BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007947
(583 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KQX|A Chain A, Structure Of A Protease 1
pdb|3KQX|B Chain B, Structure Of A Protease 1
pdb|3KQX|C Chain C, Structure Of A Protease 1
pdb|3KQX|D Chain D, Structure Of A Protease 1
pdb|3KQX|E Chain E, Structure Of A Protease 1
pdb|3KQX|F Chain F, Structure Of A Protease 1
pdb|3KQX|G Chain G, Structure Of A Protease 1
pdb|3KQX|H Chain H, Structure Of A Protease 1
pdb|3KQX|I Chain I, Structure Of A Protease 1
pdb|3KQX|J Chain J, Structure Of A Protease 1
pdb|3KQX|K Chain K, Structure Of A Protease 1
pdb|3KQX|L Chain L, Structure Of A Protease 1
pdb|3KQZ|A Chain A, Structure Of A Protease 2
pdb|3KQZ|B Chain B, Structure Of A Protease 2
pdb|3KQZ|C Chain C, Structure Of A Protease 2
pdb|3KQZ|D Chain D, Structure Of A Protease 2
pdb|3KQZ|E Chain E, Structure Of A Protease 2
pdb|3KQZ|F Chain F, Structure Of A Protease 2
pdb|3KQZ|G Chain G, Structure Of A Protease 2
pdb|3KQZ|H Chain H, Structure Of A Protease 2
pdb|3KQZ|I Chain I, Structure Of A Protease 2
pdb|3KQZ|J Chain J, Structure Of A Protease 2
pdb|3KQZ|K Chain K, Structure Of A Protease 2
pdb|3KQZ|L Chain L, Structure Of A Protease 2
pdb|3KR4|A Chain A, Structure Of A Protease 3
pdb|3KR4|B Chain B, Structure Of A Protease 3
pdb|3KR4|C Chain C, Structure Of A Protease 3
pdb|3KR4|D Chain D, Structure Of A Protease 3
pdb|3KR4|E Chain E, Structure Of A Protease 3
pdb|3KR4|F Chain F, Structure Of A Protease 3
pdb|3KR4|G Chain G, Structure Of A Protease 3
pdb|3KR4|H Chain H, Structure Of A Protease 3
pdb|3KR4|I Chain I, Structure Of A Protease 3
pdb|3KR4|J Chain J, Structure Of A Protease 3
pdb|3KR4|K Chain K, Structure Of A Protease 3
pdb|3KR4|L Chain L, Structure Of A Protease 3
pdb|3KR5|A Chain A, Structure Of A Protease 4
pdb|3KR5|B Chain B, Structure Of A Protease 4
pdb|3KR5|C Chain C, Structure Of A Protease 4
pdb|3KR5|D Chain D, Structure Of A Protease 4
pdb|3KR5|E Chain E, Structure Of A Protease 4
pdb|3KR5|F Chain F, Structure Of A Protease 4
pdb|3KR5|G Chain G, Structure Of A Protease 4
pdb|3KR5|H Chain H, Structure Of A Protease 4
pdb|3KR5|I Chain I, Structure Of A Protease 4
pdb|3KR5|J Chain J, Structure Of A Protease 4
pdb|3KR5|K Chain K, Structure Of A Protease 4
pdb|3KR5|L Chain L, Structure Of A Protease 4
pdb|3T8W|A Chain A, A Bestatin-Based Chemical Biology Strategy Reveals
Distinct Roles For Malaria M1- And M17-Family
Aminopeptidases
pdb|3T8W|B Chain B, A Bestatin-Based Chemical Biology Strategy Reveals
Distinct Roles For Malaria M1- And M17-Family
Aminopeptidases
pdb|3T8W|C Chain C, A Bestatin-Based Chemical Biology Strategy Reveals
Distinct Roles For Malaria M1- And M17-Family
Aminopeptidases
pdb|3T8W|D Chain D, A Bestatin-Based Chemical Biology Strategy Reveals
Distinct Roles For Malaria M1- And M17-Family
Aminopeptidases
pdb|3T8W|E Chain E, A Bestatin-Based Chemical Biology Strategy Reveals
Distinct Roles For Malaria M1- And M17-Family
Aminopeptidases
pdb|3T8W|F Chain F, A Bestatin-Based Chemical Biology Strategy Reveals
Distinct Roles For Malaria M1- And M17-Family
Aminopeptidases
pdb|3T8W|G Chain G, A Bestatin-Based Chemical Biology Strategy Reveals
Distinct Roles For Malaria M1- And M17-Family
Aminopeptidases
pdb|3T8W|H Chain H, A Bestatin-Based Chemical Biology Strategy Reveals
Distinct Roles For Malaria M1- And M17-Family
Aminopeptidases
pdb|3T8W|I Chain I, A Bestatin-Based Chemical Biology Strategy Reveals
Distinct Roles For Malaria M1- And M17-Family
Aminopeptidases
pdb|3T8W|J Chain J, A Bestatin-Based Chemical Biology Strategy Reveals
Distinct Roles For Malaria M1- And M17-Family
Aminopeptidases
pdb|3T8W|K Chain K, A Bestatin-Based Chemical Biology Strategy Reveals
Distinct Roles For Malaria M1- And M17-Family
Aminopeptidases
