Query 007950
Match_columns 583
No_of_seqs 461 out of 2812
Neff 6.3
Searched_HMMs 46136
Date Thu Mar 28 17:29:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007950.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007950hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4441 Proteins containing BT 100.0 2E-60 4.3E-65 532.2 25.3 377 127-572 19-436 (571)
2 PHA02713 hypothetical protein; 100.0 3E-55 6.6E-60 490.5 23.7 358 128-572 9-407 (557)
3 PHA02790 Kelch-like protein; P 100.0 8.1E-52 1.8E-56 455.7 25.4 371 138-573 16-456 (480)
4 PHA03098 kelch-like protein; P 100.0 3.6E-50 7.7E-55 447.1 27.5 362 141-572 6-446 (534)
5 KOG4350 Uncharacterized conser 100.0 2.1E-29 4.5E-34 260.0 7.7 213 138-394 38-254 (620)
6 KOG2075 Topoisomerase TOP1-int 99.9 3.9E-22 8.5E-27 211.0 10.5 218 137-393 107-340 (521)
7 PF07707 BACK: BTB And C-termi 99.7 8.2E-18 1.8E-22 146.6 5.5 103 277-388 1-103 (103)
8 KOG4682 Uncharacterized conser 99.7 3.3E-17 7.2E-22 170.3 10.0 176 141-352 66-246 (488)
9 smart00875 BACK BTB And C-term 99.6 2E-15 4.3E-20 130.2 7.8 99 277-385 1-99 (101)
10 PF00651 BTB: BTB/POZ domain; 99.6 2.4E-15 5.2E-20 132.3 5.7 97 142-269 8-109 (111)
11 smart00225 BTB Broad-Complex, 99.5 5.1E-14 1.1E-18 117.1 7.0 88 146-264 1-90 (90)
12 KOG4591 Uncharacterized conser 99.5 8.3E-14 1.8E-18 133.5 7.7 156 140-335 62-223 (280)
13 KOG4441 Proteins containing BT 99.4 2E-13 4.3E-18 153.9 9.8 118 432-574 333-486 (571)
14 PHA02713 hypothetical protein; 99.3 5.1E-12 1.1E-16 142.4 10.9 116 432-572 304-472 (557)
15 PHA02790 Kelch-like protein; P 99.3 8.2E-12 1.8E-16 138.4 10.9 113 432-557 319-454 (480)
16 KOG0783 Uncharacterized conser 99.2 6.2E-12 1.3E-16 140.1 3.7 137 142-313 710-852 (1267)
17 PHA03098 kelch-like protein; P 99.1 1.4E-09 3.1E-14 121.6 16.9 247 271-572 72-398 (534)
18 TIGR03547 muta_rot_YjhT mutatr 98.9 5E-09 1.1E-13 110.9 10.4 108 441-573 168-331 (346)
19 PLN02153 epithiospecifier prot 98.7 6.9E-08 1.5E-12 102.2 10.9 117 432-573 86-261 (341)
20 TIGR03547 muta_rot_YjhT mutatr 98.7 7.4E-08 1.6E-12 101.9 10.7 116 432-572 18-209 (346)
21 PRK14131 N-acetylneuraminic ac 98.6 1.1E-07 2.4E-12 102.2 10.5 107 441-572 189-352 (376)
22 TIGR03548 mutarot_permut cycli 98.6 2.4E-07 5.2E-12 97.3 11.7 95 432-536 73-205 (323)
23 PLN02193 nitrile-specifier pro 98.6 2.2E-07 4.8E-12 103.0 11.8 117 432-573 229-387 (470)
24 TIGR03548 mutarot_permut cycli 98.6 2.2E-07 4.7E-12 97.6 10.7 119 432-574 124-314 (323)
25 PLN02153 epithiospecifier prot 98.6 3.8E-07 8.3E-12 96.6 11.6 107 432-548 33-193 (341)
26 PLN02193 nitrile-specifier pro 98.4 1.4E-06 3E-11 96.6 11.8 106 432-547 176-327 (470)
27 PRK14131 N-acetylneuraminic ac 98.3 2.8E-06 6E-11 91.4 11.2 116 432-572 39-230 (376)
28 KOG0783 Uncharacterized conser 98.0 5.7E-06 1.2E-10 93.6 5.6 99 139-265 553-683 (1267)
29 PF13964 Kelch_6: Kelch motif 97.6 0.00012 2.6E-09 55.7 4.6 47 459-539 1-50 (50)
30 KOG0511 Ankyrin repeat protein 97.5 3.8E-05 8.3E-10 80.7 2.4 139 147-320 295-441 (516)
31 KOG1987 Speckle-type POZ prote 97.4 7.4E-05 1.6E-09 77.6 1.7 126 152-313 110-240 (297)
32 PF01344 Kelch_1: Kelch motif; 97.3 0.00016 3.4E-09 54.0 2.7 44 459-536 1-47 (47)
33 KOG2838 Uncharacterized conser 97.2 0.00021 4.5E-09 72.5 2.7 69 143-239 131-199 (401)
34 KOG4693 Uncharacterized conser 97.0 0.0032 7E-08 64.1 8.7 39 440-482 104-148 (392)
35 KOG2838 Uncharacterized conser 96.9 0.00027 5.9E-09 71.6 0.8 103 153-281 262-397 (401)
36 PF02214 BTB_2: BTB/POZ domain 96.8 0.0026 5.6E-08 54.8 6.1 86 147-263 1-94 (94)
37 KOG0379 Kelch repeat-containin 96.8 0.0067 1.5E-07 67.8 10.5 106 433-548 124-275 (482)
38 PF07646 Kelch_2: Kelch motif; 96.1 0.0085 1.8E-07 45.4 4.2 46 459-536 1-49 (49)
39 KOG0379 Kelch repeat-containin 96.1 0.026 5.7E-07 63.1 9.6 96 443-548 90-224 (482)
40 smart00612 Kelch Kelch domain. 95.9 0.009 1.9E-07 43.6 3.4 26 523-548 18-46 (47)
41 PF11822 DUF3342: Domain of un 95.9 0.0062 1.3E-07 63.8 3.4 85 153-269 15-102 (317)
42 KOG2716 Polymerase delta-inter 95.8 0.017 3.6E-07 58.3 5.7 92 147-269 7-103 (230)
43 smart00612 Kelch Kelch domain. 95.7 0.017 3.7E-07 42.1 4.3 31 440-470 14-47 (47)
44 KOG1230 Protein containing rep 94.9 0.15 3.3E-06 55.0 9.9 112 441-575 154-319 (521)
45 KOG3473 RNA polymerase II tran 94.6 0.043 9.2E-07 47.8 4.0 54 199-255 45-111 (112)
46 KOG1230 Protein containing rep 94.6 0.18 3.9E-06 54.5 9.4 113 441-577 98-256 (521)
47 KOG4693 Uncharacterized conser 94.5 0.12 2.7E-06 52.9 7.6 88 452-548 3-139 (392)
48 KOG1665 AFH1-interacting prote 93.4 0.13 2.8E-06 51.4 5.2 64 199-265 39-105 (302)
49 PF13418 Kelch_4: Galactose ox 93.0 0.074 1.6E-06 39.9 2.3 44 459-537 1-49 (49)
50 smart00512 Skp1 Found in Skp1 91.8 0.25 5.4E-06 43.5 4.6 72 153-256 13-104 (104)
51 KOG4152 Host cell transcriptio 91.5 0.4 8.7E-06 53.1 6.5 122 432-575 92-276 (830)
52 PF13964 Kelch_6: Kelch motif 89.6 0.44 9.5E-06 35.9 3.5 29 432-460 12-50 (50)
53 PF13854 Kelch_5: Kelch motif 88.3 0.46 9.9E-06 34.8 2.7 24 456-483 1-24 (42)
54 KOG2714 SETA binding protein S 88.1 0.8 1.7E-05 49.9 5.5 91 147-268 13-112 (465)
55 KOG4152 Host cell transcriptio 87.6 0.98 2.1E-05 50.2 5.8 72 432-507 43-148 (830)
56 smart00202 SR Scavenger recept 87.5 0.1 2.3E-06 45.4 -1.3 60 22-95 23-82 (101)
57 PF13415 Kelch_3: Galactose ox 86.6 1.2 2.5E-05 33.5 4.2 27 441-467 19-48 (49)
58 KOG1724 SCF ubiquitin ligase, 86.2 0.56 1.2E-05 45.1 2.7 69 210-281 44-139 (162)
59 PF01344 Kelch_1: Kelch motif; 83.0 2 4.2E-05 31.6 3.9 25 432-456 12-43 (47)
60 PF13415 Kelch_3: Galactose ox 81.6 1.7 3.6E-05 32.7 3.1 24 523-546 22-48 (49)
61 PF00530 SRCR: Scavenger recep 81.3 0.085 1.9E-06 45.2 -4.7 61 23-97 22-82 (99)
62 PF01466 Skp1: Skp1 family, di 78.6 0.65 1.4E-05 38.9 -0.0 46 239-285 12-59 (78)
63 cd03774 MATH_SPOP Speckle-type 77.4 0.86 1.9E-05 41.9 0.4 36 63-98 102-137 (139)
64 cd03779 MATH_TRAF1 Tumor Necro 76.9 1 2.2E-05 42.6 0.7 32 64-95 115-146 (147)
65 COG3055 Uncharacterized protei 75.7 4.1 8.9E-05 43.7 4.9 39 441-482 113-155 (381)
66 PF11822 DUF3342: Domain of un 75.5 2.5 5.4E-05 44.7 3.2 65 259-329 61-125 (317)
67 PLN02772 guanylate kinase 75.5 4.6 0.0001 44.2 5.4 48 432-482 35-95 (398)
68 cd03781 MATH_TRAF4 Tumor Necro 74.5 1.3 2.8E-05 41.8 0.8 30 64-95 124-153 (154)
69 COG3055 Uncharacterized protei 70.8 8.3 0.00018 41.4 5.8 83 449-574 68-157 (381)
70 KOG1778 CREB binding protein/P 70.8 2.2 4.9E-05 45.3 1.6 131 153-319 37-168 (319)
71 cd03776 MATH_TRAF6 Tumor Necro 69.2 1.8 3.8E-05 40.4 0.4 30 64-95 117-146 (147)
72 PF03931 Skp1_POZ: Skp1 family 65.6 19 0.0004 28.7 5.6 48 153-233 12-59 (62)
73 KOG0511 Ankyrin repeat protein 64.8 2.3 5E-05 45.7 0.3 84 144-260 149-235 (516)
74 COG5201 SKP1 SCF ubiquitin lig 59.4 7.4 0.00016 36.0 2.5 58 212-269 39-120 (158)
75 KOG3840 Uncharaterized conserv 52.0 16 0.00036 38.4 3.8 58 199-257 125-185 (438)
76 cd03773 MATH_TRIM37 Tripartite 51.9 7.2 0.00016 35.2 1.2 31 64-96 98-130 (132)
77 PLN02772 guanylate kinase 51.6 30 0.00064 38.1 5.9 75 459-568 24-104 (398)
78 cd03772 MATH_HAUSP Herpesvirus 48.6 7.3 0.00016 35.7 0.7 34 63-96 98-131 (137)
79 cd00270 MATH_TRAF_C Tumor Necr 46.2 7 0.00015 36.1 0.1 31 63-95 118-148 (149)
80 cd03780 MATH_TRAF5 Tumor Necro 44.3 9.6 0.00021 36.0 0.7 32 64-95 116-147 (148)
81 KOG2715 Uncharacterized conser 36.2 33 0.00071 33.3 2.9 51 218-269 70-120 (210)
82 PF07707 BACK: BTB And C-termi 35.7 29 0.00063 29.4 2.4 25 245-269 2-26 (103)
83 cd03777 MATH_TRAF3 Tumor Necro 34.3 22 0.00047 34.9 1.5 30 64-95 154-183 (186)
84 PF03089 RAG2: Recombination a 33.4 92 0.002 32.9 5.8 13 560-572 161-173 (337)
85 KOG2723 Uncharacterized conser 22.9 1.4E+02 0.003 30.4 4.9 67 199-268 38-107 (221)
86 cd03775 MATH_Ubp21p Ubiquitin- 22.5 42 0.00092 30.5 1.1 32 63-94 97-132 (134)
87 PF00651 BTB: BTB/POZ domain; 21.6 82 0.0018 26.8 2.7 30 274-307 81-110 (111)
88 KOG2075 Topoisomerase TOP1-int 21.0 72 0.0016 35.8 2.6 45 271-323 184-228 (521)
No 1
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=2e-60 Score=532.16 Aligned_cols=377 Identities=21% Similarity=0.310 Sum_probs=344.3
Q ss_pred cccchhhccCCCCCCCCCccEEEEEe--eEEcchhhhcccCcccccccCCccccccchhhhHHHHHHHHHHHHHHhhcCC
Q 007950 127 KQCGEEATGNIDPAWSMDLSTVLRVK--TVHISSPILAAKSPFFYKVNVPSLVYAFCIPWFLLLWLVILCIFLQLFSNGM 204 (583)
Q Consensus 127 ~~~~l~~~l~~~~~~~~~~Dv~l~v~--~~~aHr~iLaa~S~yF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 204 (583)
+...+.+.++.++..+.+|||++.++ +|+|||.||||+||||++ ||+++|
T Consensus 19 h~~~~l~~l~~lr~~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFra----------------------------MFt~~l 70 (571)
T KOG4441|consen 19 HSKFLLQGLNELREEGLLCDVTLLVGDREFPAHRVVLAACSPYFRA----------------------------MFTSGL 70 (571)
T ss_pred HHHHHHHHHHHHHHhCCCceEEEEECCeeechHHHHHHhccHHHHH----------------------------HhcCCc
Confidence 34455667788899999999999995 799999999999999999 999999
Q ss_pred CCCCcceEEEecCCCCHHHHHHHHhhhccCccccCCcchHHHHHHHhchhhhcchhhhhhhccccCCCCchhhhhhcccc
Q 007950 205 RESEQRYVTLRIHASEEAALMELLNFMYSSTLSTTTPTALLDVLMAADKFEVASCMRYCSRLLRNLPMTCESALLYLDLP 284 (583)
Q Consensus 205 ~es~~~~v~l~~~~~~~~~f~~lL~fiYtg~l~i~~~~~v~~lL~aAd~~~v~~l~~~C~~~L~~~~l~~~n~~~~l~~a 284 (583)
+|+.+.+|+|. ++++.++..+|+|+|||++.++. +|+++||.||++||++.+++.|++||.. +++++||+.+..+|
T Consensus 71 ~e~~~~~i~l~--~v~~~~l~~ll~y~Yt~~i~i~~-~nVq~ll~aA~~lQi~~v~~~C~~fL~~-~l~~~Nclgi~~~a 146 (571)
T KOG4441|consen 71 KESKQKEINLE--GVDPETLELLLDYAYTGKLEISE-DNVQELLEAASLLQIPEVVDACCEFLES-QLDPSNCLGIRRFA 146 (571)
T ss_pred ccccceEEEEe--cCCHHHHHHHHHHhhcceEEech-HhHHHHHHHHHHhhhHHHHHHHHHHHHh-cCCHHHHHHHHHHH
Confidence 99999999998 89999999999999999999999 9999999999999999999999999999 99999999999999
Q ss_pred hhhhhhhccHHHHHHHHHHHHHhcccccccchhhhCCCHHHHHHHhcCCCccccchhHHHHHHHHHHhhcCCChhhHHhh
Q 007950 285 SSVLMADAVQPLTDTAKQFLAARYKDISKFQEEVLNLPLAGIEAVLASDDLQIASEDAVYDFALKWARTHYPKLEERREI 364 (583)
Q Consensus 285 ~~~~~~~~~~~L~~~~~~fi~~~f~~v~~~~~~f~~L~~~~l~~lL~sd~L~v~sE~~vf~avl~Wi~~~~~~~~~R~~~ 364 (583)
+.| .|.+|.+.+..|+..||.++.+ ++||+.||.+.+..+|++|+|+|.+|++||+++++|++|| .+.|+.+
T Consensus 147 ~~~----~~~~L~~~a~~~i~~~F~~v~~-~eefl~L~~~~l~~ll~~d~l~v~~E~~vf~a~~~Wv~~d---~~~R~~~ 218 (571)
T KOG4441|consen 147 ELH----SCTELLEVADEYILQHFAEVSK-TEEFLLLSLEELIGLLSSDDLNVDSEEEVFEAAMRWVKHD---FEEREEH 218 (571)
T ss_pred Hhc----CcHHHHHHHHHHHHHHHHHHhc-cHHhhCCCHHHHHhhccccCCCcCCHHHHHHHHHHHHhcC---HhhHHHH
Confidence 998 8999999999999999999999 9999999999999999999999999999999999999999 7789999
Q ss_pred hccccccccccCCCCHHHHHhhccCCCCC--chHHHHHHHHHHhhhccchhhhhhhhccccccccc-cceeeeeEeec--
Q 007950 365 LGSRLGRLIRFPYMTCRKLKKVLTCNDFD--PELASKVVLESLFFKAETPYRQRALAAEEANSTYR-RFVERAYKYRP-- 439 (583)
Q Consensus 365 l~~~Ll~~IRfplm~~~~L~~~v~~~~l~--~~~~~~~l~ea~~~~~~~p~~q~~l~s~~t~~~pR-~~~~~lyv~~p-- 439 (583)
+ +.|+++||||+|++.+|.+.+...++. ++.|++++.+|++||. .|.+++.++++++++ | ...+.+++.|+
T Consensus 219 ~-~~ll~~vr~~ll~~~~l~~~v~~~~~~~~~~~c~~~l~ea~~~~~-~~~~~~~~~~~~t~~--r~~~~~~l~~vGG~~ 294 (571)
T KOG4441|consen 219 L-PALLEAVRLPLLPPQFLVEIVESEPLIKRDSACRDLLDEAKKYHL-LPQRRPVMQSPRTRP--RRSVSGKLVAVGGYN 294 (571)
T ss_pred H-HHHHHhcCccCCCHHHHHHHHhhhhhhccCHHHHHHHHHHHHHhh-CcccCccccCCCccc--CcCCCCeEEEECCCC
Confidence 9 899999999999999999999888775 6899999999999999 788888888888875 7 45577887554
Q ss_pred -----ceeEEEecCCCCeEEe---ecccccceeEEeeCCeeeceeEEecccc---------cccCccCC-------CCCC
Q 007950 440 -----VKVVEFELPRQQCVVY---LDLKREECAHLFPAGRIYSQAFHLGGQG---------FFLSAHCN-------MDQQ 495 (583)
Q Consensus 440 -----~ksVe~ydp~~~~W~~---L~~~R~~~~vavl~gklYn~lYviGG~g---------~~~dp~~n-------M~~~ 495 (583)
..++++|||.++.|.. |+.+|..+++++++|+|| ++||+. ++|||++| |+++
T Consensus 295 ~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lY----v~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~ 370 (571)
T KOG4441|consen 295 RQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLY----VVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTK 370 (571)
T ss_pred CCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEE----EEccccCCCcccceEEEecCCCCceeccCCccCc
Confidence 3589999999999998 889999999999996655 999982 35799987 9999
Q ss_pred CCceEEEEEccc-------cCCCCccccccccceeeecC---CceeecCCCCcceecceeeecccccccccccceecCCc
Q 007950 496 SSFHCFGLFLGM-------QEKGSVSFAVDYEFAARIKP---TEEYVSKYKGNYTFTGGKAVGYRNLFGIPWTAFMADDS 565 (583)
Q Consensus 496 R~~~~~~vl~G~-------~~~~~lssvVd~~~aErYdP---~W~~vapm~~~~~~~g~~avg~~~~~~~~~~~~~~~~~ 565 (583)
|+.|++++++|+ ++...+.++ |+||| +|+.++||+.++..+|+++++ ..
T Consensus 371 R~~~~v~~l~g~iYavGG~dg~~~l~sv------E~YDp~~~~W~~va~m~~~r~~~gv~~~~---------------g~ 429 (571)
T KOG4441|consen 371 RSDFGVAVLDGKLYAVGGFDGEKSLNSV------ECYDPVTNKWTPVAPMLTRRSGHGVAVLG---------------GK 429 (571)
T ss_pred cccceeEEECCEEEEEeccccccccccE------EEecCCCCcccccCCCCcceeeeEEEEEC---------------CE
Confidence 999999988666 677788886 99999 999999999998888888777 56
Q ss_pred eEEECCe
Q 007950 566 IYFINGN 572 (583)
Q Consensus 566 ~~~i~~~ 572 (583)
+|.|||-
T Consensus 430 iYi~GG~ 436 (571)
T KOG4441|consen 430 LYIIGGG 436 (571)
T ss_pred EEEEcCc
Confidence 7777774
No 2
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=3e-55 Score=490.50 Aligned_cols=358 Identities=12% Similarity=0.117 Sum_probs=302.7
Q ss_pred ccchhhccCCCCCCCCCccEEEEEe---eEEcchhhhcccCcccccccCCccccccchhhhHHHHHHHHHHHHHHhhcCC
Q 007950 128 QCGEEATGNIDPAWSMDLSTVLRVK---TVHISSPILAAKSPFFYKVNVPSLVYAFCIPWFLLLWLVILCIFLQLFSNGM 204 (583)
Q Consensus 128 ~~~l~~~l~~~~~~~~~~Dv~l~v~---~~~aHr~iLaa~S~yF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 204 (583)
...+...++.+++.+.+|||+|.|+ +|+|||+||||+|+||++ ||+++|
T Consensus 9 ~~~~l~~l~~lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~a----------------------------mF~~~~ 60 (557)
T PHA02713 9 NRRVVSNISNLLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRT----------------------------LFTTPM 60 (557)
T ss_pred hHHHHHHHHHHHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHH----------------------------HhcCCc
Confidence 3455667778888899999999984 699999999999999999 999999
Q ss_pred CCCC-cceEEEecCCCCHHHHHHHHhhhccCccccCCcchHHHHHHHhchhhhcchhhhhhhccccCCCCchhhhhhccc
Q 007950 205 RESE-QRYVTLRIHASEEAALMELLNFMYSSTLSTTTPTALLDVLMAADKFEVASCMRYCSRLLRNLPMTCESALLYLDL 283 (583)
Q Consensus 205 ~es~-~~~v~l~~~~~~~~~f~~lL~fiYtg~l~i~~~~~v~~lL~aAd~~~v~~l~~~C~~~L~~~~l~~~n~~~~l~~ 283 (583)
+|+. +++|+|+ ++++++|+.+|+|+|||+ ++. +++++||.||++||++.+++.|++||.+ .++++||+.++.+
T Consensus 61 ~e~~~~~~v~l~--~v~~~~~~~ll~y~Yt~~--i~~-~nv~~ll~aA~~lqi~~l~~~C~~~l~~-~l~~~NCl~i~~~ 134 (557)
T PHA02713 61 IIRDLVTRVNLQ--MFDKDAVKNIVQYLYNRH--ISS-MNVIDVLKCADYLLIDDLVTDCESYIKD-YTNHDTCIYMYHR 134 (557)
T ss_pred hhhccCceEEec--cCCHHHHHHHHHHhcCCC--CCH-HHHHHHHHHHHHHCHHHHHHHHHHHHHh-hCCccchHHHHHH
Confidence 9875 7889998 999999999999999998 566 8999999999999999999999999999 8999999999987
Q ss_pred chhhhhhhccHHHHHHHHHHHHHhcccccccchhhhCCCHHHHHHHhcCCC-ccccchhHHHHHHHHHHhhcCCChhhHH
Q 007950 284 PSSVLMADAVQPLTDTAKQFLAARYKDISKFQEEVLNLPLAGIEAVLASDD-LQIASEDAVYDFALKWARTHYPKLEERR 362 (583)
Q Consensus 284 a~~~~~~~~~~~L~~~~~~fi~~~f~~v~~~~~~f~~L~~~~l~~lL~sd~-L~v~sE~~vf~avl~Wi~~~~~~~~~R~ 362 (583)
+..+ .+..|.+.|.+||.+||.++++ +++|+.|+.+.|.++|++|+ |+|.+|++||+|+++|++|| .++|+
T Consensus 135 ~~~~----~~~~L~~~a~~~i~~~f~~v~~-~~ef~~L~~~~l~~lL~~d~~l~v~~Ee~v~eav~~W~~~d---~~~r~ 206 (557)
T PHA02713 135 LYEM----SHIPIVKYIKRMLMSNIPTLIT-TDAFKKTVFEILFDIISTNDNVYLYREGYKVTILLKWLEYN---YITEE 206 (557)
T ss_pred HHhc----cchHHHHHHHHHHHHHHHHHhC-ChhhhhCCHHHHHHHhccccccCCCcHHHHHHHHHHHHhcC---HHHHH
Confidence 7766 5678999999999999999999 99999999999999999988 79999999999999999998 55555
Q ss_pred hhhccccccccccCCCCHHHHHhhccCCCCC--chHHHHHHHHHHhhhccchhhhhhhhccccccccccceeeeeEeec-
Q 007950 363 EILGSRLGRLIRFPYMTCRKLKKVLTCNDFD--PELASKVVLESLFFKAETPYRQRALAAEEANSTYRRFVERAYKYRP- 439 (583)
Q Consensus 363 ~~l~~~Ll~~IRfplm~~~~L~~~v~~~~l~--~~~~~~~l~ea~~~~~~~p~~q~~l~s~~t~~~pR~~~~~lyv~~p- 439 (583)
+ + .+||++||||+|++.++. .+..+++. .+.|.+++.+|++++. +. ||. ..+++.++
T Consensus 207 ~-~-~~ll~~VR~~~l~~~~~~-~~~~~~~i~~~~~c~~~l~~a~~~~~-------------~~--~r~--~~l~~~~g~ 266 (557)
T PHA02713 207 Q-L-LCILSCIDIQNLDKKSRL-LLYSNKTINMYPSCIQFLLDNKQNRN-------------II--PRQ--LCLVCHDTK 266 (557)
T ss_pred H-H-hhhHhhhhHhhcchhhhh-hhcchHHHHhhHHHHHHHhhhhhhcc-------------cC--Ccc--eEEEEecCc
Confidence 4 5 599999999999999987 44444543 6789999988875432 11 243 23444322
Q ss_pred ----ceeEEEecCCCCeEEe---ecccccceeEEeeCCeeeceeEEecccc---------cccCccCC-------CCCCC
Q 007950 440 ----VKVVEFELPRQQCVVY---LDLKREECAHLFPAGRIYSQAFHLGGQG---------FFLSAHCN-------MDQQS 496 (583)
Q Consensus 440 ----~ksVe~ydp~~~~W~~---L~~~R~~~~vavl~gklYn~lYviGG~g---------~~~dp~~n-------M~~~R 496 (583)
...+++|||.+++|.. ||.+|..+++++++|+|| ++||.. ++|||..| |+.+|
T Consensus 267 ~~~~~~~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IY----viGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R 342 (557)
T PHA02713 267 YNVCNPCILVYNINTMEYSVISTIPNHIINYASAIVDNEII----IAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNR 342 (557)
T ss_pred cccCCCCEEEEeCCCCeEEECCCCCccccceEEEEECCEEE----EEcCCCCCCCccceEEEEECCCCeEeeCCCCcchh
Confidence 2467899999999997 888899999999996665 999961 25788877 99999
Q ss_pred CceEEEEEccc-------cCCCCccccccccceeeecC---CceeecCCCCcceecceeeecccccccccccceecCCce
Q 007950 497 SFHCFGLFLGM-------QEKGSVSFAVDYEFAARIKP---TEEYVSKYKGNYTFTGGKAVGYRNLFGIPWTAFMADDSI 566 (583)
Q Consensus 497 ~~~~~~vl~G~-------~~~~~lssvVd~~~aErYdP---~W~~vapm~~~~~~~g~~avg~~~~~~~~~~~~~~~~~~ 566 (583)
+.|++++++|+ ++...++++ |+||| +|+.++|||.++..+++++++ ++|
T Consensus 343 ~~~~~~~~~g~IYviGG~~~~~~~~sv------e~Ydp~~~~W~~~~~mp~~r~~~~~~~~~---------------g~I 401 (557)
T PHA02713 343 CRFSLAVIDDTIYAIGGQNGTNVERTI------ECYTMGDDKWKMLPDMPIALSSYGMCVLD---------------QYI 401 (557)
T ss_pred hceeEEEECCEEEEECCcCCCCCCceE------EEEECCCCeEEECCCCCcccccccEEEEC---------------CEE
Confidence 99999988777 333335554 99999 899999999999888877666 678
Q ss_pred EEECCe
Q 007950 567 YFINGN 572 (583)
Q Consensus 567 ~~i~~~ 572 (583)
|.|||.
