Query 007951
Match_columns 583
No_of_seqs 536 out of 1974
Neff 5.0
Searched_HMMs 46136
Date Thu Mar 28 17:30:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007951.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007951hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK05225 ketol-acid reductoiso 100.0 4.7E-90 1E-94 735.7 33.4 437 71-554 1-474 (487)
2 COG0059 IlvC Ketol-acid reduct 100.0 1.7E-79 3.6E-84 623.6 28.5 315 99-442 8-330 (338)
3 PRK13403 ketol-acid reductoiso 100.0 3E-73 6.5E-78 588.4 30.4 309 104-441 10-326 (335)
4 PRK05479 ketol-acid reductoiso 100.0 4.4E-68 9.6E-73 553.7 31.7 310 105-442 12-329 (330)
5 TIGR00465 ilvC ketol-acid redu 100.0 5.7E-65 1.2E-69 528.0 31.5 307 108-442 1-314 (314)
6 PF07991 IlvN: Acetohydroxy ac 100.0 1.5E-39 3.3E-44 308.2 15.2 160 108-287 2-162 (165)
7 PF01450 IlvC: Acetohydroxy ac 100.0 3.2E-35 6.9E-40 275.3 8.6 141 294-442 1-145 (145)
8 COG0345 ProC Pyrroline-5-carbo 100.0 1.8E-32 3.9E-37 278.9 21.9 218 112-366 2-230 (266)
9 PRK12491 pyrroline-5-carboxyla 100.0 3.2E-31 6.9E-36 270.4 22.4 219 112-366 3-233 (272)
10 PRK06928 pyrroline-5-carboxyla 100.0 5.3E-28 1.1E-32 246.6 21.2 220 111-366 1-234 (277)
11 PTZ00431 pyrroline carboxylate 100.0 2E-27 4.4E-32 240.1 22.1 213 112-366 4-226 (260)
12 PRK07679 pyrroline-5-carboxyla 99.9 1.5E-25 3.2E-30 228.0 23.5 219 112-365 4-234 (279)
13 PRK07634 pyrroline-5-carboxyla 99.9 2E-25 4.3E-30 221.1 22.3 220 112-366 5-234 (245)
14 KOG3124 Pyrroline-5-carboxylat 99.9 3.1E-26 6.7E-31 230.0 15.9 219 112-366 1-231 (267)
15 PLN02688 pyrroline-5-carboxyla 99.9 5.9E-25 1.3E-29 220.8 23.9 218 112-365 1-229 (266)
16 PRK11880 pyrroline-5-carboxyla 99.9 4.5E-24 9.7E-29 214.5 23.1 218 112-365 3-230 (267)
17 PRK07680 late competence prote 99.9 4E-24 8.7E-29 216.8 22.2 218 112-366 1-231 (273)
18 PRK05225 ketol-acid reductoiso 99.9 3.4E-24 7.3E-29 230.6 9.5 131 302-443 352-485 (487)
19 TIGR00112 proC pyrroline-5-car 99.9 1.6E-22 3.5E-27 203.2 19.4 197 141-366 10-213 (245)
20 PRK06476 pyrroline-5-carboxyla 99.9 6.7E-22 1.5E-26 198.8 21.3 215 112-366 1-223 (258)
21 PRK06545 prephenate dehydrogen 99.8 4.2E-19 9.1E-24 187.6 22.1 219 112-350 1-221 (359)
22 PF01450 IlvC: Acetohydroxy ac 99.8 2.3E-20 5E-25 175.2 2.4 123 451-576 17-142 (145)
23 COG0287 TyrA Prephenate dehydr 99.8 1.8E-17 3.9E-22 170.6 19.8 195 112-329 4-201 (279)
24 PRK07417 arogenate dehydrogena 99.7 9.2E-17 2E-21 163.9 18.2 187 112-320 1-187 (279)
25 PRK08655 prephenate dehydrogen 99.7 9.3E-16 2E-20 166.6 25.0 198 112-339 1-203 (437)
26 PRK08507 prephenate dehydrogen 99.7 5.2E-16 1.1E-20 157.8 21.0 194 112-334 1-202 (275)
27 PRK07502 cyclohexadienyl dehyd 99.7 2.1E-15 4.5E-20 155.6 21.5 186 112-321 7-200 (307)
28 PLN02256 arogenate dehydrogena 99.7 2.3E-15 5E-20 156.6 18.8 165 112-300 37-210 (304)
29 PRK14806 bifunctional cyclohex 99.7 5.4E-15 1.2E-19 168.9 21.6 215 112-350 4-226 (735)
30 PF02153 PDH: Prephenate dehyd 99.6 2.8E-15 6.1E-20 151.9 15.7 189 126-332 1-191 (258)
31 PRK08818 prephenate dehydrogen 99.6 2.1E-14 4.6E-19 153.1 17.3 153 112-300 5-161 (370)
32 PRK12557 H(2)-dependent methyl 99.6 1.5E-13 3.3E-18 145.3 23.0 250 112-394 1-297 (342)
33 PRK06130 3-hydroxybutyryl-CoA 99.6 2.6E-13 5.6E-18 139.9 21.2 217 111-361 4-244 (311)
34 PLN02712 arogenate dehydrogena 99.5 2.6E-13 5.6E-18 154.5 20.8 194 107-330 366-564 (667)
35 TIGR01724 hmd_rel H2-forming N 99.5 1.3E-12 2.7E-17 136.7 23.3 226 112-364 1-262 (341)
36 PRK11199 tyrA bifunctional cho 99.5 9E-13 2E-17 140.7 21.1 181 110-336 97-279 (374)
37 PLN02712 arogenate dehydrogena 99.5 3.9E-13 8.5E-18 153.0 18.4 168 112-300 53-226 (667)
38 PRK05808 3-hydroxybutyryl-CoA 99.5 7.8E-13 1.7E-17 134.9 14.9 153 111-287 3-177 (282)
39 PRK07531 bifunctional 3-hydrox 99.4 1.1E-11 2.4E-16 136.7 19.8 217 111-364 4-252 (495)
40 COG2084 MmsB 3-hydroxyisobutyr 99.4 9.6E-12 2.1E-16 128.7 17.2 152 112-287 1-157 (286)
41 PLN02545 3-hydroxybutyryl-CoA 99.4 8.1E-12 1.8E-16 128.2 15.9 153 111-287 4-178 (295)
42 PF03807 F420_oxidored: NADP o 99.4 1.7E-12 3.7E-17 111.2 9.0 90 113-213 1-96 (96)
43 PRK13403 ketol-acid reductoiso 99.3 2.4E-12 5.2E-17 135.1 9.4 113 451-564 198-327 (335)
44 TIGR01915 npdG NADPH-dependent 99.3 1.7E-11 3.6E-16 121.2 14.9 156 112-287 1-183 (219)
45 PRK15059 tartronate semialdehy 99.3 6E-11 1.3E-15 122.7 18.9 194 112-336 1-202 (292)
46 PRK00094 gpsA NAD(P)H-dependen 99.3 4.5E-11 9.7E-16 122.9 17.6 149 111-286 1-172 (325)
47 PF03446 NAD_binding_2: NAD bi 99.3 7.4E-12 1.6E-16 118.4 10.2 149 111-286 1-155 (163)
48 PRK05479 ketol-acid reductoiso 99.3 4.9E-12 1.1E-16 133.3 8.9 111 452-563 201-328 (330)
49 PRK08293 3-hydroxybutyryl-CoA 99.3 2.9E-10 6.3E-15 116.7 21.3 213 111-363 3-248 (287)
50 PRK12490 6-phosphogluconate de 99.3 1.3E-10 2.8E-15 120.1 18.6 198 112-339 1-210 (299)
51 TIGR00872 gnd_rel 6-phosphoglu 99.3 3.7E-10 8.1E-15 116.7 21.0 147 112-286 1-153 (298)
52 PRK15461 NADH-dependent gamma- 99.3 2.1E-10 4.6E-15 118.4 17.6 196 112-337 2-205 (296)
53 PRK06035 3-hydroxyacyl-CoA deh 99.2 1.8E-10 4E-15 118.2 16.6 152 111-287 3-180 (291)
54 TIGR01505 tartro_sem_red 2-hyd 99.2 4.1E-10 8.9E-15 115.4 18.5 191 113-337 1-203 (291)
55 PRK09260 3-hydroxybutyryl-CoA 99.2 2.8E-10 6.1E-15 116.7 16.5 149 111-287 1-176 (288)
56 PRK14618 NAD(P)H-dependent gly 99.2 1.7E-10 3.7E-15 120.2 14.2 150 112-287 5-172 (328)
57 PLN02350 phosphogluconate dehy 99.2 4.7E-10 1E-14 124.1 17.9 152 111-286 6-167 (493)
58 TIGR01692 HIBADH 3-hydroxyisob 99.2 7E-10 1.5E-14 113.9 18.1 193 116-336 1-199 (288)
59 PRK06129 3-hydroxyacyl-CoA deh 99.2 1.5E-09 3.2E-14 112.6 20.5 194 111-338 2-219 (308)
60 PF10727 Rossmann-like: Rossma 99.2 4.7E-11 1E-15 110.2 7.4 114 112-237 11-127 (127)
61 PRK09599 6-phosphogluconate de 99.2 1.6E-09 3.4E-14 112.1 19.3 147 112-286 1-154 (301)
62 PRK07530 3-hydroxybutyryl-CoA 99.2 7.9E-10 1.7E-14 113.5 16.5 152 111-287 4-178 (292)
63 PRK11559 garR tartronate semia 99.2 1.3E-09 2.8E-14 111.7 17.8 149 112-287 3-158 (296)
64 TIGR00873 gnd 6-phosphoglucona 99.1 2E-09 4.2E-14 118.5 18.8 148 113-287 1-159 (467)
65 PTZ00142 6-phosphogluconate de 99.1 3.8E-09 8.3E-14 116.3 18.7 150 112-287 2-162 (470)
66 PRK08268 3-hydroxy-acyl-CoA de 99.1 7.1E-09 1.5E-13 115.2 19.7 150 109-287 5-181 (507)
67 PRK12439 NAD(P)H-dependent gly 99.1 7.9E-09 1.7E-13 109.0 18.8 198 112-344 8-228 (341)
68 COG2085 Predicted dinucleotide 99.0 3.3E-09 7.1E-14 105.5 14.4 155 111-287 1-174 (211)
69 TIGR03026 NDP-sugDHase nucleot 99.0 1.8E-08 3.9E-13 108.7 20.2 201 112-337 1-242 (411)
70 PRK07066 3-hydroxybutyryl-CoA 99.0 6.1E-09 1.3E-13 109.7 16.1 154 110-287 6-178 (321)
71 PTZ00345 glycerol-3-phosphate 99.0 5.6E-08 1.2E-12 104.1 22.2 215 99-350 2-252 (365)
72 KOG2380 Prephenate dehydrogena 99.0 1.4E-08 3E-13 106.8 15.6 164 112-300 53-226 (480)
73 PRK14619 NAD(P)H-dependent gly 99.0 2.1E-08 4.5E-13 104.1 16.9 79 109-212 3-82 (308)
74 PLN02858 fructose-bisphosphate 98.9 3E-08 6.5E-13 121.2 20.5 201 112-340 325-534 (1378)
75 TIGR00465 ilvC ketol-acid redu 98.9 2.9E-09 6.3E-14 111.8 9.0 111 450-561 185-311 (314)
76 PRK06444 prephenate dehydrogen 98.9 3E-08 6.6E-13 97.9 15.1 127 112-301 1-128 (197)
77 PRK11064 wecC UDP-N-acetyl-D-m 98.9 1.6E-07 3.4E-12 102.0 22.0 201 111-336 3-245 (415)
78 TIGR02279 PaaC-3OHAcCoADH 3-hy 98.9 6.1E-08 1.3E-12 107.8 19.2 153 110-287 4-179 (503)
79 PRK06522 2-dehydropantoate 2-r 98.9 7.5E-08 1.6E-12 98.1 17.9 153 112-287 1-168 (304)
80 PRK07819 3-hydroxybutyryl-CoA 98.9 4.4E-08 9.5E-13 101.2 16.1 152 111-287 5-181 (286)
81 COG0059 IlvC Ketol-acid reduct 98.9 5.6E-09 1.2E-13 108.4 8.4 112 451-563 201-329 (338)
82 PF01210 NAD_Gly3P_dh_N: NAD-d 98.9 1.1E-08 2.3E-13 96.6 9.4 95 113-214 1-106 (157)
83 PRK14620 NAD(P)H-dependent gly 98.8 2.4E-07 5.2E-12 96.6 20.0 97 112-215 1-110 (326)
84 PLN02858 fructose-bisphosphate 98.8 9.8E-08 2.1E-12 116.8 19.5 200 112-340 5-214 (1378)
85 KOG0409 Predicted dehydrogenas 98.8 7.4E-08 1.6E-12 100.1 15.2 149 112-287 36-192 (327)
86 COG4007 Predicted dehydrogenas 98.8 3.4E-07 7.5E-12 93.5 18.4 225 112-364 2-263 (340)
87 PRK12921 2-dehydropantoate 2-r 98.8 3.9E-07 8.4E-12 93.2 19.2 96 112-215 1-106 (305)
88 PF02737 3HCDH_N: 3-hydroxyacy 98.7 2.8E-07 6.2E-12 89.2 15.4 150 113-287 1-173 (180)
89 PRK13243 glyoxylate reductase; 98.7 3.7E-08 8E-13 104.0 9.8 136 106-268 146-290 (333)
90 PRK08229 2-dehydropantoate 2-r 98.7 2.5E-07 5.5E-12 96.4 15.9 96 112-215 3-111 (341)
91 COG0240 GpsA Glycerol-3-phosph 98.7 4.7E-07 1E-11 95.6 17.6 200 112-344 2-222 (329)
92 PRK11730 fadB multifunctional 98.7 4E-06 8.6E-11 97.0 26.8 347 109-510 311-694 (715)
93 PF02826 2-Hacid_dh_C: D-isome 98.7 2E-08 4.4E-13 96.6 6.8 106 95-213 19-129 (178)
94 PRK11861 bifunctional prephena 98.7 1.3E-07 2.8E-12 108.4 14.5 135 182-324 1-136 (673)
95 COG0111 SerA Phosphoglycerate 98.7 7.5E-08 1.6E-12 101.7 11.6 149 95-268 126-284 (324)
96 TIGR02437 FadB fatty oxidation 98.7 4.1E-06 8.9E-11 96.9 26.4 349 109-510 311-694 (714)
97 TIGR03376 glycerol3P_DH glycer 98.7 6.6E-07 1.4E-11 95.2 18.0 98 113-216 1-121 (342)
98 PRK07574 formate dehydrogenase 98.7 8.1E-08 1.8E-12 103.6 10.8 158 94-275 173-343 (385)
99 PRK12480 D-lactate dehydrogena 98.7 8.9E-08 1.9E-12 101.2 10.6 116 105-237 141-265 (330)
100 PLN03139 formate dehydrogenase 98.7 9E-08 1.9E-12 103.3 10.8 158 94-275 180-350 (386)
101 PRK06436 glycerate dehydrogena 98.7 1E-07 2.3E-12 99.7 10.6 149 95-276 108-267 (303)
102 TIGR02440 FadJ fatty oxidation 98.7 4.8E-06 1.1E-10 96.1 24.7 153 110-287 303-479 (699)
103 COG1052 LdhA Lactate dehydroge 98.6 2.3E-07 5E-12 98.0 12.7 162 91-275 122-298 (324)
104 PRK08605 D-lactate dehydrogena 98.6 7.8E-08 1.7E-12 101.5 9.2 96 105-214 141-239 (332)
105 PRK08410 2-hydroxyacid dehydro 98.6 2E-07 4.4E-12 97.6 11.3 145 106-277 141-295 (311)
106 PRK15182 Vi polysaccharide bio 98.6 1.8E-06 4E-11 94.2 18.3 201 112-337 7-242 (425)
107 TIGR01723 hmd_TIGR 5,10-methen 98.6 3E-06 6.6E-11 87.5 18.6 199 159-390 124-333 (340)
108 PRK00961 H(2)-dependent methyl 98.6 2.9E-06 6.3E-11 87.5 18.1 174 159-364 126-311 (342)
109 TIGR02441 fa_ox_alpha_mit fatt 98.6 1.5E-06 3.2E-11 100.9 18.1 215 109-361 333-573 (737)
110 TIGR01327 PGDH D-3-phosphoglyc 98.6 1.4E-07 3.1E-12 105.2 9.5 149 94-268 121-279 (525)
111 PRK15409 bifunctional glyoxyla 98.6 2.1E-07 4.6E-12 98.1 9.4 156 93-274 124-294 (323)
112 PLN02928 oxidoreductase family 98.5 4.2E-07 9.1E-12 96.7 11.4 162 95-276 145-322 (347)
113 PRK13581 D-3-phosphoglycerate 98.5 1.8E-07 4E-12 104.4 9.0 147 95-268 124-280 (526)
114 PRK15469 ghrA bifunctional gly 98.5 2.5E-07 5.4E-12 97.1 9.4 147 95-268 122-277 (312)
115 cd01065 NAD_bind_Shikimate_DH 98.5 9.4E-08 2E-12 88.2 5.1 100 108-214 17-118 (155)
116 PF14748 P5CR_dimer: Pyrroline 98.5 3.6E-07 7.9E-12 81.8 8.2 67 299-366 2-74 (107)
117 PRK06932 glycerate dehydrogena 98.5 9.7E-07 2.1E-11 92.7 11.9 146 106-277 143-298 (314)
118 PRK06249 2-dehydropantoate 2-r 98.5 9E-06 2E-10 84.6 18.8 153 112-287 6-180 (313)
119 PRK11154 fadJ multifunctional 98.5 6.6E-06 1.4E-10 95.1 19.0 346 109-516 307-691 (708)
120 COG1250 FadB 3-hydroxyacyl-CoA 98.4 3.3E-06 7.1E-11 88.8 14.5 152 111-287 3-177 (307)
121 TIGR02853 spore_dpaA dipicolin 98.4 1.6E-06 3.5E-11 90.1 11.1 94 107-213 148-241 (287)
122 PRK09287 6-phosphogluconate de 98.4 5.6E-06 1.2E-10 91.4 15.7 139 122-287 1-150 (459)
123 KOG0069 Glyoxylate/hydroxypyru 98.4 1.2E-06 2.6E-11 92.9 9.8 137 86-237 136-284 (336)
124 PRK11790 D-3-phosphoglycerate 98.3 1.3E-06 2.8E-11 95.0 8.6 127 95-238 135-271 (409)
125 PRK06487 glycerate dehydrogena 98.3 1.4E-06 3.1E-11 91.5 8.3 142 106-276 144-295 (317)
126 COG1023 Gnd Predicted 6-phosph 98.3 7.8E-06 1.7E-10 83.2 13.1 149 112-286 1-154 (300)
127 PRK15057 UDP-glucose 6-dehydro 98.3 2.1E-05 4.5E-10 85.1 17.2 92 112-214 1-119 (388)
128 COG4074 Mth H2-forming N5,N10- 98.3 3.7E-05 8E-10 77.5 17.2 204 158-390 123-333 (343)
129 PF00670 AdoHcyase_NAD: S-aden 98.3 2.7E-06 5.9E-11 81.9 8.5 95 106-215 19-113 (162)
130 PRK15438 erythronate-4-phospha 98.3 2E-06 4.3E-11 92.8 8.1 88 107-211 113-206 (378)
131 PRK00257 erythronate-4-phospha 98.2 2.1E-06 4.5E-11 92.7 7.7 89 106-211 112-206 (381)
132 KOG0068 D-3-phosphoglycerate d 98.2 1.8E-05 3.8E-10 83.8 12.0 160 88-271 123-292 (406)
133 PLN02353 probable UDP-glucose 98.2 8.9E-05 1.9E-09 82.3 18.2 199 112-335 2-248 (473)
134 PTZ00075 Adenosylhomocysteinas 98.2 1E-05 2.2E-10 89.5 10.7 121 106-243 250-371 (476)
135 PLN02306 hydroxypyruvate reduc 98.1 8.5E-06 1.8E-10 88.2 9.5 150 106-274 161-329 (386)
136 PF03721 UDPG_MGDP_dh_N: UDP-g 98.1 8.4E-06 1.8E-10 79.6 8.0 95 112-214 1-122 (185)
137 PRK13304 L-aspartate dehydroge 98.1 1.8E-05 3.9E-10 81.1 10.0 91 112-213 2-94 (265)
138 PRK08306 dipicolinate synthase 98.0 2.8E-05 6.1E-10 81.1 10.7 94 106-212 148-241 (296)
139 PRK14194 bifunctional 5,10-met 98.0 1.5E-05 3.2E-10 83.7 8.4 78 106-215 155-233 (301)
140 TIGR00936 ahcY adenosylhomocys 98.0 3.4E-05 7.4E-10 84.0 11.3 93 107-215 192-285 (406)
141 PRK05708 2-dehydropantoate 2-r 98.0 0.0002 4.3E-09 74.7 16.6 153 112-287 3-170 (305)
142 PRK13302 putative L-aspartate 98.0 2.8E-05 6.1E-10 80.1 10.1 92 112-213 7-100 (271)
143 PF01408 GFO_IDH_MocA: Oxidore 98.0 5.9E-05 1.3E-09 66.6 10.0 81 112-200 1-84 (120)
144 COG1893 ApbA Ketopantoate redu 98.0 0.00033 7.2E-09 73.6 17.2 154 112-287 1-170 (307)
145 PRK05476 S-adenosyl-L-homocyst 98.0 4.5E-05 9.7E-10 83.6 10.9 92 108-215 210-302 (425)
146 PRK08269 3-hydroxybutyryl-CoA 97.9 0.00087 1.9E-08 70.6 20.0 207 122-362 1-244 (314)
147 COG0362 Gnd 6-phosphogluconate 97.9 7.6E-05 1.6E-09 80.5 11.6 148 112-287 4-163 (473)
148 PLN02494 adenosylhomocysteinas 97.9 4.2E-05 9.1E-10 84.6 9.9 122 74-214 221-343 (477)
149 cd05213 NAD_bind_Glutamyl_tRNA 97.9 4.8E-05 1E-09 79.6 9.4 96 108-212 176-273 (311)
150 PF02558 ApbA: Ketopantoate re 97.9 6.7E-05 1.5E-09 69.2 8.8 94 114-215 1-105 (151)
151 cd00401 AdoHcyase S-adenosyl-L 97.9 9.4E-05 2E-09 80.8 11.2 92 107-214 199-291 (413)
152 smart00859 Semialdhyde_dh Semi 97.8 6.4E-05 1.4E-09 67.5 8.0 97 113-214 1-101 (122)
153 PRK06141 ornithine cyclodeamin 97.7 7.3E-05 1.6E-09 78.4 7.2 85 112-209 126-216 (314)
154 PRK14188 bifunctional 5,10-met 97.7 0.00011 2.4E-09 77.1 8.1 77 107-215 155-232 (296)
155 COG5495 Uncharacterized conser 97.6 0.00072 1.6E-08 68.8 12.5 212 112-355 11-228 (289)
156 TIGR02371 ala_DH_arch alanine 97.6 0.00014 3.1E-09 76.8 7.8 94 111-214 128-224 (325)
157 COG0677 WecC UDP-N-acetyl-D-ma 97.6 0.0008 1.7E-08 72.9 13.3 199 112-337 10-249 (436)
158 PF01488 Shikimate_DH: Shikima 97.6 9.2E-05 2E-09 68.4 5.5 99 106-212 8-109 (135)
159 cd01075 NAD_bind_Leu_Phe_Val_D 97.5 0.0002 4.3E-09 70.7 7.2 71 105-187 23-94 (200)
160 PRK00045 hemA glutamyl-tRNA re 97.5 0.00017 3.6E-09 78.7 7.0 74 108-190 180-254 (423)
161 PRK14179 bifunctional 5,10-met 97.5 0.00026 5.7E-09 73.9 7.8 77 107-215 155-232 (284)
162 PRK00048 dihydrodipicolinate r 97.4 0.00065 1.4E-08 69.4 9.8 96 112-219 2-99 (257)
163 PF01113 DapB_N: Dihydrodipico 97.4 0.00059 1.3E-08 62.4 7.4 113 112-238 1-123 (124)
164 PRK07340 ornithine cyclodeamin 97.3 0.00055 1.2E-08 71.7 7.8 91 112-215 126-220 (304)
165 COG2423 Predicted ornithine cy 97.3 0.00068 1.5E-08 72.2 8.3 95 110-214 129-227 (330)
166 TIGR01035 hemA glutamyl-tRNA r 97.3 0.00045 9.7E-09 75.4 6.8 75 107-190 177-252 (417)
167 PRK13303 L-aspartate dehydroge 97.3 0.0013 2.9E-08 67.5 9.5 90 112-213 2-94 (265)
168 PRK06223 malate dehydrogenase; 97.2 0.0023 5.1E-08 66.4 11.0 69 111-186 2-78 (307)
169 PRK08618 ornithine cyclodeamin 97.2 0.0012 2.6E-08 69.6 8.7 92 112-215 128-224 (325)
170 PF01118 Semialdhyde_dh: Semia 97.2 0.001 2.2E-08 60.1 7.0 92 113-214 1-99 (121)
171 PLN00203 glutamyl-tRNA reducta 97.2 0.0013 2.9E-08 73.9 9.4 85 108-199 264-353 (519)
172 PRK06407 ornithine cyclodeamin 97.2 0.00083 1.8E-08 70.4 7.2 94 111-215 117-215 (301)
173 PRK07589 ornithine cyclodeamin 97.2 0.00086 1.9E-08 71.8 7.3 97 110-215 128-228 (346)
174 KOG2304 3-hydroxyacyl-CoA dehy 97.2 0.0015 3.2E-08 66.5 8.5 153 111-287 11-191 (298)
175 TIGR00518 alaDH alanine dehydr 97.1 0.0019 4.1E-08 69.6 9.5 98 108-212 165-267 (370)
176 TIGR01921 DAP-DH diaminopimela 97.1 0.0012 2.7E-08 70.1 7.8 87 112-211 4-90 (324)
177 TIGR00036 dapB dihydrodipicoli 97.1 0.004 8.7E-08 64.1 11.1 94 112-217 2-105 (266)
178 cd01078 NAD_bind_H4MPT_DH NADP 97.1 0.0011 2.4E-08 64.2 6.5 96 107-211 25-128 (194)
179 TIGR01763 MalateDH_bact malate 97.1 0.0033 7.2E-08 66.0 10.4 66 112-187 2-78 (305)
180 PRK06046 alanine dehydrogenase 97.1 0.0014 3E-08 69.2 7.5 91 112-214 130-225 (326)
181 TIGR02992 ectoine_eutC ectoine 97.0 0.0013 2.9E-08 69.4 7.1 89 112-211 130-223 (326)
182 TIGR03215 ac_ald_DH_ac acetald 97.0 0.005 1.1E-07 64.4 11.0 92 112-214 2-97 (285)
183 PRK04207 glyceraldehyde-3-phos 97.0 0.0034 7.3E-08 67.0 9.9 95 112-214 2-111 (341)
184 PRK13940 glutamyl-tRNA reducta 97.0 0.0012 2.6E-08 72.3 6.5 74 107-189 178-253 (414)
185 COG0673 MviM Predicted dehydro 97.0 0.0025 5.4E-08 66.0 8.4 86 112-209 4-95 (342)
186 PF02423 OCD_Mu_crystall: Orni 97.0 0.00076 1.7E-08 70.9 4.7 94 112-214 129-226 (313)
187 KOG2711 Glycerol-3-phosphate d 97.0 0.048 1E-06 58.5 17.8 105 112-216 22-144 (372)
188 PRK06823 ornithine cyclodeamin 97.0 0.002 4.3E-08 68.1 7.6 95 110-215 127-225 (315)
189 PRK08300 acetaldehyde dehydrog 96.9 0.0058 1.3E-07 64.5 10.8 92 112-214 5-103 (302)
190 COG1712 Predicted dinucleotide 96.9 0.0047 1E-07 62.8 9.6 92 112-214 1-94 (255)
