BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007949
(583 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HQI|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HQI|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
Length = 312
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/219 (23%), Positives = 107/219 (48%), Gaps = 25/219 (11%)
Query: 272 YKALRDVDNSQKRFILQGSALPEEDRLPA--ALSRILQISLARSNMDHNIDNGI------ 323
Y+ ++ D K+FI +G L E + L L+ ++S+ + +++ + N +
Sbjct: 98 YRFVQGKDWGFKKFIRRGFLLDEANGLLPDDKLTLFCEVSVVQDSVNISGQNTMNMVKVP 157
Query: 324 -CKLSSSVEAMHISDHVDDLADVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGK 382
C+L+ + + + D C+ V + F+ H+ +LA+RS F A + E K
Sbjct: 158 ECRLADELGGLWENSR---FTDCCLCVAGQEFQAHKAILAARSPVFSAMFEH--EMEESK 212
Query: 383 EGLPGDILPCIEEHDLSKETFEKMIEYMYTDGLKDIDPDQAEEMFDAASRYLLFPLKRAV 442
+ +E +D+ E F++M+ ++YT ++D A+++ AA +Y L LK
Sbjct: 213 KNR-------VEINDVEPEVFKEMMCFIYTGKAPNLDK-MADDLLAAADKYALERLKVMC 264
Query: 443 ADVLLLHLEMVSPAELCHWLILSDMYGVFKVREYCLEVI 481
D L +L + + AE+ LIL+D++ +++ ++ I
Sbjct: 265 EDALCSNLSVENAAEI---LILADLHSADQLKTQAVDFI 300
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Query: 172 DVVFYVQGRPIEAHRVILSARSVFFRRKFETDWRYRNEIRFSREKLSYPALYGLIHFFYS 231
D V G+ +AH+ IL+ARS F FE + + R + ++ F Y+
Sbjct: 176 DCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYT 235
Query: 232 DR---LEIAVDDM 241
+ L+ DD+
Sbjct: 236 GKAPNLDKMADDL 248
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 35/102 (34%), Positives = 56/102 (54%), Gaps = 11/102 (10%)
Query: 17 DLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLA 76
D++A D + PL A+R G ++ ++ +LE+G +VNA+D+ L+ A
Sbjct: 27 DVNAKDKNGRTPLHL--------AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN 78
Query: 77 GHLDAARMLLESGAICSEHTFDGDR-CHYAALN--LKVRKLL 115
GHL+ ++LLE+GA + +G H AA N L+V KLL
Sbjct: 79 GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 120
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Query: 40 ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99
A+R G ++ ++ +LE+G +VNA+D+ L+ A GHL+ ++LLE+GA + +G
Sbjct: 9 AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG 68
Query: 100 DR-CHYAALN--LKVRKLL 115
H AA N L+V KLL
Sbjct: 69 RTPLHLAARNGHLEVVKLL 87
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 8/74 (10%)
Query: 17 DLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLA 76
D++A D + PL A+R G ++ ++ +LE+G +VNA+D+ L+ A
Sbjct: 60 DVNAKDKNGRTPLHL--------AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN 111
Query: 77 GHLDAARMLLESGA 90
GHL+ ++LLE+GA
Sbjct: 112 GHLEVVKLLLEAGA 125
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An
Anti-Ige Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An
Anti-Ige Inhibitor
Length = 135
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 34/54 (62%)
Query: 37 VFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGA 90
+ EA+RAG D +R + +G +VNA D W L+ A + GHL+ +LL++GA
Sbjct: 18 LLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGA 71
Score = 33.5 bits (75), Expect = 0.29, Method: Composition-based stats.
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 8/74 (10%)
Query: 17 DLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLA 76
D++A+D+ PL A+ G ++ + +L++G +VNA L+ A A
Sbjct: 39 DVNANDYWGHTPLHL--------AAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWA 90
Query: 77 GHLDAARMLLESGA 90
HL+ +LL+ GA
Sbjct: 91 DHLEIVEVLLKHGA 104
>pdb|4EOZ|A Chain A, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
pdb|4EOZ|C Chain C, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
Length = 145
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 69/133 (51%), Gaps = 13/133 (9%)
Query: 342 LADVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKE 401
D C+ V + F+ H+ +LA+RS F A + E K+ +E +D+ E
Sbjct: 25 FTDCCLCVAGQEFQAHKAILAARSPVFSAMFEH--EMEESKKNR-------VEINDVEPE 75
Query: 402 TFEKMIEYMYTDGLKDIDPDQAEEMFDAASRYLLFPLKRAVADVLLLHLEMVSPAELCHW 461
F++M+ ++YT ++D A+++ AA +Y L LK D L +L + + AE+
Sbjct: 76 VFKEMMCFIYTGKAPNLDK-MADDLLAAADKYALERLKVMCEDALCSNLSVENAAEI--- 131
Query: 462 LILSDMYGVFKVR 474
LIL+D++ +++
Sbjct: 132 LILADLHSADQLK 144
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 27/62 (43%)
Query: 172 DVVFYVQGRPIEAHRVILSARSVFFRRKFETDWRYRNEIRFSREKLSYPALYGLIHFFYS 231
D V G+ +AH+ IL+ARS F FE + + R + ++ F Y+
Sbjct: 27 DCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYT 86
Query: 232 DR 233
+
Sbjct: 87 GK 88
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 49.7 bits (117), Expect = 4e-06, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 36/54 (66%)
Query: 37 VFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGA 90
+ EA+RAG D +R ++ +G +VNA+D++ LY A GHL+ +LL++GA
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGA 71
Score = 36.2 bits (82), Expect = 0.048, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 17 DLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLA 76
D++A D PL + A+ G ++ + +L++G +VNA D L+ A
Sbjct: 39 DVNAKDEYGLTPL--------YLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFI 90
Query: 77 GHLDAARMLLESGA 90
GHL+ A +LL+ GA
Sbjct: 91 GHLEIAEVLLKHGA 104
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 49.3 bits (116), Expect = 6e-06, Method: Composition-based stats.
Identities = 42/120 (35%), Positives = 60/120 (50%), Gaps = 7/120 (5%)
Query: 37 VFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHT 96
+ EA+RAG D +R ++ +G +VNA D S L+ A GH + +LL+ GA +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARD 77
Query: 97 FDG-DRCHYAALN--LKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANRQFLEEAEVVL 153
DG H AA N L++ ++L Y A Q A T L A+R LE EV+L
Sbjct: 78 TDGWTPLHLAADNGHLEIVEVLLKYGADVNA----QDAYGLTPLHLAADRGHLEIVEVLL 133
Score = 33.9 bits (76), Expect = 0.23, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 8/74 (10%)
Query: 17 DLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLA 76
D++A D PL A+ G ++ + +L+ G +VNA+D + L+ A
Sbjct: 72 DVNARDTDGWTPLHL--------AADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADR 123
Query: 77 GHLDAARMLLESGA 90
GHL+ +LL+ GA
Sbjct: 124 GHLEIVEVLLKHGA 137
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
Query: 37 VFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHT 96
+ EA+RAG D +R ++ +G +VNA D + L+ A GHL+ +LL++GA +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALD 77
Query: 97 FDGDR-CHYAAL--NLKVRKLLKAYEA 120
F G H AA +L++ ++L Y A
Sbjct: 78 FSGSTPLHLAAKRGHLEIVEVLLKYGA 104
Score = 42.4 bits (98), Expect = 7e-04, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 8/74 (10%)
Query: 17 DLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLA 76
D++A DFS S PL A++ G ++ + +L+ G +VNA D S L+ A
Sbjct: 72 DVNALDFSGSTPLHL--------AAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADT 123
Query: 77 GHLDAARMLLESGA 90
GHL+ +LL+ GA
Sbjct: 124 GHLEIVEVLLKYGA 137
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Query: 40 ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99
A+R G ++ ++ +LE+G +VNA+D+ L+ A GHL+ ++LLE+GA + +G
Sbjct: 9 AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG 68
Query: 100 DR-CHYAALN--LKVRKLL 115
H AA N L+V KLL
Sbjct: 69 RTPLHLAARNGHLEVVKLL 87
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 8/74 (10%)
Query: 17 DLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLA 76
D++A D + PL A+R G ++ ++ +LE+G +VNA+D+ L+ A
Sbjct: 27 DVNAKDKNGRTPLHL--------AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN 78
Query: 77 GHLDAARMLLESGA 90
GHL+ ++LLE+GA
Sbjct: 79 GHLEVVKLLLEAGA 92
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 36/54 (66%)
Query: 37 VFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGA 90
+ EA+RAG D +R ++ +G +V A+D+ S L+ A GHL+ ++LLE+GA
Sbjct: 28 LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGA 81
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 8/69 (11%)
Query: 17 DLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLA 76
D+ A D + S PL A+R G ++ ++ +LE+G +V A+D++ A +
Sbjct: 49 DVAAKDKNGSTPLHL--------AARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDN 100
Query: 77 GHLDAARML 85
G+ D A +L
Sbjct: 101 GNEDLAEIL 109
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 36/54 (66%)
Query: 37 VFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGA 90
+ EA+RAG D +R ++ +G +V A+D+ S L+ A GHL+ ++LLE+GA
Sbjct: 10 LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGA 63
Score = 32.7 bits (73), Expect = 0.54, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 8/69 (11%)
