
T TIGR01372 211 -------------GKPAADWAAATVAELTAMPEVTLLPRTTAFGYYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKR 277 (985)
T ss_pred -------------CccHHHHHHHHHHHHhcCCCcEEEcCCEEEEEecCCeEEEEEEeeeccccccCCccccceEEEEcCE
Confidence 0122344455666776664 8999999998874322111111 0 01 1 1699999
Q ss_pred EEEecCCCh
Q 007945 253 IIDAMGNFS 261 (584)
Q Consensus 253 VIdADG~~S 261 (584)
||-|+|...
T Consensus 278 VILATGa~~ 286 (985)
T TIGR01372 278 VVLATGAHE 286 (985)
T ss_pred EEEcCCCCC
Confidence 999999864
No 189
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.81 E-value=0.00021 Score=79.03 Aligned_cols=37 Identities=32% Similarity=0.474 Sum_probs=32.0
Q ss_pred CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCC
Q 007945 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGR 146 (584)
Q Consensus 110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~ 146 (584)
+|||+|||| ++|+++|..++++|.+|+|||+....|.
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~~~GG~ 41 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKKYWGGV 41 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCc
Confidence 599999996 5688888899999999999999866654
No 190
>PLN02546 glutathione reductase
Probab=97.80 E-value=0.00017 Score=81.40 Aligned_cols=33 Identities=24% Similarity=0.205 Sum_probs=28.2
Q ss_pred CCCccEEEEcch-HHHHHHHHHHhCCCeEEEEcC
Q 007945 108 VGTFDVIVCGGT-LGIFIATALSFKGLRVAIVER 140 (584)
Q Consensus 108 ~~~yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr 140 (584)
..+|||+||||| .|..+|..+|++|.+|+|||+
T Consensus 77 ~~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~ 110 (558)
T PLN02546 77 HYDFDLFTIGAGSGGVRASRFASNFGASAAVCEL 110 (558)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 346999999965 577777799999999999996
No 191
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.80 E-value=1.9e-05 Score=87.84 Aligned_cols=54 Identities=17% Similarity=0.230 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHhCCCEEEeCceEEEEEEeCC-eEEEEEcCCcEEEccEEEEecCC
Q 007945 206 KLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AAVLLLAEGKILSSHLIIDAMGN 259 (584)
Q Consensus 206 ~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~-gv~V~~~~G~~i~ArlVIdADG~ 259 (584)
.+.+.|.+.++++|++|+.+++|++|..+++ ++++...+|..+.+|.||.+...
T Consensus 225 al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~g~g~~~~~~~g~~~~ad~vv~~~~~ 279 (487)
T COG1233 225 ALVDALAELAREHGGEIRTGAEVSQILVEGGKGVGVRTSDGENIEADAVVSNADP 279 (487)
T ss_pred HHHHHHHHHHHHcCCEEECCCceEEEEEeCCcceEEeccccceeccceeEecCch
Confidence 4677899999999999999999999999877 56777777778999999987666
No 192
>PRK07846 mycothione reductase; Reviewed
Probab=97.79 E-value=0.00011 Score=80.89 Aligned_cols=37 Identities=35% Similarity=0.506 Sum_probs=28.1
Q ss_pred CccEEEEcchHHHHHHHHHHhCCCeEEEEcCCCCCCCc
Q 007945 110 TFDVIVCGGTLGIFIATALSFKGLRVAIVERNTLKGRE 147 (584)
Q Consensus 110 ~yDVVIVGGg~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~ 147 (584)
+|||||||||+|+..|+ +++.|.+|+|||+....|..
T Consensus 1 ~yD~vVIG~G~~g~~aa-~~~~G~~V~lie~~~~GGtC 37 (451)
T PRK07846 1 HYDLIIIGTGSGNSILD-ERFADKRIAIVEKGTFGGTC 37 (451)
T ss_pred CCCEEEECCCHHHHHHH-HHHCCCeEEEEeCCCCCCcc
Confidence 48999999876555444 34569999999998776643
No 193
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.79 E-value=0.00015 Score=81.69 Aligned_cols=57 Identities=21% Similarity=0.341 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHh-CCCEEEeCceEEEEEEeCCe-E---E-EEEcCCc--EEEccEEEEecCCCh
Q 007945 205 AKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENA-A---V-LLLAEGK--ILSSHLIIDAMGNFS 261 (584)
Q Consensus 205 ~~L~~~L~~~a~~-~G~~i~~~t~v~~v~~~~~g-v---~-V~~~~G~--~i~ArlVIdADG~~S 261 (584)
..+...|.+++.+ .+.+++....++++..++++ + + +.+.+|+ .++|+-||-|+|...
T Consensus 138 ~~ll~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~Gvv~~~~~~g~~~~~~akavilaTGG~g 202 (562)
T COG1053 138 HELLHTLYEQLLKFSGIEIFDEYFVLDLLVDDGGGVAGVVARDLRTGELYVFRAKAVILATGGAG 202 (562)
T ss_pred HHHHHHHHHHHHHhhcchhhhhhhhhhheecCCCcEEEEEEEEecCCcEEEEecCcEEEccCCce
Confidence 3577888888887 45689999999999877553 2 2 2233454 588999999998776
No 194
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=97.78 E-value=4.3e-05 Score=83.44 Aligned_cols=139 Identities=18% Similarity=0.199 Sum_probs=82.1
Q ss_pred CccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCC-CCccccc-----CCHHH-HHHHHHcCCCcccccchhhhcccCC
Q 007945 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLK-GREQEWN-----ISRKE-LLELVESGILVEDDIDEATATKFNP 181 (584)
Q Consensus 110 ~yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~-~~~r~w~-----Is~~~-l~~L~~lGl~~~~ele~~i~~~~~~ 181 (584)
+||||||||| +|+-+|++.||.|++|+|+--+... +. -.+| +.+.. ..++..+|= ......+.
T Consensus 4 ~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~-msCNPaIGG~~KG~lvrEIDALGG--------~Mg~~~D~ 74 (621)
T COG0445 4 EYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGE-MSCNPAIGGPGKGHLVREIDALGG--------LMGKAADK 74 (621)
T ss_pred CCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceee-cccccccCCcccceeEEeehhccc--------hHHHhhhh
Confidence 5999999988 8999999999999999999765421 11 0111 11110 011222220 00000011
Q ss_pred ceeeecC----CCc-ccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCe-E-EEEEcCCcEEEccEEE
Q 007945 182 NRCGFEG----KGE-IWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-A-VLLLAEGKILSSHLII 254 (584)
Q Consensus 182 ~~v~f~~----~~~-l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~g-v-~V~~~~G~~i~ArlVI 254 (584)
..+.|.- +++ .+.+ ...+|+....+.+.+.+.....--+....|+++..+++. + -|.+.+|..+.|+.||
T Consensus 75 ~~IQ~r~LN~sKGPAVra~---RaQaDk~~Y~~~mk~~le~~~NL~l~q~~v~dli~e~~~~v~GV~t~~G~~~~a~aVV 151 (621)
T COG0445 75 AGIQFRMLNSSKGPAVRAP---RAQADKWLYRRAMKNELENQPNLHLLQGEVEDLIVEEGQRVVGVVTADGPEFHAKAVV 151 (621)
T ss_pred cCCchhhccCCCcchhcch---hhhhhHHHHHHHHHHHHhcCCCceehHhhhHHHhhcCCCeEEEEEeCCCCeeecCEEE
Confidence 1122210 111 1111 123677777778888887776544455668888876653 4 4777889999999999
Q ss_pred EecCCC
Q 007945 255 DAMGNF 260 (584)
Q Consensus 255 dADG~~ 260 (584)
-++|..
T Consensus 152 lTTGTF 157 (621)
T COG0445 152 LTTGTF 157 (621)
T ss_pred Eeeccc
Confidence 999976
No 195
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.75 E-value=0.00023 Score=78.84 Aligned_cols=141 Identities=19% Similarity=0.250 Sum_probs=75.3
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCccccc-CCHHHHHHHHHcCCCcccccchhhhcccCCceeeec-
Q 007945 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWN-ISRKELLELVESGILVEDDIDEATATKFNPNRCGFE- 187 (584)
Q Consensus 111 yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~-Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~- 187 (584)
-|||||||| .|+.+|..++++|.+|+||||....+....++ +..+.+-.-.+ +.. .+.. ...+ .+...
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~~gG~c~~~gciPsK~l~~~a~--~~~--~~~~--~~~~---g~~~~~ 72 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERDGLGGAAVLTDCVPSKTLIATAE--VRT--ELRR--AAEL---GIRFID 72 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCCCCcccccCCcchHHHHHHHH--HHH--HHHH--HHhC---Cccccc
Confidence 389999965 68888889999999999999987666432222 22111100000 000 0000 0000 00000
Q ss_pred -CCCcccccccccceeC--HHHHHHHHHHHHHhCCCEEEeCceEEEEE--EeCCeEEEEEcCCc--EEEccEEEEecCCC
Q 007945 188 -GKGEIWVEDILNLGVS--PAKLIEIVKKRFISLGGVIFEGYSVSSIC--TYENAAVLLLAEGK--ILSSHLIIDAMGNF 260 (584)
Q Consensus 188 -~~~~l~~~~~l~~~vd--~~~L~~~L~~~a~~~G~~i~~~t~v~~v~--~~~~gv~V~~~~G~--~i~ArlVIdADG~~ 260 (584)
....+..+..... ++ .+.+.+.+.+.+.+.|++++.++. +.++ .+++.++|++.+|+ ++.+|.||-|+|..
T Consensus 73 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~gV~~~~g~~-~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs~ 150 (466)
T PRK07845 73 DGEARVDLPAVNAR-VKALAAAQSADIRARLEREGVRVIAGRG-RLIDPGLGPHRVKVTTADGGEETLDADVVLIATGAS 150 (466)
T ss_pred CcccccCHHHHHHH-HHHHHHHHHHHHHHHHHHCCCEEEEEEE-EEeecccCCCEEEEEeCCCceEEEecCEEEEcCCCC
Confidence 0000000000000 00 011233456677778999988753 3322 45667888777775 79999999999997
Q ss_pred hH
Q 007945 261 SP 262 (584)
Q Consensus 261 S~ 262 (584)
..
T Consensus 151 p~ 152 (466)
T PRK07845 151 PR 152 (466)
T ss_pred CC
Confidence 63
No 196
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=97.74 E-value=0.00042 Score=74.40 Aligned_cols=104 Identities=16% Similarity=0.241 Sum_probs=78.7
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCC
Q 007945 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK 189 (584)
Q Consensus 111 yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~ 189 (584)
-.|+||||| .|+-+|..|++.|.+|.++++.+.... .
T Consensus 142 ~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~------------------------------------------~ 179 (377)
T PRK04965 142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLA------------------------------------------S 179 (377)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccc------------------------------------------h
Confidence 369999975 699999999999999999998652100 0
Q ss_pred CcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCCh--HHHhHh
Q 007945 190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS--PVVKQI 267 (584)
Q Consensus 190 ~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S--~v~rql 267 (584)
. .+ ..+...+.+.+.+.|++++.++++.++..+++++.|++.+|+++.+++||.|+|..+ .+.++.
T Consensus 180 -~----------~~-~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~~p~~~l~~~~ 247 (377)
T PRK04965 180 -L----------MP-PEVSSRLQHRLTEMGVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGLRPNTALARRA 247 (377)
T ss_pred -h----------CC-HHHHHHHHHHHHhCCCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCCCcchHHHHHC
Confidence 0 00 122344556677789999999999999877777788888899999999999999865 466555
Q ss_pred c
Q 007945 268 R 268 (584)
Q Consensus 268 ~ 268 (584)
+
T Consensus 248 g 248 (377)
T PRK04965 248 G 248 (377)
T ss_pred C
Confidence 4
No 197
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.72 E-value=0.00017 Score=79.68 Aligned_cols=36 Identities=31% Similarity=0.481 Sum_probs=31.5
Q ss_pred ccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCC
Q 007945 111 FDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGR 146 (584)
Q Consensus 111 yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~ 146 (584)
|||||||| |.|.++|..++++|++|+||||....|.
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~~GG~ 37 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGPLGGT 37 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCcccCC
Confidence 79999996 5688888899999999999999876664
No 198
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.72 E-value=0.00015 Score=79.89 Aligned_cols=36 Identities=36% Similarity=0.576 Sum_probs=31.1
Q ss_pred CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG 145 (584)
Q Consensus 110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~ 145 (584)
+|||||||| ++|+++|..|++.|.+|+|||+....+
T Consensus 3 ~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~GG 39 (460)
T PRK06292 3 KYDVIVIGAGPAGYVAARRAAKLGKKVALIEKGPLGG 39 (460)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCeEEEEeCCcccc
Confidence 599999996 568888889999999999999965544
No 199
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.70 E-value=6.3e-05 Score=72.62 Aligned_cols=109 Identities=20% Similarity=0.241 Sum_probs=67.3
Q ss_pred cEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945 112 DVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (584)
Q Consensus 112 DVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~ 190 (584)
||||||| ++|+++|..|++.|++|+++|+.+...... ..++.. .+. +. .
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~-~~~~~~---~~~----------~~----------------~ 50 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNS-GCIPSP---LLV----------EI----------------A 50 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHH-SHHHHH---HHH----------HH----------------H
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEeccccccccc-cccccc---ccc----------cc----------------c
Confidence 7999996 579999999999999999998875311100 000000 000 00 0
Q ss_pred cccccccccceeCHHHHH--H--HHHHHHHhCCCEEEeCceEEEEEEeCCeE-----EEE---EcCCcEEEccEEEEecC
Q 007945 191 EIWVEDILNLGVSPAKLI--E--IVKKRFISLGGVIFEGYSVSSICTYENAA-----VLL---LAEGKILSSHLIIDAMG 258 (584)
Q Consensus 191 ~l~~~~~l~~~vd~~~L~--~--~L~~~a~~~G~~i~~~t~v~~v~~~~~gv-----~V~---~~~G~~i~ArlVIdADG 258 (584)
. . ...+. + .+.+++...+++++.++++.+++.....+ .+. ..++.++.++.||-|+|
T Consensus 51 ~----~-------~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG 119 (201)
T PF07992_consen 51 P----H-------RHEFLPARLFKLVDQLKNRGVEIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATG 119 (201)
T ss_dssp H----H-------HHHHHHHHHGHHHHHHHHHTHEEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEEST
T ss_pred c----c-------ccccccccccccccccccceEEEeeccccccccccccccccCcccceeeccCCceEecCCeeeecCc
Confidence 0 0 00000 0 34445556778998889999998877632 222 23456899999999999
Q ss_pred CCh
Q 007945 259 NFS 261 (584)
Q Consensus 259 ~~S 261 (584)
..+
T Consensus 120 ~~~ 122 (201)
T PF07992_consen 120 SRP 122 (201)
T ss_dssp EEE
T ss_pred ccc
Confidence 664
No 200
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.70 E-value=0.00074 Score=80.69 Aligned_cols=36 Identities=31% Similarity=0.423 Sum_probs=31.8
Q ss_pred CCCccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCC
Q 007945 108 VGTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTL 143 (584)
Q Consensus 108 ~~~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~ 143 (584)
..+|||||||| ++|+++|..+++.|.+|+||||...
T Consensus 11 ~~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 11 RLDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred eeecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 34699999996 5799999999999999999999875
No 201
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.69 E-value=0.00038 Score=75.32 Aligned_cols=96 Identities=17% Similarity=0.308 Sum_probs=73.6
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (584)
Q Consensus 112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~ 190 (584)
.|+||||| +|+-+|..|++.|.+|.|||+.+.... .
T Consensus 146 ~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~------------------------------------------~- 182 (396)
T PRK09754 146 SVVIVGAGTIGLELAASATQRRCKVTVIELAATVMG------------------------------------------R- 182 (396)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchh------------------------------------------h-
Confidence 69999975 799999999999999999998752110 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChH
Q 007945 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP 262 (584)
Q Consensus 191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~ 262 (584)
. . ...+.+.+.+.+.+.|++++.+++++++.. ++.+.|++.+|+++.|++||-|.|....
T Consensus 183 ~----------~-~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~-~~~~~v~l~~g~~i~aD~Vv~a~G~~pn 242 (396)
T PRK09754 183 N----------A-PPPVQRYLLQRHQQAGVRILLNNAIEHVVD-GEKVELTLQSGETLQADVVIYGIGISAN 242 (396)
T ss_pred h----------c-CHHHHHHHHHHHHHCCCEEEeCCeeEEEEc-CCEEEEEECCCCEEECCEEEECCCCChh
Confidence 0 0 012334556666778999999999999865 5567788888999999999999998765
No 202
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=97.63 E-value=0.0003 Score=77.29 Aligned_cols=144 Identities=22% Similarity=0.215 Sum_probs=72.6
Q ss_pred CCccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCC-CCCCCccccc-CCHHHHHHHHHcCCCcccccchhhhcccCCceee
Q 007945 109 GTFDVIVCGG-TLGIFIATALSFKGLRVAIVERN-TLKGREQEWN-ISRKELLELVESGILVEDDIDEATATKFNPNRCG 185 (584)
Q Consensus 109 ~~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~-~~~~~~r~w~-Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~ 185 (584)
.+|||||||| |.|-.+|..+|+.|.+|++||+. ...|..-.++ |....+-.- ..+. +....... ...+.
T Consensus 3 ~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~GCIPsK~Ll~~--a~~~-----~~~~~~~~-~~Gi~ 74 (454)
T COG1249 3 KEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHA--AEVI-----EEARHAAK-EYGIS 74 (454)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEeeCccccHHHHHH--HHHH-----HHHhhccc-cccee
Confidence 3799999996 56777788999999999999999 5666433232 222222110 0000 00000000 00011
Q ss_pred ecCCCcccccccccceeC-HHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChHHH
Q 007945 186 FEGKGEIWVEDILNLGVS-PAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVV 264 (584)
Q Consensus 186 f~~~~~l~~~~~l~~~vd-~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~v~ 264 (584)
.... .+..+......-+ -+.+.......++++|++++.++.- ..++..+.|...+.++++|+.+|-|+|.+..+-
T Consensus 75 ~~~~-~id~~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a~---f~~~~~v~V~~~~~~~~~a~~iiIATGS~p~~~ 150 (454)
T COG1249 75 AEVP-KIDFEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEAR---FVDPHTVEVTGEDKETITADNIIIATGSRPRIP 150 (454)
T ss_pred cCCC-CcCHHHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEEEE---ECCCCEEEEcCCCceEEEeCEEEEcCCCCCcCC
Confidence 1100 1111111100000 0112233334445568888877532 112445555543347899999999999997544
No 203
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=7.5e-05 Score=77.21 Aligned_cols=110 Identities=24% Similarity=0.315 Sum_probs=77.7
Q ss_pred CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecC
Q 007945 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG 188 (584)
Q Consensus 110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~ 188 (584)
.|||+|||| |+|.++|...||+|+|.-|+-.+ +.+. .|..++ +|..|.
T Consensus 211 ~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aer-fGGQ------------vldT~~------IENfIs------------ 259 (520)
T COG3634 211 AYDVLVVGGGPAGAAAAIYAARKGIRTGLVAER-FGGQ------------VLDTMG------IENFIS------------ 259 (520)
T ss_pred CceEEEEcCCcchhHHHHHHHhhcchhhhhhhh-hCCe------------eccccc------hhheec------------
Confidence 599999996 67888888999999999877422 3331 121111 222111
Q ss_pred CCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEe---CCeEEEEEcCCcEEEccEEEEecCCC
Q 007945 189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTY---ENAAVLLLAEGKILSSHLIIDAMGNF 260 (584)
Q Consensus 189 ~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~---~~gv~V~~~~G~~i~ArlVIdADG~~ 260 (584)
+|. .+-.+|-..|.++.+++.++++...+++++... .+-..|++.+|-.+++|-||-++|+.
T Consensus 260 -----v~~-----teGpkl~~ale~Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGAr 324 (520)
T COG3634 260 -----VPE-----TEGPKLAAALEAHVKQYDVDVMNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGAR 324 (520)
T ss_pred -----ccc-----ccchHHHHHHHHHHhhcCchhhhhhhhhcceecCCCCccEEEEecCCceeccceEEEecCcc
Confidence 111 122467788888888888888888778777653 34577999999999999999999986
No 204
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=97.63 E-value=0.00033 Score=70.59 Aligned_cols=130 Identities=17% Similarity=0.199 Sum_probs=73.6
Q ss_pred cEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCC---cc----cc--------c----CCHHHHHHHHHcCCCccccc
Q 007945 112 DVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGR---EQ----EW--------N----ISRKELLELVESGILVEDDI 171 (584)
Q Consensus 112 DVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~---~r----~w--------~----Is~~~l~~L~~lGl~~~~el 171 (584)
+|+|||+ .+|+++|..|+.+|+.|+|+||..-.+- .| .| + .-.+.++.+.+-|+.
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV----- 77 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGLV----- 77 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCce-----
Confidence 7999996 5799999999999999999999875431 01 11 0 111223444444433
Q ss_pred chhhhcccCCceeeecCCCcccccccccce-e-CHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCC-cEE
Q 007945 172 DEATATKFNPNRCGFEGKGEIWVEDILNLG-V-SPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG-KIL 248 (584)
Q Consensus 172 e~~i~~~~~~~~v~f~~~~~l~~~~~l~~~-v-d~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G-~~i 248 (584)
..|.+..-.|.+...-..++...+. . ....|-+.| ....+|..+++|+.+...++.+++++++| +..
T Consensus 78 -----~~W~~~~~~~~~~~~~~~~d~~pyvg~pgmsalak~L-----AtdL~V~~~~rVt~v~~~~~~W~l~~~~g~~~~ 147 (331)
T COG3380 78 -----DVWTPAVWTFTGDGSPPRGDEDPYVGEPGMSALAKFL-----ATDLTVVLETRVTEVARTDNDWTLHTDDGTRHT 147 (331)
T ss_pred -----eeccccccccccCCCCCCCCCCccccCcchHHHHHHH-----hccchhhhhhhhhhheecCCeeEEEecCCCccc
Confidence 2222222222221000000000010 0 111222332 33457889999999999999999999664 457
Q ss_pred EccEEEEe
Q 007945 249 SSHLIIDA 256 (584)
Q Consensus 249 ~ArlVIdA 256 (584)
.++.||-|
T Consensus 148 ~~d~vvla 155 (331)
T COG3380 148 QFDDVVLA 155 (331)
T ss_pred ccceEEEe
Confidence 77777765
No 205
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=97.62 E-value=0.00049 Score=70.59 Aligned_cols=65 Identities=18% Similarity=0.234 Sum_probs=51.0
Q ss_pred eeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCe-----EEEEEcCCcEEEccEEEEecCCChHHHh
Q 007945 201 GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-----AVLLLAEGKILSSHLIIDAMGNFSPVVK 265 (584)
Q Consensus 201 ~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~g-----v~V~~~~G~~i~ArlVIdADG~~S~v~r 265 (584)
.||-..+-..+.+.+...|+.+..+-++.++....+. ++|.-..+++++++.||.|.|-.|--..
T Consensus 192 IvD~~~v~ls~~edF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~ngk~ee~r~~~~vtc~gl~sdr~a 261 (453)
T KOG2665|consen 192 IVDWGSVTLSFGEDFDFMGGRIYTNFRLQGIAQNKEATFSYPIVVLNGKGEEKRTKNVVTCAGLQSDRCA 261 (453)
T ss_pred eeehHHHHHHHHHHHHHhcccccccceeccchhccCCCCCCceEEecCccceeEEeEEEEeccccHhHHH
Confidence 4777778888899999999999999999998765552 2333223679999999999999887443
No 206
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.61 E-value=0.00043 Score=77.09 Aligned_cols=33 Identities=24% Similarity=0.324 Sum_probs=27.6
Q ss_pred CCccEEEEcch-HHHHHHHHHHhC-CCeEEEEcCC
Q 007945 109 GTFDVIVCGGT-LGIFIATALSFK-GLRVAIVERN 141 (584)
Q Consensus 109 ~~yDVVIVGGg-~Gl~~Aa~LAr~-GlrVlLIEr~ 141 (584)
.+||||||||| .|..+|..+|++ |.+|+||||.
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~ 36 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQ 36 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecc
Confidence 36999999976 577777789996 9999999984
No 207
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.57 E-value=0.00016 Score=80.68 Aligned_cols=32 Identities=28% Similarity=0.501 Sum_probs=28.7
Q ss_pred CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCC
Q 007945 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERN 141 (584)
Q Consensus 110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~ 141 (584)
+|||||||| |+|+++|..++++|.+|+|||+.
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~ 37 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYV 37 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCeEEEEecc
Confidence 699999996 56888888999999999999974
No 208
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=97.57 E-value=0.00085 Score=74.01 Aligned_cols=98 Identities=14% Similarity=0.215 Sum_probs=76.5
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (584)
Q Consensus 112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~ 190 (584)
.|+||||| .|+-+|..|++.|.+|.+||+.+.... .
T Consensus 177 ~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~------------------------------------------~- 213 (461)
T PRK05249 177 SLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLS------------------------------------------F- 213 (461)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCC------------------------------------------c-
Confidence 69999965 799999999999999999998741100 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChHHH
Q 007945 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVV 264 (584)
Q Consensus 191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~v~ 264 (584)
+|+ .+.+.+.+.+++.|++++.+++++++..+++++.+++.+|+++.++.||-|.|..+...
T Consensus 214 -----------~d~-~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~ 275 (461)
T PRK05249 214 -----------LDD-EISDALSYHLRDSGVTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANGRTGNTD 275 (461)
T ss_pred -----------CCH-HHHHHHHHHHHHcCCEEEECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEeecCCcccc
Confidence 011 13345556667789999999999999877778888887888999999999999987653
No 209
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=97.56 E-value=0.001 Score=62.53 Aligned_cols=42 Identities=19% Similarity=0.226 Sum_probs=35.7
Q ss_pred CCC-EEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCC
Q 007945 218 LGG-VIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGN 259 (584)
Q Consensus 218 ~G~-~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~ 259 (584)
.|+ ......+|+++...+++..|.+.+|..+.++.||-|+|+
T Consensus 113 ~~i~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 113 AGITVRHVRAEVVDIRRDDDGYRVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred CCcEEEEEeeEEEEEEEcCCcEEEEECCCCEEEeCEEEECCCC
Confidence 354 334567999999999999999999999999999999997
No 210
>PRK14727 putative mercuric reductase; Provisional
Probab=97.53 E-value=0.00056 Score=75.99 Aligned_cols=36 Identities=25% Similarity=0.395 Sum_probs=30.8
Q ss_pred CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCC-CCCC
Q 007945 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERN-TLKG 145 (584)
Q Consensus 110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~-~~~~ 145 (584)
+|||||||| +.|.++|..|++.|.+|++|||. ...|
T Consensus 16 ~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG 53 (479)
T PRK14727 16 QLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGG 53 (479)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCccee
Confidence 699999996 56888888999999999999997 4443
No 211
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=97.51 E-value=0.0011 Score=71.60 Aligned_cols=47 Identities=11% Similarity=0.088 Sum_probs=40.1
Q ss_pred HHHHHHHhC-CCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEe
Q 007945 210 IVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDA 256 (584)
Q Consensus 210 ~L~~~a~~~-G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdA 256 (584)
.|.+++.+. |..|..+.+|.+|.+++++|+|++.+..++.|+++|.+
T Consensus 210 ~la~Afa~ql~~~I~~~~~V~rI~q~~~gV~Vt~~~~~~~~ad~~i~t 257 (450)
T COG1231 210 QLAEAFAKQLGTRILLNEPVRRIDQDGDGVTVTADDVGQYVADYVLVT 257 (450)
T ss_pred HHHHHHHHHhhceEEecCceeeEEEcCCeEEEEeCCcceEEecEEEEe
Confidence 555666544 77999999999999999999999977678999999977
No 212
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.49 E-value=0.00076 Score=75.07 Aligned_cols=32 Identities=28% Similarity=0.422 Sum_probs=28.3
Q ss_pred CccEEEEcch-HHHHHHHHHHhCCCeEEEEcCC
Q 007945 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERN 141 (584)
Q Consensus 110 ~yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~ 141 (584)
+||||||||| .|..+|..+++.|.+|++||+.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~ 34 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFV 34 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 5999999965 6888888999999999999974
No 213
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=97.49 E-value=9.6e-05 Score=82.31 Aligned_cols=62 Identities=21% Similarity=0.225 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeE-EEEEcCCcEEEccEEEEecCCChHHHhHh
Q 007945 206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAA-VLLLAEGKILSSHLIIDAMGNFSPVVKQI 267 (584)
Q Consensus 206 ~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv-~V~~~~G~~i~ArlVIdADG~~S~v~rql 267 (584)
.+.+.|.+.+++.|++|+.+++|+++..+++.+ .|.+.+|+++.|+.||-|.|....+.+.+
T Consensus 230 ~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~~~~ad~vV~a~~~~~~~~~Ll 292 (493)
T TIGR02730 230 QIAESLVKGLEKHGGQIRYRARVTKIILENGKAVGVKLADGEKIYAKRIVSNATRWDTFGKLL 292 (493)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeeeEEEecCCcEEEEEeCCCCEEEcCEEEECCChHHHHHHhC
Confidence 466788899999999999999999998876644 47777888999999999999887776544
No 214
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.46 E-value=0.00037 Score=74.91 Aligned_cols=140 Identities=21% Similarity=0.269 Sum_probs=75.7
Q ss_pred CCccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCC-CCCc----ccccCCHHHH-HHHHHcCCCcccccchhhhcccCC
Q 007945 109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTL-KGRE----QEWNISRKEL-LELVESGILVEDDIDEATATKFNP 181 (584)
Q Consensus 109 ~~yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~-~~~~----r~w~Is~~~l-~~L~~lGl~~~~ele~~i~~~~~~ 181 (584)
..||||||||| +|+-+|++.||.|.+.+|+-.+-. ++.. ..-+|.+..| .+...+ +..+....+.
T Consensus 27 ~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ld~Ig~msCNPsfGGigKg~LmrEVDAL--------dGl~~rvcD~ 98 (679)
T KOG2311|consen 27 STYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLDTIGEMSCNPSFGGIGKGHLMREVDAL--------DGLCSRVCDQ 98 (679)
T ss_pred CcccEEEECCCccchHHHHHHHhcCCceEEeecccccccccccCcccCCcccceeeeeehhh--------cchHhhhhhh
Confidence 37999999987 899999999999999999976642 2211 0112332211 111111 1111111111
Q ss_pred ceeeecC-----CCcccccccccceeCHHHHHHHHHHHHHhCCC-EEEeCceEEEEEEeCCe-----E-EEEEcCCcEEE
Q 007945 182 NRCGFEG-----KGEIWVEDILNLGVSPAKLIEIVKKRFISLGG-VIFEGYSVSSICTYENA-----A-VLLLAEGKILS 249 (584)
Q Consensus 182 ~~v~f~~-----~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~-~i~~~t~v~~v~~~~~g-----v-~V~~~~G~~i~ 249 (584)
..+.|.- +..+|.+ ...+|+......+.+.+..... +|+++ .|.++...+.. + -|.+.||..|.
T Consensus 99 s~vq~k~LNrs~GPAVwg~---RAQiDR~lYkk~MQkei~st~nL~ire~-~V~dliv~~~~~~~~~~~gV~l~dgt~v~ 174 (679)
T KOG2311|consen 99 SGVQYKVLNRSKGPAVWGL---RAQIDRKLYKKNMQKEISSTPNLEIREG-AVADLIVEDPDDGHCVVSGVVLVDGTVVY 174 (679)
T ss_pred hhhhHHHhhccCCCcccCh---HHhhhHHHHHHHHHHHhccCCcchhhhh-hhhheeeccCCCCceEEEEEEEecCcEec
Confidence 1122211 1112221 1236666666666555544433 55544 45566553321 2 25566899999
Q ss_pred ccEEEEecCCC
Q 007945 250 SHLIIDAMGNF 260 (584)
Q Consensus 250 ArlVIdADG~~ 260 (584)
|+-||--+|..
T Consensus 175 a~~VilTTGTF 185 (679)
T KOG2311|consen 175 AESVILTTGTF 185 (679)
T ss_pred cceEEEeeccc
Confidence 99999999876
No 215
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=97.45 E-value=0.00034 Score=83.59 Aligned_cols=98 Identities=22% Similarity=0.322 Sum_probs=63.6
Q ss_pred CccEEEEc-chHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecC
Q 007945 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG 188 (584)
Q Consensus 110 ~yDVVIVG-Gg~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~ 188 (584)
..+|+||| ||+|+++|..|+++|++|+|+|+...++- ++ .|
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG------------------~l-----------~y--------- 347 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGG------------------VL-----------RY--------- 347 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCc------------------eE-----------Ec---------
Confidence 47999999 57899999999999999999999864331 00 00
Q ss_pred CCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCCh
Q 007945 189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 261 (584)
Q Consensus 189 ~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S 261 (584)
+ .|+ +...+ .+.+...+.+++.|+++..++.+- ..+++++......|.||-|+|...
T Consensus 348 G----IP~---~rlp~-~vi~~~i~~l~~~Gv~f~~n~~vG--------~dit~~~l~~~~yDAV~LAtGA~~ 404 (944)
T PRK12779 348 G----IPE---FRLPN-QLIDDVVEKIKLLGGRFVKNFVVG--------KTATLEDLKAAGFWKIFVGTGAGL 404 (944)
T ss_pred c----CCC---CcChH-HHHHHHHHHHHhhcCeEEEeEEec--------cEEeHHHhccccCCEEEEeCCCCC
Confidence 0 000 01112 233334566677899988776542 234554544566889999999863
No 216
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=97.45 E-value=0.00091 Score=72.69 Aligned_cols=148 Identities=16% Similarity=0.292 Sum_probs=85.7
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCccccc---C----CH------HHHHHHHH-cCCCcccccchhhh
Q 007945 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWN---I----SR------KELLELVE-SGILVEDDIDEATA 176 (584)
Q Consensus 112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~---I----s~------~~l~~L~~-lGl~~~~ele~~i~ 176 (584)
||+|||+| +|+++|..|++. ++|+||-|.+.......|. | +. +-.+.|.. -|+-++.-++.++.
