Query 007947
Match_columns 583
No_of_seqs 214 out of 1581
Neff 5.6
Searched_HMMs 46136
Date Thu Mar 28 17:27:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007947.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007947hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK00913 multifunctional amino 100.0 1E-142 3E-147 1160.3 54.9 474 80-579 2-482 (483)
2 COG0260 PepB Leucyl aminopepti 100.0 4E-142 8E-147 1152.2 48.1 451 117-582 28-484 (485)
3 cd00433 Peptidase_M17 Cytosol 100.0 1E-138 2E-143 1130.9 51.5 461 94-578 2-468 (468)
4 PTZ00412 leucyl aminopeptidase 100.0 1E-137 3E-142 1117.7 48.8 436 131-581 65-537 (569)
5 PF00883 Peptidase_M17: Cytoso 100.0 4E-123 8E-128 956.6 30.5 306 266-576 1-311 (311)
6 PRK05015 aminopeptidase B; Pro 100.0 9E-120 2E-124 957.1 40.5 386 159-580 27-423 (424)
7 KOG2597 Predicted aminopeptida 100.0 2E-118 4E-123 959.1 32.3 490 61-583 3-512 (513)
8 PF02789 Peptidase_M17_N: Cyto 99.8 1.2E-17 2.5E-22 150.9 14.4 124 97-232 1-126 (126)
9 PRK13009 succinyl-diaminopimel 79.5 29 0.00064 36.8 12.9 118 264-410 3-134 (375)
10 PRK00431 RNase III inhibitor; 76.5 75 0.0016 30.6 15.9 110 79-197 3-121 (177)
11 PRK06915 acetylornithine deace 73.5 36 0.00078 37.0 11.8 42 263-306 17-58 (422)
12 COG3480 SdrC Predicted secrete 72.5 3.3 7.1E-05 44.1 3.2 141 379-561 109-267 (342)
13 cd00986 PDZ_LON_protease PDZ d 72.3 3.7 8.1E-05 33.9 3.0 26 407-432 15-40 (79)
14 PRK04443 acetyl-lysine deacety 71.8 57 0.0012 34.5 12.5 117 263-409 6-122 (348)
15 PRK13004 peptidase; Reviewed 71.5 58 0.0013 35.2 12.7 111 264-405 16-140 (399)
16 cd02903 Macro_BAL_like Macro d 71.0 88 0.0019 28.9 14.0 109 80-196 2-113 (137)
17 PRK06837 acetylornithine deace 70.8 95 0.0021 33.9 14.3 43 263-307 20-62 (427)
18 PRK06133 glutamate carboxypept 70.4 1E+02 0.0023 33.5 14.5 128 263-410 37-171 (410)
19 PF13180 PDZ_2: PDZ domain; PD 69.1 1.8 3.8E-05 36.2 0.4 46 407-462 21-67 (82)
20 cd00991 PDZ_archaeal_metallopr 68.8 8.1 0.00018 32.1 4.3 26 407-432 17-43 (79)
21 PRK09104 hypothetical protein; 68.7 61 0.0013 35.8 12.4 42 263-306 17-64 (464)
22 TIGR01910 DapE-ArgE acetylorni 67.9 34 0.00073 36.5 9.9 38 267-306 2-42 (375)
23 PRK13983 diaminopimelate amino 66.8 38 0.00083 36.1 10.1 42 264-307 6-53 (400)
24 PRK07473 carboxypeptidase; Pro 66.3 87 0.0019 33.7 12.7 126 263-410 11-147 (376)
25 PRK07522 acetylornithine deace 65.1 66 0.0014 34.3 11.4 127 263-410 4-137 (385)
26 cd02908 Macro_Appr_pase_like M 63.2 1.4E+02 0.0031 28.4 15.6 107 83-198 4-115 (165)
27 PRK08652 acetylornithine deace 63.1 76 0.0017 33.1 11.3 118 264-410 3-120 (347)
28 PRK08588 succinyl-diaminopimel 62.5 1.2E+02 0.0025 32.3 12.8 41 264-306 3-43 (377)
29 PRK07906 hypothetical protein; 62.3 49 0.0011 36.0 10.0 118 266-410 2-140 (426)
30 PRK07907 hypothetical protein; 61.7 1E+02 0.0022 34.0 12.4 127 262-410 17-156 (449)
31 PRK08596 acetylornithine deace 61.6 1E+02 0.0023 33.5 12.4 121 263-410 13-153 (421)
32 TIGR01902 dapE-lys-deAc N-acet 58.1 1.3E+02 0.0028 31.6 12.0 33 268-302 2-34 (336)
33 PLN02280 IAA-amino acid hydrol 57.9 1.6E+02 0.0034 33.3 13.2 127 259-410 93-221 (478)
34 COG1921 SelA Selenocysteine sy 56.0 44 0.00095 36.9 8.1 109 381-496 93-248 (395)
35 PRK07318 dipeptidase PepV; Rev 55.3 2E+02 0.0042 32.0 13.3 116 263-410 14-153 (466)
36 cd02905 Macro_GDAP2_like Macro 53.8 1.9E+02 0.0042 27.1 11.5 106 83-197 5-116 (140)
37 cd00990 PDZ_glycyl_aminopeptid 53.3 9.1 0.0002 31.3 1.9 26 407-432 19-45 (80)
38 cd03330 Macro_2 Macro domain, 52.4 1.8E+02 0.004 26.4 11.8 104 83-195 4-110 (133)
39 PRK00466 acetyl-lysine deacety 52.3 2.2E+02 0.0048 30.0 12.7 41 264-306 11-51 (346)
40 TIGR01880 Ac-peptdase-euk N-ac 51.6 2.5E+02 0.0055 30.1 13.2 128 264-410 10-147 (400)
41 cd00989 PDZ_metalloprotease PD 51.5 7.7 0.00017 31.5 1.2 25 408-432 20-45 (79)
42 TIGR03526 selenium_YgeY putati 49.9 3.2E+02 0.0069 29.4 13.6 117 263-410 13-143 (395)
43 TIGR01892 AcOrn-deacetyl acety 49.8 1E+02 0.0022 32.4 9.7 37 268-306 2-39 (364)
44 cd00136 PDZ PDZ domain, also c 47.7 13 0.00027 29.5 1.8 26 407-432 20-46 (70)
45 PF09926 DUF2158: Uncharacteri 47.4 19 0.00041 28.6 2.7 33 417-451 1-38 (53)
46 PF10447 EXOSC1: Exosome compo 46.9 9.2 0.0002 33.0 0.9 13 414-426 66-78 (82)
47 PRK09133 hypothetical protein; 46.2 90 0.0019 34.6 8.9 120 264-410 38-176 (472)
48 PRK08554 peptidase; Reviewed 45.7 3E+02 0.0065 30.5 12.8 123 265-410 3-136 (438)
49 cd00992 PDZ_signaling PDZ doma 43.7 20 0.00044 29.1 2.5 31 399-432 28-59 (82)
50 cd00987 PDZ_serine_protease PD 42.8 16 0.00034 30.3 1.8 31 399-432 26-57 (90)
51 PRK10199 alkaline phosphatase 42.8 1.7E+02 0.0038 31.8 10.0 32 377-409 143-175 (346)
52 PRK13007 succinyl-diaminopimel 42.7 2.9E+02 0.0064 28.9 11.7 40 263-303 7-46 (352)
53 PRK13013 succinyl-diaminopimel 42.4 2E+02 0.0044 31.1 10.8 42 263-306 14-58 (427)
54 cd00988 PDZ_CTP_protease PDZ d 40.5 24 0.00053 29.0 2.6 27 406-432 19-46 (85)
55 smart00506 A1pp Appr-1"-p proc 40.3 2.7E+02 0.0058 24.7 11.8 104 83-194 4-114 (133)
56 PRK08651 succinyl-diaminopimel 38.4 5.2E+02 0.011 27.5 13.1 42 263-306 6-50 (394)
57 TIGR01891 amidohydrolases amid 38.1 2.9E+02 0.0062 29.4 10.9 36 267-304 3-38 (363)
58 PF06675 DUF1177: Protein of u 37.1 1E+02 0.0023 32.1 6.8 152 329-508 12-178 (276)
59 KOG1402 Ornithine aminotransfe 36.6 1.2E+02 0.0026 33.1 7.5 99 272-395 216-328 (427)
60 KOG0884 Similar to cyclophilin 36.5 17 0.00038 33.8 1.1 56 497-560 61-119 (161)
61 smart00228 PDZ Domain present 36.3 25 0.00054 28.5 2.0 31 399-432 28-59 (85)
62 PLN02693 IAA-amino acid hydrol 35.8 6.5E+02 0.014 27.9 14.4 123 263-410 47-171 (437)
63 PRK06446 hypothetical protein; 35.3 4.6E+02 0.0099 28.8 12.2 41 264-306 3-46 (436)
64 cd02907 Macro_Af1521_BAL_like 34.3 4.2E+02 0.0092 25.3 16.0 109 80-197 3-121 (175)
65 PF11330 DUF3132: Protein of u 34.2 50 0.0011 29.1 3.5 43 408-450 67-109 (124)
66 TIGR02038 protease_degS peripl 33.6 25 0.00055 37.8 2.0 28 405-432 283-311 (351)
67 TIGR01246 dapE_proteo succinyl 32.5 6.2E+02 0.013 26.7 12.6 39 266-306 2-40 (370)
68 PRK12893 allantoate amidohydro 32.1 6.5E+02 0.014 27.1 12.6 32 379-410 98-130 (412)
69 PRK05111 acetylornithine deace 32.1 3.6E+02 0.0078 28.6 10.5 40 265-306 7-53 (383)
70 TIGR01883 PepT-like peptidase 30.5 5.6E+02 0.012 26.9 11.6 62 267-331 4-65 (361)
71 cd05707 S1_Rrp5_repeat_sc11 S1 30.1 50 0.0011 26.3 2.7 39 400-444 23-67 (68)
72 KOG3857 Alcohol dehydrogenase, 30.0 38 0.00082 37.0 2.5 40 286-327 87-140 (465)
73 PRK15026 aminoacyl-histidine d 29.8 7E+02 0.015 28.2 12.7 39 265-305 12-50 (485)
74 PRK08262 hypothetical protein; 28.4 4.4E+02 0.0095 29.3 10.7 34 378-412 156-191 (486)
75 PRK07338 hypothetical protein; 28.3 5.2E+02 0.011 27.7 11.0 41 264-306 18-61 (402)
76 cd05687 S1_RPS1_repeat_ec1_hs1 28.1 43 0.00093 26.8 2.0 38 401-444 24-67 (70)
77 PRK07079 hypothetical protein; 27.4 7.7E+02 0.017 27.3 12.4 42 264-307 18-66 (469)
78 PF14685 Tricorn_PDZ: Tricorn 26.7 38 0.00081 29.6 1.5 19 414-432 37-55 (88)
79 PF13275 S4_2: S4 domain; PDB: 26.4 50 0.0011 27.3 2.1 20 414-434 46-65 (65)
80 TIGR03320 ygeY M20/DapE family 26.1 7.4E+02 0.016 26.6 11.7 38 263-302 13-50 (395)
81 cd04454 S1_Rrp4_like S1_Rrp4_l 23.9 96 0.0021 25.7 3.5 25 415-445 49-73 (82)
82 PF13973 DUF4222: Domain of un 23.8 72 0.0016 25.3 2.5 26 417-443 3-28 (53)
83 TIGR01886 dipeptidase dipeptid 23.7 9.5E+02 0.021 26.7 12.3 42 263-306 13-66 (466)
84 cd02749 Macro Macro domain, a 22.1 5.9E+02 0.013 23.0 11.1 103 84-194 5-117 (147)
85 TIGR01713 typeII_sec_gspC gene 21.7 47 0.001 34.5 1.4 18 415-432 207-224 (259)
86 KOG1349 Gpi-anchor transamidas 21.2 1.7E+02 0.0038 30.7 5.2 53 380-434 45-104 (309)
87 PRK07205 hypothetical protein; 20.4 1.1E+03 0.025 25.7 12.4 117 263-410 11-151 (444)
88 COG4942 Membrane-bound metallo 20.2 86 0.0019 35.0 3.0 79 391-488 296-374 (420)
89 PF01488 Shikimate_DH: Shikima 20.1 4E+02 0.0086 24.4 7.1 47 153-218 10-56 (135)
No 1
>PRK00913 multifunctional aminopeptidase A; Provisional
Probab=100.00 E-value=1.3e-142 Score=1160.33 Aligned_cols=474 Identities=44% Similarity=0.682 Sum_probs=430.8
Q ss_pred EEEeecCCcccccccEEEEEEecCCCCCCCCcccchhHHHHHHHHhhHHHHHHHhcCCCCCCCCcEEEEecC-CCCccEE
Q 007947 80 SFAAKEVDVVEWKGDILAVGVTEKDMGKDDNSKFQNSILKKLDAQLGGLLSEASSEEDFTGKAGQSTVIRLP-GIGSKRV 158 (583)
Q Consensus 80 ~~~~~~~~~~~~~~D~LVVgV~e~~~~~~~~s~~~~~~~~~ld~~l~g~Ls~~~~~~~f~Gk~Ge~~~l~~~-~~~~~rv 158 (583)
.|+.+...+..++.|++|||++ .. ..+....+|+.+++.++++++..+|+||.||++.++.+ +...+++
T Consensus 2 ~~~~~~~~~~~~~~~~~vv~~~-~~---------~~~~~~~ld~~~~g~l~~~~~~~~f~gk~ge~~~l~~~~g~~~~~v 71 (483)
T PRK00913 2 EFSVKSGSPEKQKSDCLVVGVP-ER---------LSPAAEQLDKASDGYLSALLKRGDFKGKAGETLLLHAVPGVLAERV 71 (483)
T ss_pred eEEEeccCcccccCCEEEEEec-cc---------cchhHHHHhhhhhHHHHHHHHhCCCCCCCCCEEEEecCCCCccceE
Confidence 3444555556678899999998 21 24456788999999999999999999999999988754 4678999
Q ss_pred EEEecCCCC-CChHHHHHHHHHHHHHHHHcccCcEEEEecCCCCCCchhHHHHHHHHHHHHHhccccCccccCCCCCCCC
Q 007947 159 GLIGLGQSA-SRAGDFRSLGESVAAAAKAAQASNVAVVLASSDGLSDESKLTAASAVASGTVLGTFEDNRYRSESKKPVS 237 (583)
Q Consensus 159 llVGLGk~~-~~~~~~r~~~~a~a~~~k~~~~~~v~i~l~~~~~~~~~~~~~~~~a~aeG~~lg~Y~f~~yKs~~~~~~~ 237 (583)
++||||+.+ ++.+.+|++++++++.+++.+.+++.+.++.+. ....+++++||+.|+.|+|++||+++++...
T Consensus 72 i~vGlG~~~~~~~~~~r~a~a~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~eg~~l~~y~f~~~k~~~~~~~~ 145 (483)
T PRK00913 72 LLVGLGKEEELDEEQLRKAAGKAARALKKTKVKEAVIFLTELH------TYWKARAAAEGALLGLYRFDKYKSKKEPRRP 145 (483)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHhhhcCceEEEEecCccC------cHHHHHHHHHHHHHcCccccccCCCCcccCC
Confidence 999999865 788999999999999998888877777665432 2346889999999999999999997543324
Q ss_pred ccEEEEEcCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhhhcCCceEEEEeCHHHHHHcCCCc
Q 007947 238 LKSVDIIGLGTGPELEKKLKYAEHVSSAVIFGRELVNSPANVLTPAVLAEEASKVASMYSDVLSATILDIEKCKELKMGS 317 (583)
Q Consensus 238 l~~v~~~~~~~~~~~~~~~~~~~~~a~~~~~aRdL~n~P~N~ltP~~~A~~a~~~~~~~~~~~~v~V~d~~~l~~~gmg~ 317 (583)
+.++.++......+.++.+++++++++++++||||+|+|||+|||++||+++++++++++ ++|+|+|++||+++|||+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~aRdL~n~P~n~~tP~~~a~~a~~~~~~~g--~~v~V~~~~~l~~~gmg~ 223 (483)
T PRK00913 146 LEKLVFLVPTRLTEAEKAIAHGEAIAEGVNLARDLVNEPPNILTPAYLAERAKELAKEYG--LEVEVLDEKEMEKLGMGA 223 (483)
T ss_pred ccEEEEEcCCcchHHHHHHHHHHHHHHHHHHHHHhhCCChhhcCHHHHHHHHHHHHHhcC--CEEEEEeHHHHHhCCCCc
Confidence 667777642112456788999999999999999999999999999999999999999884 999999999999999999
Q ss_pred hhhhcccCCCCCeEEEEEEcCCCCCCCceEEEEecceeecCCCCCCCCCCcccccccccccchHHHHHHHHHHHHhcCCC
Q 007947 318 YLGVAAASANLPHFIHLCYKPPGGSAKIKLALVGKGLTFDSGGYNIKTGPGCLIENMKYDMGGAAAVLGAAKAIGQIKPP 397 (583)
Q Consensus 318 llaV~~GS~~pPrli~l~Y~g~~~~~~~~i~LVGKGiTFDsGG~slKp~~~~~M~~MK~DM~GAAaVlga~~aia~lklp 397 (583)
||+|||||.+|||||+|+|+|+ + ++|+|||||||||||||||||+. +|++||+||+|||+|+|+|+||++||+|
T Consensus 224 ~laVg~GS~~~prli~l~Y~g~-~---~~i~LVGKGITFDsGG~slKp~~--~M~~MK~DM~GAAaVlga~~aia~lkl~ 297 (483)
T PRK00913 224 LLAVGQGSANPPRLIVLEYKGG-K---KPIALVGKGLTFDSGGISLKPAA--GMDEMKYDMGGAAAVLGTMRALAELKLP 297 (483)
T ss_pred EEEEeccCCCCCeEEEEEECCC-C---CeEEEEcCceEecCCCccCCCCc--ChhhcccccHhHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999983 3 79999999999999999999998 8999999999999999999999999999
Q ss_pred ceEEEEEEeecccCCCCCCCCCCcEEEccCCcEEEeecCCccCceehhhhhhHHHhcCCCeEEEecchhHHHHHhhCCCe
Q 007947 398 GVEVHFIVAACENMISGTGMRPGDIITAANGKTIEVNNTDAEGRLTLADALIYACNQGVDKVIDLATLTGACVVALGPSV 477 (583)
Q Consensus 398 ~vnV~~ii~~~ENm~sg~A~rPGDVvts~~GkTVEV~NTDAEGRLvLADaL~Ya~~~~p~~iIDiATLTGA~~vALG~~~ 477 (583)
|||++++|+|||||||+|||||||||+||||||||.||||||||||||+|+||++++|+.|||+|||||||++|||+++
T Consensus 298 -vnV~~v~~l~ENm~~~~A~rPgDVi~~~~GkTVEV~NTDAEGRLvLADal~ya~~~~p~~iiDiATLTGa~~vALG~~~ 376 (483)
T PRK00913 298 -VNVVGVVAACENMPSGNAYRPGDVLTSMSGKTIEVLNTDAEGRLVLADALTYAERFKPDAIIDVATLTGACVVALGHHT 376 (483)
T ss_pred -ceEEEEEEeeccCCCCCCCCCCCEEEECCCcEEEeecCCcccceeehhHHHHhhhcCCCEEEEecchHHHHHHHcCCCc
Confidence 9999999999999999999999999999999999999999999999999999988999999999999999999999999
Q ss_pred EEEeeCCHHHHHHHHHHHHHhCCceeeCCCChhHHhhccCcccccccCCCCCCchhHHHHHHhhccCCCCCeEEeeeccc
Q 007947 478 AGAFTPSDDLANEVMAASQVSGEKIWRMPLEESYWEMMKSGVADMVNTGGRQGGAITAALFLKQYVDEKVQWMHIDIAGP 557 (583)
Q Consensus 478 agvfsn~~~l~~~l~~ag~~~gE~~WrlPl~~~y~~~lkS~vADl~N~g~~~~gaitAA~FL~~Fv~~~~~WaHlDIAG~ 557 (583)
+|+|+|||+|++++++||+++||++|||||+++|+++|||++|||+|+|+|+||+||||+||+||| +++||+|||||||
T Consensus 377 ag~~sn~~~l~~~~~~a~~~~gE~~WrlPl~~~y~~~l~S~vADl~N~~~~~~ga~~AA~FL~~Fv-~~~~WaHlDIAG~ 455 (483)
T PRK00913 377 AGLMSNNDELADELLKAGEESGERAWRLPLGDEYQEQLKSPFADMANIGGRPGGAITAACFLSRFV-EKYPWAHLDIAGT 455 (483)
T ss_pred EEEEeCCHHHHHHHHHHHHHHCCceeecCCCHHHHhHCCCchhhhcCCCCCCccccHHHHHHHHhC-CCCCEEEEECCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999 5799999999999
Q ss_pred CCCCC-----CCCcccchHHHHHHHHH
Q 007947 558 VWSEK-----MRSATGFGISTMVEWVL 579 (583)
Q Consensus 558 a~~~~-----~kgaTG~gVrtL~~~l~ 579 (583)
+|.++ ++|+||||||||+||++
T Consensus 456 a~~~~~~~~~~~g~tG~gvrtL~~~l~ 482 (483)
T PRK00913 456 AWNSKAWGYNPKGATGRGVRLLVQFLE 482 (483)
T ss_pred cccCCCCCCCCCCceeHHHHHHHHHHh
Confidence 99763 48999999999999997
No 2
>COG0260 PepB Leucyl aminopeptidase [Amino acid transport and metabolism]
Probab=100.00 E-value=3.7e-142 Score=1152.15 Aligned_cols=451 Identities=45% Similarity=0.692 Sum_probs=414.6
Q ss_pred HHHHHHHHhhHHHHHHHhcCCCCCCCCcEEEEecCCCCccEEEEEecCCCCCChHHHHHHHHHHHHHHHHcccCcEEEEe
Q 007947 117 ILKKLDAQLGGLLSEASSEEDFTGKAGQSTVIRLPGIGSKRVGLIGLGQSASRAGDFRSLGESVAAAAKAAQASNVAVVL 196 (583)
Q Consensus 117 ~~~~ld~~l~g~Ls~~~~~~~f~Gk~Ge~~~l~~~~~~~~rvllVGLGk~~~~~~~~r~~~~a~a~~~k~~~~~~v~i~l 196 (583)
....+|....+.++.+.+..+|+||.|+++.++.+....+|+++||||+.+++.+++|++.+.+++.+++.+..++.+.+
T Consensus 28 ~~~~~d~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~vglg~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 107 (485)
T COG0260 28 EAIALDEKSEGILSWLLKAGEFSGKAGQVLLLPGSVGSVKRVLLVGLGKRKLSEDTLRRAAGAAARALKKGKAWEVTLLL 107 (485)
T ss_pred hhhhcccchhhhHHHHHHhhcccccCCceEEeeccCCccceEEEEeecCCcCCHHHHHHHHHHHHHHhhcCCceEEEEec
Confidence 34556666667788888889999999999888765323689999999998778899999999999999988888888877
Q ss_pred cCCCCCCchhHHHHHHHHHHHHHhccccCccccCCCCCC-CCccEEEEEcCCCchHHHHHHHHHHHHHHHHHHHHHhhcC
Q 007947 197 ASSDGLSDESKLTAASAVASGTVLGTFEDNRYRSESKKP-VSLKSVDIIGLGTGPELEKKLKYAEHVSSAVIFGRELVNS 275 (583)
Q Consensus 197 ~~~~~~~~~~~~~~~~a~aeG~~lg~Y~f~~yKs~~~~~-~~l~~v~~~~~~~~~~~~~~~~~~~~~a~~~~~aRdL~n~ 275 (583)
++.. ..+.++.+++|+.++.|+|++||++++++ .++..+.+... .+..+.++++++++++|+++||||+|+
T Consensus 108 ~~~~------~~~~~~~~~~g~~~~~Y~f~~yk~~k~~~~~~~~~v~~~~~--~~~~~~~~~~~~ai~~~v~~aRdLvN~ 179 (485)
T COG0260 108 PELP------AAEIAAAAVEGFLLGSYRFDRYKSEKKEPDKELPKVTLLVP--AKSAEKAIREGEAIAEGVNLARDLVNT 179 (485)
T ss_pred cccc------hHHHHHHHHHHHHhcccchhhccccccccccccceEEEecc--chhhHHHHHHHHHHHHHHHHHHHHhhC
Confidence 7543 34678899999999999999999987554 23566777653 225667899999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHhhhcCCceEEEEeCHHHHHHcCCCchhhhcccCCCCCeEEEEEEcCCCCCCCceEEEEeccee
Q 007947 276 PANVLTPAVLAEEASKVASMYSDVLSATILDIEKCKELKMGSYLGVAAASANLPHFIHLCYKPPGGSAKIKLALVGKGLT 355 (583)
Q Consensus 276 P~N~ltP~~~A~~a~~~~~~~~~~~~v~V~d~~~l~~~gmg~llaV~~GS~~pPrli~l~Y~g~~~~~~~~i~LVGKGiT 355 (583)
|||+|||++||++++.+++.++ ++|+|+|+++|+++|||+||+|||||.+|||||+|+|+|. ++++++|+|||||||
T Consensus 180 P~n~l~P~~la~~a~~la~~~~--v~veVl~~~~l~~~gmg~llaVg~GS~~~Prlivl~y~g~-~~~~~~iaLVGKGit 256 (485)
T COG0260 180 PANILTPEELAERAELLAKLGG--VKVEVLDEKDLEKLGMGALLAVGKGSARPPRLIVLEYNGK-GKAKKPIALVGKGIT 256 (485)
T ss_pred CcccCCHHHHHHHHHHHhhcCC--ceEEEecHHHHHHcCCceeeeeccCCCCCCeEEEEEcCCC-CCCCceEEEEcCcee
Confidence 9999999999999888888775 9999999999999999999999999999999999999994 456789999999999
Q ss_pred ecCCCCCCCCCCcccccccccccchHHHHHHHHHHHHhcCCCceEEEEEEeecccCCCCCCCCCCcEEEccCCcEEEeec
Q 007947 356 FDSGGYNIKTGPGCLIENMKYDMGGAAAVLGAAKAIGQIKPPGVEVHFIVAACENMISGTGMRPGDIITAANGKTIEVNN 435 (583)
Q Consensus 356 FDsGG~slKp~~~~~M~~MK~DM~GAAaVlga~~aia~lklp~vnV~~ii~~~ENm~sg~A~rPGDVvts~~GkTVEV~N 435 (583)
||||||||||+. +|++||+||||||+|+|+|.++++||+| +||++++|+|||||||+|||||||||+||||||||.|
T Consensus 257 FDsGGisiKp~~--~M~~MK~DMgGAAaV~g~~~a~a~l~l~-vnv~~vl~~~ENm~~g~A~rPGDVits~~GkTVEV~N 333 (485)
T COG0260 257 FDSGGISIKPAA--GMDTMKYDMGGAAAVLGAMRALAELKLP-VNVVGVLPAVENMPSGNAYRPGDVITSMNGKTVEVLN 333 (485)
T ss_pred ecCCCcccCCcc--chhhhhcccchHHHHHHHHHHHHHcCCC-ceEEEEEeeeccCCCCCCCCCCCeEEecCCcEEEEcc
Confidence 999999999998 8999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred CCccCceehhhhhhHHHhcCCCeEEEecchhHHHHHhhCCCeEEEeeCCHHHHHHHHHHHHHhCCceeeCCCChhHHhhc
Q 007947 436 TDAEGRLTLADALIYACNQGVDKVIDLATLTGACVVALGPSVAGAFTPSDDLANEVMAASQVSGEKIWRMPLEESYWEMM 515 (583)
Q Consensus 436 TDAEGRLvLADaL~Ya~~~~p~~iIDiATLTGA~~vALG~~~agvfsn~~~l~~~l~~ag~~~gE~~WrlPl~~~y~~~l 515 (583)
|||||||||||+|+||+++||+.|||+|||||||+||||++++|+|||||+|+++|.+||+++||++|||||+++|+++|
T Consensus 334 TDAEGRLVLADaLtYA~~~kp~~iID~ATLTGA~~vALG~~~~g~fs~dd~La~~l~~As~~~gE~~WrLPl~~~y~~~l 413 (485)
T COG0260 334 TDAEGRLVLADALTYAEELKPDLIIDVATLTGAAVVALGNDYTGLFSNDDELANQLLAASEETGEPLWRLPLHEEYRKQL 413 (485)
T ss_pred cCccHHHHHHHHHHHHHHcCCCEEEEehhhHhHHHHHhCCCccccccCCHHHHHHHHHHHHHcCCccccCCCCHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccccccCCC-CCCchhHHHHHHhhccCCCCCeEEeeecccCCCCC----CCCcccchHHHHHHHHHhcc
Q 007947 516 KSGVADMVNTGG-RQGGAITAALFLKQYVDEKVQWMHIDIAGPVWSEK----MRSATGFGISTMVEWVLKNS 582 (583)
Q Consensus 516 kS~vADl~N~g~-~~~gaitAA~FL~~Fv~~~~~WaHlDIAG~a~~~~----~kgaTG~gVrtL~~~l~~~~ 582 (583)
+|+||||+|+|+ |+|||||||+||+|||+ ++||+|||||||||.++ ++|+||+|||||++|+++++
T Consensus 414 ~S~~ADl~N~~~~~~gGaitAA~FL~~Fv~-~~~WaHlDIAGta~~~~~~~~~~GAtG~~VrtL~~~l~~~~ 484 (485)
T COG0260 414 KSNFADLANIGGGRFGGAITAALFLSEFVE-NVPWAHLDIAGTAWKSGSPYWPKGATGVGVRTLAQFLLNRA 484 (485)
T ss_pred CCcchhhhcCCCCCCCcHHHHHHHHHHHcC-CCCeEEEEeccccccCCCCcCCCCCeeccHHHHHHHHHHhc
Confidence 999999999998 89999999999999996 59999999999999876 68999999999999999874
No 3
>cd00433 Peptidase_M17 Cytosol aminopeptidase family, N-terminal and catalytic domains. Family M17 contains zinc- and manganese-dependent exopeptidases ( EC 3.4.11.1), including leucine aminopeptidase. They catalyze removal of amino acids from the N-terminus of a protein and play a key role in protein degradation and in the metabolism of biologically active peptides. They do not contain HEXXH motif (which is used as one of the signature patterns to group the peptidase families) in the metal-binding site. The two associated zinc ions and the active site are entirely enclosed within the C-terminal catalytic domain in leucine aminopeptidase. The enzyme is a hexamer, with the catalytic domains clustered around the three-fold axis, and the two trimers related to one another by a two-fold rotation. The N-terminal domain is structurally similar to the ADP-ribose binding Macro domain. This family includes proteins from bacteria, archaea, animals and plants.