Query: 17 DLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLA 76
D+ A D + S PL A+R G ++ ++ +LE+G +VNA+D++ A +
Sbjct: 31 DVAAKDKNGSTPLHL--------AARNGHLEVVKLLLEAGADVNAQDKFGKTAFDISIDN 82
Query: 77 GHLDAARML 85
G+ D A +L
Sbjct: 83 GNEDLAEIL 91
>pdb|4AP2|A Chain A, Crystal Structure Of The Human Klhl11-cul3 Complex At 2.8a
Resolution
pdb|4APF|A Chain A, Crystal Structure Of The Human Klhl11-cul3 Complex At 3.1a
Resolution
Length = 297
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 82/194 (42%), Gaps = 18/194 (9%)
Query: 354 FRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKETFEKMIEYMYTD 413
FR H+ VLA+ +EYF LS F E + G ++ E +T E +IEYMYT
Sbjct: 65 FRAHRSVLAAATEYFTPLLS--GQFSESRSGRV-EMRKWSSEPGPEPDTVEAVIEYMYTG 121
Query: 414 GLKDIDPDQAEEMFDAASRYLLFPLKRAVADVLLLHLEMVSPAELCHWLILSDMYGVFKV 473
++ + E+ + A R+LL LK + L L + + + L+ MY + ++
Sbjct: 122 RIR-VSTGSVHEVLELADRFLLIRLKEFCGEFLKKKLHLSNCVAIHS---LAHMYTLSQL 177
Query: 474 REYCLEVIACNFETFADSREFRAMLLTLPPPSGDSSFRTTVPSAPGAIINVDQGNLLDDL 533
++I NF EF TLP F I VD +L +
Sbjct: 178 ALKAADMIRRNFHKVIQDEEF----YTLP-------FHLIRDWLSDLEITVDSEEVLFET 226
Query: 534 REKWLEAEAAELDK 547
KW++ A E ++
Sbjct: 227 VLKWVQRNAEERER 240
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 4/77 (5%)
Query: 37 VFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHT 96
+ EA+RAG D +R ++ +G +VNA+D+ L+ A GHL+ +LL++GA +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 77
Query: 97 FDGDRCHYAALNLKVRK 113
DG Y L+L R+
Sbjct: 78 KDG----YTPLHLAARE 90
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 12/97 (12%)
Query: 17 DLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLA 76
D++A D PL A+R G ++ + +L++G +VNA+D+ L+ A
Sbjct: 39 DVNAKDKDGYTPLHL--------AAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAARE 90
Query: 77 GHLDAARMLLESGAICSEHTFDGDRCHYAALNLKVRK 113
GHL+ +LL++GA + DG Y L+L R+
Sbjct: 91 GHLEIVEVLLKAGADVNAKDKDG----YTPLHLAARE 123
Score = 38.5 bits (88), Expect = 0.011, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 8/74 (10%)
Query: 17 DLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLA 76
D++A D PL A+R G ++ + +L++G +VNA+D+ L+ A
Sbjct: 72 DVNAKDKDGYTPLHL--------AAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAARE 123
Query: 77 GHLDAARMLLESGA 90
GHL+ +LL++GA
Sbjct: 124 GHLEIVEVLLKAGA 137
Score = 28.9 bits (63), Expect = 9.1, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 8/69 (11%)
Query: 17 DLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLA 76
D++A D PL A+R G ++ + +L++G +VNA+D++ A +
Sbjct: 105 DVNAKDKDGYTPLHL--------AAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDN 156
Query: 77 GHLDAARML 85
G+ D A +L
Sbjct: 157 GNEDLAEIL 165
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 4/77 (5%)
Query: 37 VFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHT 96
+ EA+RAG D +R ++ +G +VNA+D+ L+ A GHL+ +LL++GA +
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 65
Query: 97 FDGDRCHYAALNLKVRK 113
DG Y L+L R+
Sbjct: 66 KDG----YTPLHLAARE 78
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 12/97 (12%)
Query: 17 DLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLA 76
D++A D PL A+R G ++ + +L++G +VNA+D+ L+ A
Sbjct: 27 DVNAKDKDGYTPLHL--------AAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAARE 78
Query: 77 GHLDAARMLLESGAICSEHTFDGDRCHYAALNLKVRK 113
GHL+ +LL++GA + DG Y L+L R+
Sbjct: 79 GHLEIVEVLLKAGADVNAKDKDG----YTPLHLAARE 111
Score = 38.1 bits (87), Expect = 0.013, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 8/74 (10%)
Query: 17 DLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLA 76
D++A D PL A+R G ++ + +L++G +VNA+D+ L+ A
Sbjct: 60 DVNAKDKDGYTPLHL--------AAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAARE 111
Query: 77 GHLDAARMLLESGA 90
GHL+ +LL++GA
Sbjct: 112 GHLEIVEVLLKAGA 125
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 4/77 (5%)
Query: 37 VFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHT 96
+ EA+RAG D +R ++ +G +VNA+D+ L+ A GHL+ +LL++GA +
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 65
Query: 97 FDGDRCHYAALNLKVRK 113
DG Y L+L R+
Sbjct: 66 KDG----YTPLHLAARE 78
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 12/97 (12%)
Query: 17 DLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLA 76
D++A D PL A+R G ++ + +L++G +VNA+D+ L+ A
Sbjct: 27 DVNAKDKDGYTPLHL--------AAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAARE 78
Query: 77 GHLDAARMLLESGAICSEHTFDGDRCHYAALNLKVRK 113
GHL+ +LL++GA + DG Y L+L R+
Sbjct: 79 GHLEIVEVLLKAGADVNAKDKDG----YTPLHLAARE 111
Score = 38.1 bits (87), Expect = 0.013, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 8/74 (10%)
Query: 17 DLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLA 76
D++A D PL A+R G ++ + +L++G +VNA+D+ L+ A
Sbjct: 60 DVNAKDKDGYTPLHL--------AAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAARE 111
Query: 77 GHLDAARMLLESGA 90
GHL+ +LL++GA
Sbjct: 112 GHLEIVEVLLKAGA 125
Score = 31.2 bits (69), Expect = 1.5, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 8/69 (11%)
Query: 17 DLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLA 76
D++A D PL A+R G ++ + +L++G +VNA+D++ A
Sbjct: 93 DVNAKDKDGYTPLHL--------AAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIRE 144
Query: 77 GHLDAARML 85
GH D A +L
Sbjct: 145 GHEDIAEVL 153
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 37 VFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHT 96
+ EA+RAG D +R ++ +G +VNA D L+ A + GHL+ +LL+ GA +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAAD 77
Query: 97 FDGDR-CHYAAL 107
GD H AAL
Sbjct: 78 KMGDTPLHLAAL 89
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 9/91 (9%)
Query: 17 DLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLA 76
D++A D S PL A+ G ++ + +L+ G +VNA D+ L+ A L
Sbjct: 39 DVNAEDDSGKTPLHL--------AAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAALY 90
Query: 77 GHLDAARMLLESGA-ICSEHTFDGDRCHYAA 106
GHL+ +LL++GA + + T+ H AA
Sbjct: 91 GHLEIVEVLLKNGADVNATDTYGFTPLHLAA 121
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 46.2 bits (108), Expect = 5e-05, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 37 VFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHT 96
+ EA+RAG D +R ++ +G +VNA D+ + L+ A HL+ +LL+ GA + H
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHD 77
Query: 97 FDGDR-CHYAAL 107
DG H AAL
Sbjct: 78 NDGSTPLHLAAL 89
Score = 37.4 bits (85), Expect = 0.023, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 8/74 (10%)
Query: 17 DLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLA 76
D++A+D + PL + D E + +L+ G +VNA D S L+ A L
Sbjct: 39 DVNANDRKGNTPLHLAADYDHLEI--------VEVLLKHGADVNAHDNDGSTPLHLAALF 90
Query: 77 GHLDAARMLLESGA 90
GHL+ +LL+ GA
Sbjct: 91 GHLEIVEVLLKHGA 104
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 46.2 bits (108), Expect = 6e-05, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 34/54 (62%)
Query: 37 VFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGA 90
+ EA+RAG D +R ++ +G +VNA D + L+ A +GHL+ +LL+ GA
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGA 71
Score = 37.4 bits (85), Expect = 0.021, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 8/83 (9%)
Query: 17 DLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLA 76
D++A+D + + PL A+ +G ++ + +L+ G +V+A D + L+ A
Sbjct: 39 DVNAADNTGTTPLHL--------AAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAAYW 90
Query: 77 GHLDAARMLLESGAICSEHTFDG 99
GHL+ +LL++GA + DG
Sbjct: 91 GHLEIVEVLLKNGADVNAMDSDG 113
Score = 33.5 bits (75), Expect = 0.32, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 8/74 (10%)
Query: 17 DLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLA 76
D+DASD PL A+ G ++ + +L++G +VNA D L+ A
Sbjct: 72 DVDASDVFGYTPLHL--------AAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKW 123
Query: 77 GHLDAARMLLESGA 90
G+L+ +LL+ GA
Sbjct: 124 GYLEIVEVLLKHGA 137
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 45.8 bits (107), Expect = 7e-05, Method: Composition-based stats.
Identities = 32/89 (35%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Query: 37 VFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHT 96
+ EA+ G+ DR++ +LE+G + NA D L+YA GH + ++LL GA +
Sbjct: 8 LIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKD 67
Query: 97 FDGDR-CHYAALN--LKVRKLLKAYEARP 122
DG HYAA N ++ KLL + A P
Sbjct: 68 SDGRTPLHYAAENGHKEIVKLLLSKGADP 96
Score = 38.9 bits (89), Expect = 0.007, Method: Composition-based stats.