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~~~sS~~AQGGIAa~~~~~Ds~~~Hv~DTL~AG~glcD~~aV~~iv~ 87 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLGESSSYWAQGGIAAALSEDDSPELHVADTLAAGAGLCDEEAVEFIVS 87 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCCCccchhhcCceEeeeCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 99999966 699999999988 9999999998764322231 1 11 11112211 12322211111110
Q ss_pred cc-----c-CCceeeecCCC---------------c-ccccccccceeCHHHHHHHHHHHHHh-CCCEEEeCceEEEEEE
Q 007945 177 TK-----F-NPNRCGFEGKG---------------E-IWVEDILNLGVSPAKLIEIVKKRFIS-LGGVIFEGYSVSSICT 233 (584)
Q Consensus 177 ~~-----~-~~~~v~f~~~~---------------~-l~~~~~l~~~vd~~~L~~~L~~~a~~-~G~~i~~~t~v~~v~~ 233 (584)
.. + -..-+.|.... + ++..+ -.-..+...|.+++.+ -++++++++.+.++..
T Consensus 88 ~~~~ai~~Li~~Gv~FDr~~~g~~~lt~EggHS~rRIlH~~~-----~TG~~I~~~L~~~v~~~p~I~v~e~~~a~~li~ 162 (518)
T COG0029 88 EAPEAIEWLIDLGVPFDRDEDGRLHLTREGGHSRRRILHAAD-----ATGKEIMTALLKKVRNRPNITVLEGAEALDLII 162 (518)
T ss_pred hHHHHHHHHHHcCCCCcCCCCCceeeeeecccCCceEEEecC-----CccHHHHHHHHHHHhcCCCcEEEecchhhhhhh
Confidence 00 0 00012222111 0 11111 1123567788888877 4789999999999998
Q ss_pred eCC-e---EEEEEcCC--cEEEccEEEEecCCChHHHh
Q 007945 234 YEN-A---AVLLLAEG--KILSSHLIIDAMGNFSPVVK 265 (584)
Q Consensus 234 ~~~-g---v~V~~~~G--~~i~ArlVIdADG~~S~v~r 265 (584)
+++ + +.+...++ .+++|+.||-|+|.-+.+=+
T Consensus 163 ~~~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG~g~ly~ 200 (518)
T COG0029 163 EDGIGVAGVLVLNRNGELGTFRAKAVVLATGGLGGLYA 200 (518)
T ss_pred cCCceEeEEEEecCCCeEEEEecCeEEEecCCCccccc
Confidence 888 3 33332333 57999999999999886654
No 217
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.43 E-value=0.00089 Score=76.96 Aligned_cols=36 Identities=28% Similarity=0.368 Sum_probs=29.7
Q ss_pred CccEEEEcch-HHHHHHHHHHhCCCeEEEEcCC--CCCC
Q 007945 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERN--TLKG 145 (584)
Q Consensus 110 ~yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~--~~~~ 145 (584)
+||||||||| .|..+|..+|+.|++|+|||+. ...|
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGG 154 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGG 154 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCcccc
Confidence 7999999965 5777777999999999999975 4444
No 218
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.34 E-value=0.0014 Score=72.37 Aligned_cols=35 Identities=26% Similarity=0.488 Sum_probs=30.0
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCC
Q 007945 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGR 146 (584)
Q Consensus 112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~ 146 (584)
+||||||| +|.++|..+++.|.+|+||||....|.
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~~GG~ 37 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEADLGGT 37 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCccccc
Confidence 79999965 688888899999999999999876653
No 219
>PRK12831 putative oxidoreductase; Provisional
Probab=97.33 E-value=0.0005 Score=76.11 Aligned_cols=36 Identities=31% Similarity=0.295 Sum_probs=31.4
Q ss_pred CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG 145 (584)
Q Consensus 110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~ 145 (584)
..||+|||| ++|+++|..|+++|++|+|+|+...++
T Consensus 140 ~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~G 176 (464)
T PRK12831 140 GKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPG 176 (464)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCC
Confidence 579999995 579999999999999999999876443
No 220
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=97.29 E-value=0.0012 Score=70.26 Aligned_cols=48 Identities=19% Similarity=0.202 Sum_probs=36.6
Q ss_pred HHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChH
Q 007945 212 KKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP 262 (584)
Q Consensus 212 ~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~ 262 (584)
.+.+.+.|++++.+ +|++++.++. +|.+.+|++++.|.||-|+|....
T Consensus 61 ~~~~~~~gv~~~~~-~v~~id~~~~--~V~~~~g~~~~yD~LviAtG~~~~ 108 (364)
T TIGR03169 61 RRLARQAGARFVIA-EATGIDPDRR--KVLLANRPPLSYDVLSLDVGSTTP 108 (364)
T ss_pred HHHHHhcCCEEEEE-EEEEEecccC--EEEECCCCcccccEEEEccCCCCC
Confidence 34455678887764 7888876655 566778889999999999998753
No 221
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.26 E-value=0.0018 Score=70.96 Aligned_cols=108 Identities=19% Similarity=0.296 Sum_probs=67.7
Q ss_pred cEEEEcch-HHHHHHHHHHhCC--CeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecC
Q 007945 112 DVIVCGGT-LGIFIATALSFKG--LRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG 188 (584)
Q Consensus 112 DVVIVGGg-~Gl~~Aa~LAr~G--lrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~ 188 (584)
.||||||| +|+++|..|++.| .+|+|||+.+... |.. .++ ..+..
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~----~~~----------~~~------------------~~~~~ 49 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVS----FGA----------CGL------------------PYFVG 49 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcce----eec----------CCC------------------ceEec
Confidence 59999965 6899898999864 5999999986422 100 000 00000
Q ss_pred CCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEc-CCcEEE--ccEEEEecCCCh
Q 007945 189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA-EGKILS--SHLIIDAMGNFS 261 (584)
Q Consensus 189 ~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~-~G~~i~--ArlVIdADG~~S 261 (584)
+ .. -+...+.....+.+.+.|++++.+++|++++.++..+.++.. +++++. +|.||-|+|...
T Consensus 50 ~--~~--------~~~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~ 115 (444)
T PRK09564 50 G--FF--------DDPNTMIARTPEEFIKSGIDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGARP 115 (444)
T ss_pred c--cc--------CCHHHhhcCCHHHHHHCCCeEEecCEEEEEECCCCEEEEEECCCCCEEEecCCEEEECCCCCC
Confidence 0 00 001111112234455678999999999999877777766542 355666 999999999875
No 222
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.25 E-value=0.0036 Score=69.06 Aligned_cols=97 Identities=20% Similarity=0.290 Sum_probs=74.2
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (584)
Q Consensus 112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~ 190 (584)
.|+||||| +|+-+|..|++.|.+|.++|+.+...+ .
T Consensus 174 ~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~------------------------------------------~- 210 (462)
T PRK06416 174 SLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILP------------------------------------------G- 210 (462)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCC------------------------------------------c-
Confidence 69999965 799999999999999999998752110 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCC---cEEEccEEEEecCCChHH
Q 007945 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG---KILSSHLIIDAMGNFSPV 263 (584)
Q Consensus 191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G---~~i~ArlVIdADG~~S~v 263 (584)
.+ ..+.+.+.+.+++.|++++.+++++++..+++++.+.+.++ +++.++.||-|.|.....
T Consensus 211 -----------~~-~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~ 274 (462)
T PRK06416 211 -----------ED-KEISKLAERALKKRGIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGRRPNT 274 (462)
T ss_pred -----------CC-HHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCccCC
Confidence 00 12234455666778999999999999988777777777665 679999999999988654
No 223
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=97.25 E-value=0.00043 Score=55.80 Aligned_cols=31 Identities=32% Similarity=0.461 Sum_probs=27.0
Q ss_pred EEcch-HHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945 115 VCGGT-LGIFIATALSFKGLRVAIVERNTLKG 145 (584)
Q Consensus 115 IVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~ 145 (584)
||||| .|+++|..|+++|++|+|+|+++.++
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~G 32 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLG 32 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccC
Confidence 78965 69999999999999999999998765
No 224
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=97.23 E-value=0.014 Score=60.80 Aligned_cols=62 Identities=21% Similarity=0.291 Sum_probs=54.4
Q ss_pred eeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEEcCCcEEEccEEEEecCCChHH
Q 007945 201 GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLAEGKILSSHLIIDAMGNFSPV 263 (584)
Q Consensus 201 ~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~-V~~~~G~~i~ArlVIdADG~~S~v 263 (584)
.+++..+...|.+.+.+.|++++.+++|+++..++++++ |.+.+| +++|+.||-|+|.+|.-
T Consensus 133 ~v~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~~~~ 195 (337)
T TIGR02352 133 HVDPRALLKALEKALEKLGVEIIEHTEVQHIEIRGEKVTAIVTPSG-DVQADQVVLAAGAWAGE 195 (337)
T ss_pred eEChHHHHHHHHHHHHHcCCEEEccceEEEEEeeCCEEEEEEcCCC-EEECCEEEEcCChhhhh
Confidence 489999999999999999999999999999998777664 666555 89999999999999874
No 225
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=97.21 E-value=0.00027 Score=73.00 Aligned_cols=33 Identities=30% Similarity=0.467 Sum_probs=27.7
Q ss_pred ccEEEEcch-HHHHHHHHHHhCC-CeEEEEcCCCC
Q 007945 111 FDVIVCGGT-LGIFIATALSFKG-LRVAIVERNTL 143 (584)
Q Consensus 111 yDVVIVGGg-~Gl~~Aa~LAr~G-lrVlLIEr~~~ 143 (584)
||+||||+| .|+++|..||+.| .+|+|||+.+.
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~ 35 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPR 35 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBS
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEcccc
Confidence 899999965 6888899999997 79999999875
No 226
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=97.20 E-value=0.002 Score=70.38 Aligned_cols=107 Identities=14% Similarity=0.118 Sum_probs=67.3
Q ss_pred CccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecC
Q 007945 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG 188 (584)
Q Consensus 110 ~yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~ 188 (584)
..+||||||| +|+.+|..|.+.+++|+|||+++..- |. + .+... -
T Consensus 10 ~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~----~~--~-~l~~~-------------------~-------- 55 (424)
T PTZ00318 10 KPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHML----FT--P-LLPQT-------------------T-------- 55 (424)
T ss_pred CCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcc----hh--h-hHHHh-------------------c--------
Confidence 5799999987 68887778887789999999876311 10 0 00000 0
Q ss_pred CCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEE--------cCCcEEEccEEEEecCCC
Q 007945 189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLL--------AEGKILSSHLIIDAMGNF 260 (584)
Q Consensus 189 ~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~--------~~G~~i~ArlVIdADG~~ 260 (584)
... .+.+.+..-+.+.+...++++. ..+|++|+.++..+++.. .+|.++.+|.||-|+|..
T Consensus 56 ~g~----------~~~~~~~~~~~~~~~~~~~~~i-~~~V~~Id~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~ 124 (424)
T PTZ00318 56 TGT----------LEFRSICEPVRPALAKLPNRYL-RAVVYDVDFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGAR 124 (424)
T ss_pred ccC----------CChHHhHHHHHHHhccCCeEEE-EEEEEEEEcCCCEEEEecccccccccCCceEecCCEEEECCCcc
Confidence 000 1111222223444545566654 468999988777776632 346689999999999998
Q ss_pred h
Q 007945 261 S 261 (584)
Q Consensus 261 S 261 (584)
.
T Consensus 125 ~ 125 (424)
T PTZ00318 125 P 125 (424)
T ss_pred c
Confidence 5
No 227
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=97.18 E-value=0.0044 Score=68.20 Aligned_cols=97 Identities=18% Similarity=0.275 Sum_probs=74.2
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (584)
Q Consensus 112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~ 190 (584)
.|+||||| .|+-+|..+++.|.+|.++++.+..-. .
T Consensus 168 ~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~------------------------------------------~- 204 (446)
T TIGR01424 168 SILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILR------------------------------------------G- 204 (446)
T ss_pred eEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCc------------------------------------------c-
Confidence 58999965 699999999999999999997642100 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChHH
Q 007945 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV 263 (584)
Q Consensus 191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~v 263 (584)
+++ .+.+.+.+.+.+.|++++.+++++++..+++++.|++.+|+++.++.||-|.|.....
T Consensus 205 -----------~d~-~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~viva~G~~pn~ 265 (446)
T TIGR01424 205 -----------FDD-DMRALLARNMEGRGIRIHPQTSLTSITKTDDGLKVTLSHGEEIVADVVLFATGRSPNT 265 (446)
T ss_pred -----------cCH-HHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeEEEEEcCCcEeecCEEEEeeCCCcCC
Confidence 011 1233445566778999999999999987777777887788899999999999987654
No 228
>PLN02507 glutathione reductase
Probab=97.17 E-value=0.0046 Score=69.11 Aligned_cols=98 Identities=15% Similarity=0.219 Sum_probs=75.3
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (584)
Q Consensus 112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~ 190 (584)
.|+||||| .|+-+|..+++.|.+|.++++.+.+-. .
T Consensus 205 ~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~------------------------------------------~- 241 (499)
T PLN02507 205 RAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLR------------------------------------------G- 241 (499)
T ss_pred eEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCc------------------------------------------c-
Confidence 69999965 699999999999999999997642100 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChHHH
Q 007945 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVV 264 (584)
Q Consensus 191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~v~ 264 (584)
+|+ .+.+.+.+.+.+.|++++.+++++++..++++++|.+.+|+++.++.||-|.|......
T Consensus 242 -----------~d~-~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~ 303 (499)
T PLN02507 242 -----------FDD-EMRAVVARNLEGRGINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGRAPNTK 303 (499)
T ss_pred -----------cCH-HHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecCCCCCC
Confidence 011 12344555667789999999999999877777888877788999999999999887653
No 229
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=97.15 E-value=0.0004 Score=77.28 Aligned_cols=55 Identities=15% Similarity=0.206 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeE-EEEEcCC-----cEEEccEEEEecCCC
Q 007945 206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAA-VLLLAEG-----KILSSHLIIDAMGNF 260 (584)
Q Consensus 206 ~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv-~V~~~~G-----~~i~ArlVIdADG~~ 260 (584)
.|-+.|.+.++++|++|+.+++|++|..+++.+ -|.+.++ +++.||.||-+.-..
T Consensus 233 ~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~ 293 (492)
T TIGR02733 233 TLSDRLVEALKRDGGNLLTGQRVTAIHTKGGRAGWVVVVDSRKQEDLNVKADDVVANLPPQ 293 (492)
T ss_pred HHHHHHHHHHHhcCCEEeCCceEEEEEEeCCeEEEEEEecCCCCceEEEECCEEEECCCHH
Confidence 356678888888899999999999999887743 2333343 579999999886653
No 230
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.15 E-value=0.00083 Score=78.79 Aligned_cols=35 Identities=26% Similarity=0.271 Sum_probs=30.7
Q ss_pred CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCC
Q 007945 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLK 144 (584)
Q Consensus 110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~ 144 (584)
..||+|||| ++|+++|..|+++|++|+|+|+.+.+
T Consensus 431 ~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~ 466 (752)
T PRK12778 431 GKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEI 466 (752)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 579999995 57999999999999999999987543
No 231
>PRK06116 glutathione reductase; Validated
Probab=97.14 E-value=0.0052 Score=67.63 Aligned_cols=98 Identities=18% Similarity=0.200 Sum_probs=74.8
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (584)
Q Consensus 112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~ 190 (584)
.|+||||| .|+-+|..|++.|.+|.++++.+..-. .
T Consensus 169 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-------------------------------~------------ 205 (450)
T PRK06116 169 RVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLR-------------------------------G------------ 205 (450)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCcc-------------------------------c------------
Confidence 69999965 799999999999999999997642100 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCe-EEEEEcCCcEEEccEEEEecCCChHHH
Q 007945 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AVLLLAEGKILSSHLIIDAMGNFSPVV 264 (584)
Q Consensus 191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~g-v~V~~~~G~~i~ArlVIdADG~~S~v~ 264 (584)
.++ .+.+.+.+.+.+.|++++.++++.++..++++ +.|.+.+|+++.++.||-|.|......
T Consensus 206 -----------~~~-~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~~~ 268 (450)
T PRK06116 206 -----------FDP-DIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGREPNTD 268 (450)
T ss_pred -----------cCH-HHHHHHHHHHHHCCcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCCCcCCC
Confidence 000 12344556667789999999999999876655 778887888999999999999876543
No 232
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.12 E-value=0.0052 Score=67.78 Aligned_cols=98 Identities=16% Similarity=0.169 Sum_probs=74.2
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (584)
Q Consensus 112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~ 190 (584)
.|+||||| .|+-+|..|++.|.+|.+|++.+.+-. .
T Consensus 168 ~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~------------------------------------------~- 204 (450)
T TIGR01421 168 RVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLR------------------------------------------S- 204 (450)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCc------------------------------------------c-
Confidence 69999976 699999999999999999998742110 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCe-EEEEEcCC-cEEEccEEEEecCCChHHH
Q 007945 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AVLLLAEG-KILSSHLIIDAMGNFSPVV 264 (584)
Q Consensus 191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~g-v~V~~~~G-~~i~ArlVIdADG~~S~v~ 264 (584)
+|+ .+.+.+.+.+.+.|++++.++.++++..++++ +.|.+.+| +++.++.||-|.|......
T Consensus 205 -----------~d~-~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~~ 268 (450)
T TIGR01421 205 -----------FDS-MISETITEEYEKEGINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRKPNTK 268 (450)
T ss_pred -----------cCH-HHHHHHHHHHHHcCCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCCCcCcc
Confidence 011 13345556677789999999999999765544 66777777 5799999999999987653
No 233
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.11 E-value=0.0052 Score=68.00 Aligned_cols=97 Identities=24% Similarity=0.338 Sum_probs=72.2
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (584)
Q Consensus 112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~ 190 (584)
.|+||||| +|+-+|..|++.|.+|.++|+.+..-+ .
T Consensus 174 ~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~------------------------------------------~- 210 (466)
T PRK07818 174 SIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALP------------------------------------------N- 210 (466)
T ss_pred eEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCC------------------------------------------c-
Confidence 69999975 799999999999999999997641100 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEc--CC--cEEEccEEEEecCCChHH
Q 007945 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA--EG--KILSSHLIIDAMGNFSPV 263 (584)
Q Consensus 191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~--~G--~~i~ArlVIdADG~~S~v 263 (584)
.| ..+...+.+.+++.|++++.+++++++..+++.+.+.+. +| +++.++.||-|.|.....
T Consensus 211 -----------~d-~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn~ 275 (466)
T PRK07818 211 -----------ED-AEVSKEIAKQYKKLGVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFAPRV 275 (466)
T ss_pred -----------cC-HHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCcccCC
Confidence 01 112344556677789999999999999876666666554 55 479999999999988765
No 234
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.08 E-value=0.008 Score=66.58 Aligned_cols=98 Identities=18% Similarity=0.272 Sum_probs=75.7
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (584)
Q Consensus 112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~ 190 (584)
.|+||||| .|+-+|..|++.|.+|.+|++.+.... .
T Consensus 179 ~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~------------------------------------------~- 215 (466)
T PRK07845 179 HLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLP------------------------------------------G- 215 (466)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCC------------------------------------------C-
Confidence 58999965 799999999999999999997642110 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChHHH
Q 007945 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVV 264 (584)
Q Consensus 191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~v~ 264 (584)
.++ .+...+.+.+.+.|++++.++++++++.+++++.|.+.+|+++.++.||-|.|......
T Consensus 216 -----------~d~-~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~~pn~~ 277 (466)
T PRK07845 216 -----------EDA-DAAEVLEEVFARRGMTVLKRSRAESVERTGDGVVVTLTDGRTVEGSHALMAVGSVPNTA 277 (466)
T ss_pred -----------CCH-HHHHHHHHHHHHCCcEEEcCCEEEEEEEeCCEEEEEECCCcEEEecEEEEeecCCcCCC
Confidence 000 12344556667789999999999999877778888887888999999999999987653
No 235
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.05 E-value=0.0046 Score=72.90 Aligned_cols=102 Identities=18% Similarity=0.218 Sum_probs=74.9
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (584)
Q Consensus 112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~ 190 (584)
.|+||||| +|+-+|..|++.|.+|.|||+.+..- . .
T Consensus 142 ~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll-------~------------------------------------~ 178 (785)
T TIGR02374 142 KAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLM-------A------------------------------------K 178 (785)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchh-------h------------------------------------h
Confidence 68999976 69999999999999999999764110 0 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChH--HHhHh
Q 007945 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP--VVKQI 267 (584)
Q Consensus 191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~--v~rql 267 (584)
. +|+ .+.+.+.+.+++.|++++.++.++++..++....|.+.+|+++.+++||-|.|.... +++..
T Consensus 179 ~----------ld~-~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~Vi~a~G~~Pn~~la~~~ 246 (785)
T TIGR02374 179 Q----------LDQ-TAGRLLQRELEQKGLTFLLEKDTVEIVGATKADRIRFKDGSSLEADLIVMAAGIRPNDELAVSA 246 (785)
T ss_pred h----------cCH-HHHHHHHHHHHHcCCEEEeCCceEEEEcCCceEEEEECCCCEEEcCEEEECCCCCcCcHHHHhc
Confidence 0 001 123445566677899999999999886554445677888999999999999998743 55544
No 236
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.05 E-value=0.0023 Score=69.18 Aligned_cols=106 Identities=14% Similarity=0.192 Sum_probs=68.3
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCC--eEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeec
Q 007945 111 FDVIVCGGT-LGIFIATALSFKGL--RVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE 187 (584)
Q Consensus 111 yDVVIVGGg-~Gl~~Aa~LAr~Gl--rVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~ 187 (584)
.+||||||| +|+.+|..|+++|. +|+|||+.+...-.+. .++..- + ... .
T Consensus 4 ~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~-~l~~~~---~---------------~~~-----~--- 56 (396)
T PRK09754 4 KTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERP-PLSKSM---L---------------LED-----S--- 56 (396)
T ss_pred CcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCC-CCCHHH---H---------------CCC-----C---
Confidence 489999975 68888889999887 7999998864332211 122110 0 000 0
Q ss_pred CCCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCCh
Q 007945 188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 261 (584)
Q Consensus 188 ~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S 261 (584)
.... . ..+. +...+.|++++.++.|+.++.+.. +|.+.+|+++.++.||-|+|...
T Consensus 57 -~~~~---~----~~~~--------~~~~~~~i~~~~g~~V~~id~~~~--~v~~~~g~~~~yd~LViATGs~~ 112 (396)
T PRK09754 57 -PQLQ---Q----VLPA--------NWWQENNVHLHSGVTIKTLGRDTR--ELVLTNGESWHWDQLFIATGAAA 112 (396)
T ss_pred -cccc---c----cCCH--------HHHHHCCCEEEcCCEEEEEECCCC--EEEECCCCEEEcCEEEEccCCCC
Confidence 0000 0 0111 123356899999999999876543 45566888999999999999886
No 237
>PRK06370 mercuric reductase; Validated
Probab=97.01 E-value=0.0077 Score=66.57 Aligned_cols=98 Identities=14% Similarity=0.154 Sum_probs=72.1
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCC
Q 007945 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK 189 (584)
Q Consensus 111 yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~ 189 (584)
-.|+||||| .|+-+|..|++.|.+|.++|+.+.... .
T Consensus 172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~------------------------------------------~ 209 (463)
T PRK06370 172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLP------------------------------------------R 209 (463)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCc------------------------------------------c
Confidence 368999965 699999999999999999998752110 0
Q ss_pred CcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEc--C-CcEEEccEEEEecCCChHH
Q 007945 190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA--E-GKILSSHLIIDAMGNFSPV 263 (584)
Q Consensus 190 ~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~--~-G~~i~ArlVIdADG~~S~v 263 (584)
.+ ..+.+.+.+.+.+.|++++.++++.++..+++++.|.+. + +.++.++.||-|.|.....
T Consensus 210 ------------~~-~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~ 273 (463)
T PRK06370 210 ------------ED-EDVAAAVREILEREGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNT 273 (463)
T ss_pred ------------cC-HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcCC
Confidence 00 012344556667789999999999999877666655542 3 4579999999999987654
No 238
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=97.00 E-value=0.0026 Score=67.03 Aligned_cols=35 Identities=34% Similarity=0.552 Sum_probs=28.2
Q ss_pred CCccEEEEcchHHHHH-HHHHHhCCCeEEEEcCCCC
Q 007945 109 GTFDVIVCGGTLGIFI-ATALSFKGLRVAIVERNTL 143 (584)
Q Consensus 109 ~~yDVVIVGGg~Gl~~-Aa~LAr~GlrVlLIEr~~~ 143 (584)
.+|||+|||||+|+.. |...|+.|++.+.||++..
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~ 73 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGT 73 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCc
Confidence 3799999998765555 5588899999999998653
No 239
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=97.00 E-value=0.0034 Score=74.81 Aligned_cols=36 Identities=31% Similarity=0.346 Sum_probs=31.2
Q ss_pred CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG 145 (584)
Q Consensus 110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~ 145 (584)
..+|+|||| ++|+++|..|+++|++|+|+|+.+.++
T Consensus 539 gKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~G 575 (1019)
T PRK09853 539 RKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAG 575 (1019)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccC
Confidence 469999995 579999999999999999999886543
No 240
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=96.98 E-value=0.0091 Score=66.28 Aligned_cols=98 Identities=18% Similarity=0.221 Sum_probs=73.2
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (584)
Q Consensus 112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~ 190 (584)
.|+||||| .|+-+|..|++.|.+|.|+|+.+.... .
T Consensus 185 ~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~------------------------------------------~- 221 (475)
T PRK06327 185 KLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLA------------------------------------------A- 221 (475)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCC------------------------------------------c-
Confidence 78999965 699999999999999999998642100 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcC--C--cEEEccEEEEecCCChHHH
Q 007945 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE--G--KILSSHLIIDAMGNFSPVV 264 (584)
Q Consensus 191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~--G--~~i~ArlVIdADG~~S~v~ 264 (584)
.| ..+.+.+.+++.+.|++++.+++++++..+++++.|.+.+ | +++.++.||-|.|..+...
T Consensus 222 -----------~d-~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~~~ 287 (475)
T PRK06327 222 -----------AD-EQVAKEAAKAFTKQGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNTD 287 (475)
T ss_pred -----------CC-HHHHHHHHHHHHHcCcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccCCccCCC
Confidence 01 1233445556667899999999999998777777776654 3 4799999999999887643
No 241
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=96.97 E-value=0.002 Score=71.12 Aligned_cols=35 Identities=31% Similarity=0.337 Sum_probs=30.8
Q ss_pred CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCC
Q 007945 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLK 144 (584)
Q Consensus 110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~ 144 (584)
..+|+|||| ++|+++|..|+++|++|+|+|+.+..
T Consensus 140 ~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~ 175 (457)
T PRK11749 140 GKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKA 175 (457)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCC
Confidence 479999996 57999999999999999999998643
No 242
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=96.96 E-value=0.00062 Score=75.92 Aligned_cols=61 Identities=20% Similarity=0.197 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHhCCCEEEeCceEEEEEEeCCe-EEEEEcCCcEEEccEEEEecCCChHHHhH
Q 007945 206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AVLLLAEGKILSSHLIIDAMGNFSPVVKQ 266 (584)
Q Consensus 206 ~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~g-v~V~~~~G~~i~ArlVIdADG~~S~v~rq 266 (584)
.+.+.|.+.+++.|++++.+++|+++..+++. +.|++.+|+++.|+.||-|.+....+.+.
T Consensus 220 ~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~g~~~~ad~VI~a~~~~~~~~~l 281 (502)
T TIGR02734 220 ALVAAMAKLAEDLGGELRLNAEVIRIETEGGRATAVHLADGERLDADAVVSNADLHHTYRRL 281 (502)
T ss_pred HHHHHHHHHHHHCCCEEEECCeEEEEEeeCCEEEEEEECCCCEEECCEEEECCcHHHHHHHh
Confidence 46678888888899999999999999888766 45788888899999999988876655543
No 243
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=96.93 E-value=0.01 Score=65.52 Aligned_cols=99 Identities=16% Similarity=0.230 Sum_probs=72.0
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCC
Q 007945 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK 189 (584)
Q Consensus 111 yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~ 189 (584)
-.|+||||| +|+-+|..|++.|.+|.|+|+.+..-. .
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~------------------------------------------~ 204 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLP------------------------------------------R 204 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCC------------------------------------------c
Confidence 369999965 799999999999999999998742100 0
Q ss_pred CcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcC---CcEEEccEEEEecCCChHHH
Q 007945 190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE---GKILSSHLIIDAMGNFSPVV 264 (584)
Q Consensus 190 ~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~---G~~i~ArlVIdADG~~S~v~ 264 (584)
.|+ .+...+.+.+.+.|++++.+++++++..+++.+.+++.+ ++++.++.||-|.|..+...
T Consensus 205 ------------~d~-~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~~ 269 (463)
T TIGR02053 205 ------------EEP-EISAAVEEALAEEGIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGRRPNTD 269 (463)
T ss_pred ------------cCH-HHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEEeECCCcCCC
Confidence 001 122344556667799999999999998766666665532 35799999999999876543
No 244
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=96.93 E-value=0.011 Score=64.70 Aligned_cols=96 Identities=11% Similarity=0.153 Sum_probs=72.0
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (584)
Q Consensus 112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~ 190 (584)
.|+||||| +|+-+|..|++.|.+|.++|+.+..-. .
T Consensus 159 ~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~------------------------------------------~- 195 (438)
T PRK07251 159 RLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILP------------------------------------------R- 195 (438)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCC------------------------------------------C-
Confidence 69999975 799999999999999999998752100 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChHH
Q 007945 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV 263 (584)
Q Consensus 191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~v 263 (584)
.+ ..+.+.+.+.+++.|++++.++++++++.+++.+.+.. +++++.++.||-|.|.....
T Consensus 196 -----------~~-~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~~~v~v~~-~g~~i~~D~viva~G~~p~~ 255 (438)
T PRK07251 196 -----------EE-PSVAALAKQYMEEDGITFLLNAHTTEVKNDGDQVLVVT-EDETYRFDALLYATGRKPNT 255 (438)
T ss_pred -----------CC-HHHHHHHHHHHHHcCCEEEcCCEEEEEEecCCEEEEEE-CCeEEEcCEEEEeeCCCCCc
Confidence 00 01223445566778999999999999987666666654 56789999999999998654
No 245
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=96.91 E-value=0.011 Score=65.16 Aligned_cols=97 Identities=20% Similarity=0.343 Sum_probs=71.3
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (584)
Q Consensus 112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~ 190 (584)
.|+||||| +|+-+|..+++.|.+|.++|+.+.... .
T Consensus 172 ~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~------------------------------------------~- 208 (458)
T PRK06912 172 SLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLP------------------------------------------G- 208 (458)
T ss_pred cEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCc------------------------------------------c-
Confidence 69999965 799999999999999999998742100 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCC-cEEEccEEEEecCCChHH
Q 007945 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG-KILSSHLIIDAMGNFSPV 263 (584)
Q Consensus 191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G-~~i~ArlVIdADG~~S~v 263 (584)
.+ ..+.+.+.+.+++.|++++.++++++++.++..+++...++ .++.+++||-|.|..+.+
T Consensus 209 -----------~d-~e~~~~l~~~L~~~GI~i~~~~~V~~i~~~~~~v~~~~~g~~~~i~~D~vivA~G~~p~~ 270 (458)
T PRK06912 209 -----------ED-EDIAHILREKLENDGVKIFTGAALKGLNSYKKQALFEYEGSIQEVNAEFVLVSVGRKPRV 270 (458)
T ss_pred -----------cc-HHHHHHHHHHHHHCCCEEEECCEEEEEEEcCCEEEEEECCceEEEEeCEEEEecCCccCC
Confidence 00 11234455667778999999999999976665555554322 379999999999988765
No 246
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=96.90 E-value=0.0018 Score=78.10 Aligned_cols=36 Identities=28% Similarity=0.410 Sum_probs=31.4
Q ss_pred CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG 145 (584)
Q Consensus 110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~ 145 (584)
..+|+|||| |+|+++|..|+++|++|+|+|+.+.++
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~G 466 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVG 466 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCc
Confidence 479999995 679999999999999999999886443
No 247
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=96.89 E-value=0.011 Score=65.12 Aligned_cols=98 Identities=18% Similarity=0.333 Sum_probs=76.4
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (584)
Q Consensus 112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~ 190 (584)
-++||||| +|+=.|..+++.|.+|+|||+.+..-+ .
T Consensus 175 ~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp------------------------------------------~- 211 (454)
T COG1249 175 SLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILP------------------------------------------G- 211 (454)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCC------------------------------------------c-
Confidence 49999975 799999999999999999998862110 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCc--EEEccEEEEecCCChHHH
Q 007945 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGK--ILSSHLIIDAMGNFSPVV 264 (584)
Q Consensus 191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~--~i~ArlVIdADG~~S~v~ 264 (584)
.|+ .+-+.+.+.+++.|..++.+++++.++..++++.+++++|. +++|+.|+-|.|+...+-
T Consensus 212 -----------~D~-ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~ 275 (454)
T COG1249 212 -----------EDP-EISKELTKQLEKGGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNTD 275 (454)
T ss_pred -----------CCH-HHHHHHHHHHHhCCeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCCccCCC
Confidence 111 23455566666667899999999999888777888887765 799999999999886554
No 248
>PTZ00052 thioredoxin reductase; Provisional
Probab=96.88 E-value=0.012 Score=65.78 Aligned_cols=97 Identities=18% Similarity=0.243 Sum_probs=73.3
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (584)
Q Consensus 112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~ 190 (584)
.|+||||| +|+-+|..|++.|.+|.|+++..... .
T Consensus 184 ~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l~-----~--------------------------------------- 219 (499)
T PTZ00052 184 KTLIVGASYIGLETAGFLNELGFDVTVAVRSIPLR-----G--------------------------------------- 219 (499)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCcEEEEEcCcccc-----c---------------------------------------
Confidence 69999975 79999999999999999998632100 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChHHH
Q 007945 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVV 264 (584)
Q Consensus 191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~v~ 264 (584)
.|+ .+.+.+.+.+++.|++++.++.+.++...++.+.|.+.+|+++.++.||-|.|..+...