T Consensus 402 YviGG~ 407 (557)
T PHA02713 402 YIIGGR 407 (557)
T ss_pred EEEeCC
Confidence 888885
No 3
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=8.1e-52 Score=455.69 Aligned_cols=371 Identities=15% Similarity=0.156 Sum_probs=290.0
Q ss_pred CCCCCCCccEEEEEe-eEEcchhhhcccCcccccccCCccccccchhhhHHHHHHHHHHHHHHhhcCCCCCCcceEEEec
Q 007950 138 DPAWSMDLSTVLRVK-TVHISSPILAAKSPFFYKVNVPSLVYAFCIPWFLLLWLVILCIFLQLFSNGMRESEQRYVTLRI 216 (583)
Q Consensus 138 ~~~~~~~~Dv~l~v~-~~~aHr~iLaa~S~yF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~es~~~~v~l~~ 216 (583)
++..+.+|||++.++ +|+|||+||||+||||++ ||+++|+|+.+ +|++..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~HR~VLAa~S~YFra----------------------------MF~~~~~Es~~-~v~~~~ 66 (480)
T PHA02790 16 LSMTKKFKTIIEAIGGNIIVNSTILKKLSPYFRT----------------------------HLRQKYTKNKD-PVTRVC 66 (480)
T ss_pred HHhhhhhceEEEEcCcEEeeehhhhhhcCHHHHH----------------------------HhcCCcccccc-ceEEEe
Confidence 455678999999995 799999999999999999 99999999954 566532
Q ss_pred CCCCHHHHHHHHhhhccCccccCCcchHHHHHHHhchhhhcchhhhhhhccccCCCCchhhhhhcccchhhhhhhccHHH
Q 007950 217 HASEEAALMELLNFMYSSTLSTTTPTALLDVLMAADKFEVASCMRYCSRLLRNLPMTCESALLYLDLPSSVLMADAVQPL 296 (583)
Q Consensus 217 ~~~~~~~f~~lL~fiYtg~l~i~~~~~v~~lL~aAd~~~v~~l~~~C~~~L~~~~l~~~n~~~~l~~a~~~~~~~~~~~L 296 (583)
.++++++|+.+|+|+|||++.++. +||++||.||++||++.+++.|++||.+ +|+++||+.++.+|+.| +|.+|
T Consensus 67 ~~v~~~~l~~lldy~YTg~l~it~-~nV~~ll~aA~~Lqi~~v~~~C~~fL~~-~l~~~NCl~i~~~A~~y----~~~~L 140 (480)
T PHA02790 67 LDLDIHSLTSIVIYSYTGKVYIDS-HNVVNLLRASILTSVEFIIYTCINFILR-DFRKEYCVECYMMGIEY----GLSNL 140 (480)
T ss_pred cCcCHHHHHHHHHhheeeeEEEec-ccHHHHHHHHHHhChHHHHHHHHHHHHh-hCCcchHHHHHHHHHHh----CHHHH
Confidence 389999999999999999999999 9999999999999999999999999999 99999999999999999 89999
Q ss_pred HHHHHHHHHHhcccccccc--hhhhCCCHHHHHHHhcCCCccccchhHHHHHHHHHHhhcCCChhhHHhhhccccccc-c
Q 007950 297 TDTAKQFLAARYKDISKFQ--EEVLNLPLAGIEAVLASDDLQIASEDAVYDFALKWARTHYPKLEERREILGSRLGRL-I 373 (583)
Q Consensus 297 ~~~~~~fi~~~f~~v~~~~--~~f~~L~~~~l~~lL~sd~L~v~sE~~vf~avl~Wi~~~~~~~~~R~~~l~~~Ll~~-I 373 (583)
.++|.+||.+||.++++ + ++|+.||. .+||++|+|+|.+|++||+++++|++|+ ..|...+ .+++++ |
T Consensus 141 ~~~a~~fi~~nF~~v~~-~~~~ef~~L~~---~~lLssd~L~v~~Ee~V~eav~~Wl~~~----~~~~~~l-~~~vr~~i 211 (480)
T PHA02790 141 LCHTKDFIAKHFLELED-DIIDNFDYLSM---KLILESDELNVPDEDYVVDFVIKWYMKR----RNRLGNL-LLLIKNVI 211 (480)
T ss_pred HHHHHHHHHHhHHHHhc-ccchhhhhCCH---HHhcccccCCCccHHHHHHHHHHHHHhh----HHHHHHH-HHHHHhcC
Confidence 99999999999999998 6 89999996 6899999999999999999999999986 3455555 466666 8
Q ss_pred ccCCCCHHHHHhhccCCCCCchHHHHHHHHHHhhhcc-chhhh---hhhhc-cccc-ccc--c-c----ceeeeeEeec-
Q 007950 374 RFPYMTCRKLKKVLTCNDFDPELASKVVLESLFFKAE-TPYRQ---RALAA-EEAN-STY--R-R----FVERAYKYRP- 439 (583)
Q Consensus 374 Rfplm~~~~L~~~v~~~~l~~~~~~~~l~ea~~~~~~-~p~~q---~~l~s-~~t~-~~p--R-~----~~~~lyv~~p- 439 (583)
|+++|++..+..+ ..++.++..++.. .|... +.... ..+. -.+ . . ..+.+|+.|+
T Consensus 212 r~~~l~~~~l~~~-----------~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lyviGG~ 280 (480)
T PHA02790 212 RSNYLSPRGINNV-----------KWILDCTKIFHCDKQPRKSYKYPFIEYPMNMDQIIDIFHMCTSTHVGEVVYLIGGW 280 (480)
T ss_pred ChhhCCHHHHHHH-----------HHHHHHHHHhhccccccccccccccccCCcccceeeccCCcceEEECCEEEEEcCC
Confidence 9999998887542 2344455544431 01000 00000 0000 000 0 0 1145677554
Q ss_pred -----ceeEEEecCCCCeEEe---ecccccceeEEeeCCeeeceeEEeccc-c----cccCccCC-------CCCCCCce
Q 007950 440 -----VKVVEFELPRQQCVVY---LDLKREECAHLFPAGRIYSQAFHLGGQ-G----FFLSAHCN-------MDQQSSFH 499 (583)
Q Consensus 440 -----~ksVe~ydp~~~~W~~---L~~~R~~~~vavl~gklYn~lYviGG~-g----~~~dp~~n-------M~~~R~~~ 499 (583)
.+++++|||.+++|.. |+.+|..+++++++|+|| ++||. + .+|||..| |+++|..|
T Consensus 281 ~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iY----viGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~ 356 (480)
T PHA02790 281 MNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLY----VVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNP 356 (480)
T ss_pred CCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEE----EECCcCCCCceEEEECCCCeEEECCCCCCCCccc
Confidence 3578999999999998 888899999999997766 99997 2 35788776 99999999
Q ss_pred EEEEEccc----cCC-CCccccccccceeeecC---CceeecCCCCcceecceeeecc-----------cccccccccce
Q 007950 500 CFGLFLGM----QEK-GSVSFAVDYEFAARIKP---TEEYVSKYKGNYTFTGGKAVGY-----------RNLFGIPWTAF 560 (583)
Q Consensus 500 ~~~vl~G~----~~~-~~lssvVd~~~aErYdP---~W~~vapm~~~~~~~g~~avg~-----------~~~~~~~~~~~ 560 (583)
++++++|+ .|. +...+ | |+||| +|+.++||+.++..++.+++|+ .+.-+-.|+..
T Consensus 357 ~~~~~~g~IYviGG~~~~~~~-v-----e~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG~~e~ydp~~~~W~~~ 430 (480)
T PHA02790 357 AVASINNVIYVIGGHSETDTT-T-----EYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGRNAEFYCESSNTWTLI 430 (480)
T ss_pred EEEEECCEEEEecCcCCCCcc-E-----EEEeCCCCEEEeCCCCCCccccceEEEECCEEEEECCceEEecCCCCcEeEc
Confidence 99988887 222 12234 3 99999 8999999999988776554442 23345567532
Q ss_pred -------------ecCCceEEECCee
Q 007950 561 -------------MADDSIYFINGNL 573 (583)
Q Consensus 561 -------------~~~~~~~~i~~~~ 573 (583)
.-+++||.+||.-
T Consensus 431 ~~m~~~r~~~~~~v~~~~IYviGG~~ 456 (480)
T PHA02790 431 DDPIYPRDNPELIIVDNKLLLIGGFY 456 (480)
T ss_pred CCCCCCccccEEEEECCEEEEECCcC
Confidence 2356788888863
No 4
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=3.6e-50 Score=447.12 Aligned_cols=362 Identities=14% Similarity=0.166 Sum_probs=296.2
Q ss_pred CCCCccEEEEE----eeEEcchhhhcccCcccccccCCccccccchhhhHHHHHHHHHHHHHHhhcCCCCCCcceEEEec
Q 007950 141 WSMDLSTVLRV----KTVHISSPILAAKSPFFYKVNVPSLVYAFCIPWFLLLWLVILCIFLQLFSNGMRESEQRYVTLRI 216 (583)
Q Consensus 141 ~~~~~Dv~l~v----~~~~aHr~iLaa~S~yF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~es~~~~v~l~~ 216 (583)
.+.+|||+|.+ ++|+|||.||||+|+||++ ||+++|+ +.+|+|+
T Consensus 6 ~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~----------------------------mf~~~~~---~~~i~l~- 53 (534)
T PHA03098 6 LQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKK----------------------------MFKNNFK---ENEINLN- 53 (534)
T ss_pred cCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHH----------------------------HHhCCCC---CceEEec-
Confidence 45799999998 3799999999999999999 9999998 5778887
Q ss_pred CCCCHHHHHHHHhhhccCccccCCcchHHHHHHHhchhhhcchhhhhhhccccCCCCchhhhhhcccchhhhhhhccHHH
Q 007950 217 HASEEAALMELLNFMYSSTLSTTTPTALLDVLMAADKFEVASCMRYCSRLLRNLPMTCESALLYLDLPSSVLMADAVQPL 296 (583)
Q Consensus 217 ~~~~~~~f~~lL~fiYtg~l~i~~~~~v~~lL~aAd~~~v~~l~~~C~~~L~~~~l~~~n~~~~l~~a~~~~~~~~~~~L 296 (583)
+ ++++|+.+|+|+|||++.++. +++++||.+|++||++.|++.|+++|.+ .++.+||+.++.+|+.| ++..|
T Consensus 54 -~-~~~~~~~~l~y~Ytg~~~i~~-~~~~~ll~~A~~l~~~~l~~~C~~~l~~-~l~~~nc~~~~~~a~~~----~~~~L 125 (534)
T PHA03098 54 -I-DYDSFNEVIKYIYTGKINITS-NNVKDILSIANYLIIDFLINLCINYIIK-IIDDNNCIDIYRFSFFY----GCKKL 125 (534)
T ss_pred -C-CHHHHHHHHHHhcCCceEEcH-HHHHHHHHHHHHhCcHHHHHHHHHHHHH-hCCHhHHHHHHHHHHHc----CcHHH
Confidence 7 999999999999999999998 9999999999999999999999999999 89999999999999998 89999
Q ss_pred HHHHHHHHHHhcccccccchhhhCCCHHHHHHHhcCCCccccchhHHHHHHHHHHhhcCCChhhHHhhhccccccccccC
Q 007950 297 TDTAKQFLAARYKDISKFQEEVLNLPLAGIEAVLASDDLQIASEDAVYDFALKWARTHYPKLEERREILGSRLGRLIRFP 376 (583)
Q Consensus 297 ~~~~~~fi~~~f~~v~~~~~~f~~L~~~~l~~lL~sd~L~v~sE~~vf~avl~Wi~~~~~~~~~R~~~l~~~Ll~~IRfp 376 (583)
++.|.+||.+||.++.+ +++|++|+.+.|..+|++|+|+|.+|++||+++++|++++ .++|.+++ ++|+++||||
T Consensus 126 ~~~~~~~i~~nf~~v~~-~~~f~~l~~~~l~~ll~~~~L~v~~E~~v~~av~~W~~~~---~~~r~~~~-~~ll~~vR~~ 200 (534)
T PHA03098 126 YSAAYNYIRNNIELIYN-DPDFIYLSKNELIKILSDDKLNVSSEDVVLEIIIKWLTSK---KNNKYKDI-CLILKVLRIT 200 (534)
T ss_pred HHHHHHHHHHHHHHHhc-CchhhcCCHHHHHHHhcCCCcCcCCHHHHHHHHHHHHhcC---hhhhHhHH-HHHHhhcccc
Confidence 99999999999999999 9999999999999999999999999999999999999999 77888988 8999999999
Q ss_pred CCCHHHHHhhcc------CCCCC-chHHHHHHHHHHhhhcc-chhhhh---hh----------------h--ccc---cc
Q 007950 377 YMTCRKLKKVLT------CNDFD-PELASKVVLESLFFKAE-TPYRQR---AL----------------A--AEE---AN 424 (583)
Q Consensus 377 lm~~~~L~~~v~------~~~l~-~~~~~~~l~ea~~~~~~-~p~~q~---~l----------------~--s~~---t~ 424 (583)
+|++++|.+++. .+.+. ++.|..++.++..++.. .|.... .+ . +.+ ..
T Consensus 201 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 280 (534)
T PHA03098 201 FLSEEGIKKLKRWKLRIKKKKIVFNKRCIKIIYSKKYNLNKILPRSSTFGSIIYIHITMSIFTYNYITNYSPLSEINTII 280 (534)
T ss_pred ccCHHHHHHHHHHHhhcCCcceeccccchHHHHHHHhcccCCCcCccCCCcceEeecccchhhceeeecchhhhhccccc
Confidence 999999998774 44443 56788888888765420 010000 00 0 000 00
Q ss_pred ccc-ccc-e-----eeeeEeecc-------eeEEEecCCCCeEEe---ecccccceeEEeeCCeeeceeEEecccc----
Q 007950 425 STY-RRF-V-----ERAYKYRPV-------KVVEFELPRQQCVVY---LDLKREECAHLFPAGRIYSQAFHLGGQG---- 483 (583)
Q Consensus 425 ~~p-R~~-~-----~~lyv~~p~-------ksVe~ydp~~~~W~~---L~~~R~~~~vavl~gklYn~lYviGG~g---- 483 (583)
..| +.. . +.+|+.|+. +.+.+||+.+++|.. |+.+|..|++++++|+|| ++||.+
T Consensus 281 ~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~ly----v~GG~~~~~~ 356 (534)
T PHA03098 281 DIHYVYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIY----VIGGIYNSIS 356 (534)
T ss_pred CccccccceEEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEE----EEeCCCCCEe
Confidence 011 111 1 356775542 468899999999988 777899999999997766 999972
Q ss_pred ----cccCccCC-------CCCCCCceEEEEEccc-------cCC-CCccccccccceeeecC---CceeecCCCCccee
Q 007950 484 ----FFLSAHCN-------MDQQSSFHCFGLFLGM-------QEK-GSVSFAVDYEFAARIKP---TEEYVSKYKGNYTF 541 (583)
Q Consensus 484 ----~~~dp~~n-------M~~~R~~~~~~vl~G~-------~~~-~~lssvVd~~~aErYdP---~W~~vapm~~~~~~ 541 (583)
..|||.++ |+.+|..|++++++|+ ... ..+.++ |+||| +|+.+++||.++..
T Consensus 357 ~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v------~~yd~~t~~W~~~~~~p~~r~~ 430 (534)
T PHA03098 357 LNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTV------ECFSLNTNKWSKGSPLPISHYG 430 (534)
T ss_pred cceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceE------EEEeCCCCeeeecCCCCccccC
Confidence 24688775 9999999999887666 222 223453 99999 89999999988876
Q ss_pred cceeeecccccccccccceecCCceEEECCe
Q 007950 542 TGGKAVGYRNLFGIPWTAFMADDSIYFINGN 572 (583)
Q Consensus 542 ~g~~avg~~~~~~~~~~~~~~~~~~~~i~~~ 572 (583)
++..+++ +.+|.+||.
T Consensus 431 ~~~~~~~---------------~~iyv~GG~ 446 (534)
T PHA03098 431 GCAIYHD---------------GKIYVIGGI 446 (534)
T ss_pred ceEEEEC---------------CEEEEECCc
Confidence 6544444 567777775
No 5
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.96 E-value=2.1e-29 Score=259.96 Aligned_cols=213 Identities=22% Similarity=0.304 Sum_probs=193.9
Q ss_pred CCCCCCCccEEEEEe--eEEcchhhhcccCcccccccCCccccccchhhhHHHHHHHHHHHHHHhhcCCCCCCcceEEEe
Q 007950 138 DPAWSMDLSTVLRVK--TVHISSPILAAKSPFFYKVNVPSLVYAFCIPWFLLLWLVILCIFLQLFSNGMRESEQRYVTLR 215 (583)
Q Consensus 138 ~~~~~~~~Dv~l~v~--~~~aHr~iLaa~S~yF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~es~~~~v~l~ 215 (583)
+......+||+|.|+ +|+|||.||||||.|||+ |+.+||+|+.|+.|+|+
T Consensus 38 l~~~e~y~DVtfvve~~rfpAHRvILAaRs~yFRA----------------------------lLYgGm~Es~q~~ipLq 89 (620)
T KOG4350|consen 38 LFTSEDYSDVTFVVEDTRFPAHRVILAARSSYFRA----------------------------LLYGGMQESHQQLIPLQ 89 (620)
T ss_pred HhhcCcccceEEEEeccccchhhhhHHHHHHHHHH----------------------------HHhhhhhhhhhcccccc
Confidence 334456899999995 699999999999999999 99999999999999998
Q ss_pred cCCCCHHHHHHHHhhhccCccccCC--cchHHHHHHHhchhhhcchhhhhhhccccCCCCchhhhhhcccchhhhhhhcc
Q 007950 216 IHASEEAALMELLNFMYSSTLSTTT--PTALLDVLMAADKFEVASCMRYCSRLLRNLPMTCESALLYLDLPSSVLMADAV 293 (583)
Q Consensus 216 ~~~~~~~~f~~lL~fiYtg~l~i~~--~~~v~~lL~aAd~~~v~~l~~~C~~~L~~~~l~~~n~~~~l~~a~~~~~~~~~ 293 (583)
+-..++|+.+|+|||||++.++. .+.+++.|.+|++|+...|..+.++||++ -+..+|+|.++..|..| +.
T Consensus 90 --~t~~eAF~~lLrYiYtg~~~l~~~~ed~lld~LslAh~Ygf~~Le~aiSeYl~~-iL~~~NvCmifdaA~ly----~l 162 (620)
T KOG4350|consen 90 --ETNSEAFRALLRYIYTGKIDLAGVEEDILLDYLSLAHRYGFIQLETAISEYLKE-ILKNENVCMIFDAAYLY----QL 162 (620)
T ss_pred --cccHHHHHHHHHHHhhcceecccchHHHHHHHHHHHHhcCcHHHHHHHHHHHHH-HHcccceeeeeeHHHHh----cc
Confidence 78899999999999999998754 26789999999999999999999999999 69999999999999888 78
Q ss_pred HHHHHHHHHHHHHhcccccccchhhhCCCHHHHHHHhcCCCccccchhHHHHHHHHHHhhcCCChhhHHhhhcccccccc
Q 007950 294 QPLTDTAKQFLAARYKDISKFQEEVLNLPLAGIEAVLASDDLQIASEDAVYDFALKWARTHYPKLEERREILGSRLGRLI 373 (583)
Q Consensus 294 ~~L~~~~~~fi~~~f~~v~~~~~~f~~L~~~~l~~lL~sd~L~v~sE~~vf~avl~Wi~~~~~~~~~R~~~l~~~Ll~~I 373 (583)
.+|.+.|..|+.+|..++.. .+.|..|+.+.|+++|.+|..- +-|.++|.|+.+|-++|. ++.. ..+++.|
T Consensus 163 ~~Lt~~C~mfmDrnA~~lL~-~~sFn~LSk~sL~e~l~RDsFf-ApE~~IFlAv~~W~~~Ns------ke~~-k~~~~~V 233 (620)
T KOG4350|consen 163 TDLTDYCMMFMDRNADQLLE-DPSFNRLSKDSLKELLARDSFF-APELKIFLAVRSWHQNNS------KEAS-KVLLELV 233 (620)
T ss_pred hHHHHHHHHHHhcCHHhhhc-CcchhhhhHHHHHHHHhhhccc-chHHHHHHHHHHHHhcCc------hhhH-HHHHHHH
Confidence 99999999999999999999 9999999999999999999886 579999999999999982 2222 5799999
Q ss_pred ccCCCCHHHHHhhccCCCCCc
Q 007950 374 RFPYMTCRKLKKVLTCNDFDP 394 (583)
Q Consensus 374 Rfplm~~~~L~~~v~~~~l~~ 394 (583)
|+|+|+..+|..++.+.++.+
T Consensus 234 RLPLm~lteLLnvVRPsGlls 254 (620)
T KOG4350|consen 234 RLPLMTLTELLNVVRPSGLLS 254 (620)
T ss_pred hhhhccHHHHHhccCcccCcC
Confidence 999999999999999988864
No 6
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=99.86 E-value=3.9e-22 Score=210.98 Aligned_cols=218 Identities=23% Similarity=0.354 Sum_probs=192.4
Q ss_pred CCCCCCCCccEEEEEe-------eEEcchhhhcccCcccccccCCccccccchhhhHHHHHHHHHHHHHHhhcCCCCCCc
Q 007950 137 IDPAWSMDLSTVLRVK-------TVHISSPILAAKSPFFYKVNVPSLVYAFCIPWFLLLWLVILCIFLQLFSNGMRESEQ 209 (583)
Q Consensus 137 ~~~~~~~~~Dv~l~v~-------~~~aHr~iLaa~S~yF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~es~~ 209 (583)
.+......+|+.|.|+ .+||||.|||..|.+|.+ ||++++.|...
T Consensus 107 ~l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFda----------------------------Mf~g~~a~~~s 158 (521)
T KOG2075|consen 107 ALFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDA----------------------------MFYGGLAEDAS 158 (521)
T ss_pred hhccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHH----------------------------HhccCcccccC
Confidence 3445567789999985 499999999999999999 99999999877
Q ss_pred ceEEEecCCCCHHHHHHHHhhhccCccccCCcchHHHHHHHhchhhhcchhhhhhhccccCCCCchhhhhhccc-chhhh
Q 007950 210 RYVTLRIHASEEAALMELLNFMYSSTLSTTTPTALLDVLMAADKFEVASCMRYCSRLLRNLPMTCESALLYLDL-PSSVL 288 (583)
Q Consensus 210 ~~v~l~~~~~~~~~f~~lL~fiYtg~l~i~~~~~v~~lL~aAd~~~v~~l~~~C~~~L~~~~l~~~n~~~~l~~-a~~~~ 288 (583)
.+|.++ ++++++|..+|+|||++.+.+.. ++++.+|.+|++|-++.|.+.|.+||+. .+...|++..+.. |..+
T Consensus 159 ~ei~lp--dvepaaFl~~L~flYsdev~~~~-dtvi~tl~~AkKY~VpaLer~CVkflr~-~l~~~naf~~L~q~A~lf- 233 (521)
T KOG2075|consen 159 LEIRLP--DVEPAAFLAFLRFLYSDEVKLAA-DTVITTLYAAKKYLVPALERQCVKFLRK-NLMADNAFLELFQRAKLF- 233 (521)
T ss_pred ceeecC--CcChhHhHHHHHHHhcchhhhhH-HHHHHHHHHHHHhhhHHHHHHHHHHHHH-hcCChHHHHHHHHHHHhh-
Confidence 788887 99999999999999999999998 9999999999999999999999999999 7888888766655 5444
Q ss_pred hhhccHHHHHHHHHHHHHhcccccccchhhhCCC--HHHHHHHhcCCCccccchhHHHHHHHHHHhhcCC------Chhh
Q 007950 289 MADAVQPLTDTAKQFLAARYKDISKFQEEVLNLP--LAGIEAVLASDDLQIASEDAVYDFALKWARTHYP------KLEE 360 (583)
Q Consensus 289 ~~~~~~~L~~~~~~fi~~~f~~v~~~~~~f~~L~--~~~l~~lL~sd~L~v~sE~~vf~avl~Wi~~~~~------~~~~ 360 (583)
.-++|.+.|.+-|..++++... .|.|.... .+.++++|+++.|.+. |..+|+|+++|+....+ +.+.
T Consensus 234 ---~ep~Li~~c~e~id~~~~~al~-~EGf~did~~~dt~~evl~r~~l~~~-e~~lfeA~lkw~~~e~~rs~~~~~~~~ 308 (521)
T KOG2075|consen 234 ---DEPSLISICLEVIDKSFEDALT-PEGFCDIDSTRDTYEEVLRRDTLEAR-EFRLFEAALKWAEAECQRSGGPVNGQN 308 (521)
T ss_pred ---cCHHHHHHHHHHhhhHHHhhhC-ccceeehhhHHHHHHHHHhhcccchh-HHHHHHHHHhhccCcchhhcCCCCccc
Confidence 5689999999999999999999 99999888 9999999999999985 99999999999987532 2446
Q ss_pred HHhhhccccccccccCCCCHHHHHhhccCCCCC
Q 007950 361 RREILGSRLGRLIRFPYMTCRKLKKVLTCNDFD 393 (583)
Q Consensus 361 R~~~l~~~Ll~~IRfplm~~~~L~~~v~~~~l~ 393 (583)
+++.+ ...+..||||+|..+++..-+++.++.