Identities = 36/122 (29%), Positives = 54/122 (44%), Gaps = 11/122 (9%)
Query: 4 NRQSTIDAELDEIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARD 63
N+ D + D +ASD PL A+ G + ++ +L G + NA+D
Sbjct: 16 NKDRVKDLLENGADPNASDSDGRTPLHY--------AAENGHKEIVKLLLSKGADPNAKD 67
Query: 64 QWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDR-CHYAALN--LKVRKLLKAYEA 120
L+YA GH + ++LL GA + DG HYAA N ++ KLL + A
Sbjct: 68 SDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGA 127
Query: 121 RP 122
P
Sbjct: 128 DP 129
Score = 32.3 bits (72), Expect = 0.70, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 8/83 (9%)
Query: 17 DLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLA 76
D +A D PL A+ G + ++ +L G + NA+D L+YA
Sbjct: 62 DPNAKDSDGRTPLHY--------AAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAEN 113
Query: 77 GHLDAARMLLESGAICSEHTFDG 99
GH + ++LL GA + DG
Sbjct: 114 GHKEIVKLLLSKGADPNTSDSDG 136
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 45.4 bits (106), Expect = 8e-05, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 37 VFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHT 96
+ EA+ G+ DR++ ++E+G +VNA D L+YA GH + ++L+ GA +
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKD 67
Query: 97 FDGDR-CHYAA 106
DG HYAA
Sbjct: 68 SDGRTPLHYAA 78
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 9/104 (8%)
Query: 4 NRQSTIDAELDEIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARD 63
N+ D + D++ASD PL A++ G + ++ ++ G +VNA+D
Sbjct: 16 NKDRVKDLIENGADVNASDSDGRTPLHY--------AAKEGHKEIVKLLISKGADVNAKD 67
Query: 64 QWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDR-CHYAA 106
L+YA GH + ++L+ GA + DG HYAA
Sbjct: 68 SDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAA 111
Score = 37.0 bits (84), Expect = 0.030, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Query: 17 DLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLA 76
D++A D PL A++ G + ++ ++ G +VNA+D L+YA
Sbjct: 62 DVNAKDSDGRTPLHY--------AAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKE 113
Query: 77 GHLDAARMLLESGAICSEHTFDG 99
GH + ++L+ GA + DG
Sbjct: 114 GHKEIVKLLISKGADVNTSDSDG 136
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat
Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat
Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat
Protein
Length = 154
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 32/54 (59%)
Query: 37 VFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGA 90
+ EA+RAG D +R ++ +G + NA D + L+ A GHL+ +LL +GA
Sbjct: 6 LLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGA 59
Score = 37.7 bits (86), Expect = 0.017, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 17 DLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLA 76
D++A D + + PL A+ G ++ + +L+ G +VNA+D LY A
Sbjct: 60 DVNAVDTNGTTPLHL--------AASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYW 111
Query: 77 GHLDAARMLLESGA 90
GHL+ +LL+ GA
Sbjct: 112 GHLEIVEVLLKHGA 125
Score = 33.5 bits (75), Expect = 0.38, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 8/74 (10%)
Query: 17 DLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLA 76
D +A D PL A+ G ++ + +L +G +VNA D + L+ A
Sbjct: 27 DANAYDHYGRTPLHM--------AAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASL 78
Query: 77 GHLDAARMLLESGA 90
GHL+ +LL+ GA
Sbjct: 79 GHLEIVEVLLKYGA 92
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 50/87 (57%), Gaps = 3/87 (3%)
Query: 37 VFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGA-ICSEH 95
+ EA+RAG D +R ++ +G +VNA D L+ A ++GHL+ +LL+ GA + +
Sbjct: 18 LLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAAD 77
Query: 96 TFDGDRCHYAAL--NLKVRKLLKAYEA 120
+ H AA+ +L++ ++L Y A
Sbjct: 78 VYGFTPLHLAAMTGHLEIVEVLLKYGA 104
Score = 37.0 bits (84), Expect = 0.033, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 8/74 (10%)
Query: 17 DLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLA 76
D+DA+D PL A+ G ++ + +L+ G +VNA D S L+ A
Sbjct: 72 DVDAADVYGFTPLHL--------AAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADE 123
Query: 77 GHLDAARMLLESGA 90
GHL+ +LL+ GA
Sbjct: 124 GHLEIVEVLLKYGA 137
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To
Acrb: Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To
Acrb: Plasticity Of The Interface
Length = 169
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 34/54 (62%)
Query: 37 VFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGA 90
+ EA+RAG D +R ++ +G +VNARD L+ A GHL+ +LL++GA
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGA 71
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 8/74 (10%)
Query: 17 DLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLA 76
D++A DF+ PL A+ G ++ + +L++G +VNA+D L+ A
Sbjct: 39 DVNARDFTGWTPLHL--------AAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARR 90
Query: 77 GHLDAARMLLESGA 90
GHL+ +LL++GA
Sbjct: 91 GHLEIVEVLLKNGA 104
Score = 37.0 bits (84), Expect = 0.030, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 17 DLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLA 76
D++A D PL A+R G ++ + +L++G +VNA D L+ A
Sbjct: 72 DVNAKDSLGVTPLHL--------AARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKR 123
Query: 77 GHLDAARMLLESGA 90
GHL+ +LL++GA
Sbjct: 124 GHLEIVEVLLKNGA 137
Score = 29.3 bits (64), Expect = 5.6, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 8/69 (11%)
Query: 17 DLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLA 76
D++ASD PL A++ G ++ + +L++G +VNA+D++ A +
Sbjct: 105 DVNASDSHGFTPLHL--------AAKRGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDN 156
Query: 77 GHLDAARML 85
G+ D A +L
Sbjct: 157 GNEDLAEIL 165
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 8/74 (10%)
Query: 17 DLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLA 76
D++A D + PL A++ G ++ + +L+ G +VNARD W L+ A
Sbjct: 39 DVNAMDDAGVTPLHL--------AAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATV 90
Query: 77 GHLDAARMLLESGA 90
GHL+ +LLE GA
Sbjct: 91 GHLEIVEVLLEYGA 104
Score = 42.7 bits (99), Expect = 5e-04, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 32/54 (59%)
Query: 37 VFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGA 90
+ EA+RAG D +R ++ +G +VNA D L+ A GHL+ +LL+ GA
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA 71
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 37 VFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGA-ICSEH 95
+ EA+RAG D +R ++ +G +VNA D+ L+ A GHL+ +LL+ GA + +E
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAED 77
Query: 96 TFDGDRCHYAAL 107
F H AA+
Sbjct: 78 NFGITPLHLAAI 89
Score = 35.8 bits (81), Expect = 0.062, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 31/51 (60%)
Query: 40 ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGA 90
A++ G ++ + +L+ G +VNA D + L+ A + GHL+ +LL+ GA
Sbjct: 54 AAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGA 104
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 33/54 (61%)
Query: 37 VFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGA 90
+ EA+RAG D +R ++ +G +VNA D L+ A GHL+ +LL++GA
Sbjct: 18 LLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGA 71
Score = 38.1 bits (87), Expect = 0.014, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 9/92 (9%)
Query: 17 DLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLA 76
D++A D S PL A+ G ++ + +L++G +VNA D L A L
Sbjct: 39 DVNAEDASGWTPLHL--------AAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALF 90
Query: 77 GHLDAARMLLESGAICSEHTFDGDR-CHYAAL 107
GHL+ +LL++GA + + +G H AA+
Sbjct: 91 GHLEIVEVLLKNGADVNANDMEGHTPLHLAAM 122
Score = 38.1 bits (87), Expect = 0.015, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 8/74 (10%)
Query: 17 DLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLA 76
D++A D + PL+ A+ G ++ + +L++G +VNA D L+ A +
Sbjct: 72 DVNAVDHAGMTPLRL--------AALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMF 123
Query: 77 GHLDAARMLLESGA 90
GHL+ +LL++GA
Sbjct: 124 GHLEIVEVLLKNGA 137
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability
Of Designed Ankyrin Repeat Proteins With A Redesigned
C- Capping Module
Length = 91
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 35/54 (64%)
Query: 37 VFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGA 90
+ EA+RAG D +R ++ +G +VNA+D+ L+ A GHL+ +LL++GA
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 59
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To
Acrb: Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To
Acrb: Plasticity Of The Interface
Length = 169
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 33/54 (61%)
Query: 37 VFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGA 90
+ EA+RAG D +R ++ +G +VNA D L+ A GHL+ +LL++GA
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGA 71
Score = 36.2 bits (82), Expect = 0.047, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 8/83 (9%)
Query: 17 DLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLA 76
D++ASD PL A+ G ++ + +L++G +VNA D L+ A
Sbjct: 39 DVNASDHVGWTPLHL--------AAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAADR 90
Query: 77 GHLDAARMLLESGAICSEHTFDG 99
GHL+ +LL++GA + + +G
Sbjct: 91 GHLEVVEVLLKNGADVNANDHNG 113
Score = 33.1 bits (74), Expect = 0.46, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
Query: 17 DLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLA 76
D++A D PL A+ G ++ + +L++G +VNA D L+ A
Sbjct: 72 DVNADDSLGVTPLHL--------AADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANI 123
Query: 77 GHLDAARMLLESGA 90
GHL+ +LL+ GA
Sbjct: 124 GHLEIVEVLLKHGA 137
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 37 VFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHT 96
+ EA+ G+ DR++ +LE+G +VNA D L+ A GH + ++LL GA +
Sbjct: 8 LIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKD 67
Query: 97 FDGDR-CHYAALN--LKVRKLLKAYEARP 122
DG H AA N +V KLL + A P
Sbjct: 68 SDGKTPLHLAAENGHKEVVKLLLSQGADP 96
Score = 36.2 bits (82), Expect = 0.050, Method: Composition-based stats.
