Query 007947
Match_columns 583
No_of_seqs 214 out of 1581
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 14:24:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007947.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007947hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h8g_F Cytosol aminopeptidase; 100.0 6E-147 2E-151 1192.0 54.7 489 79-581 1-494 (497)
2 3jru_B Probable cytosol aminop 100.0 2E-146 6E-151 1185.4 54.9 485 77-582 1-489 (490)
3 1gyt_A Cytosol aminopeptidase; 100.0 7E-146 2E-150 1191.5 54.5 490 79-582 1-497 (503)
4 3kr4_A M17 leucyl aminopeptida 100.0 3E-145 1E-149 1174.6 46.3 484 79-581 27-520 (528)
5 3pei_A Cytosol aminopeptidase; 100.0 8E-145 3E-149 1171.7 44.8 474 79-581 2-478 (486)
6 3kzw_A Cytosol aminopeptidase; 100.0 4E-144 1E-148 1167.0 44.7 489 69-581 17-515 (515)
7 1lam_A Leucine aminopeptidase; 100.0 8E-142 3E-146 1152.7 49.4 466 94-583 2-484 (484)
8 3ij3_A Cytosol aminopeptidase; 100.0 8E-133 3E-137 1070.4 38.3 427 120-581 50-480 (482)
9 2hc9_A Leucine aminopeptidase 100.0 1E-125 4E-130 1022.4 38.9 467 78-582 3-484 (491)
10 4efd_A Aminopeptidase; structu 100.0 6E-121 2E-125 983.2 40.2 318 256-581 197-522 (522)
11 3gb0_A Peptidase T; NP_980509. 83.2 10 0.00034 38.7 12.4 129 265-409 8-141 (373)
12 4h2k_A Succinyl-diaminopimelat 81.9 4 0.00014 40.2 8.5 42 263-306 6-47 (269)
13 1q7l_A Aminoacylase-1; catalys 79.5 24 0.00084 32.8 12.8 124 266-410 13-148 (198)
14 3ct9_A Acetylornithine deacety 76.1 25 0.00086 35.7 12.7 123 264-410 12-138 (356)
15 3rza_A Tripeptidase; phosphory 75.8 14 0.00047 38.2 10.7 129 266-409 27-162 (396)
16 1cg2_A Carboxypeptidase G2; me 74.8 20 0.00069 36.8 11.6 127 263-410 19-154 (393)
17 1vhe_A Aminopeptidase/glucanas 72.9 47 0.0016 34.1 13.8 59 265-333 9-67 (373)
18 2pok_A Peptidase, M20/M25/M40 72.7 29 0.00099 36.7 12.5 120 264-410 45-182 (481)
19 3pfo_A Putative acetylornithin 68.2 33 0.0011 35.5 11.5 42 263-306 26-67 (433)
20 1fno_A Peptidase T; metallo pe 67.8 45 0.0015 34.4 12.4 135 266-410 5-174 (417)
21 3khx_A Putative dipeptidase sa 67.4 20 0.00067 38.5 9.9 122 263-410 34-173 (492)
22 1xmb_A IAA-amino acid hydrolas 67.2 31 0.0011 35.8 11.1 121 263-410 28-152 (418)
23 1ysj_A Protein YXEP; M20 famil 65.9 17 0.00057 37.7 8.6 121 264-410 33-158 (404)
24 2kjp_A Uncharacterized protein 65.4 2.2 7.6E-05 35.5 1.5 26 407-432 8-33 (91)
25 3tx8_A Succinyl-diaminopimelat 65.0 47 0.0016 33.5 11.7 119 266-411 16-138 (369)
26 2d90_A PDZ domain containing p 64.0 3.7 0.00012 34.2 2.6 26 407-432 37-63 (102)
27 3i18_A LMO2051 protein; alpha- 63.9 2.8 9.6E-05 35.1 1.8 33 397-432 7-39 (100)
28 2dls_A PDZ-rhogef, RHO guanine 63.2 4.1 0.00014 33.4 2.7 31 399-432 31-62 (93)
29 2hga_A Conserved protein MTH13 62.3 3.3 0.00011 36.6 2.1 32 398-432 26-57 (125)
30 1vgy_A Succinyl-diaminopimelat 62.2 47 0.0016 34.0 11.2 124 266-411 9-139 (393)
31 3isz_A Succinyl-diaminopimelat 60.3 30 0.001 34.8 9.2 126 265-411 5-136 (377)
32 2eaq_A LIM domain only protein 59.3 2.6 9.1E-05 34.1 0.8 31 399-432 30-61 (90)
33 2fvg_A Endoglucanase; TM1049, 59.1 21 0.00072 36.1 7.8 56 268-333 3-58 (340)
34 3bpu_A Membrane-associated gua 59.0 4.7 0.00016 32.5 2.3 24 409-432 35-58 (88)
35 2kl1_A YLBL protein; structure 58.9 3.4 0.00012 34.3 1.5 26 407-432 12-37 (94)
36 3t68_A Succinyl-diaminopimelat 58.5 20 0.00068 35.0 7.2 121 265-410 8-138 (268)
37 2v90_A PDZ domain-containing p 56.9 2.4 8.3E-05 34.9 0.2 31 399-432 32-63 (96)
38 1mfg_A ERB-B2 interacting prot 56.3 7.2 0.00024 31.9 3.0 31 399-432 37-67 (95)
39 2edz_A PDZ domain-containing p 55.9 4 0.00014 34.9 1.4 26 407-432 45-71 (114)
40 2jxo_A Ezrin-radixin-moesin-bi 55.9 2.6 9E-05 34.8 0.2 31 399-432 35-66 (98)
41 2uzc_A Human pdlim5, PDZ and L 55.8 2.7 9.4E-05 33.9 0.3 31 399-432 29-60 (88)
42 2kv8_A RGS12, regulator of G-p 55.7 5 0.00017 32.0 1.9 25 408-432 31-56 (83)
43 3dlj_A Beta-Ala-His dipeptidas 55.2 1.2E+02 0.0041 32.0 13.3 131 263-411 25-179 (485)
44 2pkt_A PDZ and LIM domain prot 55.2 3.4 0.00012 33.6 0.8 31 399-432 29-60 (91)
45 2pa1_A PDZ and LIM domain prot 54.5 2.7 9.3E-05 33.9 0.1 31 399-432 28-59 (87)
46 2pzd_A Serine protease HTRA2; 54.2 2.8 9.5E-05 35.7 0.1 32 398-432 36-68 (113)
47 1lfw_A PEPV; hydrolase, dipept 53.2 72 0.0025 33.4 11.0 123 264-410 15-154 (470)
48 2gre_A Deblocking aminopeptida 52.8 97 0.0033 31.3 11.5 58 265-332 8-65 (349)
49 2w4f_A Protein LAP4; structura 52.3 2.7 9.3E-05 34.5 -0.3 32 398-432 35-67 (97)
50 1g9o_A NHE-RF; PDZ domain, com 52.3 3.4 0.00012 33.6 0.3 31 399-432 29-60 (91)
51 1spv_A Putative polyprotein/ph 52.2 1.5E+02 0.0051 27.6 12.0 110 79-197 3-121 (184)
52 1wh1_A KIAA1095 protein; PDZ d 51.9 3.6 0.00012 35.8 0.5 32 398-432 49-82 (124)
53 1qav_A Alpha-1 syntrophin (res 51.8 3.3 0.00011 33.6 0.2 31 399-432 32-64 (90)
54 3id1_A Regulator of sigma E pr 51.5 3.1 0.00011 34.7 -0.0 26 407-432 9-35 (95)
55 1x5n_A Harmonin; PDZ domain, u 51.2 8.2 0.00028 32.7 2.6 31 399-432 43-74 (114)
56 2h2b_A Tight junction protein 51.0 8.6 0.00029 32.1 2.7 31 399-432 41-71 (107)
57 2yt7_A Amyloid beta A4 precurs 50.8 8.9 0.00031 31.9 2.8 46 403-456 40-87 (101)
58 2ego_A General receptor for ph 50.0 4.6 0.00016 33.3 0.8 31 399-432 39-70 (96)
59 2cs5_A Tyrosine-protein phosph 49.7 8.1 0.00028 33.0 2.4 27 406-432 47-76 (119)
60 1ujv_A Membrane associated gua 49.7 7.1 0.00024 32.4 2.0 31 398-432 33-63 (96)
61 3cyy_A Tight junction protein 49.1 4.1 0.00014 33.0 0.3 25 408-432 31-57 (92)
62 2p3w_A Probable serine proteas 48.8 3.7 0.00013 34.9 0.0 32 398-432 36-68 (112)
63 2eeh_A PDZ domain-containing p 48.8 3.5 0.00012 34.3 -0.1 31 399-432 38-69 (100)
64 2q3g_A PDZ and LIM domain prot 48.5 3.7 0.00013 33.2 0.0 31 399-432 29-60 (89)
65 2i6v_A General secretion pathw 48.5 5.4 0.00018 32.4 1.0 25 408-432 24-52 (87)
66 2yuy_A RHO GTPase activating p 48.2 2.4 8.2E-05 37.1 -1.3 25 408-432 69-94 (126)
67 2l97_A HTRA, putative serine p 47.7 8.9 0.0003 33.9 2.4 27 406-432 63-89 (134)
68 1ihj_A INAD; intermolecular di 47.4 4.3 0.00015 33.4 0.2 27 406-432 43-71 (98)
69 1vb7_A PDZ and LIM domain 2; P 47.4 3.5 0.00012 33.9 -0.3 25 408-432 38-63 (94)
70 2i4s_A General secretion pathw 46.5 5.9 0.0002 33.4 1.0 25 408-432 42-70 (105)
71 2he4_A Na(+)/H(+) exchange reg 46.2 3.8 0.00013 33.2 -0.3 30 399-431 30-60 (90)
72 2qkv_A Inactivation-NO-after-p 46.1 6.1 0.00021 32.6 1.0 25 408-432 39-65 (96)
73 1n7t_A 99-MER peptide of densi 46.1 8.5 0.00029 32.0 1.9 27 406-432 49-75 (103)
74 1x5q_A LAP4 protein; PDZ domai 45.4 4 0.00014 34.4 -0.3 32 398-432 47-79 (110)
75 2ehr_A INAD-like protein; PDZ 45.4 12 0.00043 31.7 2.9 31 399-432 52-84 (117)
76 2jil_A GRIP1 protein, glutamat 45.1 4.3 0.00015 33.3 -0.1 25 408-432 40-66 (97)
77 2vwr_A Ligand of NUMB protein 44.9 4.2 0.00014 33.3 -0.3 31 399-432 31-63 (95)
78 1uez_A KIAA1526 protein; PDZ d 44.8 3.8 0.00013 34.1 -0.5 31 399-432 37-68 (101)
79 1v5l_A PDZ and LIM domain 3; a 44.7 5.8 0.0002 33.1 0.6 26 407-432 36-62 (103)
80 2fcf_A Multiple PDZ domain pro 43.9 4.4 0.00015 33.6 -0.2 31 399-432 41-73 (103)
81 2la8_A Inactivation-NO-after-p 43.9 5.5 0.00019 33.9 0.3 26 407-432 32-59 (106)
82 3ife_A Peptidase T; metallopep 43.8 2.5E+02 0.0086 29.0 13.3 136 264-410 28-201 (434)
83 2dkr_A LIN-7 homolog B; LIN-7B 43.2 3.2 0.00011 33.7 -1.2 31 399-432 32-64 (93)
84 1uep_A Membrane associated gua 43.0 11 0.00039 31.3 2.2 31 399-432 36-68 (103)
85 2rcz_A Tight junction protein 42.9 12 0.00041 29.1 2.2 16 417-432 40-55 (81)
86 1te0_A Protease DEGS; two doma 42.8 12 0.00043 37.7 2.9 32 398-432 245-277 (318)
87 2edp_A Fragment, shroom family 42.8 4 0.00014 34.1 -0.7 26 406-431 41-68 (100)
88 2q9v_A Membrane-associated gua 42.6 5.7 0.00019 32.1 0.2 31 399-432 29-61 (90)
89 2zog_A Cytosolic non-specific 42.4 1.9E+02 0.0066 30.1 12.3 125 263-410 20-171 (479)
90 2opg_A Multiple PDZ domain pro 42.3 4.8 0.00016 33.1 -0.3 31 399-432 32-64 (98)
91 1y0y_A FRV operon protein FRVX 41.9 1.3E+02 0.0043 30.4 10.4 57 266-334 9-66 (353)
92 3khf_A Microtubule-associated 41.6 5 0.00017 33.1 -0.3 25 408-432 42-67 (99)
93 2qbw_A PDZ-fibronectin fusion 41.5 15 0.00051 33.8 3.0 31 399-432 26-56 (195)
94 2i1n_A Discs, large homolog 3; 41.5 5.3 0.00018 33.1 -0.1 31 399-432 36-68 (102)
95 2i04_A Membrane-associated gua 41.5 5 0.00017 32.0 -0.3 31 399-432 27-59 (85)
96 2vz5_A TAX1-binding protein 3; 41.3 6.1 0.00021 35.3 0.2 32 398-432 65-97 (139)
97 3r68_A Na(+)/H(+) exchange reg 41.2 5.2 0.00018 32.6 -0.2 25 408-432 37-62 (95)
98 2fe5_A Presynaptic protein SAP 41.0 5.2 0.00018 32.5 -0.3 31 399-432 35-67 (94)
99 2vsp_A PDZ domain-containing p 40.9 4.3 0.00015 33.0 -0.8 24 409-432 36-60 (91)
100 2dx6_A Hypothetical protein TT 40.8 2E+02 0.0069 25.8 18.3 110 79-196 2-112 (159)
101 2hc8_A PACS, cation-transporti 40.8 14 0.00049 32.0 2.6 64 387-468 2-65 (113)
102 2edv_A FERM and PDZ domain-con 40.3 9.1 0.00031 31.6 1.2 27 406-432 37-63 (96)
103 2qg1_A Multiple PDZ domain pro 39.7 4.5 0.00015 32.8 -0.8 31 399-432 31-63 (92)
104 2yub_A LIMK-2, LIM domain kina 39.5 6 0.00021 34.4 -0.1 23 410-432 56-79 (118)
105 2wyr_A Cobalt-activated peptid 39.3 1.4E+02 0.0046 29.8 10.0 55 266-333 5-59 (332)
106 1y8t_A Hypothetical protein RV 39.1 18 0.0006 36.6 3.3 26 407-432 249-275 (324)
107 3qik_A Phosphatidylinositol 3, 38.9 2.6 8.7E-05 36.5 -2.5 29 407-435 46-75 (101)
108 2koj_A Partitioning defective 38.7 7.2 0.00024 32.8 0.3 45 399-454 41-87 (111)
109 3ngh_A PDZ domain-containing p 38.7 6.3 0.00022 32.9 -0.1 25 408-432 34-59 (106)
110 2zpm_A Regulator of sigma E pr 38.3 10 0.00035 30.6 1.2 25 408-432 12-37 (91)
111 2rb7_A Peptidase, M20/M25/M40 37.9 35 0.0012 34.7 5.4 40 264-305 7-49 (364)
112 3io1_A Aminobenzoyl-glutamate 37.3 2.2E+02 0.0077 29.6 11.8 41 263-305 14-54 (445)
113 2vsv_A Rhophilin-2; scaffold p 37.3 6.7 0.00023 33.8 -0.2 17 416-432 61-77 (109)
114 2ejy_A 55 kDa erythrocyte memb 37.2 6.6 0.00023 33.1 -0.2 25 408-432 44-70 (97)
115 2iwq_A Multiple PDZ domain pro 37.2 6.5 0.00022 34.3 -0.2 32 398-432 60-93 (123)
116 2jre_A C60-1 PDZ domain peptid 37.2 5 0.00017 33.7 -1.0 31 399-432 46-78 (108)
117 1v5q_A GRIP1 homolog, glutamat 37.0 5.5 0.00019 34.5 -0.7 45 399-454 47-93 (122)
118 1d5g_A Human phosphatase HPTP1 36.9 6.6 0.00023 32.1 -0.2 31 399-432 35-67 (96)
119 3stj_A Protease DEGQ; serine p 36.6 14 0.00047 38.1 2.1 27 406-432 269-296 (345)
120 3sfj_A TAX1-binding protein 3; 36.1 8.2 0.00028 32.0 0.2 32 398-432 46-78 (104)
121 2kjd_A Sodium/hydrogen exchang 36.1 8.2 0.00028 33.3 0.2 52 399-462 35-87 (128)
122 3pfe_A Succinyl-diaminopimelat 36.1 1.1E+02 0.0039 32.1 9.3 35 376-410 129-164 (472)
123 2z17_A Pleckstrin homology SEC 36.0 4.5 0.00015 33.8 -1.5 31 399-432 50-81 (104)
124 1wf7_A Enigma homologue protei 35.9 6.1 0.00021 32.9 -0.6 16 417-432 47-62 (103)
125 1uf1_A KIAA1526 protein; PDZ d 35.5 6.1 0.00021 34.4 -0.7 31 399-432 48-79 (128)
126 2jik_A Synaptojanin-2 binding 35.2 7.7 0.00026 32.1 -0.1 31 399-432 39-71 (101)
127 2awx_A Synapse associated prot 35.1 8.8 0.0003 32.1 0.2 31 399-432 35-67 (105)
128 1uhp_A Hypothetical protein KI 35.0 8.9 0.0003 32.2 0.2 31 399-432 43-75 (107)
129 2o2t_A Multiple PDZ domain pro 35.0 6.3 0.00022 33.6 -0.7 27 406-432 55-83 (117)
130 1n7e_A AMPA receptor interacti 34.5 6.1 0.00021 32.5 -0.8 31 399-432 32-64 (97)
131 3axa_A Afadin, nectin-3, prote 34.5 7.8 0.00027 32.4 -0.2 31 399-432 40-72 (106)
132 1q7x_A PDZ2B domain of PTP-BAS 34.5 9.4 0.00032 32.0 0.4 31 399-432 44-76 (108)
133 2eno_A Synaptojanin-2-binding 34.4 11 0.00036 32.4 0.7 31 399-432 49-81 (120)
134 1rgw_A ZAsp protein; PDZ, cyph 34.3 10 0.00036 30.0 0.6 31 399-432 27-58 (85)
135 2fne_A Multiple PDZ domain pro 34.1 7.8 0.00027 33.5 -0.3 25 408-432 61-87 (117)
136 3n5f_A L-carbamoylase, N-carba 34.0 1.9E+02 0.0066 29.5 10.4 105 266-410 8-125 (408)
137 2dlu_A INAD-like protein; PDZ 33.9 7.7 0.00026 32.7 -0.3 31 399-432 40-72 (111)
138 2kom_A Partitioning defective 33.9 7.9 0.00027 33.5 -0.3 45 399-454 60-106 (121)
139 2r4h_A Membrane-associated gua 33.9 12 0.0004 31.9 0.8 31 399-432 51-83 (112)
140 2eeg_A PDZ and LIM domain prot 33.9 10 0.00035 30.9 0.5 24 409-432 41-65 (94)
141 1m5z_A GRIP, AMPA receptor int 33.7 12 0.00042 30.1 0.9 31 399-432 34-65 (91)
142 1q3o_A Shank1; PDZ, GKAP, pept 33.5 9.9 0.00034 31.9 0.3 32 398-432 46-78 (109)
143 1wf8_A Neurabin-I; PDZ domain, 33.3 8.3 0.00029 32.3 -0.2 26 407-432 47-74 (107)
144 1um1_A KIAA1849 protein, RSGI 33.2 8.2 0.00028 32.5 -0.2 32 398-432 37-70 (110)
145 1kwa_A Hcask/LIN-2 protein; PD 33.2 9.1 0.00031 31.1 0.0 27 406-432 31-59 (88)
146 2e7k_A Maguk P55 subfamily mem 33.0 12 0.00042 30.5 0.8 26 406-431 35-62 (91)
147 3tsv_A Tight junction protein 33.0 10 0.00035 33.1 0.3 31 399-432 53-84 (124)
148 3nfk_A Tyrosine-protein phosph 32.9 10 0.00036 31.6 0.4 26 407-432 50-78 (107)
149 1ueq_A Membrane associated gua 32.8 8.4 0.00029 33.3 -0.2 31 399-432 46-78 (123)
150 2f5y_A Regulator of G-protein 32.6 13 0.00044 30.1 0.9 16 417-432 42-57 (91)
151 3e17_A Tight junction protein 32.6 26 0.00087 28.3 2.7 25 408-432 29-55 (88)
152 2djt_A Unnamed protein product 32.4 6.1 0.00021 32.9 -1.2 31 399-432 40-72 (104)
153 2k52_A Uncharacterized protein 32.3 37 0.0013 27.1 3.6 39 400-445 28-69 (80)
154 1wha_A KIAA0147 protein, scrib 32.1 8.2 0.00028 32.2 -0.4 31 399-432 40-72 (105)
155 3qe1_A Sorting nexin-27, G pro 31.9 9.4 0.00032 31.9 -0.1 26 407-432 50-76 (107)
156 3kzd_A TIAM-1, T-lymphoma inva 31.8 9.9 0.00034 32.1 0.0 32 399-433 37-69 (94)
157 3i4w_A Disks large homolog 4; 31.7 10 0.00035 31.3 0.1 31 399-432 37-69 (104)
158 2iwn_A Multiple PDZ domain pro 31.7 8.6 0.0003 31.2 -0.4 31 399-432 35-67 (97)
159 1wif_A RSGI RUH-020, riken cDN 31.6 16 0.00055 32.3 1.4 48 406-461 55-104 (126)
160 3o4v_A MTA/SAH nucleosidase; m 31.4 2.2E+02 0.0074 26.8 9.6 91 378-502 52-142 (234)
161 1wi2_A Riken cDNA 2700099C19; 31.3 7.9 0.00027 32.4 -0.7 31 399-432 43-74 (104)
162 2gzv_A PRKCA-binding protein; 31.2 11 0.00038 32.3 0.2 31 399-432 52-84 (114)
163 1ylo_A Hypothetical protein SF 31.0 3.4E+02 0.012 26.8 11.5 59 267-336 7-65 (348)
164 1tp5_A Presynaptic density pro 30.7 9.1 0.00031 32.7 -0.4 31 399-432 40-72 (119)
165 1uew_A Membrane associated gua 30.7 14 0.00049 31.3 0.9 30 399-431 45-76 (114)
166 1v1h_A Fibritin, fiber protein 30.2 13 0.00044 32.3 0.5 9 351-359 60-68 (103)
167 2lob_A Golgi-associated PDZ an 36.1 11 0.00038 32.3 0.0 25 408-432 61-87 (112)
168 2csj_A TJP2 protein; PDZ domai 29.9 11 0.00038 32.1 0.0 31 399-432 48-78 (117)
169 2kij_A Copper-transporting ATP 29.8 51 0.0017 28.9 4.4 66 387-468 8-77 (124)
170 1x6d_A Interleukin-16; PDZ dom 29.7 5.8 0.0002 34.0 -1.8 31 399-432 44-76 (119)
171 2iwo_A Multiple PDZ domain pro 29.7 10 0.00035 32.8 -0.3 25 408-432 61-87 (120)
172 4e34_A Golgi-associated PDZ an 29.5 19 0.00065 28.7 1.4 27 406-432 34-62 (87)
173 2d8i_A T-cell lymphoma invasio 29.2 9.4 0.00032 33.1 -0.6 27 406-432 50-77 (114)
174 1uit_A Human discs large 5 pro 29.2 7.9 0.00027 33.0 -1.1 31 399-432 44-75 (117)
175 1wfv_A Membrane associated gua 29.0 17 0.00059 29.8 1.1 24 409-432 45-70 (103)
176 4fln_A Protease DO-like 2, chl 28.7 25 0.00087 38.7 2.6 34 398-434 278-311 (539)
177 2g5m_B Neurabin-2; spinophilin 28.3 10 0.00034 32.1 -0.6 25 408-432 43-69 (113)
178 4a8c_A Periplasmic PH-dependen 28.2 32 0.0011 36.5 3.2 27 406-432 269-296 (436)
179 1whd_A RGS3, regulator of G-pr 28.0 17 0.00059 30.0 0.9 16 417-432 54-69 (100)
180 1y7n_A Amyloid beta A4 precurs 28.0 21 0.00071 29.3 1.4 16 417-432 49-64 (90)
181 2byg_A Channel associated prot 27.8 12 0.00039 32.3 -0.3 31 399-432 56-88 (117)
182 1i16_A Interleukin 16, LCF; cy 27.7 22 0.00076 31.0 1.6 44 399-453 59-104 (130)
183 3l4f_D SH3 and multiple ankyri 27.4 23 0.00077 31.2 1.6 32 398-432 66-98 (132)
184 3kh6_A Poly [ADP-ribose] polym 27.0 4.1E+02 0.014 25.1 11.8 104 79-196 33-136 (199)
185 1va8_A Maguk P55 subfamily mem 26.9 12 0.00042 31.8 -0.3 31 399-432 50-82 (113)
186 2eei_A PDZ domain-containing p 26.8 18 0.00061 30.1 0.7 16 417-432 50-65 (106)
187 4amh_A Disks large homolog 1; 26.8 13 0.00045 31.3 -0.1 25 407-431 39-65 (106)
188 1vae_A Rhophilin 2, rhophilin, 26.6 20 0.00068 30.7 1.0 16 417-432 54-69 (111)
189 3cbz_A Dishevelled-2; PDZ doma 26.1 11 0.00038 31.8 -0.6 45 399-454 35-81 (108)
190 2db5_A INAD-like protein; PDZ 25.8 13 0.00044 32.2 -0.3 16 417-432 73-88 (128)
191 2dm8_A INAD-like protein; PDZ 25.2 22 0.00074 30.0 1.0 24 409-432 52-77 (116)
192 2asb_A Transcription elongatio 24.9 73 0.0025 31.7 4.9 106 400-516 37-165 (251)
193 1lcy_A HTRA2 serine protease; 24.7 16 0.00054 37.1 0.0 25 408-432 264-289 (325)
194 2dc2_A GOPC, golgi associated 24.0 16 0.00055 30.5 -0.0 39 408-454 43-83 (103)
195 2kpk_A Membrane-associated gua 23.9 15 0.00052 32.0 -0.3 31 399-432 45-77 (129)
196 2daz_A INAD-like protein; PDZ 23.9 15 0.0005 31.7 -0.3 31 399-432 53-85 (124)
197 1vho_A Endoglucanase; structur 23.7 5.4E+02 0.018 25.4 13.5 60 266-336 8-67 (346)
198 2dmz_A INAD-like protein; PDZ 22.9 13 0.00045 32.2 -0.8 31 399-432 48-80 (129)
199 1ujd_A KIAA0559 protein; PDZ d 22.9 16 0.00055 31.2 -0.3 31 399-432 51-83 (117)
200 1uju_A Scribble; PDZ domain, c 22.7 9 0.00031 32.3 -1.9 31 399-432 46-78 (111)
201 2d92_A INAD-like protein; PDZ 22.5 16 0.00054 30.7 -0.4 39 407-453 51-91 (108)
202 1wg6_A Hypothetical protein (r 22.5 21 0.00071 31.1 0.4 27 406-432 61-89 (127)
203 1um7_A Synapse-associated prot 22.4 13 0.00043 31.2 -1.0 23 409-431 48-72 (113)
204 3num_A Serine protease HTRA1; 21.5 20 0.00067 36.4 0.0 27 406-432 260-287 (332)
205 3b76_A E3 ubiquitin-protein li 21.4 16 0.00056 31.6 -0.5 31 399-432 55-87 (118)
206 3rle_A Golgi reassembly-stacki 21.1 24 0.00081 33.4 0.5 27 406-432 22-50 (209)
207 3r0h_A INAD, inactivation-NO-a 21.0 21 0.0007 33.1 0.0 26 408-433 53-80 (206)
208 3hpk_A Protein interacting wit 21.0 22 0.00076 30.6 0.2 31 399-432 47-79 (125)
209 3r0h_A INAD, inactivation-NO-a 20.6 25 0.00084 32.6 0.5 31 399-432 138-170 (206)
210 2qt5_A Glutamate receptor-inte 20.3 21 0.0007 33.2 -0.2 25 408-432 41-67 (200)
211 3o46_A Maguk P55 subfamily mem 20.0 22 0.00076 28.8 0.0 30 399-431 30-61 (93)
No 1
>3h8g_F Cytosol aminopeptidase; hydrolase, manganese, metal-binding, proteas; HET: BES; 1.50A {Pseudomonas putida} PDB: 3h8e_A 3h8f_A*
Probab=100.00 E-value=6.3e-147 Score=1192.04 Aligned_cols=489 Identities=34% Similarity=0.568 Sum_probs=447.7
Q ss_pred eEEEeecCCcccccccEEEEEEecCCCCCCCCcccchhHHHHHHHHhhHHHHHHHhcCCCCCCCCcEEEEecC-CCCccE
Q 007947 79 ISFAAKEVDVVEWKGDILAVGVTEKDMGKDDNSKFQNSILKKLDAQLGGLLSEASSEEDFTGKAGQSTVIRLP-GIGSKR 157 (583)
Q Consensus 79 ~~~~~~~~~~~~~~~D~LVVgV~e~~~~~~~~s~~~~~~~~~ld~~l~g~Ls~~~~~~~f~Gk~Ge~~~l~~~-~~~~~r 157 (583)
|+|+.++.++.++++|+|||+|+++. .+++.++.+|+.+++.|+++++..+|+||.||++.++.+ +...+|
T Consensus 1 M~~~~~~~~~~~~~~d~lvv~v~~~~--------~l~~~~~~ld~~~~g~l~~~~~~~~f~gk~G~~~~l~~~~~~~~~r 72 (497)
T 3h8g_F 1 MELVVKSVAAASVKTATLVIPVGENR--------KLGAVAKAVDLASEGAISAVLKRGDLAGKPGQTLLLQNLQGLKAER 72 (497)
T ss_dssp CEEEEECSCGGGCCBSCEEEEEEGGG--------CCCHHHHHHHHHTTTHHHHHHHTCCCCCCTTCEEEECCCTTCSBSC
T ss_pred CEEEEEcCChhhccCCEEEEEEecCC--------ccchHHHHHhHHHHHHHHHHHHhCCCCCCCCCEEEEcCCCCCCccE
Confidence 66777888888999999999999974 135678899999999999999999999999999998865 567899
Q ss_pred EEEEecCCCC-CChHHHHHHHHHHHHHHHHcccCcEEEEecCCCCCCchhHHHHHHHHHHHHHhccccCccccCCCCCCC
Q 007947 158 VGLIGLGQSA-SRAGDFRSLGESVAAAAKAAQASNVAVVLASSDGLSDESKLTAASAVASGTVLGTFEDNRYRSESKKPV 236 (583)
Q Consensus 158 vllVGLGk~~-~~~~~~r~~~~a~a~~~k~~~~~~v~i~l~~~~~~~~~~~~~~~~a~aeG~~lg~Y~f~~yKs~~~~~~ 236 (583)
|++||||+.+ ++.+.+|++++++++.+++.+.+++.+.++.......+...+.+++++||+.|+.|+|++||++++++.
T Consensus 73 v~lvGlG~~~~~~~~~~r~a~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~aeG~~l~~Y~f~~yks~~~~~~ 152 (497)
T 3h8g_F 73 VLLVGSGKDEALGDRTWRKLVASVAGVLKGLNGADAVLALDDVAVNNRDAHYGKYRLLAETLLDGEYVFDRFKSQKVEPR 152 (497)
T ss_dssp EEEEEEESSSCBCHHHHHHHHHHHHHHHHHSCCSEEEECCTTCCBTTSCTTTHHHHHHHHHHHHTTCCCCTTCSSCCCCC
T ss_pred EEEEECCCcccCCHHHHHHHHHHHHHHHhhCCCceEEEecccccccccchhhHHHHHHHHHHHhcCccccccccCccCCC
Confidence 9999999986 788999999999999999999998888876532111111134578899999999999999999876543
Q ss_pred CccEEEEEcCC-CchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhhhcCCceEEEEeCHHHHHHcCC
Q 007947 237 SLKSVDIIGLG-TGPELEKKLKYAEHVSSAVIFGRELVNSPANVLTPAVLAEEASKVASMYSDVLSATILDIEKCKELKM 315 (583)
Q Consensus 237 ~l~~v~~~~~~-~~~~~~~~~~~~~~~a~~~~~aRdL~n~P~N~ltP~~~A~~a~~~~~~~~~~~~v~V~d~~~l~~~gm 315 (583)
.++++.++... +.++.++.+++++++++|+++||||+|+|||+|||++||+++++++++++ |++|+|+|++||+++||
T Consensus 153 ~l~~l~l~~~~~~~~~~~~~~~~~~~~a~~~~~aRdL~n~P~n~~~P~~~a~~a~~l~~~~~-g~~v~v~~~~~l~~~gm 231 (497)
T 3h8g_F 153 ALKKVTLLADKAGQAEVERAVKHASAIATGMAFTRDLGNLPPNLCHPSFLAEQAKELGKAHK-ALKVEVLDEKKIKDLGM 231 (497)
T ss_dssp SCCEEEEECCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHHCT-TEEEEEECHHHHHHTTC
T ss_pred cccEEEEEcCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCCccccCHHHHHHHHHHHHhhcC-CceEEEEeHHHHHhCCC
Confidence 57788887532 22456788999999999999999999999999999999999999999984 49999999999999999
Q ss_pred CchhhhcccCCCCCeEEEEEEcCCCCCCCceEEEEecceeecCCCCCCCCCCcccccccccccchHHHHHHHHHHHHhcC
Q 007947 316 GSYLGVAAASANLPHFIHLCYKPPGGSAKIKLALVGKGLTFDSGGYNIKTGPGCLIENMKYDMGGAAAVLGAAKAIGQIK 395 (583)
Q Consensus 316 g~llaV~~GS~~pPrli~l~Y~g~~~~~~~~i~LVGKGiTFDsGG~slKp~~~~~M~~MK~DM~GAAaVlga~~aia~lk 395 (583)
|+||+|||||.+|||||+|+|+|+ ++.+++|+|||||||||||||||||+. +|++||+||+|||+|+|+|+++++||
T Consensus 232 g~~laVg~gS~~pPrli~l~y~g~-~~~~~~i~LVGKGiTFDsGG~slKp~~--~M~~Mk~DM~GAAaV~g~~~a~a~l~ 308 (497)
T 3h8g_F 232 GAFYAVGQGSDQPPRLIVLNYQGG-KKADKPFVLVGKGITFDTGGISLKPGA--GMDEMKYDMCGAASVFGTLRAVLELQ 308 (497)
T ss_dssp HHHHHHHTTSSSCCEEEEEEEECS-CTTSCCEEEEEEEEEEECCTTSCCCST--TGGGGGGTTHHHHHHHHHHHHHHHHT
T ss_pred CcEEEEccCCCCCCEEEEEEECCC-CCCCCcEEEEcCceEeccCCccCCCcc--chhhccccchHHHHHHHHHHHHHHcC
Confidence 999999999999999999999994 456789999999999999999999998 89999999999999999999999999
Q ss_pred CCceEEEEEEeecccCCCCCCCCCCcEEEccCCcEEEeecCCccCceehhhhhhHHHhcCCCeEEEecchhHHHHHhhCC
Q 007947 396 PPGVEVHFIVAACENMISGTGMRPGDIITAANGKTIEVNNTDAEGRLTLADALIYACNQGVDKVIDLATLTGACVVALGP 475 (583)
Q Consensus 396 lp~vnV~~ii~~~ENm~sg~A~rPGDVvts~~GkTVEV~NTDAEGRLvLADaL~Ya~~~~p~~iIDiATLTGA~~vALG~ 475 (583)
+| +||+++||+|||||||+|||||||||+||||||||.||||||||||||+|+||++++|+.|||+|||||||++|||+
T Consensus 309 l~-vnv~~~i~~~ENm~~g~A~rPgDVit~~~G~TVEV~NTDAEGRLvLADaL~ya~~~~p~~iiD~ATLTGa~~vALG~ 387 (497)
T 3h8g_F 309 LP-VNLVCLLACAENMPSGGATRPGDIVTTMSGQTVEILNTDAEGRLVLCDTLTYAERFKPQAVIDIATLTGACIVALGS 387 (497)
T ss_dssp CS-SEEEEEEEEEEECCSTTSCCTTEEEECTTSCEEEESCTTCCHHHHHHHHHHHHGGGCCSEEEEEECCCHHHHHHHTT
T ss_pred CC-eEEEEEEEeeccCCCCCCCCCCCEEEeCCCcEEEecCCCchhhhhhHHHHHHHHhcCCCEEEEecccHHHHHHHhCC
Confidence 99 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEeeCCHHHHHHHHHHHHHhCCceeeCCCChhHHhhccCcccccccCCCCCCchhHHHHHHhhccCCCCCeEEeeec
Q 007947 476 SVAGAFTPSDDLANEVMAASQVSGEKIWRMPLEESYWEMMKSGVADMVNTGGRQGGAITAALFLKQYVDEKVQWMHIDIA 555 (583)
Q Consensus 476 ~~agvfsn~~~l~~~l~~ag~~~gE~~WrlPl~~~y~~~lkS~vADl~N~g~~~~gaitAA~FL~~Fv~~~~~WaHlDIA 555 (583)
+++|+|+|||+|+++|++||+.+||++||||||++|+++|||++|||+|+|+|+||+||||+||++||+ ++||+|||||
T Consensus 388 ~~~g~~sn~d~l~~~l~~ag~~~ge~~WrlPl~~~y~~~l~S~~ADl~N~g~~~~g~itAA~FL~~Fv~-~~~W~HlDIA 466 (497)
T 3h8g_F 388 HTTGLMGNNDDLVGQLLDAGKRADDRAWQLPLFDEYQEQLDSPFADMGNIGGPKAGTITAGCFLSRFAK-AYNWAHMDIA 466 (497)
T ss_dssp TSEEEEESCHHHHHHHHHHHHHHTCCEEECCCCHHHHGGGCCSSSSEESCCCSSSHHHHHHHHHHTTCT-TSCEEEEECT
T ss_pred CceEEEECCHHHHHHHHHHHHHhCCCeEeCCCCHHHHHhcCCCeeceeCCCCCchhhHHHHHHHHHhCC-CCCEEEEeCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999995 7999999999
Q ss_pred ccCCCCC--CCCcccchHHHHHHHHHhc
Q 007947 556 GPVWSEK--MRSATGFGISTMVEWVLKN 581 (583)
Q Consensus 556 G~a~~~~--~kgaTG~gVrtL~~~l~~~ 581 (583)
||+|.++ ++|+||+|||||++||+++
T Consensus 467 G~a~~~~~~~~g~TG~~vr~L~~~l~~~ 494 (497)
T 3h8g_F 467 GTAWISGGKDKGATGRPVPLLTQYLLDR 494 (497)
T ss_dssp TTSEECSSTTCEECCTTHHHHHHHHHHH
T ss_pred CCCccCCCCCCCcccHHHHHHHHHHHHh
Confidence 9999653 5899999999999999875
No 2
>3jru_B Probable cytosol aminopeptidase; bacterial blight, XOO0834, PEPA, xanthomonas oryzae PV. ORYZ KACC10331, hydrolase, manganese; 2.60A {Xanthomonas oryzae PV}
Probab=100.00 E-value=1.8e-146 Score=1185.42 Aligned_cols=485 Identities=35% Similarity=0.521 Sum_probs=445.3
Q ss_pred eeeEEEeecCCcccccccEEEEEEecCCCCCCCCcccchhHHHHHHHHhhHHHHHHHhcCCCCCCCCcEEEEecC-CCCc
Q 007947 77 LKISFAAKEVDVVEWKGDILAVGVTEKDMGKDDNSKFQNSILKKLDAQLGGLLSEASSEEDFTGKAGQSTVIRLP-GIGS 155 (583)
Q Consensus 77 ~~~~~~~~~~~~~~~~~D~LVVgV~e~~~~~~~~s~~~~~~~~~ld~~l~g~Ls~~~~~~~f~Gk~Ge~~~l~~~-~~~~ 155 (583)
|.|+|+.++.++.++++|+|||+|+++. .+++.++.+|+.+++.|+++++..+|+||.||++.++.+ +...