T Consensus 309 ~~~vl-~~~l~lirfp~m~~Eefa~~~e~sgIl 340 (521)
T KOG2075|consen 309 KRKVL-GRALSLIRFPFMNIEEFARGVEQSGIL 340 (521)
T ss_pred hhhhh-hheeeeecccccchhhhccCccccCCc
Confidence 77788 799999999999999998777776664
No 7
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=99.71 E-value=8.2e-18 Score=146.57 Aligned_cols=103 Identities=32% Similarity=0.612 Sum_probs=92.7
Q ss_pred hhhhcccchhhhhhhccHHHHHHHHHHHHHhcccccccchhhhCCCHHHHHHHhcCCCccccchhHHHHHHHHHHhhcCC
Q 007950 277 ALLYLDLPSSVLMADAVQPLTDTAKQFLAARYKDISKFQEEVLNLPLAGIEAVLASDDLQIASEDAVYDFALKWARTHYP 356 (583)
Q Consensus 277 ~~~~l~~a~~~~~~~~~~~L~~~~~~fi~~~f~~v~~~~~~f~~L~~~~l~~lL~sd~L~v~sE~~vf~avl~Wi~~~~~ 356 (583)
|+.++.+|+.| ++..|.++|.+||..||.++.+ +++|.+||.+.+..+|++++|++.+|.+||+++++|++++
T Consensus 1 C~~i~~~A~~~----~~~~L~~~~~~~i~~nf~~v~~-~~~f~~L~~~~l~~iL~~~~l~v~~E~~v~~av~~W~~~~-- 73 (103)
T PF07707_consen 1 CLSIYRLAEKY----GLEELAEACLRFIAKNFNEVSK-SDEFLELPFDQLIEILSSDDLNVSSEDDVFEAVLRWLKHN-- 73 (103)
T ss_dssp HHHHHHHHHHT----T-HHHHHHHHHHHHHTHHHHTT-SHHHHCS-HHHHHHHHHTSS--ECTCCCHHHHHHHHHHCT--
T ss_pred ChhHHHHHHHc----ChHHHHHHHHHHHHHHHHHHcc-chhhhcCCHHHHHHHHhccccccccHHHHHHHHHHHHHhC--
Confidence 77899999988 8999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred ChhhHHhhhccccccccccCCCCHHHHHhhcc
Q 007950 357 KLEERREILGSRLGRLIRFPYMTCRKLKKVLT 388 (583)
Q Consensus 357 ~~~~R~~~l~~~Ll~~IRfplm~~~~L~~~v~ 388 (583)
.++|.+++ ++|+++||||+|++++|.+.++
T Consensus 74 -~~~r~~~~-~~Ll~~iR~~~l~~~~L~~~v~ 103 (103)
T PF07707_consen 74 -PENREEHL-KELLSCIRFPLLSPEELQNVVE 103 (103)
T ss_dssp -HHHHTTTH-HHHHCCCHHHCT-HHHHHHCCT
T ss_pred -HHHHHHHH-HHHHHhCCcccCCHHHHHHHHC
Confidence 77799988 8999999999999999998763
No 8
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.70 E-value=3.3e-17 Score=170.33 Aligned_cols=176 Identities=17% Similarity=0.295 Sum_probs=164.5
Q ss_pred CCCCccEEEEE--eeEEcchhhhcccCcccccccCCccccccchhhhHHHHHHHHHHHHHHhhcCCCCCCcceEEEec--
Q 007950 141 WSMDLSTVLRV--KTVHISSPILAAKSPFFYKVNVPSLVYAFCIPWFLLLWLVILCIFLQLFSNGMRESEQRYVTLRI-- 216 (583)
Q Consensus 141 ~~~~~Dv~l~v--~~~~aHr~iLaa~S~yF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~es~~~~v~l~~-- 216 (583)
.+..+||++.. .+.+.||.-|. .|+||++ ||.|.++|+++..|.|.|
T Consensus 66 q~enSDv~l~alg~eWrlHk~yL~-QS~yf~s----------------------------mf~Gtw~es~~~iIqleI~D 116 (488)
T KOG4682|consen 66 QGENSDVILEALGFEWRLHKPYLF-QSEYFKS----------------------------MFSGTWKESSMNIIQLEIPD 116 (488)
T ss_pred cCCCcceehhhccceeeeeeeeee-ccHHHHH----------------------------HhccccChhhCceEEEEcCC
Confidence 46789999987 47999999995 5899999 999999999999888776
Q ss_pred CCCCHHHHHHHHhhhccCccccCCcchHHHHHHHhchhhhcchhhhhhhccccCCCCchhhhhhcccchhhhhhhccHHH
Q 007950 217 HASEEAALMELLNFMYSSTLSTTTPTALLDVLMAADKFEVASCMRYCSRLLRNLPMTCESALLYLDLPSSVLMADAVQPL 296 (583)
Q Consensus 217 ~~~~~~~f~~lL~fiYtg~l~i~~~~~v~~lL~aAd~~~v~~l~~~C~~~L~~~~l~~~n~~~~l~~a~~~~~~~~~~~L 296 (583)
+.++.++|..++.-+|.++++|.. +.+..+|++|.+++++++.+.|.+.+.+ .|+++|++.+++.+..| +...+
T Consensus 117 p~Id~~al~~a~gsLY~dEveI~l-~dv~gvlAaA~~lqldgl~qrC~evMie-~lspkta~~yYea~ckY----gle~v 190 (488)
T KOG4682|consen 117 PNIDVVALQVAFGSLYRDEVEIKL-SDVVGVLAAACLLQLDGLIQRCGEVMIE-TLSPKTACGYYEAACKY----GLESV 190 (488)
T ss_pred CcccHHHHHHHHhhhhhhheeccH-HHHHHHHHHHHHHHHhhHHHHHHHHHHH-hcChhhhhHhhhhhhhh----hhHHH
Confidence 569999999999999999999999 9999999999999999999999999999 89999999999999999 78999
Q ss_pred HHHHHHHHHHhcccccccchhhhCCCHHHHHHHhcCCCccccc-hhHHHHHHHHHHh
Q 007950 297 TDTAKQFLAARYKDISKFQEEVLNLPLAGIEAVLASDDLQIAS-EDAVYDFALKWAR 352 (583)
Q Consensus 297 ~~~~~~fi~~~f~~v~~~~~~f~~L~~~~l~~lL~sd~L~v~s-E~~vf~avl~Wi~ 352 (583)
++.|.+++..|+-.+.. ..-+.+++.+.+..+|.|.+|-|-+ |..+|..+..|+-
T Consensus 191 k~kc~ewl~~nl~~i~~-~q~l~ei~~~Lm~~ll~SpnLfvmq~EfdLyttlk~Wmf 246 (488)
T KOG4682|consen 191 KKKCLEWLLNNLMTIQN-VQLLKEISINLMKQLLGSPNLFVMQVEFDLYTTLKKWMF 246 (488)
T ss_pred HHHHHHHHHHhhHhhhh-HHHHHhcCHHHHHHHhCCCCeEEEEeeehHHHHHHHHHH
Confidence 99999999999999988 7788899999999999999998876 9999999999974
No 9
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=99.60 E-value=2e-15 Score=130.22 Aligned_cols=99 Identities=28% Similarity=0.512 Sum_probs=89.8
Q ss_pred hhhhcccchhhhhhhccHHHHHHHHHHHHHhcccccccchhhhCCCHHHHHHHhcCCCccccchhHHHHHHHHHHhhcCC
Q 007950 277 ALLYLDLPSSVLMADAVQPLTDTAKQFLAARYKDISKFQEEVLNLPLAGIEAVLASDDLQIASEDAVYDFALKWARTHYP 356 (583)
Q Consensus 277 ~~~~l~~a~~~~~~~~~~~L~~~~~~fi~~~f~~v~~~~~~f~~L~~~~l~~lL~sd~L~v~sE~~vf~avl~Wi~~~~~ 356 (583)
|+.++.+|+.| ++..|.+.|.+||.+||..+.+ +++|.+||.+.+..+|++|+|+|.+|..+|+++++|++++
T Consensus 1 c~~i~~~a~~~----~~~~L~~~~~~~i~~nf~~~~~-~~~f~~L~~~~l~~iL~~d~l~v~~E~~v~~av~~W~~~~-- 73 (101)
T smart00875 1 CLGIRRFAELY----GLEELLEKALRFILKNFLEVAQ-SEEFLELSLEQLLSLLSSDDLNVPSEEEVFEAVLRWVKHD-- 73 (101)
T ss_pred CHhHHHHHHHh----ChHHHHHHHHHHHHHHHHHHhc-CcHHhcCCHHHHHHHhCcccCCCCCHHHHHHHHHHHHHCC--
Confidence 45677778777 7899999999999999999999 8999999999999999999999989999999999999998
Q ss_pred ChhhHHhhhccccccccccCCCCHHHHHh
Q 007950 357 KLEERREILGSRLGRLIRFPYMTCRKLKK 385 (583)
Q Consensus 357 ~~~~R~~~l~~~Ll~~IRfplm~~~~L~~ 385 (583)
...|. ++ ..++++||||+|++.+|..
T Consensus 74 -~~~~~-~~-~~ll~~ir~~~~~~~~l~~ 99 (101)
T smart00875 74 -PERRR-HL-PELLSHVRFPLLSPEYLLE 99 (101)
T ss_pred -HHHHH-HH-HHHHHhCCCCCCCHHHHHh
Confidence 55554 66 7999999999999998875
No 10
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.57 E-value=2.4e-15 Score=132.29 Aligned_cols=97 Identities=26% Similarity=0.474 Sum_probs=84.9
Q ss_pred CCCccEEEEEe---eEEcchhhhcccCcccccccCCccccccchhhhHHHHHHHHHHHHHHhhcC-CCCCCcceEEEecC
Q 007950 142 SMDLSTVLRVK---TVHISSPILAAKSPFFYKVNVPSLVYAFCIPWFLLLWLVILCIFLQLFSNG-MRESEQRYVTLRIH 217 (583)
Q Consensus 142 ~~~~Dv~l~v~---~~~aHr~iLaa~S~yF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~-~~es~~~~v~l~~~ 217 (583)
+..+|++|.++ +|+|||.||+++||||++ ||.+. +++.....|.+.
T Consensus 8 ~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~----------------------------~~~~~~~~~~~~~~i~~~-- 57 (111)
T PF00651_consen 8 NEFSDVTIRVGDGKTFYVHKNILAARSPYFRN----------------------------LFEGSKFKESTVPEISLP-- 57 (111)
T ss_dssp TTS--EEEEETTTEEEEE-HHHHHHHBHHHHH----------------------------HHTTTTSTTSSEEEEEET--
T ss_pred CCCCCEEEEECCCEEEeechhhhhccchhhhh----------------------------cccccccccccccccccc--
Confidence 46899999996 699999999999999999 99987 566555566666
Q ss_pred CCCHHHHHHHHhhhccCccccC-CcchHHHHHHHhchhhhcchhhhhhhcccc
Q 007950 218 ASEEAALMELLNFMYSSTLSTT-TPTALLDVLMAADKFEVASCMRYCSRLLRN 269 (583)
Q Consensus 218 ~~~~~~f~~lL~fiYtg~l~i~-~~~~v~~lL~aAd~~~v~~l~~~C~~~L~~ 269 (583)
++++++|..+++|+|+|++.++ . +++.+++.+|++|+++.|++.|+++|.+
T Consensus 58 ~~~~~~~~~~l~~~Y~~~~~~~~~-~~~~~ll~lA~~~~~~~L~~~~~~~l~~ 109 (111)
T PF00651_consen 58 DVSPEAFEAFLEYMYTGEIEINSD-ENVEELLELADKLQIPELKKACEKFLQE 109 (111)
T ss_dssp TSCHHHHHHHHHHHHHSEEEEE-T-TTHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred cccccccccccccccCCcccCCHH-HHHHHHHHHHHHhCcHHHHHHHHHHHHh
Confidence 9999999999999999999998 7 9999999999999999999999999875
No 11
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.49 E-value=5.1e-14 Score=117.07 Aligned_cols=88 Identities=26% Similarity=0.458 Sum_probs=80.7
Q ss_pred cEEEEEe--eEEcchhhhcccCcccccccCCccccccchhhhHHHHHHHHHHHHHHhhcCCCCCCcceEEEecCCCCHHH
Q 007950 146 STVLRVK--TVHISSPILAAKSPFFYKVNVPSLVYAFCIPWFLLLWLVILCIFLQLFSNGMRESEQRYVTLRIHASEEAA 223 (583)
Q Consensus 146 Dv~l~v~--~~~aHr~iLaa~S~yF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~es~~~~v~l~~~~~~~~~ 223 (583)
|+++.++ .|++||.+|+++|+||++ ||.+++.++....+.+. +.++++
T Consensus 1 dv~i~v~~~~~~~h~~iL~~~s~~f~~----------------------------~~~~~~~~~~~~~i~l~--~~~~~~ 50 (90)
T smart00225 1 DVTLVVGGKKFKAHKAVLAACSPYFKA----------------------------LFSGDFKESKKSEIYLD--DVSPED 50 (90)
T ss_pred CeEEEECCEEEehHHHHHhhcCHHHHH----------------------------HHcCCCccCCCCEEEec--CCCHHH
Confidence 5777774 699999999999999999 99998887777788887 899999
Q ss_pred HHHHHhhhccCccccCCcchHHHHHHHhchhhhcchhhhhh
Q 007950 224 LMELLNFMYSSTLSTTTPTALLDVLMAADKFEVASCMRYCS 264 (583)
Q Consensus 224 f~~lL~fiYtg~l~i~~~~~v~~lL~aAd~~~v~~l~~~C~ 264 (583)
|+.+|+|+|++++.++. .++.+++.+|++|++++|++.|+
T Consensus 51 f~~~l~~ly~~~~~~~~-~~~~~l~~~a~~~~~~~l~~~c~ 90 (90)
T smart00225 51 FRALLEFLYTGKLDLPE-ENVEELLELADYLQIPGLVELCE 90 (90)
T ss_pred HHHHHHeecCceeecCH-HHHHHHHHHHHHHCcHHHHhhhC
Confidence 99999999999999998 79999999999999999999985
No 12
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.47 E-value=8.3e-14 Score=133.55 Aligned_cols=156 Identities=15% Similarity=0.297 Sum_probs=132.5
Q ss_pred CCCCCccEEEEEe-----eEEcchhhhcccCcccccccCCccccccchhhhHHHHHHHHHHHHHHhhcCCCCCCcceEEE
Q 007950 140 AWSMDLSTVLRVK-----TVHISSPILAAKSPFFYKVNVPSLVYAFCIPWFLLLWLVILCIFLQLFSNGMRESEQRYVTL 214 (583)
Q Consensus 140 ~~~~~~Dv~l~v~-----~~~aHr~iLaa~S~yF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~es~~~~v~l 214 (583)
....++|++|.++ .++|||.||||||.+.+ |.++-.|. ..+..+
T Consensus 62 Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~Wk------------------------------faN~~dek-se~~~~ 110 (280)
T KOG4591|consen 62 EKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWK------------------------------FANGGDEK-SEELDL 110 (280)
T ss_pred hcccccceeEEecCCccccCchhhhhhhhhcchhh------------------------------hccCCCcc-hhhhcc
Confidence 3457999999984 59999999999998753 34443332 233444
Q ss_pred ecCCCCHHHHHHHHhhhccCccccCC-cchHHHHHHHhchhhhcchhhhhhhccccCCCCchhhhhhcccchhhhhhhcc
Q 007950 215 RIHASEEAALMELLNFMYSSTLSTTT-PTALLDVLMAADKFEVASCMRYCSRLLRNLPMTCESALLYLDLPSSVLMADAV 293 (583)
Q Consensus 215 ~~~~~~~~~f~~lL~fiYtg~l~i~~-~~~v~~lL~aAd~~~v~~l~~~C~~~L~~~~l~~~n~~~~l~~a~~~~~~~~~ 293 (583)
. +.++++|..+++||||+++.... .+.++++...|.+|+++-|++.|++-+-. -++++||+.++++|+.. +.
T Consensus 111 d--Dad~Ea~~t~iRWIYTDEidfk~dD~~L~el~e~An~FqLe~Lke~C~k~l~a-~l~V~NCIk~Ye~AEe~----n~ 183 (280)
T KOG4591|consen 111 D--DADFEAFHTAIRWIYTDEIDFKEDDEFLLELCELANRFQLELLKERCEKGLGA-LLHVDNCIKFYEFAEEL----NA 183 (280)
T ss_pred c--ccCHHHHHHhheeeeccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-HhhHhhHHHHHHHHHHh----hH
Confidence 4 99999999999999999998754 25678999999999999999999999999 59999999999999987 67
Q ss_pred HHHHHHHHHHHHHhcccccccchhhhCCCHHHHHHHhcCCCc
Q 007950 294 QPLTDTAKQFLAARYKDISKFQEEVLNLPLAGIEAVLASDDL 335 (583)
Q Consensus 294 ~~L~~~~~~fi~~~f~~v~~~~~~f~~L~~~~l~~lL~sd~L 335 (583)
..|...|-..|+.+..++-+ ++|.+++...|..++.+..-
T Consensus 184 ~qL~n~~~eiIA~~W~dL~~--a~FaqMs~aLLYklId~kTe 223 (280)
T KOG4591|consen 184 RQLMNVAAEIIAGAWDDLGK--ADFAQMSAALLYKLIDGKTE 223 (280)
T ss_pred HHHHHHHHHHHHhhccccCh--HHHHhccHHHHHHHHcCCCc
Confidence 89999999999999999876 89999999999999987653
No 13
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.44 E-value=2e-13 Score=153.95 Aligned_cols=118 Identities=19% Similarity=0.190 Sum_probs=99.3
Q ss_pred eeeeEeec-------ceeEEEecCCCCeEEe---ecccccceeEEeeCCeeeceeEEeccc--------ccccCccCC--
Q 007950 432 ERAYKYRP-------VKVVEFELPRQQCVVY---LDLKREECAHLFPAGRIYSQAFHLGGQ--------GFFLSAHCN-- 491 (583)
Q Consensus 432 ~~lyv~~p-------~ksVe~ydp~~~~W~~---L~~~R~~~~vavl~gklYn~lYviGG~--------g~~~dp~~n-- 491 (583)
..+|+.|+ ++++++|||.+++|.. |..+|..+++++++|+|| ++||+ .++|||.+|
T Consensus 333 ~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iY----avGG~dg~~~l~svE~YDp~~~~W 408 (571)
T KOG4441|consen 333 GKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLY----AVGGFDGEKSLNSVECYDPVTNKW 408 (571)
T ss_pred CEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEECCEEE----EEeccccccccccEEEecCCCCcc
Confidence 35677443 3689999999999998 889999999999998777 99997 357899987
Q ss_pred -----CCCCCCceEEEEEccc-------cCCC-CccccccccceeeecC---CceeecCCCCcceecceeeecccccccc
Q 007950 492 -----MDQQSSFHCFGLFLGM-------QEKG-SVSFAVDYEFAARIKP---TEEYVSKYKGNYTFTGGKAVGYRNLFGI 555 (583)
Q Consensus 492 -----M~~~R~~~~~~vl~G~-------~~~~-~lssvVd~~~aErYdP---~W~~vapm~~~~~~~g~~avg~~~~~~~ 555 (583)
|.++|+.|++++++|+ ++.. .+.++ |+||| +|+.++||+.++..+|.++++
T Consensus 409 ~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sv------e~YDP~t~~W~~~~~M~~~R~~~g~a~~~------- 475 (571)
T KOG4441|consen 409 TPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSV------ECYDPETNTWTLIAPMNTRRSGFGVAVLN------- 475 (571)
T ss_pred cccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceE------EEEcCCCCceeecCCcccccccceEEEEC-------
Confidence 9999999999999887 3333 56775 99999 999999999999999977777
Q ss_pred cccceecCCceEEECCeee
Q 007950 556 PWTAFMADDSIYFINGNLH 574 (583)
Q Consensus 556 ~~~~~~~~~~~~~i~~~~~ 574 (583)
+.||.|||.-.
T Consensus 476 --------~~iYvvGG~~~ 486 (571)
T KOG4441|consen 476 --------GKIYVVGGFDG 486 (571)
T ss_pred --------CEEEEECCccC
Confidence 78899999644
No 14
>PHA02713 hypothetical protein; Provisional
Probab=99.32 E-value=5.1e-12 Score=142.45 Aligned_cols=116 Identities=16% Similarity=0.049 Sum_probs=93.2
Q ss_pred eeeeEeec-------ceeEEEecCCCCeEEe---ecccccceeEEeeCCeeeceeEEeccc-c-------cccCccCC--
Q 007950 432 ERAYKYRP-------VKVVEFELPRQQCVVY---LDLKREECAHLFPAGRIYSQAFHLGGQ-G-------FFLSAHCN-- 491 (583)
Q Consensus 432 ~~lyv~~p-------~ksVe~ydp~~~~W~~---L~~~R~~~~vavl~gklYn~lYviGG~-g-------~~~dp~~n-- 491 (583)
+.||+.|+ .+.+++|||.+++|.. |+.+|..+++++++|+|| ++||. | ++|||.+|
T Consensus 304 ~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IY----viGG~~~~~~~~sve~Ydp~~~~W 379 (557)
T PHA02713 304 NEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIY----AIGGQNGTNVERTIECYTMGDDKW 379 (557)
T ss_pred CEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEE----EECCcCCCCCCceEEEEECCCCeE
Confidence 45777554 3578999999999988 888999999999998777 99997 2 35799876
Q ss_pred -----CCCCCCceEEEEEccc----cCCC---------------------CccccccccceeeecC---CceeecCCCCc
Q 007950 492 -----MDQQSSFHCFGLFLGM----QEKG---------------------SVSFAVDYEFAARIKP---TEEYVSKYKGN 538 (583)
Q Consensus 492 -----M~~~R~~~~~~vl~G~----~~~~---------------------~lssvVd~~~aErYdP---~W~~vapm~~~ 538 (583)
|+++|..+++++++|+ .|.. .+++ | |+||| +|+.++||+.+
T Consensus 380 ~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~-v-----e~YDP~td~W~~v~~m~~~ 453 (557)
T PHA02713 380 KMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNK-V-----IRYDTVNNIWETLPNFWTG 453 (557)
T ss_pred EECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccce-E-----EEECCCCCeEeecCCCCcc
Confidence 9999999999988777 1211 1334 3 99999 89999999999
Q ss_pred ceecceeeecccccccccccceecCCceEEECCe
Q 007950 539 YTFTGGKAVGYRNLFGIPWTAFMADDSIYFINGN 572 (583)
Q Consensus 539 ~~~~g~~avg~~~~~~~~~~~~~~~~~~~~i~~~ 572 (583)
+..+|.++++ ++||.+||.
T Consensus 454 r~~~~~~~~~---------------~~IYv~GG~ 472 (557)
T PHA02713 454 TIRPGVVSHK---------------DDIYVVCDI 472 (557)
T ss_pred cccCcEEEEC---------------CEEEEEeCC
Confidence 9988877666 678888874
No 15
>PHA02790 Kelch-like protein; Provisional
Probab=99.30 E-value=8.2e-12 Score=138.38 Aligned_cols=113 Identities=18% Similarity=-0.013 Sum_probs=89.6
Q ss_pred eeeeEeecc---eeEEEecCCCCeEEe---ecccccceeEEeeCCeeeceeEEeccc------ccccCccCC-------C
Q 007950 432 ERAYKYRPV---KVVEFELPRQQCVVY---LDLKREECAHLFPAGRIYSQAFHLGGQ------GFFLSAHCN-------M 492 (583)
Q Consensus 432 ~~lyv~~p~---ksVe~ydp~~~~W~~---L~~~R~~~~vavl~gklYn~lYviGG~------g~~~dp~~n-------M 492 (583)
+.+|+.|+. +++++|||.+++|.. |+.+|..+++++++|+|| ++||. ..+|||.++ |
T Consensus 319 ~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IY----viGG~~~~~~~ve~ydp~~~~W~~~~~m 394 (480)
T PHA02790 319 NKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIY----VIGGHSETDTTTEYLLPNHDQWQFGPST 394 (480)
T ss_pred CEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEE----EecCcCCCCccEEEEeCCCCEEEeCCCC
Confidence 467776653 679999999999998 888899999999997776 99996 236799886 9
Q ss_pred CCCCCceEEEEEccccC-CCCccccccccceeeecC---CceeecCCCCcceecceeeecccccccccc
Q 007950 493 DQQSSFHCFGLFLGMQE-KGSVSFAVDYEFAARIKP---TEEYVSKYKGNYTFTGGKAVGYRNLFGIPW 557 (583)
Q Consensus 493 ~~~R~~~~~~vl~G~~~-~~~lssvVd~~~aErYdP---~W~~vapm~~~~~~~g~~avg~~~~~~~~~ 557 (583)
+.+|..+++++++|+.. -|. .+ |+||| +|+.++||+.++..+|.+++++ .++.+..
T Consensus 395 ~~~r~~~~~~~~~~~IYv~GG--~~------e~ydp~~~~W~~~~~m~~~r~~~~~~v~~~-~IYviGG 454 (480)
T PHA02790 395 YYPHYKSCALVFGRRLFLVGR--NA------EFYCESSNTWTLIDDPIYPRDNPELIIVDN-KLLLIGG 454 (480)
T ss_pred CCccccceEEEECCEEEEECC--ce------EEecCCCCcEeEcCCCCCCccccEEEEECC-EEEEECC
Confidence 99999999999999821 111 23 99999 8999999999998888776654 2554443
No 16
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.21 E-value=6.2e-12 Score=140.11 Aligned_cols=137 Identities=15% Similarity=0.263 Sum_probs=115.2
Q ss_pred CCCccEEEEEe-eEEcchhhhcccCcccccccCCccccccchhhhHHHHHHHHHHHHHHhhcCCCCCCcceEEEecCCCC
Q 007950 142 SMDLSTVLRVK-TVHISSPILAAKSPFFYKVNVPSLVYAFCIPWFLLLWLVILCIFLQLFSNGMRESEQRYVTLRIHASE 220 (583)
Q Consensus 142 ~~~~Dv~l~v~-~~~aHr~iLaa~S~yF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~es~~~~v~l~~~~~~ 220 (583)
..+|+|++.-+ .++||+++|.||++||.. ||..-+.|+.. +++....+.
T Consensus 710 ~~d~~i~~KDGkvl~aHkc~L~aRlEYF~s----------------------------mf~~~w~E~sS--~t~~~~p~~ 759 (1267)
T KOG0783|consen 710 TMDTVIKLKDGKVLKAHKCFLSARLEYFSS----------------------------MFQFVWMESSS--ITVNLSPLT 759 (1267)
T ss_pred ceeEEEEecCCcCcccceeEeeeHHHHHHH----------------------------HHHHHHhhhcc--ceeecCcch
Confidence 44566666554 499999999999999999 88887777665 555533566
Q ss_pred HHHHHHHHhhhc-cCcccc----CCcchHHHHHHHhchhhhcchhhhhhhccccCCCCchhhhhhcccchhhhhhhccHH
Q 007950 221 EAALMELLNFMY-SSTLST----TTPTALLDVLMAADKFEVASCMRYCSRLLRNLPMTCESALLYLDLPSSVLMADAVQP 295 (583)
Q Consensus 221 ~~~f~~lL~fiY-tg~l~i----~~~~~v~~lL~aAd~~~v~~l~~~C~~~L~~~~l~~~n~~~~l~~a~~~~~~~~~~~ 295 (583)
.+.+..+|+|+| +++..+ ...+-+.++|..||.|-+.+|+..|+..|.+ .++..+|..++++|-.| ++.+
T Consensus 760 ~e~m~ivLdylYs~d~~~~~k~~~~~dF~~~il~iaDqlli~~Lk~Ice~~ll~-kl~lk~~~~llefaamY----~ak~ 834 (1267)
T KOG0783|consen 760 VEHMSIVLDYLYSDDKVELFKDLKESDFMFEILSIADQLLILELKSICEQSLLR-KLNLKTLPTLLEFAAMY----HAKE 834 (1267)
T ss_pred HHHHHHHHHHHHccchHHHHhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHh-HhcccchHHHHHHHHHh----hHHH
Confidence 999999999999 566553 1125688999999999999999999999999 89999999999999998 8999
Q ss_pred HHHHHHHHHHHhcccccc
Q 007950 296 LTDTAKQFLAARYKDISK 313 (583)
Q Consensus 296 L~~~~~~fi~~~f~~v~~ 313 (583)
|+..|++||..|+..+..