Identities = 35/122 (28%), Positives = 53/122 (43%), Gaps = 11/122 (9%)
Query: 4 NRQSTIDAELDEIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARD 63
N+ D + D++ASD PL A+ G + ++ +L G + NA+D
Sbjct: 16 NKDRVKDLLENGADVNASDSDGKTPLHL--------AAENGHKEVVKLLLSQGADPNAKD 67
Query: 64 QWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDR-CHYAALN--LKVRKLLKAYEA 120
L+ A GH + ++LL GA + DG H AA N +V KLL + A
Sbjct: 68 SDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGA 127
Query: 121 RP 122
P
Sbjct: 128 DP 129
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 8/83 (9%)
Query: 17 DLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLA 76
D +A D PL A+ G + ++ +L G + NA+D L+ A
Sbjct: 62 DPNAKDSDGKTPLHL--------AAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAEN 113
Query: 77 GHLDAARMLLESGAICSEHTFDG 99
GH + ++LL GA + DG
Sbjct: 114 GHKEVVKLLLSQGADPNTSDSDG 136
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Query: 40 ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99
AS GD+ + Y+L++G + N +D L+ AC GHL +LL+ A+ + +
Sbjct: 17 ASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQN 76
Query: 100 DR-CHYAALN--LKVRKLLKAYEA 120
D H AA N + + KLL +Y A
Sbjct: 77 DSPLHDAAKNGHVDIVKLLLSYGA 100
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 32/54 (59%)
Query: 37 VFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGA 90
+ EA+RAG D +R ++ +G +VNA D L+ A GHL+ +LL+ GA
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGA 71
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 30/107 (28%), Positives = 56/107 (52%), Gaps = 11/107 (10%)
Query: 17 DLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLA 76
D++A+D+ PL A++ G ++ + +L+ G +VNA D + + L+ A
Sbjct: 39 DVNATDWLGHTPLHL--------AAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAADN 90
Query: 77 GHLDAARMLLESGAICSEHTFDG-DRCHYAALN--LKVRKLLKAYEA 120
GHL+ +LL+ GA + ++G H AA + L++ ++L Y A
Sbjct: 91 GHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGA 137
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 37 VFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHT 96
+ EA+RAG D +R ++ +G +VNA D L+ A GHL+ +LL+ GA +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAID 77
Query: 97 FDGDR-CHYAAL 107
G H AAL
Sbjct: 78 IXGSTPLHLAAL 89
Score = 42.7 bits (99), Expect = 5e-04, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 17 DLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLA 76
D++A D S PL A+ G ++ + +L+ G +VNA D W L+ A +
Sbjct: 72 DVNAIDIXGSTPLHL--------AALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIM 123
Query: 77 GHLDAARMLLESGA 90
GHL+ +LL+ GA
Sbjct: 124 GHLEIVEVLLKHGA 137
Score = 39.3 bits (90), Expect = 0.006, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 9/92 (9%)
Query: 17 DLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLA 76
D++A+D S PL A+ G ++ + +L+ G +VNA D S L+ A L
Sbjct: 39 DVNATDASGLTPLHL--------AATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAALI 90
Query: 77 GHLDAARMLLESGA-ICSEHTFDGDRCHYAAL 107
GHL+ +LL+ GA + + T+ H AA+
Sbjct: 91 GHLEIVEVLLKHGADVNAVDTWGDTPLHLAAI 122
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 32/54 (59%)
Query: 37 VFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGA 90
+ EA+RAG D +R ++ +G +VNA D L+ A GHL+ +LL+ GA
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGA 71
Score = 42.4 bits (98), Expect = 7e-04, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 17 DLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLA 76
D++A D S PL A+ G ++ + +L+ G +VNA D W L+ A +
Sbjct: 72 DVNAIDIMGSTPLHL--------AALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIM 123
Query: 77 GHLDAARMLLESGA 90
GHL+ +LL+ GA
Sbjct: 124 GHLEIVEVLLKHGA 137
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 9/92 (9%)
Query: 17 DLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLA 76
D++A+D S PL A+ G ++ + +L+ G +VNA D S L+ A L
Sbjct: 39 DVNATDASGLTPLHL--------AATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAALI 90
Query: 77 GHLDAARMLLESGA-ICSEHTFDGDRCHYAAL 107
GHL+ +LL+ GA + + T+ H AA+
Sbjct: 91 GHLEIVEVLLKHGADVNAVDTWGDTPLHLAAI 122
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 33/54 (61%)
Query: 37 VFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGA 90
+ EA+RAG D +R ++ +G +VNA D L+ A GHL+ +LL++GA
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGA 71
Score = 37.0 bits (84), Expect = 0.032, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 8/83 (9%)
Query: 17 DLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLA 76
D++A+D PL A+ G ++ + +L++G +VNA D L+ A
Sbjct: 39 DVNATDNDGYTPLHL--------AASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAAT 90
Query: 77 GHLDAARMLLESGAICSEHTFDG 99
GHL+ +LL+ GA + + DG
Sbjct: 91 GHLEIVEVLLKHGADVNAYDNDG 113
Score = 36.6 bits (83), Expect = 0.035, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 8/74 (10%)
Query: 17 DLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLA 76
D++ASD + PL A+ G ++ + +L+ G +VNA D L+ A
Sbjct: 72 DVNASDLTGITPLHL--------AAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKY 123
Query: 77 GHLDAARMLLESGA 90
GHL+ +LL+ GA
Sbjct: 124 GHLEIVEVLLKHGA 137
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 37 VFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHT 96
+ EA+ G+ DR++ ++E+G +VNA D L++A GH + ++L+ GA +
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKD 67
Query: 97 FDGDR-CHYAALN 108
DG H+AA N
Sbjct: 68 SDGRTPLHHAAEN 80
Score = 38.5 bits (88), Expect = 0.011, Method: Composition-based stats.
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 9/106 (8%)
Query: 4 NRQSTIDAELDEIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARD 63
N+ D + D++ASD PL A+ G + ++ ++ G +VNA+D
Sbjct: 16 NKDRVKDLIENGADVNASDSDGRTPLH--------HAAENGHKEVVKLLISKGADVNAKD 67
Query: 64 QWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDR-CHYAALN 108
L++A GH + ++L+ GA + DG H+AA N
Sbjct: 68 SDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAEN 113
Score = 35.0 bits (79), Expect = 0.12, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 8/83 (9%)
Query: 17 DLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLA 76
D++A D PL A+ G + ++ ++ G +VNA+D L++A
Sbjct: 62 DVNAKDSDGRTPLH--------HAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAEN 113
Query: 77 GHLDAARMLLESGAICSEHTFDG 99
GH + ++L+ GA + DG
Sbjct: 114 GHKEVVKLLISKGADVNTSDSDG 136
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 42.7 bits (99), Expect = 5e-04, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 32/54 (59%)
Query: 37 VFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGA 90
+ EA+RAG D +R ++ +G +VNA D L+ A GHL+ +LL+ GA
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA 71
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 17 DLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLA 76
D++A D + PL A++ G ++ + +L+ G +VNA D W L+ A
Sbjct: 39 DVNAMDDAGVTPLHL--------AAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATV 90
Query: 77 GHLDAARMLLESGA 90
GHL+ +LLE GA
Sbjct: 91 GHLEIVEVLLEYGA 104
Score = 29.6 bits (65), Expect = 4.3, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 8/69 (11%)
Query: 17 DLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLA 76
D++ASD PL A+ G ++ + +LE G +VNA+D++ A +
Sbjct: 72 DVNASDIWGRTPLHL--------AATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDN 123
Query: 77 GHLDAARML 85
G+ D A +L
Sbjct: 124 GNEDLAEIL 132
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 32/54 (59%)
Query: 37 VFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGA 90
+ EA+RAG D +R ++ +G +VNA D L+ A GHL+ +LL+ GA
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA 71
Score = 28.9 bits (63), Expect = 8.4, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 8/69 (11%)
Query: 17 DLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLA 76
D++ASD PL A+ G ++ + +LE G +VNA+D++ A +
Sbjct: 72 DVNASDSWGRTPLHL--------AATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDN 123
Query: 77 GHLDAARML 85
G+ D A +L
Sbjct: 124 GNEDLAEIL 132
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 34/54 (62%)
Query: 37 VFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGA 90
+ EA+RAG D +R ++ +G +VNA D+ L+ A + HL+ +LL++GA
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGA 71
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 8/74 (10%)
Query: 17 DLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLA 76
D++A D PL D E + +L++G +VNA D L+ +
Sbjct: 39 DVNAEDKVGLTPLHLAAMNDHLEI--------VEVLLKNGADVNAIDAIGETPLHLVAMY 90
Query: 77 GHLDAARMLLESGA 90
GHL+ +LL+ GA
Sbjct: 91 GHLEIVEVLLKHGA 104
>pdb|3I3N|A Chain A, Crystal Structure Of The Btb-Back Domains Of Human Klhl11
pdb|3I3N|B Chain B, Crystal Structure Of The Btb-Back Domains Of Human Klhl11
Length = 279
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 55/123 (44%), Gaps = 19/123 (15%)
Query: 354 FRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKE------TFEKMI 407
FR H+ VLA+ +EYF LS F E + G +E S E T E +I
Sbjct: 47 FRAHRSVLAAATEYFTPLLS--GQFSESRSGR-------VEXRKWSSEPGPEPDTVEAVI 97
Query: 408 EYMYTDGLKDIDPDQAEEMFDAASRYLLFPLKRAVADVL--LLHL-EMVSPAELCHWLIL 464
EY YT ++ + E+ + A R+LL LK + L LHL V+ L H L
Sbjct: 98 EYXYTGRIR-VSTGSVHEVLELADRFLLIRLKEFCGEFLKKKLHLSNCVAIHSLAHXYTL 156
Query: 465 SDM 467
S +
Sbjct: 157 SQL 159
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed
By Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed
By Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 42.4 bits (98), Expect = 8e-04, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 33/54 (61%)