T Consensus 1 m~M~~~~~~~~~~~~~~d~lvv~v~~~~--------~l~~~~~~ld~~~~g~l~~~~~~~~f~gk~G~~~~l~~~~~~~~ 72 (490)
T 3jru_B 1 MALQFTLNQDAPASAAVDCIVVGAFADK--------TLSPAAQALDSASQGRLTALLARGDVAGKTGSTTLLHDLPGVAA 72 (490)
T ss_dssp CCCEEEEECCCTTTCCSSEEEEEECTTS--------CBCHHHHHHHHHTTSHHHHHHHHTCSCCSTTCEEEEECCTTCSS
T ss_pred CceEEEEEcCCcccccCCEEEEEEeCCC--------ccchhHHHHhHHHHHHHHHHHHhCCCCCCCCCEEEEccCCCCCc
Confidence 4578888888888999999999999974 235677899999999999999999999999999999865 5678
Q ss_pred cEEEEEecCCCC-CChHHHHHHHHHHHHHHHHcccCcEEEEecCCCCCCchhHHHHHHHHHHHHHhccccCccccCCCCC
Q 007947 156 KRVGLIGLGQSA-SRAGDFRSLGESVAAAAKAAQASNVAVVLASSDGLSDESKLTAASAVASGTVLGTFEDNRYRSESKK 234 (583)
Q Consensus 156 ~rvllVGLGk~~-~~~~~~r~~~~a~a~~~k~~~~~~v~i~l~~~~~~~~~~~~~~~~a~aeG~~lg~Y~f~~yKs~~~~ 234 (583)
+||++||||+.+ ++.+.+|++++++++.+++.+.+++.+.++.... ......+.+++++||+.|+.|+|++||+++++
T Consensus 73 ~~v~lvGlG~~~~~~~~~~r~a~~~~~~~l~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~aeg~~l~~Y~f~~yks~~~~ 151 (490)
T 3jru_B 73 PRVLVVGLGDAGKFGVAPYLKAIGDATRALKTGAVGTALLTLTELTV-KARDAAWNIRQAVTVSDHAAYRYTATLGKKKV 151 (490)
T ss_dssp SEEEEEECCCGGGCSHHHHHHHHHHHHHHHSSSSCSEEEECGGGSCC-TTCCHHHHHHHHHHHHHHHHCCCCTTCSSCCC
T ss_pred cEEEEEecCCcccCCHHHHHHHHHHHHHHHhhCCCceEEEECccccc-ccccHHHHHHHHHHHHHhcccchhhhccCCcc
Confidence 999999999986 7889999999999999988888888887775431 11123356889999999999999999998763
Q ss_pred -CCCccEEEEEcCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhhhcCCceEEEEeCHHHHHHc
Q 007947 235 -PVSLKSVDIIGLGTGPELEKKLKYAEHVSSAVIFGRELVNSPANVLTPAVLAEEASKVASMYSDVLSATILDIEKCKEL 313 (583)
Q Consensus 235 -~~~l~~v~~~~~~~~~~~~~~~~~~~~~a~~~~~aRdL~n~P~N~ltP~~~A~~a~~~~~~~~~~~~v~V~d~~~l~~~ 313 (583)
+..++++.++.. . ...+++++++++++++||||+|+|||+|||++||+++++++++++ |++|+|+|++||+++
T Consensus 152 ~~~~l~~l~l~~~--~---~~~~~~~~~~a~~~~~aRdL~n~P~n~~~P~~~a~~a~~~~~~~~-g~~v~v~~~~~l~~~ 225 (490)
T 3jru_B 152 DETGLTTLAIAGD--D---ARALAVGVATAEGVEFARELGNLPPNYCTPAYLADTAAAFAGKFP-GAEAEILDEAQMEAL 225 (490)
T ss_dssp CCCSCCEEEEEBC--C---HHHHHHHHHHHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHTTST-TEEEEEECHHHHHHT
T ss_pred ccCCccEEEEecC--C---HHHHHHHHHHHHHHHHHHHhhcCCccccCHHHHHHHHHHHHhhcC-CCeEEEEcHHHHHhC
Confidence 235778887742 1 157899999999999999999999999999999999999999874 499999999999999
Q ss_pred CCCchhhhcccCCCCCeEEEEEEcCCCCCCCceEEEEecceeecCCCCCCCCCCcccccccccccchHHHHHHHHHHHHh
Q 007947 314 KMGSYLGVAAASANLPHFIHLCYKPPGGSAKIKLALVGKGLTFDSGGYNIKTGPGCLIENMKYDMGGAAAVLGAAKAIGQ 393 (583)
Q Consensus 314 gmg~llaV~~GS~~pPrli~l~Y~g~~~~~~~~i~LVGKGiTFDsGG~slKp~~~~~M~~MK~DM~GAAaVlga~~aia~ 393 (583)
|||+||+|||||.+|||||+|+|+|+ + .+++|+|||||||||||||||||+. +|++||+||+|||+|+|+|+++++
T Consensus 226 gmg~~laVg~gS~~pPrli~l~y~g~-~-~~~~i~LVGKGiTFDsGG~slKp~~--~M~~Mk~DM~GAAaV~g~~~a~a~ 301 (490)
T 3jru_B 226 GMGSLLSVARGSANRPRLIVLKWNGG-G-DARPYVLVGKGITFDTGGVNLKTQG--GIEEMKYDMCGGATVIGTFVATVK 301 (490)
T ss_dssp TCHHHHHHHHTCSSCCEEEEEEEETT-T-TSCCEEEEECEEEEECCTTSCCCSS--CGGGGGGGGHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEccCCCCCCEEEEEEEcCC-C-CCCcEEEEcCeeEecCCCccCCCcc--cHhhCcccchHHHHHHHHHHHHHH
Confidence 99999999999999999999999994 4 6789999999999999999999998 899999999999999999999999
Q ss_pred cCCCceEEEEEEeecccCCCCCCCCCCcEEEccCCcEEEeecCCccCceehhhhhhHHHhcCCCeEEEecchhHHHHHhh
Q 007947 394 IKPPGVEVHFIVAACENMISGTGMRPGDIITAANGKTIEVNNTDAEGRLTLADALIYACNQGVDKVIDLATLTGACVVAL 473 (583)
Q Consensus 394 lklp~vnV~~ii~~~ENm~sg~A~rPGDVvts~~GkTVEV~NTDAEGRLvLADaL~Ya~~~~p~~iIDiATLTGA~~vAL 473 (583)
||+| +||+++||+|||||||+|||||||||+||||||||.||||||||||||+|+||++++|+.|||+|||||||++||
T Consensus 302 l~l~-vnv~~~i~~~ENm~sg~A~rPgDVit~~~G~TVEV~NTDAEGRLvLADaL~ya~~~~p~~iiD~ATLTGa~~vAL 380 (490)
T 3jru_B 302 AELP-INLVVVVPAVENAIDGNAYRPSDVITSMSGKTIEVGNTDAEGRLILCDALTYAERFNPEALVDVATLTGACMVAL 380 (490)
T ss_dssp TTCS-SEEEEEEEEEEECCSTTCCCTTCEEECTTSCEEECSCTTCCHHHHHHHHHHHHGGGCCSEEEEEECCCHHHHHHH
T ss_pred cCCC-cEEEEEEEeeccCCCCCCCCCCCEEEecCCcEEEecCCCchHhHHHHHHHHHHhhcCCCEEEEEcchHHHHHHHh
Confidence 9999 999999999999999999999999999999999999999999999999999998899999999999999999999
Q ss_pred CCCeEEEeeCCHHHHHHHHHHHHHhCCceeeCCCChhHHhhccCcccccccCCCCCCchhHHHHHHhhccCCCCCeEEee
Q 007947 474 GPSVAGAFTPSDDLANEVMAASQVSGEKIWRMPLEESYWEMMKSGVADMVNTGGRQGGAITAALFLKQYVDEKVQWMHID 553 (583)
Q Consensus 474 G~~~agvfsn~~~l~~~l~~ag~~~gE~~WrlPl~~~y~~~lkS~vADl~N~g~~~~gaitAA~FL~~Fv~~~~~WaHlD 553 (583)
|++++|+|+|||+|+++|++||+.+||++||||||++|+++|||++|||+|+|+|+||+||||+||++||+ ++||+|||
T Consensus 381 G~~~~g~~sn~d~l~~~l~~ag~~~ge~~WrlPl~~~y~~~l~S~~ADl~N~g~~~~g~itAA~FL~~Fv~-~~~W~HlD 459 (490)
T 3jru_B 381 GHQTAGLMSKHDDLANELLAAGEHVFDRAWRLPLWDEYQGLLDSTFADVYNIGGRWGGAITAGCFLSRFTE-NQRWAHLD 459 (490)
T ss_dssp TTTCEEEEESCHHHHHHHHHHHHHTTCCEEECCCCGGGGGGGCCSSSSEESCCCSSCHHHHHHHHHHTTCT-TSCEEEEE
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhCCceEeCCCCHHHHhhcCCCeeeeeCCCCCchHHHHHHHHHHHhCC-CCCEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999994 79999999
Q ss_pred ecccCCCCC-CCCcccchHHHHHHHHHhcc
Q 007947 554 IAGPVWSEK-MRSATGFGISTMVEWVLKNS 582 (583)
Q Consensus 554 IAG~a~~~~-~kgaTG~gVrtL~~~l~~~~ 582 (583)
||||+|.++ ++|+||||||||+||+++++
T Consensus 460 IAG~a~~~~~~kG~TG~~vr~L~~~l~~~a 489 (490)
T 3jru_B 460 IAGVASDEGKRGMATGRPVGLLTQWLLDRA 489 (490)
T ss_dssp CTTTSBCSSTTCCBCCTTHHHHHHHHHHHH
T ss_pred cCCcCcCCCCCCCCcchHHHHHHHHHHHhc
Confidence 999999764 68999999999999999864
No 3
>1gyt_A Cytosol aminopeptidase; hydrolase, DNA recombination; 2.5A {Escherichia coli} SCOP: c.56.5.3 c.50.1.1
Probab=100.00 E-value=6.9e-146 Score=1191.53 Aligned_cols=490 Identities=33% Similarity=0.529 Sum_probs=441.0
Q ss_pred eEEEeecCCcccccccEEEEEEecCCCCCCCCcccchhHHHHHHHHhhHHHHHHHhcCCCCCCCCcEEEEecC-CCCccE
Q 007947 79 ISFAAKEVDVVEWKGDILAVGVTEKDMGKDDNSKFQNSILKKLDAQLGGLLSEASSEEDFTGKAGQSTVIRLP-GIGSKR 157 (583)
Q Consensus 79 ~~~~~~~~~~~~~~~D~LVVgV~e~~~~~~~~s~~~~~~~~~ld~~l~g~Ls~~~~~~~f~Gk~Ge~~~l~~~-~~~~~r 157 (583)
|+|+.+...+.+++.|+|||+|++++ .+.+....+|+.+.+.++++++..+|+||.|+++.++.+ +...+|
T Consensus 1 m~~~~~~~~~~~~~~~~lvv~v~~~~--------~l~~~~~~~~~~~~~~l~~~~~~~~f~gk~g~~~~~~~~~~~~~~~ 72 (503)
T 1gyt_A 1 MEFSVKSGSPEKQRSACIVVGVFEPR--------RLSPIAEQLDKISDGYISALLRRGELEGKPGQTLLLHHVPNVLSER 72 (503)
T ss_dssp CEEEEECCCGGGCCSSCEEEEEETTT--------EECHHHHHHHTTSSSHHHHHHHHTSCCCCTTCEEEEESCTTCSSSE
T ss_pred CEEEEecCcccccCCCEEEEEEecCC--------ccchHHHHHhHHhHHHHHHHHHhCCCCCCCCCEEEEcCCCCCCccE
Confidence 45655555566778999999999874 134556789999999999999999999999999988854 567899
Q ss_pred EEEEecCCCC-CChHHHHHHHHHHHHHHHHcccCcEEEEecCCCCCCchhHHHHHHHHHHHHHhccccCccccCCCCCC-
Q 007947 158 VGLIGLGQSA-SRAGDFRSLGESVAAAAKAAQASNVAVVLASSDGLSDESKLTAASAVASGTVLGTFEDNRYRSESKKP- 235 (583)
Q Consensus 158 vllVGLGk~~-~~~~~~r~~~~a~a~~~k~~~~~~v~i~l~~~~~~~~~~~~~~~~a~aeG~~lg~Y~f~~yKs~~~~~- 235 (583)
+++||||+.+ ++.+.+|++++++++.+++.+.+++.+.++.... +.....+.+++++||+.|+.|+|++||++++++
T Consensus 73 v~lvGlG~~~~~~~~~~r~a~~~~~~~l~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~a~g~~l~~Y~f~~~k~~~~~~~ 151 (503)
T 1gyt_A 73 ILLIGCGKERELDERQYKQVIQKTINTLNDTGSMEAVCFLTELHV-KGRNNYWKVRQAVETAKETLYSFDQLKTNKSEPR 151 (503)
T ss_dssp EEEEECCSTTCCCHHHHHHHHHHHHHHHHHSCCSEEEECGGGSCB-TTBCHHHHHHHHHHHHHHHHCCCCTTCSSCCCCC
T ss_pred EEEEEcCchhhcCHHHHHHHHHHHHHHHHhcCCceEEEEcccccc-cccccHHHHHHHHHHHHHhCcccccccccccccc
Confidence 9999999986 7888999999999999999998888887764321 111113457889999999999999999986432
Q ss_pred CCccEEEEEcCCC--chHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhhhcCCceEEEEeCHHHHHHc
Q 007947 236 VSLKSVDIIGLGT--GPELEKKLKYAEHVSSAVIFGRELVNSPANVLTPAVLAEEASKVASMYSDVLSATILDIEKCKEL 313 (583)
Q Consensus 236 ~~l~~v~~~~~~~--~~~~~~~~~~~~~~a~~~~~aRdL~n~P~N~ltP~~~A~~a~~~~~~~~~~~~v~V~d~~~l~~~ 313 (583)
..++++.++.... .++.+..+++++++++|+++||||+|+|||+|||++||++|+++++++++.++|+|+|++||+++
T Consensus 152 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~laRdL~n~P~N~~tP~~lA~~a~~la~~~g~~~~v~Vl~~~~l~~~ 231 (503)
T 1gyt_A 152 RPLRKMVFNVPTRRELTSGERAIQHGLAIAAGIKAAKDLGNMPPNICNAAYLASQARQLADSYSKNVITRVIGEQQMKEL 231 (503)
T ss_dssp CCCCEEEEECSSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTCSHHHHHHHHHHHHHHTTTTEEEEEECHHHHHHT
T ss_pred ccccEEEEEecCccchHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCHHHHHHHHHHHHHhcCCceEEEEEcHHHHHHC
Confidence 2467888775321 23567789999999999999999999999999999999999999998843399999999999999
Q ss_pred CCCchhhhcccCCCCCeEEEEEEcCCCCC-CCceEEEEecceeecCCCCCCCCCCcccccccccccchHHHHHHHHHHHH
Q 007947 314 KMGSYLGVAAASANLPHFIHLCYKPPGGS-AKIKLALVGKGLTFDSGGYNIKTGPGCLIENMKYDMGGAAAVLGAAKAIG 392 (583)
Q Consensus 314 gmg~llaV~~GS~~pPrli~l~Y~g~~~~-~~~~i~LVGKGiTFDsGG~slKp~~~~~M~~MK~DM~GAAaVlga~~aia 392 (583)
|||+||+|||||.+|||||+|+|+|+ ++ .+++|+|||||||||||||||||+. +|++||+||||||+|+|+|++++
T Consensus 232 gmg~~laVg~GS~~pPrli~l~Y~g~-~~~~~~~i~LVGKGITFDsGGislKp~~--~M~~MK~DM~GAAaVlg~~~aia 308 (503)
T 1gyt_A 232 GMHSYLAVGQGSQNESLMSVIEYKGN-ASEDARPIVLVGKGLTFDSGGISIKPSE--GMDEMKYDMCGAAAVYGVMRMVA 308 (503)
T ss_dssp TCHHHHHHHHTSSSCCEEEEEEEECC-CCTTCCCEEEEEEEEEEECCTTSCCCST--TGGGGGGGGHHHHHHHHHHHHHH
T ss_pred CCCceeeecccCCCCCeEEEEEECCC-CCCCCCcEEEEcCceEecCCCccccCCc--ChhhcccccchHHHHHHHHHHHH
Confidence 99999999999999999999999994 33 5689999999999999999999998 89999999999999999999999
Q ss_pred hcCCCceEEEEEEeecccCCCCCCCCCCcEEEccCCcEEEeecCCccCceehhhhhhHHHhcCCCeEEEecchhHHHHHh
Q 007947 393 QIKPPGVEVHFIVAACENMISGTGMRPGDIITAANGKTIEVNNTDAEGRLTLADALIYACNQGVDKVIDLATLTGACVVA 472 (583)
Q Consensus 393 ~lklp~vnV~~ii~~~ENm~sg~A~rPGDVvts~~GkTVEV~NTDAEGRLvLADaL~Ya~~~~p~~iIDiATLTGA~~vA 472 (583)
+||+| |||+++||+|||||||+|||||||||+||||||||.||||||||||||+|+||++++|+.|||+|||||||++|
T Consensus 309 ~l~l~-vnV~~~i~~~ENm~sg~A~rPgDVits~~GkTVEV~NTDAEGRLVLADaL~yA~~~~P~~iID~ATLTGA~~vA 387 (503)
T 1gyt_A 309 ELQLP-INVIGVLAGCENMPGGRAYRPGDVLTTMSGQTVEVLNTDAEGRLVLCDVLTYVERFEPEAVIDVATLTGACVIA 387 (503)
T ss_dssp HHTCS-SEEEEEEEEEEECCSTTCCCTTCEEECTTSCEEECSCTTCCHHHHHHHHHHHGGGGCCSEEEEEECCCHHHHHH
T ss_pred HcCCC-eeEEEEEEeeccCCCCCCCCCCCEEEeCCCcEEEecCCCcchhhHhHHHHHHHHHcCCCEEEEhhhhHHHHHHH
Confidence 99999 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCeEEEeeCCHHHHHHHHHHHHHhCCceeeCCCChhHHhhccCcccccccCCCCCCchhHHHHHHhhccCCCCCeEEe
Q 007947 473 LGPSVAGAFTPSDDLANEVMAASQVSGEKIWRMPLEESYWEMMKSGVADMVNTGGRQGGAITAALFLKQYVDEKVQWMHI 552 (583)
Q Consensus 473 LG~~~agvfsn~~~l~~~l~~ag~~~gE~~WrlPl~~~y~~~lkS~vADl~N~g~~~~gaitAA~FL~~Fv~~~~~WaHl 552 (583)
||++++|+|+|||+|+++|++||+.+||++||||||++|+++|||++|||+|+|+|+||+||||+||++||+ ++||+||
T Consensus 388 LG~~~ag~~sn~d~l~~~l~~Ag~~~ge~~WrmPl~~~y~~~l~S~~ADl~N~g~~~~GsitAA~FL~~Fv~-~~~WaHl 466 (503)
T 1gyt_A 388 LGHHITGLMANHNPLAHELIAASEQSGDRAWRLPLGDEYQEQLESNFADMANIGGRPGGAITAGCFLSRFTR-KYNWAHL 466 (503)
T ss_dssp HTTTSEEEEESCHHHHHHHHHHHHHHTCCEEECCCCHHHHGGGCCSSSSEESCCCSTTHHHHHHHHHHTTCT-TSCEEEE
T ss_pred hCCCceEEEeCCHHHHHHHHHHHHHhCCceeeCCCCHHHHHHcCCchhhhcCCCCCCCchhHHHHHHHHhCC-CCCEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999995 6999999
Q ss_pred eecccCCCCC-CCCcccchHHHHHHHHHhcc
Q 007947 553 DIAGPVWSEK-MRSATGFGISTMVEWVLKNS 582 (583)
Q Consensus 553 DIAG~a~~~~-~kgaTG~gVrtL~~~l~~~~ 582 (583)
|||||+|... ++|+||+|||||++|++++.
T Consensus 467 DIAG~a~~~~~~kg~TG~~vrtL~~~l~~~~ 497 (503)
T 1gyt_A 467 DIAGTAWRSGKAKGATGRPVALLAQFLLNRA 497 (503)
T ss_dssp ECTTTSEECGGGCEECCTTHHHHHHHHHHHT
T ss_pred ecCccCcCCCCCCCcEeHHHHHHHHHHHHHh
Confidence 9999999543 68999999999999998753
No 4
>3kr4_A M17 leucyl aminopeptidase; protease, hydrolase; HET: BES 1PE; 2.00A {Plasmodium falciparum} PDB: 3kqz_A* 3kqx_A* 3kr5_A* 3t8w_A*
Probab=100.00 E-value=3.1e-145 Score=1174.65 Aligned_cols=484 Identities=37% Similarity=0.589 Sum_probs=436.9
Q ss_pred eEEEeecCC-cccccccEEEEEEecCCCCCCCCcccchhHHHHHHHHhhHHHHHHHhcC---CCCCCCCcEEEEecCC--
Q 007947 79 ISFAAKEVD-VVEWKGDILAVGVTEKDMGKDDNSKFQNSILKKLDAQLGGLLSEASSEE---DFTGKAGQSTVIRLPG-- 152 (583)
Q Consensus 79 ~~~~~~~~~-~~~~~~D~LVVgV~e~~~~~~~~s~~~~~~~~~ld~~l~g~Ls~~~~~~---~f~Gk~Ge~~~l~~~~-- 152 (583)
+++.+++.. --.++.|++||+|+++.. ++..++.+|+.+++.|+++++.+ +|+||.||++.++.++
T Consensus 27 ~~~~~~d~~~~~~~~~~l~Vv~V~e~~~--------l~G~ak~lD~as~G~Is~llk~G~~~~f~Gk~g~~~~l~~~~~~ 98 (528)
T 3kr4_A 27 IKVQVYDIKGGCNVEEGLTIFLVNNPGK--------ENGPVKISSKVNDKQVSEFLKDENMEKFNVKLGTSKHFYMFNDN 98 (528)
T ss_dssp CEEEEEEGGGCBCCCSSEEEEEECCSSS--------TTCBCCCCSCBSCHHHHHHTSHHHHTTSBCCTTCEEEEEEECTT
T ss_pred ceEEEEeccccccCCCCeEEEEecCCcc--------cCccHHHHHHHHHHHHHHHHHcCCcCcceeCCCCEEEEecCCCC
Confidence 344445432 346789999999999853 23345567888999999999995 8999999999988653
Q ss_pred CCccEEEEEecCCCC-CChHHHHHHHHHHHHHHHHcccCcEEEEecCCCCCCchhHHHHHHHHHHHHHhccccCccccCC
Q 007947 153 IGSKRVGLIGLGQSA-SRAGDFRSLGESVAAAAKAAQASNVAVVLASSDGLSDESKLTAASAVASGTVLGTFEDNRYRSE 231 (583)
Q Consensus 153 ~~~~rvllVGLGk~~-~~~~~~r~~~~a~a~~~k~~~~~~v~i~l~~~~~~~~~~~~~~~~a~aeG~~lg~Y~f~~yKs~ 231 (583)
...+||++||||+.+ ++.+.+|++++++++.+++.+.+++.+.++... ....+++++||++++.|+|++|||+
T Consensus 99 ~~~~rvllVGlGk~~~l~~~~~r~a~~~~~~~l~~~~~~~~~~~~~~~~------~~~~~~~~~eg~~l~~y~f~~yks~ 172 (528)
T 3kr4_A 99 KNSVAVGYVGCGSVADLSEADMKRVVLSLVTMLHDNKLSKLTVVFEINV------DKNLFRFFLETLFYEYMTDERFKST 172 (528)
T ss_dssp SCEEEEEEEECCSCSSCCHHHHHHHHHHHHHHHTTSCCSEEEEEECSCC------CHHHHHHHHHHHHHHHCCCCTTCST
T ss_pred CCccEEEEEECCCcccCCHHHHHHHHHHHHHHHhhcCccEEEEeccCCC------cHHHHHHHHHHHHhhhccccccccC
Confidence 467899999999986 899999999999999999888888887664321 1235678999999999999999997
Q ss_pred CCCC--CCccEEEEEcCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhhhcCCceEEEEeCHHH
Q 007947 232 SKKP--VSLKSVDIIGLGTGPELEKKLKYAEHVSSAVIFGRELVNSPANVLTPAVLAEEASKVASMYSDVLSATILDIEK 309 (583)
Q Consensus 232 ~~~~--~~l~~v~~~~~~~~~~~~~~~~~~~~~a~~~~~aRdL~n~P~N~ltP~~~A~~a~~~~~~~~~~~~v~V~d~~~ 309 (583)
++++ ..++++.++.. ..++.++++++++++++|+++||||+|+|||+|||++||++|++++++++ ++|+|+|++|
T Consensus 173 ~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~a~~v~laRdLvn~P~N~ltP~~lA~~a~~la~~~g--~~v~Vl~~~~ 249 (528)
T 3kr4_A 173 DKNVNMEYIKHLGVYIN-NADTYKEEVEKARVYYFGTYYASQLIAAPSNYCNPVSLSNAAVELAQKLN--LEYKILGVKE 249 (528)
T ss_dssp TCCC-CCCCSEEEEEET-TGGGTTHHHHHHHHHHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHHHT--CEEEEECHHH
T ss_pred CCcccccCceEEEEEeC-ChHHHHHHHHHHHHHHHHHHHHHHHhhCCccccCHHHHHHHHHHHHHHcC--CeEEEeeHHH
Confidence 6542 24778887753 34456788999999999999999999999999999999999999999986 9999999999
Q ss_pred HHHcCCCchhhhcccCCCCCeEEEEEEcCCCCCCCceEEEEecceeecCCCCCCCCCCcccccccccccchHHHHHHHHH
Q 007947 310 CKELKMGSYLGVAAASANLPHFIHLCYKPPGGSAKIKLALVGKGLTFDSGGYNIKTGPGCLIENMKYDMGGAAAVLGAAK 389 (583)
Q Consensus 310 l~~~gmg~llaV~~GS~~pPrli~l~Y~g~~~~~~~~i~LVGKGiTFDsGG~slKp~~~~~M~~MK~DM~GAAaVlga~~ 389 (583)
|+++|||+||+|||||.+|||||+|+|+|+ ++.+++|+|||||||||||||||||+++++|++||+||+|||+|+|+|+
T Consensus 250 l~~~gmg~~laVg~GS~~pPrli~l~y~g~-~~~~~~iaLVGKGITFDsGG~slKp~~g~~M~~MK~DM~GAAaVlg~~~ 328 (528)
T 3kr4_A 250 LEELKMGAYLSVGKGSMYPNKFIHLTYKSK-GDVKKKIALVGKGITFDSGGYNLKAAPGSMIDLMKFDMSGCAAVLGCAY 328 (528)
T ss_dssp HHHTTCHHHHHHGGGCSSCCEEEEEEEECS-SCCCEEEEEEEEEEEEECCTTSCSCSTTCCGGGGGGGGHHHHHHHHHHH
T ss_pred HHhcCCCeEEeeccCCCCCCEEEEEEEcCC-CCCCCcEEEecCceEeecCCcccCCCCCcCHHHhhcCcchHHHHHHHHH
Confidence 999999999999999999999999999994 4567899999999999999999999874469999999999999999999
Q ss_pred HHHhcCCCceEEEEEEeecccCCCCCCCCCCcEEEccCCcEEEeecCCccCceehhhhhhHHHhcCCCeEEEecchhHHH
Q 007947 390 AIGQIKPPGVEVHFIVAACENMISGTGMRPGDIITAANGKTIEVNNTDAEGRLTLADALIYACNQGVDKVIDLATLTGAC 469 (583)
Q Consensus 390 aia~lklp~vnV~~ii~~~ENm~sg~A~rPGDVvts~~GkTVEV~NTDAEGRLvLADaL~Ya~~~~p~~iIDiATLTGA~ 469 (583)
|+++||+++|||+++||+|||||||+|||||||||+||||||||.||||||||||||+|+||++++|+.|||+|||||||
T Consensus 329 aia~l~~~~vnv~~vi~~~ENm~sg~A~rPgDVit~~~GkTVEV~NTDAEGRLvLADaL~yA~~~~p~~iID~ATLTGA~ 408 (528)
T 3kr4_A 329 CVGTLKPENVEIHFLSAVCENMVSKNSYRPGDIITASNGKTIEVGNTDAEGRLTLADALVYAEKLGVDYIVDIATLTGAM 408 (528)
T ss_dssp HHHHHCCSSEEEEEEEEEEEECCSTTSCCTTCEEECTTSCEEECSCTTCCHHHHHHHHHHHHHHTCCSEEEEEECCCTTH
T ss_pred HHHhcCCCCceEEEEEEeeccCCCCCCCCCCCEEEeCCCcEEEEecCCchhhhhhHHHHHHHHhhCCCEEEEeecchHHH
Confidence 99999984599999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCeEEEeeCCHHHHHHHHHHHHHhCCceeeCCCChhHHhhccCcccccccCC-CCCCchhHHHHHHhhccCCCCC
Q 007947 470 VVALGPSVAGAFTPSDDLANEVMAASQVSGEKIWRMPLEESYWEMMKSGVADMVNTG-GRQGGAITAALFLKQYVDEKVQ 548 (583)
Q Consensus 470 ~vALG~~~agvfsn~~~l~~~l~~ag~~~gE~~WrlPl~~~y~~~lkS~vADl~N~g-~~~~gaitAA~FL~~Fv~~~~~ 548 (583)
++|||++++|+|+|||+|+++|.+||+++||++||||||++|+++|||++|||+|+| +|+||+||||+||+|||+ ++|
T Consensus 409 ~vALG~~~agv~sn~d~l~~~l~~Ag~~~ge~~WrlPl~~~y~~~l~S~vADl~N~g~~~~agsitAA~FL~~Fv~-~~~ 487 (528)
T 3kr4_A 409 LYSLGTSYAGVFGNNEELINKILQSSKTSNEPVWWLPIINEYRATLNSKYADINQISSSVKASSIVASLFLKEFVQ-NTA 487 (528)
T ss_dssp HHHTTTTCEEEEESCHHHHHHHHHHHHHHTCCEEECCCCGGGGGGGCCSSSSEESSCSSCCCHHHHHHHHHHTTCS-SSE
T ss_pred HHHhCCCceEEEeCCHHHHHHHHHHHHHcCCcEEeCCCCHHHHhhcCCceeccccCCCCCCcHHHHHHHHHHHhCC-CCC
Confidence 999999999999999999999999999999999999999999999999999999998 589999999999999995 799
Q ss_pred eEEeeecccCCCCCCCCcccchHHHHHHHHHhc
Q 007947 549 WMHIDIAGPVWSEKMRSATGFGISTMVEWVLKN 581 (583)
Q Consensus 549 WaHlDIAG~a~~~~~kgaTG~gVrtL~~~l~~~ 581 (583)
|+|||||||+|..+++|+||||||||++|+++.
T Consensus 488 WaHlDIAG~a~~~~~~gaTG~gVr~L~~~~~~~ 520 (528)
T 3kr4_A 488 WAHIDIAGVSWNFKARKPKGFGVRLLTEFVLND 520 (528)
T ss_dssp EEEEECTTTSEETTTTEECCTTHHHHHHHHHHC
T ss_pred EEEEECCCCccCCCCCCceehhHHHHHHHHHhh
Confidence 999999999998888899999999999999875
No 5
>3pei_A Cytosol aminopeptidase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich; HET: MSE; 2.70A {Francisella tularensis subsp}
Probab=100.00 E-value=7.8e-145 Score=1171.69 Aligned_cols=474 Identities=31% Similarity=0.477 Sum_probs=406.0
Q ss_pred eEEEeecCCcccccccEEEEEEecCCCCCCCCcccchhHHHHHHHHhhHHHHHHHhcCCCCCCCCcEEEEecCCCCccEE
Q 007947 79 ISFAAKEVDVVEWKGDILAVGVTEKDMGKDDNSKFQNSILKKLDAQLGGLLSEASSEEDFTGKAGQSTVIRLPGIGSKRV 158 (583)
Q Consensus 79 ~~~~~~~~~~~~~~~D~LVVgV~e~~~~~~~~s~~~~~~~~~ld~~l~g~Ls~~~~~~~f~Gk~Ge~~~l~~~~~~~~rv 158 (583)
|+|+.++.. ++++|+|||+|++++ .+++... .+.++++++..+|+||.||++.++.++ +|+
T Consensus 2 M~~~~~~~~--~~~~d~lvv~v~~~~--------~l~~~~~------~~~l~~~~~~~~f~gk~G~~~~l~~~~---~~v 62 (486)
T 3pei_A 2 MKIVVNNQS--TLAAELMIVAQENLQ--------KLVEQTK------CPNSKALLDRRIFKAKSGEVLPLLHGD---KIV 62 (486)
T ss_dssp CEEEEESSC--CSSEEEEEECGGGHH--------HHHHHC--------------CTTTSCCCCTTCEEEECCSS---SEE
T ss_pred eEEEEecCC--CCcCCEEEEEEeCCC--------ccCcccc------hHHHHHHHHhCCCCCCCCCEEEEeCCC---CeE
Confidence 556555544 688999999999873 1111111 678999999999999999998887554 899
Q ss_pred EEEecCCCC-CChHHHHHHHHHHHHHHHHcccCcEEEEecCCCCCCchhHHHHHHHHHHHHHhccccCccccCCCCCCCC
Q 007947 159 GLIGLGQSA-SRAGDFRSLGESVAAAAKAAQASNVAVVLASSDGLSDESKLTAASAVASGTVLGTFEDNRYRSESKKPVS 237 (583)
Q Consensus 159 llVGLGk~~-~~~~~~r~~~~a~a~~~k~~~~~~v~i~l~~~~~~~~~~~~~~~~a~aeG~~lg~Y~f~~yKs~~~~~~~ 237 (583)
++||||+.+ ++.+.+|++++++++.+++.+.+++.+.++.... .....+.+++++||+.|+.|+|++||++++++ .
T Consensus 63 ~lvGlG~~~~~~~~~~r~a~~~~~~~l~~~~~~~~~~~l~~~~~--~~~~~~~~~~~aeG~~l~~Y~f~~yks~~~~~-~ 139 (486)
T 3pei_A 63 ILLGLGLRQDFIASEYDKIIAKAAEQLKKLAIKEISVDIDYAFE--NDNVKQFTLDTVRALISETYVFDQLKTEKENY-S 139 (486)
T ss_dssp EEEECCCGGGCCGGGHHHHHHHHHHHHHHTTCCEEEEECTTSCS--SSCHHHHHHHHHHHHHHHTCCCCTTCSSCCCC-C
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHhhcCceEEEEEeccccc--ccchHHHHHHHHHHHHHcCcccccccCCCCCC-c
Confidence 999999976 7888999999999999999999999888875432 11234567889999999999999999987543 6
Q ss_pred ccEEEEEcCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhhhcCCceEEEEeCHHHHHHcCCCc
Q 007947 238 LKSVDIIGLGTGPELEKKLKYAEHVSSAVIFGRELVNSPANVLTPAVLAEEASKVASMYSDVLSATILDIEKCKELKMGS 317 (583)
Q Consensus 238 l~~v~~~~~~~~~~~~~~~~~~~~~a~~~~~aRdL~n~P~N~ltP~~~A~~a~~~~~~~~~~~~v~V~d~~~l~~~gmg~ 317 (583)
++++.++.. ...+.++++++++++++|+++||||+|+|||+|||++||+++++++++++ |++|+|+|++||+++|||+
T Consensus 140 ~~~~~l~~~-~~~~~~~~~~~~~~~a~~~~~aRdL~n~P~n~~~P~~~a~~a~~l~~~~~-g~~v~V~~~~~l~~~gmg~ 217 (486)
T 3pei_A 140 LEQIELVYS-GDQDIEDSAKIGSAIACGQNYAKDLQNLPANICTTDYMLNEARELTSKYA-TFSLDYLDQDAMAELGMGC 217 (486)
T ss_dssp CCEEEEECC-SSSCCHHHHHHHHHHHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTCT-TEEEEEECHHHHHHTTCHH
T ss_pred ccEEEEecC-ChHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCHHHHHHHHHHHHhhcC-CceEEEEeHHHHHhCCCCc
Confidence 778887742 22445678999999999999999999999999999999999999999984 4999999999999999999
Q ss_pred hhhhcccCCCCCeEEEEEEcCCCCCCCceEEEEecceeecCCCCCCCCCCcccccccccccchHHHHHHHHHHHHhcCCC
Q 007947 318 YLGVAAASANLPHFIHLCYKPPGGSAKIKLALVGKGLTFDSGGYNIKTGPGCLIENMKYDMGGAAAVLGAAKAIGQIKPP 397 (583)
Q Consensus 318 llaV~~GS~~pPrli~l~Y~g~~~~~~~~i~LVGKGiTFDsGG~slKp~~~~~M~~MK~DM~GAAaVlga~~aia~lklp 397 (583)
||+|||||.+|||||+|+|+| +++.+++|+|||||||||||||||||+. +|++||+||+|||+|+|+|+++++||+|
T Consensus 218 ~laVg~gS~~pPrli~l~y~g-~~~~~~~i~LVGKGiTFDsGG~slKp~~--~M~~Mk~DM~GAAaVlg~~~a~a~l~l~ 294 (486)
T 3pei_A 218 ALAVGRGSYMSNYTVCMEYKG-GNEGDAPIVLVGKGLVFDNGGICIKQAA--GMDSMKMDMGGVAAVMGTMKAIAMLNLP 294 (486)
T ss_dssp HHHHHTTCSSCCEEEEEEEEC-SCTTSCCEEEEEEEEETEECC--------------EECSHHHHHHHHHHHHHHHHTCS
T ss_pred EEEeccCCCCCCEEEEEEECC-CCCCCCcEEEEccceEEecCCcccCCcc--chhhhhccchHHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999 4556789999999999999999999998 8999999999999999999999999999
Q ss_pred ceEEEEEEeecccCCCCCCCCCCcEEEccCCcEEEeecCCccCceehhhhhhHHHhcCCCeEEEecchhHHHHHhhCCCe
Q 007947 398 GVEVHFIVAACENMISGTGMRPGDIITAANGKTIEVNNTDAEGRLTLADALIYACNQGVDKVIDLATLTGACVVALGPSV 477 (583)
Q Consensus 398 ~vnV~~ii~~~ENm~sg~A~rPGDVvts~~GkTVEV~NTDAEGRLvLADaL~Ya~~~~p~~iIDiATLTGA~~vALG~~~ 477 (583)
|||+++||+|||||||+|||||||||+||||||||.||||||||||||+|+||++++|+.|||+|||||||++|||+++
T Consensus 295 -vnv~~~i~~~ENm~sg~A~rPgDVits~~G~TVEV~NTDAEGRLvLADaL~ya~~~~p~~iiD~ATLTGA~~vALG~~~ 373 (486)
T 3pei_A 295 -VNVVGVMGLAENAVDARSYRPGDVLKSMKGITVEVSNTDAEGRLVLCDTLTYIGKYKPKAVIDLATLTGAMIISLGDAY 373 (486)
T ss_dssp -SEEEEEEEEEEC------CCTTEEEECTTCCEEEECCGGGHHHHHHHHHHHHGGGGCCSEEEEEECCCTHHHHHHTTSC
T ss_pred -cEEEEEEEeeccCCCCCCCCCCCEEEeCCCcEEEEeccCcccceeehhHHHHHHhhCCCEEEEehhhHHHHHHHhCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeCCHHHHHHHHHHHHHhCCceeeCCCChhHHhhccCcccccccCC-CCCCchhHHHHHHhhccCCCCCeEEeeecc
Q 007947 478 AGAFTPSDDLANEVMAASQVSGEKIWRMPLEESYWEMMKSGVADMVNTG-GRQGGAITAALFLKQYVDEKVQWMHIDIAG 556 (583)
Q Consensus 478 agvfsn~~~l~~~l~~ag~~~gE~~WrlPl~~~y~~~lkS~vADl~N~g-~~~~gaitAA~FL~~Fv~~~~~WaHlDIAG 556 (583)
+|+|+|||+|+++|++||+.+||++||||||++|+++|||++|||+|+| +|+||+||||+||++||+ ++||+||||||
T Consensus 374 ~g~~sn~d~l~~~l~~ag~~~ge~~WrlPl~~~y~~~l~S~~ADl~N~g~~~~~g~itAA~FL~~Fv~-~~~W~HlDIAG 452 (486)
T 3pei_A 374 SGMFANSDKLANSLEQAANASNDLIWRLPLHKPYLKKIESKVADMDNCGRDRSAGSIVAALFLSKFTE-DYEWAHLDIAG 452 (486)
T ss_dssp EEEEESCHHHHHHHHHHHHHHCCCEEECCCCGGGGGGGCCSSSSEESSCSSSTTHHHHHHHHHHTTCT-TSCEEEEECHH
T ss_pred eEEEeCCHHHHHHHHHHHHHHCCCeEeCCCCHHHHHHCCCCeeeeeCCCCCCCcchHHHHHHHHHhCC-CCCEEEEecCC
Confidence 9999999999999999999999999999999999999999999999999 799999999999999995 68999999999
Q ss_pred cCCCC-CCCCcccchHHHHHHHHHhc
Q 007947 557 PVWSE-KMRSATGFGISTMVEWVLKN 581 (583)
Q Consensus 557 ~a~~~-~~kgaTG~gVrtL~~~l~~~ 581 (583)
|+|.+ .++|+||+|||||++|++++
T Consensus 453 ~a~~~~~~~g~TG~~vr~L~~~l~~~ 478 (486)
T 3pei_A 453 SAMGDFASCKASGRPVPLLVHYLISQ 478 (486)
T ss_dssp HHHCC-CCCCCCCTTHHHHHHHHHHH
T ss_pred CCcCCCCCCCcccHHHHHHHHHHHHH
Confidence 99965 47899999999999999875
No 6
>3kzw_A Cytosol aminopeptidase; hydrolase, manganese binding, protease, structural genomics; 2.70A {Staphylococcus aureus subsp}
Probab=100.00 E-value=3.6e-144 Score=1167.01 Aligned_cols=489 Identities=28% Similarity=0.420 Sum_probs=432.8
Q ss_pred CCCCCCCCeeeEEEeecCCcccccccEEEEEEecCCCCCCCCcccchhHHHHHHHHhhHHHHHHHhcCCCCCCCCcEEEE
Q 007947 69 TKPAQIDPLKISFAAKEVDVVEWKGDILAVGVTEKDMGKDDNSKFQNSILKKLDAQLGGLLSEASSEEDFTGKAGQSTVI 148 (583)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~D~LVVgV~e~~~~~~~~s~~~~~~~~~ld~~l~g~Ls~~~~~~~f~Gk~Ge~~~l 148 (583)
+.+.|++.|.++| .+.. ....|+|||+++++... .+....+|+.+++.|+++.++++|+||.|++..+
T Consensus 17 ~~~~~~~~m~~~~--~~~~--~~~~d~lvig~~~~~~~--------~~~~~~~Deal~g~L~~l~~~~~F~gk~G~~~~~ 84 (515)
T 3kzw_A 17 NLYFQSNAMNFKL--NNTL--SNEINTLIIGIPEHLNQ--------LERISFNHIDITESLERLKHQHIIGSKVGKIYTT 84 (515)
T ss_dssp -----CCSEEEEE--SCCC--CTTCCEEEEEEESCGGG--------SCCCEETTEECHHHHHHHHHTTSSCCSBTCEEEE
T ss_pred cCccchhceeEEe--ccCC--CCCCCEEEEEEeCCccc--------ccchHHHHHHHHHHHHHHHhcCccCCCCCCeEEE
Confidence 4567777655555 4332 35789999999998421 1123457888999999999999999999997665
Q ss_pred ec-CCCCccEEEEEecCCCC-CChHHHHHHHHHHHHHHHHcccCcEEEEecCCCCCCchhHHHHHHHHHHHHHhccccCc
Q 007947 149 RL-PGIGSKRVGLIGLGQSA-SRAGDFRSLGESVAAAAKAAQASNVAVVLASSDGLSDESKLTAASAVASGTVLGTFEDN 226 (583)
Q Consensus 149 ~~-~~~~~~rvllVGLGk~~-~~~~~~r~~~~a~a~~~k~~~~~~v~i~l~~~~~~~~~~~~~~~~a~aeG~~lg~Y~f~ 226 (583)
.. .+...+||++||||+.+ ++.+.+|++++++++.+++.+.+++.+.+++.... .....+.++++++|+.++.|+|+
T Consensus 85 ~~~~~~~~~rvllvGlGk~~~~~~~~~r~~~~~~~~~l~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~l~~Y~f~ 163 (515)
T 3kzw_A 85 AFDVQDQTYRLITVGLGNLKTRSYQDMLKIWGHLFQYIKSEHIEDTYLLMDSFISK-YDQLSDVLMACGIQSERATYEFD 163 (515)
T ss_dssp EEEETTEEEEEEEEEEECSTTCCHHHHHHHHHHHHHHHHHTTCCEEEEEGGGTCCS-SSCHHHHHHHHHHHHHHTTCCCC
T ss_pred EecCCCCcCEEEEEEcCCcccCCHHHHHHHHHHHHHHHhhcCCceEEEEccccccc-ccCHHHHHHHHHHHHHhCceecc
Confidence 43 35578999999999987 89999999999999999999999999988865421 12245678889999999999999
Q ss_pred cccCCCCCCCCccEEEEEcCCCchHHH-HHHHHHHHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhhhcCCceEEEEe
Q 007947 227 RYRSESKKPVSLKSVDIIGLGTGPELE-KKLKYAEHVSSAVIFGRELVNSPANVLTPAVLAEEASKVASMYSDVLSATIL 305 (583)
Q Consensus 227 ~yKs~~~~~~~l~~v~~~~~~~~~~~~-~~~~~~~~~a~~~~~aRdL~n~P~N~ltP~~~A~~a~~~~~~~~~~~~v~V~ 305 (583)
+||++++++ ...++.+.. .++.+ +++++++++++|+++||||+|+|||+|||++||+++++++++++ ++|+|+
T Consensus 164 ~yks~~~~~-~~~~l~~~~---~~~~~~~~~~~~~~~a~~~~~aRdL~n~P~n~ltP~~~a~~a~~~~~~~g--~~v~V~ 237 (515)
T 3kzw_A 164 HYKSSKKAP-FKTNLNLIS---ESLIELDFIHEGISIGQSINLARDFSNMPPNVLTPQTFAEDIVNHFKNTK--VKVDVK 237 (515)
T ss_dssp TTCTTCCCC-CCEEEEEEC---SSCCCCHHHHHHHHHHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHSTTSS--CEEEEE
T ss_pred cccCCCCCC-cceEEEEcC---cchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHhcC--cEEEEE
Confidence 999987654 333444432 12333 67999999999999999999999999999999999999999875 999999
Q ss_pred CHHHHHHcCCCchhhhcccCCCCCeEEEEEEcCCCCCCCceEEEEecceeecCCCCCCCCCCcccccccccccchHHHHH
Q 007947 306 DIEKCKELKMGSYLGVAAASANLPHFIHLCYKPPGGSAKIKLALVGKGLTFDSGGYNIKTGPGCLIENMKYDMGGAAAVL 385 (583)
Q Consensus 306 d~~~l~~~gmg~llaV~~GS~~pPrli~l~Y~g~~~~~~~~i~LVGKGiTFDsGG~slKp~~~~~M~~MK~DM~GAAaVl 385 (583)
|++||+++|||+||+|||||.+|||||+|+|+|. ++.+++|+|||||||||||||||||+. +|++||+||+|||+|+
T Consensus 238 ~~~~l~~~gmg~~laVg~gS~~pPrli~l~y~g~-~~~~~~i~LVGKGiTFDsGG~slKp~~--~M~~MK~DM~GAAaVl 314 (515)
T 3kzw_A 238 DYDTLVSEGFGLLQAVGKGSKHKPRLVTITYNGK-DKDEAPIALVGKGITYDSGGYSIKTKN--GMATMKFDMCGAANVV 314 (515)
T ss_dssp CHHHHHHTTCHHHHHHHTTSSSCCEEEEEEEESS-CSSCCCEEEEEEEEEEECCTTSCCCHH--HHTTGGGGGHHHHHHH
T ss_pred cHHHHHHcCCCcEEEEccCCCCCCEEEEEEECCC-CCCCCcEEEecCceEEecCCcCCCCcc--ChhhchhchHHHHHHH
Confidence 9999999999999999999999999999999994 556789999999999999999999988 8999999999999999
Q ss_pred HHHHHHHhcCCCceEEEEEEeecccCCCCCCCCCCcEEEccCCcEEEeecCCccCceehhhhhhHHHhcCCCeEEEecch
Q 007947 386 GAAKAIGQIKPPGVEVHFIVAACENMISGTGMRPGDIITAANGKTIEVNNTDAEGRLTLADALIYACNQGVDKVIDLATL 465 (583)
Q Consensus 386 ga~~aia~lklp~vnV~~ii~~~ENm~sg~A~rPGDVvts~~GkTVEV~NTDAEGRLvLADaL~Ya~~~~p~~iIDiATL 465 (583)
|+|+|+++||+| +||+++||+|||||||+|||||||||+||||||||.||||||||||||+|+||++++|+.|||+|||
T Consensus 315 g~~~a~a~l~lp-vnv~~~i~~~ENm~sg~A~rPgDVits~~GkTVEV~NTDAEGRLvLADaL~yA~~~~p~~iiD~ATL 393 (515)
T 3kzw_A 315 GIIEAASRLQLP-VNIVGVLACAENMINEASMKPDDVFTALSGETVEVMNTDAEGRLVLADAVFYANQYQPSVIMDFATL 393 (515)
T ss_dssp HHHHHHHHTTCS-CEEEEEEEEEEECCCTTCCCTTCEEECTTSCEEECSCTTCCHHHHHHHHHHHHHTTCCSEEEEEECC
T ss_pred HHHHHHHHcCCC-ceEEEEEEeeccCCCCCCCCCCCEEEeCCCCEEEecCCCcchheehHHHHHHHhhcCCCEEEEeecc
Confidence 999999999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhCCCeEEEeeC-CHHHHHHHHHHHHHhCCceeeCCCChhHHhhc-cCcccccccCCCCCCchhHHHHHHhhcc
Q 007947 466 TGACVVALGPSVAGAFTP-SDDLANEVMAASQVSGEKIWRMPLEESYWEMM-KSGVADMVNTGGRQGGAITAALFLKQYV 543 (583)
Q Consensus 466 TGA~~vALG~~~agvfsn-~~~l~~~l~~ag~~~gE~~WrlPl~~~y~~~l-kS~vADl~N~g~~~~gaitAA~FL~~Fv 543 (583)
||||++|||++++|+|+| ||+|++++.+||+.+||++||||||++|++++ +|++|||+|+|+|+||+||||+||++||
T Consensus 394 TGA~~vALG~~~ag~~~~n~d~l~~~l~~a~~~~ge~~WrlPl~~~y~~~l~~S~vADl~N~g~~~ggaitAA~FL~~Fv 473 (515)
T 3kzw_A 394 TGAAIVALGDDKAAAFESNSKVILNDILQISSEVDEMVFELPITATERASIKHSDIADLVNHTNGQGKALFAASFVTHFS 473 (515)
T ss_dssp CHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCEEECCCCHHHHHHTTCCSSSSEESCCSSSCHHHHHHHHHHGGG
T ss_pred hHHHHHHcCCceeEEeeCChHHHHHHHHHHHHHhCCceecCCCCHHHHHhhcCCCcccccCCCCCchhhHHHHHHHHHhC
Confidence 999999999999999986 69999999999999999999999999999998 7999999999999999999999999999
Q ss_pred CCCCCeEEeeecccCCCCC-----CCCcccchHHHHHHHHHhc
Q 007947 544 DEKVQWMHIDIAGPVWSEK-----MRSATGFGISTMVEWVLKN 581 (583)
Q Consensus 544 ~~~~~WaHlDIAG~a~~~~-----~kgaTG~gVrtL~~~l~~~ 581 (583)
+ ++||+|||||||||.++ ++|+||||||||+|||+++
T Consensus 474 ~-~~~W~HlDIAG~a~~~~~~~~~~kGaTG~~vrtL~~~l~~~ 515 (515)
T 3kzw_A 474 G-QTPHIHFDIAGPATTNKASYNGPKGPTGFMIPTIVQWLKQQ 515 (515)
T ss_dssp T-TSCEEEEECTTTTEESSCBTTBSSEECCTTHHHHHHHHTTC
T ss_pred C-CCCEEEEECCccCccCCCCCCCCCCcccccHHHHHHHHHhC
Confidence 5 79999999999999765 4899999999999999874
No 7
>1lam_A Leucine aminopeptidase; exopeptidase, metallopeptidase, hydrolase (A aminoacylpeptide); 1.60A {Bos taurus} SCOP: c.56.5.3 c.50.1.1 PDB: 1lan_A 1lcp_A* 1lap_A 1bpn_A 1bpm_A 1bll_E* 2j9a_A* 2ewb_A*
Probab=100.00 E-value=8.3e-142 Score=1152.69 Aligned_cols=466 Identities=34% Similarity=0.481 Sum_probs=417.5
Q ss_pred cEEEEEEecCCCCCCCCcccchhHHHHHHHHhhHHHHHHHhcCCCCCCCCcEEEEecCCCCccEEEEEecCCCCC-----
Q 007947 94 DILAVGVTEKDMGKDDNSKFQNSILKKLDAQLGGLLSEASSEEDFTGKAGQSTVIRLPGIGSKRVGLIGLGQSAS----- 168 (583)
Q Consensus 94 D~LVVgV~e~~~~~~~~s~~~~~~~~~ld~~l~g~Ls~~~~~~~f~Gk~Ge~~~l~~~~~~~~rvllVGLGk~~~----- 168 (583)
++|||+|++++..++ ...+++..+.+|+.+.+.++++++..+|+||.||++.++.++...+|+++||||+...
T Consensus 2 ~~lvvgv~~~~~~~~--~~~l~~~~~~~~~~~~~~l~~~~~~~~f~gk~g~~~~~~~~~~~~~~v~lvGlG~~~~~~~~~ 79 (484)
T 1lam_A 2 KGLVLGIYSKEKEED--EPQFTSAGENFNKLVSGKLREILNISGPPLKAGKTRTFYGLHEDFPSVVVVGLGKKTAGIDEQ 79 (484)
T ss_dssp EEEEEEECCCCTTCS--SCCBCHHHHHHHHHTTTHHHHHHHHTCSCCCTTCEEEEEEEETTEEEEEEEECCCTTCCEETT
T ss_pred cEEEEEEecCCcccc--ccccCHHHHHHhHHhHHHHHHHHHhCCCCCCCCcEEEEeCCCCCcCEEEEEEeCcchhcccch
Confidence 689999998752110 0124566788999999999999999999999999998876544779999999998753
Q ss_pred -----ChHHHHHHHHHHHHHHHHcccCcEEEEecCCCCCCchhHHHHHHHHHHHHHhccccCccccCCCCCCCCccEEEE
Q 007947 169 -----RAGDFRSLGESVAAAAKAAQASNVAVVLASSDGLSDESKLTAASAVASGTVLGTFEDNRYRSESKKPVSLKSVDI 243 (583)
Q Consensus 169 -----~~~~~r~~~~a~a~~~k~~~~~~v~i~l~~~~~~~~~~~~~~~~a~aeG~~lg~Y~f~~yKs~~~~~~~l~~v~~ 243 (583)
+.+.+|++.+++++.+++.+...+.+ ... +.+++++||+.|+.|+|++||+++++ +.++.+
T Consensus 80 ~~~~~~~~~~r~a~~~~~~~l~~~~~~~~~~--~~~---------~~~~~~a~G~~l~~Y~f~~~k~~~~~---~~~~~~ 145 (484)
T 1lam_A 80 ENWHEGKENIRAAVAAGCRQIQDLEIPSVEV--DPC---------GDAQAAAEGAVLGLYEYDDLKQKRKV---VVSAKL 145 (484)
T ss_dssp TTEEHHHHHHHHHHHHHHHHHHHTTCSEEEE--CCT---------TCHHHHHHHHHHHHCCCCTTCSSCCC---CCEEEE
T ss_pred hccccCHHHHHHHHHHHHHHHhhcCCeEEEe--CCc---------hHHHHHHHHHHHhCcccCccccCCCC---CceEEE
Confidence 34678888888888888877765544 221 13578899999999999999976533 345666
Q ss_pred EcCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhhhcCCceEEEEeCHHHHHHcCCCchhhhcc
Q 007947 244 IGLGTGPELEKKLKYAEHVSSAVIFGRELVNSPANVLTPAVLAEEASKVASMYSDVLSATILDIEKCKELKMGSYLGVAA 323 (583)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~a~~~~~aRdL~n~P~N~ltP~~~A~~a~~~~~~~~~~~~v~V~d~~~l~~~gmg~llaV~~ 323 (583)
+.. +.+..+++++++++|+++||||+|+|||+|||++||++++++++++++.++|+|+|++||+++|||+||+|||
T Consensus 146 ~~~----~~~~~~~~~~~~a~~~~laRdLvn~P~N~~tP~~lA~~a~~l~~~~g~~~~v~Vl~~~~l~~~gmg~~laVg~ 221 (484)
T 1lam_A 146 HGS----EDQEAWQRGVLFASGQNLARRLMETPANEMTPTKFAEIVEENLKSASIKTDVFIRPKSWIEEQEMGSFLSVAK 221 (484)
T ss_dssp SSS----SCHHHHHHHHHHHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHHHCSSEEEEEECHHHHHHTTCHHHHHHHT
T ss_pred ecc----hhHHHHHHHHHHHHHHHHHHHhhCCChhhcCHHHHHHHHHHHHHHcCCceEEEEEeHHHHHHCCCCceeeecc
Confidence 531 2356789999999999999999999999999999999999999988533999999999999999999999999
Q ss_pred cCCCCCeEEEEEEcCCCCCCCceEEEEecceeecCCCCCCCCCCcccccccccccchHHHHHHHHHHHHhcCCCceEEEE
Q 007947 324 ASANLPHFIHLCYKPPGGSAKIKLALVGKGLTFDSGGYNIKTGPGCLIENMKYDMGGAAAVLGAAKAIGQIKPPGVEVHF 403 (583)
Q Consensus 324 GS~~pPrli~l~Y~g~~~~~~~~i~LVGKGiTFDsGG~slKp~~~~~M~~MK~DM~GAAaVlga~~aia~lklp~vnV~~ 403 (583)
||.+|||||+|+|+|++++.++||+|||||||||||||||||+. +|++||+||+|||+|+|+|+++++||+| +||++
T Consensus 222 GS~~pPrli~l~y~g~~~~~~~~i~LVGKGITFDsGG~slKp~~--~M~~MK~DMgGAAaVlg~~~aia~l~l~-vnv~~ 298 (484)
T 1lam_A 222 GSEEPPVFLEIHYKGSPNASEPPLVFVGKGITFDSGGISIKAAA--NMDLMRADMGGAATICSAIVSAAKLDLP-INIVG 298 (484)
T ss_dssp TSSSCCEEEEEEEECSSSTTSCCEEEEECEEEEECCTTSCCCST--TGGGGGGTTHHHHHHHHHHHHHHHTTCS-SEEEE
T ss_pred CCCCCCeEEEEEECCCCCCCCCcEEEEecceEEcCCCcCCcCcc--chhhhhccchHHHHHHHHHHHHHHcCCC-eeEEE
Confidence 99999999999999943134678999999999999999999998 8999999999999999999999999999 99999
Q ss_pred EEeecccCCCCCCCCCCcEEEccCCcEEEeecCCccCceehhhhhhHHHhcCCCeEEEecchhHHHHHhhCCCeEEEeeC
Q 007947 404 IVAACENMISGTGMRPGDIITAANGKTIEVNNTDAEGRLTLADALIYACNQGVDKVIDLATLTGACVVALGPSVAGAFTP 483 (583)
Q Consensus 404 ii~~~ENm~sg~A~rPGDVvts~~GkTVEV~NTDAEGRLvLADaL~Ya~~~~p~~iIDiATLTGA~~vALG~~~agvfsn 483 (583)
+||+|||||||+|||||||||+||||||||.||||||||||||+|+||++++|+.|||+|||||||++|||++++|+|+|
T Consensus 299 ~i~~~ENm~sg~A~rPgDVits~~GkTVEV~NTDAEGRLVLADaL~yA~~~~p~~iiD~ATLTGA~~vALG~~~ag~~sn 378 (484)
T 1lam_A 299 LAPLCENMPSGKANKPGDVVRARNGKTIQVDNTDAEGRLILADALCYAHTFNPKVIINAATLTGAMDIALGSGATGVFTN 378 (484)
T ss_dssp EEEEEEECCSTTSCCTTEEEECTTSCEEEESCTTCCHHHHHHHHHHHHHTTCCSEEEEEECCCHHHHHHHTTSCEEEEES
T ss_pred EEEeeccCCCCCCCCCCCEEEeCCCcEEEeecCCccceeeehhHHHHhhhcCCCEEEEecchHHHHHHHhCCCceEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCceeeCCCChhHHhhccCc-ccccccCCC-CCCchhHHHHHHhhccCCCCCeEEeeecccCCCC
Q 007947 484 SDDLANEVMAASQVSGEKIWRMPLEESYWEMMKSG-VADMVNTGG-RQGGAITAALFLKQYVDEKVQWMHIDIAGPVWSE 561 (583)
Q Consensus 484 ~~~l~~~l~~ag~~~gE~~WrlPl~~~y~~~lkS~-vADl~N~g~-~~~gaitAA~FL~~Fv~~~~~WaHlDIAG~a~~~ 561 (583)
||+|+++|++||+.+||++||||||++|+++|+|+ +|||+|+|+ |+||+||||+||++||+ ++||+|||||||+|.+
T Consensus 379 ~d~l~~~l~~Ag~~~ge~~WrlPl~~~y~~~l~s~~~ADl~N~g~~~~~GsitAA~FL~~Fv~-~~~WaHlDIAG~a~~~ 457 (484)
T 1lam_A 379 SSWLWNKLFEASIETGDRVWRMPLFEHYTRQVIDCQLADVNNIGKYRSAGACTAAAFLKEFVT-HPKWAHLDIAGVMTNK 457 (484)
T ss_dssp CHHHHHHHHHHHHHHSCCEEECCCCHHHHHHHHCCSSSSEESSCSSSTTHHHHHHHHHHTTCC-CSSEEEEECGGGSEES
T ss_pred CHHHHHHHHHHHHHHCCcEeecCCCHHHHHhcCCCCEeeeeCCCCCCCcchHHHHHHHHHhCC-CCCEEEEEcCcccccC
Confidence 99999999999999999999999999999999987 999999986 89999999999999995 7999999999999965
Q ss_pred C-----CCCcccchHHHHHHHHHhccC
Q 007947 562 K-----MRSATGFGISTMVEWVLKNSC 583 (583)
Q Consensus 562 ~-----~kgaTG~gVrtL~~~l~~~~~ 583 (583)
+ ++|+||+|||||++||++++|
T Consensus 458 ~~~~~~~kG~TG~~vrtL~~~l~~~~~ 484 (484)
T 1lam_A 458 DEVPYLRKGMAGRPTRTLIEFLFRFSQ 484 (484)
T ss_dssp SSSTTSCSEECCTTHHHHHHHHHHHHC
T ss_pred CCCCCCCCCcEeHHHHHHHHHHHHhcC
Confidence 4 479999999999999998875
No 8
>3ij3_A Cytosol aminopeptidase; PEPB, peptidase M17 family, IDP01962 aminopeptidase, hydrolase, manganese, metal-binding, protea structural genomics; HET: PGE PG4; 1.80A {Coxiella burnetii}
Probab=100.00 E-value=7.5e-133 Score=1070.42 Aligned_cols=427 Identities=30% Similarity=0.442 Sum_probs=375.0
Q ss_pred HHHHHhhHHHHHHHhcCCCCCCCCcEEEEecCCCCccEEEEEecCCCCCChHHHHHHHHHHHHHHHHcccCcEEEEecCC
Q 007947 120 KLDAQLGGLLSEASSEEDFTGKAGQSTVIRLPGIGSKRVGLIGLGQSASRAGDFRSLGESVAAAAKAAQASNVAVVLASS 199 (583)
Q Consensus 120 ~ld~~l~g~Ls~~~~~~~f~Gk~Ge~~~l~~~~~~~~rvllVGLGk~~~~~~~~r~~~~a~a~~~k~~~~~~v~i~l~~~ 199 (583)
...+.+.+.+.++++..+|+||.||++.++.++. ..++++||||+... |.. ++..+++++.....+.++..