T Consensus 835 L~~~C~dfic~N~~~~Le 852 (1267)
T KOG0783|consen 835 LYSRCIDFICHNIEFFLE 852 (1267)
T ss_pred HHHHHHHHHHHhHHHHHH
Confidence 999999999999888765
No 17
>PHA03098 kelch-like protein; Provisional
Probab=99.11 E-value=1.4e-09 Score=121.60 Aligned_cols=247 Identities=12% Similarity=0.081 Sum_probs=145.2
Q ss_pred CCCchhhhhhcccchhhhhhhccHHHHHHHHHHHHHhcccccccchhhhCCCHHHHHHHhcCCCccccchhHHHHHHHHH
Q 007950 271 PMTCESALLYLDLPSSVLMADAVQPLTDTAKQFLAARYKDISKFQEEVLNLPLAGIEAVLASDDLQIASEDAVYDFALKW 350 (583)
Q Consensus 271 ~l~~~n~~~~l~~a~~~~~~~~~~~L~~~~~~fi~~~f~~v~~~~~~f~~L~~~~l~~lL~sd~L~v~sE~~vf~avl~W 350 (583)
.++.+|+..++..|+.+ ..+.|++.|.+|+.+++.. .+ .-++..+.. . .+-.++.+++..+
T Consensus 72 ~i~~~~~~~ll~~A~~l----~~~~l~~~C~~~l~~~l~~-~n-c~~~~~~a~----------~---~~~~~L~~~~~~~ 132 (534)
T PHA03098 72 NITSNNVKDILSIANYL----IIDFLINLCINYIIKIIDD-NN-CIDIYRFSF----------F---YGCKKLYSAAYNY 132 (534)
T ss_pred EEcHHHHHHHHHHHHHh----CcHHHHHHHHHHHHHhCCH-hH-HHHHHHHHH----------H---cCcHHHHHHHHHH
Confidence 57889999999999988 7899999999999876532 11 112221110 0 1223566677777
Q ss_pred HhhcCCChhhHHhhhccccccccccCCCCHHHHHhhccCCCCC--ch-HHHHHH------------------HHHHhhhc
Q 007950 351 ARTHYPKLEERREILGSRLGRLIRFPYMTCRKLKKVLTCNDFD--PE-LASKVV------------------LESLFFKA 409 (583)
Q Consensus 351 i~~~~~~~~~R~~~l~~~Ll~~IRfplm~~~~L~~~v~~~~l~--~~-~~~~~l------------------~ea~~~~~ 409 (583)
+..+ . ..+.+.=.|..++.+.|.++++.+.+. ++ ...+.+ .+..++..
T Consensus 133 i~~n---f--------~~v~~~~~f~~l~~~~l~~ll~~~~L~v~~E~~v~~av~~W~~~~~~~r~~~~~~ll~~vR~~~ 201 (534)
T PHA03098 133 IRNN---I--------ELIYNDPDFIYLSKNELIKILSDDKLNVSSEDVVLEIIIKWLTSKKNNKYKDICLILKVLRITF 201 (534)
T ss_pred HHHH---H--------HHHhcCchhhcCCHHHHHHHhcCCCcCcCCHHHHHHHHHHHHhcChhhhHhHHHHHHhhccccc
Confidence 7665 1 233344456667777777777766553 11 111111 11112211
Q ss_pred cchhh-hhh------------hhcccc------------ccccccc--eeeeeEeec----ceeEEEecCCCCeEEeecc
Q 007950 410 ETPYR-QRA------------LAAEEA------------NSTYRRF--VERAYKYRP----VKVVEFELPRQQCVVYLDL 458 (583)
Q Consensus 410 ~~p~~-q~~------------l~s~~t------------~~~pR~~--~~~lyv~~p----~ksVe~ydp~~~~W~~L~~ 458 (583)
..+.. ... ..+++. ...+|.. ...+++.++ ...+.+|++.+++|..++.
T Consensus 202 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 281 (534)
T PHA03098 202 LSEEGIKKLKRWKLRIKKKKIVFNKRCIKIIYSKKYNLNKILPRSSTFGSIIYIHITMSIFTYNYITNYSPLSEINTIID 281 (534)
T ss_pred cCHHHHHHHHHHHhhcCCcceeccccchHHHHHHHhcccCCCcCccCCCcceEeecccchhhceeeecchhhhhcccccC
Confidence 00000 000 000000 0001211 122333222 2345678888999998532
Q ss_pred -c-ccceeEEeeCCeeeceeEEecccc---------cccCccCC-------CCCCCCceEEEEEccc-------cCCCCc
Q 007950 459 -K-REECAHLFPAGRIYSQAFHLGGQG---------FFLSAHCN-------MDQQSSFHCFGLFLGM-------QEKGSV 513 (583)
Q Consensus 459 -~-R~~~~vavl~gklYn~lYviGG~g---------~~~dp~~n-------M~~~R~~~~~~vl~G~-------~~~~~l 513 (583)
+ +..+++++++++|| ++||.. ..|||.++ |+.+|..|++++++|. ++.+.+
T Consensus 282 ~~~~~~~~~~~~~~~ly----v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~ 357 (534)
T PHA03098 282 IHYVYCFGSVVLNNVIY----FIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISL 357 (534)
T ss_pred ccccccceEEEECCEEE----EECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEec
Confidence 2 34568899996655 999971 23577765 9999999999987666 323344
Q ss_pred cccccccceeeecC---CceeecCCCCcceecceeeecccccccccccceecCCceEEECCe
Q 007950 514 SFAVDYEFAARIKP---TEEYVSKYKGNYTFTGGKAVGYRNLFGIPWTAFMADDSIYFINGN 572 (583)
Q Consensus 514 ssvVd~~~aErYdP---~W~~vapm~~~~~~~g~~avg~~~~~~~~~~~~~~~~~~~~i~~~ 572 (583)
+++ |+||| +|+.++|||.++..+++++++ +.+|.+||.
T Consensus 358 ~~v------~~yd~~~~~W~~~~~lp~~r~~~~~~~~~---------------~~iYv~GG~ 398 (534)
T PHA03098 358 NTV------ESWKPGESKWREEPPLIFPRYNPCVVNVN---------------NLIYVIGGI 398 (534)
T ss_pred ceE------EEEcCCCCceeeCCCcCcCCccceEEEEC---------------CEEEEECCc
Confidence 554 99999 999999999998777655544 577777774
No 18
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=98.91 E-value=5e-09 Score=110.88 Aligned_cols=108 Identities=13% Similarity=0.043 Sum_probs=76.7
Q ss_pred eeEEEecCCCCeEEe---ecc-cccceeEEeeCCeeeceeEEeccc---c------ccc--CccCC-------CCCCCC-
Q 007950 441 KVVEFELPRQQCVVY---LDL-KREECAHLFPAGRIYSQAFHLGGQ---G------FFL--SAHCN-------MDQQSS- 497 (583)
Q Consensus 441 ksVe~ydp~~~~W~~---L~~-~R~~~~vavl~gklYn~lYviGG~---g------~~~--dp~~n-------M~~~R~- 497 (583)
+.+++|||.+++|.. |+. +|..+++++++|+|| ++||. + +.| ||..+ |+.+|.
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iy----v~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~ 243 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLL----LINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSS 243 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcCCCceEEEECCEEE----EEeeeeCCCccchheEEEEecCCCceeeecCCCCCCCCC
Confidence 579999999999998 765 578899999997766 99996 1 112 45543 877763
Q ss_pred ------ceEEEEEccc-------cCCC-----------------CccccccccceeeecC---CceeecCCCCcceecce
Q 007950 498 ------FHCFGLFLGM-------QEKG-----------------SVSFAVDYEFAARIKP---TEEYVSKYKGNYTFTGG 544 (583)
Q Consensus 498 ------~~~~~vl~G~-------~~~~-----------------~lssvVd~~~aErYdP---~W~~vapm~~~~~~~g~ 544 (583)
.|++++++|+ +..+ .+.+ | |+||| +|+.+++||.++..++.
T Consensus 244 ~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----e~yd~~~~~W~~~~~lp~~~~~~~~ 317 (346)
T TIGR03547 244 SQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWS-S-----EVYALDNGKWSKVGKLPQGLAYGVS 317 (346)
T ss_pred ccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeE-e-----eEEEecCCcccccCCCCCCceeeEE
Confidence 4445666655 2111 1123 3 99999 99999999998876554
Q ss_pred eeecccccccccccceecCCceEEECCee
Q 007950 545 KAVGYRNLFGIPWTAFMADDSIYFINGNL 573 (583)
Q Consensus 545 ~avg~~~~~~~~~~~~~~~~~~~~i~~~~ 573 (583)
.+++ ++||+|||-.
T Consensus 318 ~~~~---------------~~iyv~GG~~ 331 (346)
T TIGR03547 318 VSWN---------------NGVLLIGGEN 331 (346)
T ss_pred EEcC---------------CEEEEEeccC
Confidence 3444 8899999964
No 19
>PLN02153 epithiospecifier protein
Probab=98.71 E-value=6.9e-08 Score=102.23 Aligned_cols=117 Identities=15% Similarity=0.096 Sum_probs=85.7
Q ss_pred eeeeEeec------ceeEEEecCCCCeEEe---e-----cccccceeEEeeCCeeeceeEEeccc---c-----------
Q 007950 432 ERAYKYRP------VKVVEFELPRQQCVVY---L-----DLKREECAHLFPAGRIYSQAFHLGGQ---G----------- 483 (583)
Q Consensus 432 ~~lyv~~p------~ksVe~ydp~~~~W~~---L-----~~~R~~~~vavl~gklYn~lYviGG~---g----------- 483 (583)
..||++|+ .+.+++||+.+++|.. | |.+|..|++++.+++|| |+||+ +
T Consensus 86 ~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iy----v~GG~~~~~~~~~~~~~~~v 161 (341)
T PLN02153 86 TKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVY----VFGGVSKGGLMKTPERFRTI 161 (341)
T ss_pred CEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEE----EECCccCCCccCCCcccceE
Confidence 46777654 3578999999999997 4 56789999999997766 99996 1
Q ss_pred cccCccCC-------C---CCCCCceEEEEEcccc----CC-------C----CccccccccceeeecC---CceeecC-
Q 007950 484 FFLSAHCN-------M---DQQSSFHCFGLFLGMQ----EK-------G----SVSFAVDYEFAARIKP---TEEYVSK- 534 (583)
Q Consensus 484 ~~~dp~~n-------M---~~~R~~~~~~vl~G~~----~~-------~----~lssvVd~~~aErYdP---~W~~vap- 534 (583)
..|||.++ | ..+|..|++++++|+. +. + .++. | ++||| +|+.+++
T Consensus 162 ~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~-v-----~~yd~~~~~W~~~~~~ 235 (341)
T PLN02153 162 EAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNA-V-----QFFDPASGKWTEVETT 235 (341)
T ss_pred EEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCc-e-----EEEEcCCCcEEecccc
Confidence 12577665 3 3789999998877661 10 1 1233 3 99999 9999975
Q ss_pred --CCCcceecceeeecccccccccccceecCCceEEECCee
Q 007950 535 --YKGNYTFTGGKAVGYRNLFGIPWTAFMADDSIYFINGNL 573 (583)
Q Consensus 535 --m~~~~~~~g~~avg~~~~~~~~~~~~~~~~~~~~i~~~~ 573 (583)
+|.++..++..++| ++||.+||..
T Consensus 236 g~~P~~r~~~~~~~~~---------------~~iyv~GG~~ 261 (341)
T PLN02153 236 GAKPSARSVFAHAVVG---------------KYIIIFGGEV 261 (341)
T ss_pred CCCCCCcceeeeEEEC---------------CEEEEECccc
Confidence 57777777766666 6788888864
No 20
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=98.69 E-value=7.4e-08 Score=101.92 Aligned_cols=116 Identities=15% Similarity=0.044 Sum_probs=77.6
Q ss_pred eeeeEeecc--eeEEEecC--CCCeEEe---ec-ccccceeEEeeCCeeeceeEEecccc--------------cccCcc
Q 007950 432 ERAYKYRPV--KVVEFELP--RQQCVVY---LD-LKREECAHLFPAGRIYSQAFHLGGQG--------------FFLSAH 489 (583)
Q Consensus 432 ~~lyv~~p~--ksVe~ydp--~~~~W~~---L~-~~R~~~~vavl~gklYn~lYviGG~g--------------~~~dp~ 489 (583)
..+|+.++. +.+..||+ .+++|.. |+ .+|..+++++++|+|| ++||.. ++|||.
T Consensus 18 ~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~iY----v~GG~~~~~~~~~~~~~~~v~~Yd~~ 93 (346)
T TIGR03547 18 DKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKLY----VFGGIGKANSEGSPQVFDDVYRYDPK 93 (346)
T ss_pred CEEEEEccccCCeeEEEECCCCCCCceECCCCCCCCcccceEEEECCEEE----EEeCCCCCCCCCcceecccEEEEECC
Confidence 467776553 56778885 6789998 66 4788999999997666 999962 135887
Q ss_pred CC--------CCCCCCceEEE-EEccc-------cCC---C-------------------------------Cccccccc
Q 007950 490 CN--------MDQQSSFHCFG-LFLGM-------QEK---G-------------------------------SVSFAVDY 519 (583)
Q Consensus 490 ~n--------M~~~R~~~~~~-vl~G~-------~~~---~-------------------------------~lssvVd~ 519 (583)
.| |+..|..++.+ +++|+ ++. + .+++ |
T Consensus 94 ~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v-- 170 (346)
T TIGR03547 94 KNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKN-V-- 170 (346)
T ss_pred CCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccce-E--
Confidence 76 33444555554 45555 211 0 0133 3
Q ss_pred cceeeecC---CceeecCCCC-cceecceeeecccccccccccceecCCceEEECCe
Q 007950 520 EFAARIKP---TEEYVSKYKG-NYTFTGGKAVGYRNLFGIPWTAFMADDSIYFINGN 572 (583)
Q Consensus 520 ~~aErYdP---~W~~vapm~~-~~~~~g~~avg~~~~~~~~~~~~~~~~~~~~i~~~ 572 (583)
|+||| +|+.+++||. ++..++.++++ ++||++||.
T Consensus 171 ---~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~---------------~~iyv~GG~ 209 (346)
T TIGR03547 171 ---LSYDPSTNQWRNLGENPFLGTAGSAIVHKG---------------NKLLLINGE 209 (346)
T ss_pred ---EEEECCCCceeECccCCCCcCCCceEEEEC---------------CEEEEEeee
Confidence 99999 8999999986 56666555544 567777764
No 21
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=98.65 E-value=1.1e-07 Score=102.24 Aligned_cols=107 Identities=11% Similarity=0.067 Sum_probs=74.2
Q ss_pred eeEEEecCCCCeEEe---ecc-cccceeEEeeCCeeeceeEEeccc---c--------cccCccCC-------CCCCCCc
Q 007950 441 KVVEFELPRQQCVVY---LDL-KREECAHLFPAGRIYSQAFHLGGQ---G--------FFLSAHCN-------MDQQSSF 498 (583)
Q Consensus 441 ksVe~ydp~~~~W~~---L~~-~R~~~~vavl~gklYn~lYviGG~---g--------~~~dp~~n-------M~~~R~~ 498 (583)
+.+++|||.+++|.. |+. +|..+++++.+++|| ++||. + +.+||..+ |+++|..
T Consensus 189 ~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iY----v~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~ 264 (376)
T PRK14131 189 KEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLW----LINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPGG 264 (376)
T ss_pred ceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEE----EEeeeECCCcCChhheEEEecCCCcceeecCCCCCCCcC
Confidence 568999999999998 665 677889999997666 99995 2 12366544 8877642
Q ss_pred --------eEEEEEccc-------cCCC--------C------c---cccccccceeeecC---CceeecCCCCcceecc
Q 007950 499 --------HCFGLFLGM-------QEKG--------S------V---SFAVDYEFAARIKP---TEEYVSKYKGNYTFTG 543 (583)
Q Consensus 499 --------~~~~vl~G~-------~~~~--------~------l---ssvVd~~~aErYdP---~W~~vapm~~~~~~~g 543 (583)
+..++++|+ +..+ . + .+ | |+||| +|+.+++||.++..++
T Consensus 265 ~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----e~yd~~~~~W~~~~~lp~~r~~~~ 338 (376)
T PRK14131 265 SSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWS-D-----EIYALVNGKWQKVGELPQGLAYGV 338 (376)
T ss_pred CcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceee-h-----heEEecCCcccccCcCCCCccceE
Confidence 223444444 2111 0 1 12 3 99999 9999999999987775
Q ss_pred eeeecccccccccccceecCCceEEECCe
Q 007950 544 GKAVGYRNLFGIPWTAFMADDSIYFINGN 572 (583)
Q Consensus 544 ~~avg~~~~~~~~~~~~~~~~~~~~i~~~ 572 (583)
..+++ ++||.+||.
T Consensus 339 av~~~---------------~~iyv~GG~ 352 (376)
T PRK14131 339 SVSWN---------------NGVLLIGGE 352 (376)
T ss_pred EEEeC---------------CEEEEEcCC
Confidence 44444 788888885
No 22
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=98.61 E-value=2.4e-07 Score=97.30 Aligned_cols=95 Identities=11% Similarity=0.062 Sum_probs=69.9
Q ss_pred eeeeEeec------ceeEEEecCCCCeE----Ee---ecccccceeEEeeCCeeeceeEEeccc--------ccccCccC
Q 007950 432 ERAYKYRP------VKVVEFELPRQQCV----VY---LDLKREECAHLFPAGRIYSQAFHLGGQ--------GFFLSAHC 490 (583)
Q Consensus 432 ~~lyv~~p------~ksVe~ydp~~~~W----~~---L~~~R~~~~vavl~gklYn~lYviGG~--------g~~~dp~~ 490 (583)
+.||++++ .+.+++||+.+++| .. ||.+|..+++++++|+|| ++||. -+.|||.+
T Consensus 73 ~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iY----v~GG~~~~~~~~~v~~yd~~~ 148 (323)
T TIGR03548 73 NGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLY----VGGGNRNGKPSNKSYLFNLET 148 (323)
T ss_pred CEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEE----EEeCcCCCccCceEEEEcCCC
Confidence 45777554 36889999999988 33 788889999999997766 99996 13468877
Q ss_pred C-------CC-CCCCceEEEEEccc----cCCC--CccccccccceeeecC---CceeecCCC
Q 007950 491 N-------MD-QQSSFHCFGLFLGM----QEKG--SVSFAVDYEFAARIKP---TEEYVSKYK 536 (583)
Q Consensus 491 n-------M~-~~R~~~~~~vl~G~----~~~~--~lssvVd~~~aErYdP---~W~~vapm~ 536 (583)
+ |+ .+|..|++++++|+ .+.. ....+ ++||| +|+.+++|+
T Consensus 149 ~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~------~~yd~~~~~W~~~~~~~ 205 (323)
T TIGR03548 149 QEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDG------YKYSPKKNQWQKVADPT 205 (323)
T ss_pred CCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccce------EEEecCCCeeEECCCCC
Confidence 6 66 58999888877766 1211 12232 89999 899999884
No 23
>PLN02193 nitrile-specifier protein
Probab=98.61 E-value=2.2e-07 Score=102.97 Aligned_cols=117 Identities=14% Similarity=0.069 Sum_probs=86.0
Q ss_pred eeeeEeec------ceeEEEecCCCCeEEe---e---cccccceeEEeeCCeeeceeEEecccc--------cccCccCC
Q 007950 432 ERAYKYRP------VKVVEFELPRQQCVVY---L---DLKREECAHLFPAGRIYSQAFHLGGQG--------FFLSAHCN 491 (583)
Q Consensus 432 ~~lyv~~p------~ksVe~ydp~~~~W~~---L---~~~R~~~~vavl~gklYn~lYviGG~g--------~~~dp~~n 491 (583)
+.||++++ .+.+++||+.+++|.. + |.+|..|++++.+++|| ++||.. ..|||..+
T Consensus 229 ~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iY----v~GG~~~~~~~~~~~~yd~~t~ 304 (470)
T PLN02193 229 STLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVY----VFGGVSATARLKTLDSYNIVDK 304 (470)
T ss_pred CEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEE----EECCCCCCCCcceEEEEECCCC
Confidence 45777654 3678999999999997 4 56799999999997666 999972 23566554
Q ss_pred ----------CCCCCCceEEEEEcccc----C-CC-CccccccccceeeecC---CceeecCC---CCcceecceeeecc
Q 007950 492 ----------MDQQSSFHCFGLFLGMQ----E-KG-SVSFAVDYEFAARIKP---TEEYVSKY---KGNYTFTGGKAVGY 549 (583)
Q Consensus 492 ----------M~~~R~~~~~~vl~G~~----~-~~-~lssvVd~~~aErYdP---~W~~vapm---~~~~~~~g~~avg~ 549 (583)
|+.+|..|++++++|+. + .+ .++. | ++||| +|+.++++ |.++..++.++++
T Consensus 305 ~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~d-v-----~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~- 377 (470)
T PLN02193 305 KWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDD-V-----HYYDPVQDKWTQVETFGVRPSERSVFASAAVG- 377 (470)
T ss_pred EEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCccCc-e-----EEEECCCCEEEEeccCCCCCCCcceeEEEEEC-
Confidence 66789999998877661 1 11 2344 3 99999 89999876 6677766666655
Q ss_pred cccccccccceecCCceEEECCee
Q 007950 550 RNLFGIPWTAFMADDSIYFINGNL 573 (583)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~i~~~~ 573 (583)
++||.+||..
T Consensus 378 --------------~~iyv~GG~~ 387 (470)
T PLN02193 378 --------------KHIVIFGGEI 387 (470)
T ss_pred --------------CEEEEECCcc
Confidence 6788888864
No 24
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=98.59 E-value=2.2e-07 Score=97.60 Aligned_cols=119 Identities=13% Similarity=0.016 Sum_probs=80.9
Q ss_pred eeeeEeec------ceeEEEecCCCCeEEe---ecc-cccceeEEeeCCeeeceeEEecccc-------cccCccCC---
Q 007950 432 ERAYKYRP------VKVVEFELPRQQCVVY---LDL-KREECAHLFPAGRIYSQAFHLGGQG-------FFLSAHCN--- 491 (583)
Q Consensus 432 ~~lyv~~p------~ksVe~ydp~~~~W~~---L~~-~R~~~~vavl~gklYn~lYviGG~g-------~~~dp~~n--- 491 (583)
+.||+.++ .+.+++|||.+++|.. |+. +|..+++++++|+|| ++||.. +.|||.++
T Consensus 124 ~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iY----v~GG~~~~~~~~~~~yd~~~~~W~ 199 (323)
T TIGR03548 124 GTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELY----VFGGGSNIAYTDGYKYSPKKNQWQ 199 (323)
T ss_pred CEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEE----EEcCCCCccccceEEEecCCCeeE
Confidence 46777654 4689999999999998 553 688888889997766 999961 35788876
Q ss_pred ----CC---CCCC--ceE-EE-------EEccccCCC-------------------------------Ccccccccccee
Q 007950 492 ----MD---QQSS--FHC-FG-------LFLGMQEKG-------------------------------SVSFAVDYEFAA 523 (583)
Q Consensus 492 ----M~---~~R~--~~~-~~-------vl~G~~~~~-------------------------------~lssvVd~~~aE 523 (583)
|. .+|. .++ ++ ++||.++.. ..+..| |
T Consensus 200 ~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-----~ 274 (323)
T TIGR03548 200 KVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKI-----L 274 (323)
T ss_pred ECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceE-----E
Confidence 42 3433 222 22 334433211 011223 9
Q ss_pred eecC---CceeecCCC-CcceecceeeecccccccccccceecCCceEEECCeee
Q 007950 524 RIKP---TEEYVSKYK-GNYTFTGGKAVGYRNLFGIPWTAFMADDSIYFINGNLH 574 (583)
Q Consensus 524 rYdP---~W~~vapm~-~~~~~~g~~avg~~~~~~~~~~~~~~~~~~~~i~~~~~ 574 (583)
+||| +|+.+++|| .++..++..+++ ++||.+||..+
T Consensus 275 ~yd~~~~~W~~~~~~p~~~r~~~~~~~~~---------------~~iyv~GG~~~ 314 (323)
T TIGR03548 275 IYNVRTGKWKSIGNSPFFARCGAALLLTG---------------NNIFSINGELK 314 (323)
T ss_pred EEECCCCeeeEcccccccccCchheEEEC---------------CEEEEEecccc
Confidence 9999 899999997 466666665665 78999999765
No 25
>PLN02153 epithiospecifier protein
Probab=98.56 E-value=3.8e-07 Score=96.55 Aligned_cols=107 Identities=11% Similarity=0.074 Sum_probs=72.6
Q ss_pred eeeeEeecc--------eeEEEecCCCCeEEeec----cccc---ceeEEeeCCeeeceeEEeccc---c-----cccCc
Q 007950 432 ERAYKYRPV--------KVVEFELPRQQCVVYLD----LKRE---ECAHLFPAGRIYSQAFHLGGQ---G-----FFLSA 488 (583)
Q Consensus 432 ~~lyv~~p~--------ksVe~ydp~~~~W~~L~----~~R~---~~~vavl~gklYn~lYviGG~---g-----~~~dp 488 (583)
+.||++|+. +.+.+||+.+++|..++ .+|. +|++++++++|| ++||. + ++|||
T Consensus 33 ~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iy----v~GG~~~~~~~~~v~~yd~ 108 (341)
T PLN02153 33 DKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLY----IFGGRDEKREFSDFYSYDT 108 (341)
T ss_pred CEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEE----EECCCCCCCccCcEEEEEC
Confidence 467775542 46889999999999832 3333 678889997666 99996 1 24687
Q ss_pred cCC-------C-----CCCCCceEEEEEccc-------cCCC------CccccccccceeeecC---CceeecCCC---C
Q 007950 489 HCN-------M-----DQQSSFHCFGLFLGM-------QEKG------SVSFAVDYEFAARIKP---TEEYVSKYK---G 537 (583)
Q Consensus 489 ~~n-------M-----~~~R~~~~~~vl~G~-------~~~~------~lssvVd~~~aErYdP---~W~~vapm~---~ 537 (583)
.++ | +.+|..|++++++++ +..+ .+.. | ++||| +|+.++++. .