T Consensus 220 -----------~d~-~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~ 281 (499)
T PTZ00052 220 -----------FDR-QCSEKVVEYMKEQGTLFLEGVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGRKPDIK 281 (499)
T ss_pred -----------CCH-HHHHHHHHHHHHcCCEEEcCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCCCCCcc
Confidence 000 12244555667789999999999998766666677777888899999999999987643
No 249
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=96.88 E-value=0.0085 Score=64.66 Aligned_cols=57 Identities=23% Similarity=0.295 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeE-EEEEcCCcEEEccEEEEecCCChH
Q 007945 206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAA-VLLLAEGKILSSHLIIDAMGNFSP 262 (584)
Q Consensus 206 ~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv-~V~~~~G~~i~ArlVIdADG~~S~ 262 (584)
+..+-+.+.+.+.|++++..|+|.++...++.+ .|.+++|.+|.||.||-|-|+.+.
T Consensus 174 ~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~Grsg~ 231 (486)
T COG2509 174 KVVKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGRSGR 231 (486)
T ss_pred HHHHHHHHHHHhcCcEEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccCcchH
Confidence 456778899999999999999999999988754 477778999999999999999875
No 250
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=96.88 E-value=0.0086 Score=71.02 Aligned_cols=103 Identities=19% Similarity=0.208 Sum_probs=75.1
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (584)
Q Consensus 112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~ 190 (584)
.++||||| +|+-+|..|++.|.+|.|||+.+..-. .
T Consensus 147 ~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~-------------------------------------------~ 183 (847)
T PRK14989 147 RGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMA-------------------------------------------E 183 (847)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchh-------------------------------------------h
Confidence 58999976 699999999999999999997641000 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCC--eEEEEEcCCcEEEccEEEEecCCChH--HHhH
Q 007945 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN--AAVLLLAEGKILSSHLIIDAMGNFSP--VVKQ 266 (584)
Q Consensus 191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~--gv~V~~~~G~~i~ArlVIdADG~~S~--v~rq 266 (584)
. +|+ ..-+.+.+++++.|++++.++.++++..+++ ...|.+.+|+++.+++||-|.|.... +++.
T Consensus 184 ~----------ld~-~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~rPn~~L~~~ 252 (847)
T PRK14989 184 Q----------LDQ-MGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIRPQDKLATQ 252 (847)
T ss_pred h----------cCH-HHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCcccCchHHhh
Confidence 0 011 1234556667788999999999999865432 34577788999999999999998765 4444
Q ss_pred hc
Q 007945 267 IR 268 (584)
Q Consensus 267 l~ 268 (584)
.+
T Consensus 253 ~G 254 (847)
T PRK14989 253 CG 254 (847)
T ss_pred cC
Confidence 43
No 251
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=96.87 E-value=0.014 Score=64.67 Aligned_cols=97 Identities=16% Similarity=0.207 Sum_probs=71.7
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (584)
Q Consensus 112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~ 190 (584)
.|+||||| +|+-+|..+++.|.+|.+||+.+..-. .
T Consensus 176 ~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~------------------------------------------~- 212 (466)
T PRK06115 176 HLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICP------------------------------------------G- 212 (466)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCC------------------------------------------C-
Confidence 68999965 799999999999999999997641100 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEc---C--CcEEEccEEEEecCCChHH
Q 007945 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA---E--GKILSSHLIIDAMGNFSPV 263 (584)
Q Consensus 191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~---~--G~~i~ArlVIdADG~~S~v 263 (584)
+|+ .+.+.+.+.+.+.|++++.+++++++..+++++.+.+. + ++++.++.||-|.|..+..
T Consensus 213 -----------~d~-~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~ 278 (466)
T PRK06115 213 -----------TDT-ETAKTLQKALTKQGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPYT 278 (466)
T ss_pred -----------CCH-HHHHHHHHHHHhcCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCcccc
Confidence 011 12344556677789999999999999876667766543 2 3579999999999988654
No 252
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=96.85 E-value=0.0097 Score=63.64 Aligned_cols=98 Identities=21% Similarity=0.321 Sum_probs=75.1
Q ss_pred ccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCC
Q 007945 111 FDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK 189 (584)
Q Consensus 111 yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~ 189 (584)
-+|+|+|| .+|+.+|..++++|++|+++|+.+.++..
T Consensus 137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~------------------------------------------ 174 (415)
T COG0446 137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQ------------------------------------------ 174 (415)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchh------------------------------------------
Confidence 59999996 57999999999999999999988643210
Q ss_pred CcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE---EEEcCCcEEEccEEEEecCCChH
Q 007945 190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV---LLLAEGKILSSHLIIDAMGNFSP 262 (584)
Q Consensus 190 ~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~---V~~~~G~~i~ArlVIdADG~~S~ 262 (584)
+. . ..+-+.+.+.+.+.|++++.++++.+++...+... +...++.++.+++++-+.|..-.
T Consensus 175 --~~-----~-----~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p~ 238 (415)
T COG0446 175 --LL-----D-----PEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGERPN 238 (415)
T ss_pred --hh-----h-----HHHHHHHHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEeeccccc
Confidence 00 0 12345566677778899999999999987766543 45667889999999999998873
No 253
>PRK07846 mycothione reductase; Reviewed
Probab=96.84 E-value=0.015 Score=64.22 Aligned_cols=98 Identities=19% Similarity=0.251 Sum_probs=71.9
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCC
Q 007945 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK 189 (584)
Q Consensus 111 yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~ 189 (584)
-.|+||||| .|+-+|..|++.|.+|.++|+.+..-. .
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~------------------------------------------~ 204 (451)
T PRK07846 167 ESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLR------------------------------------------H 204 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcccc------------------------------------------c
Confidence 369999965 799999999999999999998742100 0
Q ss_pred CcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChHHH
Q 007945 190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVV 264 (584)
Q Consensus 190 ~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~v~ 264 (584)
.|++ +.+.+.+ ..+.|++++.++++++++.+++++.|++.+|+++.++.||-|.|..+...
T Consensus 205 ------------~d~~-~~~~l~~-l~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~ 265 (451)
T PRK07846 205 ------------LDDD-ISERFTE-LASKRWDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGRVPNGD 265 (451)
T ss_pred ------------cCHH-HHHHHHH-HHhcCeEEEeCCEEEEEEEcCCEEEEEECCCcEeecCEEEEEECCccCcc
Confidence 0011 1122222 23457899999999999877667778887888999999999999987653
No 254
>PRK02106 choline dehydrogenase; Validated
Probab=96.83 E-value=0.0012 Score=74.87 Aligned_cols=33 Identities=27% Similarity=0.431 Sum_probs=30.3
Q ss_pred CccEEEEcch-HHHHHHHHHHh-CCCeEEEEcCCC
Q 007945 110 TFDVIVCGGT-LGIFIATALSF-KGLRVAIVERNT 142 (584)
Q Consensus 110 ~yDVVIVGGg-~Gl~~Aa~LAr-~GlrVlLIEr~~ 142 (584)
+||+|||||| +|+.+|..||+ .|++|+|||+.+
T Consensus 5 ~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~ 39 (560)
T PRK02106 5 EYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGG 39 (560)
T ss_pred cCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCC
Confidence 6999999965 69999999999 899999999995
No 255
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=96.82 E-value=0.01 Score=63.64 Aligned_cols=105 Identities=10% Similarity=0.137 Sum_probs=65.7
Q ss_pred ccEEEEcch-HHHHHHHHHHhC--CCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeec
Q 007945 111 FDVIVCGGT-LGIFIATALSFK--GLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE 187 (584)
Q Consensus 111 yDVVIVGGg-~Gl~~Aa~LAr~--GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~ 187 (584)
.|||||||| +|+.+|..|.+. ..+|+||++.+.....+. .++. .+ .
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y~~~-~l~~----~~--------------------------~ 51 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKP-DLSH----VF--------------------------S 51 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCcCcC-cCcH----HH--------------------------h
Confidence 589999975 688888788764 668999998763221111 0100 00 0
Q ss_pred CCCcccccccccceeCHHHHHH-HHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCCh
Q 007945 188 GKGEIWVEDILNLGVSPAKLIE-IVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 261 (584)
Q Consensus 188 ~~~~l~~~~~l~~~vd~~~L~~-~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S 261 (584)
+ ..+...+.. ...+.+++.|++++.+++|++++.+.. +|++ +++++.+|.||-|+|...
T Consensus 52 -~-----------~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~--~v~~-~~~~~~yd~LVlATG~~~ 111 (377)
T PRK04965 52 -Q-----------GQRADDLTRQSAGEFAEQFNLRLFPHTWVTDIDAEAQ--VVKS-QGNQWQYDKLVLATGASA 111 (377)
T ss_pred -C-----------CCCHHHhhcCCHHHHHHhCCCEEECCCEEEEEECCCC--EEEE-CCeEEeCCEEEECCCCCC
Confidence 0 011111111 122334567899999999999876544 4444 577899999999999875
No 256
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=96.81 E-value=0.012 Score=64.22 Aligned_cols=101 Identities=22% Similarity=0.254 Sum_probs=72.3
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCC
Q 007945 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK 189 (584)
Q Consensus 111 yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~ 189 (584)
-.|+||||| .|+-+|..|++.|.+|.++++.+..-.
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~------------------------------------------- 174 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILN------------------------------------------- 174 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCc-------------------------------------------
Confidence 379999965 699999999999999999997752100
Q ss_pred CcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChH--HHhHh
Q 007945 190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP--VVKQI 267 (584)
Q Consensus 190 ~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~--v~rql 267 (584)
.. .+ ..+.+.+.+.+++.|++++.++.+.++..++ .+ +.+.+|+++.++.||-|.|.... +.+.+
T Consensus 175 ~~----------~~-~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~-~~-v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~ 241 (427)
T TIGR03385 175 KL----------FD-EEMNQIVEEELKKHEINLRLNEEVDSIEGEE-RV-KVFTSGGVYQADMVILATGIKPNSELAKDS 241 (427)
T ss_pred cc----------cC-HHHHHHHHHHHHHcCCEEEeCCEEEEEecCC-CE-EEEcCCCEEEeCEEEECCCccCCHHHHHhc
Confidence 00 00 1223445566677899999999999986543 33 45567889999999999998743 44443
No 257
>PLN02576 protoporphyrinogen oxidase
Probab=96.79 E-value=0.0015 Score=72.71 Aligned_cols=38 Identities=34% Similarity=0.422 Sum_probs=32.9
Q ss_pred CCCccEEEEcch-HHHHHHHHHHhC-CCeEEEEcCCCCCC
Q 007945 108 VGTFDVIVCGGT-LGIFIATALSFK-GLRVAIVERNTLKG 145 (584)
Q Consensus 108 ~~~yDVVIVGGg-~Gl~~Aa~LAr~-GlrVlLIEr~~~~~ 145 (584)
..++||+||||| +|+++|..|+++ |++|+|+|+....|
T Consensus 10 ~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvG 49 (496)
T PLN02576 10 ASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVG 49 (496)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCC
Confidence 346899999976 699999999999 99999999987644
No 258
>PRK14727 putative mercuric reductase; Provisional
Probab=96.76 E-value=0.017 Score=64.23 Aligned_cols=96 Identities=25% Similarity=0.264 Sum_probs=72.2
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (584)
Q Consensus 112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~ 190 (584)
.|+||||| +|+-+|..|++.|.+|.++++..... .
T Consensus 190 ~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~l~-------------------------------------------~- 225 (479)
T PRK14727 190 SLTVIGSSVVAAEIAQAYARLGSRVTILARSTLLF-------------------------------------------R- 225 (479)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCCC-------------------------------------------c-
Confidence 69999975 69999999999999999998642100 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChHHH
Q 007945 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVV 264 (584)
Q Consensus 191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~v~ 264 (584)
.|+ .+.+.+.+.+.+.|++++.+++++++..+++.++|.+.++ ++.++.||-|.|..+...
T Consensus 226 -----------~d~-~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~~~~v~~~~g-~i~aD~VlvA~G~~pn~~ 286 (479)
T PRK14727 226 -----------EDP-LLGETLTACFEKEGIEVLNNTQASLVEHDDNGFVLTTGHG-ELRAEKLLISTGRHANTH 286 (479)
T ss_pred -----------chH-HHHHHHHHHHHhCCCEEEcCcEEEEEEEeCCEEEEEEcCC-eEEeCEEEEccCCCCCcc
Confidence 001 1234455666778999999999999987777777776544 699999999999997654
No 259
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=96.76 E-value=0.0016 Score=69.96 Aligned_cols=35 Identities=37% Similarity=0.563 Sum_probs=31.0
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG 145 (584)
Q Consensus 111 yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~ 145 (584)
|||+||||| +|+++|..|++.|.+|+|||++...+
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iG 37 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIG 37 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCC
Confidence 799999965 69999999999999999999977554
No 260
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=96.75 E-value=0.015 Score=64.52 Aligned_cols=97 Identities=21% Similarity=0.294 Sum_probs=70.2
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (584)
Q Consensus 112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~ 190 (584)
.|+||||| +|+-+|..|++.|.+|.+||+.+...+ .
T Consensus 182 ~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~------------------------------------------~- 218 (472)
T PRK05976 182 SLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILP------------------------------------------T- 218 (472)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCC------------------------------------------c-
Confidence 69999975 799999999999999999998752100 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEe-CCeEE-EEEcCC--cEEEccEEEEecCCChHH
Q 007945 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTY-ENAAV-LLLAEG--KILSSHLIIDAMGNFSPV 263 (584)
Q Consensus 191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~-~~gv~-V~~~~G--~~i~ArlVIdADG~~S~v 263 (584)
.+ ..+.+.+.+.+++.|++++.+++++++... ++++. +.+.+| +++.++.||-|.|.....
T Consensus 219 -----------~~-~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~ 283 (472)
T PRK05976 219 -----------ED-AELSKEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNT 283 (472)
T ss_pred -----------CC-HHHHHHHHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccCC
Confidence 00 112344555667789999999999998752 34443 334455 369999999999998654
No 261
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=96.74 E-value=0.0058 Score=72.07 Aligned_cols=45 Identities=24% Similarity=0.371 Sum_probs=36.9
Q ss_pred HHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCCh
Q 007945 215 FISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 261 (584)
Q Consensus 215 a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S 261 (584)
+.+.|++++.+++|++++.+. .+|.+.+|+++.+|.||-|+|...
T Consensus 64 ~~~~gv~~~~g~~V~~Id~~~--k~V~~~~g~~~~yD~LVlATGs~p 108 (785)
T TIGR02374 64 YEKHGITLYTGETVIQIDTDQ--KQVITDAGRTLSYDKLILATGSYP 108 (785)
T ss_pred HHHCCCEEEcCCeEEEEECCC--CEEEECCCcEeeCCEEEECCCCCc
Confidence 355789999999999987654 356667888999999999999864
No 262
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=96.73 E-value=0.0016 Score=73.26 Aligned_cols=35 Identities=31% Similarity=0.485 Sum_probs=31.8
Q ss_pred ccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945 111 FDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG 145 (584)
Q Consensus 111 yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~ 145 (584)
|||+|||+ ++|+++|..||++|++|++||++...+
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~ 36 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADS 36 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccC
Confidence 79999995 679999999999999999999998754
No 263
>PRK07208 hypothetical protein; Provisional
Probab=96.72 E-value=0.0017 Score=71.82 Aligned_cols=57 Identities=16% Similarity=0.298 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE--EEEc--CCc--EEEccEEEEecCCChH
Q 007945 206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV--LLLA--EGK--ILSSHLIIDAMGNFSP 262 (584)
Q Consensus 206 ~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~--V~~~--~G~--~i~ArlVIdADG~~S~ 262 (584)
.|.+.|.+.+.+.|++|+.+++|+++..++++++ +... +|+ ++.|+.||-|.-....
T Consensus 219 ~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~~~l 281 (479)
T PRK07208 219 QLWETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMPLREL 281 (479)
T ss_pred hHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCCHHHH
Confidence 3556777888888999999999999998877643 3322 343 6999999987665433
No 264
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=96.71 E-value=0.0096 Score=65.39 Aligned_cols=110 Identities=15% Similarity=0.073 Sum_probs=66.1
Q ss_pred cEEEEcch-HHHHHHHHHHhC--CCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecC
Q 007945 112 DVIVCGGT-LGIFIATALSFK--GLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG 188 (584)
Q Consensus 112 DVVIVGGg-~Gl~~Aa~LAr~--GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~ 188 (584)
.||||||| +|+.+|..|++. +.+|+|||+.+...-..+ .+. .+ +. ..+
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~~~~~-~lp-----~~--------------~~-----~~~---- 53 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANC-ALP-----YY--------------IG-----EVV---- 53 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcccccC-Ccc-----hh--------------hc-----Ccc----
Confidence 69999975 688888888876 789999999864321110 000 00 00 000
Q ss_pred CCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcC-Cc--EEEccEEEEecCCChH
Q 007945 189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE-GK--ILSSHLIIDAMGNFSP 262 (584)
Q Consensus 189 ~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~-G~--~i~ArlVIdADG~~S~ 262 (584)
... ... ..++++ +...+.|++++.+++|++++.++..+.+...+ ++ ++.+|.||-|+|....
T Consensus 54 ~~~---~~~--~~~~~~-------~~~~~~~i~v~~~~~V~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~~~ 118 (438)
T PRK13512 54 EDR---KYA--LAYTPE-------KFYDRKQITVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGASAN 118 (438)
T ss_pred CCH---HHc--ccCCHH-------HHHHhCCCEEEeCCEEEEEECCCCEEEEEECCCCcEEeeecCEEEECCCCCCC
Confidence 000 000 001111 11234689999999999998877766666432 22 4789999999998753
No 265
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=96.71 E-value=0.017 Score=64.48 Aligned_cols=98 Identities=19% Similarity=0.305 Sum_probs=70.3
Q ss_pred cEEEEcch-HHHHHHHHHH---hCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeec
Q 007945 112 DVIVCGGT-LGIFIATALS---FKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE 187 (584)
Q Consensus 112 DVVIVGGg-~Gl~~Aa~LA---r~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~ 187 (584)
.|+||||| .|+-+|..++ +.|.+|.|||+.+..-+
T Consensus 189 ~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~----------------------------------------- 227 (486)
T TIGR01423 189 RVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILR----------------------------------------- 227 (486)
T ss_pred eEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCcccc-----------------------------------------
Confidence 48899965 6888886554 34999999987642100
Q ss_pred CCCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCe-EEEEEcCCcEEEccEEEEecCCChHHH
Q 007945 188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AVLLLAEGKILSSHLIIDAMGNFSPVV 264 (584)
Q Consensus 188 ~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~g-v~V~~~~G~~i~ArlVIdADG~~S~v~ 264 (584)
.+| ..+.+.+.+.+++.|++++.++.++++..++++ ..|.+.+|+++.++.||-|.|......
T Consensus 228 -------------~~d-~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn~~ 291 (486)
T TIGR01423 228 -------------GFD-STLRKELTKQLRANGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVPRTQ 291 (486)
T ss_pred -------------ccC-HHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCCcCcc
Confidence 011 123345566677789999999999999766554 567777788999999999999887653
No 266
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=96.67 E-value=0.023 Score=62.41 Aligned_cols=96 Identities=19% Similarity=0.206 Sum_probs=72.1
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (584)
Q Consensus 112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~ 190 (584)
.|+|+||| .|+-+|..|++.|.+|.|+|+.+...+ .
T Consensus 160 ~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~------------------------------------------~- 196 (441)
T PRK08010 160 HLGILGGGYIGVEFASMFANFGSKVTILEAASLFLP------------------------------------------R- 196 (441)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCC------------------------------------------C-
Confidence 69999965 699999999999999999998641100 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChHH
Q 007945 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV 263 (584)
Q Consensus 191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~v 263 (584)
.+ ..+.+.+.+.+++.|++++.+++++++..+++.++++..++ ++.++.||-|.|..+..
T Consensus 197 -----------~~-~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~v~v~~~~g-~i~~D~vl~a~G~~pn~ 256 (441)
T PRK08010 197 -----------ED-RDIADNIATILRDQGVDIILNAHVERISHHENQVQVHSEHA-QLAVDALLIASGRQPAT 256 (441)
T ss_pred -----------cC-HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEcCC-eEEeCEEEEeecCCcCC
Confidence 00 11234456677788999999999999987766777766444 58999999999988754
No 267
>PRK14694 putative mercuric reductase; Provisional
Probab=96.64 E-value=0.023 Score=62.90 Aligned_cols=95 Identities=18% Similarity=0.253 Sum_probs=70.4
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (584)
Q Consensus 112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~ 190 (584)
.|+||||| +|+-+|..|++.|.+|.++++..... .
T Consensus 180 ~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l~-------------------------------------------~- 215 (468)
T PRK14694 180 RLLVIGASVVALELAQAFARLGSRVTVLARSRVLS-------------------------------------------Q- 215 (468)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCCC-------------------------------------------C-
Confidence 58999965 79999999999999999998632100 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChHH
Q 007945 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV 263 (584)
Q Consensus 191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~v 263 (584)
.++ .+.+.+.+.+++.|++++.++.+.++..+++.+.+.+. +.++.++.||-|.|..+..
T Consensus 216 -----------~~~-~~~~~l~~~l~~~GI~v~~~~~v~~i~~~~~~~~v~~~-~~~i~~D~vi~a~G~~pn~ 275 (468)
T PRK14694 216 -----------EDP-AVGEAIEAAFRREGIEVLKQTQASEVDYNGREFILETN-AGTLRAEQLLVATGRTPNT 275 (468)
T ss_pred -----------CCH-HHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEC-CCEEEeCEEEEccCCCCCc
Confidence 001 12344566667789999999999999876666666654 4479999999999998764
No 268
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=96.64 E-value=0.0022 Score=66.27 Aligned_cols=36 Identities=36% Similarity=0.517 Sum_probs=32.7
Q ss_pred CccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG 145 (584)
Q Consensus 110 ~yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~ 145 (584)
.||.+|||+| .|+.+|-.+++.|.+|++|||++.+|
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIG 37 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIG 37 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCC
Confidence 3899999977 59999999999999999999999876
No 269
>PRK13748 putative mercuric reductase; Provisional
Probab=96.63 E-value=0.022 Score=64.47 Aligned_cols=95 Identities=24% Similarity=0.305 Sum_probs=70.7
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (584)
Q Consensus 112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~ 190 (584)
.|+||||| +|+-+|..|++.|.+|.||++..... .
T Consensus 272 ~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~-------------------------------------------~- 307 (561)
T PRK13748 272 RLAVIGSSVVALELAQAFARLGSKVTILARSTLFF-------------------------------------------R- 307 (561)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCEEEEEecCcccc-------------------------------------------c-
Confidence 59999975 69999999999999999998742100 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChHH
Q 007945 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV 263 (584)
Q Consensus 191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~v 263 (584)
.|+ .+-+.+.+.+++.|++++.++.+.++..+++.+++.+.++ ++.++.||-|.|.....
T Consensus 308 -----------~d~-~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~~pn~ 367 (561)
T PRK13748 308 -----------EDP-AIGEAVTAAFRAEGIEVLEHTQASQVAHVDGEFVLTTGHG-ELRADKLLVATGRAPNT 367 (561)
T ss_pred -----------cCH-HHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEecCC-eEEeCEEEEccCCCcCC
Confidence 000 1223445566678999999999999987766666766444 69999999999987654
No 270
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=96.60 E-value=0.024 Score=63.11 Aligned_cols=96 Identities=15% Similarity=0.127 Sum_probs=70.6
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (584)
Q Consensus 112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~ 190 (584)
.|+||||| +|+-+|..|++.|.+|.++++....+ .
T Consensus 182 ~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l~-------------------------------------------~- 217 (484)
T TIGR01438 182 KTLVVGASYVALECAGFLAGIGLDVTVMVRSILLR-------------------------------------------G- 217 (484)
T ss_pred CEEEECCCHHHHHHHHHHHHhCCcEEEEEeccccc-------------------------------------------c-
Confidence 68999975 79999999999999999998631100 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCC---cEEEccEEEEecCCChHH
Q 007945 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG---KILSSHLIIDAMGNFSPV 263 (584)
Q Consensus 191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G---~~i~ArlVIdADG~~S~v 263 (584)
+|+ .+.+.+.+.+++.|++++.++.+.++...++.+.|++.++ +++.++.||-|.|.....
T Consensus 218 -----------~d~-~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn~ 281 (484)
T TIGR01438 218 -----------FDQ-DCANKVGEHMEEHGVKFKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGRDACT 281 (484)
T ss_pred -----------cCH-HHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecCCcCC
Confidence 000 1223445666778999999999999877666666776554 379999999999987554
No 271
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=96.56 E-value=0.025 Score=62.01 Aligned_cols=102 Identities=12% Similarity=0.166 Sum_probs=71.2
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCC
Q 007945 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK 189 (584)
Q Consensus 111 yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~ 189 (584)
-.|+||||| .|+-+|..|++.|.+|.++++.+..-.
T Consensus 150 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~------------------------------------------- 186 (444)
T PRK09564 150 KNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILP------------------------------------------- 186 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCc-------------------------------------------
Confidence 369999975 699999999999999999987641000
Q ss_pred CcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCCh--HHHhHh
Q 007945 190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS--PVVKQI 267 (584)
Q Consensus 190 ~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S--~v~rql 267 (584)
.. ++ ..+.+.+.+.+++.|++++.+++++++..++....+.+ ++.++.++.||-|.|..+ .+.+..
T Consensus 187 ~~----------~~-~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~-~~~~i~~d~vi~a~G~~p~~~~l~~~ 254 (444)
T PRK09564 187 DS----------FD-KEITDVMEEELRENGVELHLNEFVKSLIGEDKVEGVVT-DKGEYEADVVIVATGVKPNTEFLEDT 254 (444)
T ss_pred hh----------cC-HHHHHHHHHHHHHCCCEEEcCCEEEEEecCCcEEEEEe-CCCEEEcCEEEECcCCCcCHHHHHhc
Confidence 00 01 12344566677788999999999999864333333444 455799999999999864 344444
No 272
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=96.56 E-value=0.031 Score=61.67 Aligned_cols=97 Identities=21% Similarity=0.270 Sum_probs=70.5
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCC
Q 007945 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK 189 (584)
Q Consensus 111 yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~ 189 (584)
-.|+||||| .|+-+|..|++.|.+|.+||+.+.... .
T Consensus 170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~------------~------------------------------ 207 (452)
T TIGR03452 170 ESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLR------------H------------------------------ 207 (452)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcccc------------c------------------------------
Confidence 369999965 799999999999999999997642100 0
Q ss_pred CcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChHH
Q 007945 190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV 263 (584)
Q Consensus 190 ~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~v 263 (584)
++++ +.+.+.+ ..+.|++++.+++++++..+++++.|++.+|+++.++.||-|.|.....
T Consensus 208 ------------~d~~-~~~~l~~-~~~~gI~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~ 267 (452)
T TIGR03452 208 ------------LDED-ISDRFTE-IAKKKWDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGRVPNG 267 (452)
T ss_pred ------------cCHH-HHHHHHH-HHhcCCEEEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEEEEeeccCcCC
Confidence 0000 1111222 2235789999999999987777777888778899999999999987654
No 273
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=96.51 E-value=0.011 Score=62.93 Aligned_cols=36 Identities=22% Similarity=0.294 Sum_probs=31.0
Q ss_pred CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG 145 (584)
Q Consensus 110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~ 145 (584)
..+|+|||| ++|+.+|..|++.|++|+++|+.+.++
T Consensus 18 ~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~g 54 (352)
T PRK12770 18 GKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPG 54 (352)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCC
Confidence 369999996 579999999999999999999986543
No 274
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=96.50 E-value=0.019 Score=63.13 Aligned_cols=92 Identities=15% Similarity=0.226 Sum_probs=68.7
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (584)
Q Consensus 112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~ 190 (584)
.|+||||| +|+-+|..|++.|.+|.|+++.+.... .
T Consensus 150 ~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~------------~------------------------------- 186 (438)
T PRK13512 150 KALVVGAGYISLEVLENLYERGLHPTLIHRSDKINK------------L------------------------------- 186 (438)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecccccch------------h-------------------------------
Confidence 69999975 699999999999999999998642110 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChH
Q 007945 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP 262 (584)
Q Consensus 191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~ 262 (584)
++ ..+.+.+.+.+++.|++++.++++++++. + .|++.+|+++.++.||-|.|....
T Consensus 187 -----------~d-~~~~~~l~~~l~~~gI~i~~~~~v~~i~~--~--~v~~~~g~~~~~D~vl~a~G~~pn 242 (438)
T PRK13512 187 -----------MD-ADMNQPILDELDKREIPYRLNEEIDAING--N--EVTFKSGKVEHYDMIIEGVGTHPN 242 (438)
T ss_pred -----------cC-HHHHHHHHHHHHhcCCEEEECCeEEEEeC--C--EEEECCCCEEEeCEEEECcCCCcC
Confidence 00 11234455666778999999999999852 2 455667888999999999998753
No 275
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=96.45 E-value=0.003 Score=69.50 Aligned_cols=41 Identities=12% Similarity=0.215 Sum_probs=35.7
Q ss_pred CEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCC
Q 007945 220 GVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF 260 (584)
Q Consensus 220 ~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~ 260 (584)
++|+.+++|++|..++++++|++.+|+++.|+.||-|.-..
T Consensus 238 ~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~ 278 (462)
T TIGR00562 238 TKVYKGTKVTKLSHRGSNYTLELDNGVTVETDSVVVTAPHK 278 (462)
T ss_pred CeEEcCCeEEEEEecCCcEEEEECCCcEEEcCEEEECCCHH
Confidence 57899999999999888899988888889999999887643
No 276
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=96.42 E-value=0.016 Score=68.87 Aligned_cols=104 Identities=14% Similarity=0.197 Sum_probs=66.5
Q ss_pred cEEEEcch-HHHHHHHHHHh----CCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeee
Q 007945 112 DVIVCGGT-LGIFIATALSF----KGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF 186 (584)
Q Consensus 112 DVVIVGGg-~Gl~~Aa~LAr----~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f 186 (584)
.||||||| +|+.+|..|.+ .+++|+||++.+...-.+. .++. . |
T Consensus 5 kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~-~L~~-----~-------------------------~ 53 (847)
T PRK14989 5 RLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRV-HLSS-----Y-------------------------F 53 (847)
T ss_pred cEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCC-cchH-----h-------------------------H
Confidence 79999965 68888888864 3689999998875432211 0110 0 0
Q ss_pred cCCCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCCh
Q 007945 187 EGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 261 (584)
Q Consensus 187 ~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S 261 (584)
.+. . .+.+.....+.+.+.|++++.+++|++++.+. .+|.+.+|+++.++.||-|+|...
T Consensus 54 ~~~-~------------~~~l~~~~~~~~~~~gI~~~~g~~V~~Id~~~--~~V~~~~G~~i~yD~LVIATGs~p 113 (847)
T PRK14989 54 SHH-T------------AEELSLVREGFYEKHGIKVLVGERAITINRQE--KVIHSSAGRTVFYDKLIMATGSYP 113 (847)
T ss_pred cCC-C------------HHHccCCCHHHHHhCCCEEEcCCEEEEEeCCC--cEEEECCCcEEECCEEEECCCCCc
Confidence 000 0 00000011123345789999999999886643 456677888999999999999864
No 277
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=96.39 E-value=0.0029 Score=71.40 Aligned_cols=35 Identities=29% Similarity=0.459 Sum_probs=31.4
Q ss_pred CCCccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945 108 VGTFDVIVCGG-TLGIFIATALSFKGLRVAIVERNT 142 (584)
Q Consensus 108 ~~~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~ 142 (584)
..+||+||||+ .+|+++|..|+..|++|+|||+..
T Consensus 5 ~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~ 40 (542)
T COG2303 5 KMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGG 40 (542)
T ss_pred cCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCC
Confidence 44799999995 579999999999999999999985
No 278
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=96.27 E-value=0.0046 Score=67.59 Aligned_cols=55 Identities=22% Similarity=0.262 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEE-EEcCC--cEEEccEEEEecCCC
Q 007945 206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVL-LLAEG--KILSSHLIIDAMGNF 260 (584)
Q Consensus 206 ~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V-~~~~G--~~i~ArlVIdADG~~ 260 (584)
++.+.|.+++++.|++++.+++|+++..+++++++ ...++ .+++|+.||-|+|..
T Consensus 260 rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~~~V~~v~~~~g~~~~i~AD~VVLAtGrf 317 (422)
T PRK05329 260 RLQNALRRAFERLGGRIMPGDEVLGAEFEGGRVTAVWTRNHGDIPLRARHFVLATGSF 317 (422)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEeeCCceEEEECCEEEEeCCCc
Confidence 35667888888899999999999999887776654 33344 359999999999975
No 279
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=96.27 E-value=0.0099 Score=63.80 Aligned_cols=62 Identities=16% Similarity=0.112 Sum_probs=56.2
Q ss_pred ceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChH
Q 007945 200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP 262 (584)
Q Consensus 200 ~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~ 262 (584)
..+|+..+...|.+.+.+ |++++.+++|++++.+++++.|++.+|.+++|+.||.|.|.+|.
T Consensus 130 g~idp~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~~~~~~v~t~~g~~~~a~~vV~a~G~~~~ 191 (381)
T TIGR03197 130 GWLSPPQLCRALLAHAGI-RLTLHFNTEITSLERDGEGWQLLDANGEVIAASVVVLANGAQAG 191 (381)
T ss_pred cccChHHHHHHHHhccCC-CcEEEeCCEEEEEEEcCCeEEEEeCCCCEEEcCEEEEcCCcccc
Confidence 347999999999999988 99999999999999888888888888888999999999999986
No 280
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=96.27 E-value=0.041 Score=61.11 Aligned_cols=97 Identities=16% Similarity=0.193 Sum_probs=70.6
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (584)
Q Consensus 112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~ 190 (584)
.|+||||| +|+-+|..|++.|.+|.|||+.+..-+.