T Consensus 50 ~~~~~~~~~~~~~l~~~~f~gk~G~~~~lp~~~g-~~~~~lvGlG~~~~-----r~a---~g~~ar~L~~g~~~~~~~~~ 120 (482)
T 3ij3_A 50 DWLDTQDARTQQWVKASGFVGLAGTICSIPESTG-ALQRVLLGVSDYEY-----SWD---FGGLSKVLPPGAFQLNRDDF 120 (482)
T ss_dssp HHHTTSCHHHHHHHHHHTCCCCTTCEEEEECTTS-SEEEEEEECSSTTC-----CGG---GGGHHHHCCSEEEECCGGGS
T ss_pred hHHhhhhHHHHHHHHhCCCCCCCCCEEEEecCCC-ceEEEEEEeCChhH-----HHH---HHHHHHhcccCcEEEecccc
Confidence 3444577889999999999999999998876542 34689999998642 322 34445555543343322211
Q ss_pred CCCCchhHHHHHHHHHHHHHhccccCccccCCCCCCCCccEEEEEcCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 007947 200 DGLSDESKLTAASAVASGTVLGTFEDNRYRSESKKPVSLKSVDIIGLGTGPELEKKLKYAEHVSSAVIFGRELVNSPANV 279 (583)
Q Consensus 200 ~~~~~~~~~~~~~a~aeG~~lg~Y~f~~yKs~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~a~~~~~aRdL~n~P~N~ 279 (583)
. ....+++++||+.|+.|+|++||++++++ .++ ... +. . . ++++++++++++||||+|+|+|+
T Consensus 121 --~----~~~~~~~~aeG~~Lg~Y~f~~yks~~~~~---~~l--~~~---~~-~-~-~~~~~~a~~~~laRdLvn~P~N~ 183 (482)
T 3ij3_A 121 --E----DDEYYERALLAFGLGSYQFNAYRKRSPYL---AKL--FLP---QA-H-R-KRVTDWLTTIYLIRDLINTPAED 183 (482)
T ss_dssp --S----SHHHHHHHHHHHHHTTCCCCSSSCCCCCS---EEE--ECC---HH-H-H-HHHHHHHHHHHHHHHHHHSCGGG
T ss_pred --C----ChHHHHHHHHHHHhcceecccccCCCCCC---cEE--Eec---ch-h-H-HHHHHHHHHHHHHHHHhcCCccc
Confidence 0 12467889999999999999999986533 233 321 12 1 2 78999999999999999999999
Q ss_pred CChHHHHHHHHHHhhhcCCceEEEEeCHHHHHHcCCCchhhhcccCCCCCeEEEEEEcCCCCCCCceEEEEecceeecCC
Q 007947 280 LTPAVLAEEASKVASMYSDVLSATILDIEKCKELKMGSYLGVAAASANLPHFIHLCYKPPGGSAKIKLALVGKGLTFDSG 359 (583)
Q Consensus 280 ltP~~~A~~a~~~~~~~~~~~~v~V~d~~~l~~~gmg~llaV~~GS~~pPrli~l~Y~g~~~~~~~~i~LVGKGiTFDsG 359 (583)
|||++||+++++++++++ ++|+|+++++ +++|||+||+|||||.+|||||+|+|.+ +.+++|+|||||||||||
T Consensus 184 ~tP~~~A~~a~~la~~~g--~~v~V~~~~~-~~~gmg~~laVg~GS~~pPrli~l~y~~---~~~~~i~LVGKGITFDsG 257 (482)
T 3ij3_A 184 MGPSELAQAVKHVAKEFE--AKVKIIESKD-LETEFPAIYAVGRAGSRPPLLIDLKWGD---IKAPKVTLVGKGVCFDSG 257 (482)
T ss_dssp SSHHHHHHHHHHHHHHHT--CEEEEEEHHH-HHHHCHHHHHHHTTSSSCCEEEEEEESC---TTSCEEEEEECEEEEECC
T ss_pred cCHHHHHHHHHHHHHHcC--CeEEEEchHH-HHcCCCcEEEEccCCCCCCEEEEEEeCC---CCCCeEEEEccceEeecC
Confidence 999999999999999986 9999999999 8899999999999999999999999954 236899999999999999
Q ss_pred CCCCCCCCcccccccccccchHHHHHHHHHHHHhcCCCceEEEEEEeecccCCCCCCCCCCcEEEccCCcEEEeecCCcc
Q 007947 360 GYNIKTGPGCLIENMKYDMGGAAAVLGAAKAIGQIKPPGVEVHFIVAACENMISGTGMRPGDIITAANGKTIEVNNTDAE 439 (583)
Q Consensus 360 G~slKp~~~~~M~~MK~DM~GAAaVlga~~aia~lklp~vnV~~ii~~~ENm~sg~A~rPGDVvts~~GkTVEV~NTDAE 439 (583)
||||||+. +|++||+||+|||+|+|+|+++++||+| +||+++||+|||||||+|||||||||++|||||||.|||||
T Consensus 258 GlslKp~~--~M~~MK~DMgGAAaVlg~~~aia~l~lp-vnv~~ii~~~ENm~sg~A~rPgDVits~~GkTVEV~NTDAE 334 (482)
T 3ij3_A 258 GLDIKTPG--GMLLMKKDMGGAAHALGLARMIMLQQLP-VRLRLLIPAVENAIGSRSYRPGDVVQTRARKTIEITNTDAE 334 (482)
T ss_dssp TTSCCCHH--HHTTGGGGGHHHHHHHHHHHHHHHTTCS-SEEEEEEEEEEECCSTTCCCTTCEEECTTSCEEECSCTTCC
T ss_pred CccCcCcc--chhhccccchHHHHHHHHHHHHHHcCCC-ceEEEEEEeeccCCCCCCCCCCCEEEeCCCCEEEEecCCcc
Confidence 99999988 8999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred CceehhhhhhHHHhcCCCeEEEecchhHHHHHhhCCCeEEEeeCCHHHHHHHHHHHHHhCCceeeCCCChhHHhhccCcc
Q 007947 440 GRLTLADALIYACNQGVDKVIDLATLTGACVVALGPSVAGAFTPSDDLANEVMAASQVSGEKIWRMPLEESYWEMMKSGV 519 (583)
Q Consensus 440 GRLvLADaL~Ya~~~~p~~iIDiATLTGA~~vALG~~~agvfsn~~~l~~~l~~ag~~~gE~~WrlPl~~~y~~~lkS~v 519 (583)
|||||||+|+||++++|+.|||+|||||||++|||++++|+|+|||+|+++|++||+.+||++||||||++|+++|||++
T Consensus 335 GRLVLADaL~yA~~~~P~~iID~ATLTGA~~vALG~~~agv~sn~d~l~~~l~~Ag~~~ge~~WrlPl~~~y~~~l~S~v 414 (482)
T 3ij3_A 335 GRVVLADALAEAVKEDPDLIIDFSTLTGAARIALGPNLPALFANQDSLAQALIDASLKTDDPLWRLPLFQPYRNYLKSEV 414 (482)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEEEECCSGGGCTTCTTSCEEEESSHHHHHHHHHHHHHHTCCCEECCCCGGGGGGGCCSS
T ss_pred hhhhhHHHHHHHHhcCCCEEEEecchhhhHHHHhCCCceEEEeCCHHHHHHHHHHHHHHCCceeeCCCCHHHHHhcCCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCC-CCCCchhHHHHHHhhccCCCCCeEEeeecccCCCC---CCCCcccchHHHHHHHHHhc
Q 007947 520 ADMVNTG-GRQGGAITAALFLKQYVDEKVQWMHIDIAGPVWSE---KMRSATGFGISTMVEWVLKN 581 (583)
Q Consensus 520 ADl~N~g-~~~~gaitAA~FL~~Fv~~~~~WaHlDIAG~a~~~---~~kgaTG~gVrtL~~~l~~~ 581 (583)
|||+|+| +|+||+||||+||++||++++||+||||||..... .++|+||+|||||++||+++
T Consensus 415 ADl~N~g~~~~~GsitAA~FL~~Fv~~~~~WaHlDIAg~~~~~~~~~p~GatG~gvR~l~~~l~~~ 480 (482)
T 3ij3_A 415 ADLTNSSQNRMAGAITAALFLQHFVSDQIPWAHFDIFAWNLEDLPGRPIGGEAMALRAVFHYLEQQ 480 (482)
T ss_dssp SSEESSCSSSSCHHHHHHHHHHTTSCTTSCEEEEEECCEESSCBTTBCSEECCCSHHHHHHHHHHH
T ss_pred eeeeCCCCCCCcchhHHHHHHHHHcCCCCCeEEEEcccccCCCCCCCCCCchhHHHHHHHHHHHHh
Confidence 9999998 69999999999999999766799999999843222 35899999999999999875
No 9
>2hc9_A Leucine aminopeptidase 1; carbonate, structural genomics, P protein structure initiative, NEW YORK SGX research center structural genomics; 1.85A {Caenorhabditis elegans} PDB: 2hb6_A
Probab=100.00 E-value=1.1e-125 Score=1022.40 Aligned_cols=467 Identities=26% Similarity=0.354 Sum_probs=380.2
Q ss_pred eeEEEeecCCcccccccEEEEEEecCCCCCCCCcccchhHHHHHHHHhhHH---HHHHHhcCCCCCCCCcEEEEecCCCC
Q 007947 78 KISFAAKEVDVVEWKGDILAVGVTEKDMGKDDNSKFQNSILKKLDAQLGGL---LSEASSEEDFTGKAGQSTVIRLPGIG 154 (583)
Q Consensus 78 ~~~~~~~~~~~~~~~~D~LVVgV~e~~~~~~~~s~~~~~~~~~ld~~l~g~---Ls~~~~~~~f~Gk~Ge~~~l~~~~~~ 154 (583)
++.|+...........++||||++++.. ...+++.++++++..++. ++++++....++ +..+++ +.
T Consensus 3 ~~~~~~~~~~~d~~~~~vlVlG~~~~~~-----~~~~t~~~~k~~~r~~gk~~ll~~~l~~~~~~~---~~~~f~--~~- 71 (491)
T 2hc9_A 3 QVLVRNGIQAVGDGLTSLIIVGKKSVLK-----NVTFEGKFKEVAQKFVTDGDSWNSMISRIPASG---RHPLHY--EL- 71 (491)
T ss_dssp EEEEEESCCCCCSSCEEEEEEEEHHHHH-----HCCSCHHHHHHHTTTSCCHHHHHHHHHHSCSSE---EEESSS--SS-
T ss_pred eEEEecccccCCCccCcEEEEEeecccc-----CCCccHHHHHhhHhhccchHHHHHHHHhhCCCC---ceeEEe--cc-
Confidence 4556555555556688999999999731 123467788999888885 889999887777 332222 22
Q ss_pred ccEEEEEecCCCC---CChHHHHHHHHHHHHHHHHcccCcEEEEecCCCCCCchhHHHHHHHHHHHHH--hccccCcccc
Q 007947 155 SKRVGLIGLGQSA---SRAGDFRSLGESVAAAAKAAQASNVAVVLASSDGLSDESKLTAASAVASGTV--LGTFEDNRYR 229 (583)
Q Consensus 155 ~~rvllVGLGk~~---~~~~~~r~~~~a~a~~~k~~~~~~v~i~l~~~~~~~~~~~~~~~~a~aeG~~--lg~Y~f~~yK 229 (583)
..|++ ||++. .+.+.+..+.+.+..++.........++... + . .+++++|+. ...|.|++ |
T Consensus 72 -~~Vav--Lg~~~~~~n~~~~~~~~~e~vr~a~~~g~~~~~~~v~v~-~---~------~e~~a~~~a~~~~~~~f~~-k 137 (491)
T 2hc9_A 72 -AHLIT--VPDASSRGNTPTNAHSIYKELKPINYPEDTKNVHFVLFA-E---Y------PDVLSHVAAIARTFCKFSM-K 137 (491)
T ss_dssp -EEEEE--ECSCCCTTSCTTCHHHHHHHHTTCCCCTTCCEEEEEEEC-C---G------GGHHHHHHHHHTTSCCCCC-C
T ss_pred -cEEEE--ECCcccCCCCHHHHHHHHHHHHHHhcccCcCCceEEEEc-C---c------hhHHHHHHHHHHhccchhc-c
Confidence 34444 77764 2333333333322221110001222222221 1 1 123444443 34444554 5
Q ss_pred CCCCCCCCccEEEEEcCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhhhcCCceEEEEeCHHH
Q 007947 230 SESKKPVSLKSVDIIGLGTGPELEKKLKYAEHVSSAVIFGRELVNSPANVLTPAVLAEEASKVASMYSDVLSATILDIEK 309 (583)
Q Consensus 230 s~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~a~~~~~aRdL~n~P~N~ltP~~~A~~a~~~~~~~~~~~~v~V~d~~~ 309 (583)
++++++ ...+++++.... .++.++++.++++++++||||+|+|||+|||++||+++++++++++ ++|+|+|++|
T Consensus 138 ~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~a~~~~~aR~L~n~P~n~~tP~~~a~~a~~~~~~~g--~~v~V~~~~~ 211 (491)
T 2hc9_A 138 TSGIRE-LNVNIDVVCDKL---TNEDAVFLTDLSESVRETARLIDTPANILTTDALVDEAVKVGNATG--SKITVIRGEE 211 (491)
T ss_dssp SSCCCC-CEEEEEEECTTC---CHHHHHHHHHHHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHHTT--CEEEEEETHH
T ss_pred cccCCC-CCceeeeccCcc---cHHHHHHHHHHHHHHHHHHHHhcCCchhCCHHHHHHHHHHHHhhcC--cEEEEEeHHH
Confidence 554443 455677764211 2456899999999999999999999999999999999999999885 9999999999
Q ss_pred HHHcCCCchhhhcccCCCCCeEEEEEEcCCCCCCCceEEEEecceeecCCCCCCCCCCcccccccccccchHHHHHHHHH
Q 007947 310 CKELKMGSYLGVAAASANLPHFIHLCYKPPGGSAKIKLALVGKGLTFDSGGYNIKTGPGCLIENMKYDMGGAAAVLGAAK 389 (583)
Q Consensus 310 l~~~gmg~llaV~~GS~~pPrli~l~Y~g~~~~~~~~i~LVGKGiTFDsGG~slKp~~~~~M~~MK~DM~GAAaVlga~~ 389 (583)
|+++|||+||+|||||.+|||||+|+|+|+ + .+++|+|||||||||||||||||+. +|++||+||+|||+|+|+|+
T Consensus 212 l~~~gmg~~laVg~gS~~pPrli~l~y~~~-~-~~~~i~LVGKGiTFDsGG~slKp~~--~M~~Mk~DM~GAAaVlg~~~ 287 (491)
T 2hc9_A 212 LLKAGFGGIYHVGKAGPTPPAFVVLSHEVP-G-STEHIALVGKGVVYDTGGLQIKTKT--GMPNMKRDMGGAAGMLEAYS 287 (491)
T ss_dssp HHHHTCHHHHHHHTTSSSCCEEEEEEECCT-T-CSCEEEEEEEEEEEECCTTSCCCTT--TSTTGGGGGHHHHHHHHHHH
T ss_pred HHhCCCCcEEEecccCCCCCEEEEEEeCCC-C-CCCcEEEEcCceEecCCCccCCCCc--ChhhccccccHHHHHHHHHH
Confidence 999999999999999999999999999994 3 3579999999999999999999998 89999999999999999999
Q ss_pred HHHhcCCCceEEEEEEeecccCCCCCCCCCCcEEEccCCcEEEeecCCccCceehhhhhhHHHh-cCCCeEEEecchhHH
Q 007947 390 AIGQIKPPGVEVHFIVAACENMISGTGMRPGDIITAANGKTIEVNNTDAEGRLTLADALIYACN-QGVDKVIDLATLTGA 468 (583)
Q Consensus 390 aia~lklp~vnV~~ii~~~ENm~sg~A~rPGDVvts~~GkTVEV~NTDAEGRLvLADaL~Ya~~-~~p~~iIDiATLTGA 468 (583)
++++|++| +||+++||+|||||||+|||||||||+||||||||.||||||||||||+|+||++ ++|+.|||+||||||
T Consensus 288 a~a~l~l~-vnv~~~l~~~ENm~sg~A~rPgDVits~~GkTVEV~NTDAEGRLvLADaL~yA~~~~~p~~iiD~ATLTGA 366 (491)
T 2hc9_A 288 ALVKHGFS-QTLHACLCIVENNVSPIANKPDDIIKMLSGKTVEINNTDAEGRLILADGVFYAKETLKATTIFDMATLTGA 366 (491)
T ss_dssp HHHTTTCC-SEEEEEEEEEEECCSTTSCCTTCEEECTTSCEEECSCTTCCHHHHHHHHHHHHHHTTCCSEEEEEECCCTT
T ss_pred HHHHcCCC-ceEEEEEEeeecCCCCCCCCCCCEEEeCCCcEEEEecCCccceeeehhHHHHHhhhcCCCEEEEecchHHH
Confidence 99999999 9999999999999999999999999999999999999999999999999999986 799999999999999
Q ss_pred HHHhhCCCeEEEeeCCHHHHHHHHHHHHHhCCceeeCCCChh-HHhhccCcccccccC--CCC-CCchhHHHHHHhhccC
Q 007947 469 CVVALGPSVAGAFTPSDDLANEVMAASQVSGEKIWRMPLEES-YWEMMKSGVADMVNT--GGR-QGGAITAALFLKQYVD 544 (583)
Q Consensus 469 ~~vALG~~~agvfsn~~~l~~~l~~ag~~~gE~~WrlPl~~~-y~~~lkS~vADl~N~--g~~-~~gaitAA~FL~~Fv~ 544 (583)
|++|||++++|+|+|||+|+++|.+||+.+||++||||||++ |++++||++|||+|+ ++| .+|+||||+||++|++
T Consensus 367 ~~vALG~~~ag~~sn~d~l~~~l~~Ag~~~ge~~WrlPl~~~~~~~~l~S~~ADl~N~~~~~~~~~gs~tAa~FL~~fv~ 446 (491)
T 2hc9_A 367 QAWLSGRLHGAAMTNDEQLENEIIKAGKASGDLVAPMLFAPDLFFGDLKSSIADMKNSNLGKMDGPPSAVAGLLIGAHIG 446 (491)
T ss_dssp HHHHHTTTSEEEEESCHHHHHHHHHHHHHHSCCEEECCCCHHHHGGGGCCSSSSEESCCSSCCSSCHHHHHHHHHHTTTG
T ss_pred HHHHhCCCcEEEEECcHHHHHHHHHHHHHhCCcEecCCCChHHHHHhcCCchhhhcCCCCCCCCCCcHHHHHHHHHhhCC
Confidence 999999999999999999999999999999999999999976 689999999999999 446 4799999999999984
Q ss_pred --CCCCeEEeeecccCCCCCCCCcccchHHHHHHHHHhcc
Q 007947 545 --EKVQWMHIDIAGPVWSEKMRSATGFGISTMVEWVLKNS 582 (583)
Q Consensus 545 --~~~~WaHlDIAG~a~~~~~kgaTG~gVrtL~~~l~~~~ 582 (583)
+++||+|||||||+|.. +|+||||||||++|+++++
T Consensus 447 ~~~~~~W~HlDIAG~a~~~--~gaTG~gvr~L~~~l~~~~ 484 (491)
T 2hc9_A 447 FGEGLRWLHLDIAAPAEVG--DRGTGYGPALFSTLLGKYT 484 (491)
T ss_dssp GGTTSEEEEEECTTTTEET--TEECCCSHHHHHHHHGGGS
T ss_pred CCCCCCeEEEecCcccCCC--CCceehhHHHHHHHHHHhc
Confidence 46899999999999954 6899999999999998764
No 10
>4efd_A Aminopeptidase; structural genomics, structural genomics consortium, SGC, hydrolase; 2.45A {Trypanosoma brucei brucei}
Probab=100.00 E-value=5.8e-121 Score=983.15 Aligned_cols=318 Identities=34% Similarity=0.490 Sum_probs=302.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHhhhcCCceEEEEeCHHHHHHcCCCchhhhcccCCCCCeEEEEE
Q 007947 256 LKYAEHVSSAVIFGRELVNSPANVLTPAVLAEEASKVASMYSDVLSATILDIEKCKELKMGSYLGVAAASANLPHFIHLC 335 (583)
Q Consensus 256 ~~~~~~~a~~~~~aRdL~n~P~N~ltP~~~A~~a~~~~~~~~~~~~v~V~d~~~l~~~gmg~llaV~~GS~~pPrli~l~ 335 (583)
.++.+++++++++||||+|+|+|+|||++||+++++++++++ ++|+|+|++||+++|||+||+|||||.+|||||+|+
T Consensus 197 ~~~~~~ia~~~~laRdLvn~P~N~~tP~~lA~~a~~l~~~~g--v~v~Vl~~~~l~~~gmg~~laVg~GS~~pPrli~L~ 274 (522)
T 4efd_A 197 PKDLEAVATSTQLCQRLVDAPPNLLTTATFTEIAQGYAKALG--FDVDVICGDDLCERGYGGIYSVGKAAFEAPRLVTLL 274 (522)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHHHT--CEEEEEETHHHHHHTCHHHHHHHTTSSSCCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhcCCchhCCHHHHHHHHHHHHHHcC--CEEEEEeHHHHHHcCCCcEEeeccCCCCCCEEEEEE
Confidence 356789999999999999999999999999999999999985 999999999999999999999999999999999999
Q ss_pred EcCCCCCCCceEEEEecceeecCCCCCCCCCCcccccccccccchHHHHHHHHHHHHhcCCCceEEEEEEeecccCCCCC
Q 007947 336 YKPPGGSAKIKLALVGKGLTFDSGGYNIKTGPGCLIENMKYDMGGAAAVLGAAKAIGQIKPPGVEVHFIVAACENMISGT 415 (583)
Q Consensus 336 Y~g~~~~~~~~i~LVGKGiTFDsGG~slKp~~~~~M~~MK~DM~GAAaVlga~~aia~lklp~vnV~~ii~~~ENm~sg~ 415 (583)
|+|+ ++.+++|+|||||||||||||||||+. +|++||+||+|||+|+|+|+++++||+| +||+++||+|||||||+
T Consensus 275 Y~g~-~~~~~~iaLVGKGITFDSGGlsLKp~~--~M~~MK~DMgGAAaVlga~~a~a~l~lp-vnV~~vl~~~ENm~sg~ 350 (522)
T 4efd_A 275 YTPK-GTPVKKVSLVGKGIVYDCGGLALKPAD--YMKLMKHDMGGAAAVFCGFLTAVRLQQP-VQLSCTLCLAENAIGPK 350 (522)
T ss_dssp ECCS-SCCSEEEEEEEEEEETCCCCSSSCHHH--HHHHGGGTTHHHHHHHHHHHHHHHHTCS-EEEEEEEEEEECCC-CC
T ss_pred ECCC-CCCCCcEEEecCceEeecCCccCCCcc--chhhcccccchHHHHHHHHHHHHHcCCC-ceEEEEEEEeccCCCCC
Confidence 9994 456789999999999999999999988 8999999999999999999999999999 99999999999999999
Q ss_pred CCCCCcEEEccCCcEEEeecCCccCceehhhhhhHHHh---cCCCeEEEecchhHHHHHhhCCCeEEEeeCCHHHHHHHH
Q 007947 416 GMRPGDIITAANGKTIEVNNTDAEGRLTLADALIYACN---QGVDKVIDLATLTGACVVALGPSVAGAFTPSDDLANEVM 492 (583)
Q Consensus 416 A~rPGDVvts~~GkTVEV~NTDAEGRLvLADaL~Ya~~---~~p~~iIDiATLTGA~~vALG~~~agvfsn~~~l~~~l~ 492 (583)
|||||||||+||||||||.||||||||||||+|+||++ ++|+.|||+|||||||++|||++++|+|+|||+|+++|+
T Consensus 351 A~rPgDVits~~GkTVEV~NTDAEGRLVLADaL~yA~~~~~~~P~~iIDiATLTGA~~vALG~~~agvfsndd~l~~~l~ 430 (522)
T 4efd_A 351 SYRNDDIIVMKSGKTVEVINTDAEGRIVLGDGVFHATNELSFTPDVVIDMATLTGAQGIATGRHHAGLYVNEEGAEAAML 430 (522)
T ss_dssp STTTTEEEECTTSCEEEESCTTCCHHHHHHHHHHHHHHTSSSCCSEEEEEECCCTHHHHHHCSSCEEEEESCHHHHHHHH
T ss_pred CCCCCCEEEecCCcEEEeccCCchhhhhHHHHHHHhhhccccCCCEEEeeccchhhHHhhcCCCceEEeeCCHHHHHHHH
Confidence 99999999999999999999999999999999999975 599999999999999999999999999999999999999
Q ss_pred HHHHHhCCceeeCCCChhHH-hhccCcccccccCCC-C-CCchhHHHHHHhhccCCC--CCeEEeeecccCCCCCCCCcc
Q 007947 493 AASQVSGEKIWRMPLEESYW-EMMKSGVADMVNTGG-R-QGGAITAALFLKQYVDEK--VQWMHIDIAGPVWSEKMRSAT 567 (583)
Q Consensus 493 ~ag~~~gE~~WrlPl~~~y~-~~lkS~vADl~N~g~-~-~~gaitAA~FL~~Fv~~~--~~WaHlDIAG~a~~~~~kgaT 567 (583)
+||+.+||++||||||++|+ +++||++|||+|+|+ | .||+||||+||++|++++ .||+|||||||+|. ++|+|
T Consensus 431 ~Ag~~~gE~~WrlPl~~~y~~~~l~S~vADl~N~g~~~~~aGsitAA~FL~~Fv~~~~~~~WaHlDIAG~a~~--~~GaT 508 (522)
T 4efd_A 431 RAGRESGETCFPVLYCPEYHEPEFKSNHADMTNLMERRDNAGVSCAGYFITTHLSPKFTGAHIHVDLAYPVFN--SNGAT 508 (522)
T ss_dssp HHHHHHSCCEEECCCCHHHHGGGGCCSSSSEESSCSSSSSCHHHHHHHHHHTTSCTTCCSEEEEEECTTTTEE--TTEEC
T ss_pred HHHHhhCCCCcccCCCHHHHHhhcCCCeeeeeCCCCCCCCccHHHHHHHHHHhcCCCCCCCeEEEECCCCCcC--CCCce
Confidence 99999999999999999986 589999999999975 3 689999999999999753 69999999999996 48999
Q ss_pred cchHHHHHHHHHhc
Q 007947 568 GFGISTMVEWVLKN 581 (583)
Q Consensus 568 G~gVrtL~~~l~~~ 581 (583)
|||||||++||+++
T Consensus 509 G~gVr~L~~~l~~~ 522 (522)
T 4efd_A 509 GFGPALLTEYFRKL 522 (522)
T ss_dssp CCSHHHHHHHHHTC
T ss_pred eHHHHHHHHHHHhC
Confidence 99999999999874
No 11
>3gb0_A Peptidase T; NP_980509.1, aminopeptidase PEPT, peptidase family M20/M25/M structural genomics, joint center for structural genomics; 2.04A {Bacillus cereus atcc 10987}
Probab=83.24 E-value=10 Score=38.68 Aligned_cols=129 Identities=16% Similarity=0.147 Sum_probs=75.0
Q ss_pred HHHHHHHhhcCCCCCCChHHHHHHHHHHhhhcCCceEEEEeCHHHHHHcCCCchhhhcccC--CCCCeEEEEEEcC--CC
Q 007947 265 AVIFGRELVNSPANVLTPAVLAEEASKVASMYSDVLSATILDIEKCKELKMGSYLGVAAAS--ANLPHFIHLCYKP--PG 340 (583)
Q Consensus 265 ~~~~aRdL~n~P~N~ltP~~~A~~a~~~~~~~~~~~~v~V~d~~~l~~~gmg~llaV~~GS--~~pPrli~l~Y~g--~~ 340 (583)
-+.+-|+|++.|.---.-...++...+..++++ +++++.+.......+.+.+++.=+|+ ..|+.++.-+|.- .+
T Consensus 8 ~~~~l~~l~~~ps~s~~e~~~~~~l~~~l~~~G--~~v~~~~~~~~~~~~~~nv~a~~~g~~~~~~~v~l~aH~D~vp~~ 85 (373)
T 3gb0_A 8 LVNEFMELVQVDSETKFEAEICKVLTKKFTDLG--VEVFEDDTMAVTGHGAGNLICTLPATKDGVDTIYFTSHMDTVVPG 85 (373)
T ss_dssp HHHHHHHHHTSCCBTTCCHHHHHHHHHHHHHTT--CEEEECSCHHHHCCSSCCEEEEECCSSTTCCCEEEEEECCBCSSC
T ss_pred HHHHHHHHhcccCCCccHHHHHHHHHHHHHHCC--CEEEEeccccccCCCceeEEEEecCCCCCCCEEEEEEECcccCCC
Confidence 357789999998866666788888888888886 88876543222223456777776665 2334444444431 11
Q ss_pred CCCCceEEEEecceeecCCCCCCCCCCccccccccccc-chHHHHHHHHHHHHhcCCCceEEEEEEeecc
Q 007947 341 GSAKIKLALVGKGLTFDSGGYNIKTGPGCLIENMKYDM-GGAAAVLGAAKAIGQIKPPGVEVHFIVAACE 409 (583)
Q Consensus 341 ~~~~~~i~LVGKGiTFDsGG~slKp~~~~~M~~MK~DM-~GAAaVlga~~aia~lklp~vnV~~ii~~~E 409 (583)
+.- +++ +=.|..|= .+. + .|-.|| +|.|+.+++++++.+.+.++-+|..+.-..|
T Consensus 86 ~~~-~p~--~~~g~~~g-------~G~---~-~~g~D~k~g~a~~l~a~~~l~~~~~~~~~v~~~~~~~E 141 (373)
T 3gb0_A 86 NGI-KPS--IKDGYIVS-------DGT---T-ILGADDKAGLASMFEAIRVLKEKNIPHGTIEFIITVGE 141 (373)
T ss_dssp SSC-CCE--EETTEEEC-------CSS---S-CCCHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEESCG
T ss_pred CCc-CcE--EECCEEEC-------CCc---c-ccCcccHHHHHHHHHHHHHHHhcCCCCCCEEEEEEecc
Confidence 110 111 11122221 111 1 133466 7889999999999887654357776655554
No 12
>4h2k_A Succinyl-diaminopimelate desuccinylase; DAPE, MCSG, PSI-biology, structural genomics, midwest center structural genomics, hydrolase; 1.84A {Haemophilus influenzae}
Probab=81.91 E-value=4 Score=40.16 Aligned_cols=42 Identities=7% Similarity=0.093 Sum_probs=33.0
Q ss_pred HHHHHHHHHhhcCCCCCCChHHHHHHHHHHhhhcCCceEEEEeC
Q 007947 263 SSAVIFGRELVNSPANVLTPAVLAEEASKVASMYSDVLSATILD 306 (583)
Q Consensus 263 a~~~~~aRdL~n~P~N~ltP~~~A~~a~~~~~~~~~~~~v~V~d 306 (583)
.+-+.+.|+|++.|+---.....++...+..++.+ ++++..+
T Consensus 6 ~~~~~~l~~lv~ips~s~~e~~~~~~l~~~l~~~G--~~~~~~~ 47 (269)
T 4h2k_A 6 EKVVSLAQDLIRRPSISPNDEGCQQIIAERLEKLG--FQIEWMP 47 (269)
T ss_dssp HHHHHHHHHHHTSCCBTTCCTTHHHHHHHHHHTTT--CEEEECC
T ss_pred HHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHcC--CeEEEEE
Confidence 35678899999999866666677888888888775 8888764
No 13
>1q7l_A Aminoacylase-1; catalysis, enzyme dimerization, site- directed mutagenesis, structure comparison, zinc, hydrolase; 1.40A {Homo sapiens} SCOP: c.56.5.4
Probab=79.49 E-value=24 Score=32.79 Aligned_cols=124 Identities=14% Similarity=0.052 Sum_probs=64.5
Q ss_pred HHHHHHhhcCCCCCCC--hHHHHHHHHHHhhhcCCceEEEEeCHHHHHHcCCCchhhhcccCCC-CCeEEEEEEcCCCCC
Q 007947 266 VIFGRELVNSPANVLT--PAVLAEEASKVASMYSDVLSATILDIEKCKELKMGSYLGVAAASAN-LPHFIHLCYKPPGGS 342 (583)
Q Consensus 266 ~~~aRdL~n~P~N~lt--P~~~A~~a~~~~~~~~~~~~v~V~d~~~l~~~gmg~llaV~~GS~~-pPrli~l~Y~g~~~~ 342 (583)
+.+-|+|++.|+-.-+ -...++..++.+++++ +++++.+.. .|-..+++.-+|+.. .|.++...+--.=+.
T Consensus 13 ~~~l~~lv~i~s~s~~~~e~~~~~~l~~~l~~~g--~~~~~~~~~----~g~~~~i~~~~g~~~~~~~ill~aH~DtVp~ 86 (198)
T 1q7l_A 13 VTLFRQYLRIRTVQPKPDYGAAVAFFEETARQLG--LGCQKVEVA----PGYVVTVLTWPGTNPTLSSILLNSHTDVVPV 86 (198)
T ss_dssp HHHHHHHHTSCCBTTSCCHHHHHHHHHHHHHHHT--CEEEEEEEE----TTEEEEEEEECCSSTTSCEEEEEEECCBCCC
T ss_pred HHHHHHHhcCCCCCCCcCHHHHHHHHHHHHHHCC--CeEEEEEcC----CCCeEEEEEEccCCCCCCeEEEEeeecccCC
Confidence 5678889998875442 3567788888888886 787765421 122234443334321 133332222110000
Q ss_pred CCceEEEEecceeec-------CCCCCCCCCCcccccccccccchHHHHHHHHHHHHhcC--CCceEEEEEEeeccc
Q 007947 343 AKIKLALVGKGLTFD-------SGGYNIKTGPGCLIENMKYDMGGAAAVLGAAKAIGQIK--PPGVEVHFIVAACEN 410 (583)
Q Consensus 343 ~~~~i~LVGKGiTFD-------sGG~slKp~~~~~M~~MK~DM~GAAaVlga~~aia~lk--lp~vnV~~ii~~~EN 410 (583)
. +.+.++| .+|. |. +. +-.+|| +|.|+.+.+++++.+.+ ++ .+|..++-..|=
T Consensus 87 ~-------~~~w~~~pf~~~~~~~g~-l~-Gr--Ga~D~K---~g~a~~l~a~~~l~~~~~~~~-~~v~~~~~~~EE 148 (198)
T 1q7l_A 87 F-------KEHWSHDPFEAFKDSEGY-IY-AR--GAQDMK---CVSIQYLEAVRRLKVEGHRFP-RTIHMTFVPDEE 148 (198)
T ss_dssp C-------GGGCSSCTTTCCBCTTSE-EE-CT--TTTTTH---HHHHHHHHHHHHHHHTTCCCS-SCEEEEEESCGG
T ss_pred C-------cccCccCCCeeeEccCCE-EE-eC--cchhch---HHHHHHHHHHHHHHHcCCCCC-CCEEEEEEcccc
Confidence 0 0011111 1110 00 00 112233 78899999999998875 44 677777766664
No 14
>3ct9_A Acetylornithine deacetylase; NP_812461.1, A putative zinc peptidase, peptidase family M20 structural genomics; 2.31A {Bacteroides thetaiotaomicron vpi-5482}
Probab=76.07 E-value=25 Score=35.68 Aligned_cols=123 Identities=10% Similarity=0.088 Sum_probs=70.6
Q ss_pred HHHHHHHHhhcCCCCCCChHHHHHHHHHHhhhcCCceEEEEeCHHHHHHcCCCchhhhcccC-CCCCeEEE-EEEcCCCC
Q 007947 264 SAVIFGRELVNSPANVLTPAVLAEEASKVASMYSDVLSATILDIEKCKELKMGSYLGVAAAS-ANLPHFIH-LCYKPPGG 341 (583)
Q Consensus 264 ~~~~~aRdL~n~P~N~ltP~~~A~~a~~~~~~~~~~~~v~V~d~~~l~~~gmg~llaV~~GS-~~pPrli~-l~Y~g~~~ 341 (583)
+-+.+-|+|++.|.---.-...++...+..++++ +++++. .+.+++.=+|+ ...|.++. -+|.-- +
T Consensus 12 ~~~~~~~~l~~~ps~s~~e~~~~~~l~~~l~~~g--~~~~~~---------~~nv~a~~~g~~~~~~~i~l~aH~D~v-p 79 (356)
T 3ct9_A 12 EAVSLLKSLISIPSISREETQAADFLQNYIEAEG--MQTGRK---------GNNVWCLSPMFDLKKPTILLNSHIDTV-K 79 (356)
T ss_dssp HHHHHHHHHHTSCCBTTCCHHHHHHHHHHHHHTT--CCEEEE---------TTEEEEECSSCCTTSCEEEEEEECCBC-C
T ss_pred HHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHCC--CeEEEE---------eeeEEEEEecCCCCCCeEEEEcccccc-C
Confidence 4578899999999866666778888888888875 777764 46677665552 22344333 333210 0
Q ss_pred CCCceEEEEecceeecCCCCCCCCCCcccccccc-ccc-chHHHHHHHHHHHHhcCCCceEEEEEEeeccc
Q 007947 342 SAKIKLALVGKGLTFDSGGYNIKTGPGCLIENMK-YDM-GGAAAVLGAAKAIGQIKPPGVEVHFIVAACEN 410 (583)
Q Consensus 342 ~~~~~i~LVGKGiTFDsGG~slKp~~~~~M~~MK-~DM-~GAAaVlga~~aia~lklp~vnV~~ii~~~EN 410 (583)
. |-+-+.|- +..+-..+ .|..=- .|| +|.|+.+++++++.+.+++ .+|..+.-..|=
T Consensus 80 ~--------~~~w~~~p--~~~~~~~g-~~~g~G~~D~k~g~a~~l~a~~~l~~~~~~-~~v~~~~~~~EE 138 (356)
T 3ct9_A 80 P--------VNGWRKDP--FTPREENG-KLYGLGSNDAGASVVSLLQVFLQLCRTSQN-YNLIYLASCEEE 138 (356)
T ss_dssp C--------C---------CCCEECSS-EEESTTTTTTHHHHHHHHHHHHHHTTSCCS-SEEEEEEECCGG
T ss_pred C--------CCCCCCCC--CccEEECC-EEEecCcccchHHHHHHHHHHHHHHhcCCC-CCEEEEEEeCcc
Confidence 0 00011110 10000010 121110 255 5889999999999988865 788888766664
No 15
>3rza_A Tripeptidase; phosphorylase/hydrolase-like, structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; HET: CIT PG4 PGE; 2.10A {Staphylococcus aureus subsp}
Probab=75.81 E-value=14 Score=38.16 Aligned_cols=129 Identities=14% Similarity=0.146 Sum_probs=72.9
Q ss_pred HHHHHHhhcCCCCCCChHHHHHHHHHHhhhcCCceEEEEeCHHHHHHcCCCchhhhcccC---C-CCCeEEEEEEc--CC
Q 007947 266 VIFGRELVNSPANVLTPAVLAEEASKVASMYSDVLSATILDIEKCKELKMGSYLGVAAAS---A-NLPHFIHLCYK--PP 339 (583)
Q Consensus 266 ~~~aRdL~n~P~N~ltP~~~A~~a~~~~~~~~~~~~v~V~d~~~l~~~gmg~llaV~~GS---~-~pPrli~l~Y~--g~ 339 (583)
+.+-|+|++.|.---.-...++...+..++++ +++++.+...-...+.+.+++.=+|+ . .|+.++.-+|. |.
T Consensus 27 ~~~l~~L~~ips~s~~E~~~~~~l~~~l~~~G--~~v~~~~~~~~~~~~~~nvia~~~g~~~~~~~~~i~l~aH~D~vp~ 104 (396)
T 3rza_A 27 LNTFLELVQIDSETGNESTIQPILKEKFIALG--LDVKEDEAAKHPKLGANNLVCTMNSTIEEGEVPKLYLTSHMDTVVP 104 (396)
T ss_dssp HHHHHHHHTSCCBTTCTTTHHHHHHHHHHHTT--CEEEECSGGGSTTCSSCCEEEEECCCCC---CCCEEEEEECCBCSS
T ss_pred HHHHHHHeecCCCCcCHHHHHHHHHHHHHHCC--CEEEEeccccccCCCCceEEEEECCcCCCCCCCeEEEEEECCccCC
Confidence 57788999998755555677788888888885 88877543211123456777776665 2 33344444443 11
Q ss_pred CCCCCceEEEEecceeecCCCCCCCCCCccccccccccc-chHHHHHHHHHHHHhcCCCceEEEEEEeecc
Q 007947 340 GGSAKIKLALVGKGLTFDSGGYNIKTGPGCLIENMKYDM-GGAAAVLGAAKAIGQIKPPGVEVHFIVAACE 409 (583)
Q Consensus 340 ~~~~~~~i~LVGKGiTFDsGG~slKp~~~~~M~~MK~DM-~GAAaVlga~~aia~lklp~vnV~~ii~~~E 409 (583)
+.. -+|+ ..+-|..|= .+. + .|-.|| +|.|+.+++++++.+.+.+.-+|..+.-..|
T Consensus 105 g~~-~~p~-~~~~g~~~g-------~G~---~-~~g~D~k~g~a~~l~a~~~l~~~~~~~~~v~~~~~~~E 162 (396)
T 3rza_A 105 AIN-VKPI-VKDDGYIYS-------DGT---T-ILGADDKAGLAAMLEVLQVIKEQQIPHGQIQFVITVGE 162 (396)
T ss_dssp CSS-CCCE-ECTTSEEEC-------CSS---S-CCCHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEEESCG
T ss_pred CCC-cceE-EecCCEEEC-------CCc---c-ccCcccHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccc
Confidence 111 1111 010022111 111 1 122477 8999999999999887644357776665554
No 16
>1cg2_A Carboxypeptidase G2; metallocarboxypeptidase, hydrolase; 2.50A {Pseudomonas SP} SCOP: c.56.5.4 d.58.19.1
Probab=74.77 E-value=20 Score=36.75 Aligned_cols=127 Identities=17% Similarity=0.131 Sum_probs=70.1
Q ss_pred HHHHHHHHHhhcCCCCCCCh---HHHHHHHHHHhhhcCCceEEEEeCHHHHHHcCCC-chhhhcccCCCCCeEEEEEEcC
Q 007947 263 SSAVIFGRELVNSPANVLTP---AVLAEEASKVASMYSDVLSATILDIEKCKELKMG-SYLGVAAASANLPHFIHLCYKP 338 (583)
Q Consensus 263 a~~~~~aRdL~n~P~N~ltP---~~~A~~a~~~~~~~~~~~~v~V~d~~~l~~~gmg-~llaV~~GS~~pPrli~l~Y~g 338 (583)
-+-+.+-++|++.|+-.-.+ ...++..++.+++++ +++++.+... .+++ .+++.=.|+..|+-++.-+|.-
T Consensus 19 ~~~~~~l~~lv~i~s~s~~~~~~~~~~~~l~~~l~~~G--~~~~~~~~~~---~~~~~~v~a~~~g~~~~~i~l~aH~D~ 93 (393)
T 1cg2_A 19 PAVIKTLEKLVNIETGTGDAEGIAAAGNFLEAELKNLG--FTVTRSKSAG---LVVGDNIVGKIKGRGGKNLLLMSHMDT 93 (393)
T ss_dssp HHHHHHHHHHHTSCCBTTCHHHHHHHHHHHHHHHHHTT--CEEEEEECST---TCCSEEEEEEEECSSCCCEEEEEECCB
T ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHcC--CeEEEEecCc---CCCCCeEEEEECCCCCceEEEEEecCc
Confidence 45678899999999855555 467888888888875 8887765311 1233 4555444433333333333331
Q ss_pred --CCCC-CCceEEEEecceeecCCCCCCCCCCccccccccccc-chHHHHHHHHHHHHhcCCC-ceEEEEEEeeccc
Q 007947 339 --PGGS-AKIKLALVGKGLTFDSGGYNIKTGPGCLIENMKYDM-GGAAAVLGAAKAIGQIKPP-GVEVHFIVAACEN 410 (583)
Q Consensus 339 --~~~~-~~~~i~LVGKGiTFDsGG~slKp~~~~~M~~MK~DM-~GAAaVlga~~aia~lklp-~vnV~~ii~~~EN 410 (583)
..+. ...|.... +|.=.-++ - .|| +|.|+.+++++++.+.+.+ ..+|..+.-..|-
T Consensus 94 vp~~~~~~~~Pf~~~--------~g~l~grG----~----~D~k~~~a~~l~a~~~l~~~~~~~~~~v~~~~~~~EE 154 (393)
T 1cg2_A 94 VYLKGILAKAPFRVE--------GDKAYGPG----I----ADDKGGNAVILHTLKLLKEYGVRDYGTITVLFNTDEE 154 (393)
T ss_dssp SCCTTHHHHSCCEEE--------TTEEECTT----T----TTTHHHHHHHHHHHHHHHHTTCCCSSEEEEEEESCGG
T ss_pred CCCCCccccCCeeee--------CCEEEcCC----c----ccchHHHHHHHHHHHHHHhcCCCCCCCEEEEEEcccc
Confidence 1000 00122211 11100011 1 244 5789999999999887633 1477777766665
No 17
>1vhe_A Aminopeptidase/glucanase homolog; structural genomics, unknown function; HET: MSE; 1.90A {Bacillus subtilis} SCOP: b.49.3.1 c.56.5.4
Probab=72.95 E-value=47 Score=34.09 Aligned_cols=59 Identities=12% Similarity=0.184 Sum_probs=40.7
Q ss_pred HHHHHHHhhcCCCCCCChHHHHHHHHHHhhhcCCceEEEEeCHHHHHHcCCCchhhhcccCCCCCeEEE
Q 007947 265 AVIFGRELVNSPANVLTPAVLAEEASKVASMYSDVLSATILDIEKCKELKMGSYLGVAAASANLPHFIH 333 (583)
Q Consensus 265 ~~~~aRdL~n~P~N~ltP~~~A~~a~~~~~~~~~~~~v~V~d~~~l~~~gmg~llaV~~GS~~pPrli~ 333 (583)
-+.+-++|++.|+---....+++..++..++++ +++++ | .+|.+++.-.|+...|+++.