Query: 37 VFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGA 90
+ EA+RAG D +R ++ +G +VNA D L+ A GHL+ +LL++GA
Sbjct: 18 LLEAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGA 71
Score = 36.6 bits (83), Expect = 0.038, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 8/74 (10%)
Query: 17 DLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLA 76
D++A+D PL A+ G ++ + +L++G +VNA D S L+ A
Sbjct: 39 DVNAADVVGWTPLHL--------AAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHF 90
Query: 77 GHLDAARMLLESGA 90
GHL+ +LL++GA
Sbjct: 91 GHLEIVEVLLKNGA 104
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 37 VFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAI-CSEH 95
+ EA++ G++ LR L++ V VN D+ S ALY+AC GH D L I ++
Sbjct: 77 LHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELNQQ 136
Query: 96 TFDGDRCHYAA 106
GD +AA
Sbjct: 137 NKLGDTALHAA 147
>pdb|2NN2|A Chain A, Crystal Structure Of The Btb Domain From The LrfZBTB7
Transcriptional Regulator
pdb|2NN2|B Chain B, Crystal Structure Of The Btb Domain From The LrfZBTB7
Transcriptional Regulator
Length = 133
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 23/96 (23%), Positives = 48/96 (50%)
Query: 172 DVVFYVQGRPIEAHRVILSARSVFFRRKFETDWRYRNEIRFSREKLSYPALYGLIHFFYS 231
DVV V+GR HR +L+A S +F++ F + + + + +S AL L+ F Y+
Sbjct: 37 DVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEIDFVSAEALTALMDFAYT 96
Query: 232 DRLEIAVDDMEDLVKICKVCKCESLQRIIEKELIHQ 267
L ++ ++ D++ ++ + ++ + L Q
Sbjct: 97 ATLTVSTANVGDILSAARLLEIPAVSHVCADLLDRQ 132
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 45/88 (51%)
Query: 34 NGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICS 93
N + A++ G + ++ +L G +VNAR + + L+ A GH + ++LL GA +
Sbjct: 10 NTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVN 69
Query: 94 EHTFDGDRCHYAALNLKVRKLLKAYEAR 121
+ DG+ + A +++K +A+
Sbjct: 70 ARSKDGNTPEHLAKKNGHHEIVKLLDAK 97
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 40 ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99
A+RAG + +Y+L++ VNA+ + D L+ A GH + ++LLE+ A + T G
Sbjct: 54 AARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAG 113
Query: 100 DR-CHYAALNLKVRKLLKAYE 119
H AA V +L E
Sbjct: 114 HTPLHIAAREGHVETVLALLE 134
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 35/60 (58%)
Query: 40 ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99
AS G++ ++++L+ +VNA+ + L+ A GH D +LL++GA +E + DG
Sbjct: 318 ASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDG 377
Score = 32.0 bits (71), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 45/106 (42%), Gaps = 8/106 (7%)
Query: 40 ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99
A+R G + ++ +LE+ N N L+ A GH++ LLE A + T G
Sbjct: 87 AARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKG 146
Query: 100 -DRCHYAALNLKVR--KLLKAYEARPPPLG-----PLQAALRDTFL 137
H AA KVR +LL +A P G PL A+ L
Sbjct: 147 FTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNL 192
>pdb|2IF5|A Chain A, Structure Of The Poz Domain Of Human Lrf, A Master
Regulator Of Oncogenesis
Length = 120
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 46/88 (52%)
Query: 172 DVVFYVQGRPIEAHRVILSARSVFFRRKFETDWRYRNEIRFSREKLSYPALYGLIHFFYS 231
DVV V+GR HR +L+A S +F++ F + + + + +S AL L+ F Y+
Sbjct: 27 DVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEIDFVSAEALTALMDFAYT 86
Query: 232 DRLEIAVDDMEDLVKICKVCKCESLQRI 259
L ++ ++ D++ ++ + ++ +
Sbjct: 87 ATLTVSTANVGDILSAARLLEIPAVSHV 114
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 8/85 (9%)
Query: 17 DLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQW-DSVALYYACL 75
D+D D + PL ++ A R VD R +L V+VN D++ + AL++A L
Sbjct: 134 DVDMMDQNGMTPL-------MWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVL 186
Query: 76 AGHLDAARMLLESGAICSEHTFDGD 100
AG+ +LLE+GA G+
Sbjct: 187 AGNTTVISLLLEAGANVDAQNIKGE 211
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 33/59 (55%)
Query: 36 DVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSE 94
D+ +A++ G +R R ++E+G +V D+ + L++A + +D + + GAI +
Sbjct: 12 DIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQ 70
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%)
Query: 40 ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICS 93
A+R G D +R ++E+GV+ ++++ AL+ AC G +D A+ L G + S
Sbjct: 27 AARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHS 80
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 38.9 bits (89), Expect = 0.008, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 38/81 (46%)
Query: 40 ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99
A G D ++ +L+ GV+VN D L YA H+ +MLLESGA + T G
Sbjct: 76 ACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSG 135
Query: 100 DRCHYAALNLKVRKLLKAYEA 120
A+ L R + + E+
Sbjct: 136 YNSMDLAVALGYRSVQQVIES 156
Score = 33.1 bits (74), Expect = 0.48, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 32/60 (53%)
Query: 40 ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99
A+ G + + ++L++G + + AL AC G+ D +MLL+ G +E+ ++G
Sbjct: 43 AAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNG 102
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 38.9 bits (89), Expect = 0.008, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 38/81 (46%)
Query: 40 ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99
A G D ++ +L+ GV+VN D L YA H+ +MLLESGA + T G
Sbjct: 74 ACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSG 133
Query: 100 DRCHYAALNLKVRKLLKAYEA 120
A+ L R + + E+
Sbjct: 134 YNSMDLAVALGYRSVQQVIES 154
Score = 33.1 bits (74), Expect = 0.48, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 32/60 (53%)
Query: 40 ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99
A+ G + + ++L++G + + AL AC G+ D +MLL+ G +E+ ++G
Sbjct: 41 AAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNG 100
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 38.9 bits (89), Expect = 0.008, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 38/81 (46%)
Query: 40 ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99
A G D ++ +L+ GV+VN D L YA H+ +MLLESGA + T G
Sbjct: 92 ACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSG 151
Query: 100 DRCHYAALNLKVRKLLKAYEA 120
A+ L R + + E+
Sbjct: 152 YNSMDLAVALGYRSVQQVIES 172
Score = 33.1 bits (74), Expect = 0.49, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 32/60 (53%)
Query: 40 ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99
A+ G + + ++L++G + + AL AC G+ D +MLL+ G +E+ ++G
Sbjct: 59 AAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNG 118
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 38.9 bits (89), Expect = 0.008, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 30/46 (65%)
Query: 46 VDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAI 91
V + Y+L+ G +V+A+D+ V L+ AC GH + A +L++ GA+
Sbjct: 57 VSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAV 102
Score = 32.3 bits (72), Expect = 0.72, Method: Composition-based stats.
Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 9/98 (9%)
Query: 4 NRQSTIDAELDE-IDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNAR 62
NR S ++ L D+ A D VPL A G + +++ G VN
Sbjct: 55 NRVSVVEYLLQHGADVHAKDKGGLVPLHN--------ACSYGHYEVAELLVKHGAVVNVA 106
Query: 63 DQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGD 100
D W L+ A G + ++LL+ GA ++ DG+
Sbjct: 107 DLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGN 144
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 30/46 (65%)
Query: 46 VDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAI 91
V + Y+L+ G +V+A+D+ V L+ AC GH + A +L++ GA+
Sbjct: 55 VSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAV 100
Score = 32.3 bits (72), Expect = 0.79, Method: Composition-based stats.
Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 9/98 (9%)
Query: 4 NRQSTIDAELDE-IDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNAR 62
NR S ++ L D+ A D VPL A G + +++ G VN
Sbjct: 53 NRVSVVEYLLQHGADVHAKDKGGLVPLHN--------ACSYGHYEVAELLVKHGAVVNVA 104
Query: 63 DQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGD 100
D W L+ A G + ++LL+ GA ++ DG+
Sbjct: 105 DLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGN 142
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 30/46 (65%)
Query: 46 VDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAI 91
V + Y+L+ G +V+A+D+ V L+ AC GH + A +L++ GA+
Sbjct: 59 VSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAV 104
Score = 32.3 bits (72), Expect = 0.82, Method: Composition-based stats.
Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 9/98 (9%)
Query: 4 NRQSTIDAELDE-IDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNAR 62
NR S ++ L D+ A D VPL A G + +++ G VN
Sbjct: 57 NRVSVVEYLLQHGADVHAKDKGGLVPLHN--------ACSYGHYEVAELLVKHGAVVNVA 108
Query: 63 DQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGD 100
D W L+ A G + ++LL+ GA ++ DG+
Sbjct: 109 DLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGN 146
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase
Aph (3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase
Aph (3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 38.5 bits (88), Expect = 0.010, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 31/54 (57%)
Query: 37 VFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGA 90
+ EA+RAG D +R ++ +G +VNA D + L+ GHL+ +LL+ A
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAA 71
Score = 35.0 bits (79), Expect = 0.11, Method: Composition-based stats.