Probab=100.00 E-value=1.1e-138 Score=1130.88 Aligned_cols=461 Identities=46% Similarity=0.711 Sum_probs=417.3
Q ss_pred cEEEEEEecCCCCCCCCcccchhHHHHHHHHhhHHHHHHHhcCCCCCCCCcEEEEecCCCCccEEEEEecCCCC-CChHH
Q 007947 94 DILAVGVTEKDMGKDDNSKFQNSILKKLDAQLGGLLSEASSEEDFTGKAGQSTVIRLPGIGSKRVGLIGLGQSA-SRAGD 172 (583)
Q Consensus 94 D~LVVgV~e~~~~~~~~s~~~~~~~~~ld~~l~g~Ls~~~~~~~f~Gk~Ge~~~l~~~~~~~~rvllVGLGk~~-~~~~~ 172 (583)
|.++++++++. ..+......+|+...+.++++++..+|+|+.|+.+.++.+..+.+++++||||+.. .+.+.
T Consensus 2 ~~lv~~~~~~~-------~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~g~~~~l~~~~~~~~~~~~vglg~~~~~~~~~ 74 (468)
T cd00433 2 DGLVLGVFEGE-------GGLPPAAEKLDAASSGALAALLKASGFKGKAGETLLLPALGGGAKRVALVGLGKEEDLDVEN 74 (468)
T ss_pred cEEEEEEecCc-------cccChHHHhcChhhhHHHHHHHHhcCCCCCCCcEEEEccCCCCccEEEEEEeCCchhcCHHH
Confidence 68899998752 12345567788888889999999999999999998887654467899999999875 78899
Q ss_pred HHHHHHHHHHHHHHcccCcEEEEecCCCCCCchhHHHHHHHHHHHHHhccccCccccCCCCCCCCccEEEEEcCCCchHH
Q 007947 173 FRSLGESVAAAAKAAQASNVAVVLASSDGLSDESKLTAASAVASGTVLGTFEDNRYRSESKKPVSLKSVDIIGLGTGPEL 252 (583)
Q Consensus 173 ~r~~~~a~a~~~k~~~~~~v~i~l~~~~~~~~~~~~~~~~a~aeG~~lg~Y~f~~yKs~~~~~~~l~~v~~~~~~~~~~~ 252 (583)
+|++++.+++.+++.+..++.+..+.. .+..+.+++|+.++.|+|++||+++++. ++ .+.++. ......
T Consensus 75 ~r~a~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~g~~l~~y~~~~~k~~~~~~-~~-~~~~~~-~~~~~~ 143 (468)
T cd00433 75 LRKAAGAAARALKKLGSKSVAVDLPTL--------AEDAEAAAEGALLGAYRFDRYKSKKKKT-PL-LVVLEL-GNDKAA 143 (468)
T ss_pred HHHHHHHHHHHhhhcCceEEEEecCcc--------hHHHHHHHHHHHHhccccccccCCccCC-Cc-eeEEec-ccchhh
Confidence 999999999999887766666544321 2467899999999999999999876544 33 223322 123445
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhhhcCCceEEEEeCHHHHHHcCCCchhhhcccCCCCCeEE
Q 007947 253 EKKLKYAEHVSSAVIFGRELVNSPANVLTPAVLAEEASKVASMYSDVLSATILDIEKCKELKMGSYLGVAAASANLPHFI 332 (583)
Q Consensus 253 ~~~~~~~~~~a~~~~~aRdL~n~P~N~ltP~~~A~~a~~~~~~~~~~~~v~V~d~~~l~~~gmg~llaV~~GS~~pPrli 332 (583)
+..+++++++++++++||||+|+|||+|||++||+++++++++++ ++|+|+|++||+++|||+||+|||||.+|||||
T Consensus 144 ~~~~~~~~~~a~~~~~aRdL~n~P~n~~tP~~~a~~a~~l~~~~g--~~v~V~~~~~l~~~gmg~~laVg~GS~~~p~lv 221 (468)
T cd00433 144 EAALERGEAIAEGVNLARDLVNTPANDLTPTYLAEEAKELAKELG--VKVEVLDEKELEELGMGALLAVGKGSEEPPRLI 221 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHHhcC--CEEEEEcHHHHHhCCCCceeeecccCCCCCEEE
Confidence 678999999999999999999999999999999999999999885 999999999999999999999999999999999
Q ss_pred EEEEcCCCCCCCceEEEEecceeecCCCCCCCCCCcccccccccccchHHHHHHHHHHHHhcCCCceEEEEEEeecccCC
Q 007947 333 HLCYKPPGGSAKIKLALVGKGLTFDSGGYNIKTGPGCLIENMKYDMGGAAAVLGAAKAIGQIKPPGVEVHFIVAACENMI 412 (583)
Q Consensus 333 ~l~Y~g~~~~~~~~i~LVGKGiTFDsGG~slKp~~~~~M~~MK~DM~GAAaVlga~~aia~lklp~vnV~~ii~~~ENm~ 412 (583)
+|+|+|+ ++.+++|+|||||||||||||||||+. +|++||+||+|||+|+|+|+|+++||+| |||++++|+|||||
T Consensus 222 ~l~Y~g~-~~~~~~i~LVGKGiTFDsGG~slKp~~--~M~~Mk~DM~GAAaVlga~~aia~l~~~-vnV~~i~~~~EN~i 297 (468)
T cd00433 222 VLEYKGK-GASKKPIALVGKGITFDTGGLSLKPAA--GMDGMKYDMGGAAAVLGAMKAIAELKLP-VNVVGVLPLAENMI 297 (468)
T ss_pred EEEECCC-CCCCCcEEEEcCceEecCCCccccCcc--ChhhccccchhHHHHHHHHHHHHHcCCC-ceEEEEEEeeecCC
Confidence 9999994 456789999999999999999999998 8999999999999999999999999999 99999999999999
Q ss_pred CCCCCCCCcEEEccCCcEEEeecCCccCceehhhhhhHHHhcCCCeEEEecchhHHHHHhhCCCeEEEeeCCHHHHHHHH
Q 007947 413 SGTGMRPGDIITAANGKTIEVNNTDAEGRLTLADALIYACNQGVDKVIDLATLTGACVVALGPSVAGAFTPSDDLANEVM 492 (583)
Q Consensus 413 sg~A~rPGDVvts~~GkTVEV~NTDAEGRLvLADaL~Ya~~~~p~~iIDiATLTGA~~vALG~~~agvfsn~~~l~~~l~ 492 (583)
||+|||||||||++|||||||.||||||||||||+|+||++++|+.|||+|||||||++|||++++|+|+|||+|+++|+
T Consensus 298 s~~A~rPgDVi~s~~GkTVEI~NTDAEGRLVLaDal~ya~~~~p~~iIDiATLTGA~~vALG~~~ag~~sn~d~l~~~l~ 377 (468)
T cd00433 298 SGNAYRPGDVITSRSGKTVEILNTDAEGRLVLADALTYAQEFKPDLIIDIATLTGAAVVALGHDYAGLFTNDDELAKQLL 377 (468)
T ss_pred CCCCCCCCCEeEeCCCcEEEEecCCcccceeehhHHHHHhhcCCCEEEEecchHHHHHHHcCCCceEEecCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCceeeCCCChhHHhhccCcccccccCCCC-CCchhHHHHHHhhccCCCCCeEEeeecccCCCCC----CCCcc
Q 007947 493 AASQVSGEKIWRMPLEESYWEMMKSGVADMVNTGGR-QGGAITAALFLKQYVDEKVQWMHIDIAGPVWSEK----MRSAT 567 (583)
Q Consensus 493 ~ag~~~gE~~WrlPl~~~y~~~lkS~vADl~N~g~~-~~gaitAA~FL~~Fv~~~~~WaHlDIAG~a~~~~----~kgaT 567 (583)
+||+.+||++||||||++|+++|||++|||+|+|++ +||+||||+||+|||++++||+|||||||+|.++ ++|+|
T Consensus 378 ~Ag~~~gE~~WrlPl~~~y~~~lks~vADl~N~~~~~~~g~~tAA~FL~~Fv~~~~~WaHlDIAG~a~~~~~~~~~~g~T 457 (468)
T cd00433 378 AAGEASGERVWRLPLWEEYREQLKSDIADLKNIGGRGPAGSITAALFLKEFVGDGIPWAHLDIAGTAWKSKPGYLPKGAT 457 (468)
T ss_pred HHHHHhCCcEeecCCCHHHHHHcCCCchhhhCCCCCCCCcccHHHHHHHHHhCCCCCeEEEECCCcCcCCCCccCCCCce
Confidence 999999999999999999999999999999999986 9999999999999997559999999999999875 48999
Q ss_pred cchHHHHHHHH
Q 007947 568 GFGISTMVEWV 578 (583)
Q Consensus 568 G~gVrtL~~~l 578 (583)
|||||||+|||
T Consensus 458 G~gvr~L~~~l 468 (468)
T cd00433 458 GFGVRLLVEFL 468 (468)
T ss_pred eHHHHHHHHhC
Confidence 99999999996
No 4
>PTZ00412 leucyl aminopeptidase; Provisional
Probab=100.00 E-value=1.2e-137 Score=1117.71 Aligned_cols=436 Identities=32% Similarity=0.454 Sum_probs=392.0
Q ss_pred HHHhcCCCCCCCCcEEEEecCCCCccEEEEEecCCCCCChHHHHHHHHHHHHHHHHcccCcEEE-EecCCCC-C-----C
Q 007947 131 EASSEEDFTGKAGQSTVIRLPGIGSKRVGLIGLGQSASRAGDFRSLGESVAAAAKAAQASNVAV-VLASSDG-L-----S 203 (583)
Q Consensus 131 ~~~~~~~f~Gk~Ge~~~l~~~~~~~~rvllVGLGk~~~~~~~~r~~~~a~a~~~k~~~~~~v~i-~l~~~~~-~-----~ 203 (583)
+++...+|+++.|++.+. +.+|+++||||+.. +.+.+|.+++.+++.+++.+.+++.+ .++.... . .
T Consensus 65 ~~~~~~gf~~~~~~~~~~-----~~~rvllvGlG~~~-t~~~~R~a~a~aar~l~~~~~~~i~~~~l~~~~~~~~~~~~~ 138 (569)
T PTZ00412 65 SAPIPFGFRKAAGNRRLD-----EERRELFAGMGAKP-TVRDYRLAVTAAVREAKKLNASALVLHSLPQDVFSMGDLFQP 138 (569)
T ss_pred cccccccccCCCcceeec-----CCceEEEEecCCCC-CHHHHHHHHHHHHHHHHhcCCeEEEEEecccccccccccccc
Confidence 445568999999986543 34899999999976 78899999999999999999998887 5553210 0 0
Q ss_pred --chhHHHHHHHHHHHHHhccccCccccCCCCCC---------------CCccEEEEEcCCCchHHHHHHHHHHHHHHHH
Q 007947 204 --DESKLTAASAVASGTVLGTFEDNRYRSESKKP---------------VSLKSVDIIGLGTGPELEKKLKYAEHVSSAV 266 (583)
Q Consensus 204 --~~~~~~~~~a~aeG~~lg~Y~f~~yKs~~~~~---------------~~l~~v~~~~~~~~~~~~~~~~~~~~~a~~~ 266 (583)
.....+.+++++||+.|+.|+|++||+++++. ..+.++.++.. .+.++++++++++++++
T Consensus 139 ~~~~~~~~~~~~~aeGa~lg~Y~f~~yKs~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~---~~~~~~~~~g~~ia~~v 215 (569)
T PTZ00412 139 PSRLPSHDVVEKTAIFAVTAAYQYDRLKSGAKGGLTRARRAESRAKPPAAPQPPMELVID---SSNAQAIAAGNIIGHCV 215 (569)
T ss_pred ccccchHHHHHHHHHHHHhcceechhccCCccccccccccccccccccccCcceEEEecC---chHHHHHHHHHHHHHHH
Confidence 00123468999999999999999999875431 13456665432 34567899999999999
Q ss_pred HHHHHhhcCCCCCCChHHHHHHHHHHhhhcCCceEEE-EeCHHHHHHcCCCchhhhcccCCCCCeEEEEEEcCCCCCCCc
Q 007947 267 IFGRELVNSPANVLTPAVLAEEASKVASMYSDVLSAT-ILDIEKCKELKMGSYLGVAAASANLPHFIHLCYKPPGGSAKI 345 (583)
Q Consensus 267 ~~aRdL~n~P~N~ltP~~~A~~a~~~~~~~~~~~~v~-V~d~~~l~~~gmg~llaV~~GS~~pPrli~l~Y~g~~~~~~~ 345 (583)
|+||||+|+|+|+|||++||+++++++++++ ++|+ |+|++||+++|||+||+|||||.+|||||+|+|+| +++.++
T Consensus 216 n~ARdLvn~P~N~ltP~~~Ae~a~~~~~~~g--~~v~~Vl~~~~l~~~gmg~llaVgkGS~~pPrli~L~Y~g-~~~~~~ 292 (569)
T PTZ00412 216 NEARNLGNLREDEGVPQFYAEWIKKELAPLG--IKVRKVLRGEQLEGAGLNLMYNVGKGSRHEPYLVVFEYIG-NPRSSA 292 (569)
T ss_pred HHHHHhccCChhhcCHHHHHHHHHHHHhhcC--CEEEEEEcHHHHHHCCCcceeeeeccCCCCCEEEEEEeCC-CCCCCC
Confidence 9999999999999999999999999777664 9996 99999999999999999999999999999999999 445678
Q ss_pred eEEEEecceeecCCCCCCCCCCcccccccccccchHHHHHHHHHHHHhcCCCceEEEEEEeecccCCCCCCCCCCcEEEc
Q 007947 346 KLALVGKGLTFDSGGYNIKTGPGCLIENMKYDMGGAAAVLGAAKAIGQIKPPGVEVHFIVAACENMISGTGMRPGDIITA 425 (583)
Q Consensus 346 ~i~LVGKGiTFDsGG~slKp~~~~~M~~MK~DM~GAAaVlga~~aia~lklp~vnV~~ii~~~ENm~sg~A~rPGDVvts 425 (583)
+|+|||||||||||||||||+. +|++||+||+|||+|+|+|+|+++|++| |||+++||+|||||||+|||||||||+
T Consensus 293 ~iaLVGKGITFDSGGisLKP~~--~M~~MK~DMgGAAaVlga~~AiA~Lklp-vnVv~iiplaENm~sg~A~rPGDVits 369 (569)
T PTZ00412 293 ATALVGKGVTFDCGGLNIKPYG--SMETMHSDMMGAATVMCTLKAIAKLQLP-VNVVAAVGLAENAIGPESYHPSSIITS 369 (569)
T ss_pred cEEEEcCceEEcCCCCCCCCcc--ChhhhhccchhHHHHHHHHHHHHHcCCC-eEEEEEEEhhhcCCCCCCCCCCCEeEe
Confidence 9999999999999999999998 8999999999999999999999999999 999999999999999999999999999
Q ss_pred cCCcEEEeecCCccCceehhhhhhHHHhc-----CCCeEEEecchhHHHHHhhCCCeEEEeeCCHHHHHHHHHHHHHhCC
Q 007947 426 ANGKTIEVNNTDAEGRLTLADALIYACNQ-----GVDKVIDLATLTGACVVALGPSVAGAFTPSDDLANEVMAASQVSGE 500 (583)
Q Consensus 426 ~~GkTVEV~NTDAEGRLvLADaL~Ya~~~-----~p~~iIDiATLTGA~~vALG~~~agvfsn~~~l~~~l~~ag~~~gE 500 (583)
||||||||.||||||||||||+|+||+++ +|+.|||+|||||||++|||++++|+|+|||+|+++|++||+++||
T Consensus 370 ~nGkTVEV~NTDAEGRLVLADaL~YA~~~~~~~~~P~~iIDiATLTGA~vvALG~~~aGvfsN~d~l~~~l~~Ag~~sGE 449 (569)
T PTZ00412 370 RKGLTVEVLNTDAEGRLVLADTLTYVQKDAKLDKKPTTIIDIATLTGAIIVGLGSRRAGLFSNDAHLAQSLMASGRSSGE 449 (569)
T ss_pred cCCCEEeecccCchhhhhhHHHHHHHHhhhccccCCcEEEEecccHHHHHHHhCCCceEEecCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999984 8999999999999999999999999999999999999999999999
Q ss_pred ceeeCCCChhHHhhccCcccccccCC-CCCCchhHHHHHHhhccCCCCCeEEeeecccCCCC-C-----CCCcccchHHH
Q 007947 501 KIWRMPLEESYWEMMKSGVADMVNTG-GRQGGAITAALFLKQYVDEKVQWMHIDIAGPVWSE-K-----MRSATGFGIST 573 (583)
Q Consensus 501 ~~WrlPl~~~y~~~lkS~vADl~N~g-~~~~gaitAA~FL~~Fv~~~~~WaHlDIAG~a~~~-~-----~kgaTG~gVrt 573 (583)
++||||||++|+++|||++|||+|++ +|+||+||||+||++||++++||+|||||||+|.. + ++|+|||||||
T Consensus 450 ~~WrLPL~~ey~~~lkS~vADi~N~~~gr~aGaitAA~FL~~Fv~~~~~WaHLDIAGta~~~~~~~~~~~~GaTG~gVrt 529 (569)
T PTZ00412 450 ELWPMPIGDEHKDAMKGGIADLINVASGREAGSCTAAAFLSNFVEPEVKWAHLDIAGVGMGGDKPKGFQPAGAPGFGVQL 529 (569)
T ss_pred ceeeCCCCHHHHHHcCCCchhhcCCCCCCCCcccHHHHHHHHhcCCCCCeEEEEcCCccccCCCCCcCCCCCCccHHHHH
Confidence 99999999999999999999999997 79999999999999999767999999999999974 3 36999999999
Q ss_pred HHHHHHhc
Q 007947 574 MVEWVLKN 581 (583)
Q Consensus 574 L~~~l~~~ 581 (583)
|+||+++.
T Consensus 530 L~e~l~~~ 537 (569)
T PTZ00412 530 LVDYFRHN 537 (569)
T ss_pred HHHHHHhh
Confidence 99999875
No 5
>PF00883 Peptidase_M17: Cytosol aminopeptidase family, catalytic domain; InterPro: IPR000819 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M17 (leucyl aminopeptidase family, clan MF), the type example being leucyl aminopeptidase from Bos taurus (Bovine). Aminopeptidases are exopeptidases involved in the processing and regular turnover of intracellular proteins, although their precise role in cellular metabolism is unclear [, ]. Leucine aminopeptidases cleave leucine residues from the N-terminal of polypeptide chains, but substantial rates are evident for all amino acids []. The enzymes exist as homo-hexamers, comprising 2 trimers stacked on top of one another []. Each monomer binds 2 zinc ions and folds into 2 alpha/beta-type quasi-spherical globular domains, producing a comma-like shape []. The N-terminal 150 residues form a 5-stranded beta-sheet with 4 parallel and 1 anti-parallel strand sandwiched between 4 alpha-helices []. An alpha-helix extends into the C-terminal domain, which comprises a central 8-stranded saddle-shaped beta-sheet sandwiched between groups of helices, forming the monomer hydrophobic core []. A 3-stranded beta-sheet resides on the surface of the monomer, where it interacts with other members of the hexamer []. The 2 zinc ions and the active site are entirely located in the C-terminal catalytic domain [].; GO: 0004177 aminopeptidase activity, 0006508 proteolysis, 0005622 intracellular; PDB: 3KZW_L 3KQX_C 3KQZ_L 3KR4_I 3KR5_J 3T8W_C 3H8F_D 3H8G_A 3H8E_B 3IJ3_A ....
Probab=100.00 E-value=3.7e-123 Score=956.64 Aligned_cols=306 Identities=53% Similarity=0.879 Sum_probs=275.0
Q ss_pred HHHHHHhhcCCCCCCChHHHHHHHHHHhhhcCCceEEEEeCHHHHHHcCCCchhhhcccCCCCCeEEEEEEcCCCCCCCc
Q 007947 266 VIFGRELVNSPANVLTPAVLAEEASKVASMYSDVLSATILDIEKCKELKMGSYLGVAAASANLPHFIHLCYKPPGGSAKI 345 (583)
Q Consensus 266 ~~~aRdL~n~P~N~ltP~~~A~~a~~~~~~~~~~~~v~V~d~~~l~~~gmg~llaV~~GS~~pPrli~l~Y~g~~~~~~~ 345 (583)
||+||||+|+|||+|||+.||+++++++++++ ++|+|+|++||+++|||+||+|+|||.+|||||+|+|+|++.+.++
T Consensus 1 vn~aRdL~n~P~n~~~P~~~a~~~~~~~~~~~--v~v~v~~~~~l~~~gmg~llaVg~gS~~~P~lv~l~Y~g~~~~~~~ 78 (311)
T PF00883_consen 1 VNLARDLVNTPPNILTPETFAEYAKELAKKYG--VKVEVLDEKELEKLGMGGLLAVGRGSRHPPRLVVLEYKGNGGKSKK 78 (311)
T ss_dssp HHHHHHHHHS-TTTSSHHHHHHHHHHHHHHCT--EEEEEEEHHHHHHTT-HHHHHHHTTSSS--EEEEEEEETSTSTTSE
T ss_pred ChHHHhhhCCChhhcCHHHHHHHHHHHHhhcC--CEEEEEeHHHHHHcCCccEeeecccCCCCCEEEEEEECCCCCCCCc
Confidence 69999999999999999999999999999997 9999999999999999999999999999999999999995436789
Q ss_pred eEEEEecceeecCCCCCCCCCCcccccccccccchHHHHHHHHHHHHhcCCCceEEEEEEeecccCCCCCCCCCCcEEEc
Q 007947 346 KLALVGKGLTFDSGGYNIKTGPGCLIENMKYDMGGAAAVLGAAKAIGQIKPPGVEVHFIVAACENMISGTGMRPGDIITA 425 (583)
Q Consensus 346 ~i~LVGKGiTFDsGG~slKp~~~~~M~~MK~DM~GAAaVlga~~aia~lklp~vnV~~ii~~~ENm~sg~A~rPGDVvts 425 (583)
+|+|||||||||||||||||+. +|++||+||+|||+|+|+|+++++||+| +||+++||+|||||||+|||||||||+
T Consensus 79 ~i~LVGKGiTFDtGG~~lKp~~--~M~~Mk~DM~GAAaV~ga~~aia~lk~~-vnV~~~l~~~EN~i~~~a~~pgDVi~s 155 (311)
T PF00883_consen 79 PIALVGKGITFDTGGLSLKPSG--GMEGMKYDMGGAAAVLGAMRAIAKLKLP-VNVVAVLPLAENMISGNAYRPGDVITS 155 (311)
T ss_dssp EEEEEEEEEEEEE-TTSSSCST--TGGGGGGGGHHHHHHHHHHHHHHHCT-S-SEEEEEEEEEEE--STTSTTTTEEEE-
T ss_pred cEEEEcceEEEecCCccCCCCc--chhhcccCcchHHHHHHHHHHHHHcCCC-ceEEEEEEcccccCCCCCCCCCCEEEe
Confidence 9999999999999999999998 8999999999999999999999999999 999999999999999999999999999
Q ss_pred cCCcEEEeecCCccCceehhhhhhHHHhcCCCeEEEecchhHHHHHhhCCCeEEEeeCCHHHHHHHHHHHHHhCCceeeC
Q 007947 426 ANGKTIEVNNTDAEGRLTLADALIYACNQGVDKVIDLATLTGACVVALGPSVAGAFTPSDDLANEVMAASQVSGEKIWRM 505 (583)
Q Consensus 426 ~~GkTVEV~NTDAEGRLvLADaL~Ya~~~~p~~iIDiATLTGA~~vALG~~~agvfsn~~~l~~~l~~ag~~~gE~~Wrl 505 (583)
+|||||||.||||||||||||+|+||++++|+.|||+|||||||++|||++++|+|+||++|+++|++||+++||++|||
T Consensus 156 ~~GkTVEI~NTDAEGRLvLADaL~ya~~~~p~~iiDiATLTGa~~~ALG~~~ag~~sn~~~l~~~l~~ag~~~gE~~Wrl 235 (311)
T PF00883_consen 156 MNGKTVEIGNTDAEGRLVLADALTYAQEYKPDLIIDIATLTGACVVALGSDYAGVFSNDDELAKQLQEAGERSGERVWRL 235 (311)
T ss_dssp TTS-EEEES-TTGHHHHHHHHHHHHHHGGT-SEEEEEEE--HHHHHHHTTTSEEEEESSHHHHHHHHHHHHHHT--EEEE
T ss_pred CCCCEEEEEeeCcccceeehhHHHHHHhhCCceEEeehhhhhHHHeeECCceeeeecCCHHHHHHHHHHHHhcCCceecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHhhccCcccccccCCCCC-CchhHHHHHHhhccCCC-CCeEEeeecccCCCCC---CCCcccchHHHHHH
Q 007947 506 PLEESYWEMMKSGVADMVNTGGRQ-GGAITAALFLKQYVDEK-VQWMHIDIAGPVWSEK---MRSATGFGISTMVE 576 (583)
Q Consensus 506 Pl~~~y~~~lkS~vADl~N~g~~~-~gaitAA~FL~~Fv~~~-~~WaHlDIAG~a~~~~---~kgaTG~gVrtL~~ 576 (583)
|||++|+++|||++|||+|+|++. +|+|+||+||++||+++ +||+|||||||+|.++ ++|+||||||||+|
T Consensus 236 Pl~~~y~~~lks~~ADl~N~~~~~~~g~~~AA~FL~~Fv~~~~~~w~HlDIAg~a~~~~~~~~~gaTG~gvr~L~e 311 (311)
T PF00883_consen 236 PLWEEYREQLKSDIADLKNSGGRRGAGAITAAAFLKEFVEDGDVPWAHLDIAGTAWSDKDGPPKGATGFGVRTLVE 311 (311)
T ss_dssp ---HHHGGGGC-SSSSEESSSSSSTTHHHHHHHHHHTTCTTCTSEEEEEEETTTSEETSTTTTSEE-STTHHHHHH
T ss_pred cccHHHHHhcccccchhhccCCCCCCCccHHHHHHHHhCCCCCCceEEEEecCccccCCCCCCCCeeccchHhhcC
Confidence 999999999999999999999755 59999999999999643 9999999999999765 47999999999997
No 6
>PRK05015 aminopeptidase B; Provisional
Probab=100.00 E-value=8.7e-120 Score=957.11 Aligned_cols=386 Identities=35% Similarity=0.498 Sum_probs=332.2
Q ss_pred EEEecCCCCCChHHHHHHHHHHHHHHHHcccCcEEEEecCCCCCCchhHHHHHHHHHHHHHhccccCccccCCCCCCCCc
Q 007947 159 GLIGLGQSASRAGDFRSLGESVAAAAKAAQASNVAVVLASSDGLSDESKLTAASAVASGTVLGTFEDNRYRSESKKPVSL 238 (583)
Q Consensus 159 llVGLGk~~~~~~~~r~~~~a~a~~~k~~~~~~v~i~l~~~~~~~~~~~~~~~~a~aeG~~lg~Y~f~~yKs~~~~~~~l 238 (583)
..|.|... +.++. ...++|.++..+++++.+.=. .+..+..-++.+ -|++.|...