191 cd01080 NAD_bind_m-THF_DH_Cycl 96.9 0.0023 5E-08 62.0 7.0 76 106-212 40-116 (168)
192 TIGR00507 aroE shikimate 5-deh 96.9 0.0013 2.9E-08 67.3 5.7 93 108-211 115-213 (270)
193 COG0373 HemA Glutamyl-tRNA red 96.8 0.0021 4.5E-08 70.4 6.8 71 108-187 176-247 (414)
194 PF13380 CoA_binding_2: CoA bi 96.8 0.0072 1.6E-07 54.9 8.9 86 112-214 1-90 (116)
195 cd05291 HicDH_like L-2-hydroxy 96.8 0.007 1.5E-07 63.3 9.8 67 112-188 1-78 (306)
196 PRK00258 aroE shikimate 5-dehy 96.8 0.002 4.4E-08 66.4 5.7 77 107-191 120-198 (278)
197 TIGR00745 apbA_panE 2-dehydrop 96.7 0.037 8E-07 56.1 14.6 86 121-215 1-97 (293)
198 KOG2305 3-hydroxyacyl-CoA dehy 96.7 0.036 7.8E-07 56.8 14.0 205 112-342 4-238 (313)
199 cd05311 NAD_bind_2_malic_enz N 96.7 0.0071 1.5E-07 61.0 9.1 93 107-212 22-128 (226)
200 KOG2653 6-phosphogluconate deh 96.7 0.0021 4.5E-08 68.9 5.3 93 112-212 7-105 (487)
201 PRK06199 ornithine cyclodeamin 96.7 0.0033 7.2E-08 68.1 6.8 90 110-209 154-256 (379)
202 PTZ00117 malate dehydrogenase; 96.7 0.0091 2E-07 63.1 9.9 69 108-186 3-81 (319)
203 PRK00436 argC N-acetyl-gamma-g 96.6 0.0089 1.9E-07 63.8 9.6 95 112-214 3-101 (343)
204 COG0499 SAM1 S-adenosylhomocys 96.6 0.0045 9.7E-08 66.6 7.0 93 107-215 206-299 (420)
205 PRK14175 bifunctional 5,10-met 96.5 0.006 1.3E-07 63.9 7.4 75 107-212 155-230 (286)
206 cd05292 LDH_2 A subgroup of L- 96.5 0.012 2.6E-07 61.8 9.5 70 112-188 1-77 (308)
207 PTZ00082 L-lactate dehydrogena 96.5 0.013 2.8E-07 62.1 9.8 66 112-186 7-82 (321)
208 COG1004 Ugd Predicted UDP-gluc 96.5 0.01 2.2E-07 64.7 8.9 90 112-209 1-117 (414)
209 PF02629 CoA_binding: CoA bind 96.5 0.0057 1.2E-07 53.4 5.8 89 112-212 4-95 (96)
210 PRK09310 aroDE bifunctional 3- 96.5 0.006 1.3E-07 67.9 7.4 74 107-190 329-402 (477)
211 PRK08291 ectoine utilization p 96.5 0.0062 1.3E-07 64.5 7.1 88 112-210 133-225 (330)
212 PRK12549 shikimate 5-dehydroge 96.5 0.0065 1.4E-07 63.2 7.1 74 108-190 125-204 (284)
213 PRK14189 bifunctional 5,10-met 96.5 0.0061 1.3E-07 63.9 6.8 75 107-212 155-230 (285)
214 COG0569 TrkA K+ transport syst 96.4 0.017 3.6E-07 58.2 9.5 83 112-200 1-88 (225)
215 cd05191 NAD_bind_amino_acid_DH 96.4 0.014 3E-07 49.9 7.6 66 106-211 19-85 (86)
216 PF00056 Ldh_1_N: lactate/mala 96.4 0.017 3.7E-07 54.0 8.9 67 112-186 1-77 (141)
217 PRK06718 precorrin-2 dehydroge 96.4 0.015 3.3E-07 57.6 9.0 84 107-199 7-91 (202)
218 PRK09496 trkA potassium transp 96.4 0.017 3.8E-07 62.5 10.2 92 112-210 1-98 (453)
219 PRK13301 putative L-aspartate 96.4 0.019 4.2E-07 59.6 9.8 92 112-214 3-96 (267)
220 PRK11579 putative oxidoreducta 96.4 0.015 3.3E-07 61.4 9.2 84 112-209 5-92 (346)
221 PF02254 TrkA_N: TrkA-N domain 96.4 0.037 8E-07 48.7 10.2 94 114-214 1-99 (116)
222 TIGR01850 argC N-acetyl-gamma- 96.3 0.019 4.2E-07 61.3 9.6 95 112-214 1-101 (346)
223 COG0686 Ald Alanine dehydrogen 96.3 0.011 2.4E-07 62.7 7.4 128 112-246 169-308 (371)
224 COG1748 LYS9 Saccharopine dehy 96.3 0.013 2.9E-07 63.8 8.2 79 111-196 1-86 (389)
225 cd01339 LDH-like_MDH L-lactate 96.2 0.019 4E-07 59.8 9.0 64 114-186 1-74 (300)
226 PRK14192 bifunctional 5,10-met 96.2 0.013 2.8E-07 61.3 7.4 75 106-211 155-230 (283)
227 PRK10206 putative oxidoreducta 96.2 0.016 3.5E-07 61.5 8.2 87 112-208 2-91 (344)
228 TIGR01809 Shik-DH-AROM shikima 96.2 0.01 2.2E-07 61.6 6.5 76 108-190 123-202 (282)
229 TIGR02717 AcCoA-syn-alpha acet 96.1 0.017 3.8E-07 63.7 8.4 90 108-215 5-100 (447)
230 PRK04148 hypothetical protein; 96.0 0.063 1.4E-06 50.6 10.2 92 109-209 16-108 (134)
231 KOG1370 S-adenosylhomocysteine 95.9 0.027 5.8E-07 59.7 8.0 125 72-215 179-304 (434)
232 PRK05678 succinyl-CoA syntheta 95.9 0.056 1.2E-06 56.8 10.4 116 112-243 9-128 (291)
233 PRK10792 bifunctional 5,10-met 95.8 0.03 6.4E-07 58.8 7.9 75 107-212 156-231 (285)
234 PRK00066 ldh L-lactate dehydro 95.7 0.063 1.4E-06 56.8 10.2 66 112-187 7-82 (315)
235 COG2344 AT-rich DNA-binding pr 95.7 0.025 5.3E-07 56.3 6.5 116 100-236 74-194 (211)
236 TIGR00561 pntA NAD(P) transhyd 95.7 0.039 8.4E-07 62.2 8.8 94 112-212 165-284 (511)
237 PRK06719 precorrin-2 dehydroge 95.6 0.039 8.5E-07 52.7 7.5 87 101-200 5-92 (157)
238 cd05297 GH4_alpha_glucosidase_ 95.6 0.019 4.1E-07 63.0 6.0 82 112-196 1-92 (423)
239 PF13460 NAD_binding_10: NADH( 95.6 0.1 2.2E-06 49.0 10.1 66 114-188 1-70 (183)
240 PLN02819 lysine-ketoglutarate 95.6 0.026 5.6E-07 68.3 7.5 83 112-197 570-667 (1042)
241 PRK05472 redox-sensing transcr 95.6 0.017 3.7E-07 57.4 5.0 81 112-199 85-167 (213)
242 PRK14982 acyl-ACP reductase; P 95.5 0.026 5.6E-07 60.6 6.6 94 106-212 151-246 (340)
243 cd00650 LDH_MDH_like NAD-depen 95.5 0.07 1.5E-06 54.5 9.4 65 114-186 1-78 (263)
244 cd05212 NAD_bind_m-THF_DH_Cycl 95.5 0.046 1E-06 51.6 7.4 74 107-211 25-99 (140)
245 cd01079 NAD_bind_m-THF_DH NAD 95.5 0.033 7.3E-07 55.5 6.6 92 106-212 58-156 (197)
246 PF13241 NAD_binding_7: Putati 95.5 0.043 9.3E-07 48.5 6.6 76 107-197 4-79 (103)
247 COG0169 AroE Shikimate 5-dehyd 95.4 0.028 6.1E-07 58.9 6.3 96 107-211 123-225 (283)
248 PF05368 NmrA: NmrA-like famil 95.3 0.11 2.4E-06 51.0 9.8 69 114-188 1-74 (233)
249 PF02882 THF_DHG_CYH_C: Tetrah 95.3 0.072 1.6E-06 51.5 8.2 75 107-212 33-108 (160)
250 PTZ00187 succinyl-CoA syntheta 95.2 0.097 2.1E-06 55.8 9.6 115 112-243 30-152 (317)
251 PRK14191 bifunctional 5,10-met 95.2 0.046 9.9E-07 57.4 6.8 75 107-212 154-229 (285)
252 TIGR02354 thiF_fam2 thiamine b 95.1 0.088 1.9E-06 52.2 8.1 102 105-214 16-146 (200)
253 PRK00683 murD UDP-N-acetylmura 95.0 0.07 1.5E-06 58.0 8.0 76 111-197 3-78 (418)
254 PRK09496 trkA potassium transp 95.0 0.17 3.8E-06 54.8 11.0 92 112-210 232-329 (453)
255 TIGR01470 cysG_Nterm siroheme 95.0 0.15 3.3E-06 50.7 9.6 77 107-192 6-83 (205)
256 TIGR02356 adenyl_thiF thiazole 95.0 0.14 3E-06 50.7 9.2 88 105-199 16-132 (202)
257 TIGR01546 GAPDH-II_archae glyc 94.9 0.11 2.5E-06 55.6 9.1 77 114-195 1-92 (333)
258 PRK09424 pntA NAD(P) transhydr 94.9 0.084 1.8E-06 59.6 8.5 95 109-211 164-284 (509)
259 PRK14178 bifunctional 5,10-met 94.9 0.07 1.5E-06 55.9 7.3 75 107-212 149-224 (279)
260 PRK03659 glutathione-regulated 94.9 0.12 2.5E-06 59.4 9.7 75 112-193 401-479 (601)
261 PRK12749 quinate/shikimate deh 94.9 0.053 1.2E-06 56.7 6.4 77 108-191 122-209 (288)
262 TIGR01019 sucCoAalpha succinyl 94.8 0.13 2.7E-06 54.1 8.9 115 112-243 7-126 (286)
263 cd05211 NAD_bind_Glu_Leu_Phe_V 94.7 0.089 1.9E-06 53.0 7.1 79 106-191 19-110 (217)
264 PF03435 Saccharop_dh: Sacchar 94.7 0.098 2.1E-06 56.0 7.9 78 114-197 1-86 (386)
265 cd05293 LDH_1 A subgroup of L- 94.6 0.094 2E-06 55.5 7.5 68 112-186 4-79 (312)
266 PTZ00325 malate dehydrogenase; 94.5 0.06 1.3E-06 57.3 5.9 78 105-187 3-85 (321)
267 PRK10669 putative cation:proto 94.5 0.18 3.9E-06 57.0 9.9 73 113-192 419-495 (558)
268 PRK05442 malate dehydrogenase; 94.5 0.32 7E-06 51.9 11.2 68 110-187 3-89 (326)
269 PLN02602 lactate dehydrogenase 94.5 0.25 5.4E-06 53.3 10.3 67 112-186 38-113 (350)
270 cd01338 MDH_choloroplast_like 94.4 0.12 2.7E-06 54.9 7.8 65 112-186 3-86 (322)
271 PRK14176 bifunctional 5,10-met 94.4 0.13 2.9E-06 54.1 7.8 75 107-212 161-236 (287)
272 PF10728 DUF2520: Domain of un 94.3 0.35 7.5E-06 45.3 9.7 86 263-355 4-90 (132)
273 PRK14183 bifunctional 5,10-met 94.3 0.12 2.7E-06 54.2 7.4 74 107-211 154-228 (281)
274 PRK12548 shikimate 5-dehydroge 94.3 0.11 2.4E-06 54.1 7.0 75 108-191 124-212 (289)
275 cd05294 LDH-like_MDH_nadp A la 94.2 0.21 4.6E-06 52.6 9.2 67 112-187 1-81 (309)
276 PRK01710 murD UDP-N-acetylmura 94.2 0.12 2.7E-06 56.8 7.6 76 101-185 5-84 (458)
277 PRK00421 murC UDP-N-acetylmura 94.1 0.14 3E-06 56.4 7.8 71 105-185 2-73 (461)
278 PRK03562 glutathione-regulated 94.1 0.22 4.8E-06 57.4 9.6 76 112-194 401-480 (621)
279 PF01262 AlaDh_PNT_C: Alanine 94.1 0.055 1.2E-06 51.7 4.1 99 106-212 16-139 (168)
280 TIGR01761 thiaz-red thiazoliny 94.1 0.2 4.2E-06 54.0 8.6 86 112-209 4-94 (343)
281 PRK06270 homoserine dehydrogen 94.1 0.19 4.1E-06 53.7 8.4 99 112-210 3-123 (341)
282 PRK14173 bifunctional 5,10-met 94.0 0.15 3.3E-06 53.6 7.4 74 107-211 152-226 (287)
283 PRK14186 bifunctional 5,10-met 94.0 0.15 3.3E-06 53.9 7.4 75 107-212 155-230 (297)
284 cd00300 LDH_like L-lactate deh 93.9 0.2 4.4E-06 52.4 8.2 68 114-187 1-75 (300)
285 TIGR01759 MalateDH-SF1 malate 93.9 0.25 5.4E-06 52.7 8.9 69 112-186 4-87 (323)
286 PF03720 UDPG_MGDP_dh_C: UDP-g 93.8 0.24 5.1E-06 44.1 7.3 84 121-214 17-103 (106)
287 PRK14172 bifunctional 5,10-met 93.8 0.18 3.9E-06 52.9 7.4 74 107-211 155-229 (278)
288 PRK14177 bifunctional 5,10-met 93.8 0.19 4.1E-06 52.9 7.5 74 107-211 156-230 (284)
289 PRK14169 bifunctional 5,10-met 93.7 0.19 4E-06 52.9 7.4 75 107-212 153-228 (282)
290 PRK14170 bifunctional 5,10-met 93.7 0.18 4E-06 53.0 7.4 74 107-211 154-228 (284)
291 PLN02516 methylenetetrahydrofo 93.7 0.18 3.8E-06 53.5 7.2 75 107-212 164-239 (299)
292 cd01076 NAD_bind_1_Glu_DH NAD( 93.7 0.15 3.2E-06 51.7 6.4 32 106-144 27-58 (227)
293 cd01337 MDH_glyoxysomal_mitoch 93.6 0.44 9.6E-06 50.6 10.1 70 112-187 1-77 (310)
294 COG0190 FolD 5,10-methylene-te 93.5 0.2 4.3E-06 52.7 7.1 75 106-211 152-227 (283)
295 PRK00676 hemA glutamyl-tRNA re 93.5 0.2 4.3E-06 53.9 7.3 64 106-186 170-234 (338)
296 PRK12475 thiamine/molybdopteri 93.4 0.4 8.7E-06 51.3 9.5 88 105-199 19-137 (338)
297 PF00899 ThiF: ThiF family; I 93.3 0.23 5E-06 45.5 6.6 31 112-148 3-34 (135)
298 cd01336 MDH_cytoplasmic_cytoso 93.3 0.29 6.2E-06 52.1 8.0 75 112-186 3-86 (325)
299 PRK14180 bifunctional 5,10-met 93.2 0.24 5.2E-06 52.0 7.3 74 107-211 155-229 (282)
300 PRK00141 murD UDP-N-acetylmura 93.2 0.22 4.7E-06 55.3 7.4 75 106-189 11-87 (473)
301 PRK14171 bifunctional 5,10-met 93.2 0.25 5.4E-06 52.1 7.4 74 107-211 156-230 (288)
302 PRK14190 bifunctional 5,10-met 93.2 0.25 5.4E-06 52.0 7.3 75 107-212 155-230 (284)
303 cd05290 LDH_3 A subgroup of L- 93.2 0.19 4.2E-06 53.1 6.5 68 113-187 1-77 (307)
304 PRK14166 bifunctional 5,10-met 93.1 0.26 5.5E-06 51.9 7.3 74 107-211 154-228 (282)
305 COG1063 Tdh Threonine dehydrog 93.0 0.49 1.1E-05 50.5 9.4 91 112-211 170-268 (350)
306 PRK14187 bifunctional 5,10-met 93.0 0.27 5.9E-06 52.0 7.3 74 107-211 157-231 (294)
307 PRK14182 bifunctional 5,10-met 92.8 0.32 6.9E-06 51.2 7.5 74 107-211 154-228 (282)
308 TIGR01758 MDH_euk_cyt malate d 92.8 0.28 6E-06 52.3 7.2 68 113-186 1-83 (324)
309 PLN02616 tetrahydrofolate dehy 92.8 0.26 5.7E-06 53.4 6.9 74 107-211 228-302 (364)
310 PRK14027 quinate/shikimate deh 92.8 0.22 4.7E-06 52.1 6.2 76 108-190 125-206 (283)
311 TIGR01772 MDH_euk_gproteo mala 92.7 0.59 1.3E-05 49.7 9.3 69 113-187 1-76 (312)
312 PRK14106 murD UDP-N-acetylmura 92.7 0.37 7.9E-06 52.5 8.0 71 108-187 3-77 (450)
313 PRK14193 bifunctional 5,10-met 92.6 0.33 7.1E-06 51.1 7.3 74 107-211 155-231 (284)
314 cd01485 E1-1_like Ubiquitin ac 92.6 0.61 1.3E-05 46.1 8.8 36 105-147 14-50 (198)
315 PLN00112 malate dehydrogenase 92.6 1.1 2.4E-05 50.0 11.7 74 112-186 101-184 (444)
316 PLN02897 tetrahydrofolate dehy 92.6 0.3 6.4E-06 52.7 7.0 74 107-211 211-285 (345)
317 cd00704 MDH Malate dehydrogena 92.6 0.34 7.4E-06 51.6 7.5 64 113-186 2-84 (323)
318 PRK01438 murD UDP-N-acetylmura 92.6 0.33 7.1E-06 53.5 7.6 69 108-186 14-86 (480)
319 cd00757 ThiF_MoeB_HesA_family 92.5 0.49 1.1E-05 47.5 8.1 28 105-133 16-43 (228)
320 PRK15076 alpha-galactosidase; 92.5 0.24 5.1E-06 54.8 6.3 75 112-189 2-86 (431)
321 cd08230 glucose_DH Glucose deh 92.4 1.2 2.5E-05 46.9 11.1 93 109-211 172-268 (355)
322 PRK14174 bifunctional 5,10-met 92.4 0.34 7.4E-06 51.2 7.0 79 107-212 156-235 (295)
323 COG1648 CysG Siroheme synthase 92.3 0.79 1.7E-05 46.2 9.3 84 106-198 8-92 (210)
324 cd01492 Aos1_SUMO Ubiquitin ac 92.3 0.67 1.4E-05 45.8 8.6 36 105-147 16-52 (197)
325 PRK06349 homoserine dehydrogen 92.2 0.35 7.5E-06 53.3 7.2 91 112-209 4-101 (426)
326 PRK05690 molybdopterin biosynt 92.2 0.65 1.4E-05 47.4 8.7 28 105-133 27-54 (245)
327 PRK07688 thiamine/molybdopteri 92.2 0.82 1.8E-05 49.0 9.8 88 105-199 19-137 (339)
328 TIGR01745 asd_gamma aspartate- 92.2 0.8 1.7E-05 49.9 9.7 168 112-324 1-178 (366)
329 PF03059 NAS: Nicotianamine sy 92.1 0.83 1.8E-05 47.9 9.5 99 112-215 122-235 (276)
330 PF00185 OTCace: Aspartate/orn 92.1 0.95 2.1E-05 43.3 9.2 69 109-188 1-83 (158)
331 PRK03369 murD UDP-N-acetylmura 92.1 0.45 9.7E-06 53.1 7.9 70 106-185 8-77 (488)
332 COG1064 AdhP Zn-dependent alco 92.0 0.67 1.4E-05 50.0 8.8 92 108-211 165-258 (339)
333 PRK05086 malate dehydrogenase; 92.0 1 2.2E-05 47.7 10.0 72 112-187 1-78 (312)
334 PLN02968 Probable N-acetyl-gam 91.9 0.47 1E-05 51.7 7.7 93 112-214 39-136 (381)
335 cd01483 E1_enzyme_family Super 91.8 1.2 2.6E-05 41.1 9.2 29 113-147 1-30 (143)
336 PRK14185 bifunctional 5,10-met 91.8 0.46 9.9E-06 50.3 7.2 74 107-211 154-232 (293)
337 PRK01390 murD UDP-N-acetylmura 91.8 0.43 9.3E-06 52.4 7.3 65 108-184 7-71 (460)
338 PRK02318 mannitol-1-phosphate 91.8 0.32 7E-06 52.6 6.2 84 112-202 1-104 (381)
339 COG0039 Mdh Malate/lactate deh 91.8 1 2.2E-05 48.1 9.8 71 112-186 1-77 (313)
340 TIGR01851 argC_other N-acetyl- 91.6 0.9 2E-05 48.4 9.2 157 112-321 2-159 (310)
341 PLN00106 malate dehydrogenase 91.6 0.41 8.9E-06 51.1 6.7 70 112-187 19-95 (323)
342 PLN02520 bifunctional 3-dehydr 91.5 0.39 8.5E-06 54.4 6.8 75 108-191 377-452 (529)
343 PF04016 DUF364: Domain of unk 91.5 0.27 5.8E-06 46.7 4.6 91 100-209 2-92 (147)
344 PRK08644 thiamine biosynthesis 91.5 0.87 1.9E-05 45.6 8.5 37 105-148 23-60 (212)
345 TIGR03366 HpnZ_proposed putati 91.4 1.4 2.9E-05 44.9 10.1 88 109-211 120-217 (280)
346 TIGR00978 asd_EA aspartate-sem 91.4 0.65 1.4E-05 49.6 8.0 94 112-214 1-106 (341)
347 COG2910 Putative NADH-flavin r 91.4 0.64 1.4E-05 46.6 7.2 95 112-215 1-107 (211)
348 PLN02353 probable UDP-glucose 91.3 1.1 2.5E-05 50.2 10.1 100 107-214 321-449 (473)
349 PRK14184 bifunctional 5,10-met 91.3 0.51 1.1E-05 49.8 6.9 79 107-212 154-233 (286)
350 PRK05562 precorrin-2 dehydroge 91.3 1.3 2.7E-05 45.2 9.5 98 92-199 8-106 (223)
351 PRK08328 hypothetical protein; 91.2 1.2 2.6E-05 45.1 9.3 28 105-133 22-49 (231)
352 KOG2741 Dimeric dihydrodiol de 91.2 0.68 1.5E-05 49.9 7.8 85 112-200 7-94 (351)
353 PLN02383 aspartate semialdehyd 91.1 0.72 1.6E-05 49.6 7.9 88 112-214 8-102 (344)
354 PRK11863 N-acetyl-gamma-glutam 91.1 1.1 2.4E-05 47.8 9.3 156 112-320 3-159 (313)
355 PRK08762 molybdopterin biosynt 91.0 1.3 2.8E-05 47.9 9.9 88 105-199 130-246 (376)
356 KOG0022 Alcohol dehydrogenase, 90.9 0.4 8.6E-06 51.4 5.6 52 106-164 189-240 (375)
357 PLN03075 nicotianamine synthas 90.8 2.3 4.9E-05 45.2 11.1 100 109-214 123-237 (296)
358 TIGR01202 bchC 2-desacetyl-2-h 90.8 1.2 2.7E-05 46.0 9.2 87 109-211 144-230 (308)
359 TIGR01757 Malate-DH_plant mala 90.7 1.4 3E-05 48.4 9.8 22 112-133 45-67 (387)
360 PRK12550 shikimate 5-dehydroge 90.6 0.65 1.4E-05 48.4 6.9 68 112-191 123-191 (272)
361 PRK02472 murD UDP-N-acetylmura 90.5 0.83 1.8E-05 49.7 7.9 70 108-186 3-76 (447)
362 PRK09880 L-idonate 5-dehydroge 90.4 1.9 4E-05 45.2 10.2 92 109-211 169-265 (343)
363 PRK05671 aspartate-semialdehyd 90.4 0.86 1.9E-05 48.9 7.8 89 112-214 5-99 (336)
364 TIGR00670 asp_carb_tr aspartat 90.4 0.81 1.8E-05 48.4 7.4 70 107-185 147-223 (301)
365 PLN00125 Succinyl-CoA ligase [ 90.4 1.5 3.2E-05 46.6 9.3 116 112-243 13-133 (300)
366 TIGR02355 moeB molybdopterin s 90.3 1.1 2.4E-05 45.8 8.1 28 105-133 19-46 (240)
367 PRK02006 murD UDP-N-acetylmura 90.1 0.81 1.8E-05 51.0 7.6 71 108-188 5-81 (498)
368 PRK14181 bifunctional 5,10-met 90.0 0.91 2E-05 47.9 7.3 79 107-212 150-229 (287)
369 COG0771 MurD UDP-N-acetylmuram 89.9 0.69 1.5E-05 51.6 6.7 70 107-185 4-76 (448)
370 PRK08306 dipicolinate synthase 89.9 1.2 2.5E-05 46.8 8.1 84 112-209 3-98 (296)
371 PRK14874 aspartate-semialdehyd 89.7 1.1 2.5E-05 47.6 8.0 88 112-214 2-96 (334)
372 PRK05597 molybdopterin biosynt 89.6 1.3 2.8E-05 47.8 8.4 88 105-199 23-139 (355)
373 COG0078 ArgF Ornithine carbamo 89.6 1.1 2.4E-05 47.7 7.6 85 108-203 151-248 (310)
374 COG0136 Asd Aspartate-semialde 89.4 5.2 0.00011 43.2 12.5 151 112-296 2-161 (334)
375 TIGR01318 gltD_gamma_fam gluta 89.4 1.5 3.3E-05 48.6 8.9 34 109-149 140-173 (467)
376 PF03447 NAD_binding_3: Homose 89.3 1.6 3.4E-05 38.9 7.4 82 118-209 1-87 (117)
377 cd01487 E1_ThiF_like E1_ThiF_l 89.2 2.4 5.2E-05 41.0 9.2 30 113-148 1-31 (174)
378 TIGR02822 adh_fam_2 zinc-bindi 89.2 2.4 5.2E-05 44.4 9.8 88 109-211 165-253 (329)
379 COG0289 DapB Dihydrodipicolina 89.2 1.9 4.1E-05 45.1 8.8 119 112-243 3-130 (266)
380 PRK08040 putative semialdehyde 89.2 0.75 1.6E-05 49.4 6.1 90 112-214 5-99 (336)
381 CHL00194 ycf39 Ycf39; Provisio 89.1 0.77 1.7E-05 47.6 6.1 69 112-187 1-73 (317)
382 PRK05600 thiamine biosynthesis 89.0 1.6 3.4E-05 47.5 8.6 88 105-199 36-152 (370)
383 PRK12809 putative oxidoreducta 89.0 1.6 3.5E-05 50.4 9.1 34 109-149 309-342 (639)
384 PRK04284 ornithine carbamoyltr 88.9 1.2 2.6E-05 47.8 7.5 70 107-185 152-231 (332)
385 PRK14804 ornithine carbamoyltr 88.9 1.5 3.3E-05 46.6 8.1 69 107-186 150-226 (311)
386 COG2227 UbiG 2-polyprenyl-3-me 88.8 2.2 4.8E-05 44.1 8.9 91 108-211 58-160 (243)
387 PRK12562 ornithine carbamoyltr 88.7 1.4 3.1E-05 47.4 7.8 71 107-186 153-233 (334)
388 PRK14168 bifunctional 5,10-met 88.6 1.2 2.5E-05 47.3 7.0 78 107-211 158-236 (297)
389 PLN02586 probable cinnamyl alc 88.6 2.9 6.3E-05 44.3 10.1 91 109-209 183-275 (360)
390 PRK06598 aspartate-semialdehyd 88.5 6 0.00013 43.3 12.5 167 112-323 2-178 (369)
391 TIGR03026 NDP-sugDHase nucleot 88.4 2.4 5.2E-05 46.2 9.5 88 108-211 311-409 (411)
392 PRK08664 aspartate-semialdehyd 88.3 1.7 3.7E-05 46.5 8.2 94 112-214 4-109 (349)