T Consensus 176 ~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~~------------------------------------------- 212 (471)
T PRK06467 176 RLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPA------------------------------------------- 212 (471)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCCc-------------------------------------------
Confidence 69999965 6999999999999999999987521100
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcC--C--cEEEccEEEEecCCChHHH
Q 007945 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE--G--KILSSHLIIDAMGNFSPVV 264 (584)
Q Consensus 191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~--G--~~i~ArlVIdADG~~S~v~ 264 (584)
.|+ .+.+.+.+.+.+. +.++.++.++++..+++++.+++.+ + +++.++.||-|.|..+...
T Consensus 213 -----------~d~-~~~~~~~~~l~~~-v~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~pn~~ 277 (471)
T PRK06467 213 -----------ADK-DIVKVFTKRIKKQ-FNIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGRVPNGK 277 (471)
T ss_pred -----------CCH-HHHHHHHHHHhhc-eEEEcCCEEEEEEEcCCEEEEEEEeCCCcceEEEeCEEEEeecccccCC
Confidence 001 1223344455555 7889999999998777777776643 2 4699999999999987653
No 281
>PTZ00058 glutathione reductase; Provisional
Probab=96.26 E-value=0.05 Score=61.72 Aligned_cols=98 Identities=13% Similarity=0.131 Sum_probs=70.4
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (584)
Q Consensus 112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~ 190 (584)
.|+||||| .|+-+|..+++.|.+|.++|+.+..-+
T Consensus 239 ~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il~-------------------------------------------- 274 (561)
T PTZ00058 239 RIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLR-------------------------------------------- 274 (561)
T ss_pred EEEEECCcHHHHHHHHHHHHcCCcEEEEEecccccc--------------------------------------------
Confidence 58999975 699999999999999999997641100
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCC-eEEEEEcC-CcEEEccEEEEecCCChHHH
Q 007945 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AAVLLLAE-GKILSSHLIIDAMGNFSPVV 264 (584)
Q Consensus 191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~-gv~V~~~~-G~~i~ArlVIdADG~~S~v~ 264 (584)
.+|+ .+.+.+.+.+++.|++++.++.+.++..+++ ++.+...+ ++++.++.||-|.|....+.
T Consensus 275 ----------~~d~-~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn~~ 339 (561)
T PTZ00058 275 ----------KFDE-TIINELENDMKKNNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPNTE 339 (561)
T ss_pred ----------cCCH-HHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcCCCCCcc
Confidence 0111 1234455566778999999999999976544 45555544 45799999999999875543
No 282
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=96.25 E-value=0.019 Score=61.68 Aligned_cols=66 Identities=15% Similarity=0.111 Sum_probs=53.2
Q ss_pred CHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcC-CcEEEccEEEEecCCCh-----------HHHhHhcCC
Q 007945 203 SPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE-GKILSSHLIIDAMGNFS-----------PVVKQIRSG 270 (584)
Q Consensus 203 d~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~-G~~i~ArlVIdADG~~S-----------~v~rql~~~ 270 (584)
....+.+.|..++.+.|++++.+++|+++ +++++.|.+.+ +.+++|+-||-|+|..| .++++++..
T Consensus 84 ~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~~~~~v~~~~~~~~~~a~~vIlAtGG~s~p~~Gs~g~gy~la~~lGh~ 161 (376)
T TIGR03862 84 KAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QGGTLRFETPDGQSTIEADAVVLALGGASWSQLGSDGAWQQVLDQRGVS 161 (376)
T ss_pred CHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eCCcEEEEECCCceEEecCEEEEcCCCccccccCCCcHHHHHHHHCCCc
Confidence 45667889999999999999999999998 44456677654 35799999999999987 677777643
No 283
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=96.24 E-value=0.0052 Score=73.45 Aligned_cols=36 Identities=25% Similarity=0.348 Sum_probs=31.6
Q ss_pred CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG 145 (584)
Q Consensus 110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~ 145 (584)
.+||+|||| |+|+++|..|+++|++|+|+|+.+.++
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lG 573 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPG 573 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccC
Confidence 579999995 579999999999999999999987543
No 284
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=96.19 E-value=0.0051 Score=66.61 Aligned_cols=36 Identities=36% Similarity=0.504 Sum_probs=32.3
Q ss_pred CccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG 145 (584)
Q Consensus 110 ~yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~ 145 (584)
.-+|+||||| +|+++|..||+.|++|.|+||.+..|
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiG 160 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIG 160 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCccc
Confidence 4589999976 69999999999999999999999865
No 285
>PLN02268 probable polyamine oxidase
Probab=96.19 E-value=0.0052 Score=67.18 Aligned_cols=40 Identities=20% Similarity=0.135 Sum_probs=36.0
Q ss_pred CCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEec
Q 007945 218 LGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAM 257 (584)
Q Consensus 218 ~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdAD 257 (584)
.+..|+.+++|+++...+++++|++.+|+++.|+.||-|.
T Consensus 209 ~~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~VIva~ 248 (435)
T PLN02268 209 KGLDIRLNHRVTKIVRRYNGVKVTVEDGTTFVADAAIIAV 248 (435)
T ss_pred ccCceeCCCeeEEEEEcCCcEEEEECCCcEEEcCEEEEec
Confidence 3567999999999999989999999888899999999996
No 286
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=96.17 E-value=0.0053 Score=63.59 Aligned_cols=33 Identities=42% Similarity=0.623 Sum_probs=30.6
Q ss_pred CccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 007945 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (584)
Q Consensus 110 ~yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~ 142 (584)
+|||+||||| +|+++|..|+++|.++.+|-+..
T Consensus 2 ~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQ 35 (421)
T COG3075 2 NFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQ 35 (421)
T ss_pred cccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCCh
Confidence 6999999998 59999999999999999998875
No 287
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=96.14 E-value=0.0059 Score=68.50 Aligned_cols=38 Identities=29% Similarity=0.376 Sum_probs=33.3
Q ss_pred CCCCccEEEEcch-HHHHHHHHHHhC-CCeEEEEcCCCCC
Q 007945 107 AVGTFDVIVCGGT-LGIFIATALSFK-GLRVAIVERNTLK 144 (584)
Q Consensus 107 ~~~~yDVVIVGGg-~Gl~~Aa~LAr~-GlrVlLIEr~~~~ 144 (584)
....||.|||||| +|+.+|+.|++. -++|+|||+...+
T Consensus 54 ~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 54 LDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred cccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 4557999999975 799999999986 7899999999765
No 288
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.13 E-value=0.021 Score=60.90 Aligned_cols=144 Identities=16% Similarity=0.248 Sum_probs=86.6
Q ss_pred CCccEEEEc-chHHHHHHHHHHhC-CCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCc-eee
Q 007945 109 GTFDVIVCG-GTLGIFIATALSFK-GLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPN-RCG 185 (584)
Q Consensus 109 ~~yDVVIVG-Gg~Gl~~Aa~LAr~-GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~-~v~ 185 (584)
..+|+|.|| ||.-+++|+.|... +++++.+||.+....+..--+...+++.-.-.++.+ --+|. ..+
T Consensus 4 ~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~WHpGmllegstlQv~FlkDLVT----------l~~PTs~yS 73 (436)
T COG3486 4 EVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFSWHPGMLLEGSTLQVPFLKDLVT----------LVDPTSPYS 73 (436)
T ss_pred cceeeEEEccCchHHHHHHHhccccCcceEEEecCCCCCcCCCcccCCccccccchhhhcc----------ccCCCCchH
Confidence 369999999 89899999999966 589999999986543322123222222111111111 01111 122
Q ss_pred ecC----CCcccccccc---cceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEe-CCe-EE--EEEcCCcEEEccEEE
Q 007945 186 FEG----KGEIWVEDIL---NLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTY-ENA-AV--LLLAEGKILSSHLII 254 (584)
Q Consensus 186 f~~----~~~l~~~~~l---~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~-~~g-v~--V~~~~G~~i~ArlVI 254 (584)
|-+ ..+++ ..+ +..+.|....+.|...+... -.++.+++|++|..- .|. .. +.+.++.+++||=||
T Consensus 74 FLNYL~~h~RLy--~Fl~~e~f~i~R~Ey~dY~~Waa~~l-~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~~~y~ar~lV 150 (436)
T COG3486 74 FLNYLHEHGRLY--EFLNYETFHIPRREYNDYCQWAASQL-PSLRFGEEVTDISSLDGDAVVRLFVVTANGTVYRARNLV 150 (436)
T ss_pred HHHHHHHcchHh--hhhhhhcccccHHHHHHHHHHHHhhC-CccccCCeeccccccCCcceeEEEEEcCCCcEEEeeeEE
Confidence 211 11221 111 23467888888888887766 678889999977322 222 22 445567799999999
Q ss_pred EecCCChHHHh
Q 007945 255 DAMGNFSPVVK 265 (584)
Q Consensus 255 dADG~~S~v~r 265 (584)
-..|..-.|-.
T Consensus 151 lg~G~~P~IP~ 161 (436)
T COG3486 151 LGVGTQPYIPP 161 (436)
T ss_pred EccCCCcCCCh
Confidence 99998755443
No 289
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=96.11 E-value=0.054 Score=59.23 Aligned_cols=51 Identities=20% Similarity=0.317 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCCh
Q 007945 207 LIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 261 (584)
Q Consensus 207 L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S 261 (584)
+.+.+.+.+++.|++++.++++.++. ++. |.+++|+++.+++||-|.|...
T Consensus 230 ~~~~~~~~L~~~gV~v~~~~~v~~v~--~~~--v~~~~g~~i~~d~vi~~~G~~~ 280 (424)
T PTZ00318 230 LRKYGQRRLRRLGVDIRTKTAVKEVL--DKE--VVLKDGEVIPTGLVVWSTGVGP 280 (424)
T ss_pred HHHHHHHHHHHCCCEEEeCCeEEEEe--CCE--EEECCCCEEEccEEEEccCCCC
Confidence 34555667778899999999999874 343 4567889999999999999653
No 290
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.09 E-value=0.0065 Score=67.76 Aligned_cols=36 Identities=31% Similarity=0.348 Sum_probs=31.7
Q ss_pred CccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG 145 (584)
Q Consensus 110 ~yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~ 145 (584)
..+||||||| +|+++|-.|.+.|++|+|+|.+...|
T Consensus 15 ~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvG 51 (501)
T KOG0029|consen 15 KKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVG 51 (501)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcC
Confidence 6899999976 69999999999999999999777643
No 291
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=96.09 E-value=0.0062 Score=63.12 Aligned_cols=34 Identities=38% Similarity=0.499 Sum_probs=30.8
Q ss_pred CccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCC
Q 007945 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTL 143 (584)
Q Consensus 110 ~yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~ 143 (584)
++||||||+| +|+.+|++||.+|.+|+++|....
T Consensus 5 ~~dvivvgaglaglvaa~elA~aG~~V~ildQEge 39 (552)
T COG3573 5 TADVIVVGAGLAGLVAAAELADAGKRVLILDQEGE 39 (552)
T ss_pred cccEEEECccHHHHHHHHHHHhcCceEEEEccccc
Confidence 6899999977 699999999999999999997754
No 292
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=95.97 E-value=0.029 Score=61.88 Aligned_cols=36 Identities=28% Similarity=0.320 Sum_probs=31.6
Q ss_pred CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG 145 (584)
Q Consensus 110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~ 145 (584)
.+||+|||| ++|+++|..|+++|++|+|+|+.+.++
T Consensus 133 ~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~G 169 (449)
T TIGR01316 133 HKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPG 169 (449)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence 579999996 579999999999999999999987543
No 293
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=95.96 E-value=0.006 Score=68.71 Aligned_cols=32 Identities=31% Similarity=0.340 Sum_probs=28.7
Q ss_pred cEEEEcch-HHHHHHHHHHhCC-CeEEEEcCCCC
Q 007945 112 DVIVCGGT-LGIFIATALSFKG-LRVAIVERNTL 143 (584)
Q Consensus 112 DVVIVGGg-~Gl~~Aa~LAr~G-lrVlLIEr~~~ 143 (584)
|+|||||| +|+.+|..||+.| ++|+|||+.+.
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~ 34 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGS 34 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCCC
Confidence 89999965 6999999999998 79999999863
No 294
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=95.95 E-value=0.0088 Score=65.40 Aligned_cols=51 Identities=18% Similarity=0.275 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEE-cCCcEEEccEEEEec
Q 007945 207 LIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLL-AEGKILSSHLIIDAM 257 (584)
Q Consensus 207 L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~-~~G~~i~ArlVIdAD 257 (584)
|-+.....++-.|+....++.+.++..++++..+.+ .+|++++|+.||+..
T Consensus 234 LpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~g~~~gV~s~ge~v~~k~vI~dp 285 (438)
T PF00996_consen 234 LPQAFCRLSAVYGGTYMLNRPIDEIVVDEDGKVIGVKSEGEVVKAKKVIGDP 285 (438)
T ss_dssp HHHHHHHHHHHTT-EEESS--EEEEEEETTTEEEEEEETTEEEEESEEEEEG
T ss_pred HHHHHHHHhhhcCcEEEeCCccceeeeecCCeEEEEecCCEEEEcCEEEECC
Confidence 444555556667999999999999998766554433 378899999999543
No 295
>PLN02676 polyamine oxidase
Probab=95.95 E-value=0.0084 Score=66.85 Aligned_cols=55 Identities=15% Similarity=0.183 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHhC------CCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCC
Q 007945 206 KLIEIVKKRFISL------GGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF 260 (584)
Q Consensus 206 ~L~~~L~~~a~~~------G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~ 260 (584)
.|.+.|.+.+.+. +..|..+++|++|..++++|+|++.+|++++|+.||.|....
T Consensus 225 ~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~~~~gV~V~~~~G~~~~a~~VIvtvPl~ 285 (487)
T PLN02676 225 SLVYYLAEQFLSTKSGKITDPRLKLNKVVREISYSKNGVTVKTEDGSVYRAKYVIVSVSLG 285 (487)
T ss_pred HHHHHHHhhcccccccccCCCceecCCEeeEEEEcCCcEEEEECCCCEEEeCEEEEccChH
Confidence 3445555544332 257999999999999999999999999999999999998644
No 296
>PLN02785 Protein HOTHEAD
Probab=95.93 E-value=0.0077 Score=68.64 Aligned_cols=35 Identities=34% Similarity=0.526 Sum_probs=30.5
Q ss_pred CCCccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCC
Q 007945 108 VGTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTL 143 (584)
Q Consensus 108 ~~~yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~ 143 (584)
...||+|||||| +|+.+|+.|++ +++|+|||+...
T Consensus 53 ~~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~ 88 (587)
T PLN02785 53 DSAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV 88 (587)
T ss_pred cccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence 336999999965 79999999999 699999999974
No 297
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=95.90 E-value=0.018 Score=63.87 Aligned_cols=36 Identities=31% Similarity=0.398 Sum_probs=31.8
Q ss_pred CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG 145 (584)
Q Consensus 110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~ 145 (584)
.+||+|||| ++|+++|..|+++|++|+++|+.+..+
T Consensus 143 ~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~G 179 (471)
T PRK12810 143 GKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIG 179 (471)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCC
Confidence 479999995 579999999999999999999987654
No 298
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=95.90 E-value=0.0078 Score=66.06 Aligned_cols=34 Identities=26% Similarity=0.347 Sum_probs=31.0
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG 145 (584)
Q Consensus 112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~ 145 (584)
-|+|+||| +|+++|..||.+|++|+|.|+++..|
T Consensus 2 rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~G 36 (485)
T COG3349 2 RVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLG 36 (485)
T ss_pred eEEEEcccHHHHHHHHHHHhCCCceEEEeccCccC
Confidence 48999987 69999999999999999999999865
No 299
>PLN02546 glutathione reductase
Probab=95.87 E-value=0.082 Score=59.97 Aligned_cols=98 Identities=14% Similarity=0.116 Sum_probs=69.1
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (584)
Q Consensus 112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~ 190 (584)
.|+||||| .|+-+|..|++.|.+|.|+++.+.... .
T Consensus 254 ~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~-------------------------------~------------ 290 (558)
T PLN02546 254 KIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLR-------------------------------G------------ 290 (558)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCeEEEEEecccccc-------------------------------c------------
Confidence 68999975 699999999999999999987641100 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCC-eEEEEEcCCcEEEccEEEEecCCChHHH
Q 007945 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AAVLLLAEGKILSSHLIIDAMGNFSPVV 264 (584)
Q Consensus 191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~-gv~V~~~~G~~i~ArlVIdADG~~S~v~ 264 (584)
+| ..+.+.+.+.+.+.|++++.++.+.++...++ .+.|.+.+++...++.||-|.|......
T Consensus 291 -----------~d-~~~~~~l~~~L~~~GV~i~~~~~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~Pnt~ 353 (558)
T PLN02546 291 -----------FD-EEVRDFVAEQMSLRGIEFHTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGRKPNTK 353 (558)
T ss_pred -----------cC-HHHHHHHHHHHHHCCcEEEeCCEEEEEEEcCCCEEEEEECCeEEEecCEEEEeeccccCCC
Confidence 01 12234455666778999999999999876433 4556554454455899999999987653
No 300
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.85 E-value=0.064 Score=56.19 Aligned_cols=129 Identities=19% Similarity=0.303 Sum_probs=74.0
Q ss_pred CCCccEEEEcchHHHHHHH-HHHhCCCeEEEEcCC-CCCCC---------cccccCCHHH--HHHHHHcCCCcccccchh
Q 007945 108 VGTFDVIVCGGTLGIFIAT-ALSFKGLRVAIVERN-TLKGR---------EQEWNISRKE--LLELVESGILVEDDIDEA 174 (584)
Q Consensus 108 ~~~yDVVIVGGg~Gl~~Aa-~LAr~GlrVlLIEr~-~~~~~---------~r~w~Is~~~--l~~L~~lGl~~~~ele~~ 174 (584)
+.+||.+|||||.|+.+++ ..|..|.+|.|+|-. ...+. +.-|+.+... ++.-.+-|+-.+
T Consensus 18 ~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~------ 91 (478)
T KOG0405|consen 18 VKDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPIN------ 91 (478)
T ss_pred ccccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCccc------
Confidence 4479999999998665555 667889999999976 33332 1236554321 111111121100
Q ss_pred hhcccCCceeeecCCCcccccccccce-e--CH----HHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCc-
Q 007945 175 TATKFNPNRCGFEGKGEIWVEDILNLG-V--SP----AKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGK- 246 (584)
Q Consensus 175 i~~~~~~~~v~f~~~~~l~~~~~l~~~-v--d~----~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~- 246 (584)
....| ++. + .+ .+|.......+.++++++.++..- ..++..+.|+..||+
T Consensus 92 -------~~~~f------------dW~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a~---f~~~~~v~V~~~d~~~ 149 (478)
T KOG0405|consen 92 -------EEGSF------------DWKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRAR---FVSPGEVEVEVNDGTK 149 (478)
T ss_pred -------cccCC------------cHHHHHhhhhHHHHHHHHHHHhhccccceeEEeeeEE---EcCCCceEEEecCCee
Confidence 00111 110 0 01 134444455556667777776421 234667888887874
Q ss_pred -EEEccEEEEecCCChHHH
Q 007945 247 -ILSSHLIIDAMGNFSPVV 264 (584)
Q Consensus 247 -~i~ArlVIdADG~~S~v~ 264 (584)
.++|+-+.-|.|....+-
T Consensus 150 ~~Ytak~iLIAtGg~p~~P 168 (478)
T KOG0405|consen 150 IVYTAKHILIATGGRPIIP 168 (478)
T ss_pred EEEecceEEEEeCCccCCC
Confidence 389999999999886544
No 301
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=95.79 E-value=0.015 Score=67.22 Aligned_cols=36 Identities=25% Similarity=0.394 Sum_probs=31.7
Q ss_pred CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG 145 (584)
Q Consensus 110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~ 145 (584)
..+|+|||| ++|+++|..|++.|++|+|+|+.+..+
T Consensus 327 ~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~G 363 (654)
T PRK12769 327 DKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIG 363 (654)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 469999995 679999999999999999999987644
No 302
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=95.77 E-value=0.013 Score=63.73 Aligned_cols=62 Identities=29% Similarity=0.358 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEEcCC--cEEEccEEEEecCCC-hH-HHhHh
Q 007945 206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLAEG--KILSSHLIIDAMGNF-SP-VVKQI 267 (584)
Q Consensus 206 ~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~-V~~~~G--~~i~ArlVIdADG~~-S~-v~rql 267 (584)
+|.+.|.+++++.|++++.+++|+++..++++++ |.+.++ .+++|+-||-|+|.+ |. +.+++
T Consensus 264 RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~gL~a~l 330 (419)
T TIGR03378 264 RLEEALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTRNHRDIPLRADHFVLASGSFFSNGLVAEF 330 (419)
T ss_pred HHHHHHHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEecCCccceEECCEEEEccCCCcCHHHHhhc
Confidence 3566788888888888888888988887777665 444454 478899999999988 76 55554
No 303
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=95.75 E-value=0.11 Score=60.02 Aligned_cols=97 Identities=12% Similarity=0.049 Sum_probs=66.9
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (584)
Q Consensus 112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~ 190 (584)
.|+||||| +|+-+|..|++.|.+|.+||+.+.... .
T Consensus 314 ~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~------------------------------------------~- 350 (659)
T PTZ00153 314 YMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLP------------------------------------------L- 350 (659)
T ss_pred ceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcccc------------------------------------------c-
Confidence 68999975 699999999999999999998752110 0
Q ss_pred cccccccccceeCHHHHHHHHHHHH-HhCCCEEEeCceEEEEEEeCCe--EEEEEcC-------C--------cEEEccE
Q 007945 191 EIWVEDILNLGVSPAKLIEIVKKRF-ISLGGVIFEGYSVSSICTYENA--AVLLLAE-------G--------KILSSHL 252 (584)
Q Consensus 191 ~l~~~~~l~~~vd~~~L~~~L~~~a-~~~G~~i~~~t~v~~v~~~~~g--v~V~~~~-------G--------~~i~Arl 252 (584)
+|+ .+.+.+.+.+ .+.|++++.++.|.++..++++ ++|++.+ + +++.++.
T Consensus 351 -----------~d~-eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~ 418 (659)
T PTZ00153 351 -----------LDA-DVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDS 418 (659)
T ss_pred -----------CCH-HHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCE
Confidence 011 1122233332 3578999999999999765543 5555421 1 2799999
Q ss_pred EEEecCCChHH
Q 007945 253 IIDAMGNFSPV 263 (584)
Q Consensus 253 VIdADG~~S~v 263 (584)
||-|.|....+
T Consensus 419 VlvAtGr~Pnt 429 (659)
T PTZ00153 419 CLVATGRKPNT 429 (659)
T ss_pred EEEEECcccCC
Confidence 99999988654
No 304
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=95.69 E-value=0.022 Score=63.16 Aligned_cols=36 Identities=28% Similarity=0.393 Sum_probs=31.5
Q ss_pred CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG 145 (584)
Q Consensus 110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~ 145 (584)
..+|+|||| ++|+++|..|+++|++|+++|+.+..+
T Consensus 141 ~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~g 177 (467)
T TIGR01318 141 GKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIG 177 (467)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCC
Confidence 479999995 679999999999999999999987543
No 305
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=95.67 E-value=0.012 Score=64.70 Aligned_cols=55 Identities=20% Similarity=0.233 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhCCCEEEeCceEEEEEEeCCe-E-EEEEcCCc-----EEEccEEEEecCCCh
Q 007945 207 LIEIVKKRFISLGGVIFEGYSVSSICTYENA-A-VLLLAEGK-----ILSSHLIIDAMGNFS 261 (584)
Q Consensus 207 L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~g-v-~V~~~~G~-----~i~ArlVIdADG~~S 261 (584)
+-+.|.+.+++.|++|+.+++|++|..++++ + .|++.+|+ ++.||.||-|...+.
T Consensus 215 l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~~ 276 (453)
T TIGR02731 215 LCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPVDI 276 (453)
T ss_pred HHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCHHH
Confidence 3456666676779999999999999875554 3 35665554 799999999986643
No 306
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=95.66 E-value=0.15 Score=56.31 Aligned_cols=97 Identities=21% Similarity=0.203 Sum_probs=68.7
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (584)
Q Consensus 112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~ 190 (584)
.|+||||| .|+-+|..|++.|.+|.++|+.+.....
T Consensus 171 ~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~------------------------------------------- 207 (460)
T PRK06292 171 SLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPL------------------------------------------- 207 (460)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcc-------------------------------------------
Confidence 69999975 6999999999999999999987521100
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCC-eEEEEEcC--CcEEEccEEEEecCCChHHH
Q 007945 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AAVLLLAE--GKILSSHLIIDAMGNFSPVV 264 (584)
Q Consensus 191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~-gv~V~~~~--G~~i~ArlVIdADG~~S~v~ 264 (584)
.|+ .+.+.+.+.+++. ++++.++++.++..+++ .++++..+ ++++.++.||-|.|......
T Consensus 208 -----------~d~-~~~~~~~~~l~~~-I~i~~~~~v~~i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p~~~ 271 (460)
T PRK06292 208 -----------EDP-EVSKQAQKILSKE-FKIKLGAKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATGRRPNTD 271 (460)
T ss_pred -----------hhH-HHHHHHHHHHhhc-cEEEcCCEEEEEEEcCCceEEEEEcCCceEEEEeCEEEEccCCccCCC
Confidence 001 1234445556667 89999999999976554 45554433 35799999999999875543
No 307
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=95.66 E-value=0.067 Score=54.76 Aligned_cols=63 Identities=16% Similarity=0.112 Sum_probs=42.9
Q ss_pred eeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEEc---C-CcEEEccEEEEecCCChHH
Q 007945 201 GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLA---E-GKILSSHLIIDAMGNFSPV 263 (584)
Q Consensus 201 ~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~-V~~~---~-G~~i~ArlVIdADG~~S~v 263 (584)
.|+|..|-+.+.+.+.+.|+.-+.-..|.++..+..++. |-.+ + .....++.+|-++|.+++-
T Consensus 143 qvhP~lFc~~i~sea~k~~~V~lv~Gkv~ev~dEk~r~n~v~~ae~~~ti~~~d~~~ivvsaGPWTsk 210 (380)
T KOG2852|consen 143 QVHPYLFCHFILSEAEKRGGVKLVFGKVKEVSDEKHRINSVPKAEAEDTIIKADVHKIVVSAGPWTSK 210 (380)
T ss_pred eeCHHHHHHHHHHHHHhhcCeEEEEeeeEEeecccccccccchhhhcCceEEeeeeEEEEecCCCchh
Confidence 488999999999999988754334446777753333322 2222 2 3457788999999999863
No 308
>PLN02568 polyamine oxidase
Probab=95.64 E-value=0.014 Score=65.99 Aligned_cols=50 Identities=22% Similarity=0.300 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecC
Q 007945 207 LIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMG 258 (584)
Q Consensus 207 L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG 258 (584)
|.+.|.+.+. +..|+.+++|++|...+++++|++.+|++++|+.||-+.=
T Consensus 244 Li~~La~~L~--~~~I~ln~~V~~I~~~~~~v~V~~~dG~~~~aD~VIvTvP 293 (539)
T PLN02568 244 VIEALASVLP--PGTIQLGRKVTRIEWQDEPVKLHFADGSTMTADHVIVTVS 293 (539)
T ss_pred HHHHHHhhCC--CCEEEeCCeEEEEEEeCCeEEEEEcCCCEEEcCEEEEcCC
Confidence 4444444431 3479999999999999999999999998999999998753
No 309
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=95.53 E-value=0.03 Score=54.79 Aligned_cols=35 Identities=31% Similarity=0.505 Sum_probs=29.8
Q ss_pred ccEEEEcch-HHHHHHHHHHhC--CCeEEEEcCCCCCC
Q 007945 111 FDVIVCGGT-LGIFIATALSFK--GLRVAIVERNTLKG 145 (584)
Q Consensus 111 yDVVIVGGg-~Gl~~Aa~LAr~--GlrVlLIEr~~~~~ 145 (584)
.||||||+| +|+++|+..+++ .++|++||....|+
T Consensus 77 sDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPG 114 (328)
T KOG2960|consen 77 SDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPG 114 (328)
T ss_pred cceEEECCCccccceeeeeeccCCCceEEEEEeeecCC
Confidence 699999965 799999988843 89999999887665
No 310
>PLN02852 ferredoxin-NADP+ reductase
Probab=95.51 E-value=0.022 Score=63.42 Aligned_cols=36 Identities=33% Similarity=0.426 Sum_probs=31.5
Q ss_pred CccEEEEcc-hHHHHHHHHHHh--CCCeEEEEcCCCCCC
Q 007945 110 TFDVIVCGG-TLGIFIATALSF--KGLRVAIVERNTLKG 145 (584)
Q Consensus 110 ~yDVVIVGG-g~Gl~~Aa~LAr--~GlrVlLIEr~~~~~ 145 (584)
...|+|||| |+|+.+|..|++ .|++|.|+||.+.++
T Consensus 26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pg 64 (491)
T PLN02852 26 PLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPF 64 (491)
T ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCc
Confidence 578999995 679999999986 799999999998765
No 311
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=95.48 E-value=0.014 Score=64.82 Aligned_cols=54 Identities=15% Similarity=0.172 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhCCCEEEeCceEEEEEEeC--Ce---EE-EEEcCC---cEEEccEEEEecCCC
Q 007945 207 LIEIVKKRFISLGGVIFEGYSVSSICTYE--NA---AV-LLLAEG---KILSSHLIIDAMGNF 260 (584)
Q Consensus 207 L~~~L~~~a~~~G~~i~~~t~v~~v~~~~--~g---v~-V~~~~G---~~i~ArlVIdADG~~ 260 (584)
+.+.|.+.+++.|++|+.+++|++|..++ ++ ++ |.+.+| +++.||.||-|....
T Consensus 221 l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~ 283 (474)
T TIGR02732 221 LTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVP 283 (474)
T ss_pred HHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChH
Confidence 34557778888999999999999998764 22 32 345433 569999999999876
No 312
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=95.47 E-value=0.032 Score=64.54 Aligned_cols=36 Identities=31% Similarity=0.337 Sum_probs=31.6
Q ss_pred CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG 145 (584)
Q Consensus 110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~ 145 (584)
..+|+|||| ++|+++|..|++.|++|+|+|+.+..+
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~G 229 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAG 229 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence 479999995 679999999999999999999987643
No 313
>PRK10262 thioredoxin reductase; Provisional
Probab=95.43 E-value=0.12 Score=54.00 Aligned_cols=93 Identities=16% Similarity=0.106 Sum_probs=63.9
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (584)
Q Consensus 112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~ 190 (584)
.|+||||| .|+-+|..|++.|.+|.++++.+.... .
T Consensus 148 ~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~~------------------------------------------~- 184 (321)
T PRK10262 148 KVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRA------------------------------------------E- 184 (321)
T ss_pred EEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccCC------------------------------------------C-
Confidence 79999976 699999999999999999998641100 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeE-EEEEcC------CcEEEccEEEEecCCCh
Q 007945 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAA-VLLLAE------GKILSSHLIIDAMGNFS 261 (584)
Q Consensus 191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv-~V~~~~------G~~i~ArlVIdADG~~S 261 (584)
..+.+.+.+++.+.|++++.++.++++..+++++ .|++.+ .+++.++.||-|.|...
T Consensus 185 --------------~~~~~~~~~~l~~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p 248 (321)
T PRK10262 185 --------------KILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSP 248 (321)
T ss_pred --------------HHHHHHHHhhccCCCeEEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEECCEEEEEeCCcc
Confidence 0112334555566788999999999986554332 244332 13699999998888654
No 314
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=95.40 E-value=0.041 Score=56.96 Aligned_cols=111 Identities=23% Similarity=0.255 Sum_probs=64.9
Q ss_pred CCCCccEEEEcchH-HHHHHHHHHhC-CC-eEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCce
Q 007945 107 AVGTFDVIVCGGTL-GIFIATALSFK-GL-RVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNR 183 (584)
Q Consensus 107 ~~~~yDVVIVGGg~-Gl~~Aa~LAr~-Gl-rVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~ 183 (584)
...+|.|+|||||. |+.+|+.+.++ |- +|.+||....---...|.+-.+.+..|...+ + .
T Consensus 36 ~~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~HyYQPgfTLvGgGl~~l~~sr-------------r-~--- 98 (446)
T KOG3851|consen 36 ARKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHYYQPGFTLVGGGLKSLDSSR-------------R-K--- 98 (446)
T ss_pred cccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhcccCcceEEeccchhhhhhcc-------------C-c---
Confidence 34579999999875 88889988854 43 7999987652111123544444443332111 0 0
Q ss_pred eeecCCCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChHH
Q 007945 184 CGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV 263 (584)
Q Consensus 184 v~f~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~v 263 (584)
...+ +|. + ..++.+++. + .+++.-+|.+.+|++|+.|++|-|+|..-..
T Consensus 99 -----~a~l-iP~------~----a~wi~ekv~-------------~--f~P~~N~v~t~gg~eIsYdylviA~Giql~y 147 (446)
T KOG3851|consen 99 -----QASL-IPK------G----ATWIKEKVK-------------E--FNPDKNTVVTRGGEEISYDYLVIAMGIQLDY 147 (446)
T ss_pred -----cccc-ccC------C----cHHHHHHHH-------------h--cCCCcCeEEccCCcEEeeeeEeeeeeceecc
Confidence 0000 010 0 022233332 2 3456667778899999999999999998655
Q ss_pred Hh
Q 007945 264 VK 265 (584)
Q Consensus 264 ~r 265 (584)
-+
T Consensus 148 ~~ 149 (446)
T KOG3851|consen 148 GK 149 (446)
T ss_pred ch
Confidence 43
No 315
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=95.39 E-value=0.092 Score=51.90 Aligned_cols=116 Identities=20% Similarity=0.299 Sum_probs=77.7
Q ss_pred CccEEEEc-chHHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecC
Q 007945 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG 188 (584)
Q Consensus 110 ~yDVVIVG-Gg~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~ 188 (584)
.-.|+||| ||++-++|..+|++-++-+|+|--...+ |.+.. . +.+..+++ .|++
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~------i~pGG--Q-----LtTTT~ve------------NfPG 62 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANG------IAPGG--Q-----LTTTTDVE------------NFPG 62 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccC------cCCCc--e-----eeeeeccc------------cCCC
Confidence 45899999 6789999999999999999999543221 11100 0 00000111 1111
Q ss_pred CCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCCh
Q 007945 189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 261 (584)
Q Consensus 189 ~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S 261 (584)
.|+ ++.-..|.+.+++++.+.|.+|+..| |.+++....-.+|.+ +.+.++|+-||-|+|+..