T Consensus 109 ~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~-v-----~~yd~~~~~W~~l~~~~~~~~ 182 (341)
T PLN02153 109 VKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRT-I-----EAYNIADGKWVQLPDPGENFE 182 (341)
T ss_pred CCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccce-E-----EEEECCCCeEeeCCCCCCCCC
Confidence 765 5 678999998876655 2221 1233 3 99999 899999875 4
Q ss_pred cceecceeeec
Q 007950 538 NYTFTGGKAVG 548 (583)
Q Consensus 538 ~~~~~g~~avg 548 (583)
++..++.++++
T Consensus 183 ~r~~~~~~~~~ 193 (341)
T PLN02153 183 KRGGAGFAVVQ 193 (341)
T ss_pred CCCcceEEEEC
Confidence 45555444433
No 26
>PLN02193 nitrile-specifier protein
Probab=98.42 E-value=1.4e-06 Score=96.62 Aligned_cols=106 Identities=11% Similarity=0.023 Sum_probs=73.1
Q ss_pred eeeeEeecc--------eeEEEecCCCCeEEeec----cc---ccceeEEeeCCeeeceeEEecccc--------cccCc
Q 007950 432 ERAYKYRPV--------KVVEFELPRQQCVVYLD----LK---REECAHLFPAGRIYSQAFHLGGQG--------FFLSA 488 (583)
Q Consensus 432 ~~lyv~~p~--------ksVe~ydp~~~~W~~L~----~~---R~~~~vavl~gklYn~lYviGG~g--------~~~dp 488 (583)
+.||++++. +.+++||+.+++|..++ .+ |..+++++++++|| ++||+. ++|||
T Consensus 176 ~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lY----vfGG~~~~~~~ndv~~yD~ 251 (470)
T PLN02193 176 NKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLY----VFGGRDASRQYNGFYSFDT 251 (470)
T ss_pred CEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEE----EECCCCCCCCCccEEEEEC
Confidence 457775542 35889999999999732 22 45788889996665 999971 24587
Q ss_pred cCC-------C---CCCCCceEEEEEccc-------cCCCCccccccccceeeecC---CceeecC---CCCcceeccee
Q 007950 489 HCN-------M---DQQSSFHCFGLFLGM-------QEKGSVSFAVDYEFAARIKP---TEEYVSK---YKGNYTFTGGK 545 (583)
Q Consensus 489 ~~n-------M---~~~R~~~~~~vl~G~-------~~~~~lssvVd~~~aErYdP---~W~~vap---m~~~~~~~g~~ 545 (583)
.++ | +.+|..|++++++++ ++...+..+ ++||| +|+.+++ ++.++..++.+
T Consensus 252 ~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~------~~yd~~t~~W~~~~~~~~~~~~R~~~~~~ 325 (470)
T PLN02193 252 TTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTL------DSYNIVDKKWFHCSTPGDSFSIRGGAGLE 325 (470)
T ss_pred CCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceE------EEEECCCCEEEeCCCCCCCCCCCCCcEEE
Confidence 765 4 788999999876555 333445554 99999 8999875 45555544433
Q ss_pred ee
Q 007950 546 AV 547 (583)
Q Consensus 546 av 547 (583)
++
T Consensus 326 ~~ 327 (470)
T PLN02193 326 VV 327 (470)
T ss_pred EE
Confidence 33
No 27
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=98.33 E-value=2.8e-06 Score=91.44 Aligned_cols=116 Identities=16% Similarity=0.062 Sum_probs=75.5
Q ss_pred eeeeEeecc--eeEEEecCC--CCeEEe---ec-ccccceeEEeeCCeeeceeEEeccccc--------------ccCcc
Q 007950 432 ERAYKYRPV--KVVEFELPR--QQCVVY---LD-LKREECAHLFPAGRIYSQAFHLGGQGF--------------FLSAH 489 (583)
Q Consensus 432 ~~lyv~~p~--ksVe~ydp~--~~~W~~---L~-~~R~~~~vavl~gklYn~lYviGG~g~--------------~~dp~ 489 (583)
+.+|+.++. +.+..||.. +++|.. |+ .+|..+++++++++|| ++||+.. +|||.
T Consensus 39 ~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IY----V~GG~~~~~~~~~~~~~~~v~~YD~~ 114 (376)
T PRK14131 39 NTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLY----VFGGIGKTNSEGSPQVFDDVYKYDPK 114 (376)
T ss_pred CEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEE----EEcCCCCCCCCCceeEcccEEEEeCC
Confidence 467775543 456778775 578997 55 3688899999996655 9999621 35887
Q ss_pred CC--------CCCCCCceEEEE-Eccc----cCCCC-------------------------------------ccccccc
Q 007950 490 CN--------MDQQSSFHCFGL-FLGM----QEKGS-------------------------------------VSFAVDY 519 (583)
Q Consensus 490 ~n--------M~~~R~~~~~~v-l~G~----~~~~~-------------------------------------lssvVd~ 519 (583)
.| ++.+|..|+.++ .+|+ .|... .+. |
T Consensus 115 ~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-v-- 191 (376)
T PRK14131 115 TNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKE-V-- 191 (376)
T ss_pred CCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCce-E--
Confidence 76 234445566554 4555 11110 123 3
Q ss_pred cceeeecC---CceeecCCCC-cceecceeeecccccccccccceecCCceEEECCe
Q 007950 520 EFAARIKP---TEEYVSKYKG-NYTFTGGKAVGYRNLFGIPWTAFMADDSIYFINGN 572 (583)
Q Consensus 520 ~~aErYdP---~W~~vapm~~-~~~~~g~~avg~~~~~~~~~~~~~~~~~~~~i~~~ 572 (583)
++||| +|+.+++||. ++..++..+++ ++||.|||.
T Consensus 192 ---~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~---------------~~iYv~GG~ 230 (376)
T PRK14131 192 ---LSYDPSTNQWKNAGESPFLGTAGSAVVIKG---------------NKLWLINGE 230 (376)
T ss_pred ---EEEECCCCeeeECCcCCCCCCCcceEEEEC---------------CEEEEEeee
Confidence 99999 8999999996 56555544444 677777774
No 28
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.02 E-value=5.7e-06 Score=93.61 Aligned_cols=99 Identities=21% Similarity=0.274 Sum_probs=68.9
Q ss_pred CCCCCCccEEEEEe--eEEcchhhhcccCcccccccCCccccccchhhhHHHHHHHHHHHHHHhhcCCCCCCcceE----
Q 007950 139 PAWSMDLSTVLRVK--TVHISSPILAAKSPFFYKVNVPSLVYAFCIPWFLLLWLVILCIFLQLFSNGMRESEQRYV---- 212 (583)
Q Consensus 139 ~~~~~~~Dv~l~v~--~~~aHr~iLaa~S~yF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~es~~~~v---- 212 (583)
.......||+|.|+ -|+|||.||++||++|++ +|......+....|
T Consensus 553 ~~~ds~hDVtf~vg~~~F~aHKfIl~~rs~flrk----------------------------L~l~~~~~s~~~dIY~~~ 604 (1267)
T KOG0783|consen 553 NYKDSFHDVTFYVGTSMFHAHKFILCARSSFLRK----------------------------LLLQKKKSSVSNDIYIEE 604 (1267)
T ss_pred ccccccceEEEEecCeecccceEEEEeccHHHHH----------------------------HHHhhccccccceeeeec
Confidence 33445789999996 499999999999999999 55543333322222
Q ss_pred ------EEecCCCCHHHHHHHHhhhccCccccC--C-----------cchHHH-------HHHHhchhhhcchhhhhhh
Q 007950 213 ------TLRIHASEEAALMELLNFMYSSTLSTT--T-----------PTALLD-------VLMAADKFEVASCMRYCSR 265 (583)
Q Consensus 213 ------~l~~~~~~~~~f~~lL~fiYtg~l~i~--~-----------~~~v~~-------lL~aAd~~~v~~l~~~C~~ 265 (583)
+|..+++.|..|+.+|+||||+.+--. . ++|... ++..+.+|++.+|...-..
T Consensus 605 ~~~~~~~~~ve~i~p~mfe~lL~~iYtdt~~~P~heDdidci~fs~~k~N~~qrtrtCeMl~~~lekf~l~el~~~~~s 683 (1267)
T KOG0783|consen 605 ITQSHSTIRVEDIPPLMFEILLHYIYTDTLLSPWHEDDIDCIRFSPLKENLSQRTRTCEMLANLLEKFHLAELLPFSVS 683 (1267)
T ss_pred ccccCceeeeccCCHHHHHHHHHHHhcccccCCccccchhhhhccccccChhhcccHHHHHHHHHhhhhHHhhhhhhhh
Confidence 333669999999999999999954211 0 133333 7777888888777654433
No 29
>PF13964 Kelch_6: Kelch motif
Probab=97.55 E-value=0.00012 Score=55.73 Aligned_cols=47 Identities=23% Similarity=0.242 Sum_probs=35.8
Q ss_pred cccceeEEeeCCeeeceeEEecccccccCccCCCCCCCCceEEEEEccccCCCCccccccccceeeecC---CceeecCC
Q 007950 459 KREECAHLFPAGRIYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFAVDYEFAARIKP---TEEYVSKY 535 (583)
Q Consensus 459 ~R~~~~vavl~gklYn~lYviGG~g~~~dp~~nM~~~R~~~~~~vl~G~~~~~~lssvVd~~~aErYdP---~W~~vapm 535 (583)
+|..|++++++|+|| ++||... .....+. | |+||| +|+.+++|
T Consensus 1 pR~~~s~v~~~~~iy----v~GG~~~------------------------~~~~~~~-v-----~~yd~~t~~W~~~~~m 46 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIY----VFGGYDN------------------------SGKYSND-V-----ERYDPETNTWEQLPPM 46 (50)
T ss_pred CCccCEEEEECCEEE----EECCCCC------------------------CCCcccc-E-----EEEcCCCCcEEECCCC
Confidence 478899999997766 9998731 0122344 4 99999 99999999
Q ss_pred CCcc
Q 007950 536 KGNY 539 (583)
Q Consensus 536 ~~~~ 539 (583)
|.++
T Consensus 47 p~pR 50 (50)
T PF13964_consen 47 PTPR 50 (50)
T ss_pred CCCC
Confidence 9875
No 30
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=97.55 E-value=3.8e-05 Score=80.71 Aligned_cols=139 Identities=16% Similarity=0.100 Sum_probs=100.7
Q ss_pred EEEEEe-eEEcchhhhcccCcccccccCCccccccchhhhHHHHHHHHHHHHHHhhcCCCCCC-cce-EEEecCCCCHHH
Q 007950 147 TVLRVK-TVHISSPILAAKSPFFYKVNVPSLVYAFCIPWFLLLWLVILCIFLQLFSNGMRESE-QRY-VTLRIHASEEAA 223 (583)
Q Consensus 147 v~l~v~-~~~aHr~iLaa~S~yF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~es~-~~~-v~l~~~~~~~~~ 223 (583)
+.+-++ +.|||++++ .|..||+. ||.|++.|+. ++. ..+..+.....+
T Consensus 295 iql~~~~RyP~hla~i-~R~eyfk~----------------------------mf~g~f~e~s~n~~~p~lslp~~~~~v 345 (516)
T KOG0511|consen 295 IQLPEEDRYPAHLARI-LRVEYFKS----------------------------MFVGDFIESSVNDTRPGLSLPSLADVV 345 (516)
T ss_pred ccccccccccHHHHHH-HHHHHHHH----------------------------HhccchhhhcCCccccccccchHHHHH
Confidence 344443 699999999 46789999 9999999965 322 223234777889
Q ss_pred HHHHHhhhccCccccCCcchHHHHHHHhchhhhcc---hhhhhhhccccC--CCCchhhhhhcccchhhhhhhccHHHHH
Q 007950 224 LMELLNFMYSSTLSTTTPTALLDVLMAADKFEVAS---CMRYCSRLLRNL--PMTCESALLYLDLPSSVLMADAVQPLTD 298 (583)
Q Consensus 224 f~~lL~fiYtg~l~i~~~~~v~~lL~aAd~~~v~~---l~~~C~~~L~~~--~l~~~n~~~~l~~a~~~~~~~~~~~L~~ 298 (583)
.+..++|+|+++..+.. +-+.+++..|+++.++. |+.+..-.+++- .++.-++..++..+-.. ....|.+
T Consensus 346 veI~lr~lY~d~tdi~~-~~A~dvll~ad~lal~~dr~Lkt~as~~itq~~e~id~y~V~dIl~~~wd~----~~~rlEq 420 (516)
T KOG0511|consen 346 VEIDLRNLYCDQTDIIF-DVASDVLLFADKLALADDRLLKTAASAEITQWLELIDMYGVLDILEYCWDL----VACRLEQ 420 (516)
T ss_pred HHHHHHHhhcccccchH-HHHhhHHHHhhHhhhhhhhhhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHh----hhHHHHH
Confidence 99999999999999988 89999999999997762 444443333320 23445566666655433 5678888
Q ss_pred HHHHHHHHhcccccccchhhhC
Q 007950 299 TAKQFLAARYKDISKFQEEVLN 320 (583)
Q Consensus 299 ~~~~fi~~~f~~v~~~~~~f~~ 320 (583)
.+..|++.|+..+.. .+++..
T Consensus 421 fa~~~~a~hl~~l~~-dPe~~~ 441 (516)
T KOG0511|consen 421 FAETHEARHLLLLLP-DPEGDS 441 (516)
T ss_pred HHHHHHHHHHHHhcC-CchhhH
Confidence 888999999888887 776654
No 31
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.36 E-value=7.4e-05 Score=77.56 Aligned_cols=126 Identities=16% Similarity=0.148 Sum_probs=101.5
Q ss_pred eeEEcchhhhcccCcccccccCCccccccchhhhHHHHHHHHHHHHHHhhcCCCCCCcceEEEecCCCCHHHHHHHHhhh
Q 007950 152 KTVHISSPILAAKSPFFYKVNVPSLVYAFCIPWFLLLWLVILCIFLQLFSNGMRESEQRYVTLRIHASEEAALMELLNFM 231 (583)
Q Consensus 152 ~~~~aHr~iLaa~S~yF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~es~~~~v~l~~~~~~~~~f~~lL~fi 231 (583)
+.+.+|+++++|+|++|++ |+.....+..+..+++. +.+++.++++..|.
T Consensus 110 g~~~~~~~~~~a~~~V~~~----------------------------~~~~d~~~~~~~~~~~~--d~~~~~~~~~~~F~ 159 (297)
T KOG1987|consen 110 GFLVAHKLVLVARSEVFEA----------------------------MGKSDVFKESSKLITLL--EEKPEVLEALNGFQ 159 (297)
T ss_pred cEEEcCceEEEeeecceee----------------------------ecccccchhcccccccc--ccchhhHhhhceEE
Confidence 4599999999999999999 88876665555666666 89999999999999
Q ss_pred ccCccccCCcchHH---HHHHHhchhhhcchhhhhhhccccCCCCchhhhhhcccchhhhhhhccHHHHHHHHHHHHH--
Q 007950 232 YSSTLSTTTPTALL---DVLMAADKFEVASCMRYCSRLLRNLPMTCESALLYLDLPSSVLMADAVQPLTDTAKQFLAA-- 306 (583)
Q Consensus 232 Ytg~l~i~~~~~v~---~lL~aAd~~~v~~l~~~C~~~L~~~~l~~~n~~~~l~~a~~~~~~~~~~~L~~~~~~fi~~-- 306 (583)
|+..-.... +... .++.+|++++...++..|...+.. .+...+++.++..++.+ ....+..++..++..
T Consensus 160 ~~~s~~~~~-~~~~~~~~~~a~~f~~~~~~lk~~~~~~l~~-~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~ 233 (297)
T KOG1987|consen 160 VLPSQVSSV-ERIFEKHPDLAAAFKYKNRHLKLACMPVLLS-LIETLNVSQSLQEASNY----DLKEAKSALTYVIAAGF 233 (297)
T ss_pred EeccchHHH-HHhhcCChhhhhccccccHHHHHHHHHHHHH-HHHhhhhcccHHHhchh----HHHHHHHHHHHHHhccc
Confidence 996554443 4443 888899999999999999999999 68888888888888766 556677777777776
Q ss_pred hcccccc
Q 007950 307 RYKDISK 313 (583)
Q Consensus 307 ~f~~v~~ 313 (583)
+++.+.+
T Consensus 234 ~ld~l~~ 240 (297)
T KOG1987|consen 234 KLDWLEK 240 (297)
T ss_pred hHhHHHH
Confidence 5556554
No 32
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=97.32 E-value=0.00016 Score=54.01 Aligned_cols=44 Identities=20% Similarity=0.237 Sum_probs=33.3
Q ss_pred cccceeEEeeCCeeeceeEEecccccccCccCCCCCCCCceEEEEEccccCCCCccccccccceeeecC---CceeecCC
Q 007950 459 KREECAHLFPAGRIYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFAVDYEFAARIKP---TEEYVSKY 535 (583)
Q Consensus 459 ~R~~~~vavl~gklYn~lYviGG~g~~~dp~~nM~~~R~~~~~~vl~G~~~~~~lssvVd~~~aErYdP---~W~~vapm 535 (583)
+|.+|++++++++|| ++||+.. ....++++ |+||| +|+.+++|
T Consensus 1 pR~~~~~~~~~~~iy----v~GG~~~------------------------~~~~~~~v------~~yd~~~~~W~~~~~m 46 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIY----VIGGYDG------------------------NNQPTNSV------EVYDPETNTWEELPPM 46 (47)
T ss_dssp -BBSEEEEEETTEEE----EEEEBES------------------------TSSBEEEE------EEEETTTTEEEEEEEE
T ss_pred CCccCEEEEECCEEE----EEeeecc------------------------cCceeeeE------EEEeCCCCEEEEcCCC
Confidence 588999999996666 9998731 12234554 99999 99999999
Q ss_pred C
Q 007950 536 K 536 (583)
Q Consensus 536 ~ 536 (583)
|
T Consensus 47 p 47 (47)
T PF01344_consen 47 P 47 (47)
T ss_dssp S
T ss_pred C
Confidence 6
No 33
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=97.18 E-value=0.00021 Score=72.47 Aligned_cols=69 Identities=16% Similarity=0.278 Sum_probs=48.0
Q ss_pred CCccEEEEEeeEEcchhhhcccCcccccccCCccccccchhhhHHHHHHHHHHHHHHhhcCCCCCCcceEEEecCCCCHH
Q 007950 143 MDLSTVLRVKTVHISSPILAAKSPFFYKVNVPSLVYAFCIPWFLLLWLVILCIFLQLFSNGMRESEQRYVTLRIHASEEA 222 (583)
Q Consensus 143 ~~~Dv~l~v~~~~aHr~iLaa~S~yF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~es~~~~v~l~~~~~~~~ 222 (583)
.+.|++|.-..|+|||++||+|||+|+. +.+..-.........+..-+++.+
T Consensus 131 ~dldiiFkeTcfpahRA~laaRCpffK~----------------------------l~nsd~e~~ae~i~dik~ag~dm~ 182 (401)
T KOG2838|consen 131 GDLDIIFKETCFPAHRAFLAARCPFFKI----------------------------LANSDEEPEAEDICDIKFAGFDMD 182 (401)
T ss_pred ccceeeeeeccchHHHHHHHhhCcchhh----------------------------hccCCCCcchhhhhhhhhhccChH
Confidence 3456666556799999999999999998 555432111111122222378999
Q ss_pred HHHHHHhhhccCccccC
Q 007950 223 ALMELLNFMYSSTLSTT 239 (583)
Q Consensus 223 ~f~~lL~fiYtg~l~i~ 239 (583)
+|.++|+|+|||+.-..
T Consensus 183 ~feafLh~l~tgEfgmE 199 (401)
T KOG2838|consen 183 AFEAFLHSLITGEFGME 199 (401)
T ss_pred HHHHHHHHHHhcccchh
Confidence 99999999999987643
No 34
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=96.96 E-value=0.0032 Score=64.11 Aligned_cols=39 Identities=13% Similarity=0.066 Sum_probs=33.7
Q ss_pred ceeEEEecCCCCeEEe------ecccccceeEEeeCCeeeceeEEeccc
Q 007950 440 VKVVEFELPRQQCVVY------LDLKREECAHLFPAGRIYSQAFHLGGQ 482 (583)
Q Consensus 440 ~ksVe~ydp~~~~W~~------L~~~R~~~~vavl~gklYn~lYviGG~ 482 (583)
-+...+|||.++.|.. +|..|.+|+++|++ |..||.||+
T Consensus 104 CN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~g----n~MyiFGGy 148 (392)
T KOG4693|consen 104 CNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWG----NQMYIFGGY 148 (392)
T ss_pred cceeeeeccccccccccceeeecCCccCCceeeEEC----cEEEEecCh
Confidence 3577899999999986 88899999999999 555699996
No 35
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=96.93 E-value=0.00027 Score=71.64 Aligned_cols=103 Identities=19% Similarity=0.292 Sum_probs=68.3
Q ss_pred eEEcchhhhcccCcccccccCCccccccchhhhHHHHHHHHHHHHHHhhcCCCC-----CCcceEEEecCCCCHHHHH-H
Q 007950 153 TVHISSPILAAKSPFFYKVNVPSLVYAFCIPWFLLLWLVILCIFLQLFSNGMRE-----SEQRYVTLRIHASEEAALM-E 226 (583)
Q Consensus 153 ~~~aHr~iLaa~S~yF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~e-----s~~~~v~l~~~~~~~~~f~-~ 226 (583)
++.||++|.||||++||. +|++ -.+.+-.- +....|.+. +-+=|.+|. .
T Consensus 262 eikahkai~aaRS~ffRn--------------LL~R----------kiregeE~sdrtlr~PkRIifd-E~I~PkafA~i 316 (401)
T KOG2838|consen 262 EIKAHKAIAAARSKFFRN--------------LLLR----------KIREGEEGSDRTLRRPKRIIFD-ELIFPKAFAPI 316 (401)
T ss_pred HHHHHHHHHHhhhHHHHH--------------HHHH----------HhhcccccccccccCCceeech-hhhcchhhhhh
Confidence 389999999999999999 1111 11221111 112345554 234455554 5
Q ss_pred HHhhhccCccccCC---------------------------cchHHHHHHHhchhhhcchhhhhhhccccCCCCchhhhh
Q 007950 227 LLNFMYSSTLSTTT---------------------------PTALLDVLMAADKFEVASCMRYCSRLLRNLPMTCESALL 279 (583)
Q Consensus 227 lL~fiYtg~l~i~~---------------------------~~~v~~lL~aAd~~~v~~l~~~C~~~L~~~~l~~~n~~~ 279 (583)
+|++|||+.+.++. .+.+++|...|-+|+++-|.+.|+..++. ....++...
T Consensus 317 ~lhclYTD~lDlSl~hkce~SigSLSeakAitnaGkpn~~qaaeAleL~~IAlFfEfemLaQa~e~Vir~-acaadlsn~ 395 (401)
T KOG2838|consen 317 FLHCLYTDRLDLSLAHKCEDSIGSLSEAKAITNAGKPNDLQAAEALELIEIALFFEFEMLAQACEDVIRK-ACAADLSNG 395 (401)
T ss_pred hhhhheecccchhhcccCCcccccHHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhcccc
Confidence 78999999886421 13467888999999999999999998887 666666555
Q ss_pred hc
Q 007950 280 YL 281 (583)
Q Consensus 280 ~l 281 (583)
++
T Consensus 396 cL 397 (401)
T KOG2838|consen 396 CL 397 (401)
T ss_pred cc
Confidence 44
No 36
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=96.83 E-value=0.0026 Score=54.79 Aligned_cols=86 Identities=16% Similarity=0.269 Sum_probs=63.5
Q ss_pred EEEEEe--eEEcchhhhc-ccCcccccccCCccccccchhhhHHHHHHHHHHHHHHhhcC---CCCCCcceEEEecCCCC
Q 007950 147 TVLRVK--TVHISSPILA-AKSPFFYKVNVPSLVYAFCIPWFLLLWLVILCIFLQLFSNG---MRESEQRYVTLRIHASE 220 (583)
Q Consensus 147 v~l~v~--~~~aHr~iLa-a~S~yF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~---~~es~~~~v~l~~~~~~ 220 (583)
|.|.|+ .|.+-+..|. ....+|.+ |+.+. .....+..+-| +-+
T Consensus 1 V~lNVGG~~f~~~~~tL~~~~~s~l~~----------------------------~~~~~~~~~~~~~~~~~fi---DRd 49 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTRYPDSLLAR----------------------------LFSGERSDDYDDDDGEYFI---DRD 49 (94)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTS----------------------------HHHTGHGGGEETTTTEEEE---SS-
T ss_pred CEEEECCEEEEEcHHHHhhCCCChhhh----------------------------HHhhccccccCCccceEEe---ccC
Confidence 567774 5888888887 55668888 88754 33345567776 789
Q ss_pred HHHHHHHHhhhcc-CccccCCcchHHHHHHHhchhhhcch-hhhh
Q 007950 221 EAALMELLNFMYS-STLSTTTPTALLDVLMAADKFEVASC-MRYC 263 (583)
Q Consensus 221 ~~~f~~lL~fiYt-g~l~i~~~~~v~~lL~aAd~~~v~~l-~~~C 263 (583)
|..|+.+|+|+.+ +.+.......+..++.-|.+|+++.+ ++.|
T Consensus 50 p~~F~~IL~ylr~~~~l~~~~~~~~~~l~~Ea~fy~l~~l~i~~c 94 (94)
T PF02214_consen 50 PELFEYILNYLRTGGKLPIPDEICLEELLEEAEFYGLDELFIEDC 94 (94)
T ss_dssp HHHHHHHHHHHHHTSSB---TTS-HHHHHHHHHHHT-HHHHBHHC
T ss_pred hhhhhHHHHHHhhcCccCCCCchhHHHHHHHHHHcCCCccccCCC
Confidence 9999999999999 77776533788999999999999999 7777
No 37
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=96.79 E-value=0.0067 Score=67.80 Aligned_cols=106 Identities=7% Similarity=-0.051 Sum_probs=71.0
Q ss_pred eeeEeecc-------eeEEEecCCCCeEEe------ecccccceeEEeeCCeeeceeEEeccccc---------ccCccC
Q 007950 433 RAYKYRPV-------KVVEFELPRQQCVVY------LDLKREECAHLFPAGRIYSQAFHLGGQGF---------FLSAHC 490 (583)
Q Consensus 433 ~lyv~~p~-------ksVe~ydp~~~~W~~------L~~~R~~~~vavl~gklYn~lYviGG~g~---------~~dp~~ 490 (583)
.||++|+. +.+..||+.+++|.. .|.+|.+|++++.+.+ +||.||.+. .||+.+
T Consensus 124 ~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~----l~vfGG~~~~~~~~ndl~i~d~~~ 199 (482)
T KOG0379|consen 124 KLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTK----LVVFGGIGGTGDSLNDLHIYDLET 199 (482)
T ss_pred eEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCE----EEEECCccCcccceeeeeeecccc
Confidence 56666553 378899999999998 5788999999999955 559999821 235554
Q ss_pred C----------CCCCCCceEEEEEccc-------c-CCCCccccccccceeeecC---CceeecC---CCCcceecceee
Q 007950 491 N----------MDQQSSFHCFGLFLGM-------Q-EKGSVSFAVDYEFAARIKP---TEEYVSK---YKGNYTFTGGKA 546 (583)
Q Consensus 491 n----------M~~~R~~~~~~vl~G~-------~-~~~~lssvVd~~~aErYdP---~W~~vap---m~~~~~~~g~~a 546 (583)
+ -+.||..|++++.+++ + +...++.+ -.+|- +|....+ +|.++..+...+
T Consensus 200 ~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~------~~ldl~~~~W~~~~~~g~~p~~R~~h~~~~ 273 (482)
T KOG0379|consen 200 STWSELDTQGEAPSPRYGHAMVVVGNKLLVFGGGDDGDVYLNDV------HILDLSTWEWKLLPTGGDLPSPRSGHSLTV 273 (482)
T ss_pred ccceecccCCCCCCCCCCceEEEECCeEEEEeccccCCceecce------EeeecccceeeeccccCCCCCCcceeeeEE
Confidence 3 7779999999987665 3 22223332 45555 6775443 355666555443
Q ss_pred ec
Q 007950 547 VG 548 (583)
Q Consensus 547 vg 548 (583)
.|
T Consensus 274 ~~ 275 (482)
T KOG0379|consen 274 SG 275 (482)
T ss_pred EC
Confidence 33
No 38
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=96.11 E-value=0.0085 Score=45.37 Aligned_cols=46 Identities=22% Similarity=0.177 Sum_probs=32.6
Q ss_pred cccceeEEeeCCeeeceeEEecccccccCccCCCCCCCCceEEEEEccccCCCCccccccccceeeecC---CceeecCC
Q 007950 459 KREECAHLFPAGRIYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFAVDYEFAARIKP---TEEYVSKY 535 (583)
Q Consensus 459 ~R~~~~vavl~gklYn~lYviGG~g~~~dp~~nM~~~R~~~~~~vl~G~~~~~~lssvVd~~~aErYdP---~W~~vapm 535 (583)
+|..|++++++++|| ++||++. .+.....+. | +.||+ +|+.+++|
T Consensus 1 ~r~~hs~~~~~~kiy----v~GG~~~----------------------~~~~~~~~~-v-----~~~d~~t~~W~~~~~~ 48 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIY----VFGGYGT----------------------DNGGSSSND-V-----WVFDTETNQWTELSPM 48 (49)
T ss_pred CccceEEEEECCEEE----EECCccc----------------------CCCCcccce-e-----EEEECCCCEEeecCCC
Confidence 578999999997776 9998710 011122234 3 89999 89999998
Q ss_pred C
Q 007950 536 K 536 (583)
Q Consensus 536 ~ 536 (583)
+
T Consensus 49 g 49 (49)
T PF07646_consen 49 G 49 (49)
T ss_pred C
Confidence 5
No 39
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=96.05 E-value=0.026 Score=63.09 Aligned_cols=96 Identities=11% Similarity=-0.089 Sum_probs=71.4
Q ss_pred EEEecCCCCeEEe------ecccccceeEEeeCCeeeceeEEeccccc---------ccCccC----------CCCCCCC
Q 007950 443 VEFELPRQQCVVY------LDLKREECAHLFPAGRIYSQAFHLGGQGF---------FLSAHC----------NMDQQSS 497 (583)
Q Consensus 443 Ve~ydp~~~~W~~------L~~~R~~~~vavl~gklYn~lYviGG~g~---------~~dp~~----------nM~~~R~ 497 (583)
+..+|..++.|.. .|.+|.+|..++++.+ +|++||+.. .||+.+ +++.+|.