393 TIGR01771 L-LDH-NAD L-lactate 88.3 1.8 3.9E-05 45.6 8.2 66 116-187 1-73 (299)
394 PRK00779 ornithine carbamoyltr 88.2 3.2 7E-05 43.9 10.1 70 107-185 149-224 (304)
395 PRK00517 prmA ribosomal protei 88.2 2 4.4E-05 43.6 8.2 90 109-211 119-212 (250)
396 PRK06728 aspartate-semialdehyd 88.1 1.3 2.9E-05 47.8 7.2 89 112-214 6-101 (347)
397 PRK12771 putative glutamate sy 88.0 1.2 2.6E-05 50.4 7.1 75 107-188 134-232 (564)
398 PRK01713 ornithine carbamoyltr 88.0 1.6 3.5E-05 46.8 7.7 70 107-185 153-232 (334)
399 PRK04690 murD UDP-N-acetylmura 87.9 1.5 3.3E-05 48.7 7.7 68 108-185 6-76 (468)
400 PRK07878 molybdopterin biosynt 87.8 2.2 4.7E-05 46.6 8.7 28 105-133 37-64 (392)
401 PRK08223 hypothetical protein; 87.4 3.1 6.7E-05 44.0 9.2 28 105-133 22-49 (287)
402 cd08237 ribitol-5-phosphate_DH 87.4 3.6 7.7E-05 43.2 9.8 90 109-210 163-254 (341)
403 PRK04308 murD UDP-N-acetylmura 87.3 1.9 4.2E-05 47.1 8.0 71 108-188 3-79 (445)
404 PRK10537 voltage-gated potassi 87.1 3.2 6.9E-05 45.6 9.5 89 112-211 241-336 (393)
405 PRK12769 putative oxidoreducta 87.0 2.1 4.5E-05 49.5 8.5 34 109-149 326-359 (654)
406 TIGR03693 ocin_ThiF_like putat 86.9 2.5 5.5E-05 48.9 8.8 99 109-214 128-242 (637)
407 PRK07411 hypothetical protein; 86.8 2.1 4.5E-05 46.8 7.8 88 105-199 33-149 (390)
408 PRK06392 homoserine dehydrogen 86.6 2 4.4E-05 45.9 7.5 22 112-133 1-22 (326)
409 PRK02255 putrescine carbamoylt 86.5 3.7 8E-05 44.3 9.4 71 107-186 151-230 (338)
410 PRK02102 ornithine carbamoyltr 86.5 2.1 4.5E-05 46.0 7.5 70 107-185 152-231 (331)
411 TIGR01532 E4PD_g-proteo D-eryt 86.3 2.3 5E-05 45.6 7.7 95 113-212 1-120 (325)
412 PRK14573 bifunctional D-alanyl 86.3 1.9 4.1E-05 51.2 7.7 65 112-185 5-70 (809)
413 TIGR01087 murD UDP-N-acetylmur 86.1 1.7 3.6E-05 47.3 6.7 64 113-185 1-69 (433)
414 cd01486 Apg7 Apg7 is an E1-lik 86.0 1.7 3.6E-05 46.4 6.4 21 113-133 1-21 (307)
415 PRK03515 ornithine carbamoyltr 85.9 2.6 5.6E-05 45.4 7.9 70 107-185 153-232 (336)
416 PLN00141 Tic62-NAD(P)-related 85.7 2.6 5.6E-05 42.1 7.3 39 106-151 13-52 (251)
417 TIGR01296 asd_B aspartate-semi 85.7 1.7 3.7E-05 46.5 6.4 87 113-214 1-94 (339)
418 PRK14167 bifunctional 5,10-met 85.5 2.2 4.9E-05 45.3 7.0 78 107-211 154-232 (297)
419 PLN02342 ornithine carbamoyltr 85.5 2.8 6E-05 45.5 7.9 69 107-186 191-267 (348)
420 PRK10637 cysG siroheme synthas 85.5 4.3 9.3E-05 45.2 9.6 84 106-198 8-92 (457)
421 PRK03803 murD UDP-N-acetylmura 85.1 2.3 5.1E-05 46.5 7.3 66 112-185 7-75 (448)
422 cd01491 Ube1_repeat1 Ubiquitin 84.9 3.8 8.2E-05 43.2 8.4 36 105-147 14-50 (286)
423 TIGR02469 CbiT precorrin-6Y C5 84.8 9.8 0.00021 32.9 9.7 94 109-210 19-120 (124)
424 TIGR03570 NeuD_NnaD sugar O-ac 84.6 3.3 7.2E-05 39.2 7.2 76 113-199 1-80 (201)
425 COG0026 PurK Phosphoribosylami 84.6 1.5 3.2E-05 47.9 5.2 66 112-184 2-68 (375)
426 TIGR02819 fdhA_non_GSH formald 84.5 7.4 0.00016 42.2 10.7 96 109-211 185-298 (393)
427 PRK07200 aspartate/ornithine c 84.4 3.3 7.2E-05 45.6 8.0 71 107-186 184-270 (395)
428 KOG1495 Lactate dehydrogenase 84.2 9.4 0.0002 40.5 10.6 99 106-211 16-136 (332)
429 PLN02178 cinnamyl-alcohol dehy 84.2 6.9 0.00015 42.0 10.2 89 109-209 178-270 (375)
430 PRK00856 pyrB aspartate carbam 84.0 4.5 9.7E-05 43.0 8.5 65 107-185 153-220 (305)
431 TIGR01082 murC UDP-N-acetylmur 84.0 2.6 5.7E-05 46.2 7.1 64 113-185 1-65 (448)
432 PRK01581 speE spermidine synth 83.7 6.5 0.00014 43.1 9.7 93 112-213 152-269 (374)
433 cd08239 THR_DH_like L-threonin 83.6 6.3 0.00014 40.7 9.4 90 109-209 163-259 (339)
434 cd05188 MDR Medium chain reduc 83.6 13 0.00028 36.1 11.1 93 108-211 133-231 (271)
435 PRK06019 phosphoribosylaminoim 83.6 2 4.4E-05 46.1 5.9 64 112-184 3-69 (372)
436 PRK03806 murD UDP-N-acetylmura 83.5 3.4 7.3E-05 45.1 7.6 69 108-185 4-72 (438)
437 PRK07806 short chain dehydroge 83.5 8.5 0.00019 37.7 9.8 36 108-150 4-40 (248)
438 TIGR03649 ergot_EASG ergot alk 83.5 1.5 3.2E-05 44.4 4.6 66 113-188 1-77 (285)
439 PLN02527 aspartate carbamoyltr 83.4 3.5 7.5E-05 43.8 7.4 71 107-185 148-225 (306)
440 COG1062 AdhC Zn-dependent alco 83.4 7.8 0.00017 42.2 9.9 69 112-190 187-266 (366)
441 PRK12814 putative NADPH-depend 83.1 4.5 9.7E-05 47.0 8.8 36 107-149 190-225 (652)
442 cd08255 2-desacetyl-2-hydroxye 83.1 8.7 0.00019 38.3 9.8 91 108-211 96-189 (277)
443 PRK00994 F420-dependent methyl 83.1 39 0.00084 35.3 14.3 20 112-131 3-22 (277)
444 PRK06463 fabG 3-ketoacyl-(acyl 82.9 10 0.00022 37.6 10.1 83 108-214 5-89 (255)
445 PLN02477 glutamate dehydrogena 82.8 2.3 5E-05 47.0 6.0 32 106-144 202-233 (410)
446 PRK12810 gltD glutamate syntha 82.8 4.2 9.2E-05 45.1 8.1 36 107-149 140-175 (471)
447 COG1004 Ugd Predicted UDP-gluc 82.7 3.5 7.6E-05 45.5 7.2 74 108-195 308-393 (414)
448 PRK09414 glutamate dehydrogena 82.6 3.9 8.5E-05 45.7 7.7 36 106-148 228-263 (445)
449 PLN02662 cinnamyl-alcohol dehy 82.4 4.6 9.9E-05 41.3 7.7 72 109-187 3-85 (322)
450 KOG3007 Mu-crystallin [Amino a 82.4 2.3 5E-05 44.8 5.4 97 113-217 140-242 (333)
451 PF10100 DUF2338: Uncharacteri 82.3 20 0.00043 39.9 12.7 172 112-299 2-208 (429)
452 PRK08192 aspartate carbamoyltr 82.3 4.5 9.8E-05 43.6 7.8 71 107-185 156-233 (338)
453 PRK05717 oxidoreductase; Valid 82.2 7.1 0.00015 38.6 8.7 36 107-149 7-43 (255)
454 PRK09242 tropinone reductase; 82.1 5.4 0.00012 39.5 7.8 88 108-214 7-98 (257)
455 PRK15182 Vi polysaccharide bio 82.0 3.4 7.3E-05 45.7 6.9 95 106-214 310-415 (425)
456 PRK10309 galactitol-1-phosphat 82.0 8.4 0.00018 40.1 9.5 47 109-162 160-206 (347)
457 PLN02514 cinnamyl-alcohol dehy 81.7 10 0.00022 40.2 10.1 93 109-211 180-274 (357)
458 TIGR03451 mycoS_dep_FDH mycoth 81.6 12 0.00026 39.4 10.7 93 109-211 176-275 (358)
459 PRK11891 aspartate carbamoyltr 81.6 4.9 0.00011 44.8 8.0 72 107-186 238-316 (429)
460 TIGR03316 ygeW probable carbam 81.6 4.9 0.00011 43.7 7.8 70 108-186 168-253 (357)
461 cd08281 liver_ADH_like1 Zinc-d 81.5 11 0.00024 40.0 10.3 90 109-209 191-287 (371)
462 PRK07825 short chain dehydroge 81.5 7.7 0.00017 38.8 8.8 86 108-215 3-89 (273)
463 PRK06057 short chain dehydroge 81.5 12 0.00025 37.1 10.0 36 107-149 4-40 (255)
464 PRK13984 putative oxidoreducta 81.4 5.2 0.00011 45.7 8.4 35 108-149 281-315 (604)
465 TIGR00658 orni_carb_tr ornithi 81.3 4.6 0.0001 42.8 7.4 69 108-185 146-223 (304)
466 TIGR01317 GOGAT_sm_gam glutama 81.0 6.1 0.00013 44.2 8.6 36 107-149 140-175 (485)
467 PRK12409 D-amino acid dehydrog 80.9 2.2 4.9E-05 45.6 5.0 33 112-150 2-34 (410)
468 PLN02214 cinnamoyl-CoA reducta 80.9 5.7 0.00012 41.8 7.9 76 106-188 6-91 (342)
469 COG0074 SucD Succinyl-CoA synt 80.8 3.1 6.8E-05 43.9 5.8 172 112-300 9-194 (293)
470 PRK08374 homoserine dehydrogen 80.7 8.7 0.00019 41.2 9.3 95 112-209 3-119 (336)
471 PRK08265 short chain dehydroge 80.5 9.2 0.0002 38.2 8.9 86 108-214 4-90 (261)
472 TIGR03201 dearomat_had 6-hydro 80.5 8.7 0.00019 40.3 9.1 46 109-162 166-211 (349)
473 COG4569 MhpF Acetaldehyde dehy 80.4 3.5 7.7E-05 42.0 5.7 78 112-199 5-92 (310)
474 cd08298 CAD2 Cinnamyl alcohol 80.3 9.7 0.00021 39.0 9.2 88 108-210 166-254 (329)
475 PF01494 FAD_binding_3: FAD bi 80.2 2.7 5.9E-05 42.7 5.1 32 113-150 3-34 (356)
476 PLN03209 translocon at the inn 80.2 3.1 6.7E-05 48.0 6.0 40 106-152 76-116 (576)
477 TIGR00406 prmA ribosomal prote 80.1 9.9 0.00021 39.6 9.2 95 108-211 158-258 (288)
478 PRK02705 murD UDP-N-acetylmura 79.9 4.8 0.0001 44.0 7.2 66 113-184 2-74 (459)
479 cd08285 NADP_ADH NADP(H)-depen 79.7 10 0.00022 39.5 9.3 91 109-209 166-263 (351)
480 cd05197 GH4_glycoside_hydrolas 79.7 4.4 9.6E-05 44.9 6.9 77 112-192 1-88 (425)
481 cd05283 CAD1 Cinnamyl alcohol 79.7 9.7 0.00021 39.5 9.0 91 109-210 169-261 (337)
482 COG0002 ArgC Acetylglutamate s 79.7 6.4 0.00014 42.8 7.8 94 112-213 3-102 (349)
483 PRK13394 3-hydroxybutyrate deh 79.5 7.6 0.00016 38.2 7.9 86 108-214 5-94 (262)
484 cd05298 GH4_GlvA_pagL_like Gly 79.5 4.5 9.8E-05 45.1 6.8 77 112-192 1-88 (437)
485 PLN02740 Alcohol dehydrogenase 79.4 11 0.00024 40.2 9.6 48 108-163 197-245 (381)
486 PRK05786 fabG 3-ketoacyl-(acyl 79.2 20 0.00043 34.8 10.6 37 108-151 3-40 (238)
487 cd08234 threonine_DH_like L-th 78.8 11 0.00024 38.5 9.1 90 109-209 159-254 (334)
488 PRK09186 flagellin modificatio 78.8 8.7 0.00019 37.7 8.0 35 108-149 2-37 (256)
489 cd08277 liver_alcohol_DH_like 78.8 11 0.00024 39.8 9.3 86 108-204 183-277 (365)
490 PRK07231 fabG 3-ketoacyl-(acyl 78.8 7.9 0.00017 37.7 7.6 36 108-150 3-39 (251)
491 PRK10083 putative oxidoreducta 78.6 19 0.00042 37.0 10.8 92 108-209 159-256 (339)
492 PF02056 Glyco_hydro_4: Family 78.4 8.7 0.00019 38.1 7.8 78 113-193 1-88 (183)
493 PRK07060 short chain dehydroge 78.3 8.5 0.00019 37.4 7.7 36 108-150 7-43 (245)
494 PRK04523 N-acetylornithine car 78.3 7.7 0.00017 41.8 7.9 70 108-186 166-252 (335)
495 PF12847 Methyltransf_18: Meth 78.2 9.2 0.0002 32.8 7.1 94 109-210 1-109 (112)
496 TIGR03325 BphB_TodD cis-2,3-di 78.1 11 0.00024 37.5 8.6 36 108-150 3-39 (262)
497 COG0334 GdhA Glutamate dehydro 78.1 5.8 0.00012 44.0 7.0 38 107-151 204-241 (411)
498 PRK07877 hypothetical protein; 78.0 4.2 9.1E-05 48.1 6.3 113 78-198 71-216 (722)
499 PRK06138 short chain dehydroge 78.0 12 0.00026 36.5 8.7 36 108-150 3-39 (252)
500 PRK14031 glutamate dehydrogena 78.0 6.5 0.00014 44.0 7.5 36 106-148 224-259 (444)
No 1
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=100.00 E-value=4.7e-90 Score=735.71 Aligned_cols=437 Identities=24% Similarity=0.318 Sum_probs=396.7
Q ss_pred ccccccchhhhhhhh-----cccccceeeeccccccccchhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEE
Q 007951 71 LLDFETSVFKKDMIS-----LADRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKV 145 (583)
Q Consensus 71 ~~~~~~~~~~~~~~~-----~~~~~e~v~~~~r~~f~~~~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViV 145 (583)
.|||||++|++|+++ |++++| |++..+.|+| |+|+|||||+||+++|+|||++ |++|+|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~r~~~r~e---------f~~~~~~Lkg-KtIaIIGyGSqG~AqAlNLrdS------GvnVvv 64 (487)
T PRK05225 1 ANYFNTLNLRQQLAQLGKCRFMDRDE---------FADGASYLKG-KKIVIVGCGAQGLNQGLNMRDS------GLDISY 64 (487)
T ss_pred CCccccccHHHHHHHhccceecchhh---------ccchhHHhCC-CEEEEEccCHHHHHHhCCCccc------cceeEE
Confidence 499999999999998 778777 9989999999 9999999999999999999999 999999
Q ss_pred EecCC-----cccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccchHHHHHHHHHHhcCCCCcEEEEecCchhhhhh
Q 007951 146 GLRKG-----SRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQ 220 (583)
Q Consensus 146 g~r~~-----s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~~i~~ie 220 (583)
|+|.+ ++++++|.+.||. +.+..|++++||+|++++||..+..++++|.|+||+|++|.++|||+|++.
T Consensus 65 glr~~~id~~~~s~~kA~~dGF~-----v~~~~Ea~~~ADvVviLlPDt~q~~v~~~i~p~LK~Ga~L~fsHGFni~~~- 138 (487)
T PRK05225 65 ALRKEAIAEKRASWRKATENGFK-----VGTYEELIPQADLVINLTPDKQHSDVVRAVQPLMKQGAALGYSHGFNIVEV- 138 (487)
T ss_pred eccccccccccchHHHHHhcCCc-----cCCHHHHHHhCCEEEEcCChHHHHHHHHHHHhhCCCCCEEEecCCceeeeC-
Confidence 99986 6799999999997 568999999999999999999999999999999999999999999999874
Q ss_pred cccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEeec--CCCCHHHHHHHHHHHHHhCCCc--ccccchhh
Q 007951 221 SMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH--QDVDGRATNVALGWSVALGSPF--TFATTLEQ 296 (583)
Q Consensus 221 ~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv~--qd~sgeale~a~ala~aIG~~~--vieTtf~e 296 (583)
++.||+|++||+|+||+||+.||++|.+| +|+|++|+|+ ||++++++++|++|+.++|+++ +++|||++
T Consensus 139 --~i~~~~dvdVimvAPKgpG~~vR~~y~~G-----~Gvp~l~AV~~~qD~~g~a~~~ala~a~~iG~~ragv~~ttf~~ 211 (487)
T PRK05225 139 --GEQIRKDITVVMVAPKCPGTEVREEYKRG-----FGVPTLIAVHPENDPKGEGMAIAKAWAAATGGHRAGVLESSFVA 211 (487)
T ss_pred --ceeCCCCCcEEEECCCCCCchHHHHHhcC-----CCceEEEEEeecCCCCchHHHHHHHHHHHhCCCccceeecchHH
Confidence 56999999999999999999999999996 8999999999 8999999999999999999996 89999999
Q ss_pred hhhhhhhhhhhhHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhcCcchhhhhhhhhcc
Q 007951 297 EYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSA 376 (583)
Q Consensus 297 E~~sDlfgeqtvLsG~~pAlieAl~d~~Ve~Gl~~e~A~~~~~q~l~Glia~li~e~G~~~m~d~vS~~~~aeyg~~~~~ 376 (583)
|+++||||||++|||+++++++++||.+|+.|++|++||+++.+++. +|+++|+++||..|++++|+ +++||.|..
T Consensus 212 E~~sDL~GEq~vLcG~~~~~~~~~Fe~lve~G~~pe~A~k~~~~~~E-~I~e~i~e~GI~~m~d~~S~--tak~ga~~~- 287 (487)
T PRK05225 212 EVKSDLMGEQTILCGMLQAGSLLCFDKLVAEGTDPAYAEKLIQFGWE-TITEALKQGGITLMMDRLSN--PAKIRAFEL- 287 (487)
T ss_pred HHhhcchhhHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhHH-HHHHHHHhccHHHHHHhccc--hhhcccccc-
Confidence 99999999999999999999999999999999999999999999985 69999999999999999998 456988743
Q ss_pred cchhHHHHH----HHHHHhccCChhhhHHHHhcccccccCCCCCCc-ch-hhhcChHHHHHHHHHccCCCCCCCCCCcch
Q 007951 377 SYYPCMEIL----YECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFP-MG-KIDQTRMWKVGERVRSTRPAGDLGPLHPFT 450 (583)
Q Consensus 377 ~~~p~~~~m----~e~~~~I~sG~far~~~~e~~~~~~~~g~~~~~-~~-~i~~~~ie~vG~~lR~~~~~gei~~~~~~~ 450 (583)
.+.+|++| +++|++|+||+|+|+|+.+|.. |.+.+. |+ ++.+|++|++-. .+.+|-+++||.
T Consensus 288 -~~~~k~~m~p~f~~~~~~I~sG~fak~~m~d~~~-----~~~~l~~~r~~~~~~~~E~~~~------~~~~~~~~~~~e 355 (487)
T PRK05225 288 -SEQLKEIMAPLFQKHMDDIISGEFSSTMMADWAN-----DDKKLLTWREETGKTAFENAPQ------YEGKISEQEYFD 355 (487)
T ss_pred -cHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhc-----CChHHHHHHHHhhcCchhhccc------ccccchhHHHHh
Confidence 24445555 9999999999999999999763 446555 55 668999999753 566888999999
Q ss_pred hHHHHHHHH-H----HHHHHHHhCCChhhhhhhhHHHHhhhcchhhhhccchhhhhhcchhhhccccccccchhHHHHHH
Q 007951 451 AGVYAALMM-A----QIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQ 525 (583)
Q Consensus 451 ~g~~~~~~~-a----~~~~l~~~gh~~se~~ne~~~e~~~sl~p~~~~~g~~~m~~~cs~ta~~g~~~w~~~f~~~~~~~ 525 (583)
.||||+.|+ | |+|+|++.||+|++||+||+.|+ +++.|||.++||+||+.+||+||+||++...||--+.+ ++
T Consensus 356 rG~Lm~a~~~~g~e~~FEtLveaGy~PE~AYfE~lhEl-kLIvdLi~e~Gl~~M~~~iSdTAeyG~y~~g~~vi~~m-k~ 433 (487)
T PRK05225 356 KGVLMVAMVKAGVELAFETMVDSGIIEESAYYESLHEL-PLIANTIARKRLYEMNVVISDTAEYGNYLFSHAAVPLL-KD 433 (487)
T ss_pred hhhHHHHHHHhhhHHHHHHHHHcCCCHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHhhhHhhcCCcccChHHHHHH-HH
Confidence 999999988 4 59999999999999999999999 99999999999999999999999999999999887555 67
Q ss_pred HHhhhccCCc------------cchhhHHhhhcChHHHHHH
Q 007951 526 ALVAVDNDAP------------INGDLISNFLSDPVHGAIE 554 (583)
Q Consensus 526 ~~~~~~~g~~------------~~~~~~~~~~~~~~~~~~~ 554 (583)
+|..|++|+. ....+.+..++||+++.=+
T Consensus 434 ~l~~Iq~G~fak~~~e~~~g~~~l~~~~~~~~~h~iE~vG~ 474 (487)
T PRK05225 434 FMATLQPGDLGKGLPSNAVDNAQLRDVNEAIRNHPIEQVGK 474 (487)
T ss_pred HHHHcCCCHHHhhHHhccCCcHHHHHHHHHHhcCcHHHHHH
Confidence 8888888843 4556778889999987543
No 2
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=1.7e-79 Score=623.57 Aligned_cols=315 Identities=32% Similarity=0.541 Sum_probs=296.2
Q ss_pred cccccchhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhcc
Q 007951 99 DLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG 178 (583)
Q Consensus 99 ~~f~~~~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ 178 (583)
+.+..+ +.|+| |||+|||||+||+++|+||||| |++|+||+|.++.||++|.++||. +.+++|++++
T Consensus 8 d~da~l-~~Lkg-K~iaIIGYGsQG~ahalNLRDS------GlnViiGlr~g~~s~~kA~~dGf~-----V~~v~ea~k~ 74 (338)
T COG0059 8 DEDADL-DLLKG-KKVAIIGYGSQGHAQALNLRDS------GLNVIIGLRKGSSSWKKAKEDGFK-----VYTVEEAAKR 74 (338)
T ss_pred cccCCh-hHhcC-CeEEEEecChHHHHHHhhhhhc------CCcEEEEecCCchhHHHHHhcCCE-----eecHHHHhhc
Confidence 445556 59999 9999999999999999999999 999999999999999999999999 6899999999
Q ss_pred CCeEEEeccchHHHHHHH-HHHhcCCCCcEEEEecCchhhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCC
Q 007951 179 SDLVLLLISDAAQADNYE-KIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGA 257 (583)
Q Consensus 179 ADIVILavpd~a~~~Vl~-eI~~~Lk~GaiL~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~ 257 (583)
||+|++++||..|.+||+ +|.|+|++|++|.|+||||++|. ++.||+|++||||+||+||+.||++|++| +
T Consensus 75 ADvim~L~PDe~q~~vy~~~I~p~Lk~G~aL~FaHGfNihf~---~i~ppkdvdV~MVAPKgPG~~VR~~y~~G-----~ 146 (338)
T COG0059 75 ADVVMILLPDEQQKEVYEKEIAPNLKEGAALGFAHGFNIHFG---LIVPPKDVDVIMVAPKGPGHLVRREYKEG-----F 146 (338)
T ss_pred CCEEEEeCchhhHHHHHHHHhhhhhcCCceEEeccccceecc---eecCCccCcEEEEcCCCCcHHHHHHHHcc-----C
Confidence 999999999999999999 79999999999999999999984 67999999999999999999999999995 8
Q ss_pred CceEEEeecCCCCHHHHHHHHHHHHHhCCCc--ccccchhhhhhhhhhhhhhhHhhHHHHHHHHHHHHHHHcCCCHHHHH
Q 007951 258 GINSSFAVHQDVDGRATNVALGWSVALGSPF--TFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAY 335 (583)
Q Consensus 258 Gv~aliAv~qd~sgeale~a~ala~aIG~~~--vieTtf~eE~~sDlfgeqtvLsG~~pAlieAl~d~~Ve~Gl~~e~A~ 335 (583)
|+|++|+++||+|++++++|++|++++|++| +++|||++|+++||||||++|||++.++|+++||++|++||+||.||
T Consensus 147 GvP~LiAV~qD~sG~a~~~Ala~AkgiGg~RaGvieTTFkeEtetDLfGEQ~vLcGgl~~li~agfetLvEaGy~PE~Ay 226 (338)
T COG0059 147 GVPALIAVHQDASGKALDIALAYAKGIGGTRAGVIETTFKEETETDLFGEQAVLCGGLQALIKAGFETLVEAGYQPELAY 226 (338)
T ss_pred CceeEEEEEeCCCchHHHHHHHHHHhcCCCccceEeeeeHHhhhcccccchhhhhhHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 9999999999999999999999999999986 89999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcHHHHHHhcCcchhhhhhhhhcccc---hhHHHHHHHHHHhccCChhhhHHHHhcccccccC
Q 007951 336 KNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASY---YPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKE 412 (583)
Q Consensus 336 ~~~~q~l~Glia~li~e~G~~~m~d~vS~~~~aeyg~~~~~~~---~p~~~~m~e~~~~I~sG~far~~~~e~~~~~~~~ 412 (583)
++|+|+++ +|++||+|+||..|+++||| |++||.|..+.. ..+|+.|++++++||||+|+++|+++++ .