T Consensus 63 -----FPd----gi~G~~l~d~mrkqs~r~Gt~i~tEt-Vskv~~sskpF~l~t-d~~~v~~~avI~atGAsA 124 (322)
T KOG0404|consen 63 -----FPD----GITGPELMDKMRKQSERFGTEIITET-VSKVDLSSKPFKLWT-DARPVTADAVILATGASA 124 (322)
T ss_pred -----CCc----ccccHHHHHHHHHHHHhhcceeeeee-hhhccccCCCeEEEe-cCCceeeeeEEEecccce
Confidence 011 13334677889999999999987654 788888777777766 666899999999999864
No 316
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=95.38 E-value=0.059 Score=58.35 Aligned_cols=105 Identities=20% Similarity=0.262 Sum_probs=63.8
Q ss_pred ccEEEEcch-HHHHHHHHHHhC--CCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeec
Q 007945 111 FDVIVCGGT-LGIFIATALSFK--GLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE 187 (584)
Q Consensus 111 yDVVIVGGg-~Gl~~Aa~LAr~--GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~ 187 (584)
--|||+||| .|+.+|..|+++ +.+|+||||+..-- |. ..+-+ ...-.
T Consensus 4 ~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl----~~---plL~e--------------va~g~--------- 53 (405)
T COG1252 4 KRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHL----FT---PLLYE--------------VATGT--------- 53 (405)
T ss_pred ceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccc----cc---hhhhh--------------hhcCC---------
Confidence 469999998 577777799986 49999999987421 10 00100 00000
Q ss_pred CCCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCCh
Q 007945 188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 261 (584)
Q Consensus 188 ~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S 261 (584)
++...+.--+.+.+.+.+..-+...+|++|+.+... |+++++.++..|.+|-|.|..+
T Consensus 54 --------------l~~~~i~~p~~~~~~~~~~v~~~~~~V~~ID~~~k~--V~~~~~~~i~YD~LVvalGs~~ 111 (405)
T COG1252 54 --------------LSESEIAIPLRALLRKSGNVQFVQGEVTDIDRDAKK--VTLADLGEISYDYLVVALGSET 111 (405)
T ss_pred --------------CChhheeccHHHHhcccCceEEEEEEEEEEcccCCE--EEeCCCccccccEEEEecCCcC
Confidence 111111111223333344344555678898777654 5555677899999999999885
No 317
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=95.30 E-value=0.065 Score=58.05 Aligned_cols=58 Identities=22% Similarity=0.406 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCc-EEEccEEEEecCCC-hHHHhHh
Q 007945 206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGK-ILSSHLIIDAMGNF-SPVVKQI 267 (584)
Q Consensus 206 ~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~-~i~ArlVIdADG~~-S~v~rql 267 (584)
++.....+.+++.|++++.++.|++++ ++++++ ++|. +|.|+.+|=|.|.. |++.+.+
T Consensus 210 ~l~~~a~~~L~~~GV~v~l~~~Vt~v~--~~~v~~--~~g~~~I~~~tvvWaaGv~a~~~~~~l 269 (405)
T COG1252 210 KLSKYAERALEKLGVEVLLGTPVTEVT--PDGVTL--KDGEEEIPADTVVWAAGVRASPLLKDL 269 (405)
T ss_pred HHHHHHHHHHHHCCCEEEcCCceEEEC--CCcEEE--ccCCeeEecCEEEEcCCCcCChhhhhc
Confidence 455566667788899999999999974 455544 4565 59999999999976 5577764
No 318
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=95.28 E-value=0.035 Score=63.06 Aligned_cols=36 Identities=33% Similarity=0.326 Sum_probs=31.3
Q ss_pred CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG 145 (584)
Q Consensus 110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~ 145 (584)
.-+|+|||+ ++|+++|..|++.|++|+++|+.+..+
T Consensus 137 g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~G 173 (564)
T PRK12771 137 GKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLG 173 (564)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 358999995 689999999999999999999987654
No 319
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=95.27 E-value=0.03 Score=64.60 Aligned_cols=36 Identities=28% Similarity=0.388 Sum_probs=31.8
Q ss_pred CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG 145 (584)
Q Consensus 110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~ 145 (584)
..+|+|||| ++|+++|..|++.|++|+++|+.+..+
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~G 346 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIG 346 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCC
Confidence 468999995 679999999999999999999998654
No 320
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=95.21 E-value=0.015 Score=62.62 Aligned_cols=60 Identities=22% Similarity=0.249 Sum_probs=49.2
Q ss_pred HHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEEcCCcEEEccEEEEecCCChHHHhH
Q 007945 207 LIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLAEGKILSSHLIIDAMGNFSPVVKQ 266 (584)
Q Consensus 207 L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~-V~~~~G~~i~ArlVIdADG~~S~v~rq 266 (584)
+-.++.+-++++|++|+.+..|.+|..+++.++ |.++||++++++.||-=.+.+-.+-+.
T Consensus 266 vs~aia~~~~~~GaeI~tka~Vq~Illd~gka~GV~L~dG~ev~sk~VvSNAt~~~Tf~kL 326 (561)
T KOG4254|consen 266 VSFAIAEGAKRAGAEIFTKATVQSILLDSGKAVGVRLADGTEVRSKIVVSNATPWDTFEKL 326 (561)
T ss_pred HHHHHHHHHHhccceeeehhhhhheeccCCeEEEEEecCCcEEEeeeeecCCchHHHHHHh
Confidence 345778888899999999999999998886554 888999999999999877766666443
No 321
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=95.17 E-value=0.024 Score=58.98 Aligned_cols=34 Identities=29% Similarity=0.360 Sum_probs=29.1
Q ss_pred CCCccEEEEcchH-HHHHHHHHHhCCCeEEEEcCC
Q 007945 108 VGTFDVIVCGGTL-GIFIATALSFKGLRVAIVERN 141 (584)
Q Consensus 108 ~~~yDVVIVGGg~-Gl~~Aa~LAr~GlrVlLIEr~ 141 (584)
+.+||.||||||. |+++|-..|..|.+|+++|--
T Consensus 17 sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV 51 (503)
T KOG4716|consen 17 SYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFV 51 (503)
T ss_pred cCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeec
Confidence 4489999999875 777788999999999999943
No 322
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.09 E-value=0.2 Score=54.85 Aligned_cols=46 Identities=17% Similarity=0.150 Sum_probs=35.9
Q ss_pred EEEeCceEEEEEEe--CCeEEEEEcCCcEEEccEEEEecCCChHHHhH
Q 007945 221 VIFEGYSVSSICTY--ENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQ 266 (584)
Q Consensus 221 ~i~~~t~v~~v~~~--~~gv~V~~~~G~~i~ArlVIdADG~~S~v~rq 266 (584)
.....++++++... ..+..+...+|....|+.+|-|+|+.-+....
T Consensus 122 v~~~~~~a~~~~~~~n~~~~~~~~~~g~~~~ad~~Vlatgh~~~~~~~ 169 (474)
T COG4529 122 VRTIREEATSVRQDTNAGGYLVTTADGPSEIADIIVLATGHSAPPADP 169 (474)
T ss_pred eeEEeeeeecceeccCCceEEEecCCCCeeeeeEEEEeccCCCCCcch
Confidence 45566778887776 45677888889999999999999998766644
No 323
>PLN02529 lysine-specific histone demethylase 1
Probab=95.09 E-value=0.027 Score=65.60 Aligned_cols=38 Identities=16% Similarity=0.329 Sum_probs=32.1
Q ss_pred CCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEec
Q 007945 219 GGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAM 257 (584)
Q Consensus 219 G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdAD 257 (584)
+..|+.+++|++|...+++|+|++ ++++++||.||-+-
T Consensus 366 ~L~IrLnt~V~~I~~~~dGVtV~t-~~~~~~AD~VIVTV 403 (738)
T PLN02529 366 GVPIFYGKTVDTIKYGNDGVEVIA-GSQVFQADMVLCTV 403 (738)
T ss_pred cCCEEcCCceeEEEEcCCeEEEEE-CCEEEEcCEEEECC
Confidence 456999999999999999999875 55689999999763
No 324
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=95.06 E-value=0.16 Score=55.28 Aligned_cols=96 Identities=23% Similarity=0.324 Sum_probs=73.1
Q ss_pred EEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCCc
Q 007945 113 VIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKGE 191 (584)
Q Consensus 113 VVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~~ 191 (584)
|+++||| +|+-+|+.|.-.+.+|++|++.+.+- .+
T Consensus 216 vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~-------~~------------------------------------- 251 (478)
T KOG1336|consen 216 VVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLL-------PR------------------------------------- 251 (478)
T ss_pred EEEECchHHHHHHHHHHHhcCceEEEEccCccch-------hh-------------------------------------
Confidence 9999988 79999999998899999998764211 00
Q ss_pred ccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCe--EEEEEcCCcEEEccEEEEecCCChH
Q 007945 192 IWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA--AVLLLAEGKILSSHLIIDAMGNFSP 262 (584)
Q Consensus 192 l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~g--v~V~~~~G~~i~ArlVIdADG~~S~ 262 (584)
+.. ..+.+...+.+++.|++++.++.+.++.-++++ ..|.+.+|+++.|++||-..|..+.
T Consensus 252 lf~----------~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~ 314 (478)
T KOG1336|consen 252 LFG----------PSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKPN 314 (478)
T ss_pred hhh----------HHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeeccccc
Confidence 000 122344556667789999999999999877743 4588889999999999999887753
No 325
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=94.97 E-value=0.22 Score=56.03 Aligned_cols=89 Identities=20% Similarity=0.184 Sum_probs=62.5
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (584)
Q Consensus 112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~ 190 (584)
.|+||||| .|+-+|..|++.|.+|.++|+.+... .
T Consensus 354 ~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~--------------------------------------------~ 389 (515)
T TIGR03140 354 DVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELK--------------------------------------------A 389 (515)
T ss_pred EEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCC--------------------------------------------h
Confidence 79999976 69999999999999999998653100 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHh-CCCEEEeCceEEEEEEeCCeEE-EEEcC---C--cEEEccEEEEecCCCh
Q 007945 191 EIWVEDILNLGVSPAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAAV-LLLAE---G--KILSSHLIIDAMGNFS 261 (584)
Q Consensus 191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~-~G~~i~~~t~v~~v~~~~~gv~-V~~~~---G--~~i~ArlVIdADG~~S 261 (584)
...+.+.+.+ .|++++.++.++++..+++.++ |++.+ + +++.++.||-|.|...
T Consensus 390 -----------------~~~l~~~l~~~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~P 450 (515)
T TIGR03140 390 -----------------DKVLQDKLKSLPNVDILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQIGLVP 450 (515)
T ss_pred -----------------hHHHHHHHhcCCCCEEEECCeeEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEEEeCCcC
Confidence 0112233333 5889999999999876545443 55543 2 4699999999988764
No 326
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=94.70 E-value=0.039 Score=64.72 Aligned_cols=37 Identities=27% Similarity=0.445 Sum_probs=32.1
Q ss_pred CCccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945 109 GTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG 145 (584)
Q Consensus 109 ~~yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~ 145 (584)
...||+||||| +|+++|..|++.|++|+|+|++..+|
T Consensus 237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~G 274 (808)
T PLN02328 237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPG 274 (808)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCC
Confidence 35899999976 69999999999999999999987553
No 327
>PRK13984 putative oxidoreductase; Provisional
Probab=94.69 E-value=0.072 Score=61.01 Aligned_cols=36 Identities=25% Similarity=0.313 Sum_probs=31.7
Q ss_pred CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLKG 145 (584)
Q Consensus 110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~~ 145 (584)
..+|+|||+ ++|+++|..|+++|++|+|+|+.+.++
T Consensus 283 ~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~g 319 (604)
T PRK13984 283 NKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPG 319 (604)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 579999995 679999999999999999999987653
No 328
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.68 E-value=0.37 Score=54.91 Aligned_cols=59 Identities=12% Similarity=0.245 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHhCCCEEEeCceEEEEEEeCC-eE---EE-EEcCCc--EEEccEEEEecCCChHH
Q 007945 205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AA---VL-LLAEGK--ILSSHLIIDAMGNFSPV 263 (584)
Q Consensus 205 ~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~-gv---~V-~~~~G~--~i~ArlVIdADG~~S~v 263 (584)
..+...|.+++.+.|++++.++.++++..+++ .+ ++ ...+|+ .|+|+-||-|+|..+.+
T Consensus 126 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~ 191 (570)
T PRK05675 126 HALLHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLATGGAGRI 191 (570)
T ss_pred HHHHHHHHHHHhccCCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEECCCCcccc
Confidence 46788888888888999999999999987644 33 22 223454 68999999999998754
No 329
>PLN02487 zeta-carotene desaturase
Probab=94.53 E-value=0.039 Score=62.59 Aligned_cols=54 Identities=17% Similarity=0.158 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhCCCEEEeCceEEEEEEeC--Ce---E-EEEEc---CCcEEEccEEEEecCCC
Q 007945 207 LIEIVKKRFISLGGVIFEGYSVSSICTYE--NA---A-VLLLA---EGKILSSHLIIDAMGNF 260 (584)
Q Consensus 207 L~~~L~~~a~~~G~~i~~~t~v~~v~~~~--~g---v-~V~~~---~G~~i~ArlVIdADG~~ 260 (584)
|-+.+.+.+++.|++|+.+++|.++..+. ++ + -|++. +++++.||.||-|.+..
T Consensus 297 l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~ 359 (569)
T PLN02487 297 LSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVP 359 (569)
T ss_pred HHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHH
Confidence 55667778888999999999999998873 32 2 24552 34579999999999977
No 330
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=94.49 E-value=0.14 Score=57.43 Aligned_cols=69 Identities=16% Similarity=0.227 Sum_probs=56.0
Q ss_pred ceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEEc---CC--cEEEccEEEEecCCChH-HHhHhc
Q 007945 200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLA---EG--KILSSHLIIDAMGNFSP-VVKQIR 268 (584)
Q Consensus 200 ~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~-V~~~---~G--~~i~ArlVIdADG~~S~-v~rql~ 268 (584)
..+|+.++...+.+.+.++|++++..++|+++..+++.+. |++. +| .+|+|+.||.|.|.+|. +.+.++
T Consensus 123 g~vdp~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~g 198 (516)
T TIGR03377 123 GTVDPFRLVAANVLDAQEHGARIFTYTKVTGLIREGGRVTGVKVEDHKTGEEERIEAQVVINAAGIWAGRIAEYAG 198 (516)
T ss_pred cEECHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCEEEECCCcchHHHHHhcC
Confidence 3589999999999999999999999999999988777643 4442 24 37999999999999998 444444
No 331
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=94.46 E-value=0.045 Score=64.97 Aligned_cols=33 Identities=21% Similarity=0.427 Sum_probs=29.5
Q ss_pred CccEEEEc-chHHHHHHHHHHhCCCeEEEEcCCC
Q 007945 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNT 142 (584)
Q Consensus 110 ~yDVVIVG-Gg~Gl~~Aa~LAr~GlrVlLIEr~~ 142 (584)
...|+||| ||+|+++|..|+++|++|+|+|+.+
T Consensus 383 gKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~ 416 (1028)
T PRK06567 383 NYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLK 416 (1028)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccc
Confidence 46999999 5689999999999999999999853
No 332
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=94.42 E-value=0.18 Score=55.03 Aligned_cols=25 Identities=24% Similarity=0.379 Sum_probs=19.3
Q ss_pred CCCEEEeCCCCCCcCCCCCCchhhHH
Q 007945 387 FNRILQFGDASGIQSPVSFGGFGSLT 412 (584)
Q Consensus 387 ~~rvlLvGDAA~~v~PltGgG~g~~l 412 (584)
.+|+..+|-.-+-.||+. +|-|+++
T Consensus 382 ~~Nl~a~G~vL~G~d~~~-~gcG~GV 406 (419)
T TIGR03378 382 IENLYAIGAVLGGYDPIF-EGCGSGV 406 (419)
T ss_pred cccceEechhhcCCChHh-cCCCchh
Confidence 688999999988889975 5555443
No 333
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=94.39 E-value=0.14 Score=53.44 Aligned_cols=110 Identities=17% Similarity=0.135 Sum_probs=59.9
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCc--ccccC----CHHHH---HHHHHcCCCccccc---chhhhc
Q 007945 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGRE--QEWNI----SRKEL---LELVESGILVEDDI---DEATAT 177 (584)
Q Consensus 111 yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~--r~w~I----s~~~l---~~L~~lGl~~~~el---e~~i~~ 177 (584)
--|.||||| +|+-+|+.+|++|++|.|.|-++....+ ..-++ +-.++ ..-...|++.+ |+ .++|..
T Consensus 4 ~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k~TpaH~td~fAELVCSNSlr~~~~~navGlLk~-EMR~lgSlii~ 82 (439)
T COG1206 4 QPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVKGTPAHKTDNFAELVCSNSLRSDALTNAVGLLKA-EMRLLGSLIIE 82 (439)
T ss_pred CceEEEcccccccHHHHHHHHcCCcEEEEEcccccCCCcccccchhhheeccccccchhhhhhHHHHH-HHHHhhhHHhh
Confidence 358899988 5888899999999999999977654321 11110 00000 01111222211 11 111111
Q ss_pred ccCCceeeecCCCcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEE
Q 007945 178 KFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSI 231 (584)
Q Consensus 178 ~~~~~~v~f~~~~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v 231 (584)
. . ..-.+|..-.++|||+.|-+..-++++++...-....+|+.+
T Consensus 83 ~--------A--d~~~VPAGgALAVDR~~Fs~~vT~~l~~hpli~vireEvt~i 126 (439)
T COG1206 83 A--------A--DKHRVPAGGALAVDRDGFSQAVTEKLENHPLIEVIREEVTEI 126 (439)
T ss_pred h--------h--hhccCCCCceeeecHhHHHHHHHHHHhcCCCEEEEccccccC
Confidence 1 0 011223333467999999999999998775533333345444
No 334
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=94.31 E-value=0.37 Score=51.13 Aligned_cols=52 Identities=17% Similarity=0.191 Sum_probs=41.4
Q ss_pred HHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCCh
Q 007945 210 IVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 261 (584)
Q Consensus 210 ~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S 261 (584)
.+...+...|.+|+.+++|++|..+++++.|.+.+|+++.||.||-|.....
T Consensus 214 ~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~ 265 (450)
T PF01593_consen 214 ALALAAEELGGEIRLNTPVTRIEREDGGVTVTTEDGETIEADAVISAVPPSV 265 (450)
T ss_dssp HHHHHHHHHGGGEESSEEEEEEEEESSEEEEEETTSSEEEESEEEE-S-HHH
T ss_pred HHHHHHhhcCceeecCCcceeccccccccccccccceEEecceeeecCchhh
Confidence 3344444457799999999999999999999999999999999997765443
No 335
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=94.19 E-value=0.53 Score=48.03 Aligned_cols=90 Identities=19% Similarity=0.125 Sum_probs=61.3
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCC
Q 007945 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK 189 (584)
Q Consensus 111 yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~ 189 (584)
-.|+|+||| .|+-+|..|++.|.+|.++++.+... . .
T Consensus 142 ~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~------~------------------------------------~ 179 (300)
T TIGR01292 142 KEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFR------A------------------------------------E 179 (300)
T ss_pred CEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccC------c------------------------------------C
Confidence 379999965 69999999999999999998753100 0 0
Q ss_pred CcccccccccceeCHHHHHHHHHHHHHhC-CCEEEeCceEEEEEEeCCeEEEEEc---C--CcEEEccEEEEecCCCh
Q 007945 190 GEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLA---E--GKILSSHLIIDAMGNFS 261 (584)
Q Consensus 190 ~~l~~~~~l~~~vd~~~L~~~L~~~a~~~-G~~i~~~t~v~~v~~~~~gv~V~~~---~--G~~i~ArlVIdADG~~S 261 (584)
..+.+.+.+. |++++.++.++++..++....+++. + ++++.++.||-|.|...
T Consensus 180 -------------------~~~~~~l~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~~ 238 (300)
T TIGR01292 180 -------------------KILLDRLRKNPNIEFLWNSTVKEIVGDNKVEGVKIKNTVTGEEEELKVDGVFIAIGHEP 238 (300)
T ss_pred -------------------HHHHHHHHhCCCeEEEeccEEEEEEccCcEEEEEEEecCCCceEEEEccEEEEeeCCCC
Confidence 0122334445 8889999999988754422223332 2 35799999999999664
No 336
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=94.13 E-value=0.059 Score=60.77 Aligned_cols=55 Identities=22% Similarity=0.221 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHhCCCEEEeCceEEEEEEe-CC--e-EE-EEEc-CCc-----EEEccEEEEecCCC
Q 007945 206 KLIEIVKKRFISLGGVIFEGYSVSSICTY-EN--A-AV-LLLA-EGK-----ILSSHLIIDAMGNF 260 (584)
Q Consensus 206 ~L~~~L~~~a~~~G~~i~~~t~v~~v~~~-~~--g-v~-V~~~-~G~-----~i~ArlVIdADG~~ 260 (584)
.+..-|.+.+++.|++++.+++|+++..+ ++ + |+ |.+. +|+ ...+|+||-|.|..
T Consensus 227 SLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~ 292 (576)
T PRK13977 227 SLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSI 292 (576)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcC
Confidence 46677888999999999999999999885 22 2 22 3332 222 36799999999865
No 337
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=93.89 E-value=0.078 Score=59.15 Aligned_cols=35 Identities=29% Similarity=0.322 Sum_probs=30.9
Q ss_pred CccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCCC
Q 007945 110 TFDVIVCGG-TLGIFIATALSFKGLRVAIVERNTLK 144 (584)
Q Consensus 110 ~yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~~ 144 (584)
..+|+|||| ++|+++|..|+++|++|+|+|+.+.+
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~ 178 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRC 178 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 369999995 57999999999999999999998754
No 338
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=93.86 E-value=0.062 Score=58.97 Aligned_cols=58 Identities=16% Similarity=0.248 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChHHHhHhc
Q 007945 207 LIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQIR 268 (584)
Q Consensus 207 L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~v~rql~ 268 (584)
|.+.|.+++. +.++.+++|+.+..+..+..+...+|.++.++-||- ++....+.+.++
T Consensus 217 l~~al~~~l~---~~i~~~~~V~~i~~~~~~~~~~~~~g~~~~~D~VI~-t~p~~~l~~ll~ 274 (444)
T COG1232 217 LIEALAEKLE---AKIRTGTEVTKIDKKGAGKTIVDVGGEKITADGVIS-TAPLPELARLLG 274 (444)
T ss_pred HHHHHHHHhh---hceeecceeeEEEEcCCccEEEEcCCceEEcceEEE-cCCHHHHHHHcC
Confidence 3344444443 459999999999998777787777888999999984 444444554443
No 339
>PLN02976 amine oxidase
Probab=93.84 E-value=0.072 Score=65.32 Aligned_cols=38 Identities=26% Similarity=0.396 Sum_probs=32.3
Q ss_pred CCCCccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCC
Q 007945 107 AVGTFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLK 144 (584)
Q Consensus 107 ~~~~yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~ 144 (584)
.+..+||+||||| +|+++|+.|+++|++|+|+|+...+
T Consensus 690 ~~~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~v 728 (1713)
T PLN02976 690 SVDRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRI 728 (1713)
T ss_pred cCCCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCC
Confidence 4446899999965 6999999999999999999987654
No 340
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=93.83 E-value=0.65 Score=48.45 Aligned_cols=56 Identities=18% Similarity=0.138 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhCC--CEEEeCceEEEEEEeCCeEE-EEEc--CCc--EEEccEEEEecCCChH
Q 007945 207 LIEIVKKRFISLG--GVIFEGYSVSSICTYENAAV-LLLA--EGK--ILSSHLIIDAMGNFSP 262 (584)
Q Consensus 207 L~~~L~~~a~~~G--~~i~~~t~v~~v~~~~~gv~-V~~~--~G~--~i~ArlVIdADG~~S~ 262 (584)
|...|.+.+.+.. +.|..+++|+++..+++.|. |... +|+ .+.++-||-|+|..+-
T Consensus 145 L~~~l~k~as~~pe~~ki~~nskvv~il~n~gkVsgVeymd~sgek~~~~~~~VVlatGGf~y 207 (477)
T KOG2404|consen 145 LSTRLKKKASENPELVKILLNSKVVDILRNNGKVSGVEYMDASGEKSKIIGDAVVLATGGFGY 207 (477)
T ss_pred HHHHHHHhhhcChHHHhhhhcceeeeeecCCCeEEEEEEEcCCCCccceecCceEEecCCcCc
Confidence 3444455554443 48899999999987777554 4433 343 5888889999998873
No 341
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=93.64 E-value=0.63 Score=49.47 Aligned_cols=49 Identities=27% Similarity=0.359 Sum_probs=38.6
Q ss_pred HHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCCh
Q 007945 209 EIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS 261 (584)
Q Consensus 209 ~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S 261 (584)
..+.+.+++.|++++.++++.++. ++ .|.+.+|+++.++.||-|.|...
T Consensus 195 ~~~~~~l~~~gV~v~~~~~v~~i~--~~--~v~~~~g~~i~~D~vi~a~G~~p 243 (364)
T TIGR03169 195 RLVLRLLARRGIEVHEGAPVTRGP--DG--ALILADGRTLPADAILWATGARA 243 (364)
T ss_pred HHHHHHHHHCCCEEEeCCeeEEEc--CC--eEEeCCCCEEecCEEEEccCCCh
Confidence 445566777899999999998874 33 45666888999999999999765
No 342
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=93.62 E-value=0.59 Score=51.59 Aligned_cols=32 Identities=31% Similarity=0.292 Sum_probs=27.6
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCC-eEEEEcCCC
Q 007945 111 FDVIVCGGT-LGIFIATALSFKGL-RVAIVERNT 142 (584)
Q Consensus 111 yDVVIVGGg-~Gl~~Aa~LAr~Gl-rVlLIEr~~ 142 (584)
-.|+||||| .|+-+|..|++.|. +|.++++..
T Consensus 274 ~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~ 307 (457)
T PRK11749 274 KRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG 307 (457)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 379999976 69999999999998 899998763
No 343
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=93.59 E-value=0.1 Score=57.72 Aligned_cols=54 Identities=35% Similarity=0.369 Sum_probs=43.3
Q ss_pred ccEEEEc-chHHHHHHHHHHhCCCeEEEEcCCCCCCCccc---------ccCCHHHHHHHHHcC
Q 007945 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQE---------WNISRKELLELVESG 164 (584)
Q Consensus 111 yDVVIVG-Gg~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~---------w~Is~~~l~~L~~lG 164 (584)
-.|.||| ||+|+++|..|+++|+.|++.|+.+.++.--. -.|....++.|...|
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~G 187 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSG 187 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcC
Confidence 5899999 57899999999999999999999998653111 135566788888887
No 344
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=93.56 E-value=0.43 Score=50.79 Aligned_cols=130 Identities=18% Similarity=0.085 Sum_probs=68.2
Q ss_pred CccEEEEcch-HHHHHHHHHHhCC--CeEEEEcCCCCCCCccc-----ccCCHHHHHHHHHcCCCcccccchhhhcccCC
Q 007945 110 TFDVIVCGGT-LGIFIATALSFKG--LRVAIVERNTLKGREQE-----WNISRKELLELVESGILVEDDIDEATATKFNP 181 (584)
Q Consensus 110 ~yDVVIVGGg-~Gl~~Aa~LAr~G--lrVlLIEr~~~~~~~r~-----w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~ 181 (584)
...|+||||| .+.-++..|.+++ .+|.+|=|++.-..... .-.+++-++.+..+.- +....+..+.
T Consensus 190 ~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~s~f~ne~f~P~~v~~f~~l~~----~~R~~~l~~~-- 263 (341)
T PF13434_consen 190 GKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDDSPFVNEIFSPEYVDYFYSLPD----EERRELLREQ-- 263 (341)
T ss_dssp -EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB----CCHHGGGSHHHHHHHHTS-H----HHHHHHHHHT--
T ss_pred CCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCccccchhhhcCchhhhhhhcCCH----HHHHHHHHHh--
Confidence 5789999977 6888888888766 48999988874321100 0133333333322110 0000000000
Q ss_pred ceeeecCCCcccccccccc-eeCHHHHHHH---HH-HHHHhC-CCEEEeCceEEEEEEeCC-eEEEEEcC-----CcEEE
Q 007945 182 NRCGFEGKGEIWVEDILNL-GVSPAKLIEI---VK-KRFISL-GGVIFEGYSVSSICTYEN-AAVLLLAE-----GKILS 249 (584)
Q Consensus 182 ~~v~f~~~~~l~~~~~l~~-~vd~~~L~~~---L~-~~a~~~-G~~i~~~t~v~~v~~~~~-gv~V~~~~-----G~~i~ 249 (584)
..+++ +|+++.+.+. +. +++... -..++..++++++...++ ++.+++.+ ..++.
T Consensus 264 --------------~~~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~ 329 (341)
T PF13434_consen 264 --------------RHTNYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGDGGVRLTLRHRQTGEEETLE 329 (341)
T ss_dssp --------------GGGTSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES-SSEEEEEEETTT--EEEEE
T ss_pred --------------HhhcCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCCCEEEEEEEECCCCCeEEEe
Confidence 00122 3666544332 22 233222 358999999999999885 88888865 24799
Q ss_pred ccEEEEecCC
Q 007945 250 SHLIIDAMGN 259 (584)
Q Consensus 250 ArlVIdADG~ 259 (584)
+|.||-|+|.
T Consensus 330 ~D~VilATGy 339 (341)
T PF13434_consen 330 VDAVILATGY 339 (341)
T ss_dssp ESEEEE---E
T ss_pred cCEEEEcCCc
Confidence 9999999995
No 345
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=93.53 E-value=0.67 Score=51.13 Aligned_cols=31 Identities=29% Similarity=0.276 Sum_probs=28.1
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 007945 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (584)
Q Consensus 112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~ 142 (584)
.|+||||| .|+-+|..|++.|.+|.++++..
T Consensus 274 ~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~ 305 (449)
T TIGR01316 274 SVVVIGGGNTAVDSARTALRLGAEVHCLYRRT 305 (449)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence 79999976 79999999999999999999874
No 346
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=93.27 E-value=0.62 Score=51.04 Aligned_cols=34 Identities=15% Similarity=0.076 Sum_probs=25.0
Q ss_pred CccEEEEcchHHHHHH-HHHH----hCCCeEEEEcCCCC
Q 007945 110 TFDVIVCGGTLGIFIA-TALS----FKGLRVAIVERNTL 143 (584)
Q Consensus 110 ~yDVVIVGGg~Gl~~A-a~LA----r~GlrVlLIEr~~~ 143 (584)
..|.|+.+|-+|+-.| ..++ +.|.+|.+++..+.
T Consensus 216 ~~~~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~pp 254 (422)
T PRK05329 216 DAEAVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPP 254 (422)
T ss_pred CCCEEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCC
Confidence 4688877777777776 3333 56999999998764
No 347
>PTZ00188 adrenodoxin reductase; Provisional
Probab=93.13 E-value=0.13 Score=57.14 Aligned_cols=36 Identities=19% Similarity=0.301 Sum_probs=30.0
Q ss_pred CccEEEEcc-hHHHHHHHHH-HhCCCeEEEEcCCCCCC
Q 007945 110 TFDVIVCGG-TLGIFIATAL-SFKGLRVAIVERNTLKG 145 (584)
Q Consensus 110 ~yDVVIVGG-g~Gl~~Aa~L-Ar~GlrVlLIEr~~~~~ 145 (584)
..-|+|||| |+|+.+|..| ++.|++|.|+||.+.++
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pg 76 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPY 76 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCc
Confidence 457999995 6799998865 47799999999998765
No 348
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=92.89 E-value=0.75 Score=51.09 Aligned_cols=31 Identities=23% Similarity=0.237 Sum_probs=24.5
Q ss_pred cEEEEcch-HHHHHHHHHHhCCC-eEEEEcCCC
Q 007945 112 DVIVCGGT-LGIFIATALSFKGL-RVAIVERNT 142 (584)
Q Consensus 112 DVVIVGGg-~Gl~~Aa~LAr~Gl-rVlLIEr~~ 142 (584)
.|+||||| +|+-+|..+.+.|. +|.+++...
T Consensus 283 ~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~ 315 (471)
T PRK12810 283 HVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMP 315 (471)
T ss_pred EEEEECCcHHHHHHHHHHHHcCCCeEEEccccC
Confidence 69999976 69999988888886 688766543
No 349
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=92.88 E-value=0.85 Score=51.28 Aligned_cols=89 Identities=17% Similarity=0.162 Sum_probs=61.5
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (584)
Q Consensus 112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~ 190 (584)
+|+||||| .|+-+|..|+..|.+|.|+++.+.... .
T Consensus 353 ~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~~------------------------------------------~- 389 (517)
T PRK15317 353 RVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELKA------------------------------------------D- 389 (517)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCEEEEEEECccccc------------------------------------------c-
Confidence 79999976 699999999999999999987642100 0
Q ss_pred cccccccccceeCHHHHHHHHHHHHHh-CCCEEEeCceEEEEEEeCCeEE-EEEc---CC--cEEEccEEEEecCCCh
Q 007945 191 EIWVEDILNLGVSPAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAAV-LLLA---EG--KILSSHLIIDAMGNFS 261 (584)
Q Consensus 191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~-~G~~i~~~t~v~~v~~~~~gv~-V~~~---~G--~~i~ArlVIdADG~~S 261 (584)
..+.+++.+ .|++++.++.++++..+++.++ |++. +| +++.++.|+-|.|...