pdb|3T8W|L Chain L, A Bestatin-Based Chemical Biology Strategy Reveals
Distinct Roles For Malaria M1- And M17-Family
Aminopeptidases
Length = 528
Score = 281 bits (718), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 150/361 (41%), Positives = 221/361 (61%), Gaps = 8/361 (2%)
Query: 225 DNRYRSESKKPVSLKSVDIIG--LGTGPELEKKLKYAEHVSSAVIFGRELVNSPANVLTP 282
D R++S + K V+++ + +G + +++++ A + +L+ +P+N P
Sbjct: 166 DERFKS-TDKNVNMEYIKHLGVYINNADTYKEEVEKARVYYFGTYYASQLIAAPSNYCNP 224
Query: 283 AVLAEEASKVASMYSDVLSATILDIEKCKELKMGSYLGVAAASANLPHFIHLCYKPPGGS 342
L+ A ++A + L IL +++ +ELKMG+YL V S FIHL YK G
Sbjct: 225 VSLSNAAVELAQKLN--LEYKILGVKELEELKMGAYLSVGKGSMYPNKFIHLTYKSKG-D 281
Query: 343 AKIKLALVGKGLTFDSGGYNIKTGPGCLIENMKYDMXXXXXXXXXXXXXXQIKPPGVEVH 402
K K+ALVGKG+TFDSGGYN+K PG +I+ MK+DM +KP VE+H
Sbjct: 282 VKKKIALVGKGITFDSGGYNLKAAPGSMIDLMKFDMSGCAAVLGCAYCVGTLKPENVEIH 341
Query: 403 FIVAACENMISGTGMRPGDIITAANGKTIEVNNTDAEGRLTLADALIYACNQGVDKVIDL 462
F+ A CENM+S RPGDIITA+NGKTIEV NTDAEGRLTLADAL+YA GVD ++D+
Sbjct: 342 FLSAVCENMVSKNSYRPGDIITASNGKTIEVGNTDAEGRLTLADALVYAEKLGVDYIVDI 401
Query: 463 ATLTGACVVALGPSVAGAFTPSDDLANEVMAASQVSGEKIWRMPLEESYWEMMKSGVADM 522
ATLTGA + +LG S AG F +++L N+++ +S+ S E +W +P+ Y + S AD+
Sbjct: 402 ATLTGAMLYSLGTSYAGVFGNNEELINKILQSSKTSNEPVWWLPIINEYRATLNSKYADI 461
Query: 523 VN-TGGRQGGAITAALFLKQYVDEKVQWMHIDIAGPVWSEKMRSATGFGISTMVEWVLKN 581
+ + +I A+LFLK++V + W HIDIAG W+ K R GFG+ + E+VL +
Sbjct: 462 NQISSSVKASSIVASLFLKEFV-QNTAWAHIDIAGVSWNFKARKPKGFGVRLLTEFVLND 520
Query: 582 S 582
+
Sbjct: 521 A 521
>pdb|3JRU|B Chain B, Crystal Structure Of Leucyl Aminopeptidase (Pepa) From
Xoo0834, Xanthomonas Oryzae Pv. Oryzae Kacc10331
pdb|3JRU|A Chain A, Crystal Structure Of Leucyl Aminopeptidase (Pepa) From
Xoo0834, Xanthomonas Oryzae Pv. Oryzae Kacc10331
Length = 490
Score = 251 bits (641), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 177/475 (37%), Positives = 242/475 (50%), Gaps = 31/475 (6%)
Query: 119 KKLDAQLGGLLSEASSEEDFTGKAGQSTVIR-LPGIGSKRVGLIGLGQSASRAGDF---- 173
+ LD+ G L+ + D GK G +T++ LPG+ + RV ++GLG AG F
Sbjct: 35 QALDSASQGRLTALLARGDVAGKTGSTTLLHDLPGVAAPRVLVVGLGD----AGKFGVAP 90
Query: 174 --RSLGESXXXXXXXXXXXXXXXXLASSDGLSDESKLTAASAVASGTVLGTFEDNRYRSE 231
+++G++ + D AA + + RY +
Sbjct: 91 YLKAIGDATRALKTGAVGTALLTLTELTVKARD-----AAWNIRQAVTVSDHAAYRYTAT 145
Query: 232 SKKPVSLKSVDIIGLGT---GPELEKKLKYAEHVSSAVIFGRELVNSPANVLTPAVLAEE 288
K K VD GL T + + L + V F REL N P N TPA LA+
Sbjct: 146 LGK----KKVDETGLTTLAIAGDDARALAVGVATAEGVEFARELGNLPPNYCTPAYLADT 201
Query: 289 ASKVASMYSDVLSATILDIEKCKELKMGSYLGVAAASANLPHFIHLCYKPPGGSAKIKLA 348
A+ A + A ILD + + L MGS L VA SAN P I L + GG
Sbjct: 202 AAAFAGKFPGA-EAEILDEAQMEALGMGSLLSVARGSANRPRLIVLKWN--GGGDARPYV 258
Query: 349 LVGKGLTFDSGGYNIKTGPGCLIENMKYDMXXXXXXXXXXXXXXQIKPPGVEVHFIVAAC 408
LVGKG+TFD+GG N+KT G IE MKYDM + + P + + +V A
Sbjct: 259 LVGKGITFDTGGVNLKTQGG--IEEMKYDMCGGATVIGTFVATVKAELP-INLVVVVPAV 315
Query: 409 ENMISGTGMRPGDIITAANGKTIEVNNTDAEGRLTLADALIYACNQGVDKVIDLATLTGA 468
EN I G RP D+IT+ +GKTIEV NTDAEGRL L DAL YA + ++D+ATLTGA
Sbjct: 316 ENAIDGNAYRPSDVITSMSGKTIEVGNTDAEGRLILCDALTYAERFNPEALVDVATLTGA 375
Query: 469 CVVALGPSVAGAFTPSDDLANEVMAASQVSGEKIWRMPLEESYWEMMKSGVADMVNTGGR 528
C+VALG AG + DDLANE++AA + ++ WR+PL + Y ++ S AD+ N GGR
Sbjct: 376 CMVALGHQTAGLMSKHDDLANELLAAGEHVFDRAWRLPLWDEYQGLLDSTFADVYNIGGR 435
Query: 529 QGGAITAALFLKQYVDEKVQWMHIDIAGPVWSEKMRS-ATGFGISTMVEWVLKNS 582
GGAITA FL ++ E +W H+DIAG E R ATG + + +W+L +
Sbjct: 436 WGGAITAGCFLSRFT-ENQRWAHLDIAGVASDEGKRGMATGRPVGLLTQWLLDRA 489
>pdb|3H8E|A Chain A, Low Ph Native Structure Of Leucine Aminopeptidase From
Pseud Putida
pdb|3H8E|B Chain B, Low Ph Native Structure Of Leucine Aminopeptidase From
Pseud Putida
pdb|3H8F|A Chain A, High Ph Native Structure Of Leucine Aminopeptidase From
Pseudomonas Putida