T Consensus 227 fE~lhE~k-lIvdLiyegGi~~M~~siSn--TAeyG~~~~gprii~~~~k~~mk~~l~dIq~G~Fak~~~~e~~-----~ 298 (338)
T COG0059 227 FECLHELK-LIVDLIYEGGITNMRYSISN--TAEYGDYTRGPRIIDAETKEEMKKVLKDIQSGEFAKEWILENQ-----A 298 (338)
T ss_pred HHHHHHHH-HHHHHHHHhhHHHHHHhcCC--HHHhcccccCceeecHHhHHHHHHHHHHHhcChhHHHHHHhhh-----c
Confidence 99999985 89999999999999999998 778999976642 3468999999999999999999999986 5
Q ss_pred CCCCCc-ch-hhhcChHHHHHHHHHccCCCCC
Q 007951 413 GLPAFP-MG-KIDQTRMWKVGERVRSTRPAGD 442 (583)
Q Consensus 413 g~~~~~-~~-~i~~~~ie~vG~~lR~~~~~ge 442 (583)
|+|.|. ++ ..++|+||+||++||++|||.+
T Consensus 299 g~p~l~~~r~~~~~~~iEkvg~~lrk~m~~~~ 330 (338)
T COG0059 299 GRPKLEALREETAEHEIEKVGKELRKMMPWEK 330 (338)
T ss_pred CCHHHHHHHHHhhcChHHHHHHHHHHhcchhc
Confidence 889887 44 5589999999999999999975
No 3
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=100.00 E-value=3e-73 Score=588.41 Aligned_cols=309 Identities=31% Similarity=0.508 Sum_probs=287.9
Q ss_pred chhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEE
Q 007951 104 LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (583)
Q Consensus 104 ~~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVI 183 (583)
..+.|+| ++|||||+|+||.++|++|+++ |++|+++++. +++++.+.+.|+. +.+++|++++||+|+
T Consensus 10 ~~~~Lkg-KtVGIIG~GsIG~amA~nL~d~------G~~ViV~~r~-~~s~~~A~~~G~~-----v~sl~Eaak~ADVV~ 76 (335)
T PRK13403 10 NVELLQG-KTVAVIGYGSQGHAQAQNLRDS------GVEVVVGVRP-GKSFEVAKADGFE-----VMSVSEAVRTAQVVQ 76 (335)
T ss_pred ChhhhCc-CEEEEEeEcHHHHHHHHHHHHC------cCEEEEEECc-chhhHHHHHcCCE-----ECCHHHHHhcCCEEE
Confidence 3588999 9999999999999999999999 9999988876 5678888888987 458999999999999
Q ss_pred EeccchHHHHHHH-HHHhcCCCCcEEEEecCchhhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEE
Q 007951 184 LLISDAAQADNYE-KIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSS 262 (583)
Q Consensus 184 Lavpd~a~~~Vl~-eI~~~Lk~GaiL~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~al 262 (583)
+++|+..+..++. ++.++|++|++|+++|||+++|- +|.||+|++||||+||+||+.||++|.+| +|+|++
T Consensus 77 llLPd~~t~~V~~~eil~~MK~GaiL~f~hgfni~~~---~i~pp~~vdv~mvaPKgpG~~vR~~y~~G-----~Gvp~l 148 (335)
T PRK13403 77 MLLPDEQQAHVYKAEVEENLREGQMLLFSHGFNIHFG---QINPPSYVDVAMVAPKSPGHLVRRVFQEG-----NGVPAL 148 (335)
T ss_pred EeCCChHHHHHHHHHHHhcCCCCCEEEECCCcceecC---ceeCCCCCeEEEECCCCCChHHHHHHHcC-----CCceeE
Confidence 9999998889986 69999999999999999999884 57999999999999999999999999996 799999
Q ss_pred EeecCCCCHHHHHHHHHHHHHhCCCc--ccccchhhhhhhhhhhhhhhHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 007951 263 FAVHQDVDGRATNVALGWSVALGSPF--TFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVE 340 (583)
Q Consensus 263 iAv~qd~sgeale~a~ala~aIG~~~--vieTtf~eE~~sDlfgeqtvLsG~~pAlieAl~d~~Ve~Gl~~e~A~~~~~q 340 (583)
|+++||+|+++++++++|+++||++| +++|||++|+++||||||++|||++.+||+++||++|++||+||.||++|+|
T Consensus 149 ~av~qd~sg~a~~~ala~a~~iG~~ragv~~ttf~~EtetDlfgEq~vL~Gg~~~li~~gfe~lveaGy~pe~Ayfe~~h 228 (335)
T PRK13403 149 VAVHQDATGTALHVALAYAKGVGCTRAGVIETTFQEETETDLFGEQAVLCGGVTALVKAGFETLTEGGYRPEIAYFECLH 228 (335)
T ss_pred EEEEECCCCcHHHHHHHHHHHcCCCceeEEecchHHHHhhhhcccchhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 99999999999999999999999996 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcHHHHHHhcCcchhhhhhhhhcccc---hhHHHHHHHHHHhccCChhhhHHHHhcccccccCCCCCC
Q 007951 341 CITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASY---YPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAF 417 (583)
Q Consensus 341 ~l~Glia~li~e~G~~~m~d~vS~~~~aeyg~~~~~~~---~p~~~~m~e~~~~I~sG~far~~~~e~~~~~~~~g~~~~ 417 (583)
++ +||+|||+|+|+.+|+++||| |++||+|.+++. ..+|+.|+++|++||+|+|||+|+.+|+ .|.|.|
T Consensus 229 e~-kli~dli~e~G~~~m~~~~S~--taeyG~~~~g~~ii~~~~k~~m~~~l~~iq~g~fa~~~~~e~~-----~g~~~~ 300 (335)
T PRK13403 229 EL-KLIVDLMYEGGLTNMRHSISD--TAEFGDYVTGSRIVTDETKKEMKRVLTEIQQGEFAKKWILENQ-----AGRPTY 300 (335)
T ss_pred HH-HHHHHHHHHccHHHHHHhhCc--HHhcCCccCCCcccCHHHHHHHHHHHHHhcCCHHHHHHHHHhh-----CCCHHH
Confidence 99 589999999999999999998 778999977753 4589999999999999999999999976 588887
Q ss_pred c-c-hhhhcChHHHHHHHHHccCCCC
Q 007951 418 P-M-GKIDQTRMWKVGERVRSTRPAG 441 (583)
Q Consensus 418 ~-~-~~i~~~~ie~vG~~lR~~~~~g 441 (583)
+ + +++++|+||+||++||++|+|-
T Consensus 301 ~~~~~~~~~h~ie~vg~~lR~~~~~~ 326 (335)
T PRK13403 301 NAMKKAEQNHQLEKVGEELREMMSWI 326 (335)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhCCcc
Confidence 7 3 4669999999999999999994
No 4
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=100.00 E-value=4.4e-68 Score=553.70 Aligned_cols=310 Identities=32% Similarity=0.527 Sum_probs=289.0
Q ss_pred hhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 007951 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (583)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVIL 184 (583)
...++| ++|||||+|+||.++|++|+++ |++|+++++.++++++.+.+.|+.. .+..|++++||+|++
T Consensus 12 ~~~L~g-ktIgIIG~GsmG~AlA~~L~~s------G~~Vvv~~r~~~~s~~~A~~~G~~~-----~s~~eaa~~ADVVvL 79 (330)
T PRK05479 12 LSLIKG-KKVAIIGYGSQGHAHALNLRDS------GVDVVVGLREGSKSWKKAEADGFEV-----LTVAEAAKWADVIMI 79 (330)
T ss_pred hhhhCC-CEEEEEeeHHHHHHHHHHHHHC------CCEEEEEECCchhhHHHHHHCCCee-----CCHHHHHhcCCEEEE
Confidence 477899 9999999999999999999999 9999999888888899999999873 588999999999999
Q ss_pred eccchHHHHHH-HHHHhcCCCCcEEEEecCchhhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEE
Q 007951 185 LISDAAQADNY-EKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (583)
Q Consensus 185 avpd~a~~~Vl-~eI~~~Lk~GaiL~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~ali 263 (583)
++||..+.+++ ++|.+++++|++|+++|||++++.+. .||++++|||+|||+|++.+|+.|+.| +|+|+++
T Consensus 80 aVPd~~~~~V~~~~I~~~Lk~g~iL~~a~G~~i~~~~~---~p~~~~~Vi~vaPn~Pg~~vr~~~~~G-----~Gv~~l~ 151 (330)
T PRK05479 80 LLPDEVQAEVYEEEIEPNLKEGAALAFAHGFNIHFGQI---VPPADVDVIMVAPKGPGHLVRREYEEG-----GGVPCLI 151 (330)
T ss_pred cCCHHHHHHHHHHHHHhcCCCCCEEEECCCCChhhcee---ccCCCCcEEEeCCCCCchhhhhhhhcC-----CCceEEE
Confidence 99999999999 67999999999999999999998754 889999999999999999999999995 8999999
Q ss_pred eecCCCCHHHHHHHHHHHHHhCCCc--ccccchhhhhhhhhhhhhhhHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 007951 264 AVHQDVDGRATNVALGWSVALGSPF--TFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVEC 341 (583)
Q Consensus 264 Av~qd~sgeale~a~ala~aIG~~~--vieTtf~eE~~sDlfgeqtvLsG~~pAlieAl~d~~Ve~Gl~~e~A~~~~~q~ 341 (583)
++++|+++++++++++|++++|+++ +++|||++|+++||||||++|||++.+|++++||++|++||+||+||++|+|+
T Consensus 152 av~~d~t~~a~~~a~~l~~aiG~~~~g~~~ttf~~e~~~dl~geq~vl~gg~~~l~~~~~e~l~eaG~~pe~Ay~e~~~e 231 (330)
T PRK05479 152 AVHQDASGNAKDLALAYAKGIGGTRAGVIETTFKEETETDLFGEQAVLCGGLTELIKAGFETLVEAGYQPEMAYFECLHE 231 (330)
T ss_pred EecCCCCHHHHHHHHHHHHHcCCCccceeeeeecccccccchhhHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 9999999999999999999999995 89999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcHHHHHHhcCcchhhhhhhhhcccc---hhHHHHHHHHHHhccCChhhhHHHHhcccccccCCCCCCc
Q 007951 342 ITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASY---YPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFP 418 (583)
Q Consensus 342 l~Glia~li~e~G~~~m~d~vS~~~~aeyg~~~~~~~---~p~~~~m~e~~~~I~sG~far~~~~e~~~~~~~~g~~~~~ 418 (583)
++ ||+|||+++|+.+|+++||| |+|||+|..+.. ..+|+.|+++|++||+|+|+|+|+.+|+ .|.|.|+
T Consensus 232 ~k-~i~dl~~~~g~~~m~~~~s~--ta~~g~~~~~~~~~~~~~~~~m~~~~~~i~~g~fa~~~~~~~~-----~~~~~~~ 303 (330)
T PRK05479 232 LK-LIVDLIYEGGIANMRYSISN--TAEYGDYVSGPRVITEETKKEMKEVLKDIQSGEFAKEWILENK-----AGRPTFK 303 (330)
T ss_pred HH-HHHHHHHHccHHHHHHhcCc--HhhcCccccCCcccCHHHHHHHHHHHHHcCCCHHHHHHHHHhc-----CCcHHHH
Confidence 95 89999999999999999998 779999977643 4689999999999999999999999976 5778887
Q ss_pred --chhhhcChHHHHHHHHHccCCCCC
Q 007951 419 --MGKIDQTRMWKVGERVRSTRPAGD 442 (583)
Q Consensus 419 --~~~i~~~~ie~vG~~lR~~~~~ge 442 (583)
++++++|+||+||++||++|+|.+
T Consensus 304 ~~~~~~~~~~~e~~g~~lr~~~~~~~ 329 (330)
T PRK05479 304 ALRREEAEHPIEKVGAKLRAMMPWIK 329 (330)
T ss_pred HHHHHHhcCcHHHHHHHHHHhccccc
Confidence 346799999999999999999954
No 5
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=100.00 E-value=5.7e-65 Score=528.05 Aligned_cols=307 Identities=33% Similarity=0.536 Sum_probs=279.4
Q ss_pred hcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEecc
Q 007951 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (583)
Q Consensus 108 l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavp 187 (583)
|+| |+|+|||+|+||+++|++|+++ |++++++++.++++++.+.+.|+. +.++.+++++||+|+|++|
T Consensus 1 l~~-kkIgiIG~G~mG~AiA~~L~~s------G~~Viv~~~~~~~~~~~a~~~Gv~-----~~s~~ea~~~ADiVvLaVp 68 (314)
T TIGR00465 1 LKG-KTVAIIGYGSQGHAQALNLRDS------GLNVIVGLRKGGASWKKATEDGFK-----VGTVEEAIPQADLIMNLLP 68 (314)
T ss_pred CCc-CEEEEEeEcHHHHHHHHHHHHC------CCeEEEEECcChhhHHHHHHCCCE-----ECCHHHHHhcCCEEEEeCC
Confidence 578 9999999999999999999999 988888888776778888888987 3468899999999999999
Q ss_pred chHHHH-HHHHHHhcCCCCcEEEEecCchhhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEeec
Q 007951 188 DAAQAD-NYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (583)
Q Consensus 188 d~a~~~-Vl~eI~~~Lk~GaiL~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv~ 266 (583)
|+.+.. +.++|.+++++|.+|+++|||++++++. .||++++|||+|||+|++.+|++|.+| +|++++++++
T Consensus 69 p~~~~~~v~~ei~~~l~~g~iVs~aaG~~i~~~~~---~~~~~~~VvrvmPn~p~~~vr~~~~~G-----~G~~~l~a~~ 140 (314)
T TIGR00465 69 DEVQHEVYEAEIQPLLKEGKTLGFSHGFNIHFVQI---VPPKDVDVVMVAPKGPGTLVREEYKEG-----FGVPTLIAVE 140 (314)
T ss_pred cHhHHHHHHHHHHhhCCCCcEEEEeCCccHhhccc---cCCCCCcEEEECCCCCcHHHHHHhhcC-----CCeeEEEEec
Confidence 995554 5567999999999999999999999865 788899999999999999999999995 7999988899
Q ss_pred CCCCHHHHHHHHHHHHHhCCCc--ccccchhhhhhhhhhhhhhhHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 007951 267 QDVDGRATNVALGWSVALGSPF--TFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITG 344 (583)
Q Consensus 267 qd~sgeale~a~ala~aIG~~~--vieTtf~eE~~sDlfgeqtvLsG~~pAlieAl~d~~Ve~Gl~~e~A~~~~~q~l~G 344 (583)
+|+++++++++++|++++|..| +++|+|++|+++|+|++||+||||+||++.+++|++|++||||++||++++||++|
T Consensus 141 ~~~~~~~~~~~~~~~~~iG~~~~~~~~t~f~~e~~edl~~~~t~l~Gs~pa~v~~~~ealv~~G~~~e~A~~~~~~~~~g 220 (314)
T TIGR00465 141 QDPTGEAMAIALAYAKAIGGGRAGVLETTFKEETESDLFGEQAVLCGGLTALIKAGFDTLVEAGYQPELAYFETVHELKL 220 (314)
T ss_pred CCCCHHHHHHHHHHHHHcCCCccceeechhHhhhhHHhcCcchhHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999994 89999999999999999999999999999999999999999999999999999987
Q ss_pred HHHHHHHHhcHHHHHHhcCcchhhhhhhhhcccc--hhHHHHHHHHHHhccCChhhhHHHHhcccccccCCCCCCc--ch
Q 007951 345 IISKIISTQGMLAVYNSFSGEDKKEFEKAYSASY--YPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFP--MG 420 (583)
Q Consensus 345 lia~li~e~G~~~m~d~vS~~~~aeyg~~~~~~~--~p~~~~m~e~~~~I~sG~far~~~~e~~~~~~~~g~~~~~--~~ 420 (583)
+++|++++|+..|+++||+ |+|||+|..+.. ..+|+.|+++|++||||+|+|+|+.+++ .|.|.|+ ++
T Consensus 221 -~~~l~~e~g~~~l~~~Vss--taeyg~~~~~~~~~~~~~~~~~~~~~~i~~g~fa~~~~~~~~-----~~~~~~~~~~~ 292 (314)
T TIGR00465 221 -IVDLIYEGGITGMRDRISN--TAEYGALTRRRIIKEELKPEMQKILKEIQNGEFAKEWALENE-----AGKPAFNTARK 292 (314)
T ss_pred -HHHHHHHhcHHHHHHHcCC--HHHcCcchhHHHhhHHHHHHHHHHHHHhCCChhhhhhhhhcc-----CCcHHHHHHHH
Confidence 9999999999999999997 778999855432 3478899999999999999999999864 5778877 44
Q ss_pred hhhcChHHHHHHHHHccCCCCC
Q 007951 421 KIDQTRMWKVGERVRSTRPAGD 442 (583)
Q Consensus 421 ~i~~~~ie~vG~~lR~~~~~ge 442 (583)
++++|+||+||++||++|||++
T Consensus 293 ~~~~~~~e~vg~~lr~~~~~~~ 314 (314)
T TIGR00465 293 YESEHEIEKVGKELRAMVPAGK 314 (314)
T ss_pred HHhCCcHHHHHHHHHHhccCCC
Confidence 6799999999999999999974
No 6
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=100.00 E-value=1.5e-39 Score=308.15 Aligned_cols=160 Identities=44% Similarity=0.726 Sum_probs=137.7
Q ss_pred hcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEecc
Q 007951 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (583)
Q Consensus 108 l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavp 187 (583)
|++ |+|+|||||+||+++|+||||| |++|+|++|.++++|++|+++||. +.+..|++++||+|++++|
T Consensus 2 l~~-k~IAViGyGsQG~a~AlNLrDS------G~~V~Vglr~~s~s~~~A~~~Gf~-----v~~~~eAv~~aDvV~~L~P 69 (165)
T PF07991_consen 2 LKG-KTIAVIGYGSQGHAHALNLRDS------GVNVIVGLREGSASWEKAKADGFE-----VMSVAEAVKKADVVMLLLP 69 (165)
T ss_dssp HCT-SEEEEES-SHHHHHHHHHHHHC------C-EEEEEE-TTCHHHHHHHHTT-E-----CCEHHHHHHC-SEEEE-S-
T ss_pred cCC-CEEEEECCChHHHHHHHHHHhC------CCCEEEEecCCCcCHHHHHHCCCe-----eccHHHHHhhCCEEEEeCC
Confidence 788 9999999999999999999999 999999999999999999999998 5799999999999999999
Q ss_pred chHHHHHHH-HHHhcCCCCcEEEEecCchhhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEeec
Q 007951 188 DAAQADNYE-KIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (583)
Q Consensus 188 d~a~~~Vl~-eI~~~Lk~GaiL~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv~ 266 (583)
|..|.++|+ +|.|+|++|++|.++|||+++|- .+.||++++|+|++||+||+.+|++|++| +|+|++++++
T Consensus 70 D~~q~~vy~~~I~p~l~~G~~L~fahGfni~~~---~i~pp~~vdV~mvAPKgpG~~vR~~y~~G-----~Gvp~l~AV~ 141 (165)
T PF07991_consen 70 DEVQPEVYEEEIAPNLKPGATLVFAHGFNIHYG---LIKPPKDVDVIMVAPKGPGHLVRREYVEG-----RGVPALIAVH 141 (165)
T ss_dssp HHHHHHHHHHHHHHHS-TT-EEEESSSHHHHCT---TS---TTSEEEEEEESSSCHHHHHHHHCC-----TS--EEEEEE
T ss_pred hHHHHHHHHHHHHhhCCCCCEEEeCCcchhhcC---cccCCCCCeEEEEecCCCChHHHHHHHcC-----CCceEEEEEE
Confidence 999999995 79999999999999999999874 57999999999999999999999999996 7999999999
Q ss_pred CCCCHHHHHHHHHHHHHhCCC
Q 007951 267 QDVDGRATNVALGWSVALGSP 287 (583)
Q Consensus 267 qd~sgeale~a~ala~aIG~~ 287 (583)
||.|+++++++++|+++||++
T Consensus 142 qD~sg~A~~~ala~A~~iG~~ 162 (165)
T PF07991_consen 142 QDASGKAKELALAYAKAIGGT 162 (165)
T ss_dssp E-SSS-HHHHHHHHHHHTTHH
T ss_pred ECCCchHHHHHHHHHHHhCCc
Confidence 999999999999999999975
No 7
>PF01450 IlvC: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR000506 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine []. The enzyme forms a tetramer of similar but non-identical chains, and requires magnesium as a cofactor.; GO: 0004455 ketol-acid reductoisomerase activity, 0009082 branched chain family amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 1NP3_C 1YRL_C 3FR8_B 3FR7_A.
Probab=100.00 E-value=3.2e-35 Score=275.30 Aligned_cols=141 Identities=28% Similarity=0.453 Sum_probs=124.8
Q ss_pred hhhhhhhhhhhhhhhHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhcCcchhhhhhhh
Q 007951 294 LEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKA 373 (583)
Q Consensus 294 f~eE~~sDlfgeqtvLsG~~pAlieAl~d~~Ve~Gl~~e~A~~~~~q~l~Glia~li~e~G~~~m~d~vS~~~~aeyg~~ 373 (583)
|++|+++||||||++|||+++++|+++||++|++||+||.||++|+|+ +++|+++|+++|+.+|+++||| |++||++
T Consensus 1 F~~E~~sDLfGEq~vL~Ggv~~lv~~~Fe~lve~G~~pE~Ay~e~~~e-~~lI~dli~~~Gi~~M~~~iS~--TAeyG~~ 77 (145)
T PF01450_consen 1 FKEETESDLFGEQAVLCGGVHALVEAGFETLVEAGYSPEIAYFECLHE-TKLIVDLIYEGGIYGMYDSISD--TAEYGAY 77 (145)
T ss_dssp HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHTT--HHHHHHHTHHH-HHHHHHHHHHHHHHHHHHTS-H--HHHHHHH
T ss_pred ChHHHHhhhhcchHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH-HHHHHHHHHHccHHHHHHhcCC--HHHhHHH
Confidence 679999999999999999999999999999999999999999999999 5799999999999999999997 7789998
Q ss_pred hccc-c-hhHHHHHHHHHHhccCChhhhHHHHhcccccccCCCCCCc--chhhhcChHHHHHHHHHccCCCCC
Q 007951 374 YSAS-Y-YPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFP--MGKIDQTRMWKVGERVRSTRPAGD 442 (583)
Q Consensus 374 ~~~~-~-~p~~~~m~e~~~~I~sG~far~~~~e~~~~~~~~g~~~~~--~~~i~~~~ie~vG~~lR~~~~~ge 442 (583)
.... + .+++++|+++|++|+||+|+|+|+.+++. |.+.+. ++++++|++|+||++||++|||.+
T Consensus 78 ~~~~r~~~~~k~~m~~~l~~I~~G~fak~~i~e~~~-----g~~~l~~~~~~~~~~~~e~VG~~lR~~~~~~k 145 (145)
T PF01450_consen 78 TWGPRIIEAVKPLMKEILEDIQSGEFAKEWIEENQA-----GDPRLNAMREKIRNHPIEKVGEKLRAMMPWMK 145 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHT-----TSHHHHHHHHHHSTSHHHHHHHHHHHTHTTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHhcC-----CCHHHHHHHHhhcCCcchhHHHHHHHhccccC
Confidence 5442 3 56899999999999999999999999763 556655 558899999999999999999963
No 8
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.8e-32 Score=278.95 Aligned_cols=218 Identities=19% Similarity=0.270 Sum_probs=196.0
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCC----ceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEecc
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G----~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavp 187 (583)
+||+|||+|+||.+++.+|.++ | .+|++.++..++..+.+.++|+.. ..+..+++.++|+|||++|
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~------g~~~~~~I~v~~~~~e~~~~l~~~~g~~~----~~~~~~~~~~advv~LavK 71 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKS------GALPPEEIIVTNRSEEKRAALAAEYGVVT----TTDNQEAVEEADVVFLAVK 71 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhc------CCCCcceEEEeCCCHHHHHHHHHHcCCcc----cCcHHHHHhhCCEEEEEeC
Confidence 7899999999999999999998 7 378888877666556888888873 5678899999999999999
Q ss_pred chHHHHHHHHHHhcCCCCcE-EEEecCchhhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEeec
Q 007951 188 DAAQADNYEKIFSCMKPNSI-LGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (583)
Q Consensus 188 d~a~~~Vl~eI~~~Lk~Gai-L~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv~ 266 (583)
|+...+++.++.+ +.++++ |++++|+.+..++. .++ +.+|+|+|||+|..+ |+|++. ++..
T Consensus 72 Pq~~~~vl~~l~~-~~~~~lvISiaAGv~~~~l~~---~l~-~~~vvR~MPNt~a~v------------g~g~t~-i~~~ 133 (266)
T COG0345 72 PQDLEEVLSKLKP-LTKDKLVISIAAGVSIETLER---LLG-GLRVVRVMPNTPALV------------GAGVTA-ISAN 133 (266)
T ss_pred hHhHHHHHHHhhc-ccCCCEEEEEeCCCCHHHHHH---HcC-CCceEEeCCChHHHH------------cCccee-eecC
Confidence 9999999999998 667765 68999999999987 777 899999999999999 799999 7778
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhHhhHHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 007951 267 QDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVECI 342 (583)
Q Consensus 267 qd~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvLsG~~pA----lieAl~d~~Ve~Gl~~e~A~~~~~q~l 342 (583)
.+++++.++.+.++++++|.. .++.+++|+..|+++||+|| ++|++.+++|+.|+|+++|++++.|++
T Consensus 134 ~~~~~~~~~~v~~l~~~~G~v--------~~v~E~~~da~TaisGSgPAyv~~~iEal~~agv~~Gl~~~~A~~l~~~t~ 205 (266)
T COG0345 134 ANVSEEDKAFVEALLSAVGKV--------VEVEESLMDAVTALSGSGPAYVFLFIEALADAGVRLGLPREEARELAAQTV 205 (266)
T ss_pred ccCCHHHHHHHHHHHHhcCCe--------EEechHHhhHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 999999999999999999975 34445899999999999999 799999999999999999999999999
Q ss_pred HHHHHHHHHHhcH--HHHHHhcCcch
Q 007951 343 TGIISKIISTQGM--LAVYNSFSGED 366 (583)
Q Consensus 343 ~Glia~li~e~G~--~~m~d~vS~~~ 366 (583)
.| .++|+.++|. ..|+++||.+.
T Consensus 206 ~G-aakll~e~~~~p~~Lr~~VtSPG 230 (266)
T COG0345 206 AG-AAKLLLESGEHPAELRDQVTSPG 230 (266)
T ss_pred HH-HHHHHHhcCCCHHHHHHhCcCCC
Confidence 99 9999999999 79999999754
No 9
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.98 E-value=3.2e-31 Score=270.37 Aligned_cols=219 Identities=18% Similarity=0.273 Sum_probs=187.9
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc----eEEEEecCCcccHHHHH-HcCceecCCCcCCHhhhhccCCeEEEec
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAEAR-AAGFTEENGTLGDIYETISGSDLVLLLI 186 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~----~ViVg~r~~s~s~~~A~-~~G~~~~d~t~~d~~Eav~~ADIVILav 186 (583)
+||+|||+|+||.+++.+|.++ |+ +|++.+++. .+.+.+. +.|+.. +.+..|++++||+||||+
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~------g~~~~~~I~v~~r~~-~~~~~l~~~~g~~~----~~~~~e~~~~aDiIiLav 71 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINK------NIVSPDQIICSDLNV-SNLKNASDKYGITI----TTNNNEVANSADILILSI 71 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHC------CCCCCceEEEECCCH-HHHHHHHHhcCcEE----eCCcHHHHhhCCEEEEEe
Confidence 6899999999999999999987 63 566655543 3344444 478754 567888999999999999
Q ss_pred cchHHHHHHHHHHhcCCCCcE-EEEecCchhhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEee
Q 007951 187 SDAAQADNYEKIFSCMKPNSI-LGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (583)
Q Consensus 187 pd~a~~~Vl~eI~~~Lk~Gai-L~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv 265 (583)
||+...++++++.++++++++ |++++|+++..+++ .++...+|+|+|||+|... |+|++. ++.
T Consensus 72 kP~~~~~vl~~l~~~~~~~~lvISi~AGi~i~~l~~---~l~~~~~vvR~MPN~~~~v------------g~g~t~-~~~ 135 (272)
T PRK12491 72 KPDLYSSVINQIKDQIKNDVIVVTIAAGKSIKSTEN---EFDRKLKVIRVMPNTPVLV------------GEGMSA-LCF 135 (272)
T ss_pred ChHHHHHHHHHHHHhhcCCcEEEEeCCCCcHHHHHH---hcCCCCcEEEECCChHHHH------------cCceEE-EEe
Confidence 999999999999999998875 57999999999877 5566678999999999998 789999 567
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhHhhHHHH----HHHHHHHHHHHcCCCHHHHHHHHHHH
Q 007951 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVEC 341 (583)
Q Consensus 266 ~qd~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvLsG~~pA----lieAl~d~~Ve~Gl~~e~A~~~~~q~ 341 (583)
+++++.+.++.+..+|..+|.. .+..+++|+..++|+||+|| ++|++.|++++.|+|+++|.+++.|+
T Consensus 136 ~~~~~~~~~~~v~~lf~~~G~~--------~~~~E~~~d~~talsgsgPAf~~~~~eal~~a~v~~Gl~~~~A~~l~~~t 207 (272)
T PRK12491 136 NEMVTEKDIKEVLNIFNIFGQT--------EVVNEKLMDVVTSISGSSPAYVYMFIEAMADAAVLGGMPRKQAYKFAAQA 207 (272)
T ss_pred CCCCCHHHHHHHHHHHHcCCCE--------EEEcHHHhhhHHHhccCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 8899999999999999999964 12234688899999999999 79999999999999999999999999
Q ss_pred HHHHHHHHHHHhcH--HHHHHhcCcch
Q 007951 342 ITGIISKIISTQGM--LAVYNSFSGED 366 (583)
Q Consensus 342 l~Glia~li~e~G~--~~m~d~vS~~~ 366 (583)
+.| .++|+.++|. ..++++|+.+.
T Consensus 208 ~~G-~a~ll~~~~~~p~~l~~~V~sPG 233 (272)
T PRK12491 208 VLG-SAKMVLETGIHPGELKDMVCSPG 233 (272)
T ss_pred HHH-HHHHHHhcCCCHHHHHHhCCCCc
Confidence 999 9999999988 79999999764
No 10
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.96 E-value=5.3e-28 Score=246.57 Aligned_cols=220 Identities=15% Similarity=0.195 Sum_probs=182.8
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCC----ceEEEEecCCcccHHH-HHHcC-ceecCCCcCCHhhhhccCCeEEE
Q 007951 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRSFAE-ARAAG-FTEENGTLGDIYETISGSDLVLL 184 (583)
Q Consensus 111 ikkIgIIG~G~mG~A~A~nLrdsl~~~g~G----~~ViVg~r~~s~s~~~-A~~~G-~~~~d~t~~d~~Eav~~ADIVIL 184 (583)
+++|+|||+|+||.+++.+|+++ | .+|++..++.....+. ....+ ... ..+..++++++|+||+
T Consensus 1 m~~I~iIG~G~mG~ala~~L~~~------g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~----~~~~~e~~~~aDvVil 70 (277)
T PRK06928 1 MEKIGFIGYGSMADMIATKLLET------EVATPEEIILYSSSKNEHFNQLYDKYPTVEL----ADNEAEIFTKCDHSFI 70 (277)
T ss_pred CCEEEEECccHHHHHHHHHHHHC------CCCCcccEEEEeCCcHHHHHHHHHHcCCeEE----eCCHHHHHhhCCEEEE
Confidence 37899999999999999999987 6 4676666654332222 22232 221 3577888999999999
Q ss_pred eccchHHHHHHHHHHhcCCCCc-EEEEecCchhhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEE
Q 007951 185 LISDAAQADNYEKIFSCMKPNS-ILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (583)
Q Consensus 185 avpd~a~~~Vl~eI~~~Lk~Ga-iL~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~ali 263 (583)
|+||+...++++++.+++++++ +|+++.|+.+..+++ .+|. .+|||+|||+|..+ |+|++. +
T Consensus 71 avpp~~~~~vl~~l~~~l~~~~~ivS~~aGi~~~~l~~---~~~~-~~vvR~MPN~~~~~------------g~g~t~-~ 133 (277)
T PRK06928 71 CVPPLAVLPLLKDCAPVLTPDRHVVSIAAGVSLDDLLE---ITPG-LQVSRLIPSLTSAV------------GVGTSL-V 133 (277)
T ss_pred ecCHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHH---HcCC-CCEEEEeCccHHHH------------hhhcEE-E
Confidence 9999999999999999998886 567999999888876 4453 58999999999998 789998 5
Q ss_pred eecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhHhhHHHH----HHHHHHHHHHHc-CCCHHHHHHHH
Q 007951 264 AVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTEN-GMNEDLAYKNT 338 (583)
Q Consensus 264 Av~qd~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvLsG~~pA----lieAl~d~~Ve~-Gl~~e~A~~~~ 338 (583)
+...+++.+.++.++.+|..+|.. + +..+++|+..|+|+||+|| +++++.|++++. |+++++|++++
T Consensus 134 ~~~~~~~~~~~~~v~~l~~~~G~~--~------~v~E~~~d~~tal~gsgPA~~~~~~~al~~a~~~~ggl~~~~a~~l~ 205 (277)
T PRK06928 134 AHAETVNEANKSRLEETLSHFSHV--M------TIREENMDIASNLTSSSPGFIAAIFEEFAEAAVRNSSLSDEEAFQFL 205 (277)
T ss_pred ecCCCCCHHHHHHHHHHHHhCCCE--E------EEchhhCceeeeeecCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 668889999999999999999964 1 2223678899999999999 699999999999 79999999999
Q ss_pred HHHHHHHHHHHHHHhcH--HHHHHhcCcch
Q 007951 339 VECITGIISKIISTQGM--LAVYNSFSGED 366 (583)
Q Consensus 339 ~q~l~Glia~li~e~G~--~~m~d~vS~~~ 366 (583)
.|++.| .++|+.++|. ..++++|+.+.