T Consensus 27 ~~ih~~~~----~~~~~-iq~a~r~~~~qg~~~~~l~g~-------~w~~~~~waf~q----------g~~~~k~~~--- 81 (424)
T PRK05015 27 ATIHLNGK----DDLGL-IQRAARKLDGQGIKHVALAGE-------GWDLERCWAFWQ----------GFRTPKGTR--- 81 (424)
T ss_pred eEEEcCCC----chHHH-HHHHHHHhhcCCcceEEEccC-------CCCHHHhHHHHh----------ccccCCCCc---
Confidence 44555433 23443 345678888889888866322 122122122211 355554432
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhhhcC-CceEEEEeCHHHHHHcCCCc
Q 007947 239 KSVDIIGLGTGPELEKKLKYAEHVSSAVIFGRELVNSPANVLTPAVLAEEASKVASMYS-DVLSATILDIEKCKELKMGS 317 (583)
Q Consensus 239 ~~v~~~~~~~~~~~~~~~~~~~~~a~~~~~aRdL~n~P~N~ltP~~~A~~a~~~~~~~~-~~~~v~V~d~~~l~~~gmg~ 317 (583)
+|..-.. + ++..++..+.++++++||||+|+|+|+|||+.||++|++++++++ ++++|+|+++++|+++||++
T Consensus 82 -~~~~~~l---~--~~~~~~l~~~~~~~~~aRdLvn~P~n~ltP~~lA~~a~~~~~~~~~~~v~v~Vl~~~~L~~~gmgg 155 (424)
T PRK05015 82 -KVEWPDL---D--DAQQQELDARLKIIDWVRDTINAPAEELGPEQLAQRAADLICSVAGDAVSYRIIKGEDLREQGYMG 155 (424)
T ss_pred -eEEcCCC---C--HHHHHHHHHHHHHHHHHHHHhcCCcccCCHHHHHHHHHHHHHhhccCceEEEEeeHHHHHHCCCCc
Confidence 3433221 1 233567888999999999999999999999999999999988763 35999999999999999999
Q ss_pred hhhhcccCCCCCeEEEEEEcCCCCCCCceE--EEEecceeecCCCCCCCCCCcccccccccccchHHHHHHHHHHHHhcC
Q 007947 318 YLGVAAASANLPHFIHLCYKPPGGSAKIKL--ALVGKGLTFDSGGYNIKTGPGCLIENMKYDMGGAAAVLGAAKAIGQIK 395 (583)
Q Consensus 318 llaV~~GS~~pPrli~l~Y~g~~~~~~~~i--~LVGKGiTFDsGG~slKp~~~~~M~~MK~DM~GAAaVlga~~aia~lk 395 (583)
||+|||||.+|||||+|+|+|. ++.++++ +|||||||||||||||||+. +|+.||+||+|||+|+|+|.++++++
T Consensus 156 ilaVgrGS~~pP~lv~L~Y~~~-g~~~~~v~~aLVGKGITFDSGG~sLKps~--~M~~MK~DMgGAAaV~ga~~~a~~~~ 232 (424)
T PRK05015 156 IHTVGRGSERPPVLLALDYNPT-GDPDAPVYACLVGKGITFDSGGYSIKPSA--GMDSMKSDMGGAATVTGALALAITRG 232 (424)
T ss_pred eeeeeccCCCCCEEEEEEecCC-CCCCCCeeEEEecCceEecCCCccCCCCc--CHHHhhcchhHHHHHHHHHHHHHhcC
Confidence 9999999999999999999984 3434555 99999999999999999998 89999999999999999999999999
Q ss_pred CCceEEEEEEeecccCCCCCCCCCCcEEEccCCcEEEeecCCccCceehhhhhhHHHhcCCCeEEEecchhHHHHHhhCC
Q 007947 396 PPGVEVHFIVAACENMISGTGMRPGDIITAANGKTIEVNNTDAEGRLTLADALIYACNQGVDKVIDLATLTGACVVALGP 475 (583)
Q Consensus 396 lp~vnV~~ii~~~ENm~sg~A~rPGDVvts~~GkTVEV~NTDAEGRLvLADaL~Ya~~~~p~~iIDiATLTGA~~vALG~ 475 (583)
+| +||++++|+|||||||+|||||||||++|||||||.||||||||||||+|+||++++|+.|||+|||||||++|||+
T Consensus 233 l~-~nV~~il~~aENmisg~A~kpgDVIt~~nGkTVEI~NTDAEGRLVLAD~L~yA~~~~p~~IID~ATLTGA~~~ALG~ 311 (424)
T PRK05015 233 LN-KRVKLFLCCAENLISGNAFKLGDIITYRNGKTVEVMNTDAEGRLVLADGLIDASEQGPPLIIDAATLTGAAKTALGN 311 (424)
T ss_pred CC-ceEEEEEEecccCCCCCCCCCCCEEEecCCcEEeeeccCccceeeehhHHHHhhhcCCCEEEEeeccchhhHhhhCC
Confidence 99 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEeeCCHHHHHHHHHHHHHhCCceeeCCCChhHHhhccCcccccccCC--CCCCchhHHHHHHhhccCCCC-CeEEe
Q 007947 476 SVAGAFTPSDDLANEVMAASQVSGEKIWRMPLEESYWEMMKSGVADMVNTG--GRQGGAITAALFLKQYVDEKV-QWMHI 552 (583)
Q Consensus 476 ~~agvfsn~~~l~~~l~~ag~~~gE~~WrlPl~~~y~~~lkS~vADl~N~g--~~~~gaitAA~FL~~Fv~~~~-~WaHl 552 (583)
+++|+|||||+|++++++|++.+||++|||||+++|+++++|++|||+|++ ++.||+||||+||++||++.. ||+||
T Consensus 312 ~~agvfsndd~l~~~l~~a~~~~gE~~WrLPl~~~~~~~l~S~~ADl~N~~~~~~~aGa~tAA~FL~~Fv~~~~~~W~Hl 391 (424)
T PRK05015 312 DYHALFSFDDELAQRLLASAAQENEPFWRLPLAEFHRSQLPSNFADLANSGSGAGPAGASTAAGFLSHFVENYQQGWLHI 391 (424)
T ss_pred CceeeecCCHHHHHHHHHHHHHhCCceeecCCCHHHHHhcCCCcchhcCCCCCCCCCCchHHHHHHHHHcCCCCCceEEE
Confidence 999999999999999999999999999999999999999999999999997 378999999999999996544 49999
Q ss_pred eecccCCCCC-----CCCcccchHHHHHHHHHh
Q 007947 553 DIAGPVWSEK-----MRSATGFGISTMVEWVLK 580 (583)
Q Consensus 553 DIAG~a~~~~-----~kgaTG~gVrtL~~~l~~ 580 (583)
||||| |..+ ++|+||||||||++||++
T Consensus 392 DiAgt-~~~~~~~~~~~GaTG~gVrtL~~~l~~ 423 (424)
T PRK05015 392 DCSAT-YRKSAVDQWAAGATGLGVRTIANLLLA 423 (424)
T ss_pred EccCc-ccCCCCCCCCCCcccHHHHHHHHHHhh
Confidence 99999 4333 379999999999999976
No 7
>KOG2597 consensus Predicted aminopeptidase of the M17 family [General function prediction only]
Probab=100.00 E-value=1.8e-118 Score=959.07 Aligned_cols=490 Identities=40% Similarity=0.582 Sum_probs=423.5
Q ss_pred hhhhhcccCCCCCCCCeeeEEEeecCCcccccccEEEEEEecCCCCCCCCcccchhHHHHHHHHhhHHHHHHHhcCCCCC
Q 007947 61 IARATLGLTKPAQIDPLKISFAAKEVDVVEWKGDILAVGVTEKDMGKDDNSKFQNSILKKLDAQLGGLLSEASSEEDFTG 140 (583)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~LVVgV~e~~~~~~~~s~~~~~~~~~ld~~l~g~Ls~~~~~~~f~G 140 (583)
++..++.+|++... .....++..|+|||++++++... ++.+.++..+.+|+.+.+.+..+++..++++
T Consensus 3 ~~~~~~~~~~~~~~----------~~~~~~~~~~~lvVG~~~~~~~~--~~~~~~~~~~~~d~~~~g~~~~~~~~~~~~~ 70 (513)
T KOG2597|consen 3 MSLQTLLFNQIRLA----------EICADEAKADGLVVGVYSKEGDK--KSKKKTPAGEKFDDKLGGKLIELIRESGVDG 70 (513)
T ss_pred cccccccccchhhh----------hhccccccCceEEEEEechhccc--cccccccchhhcccccccchheeeeccCCCC
Confidence 45567777777661 12233567899999999976432 3455677788899999999999999999999
Q ss_pred CCCcEEEEecCCCCccEEEEEecCCCCCChH----------HHHHHHHHHHHHHHHcccCcEEEEecCCCCCCchhHHHH
Q 007947 141 KAGQSTVIRLPGIGSKRVGLIGLGQSASRAG----------DFRSLGESVAAAAKAAQASNVAVVLASSDGLSDESKLTA 210 (583)
Q Consensus 141 k~Ge~~~l~~~~~~~~rvllVGLGk~~~~~~----------~~r~~~~a~a~~~k~~~~~~v~i~l~~~~~~~~~~~~~~ 210 (583)
+.|+..++...+.++.++.++|+|++...+. ..|......++++.......+.+. .....
T Consensus 71 ~~g~~~~~~~~~~~~~~~a~vg~gk~~~~~~~~~~~~e~~~~v~~a~~~~~~al~~~~~~~~~v~----------s~~~~ 140 (513)
T KOG2597|consen 71 KLGYGRVLELVDPEYDVVAVVGLGKEGAGPNAKEGLDEGMEFVRVAARFGARALVLALGRLVPVY----------SPMDY 140 (513)
T ss_pred CcceeeEEEecCCCcceeehhhhhhhhcCcchhhhccchhhhhhhhcccchHHHHHhhcceeecc----------cccch
Confidence 9999999888777789999999998753321 222222222222222222222111 11235
Q ss_pred HHHHHHHHHhccccCccccCCCCCCCCccEEEEEcCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChHHHHHHHH
Q 007947 211 ASAVASGTVLGTFEDNRYRSESKKPVSLKSVDIIGLGTGPELEKKLKYAEHVSSAVIFGRELVNSPANVLTPAVLAEEAS 290 (583)
Q Consensus 211 ~~a~aeG~~lg~Y~f~~yKs~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~a~~~~~aRdL~n~P~N~ltP~~~A~~a~ 290 (583)
.++.++|+.|+.|+|+++|++++++ .+.+++++...+. +..|+++...++++|+||+|+++|+|.|||..|+|+++
T Consensus 141 ~e~aa~g~~l~~~~~~~~~~~~~~~-~~~~i~~~~~~~~---~~~~k~~~~~~~~~~lar~l~d~PaN~Mtp~~fae~a~ 216 (513)
T KOG2597|consen 141 AEQAAEGAALALWRYNRNKSKKNRP-SLPKIDLYGSGDG---EDAWKRGLFKAAAQNLARRLGDTPANRMTPTQFAEEAV 216 (513)
T ss_pred HHHhhcccccccccccccccccccc-ccceEEeecCCcc---hHHHHHHHHHHHHHHHHHHhccCChhhcCHHHHHHHHH
Confidence 7889999999999999999998877 7788998875422 56899999999999999999999999999999999999
Q ss_pred HHhhhcCCceEEEEeCHHHHHHcCCCchhhhcccCCCCCeEEEEEEcCCCCCCCceEEEEecceeecCCCCCCCCCCccc
Q 007947 291 KVASMYSDVLSATILDIEKCKELKMGSYLGVAAASANLPHFIHLCYKPPGGSAKIKLALVGKGLTFDSGGYNIKTGPGCL 370 (583)
Q Consensus 291 ~~~~~~~~~~~v~V~d~~~l~~~gmg~llaV~~GS~~pPrli~l~Y~g~~~~~~~~i~LVGKGiTFDsGG~slKp~~~~~ 370 (583)
+.++.++ ++++|.+++|+++++|++||+|++||++||+||+|+|+|+ ....++|+||||||||||||+||||.. .
T Consensus 217 ~~~~~~~--v~v~V~~~~~i~~~~~~~~l~V~k~s~~pP~ll~lsY~g~-~~~~~~i~lvGKGvtfDsGGl~iK~~~--~ 291 (513)
T KOG2597|consen 217 DVLCPLG--VTVEVRDEEWIEEQGMNSFLAVAKASCEPPRLLELSYKGT-SGADKTILLVGKGVTFDSGGLSIKPKT--G 291 (513)
T ss_pred HhhcccC--ceEEEechHHHhhccccceeeeccccCCCCEEEEEEEcCC-CCCcceEEEEecceEEecCccccccCC--C
Confidence 9999886 9999999999999999999999999999999999999995 456899999999999999999999988 8
Q ss_pred ccccccccchHHHHHHHHHHHHhcCCCceEEEEEEeecccCCCCCCCCCCcEEEccCCcEEEeecCCccCceehhhhhhH
Q 007947 371 IENMKYDMGGAAAVLGAAKAIGQIKPPGVEVHFIVAACENMISGTGMRPGDIITAANGKTIEVNNTDAEGRLTLADALIY 450 (583)
Q Consensus 371 M~~MK~DM~GAAaVlga~~aia~lklp~vnV~~ii~~~ENm~sg~A~rPGDVvts~~GkTVEV~NTDAEGRLvLADaL~Y 450 (583)
|+.||.||+|||+|+|+++|+++|++| +||++++|+|||||||+|+|||||||++|||||||.||||||||||||+|.|
T Consensus 292 M~~mr~dm~GAA~v~~~~~a~~~l~~~-in~~~v~plcENm~sg~A~kpgDVit~~nGKtveI~NTDAEGRLiLADaL~Y 370 (513)
T KOG2597|consen 292 MDGMRRDMGGAAVVLGAFRAAAQLSLP-INVHAVLPLCENMPSGNATKPGDVITLRNGKTVEINNTDAEGRLVLADALLY 370 (513)
T ss_pred hhhhhhhccccHHHHHHHHHHHhcCCC-CceEEEEeeeccCCCccCCCCCcEEEecCCcEEEecccCccceEEeccHHHH
Confidence 999999999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred HHh-cCCCeEEEecchhHHHHHhhCCCeEEEeeCCHHHHHHHHHHHHHhCCceeeCCCChhHHhhc-cCcccccccCCC-
Q 007947 451 ACN-QGVDKVIDLATLTGACVVALGPSVAGAFTPSDDLANEVMAASQVSGEKIWRMPLEESYWEMM-KSGVADMVNTGG- 527 (583)
Q Consensus 451 a~~-~~p~~iIDiATLTGA~~vALG~~~agvfsn~~~l~~~l~~ag~~~gE~~WrlPl~~~y~~~l-kS~vADl~N~g~- 527 (583)
|++ ++|++|||+|||||++.+|||+.++|+|+|+++||+++++||..+|||+||||||++|..++ +++.+|++|+|.
T Consensus 371 a~~~~~~~~I~d~aTLTGa~~ialG~~~~gi~Tns~~l~k~~~~Ag~~tGD~vwrmplf~~~~~~v~~~~~~D~~n~g~~ 450 (513)
T KOG2597|consen 371 AQETLKPKLIVDIATLTGAMRIALGEGAAGIFTNSEELWKRLQKAGIETGDRVWRMPLFSYYYKAVADSGLADLNNTGSG 450 (513)
T ss_pred hhhhcCCCEEEEeccchhhhHhhcCccceEEEcChHHHHHHHHHHHHhhCCceeechHHHHHHHHHhccchhhhccCCCC
Confidence 999 99999999999999999999999999999999999999999999999999999999887776 799999999994
Q ss_pred CCCchhHHHHHHhhccCCCCCeEEeeecccCCCCC------CC-CcccchHHHHHHHHHhccC
Q 007947 528 RQGGAITAALFLKQYVDEKVQWMHIDIAGPVWSEK------MR-SATGFGISTMVEWVLKNSC 583 (583)
Q Consensus 528 ~~~gaitAA~FL~~Fv~~~~~WaHlDIAG~a~~~~------~k-gaTG~gVrtL~~~l~~~~~ 583 (583)
+.+++||||+||++|+. +..|+|||||||...+. .+ .+||+|+|||+||+.+.+|
T Consensus 451 ~~s~~~~aAAfL~~~v~-~~~W~HlDiag~~~~~~~~~~y~~~~~mTg~p~~Tlve~l~q~s~ 512 (513)
T KOG2597|consen 451 RASRSCTAAAFLKEFVP-CLDWAHLDIAGPGHTDIGGTPYLHKGLMTGRPTRTLVEFLYQMSC 512 (513)
T ss_pred CCcchhHHHHHHHhhcC-cceeEeeeccCceecCCCCCcccccccccCCCceehHHHHHHhcC
Confidence 54449999999999996 78999999999973222 13 4999999999999999998
No 8
>PF02789 Peptidase_M17_N: Cytosol aminopeptidase family, N-terminal domain; InterPro: IPR008283 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M17 (leucyl aminopeptidase family, clan MF), the type example being leucyl aminopeptidase from Bos taurus (Bovine). Aminopeptidases are exopeptidases involved in the processing and regular turnover of intracellular proteins, although their precise role in cellular metabolism is unclear [, ]. Leucine aminopeptidases cleave leucine residues from the N-terminal of polypeptide chains, but substantial rates are evident for all amino acids []. The enzymes exist as homo-hexamers, comprising 2 trimers stacked on top of one another []. Each monomer binds 2 zinc ions and folds into 2 alpha/beta-type quasi-spherical globular domains, producing a comma-like shape []. The N-terminal 150 residues form a 5-stranded beta-sheet with 4 parallel and 1 anti-parallel strand sandwiched between 4 alpha-helices []. An alpha-helix extends into the C-terminal domain, which comprises a central 8-stranded saddle-shaped beta-sheet sandwiched between groups of helices, forming the monomer hydrophobic core []. A 3-stranded beta-sheet resides on the surface of the monomer, where it interacts with other members of the hexamer []. The two zinc ions and the active site are entirely located in the C-terminal catalytic domain [].; GO: 0004177 aminopeptidase activity, 0006508 proteolysis, 0005622 intracellular; PDB: 3PEI_A 1GYT_C 3JRU_A 3H8F_D 3H8G_F 3H8E_A 3KZW_L 1LAP_A 1LAN_A 1LCP_B ....
Probab=99.76 E-value=1.2e-17 Score=150.85 Aligned_cols=124 Identities=39% Similarity=0.557 Sum_probs=98.8
Q ss_pred EEEEecCCCCCCCCcccchhHHHHHHHHhhHHHHHHHhcCCCCCCCCcEEEEecC-CCCccEEEEEecCCCC-CChHHHH
Q 007947 97 AVGVTEKDMGKDDNSKFQNSILKKLDAQLGGLLSEASSEEDFTGKAGQSTVIRLP-GIGSKRVGLIGLGQSA-SRAGDFR 174 (583)
Q Consensus 97 VVgV~e~~~~~~~~s~~~~~~~~~ld~~l~g~Ls~~~~~~~f~Gk~Ge~~~l~~~-~~~~~rvllVGLGk~~-~~~~~~r 174 (583)
|||||+++. +++....+|+.+++.++++++.++|+||.||++.++.+ +...+||++||||+.+ ++.+.+|
T Consensus 1 Vv~v~~~~~--------~~~~~~~ld~~~~~~l~~~~~~~~f~gk~ge~~~l~~~~~~~~~~v~lvGlG~~~~~~~~~~r 72 (126)
T PF02789_consen 1 VVGVFEGGK--------LSPAAKALDKALDGLLSRLIKAGDFKGKAGETLLLPGPGGIKAKRVLLVGLGKKEKLTAESLR 72 (126)
T ss_dssp EEEEETTCE--------BGHHHHHHHHHTTTHHHHHHHTTSS--STT-EEEEEEETTTSCSEEEEEEEESCTGBCHHHHH
T ss_pred CEEEeCCCc--------CChHHHHHHHHHHHHHHHHHHhCCCCCCCCcEEEEecCCCCCccEEEEEECCCcCcCCHHHHH
Confidence 789998752 34556789999999999999999999999999999876 4568999999999997 8999999
Q ss_pred HHHHHHHHHHHHcccCcEEEEecCCCCCCchhHHHHHHHHHHHHHhccccCccccCCC
Q 007947 175 SLGESVAAAAKAAQASNVAVVLASSDGLSDESKLTAASAVASGTVLGTFEDNRYRSES 232 (583)
Q Consensus 175 ~~~~a~a~~~k~~~~~~v~i~l~~~~~~~~~~~~~~~~a~aeG~~lg~Y~f~~yKs~~ 232 (583)
++++.+++.+++.+.+++.+.++ .... ...+.+++++||+.|+.|+|++|||+|
T Consensus 73 ~a~~~~~~~l~~~~~~~v~i~l~-~~~~---~~~~~~~~~~~g~~l~~Y~f~~yks~K 126 (126)
T PF02789_consen 73 KAGAAAARALKKLKVKSVAIDLP-IDGE---NSDEAAEAAAEGALLGSYRFDKYKSKK 126 (126)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEGC-SSBT---TCHHHHHHHHHHHHHHT----TT-SS-
T ss_pred HHHHHHHHHHhhCCceEEEEeCc-cccc---CcHHHHHHHHHHHHHcCccCCccCCCC
Confidence 99999999999999999999998 3321 123789999999999999999999975
No 9
>PRK13009 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=79.54 E-value=29 Score=36.79 Aligned_cols=118 Identities=16% Similarity=0.219 Sum_probs=66.7
Q ss_pred HHHHHHHHhhcCCCCCCChHHHHHHHHHHhhhcCCceEEEEeCHHHHHHcCCCchhhhcccCCCCCeEEEEEEc--CCCC
Q 007947 264 SAVIFGRELVNSPANVLTPAVLAEEASKVASMYSDVLSATILDIEKCKELKMGSYLGVAAASANLPHFIHLCYK--PPGG 341 (583)
Q Consensus 264 ~~~~~aRdL~n~P~N~ltP~~~A~~a~~~~~~~~~~~~v~V~d~~~l~~~gmg~llaV~~GS~~pPrli~l~Y~--g~~~ 341 (583)
+.+++.|+|++.|+-.-.-...++...+.+++++ ++++.++. .+++.+.+.- |+..|+-++.-+|. |.+.
T Consensus 3 ~~~~~l~~Lv~ips~s~~e~~~~~~l~~~l~~~G--~~~~~~~~-----~~~~n~~~~~-g~~~~~i~l~~H~D~Vp~g~ 74 (375)
T PRK13009 3 DVLELAQDLIRRPSVTPDDAGCQDLLAERLEALG--FTCERMDF-----GDVKNLWARR-GTEGPHLCFAGHTDVVPPGD 74 (375)
T ss_pred hHHHHHHHHhCCCCCCCchhhHHHHHHHHHHHcC--CeEEEecc-----CCCcEEEEEe-cCCCCEEEEEeecccCCCCC
Confidence 4568999999999866555666777788888775 88876542 2345555543 44333222222222 1110
Q ss_pred CCC---ceE-------EEEecceeecCCCCCCCCCCcccccccccccchHHHHHHHHHHHHhcC--CCceEEEEEEeecc
Q 007947 342 SAK---IKL-------ALVGKGLTFDSGGYNIKTGPGCLIENMKYDMGGAAAVLGAAKAIGQIK--PPGVEVHFIVAACE 409 (583)
Q Consensus 342 ~~~---~~i-------~LVGKGiTFDsGG~slKp~~~~~M~~MK~DM~GAAaVlga~~aia~lk--lp~vnV~~ii~~~E 409 (583)
.+. .|. -+.|.| ..+|| +|.++.+.+++++.+.+ ++ .+|+.+.-..|
T Consensus 75 ~~~w~~~Pf~~~~~~g~iyGrG-----------------~~D~K---gg~aa~l~a~~~l~~~~~~~~-~~i~~~~~~~E 133 (375)
T PRK13009 75 LEAWTSPPFEPTIRDGMLYGRG-----------------AADMK---GSLAAFVVAAERFVAAHPDHK-GSIAFLITSDE 133 (375)
T ss_pred cccCCCCCCCcEEECCEEEecC-----------------CccCh---HHHHHHHHHHHHHHHhcCCCC-ceEEEEEEeec
Confidence 000 011 123333 22344 57788888888887654 44 57777766665
Q ss_pred c
Q 007947 410 N 410 (583)
Q Consensus 410 N 410 (583)
-
T Consensus 134 E 134 (375)
T PRK13009 134 E 134 (375)
T ss_pred c
Confidence 4
No 10
>PRK00431 RNase III inhibitor; Provisional
Probab=76.48 E-value=75 Score=30.58 Aligned_cols=110 Identities=13% Similarity=0.097 Sum_probs=63.0
Q ss_pred eEEEeecCCcccccccEEEEEEecCCCCCCCCcccchhHHHHHHHHhhHHHHH----HHhcCCCCCCCCcEEEEecCCCC
Q 007947 79 ISFAAKEVDVVEWKGDILAVGVTEKDMGKDDNSKFQNSILKKLDAQLGGLLSE----ASSEEDFTGKAGQSTVIRLPGIG 154 (583)
Q Consensus 79 ~~~~~~~~~~~~~~~D~LVVgV~e~~~~~~~~s~~~~~~~~~ld~~l~g~Ls~----~~~~~~f~Gk~Ge~~~l~~~~~~ 154 (583)
|.+.+...+..++++|++|-+..+..... ......+.+..+..+.+ .++.. -.-..|+..+......+
T Consensus 3 ~~i~i~~Gdi~~~~~daIVn~aN~~~~~~-------ggva~aI~~~~G~~l~~e~~~~~~~~-~~l~~G~~~~T~~~~l~ 74 (177)
T PRK00431 3 MRIEVVQGDITELEVDAIVNAANSSLLGG-------GGVDGAIHRAAGPEILEECRELRQQQ-GPCPTGEAVITSAGRLP 74 (177)
T ss_pred cEEEEEeCCcccccCCEEEECCCccccCC-------CcHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCeEEEecCCCCC
Confidence 45666778888999999998865543211 22334444444444443 33222 22346776655433456
Q ss_pred ccEEEEEecCCC----C-CChHHHHHHHHHHHHHHHHcccCcEEEEec
Q 007947 155 SKRVGLIGLGQS----A-SRAGDFRSLGESVAAAAKAAQASNVAVVLA 197 (583)
Q Consensus 155 ~~rvllVGLGk~----~-~~~~~~r~~~~a~a~~~k~~~~~~v~i~l~ 197 (583)
.+.|+-+ +|.. . ...+.+++....+...+.+.+.+++++-.-
T Consensus 75 ~~~IiH~-v~P~~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIa~P~l 121 (177)
T PRK00431 75 AKYVIHT-VGPVWRGGEDNEAELLASAYRNSLRLAAELGLRSIAFPAI 121 (177)
T ss_pred CCEEEEe-cCCeecCCCCcHHHHHHHHHHHHHHHHHHcCCceEEECcc
Confidence 6666554 1221 1 234667777777777778888887776443
No 11
>PRK06915 acetylornithine deacetylase; Validated
Probab=73.50 E-value=36 Score=36.95 Aligned_cols=42 Identities=12% Similarity=0.026 Sum_probs=34.3
Q ss_pred HHHHHHHHHhhcCCCCCCChHHHHHHHHHHhhhcCCceEEEEeC
Q 007947 263 SSAVIFGRELVNSPANVLTPAVLAEEASKVASMYSDVLSATILD 306 (583)
Q Consensus 263 a~~~~~aRdL~n~P~N~ltP~~~A~~a~~~~~~~~~~~~v~V~d 306 (583)
-+.+.+.|+|+..|+---.....++...+..++++ ++++++.