T Consensus 9 ~~~~l~~L~~~~s~sg~e~~~~~~l~~~l~~~g--~~~~~-d-------~~gnlia~~~g~~~~~~vll 67 (373)
T 1vhe_A 9 TLTMLKDLTDAKGIPGNEREVRQVMKSYIEPFA--DEVTT-D-------RLGSLIAKKTGAENGPKIMI 67 (373)
T ss_dssp HHHHHHHHHHSCCCTTCCHHHHHHHHHHHGGGC--SEEEE-C-------TTCCEEEEEESSTTSCEEEE
T ss_pred HHHHHHHHHcCCCCCCchHHHHHHHHHHHHhhC--CEEEE-c-------CCCcEEEEecCCCCCceEEE
Confidence 356788899988765566788898888888886 67765 2 35677776566533454443
No 18
>2pok_A Peptidase, M20/M25/M40 family; M20 family peptidase, metallo protein, MCSG, structural GENO PSI-2, protein structure initiative; HET: BGC; 1.90A {Streptococcus pneumoniae}
Probab=72.75 E-value=29 Score=36.73 Aligned_cols=120 Identities=17% Similarity=0.112 Sum_probs=67.3
Q ss_pred HHHHHHHHhhcCCCCCCCh---HHHHHHHHHHhhhcCCceEEEEeCHHHHHHcCCCchhhhcccCCCCCeEEEEEEcCCC
Q 007947 264 SAVIFGRELVNSPANVLTP---AVLAEEASKVASMYSDVLSATILDIEKCKELKMGSYLGVAAASANLPHFIHLCYKPPG 340 (583)
Q Consensus 264 ~~~~~aRdL~n~P~N~ltP---~~~A~~a~~~~~~~~~~~~v~V~d~~~l~~~gmg~llaV~~GS~~pPrli~l~Y~g~~ 340 (583)
+-+.+-|+|++.|.---.. ...++...+..++.+ +++++.+. .+.+.+++.=+|+.
T Consensus 45 ~~~~~l~~l~~ips~s~~e~~~~~~~~~l~~~l~~~G--~~~~~~~~-----~~~~~v~a~~~g~~-------------- 103 (481)
T 2pok_A 45 HYFEVLRTLISKKSVFAQQVGLKEVANYLGEIFKRVG--AEVEIDES-----YTAPFVMAHFKSSR-------------- 103 (481)
T ss_dssp HHHHHHHHHHHSCCCGGGCTTHHHHHHHHHHHHHHTT--CEEEEECS-----SSSCEEEEEECCSS--------------
T ss_pred HHHHHHHHHHcCCCcCCCCHHHHHHHHHHHHHHHHcC--CEEEEecC-----CCCcEEEEEecCCC--------------
Confidence 4578899999988754333 667888888888875 88887651 23445555433320
Q ss_pred CCCCceEEEEecceeecC---CCC---CCCCCCcccc--cccc----ccc-chHHHHHHHHHHHHhc--CCCceEEEEEE
Q 007947 341 GSAKIKLALVGKGLTFDS---GGY---NIKTGPGCLI--ENMK----YDM-GGAAAVLGAAKAIGQI--KPPGVEVHFIV 405 (583)
Q Consensus 341 ~~~~~~i~LVGKGiTFDs---GG~---slKp~~~~~M--~~MK----~DM-~GAAaVlga~~aia~l--klp~vnV~~ii 405 (583)
+..++|+|.| =+|+ |+. +-.|-.+ .. ..|. .|| +|.|+.+.+++++.+. +++ .+|..+.
T Consensus 104 -~~~~~i~l~a---H~D~vp~~~~~~w~~~pf~~-~~~~g~l~grG~~D~k~g~a~~l~a~~~l~~~~~~~~-~~v~~~~ 177 (481)
T 2pok_A 104 -PDAKTLIFYN---HYDTVPADGDQVWTEDPFTL-SVRNGFMYGRGVDDDKGHITARLSALRKYMQHHDDLP-VNISFIM 177 (481)
T ss_dssp -TTCCEEEEEE---ECCCCCSCSSCCCSSCTTSC-EEETTEEESTTTTTTHHHHHHHHHHHHHHHHTCSSCS-SEEEEEE
T ss_pred -CCCCeEEEEE---eccCcCCCCccccccCCCCc-eeeCCeEEccccccCcHHHHHHHHHHHHHHHhcCCCC-CCEEEEE
Confidence 1122333333 1222 211 0001100 00 0122 454 6789999999999886 455 6888877
Q ss_pred eeccc
Q 007947 406 AACEN 410 (583)
Q Consensus 406 ~~~EN 410 (583)
-..|=
T Consensus 178 ~~~EE 182 (481)
T 2pok_A 178 EGAEE 182 (481)
T ss_dssp ESCGG
T ss_pred ecccc
Confidence 55553
No 19
>3pfo_A Putative acetylornithine deacetylase; metal binding, merops M20A family, amino-acid biosynthesis, metallopeptidase; 1.90A {Rhodopseudomonas palustris}
Probab=68.16 E-value=33 Score=35.52 Aligned_cols=42 Identities=12% Similarity=-0.014 Sum_probs=33.7
Q ss_pred HHHHHHHHHhhcCCCCCCChHHHHHHHHHHhhhcCCceEEEEeC
Q 007947 263 SSAVIFGRELVNSPANVLTPAVLAEEASKVASMYSDVLSATILD 306 (583)
Q Consensus 263 a~~~~~aRdL~n~P~N~ltP~~~A~~a~~~~~~~~~~~~v~V~d 306 (583)
-+-+.+-|+|++.|.---.-...++...+..++++ +++++..
T Consensus 26 ~~~~~~l~~l~~~ps~s~~e~~~~~~l~~~l~~~G--~~~~~~~ 67 (433)
T 3pfo_A 26 NDQVAFLQRMVQFRSVRGEEAPQQEWLAQQFADRG--YKVDTFS 67 (433)
T ss_dssp HHHHHHHHHHHTSCCBTTCCHHHHHHHHHHHHHTT--CEEEEEE
T ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHCC--CceEEEe
Confidence 45678999999999776677788888888888885 8887753
No 20
>1fno_A Peptidase T; metallo peptidase, protease, hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.56.5.4 d.58.19.1 PDB: 1vix_A
Probab=67.83 E-value=45 Score=34.44 Aligned_cols=135 Identities=13% Similarity=0.021 Sum_probs=69.3
Q ss_pred HHHHHHhhcCCCCCC----------ChHHHHHHHHHHhhhcCCceE-EEEeCHHHHHHcCCCchhhhcccCC---CCCeE
Q 007947 266 VIFGRELVNSPANVL----------TPAVLAEEASKVASMYSDVLS-ATILDIEKCKELKMGSYLGVAAASA---NLPHF 331 (583)
Q Consensus 266 ~~~aRdL~n~P~N~l----------tP~~~A~~a~~~~~~~~~~~~-v~V~d~~~l~~~gmg~llaV~~GS~---~pPrl 331 (583)
+.+-++|++.|+-.- .-...++..++..++++ ++ +++-+ .+.+++.=+|+. .|+.+
T Consensus 5 ~~~l~~Lv~i~s~s~~~~~~~p~~~~e~~~~~~l~~~l~~~G--~~~~~~~~--------~~nvia~~~g~~~~~~~~i~ 74 (417)
T 1fno_A 5 LERFLHYVSLDTQSKSGVRQVPSTEGQWKLLRLLKQQLEEMG--LVNITLSE--------KGTLMATLPANVEGDIPAIG 74 (417)
T ss_dssp HHHHHHHHTSCCBCCSSCSSSSSSHHHHHHHHHHHHHHHHHT--CEEEEECT--------TCCEEEEECCSSCSCCCCEE
T ss_pred HHHHHHhEEecCCCCcccCCCCCCccHHHHHHHHHHHHHHcC--CCeEEECC--------CceEEEEECCCCCCCCCceE
Confidence 456788998876332 12456777778788775 77 66532 467777755553 34444
Q ss_pred EEEEEc--CCCCCC-CceEEE---EecceeecCCCCCCCCCC---------ccccccc-----cccc-chHHHHHHHHHH
Q 007947 332 IHLCYK--PPGGSA-KIKLAL---VGKGLTFDSGGYNIKTGP---------GCLIENM-----KYDM-GGAAAVLGAAKA 390 (583)
Q Consensus 332 i~l~Y~--g~~~~~-~~~i~L---VGKGiTFDsGG~slKp~~---------~~~M~~M-----K~DM-~GAAaVlga~~a 390 (583)
+.-+|. |..+.. .+|... =|+.|.+=-|.+-|+|.. +.-|..= =.|| +|.|+.+.++++
T Consensus 75 l~aH~D~Vp~~~~~~~~p~~~~~~~g~~i~~~~g~~~~~~~~~~~~~~~~gd~~l~grGat~l~~D~K~g~a~~l~a~~~ 154 (417)
T 1fno_A 75 FISHVDTSPDFSGKNVNPQIVENYRGGDIALGIGDEVLSPVMFPVLHQLLGQTLITTDGKTLLGADDKAGVAEIMTALAV 154 (417)
T ss_dssp EEEECCBCTTSCCSSCCCEEETTCCSSCEECSSSSCEECTTTCGGGGGCTTSCEEECCSSSCCCHHHHHHHHHHHHHHHH
T ss_pred EEEeccccCCCCCCCCCceEEecCCCCeecccccccccchhhcchhhhhcCCcEEEcCCccccccccHHhHHHHHHHHHH
Confidence 444443 111111 123222 122121111111111111 0011110 1677 889999999999
Q ss_pred HHhcCCCceEEEEEEeeccc
Q 007947 391 IGQIKPPGVEVHFIVAACEN 410 (583)
Q Consensus 391 ia~lklp~vnV~~ii~~~EN 410 (583)
+.+.+.+..+|..+.-..|=
T Consensus 155 l~~~~~~~~~v~~~~~~~EE 174 (417)
T 1fno_A 155 LKGNPIPHGDIKVAFTPDEE 174 (417)
T ss_dssp HHSSSCCCCCEEEEEESCGG
T ss_pred HHhCCCCCCcEEEEEEeccc
Confidence 99876322677777666654
No 21
>3khx_A Putative dipeptidase sacol1801; DAPE, metallopeptidase, hydrolase, metal-bindin metalloprotease, protease; 2.30A {Staphylococcus aureus} PDB: 3ki9_A 3khz_A
Probab=67.45 E-value=20 Score=38.47 Aligned_cols=122 Identities=13% Similarity=0.035 Sum_probs=67.9
Q ss_pred HHHHHHHHHhhcCCCCCCCh------------HHHHHHHHHHhhhcCCceEEEEeCHHHHHHcCCCchhhhcc-cCCCCC
Q 007947 263 SSAVIFGRELVNSPANVLTP------------AVLAEEASKVASMYSDVLSATILDIEKCKELKMGSYLGVAA-ASANLP 329 (583)
Q Consensus 263 a~~~~~aRdL~n~P~N~ltP------------~~~A~~a~~~~~~~~~~~~v~V~d~~~l~~~gmg~llaV~~-GS~~pP 329 (583)
.+-+.+.|+|++.|+---.. ...++...+.+++++ ++++..+ .+.++.+ |+. .|
T Consensus 34 ~~~~~~l~~lv~ips~s~~e~~~~~~p~g~~~~~~~~~l~~~l~~~G--~~~~~~~----------~~~~~~~~g~~-~~ 100 (492)
T 3khx_A 34 DQIINDLKGLLAIESVRDDAKASEDAPVGPGPRKALDYMYEIAHRDG--FTTHDVD----------HIAGRIEAGKG-ND 100 (492)
T ss_dssp HHHHHHHHHHHTSCCCCCSSSCCSSSTTCHHHHHHHHHHHHHHHHTT--CEEEEET----------TTEEEEEEECS-SC
T ss_pred HHHHHHHHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHcC--CcceEeC----------CEEEEEEeCCC-CC
Confidence 34578899999999865543 378888888888885 8887763 2333333 333 34
Q ss_pred eEEEE-EEcCCCCCCCceEEEEecceeecCCCCCCCCCCccccccc-cccc-chHHHHHHHHHHHHhcC--CCceEEEEE
Q 007947 330 HFIHL-CYKPPGGSAKIKLALVGKGLTFDSGGYNIKTGPGCLIENM-KYDM-GGAAAVLGAAKAIGQIK--PPGVEVHFI 404 (583)
Q Consensus 330 rli~l-~Y~g~~~~~~~~i~LVGKGiTFDsGG~slKp~~~~~M~~M-K~DM-~GAAaVlga~~aia~lk--lp~vnV~~i 404 (583)
.++.+ +|.-- + +|-+-++|-=...++.+ .|..= -.|| +|.|+++.+++++.+.+ ++ .+|..+
T Consensus 101 ~i~l~~H~D~v-p--------~~~~w~~~Pf~~~~~~g---~l~GrG~~D~Kg~~a~~l~a~~~l~~~~~~~~-~~i~~~ 167 (492)
T 3khx_A 101 VLGILCHVDVV-P--------AGDGWDSNPFEPVVTED---AIIARGTLDDKGPTIAAYYAIKILEDMNVDWK-KRIHMI 167 (492)
T ss_dssp EEEEEEECCCC-C--------CCSCCSSCTTSCEECSS---EEESTTTTTTHHHHHHHHHHHHHHHHTTCCCS-SEEEEE
T ss_pred EEEEEEeccCC-C--------CCCCcccCCCceEEECC---EEEecCCccCcHHHHHHHHHHHHHHHcCCCCC-CCEEEE
Confidence 43333 33210 0 01111111000001110 01100 1355 78899999999999875 44 788888
Q ss_pred Eeeccc
Q 007947 405 VAACEN 410 (583)
Q Consensus 405 i~~~EN 410 (583)
+-..|=
T Consensus 168 ~~~~EE 173 (492)
T 3khx_A 168 IGTDEE 173 (492)
T ss_dssp EECCTT
T ss_pred EECCcc
Confidence 877764
No 22
>1xmb_A IAA-amino acid hydrolase homolog 2; structural genomics, protein structure initiative, CESG AT5G56660, ILL2, indole-3-acetic acid, auxin; 2.00A {Arabidopsis thaliana} SCOP: c.56.5.4 d.58.19.1 PDB: 2q43_A
Probab=67.20 E-value=31 Score=35.81 Aligned_cols=121 Identities=14% Similarity=0.080 Sum_probs=71.3
Q ss_pred HHHHHHHHHhhcCCCCCCChHHHHHHHHHHhhhcCCceEEEEeCHHHHHHcCCCchhhhcccCCCCCeEEEE-EEcCC-C
Q 007947 263 SSAVIFGRELVNSPANVLTPAVLAEEASKVASMYSDVLSATILDIEKCKELKMGSYLGVAAASANLPHFIHL-CYKPP-G 340 (583)
Q Consensus 263 a~~~~~aRdL~n~P~N~ltP~~~A~~a~~~~~~~~~~~~v~V~d~~~l~~~gmg~llaV~~GS~~pPrli~l-~Y~g~-~ 340 (583)
-+-+.+.|+|+..|.---.-...++...+.+++++ ++|++.+ +.+.+++.=+|+.. |.++.. +|.-- .
T Consensus 28 ~~~i~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G--~~v~~~~-------~~~~l~a~~~~~~~-~~i~l~aH~D~vp~ 97 (418)
T 1xmb_A 28 DWMVKIRRKIHENPELGYEELETSKLIRSELELIG--IKYRYPV-------AITGVIGYIGTGEP-PFVALRADMDALPI 97 (418)
T ss_dssp HHHHHHHHHHHHSCCCTTCCHHHHHHHHHHHHHHT--CCEEEEE-------TTTEEEEEEESSSS-CEEEEEEECCCBSC
T ss_pred HHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcC--CeeEecc-------CCcEEEEEEcCCCC-CEEEEEecccccCC
Confidence 35578999999999765556677888888888875 7777643 24566665555432 444333 33210 0
Q ss_pred CCCCceEEEEecceeecCCCCCCCCCCcccccccccccchHHHHHHHHHHHHhcC--CCceEEEEEEeeccc
Q 007947 341 GSAKIKLALVGKGLTFDSGGYNIKTGPGCLIENMKYDMGGAAAVLGAAKAIGQIK--PPGVEVHFIVAACEN 410 (583)
Q Consensus 341 ~~~~~~i~LVGKGiTFDsGG~slKp~~~~~M~~MK~DM~GAAaVlga~~aia~lk--lp~vnV~~ii~~~EN 410 (583)
++. .+.-|.+ .+.+.- ....| | +|.|+.+++++++.+.+ ++ .+|..+.-..|=
T Consensus 98 ~~~--------~~~pf~~----~~~g~~-~g~G~--d-~~~a~~l~a~~~l~~~~~~~~-~~v~~~~~~~EE 152 (418)
T 1xmb_A 98 QEG--------VEWEHKS----KIAGKM-HACGH--D-GHVTMLLGAAKILHEHRHHLQ-GTVVLIFQPAEE 152 (418)
T ss_dssp CCC--------CCSTTCC----SSTTCB-CCSSH--H-HHHHHHHHHHHHHHHTGGGCS-SEEEEEEECCTT
T ss_pred CCC--------CCCCccc----CCCCce-EeCCc--h-HHHHHHHHHHHHHHhccccCC-ceEEEEEecccc
Confidence 000 1122331 111110 01223 3 79999999999998865 55 688877766654
No 23
>1ysj_A Protein YXEP; M20 family peptidase, dinuclear metal binding, structural GE PSI, protein structure initiative; 2.40A {Bacillus subtilis} SCOP: c.56.5.4 d.58.19.1
Probab=65.86 E-value=17 Score=37.74 Aligned_cols=121 Identities=13% Similarity=0.099 Sum_probs=67.4
Q ss_pred HHHHHHHHhhcCCCCCCChHHHHHHHHHHhhhcCCceEEEEeCHHHHHHcCCCchhhhcccCCCCCeE-EEEEEcC--CC
Q 007947 264 SAVIFGRELVNSPANVLTPAVLAEEASKVASMYSDVLSATILDIEKCKELKMGSYLGVAAASANLPHF-IHLCYKP--PG 340 (583)
Q Consensus 264 ~~~~~aRdL~n~P~N~ltP~~~A~~a~~~~~~~~~~~~v~V~d~~~l~~~gmg~llaV~~GS~~pPrl-i~l~Y~g--~~ 340 (583)
+-+.+-|+|+..|.---.-...++...+.+++++ +++++.+ .|-..+++.=+|+...|.+ +.-+|.- .+
T Consensus 33 ~~i~~~~~l~~ips~s~~e~~~~~~l~~~l~~~G--~~v~~~~------~~~~nv~a~~~g~~~~~~i~l~~H~D~vp~~ 104 (404)
T 1ysj_A 33 RLINMRRDLHEHPELSFQEVETTKKIRRWLEEEQ--IEILDVP------QLKTGVIAEIKGREDGPVIAIRADIDALPIQ 104 (404)
T ss_dssp HHHHHHHHHHHSCCCTTCCHHHHHHHHHHHHHTT--CEECCCT------TCSSCEEEEEECSSCCCEEEEEEECCCBSCC
T ss_pred HHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHcC--CceEEec------cCCceEEEEEeCCCCCCEEEEEEecccccCC
Confidence 3478899999999866666788888888888875 7775543 1223555554454222333 3323321 00
Q ss_pred CCCCceEEEEecceeecCCCCCCCCCCcccccccccccchHHHHHHHHHHHHhc--CCCceEEEEEEeeccc
Q 007947 341 GSAKIKLALVGKGLTFDSGGYNIKTGPGCLIENMKYDMGGAAAVLGAAKAIGQI--KPPGVEVHFIVAACEN 410 (583)
Q Consensus 341 ~~~~~~i~LVGKGiTFDsGG~slKp~~~~~M~~MK~DM~GAAaVlga~~aia~l--klp~vnV~~ii~~~EN 410 (583)
.....| | +.+ ..| .|. .+...+|.|+.+++++++.+. +++ .+|..+.-..|=
T Consensus 105 ~~~~~P---------f-----~~~-~~g-~l~-g~G~kg~~a~~l~a~~~l~~~~~~~~-~~v~~~~~~~EE 158 (404)
T 1ysj_A 105 EQTNLP---------F-----ASK-VDG-TMH-ACGHDFHTASIIGTAMLLNQRRAELK-GTVRFIFQPAEE 158 (404)
T ss_dssp CCCCCT---------T-----CCS-STT-CBC-TTSHHHHHHHHHHHHHHHHTCGGGCS-SEEEEEEESCTT
T ss_pred CCCCCC---------c-----ccC-CCC-ceE-cCcChHHHHHHHHHHHHHHhccccCC-ceEEEEEecccc
Confidence 000011 1 101 000 121 111138999999999999885 455 677777655543
No 24
>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis}
Probab=65.37 E-value=2.2 Score=35.45 Aligned_cols=26 Identities=35% Similarity=0.484 Sum_probs=21.4
Q ss_pred ecccCCCCCCCCCCcEEEccCCcEEE
Q 007947 407 ACENMISGTGMRPGDIITAANGKTIE 432 (583)
Q Consensus 407 ~~ENm~sg~A~rPGDVvts~~GkTVE 432 (583)
..+|.|....++|||+|++.||+.|.
T Consensus 8 V~~~spA~~GL~~GD~I~~InG~~v~ 33 (91)
T 2kjp_A 8 VVENMPAKGKIEVGDKIISADGKNYQ 33 (91)
T ss_dssp CCCSSCCSSCCCSSCEEEEETTBCCS
T ss_pred ECCCChHHHcCCCCCEEEEECCEECC
Confidence 34677766689999999999999874
No 25
>3tx8_A Succinyl-diaminopimelate desuccinylase; peptidase, structural genomics, joint center for structural JCSG; 2.97A {Corynebacterium glutamicum}
Probab=64.98 E-value=47 Score=33.52 Aligned_cols=119 Identities=13% Similarity=0.156 Sum_probs=68.1
Q ss_pred HHHHHHhhcCCCCCCChHHHHHHHHHHhhhcCC-ceEEEEeCHHHHHHcCCCchhhhcccCCCCCeEEEEEEcCCCCCCC
Q 007947 266 VIFGRELVNSPANVLTPAVLAEEASKVASMYSD-VLSATILDIEKCKELKMGSYLGVAAASANLPHFIHLCYKPPGGSAK 344 (583)
Q Consensus 266 ~~~aRdL~n~P~N~ltP~~~A~~a~~~~~~~~~-~~~v~V~d~~~l~~~gmg~llaV~~GS~~pPrli~l~Y~g~~~~~~ 344 (583)
+.+.|+|++.|.---.....++...+..++++- +++++. .+ +.+++.-.|...|+.++.-+|.-= +. .
T Consensus 16 ~~~~~~l~~~ps~s~~e~~~~~~l~~~l~~~G~~~~~~~~--------~~-~~~~a~~~~~~~~~v~l~~H~D~v-p~-~ 84 (369)
T 3tx8_A 16 IVLTQRLVDIPSPSGQEKQIADEIEDALRNLNLPGVEVFR--------FN-NNVLARTNRGLASRVMLAGHIDTV-PI-A 84 (369)
T ss_dssp HHHHHHHHSSCCBTTCTHHHHHHHHHHHHTTTCTTCEEEE--------ET-TEEEEECCCCCSCEEEEEEECCBS-CC-C
T ss_pred HHHHHHHhcCCCCCccHHHHHHHHHHHHHhcCCCCcEEec--------cC-CcEEEEecCCCCCeEEEEcccCcc-CC-C
Confidence 578899999998777777888888888887641 234432 12 346665444433333333333310 00 0
Q ss_pred ceEEEEecceeecCCCCCCCCCCcccccccc-ccc-chHHHHHHHHHHHHhc-CCCceEEEEEEeecccC
Q 007947 345 IKLALVGKGLTFDSGGYNIKTGPGCLIENMK-YDM-GGAAAVLGAAKAIGQI-KPPGVEVHFIVAACENM 411 (583)
Q Consensus 345 ~~i~LVGKGiTFDsGG~slKp~~~~~M~~MK-~DM-~GAAaVlga~~aia~l-klp~vnV~~ii~~~ENm 411 (583)
. . |+ ..++.. .|..=- .|| +|.|+.+++++++.+. +++ .+|..+.-..|=.
T Consensus 85 ~-------~--~~---~~~~~g---~~~g~G~~D~K~~~a~~l~a~~~l~~~~~~~-~~v~~~~~~~EE~ 138 (369)
T 3tx8_A 85 D-------N--LP---SRVEDG---IMYGCGTVDMKSGLAVYLHTFATLATSTELK-HDLTLIAYECEEV 138 (369)
T ss_dssp S-------C--CS---CEECSS---EEESSSTTTTHHHHHHHHHHHHHHTSCTTCC-SEEEEEEECCCSS
T ss_pred C-------C--CC---CeEECC---EEEcCCcccchHHHHHHHHHHHHHHhhcCCC-ccEEEEEEecccc
Confidence 0 1 11 111211 222211 277 8999999999999875 345 7888877666653
No 26
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=64.00 E-value=3.7 Score=34.23 Aligned_cols=26 Identities=23% Similarity=0.429 Sum_probs=21.3
Q ss_pred ecccCCCCCC-CCCCcEEEccCCcEEE
Q 007947 407 ACENMISGTG-MRPGDIITAANGKTIE 432 (583)
Q Consensus 407 ~~ENm~sg~A-~rPGDVvts~~GkTVE 432 (583)
..+|.|...| +++||+|.+.||+.|+
T Consensus 37 V~~~spA~~aGl~~GD~I~~ing~~v~ 63 (102)
T 2d90_A 37 IEPGSPAEAAGLKNNDLVVAVNGKSVE 63 (102)
T ss_dssp CCTTSTTTTTTCCTTCEEEEESSCBCT
T ss_pred ECCCCHHHHcCCCCCCEEEEECCEECC
Confidence 4567777766 9999999999999763
No 27
>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A
Probab=63.87 E-value=2.8 Score=35.13 Aligned_cols=33 Identities=24% Similarity=0.418 Sum_probs=24.5
Q ss_pred CceEEEEEEeecccCCCCCCCCCCcEEEccCCcEEE
Q 007947 397 PGVEVHFIVAACENMISGTGMRPGDIITAANGKTIE 432 (583)
Q Consensus 397 p~vnV~~ii~~~ENm~sg~A~rPGDVvts~~GkTVE 432 (583)
.++-|.. ..+|.|....++|||+|++.||+.|+
T Consensus 7 ~Gv~V~~---V~~~spA~~GL~~GD~I~~Ing~~v~ 39 (100)
T 3i18_A 7 DGVYVMS---VKDDVPAADVLHAGDLITEIDGNAFK 39 (100)
T ss_dssp CCEEEEE---ECTTSGGGGTCCTTCEEEEETTBCCS
T ss_pred CCEEEEE---eCCCCchHHCCCCCCEEEEECCEECC
Confidence 3455544 45677766679999999999999874
No 28
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A
Probab=63.19 E-value=4.1 Score=33.44 Aligned_cols=31 Identities=23% Similarity=0.279 Sum_probs=23.7
Q ss_pred eEEEEEEeecccCCCCCC-CCCCcEEEccCCcEEE
Q 007947 399 VEVHFIVAACENMISGTG-MRPGDIITAANGKTIE 432 (583)
Q Consensus 399 vnV~~ii~~~ENm~sg~A-~rPGDVvts~~GkTVE 432 (583)
+-|..+ .+|.|.-.+ +++||+|.+.||+.|+
T Consensus 31 ~~V~~V---~~~spA~~aGL~~GD~I~~ing~~v~ 62 (93)
T 2dls_A 31 VLVQSV---RPGGAAMKAGVKEGDRIIKVNGTMVT 62 (93)
T ss_dssp CEEEEE---CSSSTTTTTTCCSSCEEEEETTEECS
T ss_pred EEEEEE---CCCCHHHHcCCCCCCEEEEECCEECC
Confidence 555544 467777666 9999999999998764
No 29
>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: b.36.1.6
Probab=62.32 E-value=3.3 Score=36.59 Aligned_cols=32 Identities=22% Similarity=0.371 Sum_probs=24.6
Q ss_pred ceEEEEEEeecccCCCCCCCCCCcEEEccCCcEEE
Q 007947 398 GVEVHFIVAACENMISGTGMRPGDIITAANGKTIE 432 (583)
Q Consensus 398 ~vnV~~ii~~~ENm~sg~A~rPGDVvts~~GkTVE 432 (583)
++-|.. ..+|.|...+++|||+|++.||+.|.
T Consensus 26 gv~V~~---V~~~spA~~aL~~GD~Il~InG~~v~ 57 (125)
T 2hga_A 26 GVQIDS---VVPGSPASKVLTPGLVIESINGMPTS 57 (125)
T ss_dssp CEEEEE---ECSSSGGGGTSCTTCEEEEETTEECS
T ss_pred ceEEEE---ECCCChHHHhcCCCCEEEEECCEEcC
Confidence 344444 45788877779999999999998774
No 30
>1vgy_A Succinyl-diaminopimelate desuccinylase; structural genomics, unknown function; HET: MSE; 1.90A {Neisseria meningitidis} SCOP: c.56.5.4 d.58.19.1
Probab=62.20 E-value=47 Score=34.00 Aligned_cols=124 Identities=9% Similarity=0.044 Sum_probs=64.5
Q ss_pred HHHHHHhhcCCCCCCChHHHHHHHHHHhhhcCCceEEEEeCHHHHHHcCCCchhhhcccCCCCCeEEEEEEcCC-CCCCC
Q 007947 266 VIFGRELVNSPANVLTPAVLAEEASKVASMYSDVLSATILDIEKCKELKMGSYLGVAAASANLPHFIHLCYKPP-GGSAK 344 (583)
Q Consensus 266 ~~~aRdL~n~P~N~ltP~~~A~~a~~~~~~~~~~~~v~V~d~~~l~~~gmg~llaV~~GS~~pPrli~l~Y~g~-~~~~~ 344 (583)
+.+-|+|++.|.=--.-...++...+..++++ +++++...+ +.+.+++.= |+..|+.++.-+|.-= .++.
T Consensus 9 ~~~l~~lv~~ps~s~~e~~~~~~l~~~l~~~G--~~~~~~~~~-----~~~nv~a~~-g~~~~~i~l~~H~D~Vp~~~~- 79 (393)
T 1vgy_A 9 LELAKELISRPSVTPDDRDCQKLMAERLHKIG--FAAEEMHFG-----NTKNIWLRR-GTKAPVVCFAGHTDVVPTGPV- 79 (393)
T ss_dssp HHHHHHHHTSCCBTTCCTTHHHHHHHHHHTTT--CEEEECCBT-----TBCEEEEEE-CSSSSEEEEEEECCBCCCCCG-
T ss_pred HHHHHHHhcCCCCCCCcHHHHHHHHHHHHHcC--CcEEEEecC-----CCcEEEEEE-CCCCCEEEEEcccCCcCCCCc-
Confidence 56788999998744333456777777788775 888876421 345555543 4322323332233210 0000
Q ss_pred ceEEEEecceeecCCCCC--CCCCCccccccc-cccc-chHHHHHHHHHHHHhc--CCCceEEEEEEeecccC
Q 007947 345 IKLALVGKGLTFDSGGYN--IKTGPGCLIENM-KYDM-GGAAAVLGAAKAIGQI--KPPGVEVHFIVAACENM 411 (583)
Q Consensus 345 ~~i~LVGKGiTFDsGG~s--lKp~~~~~M~~M-K~DM-~GAAaVlga~~aia~l--klp~vnV~~ii~~~ENm 411 (583)
.+.+.|- ++ ++.+ .|..= ..|| +|.|+++.+++++.+. +++ .+|..+.-..|=.
T Consensus 80 -------~~w~~~P--f~~~~~~g---~l~grG~~D~k~~~aa~l~a~~~l~~~~~~~~-~~v~~~~~~~EE~ 139 (393)
T 1vgy_A 80 -------EKWDSPP--FEPAERDG---RLYGRGAADMKTSIACFVTACERFVAKHPNHQ-GSIALLITSDEEG 139 (393)
T ss_dssp -------GGSSSCT--TSCEEETT---EEESTTTTTTHHHHHHHHHHHHHHHHHCTTCS-SEEEEEEESCSSS
T ss_pred -------ccCCCCC--CceEEECC---EEEecCcccchHHHHHHHHHHHHHHHhcCCCC-CcEEEEEEecccc
Confidence 0111110 10 1110 11100 1277 6677888888888764 355 6888887777654
No 31
>3isz_A Succinyl-diaminopimelate desuccinylase; DAPE, Zn-binding, metallopeptidase, structural genomics, PSI-2, protein struc initiative; 2.00A {Haemophilus influenzae} PDB: 3ic1_A
Probab=60.27 E-value=30 Score=34.81 Aligned_cols=126 Identities=11% Similarity=0.117 Sum_probs=66.2
Q ss_pred HHHHHHHhhcCCCCCCChHHHHHHHHHHhhhcCCceEEEEeCHHHHHHcCCCchhhhcccCCCCCeEEE-EEEcCC-CCC
Q 007947 265 AVIFGRELVNSPANVLTPAVLAEEASKVASMYSDVLSATILDIEKCKELKMGSYLGVAAASANLPHFIH-LCYKPP-GGS 342 (583)
Q Consensus 265 ~~~~aRdL~n~P~N~ltP~~~A~~a~~~~~~~~~~~~v~V~d~~~l~~~gmg~llaV~~GS~~pPrli~-l~Y~g~-~~~ 342 (583)
-+.+-|+|++.|+---.-...++...+..++++ ++++..+.+ +.+.+++.- |+. .|+++. -+|.-= .++
T Consensus 5 ~~~~~~~L~~~ps~s~~e~~~~~~l~~~l~~~g--~~~~~~~~~-----~~~n~~a~~-g~~-~~~i~l~aH~D~vp~~~ 75 (377)
T 3isz_A 5 VVSLAQDLIRRPSISPNDEGCQQIIAERLEKLG--FQIEWMPFN-----DTLNLWAKH-GTS-EPVIAFAGHTDVVPTGD 75 (377)
T ss_dssp HHHHHHHHHTSCCBTTCCTTHHHHHHHHHHHTT--CEEEECCBT-----TBCEEEEEE-ESS-SCEEEEEEECCBCCCCC
T ss_pred HHHHHHHHhcCCCCCCChhhHHHHHHHHHHHCC--CceEEeecC-----CCceEEEEe-CCC-CCEEEEeccccccCCCC
Confidence 457889999998755555566777788888875 888875321 456666643 543 344333 333210 000
Q ss_pred CCceEEEEecceeecCCCCCCCCCCccccccc-cccc-chHHHHHHHHHHHHhcC--CCceEEEEEEeecccC
Q 007947 343 AKIKLALVGKGLTFDSGGYNIKTGPGCLIENM-KYDM-GGAAAVLGAAKAIGQIK--PPGVEVHFIVAACENM 411 (583)
Q Consensus 343 ~~~~i~LVGKGiTFDsGG~slKp~~~~~M~~M-K~DM-~GAAaVlga~~aia~lk--lp~vnV~~ii~~~ENm 411 (583)
. .+-+.|- ++.+-..+ .|..= ..|| +|.++.+.+++++.+.+ ++ .+|..+.-..|-.
T Consensus 76 ~--------~~w~~~p--f~~~~~~g-~~~g~G~~D~k~g~~~~l~a~~~l~~~~~~~~-~~v~~~~~~~EE~ 136 (377)
T 3isz_A 76 E--------NQWSSPP--FSAEIIDG-MLYGRGAADMKGSLAAMIVAAEEYVKANPNHK-GTIALLITSDEEA 136 (377)
T ss_dssp G--------GGCSSCT--TSCCEETT-EEESTTTTTTHHHHHHHHHHHHHHHHHCTTCS-SEEEEEEESCSSS
T ss_pred c--------ccCCCCC--CCcEEECC-EEEeCChhhhhHHHHHHHHHHHHHHHhCCCCC-ceEEEEEEccccc
Confidence 0 0000000 00000000 11111 1266 56788888888876553 45 6787777666653
No 32
>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens}
Probab=59.29 E-value=2.6 Score=34.13 Aligned_cols=31 Identities=16% Similarity=0.101 Sum_probs=22.0
Q ss_pred eEEEEEEeecccCCCCCC-CCCCcEEEccCCcEEE
Q 007947 399 VEVHFIVAACENMISGTG-MRPGDIITAANGKTIE 432 (583)
Q Consensus 399 vnV~~ii~~~ENm~sg~A-~rPGDVvts~~GkTVE 432 (583)
+-|..+ .+|.|...| ++|||+|.+.||+.|.
T Consensus 30 ~~V~~V---~~~spA~~aGl~~GD~I~~ing~~v~ 61 (90)
T 2eaq_A 30 IFVASV---EAGSPAEFSQLQVDDEIIAINNTKFS 61 (90)
T ss_dssp EEEEEE---CTTSHHHHTTCCTTCEEEEETTEECC
T ss_pred EEEEEE---CCCChHHHcCCCCCCEEEEECCEEcc
Confidence 455444 355555444 9999999999998773
No 33
>2fvg_A Endoglucanase; TM1049, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; 2.01A {Thermotoga maritima} SCOP: b.49.3.1 c.56.5.4
Probab=59.13 E-value=21 Score=36.11 Aligned_cols=56 Identities=9% Similarity=0.062 Sum_probs=38.3
Q ss_pred HHHHhhcCCCCCCChHHHHHHHHHHhhhcCCceEEEEeCHHHHHHcCCCchhhhcccCCCCCeEEE
Q 007947 268 FGRELVNSPANVLTPAVLAEEASKVASMYSDVLSATILDIEKCKELKMGSYLGVAAASANLPHFIH 333 (583)
Q Consensus 268 ~aRdL~n~P~N~ltP~~~A~~a~~~~~~~~~~~~v~V~d~~~l~~~gmg~llaV~~GS~~pPrli~ 333 (583)
+-++|++.|+---....+++..++..++++ +++++ | .+|.+++.-.|....|+++.
T Consensus 3 ~l~~L~~~~s~sg~e~~~~~~l~~~l~~~g--~~~~~-d-------~~gnlia~~~g~~~~~~v~l 58 (340)
T 2fvg_A 3 YLKELSMMPGVSGDEGKVRDFIKSKIEGLV--DNLYT-D-------VLGNLIALKRGRDSSKKLLV 58 (340)
T ss_dssp CHHHHHHSCCBTTCCHHHHHHHHHHHGGGS--SEEEE-C-------TTSCEEEEECCSEEEEEEEE
T ss_pred HHHHHHcCCCCCCchHHHHHHHHHHHHhhC--CEEEE-e-------CCCcEEEEecCCCCCceEEE
Confidence 357888888866667788999989888886 77776 2 34677776556433344443
No 34
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens}
Probab=58.99 E-value=4.7 Score=32.48 Aligned_cols=24 Identities=25% Similarity=0.519 Sum_probs=18.9
Q ss_pred ccCCCCCCCCCCcEEEccCCcEEE
Q 007947 409 ENMISGTGMRPGDIITAANGKTIE 432 (583)
Q Consensus 409 ENm~sg~A~rPGDVvts~~GkTVE 432 (583)
+|.|....++|||+|.+.||+.|+
T Consensus 35 ~~spA~aGl~~GD~I~~vng~~v~ 58 (88)
T 3bpu_A 35 VDSPRSRGLKEGDLIVEVNKKNVQ 58 (88)
T ss_dssp CC--CCTTCCTTCEEEEETTEECT
T ss_pred cCChhHhCCCCCCEEEEECCEEcC
Confidence 677777679999999999998773
No 35
>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans}
Probab=58.89 E-value=3.4 Score=34.30 Aligned_cols=26 Identities=31% Similarity=0.475 Sum_probs=21.4
Q ss_pred ecccCCCCCCCCCCcEEEccCCcEEE
Q 007947 407 ACENMISGTGMRPGDIITAANGKTIE 432 (583)
Q Consensus 407 ~~ENm~sg~A~rPGDVvts~~GkTVE 432 (583)
..+|.|....++|||+|.+.||+.|.
T Consensus 12 V~~~spA~~GL~~GD~Il~InG~~v~ 37 (94)
T 2kl1_A 12 VLPNMPAAGRLEAGDRIAAIDGQPIN 37 (94)
T ss_dssp CCTTSTTBTTBCTTCEEEEETTBCCC
T ss_pred ECCCChHHhCCCCCCEEEEECCEECC
Confidence 44677766679999999999999874
No 36
>3t68_A Succinyl-diaminopimelate desuccinylase; DAPE, csgid, metalloenzyme, structural genomics; 1.65A {Vibrio cholerae o1 biovar el tor} PDB: 3t6m_A
Probab=58.50 E-value=20 Score=35.00 Aligned_cols=121 Identities=15% Similarity=0.193 Sum_probs=65.5
Q ss_pred HHHHHHHhhcCCCCCCChHHHHHHHHHHhhhcCCceEEEEeCHHHHHHcCCCchhhhcccCCCCCeEEEE-EEc--CCCC
Q 007947 265 AVIFGRELVNSPANVLTPAVLAEEASKVASMYSDVLSATILDIEKCKELKMGSYLGVAAASANLPHFIHL-CYK--PPGG 341 (583)
Q Consensus 265 ~~~~aRdL~n~P~N~ltP~~~A~~a~~~~~~~~~~~~v~V~d~~~l~~~gmg~llaV~~GS~~pPrli~l-~Y~--g~~~ 341 (583)
-+.+.|+|++.|+---.....++...+..++.+ +++++.+.. +.+.+++.- |+. .|.++.. +|. |.+.
T Consensus 8 ~~~~l~~lv~ips~s~~e~~~~~~l~~~l~~~G--~~~~~~~~~-----~~~nv~a~~-g~~-~~~i~l~~H~D~vp~~~ 78 (268)
T 3t68_A 8 VLALAKELISRQSVTPADAGCQDLMIERLKALG--FEIESMVFE-----DTTNFWARR-GTQ-SPLFVFAGHTDVVPAGP 78 (268)
T ss_dssp HHHHHHHHHTSCCBTTCCTTHHHHHHHHHHHTT--CEECCCEET-----TEEC-CEEE-CSS-SCEEEEEEECCBCCCCC
T ss_pred HHHHHHHHhCCCCCCCCchHHHHHHHHHHHHCC--CeEEEEecC-----CccEEEEEe-CCC-CCeEEEEccccccCCCC
Confidence 357889999999866666677888888888875 887765321 234454432 443 3443333 332 1100
Q ss_pred C---CCceEE-EEecceeecCCCCCCCCCCccccccccccc-chHHHHHHHHHHHHhcC--CCceEEEEEEeeccc
Q 007947 342 S---AKIKLA-LVGKGLTFDSGGYNIKTGPGCLIENMKYDM-GGAAAVLGAAKAIGQIK--PPGVEVHFIVAACEN 410 (583)
Q Consensus 342 ~---~~~~i~-LVGKGiTFDsGG~slKp~~~~~M~~MK~DM-~GAAaVlga~~aia~lk--lp~vnV~~ii~~~EN 410 (583)
. ...|.. -+- +|.=.=++ -.|| +|.|+++.+++++.+.+ ++ .+|..+.-..|=
T Consensus 79 ~~~w~~~pf~~~~~-------~g~~~g~G--------~~D~k~g~a~~l~a~~~l~~~~~~~~-~~v~~~~~~~EE 138 (268)
T 3t68_A 79 LSQWHTPPFEPTVI-------DGFLHGRG--------AADMKGSLACMIVAVERFIAEHPDHQ-GSIGFLITSDEE 138 (268)
T ss_dssp GGGCSSCTTSCEEE-------TTEEESTT--------TTTTHHHHHHHHHHHHHHHHHCTTCS-SEEEEEEESCTT
T ss_pred cccCCCCCCccEEE-------CCEEEecC--------cccchHHHHHHHHHHHHHHHhCCCCC-CcEEEEEEeCCc
Confidence 0 000100 000 11100011 1344 68888999999987764 44 678777666665
No 37
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}
Probab=56.87 E-value=2.4 Score=34.86 Aligned_cols=31 Identities=19% Similarity=0.306 Sum_probs=22.7
Q ss_pred eEEEEEEeecccCCCCCC-CCCCcEEEccCCcEEE
Q 007947 399 VEVHFIVAACENMISGTG-MRPGDIITAANGKTIE 432 (583)
Q Consensus 399 vnV~~ii~~~ENm~sg~A-~rPGDVvts~~GkTVE 432 (583)
+-|..+ .+|.|...| .+|||+|.+.||+.|+
T Consensus 32 ~~V~~V---~~~spA~~aGl~~GD~I~~ing~~v~ 63 (96)
T 2v90_A 32 QFLWEV---DPGLPAKKAGMQAGDRLVAVAGESVE 63 (96)
T ss_dssp EEEEEE---CTTSHHHHTTCCTTEEEEEETTEECT
T ss_pred eEEEEE---CCCChHHHcCCCCCCEEEEECCEECC
Confidence 444444 456665555 9999999999998773
No 38
>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A
Probab=56.35 E-value=7.2 Score=31.87 Aligned_cols=31 Identities=26% Similarity=0.282 Sum_probs=23.6
Q ss_pred eEEEEEEeecccCCCCCCCCCCcEEEccCCcEEE
Q 007947 399 VEVHFIVAACENMISGTGMRPGDIITAANGKTIE 432 (583)
Q Consensus 399 vnV~~ii~~~ENm~sg~A~rPGDVvts~~GkTVE 432 (583)
+-|..+ .+|.|....++|||+|.+.||+.|+
T Consensus 37 v~V~~V---~~~spA~~gL~~GD~I~~vng~~v~ 67 (95)
T 1mfg_A 37 IFVTRV---QPEGPASKLLQPGDKIIQANGYSFI 67 (95)
T ss_dssp EEEEEE---CTTSTTTTTCCTTCEEEEETTEECT
T ss_pred EEEEEE---CCCCchhhCCCCCCEEEEECCEEcC
Confidence 555554 4677766689999999999998764
No 39
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus}
Probab=55.95 E-value=4 Score=34.85 Aligned_cols=26 Identities=19% Similarity=0.240 Sum_probs=21.0
Q ss_pred ecccCCCCCC-CCCCcEEEccCCcEEE
Q 007947 407 ACENMISGTG-MRPGDIITAANGKTIE 432 (583)
Q Consensus 407 ~~ENm~sg~A-~rPGDVvts~~GkTVE 432 (583)
..+|.|...| .+|||+|.+.||+.|+
T Consensus 45 V~~~spA~~aGL~~GD~I~~ing~~v~ 71 (114)
T 2edz_A 45 IEEGSPAEKAGLLDGDRVLRINGVFVD 71 (114)
T ss_dssp CCTTCTTGGGTCCTTCEEEEESSSBCS
T ss_pred eCCCChHHHcCCCCCCEEEEECCEECC
Confidence 4567776666 9999999999998773
No 40
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens}
Probab=55.86 E-value=2.6 Score=34.79 Aligned_cols=31 Identities=19% Similarity=0.237 Sum_probs=22.4
Q ss_pred eEEEEEEeecccCCCCCC-CCCCcEEEccCCcEEE
Q 007947 399 VEVHFIVAACENMISGTG-MRPGDIITAANGKTIE 432 (583)
Q Consensus 399 vnV~~ii~~~ENm~sg~A-~rPGDVvts~~GkTVE 432 (583)
+-|..+ .+|.|...| ++|||+|.+.||+.|+
T Consensus 35 ~~V~~V---~~~spA~~aGl~~GD~I~~ing~~v~ 66 (98)
T 2jxo_A 35 QFIRSV---DPDSPAEASGLRAQDRIVEVNGVCME 66 (98)
T ss_dssp EEEEEE---CTTSHHHHHTCCTTCEEEEETTEECT
T ss_pred EEEEEE---CCCCHHHHcCCCCCCEEEEECCEECC
Confidence 555554 356555444 9999999999998773
No 41
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens}
Probab=55.79 E-value=2.7 Score=33.89 Aligned_cols=31 Identities=13% Similarity=0.333 Sum_probs=21.4
Q ss_pred eEEEEEEeecccCCCCCC-CCCCcEEEccCCcEEE
Q 007947 399 VEVHFIVAACENMISGTG-MRPGDIITAANGKTIE 432 (583)
Q Consensus 399 vnV~~ii~~~ENm~sg~A-~rPGDVvts~~GkTVE 432 (583)
+-|..+. +|.|...| ++|||+|.+.||+.|+
T Consensus 29 ~~V~~V~---~~spA~~aGl~~GD~I~~ing~~v~ 60 (88)
T 2uzc_A 29 LTISSLK---DGGKAAQANVRIGDVVLSIDGINAQ 60 (88)
T ss_dssp EEEEEEC---TTSHHHHTTCCTTCEEEEETTEECT
T ss_pred eEEEEEC---CCChHHHcCCCCCCEEEEECCEECC
Confidence 5555543 45554333 9999999999998763
No 42
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens}
Probab=55.68 E-value=5 Score=31.98 Aligned_cols=25 Identities=28% Similarity=0.396 Sum_probs=19.1
Q ss_pred cccCCCCC-CCCCCcEEEccCCcEEE
Q 007947 408 CENMISGT-GMRPGDIITAANGKTIE 432 (583)
Q Consensus 408 ~ENm~sg~-A~rPGDVvts~~GkTVE 432 (583)
.+|.|... .++|||+|.+.||+.|+
T Consensus 31 ~~~spA~~aGl~~GD~I~~ing~~v~ 56 (83)
T 2kv8_A 31 MRGSPADFVGLRAGDQILAVNEINVK 56 (83)
T ss_dssp CTTSTTTTTTCCTTCEEEEETTEECS
T ss_pred CCCChHHHcCCCCCCEEEEECCEECC
Confidence 35555544 39999999999998774
No 43
>3dlj_A Beta-Ala-His dipeptidase; CNDP1, carnosine dipeptidase 1, structural genomics, structu genomics consortium, SGC, metallopeptidase M20 family; 2.26A {Homo sapiens}
Probab=55.23 E-value=1.2e+02 Score=32.01 Aligned_cols=131 Identities=18% Similarity=0.217 Sum_probs=72.2
Q ss_pred HHHHHHHHHhhcCCCC--CCCh------HHHHHHHHHHhhhcCCceEEEEeCHHHHHHcCCCchhhhcccCC-CCCeEEE
Q 007947 263 SSAVIFGRELVNSPAN--VLTP------AVLAEEASKVASMYSDVLSATILDIEKCKELKMGSYLGVAAASA-NLPHFIH 333 (583)
Q Consensus 263 a~~~~~aRdL~n~P~N--~ltP------~~~A~~a~~~~~~~~~~~~v~V~d~~~l~~~gmg~llaV~~GS~-~pPrli~ 333 (583)
.+-+.+-|+|++.|+= --.| ...++...+..++++ +++++.+... ... ..|.. ..|..|+
T Consensus 25 ~~~i~~l~~lv~ips~~~s~~~~~~~~~~~~~~~l~~~l~~~G--~~~~~~~~~~---~~~------~~g~~~~~~~~v~ 93 (485)
T 3dlj_A 25 DEFVQTLKEWVAIESDSVQPVPRFRQELFRMMAVAADTLQRLG--ARVASVDMGP---QQL------PDGQSLPIPPVIL 93 (485)
T ss_dssp HHHHHHHHHHHTSCCBSSSCCHHHHHHHHHHHHHHHHHHHHTT--CEEEEECCCE---EEC--------CCEEECCCEEE
T ss_pred HHHHHHHHHHhcCCCccCCCCccccHHHHHHHHHHHHHHHHcC--CeEEEEecCc---ccc------cCCCccCCCcEEE
Confidence 4567889999999986 6665 356777777788775 8887764210 000 00110 0022333
Q ss_pred EEEcCCCCCCCceEEEEecceeecCC------CCC---CCC--CCccccccc-cccc-chHHHHHHHHHHHHhcC--CCc
Q 007947 334 LCYKPPGGSAKIKLALVGKGLTFDSG------GYN---IKT--GPGCLIENM-KYDM-GGAAAVLGAAKAIGQIK--PPG 398 (583)
Q Consensus 334 l~Y~g~~~~~~~~i~LVGKGiTFDsG------G~s---lKp--~~~~~M~~M-K~DM-~GAAaVlga~~aia~lk--lp~ 398 (583)
.++.+ +...++|+|.|= +|+= +.+ .++ ..+ .|..= ..|| +|.|+.+++++++.+.+ ++
T Consensus 94 a~~~~--~~~~~~i~l~aH---~D~vp~~~~~~w~~~Pf~~~~~~g-~l~grG~~D~k~~~a~~l~a~~~l~~~~~~~~- 166 (485)
T 3dlj_A 94 AELGS--DPTKGTVCFYGH---LDVQPADRGDGWLTDPYVLTEVDG-KLYGRGATDNKGPVLAWINAVSAFRALEQDLP- 166 (485)
T ss_dssp EEECC--CTTSCEEEEEEE---CCBCCCCGGGTCSSCTTSCEEETT-EEESTTTTTTHHHHHHHHHHHHHHHHTTCCCS-
T ss_pred EEECC--CCCCCEEEEEee---ecCCCCCCcccCCCCCCccEEECC-EEEecccccCcHHHHHHHHHHHHHHHhCCCCC-
Confidence 34433 123456666552 3321 111 111 010 12111 2366 78899999999998875 55
Q ss_pred eEEEEEEeecccC
Q 007947 399 VEVHFIVAACENM 411 (583)
Q Consensus 399 vnV~~ii~~~ENm 411 (583)
.+|..+.-..|=.