T Consensus 206 ~~~~~G-~a~l~~~~~~~p~~l~~~v~spg 234 (277)
T PRK06928 206 NFALAG-TGKLLVEEDYTFSGTIERVATKG 234 (277)
T ss_pred HHHHHH-HHHHHHccCCCHHHHHHhCCCCC
Confidence 999999 9999999986 99999999764
No 11
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=99.96 E-value=2e-27 Score=240.06 Aligned_cols=213 Identities=18% Similarity=0.253 Sum_probs=178.0
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc----eEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEecc
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~----~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavp 187 (583)
+||+|||+|+||.+++.+|+++ +. ++++.+++.++ .++.. ..++.++++++|+|||++|
T Consensus 4 mkI~iIG~G~mG~ai~~~l~~~------~~~~~~~i~~~~~~~~~-------~~~~~----~~~~~~~~~~~D~Vilavk 66 (260)
T PTZ00431 4 IRVGFIGLGKMGSALAYGIENS------NIIGKENIYYHTPSKKN-------TPFVY----LQSNEELAKTCDIIVLAVK 66 (260)
T ss_pred CEEEEECccHHHHHHHHHHHhC------CCCCcceEEEECCChhc-------CCeEE----eCChHHHHHhCCEEEEEeC
Confidence 7899999999999999999987 52 35544443211 24432 4577888899999999999
Q ss_pred chHHHHHHHHHHhcCCCCcEEEEecCchhhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEeecC
Q 007951 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267 (583)
Q Consensus 188 d~a~~~Vl~eI~~~Lk~GaiL~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv~q 267 (583)
|+...++++++.++++++.+|++++|+++..++. .++.+..++++|||.|... |.|+.. +++.+
T Consensus 67 p~~~~~vl~~i~~~l~~~~iIS~~aGi~~~~l~~---~~~~~~~vvr~mPn~p~~~------------g~g~t~-i~~~~ 130 (260)
T PTZ00431 67 PDLAGKVLLEIKPYLGSKLLISICGGLNLKTLEE---MVGVEAKIVRVMPNTPSLV------------GQGSLV-FCANN 130 (260)
T ss_pred HHHHHHHHHHHHhhccCCEEEEEeCCccHHHHHH---HcCCCCeEEEECCCchhHh------------cceeEE-EEeCC
Confidence 9999999999999988777889999999887765 4455567999999999766 567766 67788
Q ss_pred CCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhHhhHHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 007951 268 DVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVECIT 343 (583)
Q Consensus 268 d~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvLsG~~pA----lieAl~d~~Ve~Gl~~e~A~~~~~q~l~ 343 (583)
+.+.+..+.++.+|+.+|.. .+.+++.|+..++++||+|| +++++.|++++.|+++++|++++.|++.
T Consensus 131 ~~~~~~~~~v~~l~~~~G~~--------~~v~E~~~d~~ta~~gsgPA~~~~~~~al~~~~v~~Gl~~~~a~~l~~~~~~ 202 (260)
T PTZ00431 131 NVDSTDKKKVIDIFSACGII--------QEIKEKDMDIATAISGCGPAYVFLFIESLIDAGVKNGLNRDVSKNLVLQTIL 202 (260)
T ss_pred CCCHHHHHHHHHHHHhCCcE--------EEEChHHcchhhhhcCCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 88999999999999999964 12233578888999999999 7999999999999999999999999999
Q ss_pred HHHHHHHHHhcH--HHHHHhcCcch
Q 007951 344 GIISKIISTQGM--LAVYNSFSGED 366 (583)
Q Consensus 344 Glia~li~e~G~--~~m~d~vS~~~ 366 (583)
| .++|+.++|. ..|+|+|+.+.
T Consensus 203 G-~a~ll~~~~~~~~~l~~~v~spg 226 (260)
T PTZ00431 203 G-SVHMVKASDQPVQQLKDDVCSPG 226 (260)
T ss_pred H-HHHHHHhcCCCHHHHHHhCCCCC
Confidence 9 9999999986 89999999764
No 12
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.94 E-value=1.5e-25 Score=228.04 Aligned_cols=219 Identities=13% Similarity=0.171 Sum_probs=180.8
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCC----ceEEEEecCCccc-HHHHHHcCceecCCCcCCHhhhhccCCeEEEec
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRS-FAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G----~~ViVg~r~~s~s-~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILav 186 (583)
+||+|||+|+||.+++.+|.++ | .++++.+|..++. ...+.+.|+.. ..++.+++++||+||+++
T Consensus 4 mkI~~IG~G~mG~aia~~l~~~------g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~----~~~~~e~~~~aDvVilav 73 (279)
T PRK07679 4 QNISFLGAGSIAEAIIGGLLHA------NVVKGEQITVSNRSNETRLQELHQKYGVKG----THNKKELLTDANILFLAM 73 (279)
T ss_pred CEEEEECccHHHHHHHHHHHHC------CCCCcceEEEECCCCHHHHHHHHHhcCceE----eCCHHHHHhcCCEEEEEe
Confidence 8999999999999999999987 6 5677777654333 33344567754 567888999999999999
Q ss_pred cchHHHHHHHHHHhcCCCCcEEEE-ecCchhhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEee
Q 007951 187 SDAAQADNYEKIFSCMKPNSILGL-SHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (583)
Q Consensus 187 pd~a~~~Vl~eI~~~Lk~GaiL~~-a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv 265 (583)
||+.+.++++++.+.++++++|+. ++|+++..++. ..+.+.+|+++|||+|... +.|++. ++.
T Consensus 74 ~p~~~~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~---~~~~~~~v~r~mPn~~~~~------------~~~~t~-~~~ 137 (279)
T PRK07679 74 KPKDVAEALIPFKEYIHNNQLIISLLAGVSTHSIRN---LLQKDVPIIRAMPNTSAAI------------LKSATA-ISP 137 (279)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHH---HcCCCCeEEEECCCHHHHH------------hcccEE-Eee
Confidence 999999999999999988887664 69999887765 4456789999999998887 567886 666
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhHhhHHHH----HHHHHHHHHHHcCCCHHHHHHHHHHH
Q 007951 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVEC 341 (583)
Q Consensus 266 ~qd~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvLsG~~pA----lieAl~d~~Ve~Gl~~e~A~~~~~q~ 341 (583)
..+.+.+.++.++.+|..+|.. + +..| ++|+..++++|++|+ +++++.|.+++.|+++++|+....++
T Consensus 138 ~~~~~~~~~~~v~~l~~~~G~~--~---~v~e---~~~~~~~a~~Gsgpa~~~~~~eal~e~~~~~Gl~~~~a~~~~~~~ 209 (279)
T PRK07679 138 SKHATAEHIQTAKALFETIGLV--S---VVEE---EDMHAVTALSGSGPAYIYYVVEAMEKAAKKIGLKEDVAKSLILQT 209 (279)
T ss_pred CCCCCHHHHHHHHHHHHhCCcE--E---EeCH---HHhhhHHHhhcCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 7788899999999999999964 1 1223 467788899999999 78999999999999999999999999
Q ss_pred HHHHHHHHHHHhcH--HHHHHhcCcc
Q 007951 342 ITGIISKIISTQGM--LAVYNSFSGE 365 (583)
Q Consensus 342 l~Glia~li~e~G~--~~m~d~vS~~ 365 (583)
+.| .++++.++|. ..+++.++.+
T Consensus 210 ~~g-sa~~~~~~~~~~~~l~~~v~sp 234 (279)
T PRK07679 210 MIG-AAEMLKASEKHPSILRKEITSP 234 (279)
T ss_pred HHH-HHHHHHhcCCCHHHHHHhcCCC
Confidence 998 7899987665 8888999653
No 13
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.94 E-value=2e-25 Score=221.09 Aligned_cols=220 Identities=15% Similarity=0.187 Sum_probs=178.3
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCC---ce-EEEEecCCc-ccHHHHHHcCceecCCCcCCHhhhhccCCeEEEec
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD---IV-VKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G---~~-ViVg~r~~s-~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILav 186 (583)
+||+|||+|+||.+++.+|.+. | .+ +++..|.+. +..+.+...|+.. ..+..++++++|+|++++
T Consensus 5 ~kI~iIG~G~mg~ala~~l~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~DiViiav 74 (245)
T PRK07634 5 HRILFIGAGRMAEAIFSGLLKT------SKEYIEEIIVSNRSNVEKLDQLQARYNVST----TTDWKQHVTSVDTIVLAM 74 (245)
T ss_pred CeEEEECcCHHHHHHHHHHHhC------CCCCcCeEEEECCCCHHHHHHHHHHcCcEE----eCChHHHHhcCCEEEEec
Confidence 7899999999999999999876 5 23 545555443 3334444567653 467888999999999999
Q ss_pred cchHHHHHHHHHHhcCCCCcEEEEecCchhhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEeec
Q 007951 187 SDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (583)
Q Consensus 187 pd~a~~~Vl~eI~~~Lk~GaiL~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv~ 266 (583)
||+.+.++++++.++++...+|+.++|+++..++. .++.+..++++|||.|... |.|++.+ +..
T Consensus 75 p~~~~~~v~~~l~~~~~~~~vis~~~gi~~~~l~~---~~~~~~~v~r~~Pn~a~~v------------~~g~~~~-~~~ 138 (245)
T PRK07634 75 PPSAHEELLAELSPLLSNQLVVTVAAGIGPSYLEE---RLPKGTPVAWIMPNTAAEI------------GKSISLY-TMG 138 (245)
T ss_pred CHHHHHHHHHHHHhhccCCEEEEECCCCCHHHHHH---HcCCCCeEEEECCcHHHHH------------hcCCeEE-eeC
Confidence 99999999999998886433567899999888876 5566678999999999866 6889885 456
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhHhhHHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 007951 267 QDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVECI 342 (583)
Q Consensus 267 qd~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvLsG~~pA----lieAl~d~~Ve~Gl~~e~A~~~~~q~l 342 (583)
.+.+.++.+.+..+|..+|.... ..| +.+...++++||+|+ +++++.+.+++.|+++++|++...+++
T Consensus 139 ~~~~~~~~~~v~~lf~~~G~~~~-----~~e---~~~~~~~a~~gs~pa~~~~~~~a~~~~~~~~Gl~~~~a~~~~~~~~ 210 (245)
T PRK07634 139 QSVNETHKETLQLILKGIGTSQL-----CTE---EEVHQLTAVTGSAPAFLYYFAESLIEATKSYGVDEETAKHLVIQMI 210 (245)
T ss_pred CCCCHHHHHHHHHHHHhCCCEEE-----ECH---HHcchHHhhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 77889999999999999997521 223 456677899999999 799999999999999999999999999
Q ss_pred HHHHHHHHHHhc-HHHHHHhcCcch
Q 007951 343 TGIISKIISTQG-MLAVYNSFSGED 366 (583)
Q Consensus 343 ~Glia~li~e~G-~~~m~d~vS~~~ 366 (583)
.| .++++.+++ ..+++|+|+.+.
T Consensus 211 ~g-~~~~~~~~~~~~~l~~~v~spg 234 (245)
T PRK07634 211 SG-SASMLEQTQDPANLREQVTTPG 234 (245)
T ss_pred HH-HHHHHhCCCCHHHHHHhCCCCC
Confidence 99 889988743 389999998754
No 14
>KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=99.94 E-value=3.1e-26 Score=230.01 Aligned_cols=219 Identities=20% Similarity=0.258 Sum_probs=193.8
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc----eEEEEecCCcccHHH-HHHcCceecCCCcCCHhhhhccCCeEEEec
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAE-ARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~----~ViVg~r~~s~s~~~-A~~~G~~~~d~t~~d~~Eav~~ADIVILav 186 (583)
++|||||.|+|..+++.++..+ |+ +++.... ..++... .+..|... +.++.+.++.+|++++++
T Consensus 1 ~~~gfigag~ma~ala~g~~~~------Gi~~~~~i~~s~~-~~~~~~~~~~~~g~~~----~~~n~~~~~~s~v~~~sv 69 (267)
T KOG3124|consen 1 MKVGFIGAGNMAQALASGFVAS------GIIEANRIWASVQ-TERSLGLMFEALGVKT----VFTNLEVLQASDVVFLSV 69 (267)
T ss_pred CceeEechhhhHHHHHhccccc------CCCchhheeeecC-chhhhhhhhhcCCcee----eechHHHHhhccceeEee
Confidence 4799999999999999999988 76 4444444 4455555 78889875 667789999999999999
Q ss_pred cchHHHHHHHHHHhcCCCCcE-EEEecCchhhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEee
Q 007951 187 SDAAQADNYEKIFSCMKPNSI-LGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (583)
Q Consensus 187 pd~a~~~Vl~eI~~~Lk~Gai-L~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv 265 (583)
+|+.+.+++.++.+.+..+++ ++.++|+.+..+++ .++...+|||+|||+|... |+|+.+ ++.
T Consensus 70 Kp~~i~~vls~~~~~~~~~~iivS~aaG~tl~~l~~---~l~~~~rviRvmpNtp~~v------------~eg~sv-~~~ 133 (267)
T KOG3124|consen 70 KPQVIESVLSEIKPKVSKGKIIVSVAAGKTLSSLES---KLSPPTRVIRVMPNTPSVV------------GEGASV-YAI 133 (267)
T ss_pred cchhHHHHhhcCccccccceEEEEEeecccHHHHHH---hcCCCCceEEecCCChhhh------------hcCcEE-Eee
Confidence 999999999999988888886 56999999888876 5666789999999999998 789996 888
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhHhhHHHH----HHHHHHHHHHHcCCCHHHHHHHHHHH
Q 007951 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVEC 341 (583)
Q Consensus 266 ~qd~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvLsG~~pA----lieAl~d~~Ve~Gl~~e~A~~~~~q~ 341 (583)
..+++.++.+++..++..+|.. +|.++++++..|.|+|++|+ ++|++.|.+|+.|+||.+|+++++|+
T Consensus 134 g~~~~~~D~~l~~~ll~~vG~~--------~evpE~~iDavTgLsGSgPAy~f~~ieaLadGgVkmGlPr~lA~~laaqt 205 (267)
T KOG3124|consen 134 GCHATNEDLELVEELLSAVGLC--------EEVPEKCIDAVTGLSGSGPAYVFVAIEALADGGVKMGLPRQLAYRLAAQT 205 (267)
T ss_pred CCCcchhhHHHHHHHHHhcCcc--------eeCcHHhhhHHhhccCCcHHHHHHHHHHHhccccccCCCHHHHHHHHHHH
Confidence 9999999999999999999975 67777999999999999999 69999999999999999999999999
Q ss_pred HHHHHHHHHHHhcH--HHHHHhcCcch
Q 007951 342 ITGIISKIISTQGM--LAVYNSFSGED 366 (583)
Q Consensus 342 l~Glia~li~e~G~--~~m~d~vS~~~ 366 (583)
++| .+||+.++|. ..++|.||.|.
T Consensus 206 llG-AakMVl~s~qHP~~Lkd~V~SPg 231 (267)
T KOG3124|consen 206 LLG-AAKMVLASGQHPAQLKDDVCSPG 231 (267)
T ss_pred HHh-HHHHHHhccCCcHHHhCCCCCCC
Confidence 999 9999999998 99999999765
No 15
>PLN02688 pyrroline-5-carboxylate reductase
Probab=99.94 E-value=5.9e-25 Score=220.78 Aligned_cols=218 Identities=16% Similarity=0.216 Sum_probs=180.3
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc----eEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEecc
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~----~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavp 187 (583)
|||+|||+|+||.+++++|+++ |+ ++++.++++....+.+.+.|+.. ..++.++++++|+||+++|
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~------g~~~~~~i~v~~~r~~~~~~~~~~~g~~~----~~~~~e~~~~aDvVil~v~ 70 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVAS------GVVPPSRISTADDSNPARRDVFQSLGVKT----AASNTEVVKSSDVIILAVK 70 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHC------CCCCcceEEEEeCCCHHHHHHHHHcCCEE----eCChHHHHhcCCEEEEEEC
Confidence 6899999999999999999998 76 77776244444456666778864 5678889999999999999
Q ss_pred chHHHHHHHHHHhcCCCCcE-EEEecCchhhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEeec
Q 007951 188 DAAQADNYEKIFSCMKPNSI-LGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (583)
Q Consensus 188 d~a~~~Vl~eI~~~Lk~Gai-L~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv~ 266 (583)
|+...+++.++.+.++++++ |++++|+++..++. ..+.. +++++|||.|... |.+... ++..
T Consensus 71 ~~~~~~vl~~l~~~~~~~~~iIs~~~g~~~~~l~~---~~~~~-~vvr~mP~~~~~~------------~~~~~~-l~~~ 133 (266)
T PLN02688 71 PQVVKDVLTELRPLLSKDKLLVSVAAGITLADLQE---WAGGR-RVVRVMPNTPCLV------------GEAASV-MSLG 133 (266)
T ss_pred cHHHHHHHHHHHhhcCCCCEEEEecCCCcHHHHHH---HcCCC-CEEEECCCcHHHH------------hCceEE-EEeC
Confidence 99999999999998989886 56889998776654 33333 7999999999987 456666 5667
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhHhhHHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 007951 267 QDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVECI 342 (583)
Q Consensus 267 qd~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvLsG~~pA----lieAl~d~~Ve~Gl~~e~A~~~~~q~l 342 (583)
...+.+.++.++.++..+|. ++. ..| +.|+..++++|++|+ +++++.|++++.|+++++|+....+++
T Consensus 134 ~~~~~~~~~~v~~l~~~~G~--~~~---~~e---~~~d~~~~~~g~g~a~~~~~~~a~~ea~~~~Gl~~~~a~~~~~~~~ 205 (266)
T PLN02688 134 PAATADDRDLVATLFGAVGK--IWV---VDE---KLLDAVTGLSGSGPAYIFLAIEALADGGVAAGLPRDVALSLAAQTV 205 (266)
T ss_pred CCCCHHHHHHHHHHHHhCCC--EEE---eCH---HHcchhHhhhcCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 77888999999999999995 222 223 577788899999999 689999999999999999999999999
Q ss_pred HHHHHHHHHHhcH--HHHHHhcCcc
Q 007951 343 TGIISKIISTQGM--LAVYNSFSGE 365 (583)
Q Consensus 343 ~Glia~li~e~G~--~~m~d~vS~~ 365 (583)
.| .++|+.++|. ..++++|+.+
T Consensus 206 ~g-s~~l~~~~~~~~~~l~~~v~sp 229 (266)
T PLN02688 206 LG-AAKMVLETGKHPGQLKDMVTSP 229 (266)
T ss_pred HH-HHHHHHhcCCCHHHHHHhCCCC
Confidence 88 8999988887 8899999974
No 16
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.93 E-value=4.5e-24 Score=214.53 Aligned_cols=218 Identities=17% Similarity=0.221 Sum_probs=177.5
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCC---ceEEEEecCCcccHHHHHH-cCceecCCCcCCHhhhhccCCeEEEecc
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD---IVVKVGLRKGSRSFAEARA-AGFTEENGTLGDIYETISGSDLVLLLIS 187 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G---~~ViVg~r~~s~s~~~A~~-~G~~~~d~t~~d~~Eav~~ADIVILavp 187 (583)
++|+|||+|+||.+++..|.++ | .+|.+..|+.+ +.+...+ .|+.. ..+..++++++|+||+++|
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~------g~~~~~v~v~~r~~~-~~~~~~~~~g~~~----~~~~~~~~~~advVil~v~ 71 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLAS------GVPAKDIIVSDPSPE-KRAALAEEYGVRA----ATDNQEAAQEADVVVLAVK 71 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhC------CCCcceEEEEcCCHH-HHHHHHHhcCCee----cCChHHHHhcCCEEEEEcC
Confidence 7899999999999999999988 7 46666666543 3444443 47653 4677888899999999999
Q ss_pred chHHHHHHHHHHhcCCCCcEEEEecCchhhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEeecC
Q 007951 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267 (583)
Q Consensus 188 d~a~~~Vl~eI~~~Lk~GaiL~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv~q 267 (583)
|..+.++++++.+++ +..+|+++.|++...++. .++.+.+++++|||.|... |.|++. +++..
T Consensus 72 ~~~~~~v~~~l~~~~-~~~vvs~~~gi~~~~l~~---~~~~~~~iv~~~P~~p~~~------------~~~~~~-i~~~~ 134 (267)
T PRK11880 72 PQVMEEVLSELKGQL-DKLVVSIAAGVTLARLER---LLGADLPVVRAMPNTPALV------------GAGMTA-LTANA 134 (267)
T ss_pred HHHHHHHHHHHHhhc-CCEEEEecCCCCHHHHHH---hcCCCCcEEEecCCchHHH------------cCceEE-EecCC
Confidence 999999999999887 344678999998777765 4455678999999998765 456665 66788
Q ss_pred CCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhHhhHHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 007951 268 DVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVECIT 343 (583)
Q Consensus 268 d~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvLsG~~pA----lieAl~d~~Ve~Gl~~e~A~~~~~q~l~ 343 (583)
+.+.++++.+..+++.+|....+. .| +.|+..++++|++|+ +++++.+.+++.|+|+++|...+.+++.
T Consensus 135 ~~~~~~~~~v~~l~~~lG~~~~~~----~e---~~~d~~~a~~~~~pa~~~~~~~~~~~~~~~~Gl~~~~a~~~~~~~~~ 207 (267)
T PRK11880 135 LVSAEDRELVENLLSAFGKVVWVD----DE---KQMDAVTAVSGSGPAYVFLFIEALADAGVKLGLPREQARKLAAQTVL 207 (267)
T ss_pred CCCHHHHHHHHHHHHhCCeEEEEC----Ch---HhcchHHHHhcChHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 889999999999999999642111 13 477888999999997 7899999999999999999999999999
Q ss_pred HHHHHHHHHhcH--HHHHHhcCcc
Q 007951 344 GIISKIISTQGM--LAVYNSFSGE 365 (583)
Q Consensus 344 Glia~li~e~G~--~~m~d~vS~~ 365 (583)
| .++++.+.|. ..++++|+.+
T Consensus 208 g-~~~~~~~~~~~~~~l~~~v~tp 230 (267)
T PRK11880 208 G-AAKLLLESGEHPAELRDNVTSP 230 (267)
T ss_pred H-HHHHHHhcCCCHHHHHHhCCCC
Confidence 9 8999998877 8888999864
No 17
>PRK07680 late competence protein ComER; Validated
Probab=99.92 E-value=4e-24 Score=216.77 Aligned_cols=218 Identities=15% Similarity=0.195 Sum_probs=174.1
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc----eEEEEecCCcccHHHHHHc-CceecCCCcCCHhhhhccCCeEEEec
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETISGSDLVLLLI 186 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~----~ViVg~r~~s~s~~~A~~~-G~~~~d~t~~d~~Eav~~ADIVILav 186 (583)
++|+|||+|+||.+++.+|.++ |+ +|.+..|+.++....+.+. |+.. ..++.++++++|+||+++
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~------g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~----~~~~~~~~~~aDiVilav 70 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLES------GAVKPSQLTITNRTPAKAYHIKERYPGIHV----AKTIEEVISQSDLIFICV 70 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHC------CCCCcceEEEECCCHHHHHHHHHHcCCeEE----ECCHHHHHHhCCEEEEec
Confidence 5799999999999999999988 63 5666666543332333333 5653 467888899999999999
Q ss_pred cchHHHHHHHHHHhcCCCCcEE-EEecCchhhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEee
Q 007951 187 SDAAQADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (583)
Q Consensus 187 pd~a~~~Vl~eI~~~Lk~GaiL-~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv 265 (583)
||+...++++++.++++++++| .+++|+++..++. .++ ..++++|||+|... +.|... ++.
T Consensus 71 ~p~~~~~vl~~l~~~l~~~~~iis~~ag~~~~~L~~---~~~--~~~~r~~p~~~~~~------------~~G~t~-~~~ 132 (273)
T PRK07680 71 KPLDIYPLLQKLAPHLTDEHCLVSITSPISVEQLET---LVP--CQVARIIPSITNRA------------LSGASL-FTF 132 (273)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHH---HcC--CCEEEECCChHHHH------------hhccEE-Eee
Confidence 9999999999999999888865 5777788777765 333 36999999988655 357776 445
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhHhhHHHH----HHHHHHHHHHH-cCCCHHHHHHHHHH
Q 007951 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTE-NGMNEDLAYKNTVE 340 (583)
Q Consensus 266 ~qd~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvLsG~~pA----lieAl~d~~Ve-~Gl~~e~A~~~~~q 340 (583)
....+.+.++.+..++..+|.. .+..+++++..+.++|++|+ +++++.+.+++ .|+++++|+..+.+
T Consensus 133 g~~~~~~~~~~~~~ll~~~G~~--------~~i~e~~~~~~~~l~gs~pa~~~~~~~al~~~~~~~~Gl~~~~a~~~~~~ 204 (273)
T PRK07680 133 GSRCSEEDQQKLERLFSNISTP--------LVIEEDITRVSSDIVSCGPAFFSYLLQRFIDAAVEETNISKEEATTLASE 204 (273)
T ss_pred CCCCCHHHHHHHHHHHHcCCCE--------EEEChHhcchhhhhccchHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 6667888899999999999954 12223677788999999999 67999999998 89999999999999
Q ss_pred HHHHHHHHHHHHhcH--HHHHHhcCcch
Q 007951 341 CITGIISKIISTQGM--LAVYNSFSGED 366 (583)
Q Consensus 341 ~l~Glia~li~e~G~--~~m~d~vS~~~ 366 (583)
++.| .++|+.+++. .+|+|+|+.+.
T Consensus 205 ~~~G-~~~l~~~~~~~~~~l~~~v~spg 231 (273)
T PRK07680 205 MLIG-MGKLLEKGLYTLPTLQEKVCVKG 231 (273)
T ss_pred HHHH-HHHHHHhcCCCHHHHHHhCCCCC
Confidence 9999 7799998876 88999999754
No 18
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=99.90 E-value=3.4e-24 Score=230.61 Aligned_cols=131 Identities=15% Similarity=0.234 Sum_probs=115.4
Q ss_pred hhhhhhhHhhHHH-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhcCcchhhhhhhhhcccchh
Q 007951 302 IFGERGILLGAVH-GIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYP 380 (583)
Q Consensus 302 lfgeqtvLsG~~p-AlieAl~d~~Ve~Gl~~e~A~~~~~q~l~Glia~li~e~G~~~m~d~vS~~~~aeyg~~~~~~~~p 380 (583)
-|-++++|+|.+. +.+++.||++|++||+||.||+|++||+ +||++||+|+|+++|+.+||| |||||+|..+ ..