T Consensus 17 ~~~~~~l~~lv~ips~s~~e~~~~~~l~~~l~~~G--~~~~~~~ 58 (422)
T PRK06915 17 EEAVKLLKRLIQEKSVSGDESGAQAIVIEKLRELG--LDLDIWE 58 (422)
T ss_pred HHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhcC--CeeEEee
Confidence 35678999999999977777888888888888875 8887764
No 12
>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]
Probab=72.53 E-value=3.3 Score=44.14 Aligned_cols=141 Identities=23% Similarity=0.286 Sum_probs=90.1
Q ss_pred chHHHHHHHHHHHHhcCCCceEEE--E--EEeecccCCCCCCCCCCcEEEccCCcEEEeecCCccCceehhhhhhHHHhc
Q 007947 379 GGAAAVLGAAKAIGQIKPPGVEVH--F--IVAACENMISGTGMRPGDIITAANGKTIEVNNTDAEGRLTLADALIYACNQ 454 (583)
Q Consensus 379 ~GAAaVlga~~aia~lklp~vnV~--~--ii~~~ENm~sg~A~rPGDVvts~~GkTVEV~NTDAEGRLvLADaL~Ya~~~ 454 (583)
+=.+|+..++. .++-| ++|. | ++-..||||.-.-.++||-|++-||+.++ -..|.+.|.+..
T Consensus 109 Sq~~A~y~A~~---~a~~p-v~~~y~gvyv~~v~~~~~~~gkl~~gD~i~avdg~~f~----------s~~e~i~~v~~~ 174 (342)
T COG3480 109 SQNAAIYAAYK---YAGKP-VEVTYAGVYVLSVIDNSPFKGKLEAGDTIIAVDGEPFT----------SSDELIDYVSSK 174 (342)
T ss_pred hhhHHHHHHHH---HcCCc-eEEEEeeEEEEEccCCcchhceeccCCeEEeeCCeecC----------CHHHHHHHHhcc
Confidence 44555655554 44445 5553 3 35566899999999999999999999875 457888998877
Q ss_pred CCCeEEEecchhHHHHHhhCCCeEEEeeC-C-------------HHHHHHHHHHHHHhCCceeeCCCChhHHhhccCccc
Q 007947 455 GVDKVIDLATLTGACVVALGPSVAGAFTP-S-------------DDLANEVMAASQVSGEKIWRMPLEESYWEMMKSGVA 520 (583)
Q Consensus 455 ~p~~iIDiATLTGA~~vALG~~~agvfsn-~-------------~~l~~~l~~ag~~~gE~~WrlPl~~~y~~~lkS~vA 520 (583)
+| |.+.+=-|.. + |+--+..+--+-....++|-=|--+ -
T Consensus 175 k~-----------------Gd~VtI~~~r~~~~~~~~~~tl~~~~~~g~~giGIsl~d~~~v~~~~~V~----------~ 227 (342)
T COG3480 175 KP-----------------GDEVTIDYERHNETPEIVTITLIKNDDNGKAGIGISLVDAPEVWAPPDVD----------F 227 (342)
T ss_pred CC-----------------CCeEEEEEEeccCCCceEEEEEEeeccCCcceeeeEeecCcccccCCceE----------e
Confidence 65 3333333331 1 1000000001111113355444322 2
Q ss_pred ccccCCCCCCchhHHHHHHhhccCCCCCeEEeeecccCCCC
Q 007947 521 DMVNTGGRQGGAITAALFLKQYVDEKVQWMHIDIAGPVWSE 561 (583)
Q Consensus 521 Dl~N~g~~~~gaitAA~FL~~Fv~~~~~WaHlDIAG~a~~~ 561 (583)
|+.|+||+.+|-...=....++..++..| -..||||..-+
T Consensus 228 ~~~~IGGPSAGLMFSL~Iy~qlt~~DL~~-g~~IAGTGTI~ 267 (342)
T COG3480 228 NTENIGGPSAGLMFSLAIYDQLTKGDLTG-GRFIAGTGTIE 267 (342)
T ss_pred ecccCCCCchhheeeHHHHhhcccccccC-ceEEecceeec
Confidence 67789999999988888899999888899 78999997543
No 13
>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases. Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=72.31 E-value=3.7 Score=33.86 Aligned_cols=26 Identities=31% Similarity=0.518 Sum_probs=22.2
Q ss_pred ecccCCCCCCCCCCcEEEccCCcEEE
Q 007947 407 ACENMISGTGMRPGDIITAANGKTIE 432 (583)
Q Consensus 407 ~~ENm~sg~A~rPGDVvts~~GkTVE 432 (583)
..+|.|.....+|||+|.+.||++|.
T Consensus 15 V~~~s~A~~gL~~GD~I~~Ing~~v~ 40 (79)
T cd00986 15 VVEGMPAAGKLKAGDHIIAVDGKPFK 40 (79)
T ss_pred ECCCCchhhCCCCCCEEEEECCEECC
Confidence 35788877789999999999999865
No 14
>PRK04443 acetyl-lysine deacetylase; Provisional
Probab=71.80 E-value=57 Score=34.54 Aligned_cols=117 Identities=21% Similarity=0.117 Sum_probs=66.7
Q ss_pred HHHHHHHHHhhcCCCCCCChHHHHHHHHHHhhhcCCceEEEEeCHHHHHHcCCCchhhhcccCCCCCeEEEEEEcCCCCC
Q 007947 263 SSAVIFGRELVNSPANVLTPAVLAEEASKVASMYSDVLSATILDIEKCKELKMGSYLGVAAASANLPHFIHLCYKPPGGS 342 (583)
Q Consensus 263 a~~~~~aRdL~n~P~N~ltP~~~A~~a~~~~~~~~~~~~v~V~d~~~l~~~gmg~llaV~~GS~~pPrli~l~Y~g~~~~ 342 (583)
.+.+.+.++|++.|+---.-...++...+.+++++ ++|++.+ .+.+++. .|+. +|.++...+--.-.
T Consensus 6 ~~~~~~l~~Lv~i~s~s~~e~~~~~~l~~~l~~~G--~~~~~~~--------~~n~i~~-~~~~-~~~l~~~~H~DtVp- 72 (348)
T PRK04443 6 LEARELLKGLVEIPSPSGEEAAAAEFLVEFMESHG--REAWVDE--------AGNARGP-AGDG-PPLVLLLGHIDTVP- 72 (348)
T ss_pred HHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHcC--CEEEEcC--------CCcEEEE-cCCC-CCEEEEEeeccccC-
Confidence 34678999999999987777788888889888875 8887643 2344443 2333 34544333221000
Q ss_pred CCceEEEEecceeecCCCCCCCCCCcccccccccccchHHHHHHHHHHHHhcCCCceEEEEEEeecc
Q 007947 343 AKIKLALVGKGLTFDSGGYNIKTGPGCLIENMKYDMGGAAAVLGAAKAIGQIKPPGVEVHFIVAACE 409 (583)
Q Consensus 343 ~~~~i~LVGKGiTFDsGG~slKp~~~~~M~~MK~DM~GAAaVlga~~aia~lklp~vnV~~ii~~~E 409 (583)
...|. +.+ || .|-- . +-.+|| +|.|+++-+++++ +.+++ .+|+.++-.-|
T Consensus 73 ~~~p~-------~~~-~g-~iyG-r--G~~D~K---g~~aa~l~A~~~l-~~~~~-~~i~~~~~~dE 122 (348)
T PRK04443 73 GDIPV-------RVE-DG-VLWG-R--GSVDAK---GPLAAFAAAAARL-EALVR-ARVSFVGAVEE 122 (348)
T ss_pred CCCCc-------Eee-CC-eEEe-e--cccccc---cHHHHHHHHHHHh-cccCC-CCEEEEEEccc
Confidence 01111 111 11 1221 1 112344 6788888888888 66666 57766665544
No 15
>PRK13004 peptidase; Reviewed
Probab=71.50 E-value=58 Score=35.18 Aligned_cols=111 Identities=17% Similarity=0.172 Sum_probs=66.0
Q ss_pred HHHHHHHHhhcCCCCCCChHHHHHHHHHHhhhcCCceEEEEeCHHHHHHcCCCchhhhcccCCCCCeEEEEEEc---CCC
Q 007947 264 SAVIFGRELVNSPANVLTPAVLAEEASKVASMYSDVLSATILDIEKCKELKMGSYLGVAAASANLPHFIHLCYK---PPG 340 (583)
Q Consensus 264 ~~~~~aRdL~n~P~N~ltP~~~A~~a~~~~~~~~~~~~v~V~d~~~l~~~gmg~llaV~~GS~~pPrli~l~Y~---g~~ 340 (583)
+.+.+-++|++.|+---.-...++...+.+++++ +++..+| +.+.++++-.|+ +|.++...+- +.+
T Consensus 16 ~~~~~l~~lv~ips~s~~e~~~a~~l~~~l~~~G--~~~~~~~-------~~~n~~a~~~~~--~~~i~~~~H~DtVp~~ 84 (399)
T PRK13004 16 DMTRFLRDLIRIPSESGDEKRVVKRIKEEMEKVG--FDKVEID-------PMGNVLGYIGHG--KKLIAFDAHIDTVGIG 84 (399)
T ss_pred HHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHcC--CcEEEEc-------CCCeEEEEECCC--CcEEEEEeccCccCCC
Confidence 5678999999999988788888888888888875 7654443 234566554443 2444433332 111
Q ss_pred CCC---CceE-------EEEecceeecCCCCCCCCCCcccccccccccchHHHHHHHHHHHHhcCCC-ceEEEEEE
Q 007947 341 GSA---KIKL-------ALVGKGLTFDSGGYNIKTGPGCLIENMKYDMGGAAAVLGAAKAIGQIKPP-GVEVHFIV 405 (583)
Q Consensus 341 ~~~---~~~i-------~LVGKGiTFDsGG~slKp~~~~~M~~MK~DM~GAAaVlga~~aia~lklp-~vnV~~ii 405 (583)
+.. ..|. -|.|.|. .+| .+|.|+.+.+++++.+.+.+ +.+|+.+.
T Consensus 85 ~~~~w~~~P~~~~~~~g~lyGrG~-----------------~D~---Kg~~aa~l~a~~~l~~~~~~~~~~i~~~~ 140 (399)
T PRK13004 85 DIKNWDFDPFEGEEDDGRIYGRGT-----------------SDQ---KGGMASMVYAAKIIKDLGLDDEYTLYVTG 140 (399)
T ss_pred ChhhcccCCCccEEECCEEEeCCc-----------------ccc---chHHHHHHHHHHHHHhcCCCCCCeEEEEE
Confidence 100 0111 2233331 122 37899999999999887643 24554443
No 16
>cd02903 Macro_BAL_like Macro domain, BAL_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family show similarity to BAL (B-aggressive lymphoma) proteins, which contain one to three macro domains. Most BAL family macro domains belong to this family except for the most N-terminal domain in multiple-domain containing proteins. Most BAL proteins also contain a C-termin
Probab=71.01 E-value=88 Score=28.94 Aligned_cols=109 Identities=10% Similarity=0.086 Sum_probs=60.1
Q ss_pred EEEeecCCcccccccEEEEEEecC-CCCCCCCcccchhHHHHHHHHhhHHHHHHHhcCCCCCCCCcEEEEecCCCCccEE
Q 007947 80 SFAAKEVDVVEWKGDILAVGVTEK-DMGKDDNSKFQNSILKKLDAQLGGLLSEASSEEDFTGKAGQSTVIRLPGIGSKRV 158 (583)
Q Consensus 80 ~~~~~~~~~~~~~~D~LVVgV~e~-~~~~~~~s~~~~~~~~~ld~~l~g~Ls~~~~~~~f~Gk~Ge~~~l~~~~~~~~rv 158 (583)
++.+...|..++++|++|-+..+. .... ......+-+..+..+.+..++..-.-..|+..+...-..+.++|
T Consensus 2 ~i~i~~GdI~~~~~DaIVN~an~~~~~~~-------ggv~~aI~~~~G~~l~~~~~~~~~~~~~G~~~vT~~~~L~~k~I 74 (137)
T cd02903 2 TLQVAKGDIEDETTDVIVNSVNPDLFLLK-------GGVSKAILRKAGPELQKELDKAKLGQTVGSVIVTKGGNLPCKYV 74 (137)
T ss_pred EEEEEeCccCCccCCEEEECCCCccCCCC-------CCHHHHHHHhccHHHHHHHHHHcCCCCCCeEEEecCCCCCCCEE
Confidence 345567788889999999887665 3211 12233444444444544444221111146755443324566776
Q ss_pred EEEecCCCC--CChHHHHHHHHHHHHHHHHcccCcEEEEe
Q 007947 159 GLIGLGQSA--SRAGDFRSLGESVAAAAKAAQASNVAVVL 196 (583)
Q Consensus 159 llVGLGk~~--~~~~~~r~~~~a~a~~~k~~~~~~v~i~l 196 (583)
+-+ .+... .....+++......+.+.+.+.+++++-.
T Consensus 75 iH~-~~p~~~~~~~~~l~~~~~~~L~~a~~~~~~SIAfP~ 113 (137)
T cd02903 75 YHV-VLPNWSNGALKILKDIVSECLEKCEELSYTSISFPA 113 (137)
T ss_pred EEe-cCCCCCCchHHHHHHHHHHHHHHHHHCCCcEEEECC
Confidence 544 23322 12355666666667777788888877643
No 17
>PRK06837 acetylornithine deacetylase; Provisional
Probab=70.79 E-value=95 Score=33.94 Aligned_cols=43 Identities=16% Similarity=0.142 Sum_probs=34.4
Q ss_pred HHHHHHHHHhhcCCCCCCChHHHHHHHHHHhhhcCCceEEEEeCH
Q 007947 263 SSAVIFGRELVNSPANVLTPAVLAEEASKVASMYSDVLSATILDI 307 (583)
Q Consensus 263 a~~~~~aRdL~n~P~N~ltP~~~A~~a~~~~~~~~~~~~v~V~d~ 307 (583)
-+.+.+-|+|++.|+-.-.-...++..++.+++++ ++++++..
T Consensus 20 ~~~~~~l~~li~ipS~s~~e~~~~~~l~~~l~~~G--~~~~~~~~ 62 (427)
T PRK06837 20 DAQVAFTQDLVRFPSTRGAEAPCQDFLARAFRERG--YEVDRWSI 62 (427)
T ss_pred HHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHCC--CceEEecC
Confidence 35678899999999987777778888888888875 88887653
No 18
>PRK06133 glutamate carboxypeptidase; Reviewed
Probab=70.41 E-value=1e+02 Score=33.47 Aligned_cols=128 Identities=16% Similarity=0.091 Sum_probs=71.4
Q ss_pred HHHHHHHHHhhcCCCCCCChH---HHHHHHHHHhhhcCCceEEEEeCHHHHHHcCCCchhhhcccCCCCCeEEEEEEcC-
Q 007947 263 SSAVIFGRELVNSPANVLTPA---VLAEEASKVASMYSDVLSATILDIEKCKELKMGSYLGVAAASANLPHFIHLCYKP- 338 (583)
Q Consensus 263 a~~~~~aRdL~n~P~N~ltP~---~~A~~a~~~~~~~~~~~~v~V~d~~~l~~~gmg~llaV~~GS~~pPrli~l~Y~g- 338 (583)
-+.+.+-++|++.|+-.-... ..++..++.+++++ +++++.+.+ ..+-..+++.-.|+..|+-++.-+|.-
T Consensus 37 ~~~~~~l~~lv~i~S~s~~~~~~~~~~~~l~~~L~~~G--~~v~~~~~~---~~~~~~lia~~~g~~~~~ill~~H~D~V 111 (410)
T PRK06133 37 PAYLDTLKELVSIESGSGDAEGLKQVAALLAERLKALG--AKVERAPTP---PSAGDMVVATFKGTGKRRIMLIAHMDTV 111 (410)
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHhCC--CeEEEEccC---CCCCCeEEEEECCCCCceEEEEeecCcc
Confidence 356788899999988654443 57888888888875 888776421 112245666545543333333333321
Q ss_pred -CCCC-CCceEEEEecceeecCCCCCCCCCCcccccccccccchHHHHHHHHHHHHhcCCC-ceEEEEEEeeccc
Q 007947 339 -PGGS-AKIKLALVGKGLTFDSGGYNIKTGPGCLIENMKYDMGGAAAVLGAAKAIGQIKPP-GVEVHFIVAACEN 410 (583)
Q Consensus 339 -~~~~-~~~~i~LVGKGiTFDsGG~slKp~~~~~M~~MK~DM~GAAaVlga~~aia~lklp-~vnV~~ii~~~EN 410 (583)
..+. ...|... .|| .|. +. +.-+|| +|.|+.+.+++++.+.+.+ .-+|+.++-..|-
T Consensus 112 p~~~~w~~~Pf~~--------~~~-~iy-Gr--G~~D~k---gg~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE 171 (410)
T PRK06133 112 YLPGMLAKQPFRI--------DGD-RAY-GP--GIADDK---GGVAVILHALKILQQLGFKDYGTLTVLFNPDEE 171 (410)
T ss_pred CCCCccCCCCEEE--------ECC-EEE-CC--ccccch---HHHHHHHHHHHHHHHcCCCCCCCEEEEEECCcc
Confidence 1110 1223321 122 122 12 223466 6789999999999887632 1477777655554
No 19
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=69.13 E-value=1.8 Score=36.22 Aligned_cols=46 Identities=24% Similarity=0.384 Sum_probs=30.8
Q ss_pred ecccCCCCCC-CCCCcEEEccCCcEEEeecCCccCceehhhhhhHHHhcCCCeEEEe
Q 007947 407 ACENMISGTG-MRPGDIITAANGKTIEVNNTDAEGRLTLADALIYACNQGVDKVIDL 462 (583)
Q Consensus 407 ~~ENm~sg~A-~rPGDVvts~~GkTVEV~NTDAEGRLvLADaL~Ya~~~~p~~iIDi 462 (583)
..+|.|...+ ++|||+|.+.||+.| ++. .|...+-.+..|..-|.+
T Consensus 21 V~~~spA~~aGl~~GD~I~~ing~~v----~~~------~~~~~~l~~~~~g~~v~l 67 (82)
T PF13180_consen 21 VIPGSPAAKAGLQPGDIILAINGKPV----NSS------EDLVNILSKGKPGDTVTL 67 (82)
T ss_dssp ESTTSHHHHTTS-TTEEEEEETTEES----SSH------HHHHHHHHCSSTTSEEEE
T ss_pred eCCCCcHHHCCCCCCcEEEEECCEEc----CCH------HHHHHHHHhCCCCCEEEE
Confidence 5778887777 999999999999998 221 444444445555554443
No 20
>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=68.81 E-value=8.1 Score=32.11 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=21.8
Q ss_pred ecccCCCCC-CCCCCcEEEccCCcEEE
Q 007947 407 ACENMISGT-GMRPGDIITAANGKTIE 432 (583)
Q Consensus 407 ~~ENm~sg~-A~rPGDVvts~~GkTVE 432 (583)
..+|.|... .+++||+|.+.||+.|.
T Consensus 17 V~~~spa~~aGL~~GDiI~~Ing~~v~ 43 (79)
T cd00991 17 VIVGSPAENAVLHTGDVIYSINGTPIT 43 (79)
T ss_pred ECCCChHHhcCCCCCCEEEEECCEEcC
Confidence 457888774 49999999999999886
No 21
>PRK09104 hypothetical protein; Validated
Probab=68.71 E-value=61 Score=35.85 Aligned_cols=42 Identities=14% Similarity=0.073 Sum_probs=31.6
Q ss_pred HHHHHHHHHhhcCCCCCCCh------HHHHHHHHHHhhhcCCceEEEEeC
Q 007947 263 SSAVIFGRELVNSPANVLTP------AVLAEEASKVASMYSDVLSATILD 306 (583)
Q Consensus 263 a~~~~~aRdL~n~P~N~ltP------~~~A~~a~~~~~~~~~~~~v~V~d 306 (583)
-+.+.+.++|+..|+-.-.| ..+++..++..++.+ +++++++
T Consensus 17 ~~~~~~L~~lv~i~Svs~~~~~~~~~~~~~~~l~~~l~~~G--~~v~~~~ 64 (464)
T PRK09104 17 DASLERLFALLRIPSISTDPAYAADCRKAADWLVADLASLG--FEASVRD 64 (464)
T ss_pred HHHHHHHHHHhcCCCCCCCccchHHHHHHHHHHHHHHHHCC--CeEEEEe
Confidence 35678899999999855434 456777778888775 8998876
No 22
>TIGR01910 DapE-ArgE acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase. This group of sequences contains annotations for both acetylornithine deacetylase and succinyl-diaminopimelate desuccinylase, but does not contain any members with experimental characterization. Bacillus, Staphylococcus and Sulfolobus species contain multiple hits to this subfamily and each may have a separate activity. Determining which is which must await further laboratory research.
Probab=67.93 E-value=34 Score=36.50 Aligned_cols=38 Identities=11% Similarity=0.239 Sum_probs=28.6
Q ss_pred HHHHHhhcCCC---CCCChHHHHHHHHHHhhhcCCceEEEEeC
Q 007947 267 IFGRELVNSPA---NVLTPAVLAEEASKVASMYSDVLSATILD 306 (583)
Q Consensus 267 ~~aRdL~n~P~---N~ltP~~~A~~a~~~~~~~~~~~~v~V~d 306 (583)
.+-|+|++.|+ .--.-...++..++.+++.+ +++++.+
T Consensus 2 ~~l~~lv~i~s~~~~~~~e~~~a~~l~~~l~~~G--~~~~~~~ 42 (375)
T TIGR01910 2 ELLKDLISIPSVNPPGGNEETIANYIKDLLREFG--FSTDVIE 42 (375)
T ss_pred hhHHhhhcCCCCCCCCcCHHHHHHHHHHHHHHCC--CceEEEe
Confidence 46788999998 44455677888888888775 8887764
No 23
>PRK13983 diaminopimelate aminotransferase; Provisional
Probab=66.78 E-value=38 Score=36.12 Aligned_cols=42 Identities=19% Similarity=0.142 Sum_probs=30.1
Q ss_pred HHHHHHHHhhcCCCCCCC-----hHHHHHHHHHHhhhcCCceE-EEEeCH
Q 007947 264 SAVIFGRELVNSPANVLT-----PAVLAEEASKVASMYSDVLS-ATILDI 307 (583)
Q Consensus 264 ~~~~~aRdL~n~P~N~lt-----P~~~A~~a~~~~~~~~~~~~-v~V~d~ 307 (583)
+.+.+.|+|+..|+..-+ -...++...+.+++++ ++ +++.+.
T Consensus 6 ~~~~~l~~lv~i~s~s~~~~~~~e~~~~~~l~~~l~~~G--~~~~~~~~~ 53 (400)
T PRK13983 6 EMIELLSELIAIPAVNPDFGGEGEKEKAEYLESLLKEYG--FDEVERYDA 53 (400)
T ss_pred HHHHHHHHHhCcCCCCCCCCCccHHHHHHHHHHHHHHcC--CceEEEEec
Confidence 457889999999886422 3466777788888775 87 777653
No 24
>PRK07473 carboxypeptidase; Provisional
Probab=66.28 E-value=87 Score=33.74 Aligned_cols=126 Identities=17% Similarity=0.219 Sum_probs=64.0
Q ss_pred HHHHHHHHHhhcCCCCCCChH---HHHHHHHHHhhhcCCceEEEEeCHHHHHHcCCC-chhhhcccC-CCCCeEEE-EEE
Q 007947 263 SSAVIFGRELVNSPANVLTPA---VLAEEASKVASMYSDVLSATILDIEKCKELKMG-SYLGVAAAS-ANLPHFIH-LCY 336 (583)
Q Consensus 263 a~~~~~aRdL~n~P~N~ltP~---~~A~~a~~~~~~~~~~~~v~V~d~~~l~~~gmg-~llaV~~GS-~~pPrli~-l~Y 336 (583)
.+-+.+.++|++.|+..-.+. .+++...+..+..+ +++++.+... |.+ .+++.-.|+ ..+|.++. =+|
T Consensus 11 ~~~~~~l~~Lv~i~S~s~~~~~~~~~~~~l~~~l~~~G--~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~lll~gH~ 84 (376)
T PRK07473 11 EAMLAGLRPWVECESPTWDAAAVNRMLDLAARDMAIMG--ATIERIPGRQ----GFGDCVRARFPHPRQGEPGILIAGHM 84 (376)
T ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHcC--CeEEEecCCC----CCCCeEEEEeCCCCCCCCeEEEEecC
Confidence 345688999999998877776 44445555666664 8888754211 322 233322222 22333332 222
Q ss_pred c--CCCCC-CCceEEEEecceeecCCCCCCCCCCcccccccccccchHHHHHHHHHHHHhcC--CCceEEEEEEeeccc
Q 007947 337 K--PPGGS-AKIKLALVGKGLTFDSGGYNIKTGPGCLIENMKYDMGGAAAVLGAAKAIGQIK--PPGVEVHFIVAACEN 410 (583)
Q Consensus 337 ~--g~~~~-~~~~i~LVGKGiTFDsGG~slKp~~~~~M~~MK~DM~GAAaVlga~~aia~lk--lp~vnV~~ii~~~EN 410 (583)
. ++.+. ...|....+ |..| +. +--+|| +|-|+.+.+++++.+.+ ++ .+|+.++-.-|=
T Consensus 85 DtV~~~~~~~~~p~~~~~-g~ly---------Gr--G~~D~K---gglaa~l~A~~~l~~~~~~~~-~~v~~~~~~dEE 147 (376)
T PRK07473 85 DTVHPVGTLEKLPWRREG-NKCY---------GP--GILDMK---GGNYLALEAIRQLARAGITTP-LPITVLFTPDEE 147 (376)
T ss_pred CCCCCCCCccCCCeEEEC-CEEE---------cC--chhhch---HHHHHHHHHHHHHHHcCCCCC-CCEEEEEeCCcc
Confidence 2 11111 111221111 2222 11 122344 67899999999998775 34 566665544443
No 25
>PRK07522 acetylornithine deacetylase; Provisional
Probab=65.13 E-value=66 Score=34.26 Aligned_cols=127 Identities=14% Similarity=0.105 Sum_probs=67.2
Q ss_pred HHHHHHHHHhhcCCCCCCChH-HHHHHHHHHhhhcCCceEEEEeCHHHHHHcCCCchhhhcccCCCCCeEEEEE-Ec--C
Q 007947 263 SSAVIFGRELVNSPANVLTPA-VLAEEASKVASMYSDVLSATILDIEKCKELKMGSYLGVAAASANLPHFIHLC-YK--P 338 (583)
Q Consensus 263 a~~~~~aRdL~n~P~N~ltP~-~~A~~a~~~~~~~~~~~~v~V~d~~~l~~~gmg~llaV~~GS~~pPrli~l~-Y~--g 338 (583)
.+.+.+.++|+..|+-.-.+. .+++...+..++++ +++++++... .+-+.+++.-.|. ..|.++... +. +
T Consensus 4 ~~~~~~l~~lv~i~S~s~~~~~~~~~~l~~~l~~~G--~~~~~~~~~~---~~~~nv~a~~~~~-~~~~ill~~H~Dtv~ 77 (385)
T PRK07522 4 MSSLDILERLVAFDTVSRDSNLALIEWVRDYLAAHG--VESELIPDPE---GDKANLFATIGPA-DRGGIVLSGHTDVVP 77 (385)
T ss_pred hhHHHHHHHHhCCCCcCCCccHHHHHHHHHHHHHcC--CeEEEEecCC---CCcccEEEEeCCC-CCCeEEEEeeccccc
Confidence 456789999999998544553 88888888888885 8888764221 1112334332332 233333222 21 1
Q ss_pred CCCC--CCceEEE-EecceeecCCCCCCCCCCcccccccccccchHHHHHHHHHHHHhcCCCceEEEEEEeeccc
Q 007947 339 PGGS--AKIKLAL-VGKGLTFDSGGYNIKTGPGCLIENMKYDMGGAAAVLGAAKAIGQIKPPGVEVHFIVAACEN 410 (583)
Q Consensus 339 ~~~~--~~~~i~L-VGKGiTFDsGG~slKp~~~~~M~~MK~DM~GAAaVlga~~aia~lklp~vnV~~ii~~~EN 410 (583)
.+.+ ...|... +-.|..|=-| --+| .+|.|+.+.+++++.+.+++ -+|..+.-..|-
T Consensus 78 ~~~~~W~~~pf~~~~~~g~i~GrG-----------~~D~---Kg~~a~~l~a~~~l~~~~~~-~~i~~~~~~dEE 137 (385)
T PRK07522 78 VDGQAWTSDPFRLTERDGRLYGRG-----------TCDM---KGFIAAALAAVPELAAAPLR-RPLHLAFSYDEE 137 (385)
T ss_pred CCCCCCCCCCCceEEECCEEEecc-----------cccc---chHHHHHHHHHHHHHhCCCC-CCEEEEEEeccc
Confidence 1100 0011111 1111111111 0123 45788888999999887766 466666655553
No 26
>cd02908 Macro_Appr_pase_like Macro domain, Appr-1"-pase_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins that show similarity to Appr-1"-pase, containing conserved putative active site residues. Appr-1"-pase is a phosphatase specific for ADP-ribose-1"-monophosphate.