T Consensus 167 ~~v~~~~~~~EE~ 179 (485)
T 3dlj_A 167 VNIKFIIEGMEEA 179 (485)
T ss_dssp SEEEEEEESCGGG
T ss_pred ccEEEEEEccccc
Confidence 7888887777653
No 44
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*
Probab=55.21 E-value=3.4 Score=33.60 Aligned_cols=31 Identities=19% Similarity=0.343 Sum_probs=21.4
Q ss_pred eEEEEEEeecccCCCCC-CCCCCcEEEccCCcEEE
Q 007947 399 VEVHFIVAACENMISGT-GMRPGDIITAANGKTIE 432 (583)
Q Consensus 399 vnV~~ii~~~ENm~sg~-A~rPGDVvts~~GkTVE 432 (583)
+-|..+ .+|.|... .++|||+|.+.||+.|+
T Consensus 29 ~~V~~V---~~~spA~~aGl~~GD~I~~ing~~v~ 60 (91)
T 2pkt_A 29 LAISRV---TPGSKAALANLCIGDVITAIDGENTS 60 (91)
T ss_dssp EEEEEE---CTTSHHHHTTCCTTCEEEEETTEECT
T ss_pred eEEEEE---CCCCHHHHcCCCCCCEEEEECCEECC
Confidence 444444 45555443 39999999999998763
No 45
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A
Probab=54.54 E-value=2.7 Score=33.91 Aligned_cols=31 Identities=39% Similarity=0.590 Sum_probs=21.3
Q ss_pred eEEEEEEeecccCCCCCC-CCCCcEEEccCCcEEE
Q 007947 399 VEVHFIVAACENMISGTG-MRPGDIITAANGKTIE 432 (583)
Q Consensus 399 vnV~~ii~~~ENm~sg~A-~rPGDVvts~~GkTVE 432 (583)
+-|..+. +|.|...+ ++|||+|.+.||+.|+
T Consensus 28 ~~V~~V~---~~spA~~aGL~~GD~I~~ing~~v~ 59 (87)
T 2pa1_A 28 IMVTKVA---ERGKAKDADLRPGDIIVAINGESAE 59 (87)
T ss_dssp EEEEEEC---SSSHHHHTTCCTTCEEEEETTEEST
T ss_pred EEEEEEC---CCChHHHcCCCCCCEEEEECCEECC
Confidence 5555443 45444444 9999999999998763
No 46
>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4
Probab=54.24 E-value=2.8 Score=35.66 Aligned_cols=32 Identities=28% Similarity=0.498 Sum_probs=23.4
Q ss_pred ceEEEEEEeecccCCCCCC-CCCCcEEEccCCcEEE
Q 007947 398 GVEVHFIVAACENMISGTG-MRPGDIITAANGKTIE 432 (583)
Q Consensus 398 ~vnV~~ii~~~ENm~sg~A-~rPGDVvts~~GkTVE 432 (583)
++-|..+ .+|.|...+ ++|||+|++.||+.|.
T Consensus 36 gv~V~~V---~~~spA~~aGl~~GD~I~~ing~~v~ 68 (113)
T 2pzd_A 36 GVLIHKV---ILGSPAHRAGLRPGDVILAIGEQMVQ 68 (113)
T ss_dssp CEEEEEE---BTTSHHHHHTCCTTCEEEEETTEECC
T ss_pred CeEEEEe---CCCChHHHcCCCCCCEEEEECCEECC
Confidence 4555544 456665555 9999999999998874
No 47
>1lfw_A PEPV; hydrolase, dipeptidase; HET: AEP; 1.80A {Bacteria} SCOP: c.56.5.4 d.58.19.1
Probab=53.23 E-value=72 Score=33.35 Aligned_cols=123 Identities=12% Similarity=0.072 Sum_probs=64.7
Q ss_pred HHHHHHHHhhcCCCCCCCh------------HHHHHHHHHHhhhcCCceEEEEeCHHHHHHcCCCchhhhcccCCCCCeE
Q 007947 264 SAVIFGRELVNSPANVLTP------------AVLAEEASKVASMYSDVLSATILDIEKCKELKMGSYLGVAAASANLPHF 331 (583)
Q Consensus 264 ~~~~~aRdL~n~P~N~ltP------------~~~A~~a~~~~~~~~~~~~v~V~d~~~l~~~gmg~llaV~~GS~~pPrl 331 (583)
+-+.+-|+|+..|.---.+ ...++...+.+++.+ ++++..+ +.+.+.-. |...|+.+
T Consensus 15 ~~~~~l~~l~~ips~s~~~~~~~~~p~~~~~~~~~~~l~~~l~~~G--~~~~~~~-------~~~~~~~~--g~~~~~i~ 83 (470)
T 1lfw_A 15 AILKDLEELIAIDSSEDLENATEEYPVGKGPVDAMTKFLSFAKRDG--FDTENFA-------NYAGRVNF--GAGDKRLG 83 (470)
T ss_dssp HHHHHHHHHHTSCCBCCGGGCCSSSTTCHHHHHHHHHHHHHHHHTT--CEEEEET-------TTEEEEEE--CCCSSEEE
T ss_pred HHHHHHHHHcCCCCcCCCccccccCCCcHHHHHHHHHHHHHHHHcC--CeEEEec-------CeEEEEEe--CCCCCeEE
Confidence 3467889999999765544 466788888888875 8887642 22211111 32223333
Q ss_pred EEEEEcCCCCCCCceEEEEecceeecCCCCCCCC-CCcccccccc-ccc-chHHHHHHHHHHHHhcC--CCceEEEEEEe
Q 007947 332 IHLCYKPPGGSAKIKLALVGKGLTFDSGGYNIKT-GPGCLIENMK-YDM-GGAAAVLGAAKAIGQIK--PPGVEVHFIVA 406 (583)
Q Consensus 332 i~l~Y~g~~~~~~~~i~LVGKGiTFDsGG~slKp-~~~~~M~~MK-~DM-~GAAaVlga~~aia~lk--lp~vnV~~ii~ 406 (583)
+.-+|.-- + +|-+-+.| =++.+- ..+ .|..== .|| +|.|+.+++++++.+.+ ++ .+|..+.-
T Consensus 84 l~~H~D~v-p--------~~~~w~~~--Pf~~~~~~~g-~l~grG~~D~K~~~a~~l~a~~~l~~~~~~~~-~~i~~i~~ 150 (470)
T 1lfw_A 84 IIGHMDVV-P--------AGEGWTRD--PFKMEIDEEG-RIYGRGSADDKGPSLTAYYGMLLLKEAGFKPK-KKIDFVLG 150 (470)
T ss_dssp EEEECCBC-C--------CCSCCSSC--TTSCEECTTC-EEESTTSSSSHHHHHHHHHHHHHHHHHTCCCS-SEEEEEEE
T ss_pred EEEeeccc-C--------CCCCccCC--CcceeEeeCC-EEECCCcccChHHHHHHHHHHHHHHHcCCCCC-CCEEEEEe
Confidence 33333210 0 01011110 011000 010 111100 577 88999999999998765 44 67887776
Q ss_pred eccc
Q 007947 407 ACEN 410 (583)
Q Consensus 407 ~~EN 410 (583)
..|=
T Consensus 151 ~~EE 154 (470)
T 1lfw_A 151 TNEE 154 (470)
T ss_dssp SCTT
T ss_pred cCcc
Confidence 6653
No 48
>2gre_A Deblocking aminopeptidase; structural genomi protein structure initiative, midwest center for structural genomics, MCSG, hydrolase; 2.65A {Bacillus cereus} SCOP: b.49.3.1 c.56.5.4
Probab=52.77 E-value=97 Score=31.30 Aligned_cols=58 Identities=14% Similarity=0.152 Sum_probs=40.9
Q ss_pred HHHHHHHhhcCCCCCCChHHHHHHHHHHhhhcCCceEEEEeCHHHHHHcCCCchhhhcccCCCCCeEE
Q 007947 265 AVIFGRELVNSPANVLTPAVLAEEASKVASMYSDVLSATILDIEKCKELKMGSYLGVAAASANLPHFI 332 (583)
Q Consensus 265 ~~~~aRdL~n~P~N~ltP~~~A~~a~~~~~~~~~~~~v~V~d~~~l~~~gmg~llaV~~GS~~pPrli 332 (583)
.+.+-++|++.|+---....+++...+.+++++ +++++. ..|.+++.-+|+...|+++
T Consensus 8 ~~~~l~~lv~i~s~s~~e~~~~~~l~~~l~~~g--~~~~~d--------~~gnl~a~~~g~~~~~~il 65 (349)
T 2gre_A 8 TMELIKELVSIPSPSGNTAKIINFIENYVSEWN--VETKRN--------NKGALILTVKGKNDAQHRL 65 (349)
T ss_dssp HHHHHHHHHTSCCBTTCCHHHHHHHHHHTTTSS--SEEEEC--------SSSCEEEEECCSEEEEEEE
T ss_pred HHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhC--CEEEEe--------cCCcEEEEecCCCCCceEE
Confidence 456789999999866677888998888888875 787763 3456777655653334443
No 49
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens}
Probab=52.31 E-value=2.7 Score=34.51 Aligned_cols=32 Identities=22% Similarity=0.387 Sum_probs=22.4
Q ss_pred ceEEEEEEeecccCCCCCC-CCCCcEEEccCCcEEE
Q 007947 398 GVEVHFIVAACENMISGTG-MRPGDIITAANGKTIE 432 (583)
Q Consensus 398 ~vnV~~ii~~~ENm~sg~A-~rPGDVvts~~GkTVE 432 (583)
++-|..+. +|.|...| ++|||+|.+.||+.|+
T Consensus 35 g~~V~~V~---~~spA~~aGl~~GD~I~~ing~~v~ 67 (97)
T 2w4f_A 35 GIFISRVS---EEGPAARAGVRVGDKLLEVNGVALQ 67 (97)
T ss_dssp SEEEEEEC---TTSHHHHHTCCTTCEEEEETTEECT
T ss_pred CEEEEEEC---CCChHHHcCCCCCCEEEEECCEECC
Confidence 36665554 45554433 9999999999998763
No 50
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A
Probab=52.30 E-value=3.4 Score=33.56 Aligned_cols=31 Identities=16% Similarity=0.323 Sum_probs=22.6
Q ss_pred eEEEEEEeecccCCCCCC-CCCCcEEEccCCcEEE
Q 007947 399 VEVHFIVAACENMISGTG-MRPGDIITAANGKTIE 432 (583)
Q Consensus 399 vnV~~ii~~~ENm~sg~A-~rPGDVvts~~GkTVE 432 (583)
+-|..+ .+|.|.-.| .+|||+|.+.||+.|+
T Consensus 29 ~~V~~V---~~~spA~~aGL~~GD~I~~ing~~v~ 60 (91)
T 1g9o_A 29 QYIRLV---EPGSPAEKAGLLAGDRLVEVNGENVE 60 (91)
T ss_dssp EEEEEE---CTTSHHHHTTCCTTCEEEEETTEECT
T ss_pred EEEEEE---CCCCHHHHCCCCCCCEEEEECCEECC
Confidence 555555 356555444 9999999999998773
No 51
>1spv_A Putative polyprotein/phosphatase; structural genomoics, alpha/beta monomeric protein, structural genomics, PSI, protein structure initiative; HET: MES; 2.00A {Escherichia coli} SCOP: c.50.1.2
Probab=52.23 E-value=1.5e+02 Score=27.57 Aligned_cols=110 Identities=13% Similarity=0.096 Sum_probs=62.4
Q ss_pred eEEEeecCCcccccccEEEEEEecCCCCCCCCcccchhHHHHHHHHhhHHHHHHHhc----CCCCCCCCcEEEEecCCCC
Q 007947 79 ISFAAKEVDVVEWKGDILAVGVTEKDMGKDDNSKFQNSILKKLDAQLGGLLSEASSE----EDFTGKAGQSTVIRLPGIG 154 (583)
Q Consensus 79 ~~~~~~~~~~~~~~~D~LVVgV~e~~~~~~~~s~~~~~~~~~ld~~l~g~Ls~~~~~----~~f~Gk~Ge~~~l~~~~~~ 154 (583)
+.+.+...|..+++.|++|=+..+..... ......+-+..+..|.+..+. .+ .=+.|+..+......+
T Consensus 3 ~~i~i~~GDIt~~~~DaIVNaaN~~l~~g-------gGv~~aI~~aaG~~l~~e~~~~~~~~g-~~~~G~a~iT~~~~L~ 74 (184)
T 1spv_A 3 TRIHVVQGDITKLAVDVIVNAANPSLMGG-------GGVDGAIHRAAGPALLDACLKVRQQQG-DCPTGHAVITLAGDLP 74 (184)
T ss_dssp CCEEEEESCGGGCCCSEEEEECCTTCSCC-------SHHHHHHHHHHCHHHHHHHHHHHHHHC-SCCTTCEEEECCTTSS
T ss_pred CeEEEEeCcCCcCCCCEEEECCCCCCCCC-------chHHHHHHHHhCHHHHHHHHHHHHhcC-CCCCCCEEEeeCCCCC
Confidence 34555778888999999998876654221 223334444443333332221 11 2267887654433456
Q ss_pred ccEEEEEecCCCC-----CChHHHHHHHHHHHHHHHHcccCcEEEEec
Q 007947 155 SKRVGLIGLGQSA-----SRAGDFRSLGESVAAAAKAAQASNVAVVLA 197 (583)
Q Consensus 155 ~~rvllVGLGk~~-----~~~~~~r~~~~a~a~~~k~~~~~~v~i~l~ 197 (583)
.+.|+=+ +|+.- ...+.+++.-....+.+.+.+.+++++-.-
T Consensus 75 ~k~VIH~-vgP~~~~~~~~~~~~L~~~y~~~L~~a~~~~~~SIAfP~I 121 (184)
T 1spv_A 75 AKAVVHT-VGPVWRGGEQNEDQLLQDAYLNSLRLVAANSYTSVAFPAI 121 (184)
T ss_dssp SSEEEEE-CCCCCSSSSSSHHHHHHHHHHHHHHHHHHTTCSEEEECCT
T ss_pred CCEEEEE-cCCcccCCCcchHHHHHHHHHHHHHHHHHhCCceEEeccc
Confidence 6766544 34421 124556666667777777888888776443
No 52
>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=51.94 E-value=3.6 Score=35.78 Aligned_cols=32 Identities=31% Similarity=0.475 Sum_probs=23.9
Q ss_pred ceEEEEEEeecccCCCCCC--CCCCcEEEccCCcEEE
Q 007947 398 GVEVHFIVAACENMISGTG--MRPGDIITAANGKTIE 432 (583)
Q Consensus 398 ~vnV~~ii~~~ENm~sg~A--~rPGDVvts~~GkTVE 432 (583)
++-|..+ .+|.|...+ ++|||+|++.||+.|+
T Consensus 49 gv~V~~V---~~~spA~~aG~l~~GD~I~~ing~~v~ 82 (124)
T 1wh1_A 49 GIYISEI---DPNSIAAKDGRIREGDRIIQINGIEVQ 82 (124)
T ss_dssp CEEEEEE---CSSSHHHHTCCCCTTCEEEEESSCBCC
T ss_pred CEEEEEE---CCCCHHHHcCCCCCCCEEEEECCEECC
Confidence 4666555 456555555 9999999999999875
No 53
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A
Probab=51.81 E-value=3.3 Score=33.61 Aligned_cols=31 Identities=19% Similarity=0.363 Sum_probs=22.8
Q ss_pred eEEEEEEeecccCCCCCC--CCCCcEEEccCCcEEE
Q 007947 399 VEVHFIVAACENMISGTG--MRPGDIITAANGKTIE 432 (583)
Q Consensus 399 vnV~~ii~~~ENm~sg~A--~rPGDVvts~~GkTVE 432 (583)
+-|..+ .+|.|...| ++|||+|.+.||+.|+
T Consensus 32 ~~V~~V---~~~spA~~aggl~~GD~I~~ing~~v~ 64 (90)
T 1qav_A 32 ILISKI---FKGLAADQTEALFVGDAILSVNGEDLS 64 (90)
T ss_dssp EEEEEE---CTTSHHHHTTCCCTTEEEEEETTEECT
T ss_pred EEEEEE---CCCCHHHhcCCCCCCCEEEEECCEECC
Confidence 444444 466666654 9999999999998874
No 54
>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A
Probab=51.45 E-value=3.1 Score=34.66 Aligned_cols=26 Identities=23% Similarity=0.397 Sum_probs=20.3
Q ss_pred ecccCCCCC-CCCCCcEEEccCCcEEE
Q 007947 407 ACENMISGT-GMRPGDIITAANGKTIE 432 (583)
Q Consensus 407 ~~ENm~sg~-A~rPGDVvts~~GkTVE 432 (583)
..+|.|... .++|||+|++.||+.|.
T Consensus 9 V~~~spA~~aGl~~GD~I~~ing~~v~ 35 (95)
T 3id1_A 9 IAANSIAAEAQIAPGTELKAVDGIETP 35 (95)
T ss_dssp ECTTSHHHHTTCCTTCEEEEETTEECS
T ss_pred eCCCCHHHHcCCCCCCEEEEECCEECC
Confidence 356666554 49999999999999874
No 55
>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A
Probab=51.16 E-value=8.2 Score=32.71 Aligned_cols=31 Identities=19% Similarity=0.291 Sum_probs=23.4
Q ss_pred eEEEEEEeecccCCCCCC-CCCCcEEEccCCcEEE
Q 007947 399 VEVHFIVAACENMISGTG-MRPGDIITAANGKTIE 432 (583)
Q Consensus 399 vnV~~ii~~~ENm~sg~A-~rPGDVvts~~GkTVE 432 (583)
+-|..+ .+|.|...+ ++|||+|.+.||+.|+
T Consensus 43 v~V~~V---~~~s~A~~aGL~~GD~Il~vng~~v~ 74 (114)
T 1x5n_A 43 IFISHV---KPGSLSAEVGLEIGDQIVEVNGVDFS 74 (114)
T ss_dssp EEEEEE---CTTSTTTTTTCCTTCEEEEETTEETT
T ss_pred EEEEEE---CCCCHHHHcCCCCCCEEEEECCEECC
Confidence 555555 356666554 9999999999999874
No 56
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A
Probab=51.00 E-value=8.6 Score=32.11 Aligned_cols=31 Identities=10% Similarity=0.216 Sum_probs=23.3
Q ss_pred eEEEEEEeecccCCCCCCCCCCcEEEccCCcEEE
Q 007947 399 VEVHFIVAACENMISGTGMRPGDIITAANGKTIE 432 (583)
Q Consensus 399 vnV~~ii~~~ENm~sg~A~rPGDVvts~~GkTVE 432 (583)
+-|..+ .+|.|....++|||+|.+.||+.|+
T Consensus 41 v~V~~V---~~~spA~agl~~GD~I~~vng~~v~ 71 (107)
T 2h2b_A 41 IVISDV---LKGGPAEGQLQENDRVAMVNGVSMD 71 (107)
T ss_dssp EEEEEE---CTTSTTBTTBCTTCEEEEETTEECT
T ss_pred EEEEEE---CCCCchhhCCCCCCEEEEECCEECC
Confidence 555554 4566666569999999999998763
No 57
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}
Probab=50.84 E-value=8.9 Score=31.89 Aligned_cols=46 Identities=22% Similarity=0.174 Sum_probs=30.9
Q ss_pred EEEeecccCCCCC-C-CCCCcEEEccCCcEEEeecCCccCceehhhhhhHHHhcCC
Q 007947 403 FIVAACENMISGT-G-MRPGDIITAANGKTIEVNNTDAEGRLTLADALIYACNQGV 456 (583)
Q Consensus 403 ~ii~~~ENm~sg~-A-~rPGDVvts~~GkTVEV~NTDAEGRLvLADaL~Ya~~~~p 456 (583)
.|.-..+|.|... + .++||+|.+.||+.|+=. -..|+..+-++.++
T Consensus 40 ~V~~V~~~spA~~~ggl~~GD~I~~Ing~~v~~~--------~~~~~~~~l~~~~~ 87 (101)
T 2yt7_A 40 VIANLLHGGPAERSGALSIGDRLTAINGTSLVGL--------PLAACQAAVRETKS 87 (101)
T ss_dssp EEEEECTTSTTGGGSSCCTTCEEEEESSCBCTTS--------CHHHHHHHHHHTTT
T ss_pred EEEEECCCCHHHHcCCCCCCCEEEEECCEECCCC--------CHHHHHHHHHhCCC
Confidence 3445568888887 5 999999999999876311 24466555555433
No 58
>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Probab=49.98 E-value=4.6 Score=33.28 Aligned_cols=31 Identities=29% Similarity=0.424 Sum_probs=22.2
Q ss_pred eEEEEEEeecccCCCCCC-CCCCcEEEccCCcEEE
Q 007947 399 VEVHFIVAACENMISGTG-MRPGDIITAANGKTIE 432 (583)
Q Consensus 399 vnV~~ii~~~ENm~sg~A-~rPGDVvts~~GkTVE 432 (583)
+-|..+ .+|.|...| ++|||+|.+.||+.|+
T Consensus 39 ~~V~~V---~~~spA~~aGL~~GD~I~~ing~~v~ 70 (96)
T 2ego_A 39 TFVARV---HESSPAQLAGLTPGDTIASVNGLNVE 70 (96)
T ss_dssp EEEEEE---CTTCHHHHTTCCTTCEEEEETTEECT
T ss_pred eEEEEE---CCCChHHHcCCCCCCEEEEECCEECC
Confidence 555544 455555444 9999999999998763
No 59
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=49.72 E-value=8.1 Score=33.05 Aligned_cols=27 Identities=19% Similarity=0.308 Sum_probs=22.5
Q ss_pred eecccCCCCCC---CCCCcEEEccCCcEEE
Q 007947 406 AACENMISGTG---MRPGDIITAANGKTIE 432 (583)
Q Consensus 406 ~~~ENm~sg~A---~rPGDVvts~~GkTVE 432 (583)
-..+|.|...| +++||+|.+.||+.|+
T Consensus 47 ~V~~~spA~~a~gGL~~GD~Il~ing~~v~ 76 (119)
T 2cs5_A 47 RVAPGTPADLCVPRLNEGDQVVLINGRDIA 76 (119)
T ss_dssp EECSSSTTTSSSSCCCTTCEEEEETTBCTT
T ss_pred EECCCCHHHHhhcCCCCCCEEEEECCEECC
Confidence 44678888875 9999999999998774
No 60
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=49.67 E-value=7.1 Score=32.37 Aligned_cols=31 Identities=26% Similarity=0.451 Sum_probs=24.0
Q ss_pred ceEEEEEEeecccCCCCCCCCCCcEEEccCCcEEE
Q 007947 398 GVEVHFIVAACENMISGTGMRPGDIITAANGKTIE 432 (583)
Q Consensus 398 ~vnV~~ii~~~ENm~sg~A~rPGDVvts~~GkTVE 432 (583)
++.|..+++- +....++|||+|.+-||+.|+
T Consensus 33 Gv~V~~v~~~----a~~aGL~~GD~I~~vng~~v~ 63 (96)
T 1ujv_A 33 GQRVKQILDI----QGCPGLCEGDLIVEINQQNVQ 63 (96)
T ss_dssp EEEEEEESCG----GGSTTCCSSCEEEEETTEECS
T ss_pred CEEEEEEecc----cccCCCCCCCEEEEECCEECC
Confidence 3677777763 345779999999999998774
No 61
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens}
Probab=49.10 E-value=4.1 Score=33.00 Aligned_cols=25 Identities=20% Similarity=0.520 Sum_probs=18.8
Q ss_pred cccCCCCCC--CCCCcEEEccCCcEEE
Q 007947 408 CENMISGTG--MRPGDIITAANGKTIE 432 (583)
Q Consensus 408 ~ENm~sg~A--~rPGDVvts~~GkTVE 432 (583)
.+|.|...+ ++|||+|.+-||+.|+
T Consensus 31 ~~~s~A~~aG~l~~GD~I~~ing~~v~ 57 (92)
T 3cyy_A 31 SQDSLAARDGNIQEGDVVLKINGTVTE 57 (92)
T ss_dssp CTTCHHHHSCCCCTTCEEEEETTEECT
T ss_pred CCCChHHhcCCCCCCCEEEEECCEECC
Confidence 345554433 9999999999998874
No 62
>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein BIND; 1.70A {Homo sapiens}
Probab=48.82 E-value=3.7 Score=34.87 Aligned_cols=32 Identities=34% Similarity=0.569 Sum_probs=22.8
Q ss_pred ceEEEEEEeecccCCCCC-CCCCCcEEEccCCcEEE
Q 007947 398 GVEVHFIVAACENMISGT-GMRPGDIITAANGKTIE 432 (583)
Q Consensus 398 ~vnV~~ii~~~ENm~sg~-A~rPGDVvts~~GkTVE 432 (583)
++-|..+ .+|.|... .++|||+|++.||+.|+
T Consensus 36 gv~V~~V---~~~spA~~aGl~~GD~I~~ing~~v~ 68 (112)
T 2p3w_A 36 GIYVQEV---APNSPSQRGGIQDGDIIVKVNGRPLV 68 (112)
T ss_dssp SEEEEEE---CTTSHHHHHTCCTTCEEEEETTEECC
T ss_pred CeEEEEE---CCCChHHHCCCCCCCEEEEECCEECC
Confidence 3555444 45665543 49999999999998874
No 63
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=48.82 E-value=3.5 Score=34.28 Aligned_cols=31 Identities=29% Similarity=0.339 Sum_probs=22.3
Q ss_pred eEEEEEEeecccCCCCCC-CCCCcEEEccCCcEEE
Q 007947 399 VEVHFIVAACENMISGTG-MRPGDIITAANGKTIE 432 (583)
Q Consensus 399 vnV~~ii~~~ENm~sg~A-~rPGDVvts~~GkTVE 432 (583)
+-|..+ .+|.|...+ ++|||+|.+.||+.|+
T Consensus 38 v~V~~V---~~~spA~~aGL~~GD~I~~ing~~v~ 69 (100)
T 2eeh_A 38 IFVSKV---EEGSSAERAGLCVGDKITEVNGLSLE 69 (100)
T ss_dssp EEEEEE---CTTSHHHHHTCCSSCEEEEETTEECS
T ss_pred EEEEEE---CCCCHHHHcCCCCCCEEEEECCEECC
Confidence 666555 345554444 9999999999998764
No 64
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens}
Probab=48.50 E-value=3.7 Score=33.19 Aligned_cols=31 Identities=13% Similarity=0.289 Sum_probs=20.9
Q ss_pred eEEEEEEeecccCCCCC-CCCCCcEEEccCCcEEE
Q 007947 399 VEVHFIVAACENMISGT-GMRPGDIITAANGKTIE 432 (583)
Q Consensus 399 vnV~~ii~~~ENm~sg~-A~rPGDVvts~~GkTVE 432 (583)
+-|..+. +|.|... .++|||+|.+.||+.|+
T Consensus 29 v~V~~V~---~~spA~~aGl~~GD~I~~ing~~v~ 60 (89)
T 2q3g_A 29 LSISRLT---PGGKAAQAGVAVGDWVLSIDGENAG 60 (89)
T ss_dssp EEEEEEC---TTSHHHHTTCCTTCEEEEETTEEGG
T ss_pred EEEEEEC---CCCHHHHcCCCCCCEEEEECCEECC
Confidence 4444443 4444332 39999999999998774
No 65
>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5
Probab=48.48 E-value=5.4 Score=32.39 Aligned_cols=25 Identities=24% Similarity=0.407 Sum_probs=18.8
Q ss_pred cccCCC----CCCCCCCcEEEccCCcEEE
Q 007947 408 CENMIS----GTGMRPGDIITAANGKTIE 432 (583)
Q Consensus 408 ~ENm~s----g~A~rPGDVvts~~GkTVE 432 (583)
.++.|+ -..++|||+|++.||+.|.
T Consensus 24 ~~~~~~s~A~~aGl~~GD~I~~ing~~v~ 52 (87)
T 2i6v_A 24 SPGKDPVLFESIGLQDGDMAVALNGLDLT 52 (87)
T ss_dssp EECSCHHHHHHTTCCTTCEEEEETTEETT
T ss_pred EeCCCCCHHHHCCCCCCCEEEEECCEECC
Confidence 455554 2359999999999999773
No 66
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=48.16 E-value=2.4 Score=37.07 Aligned_cols=25 Identities=24% Similarity=0.236 Sum_probs=18.5
Q ss_pred cccCCCCCC-CCCCcEEEccCCcEEE
Q 007947 408 CENMISGTG-MRPGDIITAANGKTIE 432 (583)
Q Consensus 408 ~ENm~sg~A-~rPGDVvts~~GkTVE 432 (583)
.+|.|...+ ++|||+|.+.||+.|+
T Consensus 69 ~~~spA~~aGL~~GD~I~~ing~~v~ 94 (126)
T 2yuy_A 69 KEGGPAFEAGLCTGDRIIKVNGESVI 94 (126)
T ss_dssp CSSSHHHHHTCCSSCCCCEETTEECS
T ss_pred CCCChHHHcCCCCCCEEEEECCEECC
Confidence 345444333 9999999999998764
No 67
>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR {Streptococcus pneumoniae}
Probab=47.74 E-value=8.9 Score=33.91 Aligned_cols=27 Identities=26% Similarity=0.316 Sum_probs=21.9
Q ss_pred eecccCCCCCCCCCCcEEEccCCcEEE
Q 007947 406 AACENMISGTGMRPGDIITAANGKTIE 432 (583)
Q Consensus 406 ~~~ENm~sg~A~rPGDVvts~~GkTVE 432 (583)
...+|.|....++|||+|++.||+.|.
T Consensus 63 ~V~~~spA~aGL~~GD~I~~inG~~v~ 89 (134)
T 2l97_A 63 SVQSNMPANGHLEKYDVITKVDDKEIA 89 (134)
T ss_dssp ECSTTSGGGTTSCSSCEEEEETTEECC
T ss_pred EECCCCchHHCCCCCCEEEEECCEEcC
Confidence 345777766569999999999999874
No 68
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Probab=47.40 E-value=4.3 Score=33.38 Aligned_cols=27 Identities=22% Similarity=0.324 Sum_probs=20.3
Q ss_pred eecccCCCCCC--CCCCcEEEccCCcEEE
Q 007947 406 AACENMISGTG--MRPGDIITAANGKTIE 432 (583)
Q Consensus 406 ~~~ENm~sg~A--~rPGDVvts~~GkTVE 432 (583)
-..+|.|...+ ++|||+|.+.||+.|.
T Consensus 43 ~V~~~spA~~aG~L~~GD~I~~ing~~v~ 71 (98)
T 1ihj_A 43 GIVPDSPAHLCGRLKVGDRILSLNGKDVR 71 (98)
T ss_dssp EECTTSHHHHHCSCCTTCEEEEETTEECT
T ss_pred EECCCCHHHHcCCCCCCCEEEEECCEECC
Confidence 34556665544 9999999999998773
No 69
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=47.37 E-value=3.5 Score=33.87 Aligned_cols=25 Identities=44% Similarity=0.686 Sum_probs=19.3
Q ss_pred cccCCCCCC-CCCCcEEEccCCcEEE
Q 007947 408 CENMISGTG-MRPGDIITAANGKTIE 432 (583)
Q Consensus 408 ~ENm~sg~A-~rPGDVvts~~GkTVE 432 (583)
.+|.|...+ ++|||+|.+.||+.|+
T Consensus 38 ~~~spA~~aGL~~GD~I~~ing~~v~ 63 (94)
T 1vb7_A 38 TERGKAEAADLRPGDIIVAINGQSAE 63 (94)
T ss_dssp CTTSSHHHHTCCTTCEEEEETTEECT
T ss_pred CCCCHHHHCCCCCCCEEEEECCEECC
Confidence 456555444 9999999999998773
No 70
>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5
Probab=46.54 E-value=5.9 Score=33.38 Aligned_cols=25 Identities=24% Similarity=0.391 Sum_probs=19.2
Q ss_pred cccCCC---C-CCCCCCcEEEccCCcEEE
Q 007947 408 CENMIS---G-TGMRPGDIITAANGKTIE 432 (583)
Q Consensus 408 ~ENm~s---g-~A~rPGDVvts~~GkTVE 432 (583)
.++.|+ . ..++|||+|++.||+.|.
T Consensus 42 ~~~~pas~A~~aGl~~GDvI~~ing~~v~ 70 (105)
T 2i4s_A 42 SPGKDPVLFESIGLQDGDMAVALNGLDLT 70 (105)
T ss_dssp EECSCTHHHHHHTCCTTCEEEEETTEETT
T ss_pred ecCCCCCHHHHcCCCCCCEEEEECCEECC
Confidence 556655 2 359999999999999773
No 71
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Probab=46.23 E-value=3.8 Score=33.20 Aligned_cols=30 Identities=13% Similarity=0.241 Sum_probs=21.0
Q ss_pred eEEEEEEeecccCCCCCC-CCCCcEEEccCCcEE
Q 007947 399 VEVHFIVAACENMISGTG-MRPGDIITAANGKTI 431 (583)
Q Consensus 399 vnV~~ii~~~ENm~sg~A-~rPGDVvts~~GkTV 431 (583)
+-|..+. +|.|...+ ++|||+|.+.||+.|
T Consensus 30 v~V~~V~---~~spA~~aGl~~GD~I~~ing~~v 60 (90)
T 2he4_A 30 QYIRSVD---PGSPAARSGLRAQDRLIEVNGQNV 60 (90)
T ss_dssp EEEEEEC---TTSHHHHHTCCTTCEEEEETTEEC
T ss_pred EEEEEEC---CCChHHHCCCCCCCEEEEECCEEC
Confidence 5555553 34444333 999999999999876
No 72
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A
Probab=46.10 E-value=6.1 Score=32.63 Aligned_cols=25 Identities=32% Similarity=0.518 Sum_probs=18.9
Q ss_pred cccCCCCCC--CCCCcEEEccCCcEEE
Q 007947 408 CENMISGTG--MRPGDIITAANGKTIE 432 (583)
Q Consensus 408 ~ENm~sg~A--~rPGDVvts~~GkTVE 432 (583)
.+|.|...+ .+|||+|.+-||+.|.
T Consensus 39 ~~~spA~~aG~L~~GD~I~~Ing~~v~ 65 (96)
T 2qkv_A 39 IQGQYPEIDSKLQRGDIITKFNGDALE 65 (96)
T ss_dssp CTTSCHHHHHHCCTTCEEEEETTEECT
T ss_pred CCCChHHhcCCCCCCCEEEEECCEECC
Confidence 455555444 8999999999998764
No 73
>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A
Probab=46.07 E-value=8.5 Score=31.97 Aligned_cols=27 Identities=26% Similarity=0.290 Sum_probs=21.4
Q ss_pred eecccCCCCCCCCCCcEEEccCCcEEE
Q 007947 406 AACENMISGTGMRPGDIITAANGKTIE 432 (583)
Q Consensus 406 ~~~ENm~sg~A~rPGDVvts~~GkTVE 432 (583)
-..+|.|....++|||+|.+-||+.|+
T Consensus 49 ~V~~~spA~~gL~~GD~I~~vng~~v~ 75 (103)
T 1n7t_A 49 RVQPEGPASKLLQPGDKIIQANGYSFI 75 (103)
T ss_dssp CBSSSSTTSSSCCTTCEEEEETTEECS
T ss_pred EECCCCchHHCCCCCCEEEEECCEECC
Confidence 345677766689999999999998764
No 74
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=45.42 E-value=4 Score=34.45 Aligned_cols=32 Identities=22% Similarity=0.387 Sum_probs=22.7
Q ss_pred ceEEEEEEeecccCCCCCC-CCCCcEEEccCCcEEE
Q 007947 398 GVEVHFIVAACENMISGTG-MRPGDIITAANGKTIE 432 (583)
Q Consensus 398 ~vnV~~ii~~~ENm~sg~A-~rPGDVvts~~GkTVE 432 (583)
++-|..+. +|.|...| ++|||+|.+.||+.|+
T Consensus 47 g~~V~~V~---~~spA~~aGL~~GD~I~~ing~~v~ 79 (110)
T 1x5q_A 47 GIFISRVS---EEGPAARAGVRVGDKLLEVNGVALQ 79 (110)
T ss_dssp SEEEEEEC---TTSHHHHHTCCTTCEEEEETTEECT
T ss_pred CEEEEEEC---CCCHHHHcCCCCCCEEEEECCEECC
Confidence 36666654 45554443 9999999999998763
No 75
>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=45.37 E-value=12 Score=31.75 Aligned_cols=31 Identities=19% Similarity=0.413 Sum_probs=23.4
Q ss_pred eEEEEEEeecccCCCCCC--CCCCcEEEccCCcEEE
Q 007947 399 VEVHFIVAACENMISGTG--MRPGDIITAANGKTIE 432 (583)
Q Consensus 399 vnV~~ii~~~ENm~sg~A--~rPGDVvts~~GkTVE 432 (583)
+-|..+ .+|.|...+ +++||+|.+.||+.|+
T Consensus 52 v~V~~V---~~~spA~~aG~L~~GD~Il~vng~~v~ 84 (117)
T 2ehr_A 52 IFIKQV---LEDSPAGKTNALKTGDKILEVSGVDLQ 84 (117)
T ss_dssp EEEEEE---CSSSTTTSSCSCCTTCEEEEESSCBCT
T ss_pred EEEEEe---CCCChHHHcCCCCCCCEEEEECCEECC
Confidence 655555 457776664 8999999999998764
No 76
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens}
Probab=45.10 E-value=4.3 Score=33.30 Aligned_cols=25 Identities=16% Similarity=0.304 Sum_probs=18.8
Q ss_pred cccCCCCCC--CCCCcEEEccCCcEEE
Q 007947 408 CENMISGTG--MRPGDIITAANGKTIE 432 (583)
Q Consensus 408 ~ENm~sg~A--~rPGDVvts~~GkTVE 432 (583)
.+|.|...+ ++|||+|.+.||+.|+
T Consensus 40 ~~~spA~~aG~l~~GD~I~~ing~~v~ 66 (97)
T 2jil_A 40 RPGGPADREGTIKPGDRLLSVDGIRLL 66 (97)
T ss_dssp CTTSHHHHHCCCCTTCEEEEETTEECS
T ss_pred CCCCHHHHCCCCCCCCEEEEECCEECC
Confidence 455555443 8999999999998763
No 77
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens}
Probab=44.85 E-value=4.2 Score=33.34 Aligned_cols=31 Identities=19% Similarity=0.323 Sum_probs=21.6
Q ss_pred eEEEEEEeecccCCCCCC--CCCCcEEEccCCcEEE
Q 007947 399 VEVHFIVAACENMISGTG--MRPGDIITAANGKTIE 432 (583)
Q Consensus 399 vnV~~ii~~~ENm~sg~A--~rPGDVvts~~GkTVE 432 (583)
+-|..+. +|.|...+ .+|||+|.+.||+.|+
T Consensus 31 v~V~~V~---~~spA~~aG~L~~GD~I~~vng~~v~ 63 (95)
T 2vwr_A 31 VFILDLL---EGGLAAQDGRLSSNDRVLAINGHDLK 63 (95)
T ss_dssp EEEEEEC---TTSHHHHHCCCCTTCEEEEETTEECT
T ss_pred EEEEEeC---CCChHHHCCCCCCCCEEEEECCEECC
Confidence 5555543 45554333 8999999999998764
No 78
>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=44.84 E-value=3.8 Score=34.09 Aligned_cols=31 Identities=23% Similarity=0.393 Sum_probs=22.3
Q ss_pred eEEEEEEeecccCCCCCC-CCCCcEEEccCCcEEE
Q 007947 399 VEVHFIVAACENMISGTG-MRPGDIITAANGKTIE 432 (583)
Q Consensus 399 vnV~~ii~~~ENm~sg~A-~rPGDVvts~~GkTVE 432 (583)
+-|..+. +|.|...| ++|||+|.+.||+.|+
T Consensus 37 ~~V~~V~---~~spA~~aGL~~GD~I~~ing~~v~ 68 (101)
T 1uez_A 37 IYVSLVE---PGSLAEKEGLRVGDQILRVNDKSLA 68 (101)
T ss_dssp EEEEEEC---TTSHHHHHTCCSSCCEEEETTEECS
T ss_pred EEEEEEC---CCCHHHHcCCCCCCEEEEECCEECC
Confidence 6665553 45554443 9999999999998764
No 79
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1
Probab=44.65 E-value=5.8 Score=33.13 Aligned_cols=26 Identities=27% Similarity=0.411 Sum_probs=19.7
Q ss_pred ecccCCCCC-CCCCCcEEEccCCcEEE
Q 007947 407 ACENMISGT-GMRPGDIITAANGKTIE 432 (583)
Q Consensus 407 ~~ENm~sg~-A~rPGDVvts~~GkTVE 432 (583)
..+|.|... .++|||+|.+.||+.|+
T Consensus 36 V~~~spA~~aGL~~GD~I~~ing~~v~ 62 (103)
T 1v5l_A 36 ITPGSKAAAANLCPGDVILAIDGFGTE 62 (103)
T ss_dssp BCTTSTTGGGTCCTTCBEEEETTEECS
T ss_pred ECCCCHHHHcCCCCCCEEEEECCEECC
Confidence 345666553 38999999999998763
No 80
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Probab=43.92 E-value=4.4 Score=33.65 Aligned_cols=31 Identities=23% Similarity=0.550 Sum_probs=21.5
Q ss_pred eEEEEEEeecccCCCCCC--CCCCcEEEccCCcEEE
Q 007947 399 VEVHFIVAACENMISGTG--MRPGDIITAANGKTIE 432 (583)
Q Consensus 399 vnV~~ii~~~ENm~sg~A--~rPGDVvts~~GkTVE 432 (583)
+-|..+ .+|.|...| ++|||+|.+.||+.|+
T Consensus 41 ~~V~~V---~~~spA~~aG~l~~GD~I~~ing~~v~ 73 (103)
T 2fcf_A 41 IFIKHV---LEDSPAGKNGTLKPGDRIVEVDGMDLR 73 (103)
T ss_dssp EEEEEE---CSSSHHHHHCCCCTTCEEEEETTEECT
T ss_pred EEEEEe---CCCCcHHHcCCCCCCCEEEEECCEECC
Confidence 555544 345554333 9999999999998773
No 81
>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster}
Probab=43.92 E-value=5.5 Score=33.89 Aligned_cols=26 Identities=31% Similarity=0.483 Sum_probs=19.1
Q ss_pred ecccCCCCCC--CCCCcEEEccCCcEEE
Q 007947 407 ACENMISGTG--MRPGDIITAANGKTIE 432 (583)
Q Consensus 407 ~~ENm~sg~A--~rPGDVvts~~GkTVE 432 (583)
..+|.|...| .+|||+|.+-||+.|+
T Consensus 32 V~~gspA~~aG~L~~GD~Il~Ing~~v~ 59 (106)
T 2la8_A 32 LIQGQYPEIDSKLQRGDIITKFNGDALE 59 (106)
T ss_dssp CCTTSCHHHHTTCCTTCEEEEESSCBCS
T ss_pred ECCCCHHHHCCCCCCCCEEEEECCEECC
Confidence 3445554443 8999999999999774
No 82
>3ife_A Peptidase T; metallopeptidase, aminopeptidase, hydro metal-binding, metalloprotease, protease; HET: SUC; 1.55A {Bacillus anthracis}
Probab=43.82 E-value=2.5e+02 Score=28.98 Aligned_cols=136 Identities=10% Similarity=-0.007 Sum_probs=72.2
Q ss_pred HHHHHHHHhhcCCCCCCC----------hHHHHHHHHHHhhhcCCceE-EEEeCHHHHHHcCCCchhhhcccCC---CCC
Q 007947 264 SAVIFGRELVNSPANVLT----------PAVLAEEASKVASMYSDVLS-ATILDIEKCKELKMGSYLGVAAASA---NLP 329 (583)
Q Consensus 264 ~~~~~aRdL~n~P~N~lt----------P~~~A~~a~~~~~~~~~~~~-v~V~d~~~l~~~gmg~llaV~~GS~---~pP 329 (583)
+-+.+-++|++.|+-.-. -..+++...+.+++.+ ++ |++ |+ .+-+++.=.|+. .|+
T Consensus 28 ~~~~~l~~lv~i~s~s~~~~~~~~~~~~e~~~~~~l~~~l~~~G--~~~~~~-d~-------~~nv~a~~~g~~~~~~~~ 97 (434)
T 3ife_A 28 ELIERFTRYVKIDTQSNEDSHTVPTTPGQIEFGKLLVEELKEVG--LTEVTM-DD-------NGYVMATLPANTDKDVPV 97 (434)
T ss_dssp HHHHHHHHHHTSCCBCCTTCCSSSSSHHHHHHHHHHHHHHHHHT--CEEEEE-CT-------TSCEEEEECCBSSSCCCC
T ss_pred HHHHHHHhhEEeeccCCCccCCCCCCHHHHHHHHHHHHHHHHcC--CceEEE-CC-------CcEEEEEeCCCCCCCCCe
Confidence 446778889988753321 1577888888888885 86 776 32 355666544543 344
Q ss_pred eEEEEEEc--CC-CCCCCceEEEE---ecceeecCC-CCCCCCCCcccccccc--------------ccc-chHHHHHHH
Q 007947 330 HFIHLCYK--PP-GGSAKIKLALV---GKGLTFDSG-GYNIKTGPGCLIENMK--------------YDM-GGAAAVLGA 387 (583)
Q Consensus 330 rli~l~Y~--g~-~~~~~~~i~LV---GKGiTFDsG-G~slKp~~~~~M~~MK--------------~DM-~GAAaVlga 387 (583)
.++.-+|. |. .+...+|...- |+-|.++.+ |.-+.|..-.....+. .|| +|.|+.+++
T Consensus 98 v~l~~H~DtVp~~~~~~~~p~~~~~~dg~~i~l~~~~~~~~~~~~~~~~~~~~g~~~i~grG~t~~~~D~K~gva~~l~a 177 (434)
T 3ife_A 98 IGFLAHLDTATDFTGKNVKPQIHENFDGNAITLNEELNIVLTPEQFPELPSYKGHTIITTDGTTLLGADDKAGLTEIMVA 177 (434)
T ss_dssp EEEEEECCBCTTSCCSSCCCEEETTCCSSCEEEETTTTEEECTTTCTTGGGGTTSCEEECCSSSCCCHHHHHHHHHHHHH
T ss_pred EEEEEEcccCCCCCCCCCccEEeecCCCCceecccccccccChhhChhHHhhcCCcEEECCCccchhhhhHHHHHHHHHH
Confidence 44444443 11 01112233221 333333322 1222232100011111 455 788999999
Q ss_pred HHHHHhcC--CCceEEEEEEeeccc
Q 007947 388 AKAIGQIK--PPGVEVHFIVAACEN 410 (583)
Q Consensus 388 ~~aia~lk--lp~vnV~~ii~~~EN 410 (583)
++++.+.+ ++ .+|..+.-..|=
T Consensus 178 ~~~L~~~~~~~~-~~i~~if~~~EE 201 (434)
T 3ife_A 178 MNYLIHNPQIKH-GKIRVAFTPDEE 201 (434)
T ss_dssp HHHHHTCTTSCB-CCEEEEEESCGG
T ss_pred HHHHHhCCCCCC-CCEEEEEECCcc
Confidence 99999874 33 677776655553
No 83
>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=43.23 E-value=3.2 Score=33.73 Aligned_cols=31 Identities=16% Similarity=0.420 Sum_probs=22.2
Q ss_pred eEEEEEEeecccCCCCCC--CCCCcEEEccCCcEEE
Q 007947 399 VEVHFIVAACENMISGTG--MRPGDIITAANGKTIE 432 (583)
Q Consensus 399 vnV~~ii~~~ENm~sg~A--~rPGDVvts~~GkTVE 432 (583)
+-|..+. +|.|...+ ++|||+|.+.||+.|+
T Consensus 32 ~~V~~V~---~~spA~~aGgl~~GD~I~~vng~~v~ 64 (93)
T 2dkr_A 32 IYISRVI---PGGVADRHGGLKRGDQLLSVNGVSVE 64 (93)
T ss_dssp CEEEEEC---TTSHHHHHCCCCTTCBEEEETTEECT
T ss_pred EEEEEEC---CCCHHHHcCCCCCCCEEEEECCEECC
Confidence 5555543 45555543 9999999999998774
No 84
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=42.96 E-value=11 Score=31.27 Aligned_cols=31 Identities=13% Similarity=0.276 Sum_probs=22.2
Q ss_pred eEEEEEEeecccCCCCCC--CCCCcEEEccCCcEEE
Q 007947 399 VEVHFIVAACENMISGTG--MRPGDIITAANGKTIE 432 (583)
Q Consensus 399 vnV~~ii~~~ENm~sg~A--~rPGDVvts~~GkTVE 432 (583)
+-|..+ .+|.|...+ ++|||+|.+.||+.|+
T Consensus 36 ~~V~~V---~~~spA~~aG~L~~GD~Il~ing~~v~ 68 (103)
T 1uep_A 36 ILIGAV---IAMGSADRDGRLHPGDELVYVDGIPVA 68 (103)
T ss_dssp CBEEEE---CTTSTTGGGTCCCTTCEEEEETTEECT
T ss_pred eEEEEe---CCCChHHhCCCCCCCCEEEEECCEECC
Confidence 555554 356555444 8999999999998764
No 85
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A
Probab=42.92 E-value=12 Score=29.13 Aligned_cols=16 Identities=31% Similarity=0.667 Sum_probs=14.7
Q ss_pred CCCCcEEEccCCcEEE
Q 007947 417 MRPGDIITAANGKTIE 432 (583)
Q Consensus 417 ~rPGDVvts~~GkTVE 432 (583)
++|||+|.+.||+.|+
T Consensus 40 l~~GD~I~~ing~~v~ 55 (81)
T 2rcz_A 40 IQEGDVVLKINGTVTE 55 (81)
T ss_dssp CCTTCEEEEETTEECT
T ss_pred CCCCCEEEEECCEECC
Confidence 9999999999998874
No 86
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A
Probab=42.85 E-value=12 Score=37.67 Aligned_cols=32 Identities=16% Similarity=0.252 Sum_probs=25.0
Q ss_pred ceEEEEEEeecccCCCCCC-CCCCcEEEccCCcEEE
Q 007947 398 GVEVHFIVAACENMISGTG-MRPGDIITAANGKTIE 432 (583)
Q Consensus 398 ~vnV~~ii~~~ENm~sg~A-~rPGDVvts~~GkTVE 432 (583)
++.|.. ..+|.|...| +||||+|++.||+.|.