T Consensus 352 ~~~erG~Lm~a~~~~g~e~~FEtLveaGy~PE~AYfE~lhEl-kLIvdLi~e~Gl~~M~~~iSd--TAeyG~y~~g--~~ 426 (487)
T PRK05225 352 EYFDKGVLMVAMVKAGVELAFETMVDSGIIEESAYYESLHEL-PLIANTIARKRLYEMNVVISD--TAEYGNYLFS--HA 426 (487)
T ss_pred HHHhhhhHHHHHHHhhhHHHHHHHHHcCCCHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHhhh--HhhcCCcccC--hH
Confidence 4558899999877 7899999999999999999999999999 699999999999999999998 7899998442 23
Q ss_pred HHHHHHHHHHhccCChhhhHHHHhcccccccCCCCCCc--chhhhcChHHHHHHHHHccCCCCCC
Q 007951 381 CMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFP--MGKIDQTRMWKVGERVRSTRPAGDL 443 (583)
Q Consensus 381 ~~~~m~e~~~~I~sG~far~~~~e~~~~~~~~g~~~~~--~~~i~~~~ie~vG~~lR~~~~~gei 443 (583)
+.+.|+++|++||+|+|+|+| .+|+ .|.|.|+ ++++++|+||+||++||++|+|++.
T Consensus 427 vi~~mk~~l~~Iq~G~fak~~-~e~~-----~g~~~l~~~~~~~~~h~iE~vG~~LR~~m~~m~~ 485 (487)
T PRK05225 427 AVPLLKDFMATLQPGDLGKGL-PSNA-----VDNAQLRDVNEAIRNHPIEQVGKKLRGYMTDMKR 485 (487)
T ss_pred HHHHHHHHHHHcCCCHHHhhH-Hhcc-----CCcHHHHHHHHHHhcCcHHHHHHHHHHHhHhhhc
Confidence 446999999999999999999 7765 4667777 4577999999999999999999864
No 19
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=99.90 E-value=1.6e-22 Score=203.16 Aligned_cols=197 Identities=18% Similarity=0.264 Sum_probs=167.0
Q ss_pred ceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccchHHHHHHHHHHhcCCCCcE-EEEecCchhhhh
Q 007951 141 IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSI-LGLSHGFLLGHL 219 (583)
Q Consensus 141 ~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~a~~~Vl~eI~~~Lk~Gai-L~~a~G~~i~~i 219 (583)
.+|+++.|+.++..+.+.+.|+.. ..++.++++++|+||||+||+.+.++++++.+.+.++++ |++++|+++..+
T Consensus 10 ~~I~v~~R~~e~~~~l~~~~g~~~----~~~~~e~~~~aDiIiLaVkP~~i~~vl~~l~~~~~~~~~ivS~~agi~~~~l 85 (245)
T TIGR00112 10 YDIIVINRSPEKLAALAKELGIVA----SSDAQEAVKEADVVFLAVKPQDLEEVLSELKSEKGKDKLLISIAAGVTLEKL 85 (245)
T ss_pred CeEEEEcCCHHHHHHHHHHcCcEE----eCChHHHHhhCCEEEEEeCHHHHHHHHHHHhhhccCCCEEEEecCCCCHHHH
Confidence 367887776555455556678764 567888999999999999999999999999988776664 679999999888
Q ss_pred hcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhh
Q 007951 220 QSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYR 299 (583)
Q Consensus 220 e~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv~qd~sgeale~a~ala~aIG~~~vieTtf~eE~~ 299 (583)
+. .++.+..++|+|||+|... |.|++. ++...+++.+..+.++.+|..+|.. + +..
T Consensus 86 ~~---~~~~~~~ivR~mPn~~~~~------------~~g~t~-~~~~~~~~~~~~~~v~~lf~~~G~~--~------~v~ 141 (245)
T TIGR00112 86 SQ---LLGGTRRVVRVMPNTPAKV------------GAGVTA-IAANANVSEEDRALVLALFKAVGEV--V------ELP 141 (245)
T ss_pred HH---HcCCCCeEEEECCChHHHH------------hCCeEE-EecCCCCCHHHHHHHHHHHHhCCCE--E------EEC
Confidence 76 5666678999999999988 689988 6668889999999999999999964 1 222
Q ss_pred hhhhhhhhhHhhHHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcH--HHHHHhcCcch
Q 007951 300 SDIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGM--LAVYNSFSGED 366 (583)
Q Consensus 300 sDlfgeqtvLsG~~pA----lieAl~d~~Ve~Gl~~e~A~~~~~q~l~Glia~li~e~G~--~~m~d~vS~~~ 366 (583)
++.|+..++|+||+|| +++++.+++++.|+++++|.+++.|++.| .++|+.++|. ..++++|+.+.
T Consensus 142 E~~~~~~talsgsgPA~~~~~~~al~~~~v~~Gl~~~~A~~lv~~~~~G-~a~l~~~~~~~~~~l~~~v~spg 213 (245)
T TIGR00112 142 EALMDAVTALSGSGPAYVFLFIEALADAGVKQGLPRELALELAAQTVKG-AAKLLEESGEHPALLKDQVTSPG 213 (245)
T ss_pred HHHcchHHhhccCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH-HHHHHHhcCCCHHHHHHcCCCCc
Confidence 3678888999999999 79999999999999999999999999999 9999998876 99999998754
No 20
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.89 E-value=6.7e-22 Score=198.78 Aligned_cols=215 Identities=16% Similarity=0.187 Sum_probs=163.2
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc---eEEEEecCCcccHHHHHHc-CceecCCCcCCHhhhhccCCeEEEecc
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI---VVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETISGSDLVLLLIS 187 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~---~ViVg~r~~s~s~~~A~~~-G~~~~d~t~~d~~Eav~~ADIVILavp 187 (583)
|+|||||+|+||.+++++|++. |+ .+.+..|..++..+.+... |+.. +.++.++++++|+||+++|
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~------g~~~~~i~v~~r~~~~~~~l~~~~~~~~~----~~~~~~~~~~aDvVilav~ 70 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTS------PADVSEIIVSPRNAQIAARLAERFPKVRI----AKDNQAVVDRSDVVFLAVR 70 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhC------CCChheEEEECCCHHHHHHHHHHcCCceE----eCCHHHHHHhCCEEEEEeC
Confidence 4799999999999999999987 64 3445555444333334444 3443 5678889999999999999
Q ss_pred chHHHHHHHHHHhcCCCCcE-EEEecCchhhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEeec
Q 007951 188 DAAQADNYEKIFSCMKPNSI-LGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (583)
Q Consensus 188 d~a~~~Vl~eI~~~Lk~Gai-L~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv~ 266 (583)
|+...++++++. +++|++ |++++|+++..++. ..+.+..++++|||.|... +.|++.+ ++.
T Consensus 71 p~~~~~vl~~l~--~~~~~~vis~~ag~~~~~l~~---~~~~~~~~~r~~P~~~~a~------------~~g~t~~-~~~ 132 (258)
T PRK06476 71 PQIAEEVLRALR--FRPGQTVISVIAATDRAALLE---WIGHDVKLVRAIPLPFVAE------------RKGVTAI-YPP 132 (258)
T ss_pred HHHHHHHHHHhc--cCCCCEEEEECCCCCHHHHHH---HhCCCCCEEEECCCChhhh------------CCCCeEe-cCC
Confidence 999999998873 567775 56889999888876 4455678999999998886 4678774 322
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q 007951 267 QDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGII 346 (583)
Q Consensus 267 qd~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvLsG~~pAlieAl~d~~Ve~Gl~~e~A~~~~~q~l~Gli 346 (583)
.+.++.+++.+|.... +.+|...|+|+..+...+..-.+++++.+.+++.|+++++|++...+++.| .
T Consensus 133 -------~~~~~~l~~~lG~~~~----~~~e~~~d~~~a~~s~~a~~~~~~~~~~~~~~~~Gl~~~~a~~~~~~~~~G-~ 200 (258)
T PRK06476 133 -------DPFVAALFDALGTAVE----CDSEEEYDLLAAASALMATYFGILETATGWLEEQGLKRQKARAYLAPLFAS-L 200 (258)
T ss_pred -------HHHHHHHHHhcCCcEE----ECChHhccceeehhccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH-H
Confidence 2578999999997522 124555666665543333333489999999999999999999999999999 8
Q ss_pred HHH-HHHhcH--HHHHHhcCcch
Q 007951 347 SKI-ISTQGM--LAVYNSFSGED 366 (583)
Q Consensus 347 a~l-i~e~G~--~~m~d~vS~~~ 366 (583)
++| +.+++. ..++++|+.+.
T Consensus 201 ~~l~~~~~~~~~~~l~~~v~spg 223 (258)
T PRK06476 201 AQDAVRSTKTDFSALSREFSTKG 223 (258)
T ss_pred HHHHHhcCCCCHHHHHHhCCCCC
Confidence 888 577776 89999998754
No 21
>PRK06545 prephenate dehydrogenase; Validated
Probab=99.83 E-value=4.2e-19 Score=187.59 Aligned_cols=219 Identities=15% Similarity=0.092 Sum_probs=159.0
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCc-ccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccchH
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s-~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~a 190 (583)
++|+|||+|+||+++|++|++. |+++.+..+... .....+...|+. +....+..+++++||+||+|+|++.
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~------G~~v~i~~~~~~~~~~~~a~~~~~~--~~~~~~~~~~~~~aDlVilavP~~~ 72 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAA------GPDVFIIGYDPSAAQLARALGFGVI--DELAADLQRAAAEADLIVLAVPVDA 72 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhc------CCCeEEEEeCCCHHHHHHHhcCCCC--cccccCHHHHhcCCCEEEEeCCHHH
Confidence 4799999999999999999998 877666554432 222333344544 2223567888999999999999999
Q ss_pred HHHHHHHHHh-cCCCCcEEEEecCchhhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEeecCCC
Q 007951 191 QADNYEKIFS-CMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDV 269 (583)
Q Consensus 191 ~~~Vl~eI~~-~Lk~GaiL~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv~qd~ 269 (583)
..++++++.+ .++++.+|+++++++...++...-..+....+|..|| ++|... ..+..+....+.|.++++++.++.
T Consensus 73 ~~~vl~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~~~~~ig~HP-MaG~e~-sG~~aa~~~lf~g~~~il~~~~~~ 150 (359)
T PRK06545 73 TAALLAELADLELKPGVIVTDVGSVKGAILAEAEALLGDLIRFVGGHP-MAGSHK-SGVAAARADLFENAPWVLTPDDHT 150 (359)
T ss_pred HHHHHHHHhhcCCCCCcEEEeCccccHHHHHHHHHhcCCCCeEEeeCC-cCcCch-hhHHHhcHHHHCCCcEEEecCCCC
Confidence 9999999988 4899999999999975433221113456778999999 666542 122222222335788889999999
Q ss_pred CHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Q 007951 270 DGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKI 349 (583)
Q Consensus 270 sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvLsG~~pAlieAl~d~~Ve~Gl~~e~A~~~~~q~l~Glia~l 349 (583)
+.+.++.++.++..+|+. ++..+..+ .+..+++.+.+|.++-... +...|.+++.++.++.+.+.+ ++++
T Consensus 151 ~~~~~~~v~~l~~~lGa~-~v~~~~~~------HD~~~A~vshlPh~ia~al--~~~~~~~~~~~~~la~~gfrd-~tRi 220 (359)
T PRK06545 151 DPDAVAELKDLLSGTGAK-FVVLDAEE------HDRAVALVSHLPHILASSL--AARLAGEHPLALRLAAGGFRD-ITRI 220 (359)
T ss_pred CHHHHHHHHHHHHHcCCE-EEECCHHH------HhHHHhHhccHHHHHHHHH--HHhhccCchHHHhhhcccccC-Cccc
Confidence 999999999999999974 33333333 3456889999999765544 566688889999999888876 5555
Q ss_pred H
Q 007951 350 I 350 (583)
Q Consensus 350 i 350 (583)
.
T Consensus 221 a 221 (359)
T PRK06545 221 A 221 (359)
T ss_pred c
Confidence 5
No 22
>PF01450 IlvC: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR000506 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine []. The enzyme forms a tetramer of similar but non-identical chains, and requires magnesium as a cofactor.; GO: 0004455 ketol-acid reductoisomerase activity, 0009082 branched chain family amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 1NP3_C 1YRL_C 3FR8_B 3FR7_A.
Probab=99.79 E-value=2.3e-20 Score=175.21 Aligned_cols=123 Identities=23% Similarity=0.209 Sum_probs=106.3
Q ss_pred hHHHHHHHHHHHHHHHHhCCChhhhhhhhHHHHhhhcchhhhhccchhhhhhcchhhhccccccccchh---HHHHHHHH
Q 007951 451 AGVYAALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFD---YILTQQAL 527 (583)
Q Consensus 451 ~g~~~~~~~a~~~~l~~~gh~~se~~ne~~~e~~~sl~p~~~~~g~~~m~~~cs~ta~~g~~~w~~~f~---~~~~~~~~ 527 (583)
.|.+.+++.+++|+|.++||+|..|+.|+++| +.+++++|+++|+++|+++||+||++|+++|.|||. +.+++++|
T Consensus 17 ~Ggv~~lv~~~Fe~lve~G~~pE~Ay~e~~~e-~~lI~dli~~~Gi~~M~~~iS~TAeyG~~~~~~r~~~~~k~~m~~~l 95 (145)
T PF01450_consen 17 CGGVHALVEAGFETLVEAGYSPEIAYFECLHE-TKLIVDLIYEGGIYGMYDSISDTAEYGAYTWGPRIIEAVKPLMKEIL 95 (145)
T ss_dssp THHHHHHHHHHHHHHHHTT--HHHHHHHTHHH-HHHHHHHHHHHHHHHHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH-HHHHHHHHHHccHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 46777799999999999999999999999999 999999999999999999999999999999999999 55589999
Q ss_pred hhhccCCccchhhHHhhhcChHHHHHHHHhccCCcceeecCCCCCcchh
Q 007951 528 VAVDNDAPINGDLISNFLSDPVHGAIEVCAQLRPTVDISVPPDADFVRP 576 (583)
Q Consensus 528 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (583)
+.|++|+..++-+.++...+|. ..+.|.++|++....|+......||
T Consensus 96 ~~I~~G~fak~~i~e~~~g~~~--l~~~~~~~~~~~~e~VG~~lR~~~~ 142 (145)
T PF01450_consen 96 EDIQSGEFAKEWIEENQAGDPR--LNAMREKIRNHPIEKVGEKLRAMMP 142 (145)
T ss_dssp HHHHTTHHHHHHHHHHHTTSHH--HHHHHHHHSTSHHHHHHHHHHHTHT
T ss_pred HHhcCCcchHHHHHHhcCCCHH--HHHHHHhhcCCcchhHHHHHHHhcc
Confidence 9999999888888888888888 5567999999999888754333333
No 23
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=99.77 E-value=1.8e-17 Score=170.56 Aligned_cols=195 Identities=16% Similarity=0.209 Sum_probs=154.8
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceE-EEEecCCcccHHHHHHcCceecCCCcCCH-hhhhccCCeEEEeccch
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVV-KVGLRKGSRSFAEARAAGFTEENGTLGDI-YETISGSDLVLLLISDA 189 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~V-iVg~r~~s~s~~~A~~~G~~~~d~t~~d~-~Eav~~ADIVILavpd~ 189 (583)
++|+|||+|.||+++|+.|+.. |+.+ +++.+.+..+.+.+.+.|++. +...+. .+.+.+||+||++||..
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~------g~~v~i~g~d~~~~~~~~a~~lgv~d--~~~~~~~~~~~~~aD~VivavPi~ 75 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEA------GLVVRIIGRDRSAATLKAALELGVID--ELTVAGLAEAAAEADLVIVAVPIE 75 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHc------CCeEEEEeecCcHHHHHHHhhcCccc--ccccchhhhhcccCCEEEEeccHH
Confidence 7999999999999999999999 8876 556666666778888888874 222333 67888999999999999
Q ss_pred HHHHHHHHHHhcCCCCcEEEEecCchhhhhhcccccCCCCccEEEeccCCCchh-hHHhHhccccccCCCceEEEeecCC
Q 007951 190 AQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPS-VRRLYVQGKEINGAGINSSFAVHQD 268 (583)
Q Consensus 190 a~~~Vl~eI~~~Lk~GaiL~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~-vR~lf~~G~e~~G~Gv~aliAv~qd 268 (583)
+..++++++.|++++|++|+|+.+++...++...-..|+++.||..|| +.|+. ...+| .+..+++|+.+.
T Consensus 76 ~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~~~vg~HP-M~G~~~~~~lf--------~~~~~vltp~~~ 146 (279)
T COG0287 76 ATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDVRFVGGHP-MFGPEADAGLF--------ENAVVVLTPSEG 146 (279)
T ss_pred HHHHHHHHhcccCCCCCEEEecccccHHHHHHHHHhccCCCeeEecCC-CCCCccccccc--------CCCEEEEcCCCC
Confidence 999999999999999999999999984433332235666669999999 55663 22333 468899999998
Q ss_pred CCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhHhhHHHHHHHHHHHHHHHcCC
Q 007951 269 VDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGM 329 (583)
Q Consensus 269 ~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvLsG~~pAlieAl~d~~Ve~Gl 329 (583)
.+.+.++.+++++.++|. +++.++.++||+.- +.+++.-+.+..++...+-+.+.
T Consensus 147 ~~~~~~~~~~~~~~~~ga-~~v~~~~eeHD~~~-----a~vshLpH~~a~al~~~~~~~~~ 201 (279)
T COG0287 147 TEKEWVEEVKRLWEALGA-RLVEMDAEEHDRVM-----AAVSHLPHAAALALANALAKLET 201 (279)
T ss_pred CCHHHHHHHHHHHHHcCC-EEEEcChHHHhHHH-----HHHHHHHHHHHHHHHHHHHhcCc
Confidence 889999999999999995 78999999996552 44566666677777777766665
No 24
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=99.73 E-value=9.2e-17 Score=163.89 Aligned_cols=187 Identities=17% Similarity=0.177 Sum_probs=135.7
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccchHH
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~a~ 191 (583)
|+|+|||+|+||+++|+.|++. |++|++.++ +....+.+.+.|.... ..+..++++++|+||+|+|+...
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~------g~~V~~~d~-~~~~~~~a~~~g~~~~---~~~~~~~~~~aDlVilavp~~~~ 70 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSL------GHTVYGVSR-RESTCERAIERGLVDE---ASTDLSLLKDCDLVILALPIGLL 70 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHC------CCEEEEEEC-CHHHHHHHHHCCCccc---ccCCHhHhcCCCEEEEcCCHHHH
Confidence 5899999999999999999998 888766554 4556777878886531 22333578999999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEecCchhhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEeecCCCCH
Q 007951 192 ADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDG 271 (583)
Q Consensus 192 ~~Vl~eI~~~Lk~GaiL~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv~qd~sg 271 (583)
.++++++.++++++.+|+++++++...++... +....+|+.|| ++|... ..+..+......|.++++++.++.+.
T Consensus 71 ~~~~~~l~~~l~~~~ii~d~~Svk~~~~~~~~---~~~~~~v~~HP-m~G~~~-~g~~~a~~~lf~g~~~~l~p~~~~~~ 145 (279)
T PRK07417 71 LPPSEQLIPALPPEAIVTDVGSVKAPIVEAWE---KLHPRFVGSHP-MAGTAE-SGVEAGQRGLFKNRPWVLTPTENTDL 145 (279)
T ss_pred HHHHHHHHHhCCCCcEEEeCcchHHHHHHHHH---HhhCCceeeCC-cCCCCc-chHHHhhHHHhCCCcEEEccCCCCCH
Confidence 99999999999999999999999865443311 11225999999 333321 11222222223468888999999999
Q ss_pred HHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhHhhHHHHHHHHH
Q 007951 272 RATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESL 320 (583)
Q Consensus 272 eale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvLsG~~pAlieAl 320 (583)
++++.++.++..+|.. +++.+..+| | ....+++.+|.++-..
T Consensus 146 ~~~~~v~~l~~~lG~~-~v~~~~~~h---D---~~~a~~shlp~~~a~~ 187 (279)
T PRK07417 146 NALAIVEELAVSLGSK-IYTADPEEH---D---RAVALISHLPVMVSAA 187 (279)
T ss_pred HHHHHHHHHHHHcCCE-EEEcCHHHH---H---HHHHHHcchHHHHHHH
Confidence 9999999999999963 555555555 3 4466778888865533
No 25
>PRK08655 prephenate dehydrogenase; Provisional
Probab=99.72 E-value=9.3e-16 Score=166.58 Aligned_cols=198 Identities=17% Similarity=0.175 Sum_probs=151.3
Q ss_pred CEEEEEc-cchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccchH
Q 007951 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (583)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~a 190 (583)
|+|+||| +|+||.++|+.|++. |++|++..++.+...+.+.+.|+.. ..+..++++++|+||+|+|+..
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~------G~~V~v~~r~~~~~~~~a~~~gv~~----~~~~~e~~~~aDvVIlavp~~~ 70 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEK------GFEVIVTGRDPKKGKEVAKELGVEY----ANDNIDAAKDADIVIISVPINV 70 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHC------CCEEEEEECChHHHHHHHHHcCCee----ccCHHHHhccCCEEEEecCHHH
Confidence 5899997 899999999999998 8888777766544446677778753 4577888999999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEecCch---hhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEeecC
Q 007951 191 QADNYEKIFSCMKPNSILGLSHGFL---LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267 (583)
Q Consensus 191 ~~~Vl~eI~~~Lk~GaiL~~a~G~~---i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv~q 267 (583)
..++++++.+++++|++|+++++++ ...+.. .+|.++.||..||. .|+.. ..| .|..+++++..
T Consensus 71 ~~~vl~~l~~~l~~~~iViDvsSvK~~~~~~l~~---~~~~~~~~V~~HPm-aGp~~-~~~--------~g~~~il~p~~ 137 (437)
T PRK08655 71 TEDVIKEVAPHVKEGSLLMDVTSVKERPVEAMEE---YAPEGVEILPTHPM-FGPRT-PSL--------KGQVVILTPTE 137 (437)
T ss_pred HHHHHHHHHhhCCCCCEEEEcccccHHHHHHHHH---hcCCCCEEEEcCCC-CCCCC-ccc--------CCCEEEEecCC
Confidence 9999999999999999999888764 333433 45668899999993 33321 122 35677788888
Q ss_pred CCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhH-hhHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 007951 268 DVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGIL-LGAVHGIVESLFRRFTENGMNEDLAYKNTV 339 (583)
Q Consensus 268 d~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvL-sG~~pAlieAl~d~~Ve~Gl~~e~A~~~~~ 339 (583)
+.+.++.+.+.+++..+|+ +++.++.++|++. .+. ++.-+.+.-++...+.+.|++++.+..++.
T Consensus 138 ~~~~~~~~~v~~ll~~~G~-~v~~~~~e~HD~~------~a~vs~lph~~a~al~~~l~~~g~~~~~~~~~a~ 203 (437)
T PRK08655 138 KRSNPWFDKVKNFLEKEGA-RVIVTSPEEHDRI------MSVVQGLTHFAYISIASTLKRLGVDIKESRKFAS 203 (437)
T ss_pred CCCHHHHHHHHHHHHHcCC-EEEECCHHHHHHH------HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhcC
Confidence 7888999999999999996 4666667776433 333 444444667777788888999998876654
No 26
>PRK08507 prephenate dehydrogenase; Validated
Probab=99.72 E-value=5.2e-16 Score=157.75 Aligned_cols=194 Identities=17% Similarity=0.149 Sum_probs=136.0
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc--eEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccch
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~--~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~ 189 (583)
+||+|||+|+||.++|++|++. |+ +|++ .+.++...+.+.+.|+... ..+..++. ++|+||+|+|+.
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~------g~~~~v~~-~d~~~~~~~~~~~~g~~~~---~~~~~~~~-~aD~Vilavp~~ 69 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEK------GLISKVYG-YDHNELHLKKALELGLVDE---IVSFEELK-KCDVIFLAIPVD 69 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhc------CCCCEEEE-EcCCHHHHHHHHHCCCCcc---cCCHHHHh-cCCEEEEeCcHH
Confidence 5899999999999999999988 75 5544 4444555677778887521 34666665 599999999999
Q ss_pred HHHHHHHHHHhcCCCCcEEEEecCchhhhhhcccccCCCCccEEEeccCC------CchhhHHhHhccccccCCCceEEE
Q 007951 190 AQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKG------MGPSVRRLYVQGKEINGAGINSSF 263 (583)
Q Consensus 190 a~~~Vl~eI~~~Lk~GaiL~~a~G~~i~~ie~~~i~~p~dv~VI~v~Png------Pg~~vR~lf~~G~e~~G~Gv~ali 263 (583)
.+.+++.++.+ ++++++|+++...+....+...-. ....||+.||+. |.....++| .|..+++
T Consensus 70 ~~~~~~~~l~~-l~~~~iv~d~gs~k~~i~~~~~~~--~~~~~v~~hPmaG~e~~Gp~~a~~~l~--------~g~~~il 138 (275)
T PRK08507 70 AIIEILPKLLD-IKENTTIIDLGSTKAKIIESVPKH--IRKNFIAAHPMAGTENSGPKAAIKGLY--------EGKVVVL 138 (275)
T ss_pred HHHHHHHHHhc-cCCCCEEEECccchHHHHHHHHHh--cCCCEEecCCcCcCchhhHHhccHHHh--------CCCeEEE
Confidence 99999999999 999999988766653322210001 135799999974 333333333 3677778
Q ss_pred eecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhHhhHHHHHHHHHHHHHHHcCCCHHHH
Q 007951 264 AVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLA 334 (583)
Q Consensus 264 Av~qd~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvLsG~~pAlieAl~d~~Ve~Gl~~e~A 334 (583)
++..+.+.++.+.++.+++.+|. +++.++..+|+..- +.+++.-+.+..++.+.+. .+.+++..
T Consensus 139 ~~~~~~~~~~~~~v~~l~~~~G~-~~~~~~~~~hD~~~-----a~vs~lph~~a~~l~~~~~-~~~~~~~~ 202 (275)
T PRK08507 139 CDVEKSGEKHQERAKEIFSGLGM-RIVYMDAKEHDLHA-----AYISHLPHIISFALANTVL-KEEDERNI 202 (275)
T ss_pred ecCCCCCHHHHHHHHHHHHHhCC-EEEEeCHHHHHHHH-----HHHhHHHHHHHHHHHHHHH-hcCChHHH
Confidence 88888888999999999999996 56676666663331 2345555556666666664 45555543
No 27
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=99.69 E-value=2.1e-15 Score=155.63 Aligned_cols=186 Identities=18% Similarity=0.221 Sum_probs=137.7
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc--eEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccch
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~--~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~ 189 (583)
++|+|||+|+||.++++.|++. |+ +|++.++. +...+.+.+.|+.. ....+..++++++|+||+|+|+.
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~------g~~~~V~~~dr~-~~~~~~a~~~g~~~--~~~~~~~~~~~~aDvViiavp~~ 77 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRL------GLAGEIVGADRS-AETRARARELGLGD--RVTTSAAEAVKGADLVILCVPVG 77 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc------CCCcEEEEEECC-HHHHHHHHhCCCCc--eecCCHHHHhcCCCEEEECCCHH
Confidence 7899999999999999999988 74 66655554 44567777788642 12356778889999999999999
Q ss_pred HHHHHHHHHHhcCCCCcEEEEecCchhhhhhcccccCCCCccEEEeccCCC------chhhHHhHhccccccCCCceEEE
Q 007951 190 AQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGM------GPSVRRLYVQGKEINGAGINSSF 263 (583)
Q Consensus 190 a~~~Vl~eI~~~Lk~GaiL~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngP------g~~vR~lf~~G~e~~G~Gv~ali 263 (583)
...++++++.+++++|.+|+++++++...++...-..+.++.+|..||-.. +....++| .|.++++
T Consensus 78 ~~~~v~~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~~~~~~v~~hPm~g~e~~G~~~a~~~l~--------~g~~~~l 149 (307)
T PRK07502 78 ASGAVAAEIAPHLKPGAIVTDVGSVKASVIAAMAPHLPEGVHFIPGHPLAGTEHSGPDAGFAELF--------ENRWCIL 149 (307)
T ss_pred HHHHHHHHHHhhCCCCCEEEeCccchHHHHHHHHHhCCCCCeEEeCCCCCCCcccchhhcCHHHH--------CCCeEEE
Confidence 999999999999999999999988774433221113456778999999432 21222333 3577888
Q ss_pred eecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhHhhHHHHHHHHHH
Q 007951 264 AVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLF 321 (583)
Q Consensus 264 Av~qd~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvLsG~~pAlieAl~ 321 (583)
++....+.++++.++.++..+|.. ++..+.++| +.++++++.+|.++-.++
T Consensus 150 ~~~~~~~~~~~~~~~~l~~~lG~~-~~~~~~~~h------D~~~A~~s~lph~~a~~l 200 (307)
T PRK07502 150 TPPEGTDPAAVARLTAFWRALGAR-VEEMDPEHH------DLVLAITSHLPHLIAYTI 200 (307)
T ss_pred eCCCCCCHHHHHHHHHHHHHcCCE-EEEcCHHHH------hHHHHHHhhHHHHHHHHH
Confidence 888888889999999999999974 444444444 356888999999765554
No 28
>PLN02256 arogenate dehydrogenase
Probab=99.67 E-value=2.3e-15 Score=156.60 Aligned_cols=165 Identities=16% Similarity=0.133 Sum_probs=126.2
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhh-ccCCeEEEeccchH
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLLISDAA 190 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav-~~ADIVILavpd~a 190 (583)
++|+|||+|+||+++++.|++. |++|++.++.. ..+.+.+.|+.. ..+.++++ .++|+||+|+|+..