pdb|3H8F|B Chain B, High Ph Native Structure Of Leucine Aminopeptidase From
Pseudomonas Putida
pdb|3H8F|C Chain C, High Ph Native Structure Of Leucine Aminopeptidase From
Pseudomonas Putida
pdb|3H8F|D Chain D, High Ph Native Structure Of Leucine Aminopeptidase From
Pseudomonas Putida
pdb|3H8F|E Chain E, High Ph Native Structure Of Leucine Aminopeptidase From
Pseudomonas Putida
pdb|3H8F|F Chain F, High Ph Native Structure Of Leucine Aminopeptidase From
Pseudomonas Putida
pdb|3H8G|F Chain F, Bestatin Complex Structure Of Leucine Aminopeptidase From
Pseudomonas Putida
pdb|3H8G|A Chain A, Bestatin Complex Structure Of Leucine Aminopeptidase From
Pseudomonas Putida
pdb|3H8G|B Chain B, Bestatin Complex Structure Of Leucine Aminopeptidase From
Pseudomonas Putida
pdb|3H8G|C Chain C, Bestatin Complex Structure Of Leucine Aminopeptidase From
Pseudomonas Putida
pdb|3H8G|D Chain D, Bestatin Complex Structure Of Leucine Aminopeptidase From
Pseudomonas Putida
pdb|3H8G|E Chain E, Bestatin Complex Structure Of Leucine Aminopeptidase From
Pseudomonas Putida
Length = 497
Score = 246 bits (629), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 161/480 (33%), Positives = 255/480 (53%), Gaps = 14/480 (2%)
Query: 109 DNSKFQNSILKKLDAQLGGLLSEASSEEDFTGKAGQSTVIR-LPGIGSKRVGLIGLGQSA 167
+N K ++ K +D G +S D GK GQ+ +++ L G+ ++RV L+G G+
Sbjct: 24 ENRKL-GAVAKAVDLASEGAISAVLKRGDLAGKPGQTLLLQNLQGLKAERVLLVGSGKDE 82
Query: 168 SRAGD--FRSLGESXXXXXXXXXXXXXXXXLASSDGLSDESKLTAASAVASGTVLGTFED 225
+ GD +R L S L + ++ +A + G +
Sbjct: 83 A-LGDRTWRKLVASVAGVLKGLNGADAVLALDDVAVNNRDAHYGKYRLLAETLLDGEYVF 141
Query: 226 NRYRSESKKPVSLKSVDIIGLGTGP-ELEKKLKYAEHVSSAVIFGRELVNSPANVLTPAV 284
+R++S+ +P +LK V ++ G E+E+ +K+A +++ + F R+L N P N+ P+
Sbjct: 142 DRFKSQKVEPRALKKVTLLADKAGQAEVERAVKHASAIATGMAFTRDLGNLPPNLCHPSF 201
Query: 285 LAEEASKVASMYSDVLSATILDIEKCKELKMGSYLGVAAASANLPHFIHLCYKPPGGSAK 344
LAE+A ++ + L +LD +K K+L MG++ V S P I L Y+ G A
Sbjct: 202 LAEQAKELGKAHK-ALKVEVLDEKKIKDLGMGAFYAVGQGSDQPPRLIVLNYQG-GKKAD 259
Query: 345 IKLALVGKGLTFDSGGYNIKTGPGCLIENMKYDMXXXXXXXXXXXXXXQIKPPGVEVHFI 404
LVGKG+TFD+GG ++K PG ++ MKYDM +++ P V + +
Sbjct: 260 KPFVLVGKGITFDTGGISLK--PGAGMDEMKYDMCGAASVFGTLRAVLELQLP-VNLVCL 316
Query: 405 VAACENMISGTGMRPGDIITAANGKTIEVNNTDAEGRLTLADALIYACNQGVDKVIDLAT 464
+A ENM SG RPGDI+T +G+T+E+ NTDAEGRL L D L YA VID+AT
Sbjct: 317 LACAENMPSGGATRPGDIVTTMSGQTVEILNTDAEGRLVLCDTLTYAERFKPQAVIDIAT 376
Query: 465 LTGACVVALGPSVAGAFTPSDDLANEVMAASQVSGEKIWRMPLEESYWEMMKSGVADMVN 524
LTGAC+VALG G +DDL +++ A + + ++ W++PL + Y E + S ADM N
Sbjct: 377 LTGACIVALGSHTTGLMGNNDDLVGQLLDAGKRADDRAWQLPLFDEYQEQLDSPFADMGN 436
Query: 525 TGGRQGGAITAALFLKQYVDEKVQWMHIDIAGPVWSE--KMRSATGFGISTMVEWVLKNS 582
GG + G ITA FL ++ + W H+DIAG W K + ATG + + +++L +
Sbjct: 437 IGGPKAGTITAGCFLSRFA-KAYNWAHMDIAGTAWISGGKDKGATGRPVPLLTQYLLDRA 495
>pdb|1GYT|A Chain A, E. Coli Aminopeptidase A (Pepa)
pdb|1GYT|B Chain B, E. Coli Aminopeptidase A (Pepa)
pdb|1GYT|C Chain C, E. Coli Aminopeptidase A (Pepa)
pdb|1GYT|D Chain D, E. Coli Aminopeptidase A (Pepa)
pdb|1GYT|E Chain E, E. Coli Aminopeptidase A (Pepa)
pdb|1GYT|F Chain F, E. Coli Aminopeptidase A (Pepa)
pdb|1GYT|G Chain G, E. Coli Aminopeptidase A (Pepa)
pdb|1GYT|H Chain H, E. Coli Aminopeptidase A (Pepa)
pdb|1GYT|I Chain I, E. Coli Aminopeptidase A (Pepa)
pdb|1GYT|J Chain J, E. Coli Aminopeptidase A (Pepa)
pdb|1GYT|K Chain K, E. Coli Aminopeptidase A (Pepa)
pdb|1GYT|L Chain L, E. Coli Aminopeptidase A (Pepa)
Length = 503
Score = 244 bits (624), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 163/476 (34%), Positives = 250/476 (52%), Gaps = 19/476 (3%)
Query: 117 ILKKLDAQLGGLLSEASSEEDFTGKAGQSTVIR-LPGIGSKRVGLIGLGQSASRAGDFRS 175
I ++LD G +S + GK GQ+ ++ +P + S+R+ LIG G+ R D R
Sbjct: 31 IAEQLDKISDGYISALLRRGELEGKPGQTLLLHHVPNVLSERILLIGCGKE--RELDERQ 88
Query: 176 LGESXXXXXXXXXXXXXXXXLA-----SSDGLSDESKLTAASAVASGTVLGTFEDNRYRS 230