T Consensus 245 g~~V~~---V~~~spA~~aGL~~GD~I~~ing~~v~ 277 (318)
T 1te0_A 245 GIVVNE---VSPDGPAANAGIQVNDLIISVDNKPAI 277 (318)
T ss_dssp CEEEEE---ECTTSTTTTTCCCTTCCEEEETTEECC
T ss_pred cEEEEE---eCCCChHHHCCCCCCCEEEEECCEEcC
Confidence 344444 4688888777 9999999999999874
No 87
>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.83 E-value=4 Score=34.06 Aligned_cols=26 Identities=23% Similarity=0.345 Sum_probs=20.5
Q ss_pred eecccCCCCCC--CCCCcEEEccCCcEE
Q 007947 406 AACENMISGTG--MRPGDIITAANGKTI 431 (583)
Q Consensus 406 ~~~ENm~sg~A--~rPGDVvts~~GkTV 431 (583)
-..+|.|...| ++|||+|.+.||+.|
T Consensus 41 ~V~~~spA~~agGL~~GD~I~~ing~~v 68 (100)
T 2edp_A 41 KIEDGGKAALSQKMRTGDELVNINGTPL 68 (100)
T ss_dssp CCCTTSHHHHHTSCCTTCEEEEETTEEC
T ss_pred EECCCCHHHHcCCCCCCCEEEEECCEEc
Confidence 34466666665 999999999999977
No 88
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens}
Probab=42.64 E-value=5.7 Score=32.09 Aligned_cols=31 Identities=23% Similarity=0.408 Sum_probs=21.0
Q ss_pred eEEEEEEeecccCCCCC-C-CCCCcEEEccCCcEEE
Q 007947 399 VEVHFIVAACENMISGT-G-MRPGDIITAANGKTIE 432 (583)
Q Consensus 399 vnV~~ii~~~ENm~sg~-A-~rPGDVvts~~GkTVE 432 (583)
+-|..+ .+|.|... . ++|||+|.+.||+.|+
T Consensus 29 ~~V~~V---~~~spA~~aG~L~~GD~I~~ing~~v~ 61 (90)
T 2q9v_A 29 IYIGHI---VPLGAADTDGRLRSGDELISVDGTPVI 61 (90)
T ss_dssp EEEEEE---CTTSHHHHHCCCCTTCEEEEETTEECT
T ss_pred EEEEEE---CCCChHHHCCCCCCCCEEEEECCEECC
Confidence 445444 34544432 2 8999999999998774
No 89
>2zog_A Cytosolic non-specific dipeptidase; metallopeptidase, protein-inhibitor complex, CNDP2, CNDP DIP 2, bestatin, L-carnosine, carnosinase, Zn; HET: BES; 1.70A {Mus musculus} PDB: 2zof_A*
Probab=42.39 E-value=1.9e+02 Score=30.08 Aligned_cols=125 Identities=21% Similarity=0.174 Sum_probs=68.2
Q ss_pred HHHHHHHHHhhcCCCCCCCh------HHHHHHHHHHhhhcCCceEEEEeCHHHH-HHcCC-----CchhhhcccCCCCCe
Q 007947 263 SSAVIFGRELVNSPANVLTP------AVLAEEASKVASMYSDVLSATILDIEKC-KELKM-----GSYLGVAAASANLPH 330 (583)
Q Consensus 263 a~~~~~aRdL~n~P~N~ltP------~~~A~~a~~~~~~~~~~~~v~V~d~~~l-~~~gm-----g~llaV~~GS~~pPr 330 (583)
.+-+.+-|+|++.|.---.+ ...++..++..++++ +++++..-..- -..|. +.+++
T Consensus 20 ~~~~~~l~~l~~~ps~s~~e~~~~~~~~~~~~l~~~l~~~G--~~~~~~~~~~~~~~~~~~~~~~~~v~a---------- 87 (479)
T 2zog_A 20 DRYVKKLAEWVAIQSVSAWPEKRGEIRRMMEVAAADVQRLG--GSVELVDIGKQKLPDGSEIPLPPILLG---------- 87 (479)
T ss_dssp HHHHHHHHHHHHSCCBTTCGGGHHHHHHHHHHHHHHHHHTT--CEEEEECCCEEECTTSCEEECCCEEEE----------
T ss_pred HHHHHHHHHHhcCCCccCCcccchHHHHHHHHHHHHHHHcC--CeEEEeeccccccCCCcccCCCCEEEE----------
Confidence 34578899999999765554 467788888888875 88876541000 00111 23333
Q ss_pred EEEEEEcCCCCCCCceEEEEecceeecC---C---CCCCCCC-----Ccccccccc-ccc-chHHHHHHHHHHHHhcC--
Q 007947 331 FIHLCYKPPGGSAKIKLALVGKGLTFDS---G---GYNIKTG-----PGCLIENMK-YDM-GGAAAVLGAAKAIGQIK-- 395 (583)
Q Consensus 331 li~l~Y~g~~~~~~~~i~LVGKGiTFDs---G---G~slKp~-----~~~~M~~MK-~DM-~GAAaVlga~~aia~lk-- 395 (583)
++.+ +...++|+|-|= +|+ | +.+-.|- .+ .|..== .|| +|.|+.+++++++.+.+
T Consensus 88 ----~~~~--~~~~~~i~l~aH---~D~vp~~~~~~w~~~Pf~~~~~~g-~l~grGa~D~K~g~a~~l~a~~~l~~~~~~ 157 (479)
T 2zog_A 88 ----KLGS--DPQKKTVCIYGH---LDVQPAALEDGWDSEPFTLVEREG-KLYGRGSTDDKGPVAGWMNALEAYQKTGQE 157 (479)
T ss_dssp ----EECC--CTTSCEEEEEEE---CCBCCCCGGGTCSSCTTSCEEETT-EEESTTTTTTHHHHHHHHHHHHHHHHTTCC
T ss_pred ----EecC--CCCCCeEEEEEe---cCCCCCCccccCcCCCCcceeECC-EEEeeccccChHHHHHHHHHHHHHHHhCCC
Confidence 2322 112234444432 221 1 1111121 10 121111 677 89999999999998865
Q ss_pred CCceEEEEEEeeccc
Q 007947 396 PPGVEVHFIVAACEN 410 (583)
Q Consensus 396 lp~vnV~~ii~~~EN 410 (583)
+| .+|..+.-..|=
T Consensus 158 ~~-~~v~~~~~~~EE 171 (479)
T 2zog_A 158 IP-VNLRFCLEGMEE 171 (479)
T ss_dssp CS-SEEEEEEESCGG
T ss_pred CC-CcEEEEEecccc
Confidence 55 678777655543
No 90
>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens}
Probab=42.26 E-value=4.8 Score=33.07 Aligned_cols=31 Identities=23% Similarity=0.349 Sum_probs=21.6
Q ss_pred eEEEEEEeecccCCCCCC--CCCCcEEEccCCcEEE
Q 007947 399 VEVHFIVAACENMISGTG--MRPGDIITAANGKTIE 432 (583)
Q Consensus 399 vnV~~ii~~~ENm~sg~A--~rPGDVvts~~GkTVE 432 (583)
+-|..+. +|.|...+ ++|||+|.+.||+.|+
T Consensus 32 v~V~~V~---~~spA~~aG~l~~GD~I~~vng~~v~ 64 (98)
T 2opg_A 32 IIIHEVY---EEGAACKDGRLWAGDQILEVNGIDLR 64 (98)
T ss_dssp EEEEEEC---TTSHHHHHCCCCTTCEEEEETTEECT
T ss_pred EEEEEEC---CCChHHhCCCCCCCCEEEEECCEECC
Confidence 5555543 45554433 9999999999998763
No 91
>1y0y_A FRV operon protein FRVX; aminopeptidase, PDZ, hydrolase; HET: ATI; 1.60A {Pyrococcus horikoshii} SCOP: b.49.3.1 c.56.5.4 PDB: 1y0r_A* 1xfo_A
Probab=41.87 E-value=1.3e+02 Score=30.44 Aligned_cols=57 Identities=12% Similarity=0.137 Sum_probs=39.6
Q ss_pred HHHHHHhhcCCCCCCCh-HHHHHHHHHHhhhcCCceEEEEeCHHHHHHcCCCchhhhcccCCCCCeEEEE
Q 007947 266 VIFGRELVNSPANVLTP-AVLAEEASKVASMYSDVLSATILDIEKCKELKMGSYLGVAAASANLPHFIHL 334 (583)
Q Consensus 266 ~~~aRdL~n~P~N~ltP-~~~A~~a~~~~~~~~~~~~v~V~d~~~l~~~gmg~llaV~~GS~~pPrli~l 334 (583)
+.+-++|++.|+---.. ..+++..++..++++ +++++ | +++.+++.-.|+ +|+++..
T Consensus 9 ~~~l~~L~~~~s~sg~e~~~~~~~l~~~l~~~g--~~~~~-d-------~~gnlia~~~g~--~~~i~l~ 66 (353)
T 1y0y_A 9 YELLKKVVEAPGVSGYEFLGIRDVVIEEIKDYV--DEVKV-D-------KLGNVIAHKKGE--GPKVMIA 66 (353)
T ss_dssp HHHHHHHHHSCCBTTCGGGTHHHHHHHHHGGGS--SEEEE-C-------TTCCEEEEECCS--SCEEEEE
T ss_pred HHHHHHHHhCCCCCccchHHHHHHHHHHHHhhC--CeEEE-c-------CCCCEEEEecCC--CccEEEE
Confidence 46788899998765555 678888888888886 67765 2 467787765665 3554443
No 92
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A
Probab=41.63 E-value=5 Score=33.11 Aligned_cols=25 Identities=28% Similarity=0.492 Sum_probs=19.0
Q ss_pred cccCCCCCC-CCCCcEEEccCCcEEE
Q 007947 408 CENMISGTG-MRPGDIITAANGKTIE 432 (583)
Q Consensus 408 ~ENm~sg~A-~rPGDVvts~~GkTVE 432 (583)
.+|.|...| .++||+|.+.||+.|+
T Consensus 42 ~~~spA~~aGl~~GD~I~~ing~~v~ 67 (99)
T 3khf_A 42 EDGSPAQEAGLRAGDLITHINGESVL 67 (99)
T ss_dssp CTTSHHHHHTCCTTCEEEEETTEECT
T ss_pred CCCCHHHHcCCCCCCEEEEECCEECC
Confidence 445554443 9999999999998875
No 93
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A
Probab=41.55 E-value=15 Score=33.83 Aligned_cols=31 Identities=26% Similarity=0.282 Sum_probs=24.2
Q ss_pred eEEEEEEeecccCCCCCCCCCCcEEEccCCcEEE
Q 007947 399 VEVHFIVAACENMISGTGMRPGDIITAANGKTIE 432 (583)
Q Consensus 399 vnV~~ii~~~ENm~sg~A~rPGDVvts~~GkTVE 432 (583)
+-|..+ .+|.|....+||||+|.+.||+.|+
T Consensus 26 ~~V~~v---~~~spA~~gl~~GD~I~~vng~~v~ 56 (195)
T 2qbw_A 26 IFVTRV---QPEGPASKLLQPGDKIIQANGYSFI 56 (195)
T ss_dssp EEEEEE---CTTSTTTTTCCTTCEEEEETTEECT
T ss_pred EEEEEE---CCCChHHhCCCCCCEEEEECCEECC
Confidence 555554 5677777789999999999999764
No 94
>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A
Probab=41.51 E-value=5.3 Score=33.13 Aligned_cols=31 Identities=10% Similarity=0.090 Sum_probs=21.9
Q ss_pred eEEEEEEeecccCCCCCC--CCCCcEEEccCCcEEE
Q 007947 399 VEVHFIVAACENMISGTG--MRPGDIITAANGKTIE 432 (583)
Q Consensus 399 vnV~~ii~~~ENm~sg~A--~rPGDVvts~~GkTVE 432 (583)
+-|..+ .+|.|...| ++|||+|.+.||+.|+
T Consensus 36 v~V~~V---~~~spA~~aG~L~~GD~I~~vng~~v~ 68 (102)
T 2i1n_A 36 IFITKI---IPGGAAAMDGRLGVNDCVLRVNEVDVS 68 (102)
T ss_dssp EEEEEE---CTTSHHHHHCCCCTTCEEEEETTEECS
T ss_pred EEEEEE---CCCCHHHHCCCCCCCCEEEEECCEECC
Confidence 555554 345554433 9999999999998774
No 95
>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus}
Probab=41.46 E-value=5 Score=32.04 Aligned_cols=31 Identities=19% Similarity=0.384 Sum_probs=21.2
Q ss_pred eEEEEEEeecccCCCCC-C-CCCCcEEEccCCcEEE
Q 007947 399 VEVHFIVAACENMISGT-G-MRPGDIITAANGKTIE 432 (583)
Q Consensus 399 vnV~~ii~~~ENm~sg~-A-~rPGDVvts~~GkTVE 432 (583)
+-|..+ .+|.|... . ++|||+|.+.||+.|+
T Consensus 27 ~~V~~v---~~~spA~~aG~l~~GD~I~~vng~~v~ 59 (85)
T 2i04_A 27 LQIKSL---VLDGPAALDGKMETGDVIVSVNDTCVL 59 (85)
T ss_dssp EEEEEE---CTTSHHHHHCCCCTTCEEEEETTEECT
T ss_pred EEEEEE---CCCChHHHcCCCCCCCEEEEECCEECC
Confidence 445444 34544433 2 9999999999998774
No 96
>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A
Probab=41.27 E-value=6.1 Score=35.33 Aligned_cols=32 Identities=25% Similarity=0.320 Sum_probs=22.8
Q ss_pred ceEEEEEEeecccCCCCCC-CCCCcEEEccCCcEEE
Q 007947 398 GVEVHFIVAACENMISGTG-MRPGDIITAANGKTIE 432 (583)
Q Consensus 398 ~vnV~~ii~~~ENm~sg~A-~rPGDVvts~~GkTVE 432 (583)
++-|..+. +|.|...| ++|||+|.+.||+.|+
T Consensus 65 gv~V~~V~---~~spA~~aGL~~GD~I~~vng~~v~ 97 (139)
T 2vz5_A 65 GIYVTRVS---EGGPAEIAGLQIGDKIMQVNGWDMT 97 (139)
T ss_dssp CEEEEEEC---TTSHHHHHTCCTTCEEEEETTEECT
T ss_pred CEEEEEEC---CCCHHHHCCCCCCCEEEEECCEEcC
Confidence 36666553 45554444 9999999999998764
No 97
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} SCOP: b.36.1.0 PDB: 3r69_A*
Probab=41.22 E-value=5.2 Score=32.60 Aligned_cols=25 Identities=24% Similarity=0.457 Sum_probs=18.5
Q ss_pred cccCCCCCC-CCCCcEEEccCCcEEE
Q 007947 408 CENMISGTG-MRPGDIITAANGKTIE 432 (583)
Q Consensus 408 ~ENm~sg~A-~rPGDVvts~~GkTVE 432 (583)
.+|.|...| .+|||+|.+.||+.|.
T Consensus 37 ~~~spA~~aGl~~GD~I~~ing~~v~ 62 (95)
T 3r68_A 37 EPGSPAEAAGLKNNDLVVAVNGKSVE 62 (95)
T ss_dssp CTTSHHHHHTCCTTEEEEEETTEECT
T ss_pred CCCCHHHHCCCCCCCEEEEECCEECC
Confidence 345554333 9999999999998863
No 98
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A
Probab=41.03 E-value=5.2 Score=32.55 Aligned_cols=31 Identities=23% Similarity=0.403 Sum_probs=21.0
Q ss_pred eEEEEEEeecccCCCCC-C-CCCCcEEEccCCcEEE
Q 007947 399 VEVHFIVAACENMISGT-G-MRPGDIITAANGKTIE 432 (583)
Q Consensus 399 vnV~~ii~~~ENm~sg~-A-~rPGDVvts~~GkTVE 432 (583)
+-|..+. +|.|... . ++|||+|.+.||+.|+
T Consensus 35 v~V~~V~---~~spA~~aG~l~~GD~I~~vng~~v~ 67 (94)
T 2fe5_A 35 IYITKII---EGGAAQKDGRLQIGDRLLAVNNTNLQ 67 (94)
T ss_dssp EEEEEEC---TTSHHHHHCCCCTTCEEEEETTEECT
T ss_pred EEEEEEC---CCChHHHcCCCCCCCEEEEECCEECC
Confidence 5555543 4444432 2 8999999999998764
No 99
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A
Probab=40.92 E-value=4.3 Score=33.05 Aligned_cols=24 Identities=17% Similarity=0.257 Sum_probs=18.1
Q ss_pred ccCCCCCC-CCCCcEEEccCCcEEE
Q 007947 409 ENMISGTG-MRPGDIITAANGKTIE 432 (583)
Q Consensus 409 ENm~sg~A-~rPGDVvts~~GkTVE 432 (583)
+|.|...+ ++|||+|.+.||+.|+
T Consensus 36 ~~spA~~aGl~~GD~I~~ing~~v~ 60 (91)
T 2vsp_A 36 KGGPADLAGLEDEDVIIEVNGVNVL 60 (91)
T ss_dssp TTSHHHHTTCCTTCEEEEETTEECT
T ss_pred CCChHHHcCCCCCCEEEEECCEECC
Confidence 44444333 9999999999999874
No 100
>2dx6_A Hypothetical protein TTHA0132; conserved hypothetical protein, structural genomics, NPPSFA; 1.78A {Thermus thermophilus} PDB: 3v45_A
Probab=40.84 E-value=2e+02 Score=25.80 Aligned_cols=110 Identities=15% Similarity=0.123 Sum_probs=67.7
Q ss_pred eEEEeecCCcccccccEEEEEEecCCCCCCCCcccchhHHHHHHHHhhHHHHHHHhcCCCCCCCCcEEEEecCCCCccEE
Q 007947 79 ISFAAKEVDVVEWKGDILAVGVTEKDMGKDDNSKFQNSILKKLDAQLGGLLSEASSEEDFTGKAGQSTVIRLPGIGSKRV 158 (583)
Q Consensus 79 ~~~~~~~~~~~~~~~D~LVVgV~e~~~~~~~~s~~~~~~~~~ld~~l~g~Ls~~~~~~~f~Gk~Ge~~~l~~~~~~~~rv 158 (583)
|.+.....|..+.+.|++|=++....... ......+.+..+..+.+..+... .-+.|+.........+.+.|
T Consensus 2 ~~i~i~~GDI~~~~~daIVnaaN~~l~~g-------gGv~~aI~~~~G~~l~~~c~~~g-~~~~G~a~it~~~~L~~~~V 73 (159)
T 2dx6_A 2 ARIRVVQGDITEFQGDAIVNAANNYLKLG-------AGVAGAILRKGGPSIQEECDRIG-KIRVGEAAVTGAGNLPVRYV 73 (159)
T ss_dssp CEEEEEESCGGGCCSSEEEEEEETTCCCC-------STTHHHHHHHHCTHHHHHHHHHC-CCCTTCEEEEECTTSSSSEE
T ss_pred eEEEEEECcCCcCCCCEEEECCCCCCCCC-------chHHHHHHHHhCHHHHHHHHhcC-CCCCCcEEEecCCCCCCCEE
Confidence 45666788888999999999987765321 22344555555555555554321 23678877655444555665
Q ss_pred EE-EecCCCCCChHHHHHHHHHHHHHHHHcccCcEEEEe
Q 007947 159 GL-IGLGQSASRAGDFRSLGESVAAAAKAAQASNVAVVL 196 (583)
Q Consensus 159 ll-VGLGk~~~~~~~~r~~~~a~a~~~k~~~~~~v~i~l 196 (583)
+- +|---.+.+.+.+++.-....+.+++.+.+++++-.
T Consensus 74 ih~vgp~~~~~~~~~L~~~~~~~L~~a~~~~~~sIa~P~ 112 (159)
T 2dx6_A 74 IHAAVLGDEPASLETVRKATKSALEKAVELGLKTVAFPL 112 (159)
T ss_dssp EEEEEESSSCCCHHHHHHHHHHHHHHHHHTTCSEEEECC
T ss_pred EEEeCCCCCCchHHHHHHHHHHHHHHHHHcCCcEEEECC
Confidence 42 443111234567777777777778888888776643
No 101
>2hc8_A PACS, cation-transporting ATPase, P-type; copper, COPA, COPB, actuator, transport protein; 1.65A {Archaeoglobus fulgidus} PDB: 2voy_F
Probab=40.82 E-value=14 Score=31.96 Aligned_cols=64 Identities=19% Similarity=0.273 Sum_probs=42.9
Q ss_pred HHHHHHhcCCCceEEEEEEeecccCCCCCCCCCCcEEEccCCcEEEeecCCccCceehhhhhhHHHhcCCCeEEEecchh
Q 007947 387 AAKAIGQIKPPGVEVHFIVAACENMISGTGMRPGDIITAANGKTIEVNNTDAEGRLTLADALIYACNQGVDKVIDLATLT 466 (583)
Q Consensus 387 a~~aia~lklp~vnV~~ii~~~ENm~sg~A~rPGDVvts~~GkTVEV~NTDAEGRLvLADaL~Ya~~~~p~~iIDiATLT 466 (583)
++.++.++.++.++|+ -.--+-.+.-.-.+|||+|.-..|..|- |.||++=. ...||=+.||
T Consensus 2 al~~L~~l~p~~a~v~--r~g~~~~i~~~~l~~GDiv~v~~G~~iP-----aDg~v~~g-----------~~~vdeS~LT 63 (113)
T 2hc8_A 2 AIKKLVGLQAKTAVVI--RDGKEIAVPVEEVAVGDIVIVRPGEKIP-----VDGVVVEG-----------ESYVDESMIS 63 (113)
T ss_dssp HHHHHHHHSCSEEEEE--ETTEEEEEEGGGCCTTCEEEECTTCBCC-----SEEEEEEC-----------CEEEECHHHH
T ss_pred HHHHHhcCCCCEEEEE--ECCEEEEEEHHHCCCCCEEEECCCCEEe-----eeEEEEEc-----------eEEEEccccC
Confidence 4677788887755553 2222334666889999999999886654 34555421 3689999999
Q ss_pred HH
Q 007947 467 GA 468 (583)
Q Consensus 467 GA 468 (583)
|-
T Consensus 64 GE 65 (113)
T 2hc8_A 64 GE 65 (113)
T ss_dssp CC
T ss_pred CC
Confidence 85
No 102
>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.32 E-value=9.1 Score=31.59 Aligned_cols=27 Identities=26% Similarity=0.265 Sum_probs=21.4
Q ss_pred eecccCCCCCCCCCCcEEEccCCcEEE
Q 007947 406 AACENMISGTGMRPGDIITAANGKTIE 432 (583)
Q Consensus 406 ~~~ENm~sg~A~rPGDVvts~~GkTVE 432 (583)
-..+|.|....++|||+|.+.||+.|+
T Consensus 37 ~V~~~spA~agL~~GD~Il~ing~~v~ 63 (96)
T 2edv_A 37 AVTAGGSAHGKLFPGDQILQMNNEPAE 63 (96)
T ss_dssp CBCSSSSSTTTSCTTCBEEEESSCBST
T ss_pred EECCCCchhhCCCCCCEEEEECCEECC
Confidence 345677766679999999999998764
No 103
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens}
Probab=39.67 E-value=4.5 Score=32.85 Aligned_cols=31 Identities=29% Similarity=0.364 Sum_probs=21.0
Q ss_pred eEEEEEEeecccCCCCCC--CCCCcEEEccCCcEEE
Q 007947 399 VEVHFIVAACENMISGTG--MRPGDIITAANGKTIE 432 (583)
Q Consensus 399 vnV~~ii~~~ENm~sg~A--~rPGDVvts~~GkTVE 432 (583)
+-|..+ .+|.|...+ .+|||+|.+.||+.|+
T Consensus 31 v~V~~V---~~~spA~~aG~L~~GD~I~~vng~~v~ 63 (92)
T 2qg1_A 31 VFVSDI---VKGGIADADGRLMQGDQILMVNGEDVR 63 (92)
T ss_dssp CEEEEE---CTTSHHHHHTCCCTTCEEEEETTEECT
T ss_pred EEEEEE---CCCCHHHHcCCCCCCCEEEEECCEECC
Confidence 555444 344444322 9999999999998874
No 104
>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=39.51 E-value=6 Score=34.43 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=19.0
Q ss_pred cCCCCCC-CCCCcEEEccCCcEEE
Q 007947 410 NMISGTG-MRPGDIITAANGKTIE 432 (583)
Q Consensus 410 Nm~sg~A-~rPGDVvts~~GkTVE 432 (583)
|.|...| +||||+|.+.||+.|+
T Consensus 56 ~spA~~aGL~~GD~Il~Vng~~v~ 79 (118)
T 2yub_A 56 ISPNNRNAIHPGDRILEINGTPVR 79 (118)
T ss_dssp SCTTHHHHCCTTCCEEEESSSBTT
T ss_pred CChHHHcCCCCCCEEEEECCEECC
Confidence 6666665 9999999999998763
No 105
>2wyr_A Cobalt-activated peptidase TET1; hydrolase, large SELF-assembled dodecamer, hyperthermophilic; 2.24A {Pyrococcus horikoshii} PDB: 2cf4_A
Probab=39.32 E-value=1.4e+02 Score=29.80 Aligned_cols=55 Identities=9% Similarity=0.079 Sum_probs=38.7
Q ss_pred HHHHHHhhcCCCCCCChHHHHHHHHHHhhhcCCceEEEEeCHHHHHHcCCCchhhhcccCCCCCeEEE
Q 007947 266 VIFGRELVNSPANVLTPAVLAEEASKVASMYSDVLSATILDIEKCKELKMGSYLGVAAASANLPHFIH 333 (583)
Q Consensus 266 ~~~aRdL~n~P~N~ltP~~~A~~a~~~~~~~~~~~~v~V~d~~~l~~~gmg~llaV~~GS~~pPrli~ 333 (583)
+.+-++|++.|+---....+++..++..++++ + +++ | ++|.+++.-.| ..|+++.
T Consensus 5 ~~~l~~l~~~~s~sg~e~~~~~~l~~~l~~~g--~-~~~-d-------~~gnlia~~~~--~~~~i~l 59 (332)
T 2wyr_A 5 IEKLKKFTQIPGISGYEERIREEIIREIKDFA--D-YKV-D-------AIGNLIVELGE--GEERILF 59 (332)
T ss_dssp HHHHHHHHTSCCBTTCCHHHHHHHHHHHTTTC--C-CEE-C-------TTCCEEEEEES--SSEEEEE
T ss_pred HHHHHHHHcCCCCCCcHHHHHHHHHHHHhhcC--c-EEE-c-------CCCeEEEEecC--CCceEEE
Confidence 45788999998866667788999988888886 5 554 3 56778876555 2444443
No 106
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Probab=39.14 E-value=18 Score=36.56 Aligned_cols=26 Identities=12% Similarity=0.271 Sum_probs=22.2
Q ss_pred ecccCCCCCC-CCCCcEEEccCCcEEE
Q 007947 407 ACENMISGTG-MRPGDIITAANGKTIE 432 (583)
Q Consensus 407 ~~ENm~sg~A-~rPGDVvts~~GkTVE 432 (583)
..+|.|...| +|+||+|++.||+.|.
T Consensus 249 v~~~spA~~aGl~~GD~I~~ing~~v~ 275 (324)
T 1y8t_A 249 VVAGGAAANAGVPKGVVVTKVDDRPIN 275 (324)
T ss_dssp ECTTSTTTTTTCCTTCEEEEETTEECC
T ss_pred ECCCChHHHcCCCCCCEEEEECCEECC
Confidence 4578888777 9999999999999874
No 107
>3qik_A Phosphatidylinositol 3,4,5-trisphosphate-dependen exchanger 1 protein; PDZ domain, structural genomics consortium, SGC, hydrolase R; 2.29A {Homo sapiens}
Probab=38.90 E-value=2.6 Score=36.52 Aligned_cols=29 Identities=10% Similarity=0.145 Sum_probs=22.8
Q ss_pred ecccCCCCCC-CCCCcEEEccCCcEEEeec
Q 007947 407 ACENMISGTG-MRPGDIITAANGKTIEVNN 435 (583)
Q Consensus 407 ~~ENm~sg~A-~rPGDVvts~~GkTVEV~N 435 (583)
..+|.|...| .+|||+|.+-||+.|++.+
T Consensus 46 V~~gSpA~~AGL~~GD~I~~Ing~~v~~~s 75 (101)
T 3qik_A 46 VQRGSLAEVAGLQVGRKIYSINEDLVFLRP 75 (101)
T ss_dssp ECTTSHHHHHTCCTTCBEEEETTEESTTSC
T ss_pred ECCCCHHHHcCCCCCCEEEEECCEEcCcCC
Confidence 4467666554 9999999999999996555
No 108
>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A
Probab=38.73 E-value=7.2 Score=32.85 Aligned_cols=45 Identities=13% Similarity=0.197 Sum_probs=29.2
Q ss_pred eEEEEEEeecccCCCCCC--CCCCcEEEccCCcEEEeecCCccCceehhhhhhHHHhc
Q 007947 399 VEVHFIVAACENMISGTG--MRPGDIITAANGKTIEVNNTDAEGRLTLADALIYACNQ 454 (583)
Q Consensus 399 vnV~~ii~~~ENm~sg~A--~rPGDVvts~~GkTVEV~NTDAEGRLvLADaL~Ya~~~ 454 (583)
+-|..+. +|.|...+ ++|||+|.+-||+.|+ | +-+.|+..+.+..
T Consensus 41 ~~V~~V~---~~spA~~aG~l~~GD~I~~ing~~v~--~------~~~~~~~~~l~~~ 87 (111)
T 2koj_A 41 IYVKNIL---PRGAAIQDGRLKAGDRLIEVNGVDLA--G------KSQEEVVSLLRST 87 (111)
T ss_dssp EEEEEEC---SSSHHHHHCSSCTTCEEEEETTEECT--T------SCHHHHHHHHHHC
T ss_pred EEEEEEC---CCChHHHCCCCCCCCEEEEECCEECC--C------CCHHHHHHHHHhC
Confidence 5555554 45555443 8999999999998773 2 2355666555543
No 109
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} SCOP: b.36.1.0
Probab=38.68 E-value=6.3 Score=32.89 Aligned_cols=25 Identities=20% Similarity=0.260 Sum_probs=18.8
Q ss_pred cccCCCCCC-CCCCcEEEccCCcEEE
Q 007947 408 CENMISGTG-MRPGDIITAANGKTIE 432 (583)
Q Consensus 408 ~ENm~sg~A-~rPGDVvts~~GkTVE 432 (583)
.+|.|...| .+|||+|.+.||+.|+
T Consensus 34 ~~~spA~~aGl~~GD~I~~ing~~v~ 59 (106)
T 3ngh_A 34 EEGSPAEKAGLLDGDRVLRINGVFVD 59 (106)
T ss_dssp CTTSHHHHTTCCTTCEEEEETTEECT
T ss_pred CCCCHHHHcCCCCCCEEEEECCEECC
Confidence 445554444 9999999999998763
No 110
>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A
Probab=38.33 E-value=10 Score=30.55 Aligned_cols=25 Identities=24% Similarity=0.445 Sum_probs=19.0
Q ss_pred cccCCCCC-CCCCCcEEEccCCcEEE
Q 007947 408 CENMISGT-GMRPGDIITAANGKTIE 432 (583)
Q Consensus 408 ~ENm~sg~-A~rPGDVvts~~GkTVE 432 (583)
.+|.|... .+++||+|.+.||+.|.
T Consensus 12 ~~~spA~~aGl~~GD~I~~ing~~v~ 37 (91)
T 2zpm_A 12 QPNSAASXAGLQAGDRIVXVDGQPLT 37 (91)
T ss_dssp CTTSHHHHTTCCTTCEEEEETTEECC
T ss_pred CCCChHHhcCCCCCCEEEEECCeEcC
Confidence 35555443 59999999999998774
No 111
>2rb7_A Peptidase, M20/M25/M40 family; YP_387682.1, CO-catalytic metallopeptidase, peptidase family M20/M25/M40, structural genomics; HET: MSE PGE PG4; 1.60A {Desulfovibrio desulfuricans subsp}
Probab=37.87 E-value=35 Score=34.70 Aligned_cols=40 Identities=15% Similarity=0.114 Sum_probs=27.0
Q ss_pred HHHHHHHHhhcCCCCCCCh---HHHHHHHHHHhhhcCCceEEEEe
Q 007947 264 SAVIFGRELVNSPANVLTP---AVLAEEASKVASMYSDVLSATIL 305 (583)
Q Consensus 264 ~~~~~aRdL~n~P~N~ltP---~~~A~~a~~~~~~~~~~~~v~V~ 305 (583)
+-+.+-|+|++.|.---+| ...++...+..++++ +++++.
T Consensus 7 ~~~~~l~~l~~ips~s~~~~~e~~~~~~l~~~l~~~G--~~~~~~ 49 (364)
T 2rb7_A 7 HIVELTSDLIRFPSMHSRPEQISRCAGFIMDWCAQNG--IHAERM 49 (364)
T ss_dssp HHHHHHHHHHTSCCCTTCHHHHHHHHHHHHHHHHHTT--CCCEEE
T ss_pred HHHHHHHHHHcCCCCCCCcchHHHHHHHHHHHHHHcC--CeEEEe
Confidence 3467899999999765333 345666677777775 776653
No 112
>3io1_A Aminobenzoyl-glutamate utilization protein; peptidase_M20D superfamily, protein structure initiative II, NYSGXRC, structural genomics; 2.50A {Klebsiella pneumoniae subsp}
Probab=37.34 E-value=2.2e+02 Score=29.58 Aligned_cols=41 Identities=7% Similarity=-0.002 Sum_probs=32.1
Q ss_pred HHHHHHHHHhhcCCCCCCChHHHHHHHHHHhhhcCCceEEEEe
Q 007947 263 SSAVIFGRELVNSPANVLTPAVLAEEASKVASMYSDVLSATIL 305 (583)
Q Consensus 263 a~~~~~aRdL~n~P~N~ltP~~~A~~a~~~~~~~~~~~~v~V~ 305 (583)
.+-+.+.|+|...|.--..=..-++...+..++++ ++|+..
T Consensus 14 ~~~~~~~~~lh~~Pe~~~~E~~t~~~i~~~L~~~G--~~v~~~ 54 (445)
T 3io1_A 14 PSMTQWRRDFHLHAESGWLEFRTASKVADILDGLG--YQLALG 54 (445)
T ss_dssp HHHHHHHHHHHHTCCCTTCCHHHHHHHHHHHHHTT--CEEEEG
T ss_pred HHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHCC--CeEEec
Confidence 35678999999999877666667777888888875 888763
No 113
>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens}
Probab=37.26 E-value=6.7 Score=33.78 Aligned_cols=17 Identities=29% Similarity=0.388 Sum_probs=15.4
Q ss_pred CCCCCcEEEccCCcEEE
Q 007947 416 GMRPGDIITAANGKTIE 432 (583)
Q Consensus 416 A~rPGDVvts~~GkTVE 432 (583)
.+++||+|.+-||+.|+
T Consensus 61 GL~~GD~Il~VnG~~v~ 77 (109)
T 2vsv_A 61 GAREGDYIVSIQLVDCK 77 (109)
T ss_dssp TCCTTCEEEEETTEECT
T ss_pred CCCCCCEEEEECCEECC
Confidence 39999999999999875
No 114
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A
Probab=37.23 E-value=6.6 Score=33.08 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=18.6
Q ss_pred cccCCCCCC--CCCCcEEEccCCcEEE
Q 007947 408 CENMISGTG--MRPGDIITAANGKTIE 432 (583)
Q Consensus 408 ~ENm~sg~A--~rPGDVvts~~GkTVE 432 (583)
.+|.|...| .+|||+|.+-||+.|+
T Consensus 44 ~~gspA~~aG~L~~GD~Il~ING~~v~ 70 (97)
T 2ejy_A 44 LHGGMIHRQGSLHVGDEILEINGTNVT 70 (97)
T ss_dssp CSSSHHHHHTCCCTTCEEEEETTBCCC
T ss_pred CCCCHHHHcCCCCCCCEEEEECCEECC
Confidence 345554442 7999999999998775
No 115
>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens}
Probab=37.17 E-value=6.5 Score=34.32 Aligned_cols=32 Identities=25% Similarity=0.636 Sum_probs=21.9
Q ss_pred ceEEEEEEeecccCCCCCC--CCCCcEEEccCCcEEE
Q 007947 398 GVEVHFIVAACENMISGTG--MRPGDIITAANGKTIE 432 (583)
Q Consensus 398 ~vnV~~ii~~~ENm~sg~A--~rPGDVvts~~GkTVE 432 (583)
++-|..+. +|.|...| ++|||+|.+.||+.|+
T Consensus 60 gv~V~~V~---~~spA~~aG~L~~GD~Il~Vng~~v~ 93 (123)
T 2iwq_A 60 GIFIKHVL---EDSPAGKNGTLKPGDRIVEVDGMDLR 93 (123)
T ss_dssp SEEEEEEC---SSSHHHHHCCCCTTCEEEEETTEECT
T ss_pred CEEEEEEC---CCChHHHcCCCCCCCEEEEECCEECC
Confidence 35555553 45444332 9999999999998764
No 116
>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}
Probab=37.16 E-value=5 Score=33.67 Aligned_cols=31 Identities=13% Similarity=0.294 Sum_probs=21.5
Q ss_pred eEEEEEEeecccCCCCCC--CCCCcEEEccCCcEEE
Q 007947 399 VEVHFIVAACENMISGTG--MRPGDIITAANGKTIE 432 (583)
Q Consensus 399 vnV~~ii~~~ENm~sg~A--~rPGDVvts~~GkTVE 432 (583)
+-|..+. +|.|...+ ++|||+|.+.||+.|+
T Consensus 46 v~V~~V~---~~spA~~aG~l~~GD~I~~vng~~v~ 78 (108)
T 2jre_A 46 IYVKSLI---PGSAAALDGRIEPNDKILRVDDVNVQ 78 (108)
T ss_dssp CEEEEEC---TTSHHHHHSSCCSSEEEEEETTEECT
T ss_pred EEEEEeC---CCCHHHHcCCCCCCCEEEEECCEECC
Confidence 5555553 44444332 8999999999998774
No 117
>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1
Probab=37.00 E-value=5.5 Score=34.47 Aligned_cols=45 Identities=20% Similarity=0.228 Sum_probs=29.4
Q ss_pred eEEEEEEeecccCCCCCC--CCCCcEEEccCCcEEEeecCCccCceehhhhhhHHHhc
Q 007947 399 VEVHFIVAACENMISGTG--MRPGDIITAANGKTIEVNNTDAEGRLTLADALIYACNQ 454 (583)
Q Consensus 399 vnV~~ii~~~ENm~sg~A--~rPGDVvts~~GkTVEV~NTDAEGRLvLADaL~Ya~~~ 454 (583)
+-|..+ .+|.|...| ++|||+|.+.||+.|+ | +...|+..+.++.