Probab=63.20 E-value=1.4e+02 Score=28.41 Aligned_cols=107 Identities=15% Similarity=0.096 Sum_probs=63.9
Q ss_pred eecCCcccccccEEEEEEecCCCCCCCCcccchhHHHHHHHHhhHHHHHHHhcCCCCCCCCcEEEEecCCCCccEEEEEe
Q 007947 83 AKEVDVVEWKGDILAVGVTEKDMGKDDNSKFQNSILKKLDAQLGGLLSEASSEEDFTGKAGQSTVIRLPGIGSKRVGLIG 162 (583)
Q Consensus 83 ~~~~~~~~~~~D~LVVgV~e~~~~~~~~s~~~~~~~~~ld~~l~g~Ls~~~~~~~f~Gk~Ge~~~l~~~~~~~~rvllVG 162 (583)
+...+..++++|++|-+..+.... ..+....+-+..+..|.+-.+... .-+.|+..+...-..+.++|+-+
T Consensus 4 i~~GdI~~~~~daIVn~an~~l~~-------~ggv~~ai~~~~G~~l~~e~~~~~-~~~~G~~v~T~~~~l~~~~IiH~- 74 (165)
T cd02908 4 IIQGDITKLEVDAIVNAANSSLLG-------GGGVDGAIHRAAGPELLEECRELR-GCPTGEAVITSGYNLPAKYVIHT- 74 (165)
T ss_pred EEecccceeecCEEEECCCCcccC-------CCcHHHHHHHHhCHHHHHHHHHhC-CCCCCCEEEeeCCCCCCCEEEEE-
Confidence 355777788999999887665321 123345555566555555444322 22788876554434566766554
Q ss_pred cCCC-----CCChHHHHHHHHHHHHHHHHcccCcEEEEecC
Q 007947 163 LGQS-----ASRAGDFRSLGESVAAAAKAAQASNVAVVLAS 198 (583)
Q Consensus 163 LGk~-----~~~~~~~r~~~~a~a~~~k~~~~~~v~i~l~~ 198 (583)
+|.. ..+.+.++.....+.+.+.+.+.+++++-+-.
T Consensus 75 v~P~~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIa~P~ig 115 (165)
T cd02908 75 VGPVWRGGQHNEAELLASCYRNSLELARENGLRSIAFPAIS 115 (165)
T ss_pred cCCcccCCCCcHHHHHHHHHHHHHHHHHHcCCCEEEECcee
Confidence 2221 12356677777777777888888888764433
No 27
>PRK08652 acetylornithine deacetylase; Provisional
Probab=63.10 E-value=76 Score=33.11 Aligned_cols=118 Identities=20% Similarity=0.187 Sum_probs=66.4
Q ss_pred HHHHHHHHhhcCCCCCCChHHHHHHHHHHhhhcCCceEEEEeCHHHHHHcCCCchhhhcccCCCCCeEEEEEEcCCCCCC
Q 007947 264 SAVIFGRELVNSPANVLTPAVLAEEASKVASMYSDVLSATILDIEKCKELKMGSYLGVAAASANLPHFIHLCYKPPGGSA 343 (583)
Q Consensus 264 ~~~~~aRdL~n~P~N~ltP~~~A~~a~~~~~~~~~~~~v~V~d~~~l~~~gmg~llaV~~GS~~pPrli~l~Y~g~~~~~ 343 (583)
+.+.+.++|+..|.---.-...++...+..++++ +++++.... +...+++ |+ .|+-++.-+|.-- ...
T Consensus 3 ~~~~~~~~lv~ips~s~~e~~~~~~l~~~l~~~G--~~v~~~~~~-----~~~~~~~---~~-~~~i~l~~H~D~v-p~~ 70 (347)
T PRK08652 3 RAKELLKQLVKIPSPSGQEDEIALHIMEFLESLG--YDVHIESDG-----EVINIVV---NS-KAELFVEVHYDTV-PVR 70 (347)
T ss_pred hHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHcC--CEEEEEecC-----ceeEEEc---CC-CCEEEEEcccccc-CCC
Confidence 3468899999999866666777888888888875 888764422 1233443 32 2444444444321 111
Q ss_pred CceEEEEecceeecCCCCCCCCCCcccccccccccchHHHHHHHHHHHHhcCCCceEEEEEEeeccc
Q 007947 344 KIKLALVGKGLTFDSGGYNIKTGPGCLIENMKYDMGGAAAVLGAAKAIGQIKPPGVEVHFIVAACEN 410 (583)
Q Consensus 344 ~~~i~LVGKGiTFDsGG~slKp~~~~~M~~MK~DM~GAAaVlga~~aia~lklp~vnV~~ii~~~EN 410 (583)
.++. .+ ||.-..++ ..+|| +|.|+++.+++++.+..++ -+|+.+.-..|-
T Consensus 71 ~~~~--------~~-~g~iyGrG----~~D~K---g~~a~~l~a~~~l~~~~~~-~~v~~~~~~dEE 120 (347)
T PRK08652 71 AEFF--------VD-GVYVYGTG----ACDAK---GGVAAILLALEELGKEFED-LNVGIAFVSDEE 120 (347)
T ss_pred CCCE--------EE-CCEEEecc----chhhh---HHHHHHHHHHHHHhhcccC-CCEEEEEecCcc
Confidence 1111 11 33222222 22344 7889999999988766544 355555444555
No 28
>PRK08588 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=62.52 E-value=1.2e+02 Score=32.33 Aligned_cols=41 Identities=7% Similarity=0.033 Sum_probs=31.8
Q ss_pred HHHHHHHHhhcCCCCCCChHHHHHHHHHHhhhcCCceEEEEeC
Q 007947 264 SAVIFGRELVNSPANVLTPAVLAEEASKVASMYSDVLSATILD 306 (583)
Q Consensus 264 ~~~~~aRdL~n~P~N~ltP~~~A~~a~~~~~~~~~~~~v~V~d 306 (583)
+.+.+.++|++.|+=--.....++...+.+++++ +++++.+
T Consensus 3 ~~~~~l~~Lv~i~s~s~~e~~~~~~l~~~l~~~G--~~~~~~~ 43 (377)
T PRK08588 3 EKIQILADIVKINSVNDNEIEVANYLQDLFAKHG--IESKIVK 43 (377)
T ss_pred HHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHCC--CceEEEe
Confidence 3567888999999865677788888888888875 8877654
No 29
>PRK07906 hypothetical protein; Provisional
Probab=62.25 E-value=49 Score=36.03 Aligned_cols=118 Identities=18% Similarity=0.211 Sum_probs=66.1
Q ss_pred HHHHHHhhcCCCCC------CChHHHHHHHHHHhhhcCCceEEEEeCHHHHHHcCCCchhhhcccCCC-CCeEEEE-EEc
Q 007947 266 VIFGRELVNSPANV------LTPAVLAEEASKVASMYSDVLSATILDIEKCKELKMGSYLGVAAASAN-LPHFIHL-CYK 337 (583)
Q Consensus 266 ~~~aRdL~n~P~N~------ltP~~~A~~a~~~~~~~~~~~~v~V~d~~~l~~~gmg~llaV~~GS~~-pPrli~l-~Y~ 337 (583)
+.+.++|+..|+-. -.-...++...+.+++++ +++++.+.. .+.+.+++.-+|+.. .|.++.. ++.
T Consensus 2 ~~ll~~Lv~i~S~s~~~~~~~~e~~~~~~l~~~l~~~G--~~~~~~~~~----~~~~nv~~~~~g~~~~~~~lll~~H~D 75 (426)
T PRK07906 2 VDLCSELIRIDTTNTGDGTGKGEREAAEYVAEKLAEVG--LEPTYLESA----PGRANVVARLPGADPSRPALLVHGHLD 75 (426)
T ss_pred hHHHHHHhcccccCCCCCCCchHHHHHHHHHHHHHhCC--CCeEEeecC----CCceEEEEEEeCCCCCCCcEEEEcccc
Confidence 35677888888743 123356777778888775 888876531 244566666556532 2333322 221
Q ss_pred --CCCCC--CCce----E---EEEecceeecCCCCCCCCCCcccccccccccchHHHHHHHHHHHHhcC--CCceEEEEE
Q 007947 338 --PPGGS--AKIK----L---ALVGKGLTFDSGGYNIKTGPGCLIENMKYDMGGAAAVLGAAKAIGQIK--PPGVEVHFI 404 (583)
Q Consensus 338 --g~~~~--~~~~----i---~LVGKGiTFDsGG~slKp~~~~~M~~MK~DM~GAAaVlga~~aia~lk--lp~vnV~~i 404 (583)
|.+.. ...| + -|-|+|. .+|| +|.|+.+.+++++.+.+ ++ .+|+.+
T Consensus 76 tVp~~~~~W~~~Pf~~~~~dg~iyGrG~-----------------~D~K---g~~a~~l~a~~~l~~~~~~~~-~~i~~~ 134 (426)
T PRK07906 76 VVPAEAADWSVHPFSGEIRDGYVWGRGA-----------------VDMK---DMDAMMLAVVRHLARTGRRPP-RDLVFA 134 (426)
T ss_pred cCCCCcccCccCCCCceeeCCEEEecCc-----------------cccc---hHHHHHHHHHHHHHHcCCCCC-ccEEEE
Confidence 11100 0001 1 2344442 1344 58899999999998775 44 577777
Q ss_pred Eeeccc
Q 007947 405 VAACEN 410 (583)
Q Consensus 405 i~~~EN 410 (583)
+-.-|=
T Consensus 135 ~~~dEE 140 (426)
T PRK07906 135 FVADEE 140 (426)
T ss_pred EecCcc
Confidence 655543
No 30
>PRK07907 hypothetical protein; Provisional
Probab=61.67 E-value=1e+02 Score=33.98 Aligned_cols=127 Identities=21% Similarity=0.235 Sum_probs=68.3
Q ss_pred HHHHHHHHHHhhcCCCCCCC------hHHHHHHHHHHhhhcCCce-EEEEeCHHHHHHcCCCchhhhcccCCCCCeEEEE
Q 007947 262 VSSAVIFGRELVNSPANVLT------PAVLAEEASKVASMYSDVL-SATILDIEKCKELKMGSYLGVAAASANLPHFIHL 334 (583)
Q Consensus 262 ~a~~~~~aRdL~n~P~N~lt------P~~~A~~a~~~~~~~~~~~-~v~V~d~~~l~~~gmg~llaV~~GS~~pPrli~l 334 (583)
.-+.+.+.++|++.|+---. -..+++...+.+++++ + ++++++ ..+.+.+++.-.|+...|.++..
T Consensus 17 ~~~~~~ll~~LV~ipS~s~~~~~~~~~~~~~~~l~~~l~~~g--~~~~~~~~-----~~~~~nl~a~~~~~~~~~~lll~ 89 (449)
T PRK07907 17 LPRVRADLEELVRIPSVAADPFRREEVARSAEWVADLLREAG--FDDVRVVS-----ADGAPAVIGTRPAPPGAPTVLLY 89 (449)
T ss_pred HHHHHHHHHHHhcCCCCCCCccchhhHHHHHHHHHHHHHHcC--CceEEEEe-----cCCCCEEEEEecCCCCCCEEEEE
Confidence 44678999999999985432 1357777888888775 6 788876 12445555554443323444332
Q ss_pred EE-c--CCCCCC---CceEEEEecceeecCCCCCCCCCCcccccccccccchHHHHHHHHHHHHhcCCCceEEEEEEeec
Q 007947 335 CY-K--PPGGSA---KIKLALVGKGLTFDSGGYNIKTGPGCLIENMKYDMGGAAAVLGAAKAIGQIKPPGVEVHFIVAAC 408 (583)
Q Consensus 335 ~Y-~--g~~~~~---~~~i~LVGKGiTFDsGG~slKp~~~~~M~~MK~DM~GAAaVlga~~aia~lklp~vnV~~ii~~~ 408 (583)
-+ . |.+... ..|.-.+=| +| -|.- . +-.+|| +|.|+.+-+++++ ..++| ++|..++-.-
T Consensus 90 gH~DvVp~~~~~~W~~~Pf~~~~~------~g-~lyG-r--G~~D~K---g~~aa~l~a~~~l-~~~~~-~~i~~~~~~d 154 (449)
T PRK07907 90 AHHDVQPPGDPDAWDSPPFELTER------DG-RLYG-R--GAADDK---GGIAMHLAALRAL-GGDLP-VGVTVFVEGE 154 (449)
T ss_pred cccCCCCCCCccccCCCCceeEEE------CC-EEEE-C--CccCCc---HHHHHHHHHHHHh-ccCCC-CcEEEEEEcC
Confidence 22 1 111110 112211111 01 1221 1 112233 5677777777777 55667 8888887667
Q ss_pred cc
Q 007947 409 EN 410 (583)
Q Consensus 409 EN 410 (583)
|-
T Consensus 155 EE 156 (449)
T PRK07907 155 EE 156 (449)
T ss_pred cc
Confidence 73
No 31
>PRK08596 acetylornithine deacetylase; Validated
Probab=61.60 E-value=1e+02 Score=33.55 Aligned_cols=121 Identities=17% Similarity=0.142 Sum_probs=70.4
Q ss_pred HHHHHHHHHhhcCCCCCCC---hHHHHHHHHHHhhhcCCceEEEEeCHHHHHHcCCCchhhhcccCCC--CCeEEEEEE-
Q 007947 263 SSAVIFGRELVNSPANVLT---PAVLAEEASKVASMYSDVLSATILDIEKCKELKMGSYLGVAAASAN--LPHFIHLCY- 336 (583)
Q Consensus 263 a~~~~~aRdL~n~P~N~lt---P~~~A~~a~~~~~~~~~~~~v~V~d~~~l~~~gmg~llaV~~GS~~--pPrli~l~Y- 336 (583)
.+.+.+-|+|++.|+.--. -..+++...+.++..+ +++++.+.. .+.+.+++.-+|+.. +|+++...+
T Consensus 13 ~~~~~~l~~Lv~i~S~s~~~~~e~~~a~~l~~~l~~~G--~~~~~~~~~----~~~~nvia~~~g~~~~~~~~lll~~H~ 86 (421)
T PRK08596 13 DELLELLKTLVRFETPAPPARNTNEAQEFIAEFLRKLG--FSVDKWDVY----PNDPNVVGVKKGTESDAYKSLIINGHM 86 (421)
T ss_pred HHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHCC--CeEEEEEcc----CCCceEEEEecCCCCCCCcEEEEeccc
Confidence 4677899999998885432 2345777778787775 888876531 133556665555432 344433222
Q ss_pred c--CCCCCC---CceE-------EEEecceeecCCCCCCCCCCcccccccccccchHHHHHHHHHHHHhcC--CCceEEE
Q 007947 337 K--PPGGSA---KIKL-------ALVGKGLTFDSGGYNIKTGPGCLIENMKYDMGGAAAVLGAAKAIGQIK--PPGVEVH 402 (583)
Q Consensus 337 ~--g~~~~~---~~~i-------~LVGKGiTFDsGG~slKp~~~~~M~~MK~DM~GAAaVlga~~aia~lk--lp~vnV~ 402 (583)
. |.+... ..|. -|-|+|. .+| .+|-|+++.+++++.+.+ ++ .+|+
T Consensus 87 DtVp~~~~~~W~~~Pf~~~~~~g~lyGrG~-----------------~D~---Kgg~a~~l~a~~~l~~~~~~~~-~~v~ 145 (421)
T PRK08596 87 DVAEVSADEAWETNPFEPTIKDGWLYGRGA-----------------ADM---KGGLAGALFAIQLLHEAGIELP-GDLI 145 (421)
T ss_pred cccCCCCccccccCCCCcEEECCEEEeccc-----------------ccc---chHHHHHHHHHHHHHHcCCCCC-CcEE
Confidence 1 111100 0011 1333331 112 477899999999998876 45 6888
Q ss_pred EEEeeccc
Q 007947 403 FIVAACEN 410 (583)
Q Consensus 403 ~ii~~~EN 410 (583)
.++-.-|.
T Consensus 146 ~~~~~dEE 153 (421)
T PRK08596 146 FQSVIGEE 153 (421)
T ss_pred EEEEeccc
Confidence 88777766
No 32
>TIGR01902 dapE-lys-deAc N-acetyl-ornithine/N-acetyl-lysine deacetylase. This clade of mainly archaeal and related bacterial species contains two characterized enzymes, an deacetylase with specificity for both N-acetyl-ornithine and N-acetyl-lysine from Thermus which is found within a lysine biosynthesis operon, and a fusion protein with acetyl-glutamate kinase (an enzyme of ornithine biosynthesis) from Lactobacillus. It is possible that all of the sequences within this clade have dual specificity, or that a mix of specificities have evolved within this clade.
Probab=58.08 E-value=1.3e+02 Score=31.57 Aligned_cols=33 Identities=12% Similarity=0.030 Sum_probs=26.4
Q ss_pred HHHHhhcCCCCCCChHHHHHHHHHHhhhcCCceEE
Q 007947 268 FGRELVNSPANVLTPAVLAEEASKVASMYSDVLSA 302 (583)
Q Consensus 268 ~aRdL~n~P~N~ltP~~~A~~a~~~~~~~~~~~~v 302 (583)
+.++|++.|+-.-.-...++..++..++++ +++
T Consensus 2 ~l~~lv~i~s~s~~e~~~~~~l~~~l~~~g--~~~ 34 (336)
T TIGR01902 2 LLKDLLEIYSPSGKEANAAKFLEEISKDLG--LKL 34 (336)
T ss_pred hHHHHhcCCCCCcchHHHHHHHHHHHHHcC--CEE
Confidence 467889988866667788888888888875 777
No 33
>PLN02280 IAA-amino acid hydrolase
Probab=57.93 E-value=1.6e+02 Score=33.28 Aligned_cols=127 Identities=13% Similarity=0.083 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhhhcCCceEEEEeCHHHHHHcCCCchhhhcccCCCCCeEEEEEEcC
Q 007947 259 AEHVSSAVIFGRELVNSPANVLTPAVLAEEASKVASMYSDVLSATILDIEKCKELKMGSYLGVAAASANLPHFIHLCYKP 338 (583)
Q Consensus 259 ~~~~a~~~~~aRdL~n~P~N~ltP~~~A~~a~~~~~~~~~~~~v~V~d~~~l~~~gmg~llaV~~GS~~pPrli~l~Y~g 338 (583)
...+..-+.+.|+|...|.--..=...++...+..++++ +++++.+ +-.++.++- |...+|.++ + ++
T Consensus 93 ~~~~~~l~~l~r~lh~~PEls~~E~~t~~~i~~~L~~~G--~~~~~~~-------~~~~vva~~-g~~~~~~I~-l--~g 159 (478)
T PLN02280 93 PDTVAWLKSVRRKIHENPELAFEEYKTSELVRSELDRMG--IMYRYPL-------AKTGIRAWI-GTGGPPFVA-V--RA 159 (478)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHCC--CeEEecC-------CCCEEEEEE-CCCCCCEEE-E--EE
Confidence 445667778999999999533334566777777777775 8877632 123444443 332334322 2 22
Q ss_pred CCCCCCceEEEEecceeecCCCCCCCCCCcccccccccccchHHHHHHHHHHHHhcC--CCceEEEEEEeeccc
Q 007947 339 PGGSAKIKLALVGKGLTFDSGGYNIKTGPGCLIENMKYDMGGAAAVLGAAKAIGQIK--PPGVEVHFIVAACEN 410 (583)
Q Consensus 339 ~~~~~~~~i~LVGKGiTFDsGG~slKp~~~~~M~~MK~DM~GAAaVlga~~aia~lk--lp~vnV~~ii~~~EN 410 (583)
. -+.-|+. -.-+.+||+ ++.+ -|+.-=.|| +.|+++++++++.+.+ ++ -+|+.+.--.|-
T Consensus 160 h--~DaVP~~-e~~~w~~~p----~~~G---~~h~cGhd~-~~A~~l~a~~~L~~~~~~~~-g~V~~if~pdEE 221 (478)
T PLN02280 160 D--MDALPIQ-EAVEWEHKS----KVAG---KMHACGHDA-HVAMLLGAAKILKSREHLLK-GTVVLLFQPAEE 221 (478)
T ss_pred e--cCCCccc-CCCCCCCCC----CCCC---eEEeCCCcH-HHHHHHHHHHHHHhccccCC-ceEEEEeccccc
Confidence 0 0000100 011245565 3332 344333366 8999999999998765 55 477777655554
No 34
>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]
Probab=56.00 E-value=44 Score=36.92 Aligned_cols=109 Identities=30% Similarity=0.392 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHhcCCCceEEEEEEeecccCCCCCCCCCCcEEEccCCcEEEeecCCc----------------------
Q 007947 381 AAAVLGAAKAIGQIKPPGVEVHFIVAACENMISGTGMRPGDIITAANGKTIEVNNTDA---------------------- 438 (583)
Q Consensus 381 AAaVlga~~aia~lklp~vnV~~ii~~~ENm~sg~A~rPGDVvts~~GkTVEV~NTDA---------------------- 438 (583)
++||+-+..++++ + -+ .|+..-|+.+ |.+++-.|+++..+++=+||.+|--
T Consensus 93 ~aAVll~~~al~~---~-~E--vVis~g~lV~-gg~~~v~d~~~~aG~~l~EvG~tn~t~~~d~~~AIne~ta~llkV~s 165 (395)
T COG1921 93 AAAVLLTLNALAE---G-KE--VVVSRGELVE-GGAFRVPDIIRLAGAKLVEVGTTNRTHLKDYELAINENTALLLKVHS 165 (395)
T ss_pred HHHHHHHHhhhcc---C-Ce--EEEEcccccc-CCCCChhHHHHHcCCEEEEecccCcCCHHHHHHHhccCCeeEEEEee
Confidence 5777777777776 2 23 3456677777 9999999999999999999976632
Q ss_pred c-----CceehhhhhhHHHhcCCCeEEEecc---------hhHHHHH-----------hhCCCeEEEeeCCHHHHHHHHH
Q 007947 439 E-----GRLTLADALIYACNQGVDKVIDLAT---------LTGACVV-----------ALGPSVAGAFTPSDDLANEVMA 493 (583)
Q Consensus 439 E-----GRLvLADaL~Ya~~~~p~~iIDiAT---------LTGA~~v-----------ALG~~~agvfsn~~~l~~~l~~ 493 (583)
+ |-|-+.|...-|++++.-.|+|.|- |..++.. .||.-.+|++.-..+|..+++.
T Consensus 166 ~~~~f~~~l~~~~l~~ia~~~~lpvivD~aSg~~v~~e~~l~~~la~GaDLV~~SgdKllgGPqaGii~GkKelI~~lq~ 245 (395)
T COG1921 166 SNYGFTGMLSEEELVEIAHEKGLPVIVDLASGALVDKEPDLREALALGADLVSFSGDKLLGGPQAGIIVGKKELIEKLQS 245 (395)
T ss_pred ccccccccccHHHHHHHHHHcCCCEEEecCCccccccccchhHHHhcCCCEEEEecchhcCCCccceEechHHHHHHHHh
Confidence 2 6788889988899999999999998 5555444 5666678888888888877776
Q ss_pred HHH
Q 007947 494 ASQ 496 (583)
Q Consensus 494 ag~ 496 (583)
.+-
T Consensus 246 ~~l 248 (395)
T COG1921 246 HPL 248 (395)
T ss_pred hhh
Confidence 543
No 35
>PRK07318 dipeptidase PepV; Reviewed
Probab=55.28 E-value=2e+02 Score=31.99 Aligned_cols=116 Identities=19% Similarity=0.156 Sum_probs=65.8
Q ss_pred HHHHHHHHHhhcCCCCCCC------------hHHHHHHHHHHhhhcCCceEEEEeCHHHHHHcCCCchhhhcccCCCCCe
Q 007947 263 SSAVIFGRELVNSPANVLT------------PAVLAEEASKVASMYSDVLSATILDIEKCKELKMGSYLGVAAASANLPH 330 (583)
Q Consensus 263 a~~~~~aRdL~n~P~N~lt------------P~~~A~~a~~~~~~~~~~~~v~V~d~~~l~~~gmg~llaV~~GS~~pPr 330 (583)
.+.+.+.++|++.|+-.-. -...++...+.+++++ +++++++. .-+. +..|+ .+|+
T Consensus 14 ~~~~~~l~~lv~i~S~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~G--~~~~~~~n-------~~~~--~~~~~-~~~~ 81 (466)
T PRK07318 14 DDLIEDLQELLRINSVRDDSKAKEGAPFGPGPVKALEKFLEIAERDG--FKTKNVDN-------YAGH--IEYGE-GEEV 81 (466)
T ss_pred HHHHHHHHHHhccCcccCCcccccCCCCCccHHHHHHHHHHHHHHCC--CEEEEecC-------ccce--EEECC-CCCE
Confidence 4567888999999985432 2357888888888775 89887751 1111 11122 3355
Q ss_pred EEEEEEc---CCCCC-CCceE-------EEEecceeecCCCCCCCCCCcccccccccccchHHHHHHHHHHHHhcCCC-c
Q 007947 331 FIHLCYK---PPGGS-AKIKL-------ALVGKGLTFDSGGYNIKTGPGCLIENMKYDMGGAAAVLGAAKAIGQIKPP-G 398 (583)
Q Consensus 331 li~l~Y~---g~~~~-~~~~i-------~LVGKGiTFDsGG~slKp~~~~~M~~MK~DM~GAAaVlga~~aia~lklp-~ 398 (583)
++...+- |.+.. ...|. -|-|+|. .+|| +|.|+++.+|+++.+.+.+ +
T Consensus 82 l~l~gH~DvVp~~~~W~~~Pf~~~~~dg~lyGRG~-----------------~DmK---gg~aa~l~Al~~l~~~g~~~~ 141 (466)
T PRK07318 82 LGILGHLDVVPAGDGWDTDPYEPVIKDGKIYARGT-----------------SDDK---GPTMAAYYALKIIKELGLPLS 141 (466)
T ss_pred EEEEEecCCCCCCCCCCCCCcceEEECCEEEEccc-----------------ccCc---HHHHHHHHHHHHHHHcCCCCC
Confidence 5544432 11110 01122 2334442 1243 6889999999999887642 2
Q ss_pred eEEEEEEeeccc
Q 007947 399 VEVHFIVAACEN 410 (583)
Q Consensus 399 vnV~~ii~~~EN 410 (583)
-+|..++-.-|=
T Consensus 142 ~~i~l~~~~DEE 153 (466)
T PRK07318 142 KKVRFIVGTDEE 153 (466)
T ss_pred ccEEEEEEcccc
Confidence 467666655544
No 36
>cd02905 Macro_GDAP2_like Macro domain, GDAP2_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family contains proteins similar to human GDAP2, the ganglioside induced differentiation associated protein 2, whose gene is expressed at a higher level in differentiated Neuro2a cells compared with non-differentiated cells. GDAP2 contains an N-terminal macro domain and a C-terminal
Probab=53.79 E-value=1.9e+02 Score=27.05 Aligned_cols=106 Identities=17% Similarity=0.140 Sum_probs=62.7
Q ss_pred eecCCcccccccEEEEEEecCCCCCCCCcccchhHHHHHHHHhhHHHHHHHhcCCCCCCCCcEEEEecCCCCccEEEEEe
Q 007947 83 AKEVDVVEWKGDILAVGVTEKDMGKDDNSKFQNSILKKLDAQLGGLLSEASSEEDFTGKAGQSTVIRLPGIGSKRVGLIG 162 (583)
Q Consensus 83 ~~~~~~~~~~~D~LVVgV~e~~~~~~~~s~~~~~~~~~ld~~l~g~Ls~~~~~~~f~Gk~Ge~~~l~~~~~~~~rvllVG 162 (583)
+...|..+++.|++|-+..+.-.. .......+-+..+..|.+-.+.. -.-+.|+..+...-+.+.+.|+=+
T Consensus 5 l~~GdIt~~~vDaIVNaan~~l~~-------~ggv~~aI~~aaG~~l~~e~~~~-~~~~~G~~~~T~~~~L~~k~VIH~- 75 (140)
T cd02905 5 LWEGDICNLNVDAIVNSTNETLTD-------KNPISDKIFARAGSELREEIQTL-GGCRTGEAKLTKGYNLPARFIIHT- 75 (140)
T ss_pred EEeCccCcccCCEEEeCCccccCC-------CCcHHHHHHHHhCHHHHHHHHHh-CCCCCCcEEEecCCCCCccEEEEe-
Confidence 356778889999999876665311 12334556555666665444332 125778876654445666665433
Q ss_pred cCCC--C----CChHHHHHHHHHHHHHHHHcccCcEEEEec
Q 007947 163 LGQS--A----SRAGDFRSLGESVAAAAKAAQASNVAVVLA 197 (583)
Q Consensus 163 LGk~--~----~~~~~~r~~~~a~a~~~k~~~~~~v~i~l~ 197 (583)
+|.. . ...+.+++.-....+.+.+.+.+++++-.-
T Consensus 76 vgP~~~~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIAfPai 116 (140)
T cd02905 76 VGPKYNVKYRTAAENALYSCYRNVLQLAKELGLESIALCVI 116 (140)
T ss_pred cCCccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCEEEECCc
Confidence 2332 1 123456666666777788889998876443
No 37
>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=53.28 E-value=9.1 Score=31.29 Aligned_cols=26 Identities=19% Similarity=0.362 Sum_probs=19.9
Q ss_pred ecccCCCCCC-CCCCcEEEccCCcEEE
Q 007947 407 ACENMISGTG-MRPGDIITAANGKTIE 432 (583)
Q Consensus 407 ~~ENm~sg~A-~rPGDVvts~~GkTVE 432 (583)
.-+|.|...+ ++|||+|++.||+.|.