T Consensus 390 ------------------~~l~~~l~~~~gI~i~~~~~v~~i~~~~g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~~p 449 (517)
T PRK15317 390 ------------------QVLQDKLRSLPNVTIITNAQTTEVTGDGDKVTGLTYKDRTTGEEHHLELEGVFVQIGLVP 449 (517)
T ss_pred ------------------HHHHHHHhcCCCcEEEECcEEEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeECCcc
Confidence 011223333 4789999999999876544443 4443 23 3588999998888764
No 350
>PLN03000 amine oxidase
Probab=92.29 E-value=0.17 Score=59.84 Aligned_cols=36 Identities=25% Similarity=0.397 Sum_probs=31.7
Q ss_pred CccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG 145 (584)
Q Consensus 110 ~yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~ 145 (584)
..||+||||| +|+++|..|++.|++|+|+|++..++
T Consensus 184 ~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riG 220 (881)
T PLN03000 184 KSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPG 220 (881)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCC
Confidence 5899999975 69999999999999999999987654
No 351
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=92.26 E-value=0.99 Score=47.96 Aligned_cols=31 Identities=26% Similarity=0.291 Sum_probs=26.8
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCe-EEEEcCCC
Q 007945 112 DVIVCGGT-LGIFIATALSFKGLR-VAIVERNT 142 (584)
Q Consensus 112 DVVIVGGg-~Gl~~Aa~LAr~Glr-VlLIEr~~ 142 (584)
.|+|+||| .|+-+|..|++.|.+ |.|+++..
T Consensus 174 ~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~ 206 (352)
T PRK12770 174 KVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT 206 (352)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 69999965 799999999999997 99998764
No 352
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.21 E-value=0.16 Score=54.17 Aligned_cols=38 Identities=34% Similarity=0.433 Sum_probs=33.0
Q ss_pred CCccEEEEc-chHHHHHHHHHHhCCCeEEEEcCCCCCCC
Q 007945 109 GTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGR 146 (584)
Q Consensus 109 ~~yDVVIVG-Gg~Gl~~Aa~LAr~GlrVlLIEr~~~~~~ 146 (584)
..||||||| |=+=..+|++.+|.|.+|+-+|+++.-|.
T Consensus 7 ~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg 45 (547)
T KOG4405|consen 7 EEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGG 45 (547)
T ss_pred hhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCC
Confidence 369999999 54688888899999999999999998764
No 353
>PRK12831 putative oxidoreductase; Provisional
Probab=92.15 E-value=1.4 Score=49.01 Aligned_cols=32 Identities=31% Similarity=0.299 Sum_probs=28.3
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 007945 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (584)
Q Consensus 111 yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~ 142 (584)
-.|+||||| .|+-+|..|++.|.+|.+++|..
T Consensus 282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~ 314 (464)
T PRK12831 282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS 314 (464)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence 379999976 69999999999999999998764
No 354
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=92.11 E-value=0.51 Score=52.62 Aligned_cols=35 Identities=40% Similarity=0.660 Sum_probs=31.6
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG 145 (584)
Q Consensus 111 yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~ 145 (584)
||||||||| .|+++|+.||++|++|+|+||+..+|
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~G 36 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPG 36 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCC
Confidence 799999977 59999999999999999999998764
No 355
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=91.69 E-value=0.23 Score=52.48 Aligned_cols=36 Identities=33% Similarity=0.597 Sum_probs=32.5
Q ss_pred CccEEEEc-chHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKG 145 (584)
Q Consensus 110 ~yDVVIVG-Gg~Gl~~Aa~LAr~GlrVlLIEr~~~~~ 145 (584)
.|||+|+| |-.=+.++++|+..|.+|++|||++.-|
T Consensus 6 ~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG 42 (434)
T COG5044 6 LYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYG 42 (434)
T ss_pred cccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccC
Confidence 69999999 5569999999999999999999998755
No 356
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=91.69 E-value=0.17 Score=54.56 Aligned_cols=34 Identities=32% Similarity=0.357 Sum_probs=28.8
Q ss_pred CccEEEEcch-HHHHHHHHHHhCCCeEEE--EcCCCC
Q 007945 110 TFDVIVCGGT-LGIFIATALSFKGLRVAI--VERNTL 143 (584)
Q Consensus 110 ~yDVVIVGGg-~Gl~~Aa~LAr~GlrVlL--IEr~~~ 143 (584)
..+|+||||| .|+++|+.|++++.+|.| +|..+-
T Consensus 11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~R 47 (491)
T KOG1276|consen 11 GMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPR 47 (491)
T ss_pred cceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCc
Confidence 4699999987 599999999999888754 898764
No 357
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=91.64 E-value=24 Score=38.64 Aligned_cols=36 Identities=25% Similarity=0.369 Sum_probs=31.6
Q ss_pred CccEEEEcch-HHHHHHHHHHhC----CCeEEEEcCCCCCC
Q 007945 110 TFDVIVCGGT-LGIFIATALSFK----GLRVAIVERNTLKG 145 (584)
Q Consensus 110 ~yDVVIVGGg-~Gl~~Aa~LAr~----GlrVlLIEr~~~~~ 145 (584)
..||+||||| +|+++|..|+++ |++|+|+|+++..|
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~G 42 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVG 42 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCc
Confidence 4699999976 699999999998 99999999987653
No 358
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=91.46 E-value=0.27 Score=45.33 Aligned_cols=30 Identities=27% Similarity=0.551 Sum_probs=26.8
Q ss_pred EEEEcc-hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945 113 VIVCGG-TLGIFIATALSFKGLRVAIVERNT 142 (584)
Q Consensus 113 VVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~ 142 (584)
|+|+|+ .+|+..|+.|++.|.+|.++.|..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 689995 579999999999999999998764
No 359
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=91.33 E-value=1.5 Score=53.31 Aligned_cols=95 Identities=18% Similarity=0.147 Sum_probs=65.0
Q ss_pred cEEEEcc-hHHHHHHHHHHhCCC-eEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCC
Q 007945 112 DVIVCGG-TLGIFIATALSFKGL-RVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK 189 (584)
Q Consensus 112 DVVIVGG-g~Gl~~Aa~LAr~Gl-rVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~ 189 (584)
.|+|+|| ..|+-+|..|++.|. .|+|+|+.+.. .
T Consensus 319 ~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~--------~------------------------------------ 354 (985)
T TIGR01372 319 RIVVATNNDSAYRAAADLLAAGIAVVAIIDARADV--------S------------------------------------ 354 (985)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCceEEEEccCcch--------h------------------------------------
Confidence 6899996 579999999999995 57888765310 0
Q ss_pred CcccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEc----CCcEEEccEEEEecCCChH--H
Q 007945 190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA----EGKILSSHLIIDAMGNFSP--V 263 (584)
Q Consensus 190 ~~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~----~G~~i~ArlVIdADG~~S~--v 263 (584)
..+.+++++.|+.++.++.++.+..++....|++. +++++.|+.|+-+.|.... +
T Consensus 355 -------------------~~l~~~L~~~GV~i~~~~~v~~i~g~~~v~~V~l~~~~g~~~~i~~D~V~va~G~~Pnt~L 415 (985)
T TIGR01372 355 -------------------PEARAEARELGIEVLTGHVVAATEGGKRVSGVAVARNGGAGQRLEADALAVSGGWTPVVHL 415 (985)
T ss_pred -------------------HHHHHHHHHcCCEEEcCCeEEEEecCCcEEEEEEEecCCceEEEECCEEEEcCCcCchhHH
Confidence 01223456678899999988887644332223332 3568999999999998764 5
Q ss_pred HhHhcC
Q 007945 264 VKQIRS 269 (584)
Q Consensus 264 ~rql~~ 269 (584)
.++++.
T Consensus 416 ~~~lg~ 421 (985)
T TIGR01372 416 FSQRGG 421 (985)
T ss_pred HHhcCC
Confidence 566653
No 360
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=90.85 E-value=0.51 Score=54.16 Aligned_cols=102 Identities=20% Similarity=0.326 Sum_probs=71.1
Q ss_pred EEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCCc
Q 007945 113 VIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKGE 191 (584)
Q Consensus 113 VVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~~ 191 (584)
.+||||| +|+=+|..|...|++|.|++=.+. | ++..
T Consensus 148 avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~----------------l----------MerQ----------------- 184 (793)
T COG1251 148 AVVIGGGLLGLEAARGLKDLGMEVTVVHIAPT----------------L----------MERQ----------------- 184 (793)
T ss_pred cEEEccchhhhHHHHHHHhCCCceEEEeecch----------------H----------HHHh-----------------
Confidence 4788877 699999999999999999963321 1 0000
Q ss_pred ccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCCChH--HHhHhc
Q 007945 192 IWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP--VVKQIR 268 (584)
Q Consensus 192 l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~~S~--v~rql~ 268 (584)
+|+. =-+.|...+.+.|..++.+...+.+..++.-..|.++||..+.|++||=|+|..-. ++++.+
T Consensus 185 ----------LD~~-ag~lL~~~le~~Gi~~~l~~~t~ei~g~~~~~~vr~~DG~~i~ad~VV~a~GIrPn~ela~~aG 252 (793)
T COG1251 185 ----------LDRT-AGRLLRRKLEDLGIKVLLEKNTEEIVGEDKVEGVRFADGTEIPADLVVMAVGIRPNDELAKEAG 252 (793)
T ss_pred ----------hhhH-HHHHHHHHHHhhcceeecccchhhhhcCcceeeEeecCCCcccceeEEEecccccccHhHHhcC
Confidence 0000 02345556667788888887777776544445688999999999999999998754 666654
No 361
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=90.80 E-value=0.29 Score=45.95 Aligned_cols=30 Identities=27% Similarity=0.389 Sum_probs=26.9
Q ss_pred EEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 007945 113 VIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (584)
Q Consensus 113 VVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~ 142 (584)
|.|+||| .|.++|..|+++|++|.|..|.+
T Consensus 2 I~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred EEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 7899976 59999999999999999998864
No 362
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=90.77 E-value=0.13 Score=54.98 Aligned_cols=36 Identities=39% Similarity=0.618 Sum_probs=32.4
Q ss_pred CccEEEEc-chHHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKG 145 (584)
Q Consensus 110 ~yDVVIVG-Gg~Gl~~Aa~LAr~GlrVlLIEr~~~~~ 145 (584)
.|||||.| |..=+.+++.|+..|-+|+.|||++.-|
T Consensus 4 eyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG 40 (440)
T KOG1439|consen 4 EYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYG 40 (440)
T ss_pred ceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCC
Confidence 59999999 6779999999999999999999998643
No 363
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=90.05 E-value=1.2 Score=49.65 Aligned_cols=33 Identities=30% Similarity=0.495 Sum_probs=29.7
Q ss_pred EEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945 113 VIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG 145 (584)
Q Consensus 113 VVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~ 145 (584)
||||||| .|+++|+.||++|++|+|+|++..+|
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~G 34 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPG 34 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCc
Confidence 6899977 59999999999999999999998765
No 364
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=89.81 E-value=0.39 Score=46.24 Aligned_cols=30 Identities=30% Similarity=0.435 Sum_probs=25.6
Q ss_pred EEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 007945 113 VIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (584)
Q Consensus 113 VVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~ 142 (584)
|.|+|+| .|...|+.+|+.|++|.++|+++
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 7899965 79999999999999999999875
No 365
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=89.36 E-value=2.7 Score=49.61 Aligned_cols=32 Identities=31% Similarity=0.294 Sum_probs=27.7
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCe-EEEEcCCC
Q 007945 111 FDVIVCGGT-LGIFIATALSFKGLR-VAIVERNT 142 (584)
Q Consensus 111 yDVVIVGGg-~Gl~~Aa~LAr~Glr-VlLIEr~~ 142 (584)
-.|+||||| .|+-+|..+.+.|.+ |.++++..
T Consensus 571 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~ 604 (752)
T PRK12778 571 KKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS 604 (752)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 379999976 699999999999997 99999764
No 366
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=88.93 E-value=0.55 Score=46.11 Aligned_cols=33 Identities=30% Similarity=0.605 Sum_probs=29.4
Q ss_pred CccEEEEc-chHHHHHHHHHHhCCC-eEEEEcCCC
Q 007945 110 TFDVIVCG-GTLGIFIATALSFKGL-RVAIVERNT 142 (584)
Q Consensus 110 ~yDVVIVG-Gg~Gl~~Aa~LAr~Gl-rVlLIEr~~ 142 (584)
...|+|+| ||+|+.+|..|++.|+ ++.++|...
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ 55 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFDV 55 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 35899999 7899999999999999 699999874
No 367
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.90 E-value=0.49 Score=52.17 Aligned_cols=32 Identities=34% Similarity=0.452 Sum_probs=28.7
Q ss_pred EEEEc-chHHHHHHHHHHhCCCeEEEEcCCCCC
Q 007945 113 VIVCG-GTLGIFIATALSFKGLRVAIVERNTLK 144 (584)
Q Consensus 113 VVIVG-Gg~Gl~~Aa~LAr~GlrVlLIEr~~~~ 144 (584)
|+|+| |+.|.++|..|+++|++|.+.|+...+
T Consensus 3 v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~ 35 (459)
T PRK02705 3 AHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP 35 (459)
T ss_pred EEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence 78999 789999988999999999999988653
No 368
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=88.81 E-value=2.3 Score=45.55 Aligned_cols=100 Identities=17% Similarity=0.255 Sum_probs=68.9
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCCCcccccCCHHHHHHHHHcCCCcccccchhhhcccCCceeeecCCC
Q 007945 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG 190 (584)
Q Consensus 112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~~~~ele~~i~~~~~~~~v~f~~~~ 190 (584)
-.+|+||| +|+-++..-.+.|-+|++||-.+..+..
T Consensus 213 ~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~------------------------------------------- 249 (506)
T KOG1335|consen 213 KLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGV------------------------------------------- 249 (506)
T ss_pred eEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccc-------------------------------------------
Confidence 57888866 7999999999999999999855422210
Q ss_pred cccccccccceeCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCC-eEEEEEcC---C--cEEEccEEEEecCCChHHH
Q 007945 191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AAVLLLAE---G--KILSSHLIIDAMGNFSPVV 264 (584)
Q Consensus 191 ~l~~~~~l~~~vd~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~-gv~V~~~~---G--~~i~ArlVIdADG~~S~v~ 264 (584)
+|++ +-.....-+.++|..+..+|+|..+....| .+.|++.+ + +++.|+++.-|.|+. |+-
T Consensus 250 -----------mD~E-isk~~qr~L~kQgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRr-P~t 316 (506)
T KOG1335|consen 250 -----------MDGE-ISKAFQRVLQKQGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRR-PFT 316 (506)
T ss_pred -----------cCHH-HHHHHHHHHHhcCceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCc-ccc
Confidence 1111 111122223447899999999999999888 56666653 3 379999999999987 344
Q ss_pred hHh
Q 007945 265 KQI 267 (584)
Q Consensus 265 rql 267 (584)
+.|
T Consensus 317 ~GL 319 (506)
T KOG1335|consen 317 EGL 319 (506)
T ss_pred cCC
Confidence 444
No 369
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=88.80 E-value=0.39 Score=46.53 Aligned_cols=31 Identities=32% Similarity=0.392 Sum_probs=24.5
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 007945 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (584)
Q Consensus 112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~ 142 (584)
-|.|+|-| +|+.+|+.||++|++|+.+|.++
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~ 33 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDE 33 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-S-H
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEeCCh
Confidence 37899955 89999999999999999999775
No 370
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=88.40 E-value=0.58 Score=48.49 Aligned_cols=31 Identities=26% Similarity=0.453 Sum_probs=27.7
Q ss_pred cEEEEcc-h-HHHHHHHHHHhCCCeEEEEcCCC
Q 007945 112 DVIVCGG-T-LGIFIATALSFKGLRVAIVERNT 142 (584)
Q Consensus 112 DVVIVGG-g-~Gl~~Aa~LAr~GlrVlLIEr~~ 142 (584)
-|+|.|| | +|+-++..|.++|++|+++|...
T Consensus 2 ~iLVtGGAGYIGSHtv~~Ll~~G~~vvV~DNL~ 34 (329)
T COG1087 2 KVLVTGGAGYIGSHTVRQLLKTGHEVVVLDNLS 34 (329)
T ss_pred eEEEecCcchhHHHHHHHHHHCCCeEEEEecCC
Confidence 3789997 7 89999999999999999999765
No 371
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=88.24 E-value=0.57 Score=48.96 Aligned_cols=32 Identities=31% Similarity=0.493 Sum_probs=28.6
Q ss_pred ccEEEEc-chHHHHHHHHHHhCCCeEEEEcCCC
Q 007945 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNT 142 (584)
Q Consensus 111 yDVVIVG-Gg~Gl~~Aa~LAr~GlrVlLIEr~~ 142 (584)
..|.|+| |++|+..|+.|++.|.+|.++.|..
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~ 35 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDR 35 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence 4699999 5689999999999999999999863
No 372
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=87.68 E-value=4.5 Score=46.96 Aligned_cols=32 Identities=34% Similarity=0.314 Sum_probs=26.8
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCC-eEEEEcCCC
Q 007945 111 FDVIVCGGT-LGIFIATALSFKGL-RVAIVERNT 142 (584)
Q Consensus 111 yDVVIVGGg-~Gl~~Aa~LAr~Gl-rVlLIEr~~ 142 (584)
-.|+||||| .|.-+|..+.+.|. +|.++++..
T Consensus 324 k~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~ 357 (652)
T PRK12814 324 KKVVVIGGGNTAIDAARTALRLGAESVTILYRRT 357 (652)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 379999976 69999999899997 599998764
No 373
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=87.32 E-value=0.51 Score=48.44 Aligned_cols=32 Identities=28% Similarity=0.356 Sum_probs=25.9
Q ss_pred EEEEc-chHHHHH-----HHHHHhCCCeEEEEcCCCCC
Q 007945 113 VIVCG-GTLGIFI-----ATALSFKGLRVAIVERNTLK 144 (584)
Q Consensus 113 VVIVG-Gg~Gl~~-----Aa~LAr~GlrVlLIEr~~~~ 144 (584)
++|+| ||+|-++ |+.||++|.||+|||-.+..
T Consensus 4 i~~~gKGGVGKTT~a~nLA~~La~~G~rVLliD~Dpq~ 41 (279)
T PRK13230 4 FCFYGKGGIGKSTTVCNIAAALAESGKKVLVVGCDPKA 41 (279)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhCCCEEEEEeeCCcc
Confidence 56668 8887666 77899999999999977653
No 374
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=86.77 E-value=0.79 Score=48.75 Aligned_cols=32 Identities=38% Similarity=0.576 Sum_probs=29.4
Q ss_pred ccEEEEc-chHHHHHHHHHHhCCC-eEEEEcCCC
Q 007945 111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERNT 142 (584)
Q Consensus 111 yDVVIVG-Gg~Gl~~Aa~LAr~Gl-rVlLIEr~~ 142 (584)
.-|+||| ||+|+.+|..|++.|+ ++.++|...
T Consensus 25 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 25 KHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 5899999 7899999999999999 999999864
No 375
>PLN02976 amine oxidase
Probab=86.69 E-value=53 Score=41.64 Aligned_cols=37 Identities=8% Similarity=0.052 Sum_probs=31.8
Q ss_pred EEEeCceEEEEEEe----------CCeEEEEEcCCcEEEccEEEEec
Q 007945 221 VIFEGYSVSSICTY----------ENAAVLLLAEGKILSSHLIIDAM 257 (584)
Q Consensus 221 ~i~~~t~v~~v~~~----------~~gv~V~~~~G~~i~ArlVIdAD 257 (584)
.|+.++.|+.|... +++|.|++.+|++++|+.||-+-
T Consensus 947 ~IrLNtpVtrId~s~~d~~~~~s~~dGVtVtTsDGetftADaVIVTV 993 (1713)
T PLN02976 947 DIHLNHVVTDVSYGSKDAGASGSSRKKVKVSTSNGSEFLGDAVLITV 993 (1713)
T ss_pred CeecCCeEEEEEecCCcccccccCCCcEEEEECCCCEEEeceEEEeC
Confidence 59999999999874 46788999899999999999774
No 376
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=86.66 E-value=0.82 Score=48.62 Aligned_cols=33 Identities=33% Similarity=0.577 Sum_probs=29.6
Q ss_pred ccEEEEc-chHHHHHHHHHHhCCC-eEEEEcCCCC
Q 007945 111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERNTL 143 (584)
Q Consensus 111 yDVVIVG-Gg~Gl~~Aa~LAr~Gl-rVlLIEr~~~ 143 (584)
.-|+||| ||+|+.+|-.|++.|+ ++.|+|+...
T Consensus 25 ~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~v 59 (338)
T PRK12475 25 KHVLIVGAGALGAANAEALVRAGIGKLTIADRDYV 59 (338)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcc
Confidence 5799999 7899999999999999 8999998753
No 377
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=86.55 E-value=0.9 Score=44.55 Aligned_cols=33 Identities=30% Similarity=0.446 Sum_probs=29.7
Q ss_pred CccEEEEc-chHHHHHHHHHHhCCC-eEEEEcCCC
Q 007945 110 TFDVIVCG-GTLGIFIATALSFKGL-RVAIVERNT 142 (584)
Q Consensus 110 ~yDVVIVG-Gg~Gl~~Aa~LAr~Gl-rVlLIEr~~ 142 (584)
..-|+|+| ||+|+.+|..|++.|+ ++.++|...
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ 55 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH 55 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence 36899999 7899999999999998 899999875
No 378
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=86.43 E-value=1 Score=41.22 Aligned_cols=30 Identities=33% Similarity=0.630 Sum_probs=27.5
Q ss_pred EEEEc-chHHHHHHHHHHhCCC-eEEEEcCCC
Q 007945 113 VIVCG-GTLGIFIATALSFKGL-RVAIVERNT 142 (584)
Q Consensus 113 VVIVG-Gg~Gl~~Aa~LAr~Gl-rVlLIEr~~ 142 (584)
|+|+| |++|+.+|..|++.|+ ++.++|...
T Consensus 2 VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~ 33 (143)
T cd01483 2 VLLVGLGGLGSEIALNLARSGVGKITLIDFDT 33 (143)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence 79999 7899999999999999 699999775
No 379
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=86.18 E-value=0.97 Score=47.31 Aligned_cols=32 Identities=25% Similarity=0.417 Sum_probs=28.5
Q ss_pred ccEEEEc-chHHHHHHHHHHhCCCeEEEEcCCC
Q 007945 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNT 142 (584)
Q Consensus 111 yDVVIVG-Gg~Gl~~Aa~LAr~GlrVlLIEr~~ 142 (584)
..|.|+| |.+|++.|+.|+++|++|.++.|..
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 4699999 4579999999999999999999864
No 380
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=86.10 E-value=1.3 Score=44.57 Aligned_cols=33 Identities=27% Similarity=0.590 Sum_probs=29.7
Q ss_pred ccEEEEc-chHHHHHHHHHHhCCC-eEEEEcCCCC
Q 007945 111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERNTL 143 (584)
Q Consensus 111 yDVVIVG-Gg~Gl~~Aa~LAr~Gl-rVlLIEr~~~ 143 (584)
.-|+|+| ||+|+-++-+|||.|+ +..|||....
T Consensus 31 ~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v 65 (263)
T COG1179 31 AHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDV 65 (263)
T ss_pred CcEEEEecCchhHHHHHHHHHcCCCeEEEEecccc
Confidence 4799999 9999999999999999 7899998764
No 381
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.09 E-value=0.86 Score=50.60 Aligned_cols=31 Identities=39% Similarity=0.536 Sum_probs=27.9
Q ss_pred cEEEEc-chHHHHHHHHHHhCCCeEEEEcCCC
Q 007945 112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNT 142 (584)
Q Consensus 112 DVVIVG-Gg~Gl~~Aa~LAr~GlrVlLIEr~~ 142 (584)
.|+|+| |++|+.+|..|+++|++|.++|+.+
T Consensus 18 ~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 18 RVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 699999 5689999999999999999999765
No 382
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=85.77 E-value=1 Score=43.07 Aligned_cols=30 Identities=33% Similarity=0.492 Sum_probs=27.3
Q ss_pred EEEEc-chHHHHHHHHHHhCCCe-EEEEcCCC
Q 007945 113 VIVCG-GTLGIFIATALSFKGLR-VAIVERNT 142 (584)
Q Consensus 113 VVIVG-Gg~Gl~~Aa~LAr~Glr-VlLIEr~~ 142 (584)
|+|+| ||+|+.+|..|++.|+. +.++|...
T Consensus 2 VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 2 VGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred EEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 79999 78999999999999995 99999875
No 383
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=85.69 E-value=1.2 Score=40.76 Aligned_cols=33 Identities=33% Similarity=0.457 Sum_probs=28.9
Q ss_pred CccEEEEc-chHHHHHHHHHHhCCCe-EEEEcCCC
Q 007945 110 TFDVIVCG-GTLGIFIATALSFKGLR-VAIVERNT 142 (584)
Q Consensus 110 ~yDVVIVG-Gg~Gl~~Aa~LAr~Glr-VlLIEr~~ 142 (584)
.--|+|+| ||+|.+++..|+..|.+ |.++.|..
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~ 46 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP 46 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 35899999 78999999999999998 99998763
No 384
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=85.53 E-value=1.3 Score=48.88 Aligned_cols=34 Identities=24% Similarity=0.387 Sum_probs=29.8
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCC
Q 007945 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLK 144 (584)
Q Consensus 111 yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~ 144 (584)
-+|+||||| .|+-+|..|++.|.+|.++|+.+..
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~ 205 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRI 205 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCC
Confidence 479999975 7999999999999999999998753
No 385
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=85.51 E-value=0.91 Score=45.37 Aligned_cols=32 Identities=28% Similarity=0.517 Sum_probs=29.0
Q ss_pred cEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCCC
Q 007945 112 DVIVCGG-TLGIFIATALSFKGLRVAIVERNTL 143 (584)
Q Consensus 112 DVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~~ 143 (584)
.++|+|+ -.|.++|-.|++.|+.|++||+.+.
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~ 34 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEE 34 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHH
Confidence 5899995 5899999999999999999999874
No 386
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=85.40 E-value=56 Score=36.33 Aligned_cols=34 Identities=29% Similarity=0.396 Sum_probs=30.0
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG 145 (584)
Q Consensus 112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~ 145 (584)
+|+||||| +|+++|..|+++|++|+|+|+++..|
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~G 35 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIG 35 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCC
Confidence 58999976 69999999999999999999988654
No 387
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=85.22 E-value=0.95 Score=47.31 Aligned_cols=31 Identities=19% Similarity=0.302 Sum_probs=28.4
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 007945 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (584)
Q Consensus 112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~ 142 (584)
.|.|+|+| .|..+|..|+++|++|.++|+.+
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~ 35 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADP 35 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence 69999965 69999999999999999999885
No 388
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=85.21 E-value=1 Score=40.85 Aligned_cols=33 Identities=24% Similarity=0.541 Sum_probs=28.6
Q ss_pred ccEEEEc-chHHHHHHHHHHhCCC-eEEEEcCCCC
Q 007945 111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERNTL 143 (584)
Q Consensus 111 yDVVIVG-Gg~Gl~~Aa~LAr~Gl-rVlLIEr~~~ 143 (584)
.-|+|+| |++|+.+|-.|++.|+ ++.++|....
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v 37 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIV 37 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCCceeecCCcce
Confidence 4689999 6799999999999999 6999998754
No 389
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=84.93 E-value=0.79 Score=46.88 Aligned_cols=32 Identities=25% Similarity=0.400 Sum_probs=25.4
Q ss_pred EEEEc-chHHHHH-----HHHHHhCCCeEEEEcCCCCC
Q 007945 113 VIVCG-GTLGIFI-----ATALSFKGLRVAIVERNTLK 144 (584)
Q Consensus 113 VVIVG-Gg~Gl~~-----Aa~LAr~GlrVlLIEr~~~~ 144 (584)
|.|+| ||+|-++ |+.||++|.||+|||-.+..
T Consensus 4 iav~gKGGVGKTT~a~nLA~~La~~G~rVllvD~Dpq~ 41 (273)
T PRK13232 4 IAIYGKGGIGKSTTTQNLTAALSTMGNKILLVGCDPKA 41 (273)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhhCCCeEEEeccccc
Confidence 34558 8887766 78899999999999977653
No 390
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=84.76 E-value=1.1 Score=46.26 Aligned_cols=31 Identities=26% Similarity=0.475 Sum_probs=27.3
Q ss_pred cEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945 112 DVIVCGG-TLGIFIATALSFKGLRVAIVERNT 142 (584)
Q Consensus 112 DVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~ 142 (584)
.|.|+|+ ..|+++|..|++.|++|.+++|+.
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~ 33 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRG 33 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECCh
Confidence 3889995 579999999999999999999853
No 391
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=84.52 E-value=3.5 Score=45.26 Aligned_cols=42 Identities=26% Similarity=0.245 Sum_probs=36.5
Q ss_pred HhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCC
Q 007945 216 ISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGN 259 (584)
Q Consensus 216 ~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~ 259 (584)
++.|.+++.++.|++++.... +|.+.+|+++.-+.+|-|+|.
T Consensus 138 ke~gIe~~~~t~v~~~D~~~K--~l~~~~Ge~~kys~LilATGs 179 (478)
T KOG1336|consen 138 KEKGIELILGTSVVKADLASK--TLVLGNGETLKYSKLIIATGS 179 (478)
T ss_pred hhcCceEEEcceeEEeecccc--EEEeCCCceeecceEEEeecC
Confidence 456899999999999987664 566778999999999999999
No 392
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=84.45 E-value=2.4 Score=47.30 Aligned_cols=36 Identities=39% Similarity=0.672 Sum_probs=32.9
Q ss_pred CccEEEEcchH-HHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945 110 TFDVIVCGGTL-GIFIATALSFKGLRVAIVERNTLKG 145 (584)
Q Consensus 110 ~yDVVIVGGg~-Gl~~Aa~LAr~GlrVlLIEr~~~~~ 145 (584)
.|||||||||. |+++|+.||++|++|+|+||+..+|
T Consensus 3 ~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~G 39 (487)
T COG1233 3 MYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVG 39 (487)
T ss_pred CccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCC
Confidence 69999999874 9999999999999999999998765
No 393
>PLN02676 polyamine oxidase
Probab=84.11 E-value=2.5 Score=47.20 Aligned_cols=35 Identities=31% Similarity=0.388 Sum_probs=31.0
Q ss_pred CccEEEEcch-HHHHHHHHHHhCCC-eEEEEcCCCCC
Q 007945 110 TFDVIVCGGT-LGIFIATALSFKGL-RVAIVERNTLK 144 (584)
Q Consensus 110 ~yDVVIVGGg-~Gl~~Aa~LAr~Gl-rVlLIEr~~~~ 144 (584)
.+||+||||| .|+++|..|+++|+ +|+|+|++...
T Consensus 26 ~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~ 62 (487)
T PLN02676 26 SPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRI 62 (487)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCC
Confidence 6899999976 69999999999998 59999998754
No 394
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=84.01 E-value=1.2 Score=46.13 Aligned_cols=29 Identities=24% Similarity=0.299 Sum_probs=26.3
Q ss_pred cEEEEcc-hHHHHHHHHHHhCCCeEEEEcC
Q 007945 112 DVIVCGG-TLGIFIATALSFKGLRVAIVER 140 (584)
Q Consensus 112 DVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr 140 (584)
.|.|+|+ ..|+++|..|+++|++|.+++|
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 4889995 5799999999999999999997
No 395
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=83.73 E-value=9.5 Score=44.24 Aligned_cols=32 Identities=22% Similarity=0.277 Sum_probs=26.2
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCC-eEEEEcCCC
Q 007945 111 FDVIVCGGT-LGIFIATALSFKGL-RVAIVERNT 142 (584)
Q Consensus 111 yDVVIVGGg-~Gl~~Aa~LAr~Gl-rVlLIEr~~ 142 (584)
-.|+||||| .|+-+|..+.+.|. +|.++.+..
T Consensus 469 k~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~ 502 (654)
T PRK12769 469 LNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRD 502 (654)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecC
Confidence 379999976 68888888888997 699998764
No 396
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=83.59 E-value=2.7 Score=45.04 Aligned_cols=55 Identities=22% Similarity=0.196 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEc-CCcEEEccEEEEecCCC
Q 007945 206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA-EGKILSSHLIIDAMGNF 260 (584)
Q Consensus 206 ~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~-~G~~i~ArlVIdADG~~ 260 (584)
.+.+.|.+.+.+.|++|+.+++|++|..+++++++.+. +|+++.||.||-|.-..
T Consensus 198 ~~~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~~~~~~~~~g~~~~~d~vi~a~p~~ 253 (419)
T TIGR03467 198 LFPEPARRWLDSRGGEVRLGTRVRSIEANAGGIRALVLSGGETLPADAVVLAVPPR 253 (419)
T ss_pred HHHHHHHHHHHHcCCEEEcCCeeeEEEEcCCcceEEEecCCccccCCEEEEcCCHH
Confidence 34455777887889999999999999998888765543 67789999999875543
No 397
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=83.51 E-value=1.2 Score=46.03 Aligned_cols=32 Identities=28% Similarity=0.296 Sum_probs=28.5
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCC
Q 007945 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTL 143 (584)
Q Consensus 112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~ 143 (584)
-|.|||+| .|..+|..+++.|++|.++|+.+.
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 39 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE 39 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 58899955 799999999999999999998864
No 398
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=83.41 E-value=1.3 Score=46.70 Aligned_cols=31 Identities=16% Similarity=0.130 Sum_probs=28.1
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 007945 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (584)
Q Consensus 112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~ 142 (584)
-|.|||+| .|...|+.++.+|++|.+.|+.+
T Consensus 9 ~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 9 TFAAIGSGVIGSGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 58999965 79999999999999999999876
No 399
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=83.27 E-value=1.5 Score=45.05 Aligned_cols=33 Identities=24% Similarity=0.467 Sum_probs=29.0
Q ss_pred CccEEEEc-chHHHHHHHHHHhCC-CeEEEEcCCC
Q 007945 110 TFDVIVCG-GTLGIFIATALSFKG-LRVAIVERNT 142 (584)
Q Consensus 110 ~yDVVIVG-Gg~Gl~~Aa~LAr~G-lrVlLIEr~~ 142 (584)
..-|+|+| ||+|+.+|-.||+.| -++.|+|...