T Consensus 47 ~~V~~V---~~~spA~~aG~L~~GD~I~~ing~~v~--~------~~~~~~~~~l~~~ 93 (122)
T 1v5q_A 47 PLISYI---EADSPAERCGVLQIGDRVMAINGIPTE--D------STFEEANQLLRDS 93 (122)
T ss_dssp CEEEEE---CTTSHHHHSCCCCTTCCEEEETTEESS--S------SCHHHHHHHHHHH
T ss_pred cEEEEE---CCCChHHHcCCCCCCCEEEEECCEECC--C------CCHHHHHHHHHhC
Confidence 555554 456665554 8999999999998764 2 2355565555544
No 118
>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A
Probab=36.91 E-value=6.6 Score=32.10 Aligned_cols=31 Identities=23% Similarity=0.414 Sum_probs=21.8
Q ss_pred eEEEEEEeecccCCCCCC--CCCCcEEEccCCcEEE
Q 007947 399 VEVHFIVAACENMISGTG--MRPGDIITAANGKTIE 432 (583)
Q Consensus 399 vnV~~ii~~~ENm~sg~A--~rPGDVvts~~GkTVE 432 (583)
+-|..+. +|.|...+ ++|||+|.+-||+.|+
T Consensus 35 ~~V~~V~---~~spA~~aG~l~~GD~I~~vng~~v~ 67 (96)
T 1d5g_A 35 IYVKAVI---PQGAAESDGRIHKGDRVLAVNGVSLE 67 (96)
T ss_dssp CEEEEEC---TTSHHHHTTCCCTTCEEEEETTEECT
T ss_pred EEEEEeC---CCChHHHcCCCCCCCEEEEECCEECC
Confidence 5555553 45444333 9999999999998775
No 119
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Probab=36.60 E-value=14 Score=38.10 Aligned_cols=27 Identities=33% Similarity=0.490 Sum_probs=21.2
Q ss_pred eecccCCCCCC-CCCCcEEEccCCcEEE
Q 007947 406 AACENMISGTG-MRPGDIITAANGKTIE 432 (583)
Q Consensus 406 ~~~ENm~sg~A-~rPGDVvts~~GkTVE 432 (583)
-..+|.|...| .||||||++.||+.|+
T Consensus 269 ~V~~~spA~~aGL~~GDvI~~ing~~v~ 296 (345)
T 3stj_A 269 EVLPGSGSAKAGVKAGDIITSLNGKPLN 296 (345)
T ss_dssp EECTTSHHHHHTCCTTCEECEETTEECS
T ss_pred EeccCChHHHcCCCCCCEEEEECCEECC
Confidence 34466666555 9999999999999875
No 120
>3sfj_A TAX1-binding protein 3; PDZ:peptide complex, signaling protein-inhibitor complex; 1.24A {Homo sapiens} PDB: 3dj3_A
Probab=36.14 E-value=8.2 Score=31.99 Aligned_cols=32 Identities=28% Similarity=0.395 Sum_probs=21.9
Q ss_pred ceEEEEEEeecccCCCCC-CCCCCcEEEccCCcEEE
Q 007947 398 GVEVHFIVAACENMISGT-GMRPGDIITAANGKTIE 432 (583)
Q Consensus 398 ~vnV~~ii~~~ENm~sg~-A~rPGDVvts~~GkTVE 432 (583)
++-|..+ .+|.|... ..+|||+|.+.||+.|+
T Consensus 46 gv~V~~V---~~~spA~~aGl~~GD~I~~ing~~v~ 78 (104)
T 3sfj_A 46 GIYVTRV---SEGGPAEIAGLQIGDKIMQVNGWDMT 78 (104)
T ss_dssp SEEEEEE---CTTSHHHHHTCCTTCEEEEETTEECT
T ss_pred CEEEEEE---CCCChHHHcCCCCCCEEEEECCEECC
Confidence 3555444 44555433 29999999999998864
No 121
>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens}
Probab=36.13 E-value=8.2 Score=33.34 Aligned_cols=52 Identities=17% Similarity=0.115 Sum_probs=30.6
Q ss_pred eEEEEEEeecccCCCCCC-CCCCcEEEccCCcEEEeecCCccCceehhhhhhHHHhcCCCeEEEe
Q 007947 399 VEVHFIVAACENMISGTG-MRPGDIITAANGKTIEVNNTDAEGRLTLADALIYACNQGVDKVIDL 462 (583)
Q Consensus 399 vnV~~ii~~~ENm~sg~A-~rPGDVvts~~GkTVEV~NTDAEGRLvLADaL~Ya~~~~p~~iIDi 462 (583)
+-|..+ .+|.|...+ +++||+|.+.||+.|+ + +...|...+-++. +...+.+
T Consensus 35 v~V~~V---~~~spA~~aGl~~GD~I~~ing~~v~--~------~~~~~~~~~l~~~-~~~~~~l 87 (128)
T 2kjd_A 35 QFIRSV---DPDSPAEASGLRAQDRIVEVNGVCME--G------KQHGDVVSAIRAG-GDETKLL 87 (128)
T ss_dssp EEEEEE---CTTSHHHHHTCCTTCEEEEETTEECT--T------CCHHHHHHHHHTT-CSEEEEE
T ss_pred EEEEEe---CCCChHHHcCCCCCCEEEEECCEECC--C------CCHHHHHHHHHhC-CCCEEEE
Confidence 555554 345544443 9999999999998763 2 2244555544433 4444433
No 122
>3pfe_A Succinyl-diaminopimelate desuccinylase; metal binding, merops M20 familiy, phosphorylase/hydrolase-L structural genomics; HET: MSE; 1.50A {Legionella pneumophila subsp}
Probab=36.11 E-value=1.1e+02 Score=32.11 Aligned_cols=35 Identities=34% Similarity=0.325 Sum_probs=26.1
Q ss_pred ccc-chHHHHHHHHHHHHhcCCCceEEEEEEeeccc
Q 007947 376 YDM-GGAAAVLGAAKAIGQIKPPGVEVHFIVAACEN 410 (583)
Q Consensus 376 ~DM-~GAAaVlga~~aia~lklp~vnV~~ii~~~EN 410 (583)
.|| +|.|+.+++++++.+.+.+.-+|..++-..|=
T Consensus 129 ~D~K~~~a~~l~a~~~l~~~~~~~~~v~~~~~~~EE 164 (472)
T 3pfe_A 129 ADDGYSAYASLTAIRALEQQGLPYPRCILIIEACEE 164 (472)
T ss_dssp CCCCHHHHHHHHHHHHHHHTTCCCEEEEEEEESCGG
T ss_pred ccCcHHHHHHHHHHHHHHHcCCCCCcEEEEEEeCCC
Confidence 366 88899999999999887542377777666654
No 123
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens}
Probab=35.97 E-value=4.5 Score=33.84 Aligned_cols=31 Identities=23% Similarity=0.359 Sum_probs=21.7
Q ss_pred eEEEEEEeecccCCCCCC-CCCCcEEEccCCcEEE
Q 007947 399 VEVHFIVAACENMISGTG-MRPGDIITAANGKTIE 432 (583)
Q Consensus 399 vnV~~ii~~~ENm~sg~A-~rPGDVvts~~GkTVE 432 (583)
+-|..+ .+|.|...+ ++|||+|.+.||+.|+
T Consensus 50 ~~V~~V---~~~spA~~aGl~~GD~I~~vng~~v~ 81 (104)
T 2z17_A 50 TLICKI---QEDSPAHCAGLQAGDVLANINGVSTE 81 (104)
T ss_dssp EEEEEE---CTTSHHHHHTCCTTCBCCEETTEECT
T ss_pred eEEEEE---CCCChHHHcCCCCCCEEEEECCEEcC
Confidence 555444 455554443 9999999999998764
No 124
>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=35.90 E-value=6.1 Score=32.94 Aligned_cols=16 Identities=25% Similarity=0.611 Sum_probs=14.7
Q ss_pred CCCCcEEEccCCcEEE
Q 007947 417 MRPGDIITAANGKTIE 432 (583)
Q Consensus 417 ~rPGDVvts~~GkTVE 432 (583)
++|||+|.+.||+.|+
T Consensus 47 L~~GD~I~~ing~~v~ 62 (103)
T 1wf7_A 47 VRIGDVVLSIDGISAQ 62 (103)
T ss_dssp CCTTCBEEEETTEECS
T ss_pred CCCCCEEEEECCEECC
Confidence 9999999999999874
No 125
>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=35.46 E-value=6.1 Score=34.36 Aligned_cols=31 Identities=16% Similarity=0.242 Sum_probs=21.7
Q ss_pred eEEEEEEeecccCCCCCC-CCCCcEEEccCCcEEE
Q 007947 399 VEVHFIVAACENMISGTG-MRPGDIITAANGKTIE 432 (583)
Q Consensus 399 vnV~~ii~~~ENm~sg~A-~rPGDVvts~~GkTVE 432 (583)
+-|..+. +|.|...| ++|||+|.+.||+.|+
T Consensus 48 v~V~~V~---~~spA~~aGL~~GD~I~~vng~~v~ 79 (128)
T 1uf1_A 48 IYITGVD---PGSEAEGSGLKVGDQILEVNGRSFL 79 (128)
T ss_dssp CEEEEEC---TTCHHHHHTCCTTCEEEEETTEECS
T ss_pred EEEEEEC---CCCHHHHCCCCCCCEEEEECCEECC
Confidence 6665553 45443333 9999999999997663
No 126
>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A
Probab=35.18 E-value=7.7 Score=32.06 Aligned_cols=31 Identities=32% Similarity=0.490 Sum_probs=21.6
Q ss_pred eEEEEEEeecccCCCCC-C-CCCCcEEEccCCcEEE
Q 007947 399 VEVHFIVAACENMISGT-G-MRPGDIITAANGKTIE 432 (583)
Q Consensus 399 vnV~~ii~~~ENm~sg~-A-~rPGDVvts~~GkTVE 432 (583)
+-|..+. +|.|... . ++|||+|.+-||+.|+
T Consensus 39 v~V~~V~---~~spA~~aG~L~~GD~I~~vng~~v~ 71 (101)
T 2jik_A 39 IYVSRIK---ENGAAALDGRLQEGDKILSVNGQDLK 71 (101)
T ss_dssp EEEEEEC---TTSHHHHHCCCCTTCEEEEETTEECS
T ss_pred EEEEEEC---CCCHHHHCCCCCCCCEEEEECCEECC
Confidence 5555543 4544433 3 8999999999998775
No 127
>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A
Probab=35.11 E-value=8.8 Score=32.07 Aligned_cols=31 Identities=29% Similarity=0.417 Sum_probs=21.1
Q ss_pred eEEEEEEeecccCCCCC-C-CCCCcEEEccCCcEEE
Q 007947 399 VEVHFIVAACENMISGT-G-MRPGDIITAANGKTIE 432 (583)
Q Consensus 399 vnV~~ii~~~ENm~sg~-A-~rPGDVvts~~GkTVE 432 (583)
+-|..+. +|.|... . ++|||+|.+.||+.|+
T Consensus 35 v~V~~V~---~~spA~~aG~L~~GD~I~~vng~~v~ 67 (105)
T 2awx_A 35 IYVTKII---EGGAAHKDGKLQIGDKLLAVNSVSLE 67 (105)
T ss_dssp EEEEEEC---TTSHHHHHCCCCTTCEEEEETTEECT
T ss_pred EEEEEEC---CCCHHHHCCCCCCCCEEEEECCEECC
Confidence 5555543 4444432 2 8999999999998774
No 128
>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=34.96 E-value=8.9 Score=32.15 Aligned_cols=31 Identities=19% Similarity=0.257 Sum_probs=22.5
Q ss_pred eEEEEEEeecccCCCCCC--CCCCcEEEccCCcEEE
Q 007947 399 VEVHFIVAACENMISGTG--MRPGDIITAANGKTIE 432 (583)
Q Consensus 399 vnV~~ii~~~ENm~sg~A--~rPGDVvts~~GkTVE 432 (583)
+-|..+ .+|.|...+ ++|||+|.+.||+.|+
T Consensus 43 v~V~~V---~~~spA~~aggL~~GD~Il~vng~~v~ 75 (107)
T 1uhp_A 43 IFVSKI---VDSGPAAKEGGLQIHDRIIEVNGRDLS 75 (107)
T ss_dssp CEEEEE---CSSSHHHHTTCCCSSCEEEEETTEECT
T ss_pred EEEEEe---CCCChHHHcCCCCCCCEEEEECCEECC
Confidence 555544 455555544 9999999999999873
No 129
>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens}
Probab=34.95 E-value=6.3 Score=33.60 Aligned_cols=27 Identities=22% Similarity=0.385 Sum_probs=19.8
Q ss_pred eecccCCCCCC--CCCCcEEEccCCcEEE
Q 007947 406 AACENMISGTG--MRPGDIITAANGKTIE 432 (583)
Q Consensus 406 ~~~ENm~sg~A--~rPGDVvts~~GkTVE 432 (583)
-..+|.|...+ .+|||+|.+.||+.|+
T Consensus 55 ~V~~~spA~~aG~l~~GD~Il~ing~~v~ 83 (117)
T 2o2t_A 55 EIQEGSVAHRDGRLKETDQILAINGQALD 83 (117)
T ss_dssp CCCTTSHHHHHCCCCTTCEEEEETTEECC
T ss_pred EECCCCHHHHCCCCCCCCEEEEECCEECC
Confidence 33455554433 8999999999998874
No 130
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A
Probab=34.54 E-value=6.1 Score=32.50 Aligned_cols=31 Identities=16% Similarity=0.289 Sum_probs=21.3
Q ss_pred eEEEEEEeecccCCCCCC--CCCCcEEEccCCcEEE
Q 007947 399 VEVHFIVAACENMISGTG--MRPGDIITAANGKTIE 432 (583)
Q Consensus 399 vnV~~ii~~~ENm~sg~A--~rPGDVvts~~GkTVE 432 (583)
+-|..+. +|.|...+ ++|||+|.+.||+.|+
T Consensus 32 ~~V~~V~---~~spA~~aG~l~~GD~I~~vng~~v~ 64 (97)
T 1n7e_A 32 IIISSLT---KGGLAERTGAIHIGDRILAINSSSLK 64 (97)
T ss_dssp CEEEEEC---TTSHHHHHTCCCTTCEEEEETTEECT
T ss_pred EEEEEEC---CCCHHHHCCCCCCCCEEEEECCEECC
Confidence 5555553 44444332 8999999999998764
No 131
>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A
Probab=34.52 E-value=7.8 Score=32.37 Aligned_cols=31 Identities=13% Similarity=0.343 Sum_probs=21.4
Q ss_pred eEEEEEEeecccCCCCCC--CCCCcEEEccCCcEEE
Q 007947 399 VEVHFIVAACENMISGTG--MRPGDIITAANGKTIE 432 (583)
Q Consensus 399 vnV~~ii~~~ENm~sg~A--~rPGDVvts~~GkTVE 432 (583)
+-|..+ .+|.|...+ ++|||+|.+.||+.|+
T Consensus 40 v~V~~V---~~~spA~~aG~L~~GD~I~~ing~~v~ 72 (106)
T 3axa_A 40 IYVKSV---VKGGAADVDGRLAAGDQLLSVDGRSLV 72 (106)
T ss_dssp EEEEEE---BTTSHHHHHCCCCTTCEEEEETTEECT
T ss_pred EEEEEE---CCCCHHHHcCCCCCCCEEEEECCEECC
Confidence 444444 445554333 8999999999999875
No 132
>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=34.51 E-value=9.4 Score=31.97 Aligned_cols=31 Identities=23% Similarity=0.369 Sum_probs=22.0
Q ss_pred eEEEEEEeecccCCCCCC--CCCCcEEEccCCcEEE
Q 007947 399 VEVHFIVAACENMISGTG--MRPGDIITAANGKTIE 432 (583)
Q Consensus 399 vnV~~ii~~~ENm~sg~A--~rPGDVvts~~GkTVE 432 (583)
+-|..+ .+|.|...+ ++|||+|.+.||+.|+
T Consensus 44 v~V~~V---~~~spA~~aG~L~~GD~I~~vng~~v~ 76 (108)
T 1q7x_A 44 IYVKAV---IPQGAAESDGRIHKGDRVLAVNGVSLE 76 (108)
T ss_dssp CBEEEE---CTTSTHHHHTCCCSSCEEEEETTEECB
T ss_pred EEEEEE---CCCChHHHCCCCCCCCEEEEECCEECC
Confidence 555554 345554333 9999999999998875
No 133
>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.38 E-value=11 Score=32.39 Aligned_cols=31 Identities=29% Similarity=0.420 Sum_probs=21.7
Q ss_pred eEEEEEEeecccCCCCCC--CCCCcEEEccCCcEEE
Q 007947 399 VEVHFIVAACENMISGTG--MRPGDIITAANGKTIE 432 (583)
Q Consensus 399 vnV~~ii~~~ENm~sg~A--~rPGDVvts~~GkTVE 432 (583)
+-|..+. +|.|...+ ++|||+|.+.||+.|+
T Consensus 49 v~V~~V~---~~spA~~aG~L~~GD~Il~vng~~v~ 81 (120)
T 2eno_A 49 IYVSRIK---ENGAAALDGRLQEGDKILSVNGQDLK 81 (120)
T ss_dssp EEEEEEC---SSSHHHHSCCSCTTCEEEEETTEECC
T ss_pred EEEEEEC---CCChHHHCCCCCCCCEEEEECCEECC
Confidence 5555553 45444333 8999999999998774
No 134
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A
Probab=34.27 E-value=10 Score=30.03 Aligned_cols=31 Identities=16% Similarity=0.376 Sum_probs=21.1
Q ss_pred eEEEEEEeecccCCCC-CCCCCCcEEEccCCcEEE
Q 007947 399 VEVHFIVAACENMISG-TGMRPGDIITAANGKTIE 432 (583)
Q Consensus 399 vnV~~ii~~~ENm~sg-~A~rPGDVvts~~GkTVE 432 (583)
+-|..+. +|.|.. ..++|||+|.+.||+.|+
T Consensus 27 v~V~~V~---~~spA~~aGl~~GD~I~~vng~~v~ 58 (85)
T 1rgw_A 27 LTISRIT---PGSKAAQSQLSQGDLVVAIDGVNTD 58 (85)
T ss_dssp CBEEEEC---TTSHHHHSSCCCCSBEEEETTEECT
T ss_pred eEEEEEC---CCCHHHHcCCCCCCEEEEECCEECC
Confidence 5565554 333332 249999999999998764
No 135
>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1
Probab=34.10 E-value=7.8 Score=33.46 Aligned_cols=25 Identities=28% Similarity=0.493 Sum_probs=18.1
Q ss_pred cccCCCCCC--CCCCcEEEccCCcEEE
Q 007947 408 CENMISGTG--MRPGDIITAANGKTIE 432 (583)
Q Consensus 408 ~ENm~sg~A--~rPGDVvts~~GkTVE 432 (583)
.+|.|...+ .+|||+|.+-||+.|+
T Consensus 61 ~~~spA~~aG~L~~GD~Il~Vng~~v~ 87 (117)
T 2fne_A 61 FAKGAASEDGRLKRGDQIIAVNGQSLE 87 (117)
T ss_dssp CTTSHHHHHCCCCTTCEEEEETTEECT
T ss_pred CCCChHHHcCCCCCCCEEEEECCEECC
Confidence 345444322 9999999999998764
No 136
>3n5f_A L-carbamoylase, N-carbamoyl-L-amino acid hydrolase; hinge domain, M20 peptidase family, evolution, residue, dimerization domain; 2.75A {Bacillus stearothermophilus}
Probab=34.01 E-value=1.9e+02 Score=29.50 Aligned_cols=105 Identities=11% Similarity=0.007 Sum_probs=60.2
Q ss_pred HHHHHHhhcCCCCC--------CChHH--HHHHHHHHhhhcCCceEEEEeCHHHHHHcCCCchhhhcccCCC-CCeEEEE
Q 007947 266 VIFGRELVNSPANV--------LTPAV--LAEEASKVASMYSDVLSATILDIEKCKELKMGSYLGVAAASAN-LPHFIHL 334 (583)
Q Consensus 266 ~~~aRdL~n~P~N~--------ltP~~--~A~~a~~~~~~~~~~~~v~V~d~~~l~~~gmg~llaV~~GS~~-pPrli~l 334 (583)
..+-++|++.|+.. ++..+ .++...+..++++ +++++ | .+|.+++.=+|+.. .|.++..
T Consensus 8 ~~~l~~l~~i~s~~~~g~~r~~~s~~e~~~~~~l~~~l~~~g--~~~~~-d-------~~gnv~a~~~g~~~~~~~i~l~ 77 (408)
T 3n5f_A 8 WQRLMELGEVGKQPSGGVTRLSFTAEERRAKDLVASYMREAG--LFVYE-D-------AAGNLIGRKEGTNPDATVVLVG 77 (408)
T ss_dssp HHHHHHHHTTTBCTTSSBCCCTTSHHHHHHHHHHHHHHHHHT--CEEEE-C-------TTCCEEEEECCSSTTSCEEEEE
T ss_pred HHHHHHHHccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHCC--CEEEE-c-------CCCCEEEEecCCCCCCCEEEEE
Confidence 45678888888722 34443 3455666677775 77776 3 24566666555542 3443333
Q ss_pred EEcCCCCCCCceEEEEecceeecCCCCCCCCCCcccccccccccchHHHHHHHHHHHHhcC--CCceEEEEEEeeccc
Q 007947 335 CYKPPGGSAKIKLALVGKGLTFDSGGYNIKTGPGCLIENMKYDMGGAAAVLGAAKAIGQIK--PPGVEVHFIVAACEN 410 (583)
Q Consensus 335 ~Y~g~~~~~~~~i~LVGKGiTFDsGG~slKp~~~~~M~~MK~DM~GAAaVlga~~aia~lk--lp~vnV~~ii~~~EN 410 (583)
..-- . .. .|| ..+|| +|.|+.+++++.+.+.+ ++ -+|..+.-..|-
T Consensus 78 aH~D-~--v~-------------~~g----------~~d~~---~g~a~~l~~~~~l~~~~~~~~-~~i~~~~~~~EE 125 (408)
T 3n5f_A 78 SHLD-S--VY-------------NGG----------CFDGP---LGVLAGVEVVQTMNEHGVVTH-HPIEVVAFTDEE 125 (408)
T ss_dssp EESC-C--CT-------------TBC----------SSTTH---HHHHHHHHHHHHHHHTTCCCS-SCEEEEEESCSS
T ss_pred ecCC-C--CC-------------CCC----------ccCCH---HHHHHHHHHHHHHHHcCCCCC-CCEEEEEEcCcc
Confidence 2221 0 00 011 12344 68999999999999876 44 566666555553
No 137
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=33.93 E-value=7.7 Score=32.72 Aligned_cols=31 Identities=26% Similarity=0.414 Sum_probs=21.8
Q ss_pred eEEEEEEeecccCCCCCC--CCCCcEEEccCCcEEE
Q 007947 399 VEVHFIVAACENMISGTG--MRPGDIITAANGKTIE 432 (583)
Q Consensus 399 vnV~~ii~~~ENm~sg~A--~rPGDVvts~~GkTVE 432 (583)
+-|..+. +|.|...+ +++||+|.+.||+.|+
T Consensus 40 ~~V~~V~---~~spA~~aG~l~~GD~I~~vng~~v~ 72 (111)
T 2dlu_A 40 VVVRTIV---PGGLADRDGRLQTGDHILKIGGTNVQ 72 (111)
T ss_dssp BEEEEEC---TTSSHHHHTCCCSSCEEEEESSCCCT
T ss_pred EEEEEEC---CCCHHHHcCCCCCCCEEEEECCEECC
Confidence 5555553 45554433 8999999999998775
No 138
>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens}
Probab=33.89 E-value=7.9 Score=33.53 Aligned_cols=45 Identities=13% Similarity=0.183 Sum_probs=29.0
Q ss_pred eEEEEEEeecccCCCCCC--CCCCcEEEccCCcEEEeecCCccCceehhhhhhHHHhc
Q 007947 399 VEVHFIVAACENMISGTG--MRPGDIITAANGKTIEVNNTDAEGRLTLADALIYACNQ 454 (583)
Q Consensus 399 vnV~~ii~~~ENm~sg~A--~rPGDVvts~~GkTVEV~NTDAEGRLvLADaL~Ya~~~ 454 (583)
+-|..+. +|.|...+ ++|||+|.+-||+.|+ | +.+.|+..+.++.
T Consensus 60 v~V~~V~---~gspA~~aG~L~~GD~Il~Ing~~v~--~------~~~~~~~~~l~~~ 106 (121)
T 2kom_A 60 IYVKNIL---PRGAAIQDGRLKAGDRLIEVNGVDLV--G------KSQEEVVSLLRST 106 (121)
T ss_dssp EEEEEEC---TTSHHHHHTCCCSSSEEEEETTEECT--T------SCHHHHHHHHHHC
T ss_pred EEEEEEC---CCChHHHcCCCCCCCEEEEECCEEcC--C------CCHHHHHHHHhcC
Confidence 5555553 45554443 8999999999998774 2 2356666554443
No 139
>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens}
Probab=33.88 E-value=12 Score=31.85 Aligned_cols=31 Identities=35% Similarity=0.413 Sum_probs=21.6
Q ss_pred eEEEEEEeecccCCCCC-C-CCCCcEEEccCCcEEE
Q 007947 399 VEVHFIVAACENMISGT-G-MRPGDIITAANGKTIE 432 (583)
Q Consensus 399 vnV~~ii~~~ENm~sg~-A-~rPGDVvts~~GkTVE 432 (583)
+-|..+. +|.|... . ++|||+|.+.||+.|+
T Consensus 51 v~V~~V~---~~spA~~aG~L~~GD~Il~Vng~~v~ 83 (112)
T 2r4h_A 51 LYVLRLA---EDGPAERSGKMRIGDEILEINGETTK 83 (112)
T ss_dssp EEEEEEC---TTSHHHHTTCCCTTCEEEEETTEECT
T ss_pred EEEEEEC---CCChHHHcCCCCCCCEEEEECCEECC
Confidence 5555553 4444433 3 8999999999998774
No 140
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.86 E-value=10 Score=30.92 Aligned_cols=24 Identities=33% Similarity=0.580 Sum_probs=17.7
Q ss_pred ccCCCCC-CCCCCcEEEccCCcEEE
Q 007947 409 ENMISGT-GMRPGDIITAANGKTIE 432 (583)
Q Consensus 409 ENm~sg~-A~rPGDVvts~~GkTVE 432 (583)
+|.|... .++|||+|.+.||+.|+
T Consensus 41 ~~spA~~aGl~~GD~I~~ing~~v~ 65 (94)
T 2eeg_A 41 AGSKAALAALCPGDLIQAINGESTE 65 (94)
T ss_dssp SSSHHHHTTCCTTCEEEEETTEETT
T ss_pred CCCHHHHcCCCCCCEEEEECCEECC
Confidence 4444332 39999999999998764
No 141
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1
Probab=33.70 E-value=12 Score=30.11 Aligned_cols=31 Identities=23% Similarity=0.172 Sum_probs=20.6
Q ss_pred eEEEEEEeecccCCCC-CCCCCCcEEEccCCcEEE
Q 007947 399 VEVHFIVAACENMISG-TGMRPGDIITAANGKTIE 432 (583)
Q Consensus 399 vnV~~ii~~~ENm~sg-~A~rPGDVvts~~GkTVE 432 (583)
+-|..+. +|.|.. ..++|||+|.+.||+.|+
T Consensus 34 v~V~~V~---~~spA~~aGl~~GD~I~~vng~~v~ 65 (91)
T 1m5z_A 34 VYVKNIR---PAGPGDLGGLKPYDRLLQVNHVRTR 65 (91)
T ss_dssp EEEEEEC---TTSHHHHHTCCTTCEEEEETTEECT
T ss_pred EEEEEEC---CCCHHHHcCCCCCCEEEEECCEECC
Confidence 5555553 343322 238999999999998763
No 142
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A*
Probab=33.54 E-value=9.9 Score=31.95 Aligned_cols=32 Identities=22% Similarity=0.328 Sum_probs=22.0
Q ss_pred ceEEEEEEeecccCCCCC-CCCCCcEEEccCCcEEE
Q 007947 398 GVEVHFIVAACENMISGT-GMRPGDIITAANGKTIE 432 (583)
Q Consensus 398 ~vnV~~ii~~~ENm~sg~-A~rPGDVvts~~GkTVE 432 (583)
++-|..+. +|.|... .+++||+|.+.||+.|+
T Consensus 46 gv~V~~V~---~~spA~~aGl~~GD~I~~vng~~v~ 78 (109)
T 1q3o_A 46 LQYLESVD---EGGVAWRAGLRMGDFLIEVNGQNVV 78 (109)
T ss_dssp SEEEEEEC---TTSHHHHTTCCTTCEEEEETTEECT
T ss_pred CEEEEEEC---CCCHHHHcCCCCCCEEEEECCEECC
Confidence 46666554 3444322 39999999999998773
No 143
>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=33.29 E-value=8.3 Score=32.32 Aligned_cols=26 Identities=15% Similarity=0.231 Sum_probs=19.2
Q ss_pred ecccCCCCCC--CCCCcEEEccCCcEEE
Q 007947 407 ACENMISGTG--MRPGDIITAANGKTIE 432 (583)
Q Consensus 407 ~~ENm~sg~A--~rPGDVvts~~GkTVE 432 (583)
..+|.|...+ ++|||+|.+.||+.|+
T Consensus 47 V~~~spA~~aG~L~~GD~I~~vng~~v~ 74 (107)
T 1wf8_A 47 VTEGGAAQRDGRIQVNDQIVEVDGISLV 74 (107)
T ss_dssp ECTTCHHHHHCSSCTTCBEEEETTEECB
T ss_pred eCCCCHHHHcCCCCCCCEEEEECCEECC
Confidence 3455444333 8999999999999875
No 144
>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=33.21 E-value=8.2 Score=32.46 Aligned_cols=32 Identities=19% Similarity=0.328 Sum_probs=21.8
Q ss_pred ceEEEEEEeecccCCCCCC--CCCCcEEEccCCcEEE
Q 007947 398 GVEVHFIVAACENMISGTG--MRPGDIITAANGKTIE 432 (583)
Q Consensus 398 ~vnV~~ii~~~ENm~sg~A--~rPGDVvts~~GkTVE 432 (583)
++-|..+ .+|.|...+ ++|||+|.+.||+.|+
T Consensus 37 gv~V~~V---~~~spA~~aG~L~~GD~I~~vng~~v~ 70 (110)
T 1um1_A 37 GLYIQTL---LPGSPAAADGRLSLGDRILEVNGSSLL 70 (110)
T ss_dssp SEEEEEE---CTTSHHHHHSCCCTTCEEEEESSCBCS
T ss_pred CEEEEEE---CCCChHHHcCCCCCCCEEEEECCEECC
Confidence 3555554 344444332 8999999999998775
No 145
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Probab=33.16 E-value=9.1 Score=31.11 Aligned_cols=27 Identities=22% Similarity=0.332 Sum_probs=21.0
Q ss_pred eecccCCCCC-C-CCCCcEEEccCCcEEE
Q 007947 406 AACENMISGT-G-MRPGDIITAANGKTIE 432 (583)
Q Consensus 406 ~~~ENm~sg~-A-~rPGDVvts~~GkTVE 432 (583)
...+|.|... + .+|||+|.+-||+.|+
T Consensus 31 ~V~~gspA~~~agL~~GD~I~~Ing~~v~ 59 (88)
T 1kwa_A 31 RIMHGGMIHRQGTLHVGDEIREINGISVA 59 (88)
T ss_dssp EECTTSHHHHHTCCCTTCEEEEETTEEGG
T ss_pred EECCCCHHHHcCCCCCCCEEEEECCEECC
Confidence 3456766665 4 8999999999998775
No 146
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.01 E-value=12 Score=30.48 Aligned_cols=26 Identities=27% Similarity=0.503 Sum_probs=20.2
Q ss_pred eecccCCCCC-C-CCCCcEEEccCCcEE
Q 007947 406 AACENMISGT-G-MRPGDIITAANGKTI 431 (583)
Q Consensus 406 ~~~ENm~sg~-A-~rPGDVvts~~GkTV 431 (583)
-..+|.|... + .+|||+|.+-||+.|
T Consensus 35 ~V~~~spA~~ag~L~~GD~I~~ing~~v 62 (91)
T 2e7k_A 35 RILHGGMVAQQGLLHVGDIIKEVNGQPV 62 (91)
T ss_dssp EECSSSHHHHHCCCCTTCEEEEETTEEC
T ss_pred EECCCCHHHHcCCCCCCCEEEEECCEEC
Confidence 3455666665 3 899999999999987
No 147
>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A
Probab=32.97 E-value=10 Score=33.09 Aligned_cols=31 Identities=23% Similarity=0.317 Sum_probs=21.5
Q ss_pred eEEEEEEeecccCCCCC-CCCCCcEEEccCCcEEE
Q 007947 399 VEVHFIVAACENMISGT-GMRPGDIITAANGKTIE 432 (583)
Q Consensus 399 vnV~~ii~~~ENm~sg~-A~rPGDVvts~~GkTVE 432 (583)
+-|..+. +|.|... ..+|||+|.+.||+.|+
T Consensus 53 v~V~~V~---~gspA~~aGL~~GD~Il~Vng~~v~ 84 (124)
T 3tsv_A 53 IFVAGVL---EDSPAAKEGLEEGDQILRVNNVDFT 84 (124)
T ss_dssp EEEEEEC---TTCHHHHTTCCTTEEEEEETTEECS
T ss_pred EEEEEEC---CCCHHHHcCCCCCCEEEEECCEECC
Confidence 6665554 3444332 39999999999998764
No 148
>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} SCOP: b.36.1.1 PDB: 3nfl_A 2vph_A
Probab=32.88 E-value=10 Score=31.58 Aligned_cols=26 Identities=19% Similarity=0.327 Sum_probs=19.7
Q ss_pred ecccCCCCCC---CCCCcEEEccCCcEEE
Q 007947 407 ACENMISGTG---MRPGDIITAANGKTIE 432 (583)
Q Consensus 407 ~~ENm~sg~A---~rPGDVvts~~GkTVE 432 (583)
..+|.|...+ +++||+|.+.||+.|+
T Consensus 50 V~~~spA~~aG~rL~~GD~Il~ing~~v~ 78 (107)
T 3nfk_A 50 VAPGTPADLCVPRLNEGDQVVLINGRDIA 78 (107)
T ss_dssp ECTTSHHHHSSSCCCTTCEEEEETTEECT
T ss_pred ECCCCchHHcCCccCCCCEEEEECCEECC
Confidence 4556665444 9999999999998654
No 149
>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=32.84 E-value=8.4 Score=33.32 Aligned_cols=31 Identities=19% Similarity=0.274 Sum_probs=21.5
Q ss_pred eEEEEEEeecccCCCCCC--CCCCcEEEccCCcEEE
Q 007947 399 VEVHFIVAACENMISGTG--MRPGDIITAANGKTIE 432 (583)
Q Consensus 399 vnV~~ii~~~ENm~sg~A--~rPGDVvts~~GkTVE 432 (583)
+-|..+ .+|.|...+ +++||+|.+.||+.|+
T Consensus 46 v~V~~V---~~~spA~~aG~L~~GD~Il~Vng~~v~ 78 (123)
T 1ueq_A 46 LQVKSV---IPDGPAAQDGKMETGDVIVYINEVCVL 78 (123)
T ss_dssp CEEEEE---CTTSHHHHTSCCCTTCEEEEETTEECT
T ss_pred EEEEEE---CCCCHHHHCCCCCCCCEEEEECCEECC
Confidence 555544 345444433 9999999999998774
No 150
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1
Probab=32.59 E-value=13 Score=30.12 Aligned_cols=16 Identities=19% Similarity=0.349 Sum_probs=14.4
Q ss_pred CCCCcEEEccCCcEEE
Q 007947 417 MRPGDIITAANGKTIE 432 (583)
Q Consensus 417 ~rPGDVvts~~GkTVE 432 (583)
+++||+|.+.||+.|+
T Consensus 42 l~~GD~I~~vng~~v~ 57 (91)
T 2f5y_A 42 LQQLDTVLQLNERPVE 57 (91)
T ss_dssp CCTTCEEEEETTEECT
T ss_pred CCCCCEEEEECCEECC
Confidence 8999999999998764
No 151
>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}
Probab=32.58 E-value=26 Score=28.34 Aligned_cols=25 Identities=28% Similarity=0.442 Sum_probs=18.0
Q ss_pred cccCCCCCC--CCCCcEEEccCCcEEE
Q 007947 408 CENMISGTG--MRPGDIITAANGKTIE 432 (583)
Q Consensus 408 ~ENm~sg~A--~rPGDVvts~~GkTVE 432 (583)
.+|.|...+ .++||+|.+-||+.|+
T Consensus 29 ~~gspA~~aG~L~~GD~Il~ing~~v~ 55 (88)
T 3e17_A 29 TRTGLATKDGNLHEGDIILKINGTVTE 55 (88)
T ss_dssp CTTSHHHHHCCCCTTCEEEEETTEECT
T ss_pred CCCCHHHHcCCCCCCCEEEEECCEECC
Confidence 344444332 9999999999998764
No 152
>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.36 E-value=6.1 Score=32.86 Aligned_cols=31 Identities=19% Similarity=0.419 Sum_probs=21.5
Q ss_pred eEEEEEEeecccCCCCC-C-CCCCcEEEccCCcEEE
Q 007947 399 VEVHFIVAACENMISGT-G-MRPGDIITAANGKTIE 432 (583)
Q Consensus 399 vnV~~ii~~~ENm~sg~-A-~rPGDVvts~~GkTVE 432 (583)
+-|..+. +|.|... . ++|||+|.+.||+.|+
T Consensus 40 v~V~~V~---~~spA~~aG~l~~GD~I~~vng~~v~ 72 (104)
T 2djt_A 40 LAVRGLL---KDGPAQRCGRLEVGDLVLHINGESTQ 72 (104)
T ss_dssp CEEEEEC---TTCHHHHHCSCCTTCBEEEETTEECT
T ss_pred EEEEEEC---CCCHHHHcCCCCCCCEEEEECCEECC
Confidence 5555553 4444433 2 8999999999998763
No 153
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=32.28 E-value=37 Score=27.11 Aligned_cols=39 Identities=21% Similarity=0.315 Sum_probs=29.0
Q ss_pred EEEEEEeecccCCCC--CCCCCCcEEEccCCcEEEeecCCcc-Cceehh
Q 007947 400 EVHFIVAACENMISG--TGMRPGDIITAANGKTIEVNNTDAE-GRLTLA 445 (583)
Q Consensus 400 nV~~ii~~~ENm~sg--~A~rPGDVvts~~GkTVEV~NTDAE-GRLvLA 445 (583)
++-|+++..| +... ..+++||.|+ +.|.+.|.+ ||+-|.
T Consensus 28 ~~~Gllh~se-l~~~~~~~~~~Gd~V~------v~V~~vd~~~~~i~ls 69 (80)
T 2k52_A 28 QVRGLLRPRD-MISLRLENLNVGDEII------VQAIDVRPEKREIDFK 69 (80)
T ss_dssp TEEEEECGGG-CSSCCGGGCCTTCEEE------EEEEEEETTTTEEEEE
T ss_pred CCEEEEEHHH-CCcccceeeCCCCEEE------EEEEEEECCCCEEEEE
Confidence 3668888887 3322 3799999994 788898887 998763
No 154
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=32.15 E-value=8.2 Score=32.25 Aligned_cols=31 Identities=23% Similarity=0.309 Sum_probs=21.1
Q ss_pred eEEEEEEeecccCCCCCC--CCCCcEEEccCCcEEE
Q 007947 399 VEVHFIVAACENMISGTG--MRPGDIITAANGKTIE 432 (583)
Q Consensus 399 vnV~~ii~~~ENm~sg~A--~rPGDVvts~~GkTVE 432 (583)
+-|..+ .+|.|...+ ++|||+|.+.||+.|+
T Consensus 40 v~V~~V---~~~spA~~aG~L~~GD~I~~vng~~v~ 72 (105)
T 1wha_A 40 IFVSRI---AEGGAAHRAGTLQVGDRVLSINGVDVT 72 (105)
T ss_dssp CEEEEC---CTTSSHHHHSSCCTTCEEEEESSCBCT
T ss_pred EEEEEe---CCCCHHHHcCCCCCCCEEEEECCEECC
Confidence 555444 345554332 8999999999998764
No 155
>3qe1_A Sorting nexin-27, G protein-activated inward RECT potassium channel 3 chimera; PDZ domain, PDZ binding, GIRK3 regulation, early endosomes; 1.68A {Rattus norvegicus} SCOP: b.36.1.0 PDB: 3qdo_A 3qgl_A
Probab=31.94 E-value=9.4 Score=31.87 Aligned_cols=26 Identities=27% Similarity=0.373 Sum_probs=19.3
Q ss_pred ecccCCCCCC-CCCCcEEEccCCcEEE
Q 007947 407 ACENMISGTG-MRPGDIITAANGKTIE 432 (583)
Q Consensus 407 ~~ENm~sg~A-~rPGDVvts~~GkTVE 432 (583)
..+|.|...+ +++||+|.+.||+.|.
T Consensus 50 v~~~spA~~aGl~~GD~I~~ing~~v~ 76 (107)
T 3qe1_A 50 VLPGGAADRAGVRKGDRILEVNGVNVE 76 (107)
T ss_dssp ECTTSHHHHHTCCTTCEEEEETTEECT
T ss_pred ECCCCHHHHcCCCCCCEEEEECCEECC
Confidence 3455554433 9999999999998864
No 156
>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A
Probab=31.81 E-value=9.9 Score=32.14 Aligned_cols=32 Identities=22% Similarity=0.403 Sum_probs=21.6
Q ss_pred eEEEEEEeecccCCCCC-CCCCCcEEEccCCcEEEe
Q 007947 399 VEVHFIVAACENMISGT-GMRPGDIITAANGKTIEV 433 (583)
Q Consensus 399 vnV~~ii~~~ENm~sg~-A~rPGDVvts~~GkTVEV 433 (583)
+.|..+ .+|.|... ..|+||+|..-||+.|+=
T Consensus 37 ~~V~~V---~~~spA~~aGL~~GD~Il~vng~~v~~ 69 (94)
T 3kzd_A 37 LYVNSV---KETGLASKKGLKAGDEILEINNRAADA 69 (94)
T ss_dssp EEEEEE---CTTSHHHHTTCCTTCEEEEETTEEGGG
T ss_pred eEEEEE---CCCCHHHHcCCCCCCEEEEECCEECCC
Confidence 444444 34444333 399999999999998753
No 157
>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.36.1.1 PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A
Probab=31.73 E-value=10 Score=31.33 Aligned_cols=31 Identities=26% Similarity=0.413 Sum_probs=21.3
Q ss_pred eEEEEEEeecccCCCCCC--CCCCcEEEccCCcEEE
Q 007947 399 VEVHFIVAACENMISGTG--MRPGDIITAANGKTIE 432 (583)
Q Consensus 399 vnV~~ii~~~ENm~sg~A--~rPGDVvts~~GkTVE 432 (583)
+-|..+ .+|.|...| ++|||+|.+.||+.|+
T Consensus 37 v~V~~V---~~~spA~~aG~l~~GD~I~~vng~~v~ 69 (104)
T 3i4w_A 37 IFISFI---LAGGPADLSGELRKGDQILSVNGVDLR 69 (104)
T ss_dssp EEEEEE---CTTSHHHHHCCCCTTEEEEEETTEECT
T ss_pred EEEEEE---CCCChHHhcCCCCCCCEEEEECCEECC
Confidence 555544 345444333 9999999999998763
No 158
>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens}
Probab=31.69 E-value=8.6 Score=31.16 Aligned_cols=31 Identities=26% Similarity=0.425 Sum_probs=21.4
Q ss_pred eEEEEEEeecccCCCCC-C-CCCCcEEEccCCcEEE
Q 007947 399 VEVHFIVAACENMISGT-G-MRPGDIITAANGKTIE 432 (583)
Q Consensus 399 vnV~~ii~~~ENm~sg~-A-~rPGDVvts~~GkTVE 432 (583)
+-|..+. +|.|... . ++|||+|.+.||+.|+
T Consensus 35 ~~V~~v~---~~s~A~~aG~l~~GD~I~~vng~~v~ 67 (97)
T 2iwn_A 35 IFVKSIT---KSSAVEHDGRIQIGDQIIAVDGTNLQ 67 (97)
T ss_dssp CEEEEEC---TTCHHHHHCCCCTTCEEEEETTEECT
T ss_pred EEEEEeC---CCChHHhCCCCCCCCEEEEECCEECC
Confidence 5555554 4444333 2 9999999999998764
No 159
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1
Probab=31.55 E-value=16 Score=32.32 Aligned_cols=48 Identities=17% Similarity=0.299 Sum_probs=29.5
Q ss_pred eecccCCCCCC--CCCCcEEEccCCcEEEeecCCccCceehhhhhhHHHhcCCCeEEE
Q 007947 406 AACENMISGTG--MRPGDIITAANGKTIEVNNTDAEGRLTLADALIYACNQGVDKVID 461 (583)
Q Consensus 406 ~~~ENm~sg~A--~rPGDVvts~~GkTVEV~NTDAEGRLvLADaL~Ya~~~~p~~iID 461 (583)
-..+|.|...| ++|||+|.+.||+.|+ + .-..|+..+-++.+|..-|.
T Consensus 55 ~V~~gspA~~aG~L~~GD~Il~VnG~~v~--~------~s~~d~~~~l~~~~~G~~v~ 104 (126)
T 1wif_A 55 HLINKGAAASDGILQPGDVLISVGHANVL--G------YTLREFLKLLQNITIGTVLQ 104 (126)
T ss_dssp CCCTTSSGGGCSSSCTTCBEEEESSSCCT--T------CCHHHHHHHHTSCCSSCEEE
T ss_pred EECCCCHHHHcCCCCCCCEEEEECCEEcC--C------CCHHHHHHHHhcCCCCCEEE
Confidence 44566666544 8999999999998653 1 12346655555444443333
No 160
>3o4v_A MTA/SAH nucleosidase; mixed alpha/beta dimer, hydrolase; HET: 4CT; 1.75A {Escherichia coli} SCOP: c.56.2.1 PDB: 1jys_A* 1nc1_A* 1nc3_A* 1y6q_A* 1y6r_A* 1z5p_A* 3df9_A* 1z5n_A* 1z5o_A* 4g89_A*
Probab=31.38 E-value=2.2e+02 Score=26.80 Aligned_cols=91 Identities=23% Similarity=0.238 Sum_probs=52.8
Q ss_pred cchHHHHHHHHHHHHhcCCCceEEEEEEeecccCCCCCCCCCCcEEEccCCcEEEeecCCccCceehhhhhhHHHhcCCC
Q 007947 378 MGGAAAVLGAAKAIGQIKPPGVEVHFIVAACENMISGTGMRPGDIITAANGKTIEVNNTDAEGRLTLADALIYACNQGVD 457 (583)
Q Consensus 378 M~GAAaVlga~~aia~lklp~vnV~~ii~~~ENm~sg~A~rPGDVvts~~GkTVEV~NTDAEGRLvLADaL~Ya~~~~p~ 457 (583)
|+...+.+.+-+.+.++++..+=.+|+.+.-. ..++|||||-+. ++.|-|.+++ .+.|...+-|.
T Consensus 52 iG~~~aa~~~~~li~~~~~~~iI~~G~aG~l~-----~~~~~GDvvi~~-----~~~~~d~~~~-----~~~~~~g~~p~ 116 (234)
T 3o4v_A 52 IGKVAAALGATLLLEHCKPDVIINTGSAGGLA-----PTLKVGDIVVSD-----EARYHDADVT-----AFGYEYGQLPG 116 (234)
T ss_dssp SSHHHHHHHHHHHHHHHCCSEEEEEEEEEECS-----TTCCTTCEEEEE-----EEEESSCBCG-----GGTCCTTCCTT
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEEEEEEeccC-----CCCCCCcEEEEC-----eEEEcccCCc-----ccCCccCcCCC
Confidence 45556666666777788765333334433322 258999999876 4666665432 11222111121
Q ss_pred eEEEecchhHHHHHhhCCCeEEEeeCCHHHHHHHHHHHHHhCCce
Q 007947 458 KVIDLATLTGACVVALGPSVAGAFTPSDDLANEVMAASQVSGEKI 502 (583)
Q Consensus 458 ~iIDiATLTGA~~vALG~~~agvfsn~~~l~~~l~~ag~~~gE~~ 502 (583)
. .-.|..|.+|.+.+.++.+..|-++
T Consensus 117 ~-------------------~~~~~~d~~L~~~~~~~~~~~~~~~ 142 (234)
T 3o4v_A 117 C-------------------PAGFKADDKLIAAAEACIAELNLNA 142 (234)
T ss_dssp S-------------------CSSEECCHHHHHHHHHHHHHTTCCE
T ss_pred C-------------------CccccCCHHHHHHHHHHHHhcCCCe
Confidence 0 1125678999999999988765443
No 161
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=31.27 E-value=7.9 Score=32.35 Aligned_cols=31 Identities=16% Similarity=0.324 Sum_probs=21.0
Q ss_pred eEEEEEEeecccCCCCC-CCCCCcEEEccCCcEEE
Q 007947 399 VEVHFIVAACENMISGT-GMRPGDIITAANGKTIE 432 (583)
Q Consensus 399 vnV~~ii~~~ENm~sg~-A~rPGDVvts~~GkTVE 432 (583)
+-|..+. +|.|... .++|||+|.+.||+.|+
T Consensus 43 ~~V~~V~---~~spA~~aGL~~GD~I~~ing~~v~ 74 (104)
T 1wi2_A 43 IFISKVI---PDSDAHRAGLQEGDQVLAVNDVDFQ 74 (104)
T ss_dssp CEEEEEC---TTSHHHHHTCCTTCEEEEETTEECS
T ss_pred EEEEEeC---CCChHHHcCCCCCCEEEEECCEECC
Confidence 5565554 3433322 38999999999998763
No 162
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A
Probab=31.15 E-value=11 Score=32.30 Aligned_cols=31 Identities=29% Similarity=0.515 Sum_probs=21.3
Q ss_pred eEEEEEEeecccCCCCC-C-CCCCcEEEccCCcEEE
Q 007947 399 VEVHFIVAACENMISGT-G-MRPGDIITAANGKTIE 432 (583)
Q Consensus 399 vnV~~ii~~~ENm~sg~-A-~rPGDVvts~~GkTVE 432 (583)
+-|..+. +|.|... . ++|||+|.+-||+.|+
T Consensus 52 ~~V~~V~---~gspA~~aG~L~~GD~I~~Ing~~v~ 84 (114)
T 2gzv_A 52 LYIVQVF---DNTPAALDGTVAAGDEITGVNGRSIK 84 (114)
T ss_dssp EEEEEEC---TTSHHHHHCCCCTTCEEEEETTEECT
T ss_pred EEEEEEC---CCChHHHCCCCCCCCEEEEECCEECC
Confidence 5555543 4444432 2 9999999999998774
No 163
>1ylo_A Hypothetical protein SF2450; structural genomics, MCSG, PSI, structure initiative; 2.15A {Shigella flexneri 2a str} SCOP: b.49.3.1 c.56.5.4
Probab=31.00 E-value=3.4e+02 Score=26.82 Aligned_cols=59 Identities=15% Similarity=0.061 Sum_probs=39.4
Q ss_pred HHHHHhhcCCCCCCChHHHHHHHHHHhhhcCCceEEEEeCHHHHHHcCCCchhhhcccCCCCCeEEEEEE
Q 007947 267 IFGRELVNSPANVLTPAVLAEEASKVASMYSDVLSATILDIEKCKELKMGSYLGVAAASANLPHFIHLCY 336 (583)
Q Consensus 267 ~~aRdL~n~P~N~ltP~~~A~~a~~~~~~~~~~~~v~V~d~~~l~~~gmg~llaV~~GS~~pPrli~l~Y 336 (583)
.+-++|++.|+---.-..+++..++..++++ +++++ | .+|.+++.-.|+ ..|+++...+
T Consensus 7 ~~l~~Lv~~~s~sg~e~~~~~~l~~~l~~~g--~~v~~-d-------~~gnlia~~~g~-~~~~vll~aH 65 (348)
T 1ylo_A 7 SLLKALSEADAIASSEQEVRQILLEEAARLQ--KEVRF-D-------GLGSVLIRLNES-TGPKVMICAH 65 (348)
T ss_dssp HHHHHHHHSCCBTTBCHHHHHHHHHHHHHTT--CCEEE-C-------TTCCEEEECCCC-SSCEEEEEEE
T ss_pred HHHHHHHcCCCCCCchHHHHHHHHHHHHhhC--CEEEE-e-------cCCCEEEEecCC-CCceEEEEEc
Confidence 5788999999865555678888888888875 66664 3 356677765565 3355444433
No 164
>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A
Probab=30.74 E-value=9.1 Score=32.66 Aligned_cols=31 Identities=29% Similarity=0.515 Sum_probs=21.3
Q ss_pred eEEEEEEeecccCCCCC-C-CCCCcEEEccCCcEEE
Q 007947 399 VEVHFIVAACENMISGT-G-MRPGDIITAANGKTIE 432 (583)
Q Consensus 399 vnV~~ii~~~ENm~sg~-A-~rPGDVvts~~GkTVE 432 (583)
+-|..+. +|.|... . ++|||+|.+.||+.|+
T Consensus 40 v~V~~V~---~~spA~~aG~L~~GD~I~~vng~~v~ 72 (119)
T 1tp5_A 40 IFISFIL---AGGPADLSGELRKGDQILSVNGVDLR 72 (119)
T ss_dssp EEEEEEC---TTSHHHHHSCCCTTEEEEEETTEECT
T ss_pred EEEEEEC---CCCHHHHcCCCCCCCEEEEECCEECC
Confidence 5555553 3444333 2 8999999999998763
No 165
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=30.68 E-value=14 Score=31.26 Aligned_cols=30 Identities=27% Similarity=0.388 Sum_probs=22.6
Q ss_pred eEEEEEEeecccCCCCC--CCCCCcEEEccCCcEE
Q 007947 399 VEVHFIVAACENMISGT--GMRPGDIITAANGKTI 431 (583)
Q Consensus 399 vnV~~ii~~~ENm~sg~--A~rPGDVvts~~GkTV 431 (583)
+-|..+ .+|.|... .++|||+|.+.||+.|
T Consensus 45 ~~V~~V---~~~spA~~~agL~~GD~I~~ing~~v 76 (114)
T 1uew_A 45 HKIGRI---IDGSPADRCAKLKVGDRILAVNGQSI 76 (114)
T ss_dssp CEEEEE---CTTCTTGGGSSCCTTCBEEEETTBCT
T ss_pred eEEEEE---CCCChHHHhCCCCCCCEEEEECCEEC
Confidence 555544 45777665 5899999999999876
No 166
>1v1h_A Fibritin, fiber protein; chimera; 1.9A {Human adenovirus type 2} SCOP: b.83.1.1 h.1.17.1 PDB: 1v1i_A
Probab=30.19 E-value=13 Score=32.28 Aligned_cols=9 Identities=56% Similarity=1.158 Sum_probs=3.9
Q ss_pred ecceeecCC
Q 007947 351 GKGLTFDSG 359 (583)
Q Consensus 351 GKGiTFDsG 359 (583)
|-|++||+.