T Consensus 90 l~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~----l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~ 165 (482)
T KOG0379|consen 90 LYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDK----LYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRA 165 (482)
T ss_pred eEEeecCCcccccccccCCCCCcccceeEEEECCe----EEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCcc
Confidence 7778888889987 5678999999999955 559999831 234444 3899999
Q ss_pred ceEEEEEccc-------cCCC-CccccccccceeeecC---Cceeec---CCCCcceecceeeec
Q 007950 498 FHCFGLFLGM-------QEKG-SVSFAVDYEFAARIKP---TEEYVS---KYKGNYTFTGGKAVG 548 (583)
Q Consensus 498 ~~~~~vl~G~-------~~~~-~lssvVd~~~aErYdP---~W~~va---pm~~~~~~~g~~avg 548 (583)
.|.+++.+.+ +..+ .+..+ -.||+ +|..+. +-|.++.+|+.++++
T Consensus 166 ~Hs~~~~g~~l~vfGG~~~~~~~~ndl------~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~ 224 (482)
T KOG0379|consen 166 GHSATVVGTKLVVFGGIGGTGDSLNDL------HIYDLETSTWSELDTQGEAPSPRYGHAMVVVG 224 (482)
T ss_pred cceEEEECCEEEEECCccCcccceeee------eeeccccccceecccCCCCCCCCCCceEEEEC
Confidence 9999876544 4444 45554 89999 899874 667788888877777
No 40
>smart00612 Kelch Kelch domain.
Probab=95.89 E-value=0.009 Score=43.63 Aligned_cols=26 Identities=8% Similarity=-0.020 Sum_probs=22.8
Q ss_pred eeecC---CceeecCCCCcceecceeeec
Q 007950 523 ARIKP---TEEYVSKYKGNYTFTGGKAVG 548 (583)
Q Consensus 523 ErYdP---~W~~vapm~~~~~~~g~~avg 548 (583)
|+||| +|+.+++|+.++..++.++++
T Consensus 18 ~~yd~~~~~W~~~~~~~~~r~~~~~~~~~ 46 (47)
T smart00612 18 EVYDPETNKWTPLPSMPTPRSGHGVAVIN 46 (47)
T ss_pred EEECCCCCeEccCCCCCCccccceEEEeC
Confidence 99999 899999999999888766654
No 41
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=95.87 E-value=0.0062 Score=63.83 Aligned_cols=85 Identities=11% Similarity=0.262 Sum_probs=63.3
Q ss_pred eEEcchhhhcccCcccccccCCccccccchhhhHHHHHHHHHHHHHHhhc---CCCCCCcceEEEecCCCCHHHHHHHHh
Q 007950 153 TVHISSPILAAKSPFFYKVNVPSLVYAFCIPWFLLLWLVILCIFLQLFSN---GMRESEQRYVTLRIHASEEAALMELLN 229 (583)
Q Consensus 153 ~~~aHr~iLaa~S~yF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~---~~~es~~~~v~l~~~~~~~~~f~~lL~ 229 (583)
+|.|.+-+|-..=+||+. .+.. +-++. .+|.|.+ .-+-.+|.-|++
T Consensus 15 dF~C~~~lL~~~M~YF~~----------------------------~l~~~~~~~~~~--~~idisV-hCDv~iF~WLm~ 63 (317)
T PF11822_consen 15 DFTCPRDLLVSEMRYFAE----------------------------YLSRYINDSQRW--EEIDISV-HCDVHIFEWLMR 63 (317)
T ss_pred eeeccHHHHHHhhHHHHH----------------------------HHhhcccccCcC--CCcceEE-ecChhHHHHHHH
Confidence 699999999999999999 5543 22332 3344442 467789999999
Q ss_pred hhccCccccCCcchHHHHHHHhchhhhcchhhhhhhcccc
Q 007950 230 FMYSSTLSTTTPTALLDVLMAADKFEVASCMRYCSRLLRN 269 (583)
Q Consensus 230 fiYtg~l~i~~~~~v~~lL~aAd~~~v~~l~~~C~~~L~~ 269 (583)
|+....-.++. .||..||.-|++++|++|.+.|-.|+.+
T Consensus 64 yv~~~~p~l~~-~NvvsIliSS~FL~M~~Lve~cl~y~~~ 102 (317)
T PF11822_consen 64 YVKGEPPSLTP-SNVVSILISSEFLQMESLVEECLQYCHD 102 (317)
T ss_pred HhhcCCCcCCc-CcEEEeEehhhhhccHHHHHHHHHHHHH
Confidence 99997666776 7777777777777777777777776655
No 42
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]
Probab=95.75 E-value=0.017 Score=58.27 Aligned_cols=92 Identities=16% Similarity=0.290 Sum_probs=75.3
Q ss_pred EEEEEe--eEEcchhhhcccCcccccccCCccccccchhhhHHHHHHHHHHHHHHhhcCCC--CCCcceEEEecCCCCHH
Q 007950 147 TVLRVK--TVHISSPILAAKSPFFYKVNVPSLVYAFCIPWFLLLWLVILCIFLQLFSNGMR--ESEQRYVTLRIHASEEA 222 (583)
Q Consensus 147 v~l~v~--~~~aHr~iLaa~S~yF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~--es~~~~v~l~~~~~~~~ 222 (583)
|.+.|| .|..++.-|.-...+|++ |+...+. -.....|-| |=+|.
T Consensus 7 vkLnvGG~~F~Tsk~TLtk~dg~fk~----------------------------m~e~~i~~~~d~s~~IFI---DRSpK 55 (230)
T KOG2716|consen 7 VKLNVGGTIFKTSKSTLTKFDGFFKT----------------------------MLETDIPVEKDESGCIFI---DRSPK 55 (230)
T ss_pred EEEecCCeEEEeehhhhhhhhhHHHH----------------------------HhhcCCccccCCcCcEEe---cCChh
Confidence 345664 499999999888999999 9998763 223456777 78999
Q ss_pred HHHHHHhhhccCccccCC-cchHHHHHHHhchhhhcchhhhhhhcccc
Q 007950 223 ALMELLNFMYSSTLSTTT-PTALLDVLMAADKFEVASCMRYCSRLLRN 269 (583)
Q Consensus 223 ~f~~lL~fiYtg~l~i~~-~~~v~~lL~aAd~~~v~~l~~~C~~~L~~ 269 (583)
-|..+|+||-.|.+.+.. ...+.+|+.=|.+|.++.|.+.|...+..
T Consensus 56 HF~~ILNfmRdGdv~LPe~~kel~El~~EA~fYlL~~Lv~~C~~~i~~ 103 (230)
T KOG2716|consen 56 HFDTILNFMRDGDVDLPESEKELKELLREAEFYLLDGLVELCQSAIAR 103 (230)
T ss_pred HHHHHHHhhhcccccCccchHHHHHHHHHHHHhhHHHHHHHHHHHhhh
Confidence 999999999988887533 15788999999999999999999998876
No 43
>smart00612 Kelch Kelch domain.
Probab=95.72 E-value=0.017 Score=42.13 Aligned_cols=31 Identities=19% Similarity=0.096 Sum_probs=26.4
Q ss_pred ceeEEEecCCCCeEEe---ecccccceeEEeeCC
Q 007950 440 VKVVEFELPRQQCVVY---LDLKREECAHLFPAG 470 (583)
Q Consensus 440 ~ksVe~ydp~~~~W~~---L~~~R~~~~vavl~g 470 (583)
.+.+++|||.+++|.. |+.+|..+++++++|
T Consensus 14 ~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g 47 (47)
T smart00612 14 LKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47 (47)
T ss_pred eeeEEEECCCCCeEccCCCCCCccccceEEEeCC
Confidence 4678999999999997 888898888887763
No 44
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=94.90 E-value=0.15 Score=55.02 Aligned_cols=112 Identities=16% Similarity=0.035 Sum_probs=70.2
Q ss_pred eeEEEecCCCCeEEe-----ecccccceeEEeeCCeeeceeEEeccc-----cccc-----------------CccCCCC
Q 007950 441 KVVEFELPRQQCVVY-----LDLKREECAHLFPAGRIYSQAFHLGGQ-----GFFL-----------------SAHCNMD 493 (583)
Q Consensus 441 ksVe~ydp~~~~W~~-----L~~~R~~~~vavl~gklYn~lYviGG~-----g~~~-----------------dp~~nM~ 493 (583)
+..-.+|-.+++|.. -|.+|++|-+++.. +++++.||+ .+.| .|.-.-+
T Consensus 154 kD~W~fd~~trkweql~~~g~PS~RSGHRMvawK----~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~P 229 (521)
T KOG1230|consen 154 KDLWLFDLKTRKWEQLEFGGGPSPRSGHRMVAWK----RQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGP 229 (521)
T ss_pred hheeeeeeccchheeeccCCCCCCCccceeEEee----eeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCC
Confidence 455567889999988 46789999999999 566699996 1111 3322268
Q ss_pred CCCCceEEEEE--------cccc--------CCCCccccccccceeeecC--------CceeecCC---CCcceecceee
Q 007950 494 QQSSFHCFGLF--------LGMQ--------EKGSVSFAVDYEFAARIKP--------TEEYVSKY---KGNYTFTGGKA 546 (583)
Q Consensus 494 ~~R~~~~~~vl--------~G~~--------~~~~lssvVd~~~aErYdP--------~W~~vapm---~~~~~~~g~~a 546 (583)
.+|+.||+.+- ||+. .+|...+- + =..+| .|+.|-|. |.+++.-++ +
T Consensus 230 tpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsD--m---f~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv-~ 303 (521)
T KOG1230|consen 230 TPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSD--M---FLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSV-A 303 (521)
T ss_pred CCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeee--e---eeecCCcCCCcceeEeeccCCCCCCCCCCceeE-E
Confidence 99999999764 5551 12322220 0 12333 78888776 445554442 3
Q ss_pred ecccccccccccceecCCceEEECCeeee
Q 007950 547 VGYRNLFGIPWTAFMADDSIYFINGNLHL 575 (583)
Q Consensus 547 vg~~~~~~~~~~~~~~~~~~~~i~~~~~~ 575 (583)
|. ++++-+|.|||--|
T Consensus 304 va-------------~n~kal~FGGV~D~ 319 (521)
T KOG1230|consen 304 VA-------------KNHKALFFGGVCDL 319 (521)
T ss_pred Ee-------------cCCceEEecceecc
Confidence 33 34566888888654
No 45
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=94.62 E-value=0.043 Score=47.84 Aligned_cols=54 Identities=24% Similarity=0.332 Sum_probs=43.7
Q ss_pred HhhcCCCCCC--cceEEEecCCCCHHHHHHHHhhh-----ccCc-c-----ccCCcchHHHHHHHhchhh
Q 007950 199 LFSNGMRESE--QRYVTLRIHASEEAALMELLNFM-----YSST-L-----STTTPTALLDVLMAADKFE 255 (583)
Q Consensus 199 ~f~~~~~es~--~~~v~l~~~~~~~~~f~~lL~fi-----Ytg~-l-----~i~~~~~v~~lL~aAd~~~ 255 (583)
||+|...++. .++|+++ ++...+++.+.+|+ |++. . +|.+ +.+++||+||+++.
T Consensus 45 ml~gpg~~se~~~n~v~f~--di~shiLeKvc~Yl~Yk~rY~~~s~eiPeF~Ipp-emaleLL~aAn~Le 111 (112)
T KOG3473|consen 45 MLSGPGVFSEAEKNEVYFR--DIPSHILEKVCEYLAYKVRYTNSSTEIPEFDIPP-EMALELLMAANYLE 111 (112)
T ss_pred HHcCCccccccccceEEec--cchHHHHHHHHHHhhheeeeccccccCCCCCCCH-HHHHHHHHHhhhhc
Confidence 9998765554 5678888 99999999999998 6766 2 3455 89999999999985
No 46
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=94.58 E-value=0.18 Score=54.54 Aligned_cols=113 Identities=12% Similarity=0.053 Sum_probs=69.2
Q ss_pred eeEEEecCCCCeEEe-----ecccccceeEEeeCCeeeceeEEeccc-----c--c-cc------CccC---------CC
Q 007950 441 KVVEFELPRQQCVVY-----LDLKREECAHLFPAGRIYSQAFHLGGQ-----G--F-FL------SAHC---------NM 492 (583)
Q Consensus 441 ksVe~ydp~~~~W~~-----L~~~R~~~~vavl~gklYn~lYviGG~-----g--~-~~------dp~~---------nM 492 (583)
+....|+.++++|.. -|.+|+.|.++++-. |.+|+.||- + | .| |-.+ +-
T Consensus 98 ndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s---~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~ 174 (521)
T KOG1230|consen 98 NDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPS---NILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGG 174 (521)
T ss_pred eeeeEEeccccceeEeccCCCcCCCccceeEEecc---CeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCC
Confidence 345678999999997 567899887665542 456799994 1 1 12 2222 27
Q ss_pred CCCCCceEEEE-------EccccCC-CC---ccccccccceeeecC---CceeecCCCC----cceecceeeeccccccc
Q 007950 493 DQQSSFHCFGL-------FLGMQEK-GS---VSFAVDYEFAARIKP---TEEYVSKYKG----NYTFTGGKAVGYRNLFG 554 (583)
Q Consensus 493 ~~~R~~~~~~v-------l~G~~~~-~~---lssvVd~~~aErYdP---~W~~vapm~~----~~~~~g~~avg~~~~~~ 554 (583)
+.+|+.|-+++ +||.... +. .+-+ -+||. +|..+.| +. +++ |.+ +- .
T Consensus 175 PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDv------y~FdLdtykW~Klep-sga~PtpRS--Gcq-~~-----v 239 (521)
T KOG1230|consen 175 PSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDV------YAFDLDTYKWSKLEP-SGAGPTPRS--GCQ-FS-----V 239 (521)
T ss_pred CCCCccceeEEeeeeEEEEcceecCCCceEEeeee------EEEeccceeeeeccC-CCCCCCCCC--cce-EE-----e
Confidence 88999999885 5777322 21 2222 55666 9999988 33 222 211 11 0
Q ss_pred ccccceecCCceEEECCeeeeec
Q 007950 555 IPWTAFMADDSIYFINGNLHLRA 577 (583)
Q Consensus 555 ~~~~~~~~~~~~~~i~~~~~~~~ 577 (583)
.-+++||+-||-+..|.
T Consensus 240 ------tpqg~i~vyGGYsK~~~ 256 (521)
T KOG1230|consen 240 ------TPQGGIVVYGGYSKQRV 256 (521)
T ss_pred ------cCCCcEEEEcchhHhhh
Confidence 12568888888766553
No 47
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=94.51 E-value=0.12 Score=52.94 Aligned_cols=88 Identities=16% Similarity=0.094 Sum_probs=56.3
Q ss_pred eEEe-ec--ccccceeEEeeCCeeeceeEEeccc--cccc---CccC----C------------------------CCCC
Q 007950 452 CVVY-LD--LKREECAHLFPAGRIYSQAFHLGGQ--GFFL---SAHC----N------------------------MDQQ 495 (583)
Q Consensus 452 ~W~~-L~--~~R~~~~vavl~gklYn~lYviGG~--g~~~---dp~~----n------------------------M~~~ 495 (583)
.|+. |. .+|.+|+++.++.+| |-.||+ |+.| +|.- | .+.+
T Consensus 3 ~WTVHLeGGPrRVNHAavaVG~ri----YSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyq 78 (392)
T KOG4693|consen 3 TWTVHLEGGPRRVNHAAVAVGSRI----YSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQ 78 (392)
T ss_pred eEEEEecCCcccccceeeeecceE----EecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchh
Confidence 5777 54 457899999999554 588998 5544 1110 0 5668
Q ss_pred CCceEEEEEccc-------cCCCCccccccccceeeecC---Cceeec---CCCCcceecceeeec
Q 007950 496 SSFHCFGLFLGM-------QEKGSVSFAVDYEFAARIKP---TEEYVS---KYKGNYTFTGGKAVG 548 (583)
Q Consensus 496 R~~~~~~vl~G~-------~~~~~lssvVd~~~aErYdP---~W~~va---pm~~~~~~~g~~avg 548 (583)
|+.|.++.+.++ +......++. -.||| +|.... -+|..+-.+.+++.|
T Consensus 79 RYGHtvV~y~d~~yvWGGRND~egaCN~L-----y~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~g 139 (392)
T KOG4693|consen 79 RYGHTVVEYQDKAYVWGGRNDDEGACNLL-----YEFDPETNVWKKPEVEGFVPGARDGHSACVWG 139 (392)
T ss_pred hcCceEEEEcceEEEEcCccCccccccee-----eeeccccccccccceeeecCCccCCceeeEEC
Confidence 999999876554 4433444444 78999 898642 446666655555555
No 48
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=93.39 E-value=0.13 Score=51.40 Aligned_cols=64 Identities=19% Similarity=0.249 Sum_probs=52.4
Q ss_pred HhhcCC---CCCCcceEEEecCCCCHHHHHHHHhhhccCccccCCcchHHHHHHHhchhhhcchhhhhhh
Q 007950 199 LFSNGM---RESEQRYVTLRIHASEEAALMELLNFMYSSTLSTTTPTALLDVLMAADKFEVASCMRYCSR 265 (583)
Q Consensus 199 ~f~~~~---~es~~~~v~l~~~~~~~~~f~~lL~fiYtg~l~i~~~~~v~~lL~aAd~~~v~~l~~~C~~ 265 (583)
||.+.- +++.+..+-| +-+|..|+.+|+|+-.|++.....-+++.+|..|++||+-+|+..-++
T Consensus 39 MF~~~g~~~~~d~kGa~lI---DRsp~yFepIlNyLr~Gq~~~~s~i~~lgvLeeArff~i~sL~~hle~ 105 (302)
T KOG1665|consen 39 MFSGRGAMCQEDKKGAVLI---DRSPKYFEPILNYLRDGQIPSLSDIDCLGVLEEARFFQILSLKDHLED 105 (302)
T ss_pred HHccCCCccccccCceEEE---ccCchhhHHHHHHHhcCceeecCCccHHHHHHHhhHHhhHhHHhHHhh
Confidence 777632 3444455555 789999999999999999987665799999999999999999987776
No 49
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=92.95 E-value=0.074 Score=39.91 Aligned_cols=44 Identities=11% Similarity=0.071 Sum_probs=22.2
Q ss_pred cccceeEEee-CCeeeceeEEecccccccCccCCCCCCCCceEEEEEccccCC-CCccccccccceeeecC---Cceeec
Q 007950 459 KREECAHLFP-AGRIYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEK-GSVSFAVDYEFAARIKP---TEEYVS 533 (583)
Q Consensus 459 ~R~~~~vavl-~gklYn~lYviGG~g~~~dp~~nM~~~R~~~~~~vl~G~~~~-~~lssvVd~~~aErYdP---~W~~va 533 (583)
+|.+|+++.+ +++| |++||.. .. ..++.+ +.||+ +|+.++
T Consensus 1 pR~~h~~~~~~~~~i----~v~GG~~-------------------------~~~~~~~d~------~~~d~~~~~W~~~~ 45 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSI----YVFGGRD-------------------------SSGSPLNDL------WIFDIETNTWTRLP 45 (49)
T ss_dssp --BS-EEEEE-TTEE----EEE--EE-------------------------E-TEE---E------EEEETTTTEEEE--
T ss_pred CcceEEEEEEeCCeE----EEECCCC-------------------------CCCcccCCE------EEEECCCCEEEECC
Confidence 4788888887 4554 4888873 11 123443 89999 899999
Q ss_pred CCCC
Q 007950 534 KYKG 537 (583)
Q Consensus 534 pm~~ 537 (583)
+||.
T Consensus 46 ~~P~ 49 (49)
T PF13418_consen 46 SMPS 49 (49)
T ss_dssp SS--
T ss_pred CCCC
Confidence 8873
No 50
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=91.82 E-value=0.25 Score=43.49 Aligned_cols=72 Identities=10% Similarity=0.207 Sum_probs=51.6
Q ss_pred eEEcchhhhcccCcccccccCCccccccchhhhHHHHHHHHHHHHHHhhcCCCCCCc-ceEEEecCCCCHHHHHHHHhhh
Q 007950 153 TVHISSPILAAKSPFFYKVNVPSLVYAFCIPWFLLLWLVILCIFLQLFSNGMRESEQ-RYVTLRIHASEEAALMELLNFM 231 (583)
Q Consensus 153 ~~~aHr~iLaa~S~yF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~es~~-~~v~l~~~~~~~~~f~~lL~fi 231 (583)
.|.+.+.+. ..|..++. |+.+...+..+ ..|.++ +++..+|+.+++|+
T Consensus 13 ~f~v~~~~a-~~S~~i~~----------------------------~l~~~~~~~~~~~~Ipl~--~v~~~~L~~Vi~yc 61 (104)
T smart00512 13 VFEVEREVA-RQSKTIKA----------------------------MIEDLGVDDENNNPIPLP--NVTSKILSKVIEYC 61 (104)
T ss_pred EEEecHHHH-HHHHHHHH----------------------------HHHccCcccCCCCCccCC--CcCHHHHHHHHHHH
Confidence 588888876 57888888 87764332222 356665 99999999999999
Q ss_pred ccCccc-------------------cCCcchHHHHHHHhchhhh
Q 007950 232 YSSTLS-------------------TTTPTALLDVLMAADKFEV 256 (583)
Q Consensus 232 Ytg~l~-------------------i~~~~~v~~lL~aAd~~~v 256 (583)
+.-+-. ++. +.+.+|+.||++|++
T Consensus 62 ~~h~~~~~~~~~~~~~~~wD~~F~~~d~-~~l~dLl~AAnyL~I 104 (104)
T smart00512 62 EHHVDDPPSVADKDDIPTWDAEFLKIDQ-ETLFELILAANYLDI 104 (104)
T ss_pred HHcccCCCCccccccccHHHHHHHcCCH-HHHHHHHHHHHhhCC
Confidence 643211 333 578999999999875
No 51
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=91.50 E-value=0.4 Score=53.08 Aligned_cols=122 Identities=14% Similarity=0.174 Sum_probs=68.1
Q ss_pred eeeeEeecce-----eEEEecCCCCeEEe------------ecccccceeEEeeCCeeeceeEEecccccc-cCccCC--
Q 007950 432 ERAYKYRPVK-----VVEFELPRQQCVVY------------LDLKREECAHLFPAGRIYSQAFHLGGQGFF-LSAHCN-- 491 (583)
Q Consensus 432 ~~lyv~~p~k-----sVe~ydp~~~~W~~------------L~~~R~~~~vavl~gklYn~lYviGG~g~~-~dp~~n-- 491 (583)
-+|+++|++. +-+.|.-....|.. .|.+|-+|+-.+.++ ..|++||.... -||..|
T Consensus 92 trilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gn----KcYlFGGLaNdseDpknNvP 167 (830)
T KOG4152|consen 92 TRILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGN----KCYLFGGLANDSEDPKNNVP 167 (830)
T ss_pred ceEEEEccEeeeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEecc----EeEEeccccccccCcccccc
Confidence 3677777642 22334444444542 556799999999994 55599996211 122222
Q ss_pred ----------------------------CCCCCCceEEEEE-------------ccccCC--CCccccccccceeeecCC
Q 007950 492 ----------------------------MDQQSSFHCFGLF-------------LGMQEK--GSVSFAVDYEFAARIKPT 528 (583)
Q Consensus 492 ----------------------------M~~~R~~~~~~vl-------------~G~~~~--~~lssvVd~~~aErYdP~ 528 (583)
.+.+|..|..+++ ||++|- +.|=. .|.+.--.-.|+
T Consensus 168 rYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~RLgDLW~-Ldl~Tl~W~kp~ 246 (830)
T KOG4152|consen 168 RYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGCRLGDLWT-LDLDTLTWNKPS 246 (830)
T ss_pred hhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEcccccccccceeE-Eecceeeccccc
Confidence 7788888776654 555432 22111 111111222223
Q ss_pred ceeecCCCCcceecceeeecccccccccccceecCCceEEECCeeee
Q 007950 529 EEYVSKYKGNYTFTGGKAVGYRNLFGIPWTAFMADDSIYFINGNLHL 575 (583)
Q Consensus 529 W~~vapm~~~~~~~g~~avg~~~~~~~~~~~~~~~~~~~~i~~~~~~ 575 (583)
-.-++||| ++.|....+| +++|..||-.-|
T Consensus 247 ~~G~~PlP--RSLHsa~~IG---------------nKMyvfGGWVPl 276 (830)
T KOG4152|consen 247 LSGVAPLP--RSLHSATTIG---------------NKMYVFGGWVPL 276 (830)
T ss_pred ccCCCCCC--cccccceeec---------------ceeEEecceeee
Confidence 33466774 5667777788 788888885544
No 52
>PF13964 Kelch_6: Kelch motif
Probab=89.63 E-value=0.44 Score=35.91 Aligned_cols=29 Identities=17% Similarity=0.124 Sum_probs=22.1
Q ss_pred eeeeEeec-------ceeEEEecCCCCeEEe---ecccc
Q 007950 432 ERAYKYRP-------VKVVEFELPRQQCVVY---LDLKR 460 (583)
Q Consensus 432 ~~lyv~~p-------~ksVe~ydp~~~~W~~---L~~~R 460 (583)
+.||++|+ .+.+++|||.+++|.. |+.+|
T Consensus 12 ~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~pR 50 (50)
T PF13964_consen 12 GKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPTPR 50 (50)
T ss_pred CEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCCCC
Confidence 46777554 4689999999999998 55554
No 53
>PF13854 Kelch_5: Kelch motif
Probab=88.35 E-value=0.46 Score=34.83 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=19.8
Q ss_pred ecccccceeEEeeCCeeeceeEEecccc
Q 007950 456 LDLKREECAHLFPAGRIYSQAFHLGGQG 483 (583)
Q Consensus 456 L~~~R~~~~vavl~gklYn~lYviGG~g 483 (583)
+|.+|..|++++.+++|| +.||..