+ + G ++ K+ A A T+ + +S
Sbjct: 89 YKQVIQKTINTLNDTGSMEAVCFLTELHVKGRNNYWKVRQAVETAKETLYSFDQLKTNKS 148
Query: 231 ESKKPVSLKSVDIIGLGTGPEL---EKKLKYAEHVSSAVIFGRELVNSPANVLTPAVLAE 287
E ++P L+ + + + T EL E+ +++ +++ + ++L N P N+ A LA
Sbjct: 149 EPRRP--LRKM-VFNVPTRRELTSGERAIQHGLAIAAGIKAAKDLGNMPPNICNAAYLAS 205
Query: 288 EASKVASMYSDVLSATILDIEKCKELKMGSYLGVAAASANLPHFIHLCYKPPGGSAKIKL 347
+A ++A YS + ++ ++ KEL M SYL V S N + YK +
Sbjct: 206 QARQLADSYSKNVITRVIGEQQMKELGMHSYLAVGQGSQNESLMSVIEYKGNASEDARPI 265
Query: 348 ALVGKGLTFDSGGYNIKTGPGCLIENMKYDMXXXXXXXXXXXXXXQIKPPGVEVHFIVAA 407
LVGKGLTFDSGG +IK G ++ MKYDM +++ P + V ++A
Sbjct: 266 VLVGKGLTFDSGGISIKPSEG--MDEMKYDMCGAAAVYGVMRMVAELQLP-INVIGVLAG 322
Query: 408 CENMISGTGMRPGDIITAANGKTIEVNNTDAEGRLTLADALIYACNQGVDKVIDLATLTG 467
CENM G RPGD++T +G+T+EV NTDAEGRL L D L Y + VID+ATLTG
Sbjct: 323 CENMPGGRAYRPGDVLTTMSGQTVEVLNTDAEGRLVLCDVLTYVERFEPEAVIDVATLTG 382
Query: 468 ACVVALGPSVAGAFTPSDDLANEVMAASQVSGEKIWRMPLEESYWEMMKSGVADMVNTGG 527
ACV+ALG + G + LA+E++AAS+ SG++ WR+PL + Y E ++S ADM N GG
Sbjct: 383 ACVIALGHHITGLMANHNPLAHELIAASEQSGDRAWRLPLGDEYQEQLESNFADMANIGG 442
Query: 528 RQGGAITAALFLKQYVDEKVQWMHIDIAGPVW-SEKMRSATGFGISTMVEWVLKNS 582
R GGAITA FL ++ K W H+DIAG W S K + ATG ++ + +++L +
Sbjct: 443 RPGGAITAGCFLSRFT-RKYNWAHLDIAGTAWRSGKAKGATGRPVALLAQFLLNRA 497
>pdb|2EWB|A Chain A, The Crystal Structure Of Bovine Lens Leucine
Aminopeptidase In Complex With Zofenoprilat
Length = 486
Score = 204 bits (520), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 138/351 (39%), Positives = 192/351 (54%), Gaps = 19/351 (5%)
Query: 211 ASAVASGTVLGTFEDNRYRSESKKPVSLKSVDIIGLGTGPELEKKLKYAEHVSSAVIFGR 270
A A A G VLG +E + + + K VS K G E ++ + +S R
Sbjct: 116 AQAAAEGAVLGLYEYDDLKQKRKVVVSAKL-------HGSEDQEAWQRGVLFASGQNLAR 168
Query: 271 ELVNSPANVLTP---AVLAEEASKVASMYSDVLSATILDIEKCKELKMGSYLGVAAASAN 327
L+ +PAN +TP A + EE K AS+ +DV IE E +MGS+L VA S
Sbjct: 169 RLMETPANEMTPTKFAEIVEENLKSASIKTDVFIRPKSWIE---EQEMGSFLSVAKGSEE 225
Query: 328 LPHFIHLCYKPPGGSAKIKLALVGKGLTFDSGGYNIKTGPGCLIENMKYDMXXXXXXXXX 387
P F+ + YK +++ L VGKG+TFDSGG +IK ++ M+ DM
Sbjct: 226 PPVFLEIHYKGSPNASEPPLVFVGKGITFDSGGISIKAAAN--MDLMRADMGGAATICSA 283
Query: 388 XXXXXQIKPPGVEVHFIVAACENMISGTGMRPGDIITAANGKTIEVNNTDAEGRLTLADA 447
++ P + + + CENM SG +PGD++ A NGKTI+V+NTDAEGRL LADA
Sbjct: 284 IVSAAKLDLP-INIVGLAPLCENMPSGKANKPGDVVRARNGKTIQVDNTDAEGRLILADA 342
Query: 448 LIYACNQGVDKVIDLATLTGACVVALGPSVAGAFTPSDDLANEVMAASQVSGEKIWRMPL 507
L YA +I+ ATLTGA +ALG G FT S L N++ AS +G+++WRMPL
Sbjct: 343 LCYAHTFNPKVIINAATLTGAMDIALGSGATGVFTNSSWLWNKLFEASIETGDRVWRMPL 402
Query: 508 EESY-WEMMKSGVADMVNTGG-RQGGAITAALFLKQYVDEKVQWMHIDIAG 556
E Y +++ +AD+ N G R GA TAA FLK++V +W H+DIAG
Sbjct: 403 FEHYTRQVIDCQLADVNNIGKYRSAGACTAAAFLKEFVTHP-KWAHLDIAG 452
>pdb|1LCP|A Chain A, Bovine Lens Leucine Aminopeptidase Complexed With
L-Leucine Phosphonic Acid
pdb|1LCP|B Chain B, Bovine Lens Leucine Aminopeptidase Complexed With
L-Leucine Phosphonic Acid
pdb|1LAN|A Chain A, Leucine Aminopeptidase Complex With L-Leucinal
pdb|1LAM|A Chain A, Leucine Aminopeptidase (Unligated)
Length = 484
Score = 204 bits (519), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 138/351 (39%), Positives = 192/351 (54%), Gaps = 19/351 (5%)
Query: 211 ASAVASGTVLGTFEDNRYRSESKKPVSLKSVDIIGLGTGPELEKKLKYAEHVSSAVIFGR 270
A A A G VLG +E + + + K VS K G E ++ + +S R
Sbjct: 116 AQAAAEGAVLGLYEYDDLKQKRKVVVSAKL-------HGSEDQEAWQRGVLFASGQNLAR 168
Query: 271 ELVNSPANVLTP---AVLAEEASKVASMYSDVLSATILDIEKCKELKMGSYLGVAAASAN 327
L+ +PAN +TP A + EE K AS+ +DV IE E +MGS+L VA S
Sbjct: 169 RLMETPANEMTPTKFAEIVEENLKSASIKTDVFIRPKSWIE---EQEMGSFLSVAKGSEE 225
Query: 328 LPHFIHLCYKPPGGSAKIKLALVGKGLTFDSGGYNIKTGPGCLIENMKYDMXXXXXXXXX 387
P F+ + YK +++ L VGKG+TFDSGG +IK ++ M+ DM
Sbjct: 226 PPVFLEIHYKGSPNASEPPLVFVGKGITFDSGGISIKAAAN--MDLMRADMGGAATICSA 283