T Consensus 19 V~~~s~a~~aGl~~GD~I~~Ing~~v~ 45 (80)
T cd00990 19 VRDDSPADKAGLVAGDELVAVNGWRVD 45 (80)
T ss_pred ECCCChHHHhCCCCCCEEEEECCEEhH
Confidence 3566665543 9999999999999763
No 38
>cd03330 Macro_2 Macro domain, Unknown family 2. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins containing a stand-alone macro domain.
Probab=52.37 E-value=1.8e+02 Score=26.38 Aligned_cols=104 Identities=11% Similarity=0.084 Sum_probs=58.8
Q ss_pred eecCCcccccccEEEEEEecCCCCCCCCcccchhHHHHHHHHhhHHHHHHHhcCCCCCCCCcEEEEecCCCCccEEEEEe
Q 007947 83 AKEVDVVEWKGDILAVGVTEKDMGKDDNSKFQNSILKKLDAQLGGLLSEASSEEDFTGKAGQSTVIRLPGIGSKRVGLIG 162 (583)
Q Consensus 83 ~~~~~~~~~~~D~LVVgV~e~~~~~~~~s~~~~~~~~~ld~~l~g~Ls~~~~~~~f~Gk~Ge~~~l~~~~~~~~rvllVG 162 (583)
....|..++++|++|=+....... .......+.+..+..+.+-..... .-+.|+..+....+.+.++|+-+
T Consensus 4 i~~GdI~~~~~DaIVn~~N~~~~~-------g~Gva~ai~~~~G~~~~~~~~~~~-~~~~G~~~~t~~~~l~~k~Iih~- 74 (133)
T cd03330 4 VVQGDITKVDADAIVNAANSRLRM-------GGGVAGAIKRAGGSVIEREAVRKA-PIPVGEAVITGAGDLPARYVIHA- 74 (133)
T ss_pred EEEcccccccCCEEEeCCCCCCCC-------CCcHHHHHHHHhCHHHHHHHHHcC-CCCCCeEEEEeCCCCCCCEEEEe-
Confidence 356677788999998877665422 123445566655555444333221 23577765543334555655433
Q ss_pred cCCC---CCChHHHHHHHHHHHHHHHHcccCcEEEE
Q 007947 163 LGQS---ASRAGDFRSLGESVAAAAKAAQASNVAVV 195 (583)
Q Consensus 163 LGk~---~~~~~~~r~~~~a~a~~~k~~~~~~v~i~ 195 (583)
.+.. ..+++.+++....+...+.+.+.+++++-
T Consensus 75 ~~~~~~~~~~~~~l~~~~~~~l~~a~~~~~~sIA~P 110 (133)
T cd03330 75 ATMEEPGRSSEESVRKATRAALALADELGIESVAFP 110 (133)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCEEEEC
Confidence 2222 13456677666666676777777776553
No 39
>PRK00466 acetyl-lysine deacetylase; Validated
Probab=52.29 E-value=2.2e+02 Score=29.96 Aligned_cols=41 Identities=15% Similarity=0.024 Sum_probs=34.1
Q ss_pred HHHHHHHHhhcCCCCCCChHHHHHHHHHHhhhcCCceEEEEeC
Q 007947 264 SAVIFGRELVNSPANVLTPAVLAEEASKVASMYSDVLSATILD 306 (583)
Q Consensus 264 ~~~~~aRdL~n~P~N~ltP~~~A~~a~~~~~~~~~~~~v~V~d 306 (583)
+.+.+.++|++.|+.--.....++...+.+++.+ +++++.+
T Consensus 11 ~~~~~l~~lv~i~s~s~~e~~~~~~l~~~l~~~g--~~~~~~~ 51 (346)
T PRK00466 11 KAKELLLDLLSIYTPSGNETNATKFFEKISNELN--LKLEILP 51 (346)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcC--CeEEEec
Confidence 5677889999999977778889999999888875 8888765
No 40
>TIGR01880 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase. This model represents a family of eukaryotic N-acyl-L-amino-acid amidohydrolases active on fatty acid and acetyl amides of L-amino acids.
Probab=51.62 E-value=2.5e+02 Score=30.14 Aligned_cols=128 Identities=15% Similarity=0.017 Sum_probs=64.6
Q ss_pred HHHHHHHHhhcCCCCCCC--hHHHHHHHHHHhhhcCCceEEEEeCHHHHHHcCCCchhhhcccCC-C-CCeEEEEEEc--
Q 007947 264 SAVIFGRELVNSPANVLT--PAVLAEEASKVASMYSDVLSATILDIEKCKELKMGSYLGVAAASA-N-LPHFIHLCYK-- 337 (583)
Q Consensus 264 ~~~~~aRdL~n~P~N~lt--P~~~A~~a~~~~~~~~~~~~v~V~d~~~l~~~gmg~llaV~~GS~-~-pPrli~l~Y~-- 337 (583)
+.+.+-++|++.|+-.=. -...++..++.++.++ ++++.++.. .|-..+++--+|+. . |+.++.-++.
T Consensus 10 ~~~~~l~~lv~ipS~~~~~~~~~~~~~l~~~l~~~G--~~~~~~~~~----~g~~~l~~~~~g~~~~~~~i~l~~H~DvV 83 (400)
T TIGR01880 10 IAVTRFREYLRINTVQPNPDYAACVDFLIKQADELG--LARKTIEFV----PGKPVVVLTWPGSNPELPSILLNSHTDVV 83 (400)
T ss_pred HHHHHHHHHhccCccCCCccHHHHHHHHHHHHHhCC--CceeEEEec----CCceeEEEEEecCCCCCCeEEEEcccccC
Confidence 345788889988875322 2467888888888886 887766532 12222333223432 1 2333322222
Q ss_pred CCCCC--CCceEEEEecceeecCCCCCCCCCCcccccccccccchHHHHHHHHHHHHhcC--CCceEEEEEEeeccc
Q 007947 338 PPGGS--AKIKLALVGKGLTFDSGGYNIKTGPGCLIENMKYDMGGAAAVLGAAKAIGQIK--PPGVEVHFIVAACEN 410 (583)
Q Consensus 338 g~~~~--~~~~i~LVGKGiTFDsGG~slKp~~~~~M~~MK~DM~GAAaVlga~~aia~lk--lp~vnV~~ii~~~EN 410 (583)
|.+.. ...|... +.+-+|. |- +. +..+|| +|.|+++.+++++.+.+ ++ -+|+.+.-.-|=
T Consensus 84 p~~~~~W~~~Pf~~-----~~~~dg~-iy-Gr--G~~D~K---~~~aa~l~a~~~l~~~~~~~~-~~v~l~~~~dEE 147 (400)
T TIGR01880 84 PVFREHWTHPPFSA-----FKDEDGN-IY-AR--GAQDMK---CVGVQYLEAVRNLKASGFKFK-RTIHISFVPDEE 147 (400)
T ss_pred CCCcccCccCCccc-----eecCCCe-EE-Ec--cccccc---HHHHHHHHHHHHHHHcCCCCC-ceEEEEEeCCcc
Confidence 11100 0111110 0001111 11 11 223354 57889999999998876 34 577777665553
No 41
>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=51.50 E-value=7.7 Score=31.50 Aligned_cols=25 Identities=32% Similarity=0.539 Sum_probs=19.6
Q ss_pred cccCCCCC-CCCCCcEEEccCCcEEE
Q 007947 408 CENMISGT-GMRPGDIITAANGKTIE 432 (583)
Q Consensus 408 ~ENm~sg~-A~rPGDVvts~~GkTVE 432 (583)
.+|.|... ..+|||+|++.||+.|.
T Consensus 20 ~~~s~a~~~gl~~GD~I~~ing~~i~ 45 (79)
T cd00989 20 VPGSPAAKAGLKAGDRILAINGQKIK 45 (79)
T ss_pred CCCCHHHHcCCCCCCEEEEECCEECC
Confidence 56666553 49999999999999765
No 42
>TIGR03526 selenium_YgeY putative selenium metabolism hydrolase. SelD, selenophosphate synthase, is the selenium donor protein for both selenocysteine and selenouridine biosynthesis systems, but it occurs also in a few prokaryotes that have neither of those pathways. The method of partial phylogenetic profiling, starting from such orphan-selD genomes, identifies this protein as one of those most strongly correlated to SelD occurrence. Its distribution is also well correlated with that of family TIGR03309, a putative accessory protein of labile selenium (non-selenocysteine) enzyme maturation. This family includes the uncharacterized YgeY of Escherichia coli, and belongs to a larger family of metalloenzymes in which some are known peptidases, others enzymes of different types.
Probab=49.86 E-value=3.2e+02 Score=29.43 Aligned_cols=117 Identities=18% Similarity=0.176 Sum_probs=65.7
Q ss_pred HHHHHHHHHhhcCCCCCCChHHHHHHHHHHhhhcCCceEEEEeCHHHHHHcCCCchhhhcccCCCCCeEEEE-EEc--CC
Q 007947 263 SSAVIFGRELVNSPANVLTPAVLAEEASKVASMYSDVLSATILDIEKCKELKMGSYLGVAAASANLPHFIHL-CYK--PP 339 (583)
Q Consensus 263 a~~~~~aRdL~n~P~N~ltP~~~A~~a~~~~~~~~~~~~v~V~d~~~l~~~gmg~llaV~~GS~~pPrli~l-~Y~--g~ 339 (583)
-+-+.+.++|++.|+-.-.-...++...+..++++ +++...++ ++.++++- |+ .+|.++.. +|. |.
T Consensus 13 ~~~~~~l~~Lv~ips~s~~e~~~~~~l~~~l~~~g--~~~~~~~~-------~~~v~~~~-g~-~~~~l~l~~H~DtVp~ 81 (395)
T TIGR03526 13 GDMIRFLRDLVAIPSESGDEGRVALRIKQEMEKLG--FDKVEIDP-------MGNVLGYI-GH-GPKLIAMDAHIDTVGI 81 (395)
T ss_pred HHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHcC--CceEEEcC-------CCcEEEEe-CC-CCCEEEEEeeccccCC
Confidence 46689999999999977666677788888888775 76433332 34455543 43 23444322 222 21
Q ss_pred CCCC---CceE-------EEEecceeecCCCCCCCCCCcccccccccccchHHHHHHHHHHHHhcCCC-ceEEEEEEeec
Q 007947 340 GGSA---KIKL-------ALVGKGLTFDSGGYNIKTGPGCLIENMKYDMGGAAAVLGAAKAIGQIKPP-GVEVHFIVAAC 408 (583)
Q Consensus 340 ~~~~---~~~i-------~LVGKGiTFDsGG~slKp~~~~~M~~MK~DM~GAAaVlga~~aia~lklp-~vnV~~ii~~~ 408 (583)
+... ..|. -|-|.|. .+|| +|.|+.+.+++++.+.+.+ +.+|+.+...-
T Consensus 82 ~~~~~W~~~Pf~~~~~~g~lyGrG~-----------------~D~K---g~~aa~l~a~~~l~~~~~~~~~~v~~~~~~d 141 (395)
T TIGR03526 82 GDMDQWQFDPYEGYEDEEIIYGRGA-----------------SDQE---GGIASMVYAGKIIKDLGLLDDYTLLVTGTVQ 141 (395)
T ss_pred CCcccccCCCCceEEECCEEEecCc-----------------cccc---hhHHHHHHHHHHHHHcCCCCCceEEEEEecc
Confidence 1110 1121 1333432 2244 6789999999999887642 24554433333
Q ss_pred cc
Q 007947 409 EN 410 (583)
Q Consensus 409 EN 410 (583)
|-
T Consensus 142 EE 143 (395)
T TIGR03526 142 EE 143 (395)
T ss_pred cc
Confidence 44
No 43
>TIGR01892 AcOrn-deacetyl acetylornithine deacetylase (ArgE). This model represents a clade of acetylornithine deacetylases from proteobacteria. This enzyme is the final step of the "acetylated" ornithine biosynthesis pathway. The enzyme is closely related to dapE, succinyl-diaminopimelate desuccinylase, and outside of this clade annotation is very inaccurate as to which function should be ascribed to genes.
Probab=49.84 E-value=1e+02 Score=32.38 Aligned_cols=37 Identities=16% Similarity=0.135 Sum_probs=27.2
Q ss_pred HHHHhhcCCCCCCCh-HHHHHHHHHHhhhcCCceEEEEeC
Q 007947 268 FGRELVNSPANVLTP-AVLAEEASKVASMYSDVLSATILD 306 (583)
Q Consensus 268 ~aRdL~n~P~N~ltP-~~~A~~a~~~~~~~~~~~~v~V~d 306 (583)
+.++|+..|+-.-.. ..+++...+.+++++ +++++.+
T Consensus 2 ~l~~lv~i~S~s~~~~~~~~~~l~~~l~~~G--~~~~~~~ 39 (364)
T TIGR01892 2 ILTKLVAFDSTSFRPNVDLIDWAQAYLEALG--FSVEVQP 39 (364)
T ss_pred hHHHhhCcCCcCCccHHHHHHHHHHHHHHcC--CeEEEEe
Confidence 457788888754334 478888888888885 8887765
No 44
>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos
Probab=47.71 E-value=13 Score=29.52 Aligned_cols=26 Identities=27% Similarity=0.497 Sum_probs=20.6
Q ss_pred ecccCCCCC-CCCCCcEEEccCCcEEE
Q 007947 407 ACENMISGT-GMRPGDIITAANGKTIE 432 (583)
Q Consensus 407 ~~ENm~sg~-A~rPGDVvts~~GkTVE 432 (583)
..+|.|... ..+|||+|.+.||+.|.
T Consensus 20 v~~~s~a~~~gl~~GD~I~~Ing~~v~ 46 (70)
T cd00136 20 VEPGSPAERAGLQAGDVILAVNGTDVK 46 (70)
T ss_pred eCCCCHHHHcCCCCCCEEEEECCEECC
Confidence 356777665 59999999999999654
No 45
>PF09926 DUF2158: Uncharacterized small protein (DUF2158); InterPro: IPR019226 This entry represents a family of predominantly prokaryotic proteins with no known function.
Probab=47.38 E-value=19 Score=28.61 Aligned_cols=33 Identities=21% Similarity=0.398 Sum_probs=23.8
Q ss_pred CCCCcEEEccCC---cEEE-eecC-CccCceehhhhhhHH
Q 007947 417 MRPGDIITAANG---KTIE-VNNT-DAEGRLTLADALIYA 451 (583)
Q Consensus 417 ~rPGDVvts~~G---kTVE-V~NT-DAEGRLvLADaL~Ya 451 (583)
|+|||||+-.+| .||+ |.+. ++.++-+.| .+|.
T Consensus 1 f~~GDvV~LKSGGp~MTV~~v~~~~~~~~~~v~C--~WFd 38 (53)
T PF09926_consen 1 FKIGDVVQLKSGGPRMTVTEVGPNAGASGGWVEC--QWFD 38 (53)
T ss_pred CCCCCEEEEccCCCCeEEEEccccccCCCCeEEE--EeCC
Confidence 689999999998 4666 5555 666777766 4444
No 46
>PF10447 EXOSC1: Exosome component EXOSC1/CSL4; InterPro: IPR019495 The exosome mediates degradation of unstable mRNAs that contain AU-rich elements (AREs) within their 3' untranslated regions []. The proteins in this entry are components of the exosome 3'->5' exoribonuclease complex. They do not have exonuclease activity, but are required for the 3'-processing of the 7S pre-RNA to the mature 5.8S rRNA and for mRNA decay [, ].; PDB: 2NN6_I.
Probab=46.89 E-value=9.2 Score=33.02 Aligned_cols=13 Identities=46% Similarity=0.716 Sum_probs=8.8
Q ss_pred CCCCCCCcEEEcc
Q 007947 414 GTGMRPGDIITAA 426 (583)
Q Consensus 414 g~A~rPGDVvts~ 426 (583)
..+|||||||++.
T Consensus 66 ~~~FrpGDIVrA~ 78 (82)
T PF10447_consen 66 YDCFRPGDIVRAR 78 (82)
T ss_dssp GGT--SSSEEEEE
T ss_pred HhccCCCCEEEEE
Confidence 5789999999873
No 47
>PRK09133 hypothetical protein; Provisional
Probab=46.24 E-value=90 Score=34.63 Aligned_cols=120 Identities=12% Similarity=0.107 Sum_probs=68.7
Q ss_pred HHHHHHHHhhcCCCCC--CChHHHHHHHHHHhhhcCCceEEE---EeCHHHHHHcCCCchhhhcccCCC-CCeEEEEEEc
Q 007947 264 SAVIFGRELVNSPANV--LTPAVLAEEASKVASMYSDVLSAT---ILDIEKCKELKMGSYLGVAAASAN-LPHFIHLCYK 337 (583)
Q Consensus 264 ~~~~~aRdL~n~P~N~--ltP~~~A~~a~~~~~~~~~~~~v~---V~d~~~l~~~gmg~llaV~~GS~~-pPrli~l~Y~ 337 (583)
+.+.+-++|++.|+-. -.-...++...+.+++++ ++++ +.+. .-+.+.+++.-+|+.. |+.++.-+|.
T Consensus 38 ~~~~~l~~Lv~i~S~s~~~~e~~~~~~l~~~l~~~G--~~~~~~~~~~~----~~~~~nli~~~~g~~~~~~lll~~H~D 111 (472)
T PRK09133 38 AARDLYKELIEINTTASTGSTTPAAEAMAARLKAAG--FADADIEVTGP----YPRKGNLVARLRGTDPKKPILLLAHMD 111 (472)
T ss_pred HHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHcC--CCceEEEeccC----CCCceeEEEEecCCCCCCcEEEEeecc
Confidence 3467888899999864 334567888888888775 7643 4331 1244566666556543 3333333332
Q ss_pred --CCCCC--CCce----E---EEEecceeecCCCCCCCCCCcccccccccccchHHHHHHHHHHHHhcC--CCceEEEEE
Q 007947 338 --PPGGS--AKIK----L---ALVGKGLTFDSGGYNIKTGPGCLIENMKYDMGGAAAVLGAAKAIGQIK--PPGVEVHFI 404 (583)
Q Consensus 338 --g~~~~--~~~~----i---~LVGKGiTFDsGG~slKp~~~~~M~~MK~DM~GAAaVlga~~aia~lk--lp~vnV~~i 404 (583)
|.+.+ ...| + -+.|+|. .+|| +|.|+.+.+++++.+.+ ++ .+|+.+
T Consensus 112 tVp~~~~~W~~dPf~~~~~dg~iyGRGa-----------------~D~K---g~~aa~l~a~~~l~~~~~~~~-~~i~~~ 170 (472)
T PRK09133 112 VVEAKREDWTRDPFKLVEENGYFYGRGT-----------------SDDK---ADAAIWVATLIRLKREGFKPK-RDIILA 170 (472)
T ss_pred cCCCChhcCCCCCCcceEeCCEEEecCc-----------------ccch---HHHHHHHHHHHHHHhcCCCCC-CCEEEE
Confidence 21100 0011 1 2344442 2354 48888899999998765 44 678777
Q ss_pred Eeeccc
Q 007947 405 VAACEN 410 (583)
Q Consensus 405 i~~~EN 410 (583)
+-..|=
T Consensus 171 ~~~dEE 176 (472)
T PRK09133 171 LTGDEE 176 (472)
T ss_pred EECccc
Confidence 766654
No 48
>PRK08554 peptidase; Reviewed
Probab=45.71 E-value=3e+02 Score=30.49 Aligned_cols=123 Identities=15% Similarity=0.156 Sum_probs=62.2
Q ss_pred HHHHHHHhhcCCCCCCCh------HHHHHHHHHHhhhcCCceEEEEeCHHHHHHcCCCchhhhcccCCCCCeEEEE-EEc
Q 007947 265 AVIFGRELVNSPANVLTP------AVLAEEASKVASMYSDVLSATILDIEKCKELKMGSYLGVAAASANLPHFIHL-CYK 337 (583)
Q Consensus 265 ~~~~aRdL~n~P~N~ltP------~~~A~~a~~~~~~~~~~~~v~V~d~~~l~~~gmg~llaV~~GS~~pPrli~l-~Y~ 337 (583)
.+.+.++|++.|+-.-.+ ...++...+.+++.+ +++++++.. +-..+++.- |+. +|+++.. ++.
T Consensus 3 ~~~~l~~LV~i~S~~~~~~~~~~~~~~~~~l~~~l~~~G--~~~~~~~~~-----~~~~l~~~~-~~~-~~~l~l~gH~D 73 (438)
T PRK08554 3 VLELLSSLVSFETVNDPSKGIKPSKECPKFIKDTLESWG--IESELIEKD-----GYYAVYGEI-GEG-KPKLLFMAHFD 73 (438)
T ss_pred HHHHHHHHhCCCCCCCcccCcchHHHHHHHHHHHHHHCC--CeEEEEecC-----CceEEEEEe-CCC-CCEEEEEeccc
Confidence 456778899998733221 467777788888775 888877542 212233321 222 2333222 221
Q ss_pred --CCCCC--CCceEEEEecceeecCCCCCCCCCCcccccccccccchHHHHHHHHHHHHhcCCCceEEEEEEeeccc
Q 007947 338 --PPGGS--AKIKLALVGKGLTFDSGGYNIKTGPGCLIENMKYDMGGAAAVLGAAKAIGQIKPPGVEVHFIVAACEN 410 (583)
Q Consensus 338 --g~~~~--~~~~i~LVGKGiTFDsGG~slKp~~~~~M~~MK~DM~GAAaVlga~~aia~lklp~vnV~~ii~~~EN 410 (583)
|.+++ ...|...+-+| | -|- +. +--+|| +|.|+.+.+++++.+.+++ -+|..++-.-|-
T Consensus 74 tVp~~~~~w~~~Pf~~~~~~------g-~ly-Gr--G~~DmK---gg~aa~l~A~~~l~~~~~~-~~i~l~~~~dEE 136 (438)
T PRK08554 74 VVPVNPEEWNTEPFKLTVKG------D-KAY-GR--GSADDK---GNVASVMLALKELSKEPLN-GKVIFAFTGDEE 136 (438)
T ss_pred cCCCCccccccCCceeEEEC------C-EEE-EC--Ccccch---HHHHHHHHHHHHHHhcCCC-CCEEEEEEcccc
Confidence 11110 11222211110 0 011 01 111233 5778889999999877665 577777766654
No 49
>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.
Probab=43.74 E-value=20 Score=29.07 Aligned_cols=31 Identities=29% Similarity=0.368 Sum_probs=22.3
Q ss_pred eEEEEEEeecccCCCCC-CCCCCcEEEccCCcEEE
Q 007947 399 VEVHFIVAACENMISGT-GMRPGDIITAANGKTIE 432 (583)
Q Consensus 399 vnV~~ii~~~ENm~sg~-A~rPGDVvts~~GkTVE 432 (583)
+-|..+ .+|.|... .++|||+|.+.||+.|+
T Consensus 28 ~~V~~v---~~~s~a~~~gl~~GD~I~~ing~~i~ 59 (82)
T cd00992 28 IFVSRV---EPGGPAERGGLRVGDRILEVNGVSVE 59 (82)
T ss_pred eEEEEE---CCCChHHhCCCCCCCEEEEECCEEcC
Confidence 555554 44555554 58999999999998764
No 50
>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=42.78 E-value=16 Score=30.31 Aligned_cols=31 Identities=35% Similarity=0.599 Sum_probs=21.8
Q ss_pred eEEEEEEeecccCCCC-CCCCCCcEEEccCCcEEE
Q 007947 399 VEVHFIVAACENMISG-TGMRPGDIITAANGKTIE 432 (583)
Q Consensus 399 vnV~~ii~~~ENm~sg-~A~rPGDVvts~~GkTVE 432 (583)
+.|..+ .+|-|.. ...+|||+|++.||+.|.