Identities = 30/107 (28%), Positives = 52/107 (48%), Gaps = 11/107 (10%)
Query: 17 DLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLA 76
D++A+D+ PL V N G ++ + +L+ +VNA D+ L+ A
Sbjct: 39 DVNANDWFGITPLHLVVNN--------GHLEIIEVLLKYAADVNASDKSGWTPLHLAAYR 90
Query: 77 GHLDAARMLLESGAICSEHTFDG-DRCHYAALN--LKVRKLLKAYEA 120
GHL+ +LL+ GA + + G H AA + L++ ++L Y A
Sbjct: 91 GHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGA 137
>pdb|2Z8H|A Chain A, Structure Of Mouse Bach1 Btb Domain
Length = 138
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 10/76 (13%)
Query: 340 DDLADVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLS 399
D L DV V V+ + FR H+ VLA+ S YF +R+ D E LP ++ +
Sbjct: 34 DVLCDVTVLVEGQRFRAHRSVLAACSSYFHSRIVGQTD-AELTVTLPEEV---------T 83
Query: 400 KETFEKMIEYMYTDGL 415
+ FE +I++ YT L
Sbjct: 84 VKGFEPLIQFAYTAKL 99
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 11/84 (13%)
Query: 172 DVVFYVQGRPIEAHRVILSARSVFFRRKF--ETDWRYRNEIRFSREKLSYPALYGLIHFF 229
DV V+G+ AHR +L+A S +F + +TD + E+++ LI F
Sbjct: 38 DVTVLVEGQRFRAHRSVLAACSSYFHSRIVGQTDAELTVTL---PEEVTVKGFEPLIQFA 94
Query: 230 YSDRLEIAVDDMEDLVKICKVCKC 253
Y+ +L ++ D++++ VC+C
Sbjct: 95 YTAKLILSKDNVDE------VCRC 112
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 14/78 (17%)
Query: 16 IDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYI---LESGVNVNARDQWDSVALYY 72
++ ASD S PL A +R+R + L+ G +V+A+D+ V L+
Sbjct: 49 VNCHASDGRKSTPLH-----------LAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHN 97
Query: 73 ACLAGHLDAARMLLESGA 90
AC GH + +LL+ GA
Sbjct: 98 ACSYGHYEVTELLLKHGA 115
Score = 35.8 bits (81), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 40 ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGA 90
A RA + D + + + G +NA D AL+ A LAGHL R+LL G+
Sbjct: 255 AERAHN-DVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGS 304
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 29/74 (39%), Gaps = 8/74 (10%)
Query: 17 DLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLA 76
D+ A D VPL A G + +L+ G VNA D W L+ A
Sbjct: 83 DVHAKDKGGLVPL--------HNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASK 134
Query: 77 GHLDAARMLLESGA 90
++ +LL GA
Sbjct: 135 NRVEVCSLLLSHGA 148
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%)
Query: 40 ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99
A+ G D + +L+ G N AR+ +V L+ AC GH + LL+S A ++ G
Sbjct: 93 AALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSG 152
Query: 100 D 100
+
Sbjct: 153 N 153
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 32/68 (47%)
Query: 40 ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99
A + G ++ +L+S N +D + L YAC GH + +LL+ GA + G
Sbjct: 126 ACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKG 185
Query: 100 DRCHYAAL 107
+ + A+
Sbjct: 186 NTALHEAV 193
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 37.4 bits (85), Expect = 0.023, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 31/54 (57%)
Query: 37 VFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGA 90
+ EA+ AG D +R ++ +G +VNA D L+ A G L+ +LL++GA
Sbjct: 10 LLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGA 63
Score = 35.8 bits (81), Expect = 0.070, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 8/74 (10%)
Query: 17 DLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLA 76
D++ASD + PL A+ G ++ + +L+ G +VNA D+ L+ A L+
Sbjct: 64 DVNASDSAGITPLHL--------AAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALS 115
Query: 77 GHLDAARMLLESGA 90
G L+ +LL+ GA
Sbjct: 116 GQLEIVEVLLKHGA 129
Score = 35.8 bits (81), Expect = 0.071, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 12/93 (12%)
Query: 17 DLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLA 76
D++A+D + PL A+ G ++ + +L++G +VNA D L+ A
Sbjct: 31 DVNATDDNGLTPLHL--------AAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYD 82
Query: 77 GHLDAARMLLESGAICSEHTFDGDRCHYAALNL 109
GHL+ +LL+ GA + + DR + L+L
Sbjct: 83 GHLEIVEVLLKHGADVNAY----DRAGWTPLHL 111
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 45 DVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGD 100
+VD +++++E+G N+N D + L+ A G+LD A L+ GA +GD
Sbjct: 85 NVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGD 140
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 15 EIDLDASDFSSSVPLKKVPNGDVF-EASRAGDVDRLRYILESGVNVNARDQWDSVALYYA 73
E DL+ K +G VF A +GD + + +LE G ++N + AL+ A
Sbjct: 21 ETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQA 80
Query: 74 CLAGHLDAARMLLESGAICSEHTFDG 99
C+ ++D + L+E+GA ++ +G
Sbjct: 81 CIDDNVDMVKFLVENGANINQPDNEG 106
>pdb|3GA1|A Chain A, Crystal Structure Of The Human Nac1 Poz Domain
pdb|3GA1|B Chain B, Crystal Structure Of The Human Nac1 Poz Domain
Length = 129
Score = 37.0 bits (84), Expect = 0.035, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 6/91 (6%)
Query: 172 DVVFYVQGRPIEAHRVILSARSVFFRRKFETDWRYRNEIRFSREKLSYPALYGLIHFFYS 231
DV V+G +AHR +L+A S +FR F E+ + + S+ ++ F Y+
Sbjct: 35 DVSVVVKGHAFKAHRAVLAASSSYFRDLFNNSRSAVVELPAAVQPQSFQQ---ILSFCYT 91
Query: 232 DRLEIAVDDMEDLVKICKVCKCESLQRIIEK 262
RL + V D + L+ + +Q I+EK
Sbjct: 92 GRLSMNVGDQDLLMYTAGFLQ---IQEIMEK 119
Score = 31.2 bits (69), Expect = 1.6, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 12/87 (13%)
Query: 344 DVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKETF 403
DV V V F+ H+ VLA+ S YF+ + + LP + P ++F
Sbjct: 35 DVSVVVKGHAFKAHRAVLAASSSYFRDLFNNSR---SAVVELPAAVQP---------QSF 82
Query: 404 EKMIEYMYTDGLKDIDPDQAEEMFDAA 430
++++ + YT L DQ M+ A
Sbjct: 83 QQILSFCYTGRLSMNVGDQDLLMYTAG 109
>pdb|2IHC|A Chain A, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
pdb|2IHC|B Chain B, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
pdb|2IHC|C Chain C, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
pdb|2IHC|D Chain D, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
Length = 124
Score = 36.2 bits (82), Expect = 0.052, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 10/76 (13%)
Query: 340 DDLADVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLS 399
D L DV + V+ + FR H+ VLA+ S YF +R+ D G++ + E +++
Sbjct: 27 DVLCDVTIFVEGQRFRAHRSVLAACSSYFHSRIVGQAD---------GELNITLPE-EVT 76
Query: 400 KETFEKMIEYMYTDGL 415
+ FE +I++ YT L
Sbjct: 77 VKGFEPLIQFAYTAKL 92
Score = 34.3 bits (77), Expect = 0.17, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 7/82 (8%)
Query: 172 DVVFYVQGRPIEAHRVILSARSVFFRRKFETDWRYRNEIRFSREKLSYPALYGLIHFFYS 231
DV +V+G+ AHR +L+A S +F + I E+++ LI F Y+
Sbjct: 31 DVTIFVEGQRFRAHRSVLAACSSYFHSRIVGQADGELNITLP-EEVTVKGFEPLIQFAYT 89
Query: 232 DRLEIAVDDMEDLVKICKVCKC 253
+L ++ +++++ VCKC
Sbjct: 90 AKLILSKENVDE------VCKC 105
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 35.8 bits (81), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Query: 40 ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAI--CSEHTF 97
A+ AG + ++ +L G +VNA +Q L+YA + A MLLE GA +H +
Sbjct: 80 AASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDH-Y 138
Query: 98 DGDRCHYAAL--NLKVRKLLKAYEA 120
D H AA NLK+ +L Y+A
Sbjct: 139 DATAMHRAAAKGNLKMVHILLFYKA 163
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 35.8 bits (81), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 37 VFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGH 78
V +A+R G +D L+ ++E G +VNA D S+ ++ A GH
Sbjct: 78 VHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGH 119
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 35.8 bits (81), Expect = 0.068, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 30/54 (55%)
Query: 37 VFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGA 90
+ +A+RAG +D L+ +LE +VN D ++ L+ A GHL L++ A
Sbjct: 74 IHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTA 127
>pdb|1CS3|A Chain A, Structure Of BtbPOZ TRANSCRIPTION REPRESSION DOMAIN FROM
PROMELOCYTIC Leukemia Zinc Finger Oncoprotein
Length = 116
Score = 35.8 bits (81), Expect = 0.068, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Query: 172 DVVFYVQGRPIEAHRVILSARSVFFRRKFETDWRYRNEIRFSREKLSYPALYGLIHFFYS 231
DVV V + AHR +L+ S F F +RN ++ + LS ++ + Y+
Sbjct: 29 DVVIMVDSQEFHAHRTVLACTSKMFEILF-----HRNSQHYTLDFLSPKTFQQILEYAYT 83
Query: 232 DRLEIAVDDMEDLV 245
L+ +D++DL+
Sbjct: 84 ATLQAKAEDLDDLL 97
Score = 35.4 bits (80), Expect = 0.079, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 14/88 (15%)
Query: 342 LADVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKE 401
L DV + VD + F H+ VLA S+ F+ R Y LS +
Sbjct: 27 LCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRNSQHYT--------------LDFLSPK 72
Query: 402 TFEKMIEYMYTDGLKDIDPDQAEEMFDA 429
TF++++EY YT L+ D + ++ A
Sbjct: 73 TFQQILEYAYTATLQAKAEDLDDLLYAA 100
>pdb|1BUO|A Chain A, Btb Domain From Plzf
Length = 121
Score = 35.8 bits (81), Expect = 0.068, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Query: 172 DVVFYVQGRPIEAHRVILSARSVFFRRKFETDWRYRNEIRFSREKLSYPALYGLIHFFYS 231
DVV V + AHR +L+ S F F +RN ++ + LS ++ + Y+
Sbjct: 30 DVVIMVDSQEFHAHRTVLACTSKMFEILF-----HRNSQHYTLDFLSPKTFQQILEYAYT 84
Query: 232 DRLEIAVDDMEDLV 245
L+ +D++DL+
Sbjct: 85 ATLQAKAEDLDDLL 98
Score = 35.4 bits (80), Expect = 0.080, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 14/88 (15%)
Query: 342 LADVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKE 401
L DV + VD + F H+ VLA S+ F+ R Y LS +
Sbjct: 28 LCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRNSQHYT--------------LDFLSPK 73
Query: 402 TFEKMIEYMYTDGLKDIDPDQAEEMFDA 429
TF++++EY YT L+ D + ++ A
Sbjct: 74 TFQQILEYAYTATLQAKAEDLDDLLYAA 101
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 35.8 bits (81), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 37 VFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGH 78
V +A+R G +D L+ ++E G +VNA D S+ ++ A GH
Sbjct: 80 VHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGH 121
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 35.8 bits (81), Expect = 0.071, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 31/54 (57%)
Query: 37 VFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGA 90
+ +A+RAG +D L+ +LE+ +VN D ++ L+ A GHL L++ A
Sbjct: 74 IHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTA 127
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 35.8 bits (81), Expect = 0.076, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 37/77 (48%)
Query: 40 ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99
A+ G ++ L ++L G ++NA D+ L A GH+ ++LL GA + DG
Sbjct: 47 AADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDG 106
Query: 100 DRCHYAALNLKVRKLLK 116
A N ++ LL+
Sbjct: 107 LTAFEATDNQAIKALLQ 123
Score = 28.9 bits (63), Expect = 8.0, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 30/63 (47%)
Query: 28 PLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLE 87
PL + + + A + GD+D ++ + G +VN + L+YA G L+ LL
Sbjct: 2 PLGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLL 61
Query: 88 SGA 90
GA
Sbjct: 62 KGA 64
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 35.8 bits (81), Expect = 0.077, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 31/57 (54%)
Query: 34 NGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGA 90
N + +A+RAG +D L+ +LE +VN D ++ L+ A GHL L++ A
Sbjct: 71 NAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTA 127
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 35.4 bits (80), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Query: 40 ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAI--CSEHTF 97
A+ AG + ++ +L G +VNA +Q L+YA + A MLLE GA +H +
Sbjct: 80 AASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDH-Y 138
Query: 98 DGDRCHYAAL--NLKVRKLLKAYEA 120
D H AA NLK+ +L Y+A
Sbjct: 139 DATAMHRAAAKGNLKMVHILLFYKA 163