T Consensus 30 ~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~ 64 (268)
T PRK15116 30 DAHICVVGIGGVGSWAAEALARTGIGAITLIDMDD 64 (268)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 35899999 789999999999999 4899999764
No 400
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=83.17 E-value=1.2 Score=47.25 Aligned_cols=26 Identities=27% Similarity=0.342 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945 120 LGIFIATALSFKGLRVAIVERNTLKG 145 (584)
Q Consensus 120 ~Gl~~Aa~LAr~GlrVlLIEr~~~~~ 145 (584)
+|+++|..|+++|++|+|+|++..+|
T Consensus 2 aGL~aA~~L~~~G~~v~vlEa~~r~G 27 (450)
T PF01593_consen 2 AGLAAAYYLAKAGYDVTVLEASDRVG 27 (450)
T ss_dssp HHHHHHHHHHHTTTEEEEEESSSSSB
T ss_pred hHHHHHHHHHhCCCCEEEEEcCCCCC
Confidence 69999999999999999999998754
No 401
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=83.14 E-value=11 Score=41.80 Aligned_cols=32 Identities=22% Similarity=0.166 Sum_probs=26.7
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCC-eEEEEcCCC
Q 007945 111 FDVIVCGGT-LGIFIATALSFKGL-RVAIVERNT 142 (584)
Q Consensus 111 yDVVIVGGg-~Gl~~Aa~LAr~Gl-rVlLIEr~~ 142 (584)
-.|+|+||| .|+-+|..+.+.|. +|.+|+|..
T Consensus 283 k~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~ 316 (467)
T TIGR01318 283 KRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRD 316 (467)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecC
Confidence 479999975 68888888888896 699998864
No 402
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=82.84 E-value=1.2 Score=45.54 Aligned_cols=32 Identities=25% Similarity=0.370 Sum_probs=25.0
Q ss_pred EEEEc-chHHHHH-----HHHHHhCCCeEEEEcCCCCC
Q 007945 113 VIVCG-GTLGIFI-----ATALSFKGLRVAIVERNTLK 144 (584)
Q Consensus 113 VVIVG-Gg~Gl~~-----Aa~LAr~GlrVlLIEr~~~~ 144 (584)
|.|+| ||+|-++ |+.||++|.||+|||-.+..
T Consensus 4 iav~~KGGVGKTT~~~nLA~~La~~G~rVLlID~Dpq~ 41 (274)
T PRK13235 4 VAIYGKGGIGKSTTTQNTVAGLAEMGKKVMVVGCDPKA 41 (274)
T ss_pred EEEeCCCCccHHHHHHHHHHHHHHCCCcEEEEecCCcc
Confidence 45568 7877665 77899999999999977653
No 403
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=82.76 E-value=1.7 Score=37.92 Aligned_cols=30 Identities=33% Similarity=0.648 Sum_probs=27.0
Q ss_pred EEEEc-chHHHHHHHHHHhCCCeEEEEcCCC
Q 007945 113 VIVCG-GTLGIFIATALSFKGLRVAIVERNT 142 (584)
Q Consensus 113 VVIVG-Gg~Gl~~Aa~LAr~GlrVlLIEr~~ 142 (584)
||||| |..|..+|-.|.+.+.+|+++|+.+
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~ 31 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDP 31 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCc
Confidence 78999 5689999999999888999999885
No 404
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=82.76 E-value=1.6 Score=42.79 Aligned_cols=31 Identities=19% Similarity=0.268 Sum_probs=27.2
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCC
Q 007945 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERN 141 (584)
Q Consensus 111 yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~ 141 (584)
--|+||||| +|...|..|.+.|.+|+||++.
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 479999976 7999999999999999999854
No 405
>PRK04148 hypothetical protein; Provisional
Probab=82.74 E-value=1.1 Score=41.01 Aligned_cols=32 Identities=19% Similarity=0.244 Sum_probs=28.3
Q ss_pred ccEEEEcchHHHHHHHHHHhCCCeEEEEcCCC
Q 007945 111 FDVIVCGGTLGIFIATALSFKGLRVAIVERNT 142 (584)
Q Consensus 111 yDVVIVGGg~Gl~~Aa~LAr~GlrVlLIEr~~ 142 (584)
--|++||-|.|..+|..|++.|++|+.+|.++
T Consensus 18 ~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~ 49 (134)
T PRK04148 18 KKIVELGIGFYFKVAKKLKESGFDVIVIDINE 49 (134)
T ss_pred CEEEEEEecCCHHHHHHHHHCCCEEEEEECCH
Confidence 35999995599989999999999999999775
No 406
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=82.73 E-value=1.7 Score=43.96 Aligned_cols=33 Identities=24% Similarity=0.471 Sum_probs=28.6
Q ss_pred CccEEEEc-chHHHHHHHHHHhCCC-eEEEEcCCC
Q 007945 110 TFDVIVCG-GTLGIFIATALSFKGL-RVAIVERNT 142 (584)
Q Consensus 110 ~yDVVIVG-Gg~Gl~~Aa~LAr~Gl-rVlLIEr~~ 142 (584)
...|+|+| ||+|+.+|..|++.|+ ++.++|...
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ 58 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDT 58 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence 36899999 7899999999999998 678888765
No 407
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=82.68 E-value=1.7 Score=40.86 Aligned_cols=30 Identities=27% Similarity=0.310 Sum_probs=26.4
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCeEEEEcC
Q 007945 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVER 140 (584)
Q Consensus 111 yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr 140 (584)
--|+||||| +|..-|..|.+.|.+|+||++
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp 44 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDTGAFVTVVSP 44 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence 479999976 799999999999999999953
No 408
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=82.65 E-value=1.5 Score=45.34 Aligned_cols=31 Identities=35% Similarity=0.527 Sum_probs=27.9
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 007945 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (584)
Q Consensus 112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~ 142 (584)
-|.|+|+| .|..+|..++++|++|.++|+++
T Consensus 5 kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 5 NVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 58999965 69999999999999999999875
No 409
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=82.63 E-value=1.1 Score=45.58 Aligned_cols=31 Identities=26% Similarity=0.334 Sum_probs=24.1
Q ss_pred EEEEc-chHHHHH-----HHHHHhCCCeEEEEcCCCC
Q 007945 113 VIVCG-GTLGIFI-----ATALSFKGLRVAIVERNTL 143 (584)
Q Consensus 113 VVIVG-Gg~Gl~~-----Aa~LAr~GlrVlLIEr~~~ 143 (584)
|.|.| ||+|-++ |+.||++|.||+|||=.+.
T Consensus 3 i~~~gKGGVGKTT~~~nLA~~La~~g~rVLliD~D~q 39 (268)
T TIGR01281 3 LAVYGKGGIGKSTTSSNLSVAFAKLGKRVLQIGCDPK 39 (268)
T ss_pred EEEEcCCcCcHHHHHHHHHHHHHhCCCeEEEEecCcc
Confidence 45667 7776655 6678899999999997764
No 410
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=82.50 E-value=1.5 Score=47.16 Aligned_cols=63 Identities=22% Similarity=0.243 Sum_probs=53.4
Q ss_pred CHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCcEEEccEEEEecCC--ChHHHh
Q 007945 203 SPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGN--FSPVVK 265 (584)
Q Consensus 203 d~~~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~~i~ArlVIdADG~--~S~v~r 265 (584)
-++.|-++-.++.++.|+.++.+..|.++......+.+.++||.+++.++||.|.|- +|-++.
T Consensus 391 LPeyls~wt~ekir~~GV~V~pna~v~sv~~~~~nl~lkL~dG~~l~tD~vVvavG~ePN~ela~ 455 (659)
T KOG1346|consen 391 LPEYLSQWTIEKIRKGGVDVRPNAKVESVRKCCKNLVLKLSDGSELRTDLVVVAVGEEPNSELAE 455 (659)
T ss_pred hHHHHHHHHHHHHHhcCceeccchhhhhhhhhccceEEEecCCCeeeeeeEEEEecCCCchhhcc
Confidence 345566677778888899999999999998888889999999999999999999995 455664
No 411
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=82.45 E-value=1.2 Score=45.32 Aligned_cols=31 Identities=26% Similarity=0.385 Sum_probs=24.6
Q ss_pred EEEEc-chHHHHH-----HHHHHhCCCeEEEEcCCCC
Q 007945 113 VIVCG-GTLGIFI-----ATALSFKGLRVAIVERNTL 143 (584)
Q Consensus 113 VVIVG-Gg~Gl~~-----Aa~LAr~GlrVlLIEr~~~ 143 (584)
|.|.| ||+|-++ |..||++|.||+|||-.+.
T Consensus 3 i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD~Dpq 39 (267)
T cd02032 3 LAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIGCDPK 39 (267)
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 56778 7776554 7788999999999998764
No 412
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=82.44 E-value=1.1 Score=45.40 Aligned_cols=31 Identities=29% Similarity=0.424 Sum_probs=24.5
Q ss_pred EEEEc-chHHHHH-----HHHHHhCCCeEEEEcCCCC
Q 007945 113 VIVCG-GTLGIFI-----ATALSFKGLRVAIVERNTL 143 (584)
Q Consensus 113 VVIVG-Gg~Gl~~-----Aa~LAr~GlrVlLIEr~~~ 143 (584)
++|+| ||+|-++ |+.||++|.||+|||=.+.
T Consensus 4 iav~~KGGvGKTT~~~nLA~~La~~G~kVlliD~Dpq 40 (270)
T cd02040 4 IAIYGKGGIGKSTTTQNLSAALAEMGKKVMIVGCDPK 40 (270)
T ss_pred EEEEeCCcCCHHHHHHHHHHHHHhCCCeEEEEEcCCC
Confidence 55668 7776665 6778899999999997764
No 413
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=82.29 E-value=1.8 Score=42.93 Aligned_cols=33 Identities=33% Similarity=0.467 Sum_probs=29.3
Q ss_pred CccEEEEc-chHHHHHHHHHHhCCCe-EEEEcCCC
Q 007945 110 TFDVIVCG-GTLGIFIATALSFKGLR-VAIVERNT 142 (584)
Q Consensus 110 ~yDVVIVG-Gg~Gl~~Aa~LAr~Glr-VlLIEr~~ 142 (584)
..-|+|+| ||+|+.+|..|++.|+. +.++|...
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 62 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDV 62 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 35899999 78999999999999996 99999774
No 414
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=82.26 E-value=1.5 Score=44.92 Aligned_cols=32 Identities=31% Similarity=0.420 Sum_probs=25.4
Q ss_pred EEEEc-chHHHHH-----HHHHHhCCCeEEEEcCCCCC
Q 007945 113 VIVCG-GTLGIFI-----ATALSFKGLRVAIVERNTLK 144 (584)
Q Consensus 113 VVIVG-Gg~Gl~~-----Aa~LAr~GlrVlLIEr~~~~ 144 (584)
+.|.| ||+|-++ |..||++|.||+|||=.+..
T Consensus 3 ia~~gKGGVGKTT~a~nLA~~La~~G~~VlliD~D~q~ 40 (275)
T TIGR01287 3 IAIYGKGGIGKSTTTQNIAAALAEMGKKVMIVGCDPKA 40 (275)
T ss_pred eEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 56789 8776555 77888999999999977654
No 415
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=82.26 E-value=1.5 Score=45.38 Aligned_cols=31 Identities=23% Similarity=0.458 Sum_probs=27.8
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 007945 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (584)
Q Consensus 112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~ 142 (584)
.|.|||+| .|..+|..|+++|++|.++|+++
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~ 34 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQ 34 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCCcEEEEeCCH
Confidence 48899965 69999999999999999999875
No 416
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=81.79 E-value=1.6 Score=42.92 Aligned_cols=32 Identities=25% Similarity=0.340 Sum_probs=24.8
Q ss_pred EEEEc-chHHHHH-----HHHHHhCCCeEEEEcCCCCC
Q 007945 113 VIVCG-GTLGIFI-----ATALSFKGLRVAIVERNTLK 144 (584)
Q Consensus 113 VVIVG-Gg~Gl~~-----Aa~LAr~GlrVlLIEr~~~~ 144 (584)
|.|.| ||.|-++ |+.||++|.||+|||-.+..
T Consensus 3 iav~gKGGvGKTt~~~nLA~~la~~G~rvLliD~D~q~ 40 (212)
T cd02117 3 IAIYGKGGIGKSTTSQNLSAALAEMGKKVLQVGCDPKA 40 (212)
T ss_pred EEEECCCcCcHHHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 56778 7776665 66788999999999966543
No 417
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=81.60 E-value=1.9 Score=44.67 Aligned_cols=32 Identities=31% Similarity=0.433 Sum_probs=28.5
Q ss_pred ccEEEEc-chHHHHHHHHHHhCCC-eEEEEcCCC
Q 007945 111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERNT 142 (584)
Q Consensus 111 yDVVIVG-Gg~Gl~~Aa~LAr~Gl-rVlLIEr~~ 142 (584)
-.|+|+| ||+|.++|..|++.|+ +|.|++|..
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~ 161 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP 161 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 4799999 6899999999999998 799999874
No 418
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=81.52 E-value=1.7 Score=52.07 Aligned_cols=36 Identities=31% Similarity=0.410 Sum_probs=32.7
Q ss_pred ccEEEEc-chHHHHHHHHHHhCCCeEEEEcCCCCCCC
Q 007945 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGR 146 (584)
Q Consensus 111 yDVVIVG-Gg~Gl~~Aa~LAr~GlrVlLIEr~~~~~~ 146 (584)
.-|.||| ||+|+++|..|-+.|+-|+|.||...++-
T Consensus 1786 ~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~gg 1822 (2142)
T KOG0399|consen 1786 KRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGG 1822 (2142)
T ss_pred cEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCc
Confidence 6899999 78899999999999999999999987653
No 419
>PRK08328 hypothetical protein; Provisional
Probab=81.41 E-value=2 Score=43.05 Aligned_cols=33 Identities=33% Similarity=0.530 Sum_probs=28.6
Q ss_pred CccEEEEc-chHHHHHHHHHHhCCC-eEEEEcCCC
Q 007945 110 TFDVIVCG-GTLGIFIATALSFKGL-RVAIVERNT 142 (584)
Q Consensus 110 ~yDVVIVG-Gg~Gl~~Aa~LAr~Gl-rVlLIEr~~ 142 (584)
..-|+|+| ||+|+.+|..|++.|+ ++.++|...
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ 61 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT 61 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 35799999 7899999999999998 578888764
No 420
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=81.40 E-value=1.7 Score=44.98 Aligned_cols=31 Identities=29% Similarity=0.356 Sum_probs=27.8
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 007945 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (584)
Q Consensus 112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~ 142 (584)
-|.|+|+| .|..+|..++++|++|.++|+++
T Consensus 5 ~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (291)
T PRK06035 5 VIGVVGSGVMGQGIAQVFARTGYDVTIVDVSE 36 (291)
T ss_pred EEEEECccHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 48999965 79999999999999999999875
No 421
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=81.29 E-value=1.7 Score=44.93 Aligned_cols=31 Identities=26% Similarity=0.300 Sum_probs=27.9
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 007945 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (584)
Q Consensus 112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~ 142 (584)
.|.|||+| .|..+|..|+++|++|.++|+.+
T Consensus 6 kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (292)
T PRK07530 6 KVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA 37 (292)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 58999965 79999999999999999999875
No 422
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=81.26 E-value=1.8 Score=47.46 Aligned_cols=32 Identities=25% Similarity=0.396 Sum_probs=28.5
Q ss_pred ccEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945 111 FDVIVCGG-TLGIFIATALSFKGLRVAIVERNT 142 (584)
Q Consensus 111 yDVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~ 142 (584)
-.|+|+|+ ++|..+|..|+++|++|.++|+..
T Consensus 6 k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 6 KKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 46899995 689999999999999999999874
No 423
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=81.22 E-value=2.1 Score=43.35 Aligned_cols=33 Identities=24% Similarity=0.408 Sum_probs=28.2
Q ss_pred CccEEEEc-chHHHHHHHHHHhCC-----------CeEEEEcCCC
Q 007945 110 TFDVIVCG-GTLGIFIATALSFKG-----------LRVAIVERNT 142 (584)
Q Consensus 110 ~yDVVIVG-Gg~Gl~~Aa~LAr~G-----------lrVlLIEr~~ 142 (584)
...|+||| ||+|+.++-.||+.| .++.|+|...
T Consensus 11 ~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~ 55 (244)
T TIGR03736 11 PVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT 55 (244)
T ss_pred CCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence 47899999 789999999999864 3899999765
No 424
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=80.89 E-value=2.2 Score=42.03 Aligned_cols=31 Identities=23% Similarity=0.374 Sum_probs=27.2
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 007945 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (584)
Q Consensus 112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~ 142 (584)
-|+||||| +|..-|..|.+.|.+|+|+++..
T Consensus 11 ~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~ 42 (205)
T TIGR01470 11 AVLVVGGGDVALRKARLLLKAGAQLRVIAEEL 42 (205)
T ss_pred eEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 69999975 79998999999999999998653
No 425
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=80.78 E-value=6.1 Score=43.01 Aligned_cols=46 Identities=11% Similarity=0.012 Sum_probs=36.0
Q ss_pred HhCCCEEEeCceEEEEEEeCCeEEEEEcC-CcEEE--ccEEEEecCCCh
Q 007945 216 ISLGGVIFEGYSVSSICTYENAAVLLLAE-GKILS--SHLIIDAMGNFS 261 (584)
Q Consensus 216 ~~~G~~i~~~t~v~~v~~~~~gv~V~~~~-G~~i~--ArlVIdADG~~S 261 (584)
.+.|++++.+++|++++.++..+.+...+ ++++. ++.||-|+|...
T Consensus 55 ~~~gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lIiATG~~p 103 (427)
T TIGR03385 55 KKRGIDVKTNHEVIEVNDERQTVVVRNNKTNETYEESYDYLILSPGASP 103 (427)
T ss_pred HhcCCeEEecCEEEEEECCCCEEEEEECCCCCEEecCCCEEEECCCCCC
Confidence 55689998999999998766666665432 45788 999999999854
No 426
>PRK08223 hypothetical protein; Validated
Probab=80.72 E-value=2.1 Score=44.35 Aligned_cols=32 Identities=22% Similarity=0.360 Sum_probs=28.2
Q ss_pred ccEEEEc-chHHHHHHHHHHhCCC-eEEEEcCCC
Q 007945 111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERNT 142 (584)
Q Consensus 111 yDVVIVG-Gg~Gl~~Aa~LAr~Gl-rVlLIEr~~ 142 (584)
.-|+||| ||+|+.+|..||+.|+ ++.++|...
T Consensus 28 s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~ 61 (287)
T PRK08223 28 SRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDV 61 (287)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 5899999 7899999999999999 678888664
No 427
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=80.70 E-value=1.8 Score=45.02 Aligned_cols=30 Identities=27% Similarity=0.521 Sum_probs=26.1
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (584)
Q Consensus 113 VVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~ 142 (584)
.||.|| |+|-+-|-.||++|++|+||-|..
T Consensus 52 AVVTGaTDGIGKayA~eLAkrG~nvvLIsRt~ 83 (312)
T KOG1014|consen 52 AVVTGATDGIGKAYARELAKRGFNVVLISRTQ 83 (312)
T ss_pred EEEECCCCcchHHHHHHHHHcCCEEEEEeCCH
Confidence 556674 799999999999999999998874
No 428
>PLN02487 zeta-carotene desaturase
Probab=80.58 E-value=1.1e+02 Score=34.94 Aligned_cols=36 Identities=28% Similarity=0.375 Sum_probs=31.7
Q ss_pred CccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG 145 (584)
Q Consensus 110 ~yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~ 145 (584)
..+|+||||| .|+++|..|+++|++|+|+|+.+..+
T Consensus 75 ~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~g 111 (569)
T PLN02487 75 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIG 111 (569)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCC
Confidence 4699999975 69999999999999999999988654
No 429
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=80.57 E-value=2.1 Score=44.43 Aligned_cols=32 Identities=19% Similarity=0.315 Sum_probs=27.7
Q ss_pred ccEEEEc-chHHHHHHHHHHhCCCe-EEEEcCCC
Q 007945 111 FDVIVCG-GTLGIFIATALSFKGLR-VAIVERNT 142 (584)
Q Consensus 111 yDVVIVG-Gg~Gl~~Aa~LAr~Glr-VlLIEr~~ 142 (584)
--|+|+| ||+|.++|..|++.|++ |.++.|..
T Consensus 127 k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 127 KKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 3589999 68999999999999997 99999864
No 430
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=80.56 E-value=2 Score=45.88 Aligned_cols=35 Identities=26% Similarity=0.301 Sum_probs=29.6
Q ss_pred ccEEEEc-chHHHHHHHHHHh--CCCeEEEEcCCCCCC
Q 007945 111 FDVIVCG-GTLGIFIATALSF--KGLRVAIVERNTLKG 145 (584)
Q Consensus 111 yDVVIVG-Gg~Gl~~Aa~LAr--~GlrVlLIEr~~~~~ 145 (584)
.-|.||| ||+|..+|..|-+ -++.|.++|+.+.|.
T Consensus 21 p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPF 58 (468)
T KOG1800|consen 21 PRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPF 58 (468)
T ss_pred ceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCccc
Confidence 4799999 6789999997765 489999999999764
No 431
>PRK13236 nitrogenase reductase; Reviewed
Probab=80.43 E-value=1.4 Score=45.85 Aligned_cols=33 Identities=24% Similarity=0.347 Sum_probs=24.9
Q ss_pred EEEEc-chHHHHH-----HHHHHhCCCeEEEEcCCCCCC
Q 007945 113 VIVCG-GTLGIFI-----ATALSFKGLRVAIVERNTLKG 145 (584)
Q Consensus 113 VVIVG-Gg~Gl~~-----Aa~LAr~GlrVlLIEr~~~~~ 145 (584)
+.+.| ||+|-++ |+.||++|.||+|||-.+...
T Consensus 9 ~~~~GKGGVGKTt~a~NLA~~La~~G~rVLliD~D~q~~ 47 (296)
T PRK13236 9 IAFYGKGGIGKSTTSQNTLAAMAEMGQRILIVGCDPKAD 47 (296)
T ss_pred EEEECCCcCCHHHHHHHHHHHHHHCCCcEEEEEccCCCC
Confidence 44556 6776655 888999999999999776543
No 432
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=80.37 E-value=1.5 Score=45.61 Aligned_cols=32 Identities=28% Similarity=0.422 Sum_probs=25.5
Q ss_pred EEEEc-chHHHH-----HHHHHHhCCCeEEEEcCCCCC
Q 007945 113 VIVCG-GTLGIF-----IATALSFKGLRVAIVERNTLK 144 (584)
Q Consensus 113 VVIVG-Gg~Gl~-----~Aa~LAr~GlrVlLIEr~~~~ 144 (584)
++|.| ||+|-+ +|+.||+.|.||+|||-.+..
T Consensus 3 ia~~gKGGVGKTTta~nLA~~La~~G~rVLlID~DpQ~ 40 (290)
T CHL00072 3 LAVYGKGGIGKSTTSCNISIALARRGKKVLQIGCDPKH 40 (290)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeccCCC
Confidence 67888 876554 477899999999999977653
No 433
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=80.35 E-value=2.3 Score=42.39 Aligned_cols=32 Identities=31% Similarity=0.522 Sum_probs=28.6
Q ss_pred ccEEEEc-chHHHHHHHHHHhCCC-eEEEEcCCC
Q 007945 111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERNT 142 (584)
Q Consensus 111 yDVVIVG-Gg~Gl~~Aa~LAr~Gl-rVlLIEr~~ 142 (584)
.-|+|+| ||+|+.+|..|++.|+ ++.|+|...
T Consensus 22 ~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 22 ARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 5899999 7899999999999999 778888764
No 434
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=80.34 E-value=5.6 Score=44.22 Aligned_cols=35 Identities=31% Similarity=0.532 Sum_probs=31.1
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG 145 (584)
Q Consensus 111 yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~ 145 (584)
-|||||||| .|+++|+.||++|++|+|+||+..+|
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~G 37 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPG 37 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 499999976 58999999999999999999998654
No 435
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=80.10 E-value=2 Score=45.34 Aligned_cols=30 Identities=23% Similarity=0.536 Sum_probs=27.2
Q ss_pred cEEEEcc-hHHHHHHHHHHhCCCeEEEEcCC
Q 007945 112 DVIVCGG-TLGIFIATALSFKGLRVAIVERN 141 (584)
Q Consensus 112 DVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~ 141 (584)
.|.|+|. ..|+..|..|+++|++|.+++|.
T Consensus 4 kI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 4 RICVLGAGSIGCYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence 5899995 57999999999999999999975
No 436
>PLN02780 ketoreductase/ oxidoreductase
Probab=79.74 E-value=1.9 Score=45.25 Aligned_cols=31 Identities=35% Similarity=0.434 Sum_probs=27.6
Q ss_pred cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945 112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (584)
Q Consensus 112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~ 142 (584)
=++|.|| |+|..+|..|+++|++|++++|++
T Consensus 55 ~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~ 87 (320)
T PLN02780 55 WALVTGPTDGIGKGFAFQLARKGLNLVLVARNP 87 (320)
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCH
Confidence 4888894 789999999999999999999874
No 437
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=79.68 E-value=1.7 Score=44.28 Aligned_cols=31 Identities=23% Similarity=0.319 Sum_probs=23.6
Q ss_pred EEEEc-chHHHHH-----HHHHHhCCCeEEEEcCCCC
Q 007945 113 VIVCG-GTLGIFI-----ATALSFKGLRVAIVERNTL 143 (584)
Q Consensus 113 VVIVG-Gg~Gl~~-----Aa~LAr~GlrVlLIEr~~~ 143 (584)
|.|+| ||+|-++ |+.||++|.||+|||-.+.
T Consensus 5 Iav~~KGGVGKTT~~~nLA~~la~~G~kVLliD~Dpq 41 (270)
T PRK13185 5 LAVYGKGGIGKSTTSSNLSAAFAKLGKKVLQIGCDPK 41 (270)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeccCC
Confidence 34556 7776665 7788999999999997754
No 438
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=79.63 E-value=2.5 Score=42.83 Aligned_cols=33 Identities=30% Similarity=0.490 Sum_probs=29.2
Q ss_pred CccEEEEc-chHHHHHHHHHHhCCC-eEEEEcCCC
Q 007945 110 TFDVIVCG-GTLGIFIATALSFKGL-RVAIVERNT 142 (584)
Q Consensus 110 ~yDVVIVG-Gg~Gl~~Aa~LAr~Gl-rVlLIEr~~ 142 (584)
...|+|+| ||+|+.+|..|++.|+ +..++|...
T Consensus 32 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ 66 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT 66 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 36899999 7899999999999998 788998774
No 439
>PRK13984 putative oxidoreductase; Provisional
Probab=79.60 E-value=18 Score=41.55 Aligned_cols=28 Identities=21% Similarity=0.312 Sum_probs=21.9
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCC------eEEEE
Q 007945 111 FDVIVCGGT-LGIFIATALSFKGL------RVAIV 138 (584)
Q Consensus 111 yDVVIVGGg-~Gl~~Aa~LAr~Gl------rVlLI 138 (584)
-.|+||||| .|+=+|..|++.|. +|.++
T Consensus 419 k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~ 453 (604)
T PRK13984 419 RSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVT 453 (604)
T ss_pred CcEEEECCchHHHHHHHHHHhccccccCceEEEEe
Confidence 379999976 69999999988764 56665
No 440
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=79.59 E-value=1.8 Score=45.05 Aligned_cols=29 Identities=28% Similarity=0.338 Sum_probs=23.6
Q ss_pred EEc-chHHHHH-----HHHHHhCCCeEEEEcCCCC
Q 007945 115 VCG-GTLGIFI-----ATALSFKGLRVAIVERNTL 143 (584)
Q Consensus 115 IVG-Gg~Gl~~-----Aa~LAr~GlrVlLIEr~~~ 143 (584)
|.| ||+|-++ |+.||++|.||+|||-.+.
T Consensus 9 i~~KGGvGKTt~~~nLa~~la~~g~kVLliD~D~q 43 (295)
T PRK13234 9 FYGKGGIGKSTTSQNTLAALVEMGQKILIVGCDPK 43 (295)
T ss_pred EECCCCccHHHHHHHHHHHHHHCCCeEEEEecccc
Confidence 447 7887776 7789999999999997764
No 441
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=79.48 E-value=2.5 Score=42.42 Aligned_cols=32 Identities=28% Similarity=0.557 Sum_probs=28.9
Q ss_pred ccEEEEc-chHHHHHHHHHHhCCC-eEEEEcCCC
Q 007945 111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERNT 142 (584)
Q Consensus 111 yDVVIVG-Gg~Gl~~Aa~LAr~Gl-rVlLIEr~~ 142 (584)
.-|+|+| ||+|+.+|-.|++.|. +.+|+|...
T Consensus 12 ~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~ 45 (231)
T cd00755 12 AHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV 45 (231)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 5799999 8999999999999999 889998765
No 442
>PRK08177 short chain dehydrogenase; Provisional
Probab=79.42 E-value=2.5 Score=41.37 Aligned_cols=30 Identities=23% Similarity=0.401 Sum_probs=27.2
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (584)
Q Consensus 113 VVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~ 142 (584)
|+|.|| ++|..+|..|+++|++|++++|.+
T Consensus 4 vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~ 35 (225)
T PRK08177 4 ALIIGASRGLGLGLVDRLLERGWQVTATVRGP 35 (225)
T ss_pred EEEeCCCchHHHHHHHHHHhCCCEEEEEeCCC
Confidence 789994 689999999999999999999875
No 443
>PRK06483 dihydromonapterin reductase; Provisional
Probab=79.36 E-value=2.6 Score=41.54 Aligned_cols=31 Identities=23% Similarity=0.405 Sum_probs=27.4
Q ss_pred cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945 112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (584)
Q Consensus 112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~ 142 (584)
-++|.|| ++|..+|..|+++|++|++++|.+
T Consensus 4 ~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~ 36 (236)
T PRK06483 4 PILITGAGQRIGLALAWHLLAQGQPVIVSYRTH 36 (236)
T ss_pred eEEEECCCChHHHHHHHHHHHCCCeEEEEeCCc
Confidence 4789994 689999999999999999999864
No 444
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=79.22 E-value=2.4 Score=40.14 Aligned_cols=31 Identities=42% Similarity=0.524 Sum_probs=26.2
Q ss_pred cEEEEc-chHHHHHHHHHHhCCCeEEEEcCCC
Q 007945 112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNT 142 (584)
Q Consensus 112 DVVIVG-Gg~Gl~~Aa~LAr~GlrVlLIEr~~ 142 (584)
-|+|+| |-.|..+|..|...|.+|.|.|..|
T Consensus 25 ~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DP 56 (162)
T PF00670_consen 25 RVVVIGYGKVGKGIARALRGLGARVTVTEIDP 56 (162)
T ss_dssp EEEEE--SHHHHHHHHHHHHTT-EEEEE-SSH
T ss_pred EEEEeCCCcccHHHHHHHhhCCCEEEEEECCh
Confidence 699999 8899999999999999999999876
No 445
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=79.13 E-value=2.5 Score=42.47 Aligned_cols=31 Identities=35% Similarity=0.595 Sum_probs=27.4
Q ss_pred cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945 112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (584)
Q Consensus 112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~ 142 (584)
-++|.|| |+|..+|..|+++|++|.+++|+.
T Consensus 7 ~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~ 39 (262)
T TIGR03325 7 VVLVTGGASGLGRAIVDRFVAEGARVAVLDKSA 39 (262)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 5788894 689999999999999999998864
No 446
>PRK08862 short chain dehydrogenase; Provisional
Probab=78.97 E-value=2.5 Score=41.88 Aligned_cols=31 Identities=13% Similarity=0.309 Sum_probs=27.6
Q ss_pred cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945 112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (584)
Q Consensus 112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~ 142 (584)
-++|.|| |+|.++|..|+++|++|+++.|..
T Consensus 7 ~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~ 39 (227)
T PRK08862 7 IILITSAGSVLGRTISCHFARLGATLILCDQDQ 39 (227)
T ss_pred EEEEECCccHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 5899995 689999999999999999998764
No 447
>PRK08339 short chain dehydrogenase; Provisional
Probab=78.94 E-value=2.5 Score=42.74 Aligned_cols=31 Identities=23% Similarity=0.318 Sum_probs=27.3
Q ss_pred cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945 112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (584)
Q Consensus 112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~ 142 (584)
-++|.|| |+|..+|..|+++|++|++++|+.
T Consensus 10 ~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~ 42 (263)
T PRK08339 10 LAFTTASSKGIGFGVARVLARAGADVILLSRNE 42 (263)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4788994 799999999999999999999864
No 448
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=78.86 E-value=2.2 Score=43.85 Aligned_cols=31 Identities=26% Similarity=0.340 Sum_probs=28.0
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 007945 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (584)
Q Consensus 112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~ 142 (584)
.|.|||+| .|..+|..++++|++|.++|+++
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~ 36 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISD 36 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCCceEEEeCCH
Confidence 58999955 79999999999999999999875
No 449
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=78.80 E-value=2.4 Score=42.48 Aligned_cols=30 Identities=40% Similarity=0.540 Sum_probs=26.8
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (584)
Q Consensus 113 VVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~ 142 (584)
|+|.|| |+|..+|..|+++|++|.+++|+.
T Consensus 3 vlItGas~gIG~aia~~l~~~G~~V~~~~r~~ 34 (259)
T PRK08340 3 VLVTASSRGIGFNVARELLKKGARVVISSRNE 34 (259)
T ss_pred EEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 789994 689999999999999999998764
No 450
>PRK08303 short chain dehydrogenase; Provisional
Probab=78.75 E-value=2.5 Score=44.04 Aligned_cols=31 Identities=32% Similarity=0.352 Sum_probs=27.9
Q ss_pred cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945 112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (584)
Q Consensus 112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~ 142 (584)
=|+|.|| |+|..+|..|++.|++|++++|+.