T Consensus 26 ~~V~~v---~~~s~a~~~gl~~GD~I~~Ing~~i~ 57 (90)
T cd00987 26 VLVASV---DPGSPAAKAGLKPGDVILAVNGKPVK 57 (90)
T ss_pred EEEEEE---CCCCHHHHcCCCcCCEEEEECCEECC
Confidence 444444 4565554 348999999999999764
No 51
>PRK10199 alkaline phosphatase isozyme conversion aminopeptidase; Provisional
Probab=42.76 E-value=1.7e+02 Score=31.81 Aligned_cols=32 Identities=19% Similarity=0.370 Sum_probs=24.9
Q ss_pred cc-chHHHHHHHHHHHHhcCCCceEEEEEEeecc
Q 007947 377 DM-GGAAAVLGAAKAIGQIKPPGVEVHFIVAACE 409 (583)
Q Consensus 377 DM-~GAAaVlga~~aia~lklp~vnV~~ii~~~E 409 (583)
|| +|.|+++-+++++.+.+++ .+|+.+.-..|
T Consensus 143 DnasGvA~lLe~ar~l~~~~~~-~~I~fv~~~~E 175 (346)
T PRK10199 143 DNAAGLGVMLELAERLKNVPTE-YGIRFVATSGE 175 (346)
T ss_pred ccHHHHHHHHHHHHHHhhCCCC-CcEEEEEECCc
Confidence 56 8999999999999988766 67766655554
No 52
>PRK13007 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=42.68 E-value=2.9e+02 Score=28.88 Aligned_cols=40 Identities=15% Similarity=0.120 Sum_probs=30.0
Q ss_pred HHHHHHHHHhhcCCCCCCChHHHHHHHHHHhhhcCCceEEE
Q 007947 263 SSAVIFGRELVNSPANVLTPAVLAEEASKVASMYSDVLSAT 303 (583)
Q Consensus 263 a~~~~~aRdL~n~P~N~ltP~~~A~~a~~~~~~~~~~~~v~ 303 (583)
.+-+++.++|++.|+-.-.-...+++.++..+++ .+++++
T Consensus 7 ~~~~~~l~~li~ips~s~~e~~~~~~l~~~l~~~-~~~~~~ 46 (352)
T PRK13007 7 ADLAELTAALVDIPSVSGDEKALADAVEAALRAL-PHLEVI 46 (352)
T ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHhC-cCceEE
Confidence 3557899999999998777777888888877775 236654
No 53
>PRK13013 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=42.35 E-value=2e+02 Score=31.08 Aligned_cols=42 Identities=10% Similarity=0.105 Sum_probs=31.6
Q ss_pred HHHHHHHHHhhcCCCCC---CChHHHHHHHHHHhhhcCCceEEEEeC
Q 007947 263 SSAVIFGRELVNSPANV---LTPAVLAEEASKVASMYSDVLSATILD 306 (583)
Q Consensus 263 a~~~~~aRdL~n~P~N~---ltP~~~A~~a~~~~~~~~~~~~v~V~d 306 (583)
-+.+.+-|+|++.|+-. ..-...++...+.+++++ +++++++
T Consensus 14 ~~~~~~l~~Lv~i~S~~~~g~~e~~~~~~l~~~l~~~G--~~~~~~~ 58 (427)
T PRK13013 14 DDLVALTQDLIRIPTLNPPGRAYREICEFLAARLAPRG--FEVELIR 58 (427)
T ss_pred HHHHHHHHHHhcCCCcCCCCccHHHHHHHHHHHHHHCC--CceEEEe
Confidence 45678999999998853 223577888888888875 8888775
No 54
>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=40.46 E-value=24 Score=29.00 Aligned_cols=27 Identities=26% Similarity=0.571 Sum_probs=20.5
Q ss_pred eecccCCCCC-CCCCCcEEEccCCcEEE
Q 007947 406 AACENMISGT-GMRPGDIITAANGKTIE 432 (583)
Q Consensus 406 ~~~ENm~sg~-A~rPGDVvts~~GkTVE 432 (583)
...+|-|... ..+|||+|++.||+.|.
T Consensus 19 ~v~~~s~a~~~gl~~GD~I~~vng~~i~ 46 (85)
T cd00988 19 SVLPGSPAAKAGIKAGDIIVAIDGEPVD 46 (85)
T ss_pred EecCCCCHHHcCCCCCCEEEEECCEEcC
Confidence 3456666655 59999999999999753
No 55
>smart00506 A1pp Appr-1"-p processing enzyme. Function determined by Martzen et al. Extended family detected by reciprocal PSI-BLAST searches (unpublished results, and Pehrson & Fuji).
Probab=40.25 E-value=2.7e+02 Score=24.74 Aligned_cols=104 Identities=13% Similarity=0.068 Sum_probs=58.4
Q ss_pred eecCCcccccccEEEEEEecCCCCCCCCcccchhHHHHHHHHhhHHH-HHHHhc-CCCCCCCCcEEEEecCCCCccEEEE
Q 007947 83 AKEVDVVEWKGDILAVGVTEKDMGKDDNSKFQNSILKKLDAQLGGLL-SEASSE-EDFTGKAGQSTVIRLPGIGSKRVGL 160 (583)
Q Consensus 83 ~~~~~~~~~~~D~LVVgV~e~~~~~~~~s~~~~~~~~~ld~~l~g~L-s~~~~~-~~f~Gk~Ge~~~l~~~~~~~~rvll 160 (583)
....|....++|++|-++.+.... .......+.+..+..+ .+.+.. ..-.-+.|+.........+.+.|+-
T Consensus 4 ~~~Gdi~~~~~d~IV~~~n~~~~~-------~~g~a~~i~~~~g~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~Iih 76 (133)
T smart00506 4 VVKGDITKPRADAIVNAANSDGAH-------GGGVAGAIARAAGKALEKEAFRKLAGGECPVGTAVVTEGGNLPAKYVIH 76 (133)
T ss_pred EEeCCCCcccCCEEEECCCcccCC-------CCcHHHHHHHHhChHHHHHHHHHhcCCCcCCccEEEecCCCCCCCEEEE
Confidence 355677778899999887766432 1234556666666553 333222 1113467776655443345565554
Q ss_pred EecCCC-C----CChHHHHHHHHHHHHHHHHcccCcEEE
Q 007947 161 IGLGQS-A----SRAGDFRSLGESVAAAAKAAQASNVAV 194 (583)
Q Consensus 161 VGLGk~-~----~~~~~~r~~~~a~a~~~k~~~~~~v~i 194 (583)
+= +.. . ...+.+++....+.+.+...+.+++++
T Consensus 77 ~~-~p~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~sIa~ 114 (133)
T smart00506 77 AV-GPRASGHSNEGFELLENAYRNCLELAIELGITSVAI 114 (133)
T ss_pred eC-CCCCCCCCccHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 42 222 1 234666666666777777777776655
No 56
>PRK08651 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=38.36 E-value=5.2e+02 Score=27.54 Aligned_cols=42 Identities=19% Similarity=0.191 Sum_probs=30.8
Q ss_pred HHHHHHHHHhhcCCCCC---CChHHHHHHHHHHhhhcCCceEEEEeC
Q 007947 263 SSAVIFGRELVNSPANV---LTPAVLAEEASKVASMYSDVLSATILD 306 (583)
Q Consensus 263 a~~~~~aRdL~n~P~N~---ltP~~~A~~a~~~~~~~~~~~~v~V~d 306 (583)
.+.+.+.|+|++.|+-. -.-..+++...+.+++.+ +++++.+
T Consensus 6 ~~~~~~l~~lv~i~S~s~~~~~~~~~a~~l~~~l~~~G--~~~~~~~ 50 (394)
T PRK08651 6 FDIVEFLKDLIKIPTVNPPGENYEEIAEFLRDTLEELG--FSTEIIE 50 (394)
T ss_pred HHHHHHHHHHhcCCccCCCCcCHHHHHHHHHHHHHHcC--CeEEEEe
Confidence 45678899999999854 222467888888888875 8888765
No 57
>TIGR01891 amidohydrolases amidohydrolase. This model represents a subfamily of amidohydrolases which are a subset of those sequences detected by pfam01546. Included within this group are hydrolases of hippurate (N-benzylglycine), indoleacetic acid (IAA) N-conjugates of amino acids, N-acetyl-L-amino acids and aminobenzoylglutamate. These hydrolases are of the carboxypeptidase-type, most likely utilizing a zinc ion in the active site.
Probab=38.11 E-value=2.9e+02 Score=29.35 Aligned_cols=36 Identities=8% Similarity=0.024 Sum_probs=29.0
Q ss_pred HHHHHhhcCCCCCCChHHHHHHHHHHhhhcCCceEEEE
Q 007947 267 IFGRELVNSPANVLTPAVLAEEASKVASMYSDVLSATI 304 (583)
Q Consensus 267 ~~aRdL~n~P~N~ltP~~~A~~a~~~~~~~~~~~~v~V 304 (583)
++.++|+..|+---.-...++...+.+++.+ ++++.
T Consensus 3 ~~~~~L~~ips~s~~E~~~a~~l~~~l~~~g--~~~~~ 38 (363)
T TIGR01891 3 DIRRHLHEHPELSFEEFKTSSLIAEALESLG--IEVRR 38 (363)
T ss_pred HHHHHHhcCCCCCCchHHHHHHHHHHHHHcC--CceEe
Confidence 6889999999866566788888888888875 88775
No 58
>PF06675 DUF1177: Protein of unknown function (DUF1177); InterPro: IPR009561 This family consists of several hypothetical archaeal and bacterial proteins of around 300 residues in length. The function of this family is unknown.
Probab=37.09 E-value=1e+02 Score=32.10 Aligned_cols=152 Identities=22% Similarity=0.390 Sum_probs=91.2
Q ss_pred CeEEEEEEcCCCC----CCCceEEEEecceeecCCCCCCCCCCcccccccccccchHHHHHHHHHHHHhcCCCc----eE
Q 007947 329 PHFIHLCYKPPGG----SAKIKLALVGKGLTFDSGGYNIKTGPGCLIENMKYDMGGAAAVLGAAKAIGQIKPPG----VE 400 (583)
Q Consensus 329 Prli~l~Y~g~~~----~~~~~i~LVGKGiTFDsGG~slKp~~~~~M~~MK~DM~GAAaVlga~~aia~lklp~----vn 400 (583)
--||.+.|.|..+ ...+++.+||+ -|||.-.|. +-.+=+|-=||-+.+.+..=+++++-+| -.
T Consensus 12 tDfvki~ipG~~Gk~~Gg~aptlGIiGR-----LGgigARP~----~iGlVSDaDGAi~ala~a~KL~~M~~kGd~L~GD 82 (276)
T PF06675_consen 12 TDFVKILIPGSNGKSSGGSAPTLGIIGR-----LGGIGARPE----RIGLVSDADGAIAALAAALKLLDMQAKGDVLPGD 82 (276)
T ss_pred eeEEEEEecCccCccCCCCCCeeEEEee-----ccccccccc----ceeeeecCchHHHHHHHHHHHHHHHHcCCccCCc
Confidence 3588999988422 35689999998 589999984 5778999999998888887788776442 34
Q ss_pred EEEEEeecccCCCCCCCCCCcEEEccCCcEEEeecCCccCceehhhhhhHHHhcCCCeEEEecchhHHHHH-----hhCC
Q 007947 401 VHFIVAACENMISGTGMRPGDIITAANGKTIEVNNTDAEGRLTLADALIYACNQGVDKVIDLATLTGACVV-----ALGP 475 (583)
Q Consensus 401 V~~ii~~~ENm~sg~A~rPGDVvts~~GkTVEV~NTDAEGRLvLADaL~Ya~~~~p~~iIDiATLTGA~~v-----ALG~ 475 (583)
|+..-=+|-|.| .+|-|=|--|+- =+=++....|-..-.-|.|+.|-|--|--++ ||-+
T Consensus 83 Vii~ThIcp~Ap----t~PH~PvpFM~s------------Pv~~~~~n~~EV~p~mdAILSiDTTKGNRiin~~GfAisP 146 (276)
T PF06675_consen 83 VIITTHICPDAP----TRPHDPVPFMGS------------PVDMATMNRHEVDPEMDAILSIDTTKGNRIINHRGFAISP 146 (276)
T ss_pred EEEEEecCCCCC----CCCCCCcccccC------------ccCHHHHHHhhcCcccceEEEEecCCCceeeccCCeEecc
Confidence 555555555544 455554444431 1123444444444456778877776543221 1111
Q ss_pred Ce-EEE-eeCCHHHHHHHHHHHHHhCCceeeCCCC
Q 007947 476 SV-AGA-FTPSDDLANEVMAASQVSGEKIWRMPLE 508 (583)
Q Consensus 476 ~~-agv-fsn~~~l~~~l~~ag~~~gE~~WrlPl~ 508 (583)
.. -|. .--+|+|.+-+ ...+|+...-+|+.
T Consensus 147 tvKeGyILrvsedLl~im---~~~TG~~~~~~PlT 178 (276)
T PF06675_consen 147 TVKEGYILRVSEDLLDIM---ERVTGKLPVTFPLT 178 (276)
T ss_pred cccceEEEEcCHHHHHHH---HhhcCCCceEEecc
Confidence 00 011 11235554433 24578888888886
No 59
>KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism]
Probab=36.64 E-value=1.2e+02 Score=33.10 Aligned_cols=99 Identities=22% Similarity=0.299 Sum_probs=73.0
Q ss_pred hhcCCCCCCChHHHHHHHHHHhhhcCCceEEEEeCHHHHHHcCCCchhhhcccCCCCCeEEEEEEcCCCCCCCceEEEEe
Q 007947 272 LVNSPANVLTPAVLAEEASKVASMYSDVLSATILDIEKCKELKMGSYLGVAAASANLPHFIHLCYKPPGGSAKIKLALVG 351 (583)
Q Consensus 272 L~n~P~N~ltP~~~A~~a~~~~~~~~~~~~v~V~d~~~l~~~gmg~llaV~~GS~~pPrli~l~Y~g~~~~~~~~i~LVG 351 (583)
+..+-.=++-|.-+-..+++++.+|. ..-|.||-|- |=.+.-+|+..+|.. .++-|++.|
T Consensus 216 IQGEaGVvvP~~GYL~~vreLCtkyn---vl~I~DEvQT-------------Gl~RTGk~la~d~en----v~PDivilg 275 (427)
T KOG1402|consen 216 IQGEAGVVVPPPGYLKKVRELCTKYN---VLLIADEVQT-------------GLARTGKLLACDYEN----VRPDIVILG 275 (427)
T ss_pred cccccceEeCCchhHHHHHHHHHhhc---EEEEehhhhh-------------cccccCcEEEeehhh----cCCCeEEEe
Confidence 33444556677777888999999995 4578887543 445778999999953 467899999
Q ss_pred cceeecCCC--------------CCCCCCCcccccccccccchHHHHHHHHHHHHhcC
Q 007947 352 KGLTFDSGG--------------YNIKTGPGCLIENMKYDMGGAAAVLGAAKAIGQIK 395 (583)
Q Consensus 352 KGiTFDsGG--------------~slKp~~~~~M~~MK~DM~GAAaVlga~~aia~lk 395 (583)
|++ ||| ++|||+. .=.+.-..--|.++-++++.-|-+-|
T Consensus 276 Kal---SGG~~Pvsavl~~~~im~~~~pge--HgsTyggNpLg~~vaiAalevi~eek 328 (427)
T KOG1402|consen 276 KAL---SGGVYPVSAVLADDDIMLNIKPGE--HGSTYGGNPLGCAVAIAALEVIVEEK 328 (427)
T ss_pred ccc---cCCeeeeEEEEecHHHHhccCCCc--cccccCCChHHHHHHHHHHHHHHHHH
Confidence 998 888 4799977 55666677778887777777665543
No 60
>KOG0884 consensus Similar to cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=36.53 E-value=17 Score=33.76 Aligned_cols=56 Identities=27% Similarity=0.519 Sum_probs=40.6
Q ss_pred HhCCceeeCCCChhHHhhccCcc---cccccCCCCCCchhHHHHHHhhccCCCCCeEEeeecccCCC
Q 007947 497 VSGEKIWRMPLEESYWEMMKSGV---ADMVNTGGRQGGAITAALFLKQYVDEKVQWMHIDIAGPVWS 560 (583)
Q Consensus 497 ~~gE~~WrlPl~~~y~~~lkS~v---ADl~N~g~~~~gaitAA~FL~~Fv~~~~~WaHlDIAG~a~~ 560 (583)
+-|+.+|-=|..|||.+.||-++ --|.|-|...-|+ +-|+. --+-.|||+-=+.+.
T Consensus 61 rgg~siwg~~fede~~~~lkh~~rg~vsmanngp~tn~s-------qffit-y~kq~hldmkytvfg 119 (161)
T KOG0884|consen 61 RGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGS-------QFFIT-YGKQPHLDMKYTVFG 119 (161)
T ss_pred CCCccccCCcchHHHHHHHhhccceeEEcccCCCCCCCc-------eEEEE-ecCCCccceeEeeee
Confidence 56899999999999999999654 5677777544454 23442 235789999877663
No 61
>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.
Probab=36.29 E-value=25 Score=28.47 Aligned_cols=31 Identities=26% Similarity=0.460 Sum_probs=21.0
Q ss_pred eEEEEEEeecccCCCCCC-CCCCcEEEccCCcEEE
Q 007947 399 VEVHFIVAACENMISGTG-MRPGDIITAANGKTIE 432 (583)
Q Consensus 399 vnV~~ii~~~ENm~sg~A-~rPGDVvts~~GkTVE 432 (583)
+-|..+ -+|.|...+ ++|||+|.+-||+.+.
T Consensus 28 ~~i~~v---~~~s~a~~~gl~~GD~I~~In~~~v~ 59 (85)
T smart00228 28 VVVSSV---VPGSPAAKAGLKVGDVILEVNGTSVE 59 (85)
T ss_pred EEEEEE---CCCCHHHHcCCCCCCEEEEECCEECC
Confidence 555555 344444444 9999999999996553
No 62
>PLN02693 IAA-amino acid hydrolase
Probab=35.82 E-value=6.5e+02 Score=27.92 Aligned_cols=123 Identities=14% Similarity=0.116 Sum_probs=71.5
Q ss_pred HHHHHHHHHhhcCCCCCCChHHHHHHHHHHhhhcCCceEEEEeCHHHHHHcCCCchhhhcccCCCCCeEEEEEEcCCCCC
Q 007947 263 SSAVIFGRELVNSPANVLTPAVLAEEASKVASMYSDVLSATILDIEKCKELKMGSYLGVAAASANLPHFIHLCYKPPGGS 342 (583)
Q Consensus 263 a~~~~~aRdL~n~P~N~ltP~~~A~~a~~~~~~~~~~~~v~V~d~~~l~~~gmg~llaV~~GS~~pPrli~l~Y~g~~~~ 342 (583)
.+-+.+.|+|...|.=-..=...++...+..++++ +++++.+ +-.+++++- |+...|+++. ++. -
T Consensus 47 ~~~~~~r~~lh~~PE~s~~E~~ta~~i~~~L~~~G--~~~~~~~-------~~~~via~~-g~~~g~~i~l---~~h--~ 111 (437)
T PLN02693 47 DWMVRIRRKIHENPELGYEEFETSKLIRSELDLIG--IKYRYPV-------AITGIIGYI-GTGEPPFVAL---RAD--M 111 (437)
T ss_pred HHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHCC--CeeEecC-------CCcEEEEEE-CCCCCCEEEE---Eee--c
Confidence 45689999999999988888888888888888875 8876522 335666654 3323344332 221 0
Q ss_pred CCceEEEEecceeecCCCCCCCCCCcccccccccccchHHHHHHHHHHHHhcC--CCceEEEEEEeeccc
Q 007947 343 AKIKLALVGKGLTFDSGGYNIKTGPGCLIENMKYDMGGAAAVLGAAKAIGQIK--PPGVEVHFIVAACEN 410 (583)
Q Consensus 343 ~~~~i~LVGKGiTFDsGG~slKp~~~~~M~~MK~DM~GAAaVlga~~aia~lk--lp~vnV~~ii~~~EN 410 (583)
+.=|+- -..+.+||+ .+++ -|+ .....++.|+.+++++++.+.+ ++ -+|..+.--.|=
T Consensus 112 DaVp~~-e~~~~~~~p----~~~G---~~h-acGhkg~~A~~l~Aa~~L~~~~~~~~-g~V~~if~pdEE 171 (437)
T PLN02693 112 DALPIQ-EAVEWEHKS----KIPG---KMH-ACGHDGHVAMLLGAAKILQEHRHHLQ-GTVVLIFQPAEE 171 (437)
T ss_pred CCCcCC-CCCCCCCCC----CCCC---CEE-CCcchHHHHHHHHHHHHHHhCcccCC-ceEEEEEEEccc
Confidence 000100 001234444 1222 232 1111357889999999998875 44 467666655554
No 63
>PRK06446 hypothetical protein; Provisional
Probab=35.30 E-value=4.6e+02 Score=28.77 Aligned_cols=41 Identities=15% Similarity=0.061 Sum_probs=30.7
Q ss_pred HHHHHHHHhhcCCCCCCCh---HHHHHHHHHHhhhcCCceEEEEeC
Q 007947 264 SAVIFGRELVNSPANVLTP---AVLAEEASKVASMYSDVLSATILD 306 (583)
Q Consensus 264 ~~~~~aRdL~n~P~N~ltP---~~~A~~a~~~~~~~~~~~~v~V~d 306 (583)
+.+.+.++|+..|+-.-.+ ...++...+..++++ +++++.+
T Consensus 3 ~~~~~l~eLV~i~S~s~~~~~~~~~a~~l~~~l~~~G--~~ve~~~ 46 (436)
T PRK06446 3 EELYTLIEFLKKPSISATGEGIEETANYLKDTMEKLG--IKANIER 46 (436)
T ss_pred hHHHHHHHHhCCCCCCCCcHhHHHHHHHHHHHHHHCC--CeEEEEe
Confidence 3567889999999966443 367777778788775 8888765
No 64
>cd02907 Macro_Af1521_BAL_like Macro domain, Af1521- and BAL-like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. The macro domains in this family show similarity to Af1521, a protein from Archaeoglobus fulgidus containing a stand-alone macro domain. Af1521 binds ADP-ribose and exhibits phosphatase activity toward Appr-1"-p. Also included in this family are the N-terminal (or first) macro domains
Probab=34.26 E-value=4.2e+02 Score=25.33 Aligned_cols=109 Identities=11% Similarity=0.043 Sum_probs=60.7
Q ss_pred EEEeecCCcccccccEEEEEEecCCCCCCCCcccchhHHHHHHHHhhHHHHHH----HhcCCCCCCCCcEEEEecCCCCc
Q 007947 80 SFAAKEVDVVEWKGDILAVGVTEKDMGKDDNSKFQNSILKKLDAQLGGLLSEA----SSEEDFTGKAGQSTVIRLPGIGS 155 (583)
Q Consensus 80 ~~~~~~~~~~~~~~D~LVVgV~e~~~~~~~~s~~~~~~~~~ld~~l~g~Ls~~----~~~~~f~Gk~Ge~~~l~~~~~~~ 155 (583)
++.+...+..++++|++|-+..+..... ......+.+..+..+.+. +++. -.=+.|+......-..+.
T Consensus 3 ~i~i~~GdI~~~~~DaIVn~an~~~~~~-------ggv~~ai~~~~G~~l~~e~~~~~~~~-g~~~~G~~~~T~~~~L~~ 74 (175)
T cd02907 3 TLSVIKGDITRFPVDAIVNAANEDLKHG-------GGLALAIVKAGGPEIQEESDEYVRKN-GPVPTGEVVVTSAGKLPC 74 (175)
T ss_pred EEEEEECCcceeecCEEEECCCCCcCCC-------CCHHHHHHHHHhHHHHHHHHHHHHhc-CCCCCCcEEEecCCCCCC
Confidence 3455677888899999998766653221 122334444444433332 2221 122577765544334667
Q ss_pred cEEEEEecCCCC------CChHHHHHHHHHHHHHHHHcccCcEEEEec
Q 007947 156 KRVGLIGLGQSA------SRAGDFRSLGESVAAAAKAAQASNVAVVLA 197 (583)
Q Consensus 156 ~rvllVGLGk~~------~~~~~~r~~~~a~a~~~k~~~~~~v~i~l~ 197 (583)
++|+-+ .|..- ...+.+++....+.+.+.+.+.+++++-.-
T Consensus 75 k~IiH~-v~P~~~~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIA~P~l 121 (175)
T cd02907 75 KYVIHA-VGPRWSGGEAEECVEKLKKAILNSLRKAEELGLRSIAIPAI 121 (175)
T ss_pred CEEEEe-CCCcCCCCCCchHHHHHHHHHHHHHHHHHHcCCCEEEECCc
Confidence 776655 33321 124556666666777777888887766443
No 65
>PF11330 DUF3132: Protein of unknown function (DUF3132); InterPro: IPR021479 This entry is represented by the Citrus psorosis virus, 54kDa protein; it is a family of uncharacterised viral proteins.
Probab=34.16 E-value=50 Score=29.15 Aligned_cols=43 Identities=21% Similarity=0.377 Sum_probs=38.6
Q ss_pred cccCCCCCCCCCCcEEEccCCcEEEeecCCccCceehhhhhhH
Q 007947 408 CENMISGTGMRPGDIITAANGKTIEVNNTDAEGRLTLADALIY 450 (583)
Q Consensus 408 ~ENm~sg~A~rPGDVvts~~GkTVEV~NTDAEGRLvLADaL~Y 450 (583)
-|--|+|.-.--+||+--.+|.-|-|++.-.|||+.+-|-++-
T Consensus 67 eeghidgmrtagddvllekdgevvmildsrdegrmwikddvwa 109 (124)
T PF11330_consen 67 EEGHIDGMRTAGDDVLLEKDGEVVMILDSRDEGRMWIKDDVWA 109 (124)
T ss_pred hccccccccccCCeEEEecCCcEEEEEeccccCceeeechhHH
Confidence 3677888888889999999999999999999999999998764
No 66
>TIGR02038 protease_degS periplasmic serine pepetdase DegS. This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).
Probab=33.60 E-value=25 Score=37.84 Aligned_cols=28 Identities=21% Similarity=0.245 Sum_probs=22.0
Q ss_pred EeecccCCCCC-CCCCCcEEEccCCcEEE
Q 007947 405 VAACENMISGT-GMRPGDIITAANGKTIE 432 (583)
Q Consensus 405 i~~~ENm~sg~-A~rPGDVvts~~GkTVE 432 (583)
....+|.|... .+||||||++.||+.|.
T Consensus 283 ~~V~~~spA~~aGL~~GDvI~~Ing~~V~ 311 (351)
T TIGR02038 283 TGVDPNGPAARAGILVRDVILKYDGKDVI 311 (351)
T ss_pred eecCCCChHHHCCCCCCCEEEEECCEEcC
Confidence 34467877654 59999999999999764
No 67
>TIGR01246 dapE_proteo succinyl-diaminopimelate desuccinylase, proteobacterial clade. This model describes a proteobacterial subset of succinyl-diaminopimelate desuccinylases. An experimentally confirmed Gram-positive lineage succinyl-diaminopimelate desuccinylase has been described for Corynebacterium glutamicum, and a neighbor-joining tree shows the seed members, SP:Q59284, and putative archaeal members such as TrEMBL:O58003 in a single clade. However, the archaeal members differ substantially, share a number of motifs with acetylornithine deacetylases rather than succinyl-diaminopimelate desuccinylases, and are not taken as trusted examples of succinyl-diaminopimelate desuccinylases. This model is limited to proteobacterial members for this reason.
Probab=32.55 E-value=6.2e+02 Score=26.72 Aligned_cols=39 Identities=10% Similarity=0.135 Sum_probs=30.5
Q ss_pred HHHHHHhhcCCCCCCChHHHHHHHHHHhhhcCCceEEEEeC
Q 007947 266 VIFGRELVNSPANVLTPAVLAEEASKVASMYSDVLSATILD 306 (583)
Q Consensus 266 ~~~aRdL~n~P~N~ltP~~~A~~a~~~~~~~~~~~~v~V~d 306 (583)
+.+.++|++.|+---.-...++...+.+++++ +++++.+
T Consensus 2 ~~~l~~lv~ips~s~~e~~~~~~i~~~l~~~G--~~~~~~~ 40 (370)
T TIGR01246 2 TELAKELISRPSVTPNDAGCQDIIAERLEKLG--FEIEWMH 40 (370)
T ss_pred hHHHHHHhcCCCCCcchHHHHHHHHHHHHHCC--CEEEEEe
Confidence 35788999999877666677788888888885 8888763
No 68
>PRK12893 allantoate amidohydrolase; Reviewed
Probab=32.07 E-value=6.5e+02 Score=27.11 Aligned_cols=32 Identities=13% Similarity=0.116 Sum_probs=22.7
Q ss_pred chHHHHHHHHHHHHhcCCC-ceEEEEEEeeccc
Q 007947 379 GGAAAVLGAAKAIGQIKPP-GVEVHFIVAACEN 410 (583)
Q Consensus 379 ~GAAaVlga~~aia~lklp-~vnV~~ii~~~EN 410 (583)
+|-|+.+.+++++.+.+.+ +-+|+.+.-..|-
T Consensus 98 ~gvaa~l~a~~~l~~~~~~~~~~v~~~~~~dEE 130 (412)
T PRK12893 98 LGVLAALEVVRTLNDAGIRTRRPIEVVSWTNEE 130 (412)
T ss_pred hhHHHHHHHHHHHHHcCCCCCCCeEEEEEcccc
Confidence 6899999999999987631 1456666555554
No 69
>PRK05111 acetylornithine deacetylase; Provisional
Probab=32.07 E-value=3.6e+02 Score=28.63 Aligned_cols=40 Identities=13% Similarity=0.091 Sum_probs=29.1
Q ss_pred HHHHHHHhhcCCCCCCCh-------HHHHHHHHHHhhhcCCceEEEEeC
Q 007947 265 AVIFGRELVNSPANVLTP-------AVLAEEASKVASMYSDVLSATILD 306 (583)
Q Consensus 265 ~~~~aRdL~n~P~N~ltP-------~~~A~~a~~~~~~~~~~~~v~V~d 306 (583)
-+.+-|+|+..|+-.-.. ...++...+.+++++ +++++..