T Consensus 60 G~GLsFDs~ 68 (103)
T 1v1h_A 60 GAGLSFDNS 68 (103)
T ss_dssp CTTCEECTT
T ss_pred cCCeeEcCC
Confidence 444444433
No 167
>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens}
Probab=36.09 E-value=11 Score=32.32 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=20.3
Q ss_pred cccCCCCC--CCCCCcEEEccCCcEEE
Q 007947 408 CENMISGT--GMRPGDIITAANGKTIE 432 (583)
Q Consensus 408 ~ENm~sg~--A~rPGDVvts~~GkTVE 432 (583)
.+|.|... .++|||+|.+-||+.|+
T Consensus 61 ~~~spA~~~aGL~~GD~Il~ING~~v~ 87 (112)
T 2lob_A 61 HPGQPADRCGGLHVGDAILAVNGVNLR 87 (112)
Confidence 45666665 58999999999999885
No 168
>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1
Probab=29.87 E-value=11 Score=32.12 Aligned_cols=31 Identities=13% Similarity=0.178 Sum_probs=22.3
Q ss_pred eEEEEEEeecccCCCCCCCCCCcEEEccCCcEEE
Q 007947 399 VEVHFIVAACENMISGTGMRPGDIITAANGKTIE 432 (583)
Q Consensus 399 vnV~~ii~~~ENm~sg~A~rPGDVvts~~GkTVE 432 (583)
+-|..+ .+|.|....++|||+|.+-||+.|+
T Consensus 48 v~V~~V---~~~spA~~gL~~GD~I~~Vng~~v~ 78 (117)
T 2csj_A 48 IVISDV---LPGGPADGLLQENDRVVMVNGTPME 78 (117)
T ss_dssp CEEEEE---CTTSSHHHHBCTTCEEEEESSCBCB
T ss_pred EEEEEE---CCCCcccccCCCCCEEEEECCEECC
Confidence 555554 3455554458999999999999884
No 169
>2kij_A Copper-transporting ATPase 1; actuator, menkes disease, alternative splicing, ATP-binding, cell membrane, cytoplasm, disease mutation; NMR {Homo sapiens}
Probab=29.84 E-value=51 Score=28.86 Aligned_cols=66 Identities=18% Similarity=0.308 Sum_probs=40.8
Q ss_pred HHHHHHhcCCCceEEEEEEee----cccCCCCCCCCCCcEEEccCCcEEEeecCCccCceehhhhhhHHHhcCCCeEEEe
Q 007947 387 AAKAIGQIKPPGVEVHFIVAA----CENMISGTGMRPGDIITAANGKTIEVNNTDAEGRLTLADALIYACNQGVDKVIDL 462 (583)
Q Consensus 387 a~~aia~lklp~vnV~~ii~~----~ENm~sg~A~rPGDVvts~~GkTVEV~NTDAEGRLvLADaL~Ya~~~~p~~iIDi 462 (583)
++.++.+|.++.++|+=---- .|-.+.-.-.+|||+|.-..|..|= |.||++=. ...||=
T Consensus 8 ~l~~L~~l~p~~a~v~r~g~~~~~~~~~~v~~~~l~~GDiv~v~~G~~iP-----aDg~vi~g-----------~~~vde 71 (124)
T 2kij_A 8 ALAKLISLQATEATIVTLDSDNILLSEEQVDVELVQRGDIIKVVPGGKFP-----VDGRVIEG-----------HSMVDE 71 (124)
T ss_dssp HHHHHHHTCCSEEEEEECSSSTTCCEEEEEETTTCCTTCEEECCTTCBCS-----SCEEECSC-----------CCEEEC
T ss_pred HHHHHhccCCCEEEEEECCCCCceeEEEEEeHHHCCCCCEEEECCCCEEE-----eeEEEEEc-----------cEEEEe
Confidence 466777887764444310000 1223556679999999999886553 34565522 237999
Q ss_pred cchhHH
Q 007947 463 ATLTGA 468 (583)
Q Consensus 463 ATLTGA 468 (583)
+.|||-
T Consensus 72 S~LTGE 77 (124)
T 2kij_A 72 SLITGE 77 (124)
T ss_dssp TTTTCC
T ss_pred ccccCC
Confidence 999985
No 170
>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2
Probab=29.73 E-value=5.8 Score=34.01 Aligned_cols=31 Identities=23% Similarity=0.490 Sum_probs=22.0
Q ss_pred eEEEEEEeecccCCCCCC--CCCCcEEEccCCcEEE
Q 007947 399 VEVHFIVAACENMISGTG--MRPGDIITAANGKTIE 432 (583)
Q Consensus 399 vnV~~ii~~~ENm~sg~A--~rPGDVvts~~GkTVE 432 (583)
+-|..+ .+|.|...| ++|||+|.+.||+.|+
T Consensus 44 v~V~~V---~~~spA~~aG~L~~GD~Il~ing~~v~ 76 (119)
T 1x6d_A 44 ITVHRV---FPNGLASQEGTIQKGNEVLSINGKSLK 76 (119)
T ss_dssp CEEEEE---CSSSHHHHHTSSCTTCBCCEETTEECS
T ss_pred EEEEEE---CCCChHHHcCCCCCCCEEEEECCEECC
Confidence 555554 345554433 8999999999999884
No 171
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A
Probab=29.70 E-value=10 Score=32.85 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=19.1
Q ss_pred cccCCCCC--CCCCCcEEEccCCcEEE
Q 007947 408 CENMISGT--GMRPGDIITAANGKTIE 432 (583)
Q Consensus 408 ~ENm~sg~--A~rPGDVvts~~GkTVE 432 (583)
.+|.|... .+||||+|.+-||+.|+
T Consensus 61 ~~~spA~~aggL~~GD~Il~VnG~~v~ 87 (120)
T 2iwo_A 61 HPTGVAAQTQKLRVGDRIVTICGTSTE 87 (120)
T ss_dssp CTTSHHHHHTCCCTTCEEEEETTEECT
T ss_pred CCCCHHHHhCCCCCCCEEEEECCEECC
Confidence 44555543 58999999999998764
No 172
>4e34_A Golgi-associated PDZ and coiled-coil motif-contai protein; PDZ-peptide complex, protein transport-inhibitor complex; 1.40A {Homo sapiens} PDB: 4e35_A
Probab=29.52 E-value=19 Score=28.67 Aligned_cols=27 Identities=26% Similarity=0.379 Sum_probs=20.2
Q ss_pred eecccCCCC--CCCCCCcEEEccCCcEEE
Q 007947 406 AACENMISG--TGMRPGDIITAANGKTIE 432 (583)
Q Consensus 406 ~~~ENm~sg--~A~rPGDVvts~~GkTVE 432 (583)
-..+|.|.. ...+|||+|.+-||+.|+
T Consensus 34 ~V~~gspA~~~agl~~GD~I~~vng~~v~ 62 (87)
T 4e34_A 34 EIHPGQPADRCGGLHVGDAILAVNGVNLR 62 (87)
T ss_dssp EECTTSHHHHHSCCCTTEEEEEETTEECT
T ss_pred EECCCCHHHhcCCCCCCCEEEEECCEECC
Confidence 344566655 369999999999998764
No 173
>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.20 E-value=9.4 Score=33.07 Aligned_cols=27 Identities=19% Similarity=0.347 Sum_probs=20.1
Q ss_pred eecccCCCCCC-CCCCcEEEccCCcEEE
Q 007947 406 AACENMISGTG-MRPGDIITAANGKTIE 432 (583)
Q Consensus 406 ~~~ENm~sg~A-~rPGDVvts~~GkTVE 432 (583)
-..+|.|...| +||||+|.+.||+.|+
T Consensus 50 ~V~~~spA~~aGL~~GD~Il~Ing~~v~ 77 (114)
T 2d8i_A 50 SVKETGLASKKGLKAGDEILEINNRAAD 77 (114)
T ss_dssp ECCTTSSHHHHTCCTTCCEEEESSCBGG
T ss_pred EeCCCCHHHHcCCCCCCEEEEECCEECC
Confidence 33455555443 9999999999999875
No 174
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=29.17 E-value=7.9 Score=33.03 Aligned_cols=31 Identities=23% Similarity=0.340 Sum_probs=21.1
Q ss_pred eEEEEEEeecccCCCCC-CCCCCcEEEccCCcEEE
Q 007947 399 VEVHFIVAACENMISGT-GMRPGDIITAANGKTIE 432 (583)
Q Consensus 399 vnV~~ii~~~ENm~sg~-A~rPGDVvts~~GkTVE 432 (583)
+-|..+. +|.|... .++|||+|.+.||+.|+
T Consensus 44 v~V~~V~---~~spA~~aGL~~GD~Il~vng~~v~ 75 (117)
T 1uit_A 44 IYVSKVT---VGSIAHQAGLEYGDQLLEFNGINLR 75 (117)
T ss_dssp EEEEEEC---TTSHHHHHTCCTTCEECEETTEETT
T ss_pred EEEEEEC---CCCHHHHcCCCCCCEEEEECCEECC
Confidence 6565554 3433322 29999999999998763
No 175
>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=29.02 E-value=17 Score=29.85 Aligned_cols=24 Identities=38% Similarity=0.484 Sum_probs=17.7
Q ss_pred ccCCCCC-C-CCCCcEEEccCCcEEE
Q 007947 409 ENMISGT-G-MRPGDIITAANGKTIE 432 (583)
Q Consensus 409 ENm~sg~-A-~rPGDVvts~~GkTVE 432 (583)
+|.|... . +++||+|.+.||+.|+
T Consensus 45 ~~spA~~aG~l~~GD~I~~vng~~v~ 70 (103)
T 1wfv_A 45 EDGPAIRNGRMRVGDQIIEINGESTR 70 (103)
T ss_dssp TTSHHHHHCSSCTTCEEEEETTEECS
T ss_pred CCChHHHcCCCCCCCEEEEECCEECC
Confidence 4444433 2 8999999999998764
No 176
>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}
Probab=28.67 E-value=25 Score=38.70 Aligned_cols=34 Identities=18% Similarity=0.262 Sum_probs=25.8
Q ss_pred ceEEEEEEeecccCCCCCCCCCCcEEEccCCcEEEee
Q 007947 398 GVEVHFIVAACENMISGTGMRPGDIITAANGKTIEVN 434 (583)
Q Consensus 398 ~vnV~~ii~~~ENm~sg~A~rPGDVvts~~GkTVEV~ 434 (583)
|+-|..+ .++.|...+.|+||||++.||+.|+..
T Consensus 278 Gv~V~~V---~~~spA~~al~~GDvI~~idg~~V~~~ 311 (539)
T 4fln_A 278 GVLVRRV---EPTSDASKVLKEGDVIVSFDDLHVGCE 311 (539)
T ss_dssp CEEEEEE---CTTSGGGGTCCTTCEEEEETTEECBSS
T ss_pred ceeeecc---cCCChHHhCccCCCEEEEECCEEeCcC
Confidence 4445544 457777778999999999999988643
No 177
>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus}
Probab=28.26 E-value=10 Score=32.07 Aligned_cols=25 Identities=12% Similarity=0.310 Sum_probs=18.3
Q ss_pred cccCCCCCC--CCCCcEEEccCCcEEE
Q 007947 408 CENMISGTG--MRPGDIITAANGKTIE 432 (583)
Q Consensus 408 ~ENm~sg~A--~rPGDVvts~~GkTVE 432 (583)
.+|.|...+ ++|||+|.+-||+.|+
T Consensus 43 ~~~s~A~~aG~l~~GD~I~~vng~~v~ 69 (113)
T 2g5m_B 43 TEGGAAHRDGRIQVNDLLVEVDGTSLV 69 (113)
T ss_dssp CTTSHHHHHTCSCTTCBEEEETTEECS
T ss_pred CCCCHHHHcCCCCCCCEEEEECCEECC
Confidence 344444332 8999999999999875
No 178
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=28.21 E-value=32 Score=36.46 Aligned_cols=27 Identities=33% Similarity=0.490 Sum_probs=21.7
Q ss_pred eecccCCCCCC-CCCCcEEEccCCcEEE
Q 007947 406 AACENMISGTG-MRPGDIITAANGKTIE 432 (583)
Q Consensus 406 ~~~ENm~sg~A-~rPGDVvts~~GkTVE 432 (583)
-..+|.|...| +|+||+|++.||+.|+
T Consensus 269 ~V~~~spA~~aGL~~GD~I~~vnG~~v~ 296 (436)
T 4a8c_A 269 EVLPGSGSAKAGVKAGDIITSLNGKPLN 296 (436)
T ss_pred EECCCChHHHCCCCCCCEEEEECCEECC
Confidence 44567776555 9999999999999875
No 179
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1
Probab=28.01 E-value=17 Score=30.04 Aligned_cols=16 Identities=19% Similarity=0.349 Sum_probs=14.5
Q ss_pred CCCCcEEEccCCcEEE
Q 007947 417 MRPGDIITAANGKTIE 432 (583)
Q Consensus 417 ~rPGDVvts~~GkTVE 432 (583)
++|||+|.+.||+.|+
T Consensus 54 L~~GD~I~~vng~~v~ 69 (100)
T 1whd_A 54 LQQLDTVLQLNERPVE 69 (100)
T ss_dssp CCSSCEEEEETTEECT
T ss_pred CCCCCEEEEECCEECC
Confidence 8999999999998764
No 180
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=27.98 E-value=21 Score=29.29 Aligned_cols=16 Identities=31% Similarity=0.549 Sum_probs=14.8
Q ss_pred CCCCcEEEccCCcEEE
Q 007947 417 MRPGDIITAANGKTIE 432 (583)
Q Consensus 417 ~rPGDVvts~~GkTVE 432 (583)
++|||+|.+.||+.|+
T Consensus 49 L~~GD~Il~Ing~~v~ 64 (90)
T 1y7n_A 49 VRVGHRIIEINGQSVV 64 (90)
T ss_dssp CCSSCEEEEETTEECT
T ss_pred CCCCCEEEEECCEECC
Confidence 8999999999999875
No 181
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Probab=27.82 E-value=12 Score=32.30 Aligned_cols=31 Identities=23% Similarity=0.380 Sum_probs=20.8
Q ss_pred eEEEEEEeecccCCCCC-C-CCCCcEEEccCCcEEE
Q 007947 399 VEVHFIVAACENMISGT-G-MRPGDIITAANGKTIE 432 (583)
Q Consensus 399 vnV~~ii~~~ENm~sg~-A-~rPGDVvts~~GkTVE 432 (583)
+-|..+. +|.|... . ++|||+|.+-||+.|+
T Consensus 56 v~V~~V~---~gspA~~aG~L~~GD~Il~Vng~~v~ 88 (117)
T 2byg_A 56 IYVTKII---DGGAAQKDGRLQVGDRLLMVNNYSLE 88 (117)
T ss_dssp EEEEEEC---TTSHHHHHCCCCTTCEEEEETTEECT
T ss_pred EEEEEEC---CCCHHHHcCCCCCCCEEEEECCEECC
Confidence 5555543 4444332 2 8999999999998774
No 182
>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2
Probab=27.70 E-value=22 Score=30.98 Aligned_cols=44 Identities=23% Similarity=0.303 Sum_probs=29.9
Q ss_pred eEEEEEEeecccCCCCCC--CCCCcEEEccCCcEEEeecCCccCceehhhhhhHHHh
Q 007947 399 VEVHFIVAACENMISGTG--MRPGDIITAANGKTIEVNNTDAEGRLTLADALIYACN 453 (583)
Q Consensus 399 vnV~~ii~~~ENm~sg~A--~rPGDVvts~~GkTVEV~NTDAEGRLvLADaL~Ya~~ 453 (583)
+-|..+ .+|.|...+ +++||+|.+-||+.|+ + +...|+..+.++
T Consensus 59 i~I~~V---~~gs~A~~aggL~~GD~Il~Vng~~v~--~------~~~~~~~~~l~~ 104 (130)
T 1i16_A 59 LTINRI---FKGAASEQSETVQPGDEILQLGGTAMQ--G------LTRFEAWNIIKA 104 (130)
T ss_dssp CEEEEE---CSSCCCSSSCCCCTTCCEEECSSCBGG--G------SCHHHHHHHHHT
T ss_pred EEEEEE---CCCCHHHHcCCCCCCCEEEEECCEECC--C------CCHHHHHHHHHh
Confidence 555444 577777765 9999999999998653 2 245566665544
No 183
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=27.37 E-value=23 Score=31.19 Aligned_cols=32 Identities=22% Similarity=0.328 Sum_probs=21.9
Q ss_pred ceEEEEEEeecccCCCCC-CCCCCcEEEccCCcEEE
Q 007947 398 GVEVHFIVAACENMISGT-GMRPGDIITAANGKTIE 432 (583)
Q Consensus 398 ~vnV~~ii~~~ENm~sg~-A~rPGDVvts~~GkTVE 432 (583)
++-|..+. +|.|... .+|+||+|.+-||+.|+
T Consensus 66 gv~V~~V~---~gspA~~aGL~~GD~Il~Vng~~v~ 98 (132)
T 3l4f_D 66 LQYLESVD---EGGVAWRAGLRMGDFLIEVNGQNVV 98 (132)
T ss_dssp SEEEEEEC---TTSGGGGGTCCTTCEEEEESSSBCT
T ss_pred CEEEEEEC---CCCHHHHcCCCCCCEEEEECCEECC
Confidence 35555553 4444322 29999999999999874
No 184
>3kh6_A Poly [ADP-ribose] polymerase 15; macro, PARP, BAL3, B-aggressive lymphoma protein 3, SGC, structural genomics consortium, alternative splicing; HET: APR; 2.20A {Homo sapiens} PDB: 3v2b_A*
Probab=27.05 E-value=4.1e+02 Score=25.14 Aligned_cols=104 Identities=13% Similarity=0.096 Sum_probs=62.1
Q ss_pred eEEEeecCCcccccccEEEEEEecCCCCCCCCcccchhHHHHHHHHhhHHHHHHHhcCCCCCCCCcEEEEecCCCCccEE
Q 007947 79 ISFAAKEVDVVEWKGDILAVGVTEKDMGKDDNSKFQNSILKKLDAQLGGLLSEASSEEDFTGKAGQSTVIRLPGIGSKRV 158 (583)
Q Consensus 79 ~~~~~~~~~~~~~~~D~LVVgV~e~~~~~~~~s~~~~~~~~~ld~~l~g~Ls~~~~~~~f~Gk~Ge~~~l~~~~~~~~rv 158 (583)
+.+.....|..++++|++|=++.+..... ......+-+..+..|.+..+... .-+.|+..+......+.++|
T Consensus 33 ~~i~i~~GDIt~~~vDaIVNaaN~~l~~g-------gGV~~AI~~aaG~~l~~ec~~~~-~~~~G~a~iT~g~~L~~k~V 104 (199)
T 3kh6_A 33 ITFQVATGDIATEQVDVIVNSTARTFNRK-------SGVSRAILEGAGQAVESECAVLA-AQPHRDFIITPGGCLKCKII 104 (199)
T ss_dssp EEEEEEESCGGGCCSSEEEEEECTTSCCC-------STHHHHHHHHHCHHHHHHHHHHH-TSCCCSSEEEECTTSSSSEE
T ss_pred EEEEEEecccccCcCCEEEECCCCCCCCC-------chHHHHHHHHhhHHHHHHHHHhC-CCCCCeEEEecCCCCCCCEE
Confidence 35666788888999999999887764321 22344455555555554443210 12567765554434566776
Q ss_pred EEEecCCCCCChHHHHHHHHHHHHHHHHcccCcEEEEe
Q 007947 159 GLIGLGQSASRAGDFRSLGESVAAAAKAAQASNVAVVL 196 (583)
Q Consensus 159 llVGLGk~~~~~~~~r~~~~a~a~~~k~~~~~~v~i~l 196 (583)
+=+ .|+. .+++.-....+.+.+.+.+++++-.
T Consensus 105 IH~-vgp~-----~L~~~y~~~L~~a~~~~i~SIAfP~ 136 (199)
T 3kh6_A 105 IHV-PGGK-----DVRKTVTSVLEECEQRKYTSVSLPA 136 (199)
T ss_dssp EEE-ETTS-----CHHHHHHHHHHHHHHTTCCEEEECC
T ss_pred EEe-CCCH-----HHHHHHHHHHHHHHHcCCCEEeecc
Confidence 544 3543 2555555566777788888887643
No 185
>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1
Probab=26.87 E-value=12 Score=31.75 Aligned_cols=31 Identities=29% Similarity=0.401 Sum_probs=21.1
Q ss_pred eEEEEEEeecccCCCCC-CC-CCCcEEEccCCcEEE
Q 007947 399 VEVHFIVAACENMISGT-GM-RPGDIITAANGKTIE 432 (583)
Q Consensus 399 vnV~~ii~~~ENm~sg~-A~-rPGDVvts~~GkTVE 432 (583)
+-|..+. +|.|... .. +|||+|.+-||+.|+
T Consensus 50 v~V~~V~---~~spA~~aGll~~GD~I~~vng~~v~ 82 (113)
T 1va8_A 50 VIISRIV---KGGAAEKSGLLHEGDEVLEINGIEIR 82 (113)
T ss_dssp EEEEEEC---TTSHHHHHTCCCTTCEEEEETTEECT
T ss_pred EEEEEeC---CCCHHHHcCCCCCCCEEEEECCEECC
Confidence 5555543 4444333 36 999999999998874
No 186
>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.79 E-value=18 Score=30.06 Aligned_cols=16 Identities=25% Similarity=0.488 Sum_probs=14.9
Q ss_pred CCCCcEEEccCCcEEE
Q 007947 417 MRPGDIITAANGKTIE 432 (583)
Q Consensus 417 ~rPGDVvts~~GkTVE 432 (583)
++|||+|.+.||+.|+
T Consensus 50 l~~GD~I~~vng~~v~ 65 (106)
T 2eei_A 50 VLADDHLIEVNGENVE 65 (106)
T ss_dssp CCSSEEEEEETTEECT
T ss_pred CCCCCEEEEECCEECC
Confidence 8999999999999885
No 187
>4amh_A Disks large homolog 1; permutation, protein folding, structural protein; 2.30A {Homo sapiens}
Probab=26.76 E-value=13 Score=31.26 Aligned_cols=25 Identities=20% Similarity=0.248 Sum_probs=18.2
Q ss_pred ecccCCCCCC--CCCCcEEEccCCcEE
Q 007947 407 ACENMISGTG--MRPGDIITAANGKTI 431 (583)
Q Consensus 407 ~~ENm~sg~A--~rPGDVvts~~GkTV 431 (583)
..+|.|...+ .+|||+|.+-||+.|
T Consensus 39 V~~gspA~~aG~L~~GD~Il~Vng~~v 65 (106)
T 4amh_A 39 IIEGGAAHKDGKLQIGDKLLAVNNVAL 65 (106)
T ss_dssp ECTTSHHHHHCCCCTTCEEEEETTEEC
T ss_pred ECCCCHHHHCCCCCCCCEEEEECCEEC
Confidence 3455554332 899999999999876
No 188
>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1
Probab=26.60 E-value=20 Score=30.67 Aligned_cols=16 Identities=25% Similarity=0.461 Sum_probs=14.8
Q ss_pred CCCCcEEEccCCcEEE
Q 007947 417 MRPGDIITAANGKTIE 432 (583)
Q Consensus 417 ~rPGDVvts~~GkTVE 432 (583)
+++||+|.+.||+.|+
T Consensus 54 L~~GD~Il~InG~~v~ 69 (111)
T 1vae_A 54 AKEGDYIVSIQGVDCK 69 (111)
T ss_dssp CCTTCEEEEETTEECS
T ss_pred CCCCCEEEEECCEECC
Confidence 8999999999998876
No 189
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A
Probab=26.14 E-value=11 Score=31.80 Aligned_cols=45 Identities=22% Similarity=0.348 Sum_probs=28.6
Q ss_pred eEEEEEEeecccCCCCC-C-CCCCcEEEccCCcEEEeecCCccCceehhhhhhHHHhc
Q 007947 399 VEVHFIVAACENMISGT-G-MRPGDIITAANGKTIEVNNTDAEGRLTLADALIYACNQ 454 (583)
Q Consensus 399 vnV~~ii~~~ENm~sg~-A-~rPGDVvts~~GkTVEV~NTDAEGRLvLADaL~Ya~~~ 454 (583)
+-|..+ .+|.|... . ++|||+|.+-||+.|+ | +-..|+..+.++.
T Consensus 35 v~V~~V---~~~spA~~aG~L~~GD~Il~Vng~~v~--~------~~~~~~~~~l~~~ 81 (108)
T 3cbz_A 35 IYIGSI---MKGGAVAADGRIEPGDMLLQVNDMNFE--N------MSNDDAVRVLRDI 81 (108)
T ss_dssp EEEEEE---CTTSHHHHHCCCCTTCEEEEETTEETT--S------CCHHHHHHHHHHH
T ss_pred EEEEEE---CCCChHHhcCCCCCCCEEEEECCEECC--C------CCHHHHHHHHHhc
Confidence 444444 45555443 2 8999999999998874 2 2355666665554
No 190
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens}
Probab=25.80 E-value=13 Score=32.23 Aligned_cols=16 Identities=25% Similarity=0.430 Sum_probs=14.4
Q ss_pred CCCCcEEEccCCcEEE
Q 007947 417 MRPGDIITAANGKTIE 432 (583)
Q Consensus 417 ~rPGDVvts~~GkTVE 432 (583)
++|||+|.+.||+.|+
T Consensus 73 L~~GD~Il~ing~~v~ 88 (128)
T 2db5_A 73 LKENDQILAINHTPLD 88 (128)
T ss_dssp CCSSCBEEEESSCBCS
T ss_pred CCCCCEEEEECCEECC
Confidence 8999999999998773
No 191
>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=25.20 E-value=22 Score=30.00 Aligned_cols=24 Identities=29% Similarity=0.471 Sum_probs=17.7
Q ss_pred ccCCCCC-C-CCCCcEEEccCCcEEE
Q 007947 409 ENMISGT-G-MRPGDIITAANGKTIE 432 (583)
Q Consensus 409 ENm~sg~-A-~rPGDVvts~~GkTVE 432 (583)
+|.|... . +++||+|.+.||+.|+
T Consensus 52 ~~spA~~aG~L~~GD~I~~vng~~v~ 77 (116)
T 2dm8_A 52 EEGAAARDGRLWAGDQILEVNGVDLR 77 (116)
T ss_dssp SSSHHHHHTCCCTTCEEEEETTEECS
T ss_pred CCChHHhCCCCCCCCEEEEECCEECC
Confidence 4444433 3 8999999999998764
No 192
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=24.88 E-value=73 Score=31.75 Aligned_cols=106 Identities=18% Similarity=0.234 Sum_probs=69.3
Q ss_pred EEEEEEeecccCCCCCCCCCCcEEEccCCcEEEeecCCccCceehh----hhhhHHHh-c------CCCeEEEecchhHH
Q 007947 400 EVHFIVAACENMISGTGMRPGDIITAANGKTIEVNNTDAEGRLTLA----DALIYACN-Q------GVDKVIDLATLTGA 468 (583)
Q Consensus 400 nV~~ii~~~ENm~sg~A~rPGDVvts~~GkTVEV~NTDAEGRLvLA----DaL~Ya~~-~------~p~~iIDiATLTGA 468 (583)
++-|+||.-|-+| +..|||||-|+.| =++|.+++-.++++|. +.|..-=+ . +-=.|.-+|=--
T Consensus 37 k~EgiLP~~Eqip-~E~~~~GDrIkay---V~~V~~~~~gpqIiLSRt~p~lvk~Lfe~EVPEI~dG~veI~~iaRe~-- 110 (251)
T 2asb_A 37 ASEGVIPAAEQVP-GESYEHGNRLRCY---VVGVTRGAREPLITLSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREA-- 110 (251)
T ss_dssp CEEEEECGGGSCT-TCCCCTTCEEEEE---EEEEECCSSSCEEEEESSCHHHHHHHHHHHCHHHHTTSEEEEEEEEET--
T ss_pred ceEEEEcHHHcCC-CccCCCCCEEEEE---EEEEEcCCCCCEEEEEeccHHHHHHHHHhcchHhhcCeEEEEEEecCC--
Confidence 3679999999877 6899999999987 4778888777888873 44443222 1 233455555444
Q ss_pred HHHhhCCC-eEEEeeCCHHH----------HHHHHHH-HHHhCCceeeCCCChhHHhhcc
Q 007947 469 CVVALGPS-VAGAFTPSDDL----------ANEVMAA-SQVSGEKIWRMPLEESYWEMMK 516 (583)
Q Consensus 469 ~~vALG~~-~agvfsn~~~l----------~~~l~~a-g~~~gE~~WrlPl~~~y~~~lk 516 (583)
|.+ --+|+|||+.+ -.+++.. .+..||++==.+..++-.+.++
T Consensus 111 -----G~R~KiAV~s~d~~iDpvGacIG~~G~rI~~i~~eL~gekIDIi~~s~dp~~fi~ 165 (251)
T 2asb_A 111 -----GHRSKIAVRSNVAGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYDDDPARFVA 165 (251)
T ss_dssp -----TTEEEEEEEESSTTCCHHHHHHCGGGHHHHHHHHHTTTCEEEEEECCSSHHHHHH
T ss_pred -----CceeEEEEEcCCCCCCHHHHHhCCCchHHHHHHHHhCCCeEEEEEecCCHHHHHH
Confidence 332 34678877531 2455655 6778888877776665555553
No 193
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1
Probab=24.68 E-value=16 Score=37.12 Aligned_cols=25 Identities=24% Similarity=0.423 Sum_probs=19.8
Q ss_pred cccCCCCCC-CCCCcEEEccCCcEEE
Q 007947 408 CENMISGTG-MRPGDIITAANGKTIE 432 (583)
Q Consensus 408 ~ENm~sg~A-~rPGDVvts~~GkTVE 432 (583)
.+|.|...| +||||||++.||+.|+
T Consensus 264 ~~~spA~~aGl~~GDvI~~ing~~v~ 289 (325)
T 1lcy_A 264 ILGSPAHRAGLRPGDVILAIGEQMVQ 289 (325)
T ss_dssp CTTSHHHHHTCCTTCEEEEETTEECC
T ss_pred CcCChHHHCCCCCCCEEEEECCEEcC
Confidence 456665555 9999999999998874
No 194
>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens}
Probab=24.03 E-value=16 Score=30.46 Aligned_cols=39 Identities=23% Similarity=0.334 Sum_probs=25.7
Q ss_pred cccCCCCC--CCCCCcEEEccCCcEEEeecCCccCceehhhhhhHHHhc
Q 007947 408 CENMISGT--GMRPGDIITAANGKTIEVNNTDAEGRLTLADALIYACNQ 454 (583)
Q Consensus 408 ~ENm~sg~--A~rPGDVvts~~GkTVEV~NTDAEGRLvLADaL~Ya~~~ 454 (583)
.+|.|... .+++||+|.+-||+.|+ + +...|+..+.++.
T Consensus 43 ~~~s~A~~a~gL~~GD~Il~Ing~~v~--~------~~~~~~~~~l~~~ 83 (103)
T 2dc2_A 43 HPGQPADRCGGLHVGDAILAVNGVNLR--D------TKHKEAVTILSQQ 83 (103)
T ss_dssp CTTSHHHHHTCCCSSEEEEEETTEEST--T------SCHHHHHHHHHHC
T ss_pred CCCCHHHHhCCCCCCCEEEEECCEECC--C------CCHHHHHHHHHhC
Confidence 44555443 68999999999998775 1 2355565555443
No 195
>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A
Probab=23.90 E-value=15 Score=32.01 Aligned_cols=31 Identities=19% Similarity=0.384 Sum_probs=20.8
Q ss_pred eEEEEEEeecccCCCCC-C-CCCCcEEEccCCcEEE
Q 007947 399 VEVHFIVAACENMISGT-G-MRPGDIITAANGKTIE 432 (583)
Q Consensus 399 vnV~~ii~~~ENm~sg~-A-~rPGDVvts~~GkTVE 432 (583)
+-|..+ .+|.|... . +++||+|.+-||+.|+
T Consensus 45 v~V~~V---~~~spA~~aG~L~~GD~Il~vng~~v~ 77 (129)
T 2kpk_A 45 LQIKSL---VLDGPAALDGKMETGDVIVSVNDTCVL 77 (129)
T ss_dssp EEEEEE---CTTSHHHHHSSCCTTCEEEEETTEECT
T ss_pred EEEEEE---CCCChHHHcCCCCCCCEEEEECCEECC
Confidence 444444 34444332 2 8999999999998764
No 196
>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=23.89 E-value=15 Score=31.74 Aligned_cols=31 Identities=26% Similarity=0.230 Sum_probs=21.8
Q ss_pred eEEEEEEeecccCCCCC-C-CCCCcEEEccCCcEEE
Q 007947 399 VEVHFIVAACENMISGT-G-MRPGDIITAANGKTIE 432 (583)
Q Consensus 399 vnV~~ii~~~ENm~sg~-A-~rPGDVvts~~GkTVE 432 (583)
+-|..+. +|.|... . ++|||+|.+-||+.|+
T Consensus 53 v~V~~V~---~~spA~~aG~L~~GD~Il~Ing~~v~ 85 (124)
T 2daz_A 53 IFVVGIN---PEGPAAADGRMRIGDELLEINNQILY 85 (124)
T ss_dssp EEEEEEC---TTSHHHHHTCCCTTCEECEESSCBCT
T ss_pred EEEEEEC---CCCHHHHcCCCCCCCEEEEECCEECC
Confidence 5555553 4544433 3 8999999999998774
No 197
>1vho_A Endoglucanase; structural genomics, unknown function; HET: MSE; 1.86A {Thermotoga maritima} SCOP: b.49.3.1 c.56.5.4
Probab=23.67 E-value=5.4e+02 Score=25.40 Aligned_cols=60 Identities=13% Similarity=0.067 Sum_probs=41.6
Q ss_pred HHHHHHhhcCCCCCCChHHHHHHHHHHhhhcCCceEEEEeCHHHHHHcCCCchhhhcccCCCCCeEEEEEE
Q 007947 266 VIFGRELVNSPANVLTPAVLAEEASKVASMYSDVLSATILDIEKCKELKMGSYLGVAAASANLPHFIHLCY 336 (583)
Q Consensus 266 ~~~aRdL~n~P~N~ltP~~~A~~a~~~~~~~~~~~~v~V~d~~~l~~~gmg~llaV~~GS~~pPrli~l~Y 336 (583)
+.+.++|++.|+---.-..+++..++..++++ +++++ | .+|.+++.-.|. .+|+++...+
T Consensus 8 ~~~l~~Lv~~~s~sg~e~~~~~~l~~~l~~~g--~~~~~-d-------~~gnlia~~~g~-~~~~i~l~aH 67 (346)
T 1vho_A 8 GKLLMELSNLDGPSGYETNVVSYIKSVIEPFV--DEAKT-T-------RHGSLIGYKKGK-GIGKLAFFAH 67 (346)
T ss_dssp HHHHHHHHHSCCBTTCCHHHHHHHHHHHGGGC--SEEEE-C-------TTSCEEEEECCS-SSCEEEEEEE
T ss_pred HHHHHHHHcCCCCCcchHHHHHHHHHHHHhhC--CEEEE-e-------cCCcEEEEEcCC-CCceEEEEec
Confidence 46889999999855555678888888888885 77776 3 356777765564 3455554433
No 198
>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=22.92 E-value=13 Score=32.15 Aligned_cols=31 Identities=23% Similarity=0.321 Sum_probs=20.7
Q ss_pred eEEEEEEeecccCCCCC-C-CCCCcEEEccCCcEEE
Q 007947 399 VEVHFIVAACENMISGT-G-MRPGDIITAANGKTIE 432 (583)
Q Consensus 399 vnV~~ii~~~ENm~sg~-A-~rPGDVvts~~GkTVE 432 (583)
+-|..+ .+|.|... . ++|||+|.+.||+.|+
T Consensus 48 v~V~~V---~~~spA~~aG~L~~GD~I~~vng~~v~ 80 (129)
T 2dmz_A 48 IYVKSV---IPGSAAYHNGHIQVNDKIVAVDGVNIQ 80 (129)
T ss_dssp EEEEEE---CTTSHHHHHTCCCSSCBEEEETTBCCT
T ss_pred EEEEEe---CCCCHHHHcCCCCCCCEEEEECCEECC
Confidence 555544 34444322 2 8999999999998763
No 199
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=22.92 E-value=16 Score=31.21 Aligned_cols=31 Identities=16% Similarity=0.166 Sum_probs=21.1
Q ss_pred eEEEEEEeecccCCCCC-C-CCCCcEEEccCCcEEE
Q 007947 399 VEVHFIVAACENMISGT-G-MRPGDIITAANGKTIE 432 (583)
Q Consensus 399 vnV~~ii~~~ENm~sg~-A-~rPGDVvts~~GkTVE 432 (583)
+-|..+. +|.|... . ++|||+|.+-||+.|+
T Consensus 51 ~~V~~v~---~~s~A~~aG~L~~GD~Il~vng~~v~ 83 (117)
T 1ujd_A 51 AYIAKIL---PGGSAEQTGKLMEGMQVLEWNGIPLT 83 (117)
T ss_dssp EEEEEEC---TTCHHHHHSSCCTTCEEEEETTEECT
T ss_pred EEEEEEC---CCCHHHHcCCCCCCCEEEEECCEEcC
Confidence 4444443 4544433 3 8999999999998875
No 200
>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=22.67 E-value=9 Score=32.34 Aligned_cols=31 Identities=13% Similarity=0.190 Sum_probs=21.1
Q ss_pred eEEEEEEeecccCCCCCC--CCCCcEEEccCCcEEE
Q 007947 399 VEVHFIVAACENMISGTG--MRPGDIITAANGKTIE 432 (583)
Q Consensus 399 vnV~~ii~~~ENm~sg~A--~rPGDVvts~~GkTVE 432 (583)
+-|..+. +|.|...+ ++|||+|.+-||+.|+
T Consensus 46 v~V~~V~---~~spA~~aG~L~~GD~Il~vng~~v~ 78 (111)
T 1uju_A 46 IFISKVS---PTGAAGRDGRLRVGLRLLEVNQQSLL 78 (111)
T ss_dssp CEEEEEC---TTSHHHHHSSCCTTCBCCBBSSCBCT
T ss_pred EEEEEEC---CCCHHHHcCCCCCCCEEEEECCEECC
Confidence 5555543 44443322 8999999999998764
No 201
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=22.55 E-value=16 Score=30.75 Aligned_cols=39 Identities=23% Similarity=0.377 Sum_probs=25.0
Q ss_pred ecccCCCCC-C-CCCCcEEEccCCcEEEeecCCccCceehhhhhhHHHh
Q 007947 407 ACENMISGT-G-MRPGDIITAANGKTIEVNNTDAEGRLTLADALIYACN 453 (583)
Q Consensus 407 ~~ENm~sg~-A-~rPGDVvts~~GkTVEV~NTDAEGRLvLADaL~Ya~~ 453 (583)
..+|.|... . ++|||+|.+-||+.|+ + +...|++.+-+.
T Consensus 51 v~~~spA~~aG~L~~GD~Il~Vng~~v~--~------~~~~~~~~~l~~ 91 (108)
T 2d92_A 51 LVADGVAERSGGLLPGDRLVSVNEYCLD--N------TSLAEAVEILKA 91 (108)
T ss_dssp ECTTCHHHHHTCCCTTCEEEEESSCBCT--T------CCHHHHHHHHHH
T ss_pred ECCCCHHHHCCCCCCCCEEEEECCEECC--C------CCHHHHHHHHHh
Confidence 345555443 3 8999999999998764 1 234556555544
No 202
>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A
Probab=22.48 E-value=21 Score=31.09 Aligned_cols=27 Identities=22% Similarity=0.235 Sum_probs=18.9
Q ss_pred eecccCCCCCC--CCCCcEEEccCCcEEE
Q 007947 406 AACENMISGTG--MRPGDIITAANGKTIE 432 (583)
Q Consensus 406 ~~~ENm~sg~A--~rPGDVvts~~GkTVE 432 (583)
-..+|.|...+ +++||+|.+-||+.|+
T Consensus 61 ~V~~gspA~~aG~L~~GD~Il~Vng~~v~ 89 (127)
T 1wg6_A 61 SIIHGGAAFKDGRLRMNDQLIAVNGETLL 89 (127)
T ss_dssp ECCSSSSTHHHHTSCSCCBEEEETTEEST
T ss_pred EECCCCHHHHCCCCCCCCEEEEECCEECC
Confidence 33455544332 9999999999997654
No 203
>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=22.42 E-value=13 Score=31.24 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=17.7
Q ss_pred ccCCCCCC--CCCCcEEEccCCcEE
Q 007947 409 ENMISGTG--MRPGDIITAANGKTI 431 (583)
Q Consensus 409 ENm~sg~A--~rPGDVvts~~GkTV 431 (583)
+|.|.-.+ ++|||+|.+.||+.|
T Consensus 48 ~~s~A~~aG~L~~GD~Il~Vng~~v 72 (113)
T 1um7_A 48 AGGPADLSGELRRGDRILSVNGVNL 72 (113)
T ss_dssp SSSHHHHTTCCCTTCEEEEESSCBC
T ss_pred CCCHHHHcCCCCCCCEEEEECCEEC
Confidence 44444444 899999999999877
No 204
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A
Probab=21.49 E-value=20 Score=36.42 Aligned_cols=27 Identities=19% Similarity=0.452 Sum_probs=0.0
Q ss_pred eecccCCCCCC-CCCCcEEEccCCcEEE
Q 007947 406 AACENMISGTG-MRPGDIITAANGKTIE 432 (583)
Q Consensus 406 ~~~ENm~sg~A-~rPGDVvts~~GkTVE 432 (583)
-..+|.|...| .+|||+|++.||+.|.
T Consensus 260 ~v~~~spA~~aGl~~GD~I~~ing~~v~ 287 (332)
T 3num_A 260 EVIPDTPAEAGGLKENDVIISINGQSVV 287 (332)
T ss_dssp ----------------------------
T ss_pred EeccCCChHHcCCCCCCEEEEECCEECC
Confidence 34567776655 9999999999999883
No 205
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens}
Probab=21.43 E-value=16 Score=31.56 Aligned_cols=31 Identities=16% Similarity=0.308 Sum_probs=21.5
Q ss_pred eEEEEEEeecccCCCCC--CCCCCcEEEccCCcEEE
Q 007947 399 VEVHFIVAACENMISGT--GMRPGDIITAANGKTIE 432 (583)
Q Consensus 399 vnV~~ii~~~ENm~sg~--A~rPGDVvts~~GkTVE 432 (583)
+-|..+. +|.|... ..+|||+|.+-||+.|+
T Consensus 55 v~V~~V~---~gspA~~aG~L~~GD~Il~VNg~~v~ 87 (118)
T 3b76_A 55 IYVISVE---PGGVISRDGRIKTGDILLNVDGVELT 87 (118)
T ss_dssp EEEEEEC---TTSHHHHHCSSCTTCEEEEETTEEGG
T ss_pred EEEEEEC---CCCHHHHCCCCCCCCEEEEECCEECC
Confidence 5555543 4444333 28999999999998775
No 206
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A
Probab=21.12 E-value=24 Score=33.39 Aligned_cols=27 Identities=26% Similarity=0.364 Sum_probs=21.5
Q ss_pred eecccCCCCCC-CCCC-cEEEccCCcEEE
Q 007947 406 AACENMISGTG-MRPG-DIITAANGKTIE 432 (583)
Q Consensus 406 ~~~ENm~sg~A-~rPG-DVvts~~GkTVE 432 (583)
-..+|.|...| ++|| |+|++.||+.|+
T Consensus 22 ~V~~~SpA~~AGL~~G~D~I~~ing~~v~ 50 (209)
T 3rle_A 22 RVQENSPGHRAGLEPFFDFIVSINGSRLN 50 (209)
T ss_dssp EECTTSHHHHTTCCTTTEEEEEETTEECC
T ss_pred EECCCCHHHHCCCCcCCeEEEEECCEECc
Confidence 45677776544 9999 999999999875
No 207
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}
Probab=21.05 E-value=21 Score=33.12 Aligned_cols=26 Identities=23% Similarity=0.203 Sum_probs=19.8
Q ss_pred cccCCCCCC--CCCCcEEEccCCcEEEe
Q 007947 408 CENMISGTG--MRPGDIITAANGKTIEV 433 (583)
Q Consensus 408 ~ENm~sg~A--~rPGDVvts~~GkTVEV 433 (583)
.+|.|...+ +|+||+|.+.||+.|+=
T Consensus 53 ~~~spA~~aG~L~~GD~Il~vng~~v~~ 80 (206)
T 3r0h_A 53 YPEGQVAADKRLKIFDHICDINGTPIHV 80 (206)
T ss_dssp CTTSHHHHHCCCCTTCEEEEETTEECCG
T ss_pred CCCChHHhcCCCCCCCEEEEECCEEcCC
Confidence 356555443 99999999999998753
No 208
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A
Probab=21.03 E-value=22 Score=30.56 Aligned_cols=31 Identities=26% Similarity=0.432 Sum_probs=20.9
Q ss_pred eEEEEEEeecccCCCCC--CCCCCcEEEccCCcEEE
Q 007947 399 VEVHFIVAACENMISGT--GMRPGDIITAANGKTIE 432 (583)
Q Consensus 399 vnV~~ii~~~ENm~sg~--A~rPGDVvts~~GkTVE 432 (583)
+-|..+. +|.|... ..+|||+|.+-||+.|+
T Consensus 47 ~~V~~v~---~gspA~~aG~L~~GD~Il~ing~~v~ 79 (125)
T 3hpk_A 47 LYIVQVF---DNTPAALDGTVAAGDEITGVNGRSIK 79 (125)
T ss_dssp EEEEEEC---TTSHHHHHCCCCTTCEEEEETTEECT
T ss_pred EEEEEeC---CCCHHHHCCCCCCCCEEEEECCEECC
Confidence 5554443 4444322 29999999999998764
No 209
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}
Probab=20.61 E-value=25 Score=32.58 Aligned_cols=31 Identities=26% Similarity=0.424 Sum_probs=21.7
Q ss_pred eEEEEEEeecccCCCCCC--CCCCcEEEccCCcEEE
Q 007947 399 VEVHFIVAACENMISGTG--MRPGDIITAANGKTIE 432 (583)
Q Consensus 399 vnV~~ii~~~ENm~sg~A--~rPGDVvts~~GkTVE 432 (583)
+-|..+ .++.|...+ .||||+|.+-||+.|+
T Consensus 138 v~V~~V---~~gs~A~~aG~L~~GD~Il~VNg~~v~ 170 (206)
T 3r0h_A 138 CTIADL---IQGQYPEIDSKLQRGDIITKFNGDALE 170 (206)
T ss_dssp EEEEEE---CTTSCHHHHHHCCTTCEEEEETTEECT
T ss_pred EEEEEE---CCCChHHHcCCCCCCCEEEEECCEECC
Confidence 444444 345554443 8999999999998874
No 210
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}
Probab=20.30 E-value=21 Score=33.15 Aligned_cols=25 Identities=28% Similarity=0.405 Sum_probs=19.6
Q ss_pred cccCCCCC--CCCCCcEEEccCCcEEE
Q 007947 408 CENMISGT--GMRPGDIITAANGKTIE 432 (583)
Q Consensus 408 ~ENm~sg~--A~rPGDVvts~~GkTVE 432 (583)
.+|.|... .+++||+|.+.||+.|+
T Consensus 41 ~~~spA~~aggl~~GD~I~~vng~~v~ 67 (200)
T 2qt5_A 41 RQGGIAARSDQLDVGDYIKAVNGINLA 67 (200)
T ss_dssp CTTSHHHHTTSCCTTCEEEEETTEECT
T ss_pred CCCChHHhcCCCCCCCEEEEECCEECC
Confidence 45655554 49999999999999874
No 211
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} SCOP: b.36.1.0
Probab=20.02 E-value=22 Score=28.76 Aligned_cols=30 Identities=20% Similarity=0.225 Sum_probs=20.1
Q ss_pred eEEEEEEeecccCCCCC--CCCCCcEEEccCCcEE
Q 007947 399 VEVHFIVAACENMISGT--GMRPGDIITAANGKTI 431 (583)
Q Consensus 399 vnV~~ii~~~ENm~sg~--A~rPGDVvts~~GkTV 431 (583)
+-|..+ .+|.|... ..++||+|.+-||+.|
T Consensus 30 ~~V~~v---~~gspA~~aG~L~~GD~I~~ing~~v 61 (93)
T 3o46_A 30 IIVARI---MRGGAADRSGLIHVGDELREVNGIPV 61 (93)
T ss_dssp EEEEEE---CTTSHHHHHTCCCTTCEEEEETTEES
T ss_pred EEEEEE---CCCCHHHHcCCCCCCCEEEEECCEEC
Confidence 444444 34444332 2899999999999876
Done!