T Consensus 37 ~kI~IIG~G~mG~slA~~L~~~------G~~V~~~d~~~--~~~~a~~~gv~~----~~~~~e~~~~~aDvVilavp~~~ 104 (304)
T PLN02256 37 LKIGIVGFGNFGQFLAKTFVKQ------GHTVLATSRSD--YSDIAAELGVSF----FRDPDDFCEEHPDVVLLCTSILS 104 (304)
T ss_pred CEEEEEeeCHHHHHHHHHHHhC------CCEEEEEECcc--HHHHHHHcCCee----eCCHHHHhhCCCCEEEEecCHHH
Confidence 7999999999999999999987 88877665553 246677778764 45777776 47999999999999
Q ss_pred HHHHHHHH-HhcCCCCcEEEEecCch---hhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEeec
Q 007951 191 QADNYEKI-FSCMKPNSILGLSHGFL---LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (583)
Q Consensus 191 ~~~Vl~eI-~~~Lk~GaiL~~a~G~~---i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv~ 266 (583)
..++++++ .++++++++|+++.+++ +..++. .++.+.+||++||+.+...-...| .+.+.++++.
T Consensus 105 ~~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~---~l~~~~~~V~~HPmaG~e~~~~~~--------~~~~~~~~~~ 173 (304)
T PLN02256 105 TEAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQ---VLPEEFDILCTHPMFGPESGKGGW--------AGLPFVYDKV 173 (304)
T ss_pred HHHHHHhhhhhccCCCCEEEecCCchHHHHHHHHH---hCCCCCeEEecCCCCCCCCCcccc--------CCCeEEEecc
Confidence 99999998 68899999999887764 334443 456678999999976444311111 3456655543
Q ss_pred ----CCCCHHHHHHHHHHHHHhCCCcccccchhhhhhh
Q 007951 267 ----QDVDGRATNVALGWSVALGSPFTFATTLEQEYRS 300 (583)
Q Consensus 267 ----qd~sgeale~a~ala~aIG~~~vieTtf~eE~~s 300 (583)
.+.++++++.++.+++.+|+ ++++++.++|++.
T Consensus 174 ~i~~~~~~~~~~~~l~~l~~~lGa-~v~~~~~eeHD~~ 210 (304)
T PLN02256 174 RIGDEGEREARCERFLDIFEEEGC-RMVEMSCEEHDRY 210 (304)
T ss_pred eecCCCCCHHHHHHHHHHHHHCCC-EEEEeCHHHHhHH
Confidence 45577899999999999996 6888899999555
No 29
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=99.65 E-value=5.4e-15 Score=168.94 Aligned_cols=215 Identities=15% Similarity=0.099 Sum_probs=153.0
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc--eEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccch
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~--~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~ 189 (583)
++|+|||+|+||.++++.|+.. |+ +|++.+++ ....+.+.+.|+.. ....+..++++++|+||+++|++
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~------G~~~~V~~~d~~-~~~~~~a~~~g~~~--~~~~~~~~~~~~aDvVilavp~~ 74 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRER------GLAREVVAVDRR-AKSLELAVSLGVID--RGEEDLAEAVSGADVIVLAVPVL 74 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc------CCCCEEEEEECC-hhHHHHHHHCCCCC--cccCCHHHHhcCCCEEEECCCHH
Confidence 7899999999999999999988 73 66555544 44467777888752 12456778899999999999999
Q ss_pred HHHHHHHHHHhcCCCCcEEEEecCch---hhhhhcccccCCCCccEEEeccCCCc--hhhHHhHhccccccCCCceEEEe
Q 007951 190 AQADNYEKIFSCMKPNSILGLSHGFL---LGHLQSMGLDFPKNIGVIAVCPKGMG--PSVRRLYVQGKEINGAGINSSFA 264 (583)
Q Consensus 190 a~~~Vl~eI~~~Lk~GaiL~~a~G~~---i~~ie~~~i~~p~dv~VI~v~PngPg--~~vR~lf~~G~e~~G~Gv~aliA 264 (583)
...++++++.++++++.+|+++++++ +..++. .++. ..++++|+.|. .... .+.........|.+++++
T Consensus 75 ~~~~vl~~l~~~~~~~~ii~d~~svk~~~~~~l~~---~~~~--~~~r~~~~hPm~G~~~~-g~~~a~~~l~~~~~~~~~ 148 (735)
T PRK14806 75 AMEKVLADLKPLLSEHAIVTDVGSTKGNVVDAARA---VFGE--LPAGFVPGHPIAGSEKS-GVHAANADLFRNHKVILT 148 (735)
T ss_pred HHHHHHHHHHHhcCCCcEEEEcCCCchHHHHHHHH---hccc--cCCeEEecCCcCcCCcc-hhhhhhhHHhCCCeEEEE
Confidence 99999999999999999999999987 444433 3332 13445555552 2211 010000011134567788
Q ss_pred ecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhHhhHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 007951 265 VHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG-IVESLFRRFTENGMNEDLAYKNTVECIT 343 (583)
Q Consensus 265 v~qd~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvLsG~~pA-lieAl~d~~Ve~Gl~~e~A~~~~~q~l~ 343 (583)
+....+.++.+.++.+++.+|.. ++..+ + +.++..++++|++|+ +.-++.+.+.+.|.. ..+++++.+.+.
T Consensus 149 ~~~~~~~~~~~~~~~l~~~~G~~-~~~~~---~---~~hD~~~a~~~~~ph~~~~~l~~~l~~~~~~-~~~~~~a~~~f~ 220 (735)
T PRK14806 149 PLAETDPAALARVDRLWRAVGAD-VLHMD---V---AHHDEVLAATSHLPHLLAFSLVDQLANREDN-LDIFRYAAGGFR 220 (735)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCE-EEEcC---H---HHHhHHHHHhcchHHHHHHHHHHHHhhcCCh-hHHHhhhccchh
Confidence 88888999999999999999963 22222 2 345577899999999 777888888877764 467888888776
Q ss_pred HHHHHHH
Q 007951 344 GIISKII 350 (583)
Q Consensus 344 Glia~li 350 (583)
+ ++++.
T Consensus 221 ~-~tRia 226 (735)
T PRK14806 221 D-FTRIA 226 (735)
T ss_pred c-ccccc
Confidence 5 56665
No 30
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=99.64 E-value=2.8e-15 Score=151.93 Aligned_cols=189 Identities=20% Similarity=0.193 Sum_probs=130.8
Q ss_pred HHHHHHHhhhhhcCC--ceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccchHHHHHHHHHHhcCC
Q 007951 126 QAQNLRDSLAEAKSD--IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMK 203 (583)
Q Consensus 126 ~A~nLrdsl~~~g~G--~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~a~~~Vl~eI~~~Lk 203 (583)
+|+.|+++ | ++ +++.+.++...+.|++.|+... ..+..++++++|+||||+|+....++++++.++++
T Consensus 1 ~A~aL~~~------g~~~~-v~g~d~~~~~~~~a~~~g~~~~---~~~~~~~~~~~DlvvlavP~~~~~~~l~~~~~~~~ 70 (258)
T PF02153_consen 1 IALALRKA------GPDVE-VYGYDRDPETLEAALELGIIDE---ASTDIEAVEDADLVVLAVPVSAIEDVLEEIAPYLK 70 (258)
T ss_dssp HHHHHHHT------TTTSE-EEEE-SSHHHHHHHHHTTSSSE---EESHHHHGGCCSEEEE-S-HHHHHHHHHHHHCGS-
T ss_pred ChHHHHhC------CCCeE-EEEEeCCHHHHHHHHHCCCeee---ccCCHhHhcCCCEEEEcCCHHHHHHHHHHhhhhcC
Confidence 57888888 6 45 4677777788899999999842 22336789999999999999999999999999999
Q ss_pred CCcEEEEecCchhhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEeecCCCCHHHHHHHHHHHHH
Q 007951 204 PNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVA 283 (583)
Q Consensus 204 ~GaiL~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv~qd~sgeale~a~ala~a 283 (583)
+|++|+|+++++...++...-.+|.+++||.+|| +.|++. ..|.........|.++++++..+.+.++++.++.++..
T Consensus 71 ~~~iv~Dv~SvK~~~~~~~~~~~~~~~~~v~~HP-M~G~e~-~G~~~a~~~lf~g~~~il~p~~~~~~~~~~~~~~l~~~ 148 (258)
T PF02153_consen 71 PGAIVTDVGSVKAPIVEAMERLLPEGVRFVGGHP-MAGPEK-SGPEAADADLFEGRNWILCPGEDTDPEALELVEELWEA 148 (258)
T ss_dssp TTSEEEE--S-CHHHHHHHHHHHTSSGEEEEEEE-SCSTSS-SSGGG-TTTTTTTSEEEEEECTTS-HHHHHHHHHHHHH
T ss_pred CCcEEEEeCCCCHHHHHHHHHhcCcccceeecCC-CCCCcc-ccchhhcccccCCCeEEEeCCCCChHHHHHHHHHHHHH
Confidence 9999999999974433222225567899999999 666642 23333333445689999999999888999999999999
Q ss_pred hCCCcccccchhhhhhhhhhhhhhhHhhHHHHHHHHHHHHHHHcCCCHH
Q 007951 284 LGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNED 332 (583)
Q Consensus 284 IG~~~vieTtf~eE~~sDlfgeqtvLsG~~pAlieAl~d~~Ve~Gl~~e 332 (583)
+|+ +++.++.++|++.- +.+++.-+.+.-++...+.+.+.+.+
T Consensus 149 ~Ga-~~~~~~~eeHD~~~-----A~vshlpH~~a~al~~~~~~~~~~~~ 191 (258)
T PF02153_consen 149 LGA-RVVEMDAEEHDRIM-----AYVSHLPHLLASALANTLAELSSDDP 191 (258)
T ss_dssp CT--EEEE--HHHHHHHH-----HHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCC-EEEEcCHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhcCCChH
Confidence 997 68888999996663 33444444455566655554443333
No 31
>PRK08818 prephenate dehydrogenase; Provisional
Probab=99.60 E-value=2.1e-14 Score=153.15 Aligned_cols=153 Identities=14% Similarity=0.086 Sum_probs=118.0
Q ss_pred CEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccchH
Q 007951 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (583)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~a 190 (583)
++|+|||+ |+||+++|+.|++. .+++|+ +.+.. |....+..+++++||+||+|+|+..
T Consensus 5 ~~I~IIGl~GliGgslA~alk~~-----~~~~V~-g~D~~---------------d~~~~~~~~~v~~aDlVilavPv~~ 63 (370)
T PRK08818 5 PVVGIVGSAGAYGRWLARFLRTR-----MQLEVI-GHDPA---------------DPGSLDPATLLQRADVLIFSAPIRH 63 (370)
T ss_pred CEEEEECCCCHHHHHHHHHHHhc-----CCCEEE-EEcCC---------------ccccCCHHHHhcCCCEEEEeCCHHH
Confidence 79999999 99999999999974 166764 55431 1113467788999999999999999
Q ss_pred HHHHHHHHHhc---CCCCcEEEEecCchhhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEeecC
Q 007951 191 QADNYEKIFSC---MKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267 (583)
Q Consensus 191 ~~~Vl~eI~~~---Lk~GaiL~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv~q 267 (583)
..++++++.++ +++|++|+|+++++...++. ..+.+.+||..|| +.|++...+| +|.++++|+..
T Consensus 64 ~~~~l~~l~~~~~~l~~~~iVtDVgSvK~~i~~~---~~~~~~~fVG~HP-MaG~E~s~lf--------~g~~~iltp~~ 131 (370)
T PRK08818 64 TAALIEEYVALAGGRAAGQLWLDVTSIKQAPVAA---MLASQAEVVGLHP-MTAPPKSPTL--------KGRVMVVCEAR 131 (370)
T ss_pred HHHHHHHHhhhhcCCCCCeEEEECCCCcHHHHHH---HHhcCCCEEeeCC-CCCCCCCccc--------CCCeEEEeCCC
Confidence 99999999876 89999999999998544333 1234568999999 5566532233 57899888764
Q ss_pred CCCHHHHHHHHHHHHHhCCCcccccchhhhhhh
Q 007951 268 DVDGRATNVALGWSVALGSPFTFATTLEQEYRS 300 (583)
Q Consensus 268 d~sgeale~a~ala~aIG~~~vieTtf~eE~~s 300 (583)
..+..+.++.|++.+|+ ++++++.++||+.
T Consensus 132 --~~~~~~~v~~l~~~~Ga-~v~~~~aeeHD~~ 161 (370)
T PRK08818 132 --LQHWSPWVQSLCSALQA-ECVYATPEHHDRV 161 (370)
T ss_pred --chhHHHHHHHHHHHcCC-EEEEcCHHHHHHH
Confidence 34557889999999996 6888999999655
No 32
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=99.59 E-value=1.5e-13 Score=145.30 Aligned_cols=250 Identities=13% Similarity=0.159 Sum_probs=157.9
Q ss_pred CEEEEEccchh--------------------HHHHHHHHHHhhhhhcCCceEEEEecCCcc----cHHHHHHcCceecCC
Q 007951 112 NQIGVIGWGSQ--------------------GPAQAQNLRDSLAEAKSDIVVKVGLRKGSR----SFAEARAAGFTEENG 167 (583)
Q Consensus 112 kkIgIIG~G~m--------------------G~A~A~nLrdsl~~~g~G~~ViVg~r~~s~----s~~~A~~~G~~~~d~ 167 (583)
+||.|-|.||| |.++|.+|.+. |++|++++++.+. .++...+.|+..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~MA~~La~a------G~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~--- 71 (342)
T PRK12557 1 MKVSVYGAGNQKLYLEQLNLPEKFGGEPPYGGSRMAIEFAEA------GHDVVLAEPNRSILSEELWKKVEDAGVKV--- 71 (342)
T ss_pred CeeEEEcCcchhHHHHHhCCHHhcCCCCCcCHHHHHHHHHhC------CCeEEEEECCHHHhhHHHHHHHHHCCCEE---
Confidence 57888888887 88999999988 9998888775431 345566778764
Q ss_pred CcCCHhhhhccCCeEEEeccchH-HHHHHHHHHhcCCCCcEEEEecCchhhh----hhcccccCCCCccEEEeccCCCch
Q 007951 168 TLGDIYETISGSDLVLLLISDAA-QADNYEKIFSCMKPNSILGLSHGFLLGH----LQSMGLDFPKNIGVIAVCPKGMGP 242 (583)
Q Consensus 168 t~~d~~Eav~~ADIVILavpd~a-~~~Vl~eI~~~Lk~GaiL~~a~G~~i~~----ie~~~i~~p~dv~VI~v~PngPg~ 242 (583)
..+..+++++||+||+++|+.. ..++++++.+++++|++|++++.+.... +.. .++.....++++|..|+.
T Consensus 72 -asd~~eaa~~ADvVIlaVP~~~~v~~Vl~~L~~~L~~g~IVId~ST~~~~~~s~~l~~---~l~~~~~~~gi~~~~p~~ 147 (342)
T PRK12557 72 -VSDDAEAAKHGEIHILFTPFGKKTVEIAKNILPHLPENAVICNTCTVSPVVLYYSLEG---ELRTKRKDVGISSMHPAA 147 (342)
T ss_pred -eCCHHHHHhCCCEEEEECCCcHHHHHHHHHHHhhCCCCCEEEEecCCCHHHHHHHHHH---HhcccccccCeeecCCcc
Confidence 5678889999999999999988 6789999999999999988877665332 222 223222233444444443
Q ss_pred hhHHhHhccccccCCCceEEE-----eecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhHhhHHHH--
Q 007951 243 SVRRLYVQGKEINGAGINSSF-----AVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG-- 315 (583)
Q Consensus 243 ~vR~lf~~G~e~~G~Gv~ali-----Av~qd~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvLsG~~pA-- 315 (583)
.. |.+ +.|... + +.....+.++++.+..+++++|.. ++... + ........+...+.+
T Consensus 148 v~------Gae--~g~l~V-m~gg~t~~~~~~~~e~~e~v~~LL~a~G~~-v~~~~---~---g~~~~vk~~~n~l~av~ 211 (342)
T PRK12557 148 VP------GTP--QHGHYV-IAGKTTNGTELATEEQIEKCVELAESIGKE-PYVVP---A---DVVSAVADMGSLVTAVA 211 (342)
T ss_pred cc------ccc--cchheE-EeCCCcccccCCCHHHHHHHHHHHHHcCCE-EEEeC---H---HHHHHHHHHHHHHHHHH
Confidence 31 000 112222 2 233345788999999999999963 32221 1 233332222222222
Q ss_pred ---HHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhcCcchhhhhhhhhcccc-------hhHHHH
Q 007951 316 ---IVESLFRRFTENG-MNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASY-------YPCMEI 384 (583)
Q Consensus 316 ---lieAl~d~~Ve~G-l~~e~A~~~~~q~l~Glia~li~e~G~~~m~d~vS~~~~aeyg~~~~~~~-------~p~~~~ 384 (583)
+.|+ +..+.+.| .|++++.+.+.|++.| +++|+.++|+..|.+.+... +--+.+-+-.. .-..++
T Consensus 212 ~a~~aE~-~~l~~~~~~~p~~~~~~~~~~~~~~-~a~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 287 (342)
T PRK12557 212 LSGVLDY-YSVGTKIIKAPKEMIEKQILMTLQT-MASLVETSGVDGLLKALNPE--LLLRSASSMHLLEKQKDLDAALEI 287 (342)
T ss_pred HHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHHH-HHHHHHHhChHHHHHhcCHH--HHhhhHhhCCcchhhhhHHHHHHH
Confidence 2222 22334444 5556677789999998 99999999999999987752 22222211111 124667
Q ss_pred HHHHHHhccC
Q 007951 385 LYECYEDVAA 394 (583)
Q Consensus 385 m~e~~~~I~s 394 (583)
++++++++..
T Consensus 288 ~~~~~~~~~~ 297 (342)
T PRK12557 288 LENLDEDLLK 297 (342)
T ss_pred HHHHHHHHhh
Confidence 7888888643
No 33
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.56 E-value=2.6e-13 Score=139.91 Aligned_cols=217 Identities=12% Similarity=0.138 Sum_probs=143.0
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHH-----cCceecC----------CCcCCHhhh
Q 007951 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----AGFTEEN----------GTLGDIYET 175 (583)
Q Consensus 111 ikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~-----~G~~~~d----------~t~~d~~Ea 175 (583)
+++|+|||+|+||.++|..|..+ |++|++.++.. ...+.+.+ .|..... ....+..++
T Consensus 4 ~~~I~vIGaG~mG~~iA~~l~~~------g~~V~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 76 (311)
T PRK06130 4 IQNLAIIGAGTMGSGIAALFARK------GLQVVLIDVME-GALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAA 76 (311)
T ss_pred ccEEEEECCCHHHHHHHHHHHhC------CCeEEEEECCH-HHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHH
Confidence 58999999999999999999988 98887766543 33333332 1210000 013567788
Q ss_pred hccCCeEEEeccchH--HHHHHHHHHhcCCCCcEE-EEecCchhhhhhcccccCCCCccEEEeccCCCchhhHHhHhccc
Q 007951 176 ISGSDLVLLLISDAA--QADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGK 252 (583)
Q Consensus 176 v~~ADIVILavpd~a--~~~Vl~eI~~~Lk~GaiL-~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~ 252 (583)
+++||+||+++|++. ..+++.++.+.++++++| +.++|+.+..+.+ .++...+|+++||+.|...
T Consensus 77 ~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~~l~~---~~~~~~~~ig~h~~~p~~~--------- 144 (311)
T PRK06130 77 VSGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPITAIAQ---AVTRPERFVGTHFFTPADV--------- 144 (311)
T ss_pred hccCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHh---hcCCcccEEEEccCCCCcc---------
Confidence 999999999999875 457888898888888776 6888988776655 3444568999999999866
Q ss_pred cccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhHhhHHHHHHHHHHHHHHHcCCCHH
Q 007951 253 EINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNED 332 (583)
Q Consensus 253 e~~G~Gv~aliAv~qd~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvLsG~~pAlieAl~d~~Ve~Gl~~e 332 (583)
+. .. .+++....+.+.++.+..++..+|...+.. ..+ ..-| ++...+.+++.-+...+.+.|++++
T Consensus 145 ---~~-l~-~i~~g~~t~~~~~~~v~~l~~~~G~~~v~~---~~d--~~G~----i~nr~~~~~~~Ea~~l~~~g~~~~~ 210 (311)
T PRK06130 145 ---IP-LV-EVVRGDKTSPQTVATTMALLRSIGKRPVLV---KKD--IPGF----IANRIQHALAREAISLLEKGVASAE 210 (311)
T ss_pred ---Cc-eE-EEeCCCCCCHHHHHHHHHHHHHcCCEEEEE---cCC--CCCc----HHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 12 22 355677789999999999999999742111 011 1111 2233334444444455566678998
Q ss_pred HHHHHHHHHH------HHHHHHHHHHhcHHHHHHh
Q 007951 333 LAYKNTVECI------TGIISKIISTQGMLAVYNS 361 (583)
Q Consensus 333 ~A~~~~~q~l------~Glia~li~e~G~~~m~d~ 361 (583)
+.....-+.. +| .-+++-..|+..+.+.
T Consensus 211 ~id~~~~~~~g~~~~~~G-p~~~~D~~Gl~~~~~~ 244 (311)
T PRK06130 211 DIDEVVKWSLGIRLALTG-PLEQRDMNGLDVHLAV 244 (311)
T ss_pred HHHHHHHhcCCCCccCCC-HHHHhhhhccchHHHH
Confidence 8777654331 23 3445555666544433
No 34
>PLN02712 arogenate dehydrogenase
Probab=99.54 E-value=2.6e-13 Score=154.52 Aligned_cols=194 Identities=12% Similarity=0.063 Sum_probs=132.3
Q ss_pred hhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhc-cCCeEEEe
Q 007951 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-GSDLVLLL 185 (583)
Q Consensus 107 ~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~-~ADIVILa 185 (583)
.+++ ++|||||+|+||+++|++|++. |++|++.++.. . .+.+.+.|+.. ..+.++++. .+|+||+|
T Consensus 366 ~~~~-~kIgIIGlG~mG~slA~~L~~~------G~~V~~~dr~~-~-~~~a~~~Gv~~----~~~~~el~~~~aDvVILa 432 (667)
T PLN02712 366 DGSK-LKIAIVGFGNFGQFLAKTMVKQ------GHTVLAYSRSD-Y-SDEAQKLGVSY----FSDADDLCEEHPEVILLC 432 (667)
T ss_pred CCCC-CEEEEEecCHHHHHHHHHHHHC------cCEEEEEECCh-H-HHHHHHcCCeE----eCCHHHHHhcCCCEEEEC
Confidence 3466 8999999999999999999988 88887666653 2 25566778763 567778775 59999999
Q ss_pred ccchHHHHHHHHHHh-cCCCCcEEEEecCch---hhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceE
Q 007951 186 ISDAAQADNYEKIFS-CMKPNSILGLSHGFL---LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINS 261 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~-~Lk~GaiL~~a~G~~---i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~a 261 (583)
+|+....++++++.+ .+++|++|+++.+.+ +..+.. .+|.++++|+.||+.....-+..|.. ..+...|.
T Consensus 433 vP~~~~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~---~l~~~~~~v~~HPm~G~e~~~~G~~~-~~~lf~~~-- 506 (667)
T PLN02712 433 TSILSTEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQ---HLPQDFDILCTHPMFGPESGKNGWNN-LAFVFDKV-- 506 (667)
T ss_pred CChHHHHHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHH---hccCCCceEeeCCCCCccccccchhh-hhhhccCc--
Confidence 999999999999875 689999999887764 334433 55678899999996654431111111 00011111
Q ss_pred EEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhHhhHHHHHHHHHHHHHHHcCCC
Q 007951 262 SFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMN 330 (583)
Q Consensus 262 liAv~qd~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvLsG~~pAlieAl~d~~Ve~Gl~ 330 (583)
+........+..+..+.++..+|+ ++++++.++|++. .+.+-.+|. .+...+++.|++
T Consensus 507 -~v~~~~~~~~~~~~l~~l~~~lGa-~vv~ms~eeHD~~------~A~vShLpH---lla~~L~~~~~~ 564 (667)
T PLN02712 507 -RIGSDDRRVSRCDSFLDIFAREGC-RMVEMSCAEHDWH------AAGSQFITH---TMGRLLEKLGLE 564 (667)
T ss_pred -EeCCCcchHHHHHHHHHHHHHcCC-EEEEeCHHHHHHH------HHHHHHHHH---HHHHHHHHCCCc
Confidence 111222233556667899999996 7889999999633 223334444 334777778875
No 35
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=99.54 E-value=1.3e-12 Score=136.66 Aligned_cols=226 Identities=14% Similarity=0.154 Sum_probs=165.7
Q ss_pred CEEEEEccchh--------------------HHHHHHHHHHhhhhhcCCceEEEEecCCc----ccHHHHHHcCceecCC
Q 007951 112 NQIGVIGWGSQ--------------------GPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSFAEARAAGFTEENG 167 (583)
Q Consensus 112 kkIgIIG~G~m--------------------G~A~A~nLrdsl~~~g~G~~ViVg~r~~s----~s~~~A~~~G~~~~d~ 167 (583)
|||.|-|.||| |.+||.+|.++ |++|+++++..+ ..++...+.|...
T Consensus 1 ~~~~~~g~gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkA------GheV~V~Drnrsa~e~e~~e~LaeaGA~~--- 71 (341)
T TIGR01724 1 MKVSVYGAGNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMA------GHDVVLAEPNREFMSDDLWKKVEDAGVKV--- 71 (341)
T ss_pred CeeEEecCcchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHC------CCEEEEEeCChhhhhhhhhHHHHHCCCee---
Confidence 57888888887 88999999998 999998877533 2345677788875
Q ss_pred CcCCHhhhhccCCeEEEeccchHHH-HHHHHHHhcCCCCcEEEEecCch---hhhhhccccc-CCCCccEEEeccC-CCc
Q 007951 168 TLGDIYETISGSDLVLLLISDAAQA-DNYEKIFSCMKPNSILGLSHGFL---LGHLQSMGLD-FPKNIGVIAVCPK-GMG 241 (583)
Q Consensus 168 t~~d~~Eav~~ADIVILavpd~a~~-~Vl~eI~~~Lk~GaiL~~a~G~~---i~~ie~~~i~-~p~dv~VI~v~Pn-gPg 241 (583)
+.+..|+++++|+||+++|+..+. +++..+.+++++|++|++++-+. ++++=+..+. -++|+.|...||- -|+
T Consensus 72 -AaS~aEAAa~ADVVIL~LPd~aaV~eVl~GLaa~L~~GaIVID~STIsP~t~~~~~e~~l~~~r~d~~v~s~HP~~vP~ 150 (341)
T TIGR01724 72 -VSDDKEAAKHGEIHVLFTPFGKGTFSIARTIIEHVPENAVICNTCTVSPVVLYYSLEKILRLKRTDVGISSMHPAAVPG 150 (341)
T ss_pred -cCCHHHHHhCCCEEEEecCCHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHHHhhcCccccCeeccCCCCCCC
Confidence 678899999999999999988875 78888999999999999886664 2222111222 2579999999993 355
Q ss_pred hhhHHhHhccccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC-cccccchhhhhhhhhhhhhhhHhhHHHH----H
Q 007951 242 PSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP-FTFATTLEQEYRSDIFGERGILLGAVHG----I 316 (583)
Q Consensus 242 ~~vR~lf~~G~e~~G~Gv~aliAv~qd~sgeale~a~ala~aIG~~-~vieTtf~eE~~sDlfgeqtvLsG~~pA----l 316 (583)
+.-.+.|.-+ |... .-..-+++++++....+++.+|.. +++. .++.+..+-+|-.+.+ -
T Consensus 151 ~~~~~~~~~~------~~~~--~~~~~A~ee~i~~~~el~~~~~~~~~~~p--------a~l~~~v~Dm~s~vta~~~~g 214 (341)
T TIGR01724 151 TPQHGHYVIG------GKPT--AGKEMATEEQISKCVELAKSTGKKAYVVP--------ADVTSAVADMGSLVTAVALAG 214 (341)
T ss_pred CCCCceeeec------cccc--cccccCCHHHHHHHHHHHHHhCCCeeecc--------hhhcchhhhHHHHHHHHHHHH
Confidence 5533344442 2221 124457899999999999999975 2232 2566565555555444 3
Q ss_pred HHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhcCc
Q 007951 317 VESLFRRFTE-NGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSG 364 (583)
Q Consensus 317 ieAl~d~~Ve-~Gl~~e~A~~~~~q~l~Glia~li~e~G~~~m~d~vS~ 364 (583)
+-.-++.+++ .|-|.+++-..+.+++.. ++.|+..+|+..|.+.+..