Query: 388 XXXXXQIKPPGVEVHFIVAACENMISGTGMRPGDIITAANGKTIEVNNTDAEGRLTLADA 447
++ P + + + CENM SG +PGD++ A NGKTI+V+NTDAEGRL LADA
Sbjct: 284 IVSAAKLDLP-INIVGLAPLCENMPSGKANKPGDVVRARNGKTIQVDNTDAEGRLILADA 342
Query: 448 LIYACNQGVDKVIDLATLTGACVVALGPSVAGAFTPSDDLANEVMAASQVSGEKIWRMPL 507
L YA +I+ ATLTGA +ALG G FT S L N++ AS +G+++WRMPL
Sbjct: 343 LCYAHTFNPKVIINAATLTGAMDIALGSGATGVFTNSSWLWNKLFEASIETGDRVWRMPL 402
Query: 508 EESY-WEMMKSGVADMVNTGG-RQGGAITAALFLKQYVDEKVQWMHIDIAG 556
E Y +++ +AD+ N G R GA TAA FLK++V +W H+DIAG
Sbjct: 403 FEHYTRQVIDCQLADVNNIGKYRSAGACTAAAFLKEFVTHP-KWAHLDIAG 452
>pdb|2J9A|A Chain A, Bllap In Complex With Microginin Fr1
Length = 487
Score = 204 bits (519), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 138/351 (39%), Positives = 192/351 (54%), Gaps = 19/351 (5%)
Query: 211 ASAVASGTVLGTFEDNRYRSESKKPVSLKSVDIIGLGTGPELEKKLKYAEHVSSAVIFGR 270
A A A G VLG +E + + + K VS K G E ++ + +S R
Sbjct: 116 AQAAAEGAVLGLYEYDDLKQKRKVVVSAKL-------HGSEDQEAWQRGVLFASGQNLAR 168
Query: 271 ELVNSPANVLTP---AVLAEEASKVASMYSDVLSATILDIEKCKELKMGSYLGVAAASAN 327
L+ +PAN +TP A + EE K AS+ +DV IE E +MGS+L VA S
Sbjct: 169 RLMETPANEMTPTKFAEIVEENLKSASIKTDVFIRPKSWIE---EQEMGSFLSVAKGSEE 225
Query: 328 LPHFIHLCYKPPGGSAKIKLALVGKGLTFDSGGYNIKTGPGCLIENMKYDMXXXXXXXXX 387
P F+ + YK +++ L VGKG+TFDSGG +IK ++ M+ DM
Sbjct: 226 PPVFLEIHYKGSPNASEPPLVFVGKGITFDSGGISIKAAAN--MDLMRADMGGAATICSA 283
Query: 388 XXXXXQIKPPGVEVHFIVAACENMISGTGMRPGDIITAANGKTIEVNNTDAEGRLTLADA 447
++ P + + + CENM SG +PGD++ A NGKTI+V+NTDAEGRL LADA
Sbjct: 284 IVSAAKLDLP-INIVGLAPLCENMPSGKANKPGDVVRARNGKTIQVDNTDAEGRLILADA 342
Query: 448 LIYACNQGVDKVIDLATLTGACVVALGPSVAGAFTPSDDLANEVMAASQVSGEKIWRMPL 507
L YA +I+ ATLTGA +ALG G FT S L N++ AS +G+++WRMPL
Sbjct: 343 LCYAHTFNPKVIINAATLTGAMDIALGSGATGVFTNSSWLWNKLFEASIETGDRVWRMPL 402
Query: 508 EESY-WEMMKSGVADMVNTGG-RQGGAITAALFLKQYVDEKVQWMHIDIAG 556
E Y +++ +AD+ N G R GA TAA FLK++V +W H+DIAG
Sbjct: 403 FEHYTRQVIDCQLADVNNIGKYRSAGACTAAAFLKEFVTHP-KWAHLDIAG 452
>pdb|1BPM|A Chain A, Differentiation And Identification Of The Two Catalytic
Metal Binding Sites In Bovine Lens Leucine
Aminopeptidase By X-Ray Crystallography
pdb|1BPN|A Chain A, Differentiation And Identification Of The Two Catalytic
Metal Binding Sites In Bovine Lens Leucine
Aminopeptidase By X-Ray Crystallography
pdb|1LAP|A Chain A, Molecular Structure Of Leucine Aminopeptidase At
2.7-Angstroms Resolution
Length = 487
Score = 204 bits (519), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 138/351 (39%), Positives = 192/351 (54%), Gaps = 19/351 (5%)
Query: 211 ASAVASGTVLGTFEDNRYRSESKKPVSLKSVDIIGLGTGPELEKKLKYAEHVSSAVIFGR 270
A A A G VLG +E + + + K VS K G E ++ + +S R
Sbjct: 116 AQAAAEGAVLGLYEYDDLKQKRKVVVSAKL-------HGSEDQEAWQRGVLFASGQNLAR 168
Query: 271 ELVNSPANVLTP---AVLAEEASKVASMYSDVLSATILDIEKCKELKMGSYLGVAAASAN 327
L+ +PAN +TP A + EE K AS+ +DV IE E +MGS+L VA S
Sbjct: 169 RLMETPANEMTPTKFAEIVEENLKSASIKTDVFIRPKSWIE---EQEMGSFLSVAKGSEE 225
Query: 328 LPHFIHLCYKPPGGSAKIKLALVGKGLTFDSGGYNIKTGPGCLIENMKYDMXXXXXXXXX 387
P F+ + YK +++ L VGKG+TFDSGG +IK ++ M+ DM
Sbjct: 226 PPVFLEIHYKGSPNASEPPLVFVGKGITFDSGGISIKAAAN--MDLMRADMGGAATICSA 283
Query: 388 XXXXXQIKPPGVEVHFIVAACENMISGTGMRPGDIITAANGKTIEVNNTDAEGRLTLADA 447
++ P + + + CENM SG +PGD++ A NGKTI+V+NTDAEGRL LADA
Sbjct: 284 IVSAAKLDLP-INIVGLAPLCENMPSGKANKPGDVVRARNGKTIQVDNTDAEGRLILADA 342
Query: 448 LIYACNQGVDKVIDLATLTGACVVALGPSVAGAFTPSDDLANEVMAASQVSGEKIWRMPL 507
L YA +I+ ATLTGA +ALG G FT S L N++ AS +G+++WRMPL
Sbjct: 343 LCYAHTFNPKVIINAATLTGAMDIALGSGATGVFTNSSWLWNKLFEASIETGDRVWRMPL 402
Query: 508 EESY-WEMMKSGVADMVNTGG-RQGGAITAALFLKQYVDEKVQWMHIDIAG 556
E Y +++ +AD+ N G R GA TAA FLK++V +W H+DIAG
Sbjct: 403 FEHYTRQVIDCQLADVNNIGKYRSAGACTAAAFLKEFVTHP-KWAHLDIAG 452
>pdb|1BLL|E Chain E, X-Ray Crystallographic Determination Of The Structure Of