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 10/84 (11%)
Query: 15 EIDLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYAC 74
++D++ D P+ A+ VD ++ +L G ++N RD +++ L++A
Sbjct: 101 QMDVNCQDDGGWTPM--------IWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAA 152
Query: 75 LAGHLDAARMLLESGAICSEHTFD 98
+G +D A +LL A C H +
Sbjct: 153 FSGCVDIAEILL--AAKCDLHAVN 174
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 40 ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99
A+ AG VD ++++G N++ + L A HL+A + L+++GA+ +G
Sbjct: 18 AAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEG 77
Query: 100 DRC-HYAA 106
C H AA
Sbjct: 78 STCLHLAA 85
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 31/55 (56%)
Query: 37 VFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAI 91
+ EA+ ++ ++Y++++G V+ +D S L+ A GH + + LL +G +
Sbjct: 48 LMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQM 102
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 46/106 (43%), Gaps = 7/106 (6%)
Query: 17 DLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLA 76
D+DA D S + P + A + ++ +L+ G NVNA+ S AL+ A
Sbjct: 141 DIDAVDIKSG----RSP---LIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGR 193
Query: 77 GHLDAARMLLESGAICSEHTFDGDRCHYAALNLKVRKLLKAYEARP 122
G L R L+ SGA S D A + +V +L+ RP
Sbjct: 194 GLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRP 239
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 35.0 bits (79), Expect = 0.13, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 37/77 (48%)
Query: 40 ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDG 99
A+ G ++ L ++L G ++NA D+ L A GH+ ++LL GA + DG
Sbjct: 42 AADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDG 101
Query: 100 DRCHYAALNLKVRKLLK 116
A N ++ LL+
Sbjct: 102 LTALEATDNQAIKALLQ 118
>pdb|3HTM|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|C Chain C, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|D Chain D, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
Length = 172
Score = 34.7 bits (78), Expect = 0.13, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 68/140 (48%), Gaps = 13/140 (9%)
Query: 342 LADVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKE 401
D C+ V + F+ H+ +LA+RS F A + E K+ +E +D+ E
Sbjct: 34 FTDCCLCVAGQEFQAHKAILAARSPVFSAXFEHEXE--ESKKNR-------VEINDVEPE 84
Query: 402 TFEKMIEYMYTDGLKDIDPDQAEEMFDAASRYLLFPLKRAVADVLLLHLEMVSPAELCHW 461
F++ ++YT G A+++ AA +Y L LK D L +L + + AE+
Sbjct: 85 VFKEXXCFIYT-GKAPNLDKXADDLLAAADKYALERLKVXCEDALCSNLSVENAAEI--- 140
Query: 462 LILSDMYGVFKVREYCLEVI 481
LIL+D++ +++ ++ I
Sbjct: 141 LILADLHSADQLKTQAVDFI 160
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 62/129 (48%), Gaps = 15/129 (11%)
Query: 40 ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAI--CSEHTF 97
A+ AG + ++ +L G VNA +Q L+YA + A MLLE GA +H +
Sbjct: 80 AASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDH-Y 138
Query: 98 DGDRCHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANRQFLEEAEVVLGI 155
+ H AA NLK+ +L Y+A +Q +T L + + +EEA++++
Sbjct: 139 EATAMHRAAAKGNLKMIHILLYYKAST----NIQDTEGNTPLHLACDEERVEEAKLLV-- 192
Query: 156 SGVTSNGAS 164
S GAS
Sbjct: 193 ----SQGAS 197
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 62/129 (48%), Gaps = 15/129 (11%)
Query: 40 ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAI--CSEHTF 97
A+ AG + ++ +L G VNA +Q L+YA + A MLLE GA +H +
Sbjct: 81 AASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDH-Y 139
Query: 98 DGDRCHYAAL--NLKVRKLLKAYEARPPPLGPLQAALRDTFLGCGANRQFLEEAEVVLGI 155
+ H AA NLK+ +L Y+A +Q +T L + + +EEA++++
Sbjct: 140 EATAMHRAAAKGNLKMIHILLYYKAST----NIQDTEGNTPLHLACDEERVEEAKLLV-- 193
Query: 156 SGVTSNGAS 164
S GAS
Sbjct: 194 ----SQGAS 198
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 34.7 bits (78), Expect = 0.17, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 30/54 (55%)
Query: 37 VFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGA 90
+ +A+RAG +D L+ +LE +VN D ++ L+ A GHL L++ A
Sbjct: 74 IHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTA 127
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 34.3 bits (77), Expect = 0.18, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 30/54 (55%)
Query: 37 VFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGA 90
+ +A+RAG +D L+ +LE +VN D ++ L+ A GHL L++ A
Sbjct: 74 IHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTA 127
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 43 AGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFD---- 98
AG + ++++++ GVNVNA D L+ A ++ + L+ESGA T+
Sbjct: 80 AGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQT 139
Query: 99 -GDRC 102
D+C
Sbjct: 140 AADKC 144
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 43 AGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFD---- 98
AG + ++++++ GVNVNA D L+ A ++ + L+ESGA T+
Sbjct: 80 AGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQT 139
Query: 99 -GDRC 102
D+C
Sbjct: 140 AADKC 144
>pdb|3OHU|A Chain A, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|B Chain B, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|C Chain C, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|D Chain D, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|E Chain E, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|F Chain F, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHV|A Chain A, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|B Chain B, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|C Chain C, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|D Chain D, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|E Chain E, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|F Chain F, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
Length = 125
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 12/77 (15%)
Query: 340 DDLADVCVRVDKKIFRCHQVVLASRSEYF-KARLSRMKDFYEGKEGLPGDILPCIEEHDL 398
D L DV + V++K FR H+ VLA+ SEYF +A + + K+ D++ + E ++
Sbjct: 30 DILCDVTLIVERKEFRAHRAVLAACSEYFWQALVGQTKN----------DLVVSLPE-EV 78
Query: 399 SKETFEKMIEYMYTDGL 415
+ F ++++ YT L
Sbjct: 79 TARGFGPLLQFAYTAKL 95
>pdb|2VPK|A Chain A, Crystal Structure Of The Btb Domain Of Human Myoneurin
Length = 116
Score = 33.9 bits (76), Expect = 0.27, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 58/119 (48%), Gaps = 23/119 (19%)
Query: 314 NMDHNIDNGICKLSSSVEAMHISDHVDDLADVCVRVDKKIFRCHQVVLASRSEYFKA--R 371
+M H+ ++ + +L+ EA L D + + + F+ H+ VLAS SEYF A R
Sbjct: 1 SMSHHCEHLLERLNKQREAGF-------LCDCTIVIGEFQFKAHRNVLASFSEYFGAIYR 53
Query: 372 LSRMKDFYEGKEGLPGDILPCIEEHDLSKETFEKMIEYMYTDGLKDIDPDQAEEMFDAA 430
+ + + +++ + + F+K++E++YT G ++D +E+ AA
Sbjct: 54 STSENNVF-------------LDQSQVKADGFQKLLEFIYT-GTLNLDSWNVKEIHQAA 98
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With
Elonginb And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With
Elonginb And Elonginc
Length = 261
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%)
Query: 37 VFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGA 90
+ EA+ G LR ++ G VN L+ ACL GHL ++LL+ GA
Sbjct: 7 MHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGA 60
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%)
Query: 37 VFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGA 90
+ EA+R G V+ + ++ G N++ + LY AC + LLESGA
Sbjct: 105 IHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGA 158
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 30/62 (48%)
Query: 37 VFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHT 96
+ EA+ G LR ++ G VN L+ ACL GHL ++LL+ GA + T
Sbjct: 63 MHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVT 122
Query: 97 FD 98
D
Sbjct: 123 AD 124
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%)
Query: 37 VFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGA 90
+ EA+R G V+ + ++ G N++ + LY AC + LLESGA
Sbjct: 161 IHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGA 214
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 29/54 (53%)
Query: 37 VFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGA 90
+ +A+ A + ++L++G NVN D L++A + GH A + L+ GA
Sbjct: 239 LIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGA 292
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 29/54 (53%)
Query: 37 VFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGA 90
+ +A+ A + ++L++G NVN D L++A + GH A + L+ GA
Sbjct: 239 LIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGA 292
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 29/54 (53%)
Query: 37 VFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGA 90
+ +A+ A + ++L++G NVN D L++A + GH A + L+ GA
Sbjct: 239 LIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGA 292
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 54/124 (43%), Gaps = 24/124 (19%)
Query: 349 VDKKIFRCHQVVLASRSEYFKARLSRMKDFYE----GKEGLPGDIL------PCIEEHDL 398
D+++FRC V +S ++ L K+ E K L IL P + E
Sbjct: 347 TDEQLFRCELSV--EKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYE--- 401
Query: 399 SKETFEKMIEYMYTDGLKDIDPDQAEEMFDAASRYLL--FPLKRAVADVLLLHLEMVSPA 456
KET + Y LK +DP +A + D S++LL LK ADV +LHL
Sbjct: 402 -KETLQ------YFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT 454
Query: 457 ELCH 460
LCH
Sbjct: 455 VLCH 458
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 54/124 (43%), Gaps = 24/124 (19%)
Query: 349 VDKKIFRCHQVVLASRSEYFKARLSRMKDFYE----GKEGLPGDIL------PCIEEHDL 398
D+++FRC V +S ++ L K+ E K L IL P + E
Sbjct: 347 TDEQLFRCELSV--EKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYE--- 401
Query: 399 SKETFEKMIEYMYTDGLKDIDPDQAEEMFDAASRYLL--FPLKRAVADVLLLHLEMVSPA 456
KET + Y LK +DP +A + D S++LL LK ADV +LHL
Sbjct: 402 -KETLQ------YFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT 454
Query: 457 ELCH 460
LCH
Sbjct: 455 VLCH 458
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 31/54 (57%)
Query: 40 ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICS 93
A+ G D ++ +L+ ++NA ++ +V L+YAC G A L+ +GA+ S
Sbjct: 79 AASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVS 132
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 31/54 (57%)
Query: 40 ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICS 93
A+ G D ++ +L+ ++NA ++ +V L+YAC G A L+ +GA+ S
Sbjct: 74 AASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVS 127
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 32.3 bits (72), Expect = 0.78, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 31/60 (51%)
Query: 31 KVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGA 90
KV + A+ G + + +L+ G +VNA+D AL++A H + +L++ GA
Sbjct: 65 KVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGA 124
Score = 30.8 bits (68), Expect = 2.1, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 27/51 (52%)
Query: 40 ASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGA 90
A++ G +L +GV+ +AR + D L+ A GH + +LL+ GA
Sbjct: 41 AAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGA 91
>pdb|2Q81|A Chain A, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|B Chain B, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|C Chain C, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|D Chain D, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
Length = 119
Score = 32.0 bits (71), Expect = 0.86, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 17/91 (18%)
Query: 342 LADVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKE 401
L D VD F+ H+ VLA+ SEYFK KD + D+S
Sbjct: 27 LCDCTFVVDGVHFKAHKAVLAACSEYFKMLFVDQKD---------------VVHLDISNA 71
Query: 402 T-FEKMIEYMYTDGLKDIDPDQAEEMFDAAS 431
+++E+MYT L + P+ +++ A+
Sbjct: 72 AGLGQVLEFMYTAKLS-LSPENVDDVLAVAT 101
Score = 28.9 bits (63), Expect = 9.2, Method: Composition-based stats.