T Consensus 1 ~P~~R~~hs~~~~~~~iy----i~GG~~ 24 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIY----IFGGYS 24 (42)
T ss_pred CCCCccceEEEEECCEEE----EEcCcc
Confidence 477899999999996655 999983
No 54
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=88.15 E-value=0.8 Score=49.86 Aligned_cols=91 Identities=16% Similarity=0.230 Sum_probs=65.0
Q ss_pred EEEEEe--eEEcchhhhcccC--cccccccCCccccccchhhhHHHHHHHHHHHHHHhhcCCCCCCcc--eEEEecCCCC
Q 007950 147 TVLRVK--TVHISSPILAAKS--PFFYKVNVPSLVYAFCIPWFLLLWLVILCIFLQLFSNGMRESEQR--YVTLRIHASE 220 (583)
Q Consensus 147 v~l~v~--~~~aHr~iLaa~S--~yF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~es~~~--~v~l~~~~~~ 220 (583)
|.|.|+ .|.-.+.-|+-.. .+|-+ ++++.+.-.... .|-| |=+
T Consensus 13 V~lNVGGriF~Ts~qTL~~~~~DSffsa----------------------------L~s~~~~s~~~~~~~iFI---DRD 61 (465)
T KOG2714|consen 13 VKLNVGGRIFETSAQTLTWIPRDSFFSA----------------------------LLSGRINSLKDESGAIFI---DRD 61 (465)
T ss_pred EEEecCceEEecchhhhhcCCcchHHHH----------------------------HhcCccccccCCCCceEe---cCC
Confidence 456664 4877777775443 47777 888766544333 2555 789
Q ss_pred HHHHHHHHhhhccCccccCCcchHHHHHHHhchhhhcchhh---hhhhccc
Q 007950 221 EAALMELLNFMYSSTLSTTTPTALLDVLMAADKFEVASCMR---YCSRLLR 268 (583)
Q Consensus 221 ~~~f~~lL~fiYtg~l~i~~~~~v~~lL~aAd~~~v~~l~~---~C~~~L~ 268 (583)
|+.|..+|+|+-||++++....-...++.-|.+||+..+.+ +|++.+.
T Consensus 62 PdlFaviLn~LRTg~L~~~g~~~~~llhdEA~fYGl~~llrrl~~~~~~F~ 112 (465)
T KOG2714|consen 62 PDLFAVILNLLRTGDLDASGVFPERLLHDEAMFYGLTPLLRRLTLCEELFD 112 (465)
T ss_pred chHHHHHHHHHhcCCCCCccCchhhhhhhhhhhcCcHHHHHHhhcCccccc
Confidence 99999999999999999966233344444899999999886 6777554
No 55
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=87.62 E-value=0.98 Score=50.17 Aligned_cols=72 Identities=13% Similarity=0.067 Sum_probs=50.9
Q ss_pred eeeeEeecc-----eeEEEecCCCCeEEe------ecccccceeEEeeCCeeeceeEEeccc---ccc------------
Q 007950 432 ERAYKYRPV-----KVVEFELPRQQCVVY------LDLKREECAHLFPAGRIYSQAFHLGGQ---GFF------------ 485 (583)
Q Consensus 432 ~~lyv~~p~-----ksVe~ydp~~~~W~~------L~~~R~~~~vavl~gklYn~lYviGG~---g~~------------ 485 (583)
|.|+++|+. ...+.|+..+++|.. +|.+..-||.+..+ +++|++||. |.+
T Consensus 43 ELiviFGGGNEGiiDELHvYNTatnqWf~PavrGDiPpgcAA~GfvcdG----trilvFGGMvEYGkYsNdLYELQasRW 118 (830)
T KOG4152|consen 43 ELIVIFGGGNEGIIDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVCDG----TRILVFGGMVEYGKYSNDLYELQASRW 118 (830)
T ss_pred eeEEEecCCcccchhhhhhhccccceeecchhcCCCCCchhhcceEecC----ceEEEEccEeeeccccchHHHhhhhhh
Confidence 556666553 467789999999987 66666677777777 555699996 432
Q ss_pred ----cCccC--C--CCCCCCceEEEEEccc
Q 007950 486 ----LSAHC--N--MDQQSSFHCFGLFLGM 507 (583)
Q Consensus 486 ----~dp~~--n--M~~~R~~~~~~vl~G~ 507 (583)
+.|+. | .+.+|-.|+|.+.+.+
T Consensus 119 eWkrlkp~~p~nG~pPCPRlGHSFsl~gnK 148 (830)
T KOG4152|consen 119 EWKRLKPKTPKNGPPPCPRLGHSFSLVGNK 148 (830)
T ss_pred hHhhcCCCCCCCCCCCCCccCceeEEeccE
Confidence 14443 2 8999999999876554
No 56
>smart00202 SR Scavenger receptor Cys-rich. The sea ucrhin egg peptide speract contains 4 repeats of SR domains that contain 6 conserved cysteines. May bind bacterial antigens in the protein MARCO.
Probab=87.54 E-value=0.1 Score=45.38 Aligned_cols=60 Identities=22% Similarity=0.248 Sum_probs=42.5
Q ss_pred CCCCCCcccccCCccccceeeEeeccCCCCCCCCCCCCchhhhhhhhhhhhhhhhhhcCCcccccceeeccccc
Q 007950 22 LPDSDFGFAFNDSNFSDRVLRIEIMPDLPDSKSDGDACSSIADWARNRKRRREEIKKDTVDVLVQREQILQCNM 95 (583)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~w~~~~~~~r~~~~~~~~~~~~~~~~~~~c~~ 95 (583)
+++|+.+|.-++++++||+|++........+..++.+-.++ |. ....|.+.|..+-+|..
T Consensus 23 g~VC~~~w~~~~A~vvCrqlG~~~~~~~~~~~~~~~~~~~~--~~------------~~~~C~G~E~sl~~C~~ 82 (101)
T smart00202 23 GTVCDDGWDLRDANVVCRQLGFGGALSASGSAYFGPGSGPI--WL------------DNVRCTGTEASLSDCPH 82 (101)
T ss_pred eCeeCCCCChhHHHHHHHHcCCCCcccceeccccCCCCCCe--EE------------EcceEcCCCCCHHHCCC
Confidence 37999999999999999999998887655444444443333 44 34556677776677754
No 57
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=86.61 E-value=1.2 Score=33.52 Aligned_cols=27 Identities=11% Similarity=-0.192 Sum_probs=23.4
Q ss_pred eeEEEecCCCCeEEe---ecccccceeEEe
Q 007950 441 KVVEFELPRQQCVVY---LDLKREECAHLF 467 (583)
Q Consensus 441 ksVe~ydp~~~~W~~---L~~~R~~~~vav 467 (583)
+.+..||+.+++|+. +|.+|..|++++
T Consensus 19 nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~ 48 (49)
T PF13415_consen 19 NDVWVFDLDTNTWTRIGDLPPPRSGHTATV 48 (49)
T ss_pred cCEEEEECCCCEEEECCCCCCCccceEEEE
Confidence 577889999999998 788899998876
No 58
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]
Probab=86.18 E-value=0.56 Score=45.05 Aligned_cols=69 Identities=13% Similarity=0.208 Sum_probs=51.4
Q ss_pred ceEEEecCCCCHHHHHHHHhhhccCccc-------------------------cCCcchHHHHHHHhchhhhcchhhhhh
Q 007950 210 RYVTLRIHASEEAALMELLNFMYSSTLS-------------------------TTTPTALLDVLMAADKFEVASCMRYCS 264 (583)
Q Consensus 210 ~~v~l~~~~~~~~~f~~lL~fiYtg~l~-------------------------i~~~~~v~~lL~aAd~~~v~~l~~~C~ 264 (583)
..|.|+ ++....|..+|+|++.-+-. +.. .++.+|..||.+|.++.|...|+
T Consensus 44 ~~IPl~--nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~~WD~~Flk~d~-~tLfdli~AAnyLdi~gLl~~~c 120 (162)
T KOG1724|consen 44 DPIPLP--NVTSKILKKVIEWCKKHKDDDPANPEDKELPEETDIPEWDAEFLKVDQ-GTLFDLILAANYLDIKGLLDLTC 120 (162)
T ss_pred CccccC--ccCHHHHHHHHHHHHHcccccccccccccccccCCccHHHHHHHhcCH-HHHHHHHHHhhhcccHHHHHHHH
Confidence 356665 89999999999999873321 122 58999999999999999999999
Q ss_pred hccccC--CCCchhhhhhc
Q 007950 265 RLLRNL--PMTCESALLYL 281 (583)
Q Consensus 265 ~~L~~~--~l~~~n~~~~l 281 (583)
+.+.++ +.+++..-.+.
T Consensus 121 k~va~mikgktpeEir~~f 139 (162)
T KOG1724|consen 121 KTVANMIKGKTPEEIREIF 139 (162)
T ss_pred HHHHHHHccCCHHHHHHHc
Confidence 988763 23455444443
No 59
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=83.03 E-value=2 Score=31.57 Aligned_cols=25 Identities=20% Similarity=0.146 Sum_probs=19.7
Q ss_pred eeeeEeec-------ceeEEEecCCCCeEEee
Q 007950 432 ERAYKYRP-------VKVVEFELPRQQCVVYL 456 (583)
Q Consensus 432 ~~lyv~~p-------~ksVe~ydp~~~~W~~L 456 (583)
+.||+.|+ .+++++||+.+++|..+
T Consensus 12 ~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~ 43 (47)
T PF01344_consen 12 NKIYVIGGYDGNNQPTNSVEVYDPETNTWEEL 43 (47)
T ss_dssp TEEEEEEEBESTSSBEEEEEEEETTTTEEEEE
T ss_pred CEEEEEeeecccCceeeeEEEEeCCCCEEEEc
Confidence 45777544 46899999999999984
No 60
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=81.58 E-value=1.7 Score=32.67 Aligned_cols=24 Identities=4% Similarity=-0.211 Sum_probs=20.7
Q ss_pred eeecC---CceeecCCCCcceecceee
Q 007950 523 ARIKP---TEEYVSKYKGNYTFTGGKA 546 (583)
Q Consensus 523 ErYdP---~W~~vapm~~~~~~~g~~a 546 (583)
-.||+ +|+.++++|.++..|..++
T Consensus 22 ~~~~~~~~~W~~~~~~P~~R~~h~~~~ 48 (49)
T PF13415_consen 22 WVFDLDTNTWTRIGDLPPPRSGHTATV 48 (49)
T ss_pred EEEECCCCEEEECCCCCCCccceEEEE
Confidence 78999 9999999999998887543
No 61
>PF00530 SRCR: Scavenger receptor cysteine-rich domain; InterPro: IPR001190 The egg peptide speract receptor is a transmembrane glycoprotein []. Other members of this family include the macrophage scavenger receptor type I (a membrane glycoprotein implicated in the pathologic deposition of cholesterol in arterial walls during artherogenesis), an enteropeptidase and T-cell surface glycoprotein CD5 (may act as a receptor in regulating T-cell proliferation).; GO: 0005044 scavenger receptor activity, 0016020 membrane; PDB: 2XRC_D 2JP0_A 2JOP_A 2OYA_A 2OY3_A 1BY2_A 2OTT_Y 2JA4_A.
Probab=81.27 E-value=0.085 Score=45.18 Aligned_cols=61 Identities=21% Similarity=0.321 Sum_probs=41.3
Q ss_pred CCCCCcccccCCccccceeeEeeccCCCCCCCCCCCCchhhhhhhhhhhhhhhhhhcCCcccccceeeccccccC
Q 007950 23 PDSDFGFAFNDSNFSDRVLRIEIMPDLPDSKSDGDACSSIADWARNRKRRREEIKKDTVDVLVQREQILQCNMPD 97 (583)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~w~~~~~~~r~~~~~~~~~~~~~~~~~~~c~~~~ 97 (583)
.+|+.+|+.++++++||+|++..+...+.....+.+-.++ |. ....|.+.+..+.+|....
T Consensus 22 ~vC~~~w~~~~a~vvCrqLG~~~~~~~~~~~~~~~~~~~~--~~------------~~~~C~g~e~~l~~C~~~~ 82 (99)
T PF00530_consen 22 TVCDDGWSMNEANVVCRQLGYGGASSTSSSSSFGSGSGPI--WL------------SNVNCSGNETSLSECTHSP 82 (99)
T ss_dssp EEBTTT-SHHHHHHHHHHTTSSEEEEEEECTTTTSS-S-E--CE------------CCEEEBSSTSSGGGSBSSE
T ss_pred eEECCCcchhHHHHHhhhhhccccceeeeecccccccccc--cc------------cCCEecCCCCcHhhCCCcC
Confidence 6999999999999999999996666544333434443343 44 3455677888888886643
No 62
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=78.56 E-value=0.65 Score=38.91 Aligned_cols=46 Identities=20% Similarity=0.427 Sum_probs=31.4
Q ss_pred CCcchHHHHHHHhchhhhcchhhhhhhccccC--CCCchhhhhhcccch
Q 007950 239 TTPTALLDVLMAADKFEVASCMRYCSRLLRNL--PMTCESALLYLDLPS 285 (583)
Q Consensus 239 ~~~~~v~~lL~aAd~~~v~~l~~~C~~~L~~~--~l~~~n~~~~l~~a~ 285 (583)
+. ..+.+|+.||++|+++.|...|++.+... +.+++....++.+..
T Consensus 12 ~~-~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~gks~eeir~~fgi~~ 59 (78)
T PF01466_consen 12 DN-DELFDLLNAANYLDIKGLLDLCCKYIANMIKGKSPEEIRKYFGIEN 59 (78)
T ss_dssp -H-HHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-HHHHHHHHT---
T ss_pred CH-HHHHHHHHHHHHHcchHHHHHHHHHHHHHhcCCCHHHHHHHcCCCC
Confidence 44 78999999999999999999999988752 345555555554443
No 63
>cd03774 MATH_SPOP Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP. SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled pattern in the nuclei. It contains an N-terminal MATH domain and a C-terminal BTB (also called POZ) domain. Together with Cul3, SPOP constitutes an ubiquitin E3 ligase which is able to ubiquitinate the PcG protein BMI1, the variant histone macroH2A1 and the death domain-associated protein Daxx. Therefore, SPOP may be involved in the regulation of these proteins and may play a role in transcriptional regulation, apoptosis and X-chromosome inactivation. Cul3 binds to the BTB domain of SPOP whereas Daxx and the macroH2A1 nonhistone region have been shown to bind to the MATH domain. Both MATH and BTB domains are necessary for the nuclear speckled accumulation of SPOP. There are many proteins, mostly uncharacterized, conta
Probab=77.38 E-value=0.86 Score=41.93 Aligned_cols=36 Identities=19% Similarity=0.378 Sum_probs=29.8
Q ss_pred hhhhhhhhhhhhhhhhcCCcccccceeeccccccCC
Q 007950 63 ADWARNRKRRREEIKKDTVDVLVQREQILQCNMPDT 98 (583)
Q Consensus 63 ~~w~~~~~~~r~~~~~~~~~~~~~~~~~~~c~~~~~ 98 (583)
.+||+.+|++|++|++....++.+|+.+|+|.+.+.
T Consensus 102 ~~wG~~~fi~~~~L~~~~~g~l~dD~l~I~c~I~V~ 137 (139)
T cd03774 102 KDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVV 137 (139)
T ss_pred CccCHHHeeeHHHhhhhhcccccCCEEEEEEEEEEE
Confidence 369999999999997543357899999999998764
No 64
>cd03779 MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF1 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF1 expression is the most restricted among the TRAFs. It is found exclusively in activated lymphocytes, dendritic cells and certain epithelia. TRAF1 associates, directly or indirectly through heterodimerization with TRAF2, with the TNFR family receptors TNFR-2, CD30, RANK, CD40 and LMP1, among others. It also binds the intracellular proteins TRADD, TANK, TRIP, RIP1, RIP2 and FLIP. TRAF1 is unique among the TRAFs in that it lacks a RING domain, which is critical for the activation of nuclear factor-kappaB and Jun NH2-terminal kinase. Studies on TRAF1-deficient mice suggest that TRAF1 has a negative regulatory role in TNFR-mediat
Probab=76.94 E-value=1 Score=42.62 Aligned_cols=32 Identities=3% Similarity=-0.053 Sum_probs=27.9
Q ss_pred hhhhhhhhhhhhhhhcCCcccccceeeccccc
Q 007950 64 DWARNRKRRREEIKKDTVDVLVQREQILQCNM 95 (583)
Q Consensus 64 ~w~~~~~~~r~~~~~~~~~~~~~~~~~~~c~~ 95 (583)
.||..+|++|++||++...++.+|++.|+|.+
T Consensus 115 ~~G~~~Fi~~~~Le~s~~~ylkDD~~~Irc~V 146 (147)
T cd03779 115 ASGCPLFFPLKKLQSPKHAYCKDDTIYIKCVV 146 (147)
T ss_pred CcchhheeEHHHhcccCCCcEeCCEEEEEEEE
Confidence 49999999999999884457999999999965
No 65
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.71 E-value=4.1 Score=43.68 Aligned_cols=39 Identities=15% Similarity=0.119 Sum_probs=29.3
Q ss_pred eeEEEecCCCCeEEeec----ccccceeEEeeCCeeeceeEEeccc
Q 007950 441 KVVEFELPRQQCVVYLD----LKREECAHLFPAGRIYSQAFHLGGQ 482 (583)
Q Consensus 441 ksVe~ydp~~~~W~~L~----~~R~~~~vavl~gklYn~lYviGG~ 482 (583)
+.+..|||.+++|+.|+ ....++.++.+++ ..+|+.||+
T Consensus 113 nd~Y~y~p~~nsW~kl~t~sP~gl~G~~~~~~~~---~~i~f~GGv 155 (381)
T COG3055 113 NDAYRYDPSTNSWHKLDTRSPTGLVGASTFSLNG---TKIYFFGGV 155 (381)
T ss_pred eeeEEecCCCChhheeccccccccccceeEecCC---ceEEEEccc
Confidence 46778999999999844 3345677788886 245599997
No 66
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=75.54 E-value=2.5 Score=44.75 Aligned_cols=65 Identities=14% Similarity=0.098 Sum_probs=50.7
Q ss_pred hhhhhhhccccCCCCchhhhhhcccchhhhhhhccHHHHHHHHHHHHHhcccccccchhhhCCCHHHHHHH
Q 007950 259 CMRYCSRLLRNLPMTCESALLYLDLPSSVLMADAVQPLTDTAKQFLAARYKDISKFQEEVLNLPLAGIEAV 329 (583)
Q Consensus 259 l~~~C~~~L~~~~l~~~n~~~~l~~a~~~~~~~~~~~L~~~~~~fi~~~f~~v~~~~~~f~~L~~~~l~~l 329 (583)
|++++..--- .++++||+.++--++-. ..++|.+.|++|+..|+.+|++..-.+..|+.+.|..|
T Consensus 61 Lm~yv~~~~p--~l~~~NvvsIliSS~FL----~M~~Lve~cl~y~~~~~~~Iv~~~~nl~Cl~~~Ll~RL 125 (317)
T PF11822_consen 61 LMRYVKGEPP--SLTPSNVVSILISSEFL----QMESLVEECLQYCHDHMSEIVASPCNLNCLNDNLLTRL 125 (317)
T ss_pred HHHHhhcCCC--cCCcCcEEEeEehhhhh----ccHHHHHHHHHHHHHhHHHHHcCCCCcccCCHHHHHHH
Confidence 4455555222 58999999999766644 56899999999999999999984457778998888776
No 67
>PLN02772 guanylate kinase
Probab=75.47 E-value=4.6 Score=44.18 Aligned_cols=48 Identities=6% Similarity=-0.096 Sum_probs=37.3
Q ss_pred eeeeEeec-------ceeEEEecCCCCeEEe------ecccccceeEEeeCCeeeceeEEeccc
Q 007950 432 ERAYKYRP-------VKVVEFELPRQQCVVY------LDLKREECAHLFPAGRIYSQAFHLGGQ 482 (583)
Q Consensus 432 ~~lyv~~p-------~ksVe~ydp~~~~W~~------L~~~R~~~~vavl~gklYn~lYviGG~ 482 (583)
+.+|+.|+ .+.+.+||+.+++|.. -|.+|.+|+++++++ .+++|+++.
T Consensus 35 dk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~---~rilv~~~~ 95 (398)
T PLN02772 35 DKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNK---DRILVIKKG 95 (398)
T ss_pred CEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECC---ceEEEEeCC
Confidence 56788553 2478899999999997 678899999999854 455688864
No 68
>cd03781 MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF4 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF4, including the Drosophila protein DTRAF1. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF4 is highly expressed during embryogenesis, especially in the central and peripheral nervous system. Studies using TRAF4-deficient mice show that TRAF4 is required for neurogenesis, as well as the development of the trachea and the axial skeleton. In addition, TRAF4 augments nuclear factor-kappaB activation triggered by GITR (glucocorticoid-induced TNFR), a receptor expressed in T-cells, B-cells and macrophages. It also participates in counteracting the signaling mediated by Toll-like receptors through its association with TRAF6 and TR
Probab=74.49 E-value=1.3 Score=41.82 Aligned_cols=30 Identities=13% Similarity=0.255 Sum_probs=26.9
Q ss_pred hhhhhhhhhhhhhhhcCCcccccceeeccccc
Q 007950 64 DWARNRKRRREEIKKDTVDVLVQREQILQCNM 95 (583)
Q Consensus 64 ~w~~~~~~~r~~~~~~~~~~~~~~~~~~~c~~ 95 (583)
.||..+|++|++||++. ++.+|+++|+|.+
T Consensus 124 ~~G~~~fi~~~~Le~~~--yl~dD~l~Irc~v 153 (154)
T cd03781 124 GFGYPKFISHEDLKKRN--YIKDDAIFLRASV 153 (154)
T ss_pred ccchhHeeEHHHHhhCC--cccCCEEEEEEEe
Confidence 59999999999999876 6999999999965
No 69
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.78 E-value=8.3 Score=41.42 Aligned_cols=83 Identities=18% Similarity=0.245 Sum_probs=52.7
Q ss_pred CCCeEEe---ec-ccccceeEEeeCCeeeceeEEecccccccCccCCCCCCCCceEEEEEccccCCCCccccccccceee
Q 007950 449 RQQCVVY---LD-LKREECAHLFPAGRIYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFAVDYEFAAR 524 (583)
Q Consensus 449 ~~~~W~~---L~-~~R~~~~vavl~gklYn~lYviGG~g~~~dp~~nM~~~R~~~~~~vl~G~~~~~~lssvVd~~~aEr 524 (583)
....|+. +| .+|.+...++++|+|| +.||.|..-. . .-..++.+ -+
T Consensus 68 ~~k~W~~~a~FpG~~rnqa~~a~~~~kLy----vFgG~Gk~~~-----~---------------~~~~~nd~------Y~ 117 (381)
T COG3055 68 PGKGWTKIADFPGGARNQAVAAVIGGKLY----VFGGYGKSVS-----S---------------SPQVFNDA------YR 117 (381)
T ss_pred CCCCceEcccCCCcccccchheeeCCeEE----EeeccccCCC-----C---------------CceEeeee------EE
Confidence 3467987 33 4688888899998777 9999863210 0 00012232 89
Q ss_pred ecC---CceeecCCCCcceecceeeecccccccccccceecCCceEEECCeee
Q 007950 525 IKP---TEEYVSKYKGNYTFTGGKAVGYRNLFGIPWTAFMADDSIYFINGNLH 574 (583)
Q Consensus 525 YdP---~W~~vapm~~~~~~~g~~avg~~~~~~~~~~~~~~~~~~~~i~~~~~ 574 (583)
||| +|..+..... +.+.|..++.. ++..+||.||+-|
T Consensus 118 y~p~~nsW~kl~t~sP-~gl~G~~~~~~------------~~~~i~f~GGvn~ 157 (381)
T COG3055 118 YDPSTNSWHKLDTRSP-TGLVGASTFSL------------NGTKIYFFGGVNQ 157 (381)
T ss_pred ecCCCChhheeccccc-cccccceeEec------------CCceEEEEccccH
Confidence 999 9999875533 22555454443 2458999999854
No 70
>KOG1778 consensus CREB binding protein/P300 and related TAZ Zn-finger proteins [Transcription]
Probab=70.77 E-value=2.2 Score=45.27 Aligned_cols=131 Identities=18% Similarity=0.199 Sum_probs=97.1
Q ss_pred eEEcchhhhcccCcccccccCCccccccchhhhHHHHHHHHHHHHHHhhcCCCCCCcceEEEecCCCCHHHHHHHHhhhc
Q 007950 153 TVHISSPILAAKSPFFYKVNVPSLVYAFCIPWFLLLWLVILCIFLQLFSNGMRESEQRYVTLRIHASEEAALMELLNFMY 232 (583)
Q Consensus 153 ~~~aHr~iLaa~S~yF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~es~~~~v~l~~~~~~~~~f~~lL~fiY 232 (583)
.+.+|+.+|+..||.|.. +....-..+....+.+. .++..++..+..|.|
T Consensus 37 ~~~~~s~~l~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~--~~~c~~~~~~~~~l~ 86 (319)
T KOG1778|consen 37 LIPAHSLVLGPASPVFKK----------------------------VLKQPCRKSLVKGNKIL--GVPCKAVNVFIRFLY 86 (319)
T ss_pred hhHHHHhcccccchHHHH----------------------------HHhhhcchhhhhcceee--cccccccchhhhhhc
Confidence 599999999999999988 33332222223344554 788889999999999
Q ss_pred cCccccCC-cchHHHHHHHhchhhhcchhhhhhhccccCCCCchhhhhhcccchhhhhhhccHHHHHHHHHHHHHhcccc
Q 007950 233 SSTLSTTT-PTALLDVLMAADKFEVASCMRYCSRLLRNLPMTCESALLYLDLPSSVLMADAVQPLTDTAKQFLAARYKDI 311 (583)
Q Consensus 233 tg~l~i~~-~~~v~~lL~aAd~~~v~~l~~~C~~~L~~~~l~~~n~~~~l~~a~~~~~~~~~~~L~~~~~~fi~~~f~~v 311 (583)
.+ ++... ..-...++.+...+-++..+..|...+..--++..++...+..+..+ ....|..+....+...|..+
T Consensus 87 ~~-~ek~e~~~~~ihll~~~~~~~v~~~~~d~~~~~~~~~~~~r~~flvl~~~~~~----~~~~lr~a~hss~~~~~~~H 161 (319)
T KOG1778|consen 87 SS-LEKHEMVFFDIHLLALSHVYVVPQPKADCDPILECGLFDKRNVFLVLQLAEHC----DFSDLRRAKHSSIMLLFDLH 161 (319)
T ss_pred cc-hhhhHHHHHHHHHHhhhhhhhccCccccCCccccchhhhhHHHHHHHHHHHhc----ccchHHHHHHHHHHHHHHHH
Confidence 98 43322 13355677777889999999999998886347888899999888877 56788888888888888888
Q ss_pred cccchhhh
Q 007950 312 SKFQEEVL 319 (583)
Q Consensus 312 ~~~~~~f~ 319 (583)
.. ++.+.