Bovine Lens Leucine Aminopeptidase Complexed With
Amastatin: Formulation Of A Catalytic Mechanism
Featuring A Gem-Diolate Transition State
Length = 488
Score = 204 bits (519), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 138/351 (39%), Positives = 192/351 (54%), Gaps = 19/351 (5%)
Query: 211 ASAVASGTVLGTFEDNRYRSESKKPVSLKSVDIIGLGTGPELEKKLKYAEHVSSAVIFGR 270
A A A G VLG +E + + + K VS K G E ++ + +S R
Sbjct: 117 AQAAAEGAVLGLYEYDDLKQKRKVVVSAKL-------HGSEDQEAWQRGVLFASGQNLAR 169
Query: 271 ELVNSPANVLTP---AVLAEEASKVASMYSDVLSATILDIEKCKELKMGSYLGVAAASAN 327
L+ +PAN +TP A + EE K AS+ +DV IE E +MGS+L VA S
Sbjct: 170 RLMETPANEMTPTKFAEIVEENLKSASIKTDVFIRPKSWIE---EQEMGSFLSVAKGSEE 226
Query: 328 LPHFIHLCYKPPGGSAKIKLALVGKGLTFDSGGYNIKTGPGCLIENMKYDMXXXXXXXXX 387
P F+ + YK +++ L VGKG+TFDSGG +IK ++ M+ DM
Sbjct: 227 PPVFLEIHYKGSPNASEPPLVFVGKGITFDSGGISIKAAAN--MDLMRADMGGAATICSA 284
Query: 388 XXXXXQIKPPGVEVHFIVAACENMISGTGMRPGDIITAANGKTIEVNNTDAEGRLTLADA 447
++ P + + + CENM SG +PGD++ A NGKTI+V+NTDAEGRL LADA
Sbjct: 285 IVSAAKLDLP-INIVGLAPLCENMPSGKANKPGDVVRARNGKTIQVDNTDAEGRLILADA 343
Query: 448 LIYACNQGVDKVIDLATLTGACVVALGPSVAGAFTPSDDLANEVMAASQVSGEKIWRMPL 507
L YA +I+ ATLTGA +ALG G FT S L N++ AS +G+++WRMPL
Sbjct: 344 LCYAHTFNPKVIINAATLTGAMDIALGSGATGVFTNSSWLWNKLFEASIETGDRVWRMPL 403
Query: 508 EESY-WEMMKSGVADMVNTGG-RQGGAITAALFLKQYVDEKVQWMHIDIAG 556
E Y +++ +AD+ N G R GA TAA FLK++V +W H+DIAG
Sbjct: 404 FEHYTRQVIDCQLADVNNIGKYRSAGACTAAAFLKEFVTHP-KWAHLDIAG 453
>pdb|3IJ3|A Chain A, 1.8 Angstrom Resolution Crystal Structure Of Cytosol
Aminopeptidase From Coxiella Burnetii
Length = 482
Score = 184 bits (467), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 121/337 (35%), Positives = 177/337 (52%), Gaps = 23/337 (6%)
Query: 220 LGTFEDNRYRSESKKPVSLKSVDIIGLGTGPELEKKLKYAEHVSSAVIFGRELVNSPANV 279
LG+++ N YR S L P+ +K + + +++ + R+L+N+PA
Sbjct: 135 LGSYQFNAYRKRSPYLAKL---------FLPQAHRK-RVTDWLTTIYLI-RDLINTPAED 183
Query: 280 LTPAVLAEEASKVASMYSDVLSATILDIE-KCKELKMGSYLGVAAASANLPHFIHLCYKP 338
+ P+ LA+ VA + A + IE K E + + V A + P I L +
Sbjct: 184 MGPSELAQAVKHVAKEFE----AKVKIIESKDLETEFPAIYAVGRAGSRPPLLIDLKW-- 237
Query: 339 PGGSAKIKLALVGKGLTFDSGGYNIKTGPGCLIENMKYDMXXXXXXXXXXXXXXQIKPPG 398
G K+ LVGKG+ FDSGG +IKT G L+ MK DM + P
Sbjct: 238 -GDIKAPKVTLVGKGVCFDSGGLDIKTPGGMLL--MKKDMGGAAHALGLARMIMLQQLP- 293
Query: 399 VEVHFIVAACENMISGTGMRPGDIITAANGKTIEVNNTDAEGRLTLADALIYACNQGVDK 458
V + ++ A EN I RPGD++ KTIE+ NTDAEGR+ LADAL A + D
Sbjct: 294 VRLRLLIPAVENAIGSRSYRPGDVVQTRARKTIEITNTDAEGRVVLADALAEAVKEDPDL 353
Query: 459 VIDLATLTGACVVALGPSVAGAFTPSDDLANEVMAASQVSGEKIWRMPLEESYWEMMKSG 518
+ID +TLTGA +ALGP++ F D LA ++ AS + + +WR+PL + Y +KS
Sbjct: 354 IIDFSTLTGAARIALGPNLPALFANQDSLAQALIDASLKTDDPLWRLPLFQPYRNYLKSE 413
Query: 519 VADMVNTG-GRQGGAITAALFLKQYVDEKVQWMHIDI 554
VAD+ N+ R GAITAALFL+ +V +++ W H DI
Sbjct: 414 VADLTNSSQNRMAGAITAALFLQHFVSDQIPWAHFDI 450
>pdb|3PEI|A Chain A, Crystal Structure Of Cytosol Aminopeptidase From
Francisella Tularensis
Length = 486
Score = 177 bits (449), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 123/360 (34%), Positives = 185/360 (51%), Gaps = 10/360 (2%)
Query: 222 TFEDNRYRSESKKPVSLKSVDIIGLGTGPELEKKLKYAEHVSSAVIFGRELVNSPANVLT 281
T+ ++ ++E K+ SL+ ++++ G ++E K ++ + ++L N PAN+ T
Sbjct: 125 TYVFDQLKTE-KENYSLEQIELVYSGD-QDIEDSAKIGSAIACGQNYAKDLQNLPANICT 182
Query: 282 PAVLAEEASKVASMYSDVLSATILDIEKCKELKMGSYLGVAAASANLPHFIHLCYKPPGG 341
EA ++ S Y+ S LD + EL G L V S + + YK G
Sbjct: 183 TDYXLNEARELTSKYA-TFSLDYLDQDAXAELGXGCALAVGRGSYXSNYTVCXEYKG-GN 240
Query: 342 SAKIKLALVGKGLTFDSGGYNIKTGPGCLIENMKYDMXXXXXXXXXXXXXXQIKPPGVEV 401
+ LVGKGL FD+GG IK G ++ K D + P V V
Sbjct: 241 EGDAPIVLVGKGLVFDNGGICIKQAAG--XDSXKXDXGGVAAVXGTXKAIAXLNLP-VNV 297
Query: 402 HFIVAACENMISGTGMRPGDIITAANGKTIEVNNTDAEGRLTLADALIYACNQGVDKVID 461
+ EN + RPGD++ + G T+EV+NTDAEGRL L D L Y VID