Identities = 18/76 (23%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 172 DVVFYVQGRPIEAHRVILSARSVFFRRKFETDWRYRNEIRFSREKLSYPALYGLIHFFYS 231
D F V G +AH+ +L+A S +F+ F D + + S + L ++ F Y+
Sbjct: 29 DCTFVVDGVHFKAHKAVLAACSEYFKMLF-VDQKDVVHLDIS----NAAGLGQVLEFMYT 83
Query: 232 DRLEIAVDDMEDLVKI 247
+L ++ ++++D++ +
Sbjct: 84 AKLSLSPENVDDVLAV 99
>pdb|3M52|A Chain A, Crystal Structure Of The Btb Domain From The Miz-1ZBTB17
Transcription Regulator
pdb|3M52|B Chain B, Crystal Structure Of The Btb Domain From The Miz-1ZBTB17
Transcription Regulator
Length = 117
Score = 32.0 bits (71), Expect = 0.99, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 17/91 (18%)
Query: 342 LADVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKE 401
L D VD F+ H+ VLA+ SEYFK KD + D+S
Sbjct: 25 LCDCTFVVDGVHFKAHKAVLAACSEYFKMLFVDQKD---------------VVHLDISNA 69
Query: 402 T-FEKMIEYMYTDGLKDIDPDQAEEMFDAAS 431
+++E+MYT L + P+ +++ A+
Sbjct: 70 AGLGQVLEFMYTAKLS-LSPENVDDVLAVAT 99
Score = 28.5 bits (62), Expect = 9.9, Method: Composition-based stats.
Identities = 18/76 (23%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 172 DVVFYVQGRPIEAHRVILSARSVFFRRKFETDWRYRNEIRFSREKLSYPALYGLIHFFYS 231
D F V G +AH+ +L+A S +F+ F D + + S + L ++ F Y+
Sbjct: 27 DCTFVVDGVHFKAHKAVLAACSEYFKMLF-VDQKDVVHLDIS----NAAGLGQVLEFMYT 81
Query: 232 DRLEIAVDDMEDLVKI 247
+L ++ ++++D++ +
Sbjct: 82 AKLSLSPENVDDVLAV 97
>pdb|3M8V|A Chain A, Crystal Structure Of The Btb Domain From KaisoZBTB33, FORM
II
pdb|3M4T|A Chain A, Crystal Structure Of The Btb Domain From KaisoZBTB33, FORM
I
Length = 124
Score = 31.6 bits (70), Expect = 1.2, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 6/76 (7%)
Query: 172 DVVFYVQGRPIEAHRVILSARSVFFRRKFETDWRYRNEIRFSREKLSYPALYGLIHFFYS 231
DV V+ R AH+ ILSA S +F + F + E+ F R ++ ++++ YS
Sbjct: 35 DVTVIVEDRKFRAHKNILSASSTYFHQLFSVAGQVV-ELSFIRAEI----FAEILNYIYS 89
Query: 232 DRL-EIAVDDMEDLVK 246
++ + D +++L+K
Sbjct: 90 SKIVRVRSDLLDELIK 105
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 20/87 (22%), Positives = 40/87 (45%), Gaps = 14/87 (16%)
Query: 344 DVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKETF 403
DV V V+ + FR H+ +L++ S YF S + G + +E + E F
Sbjct: 35 DVTVIVEDRKFRAHKNILSASSTYFHQLFS-----------VAGQV---VELSFIRAEIF 80
Query: 404 EKMIEYMYTDGLKDIDPDQAEEMFDAA 430
+++ Y+Y+ + + D +E+ +
Sbjct: 81 AEILNYIYSSKIVRVRSDLLDELIKSG 107
>pdb|3FKC|A Chain A, Crystal Structure Of Human Zinc Finger And Btb Domain
Containing 33
Length = 116
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 6/76 (7%)
Query: 172 DVVFYVQGRPIEAHRVILSARSVFFRRKFETDWRYRNEIRFSREKLSYPALYGLIHFFYS 231
DV V+ R AH+ ILSA S +F + F + E+ F R ++ ++++ YS
Sbjct: 33 DVTVIVEDRKFRAHKNILSASSTYFHQLFSVAGQVV-ELSFIRAEI----FAEILNYIYS 87
Query: 232 DRL-EIAVDDMEDLVK 246
++ + D +++L+K
Sbjct: 88 SKIVRVRSDLLDELIK 103
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 20/87 (22%), Positives = 40/87 (45%), Gaps = 14/87 (16%)
Query: 344 DVCVRVDKKIFRCHQVVLASRSEYFKARLSRMKDFYEGKEGLPGDILPCIEEHDLSKETF 403
DV V V+ + FR H+ +L++ S YF S + G + +E + E F
Sbjct: 33 DVTVIVEDRKFRAHKNILSASSTYFHQLFS-----------VAGQV---VELSFIRAEIF 78
Query: 404 EKMIEYMYTDGLKDIDPDQAEEMFDAA 430
+++ Y+Y+ + + D +E+ +
Sbjct: 79 AEILNYIYSSKIVRVRSDLLDELIKSG 105
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 26/49 (53%)
Query: 52 ILESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGD 100
+L G NVN +D L ++ + G+ + + LLE GA ++ +G+
Sbjct: 87 LLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGE 135
Score = 28.5 bits (62), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 8/83 (9%)
Query: 17 DLDASDFSSSVPLKKVPNGDVFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLA 76
+++ DFS PL +F G + ++LE G NVN R+ L A
Sbjct: 93 NVNTKDFSGKTPLMWSI---IF-----GYSEMSYFLLEHGANVNDRNLEGETPLIVASKY 144
Query: 77 GHLDAARMLLESGAICSEHTFDG 99
G + + LLE GA S G
Sbjct: 145 GRSEIVKKLLELGADISARDLTG 167
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 25/42 (59%)
Query: 37 VFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGH 78
V +A+R G +D L+ ++E G +VN D ++ ++ A GH
Sbjct: 72 VHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGH 113
>pdb|3K1L|B Chain B, Crystal Structure Of Fancl
pdb|3K1L|A Chain A, Crystal Structure Of Fancl
Length = 381
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 455 PAELC-HWLILSDMYGVFKVREYCLEV-IACNFETFADSREFRAMLLTLPPPS---GDSS 509
P ELC I D+ ++K EYCL+V AC+ F++ +F L L PS D S
Sbjct: 102 PKELCREGNIYYDILALYKSNEYCLQVDEACSMIRFSEFTDFEQHYLELKIPSLLLLDHS 161
Query: 510 FRTTVPSAPGAIINVDQGNL 529
V + G ++ GNL
Sbjct: 162 LPDCV--SLGEMLTKSAGNL 179
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 25/42 (59%)
Query: 37 VFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGH 78
V +A+R G +D L+ ++E G +VN D ++ ++ A GH
Sbjct: 78 VHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGH 119
>pdb|3O6Q|A Chain A, The Structure Of Spoiisa And Spoiisb, A Toxin - Antitoxin
System
pdb|3O6Q|C Chain C, The Structure Of Spoiisa And Spoiisb, A Toxin - Antitoxin
System
Length = 157
Score = 30.0 bits (66), Expect = 3.3, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 318 NIDNGICKLSSSVEAMHISDHVDDLADVCVRVDKK 352
N+ +C S+ + +++H DD ADV R+D+K
Sbjct: 64 NLTASLCHYSTQADKDRLTEHXDDPADVQTRLDRK 98
>pdb|1DC2|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 20
Structures
pdb|1A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 18
Structures
pdb|2A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a,
Restrained Minimized Mean Structure
Length = 156
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%)
Query: 37 VFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARML 85
V +A+R G +D L + +G ++ RD W + + A GH D AR L
Sbjct: 82 VHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYL 130
>pdb|1BI7|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
Length = 156
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%)
Query: 37 VFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARML 85
V +A+R G +D L + +G ++ RD W + + A GH D AR L
Sbjct: 82 VHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYL 130
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 44 GDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARMLL 86
G VD ++ +L +VN +D S AL AC GH + A +LL
Sbjct: 194 GRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLL 236
>pdb|1D9S|A Chain A, Tumor Suppressor P15(Ink4b) Structure By Comparative
Modeling And Nmr Data
Length = 136
Score = 28.9 bits (63), Expect = 8.9, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 37 VFEASRAGDVDRLRYILESGVNVNARDQWDSVALYYACLAGHLDAARML 85
V +A+R G +D L + +G ++ D W + + A GH D AR L
Sbjct: 82 VHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYL 130
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,910,406
Number of Sequences: 62578
Number of extensions: 687699
Number of successful extensions: 1801
Number of sequences better than 100.0: 115
Number of HSP's better than 100.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1519
Number of HSP's gapped (non-prelim): 277
length of query: 583
length of database: 14,973,337
effective HSP length: 104
effective length of query: 479
effective length of database: 8,465,225
effective search space: 4054842775
effective search space used: 4054842775
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)