T Consensus 162 ~~-t~~~~ 168 (319)
T KOG1778|consen 162 LQ-TEKWF 168 (319)
T ss_pred hc-ccCce
Confidence 77 55443
No 71
>cd03776 MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF6 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF6, including the Drosophila protein DTRAF2. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF6 is the most divergent in its TRAF domain among the mammalian TRAFs. In addition to mediating TNFR family signaling, it is also an essential signaling molecule of the interleukin-1/Toll-like receptor superfamily. Whereas other TRAF molecules display similar and overlapping TNFR-binding specificities, TRAF6 binds completely different sites on receptors such as CD40 and RANK. TRAF6 serves as a molecular bridge between innate and adaptive immunity and plays a central role in osteoimmunology. DTRAF2, as an activator of nuclear factor-kapp
Probab=69.23 E-value=1.8 Score=40.41 Aligned_cols=30 Identities=3% Similarity=0.107 Sum_probs=27.0
Q ss_pred hhhhhhhhhhhhhhhcCCcccccceeeccccc
Q 007950 64 DWARNRKRRREEIKKDTVDVLVQREQILQCNM 95 (583)
Q Consensus 64 ~w~~~~~~~r~~~~~~~~~~~~~~~~~~~c~~ 95 (583)
.||+.+|++|++||++. ++.+|+++|+|.+
T Consensus 117 ~~G~~~fi~~~~Le~~~--yl~dD~l~I~c~V 146 (147)
T cd03776 117 GFGYVEFAHIEDLLQRG--FVKNDTLLIKIEV 146 (147)
T ss_pred CeeEceeeEHHHhhhCC--CccCCEEEEEEEE
Confidence 59999999999999876 5899999999975
No 72
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=65.63 E-value=19 Score=28.65 Aligned_cols=48 Identities=13% Similarity=0.140 Sum_probs=35.7
Q ss_pred eEEcchhhhcccCcccccccCCccccccchhhhHHHHHHHHHHHHHHhhcCCCCCCcceEEEecCCCCHHHHHHHHhhhc
Q 007950 153 TVHISSPILAAKSPFFYKVNVPSLVYAFCIPWFLLLWLVILCIFLQLFSNGMRESEQRYVTLRIHASEEAALMELLNFMY 232 (583)
Q Consensus 153 ~~~aHr~iLaa~S~yF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~es~~~~v~l~~~~~~~~~f~~lL~fiY 232 (583)
.|.+.+.+.. .|+.++. |+.+.-.+.. .|.|+ +++...|+.+++|++
T Consensus 12 ~f~V~~~~a~-~S~~i~~----------------------------ml~~~~~~~~--~Ipl~--~v~~~~L~kViewc~ 58 (62)
T PF03931_consen 12 EFEVSREAAK-QSKTIKN----------------------------MLEDLGDEDE--PIPLP--NVSSRILKKVIEWCE 58 (62)
T ss_dssp EEEEEHHHHT-TSHHHHH----------------------------HHHCTCCCGT--EEEET--TS-HHHHHHHHHHHH
T ss_pred EEEeeHHHHH-HhHHHHH----------------------------HHhhhccccc--ccccC--ccCHHHHHHHHHHHH
Confidence 5888888774 6899998 8876333222 56666 999999999999986
Q ss_pred c
Q 007950 233 S 233 (583)
Q Consensus 233 t 233 (583)
.
T Consensus 59 ~ 59 (62)
T PF03931_consen 59 H 59 (62)
T ss_dssp H
T ss_pred h
Confidence 3
No 73
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=64.78 E-value=2.3 Score=45.73 Aligned_cols=84 Identities=14% Similarity=0.103 Sum_probs=53.9
Q ss_pred CccEEEEEe---eEEcchhhhcccCcccccccCCccccccchhhhHHHHHHHHHHHHHHhhcCCCCCCcceEEEecCCCC
Q 007950 144 DLSTVLRVK---TVHISSPILAAKSPFFYKVNVPSLVYAFCIPWFLLLWLVILCIFLQLFSNGMRESEQRYVTLRIHASE 220 (583)
Q Consensus 144 ~~Dv~l~v~---~~~aHr~iLaa~S~yF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~es~~~~v~l~~~~~~ 220 (583)
-.|+++.++ -|.|||..|+|+|.+|.. +.+ ||.-. ..+|.- ..+-
T Consensus 149 ~~di~f~~q~g~~f~ahkfll~arSs~~~~--k~v-----------------------~~~~~-----~heI~~--~~v~ 196 (516)
T KOG0511|consen 149 CHDIDFLQQEGANFDAHKFLLEARSSNYFP--KDV-----------------------MFYVQ-----GHEIEA--HRVI 196 (516)
T ss_pred ccchHHHhhccccccHHHHHHHhhhcccCc--hhh-----------------------hhccc-----cCchhh--hhhh
Confidence 457888773 499999999999998876 111 33211 122321 2577
Q ss_pred HHHHHHHHhhhccCccccCCcchHHHHHHHhchhhhcchh
Q 007950 221 EAALMELLNFMYSSTLSTTTPTALLDVLMAADKFEVASCM 260 (583)
Q Consensus 221 ~~~f~~lL~fiYtg~l~i~~~~~v~~lL~aAd~~~v~~l~ 260 (583)
+.+|..+++|+|-..-.+-. +.--.|+.+..+|+++.+.
T Consensus 197 ~~~f~~flk~lyl~~na~~~-~qynallsi~~kF~~e~l~ 235 (516)
T KOG0511|consen 197 LSAFSPFLKQLYLNTNAEWK-DQYNALLSIEVKFSKEKLS 235 (516)
T ss_pred HhhhhHHHHHHHHhhhhhhh-hHHHHHHhhhhhccHHHhH
Confidence 88999999999977333333 4445666666666665443
No 74
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=59.41 E-value=7.4 Score=35.96 Aligned_cols=58 Identities=17% Similarity=0.300 Sum_probs=43.2
Q ss_pred EEEecCCCCHHHHHHHHhhhccCccccCC------------------------cchHHHHHHHhchhhhcchhhhhhhcc
Q 007950 212 VTLRIHASEEAALMELLNFMYSSTLSTTT------------------------PTALLDVLMAADKFEVASCMRYCSRLL 267 (583)
Q Consensus 212 v~l~~~~~~~~~f~~lL~fiYtg~l~i~~------------------------~~~v~~lL~aAd~~~v~~l~~~C~~~L 267 (583)
+.++.+++...+|+.+++|+-..+-..+. .++++++..||.++.++.|.+.|++.+
T Consensus 39 ~p~p~pnVrSsvl~kv~ew~ehh~~s~sede~d~~~rks~p~D~wdr~Fm~vDqemL~eI~laaNYL~ikpLLd~gCKiv 118 (158)
T COG5201 39 YPIPAPNVRSSVLMKVQEWMEHHTSSLSEDENDLEIRKSKPSDFWDRFFMEVDQEMLLEICLAANYLEIKPLLDLGCKIV 118 (158)
T ss_pred CCCcccchhHHHHHHHHHHHHhccccCCCccChHhhhccCCccHHHHHHHHhhHHHHHHHHHhhccccchHHHHHHHHHH
Confidence 34444589999999999999543222111 156889999999999999999999877
Q ss_pred cc
Q 007950 268 RN 269 (583)
Q Consensus 268 ~~ 269 (583)
.+
T Consensus 119 ae 120 (158)
T COG5201 119 AE 120 (158)
T ss_pred HH
Confidence 76
No 75
>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=51.96 E-value=16 Score=38.40 Aligned_cols=58 Identities=17% Similarity=0.298 Sum_probs=43.2
Q ss_pred HhhcCCC---CCCcceEEEecCCCCHHHHHHHHhhhccCccccCCcchHHHHHHHhchhhhc
Q 007950 199 LFSNGMR---ESEQRYVTLRIHASEEAALMELLNFMYSSTLSTTTPTALLDVLMAADKFEVA 257 (583)
Q Consensus 199 ~f~~~~~---es~~~~v~l~~~~~~~~~f~~lL~fiYtg~l~i~~~~~v~~lL~aAd~~~v~ 257 (583)
||.++.. ..+..+..+- +++...+|+++|+|--||.+...+.-.+-+|-.|.|++.++
T Consensus 125 mf~~g~~f~~pNErgEyeVA-dGi~s~vFRAILdYYksG~iRCP~~vSvpELrEACDYLlip 185 (438)
T KOG3840|consen 125 MFSMGADLVSPNERDEFEVA-DGMTSSCFRAILDYYQSGTMRCPSSVSVSELREACDYLLVP 185 (438)
T ss_pred hhcccccccCCCcCCceehh-cchhHHHHHHHHHHHhcCceeCCCCCchHHHHhhcceEEee
Confidence 6665432 2334566664 58999999999999999999876656778888888877664
No 76
>cd03773 MATH_TRIM37 Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins. Mutations in the human TRIM37 gene (also known as MUL) cause Mulibrey (muscle-liver-brain-eye) nanism, a rare growth disorder of prenatal onset characterized by dysmorphic features, pericardial constriction and hepatomegaly. TRIM37, similar to other TRIMs, contains a cysteine-rich, zinc-binding RING-finger domain followed by another cysteine-rich zinc-binding domain, the B-box, and a coiled-coil domain. TRIM37 is autoubiquitinated in a RING domain-dependent manner, indicating that it functions as an ubiquitin E3 ligase. In addition to the tripartite motif, TRIM37 also contains a MATH domain C-terminal to the coiled-coil domain. The MATH domain of TRIM37 has been shown to interact with the TRAF domain of six known TRAFs i
Probab=51.93 E-value=7.2 Score=35.21 Aligned_cols=31 Identities=23% Similarity=0.324 Sum_probs=26.5
Q ss_pred hhhhhhhhhhhhhhhcCCccccc--ceeecccccc
Q 007950 64 DWARNRKRRREEIKKDTVDVLVQ--REQILQCNMP 96 (583)
Q Consensus 64 ~w~~~~~~~r~~~~~~~~~~~~~--~~~~~~c~~~ 96 (583)
+||+.+|++|++|++.+ ++.+ |+.+++|.+.
T Consensus 98 ~wG~~~Fi~~~~L~~~g--fl~~~~D~l~i~~~v~ 130 (132)
T cd03773 98 CWGYNRFFRLDLLINEG--YLLPENDTLILRFSVR 130 (132)
T ss_pred CcCHHHhccHHHHhhCC--CcCCCCCEEEEEEEEe
Confidence 49999999999998754 6887 9999999764
No 77
>PLN02772 guanylate kinase
Probab=51.60 E-value=30 Score=38.06 Aligned_cols=75 Identities=16% Similarity=0.170 Sum_probs=43.5
Q ss_pred cccceeEEeeCCeeeceeEEecccccccCccCCCCCCCCceEEEEEccccCCCCccccccccceeeecC---Cceeec--
Q 007950 459 KREECAHLFPAGRIYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFAVDYEFAARIKP---TEEYVS-- 533 (583)
Q Consensus 459 ~R~~~~vavl~gklYn~lYviGG~g~~~dp~~nM~~~R~~~~~~vl~G~~~~~~lssvVd~~~aErYdP---~W~~va-- 533 (583)
++..++++++++++| ++||. ++.+.++..| -+||+ +|..-.
T Consensus 24 ~~~~~tav~igdk~y----v~GG~-------------------------~d~~~~~~~v-----~i~D~~t~~W~~P~V~ 69 (398)
T PLN02772 24 PKNRETSVTIGDKTY----VIGGN-------------------------HEGNTLSIGV-----QILDKITNNWVSPIVL 69 (398)
T ss_pred CCCcceeEEECCEEE----EEccc-------------------------CCCccccceE-----EEEECCCCcEeccccc
Confidence 566788888997766 76654 3333244444 78898 666543
Q ss_pred -CCCCcceecceeeecccccccccccceecCCceEE
Q 007950 534 -KYKGNYTFTGGKAVGYRNLFGIPWTAFMADDSIYF 568 (583)
Q Consensus 534 -pm~~~~~~~g~~avg~~~~~~~~~~~~~~~~~~~~ 568 (583)
+-|.++-.|..+.++-.++..+--.+= .|++|+|
T Consensus 70 G~~P~~r~GhSa~v~~~~rilv~~~~~~-~~~~~w~ 104 (398)
T PLN02772 70 GTGPKPCKGYSAVVLNKDRILVIKKGSA-PDDSIWF 104 (398)
T ss_pred CCCCCCCCcceEEEECCceEEEEeCCCC-CccceEE
Confidence 346666667777777544443322111 1455555
No 78
>cd03772 MATH_HAUSP Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence playing an important role in the p53-MDM2 pathway. It contains an N-terminal TRAF-like domain and a C-terminal catalytic protease (C19 family) domain. The tumor suppressor p53 protein is a transcription factor that responds to many cellular stress signals and is regulated primarily through ubiquitylation and subsequent degradation. MDM2 is a RING-finger E3 ubiquitin ligase that promotes p53 ubiquitinylation. p53 and MDM2 bind to the same site in the N-terminal TRAF-like domain of HAUSP in a mutually exclusive manner. HAUSP also interacts with the Epstein-Barr nuclear antigen 1 (EBNA1) protein of the Epstein-Barr virus (EBV), which efficiently immortalizes infected cells predisposing the host to a variety of cancers. EBNA1
Probab=48.57 E-value=7.3 Score=35.67 Aligned_cols=34 Identities=12% Similarity=0.199 Sum_probs=28.3
Q ss_pred hhhhhhhhhhhhhhhhcCCcccccceeecccccc
Q 007950 63 ADWARNRKRRREEIKKDTVDVLVQREQILQCNMP 96 (583)
Q Consensus 63 ~~w~~~~~~~r~~~~~~~~~~~~~~~~~~~c~~~ 96 (583)
.+||+.+|++|+++++..-.++.+|+.+|+|.+.
T Consensus 98 ~~~G~~~fi~~~~L~~~~sgyl~~D~l~Ie~~V~ 131 (137)
T cd03772 98 NDWGFSNFMTWSEVTDPEKGFIEDDTITLEVYVQ 131 (137)
T ss_pred CCccchheeEHHHhcCCCCCcEECCEEEEEEEEE
Confidence 3699999999999975444579999999999774
No 79
>cd00270 MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link cell surface TNFRs and receptors of the interleukin-1/Toll-like family to downstream kinase signaling cascades which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. There are at least six mammalian and three Drosophila proteins containing TRAF domains. The mammalian TRAFs display varying expression profiles, indicating independent and cell type-specific regulation. They display distinct, as well as overlapping functions and interactions with receptors. Most TRAFs, except TRAF1, share N-terminal homology and contain a RING domain, multiple zinc finger domains, and a TRAF domain. TRAFs form homo- and heterotrimers through its TRAF domain. The TRAF domain can be divided into a more divergent N-ter
Probab=46.21 E-value=7 Score=36.13 Aligned_cols=31 Identities=3% Similarity=0.066 Sum_probs=26.8
Q ss_pred hhhhhhhhhhhhhhhhcCCcccccceeeccccc
Q 007950 63 ADWARNRKRRREEIKKDTVDVLVQREQILQCNM 95 (583)
Q Consensus 63 ~~w~~~~~~~r~~~~~~~~~~~~~~~~~~~c~~ 95 (583)
.+||..+|++|++|++.. ++.+|+.+|+|.+
T Consensus 118 ~~~G~~~fi~~~~L~~~g--fl~dD~l~I~~~v 148 (149)
T cd00270 118 IGFGYPEFVPLEKLESRG--YVKDDTLFIKVEV 148 (149)
T ss_pred CCcCcceEeEHHHhccCC--CEeCCEEEEEEEE
Confidence 469999999999999764 6899999999965
No 80
>cd03780 MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF5 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF5 was identified as an activator of nuclear factor-kappaB and a regulator of lymphotoxin-beta receptor and CD40 signaling. Its interaction with CD40 is indirect, involving hetero-oligomerization with TRAF3. In addition, TRAF5 has been shown to associate with other TNFRs including CD27, CD30, OX40 and GITR (glucocorticoid-induced TNFR). It plays a role in modulating Th2 immune responses (driven by OX40 costimulation) and T-cell activation (triggered by GITR). It is also involved in osteoclastogenesis. TRAF5 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more dive
Probab=44.27 E-value=9.6 Score=35.96 Aligned_cols=32 Identities=6% Similarity=0.009 Sum_probs=26.9
Q ss_pred hhhhhhhhhhhhhhhcCCcccccceeeccccc
Q 007950 64 DWARNRKRRREEIKKDTVDVLVQREQILQCNM 95 (583)
Q Consensus 64 ~w~~~~~~~r~~~~~~~~~~~~~~~~~~~c~~ 95 (583)
.||..+|++|++||++...++.+|++.|+|.+
T Consensus 116 ~~G~~~Fi~~~~Le~s~~~ylkdD~~~Ik~~v 147 (148)
T cd03780 116 ASGCPRFVAHSVLENAKNTYIKDDTLFLKVAV 147 (148)
T ss_pred CcChhheeEHHHhhcccCCcCcCCEEEEEEEE
Confidence 48999999999999874457999999998753
No 81
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=36.24 E-value=33 Score=33.30 Aligned_cols=51 Identities=14% Similarity=0.173 Sum_probs=44.9
Q ss_pred CCCHHHHHHHHhhhccCccccCCcchHHHHHHHhchhhhcchhhhhhhcccc
Q 007950 218 ASEEAALMELLNFMYSSTLSTTTPTALLDVLMAADKFEVASCMRYCSRLLRN 269 (583)
Q Consensus 218 ~~~~~~f~~lL~fiYtg~l~i~~~~~v~~lL~aAd~~~v~~l~~~C~~~L~~ 269 (583)
+-+|..|.-+|+|+-.|++.++. -.=..+|.-|++|.+++|.+...+.+.+
T Consensus 70 DRDP~~FgpvLNylRhgklvl~~-l~eeGvL~EAefyn~~~li~likd~i~d 120 (210)
T KOG2715|consen 70 DRDPFYFGPVLNYLRHGKLVLNK-LSEEGVLEEAEFYNDPSLIQLIKDRIQD 120 (210)
T ss_pred ccCcchHHHHHHHHhcchhhhhh-hhhhccchhhhccCChHHHHHHHHHHHH
Confidence 78999999999999999999987 5667899999999999998877776664
No 82
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=35.65 E-value=29 Score=29.37 Aligned_cols=25 Identities=20% Similarity=0.460 Sum_probs=21.9
Q ss_pred HHHHHHhchhhhcchhhhhhhcccc
Q 007950 245 LDVLMAADKFEVASCMRYCSRLLRN 269 (583)
Q Consensus 245 ~~lL~aAd~~~v~~l~~~C~~~L~~ 269 (583)
.+++..|+.|+.+.|...|.+|+..
T Consensus 2 ~~i~~~A~~~~~~~L~~~~~~~i~~ 26 (103)
T PF07707_consen 2 LSIYRLAEKYGLEELAEACLRFIAK 26 (103)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred hhHHHHHHHcChHHHHHHHHHHHHH
Confidence 5788999999999999999999986
No 83
>cd03777 MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF3 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF3 was first described as a molecule that binds the cytoplasmic tail of CD40. However, it is not required for CD40 signaling. More recently, TRAF3 has been identified as a key regulator of type I interferon (IFN) production and the mammalian innate antiviral immunity. It mediates IFN responses in Toll-like receptor (TLR)-dependent as well as TLR-independent viral recognition pathways. It is also a key element in immunological homeostasis through its regulation of the anti-inflammatory cytokine interleukin-10. TRAF3 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more divergent N-terminal al
Probab=34.27 E-value=22 Score=34.93 Aligned_cols=30 Identities=3% Similarity=-0.047 Sum_probs=26.4
Q ss_pred hhhhhhhhhhhhhhhcCCcccccceeeccccc
Q 007950 64 DWARNRKRRREEIKKDTVDVLVQREQILQCNM 95 (583)
Q Consensus 64 ~w~~~~~~~r~~~~~~~~~~~~~~~~~~~c~~ 95 (583)
.||..+|++|++|++.. ++.+|+++|+|.+
T Consensus 154 ~~G~~~Fi~~~~Le~~~--ylkdD~l~Irv~v 183 (186)
T cd03777 154 ASGCPVFVAQTVLENGT--YIKDDTIFIKVIV 183 (186)
T ss_pred CCCchheeEHHHhccCC--cEeCCEEEEEEEE
Confidence 48999999999999876 5899999999855
No 84
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=33.41 E-value=92 Score=32.89 Aligned_cols=13 Identities=23% Similarity=0.784 Sum_probs=10.6
Q ss_pred eecCCceEEECCe
Q 007950 560 FMADDSIYFINGN 572 (583)
Q Consensus 560 ~~~~~~~~~i~~~ 572 (583)
+.-+|++|||||-
T Consensus 161 lar~D~VYilGGH 173 (337)
T PF03089_consen 161 LARNDCVYILGGH 173 (337)
T ss_pred EecCceEEEEccE
Confidence 4457899999995
No 85
>KOG2723 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=22.87 E-value=1.4e+02 Score=30.35 Aligned_cols=67 Identities=10% Similarity=0.170 Sum_probs=47.3
Q ss_pred HhhcCCC--CCCcceEEEecCCCCHHHHHHHHhhhccCccccCC-cchHHHHHHHhchhhhcchhhhhhhccc
Q 007950 199 LFSNGMR--ESEQRYVTLRIHASEEAALMELLNFMYSSTLSTTT-PTALLDVLMAADKFEVASCMRYCSRLLR 268 (583)
Q Consensus 199 ~f~~~~~--es~~~~v~l~~~~~~~~~f~~lL~fiYtg~l~i~~-~~~v~~lL~aAd~~~v~~l~~~C~~~L~ 268 (583)
||++... .......-| +=+-..|+-+|+|+-|..+.+.. ..++..|..-|++|+++.+..++.+-.+
T Consensus 38 ~f~~~~~~~~d~~g~~fI---DRDG~lFRyvL~~LRt~~l~lpe~f~e~~~L~rEA~f~~l~~~~~~l~~~~~ 107 (221)
T KOG2723|consen 38 MFSGELPLLRDSKGRYFI---DRDGFLFRYVLDYLRTKALLLPEDFAEVERLVREAEFFQLEAPVTYLLNSGQ 107 (221)
T ss_pred hcCCCCCccccccccEEE---cCCcchHHHHHHHhcccccccchhhhhHHHHHHHHHHHccccHHHHHhcccc
Confidence 7776221 122344555 67778999999999996665543 2468899999999999988876655444
No 86
>cd03775 MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast. Ubp21p is a deubiquitinating enzyme that may be involved in the regulation of the protein kinase Prp4p, which controls the formation of active spliceosomes. Members of this family are similar to human HAUSP (Herpesvirus-associated ubiquitin-specific protease) in that they contain an N-terminal MATH domain and a C-terminal catalytic protease (C19 family) domain. HAUSP is also an ubiquitin-specific protease that specifically catalyzes the deubiquitylation of p53 and MDM2. The MATH domain of HAUSP contains the binding site for p53 and MDM2. Similarly, the MATH domain of members in this family may be involved in substrate binding.
Probab=22.50 E-value=42 Score=30.53 Aligned_cols=32 Identities=16% Similarity=0.197 Sum_probs=24.6
Q ss_pred hhhhhhhhhhhhhhhhc----CCcccccceeecccc
Q 007950 63 ADWARNRKRRREEIKKD----TVDVLVQREQILQCN 94 (583)
Q Consensus 63 ~~w~~~~~~~r~~~~~~----~~~~~~~~~~~~~c~ 94 (583)
.+||+.+|++|++|++- +..++.+|+.+|++-
T Consensus 97 ~~wG~~~fi~~~~L~~~~~~~~~g~l~nD~l~I~~~ 132 (134)
T cd03775 97 KDWGFTRFIELRKLAHRTPDKPSPFLENGELNITVY 132 (134)
T ss_pred CCCChhHcccHHHHcccccCCCCceeECCEEEEEEE
Confidence 36999999999999842 224788898888653
No 87
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=21.55 E-value=82 Score=26.78 Aligned_cols=30 Identities=20% Similarity=0.339 Sum_probs=27.4
Q ss_pred chhhhhhcccchhhhhhhccHHHHHHHHHHHHHh
Q 007950 274 CESALLYLDLPSSVLMADAVQPLTDTAKQFLAAR 307 (583)
Q Consensus 274 ~~n~~~~l~~a~~~~~~~~~~~L~~~~~~fi~~~ 307 (583)
.+++..++.+|+.+ .++.|.+.|.+++.++
T Consensus 81 ~~~~~~ll~lA~~~----~~~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 81 DENVEELLELADKL----QIPELKKACEKFLQES 110 (111)
T ss_dssp TTTHHHHHHHHHHT----TBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh----CcHHHHHHHHHHHHhC
Confidence 78899999999988 7899999999999876
No 88
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=20.99 E-value=72 Score=35.79 Aligned_cols=45 Identities=16% Similarity=0.166 Sum_probs=37.1
Q ss_pred CCCchhhhhhcccchhhhhhhccHHHHHHHHHHHHHhcccccccchhhhCCCH
Q 007950 271 PMTCESALLYLDLPSSVLMADAVQPLTDTAKQFLAARYKDISKFQEEVLNLPL 323 (583)
Q Consensus 271 ~l~~~n~~~~l~~a~~~~~~~~~~~L~~~~~~fi~~~f~~v~~~~~~f~~L~~ 323 (583)
.+..+|++.++..|+.| .++.|++.|.+||..+.... .+|+.|+.
T Consensus 184 ~~~~dtvi~tl~~AkKY----~VpaLer~CVkflr~~l~~~----naf~~L~q 228 (521)
T KOG2075|consen 184 KLAADTVITTLYAAKKY----LVPALERQCVKFLRKNLMAD----NAFLELFQ 228 (521)
T ss_pred hhhHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHhcCCh----HHHHHHHH
Confidence 57899999999999999 78999999999999876553 45555554
Done!