Sbjct: 298 VGVXGLAENAVDARSYRPGDVLKSXKGITVEVSNTDAEGRLVLCDTLTYIGKYKPKAVID 357
Query: 462 LATLTGACVVALGPSVAGAFTPSDDLANEVMAASQVSGEKIWRMPLEESYWEMMKSGVAD 521
LATLTGA +++LG + +G F SD LAN + A+ S + IWR+PL + Y + ++S VAD
Sbjct: 358 LATLTGAXIISLGDAYSGXFANSDKLANSLEQAANASNDLIWRLPLHKPYLKKIESKVAD 417
Query: 522 MVNTG-GRQGGAITAALFLKQYVDEKVQWMHIDIAGPVWSEKMR-SATGFGISTMVEWVL 579
N G R G+I AALFL ++ E +W H+DIAG + A+G + +V +++
Sbjct: 418 XDNCGRDRSAGSIVAALFLSKFT-EDYEWAHLDIAGSAXGDFASCKASGRPVPLLVHYLI 476
>pdb|3KZW|A Chain A, Crystal Structure Of Cytosol Aminopeptidase From
Staphylococcus Aureus Col
pdb|3KZW|B Chain B, Crystal Structure Of Cytosol Aminopeptidase From
Staphylococcus Aureus Col
pdb|3KZW|C Chain C, Crystal Structure Of Cytosol Aminopeptidase From
Staphylococcus Aureus Col
pdb|3KZW|D Chain D, Crystal Structure Of Cytosol Aminopeptidase From
Staphylococcus Aureus Col
pdb|3KZW|E Chain E, Crystal Structure Of Cytosol Aminopeptidase From
Staphylococcus Aureus Col
pdb|3KZW|F Chain F, Crystal Structure Of Cytosol Aminopeptidase From
Staphylococcus Aureus Col
pdb|3KZW|G Chain G, Crystal Structure Of Cytosol Aminopeptidase From
Staphylococcus Aureus Col
pdb|3KZW|H Chain H, Crystal Structure Of Cytosol Aminopeptidase From
Staphylococcus Aureus Col
pdb|3KZW|I Chain I, Crystal Structure Of Cytosol Aminopeptidase From
Staphylococcus Aureus Col
pdb|3KZW|J Chain J, Crystal Structure Of Cytosol Aminopeptidase From
Staphylococcus Aureus Col
pdb|3KZW|K Chain K, Crystal Structure Of Cytosol Aminopeptidase From
Staphylococcus Aureus Col
pdb|3KZW|L Chain L, Crystal Structure Of Cytosol Aminopeptidase From
Staphylococcus Aureus Col
Length = 515
Score = 177 bits (448), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 125/375 (33%), Positives = 187/375 (49%), Gaps = 39/375 (10%)
Query: 222 TFEDNRYRSESKKPV---------SLKSVDIIGLGTGPELEKKLKYAEHVSSAVIFGREL 272
T+E + Y+S K P SL +D I G + ++ R+
Sbjct: 159 TYEFDHYKSSKKAPFKTNLNLISESLIELDFIHEGIS------------IGQSINLARDF 206
Query: 273 VNSPANVLTPAVLAEEASKVASMYSDVLSATILDIEKCKELKMGSYLGVAAASANLPHFI 332
N P NVLTP AE+ V + + + D + G V S + P +
Sbjct: 207 SNMPPNVLTPQTFAEDI--VNHFKNTKVKVDVKDYDTLVSEGFGLLQAVGKGSKHKPRLV 264
Query: 333 HLCYKPPGGSAKIK--LALVGKGLTFDSGGYNIKTGPGCLIENMKYDMXXXXXXXXXXXX 390
+ Y G K + +ALVGKG+T+DSGGY+IKT G + MK+DM
Sbjct: 265 TITY---NGKDKDEAPIALVGKGITYDSGGYSIKTKNG--MATMKFDMCGAANVVGIIEA 319
Query: 391 XXQIKPPGVEVHFIVAACENMISGTGMRPGDIITAANGKTIEVNNTDAEGRLTLADALIY 450
+++ P V + ++A ENMI+ M+P D+ TA +G+T+EV NTDAEGRL LADA+ Y
Sbjct: 320 ASRLQLP-VNIVGVLACAENMINEASMKPDDVFTALSGETVEVMNTDAEGRLVLADAVFY 378
Query: 451 ACNQGVDKVIDLATLTGACVVALGPSVAGAF-TPSDDLANEVMAASQVSGEKIWRMPLEE 509
A ++D ATLTGA +VALG A AF + S + N+++ S E ++ +P+
Sbjct: 379 ANQYQPSVIMDFATLTGAAIVALGDDKAAAFESNSKVILNDILQISSEVDEMVFELPITA 438
Query: 510 SYWEMMK-SGVADMVNTGGRQGGAITAALFLKQYVDEKVQWMHIDIAGPVWSEKM----- 563
+ +K S +AD+VN QG A+ AA F+ + + +H DIAGP + K
Sbjct: 439 TERASIKHSDIADLVNHTNGQGKALFAASFVTHF-SGQTPHIHFDIAGPATTNKASYNGP 497
Query: 564 RSATGFGISTMVEWV 578
+ TGF I T+V+W+
Sbjct: 498 KGPTGFMIPTIVQWL 512
>pdb|2HB6|A Chain A, Structure Of Caenorhabditis Elegans Leucine Aminopeptidase
(Lap1)
pdb|2HB6|B Chain B, Structure Of Caenorhabditis Elegans Leucine Aminopeptidase
(Lap1)
pdb|2HC9|A Chain A, Structure Of Caenorhabditis Elegans Leucine
Aminopeptidase-Zinc Complex (Lap1)
Length = 491
Score = 140 bits (353), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 104/307 (33%), Positives = 157/307 (51%), Gaps = 16/307 (5%)
Query: 271 ELVNSPANVLTPAVLAEEASKVASMYSDVLSATILDIEKCKELKMGSYLGVAAASANLPH 330
L+++PAN+LT L +EA KV + + T++ E+ + G V A P
Sbjct: 175 RLIDTPANILTTDALVDEAVKVGNATGSKI--TVIRGEELLKAGFGGIYHVGKAGPTPPA 232
Query: 331 FIHLCYKPPGGSAKIKLALVGKGLTFDSGGYNIKTGPGCLIENMKYDMXXXXXXXXXXXX 390
F+ L ++ PG + I ALVGKG+ +D+GG IKT G + NMK DM
Sbjct: 233 FVVLSHEVPGSTEHI--ALVGKGVVYDTGGLQIKTKTG--MPNMKRDMGGAAGMLEAYSA 288