T Consensus 10 ~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~ 42 (305)
T PRK08303 10 VALVAGATRGAGRGIAVELGAAGATVYVTGRST 42 (305)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeccc
Confidence 5888995 799999999999999999999875
No 451
>PRK06101 short chain dehydrogenase; Provisional
Probab=78.73 E-value=2.6 Score=41.76 Aligned_cols=30 Identities=27% Similarity=0.438 Sum_probs=26.7
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (584)
Q Consensus 113 VVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~ 142 (584)
|+|.|| |+|..+|..|+++|++|++++|++
T Consensus 4 vlItGas~giG~~la~~L~~~G~~V~~~~r~~ 35 (240)
T PRK06101 4 VLITGATSGIGKQLALDYAKQGWQVIACGRNQ 35 (240)
T ss_pred EEEEcCCcHHHHHHHHHHHhCCCEEEEEECCH
Confidence 789994 689999999999999999998863
No 452
>PRK07890 short chain dehydrogenase; Provisional
Probab=78.66 E-value=2.4 Score=42.24 Aligned_cols=31 Identities=29% Similarity=0.362 Sum_probs=27.7
Q ss_pred cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945 112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (584)
Q Consensus 112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~ 142 (584)
-|+|.|| ++|..+|..|+++|++|++++|.+
T Consensus 7 ~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~ 39 (258)
T PRK07890 7 VVVVSGVGPGLGRTLAVRAARAGADVVLAARTA 39 (258)
T ss_pred EEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCH
Confidence 5899995 689999999999999999999864
No 453
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=78.60 E-value=2.5 Score=42.18 Aligned_cols=31 Identities=23% Similarity=0.348 Sum_probs=27.5
Q ss_pred cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945 112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (584)
Q Consensus 112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~ 142 (584)
-|+|.|| ++|..+|..|+++|++|.+++|..
T Consensus 8 ~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~ 40 (257)
T PRK07067 8 VALLTGAASGIGEAVAERYLAEGARVVIADIKP 40 (257)
T ss_pred EEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCH
Confidence 4899994 689999999999999999998764
No 454
>PRK08265 short chain dehydrogenase; Provisional
Probab=78.35 E-value=2.6 Score=42.39 Aligned_cols=31 Identities=45% Similarity=0.610 Sum_probs=27.8
Q ss_pred cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945 112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (584)
Q Consensus 112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~ 142 (584)
-++|.|| ++|..+|..|+++|++|++++|+.
T Consensus 8 ~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~ 40 (261)
T PRK08265 8 VAIVTGGATLIGAAVARALVAAGARVAIVDIDA 40 (261)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 5889994 789999999999999999999874
No 455
>PRK07063 short chain dehydrogenase; Provisional
Probab=78.05 E-value=2.7 Score=42.07 Aligned_cols=31 Identities=29% Similarity=0.449 Sum_probs=27.6
Q ss_pred cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945 112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (584)
Q Consensus 112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~ 142 (584)
-|+|.|| |+|..+|..|+++|++|++++|..
T Consensus 9 ~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~ 41 (260)
T PRK07063 9 VALVTGAAQGIGAAIARAFAREGAAVALADLDA 41 (260)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 5899994 689999999999999999999864
No 456
>PRK06153 hypothetical protein; Provisional
Probab=77.93 E-value=2.5 Score=45.55 Aligned_cols=33 Identities=12% Similarity=0.356 Sum_probs=29.4
Q ss_pred ccEEEEc-chHHHHHHHHHHhCCC-eEEEEcCCCC
Q 007945 111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERNTL 143 (584)
Q Consensus 111 yDVVIVG-Gg~Gl~~Aa~LAr~Gl-rVlLIEr~~~ 143 (584)
.-|+||| ||+|+.+|-.||+.|+ ++.|+|....
T Consensus 177 ~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~V 211 (393)
T PRK06153 177 QRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDDF 211 (393)
T ss_pred CcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCEe
Confidence 5899999 8999999999999998 7889997753
No 457
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=77.92 E-value=17 Score=44.30 Aligned_cols=32 Identities=34% Similarity=0.400 Sum_probs=26.0
Q ss_pred ccEEEEcch-HHHHHHHHHHhC-CC-eEEEEcCCC
Q 007945 111 FDVIVCGGT-LGIFIATALSFK-GL-RVAIVERNT 142 (584)
Q Consensus 111 yDVVIVGGg-~Gl~~Aa~LAr~-Gl-rVlLIEr~~ 142 (584)
-.|+||||| .|+-+|..+.+. |. +|.+|+|..
T Consensus 667 K~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~ 701 (1012)
T TIGR03315 667 KHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT 701 (1012)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccC
Confidence 379999976 688888877775 86 799999875
No 458
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=77.90 E-value=15 Score=44.63 Aligned_cols=31 Identities=35% Similarity=0.399 Sum_probs=25.5
Q ss_pred cEEEEcch-HHHHHHHHHHhC-C-CeEEEEcCCC
Q 007945 112 DVIVCGGT-LGIFIATALSFK-G-LRVAIVERNT 142 (584)
Q Consensus 112 DVVIVGGg-~Gl~~Aa~LAr~-G-lrVlLIEr~~ 142 (584)
.|+||||| +|+-+|..+.+. | -+|.++.|..
T Consensus 670 rVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~ 703 (1019)
T PRK09853 670 HVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT 703 (1019)
T ss_pred EEEEECCChHHHHHHHHHHhcCCCceEEEEEccC
Confidence 69999976 688888877776 5 3899999875
No 459
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=77.80 E-value=2.9 Score=41.97 Aligned_cols=32 Identities=28% Similarity=0.369 Sum_probs=28.1
Q ss_pred cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCCC
Q 007945 112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNTL 143 (584)
Q Consensus 112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~~ 143 (584)
-|+|.|| ++|..+|..|+++|++|+++++...
T Consensus 11 ~vlItG~s~gIG~~la~~l~~~G~~v~~~~~~~~ 44 (266)
T PRK06171 11 IIIVTGGSSGIGLAIVKELLANGANVVNADIHGG 44 (266)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCcc
Confidence 4889994 6899999999999999999998764
No 460
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=77.55 E-value=2.5 Score=40.53 Aligned_cols=32 Identities=38% Similarity=0.457 Sum_probs=26.1
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 007945 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (584)
Q Consensus 111 yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~ 142 (584)
-.|+||||| .|.-+|..|++.|-+|.++=|.+
T Consensus 168 k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~ 200 (203)
T PF13738_consen 168 KRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSP 200 (203)
T ss_dssp SEEEEE--SHHHHHHHHHHTTTCSEEEEEESS-
T ss_pred CcEEEEcChHHHHHHHHHHHhhCCEEEEEecCC
Confidence 469999976 69999999999999999998875
No 461
>PRK06057 short chain dehydrogenase; Provisional
Probab=77.54 E-value=2.9 Score=41.81 Aligned_cols=31 Identities=23% Similarity=0.442 Sum_probs=27.6
Q ss_pred cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945 112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (584)
Q Consensus 112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~ 142 (584)
-|+|+|| ++|..+|..|+++|++|.+++|..
T Consensus 9 ~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~ 41 (255)
T PRK06057 9 VAVITGGGSGIGLATARRLAAEGATVVVGDIDP 41 (255)
T ss_pred EEEEECCCchHHHHHHHHHHHcCCEEEEEeCCH
Confidence 5899995 689999999999999999998764
No 462
>PRK06924 short chain dehydrogenase; Provisional
Probab=77.52 E-value=3 Score=41.36 Aligned_cols=31 Identities=39% Similarity=0.433 Sum_probs=27.1
Q ss_pred cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945 112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (584)
Q Consensus 112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~ 142 (584)
-|+|.|| ++|..+|-.|+++|++|+++.|..
T Consensus 3 ~vlItGasggiG~~ia~~l~~~g~~V~~~~r~~ 35 (251)
T PRK06924 3 YVIITGTSQGLGEAIANQLLEKGTHVISISRTE 35 (251)
T ss_pred EEEEecCCchHHHHHHHHHHhcCCEEEEEeCCc
Confidence 3789994 689999999999999999998764
No 463
>PRK05866 short chain dehydrogenase; Provisional
Probab=77.49 E-value=2.9 Score=43.15 Aligned_cols=31 Identities=23% Similarity=0.403 Sum_probs=27.5
Q ss_pred cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945 112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (584)
Q Consensus 112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~ 142 (584)
-|+|.|| |+|..+|..|+++|++|.+++|+.
T Consensus 42 ~vlItGasggIG~~la~~La~~G~~Vi~~~R~~ 74 (293)
T PRK05866 42 RILLTGASSGIGEAAAEQFARRGATVVAVARRE 74 (293)
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 4899994 789999999999999999999873
No 464
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=77.38 E-value=3.5 Score=45.07 Aligned_cols=35 Identities=34% Similarity=0.505 Sum_probs=31.6
Q ss_pred CCCccEEEEcchH-HHHHHHHHHhCCCeEEEEcCCC
Q 007945 108 VGTFDVIVCGGTL-GIFIATALSFKGLRVAIVERNT 142 (584)
Q Consensus 108 ~~~yDVVIVGGg~-Gl~~Aa~LAr~GlrVlLIEr~~ 142 (584)
+..||++|||||- |+++|+.|+|.|.+|+++||+.
T Consensus 12 ~~~ydavvig~GhnGL~aaayl~r~g~~V~vlerrh 47 (561)
T KOG4254|consen 12 KPEYDAVVIGGGHNGLTAAAYLARYGQSVAVLERRH 47 (561)
T ss_pred CcccceEEecCCccchhHHHHHHhcCcceEEEEEee
Confidence 4479999999885 9999999999999999999983
No 465
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=77.25 E-value=3 Score=41.72 Aligned_cols=30 Identities=27% Similarity=0.236 Sum_probs=26.6
Q ss_pred cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCC
Q 007945 112 DVIVCGG--TLGIFIATALSFKGLRVAIVERN 141 (584)
Q Consensus 112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~ 141 (584)
-++|.|| |+|..+|..|+++|++|++++|.
T Consensus 10 ~~lItGas~gIG~aia~~l~~~G~~vv~~~~~ 41 (251)
T PRK12481 10 VAIITGCNTGLGQGMAIGLAKAGADIVGVGVA 41 (251)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEecCc
Confidence 4889994 78999999999999999999765
No 466
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=77.23 E-value=2.7 Score=45.24 Aligned_cols=32 Identities=31% Similarity=0.357 Sum_probs=28.2
Q ss_pred ccEEEEc-chHHHHHHHHHHhCCCeEEEEcCCC
Q 007945 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNT 142 (584)
Q Consensus 111 yDVVIVG-Gg~Gl~~Aa~LAr~GlrVlLIEr~~ 142 (584)
.+|+|+| |++|..+|..+.+.|.+|.++|+.+
T Consensus 168 ~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~ 200 (370)
T TIGR00518 168 GDVTIIGGGVVGTNAAKMANGLGATVTILDINI 200 (370)
T ss_pred ceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 5799999 5689999999999999999999864
No 467
>PRK07024 short chain dehydrogenase; Provisional
Probab=77.20 E-value=3.1 Score=41.65 Aligned_cols=31 Identities=26% Similarity=0.477 Sum_probs=27.7
Q ss_pred cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945 112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (584)
Q Consensus 112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~ 142 (584)
.|+|.|| ++|..+|..|+++|++|.+++|+.
T Consensus 4 ~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~ 36 (257)
T PRK07024 4 KVFITGASSGIGQALAREYARQGATLGLVARRT 36 (257)
T ss_pred EEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 5889994 689999999999999999999874
No 468
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=77.20 E-value=2.9 Score=45.68 Aligned_cols=32 Identities=31% Similarity=0.391 Sum_probs=28.4
Q ss_pred ccEEEEc-chHHHHHHHHHHhCCCeEEEEcCCC
Q 007945 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNT 142 (584)
Q Consensus 111 yDVVIVG-Gg~Gl~~Aa~LAr~GlrVlLIEr~~ 142 (584)
-.|+|+| |++|..+|..+...|.+|+++|+.+
T Consensus 203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~ 235 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP 235 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence 3799999 6789999999999999999999874
No 469
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=77.18 E-value=2.4 Score=47.80 Aligned_cols=117 Identities=19% Similarity=0.256 Sum_probs=66.7
Q ss_pred CCccCCCCcccccc--------c--cccceeeeccCCCCChhHHHHHhhhccCCccccCchh----hhHHHHHHHHHHHH
Q 007945 10 NGVSHFPSQVHGKR--------K--VSQRCICLQPQAAVPSRTRRIMESISVSGEVGGAGGA----YSYDALKRLDQIWS 75 (584)
Q Consensus 10 ~~~~~~~~~~~~~~--------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~d~~~~ 75 (584)
|-+++|++++-.+| + -.|..+|...|- -|..+-|.|..|.-..--.|-+ .+-+..+++|+...
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ilt~~qmr~lD~~ai 104 (544)
T PLN02918 28 HSSSLSSSPSPTQRFLTPSQGSRLPPRRRALCTKSQD---PRWRRAMASLAVIPNMQDSGSPPLSYLTQREAAEIDETLM 104 (544)
T ss_pred CcccCCCCCCccccccCccccccCCCCchhhcccccC---chHHhhhhhhcccccccccCCCceEEeCHHHHHHHHHHHH
Confidence 34777776665555 1 123355555554 3677889998886655444443 26788999999884
Q ss_pred hhccccCcc-------cccceEEecCCCCCCCCCCCCCCCCCccEEEEc-c--hH-HHHHHHHHHhCCCeEEEEc
Q 007945 76 NICSTQTVQ-------QEIQQVVSSNAGLFSQSDLSDKAVGTFDVIVCG-G--TL-GIFIATALSFKGLRVAIVE 139 (584)
Q Consensus 76 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~yDVVIVG-G--g~-Gl~~Aa~LAr~GlrVlLIE 139 (584)
.-. +.... ..+-+.|...- + .. ...-=+|+|| | |. |+.+|..|+..|++|.|+-
T Consensus 105 ~~~-Gis~~~LME~AG~avA~~I~~~~-~--~~------~~~~VlVlcGpGNNGGDGLVaAR~L~~~G~~V~V~~ 169 (544)
T PLN02918 105 GPL-GFSVDQLMELAGLSVAASIAEVY-K--PG------EYSRVLAICGPGNNGGDGLVAARHLHHFGYKPFVCY 169 (544)
T ss_pred Hhc-CCCHHHHHHHHHHHHHHHHHHhc-c--cc------cCCEEEEEECCCcCHHHHHHHHHHHHHCCCceEEEE
Confidence 321 11100 11112222110 0 00 0011246678 5 44 9999999999999999885
No 470
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=77.08 E-value=2.9 Score=46.02 Aligned_cols=32 Identities=25% Similarity=0.390 Sum_probs=28.5
Q ss_pred ccEEEEc-chHHHHHHHHHHhCCCeEEEEcCCC
Q 007945 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNT 142 (584)
Q Consensus 111 yDVVIVG-Gg~Gl~~Aa~LAr~GlrVlLIEr~~ 142 (584)
--|+|+| |+.|.++|..|+++|++|.+.|...
T Consensus 7 ~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 39 (448)
T PRK03803 7 GLHIVVGLGKTGLSVVRFLARQGIPFAVMDSRE 39 (448)
T ss_pred CeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCC
Confidence 4589999 8899998889999999999999764
No 471
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=77.07 E-value=2.9 Score=41.57 Aligned_cols=30 Identities=27% Similarity=0.407 Sum_probs=26.6
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (584)
Q Consensus 113 VVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~ 142 (584)
|+|.|| ++|..+|..|+++|++|.+++|++
T Consensus 3 vlItGasg~iG~~la~~l~~~G~~V~~~~r~~ 34 (248)
T PRK10538 3 VLVTGATAGFGECITRRFIQQGHKVIATGRRQ 34 (248)
T ss_pred EEEECCCchHHHHHHHHHHHCCCEEEEEECCH
Confidence 688994 689999999999999999999864
No 472
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=77.02 E-value=2.4 Score=44.87 Aligned_cols=34 Identities=24% Similarity=0.199 Sum_probs=28.8
Q ss_pred CccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCC
Q 007945 110 TFDVIVCGGT-LGIFIATALSFKGLRVAIVERNTLK 144 (584)
Q Consensus 110 ~yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~ 144 (584)
.-+|.|||.| +|+++|..|+++ .+|+|+|.....
T Consensus 8 r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rl 42 (447)
T COG2907 8 RRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRL 42 (447)
T ss_pred CcceEEEcccchhhhhHHhhhcc-cceEEEeccccc
Confidence 4699999955 799999999986 799999987654
No 473
>PRK05854 short chain dehydrogenase; Provisional
Probab=77.00 E-value=3 Score=43.46 Aligned_cols=31 Identities=32% Similarity=0.459 Sum_probs=27.5
Q ss_pred cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945 112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (584)
Q Consensus 112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~ 142 (584)
-+||.|| |+|..+|..|+++|++|+++.|+.
T Consensus 16 ~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~ 48 (313)
T PRK05854 16 RAVVTGASDGLGLGLARRLAAAGAEVILPVRNR 48 (313)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 5889994 799999999999999999998764
No 474
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=76.99 E-value=3.1 Score=41.50 Aligned_cols=31 Identities=23% Similarity=0.513 Sum_probs=27.6
Q ss_pred cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945 112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (584)
Q Consensus 112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~ 142 (584)
-++|.|| ++|..+|..|+++|++|++++|..
T Consensus 11 ~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~ 43 (254)
T PRK08085 11 NILITGSAQGIGFLLATGLAEYGAEIIINDITA 43 (254)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCEEEEEcCCH
Confidence 5899994 689999999999999999998764
No 475
>PRK06720 hypothetical protein; Provisional
Probab=76.95 E-value=3.4 Score=39.26 Aligned_cols=32 Identities=28% Similarity=0.373 Sum_probs=27.8
Q ss_pred ccEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945 111 FDVIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (584)
Q Consensus 111 yDVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~ 142 (584)
--++|.|| |+|..+|..|+++|.+|.++++..
T Consensus 17 k~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~ 50 (169)
T PRK06720 17 KVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQ 50 (169)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEEEEECCH
Confidence 36889994 689999999999999999999763
No 476
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=76.84 E-value=3.1 Score=45.74 Aligned_cols=34 Identities=18% Similarity=0.206 Sum_probs=27.8
Q ss_pred EEeCceEEEEEEeC-CeEEEEEcCCcEEEccEEEE
Q 007945 222 IFEGYSVSSICTYE-NAAVLLLAEGKILSSHLIID 255 (584)
Q Consensus 222 i~~~t~v~~v~~~~-~gv~V~~~~G~~i~ArlVId 255 (584)
+..+++|..+.-.+ +.++|++.||+.+.|+-||.
T Consensus 246 ~~~~~rv~~I~~~~~~~v~l~c~dg~v~~adhVIv 280 (498)
T KOG0685|consen 246 IHLNTRVENINWKNTGEVKLRCSDGEVFHADHVIV 280 (498)
T ss_pred hcccccceeeccCCCCcEEEEEeCCcEEeccEEEE
Confidence 44458899987764 46889999999999999994
No 477
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=76.73 E-value=2.9 Score=43.53 Aligned_cols=32 Identities=25% Similarity=0.416 Sum_probs=28.1
Q ss_pred ccEEEEcch-HHHHHHHHHHhCCCeEEEEcCCC
Q 007945 111 FDVIVCGGT-LGIFIATALSFKGLRVAIVERNT 142 (584)
Q Consensus 111 yDVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~ 142 (584)
-.|.|||+| .|..+|..|++.|++|.++|+++
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~ 37 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVME 37 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 368999955 79999999999999999999765
No 478
>PRK06179 short chain dehydrogenase; Provisional
Probab=76.68 E-value=3.1 Score=41.85 Aligned_cols=31 Identities=32% Similarity=0.357 Sum_probs=27.5
Q ss_pred cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945 112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (584)
Q Consensus 112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~ 142 (584)
-|+|.|| ++|..+|..|+++|++|.++.|..
T Consensus 6 ~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~~ 38 (270)
T PRK06179 6 VALVTGASSGIGRATAEKLARAGYRVFGTSRNP 38 (270)
T ss_pred EEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence 4889994 689999999999999999999874
No 479
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=76.67 E-value=3.3 Score=42.49 Aligned_cols=32 Identities=22% Similarity=0.434 Sum_probs=28.9
Q ss_pred ccEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945 111 FDVIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (584)
Q Consensus 111 yDVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~ 142 (584)
.-++|-|+ |+|..+|-.||++|++|+|+-|+.
T Consensus 7 ~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~ 40 (265)
T COG0300 7 KTALITGASSGIGAELAKQLARRGYNLILVARRE 40 (265)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcH
Confidence 46899994 899999999999999999998874
No 480
>PRK07102 short chain dehydrogenase; Provisional
Probab=76.65 E-value=3.1 Score=41.19 Aligned_cols=30 Identities=17% Similarity=0.357 Sum_probs=27.0
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (584)
Q Consensus 113 VVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~ 142 (584)
|+|.|| ++|..+|..|+++|++|++++|+.
T Consensus 4 vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~ 35 (243)
T PRK07102 4 ILIIGATSDIARACARRYAAAGARLYLAARDV 35 (243)
T ss_pred EEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 789994 689999999999999999999874
No 481
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=76.62 E-value=3.7 Score=40.24 Aligned_cols=31 Identities=29% Similarity=0.443 Sum_probs=27.9
Q ss_pred cEEEEc-chHHHHHHHHHHhCCCeEEEEcCCC
Q 007945 112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNT 142 (584)
Q Consensus 112 DVVIVG-Gg~Gl~~Aa~LAr~GlrVlLIEr~~ 142 (584)
-|+|+| |..|..+|..|.+.|.+|++.|+++
T Consensus 30 ~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~ 61 (200)
T cd01075 30 TVAVQGLGKVGYKLAEHLLEEGAKLIVADINE 61 (200)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 599999 6689999999999999999998763
No 482
>PRK08267 short chain dehydrogenase; Provisional
Probab=76.56 E-value=3.1 Score=41.67 Aligned_cols=30 Identities=23% Similarity=0.393 Sum_probs=26.8
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (584)
Q Consensus 113 VVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~ 142 (584)
++|.|| ++|..+|..|+++|++|.+++|+.
T Consensus 4 vlItGasg~iG~~la~~l~~~G~~V~~~~r~~ 35 (260)
T PRK08267 4 IFITGAASGIGRATALLFAAEGWRVGAYDINE 35 (260)
T ss_pred EEEeCCCchHHHHHHHHHHHCCCeEEEEeCCH
Confidence 789995 689999999999999999998764
No 483
>PRK07326 short chain dehydrogenase; Provisional
Probab=76.49 E-value=3.1 Score=40.86 Aligned_cols=31 Identities=39% Similarity=0.627 Sum_probs=27.2
Q ss_pred cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945 112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (584)
Q Consensus 112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~ 142 (584)
=|+|.|| ++|..+|..|+++|++|.++.|.+
T Consensus 8 ~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~ 40 (237)
T PRK07326 8 VALITGGSKGIGFAIAEALLAEGYKVAITARDQ 40 (237)
T ss_pred EEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCH
Confidence 5889994 589999999999999999998864
No 484
>PRK08017 oxidoreductase; Provisional
Probab=76.48 E-value=3.1 Score=41.30 Aligned_cols=31 Identities=29% Similarity=0.435 Sum_probs=27.4
Q ss_pred cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945 112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (584)
Q Consensus 112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~ 142 (584)
-|+|.|| ++|..+|..|+++|++|.+++|+.
T Consensus 4 ~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~ 36 (256)
T PRK08017 4 SVLITGCSSGIGLEAALELKRRGYRVLAACRKP 36 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4899994 689999999999999999998864
No 485
>PRK07023 short chain dehydrogenase; Provisional
Probab=76.38 E-value=3.2 Score=41.02 Aligned_cols=31 Identities=35% Similarity=0.401 Sum_probs=27.3
Q ss_pred cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945 112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (584)
Q Consensus 112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~ 142 (584)
-++|.|| ++|..+|..|+++|++|+++.|+.
T Consensus 3 ~vlItGasggiG~~ia~~l~~~G~~v~~~~r~~ 35 (243)
T PRK07023 3 RAIVTGHSRGLGAALAEQLLQPGIAVLGVARSR 35 (243)
T ss_pred eEEEecCCcchHHHHHHHHHhCCCEEEEEecCc
Confidence 4889994 689999999999999999998764
No 486
>PRK06398 aldose dehydrogenase; Validated
Probab=76.36 E-value=3.4 Score=41.51 Aligned_cols=32 Identities=25% Similarity=0.305 Sum_probs=28.5
Q ss_pred cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCCC
Q 007945 112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNTL 143 (584)
Q Consensus 112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~~ 143 (584)
-|+|.|| |+|..+|..|+++|++|++++|...
T Consensus 8 ~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~~ 41 (258)
T PRK06398 8 VAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEP 41 (258)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCeEEEEeCCcc
Confidence 5899995 7899999999999999999998753
No 487
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=76.33 E-value=14 Score=40.42 Aligned_cols=60 Identities=25% Similarity=0.374 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCc--EEEccEEEEecCCCh-HHHhHh
Q 007945 206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGK--ILSSHLIIDAMGNFS-PVVKQI 267 (584)
Q Consensus 206 ~L~~~L~~~a~~~G~~i~~~t~v~~v~~~~~gv~V~~~~G~--~i~ArlVIdADG~~S-~v~rql 267 (584)
+|.+...+++.+.|+.+..++.|..+. +....+.+.+|+ +|-.-++|-|+|... |+.+-+
T Consensus 274 rl~~yae~~f~~~~I~~~~~t~Vk~V~--~~~I~~~~~~g~~~~iPYG~lVWatG~~~rp~~k~l 336 (491)
T KOG2495|consen 274 RLVEYAENQFVRDGIDLDTGTMVKKVT--EKTIHAKTKDGEIEEIPYGLLVWATGNGPRPVIKDL 336 (491)
T ss_pred HHHHHHHHHhhhccceeecccEEEeec--CcEEEEEcCCCceeeecceEEEecCCCCCchhhhhH
Confidence 455666677777899999999998863 445566665664 688889999999764 354443
No 488
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=76.33 E-value=3.5 Score=42.87 Aligned_cols=51 Identities=25% Similarity=0.440 Sum_probs=37.3
Q ss_pred cEEEEc-chHHHHHHHHHHhCCC-eEEEEcCCCCCCCcccccCCHHHHHHHHHcCCC
Q 007945 112 DVIVCG-GTLGIFIATALSFKGL-RVAIVERNTLKGREQEWNISRKELLELVESGIL 166 (584)
Q Consensus 112 DVVIVG-Gg~Gl~~Aa~LAr~Gl-rVlLIEr~~~~~~~r~w~Is~~~l~~L~~lGl~ 166 (584)
=||||| ||+|.-.+..|.|.|+ +..++|-....- -.+.++.+..|.+.|.-
T Consensus 76 yVVVVG~GgVGSwv~nmL~RSG~qKi~iVDfdqVSl----sSLNrHs~Atl~DVG~P 128 (430)
T KOG2018|consen 76 YVVVVGAGGVGSWVANMLLRSGVQKIRIVDFDQVSL----SSLNRHSCATLADVGTP 128 (430)
T ss_pred EEEEEecCchhHHHHHHHHHhcCceEEEechhhccH----hhhhhhhhhhHhhcCCc
Confidence 388889 7899999999999998 677887554211 12456677888888843
No 489
>PRK08643 acetoin reductase; Validated
Probab=76.32 E-value=3.2 Score=41.36 Aligned_cols=31 Identities=39% Similarity=0.555 Sum_probs=27.2
Q ss_pred cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945 112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (584)
Q Consensus 112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~ 142 (584)
-++|+|| ++|..+|..|+++|++|.+++|..
T Consensus 4 ~~lItGas~giG~~la~~l~~~G~~v~~~~r~~ 36 (256)
T PRK08643 4 VALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNE 36 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4788894 689999999999999999998764
No 490
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=76.27 E-value=3.2 Score=45.52 Aligned_cols=31 Identities=26% Similarity=0.318 Sum_probs=27.6
Q ss_pred cEEEEc-chHHHHHHHHHHhCCCeEEEEcCCC
Q 007945 112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNT 142 (584)
Q Consensus 112 DVVIVG-Gg~Gl~~Aa~LAr~GlrVlLIEr~~ 142 (584)
-|+|+| |+.|.++|..|+++|++|.+.|+..
T Consensus 7 ~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~ 38 (447)
T PRK02472 7 KVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 38 (447)
T ss_pred EEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 489999 5789999999999999999999775
No 491
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=76.23 E-value=3.3 Score=41.36 Aligned_cols=30 Identities=43% Similarity=0.775 Sum_probs=26.8
Q ss_pred EEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945 113 VIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (584)
Q Consensus 113 VVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~ 142 (584)
|+|.|| ++|..+|..|+++|++|.+++|..
T Consensus 5 ilItG~~~~IG~~la~~l~~~g~~vi~~~r~~ 36 (259)
T PRK12384 5 AVVIGGGQTLGAFLCHGLAEEGYRVAVADINS 36 (259)
T ss_pred EEEECCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 889995 589999999999999999999764
No 492
>PRK06114 short chain dehydrogenase; Provisional
Probab=76.21 E-value=3.6 Score=41.14 Aligned_cols=31 Identities=32% Similarity=0.398 Sum_probs=27.6
Q ss_pred cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945 112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (584)
Q Consensus 112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~ 142 (584)
-++|.|| |+|..+|..|+++|++|++++|..
T Consensus 10 ~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~ 42 (254)
T PRK06114 10 VAFVTGAGSGIGQRIAIGLAQAGADVALFDLRT 42 (254)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCCc
Confidence 5888894 689999999999999999999864
No 493
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=76.12 E-value=3.5 Score=40.82 Aligned_cols=31 Identities=29% Similarity=0.310 Sum_probs=27.5
Q ss_pred cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945 112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (584)
Q Consensus 112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~ 142 (584)
-|+|.|| ++|..+|..|+++|++|+++.|..
T Consensus 7 ~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~ 39 (248)
T TIGR01832 7 VALVTGANTGLGQGIAVGLAEAGADIVGAGRSE 39 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEcCch
Confidence 5899994 689999999999999999998753
No 494
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=76.06 E-value=3.2 Score=41.62 Aligned_cols=31 Identities=29% Similarity=0.549 Sum_probs=27.5
Q ss_pred cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945 112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (584)
Q Consensus 112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~ 142 (584)
-++|.|| |+|..+|..|+++|++|.+++|..
T Consensus 8 ~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~ 40 (263)
T PRK06200 8 VALITGGGSGIGRALVERFLAEGARVAVLERSA 40 (263)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 5889995 689999999999999999999864
No 495
>PRK07035 short chain dehydrogenase; Provisional
Probab=75.94 E-value=3.4 Score=41.11 Aligned_cols=31 Identities=29% Similarity=0.397 Sum_probs=27.6
Q ss_pred cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945 112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (584)
Q Consensus 112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~ 142 (584)
-|+|.|| ++|..+|..|+++|.+|++++|..
T Consensus 10 ~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~ 42 (252)
T PRK07035 10 IALVTGASRGIGEAIAKLLAQQGAHVIVSSRKL 42 (252)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 5899994 689999999999999999999864
No 496
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=75.93 E-value=3.3 Score=40.93 Aligned_cols=31 Identities=35% Similarity=0.506 Sum_probs=28.0
Q ss_pred cEEEEcc--hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945 112 DVIVCGG--TLGIFIATALSFKGLRVAIVERNT 142 (584)
Q Consensus 112 DVVIVGG--g~Gl~~Aa~LAr~GlrVlLIEr~~ 142 (584)
-|+|.|| ++|..+|..|+++|++|.+++|.+
T Consensus 7 ~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~ 39 (251)
T PRK07231 7 VAIVTGASSGIGEGIARRFAAEGARVVVTDRNE 39 (251)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 5899994 689999999999999999999875
No 497
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=75.92 E-value=3.3 Score=44.29 Aligned_cols=32 Identities=31% Similarity=0.429 Sum_probs=28.7
Q ss_pred ccEEEEc-chHHHHHHHHHHhCCC-eEEEEcCCC
Q 007945 111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERNT 142 (584)
Q Consensus 111 yDVVIVG-Gg~Gl~~Aa~LAr~Gl-rVlLIEr~~ 142 (584)
.-|+|+| ||+|+.+|..|++.|+ ++.++|...
T Consensus 29 ~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 29 AKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 5799999 7899999999999999 788998774
No 498
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=75.90 E-value=3.1 Score=43.38 Aligned_cols=31 Identities=26% Similarity=0.424 Sum_probs=27.7
Q ss_pred cEEEEcc-hHHHHHHHHHHhCCCeEEEEcCCC
Q 007945 112 DVIVCGG-TLGIFIATALSFKGLRVAIVERNT 142 (584)
Q Consensus 112 DVVIVGG-g~Gl~~Aa~LAr~GlrVlLIEr~~ 142 (584)
.|.|+|+ ..|..+|..|++.|+.|.+++|.+
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~ 34 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDP 34 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 5899995 579999999999999999999864
No 499
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=75.90 E-value=7.7 Score=42.57 Aligned_cols=34 Identities=24% Similarity=0.326 Sum_probs=29.6
Q ss_pred cEEEEcch-HHHHHHHHHHhCCCeEEEEcCCCCCC
Q 007945 112 DVIVCGGT-LGIFIATALSFKGLRVAIVERNTLKG 145 (584)
Q Consensus 112 DVVIVGGg-~Gl~~Aa~LAr~GlrVlLIEr~~~~~ 145 (584)
+|+||||| +|+++|..|+++|++|+|+|+++..|
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~G 35 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLG 35 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence 58999975 69999999999999999999987543
No 500
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=75.89 E-value=3.3 Score=44.82 Aligned_cols=31 Identities=32% Similarity=0.589 Sum_probs=28.7
Q ss_pred cEEEEc-chHHHHHHHHHHhCC-CeEEEEcCCC
Q 007945 112 DVIVCG-GTLGIFIATALSFKG-LRVAIVERNT 142 (584)
Q Consensus 112 DVVIVG-Gg~Gl~~Aa~LAr~G-lrVlLIEr~~ 142 (584)
+|+|+| |++|..+|..||++| .+|++.+|..
T Consensus 3 ~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~ 35 (389)
T COG1748 3 KILVIGAGGVGSVVAHKLAQNGDGEVTIADRSK 35 (389)
T ss_pred cEEEECCchhHHHHHHHHHhCCCceEEEEeCCH
Confidence 799999 579999999999999 9999999985
Done!