T Consensus 7 ~i~~l~~lv~i~s~s~~e~~~~~~~~~~~~~l~~~l~~~g--~~~~~~~ 53 (383)
T PRK05111 7 FIEMYRALIATPSISATDPALDQSNRAVIDLLAGWFEDLG--FNVEIQP 53 (383)
T ss_pred HHHHHHHHhCcCCcCCCCcccccchHHHHHHHHHHHHHCC--CeEEEEe
Confidence 467889999999844221 358888888888875 8887654
No 70
>TIGR01883 PepT-like peptidase T-like protein. This model represents a clade of enzymes closely related to Peptidase T, an aminotripeptidase found in bacteria. This clade consists of gram positive bacteria of which several additionally contain a Peptidase T gene.
Probab=30.50 E-value=5.6e+02 Score=26.90 Aligned_cols=62 Identities=5% Similarity=0.054 Sum_probs=37.9
Q ss_pred HHHHHhhcCCCCCCChHHHHHHHHHHhhhcCCceEEEEeCHHHHHHcCCCchhhhcccCCCCCeE
Q 007947 267 IFGRELVNSPANVLTPAVLAEEASKVASMYSDVLSATILDIEKCKELKMGSYLGVAAASANLPHF 331 (583)
Q Consensus 267 ~~aRdL~n~P~N~ltP~~~A~~a~~~~~~~~~~~~v~V~d~~~l~~~gmg~llaV~~GS~~pPrl 331 (583)
.+-++|+..|+=--.-...++...+..+.++ +++++.+-.. ...+...++++-+|+...|.+
T Consensus 4 ~~~~~l~~i~s~s~~e~~~~~~l~~~l~~~g--~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~i 65 (361)
T TIGR01883 4 KYFLELIQIDSESGKEKAILTYLKKQITKLG--IPVSLDEVPA-EVSNDNNLIARLPGTVKFDTI 65 (361)
T ss_pred HHHHHHeecCCCCCcHHHHHHHHHHHHHHcC--CEEEEecccc-ccCCCceEEEEEeCCCCCCcE
Confidence 4567888888765667777788888888775 8877654211 112345666665555332443
No 71
>cd05707 S1_Rrp5_repeat_sc11 S1_Rrp5_repeat_sc11: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 11 (sc11). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=30.06 E-value=50 Score=26.31 Aligned_cols=39 Identities=21% Similarity=0.288 Sum_probs=25.9
Q ss_pred EEEEEEeecccCCC-----CCCCCCCcEEEccCCcEEEeecCCc-cCceeh
Q 007947 400 EVHFIVAACENMIS-----GTGMRPGDIITAANGKTIEVNNTDA-EGRLTL 444 (583)
Q Consensus 400 nV~~ii~~~ENm~s-----g~A~rPGDVvts~~GkTVEV~NTDA-EGRLvL 444 (583)
++.|.++..|--.. ++.|++||.|+ +.|.+.|. +||+.|
T Consensus 23 ~~~G~v~~s~l~~~~~~~~~~~~~~Gd~v~------~~v~~~d~~~~~i~l 67 (68)
T cd05707 23 GVDARVRVSELSDSYLKDWKKRFKVGQLVK------GKIVSIDPDNGRIEM 67 (68)
T ss_pred CCEEEEEHHHCCchhhcCHhhccCCCCEEE------EEEEEEeCCCCEEec
Confidence 36677777643211 55688898885 47788888 566655
No 72
>KOG3857 consensus Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=29.99 E-value=38 Score=36.96 Aligned_cols=40 Identities=15% Similarity=0.267 Sum_probs=32.5
Q ss_pred HHHHHHHhhhcCCceEEEEeCHHH--------------HHHcCCCchhhhcccCCC
Q 007947 286 AEEASKVASMYSDVLSATILDIEK--------------CKELKMGSYLGVAAASAN 327 (583)
Q Consensus 286 A~~a~~~~~~~~~~~~v~V~d~~~--------------l~~~gmg~llaV~~GS~~ 327 (583)
.+.|++..++.+ ++++|+|+-+ .+++.+.+|++||.||.+
T Consensus 87 ~~~a~~~L~~~~--I~~~vyD~v~~ePtv~s~~~alefak~~~fDs~vaiGGGSa~ 140 (465)
T KOG3857|consen 87 VKVAQDSLEENG--INVEVYDKVQPEPTVGSVTAALEFAKKKNFDSFVAIGGGSAH 140 (465)
T ss_pred HHHHHHHHHHcC--CceEEecCccCCCchhhHHHHHHHHHhcccceEEEEcCcchh
Confidence 466777777654 9999999854 578999999999999964
No 73
>PRK15026 aminoacyl-histidine dipeptidase; Provisional
Probab=29.80 E-value=7e+02 Score=28.16 Aligned_cols=39 Identities=13% Similarity=-0.089 Sum_probs=32.6
Q ss_pred HHHHHHHhhcCCCCCCChHHHHHHHHHHhhhcCCceEEEEe
Q 007947 265 AVIFGRELVNSPANVLTPAVLAEEASKVASMYSDVLSATIL 305 (583)
Q Consensus 265 ~~~~aRdL~n~P~N~ltP~~~A~~a~~~~~~~~~~~~v~V~ 305 (583)
-..+-++|++.|+---....+++...+.+++.+ +++++.
T Consensus 12 ~~~~l~~Lv~ips~S~~e~~~~~~l~~~~~~~G--~~~~~d 50 (485)
T PRK15026 12 LWDIFAKICSIPHPSYHEEQLAEYIVGWAKEKG--FHVERD 50 (485)
T ss_pred HHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCC--CEEEEE
Confidence 346778899999888889999999999999885 888774
No 74
>PRK08262 hypothetical protein; Provisional
Probab=28.38 E-value=4.4e+02 Score=29.32 Aligned_cols=34 Identities=24% Similarity=0.215 Sum_probs=27.3
Q ss_pred cchHHHHHHHHHHHHhcC--CCceEEEEEEeecccCC
Q 007947 378 MGGAAAVLGAAKAIGQIK--PPGVEVHFIVAACENMI 412 (583)
Q Consensus 378 M~GAAaVlga~~aia~lk--lp~vnV~~ii~~~ENm~ 412 (583)
.+|.|+.+.+++++.+.+ ++ .+|+.++-.-|-.-
T Consensus 156 Kg~~aa~L~A~~~l~~~~~~l~-~~I~llf~~dEE~g 191 (486)
T PRK08262 156 KGSLVAILEAAEALLAQGFQPR-RTIYLAFGHDEEVG 191 (486)
T ss_pred chhHHHHHHHHHHHHHcCCCCC-CeEEEEEecccccC
Confidence 588899999999998775 55 68888887777743
No 75
>PRK07338 hypothetical protein; Provisional
Probab=28.27 E-value=5.2e+02 Score=27.73 Aligned_cols=41 Identities=5% Similarity=-0.121 Sum_probs=28.9
Q ss_pred HHHHHHHHhhcCCCCCCChH---HHHHHHHHHhhhcCCceEEEEeC
Q 007947 264 SAVIFGRELVNSPANVLTPA---VLAEEASKVASMYSDVLSATILD 306 (583)
Q Consensus 264 ~~~~~aRdL~n~P~N~ltP~---~~A~~a~~~~~~~~~~~~v~V~d 306 (583)
+-+.+-++|++.|+-.-++. .+++...+..++.+ +++++++
T Consensus 18 ~~~~~l~~lv~i~S~s~~~~~~~~~~~~l~~~l~~~G--~~~~~~~ 61 (402)
T PRK07338 18 PMLEQLIAWAAINSGSRNLDGLARMAELLADAFAALP--GEIELIP 61 (402)
T ss_pred HHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHhCC--CcEEEec
Confidence 34567778999886554553 56777777777775 8888775
No 76
>cd05687 S1_RPS1_repeat_ec1_hs1 S1_RPS1_repeat_ec1_hs1: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 1 of the Escherichia coli and Homo sapiens RPS1 (ec1 and hs1, respectively). Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=28.11 E-value=43 Score=26.75 Aligned_cols=38 Identities=21% Similarity=0.237 Sum_probs=24.7
Q ss_pred EEEEEeecccCCC-----CCCCCCCcEEEccCCcEEEeecCC-ccCceeh
Q 007947 401 VHFIVAACENMIS-----GTGMRPGDIITAANGKTIEVNNTD-AEGRLTL 444 (583)
Q Consensus 401 V~~ii~~~ENm~s-----g~A~rPGDVvts~~GkTVEV~NTD-AEGRLvL 444 (583)
+.|++|..|-... ...+++||+|+.. |.+.| ..|++.|
T Consensus 24 ~~g~l~~~e~~~~~~~~~~~~~~~Gd~i~~~------i~~~~~~~~~i~l 67 (70)
T cd05687 24 SEGIIPISEFSDDPIENGEDEVKVGDEVEVY------VLRVEDEEGNVVL 67 (70)
T ss_pred ceEEEEHHHhCccccCCHhHcCCCCCEEEEE------EEEEECCCCeEEE
Confidence 4577777766543 3569999999754 55555 3455554
No 77
>PRK07079 hypothetical protein; Provisional
Probab=27.38 E-value=7.7e+02 Score=27.27 Aligned_cols=42 Identities=12% Similarity=0.048 Sum_probs=27.7
Q ss_pred HHHHHHHHhhcCCCCCCCh---HHHHHHH----HHHhhhcCCceEEEEeCH
Q 007947 264 SAVIFGRELVNSPANVLTP---AVLAEEA----SKVASMYSDVLSATILDI 307 (583)
Q Consensus 264 ~~~~~aRdL~n~P~N~ltP---~~~A~~a----~~~~~~~~~~~~v~V~d~ 307 (583)
+.+.+.++|+..|+-.=.+ ..+++.. .+.+++.+ +++++++.
T Consensus 18 ~~~~~L~~LV~ipSvs~~~~~~~~~~~~l~~~~~~~l~~~G--~~~~~~~~ 66 (469)
T PRK07079 18 AFFADLARRVAYRTESQNPDRAPALRAYLTDEIAPALAALG--FTCRIVDN 66 (469)
T ss_pred HHHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHHHHHCC--CeEEEEec
Confidence 5689999999999854222 1344433 34667664 89998773
No 78
>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A.
Probab=26.66 E-value=38 Score=29.62 Aligned_cols=19 Identities=42% Similarity=0.744 Sum_probs=11.7
Q ss_pred CCCCCCCcEEEccCCcEEE
Q 007947 414 GTGMRPGDIITAANGKTIE 432 (583)
Q Consensus 414 g~A~rPGDVvts~~GkTVE 432 (583)
|--.|+||+|++-||+.|.
T Consensus 37 Gv~v~~GD~I~aInG~~v~ 55 (88)
T PF14685_consen 37 GVDVREGDYILAINGQPVT 55 (88)
T ss_dssp S----TT-EEEEETTEE-B
T ss_pred CCCCCCCCEEEEECCEECC
Confidence 5668999999999999874
No 79
>PF13275 S4_2: S4 domain; PDB: 1P9K_A.
Probab=26.38 E-value=50 Score=27.35 Aligned_cols=20 Identities=35% Similarity=0.802 Sum_probs=13.8
Q ss_pred CCCCCCCcEEEccCCcEEEee
Q 007947 414 GTGMRPGDIITAANGKTIEVN 434 (583)
Q Consensus 414 g~A~rPGDVvts~~GkTVEV~ 434 (583)
|.-.+|||+|+- +|.+++|.
T Consensus 46 g~Kl~~GD~V~~-~~~~~~Vv 65 (65)
T PF13275_consen 46 GKKLRPGDVVEI-DGEEYRVV 65 (65)
T ss_dssp S----SSEEEEE-TTEEEEEE
T ss_pred CCcCCCCCEEEE-CCEEEEEC
Confidence 678999999998 89998873
No 80
>TIGR03320 ygeY M20/DapE family protein YgeY. Members of this protein family, including the YgeY protein of Escherichia coli, typically are found in extended genomic regions associated with purine catabolism. Homologs include peptidases and deacylases of the M20/M25 /M40 and DapE/ArgE families. The function is unknown.
Probab=26.15 E-value=7.4e+02 Score=26.56 Aligned_cols=38 Identities=18% Similarity=0.220 Sum_probs=29.3
Q ss_pred HHHHHHHHHhhcCCCCCCChHHHHHHHHHHhhhcCCceEE
Q 007947 263 SSAVIFGRELVNSPANVLTPAVLAEEASKVASMYSDVLSA 302 (583)
Q Consensus 263 a~~~~~aRdL~n~P~N~ltP~~~A~~a~~~~~~~~~~~~v 302 (583)
.+.+.+.|+|++.|+-.-.-...++...+.+++++ +++
T Consensus 13 ~~~~~~~~~lv~i~s~s~~e~~~~~~l~~~l~~~G--~~~ 50 (395)
T TIGR03320 13 GDMIRFLRDLVAIPSESGDEKRVAERIKEEMEKLG--FDK 50 (395)
T ss_pred HHHHHHHHHHHcCCCCCCchHHHHHHHHHHHHHhC--CcE
Confidence 45678999999999966666677787788787775 764
No 81
>cd04454 S1_Rrp4_like S1_Rrp4_like: Rrp4-like, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Rrp4 protein, and Rrp40 and Csl4 proteins, also represented in this group, are subunits of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In Saccharomyces cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure".
Probab=23.89 E-value=96 Score=25.75 Aligned_cols=25 Identities=24% Similarity=0.457 Sum_probs=19.7
Q ss_pred CCCCCCcEEEccCCcEEEeecCCccCceehh
Q 007947 415 TGMRPGDIITAANGKTIEVNNTDAEGRLTLA 445 (583)
Q Consensus 415 ~A~rPGDVvts~~GkTVEV~NTDAEGRLvLA 445 (583)
.-+++||.|. ..|.+.|.+++.+|.
T Consensus 49 ~~~~~GD~i~------~~V~~~~~~~~i~LS 73 (82)
T cd04454 49 KSLQPGDLIL------AKVISLGDDMNVLLT 73 (82)
T ss_pred hcCCCCCEEE------EEEEEeCCCCCEEEE
Confidence 4589999995 578888888887764
No 82
>PF13973 DUF4222: Domain of unknown function (DUF4222)
Probab=23.79 E-value=72 Score=25.31 Aligned_cols=26 Identities=31% Similarity=0.599 Sum_probs=23.0
Q ss_pred CCCCcEEEccCCcEEEeecCCccCcee
Q 007947 417 MRPGDIITAANGKTIEVNNTDAEGRLT 443 (583)
Q Consensus 417 ~rPGDVvts~~GkTVEV~NTDAEGRLv 443 (583)
.+|||+.+=.+|-+|+|.-.|.+ |.+
T Consensus 3 i~~g~~y~D~~G~~V~I~~~~~~-rV~ 28 (53)
T PF13973_consen 3 IQPGDIYRDKRGYPVTIISVDFN-RVT 28 (53)
T ss_pred cCCCCEEECCCCCEEEEEEEECC-EEE
Confidence 57999999999999999999988 643
No 83
>TIGR01886 dipeptidase dipeptidase PepV. This model represents a small clade of dipeptidase enzymes which are members of the larger M25 subfamily of metalloproteases. Two characterized enzymes are included in the seed. One, from Lactococcus lactis has been shown to act on a wide range of dipeptides, but not larger peptides. The enzyme from Lactobacillus delbrueckii was originally characterized as a Xaa-His dipeptidase, specifically a carnosinase (beta-Ala-His) by complementation of an E. coli mutant. Further study, including the crystallization of the enzyme, has shown it to also be a non-specific dipeptidase. This group also includes enzymes from Streptococcus and Enterococcus.
Probab=23.68 E-value=9.5e+02 Score=26.71 Aligned_cols=42 Identities=12% Similarity=-0.005 Sum_probs=28.8
Q ss_pred HHHHHHHHHhhcCCCCCC------------ChHHHHHHHHHHhhhcCCceEEEEeC
Q 007947 263 SSAVIFGRELVNSPANVL------------TPAVLAEEASKVASMYSDVLSATILD 306 (583)
Q Consensus 263 a~~~~~aRdL~n~P~N~l------------tP~~~A~~a~~~~~~~~~~~~v~V~d 306 (583)
.+-+.+.++|+..|+=.- .....++...+.+++.+ +++++++
T Consensus 13 ~~~~~~l~~lv~ipS~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~G--~~~~~~~ 66 (466)
T TIGR01886 13 DALLEDLEELLRIDSSEDLENATEEYPFGPGPVDALTKFLSFAERDG--FTTKNFD 66 (466)
T ss_pred HHHHHHHHHHhCCCCcCCCCCCCccCCCChhHHHHHHHHHHHHHHCC--CeEEEec
Confidence 356789999999998421 12334555567777775 8988866
No 84
>cd02749 Macro Macro domain, a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes.
Probab=22.08 E-value=5.9e+02 Score=23.00 Aligned_cols=103 Identities=13% Similarity=0.112 Sum_probs=52.2
Q ss_pred ecCCccc-ccccEEEEEEecCCCCCCCCcccchhHHHHHHHHhhHHHHHHHhcCC-CC-CCCCcEEEEecCCCC-ccEEE
Q 007947 84 KEVDVVE-WKGDILAVGVTEKDMGKDDNSKFQNSILKKLDAQLGGLLSEASSEED-FT-GKAGQSTVIRLPGIG-SKRVG 159 (583)
Q Consensus 84 ~~~~~~~-~~~D~LVVgV~e~~~~~~~~s~~~~~~~~~ld~~l~g~Ls~~~~~~~-f~-Gk~Ge~~~l~~~~~~-~~rvl 159 (583)
...|..+ .+.|++|-++.+.... .......+.+..+..+.+..+... .. -+.|+.......+.+ .+.|+
T Consensus 5 ~~GDi~~~~~~d~IVn~~n~~~~~-------g~gi~~ai~~~~g~~~~~~~~~~~~~~~~~~G~~~~t~~~~~~~~~~vi 77 (147)
T cd02749 5 VSGDITKPLGSDAIVNAANSSGRD-------GGGVNLAISKKAGKELEEESKKLRKELELQVGEAVLTKGYNLDGAKYLI 77 (147)
T ss_pred EECCCCCCCCCCEEEeCCCCCCCC-------CChHHHHHHHHhCHHHHHHHHHHhcccCCCCCCEEECcCCCCCcCCEEE
Confidence 5566777 7889998887665321 123344455444444433333221 11 268887665443333 45544
Q ss_pred EEecCCC-C-C----ChHHHHHHHHHHHHHHHHcccCcEEE
Q 007947 160 LIGLGQS-A-S----RAGDFRSLGESVAAAAKAAQASNVAV 194 (583)
Q Consensus 160 lVGLGk~-~-~----~~~~~r~~~~a~a~~~k~~~~~~v~i 194 (583)
-+ .+.. . . +.+.+++.-......+.+.+.+++++
T Consensus 78 h~-~~p~~~~~~~~~~~~~l~~a~~~~L~~~~~~~~~sIa~ 117 (147)
T cd02749 78 HI-VGPKYNQGNNKAAFELLKNAYENCLKEAEEKGIKSIAF 117 (147)
T ss_pred Ee-CCCCCCCCCCchHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 33 3332 1 1 23444444445555555666666554
No 85
>TIGR01713 typeII_sec_gspC general secretion pathway protein C. This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=21.68 E-value=47 Score=34.48 Aligned_cols=18 Identities=39% Similarity=0.721 Sum_probs=15.7
Q ss_pred CCCCCCcEEEccCCcEEE
Q 007947 415 TGMRPGDIITAANGKTIE 432 (583)
Q Consensus 415 ~A~rPGDVvts~~GkTVE 432 (583)
..+||||||++.||+.|.
T Consensus 207 aGLr~GDvIv~ING~~i~ 224 (259)
T TIGR01713 207 SGLQDGDIAVALNGLDLR 224 (259)
T ss_pred cCCCCCCEEEEECCEEcC
Confidence 348999999999999875
No 86
>KOG1349 consensus Gpi-anchor transamidase [Posttranslational modification, protein turnover, chaperones]
Probab=21.18 E-value=1.7e+02 Score=30.70 Aligned_cols=53 Identities=23% Similarity=0.478 Sum_probs=43.6
Q ss_pred hHHHHHHHHHHHHhcCCCceEEEEEEeecccCC-CCCCCCCCcEEEcc------CCcEEEee
Q 007947 380 GAAAVLGAAKAIGQIKPPGVEVHFIVAACENMI-SGTGMRPGDIITAA------NGKTIEVN 434 (583)
Q Consensus 380 GAAaVlga~~aia~lklp~vnV~~ii~~~ENm~-sg~A~rPGDVvts~------~GkTVEV~ 434 (583)
=.|.|+++-+.+-+|+.|.-+| |+-++|||+ +..--+||-|.-.. -|+-|||.
T Consensus 45 H~aNvl~~YrsvKrlGipDsqI--ilmladd~acn~RN~~pg~Vy~n~~~~~nlygd~vevd 104 (309)
T KOG1349|consen 45 HVANVLSVYRSVKRLGIPDSQI--ILMLADDMACNSRNPRPGTVYNNENHALNLYGDDVEVD 104 (309)
T ss_pred HHHHHHHHHHHHHHcCCCcccE--EEEeccccccccCCCCCcceeccccccccccCCcceee
Confidence 3589999999999999995555 567889997 45668999999888 78889884
No 87
>PRK07205 hypothetical protein; Provisional
Probab=20.37 E-value=1.1e+03 Score=25.66 Aligned_cols=117 Identities=19% Similarity=0.166 Sum_probs=62.3
Q ss_pred HHHHHHHHHhhcCCCCCCCh----------HHHHHHHHHHhhhcCCceEEEEeCHHHHHHcCCCchhhhc-ccCCCCCeE
Q 007947 263 SSAVIFGRELVNSPANVLTP----------AVLAEEASKVASMYSDVLSATILDIEKCKELKMGSYLGVA-AASANLPHF 331 (583)
Q Consensus 263 a~~~~~aRdL~n~P~N~ltP----------~~~A~~a~~~~~~~~~~~~v~V~d~~~l~~~gmg~llaV~-~GS~~pPrl 331 (583)
.+.+.+-|+|+..|+-.-.+ ...++...+..++++ +++++.+. +-.. ++ .|+..|+-+
T Consensus 11 ~~~~~~l~~lv~i~S~s~~~~~~~~~~~~~~~~~~~~~~~l~~~g--~~~~~~~~------~~~~---~~~~g~~~~~ll 79 (444)
T PRK07205 11 DACVAAIKTLVSYPSVLNEGENGTPFGQAIQDVLEATLDLCQGLG--FKTYLDPK------GYYG---YAEIGQGEELLA 79 (444)
T ss_pred HHHHHHHHHHcccccccCCCcCCCCCchhHHHHHHHHHHHHHhCC--CEEEEcCC------CeEE---EEEecCCCcEEE
Confidence 45678888999999733222 345555556667664 88876432 2111 22 254444444
Q ss_pred EEEEEc--CCCCCC---CceE-------EEEecceeecCCCCCCCCCCcccccccccccchHHHHHHHHHHHHhcCCC-c
Q 007947 332 IHLCYK--PPGGSA---KIKL-------ALVGKGLTFDSGGYNIKTGPGCLIENMKYDMGGAAAVLGAAKAIGQIKPP-G 398 (583)
Q Consensus 332 i~l~Y~--g~~~~~---~~~i-------~LVGKGiTFDsGG~slKp~~~~~M~~MK~DM~GAAaVlga~~aia~lklp-~ 398 (583)
+.=+|. |.++.. .+|. -|-|+|. -+|| +|-|+++-+++++-+.+.+ +
T Consensus 80 l~gH~DvVp~~~~~~W~~~Pf~~~v~dg~lyGRGa-----------------~DmK---gglaa~l~Al~~l~~~~~~~~ 139 (444)
T PRK07205 80 ILCHLDVVPEGDLSDWQTPPFEAVEKDGCLFGRGT-----------------QDDK---GPSMAALYAVKALLDAGVQFN 139 (444)
T ss_pred EEEeeccCCCCCcccCCCCCCceEEECCEEEECCc-----------------ccCc---HHHHHHHHHHHHHHHcCCCCC
Confidence 433333 211110 1121 2555552 1233 6799999999999777532 1
Q ss_pred eEEEEEEeeccc
Q 007947 399 VEVHFIVAACEN 410 (583)
Q Consensus 399 vnV~~ii~~~EN 410 (583)
.+|+.++..=|=
T Consensus 140 ~~i~l~~~~dEE 151 (444)
T PRK07205 140 KRIRFIFGTDEE 151 (444)
T ss_pred CcEEEEEECCcc
Confidence 566666555443
No 88
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=20.21 E-value=86 Score=34.97 Aligned_cols=79 Identities=24% Similarity=0.291 Sum_probs=60.8
Q ss_pred HHhcCCCceEEEEEEeecccCCCCCCCCCCcEEEccCCcEEEeecCCccCceehhhhhhHHHhcCCCeEEEecchhHHHH
Q 007947 391 IGQIKPPGVEVHFIVAACENMISGTGMRPGDIITAANGKTIEVNNTDAEGRLTLADALIYACNQGVDKVIDLATLTGACV 470 (583)
Q Consensus 391 ia~lklp~vnV~~ii~~~ENm~sg~A~rPGDVvts~~GkTVEV~NTDAEGRLvLADaL~Ya~~~~p~~iIDiATLTGA~~ 470 (583)
..+|.+| |+=.-+-=+=+++++| ..-+|.||.+.-|-||.=. |.||.|+||-|. -|+-=+|||-
T Consensus 296 ~G~l~~P-V~G~il~rFG~~~~gg-~~wkG~vi~a~~Ga~V~A~---AdG~VvyA~~l~---GYG~vvIldh-------- 359 (420)
T COG4942 296 RGQLAWP-VTGRILRRFGQADGGG-LRWKGMVIGASAGATVKAI---ADGRVVYADWLR---GYGLVVILDH-------- 359 (420)
T ss_pred cCCcCCC-CCCcHHHHhcccCCCC-ccccceEEecCCCCeeeee---cCceEEechhhc---cCceEEEEEc--------
Confidence 3566666 5433333456888877 6668999999999999855 999999999873 4677788886
Q ss_pred HhhCCCeEEEeeCCHHHH
Q 007947 471 VALGPSVAGAFTPSDDLA 488 (583)
Q Consensus 471 vALG~~~agvfsn~~~l~ 488 (583)
|+.|-.||++++.+.
T Consensus 360 ---G~gy~slyg~~~~i~ 374 (420)
T COG4942 360 ---GGGYHSLYGGNQSIL 374 (420)
T ss_pred ---CCccEEEecccceee
Confidence 999999999988643
No 89
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=20.13 E-value=4e+02 Score=24.35 Aligned_cols=47 Identities=34% Similarity=0.361 Sum_probs=33.6
Q ss_pred CCccEEEEEecCCCCCChHHHHHHHHHHHHHHHHcccCcEEEEecCCCCCCchhHHHHHHHHHHHH
Q 007947 153 IGSKRVGLIGLGQSASRAGDFRSLGESVAAAAKAAQASNVAVVLASSDGLSDESKLTAASAVASGT 218 (583)
Q Consensus 153 ~~~~rvllVGLGk~~~~~~~~r~~~~a~a~~~k~~~~~~v~i~l~~~~~~~~~~~~~~~~a~aeG~ 218 (583)
...++++++|-|. ++.+++..+.+.+.+++.+.-.+ .+.++.+++-+
T Consensus 10 l~~~~vlviGaGg----------~ar~v~~~L~~~g~~~i~i~nRt---------~~ra~~l~~~~ 56 (135)
T PF01488_consen 10 LKGKRVLVIGAGG----------AARAVAAALAALGAKEITIVNRT---------PERAEALAEEF 56 (135)
T ss_dssp GTTSEEEEESSSH----------HHHHHHHHHHHTTSSEEEEEESS---------HHHHHHHHHHH
T ss_pred cCCCEEEEECCHH----------HHHHHHHHHHHcCCCEEEEEECC---------HHHHHHHHHHc
Confidence 4568999999994 45567788888899988886543 23456666655
Done!