Query: 391 XXQIKPPGVEVHFIVAACENMISGTGMRPGDIITAANGKTIEVNNTDAEGRLTLADALIY 450
+ +H + EN +S +P DII +GKT+E+NNTDAEGRL LAD + Y
Sbjct: 289 LVK-HGFSQTLHACLCIVENNVSPIANKPDDIIKMLSGKTVEINNTDAEGRLILADGVFY 347
Query: 451 ACNQ-GVDKVIDLATLTGACVVALGPSVAGAFTPSDDLANEVMAASQVSGEKIWRMPLE- 508
A + D+ATLTGA G A T + L NE++ A + SG+ + M
Sbjct: 348 AKETLKATTIFDMATLTGAQAWLSGRLHGAAMTNDEQLENEIIKAGKASGDLVAPMLFAP 407
Query: 509 ESYWEMMKSGVADMVNTG-GRQGG--AITAALFLKQYV--DEKVQWMHIDIAGPVWSEKM 563
+ ++ +KS +ADM N+ G+ G + A L + ++ E ++W+H+DIA P +E
Sbjct: 408 DLFFGDLKSSIADMKNSNLGKMDGPPSAVAGLLIGAHIGFGEGLRWLHLDIAAP--AEVG 465
Query: 564 RSATGFG 570
TG+G
Sbjct: 466 DRGTGYG 472
>pdb|4EFD|A Chain A, Crystal Structure Of An M17 Aminopeptidase From
Trypanosoma Brucei, Tb427tmp.02.4440
pdb|4EFD|B Chain B, Crystal Structure Of An M17 Aminopeptidase From
Trypanosoma Brucei, Tb427tmp.02.4440
pdb|4EFD|C Chain C, Crystal Structure Of An M17 Aminopeptidase From
Trypanosoma Brucei, Tb427tmp.02.4440
pdb|4EFD|D Chain D, Crystal Structure Of An M17 Aminopeptidase From
Trypanosoma Brucei, Tb427tmp.02.4440
pdb|4EFD|E Chain E, Crystal Structure Of An M17 Aminopeptidase From
Trypanosoma Brucei, Tb427tmp.02.4440
pdb|4EFD|F Chain F, Crystal Structure Of An M17 Aminopeptidase From
Trypanosoma Brucei, Tb427tmp.02.4440
Length = 522
Score = 136 bits (342), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 107/331 (32%), Positives = 161/331 (48%), Gaps = 20/331 (6%)
Query: 260 EHVSSAVIFGRELVNSPANVLTPAVLAEEASKVASMYSDVLSATILDI--EKCKELKMGS 317
E V+++ + LV++P N+LT A E +A Y+ L + I + E G
Sbjct: 201 EAVATSTQLCQRLVDAPPNLLTTATFTE----IAQGYAKALGFDVDVICGDDLCERGYGG 256
Query: 318 YLGVAAASANLPHFIHLCYKPPGGSAKIKLALVGKGLTFDSGGYNIKTGPGCLIENMKYD 377
V A+ P + L Y P G K K++LVGKG+ +D GG +K P ++ MK+D
Sbjct: 257 IYSVGKAAFEAPRLVTLLYTPKGTPVK-KVSLVGKGIVYDCGGLALK--PADYMKLMKHD 313
Query: 378 MXXXXXXXXXXXXXXQIKPPGVEVHFIVAACENMISGTGMRPGDIITAANGKTIEVNNTD 437
M +++ P V++ + EN I R DII +GKT+EV NTD
Sbjct: 314 MGGAAAVFCGFLTAVRLQQP-VQLSCTLCLAENAIGPKSYRNDDIIVMKSGKTVEVINTD 372
Query: 438 AEGRLTLADALIYACNQ---GVDKVIDLATLTGACVVALGPSVAGAFTPSDDLANEVMAA 494
AEGR+ L D + +A N+ D VID+ATLTGA +A G AG + + ++ A
Sbjct: 373 AEGRIVLGDGVFHATNELSFTPDVVIDMATLTGAQGIATGRHHAGLYVNEEGAEAAMLRA 432
Query: 495 SQVSGEKIWRMPLEESYWE-MMKSGVADMVNTGGRQ--GGAITAALFLKQYVDEKVQ--W 549
+ SGE + + Y E KS ADM N R+ G A F+ ++ K
Sbjct: 433 GRESGETCFPVLYCPEYHEPEFKSNHADMTNLMERRDNAGVSCAGYFITTHLSPKFTGAH 492
Query: 550 MHIDIAGPVWSEKMRSATGFGISTMVEWVLK 580
+H+D+A PV++ ATGFG + + E+ K
Sbjct: 493 IHVDLAYPVFNSN--GATGFGPALLTEYFRK 521
>pdb|3UW0|A Chain A, Pectin Methylesterase From Yersinia Enterocolitica
Length = 364
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 472 ALGPSVAGAFTPSDDLAN-EVMAASQVSGEKIWRMPLEESYWEMMKSGVADMVNTGGRQ 529
A+G SV T D + + M+ GEKIW P + ++E G +N G RQ
Sbjct: 285 AIGQSVFINTTMDDHIYGWDKMSGKDKQGEKIWFYPQDSRFFEANSQGPGAAINEGRRQ 343
>pdb|2GRK|A Chain A, Crystal Structure Of Ectromelia Virus Evm1 Chemokine
Binding Protein
pdb|2GRK|B Chain B, Crystal Structure Of Ectromelia Virus Evm1 Chemokine
Binding Protein
Length = 228
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 277 ANVLTPAVLAEEASKVASMYSDVLSATILDIEKCKELKMGSYLG 320
+N+ T VL S Y D++ +TI+DI+ K+L+ +G
Sbjct: 139 SNIKTHPVLGSNISHKKVRYEDIIGSTIVDIKCVKDLEFSVRIG 182
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,722,640
Number of Sequences: 62578
Number of extensions: 633581
Number of successful extensions: 1508
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1439
Number of HSP's gapped (non-prelim): 23
length of query: 583
length of database: 14,973,337
effective HSP length: 104
effective length of query: 479
effective length of database: 8,465,225
effective search space: 4054842775
effective search space used: 4054842775
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)