T Consensus 215 il~y~~~~t~i~~ap~~~~~~~~~~~l~~-~a~l~~~~Gi~~~~~~l~p 262 (341)
T TIGR01724 215 VLDYYYVGTQIINAPKEMIEKQILMTLQT-MASLVETSGVEGMAKAINP 262 (341)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHhcCH
Confidence 4455666654 699999999999999875 9999999999999998875
No 36
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=99.52 E-value=9e-13 Score=140.66 Aligned_cols=181 Identities=13% Similarity=0.079 Sum_probs=127.8
Q ss_pred CCCEEEEEc-cchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccc
Q 007951 110 GINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (583)
Q Consensus 110 gikkIgIIG-~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd 188 (583)
.+++|+||| +|.||+++|+.|++. |++|.+.++.. ..+..+++++||+||+|+|+
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~------G~~V~~~d~~~------------------~~~~~~~~~~aDlVilavP~ 152 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLS------GYQVRILEQDD------------------WDRAEDILADAGMVIVSVPI 152 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHC------CCeEEEeCCCc------------------chhHHHHHhcCCEEEEeCcH
Confidence 448999999 999999999999998 99887766531 11456778899999999999
Q ss_pred hHHHHHHHHHHhcCCCCcEEEEecCchhhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEeecCC
Q 007951 189 AAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQD 268 (583)
Q Consensus 189 ~a~~~Vl~eI~~~Lk~GaiL~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv~qd 268 (583)
....++++++.+ +++|++|+++++++...+....-..+ .+||..||.. |+.. .+ ..|...++ ...
T Consensus 153 ~~~~~~~~~l~~-l~~~~iv~Dv~SvK~~~~~~~~~~~~--~~fvg~HPm~-G~~~-----~~----~~~~~vv~--~~~ 217 (374)
T PRK11199 153 HLTEEVIARLPP-LPEDCILVDLTSVKNAPLQAMLAAHS--GPVLGLHPMF-GPDV-----GS----LAKQVVVV--CDG 217 (374)
T ss_pred HHHHHHHHHHhC-CCCCcEEEECCCccHHHHHHHHHhCC--CCEEeeCCCC-CCCC-----cc----cCCCEEEE--cCC
Confidence 999999999998 99999999998875322221100222 2699999933 3331 11 12344433 334
Q ss_pred CCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhHhhHHHH-HHHHHHHHHHHcCCCHHHHHH
Q 007951 269 VDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG-IVESLFRRFTENGMNEDLAYK 336 (583)
Q Consensus 269 ~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvLsG~~pA-lieAl~d~~Ve~Gl~~e~A~~ 336 (583)
.+.++.+.++.++..+|+ +++.++..+|++.- +.++ .+|- +.-++...+.+.|.+.+....
T Consensus 218 ~~~~~~~~~~~l~~~lG~-~v~~~~~~~HD~~~-----a~vs-hLpH~~a~al~~~l~~~~~~~~~~~~ 279 (374)
T PRK11199 218 RQPEAYQWLLEQIQVWGA-RLHRISAVEHDQNM-----AFIQ-ALRHFATFAYGLHLAKENVDLEQLLA 279 (374)
T ss_pred CCchHHHHHHHHHHHCCC-EEEECCHHHHHHHH-----HHHH-HHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 466788999999999996 68888888885552 2344 3355 445556666667888776544
No 37
>PLN02712 arogenate dehydrogenase
Probab=99.51 E-value=3.9e-13 Score=153.04 Aligned_cols=168 Identities=17% Similarity=0.146 Sum_probs=121.1
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhh-ccCCeEEEeccchH
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLLISDAA 190 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav-~~ADIVILavpd~a 190 (583)
++|+|||+|+||+++|++|++. |++|++..+.. ..+.+.+.|+.. ..+..+++ +++|+||+|||+..
T Consensus 53 ~kIgIIG~G~mG~slA~~L~~~------G~~V~~~dr~~--~~~~A~~~Gv~~----~~d~~e~~~~~aDvViLavP~~~ 120 (667)
T PLN02712 53 LKIAIIGFGNYGQFLAKTLISQ------GHTVLAHSRSD--HSLAARSLGVSF----FLDPHDLCERHPDVILLCTSIIS 120 (667)
T ss_pred CEEEEEccCHHHHHHHHHHHHC------CCEEEEEeCCH--HHHHHHHcCCEE----eCCHHHHhhcCCCEEEEcCCHHH
Confidence 7899999999999999999998 88876666552 235677888764 56777755 56999999999999
Q ss_pred HHHHHHHHH-hcCCCCcEEEEecCchhhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEee----
Q 007951 191 QADNYEKIF-SCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV---- 265 (583)
Q Consensus 191 ~~~Vl~eI~-~~Lk~GaiL~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv---- 265 (583)
..++++++. +++++|++|+++..++...++...-.+|.+.+||..||.. |+.. ...| -.|.+.++..
T Consensus 121 ~~~vl~~l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l~~~~~~v~~HPMa-G~e~---~~~g----~~~~~~~~~~~~~~ 192 (667)
T PLN02712 121 TENVLKSLPLQRLKRNTLFVDVLSVKEFAKNLLLDYLPEDFDIICSHPMF-GPQS---AKHG----WDGLRFVYEKVRIG 192 (667)
T ss_pred HHHHHHhhhhhcCCCCeEEEECCCCcHHHHHHHHHhcCCCCeEEeeCCcC-CCcc---ccch----hccCcEEEeeccCC
Confidence 999999986 7899999999998887321111111456788999999943 5542 1111 1234454542
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhh
Q 007951 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYRS 300 (583)
Q Consensus 266 ~qd~sgeale~a~ala~aIG~~~vieTtf~eE~~s 300 (583)
......+..+..+.+|..+|+ ++++++.++|++.
T Consensus 193 ~~~~~~~~~~~l~~l~~~lGa-~v~~ms~eeHD~~ 226 (667)
T PLN02712 193 NEELRVSRCKSFLEVFEREGC-KMVEMSCTEHDKY 226 (667)
T ss_pred CccccHHHHHHHHHHHHHcCC-EEEEeCHHHHHHH
Confidence 222223456777899999996 7888899999544
No 38
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.46 E-value=7.8e-13 Score=134.91 Aligned_cols=153 Identities=17% Similarity=0.164 Sum_probs=116.1
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccH----------HHHHHcCceec--------C-CCcCC
Q 007951 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF----------AEARAAGFTEE--------N-GTLGD 171 (583)
Q Consensus 111 ikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~----------~~A~~~G~~~~--------d-~t~~d 171 (583)
++||+|||.|.||.++|..+..+ |++|++.+++.++.. +...+.|.... . ....+
T Consensus 3 ~~kI~VIG~G~mG~~ia~~la~~------g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~ 76 (282)
T PRK05808 3 IQKIGVIGAGTMGNGIAQVCAVA------GYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTD 76 (282)
T ss_pred ccEEEEEccCHHHHHHHHHHHHC------CCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCC
Confidence 47899999999999999999988 988877655433211 23334442100 0 00234
Q ss_pred HhhhhccCCeEEEeccchHH--HHHHHHHHhcCCCCcEE-EEecCchhhhhhcccccCCCCccEEEeccCCCchhhHHhH
Q 007951 172 IYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLY 248 (583)
Q Consensus 172 ~~Eav~~ADIVILavpd~a~--~~Vl~eI~~~Lk~GaiL-~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf 248 (583)
. +.+++||+||+++|++.. .+++++|.++++++++| +.++|+.+..+.. .++..-+++++||+.|.+..
T Consensus 77 ~-~~~~~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~la~---~~~~~~r~ig~h~~~P~~~~---- 148 (282)
T PRK05808 77 L-DDLKDADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSITELAA---ATKRPDKVIGMHFFNPVPVM---- 148 (282)
T ss_pred H-HHhccCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHH---hhCCCcceEEeeccCCcccC----
Confidence 4 457999999999998766 67999999999999987 7889998887765 33344579999999999883
Q ss_pred hccccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 007951 249 VQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (583)
Q Consensus 249 ~~G~e~~G~Gv~aliAv~qd~sgeale~a~ala~aIG~~ 287 (583)
.++. ++++...+.+..+.+..++..+|..
T Consensus 149 --------~~ve--v~~g~~t~~e~~~~~~~l~~~lGk~ 177 (282)
T PRK05808 149 --------KLVE--IIRGLATSDATHEAVEALAKKIGKT 177 (282)
T ss_pred --------ccEE--EeCCCCCCHHHHHHHHHHHHHcCCe
Confidence 4564 6778899999999999999999975
No 39
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=99.40 E-value=1.1e-11 Score=136.68 Aligned_cols=217 Identities=14% Similarity=0.107 Sum_probs=143.0
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHH------------------HcC-ceecCCCcCC
Q 007951 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR------------------AAG-FTEENGTLGD 171 (583)
Q Consensus 111 ikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~------------------~~G-~~~~d~t~~d 171 (583)
|+||+|||+|+||.++|.+|..+ |++|++.++..++...... ..| +.. +.+
T Consensus 4 i~kIavIG~G~MG~~iA~~la~~------G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~----~~~ 73 (495)
T PRK07531 4 IMKAACIGGGVIGGGWAARFLLA------GIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTF----CAS 73 (495)
T ss_pred cCEEEEECcCHHHHHHHHHHHhC------CCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEe----eCC
Confidence 48999999999999999999998 9999888776443211100 012 332 467
Q ss_pred HhhhhccCCeEEEeccchHH--HHHHHHHHhcCCCCcEE-EEecCchhhhhhcccccCCCCccEEEeccCCCchhhHHhH
Q 007951 172 IYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLY 248 (583)
Q Consensus 172 ~~Eav~~ADIVILavpd~a~--~~Vl~eI~~~Lk~GaiL-~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf 248 (583)
+.+++++||+|+.++|++.. ..++.++.+.++++++| +-++|+.+..+.+ .+...-.++..||+.|.+..
T Consensus 74 ~~ea~~~aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~l~~---~~~~~~r~~~~hP~nP~~~~---- 146 (495)
T PRK07531 74 LAEAVAGADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDLQE---GMTHPERLFVAHPYNPVYLL---- 146 (495)
T ss_pred HHHHhcCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh---hcCCcceEEEEecCCCcccC----
Confidence 88899999999999998864 34778888888888765 4668877766654 33344578999999988651
Q ss_pred hccccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhHhhHHHH-HHHHHHHHHHHc
Q 007951 249 VQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG-IVESLFRRFTEN 327 (583)
Q Consensus 249 ~~G~e~~G~Gv~aliAv~qd~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvLsG~~pA-lieAl~d~~Ve~ 327 (583)
--..++.+...+.+.++.+..++..+|...+.- +...+ ..+++-+.+ ++.-++..+.+.
T Consensus 147 ----------~Lvevv~g~~t~~e~~~~~~~~~~~lG~~~v~~-----~k~~~-----gfi~nrl~~a~~~EA~~L~~~g 206 (495)
T PRK07531 147 ----------PLVELVGGGKTSPETIRRAKEILREIGMKPVHI-----AKEID-----AFVGDRLLEALWREALWLVKDG 206 (495)
T ss_pred ----------ceEEEcCCCCCCHHHHHHHHHHHHHcCCEEEee-----cCCCc-----chhHHHHHHHHHHHHHHHHHcC
Confidence 222466677788999999999999999652211 11111 123333333 334444555577
Q ss_pred CCCHHHHHHHHHHHH------HHH--HHHHH-HHhcHHHHHHhcCc
Q 007951 328 GMNEDLAYKNTVECI------TGI--ISKII-STQGMLAVYNSFSG 364 (583)
Q Consensus 328 Gl~~e~A~~~~~q~l------~Gl--ia~li-~e~G~~~m~d~vS~ 364 (583)
|+++++.....-+.. +|+ ..++. .+.|+..+.+++..
T Consensus 207 ~~s~~~id~~~~~g~g~~~~~~Gpf~~~dl~g~~~g~~~~~~~~~~ 252 (495)
T PRK07531 207 IATTEEIDDVIRYSFGLRWAQMGLFETYRIAGGEAGMRHFLAQFGP 252 (495)
T ss_pred CCCHHHHHHHHhhccCCCccccchHHHHHhcCcHHHHHHHHHHhch
Confidence 899998877654431 232 23443 25555555555544
No 40
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=99.39 E-value=9.6e-12 Score=128.73 Aligned_cols=152 Identities=22% Similarity=0.177 Sum_probs=110.5
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccchHH
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~a~ 191 (583)
+||+|||+|+||.+||.||.+. |+.+.+++|..++..+.+.+.|... ..++.|+++++|+||+++|+..+
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~a------G~~v~v~~r~~~ka~~~~~~~Ga~~----a~s~~eaa~~aDvVitmv~~~~~ 70 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKA------GHEVTVYNRTPEKAAELLAAAGATV----AASPAEAAAEADVVITMLPDDAA 70 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHC------CCEEEEEeCChhhhhHHHHHcCCcc----cCCHHHHHHhCCEEEEecCCHHH
Confidence 5899999999999999999999 9999999998877788888889886 67889999999999999998887
Q ss_pred H-HHHH---HHHhcCCCCcEEEEecCchhhhhhc-ccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEeec
Q 007951 192 A-DNYE---KIFSCMKPNSILGLSHGFLLGHLQS-MGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (583)
Q Consensus 192 ~-~Vl~---eI~~~Lk~GaiL~~a~G~~i~~ie~-~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv~ 266 (583)
. +|+. .+.+.++||+++++++-+....-.+ ....-..+..++ =+|-.-+.. ... .|.-.+. +.
T Consensus 71 V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~l-DAPVsGg~~---~A~-------~GtLtim-vG 138 (286)
T COG2084 71 VRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFL-DAPVSGGVP---GAA-------AGTLTIM-VG 138 (286)
T ss_pred HHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEE-ecCccCCch---hhh-------hCceEEE-eC
Confidence 6 5774 5999999999999998765221100 000112344444 244211111 011 3444433 34
Q ss_pred CCCCHHHHHHHHHHHHHhCCC
Q 007951 267 QDVDGRATNVALGWSVALGSP 287 (583)
Q Consensus 267 qd~sgeale~a~ala~aIG~~ 287 (583)
. +.++.+.++-+++.+|..
T Consensus 139 G--~~~~f~r~~pvl~~~g~~ 157 (286)
T COG2084 139 G--DAEAFERAKPVLEAMGKN 157 (286)
T ss_pred C--CHHHHHHHHHHHHHhcCc
Confidence 4 678999999999999974
No 41
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=99.38 E-value=8.1e-12 Score=128.24 Aligned_cols=153 Identities=16% Similarity=0.189 Sum_probs=112.7
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHH-----------HHHcCceec--------CCCcCC
Q 007951 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEE--------NGTLGD 171 (583)
Q Consensus 111 ikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~-----------A~~~G~~~~--------d~t~~d 171 (583)
++||+|||+|.||.++|.+|..+ |++|++.+++.++ .+. ..+.|.... .-+..+
T Consensus 4 ~~~V~vIG~G~mG~~iA~~l~~~------G~~V~~~d~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 76 (295)
T PLN02545 4 IKKVGVVGAGQMGSGIAQLAAAA------GMDVWLLDSDPAA-LSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTT 76 (295)
T ss_pred cCEEEEECCCHHHHHHHHHHHhc------CCeEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeC
Confidence 48999999999999999999998 9998877665332 221 222332100 001233
Q ss_pred HhhhhccCCeEEEecc--chHHHHHHHHHHhcCCCCcEE-EEecCchhhhhhcccccCCCCccEEEeccCCCchhhHHhH
Q 007951 172 IYETISGSDLVLLLIS--DAAQADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLY 248 (583)
Q Consensus 172 ~~Eav~~ADIVILavp--d~a~~~Vl~eI~~~Lk~GaiL-~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf 248 (583)
..+++++||+||.++| ++....++.++.+.++++++| +.++|+.+..+.+ ......+++++||..|....
T Consensus 77 ~~~~~~~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~l~~---~~~~~~r~~g~h~~~pp~~~---- 149 (295)
T PLN02545 77 NLEELRDADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITRLAS---ATQRPQQVIGMHFMNPPPIM---- 149 (295)
T ss_pred CHHHhCCCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHh---hcCCCcceEEEeccCCcccC----
Confidence 4467899999999999 555567888999999999987 4889998877755 33344689999998887661
Q ss_pred hccccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 007951 249 VQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (583)
Q Consensus 249 ~~G~e~~G~Gv~aliAv~qd~sgeale~a~ala~aIG~~ 287 (583)
. . ..++++...+.+.++.++.++..+|..
T Consensus 150 --------~-l-veiv~g~~t~~e~~~~~~~ll~~lG~~ 178 (295)
T PLN02545 150 --------K-L-VEIIRGADTSDEVFDATKALAERFGKT 178 (295)
T ss_pred --------c-e-EEEeCCCCCCHHHHHHHHHHHHHcCCe
Confidence 1 2 346667888999999999999999975
No 42
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=99.38 E-value=1.7e-12 Score=111.25 Aligned_cols=90 Identities=23% Similarity=0.317 Sum_probs=73.1
Q ss_pred EEEEEccchhHHHHHHHHHHhhhhhcCC---ceEEEE-ecCCcccHHHHHHcCceecCCCcC-CHhhhhccCCeEEEecc
Q 007951 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSD---IVVKVG-LRKGSRSFAEARAAGFTEENGTLG-DIYETISGSDLVLLLIS 187 (583)
Q Consensus 113 kIgIIG~G~mG~A~A~nLrdsl~~~g~G---~~ViVg-~r~~s~s~~~A~~~G~~~~d~t~~-d~~Eav~~ADIVILavp 187 (583)
||||||+|+||.+++++|.++ | .+|.+. .|+.++..+.+.+.+... .. +..|+++++|+||+++|
T Consensus 1 kI~iIG~G~mg~al~~~l~~~------g~~~~~v~~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~~advvilav~ 70 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLAS------GIKPHEVIIVSSRSPEKAAELAKEYGVQA----TADDNEEAAQEADVVILAVK 70 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHT------TS-GGEEEEEEESSHHHHHHHHHHCTTEE----ESEEHHHHHHHTSEEEE-S-
T ss_pred CEEEECCCHHHHHHHHHHHHC------CCCceeEEeeccCcHHHHHHHHHhhcccc----ccCChHHhhccCCEEEEEEC
Confidence 799999999999999999998 8 688866 666666667778888654 34 78999999999999999
Q ss_pred chHHHHHHHHHHhcCCCCcEEE-EecC
Q 007951 188 DAAQADNYEKIFSCMKPNSILG-LSHG 213 (583)
Q Consensus 188 d~a~~~Vl~eI~~~Lk~GaiL~-~a~G 213 (583)
|+...++++++ +.+.++++|+ .++|
T Consensus 71 p~~~~~v~~~i-~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 71 PQQLPEVLSEI-PHLLKGKLVISIAAG 96 (96)
T ss_dssp GGGHHHHHHHH-HHHHTTSEEEEESTT
T ss_pred HHHHHHHHHHH-hhccCCCEEEEeCCC
Confidence 99999999999 7777888754 5554
No 43
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=99.34 E-value=2.4e-12 Score=135.08 Aligned_cols=113 Identities=16% Similarity=0.096 Sum_probs=95.8
Q ss_pred hHHHHHHHHHHHHHHHHhCCChhhhhhhhHHHHhhhcchhhhhccchhhhhhcchhhhccc-cccccchhHHH---HHHH
Q 007951 451 AGVYAALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGS-RKWAPRFDYIL---TQQA 526 (583)
Q Consensus 451 ~g~~~~~~~a~~~~l~~~gh~~se~~ne~~~e~~~sl~p~~~~~g~~~m~~~cs~ta~~g~-~~w~~~f~~~~---~~~~ 526 (583)
.|-+.+++.|++|+|.+.|++|..|++|++.|. ..+.+||.++|++||+.+||+||+||. ..|.+.+++.. ++++
T Consensus 198 ~Gg~~~li~~gfe~lveaGy~pe~Ayfe~~he~-kli~dli~e~G~~~m~~~~S~taeyG~~~~g~~ii~~~~k~~m~~~ 276 (335)
T PRK13403 198 CGGVTALVKAGFETLTEGGYRPEIAYFECLHEL-KLIVDLMYEGGLTNMRHSISDTAEFGDYVTGSRIVTDETKKEMKRV 276 (335)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH-HHHHHHHHHccHHHHHHhhCcHHhcCCccCCCcccCHHHHHHHHHH
Confidence 444555788999999999999999999999999 999999999999999999999999999 56777777766 7788
Q ss_pred HhhhccCCc-------------cchhhHHhhhcChHHHHHHHHhccCCcce
Q 007951 527 LVAVDNDAP-------------INGDLISNFLSDPVHGAIEVCAQLRPTVD 564 (583)
Q Consensus 527 ~~~~~~g~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (583)
+..|++|+- ....+..+.++||++..=+.-.+|+|-++
T Consensus 277 l~~iq~g~fa~~~~~e~~~g~~~~~~~~~~~~~h~ie~vg~~lR~~~~~~~ 327 (335)
T PRK13403 277 LTEIQQGEFAKKWILENQAGRPTYNAMKKAEQNHQLEKVGEELREMMSWIH 327 (335)
T ss_pred HHHhcCCHHHHHHHHHhhCCCHHHHHHHHHHhcCcHHHHHHHHHHhCCccc
Confidence 888888843 44567778899999988877777777543
No 44
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=99.34 E-value=1.7e-11 Score=121.24 Aligned_cols=156 Identities=17% Similarity=0.150 Sum_probs=109.6
Q ss_pred CEEEEEc-cchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHH-------cCceecCCCcCCHhhhhccCCeEE
Q 007951 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-------AGFTEENGTLGDIYETISGSDLVL 183 (583)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~-------~G~~~~d~t~~d~~Eav~~ADIVI 183 (583)
|||+||| .|+||.+++..|.++ |++|+++.|..++..+.+.. .|+.. .-...+..++++++|+||
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~------G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~-~~~~~~~~ea~~~aDvVi 73 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKA------GNKIIIGSRDLEKAEEAAAKALEELGHGGSDI-KVTGADNAEAAKRADVVI 73 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhC------CCEEEEEEcCHHHHHHHHHHHHhhccccCCCc-eEEEeChHHHHhcCCEEE
Confidence 6899997 899999999999998 88888887765443333221 13210 001246678899999999
Q ss_pred EeccchHHHHHHHHHHhcCCCCcEE-EEecCchh-----------------hhhhcccccCCCCccEEEeccCCCchhhH
Q 007951 184 LLISDAAQADNYEKIFSCMKPNSIL-GLSHGFLL-----------------GHLQSMGLDFPKNIGVIAVCPKGMGPSVR 245 (583)
Q Consensus 184 Lavpd~a~~~Vl~eI~~~Lk~GaiL-~~a~G~~i-----------------~~ie~~~i~~p~dv~VI~v~PngPg~~vR 245 (583)
+++|++.+.++++++.+.++. ++| ..+.|+.+ ..++. .+|.+.+||+.+||.+.....
T Consensus 74 lavp~~~~~~~l~~l~~~l~~-~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~---~~p~~~~VVka~~~~~a~~~~ 149 (219)
T TIGR01915 74 LAVPWDHVLKTLESLRDELSG-KLVISPVVPLASDGGKGARYLPPEEGSAAEQAAA---LLPETSRVVAAFHNLSAVLLQ 149 (219)
T ss_pred EECCHHHHHHHHHHHHHhccC-CEEEEeccCceecCCCCceecCCCCCcHHHHHHH---hCCCCCeEeeccccCCHHHhc
Confidence 999999999999998887764 655 46677764 22333 455557899999999988754
Q ss_pred HhHhccccccCCCceEEEeecCCCCHHHHHHHHHHHHHh-CCC
Q 007951 246 RLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVAL-GSP 287 (583)
Q Consensus 246 ~lf~~G~e~~G~Gv~aliAv~qd~sgeale~a~ala~aI-G~~ 287 (583)
. .. .+.+...+++ . | ++++++.+.+|...+ |+.
T Consensus 150 ~-~~-----~~~~~~~~v~-G-d-d~~ak~~v~~L~~~~~G~~ 183 (219)
T TIGR01915 150 D-VD-----DEVDCDVLVC-G-D-DEEAKEVVAELAGRIDGLR 183 (219)
T ss_pred C-CC-----CCCCCCEEEE-C-C-CHHHHHHHHHHHHhcCCCC
Confidence 3 11 1234555444 3 3 455999999999999 974
No 45
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=99.33 E-value=6e-11 Score=122.69 Aligned_cols=194 Identities=13% Similarity=0.056 Sum_probs=124.9
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccchHH
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~a~ 191 (583)
|||+|||+|+||.+++++|.++ |++|.++++.. + .+...+.|... +.+..|++++||+||+++|+..+
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~------G~~v~v~~~~~-~-~~~~~~~g~~~----~~s~~~~~~~advVi~~v~~~~~ 68 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARA------GHQLHVTTIGP-V-ADELLSLGAVS----VETARQVTEASDIIFIMVPDTPQ 68 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHC------CCeEEEEeCCH-h-HHHHHHcCCee----cCCHHHHHhcCCEEEEeCCChHH
Confidence 4799999999999999999998 99888777653 2 34555677764 56888999999999999998854
Q ss_pred -HHHHH---HHHhcCCCCcEEEEecCchhhh---hhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEe
Q 007951 192 -ADNYE---KIFSCMKPNSILGLSHGFLLGH---LQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (583)
Q Consensus 192 -~~Vl~---eI~~~Lk~GaiL~~a~G~~i~~---ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliA 264 (583)
.+++. .+.+.+++|++|++++...... +.+ ..-..++.++- +|-.-+.. ..+. |...+++
T Consensus 69 v~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~--~~~~~G~~~vd-aPVsGg~~---~a~~-------g~l~~~~ 135 (292)
T PRK15059 69 VEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFAR--QVNELGGDYLD-APVSGGEI---GARE-------GTLSIMV 135 (292)
T ss_pred HHHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHH--HHHHcCCCEEE-ecCCCCHH---HHhc-------CcEEEEE
Confidence 56663 3677789999999998776431 211 11134777776 68443332 2222 3433333
Q ss_pred ecCCCCHHHHHHHHHHHHHhCCCcccccc-hhhhhhhhhhhhhhhHhhHHHHHHHHHHHHHHHcCCCHHHHHH
Q 007951 265 VHQDVDGRATNVALGWSVALGSPFTFATT-LEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYK 336 (583)
Q Consensus 265 v~qd~sgeale~a~ala~aIG~~~vieTt-f~eE~~sDlfgeqtvLsG~~pAlieAl~d~~Ve~Gl~~e~A~~ 336 (583)
.. +.+.++.++.++..+|.. ++... .-.=...++.. ...+...+.++.|++ ..+.+.|++++..+.
T Consensus 136 -gG--~~~~~~~~~p~l~~~g~~-~~~~G~~G~g~~~Kl~~-N~l~~~~~~a~~Ea~-~la~~~Gld~~~~~~ 202 (292)
T PRK15059 136 -GG--DEAVFERVKPLFELLGKN-ITLVGGNGDGQTCKVAN-QIIVALNIEAVSEAL-LFASKAGADPVRVRQ 202 (292)
T ss_pred -cC--CHHHHHHHHHHHHHHcCC-cEEeCCccHHHHHHHHH-HHHHHHHHHHHHHHH-HHHHHcCCCHHHHHH
Confidence 33 577899999999999964 22111 11111112211 222222344455553 245789999998774
No 46
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=99.33 E-value=4.5e-11 Score=122.93 Aligned_cols=149 Identities=19% Similarity=0.224 Sum_probs=101.4
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcC--------------ceecCCCcCCHhhhh
Q 007951 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG--------------FTEENGTLGDIYETI 176 (583)
Q Consensus 111 ikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G--------------~~~~d~t~~d~~Eav 176 (583)
++||+|||+|+||.++|.+|.++ |++|.+..+.. +..+...+.| +.. ..+..+++
T Consensus 1 mmkI~iiG~G~mG~~~a~~L~~~------g~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 69 (325)
T PRK00094 1 MMKIAVLGAGSWGTALAIVLARN------GHDVTLWARDP-EQAAEINADRENPRYLPGIKLPDNLRA----TTDLAEAL 69 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC------CCEEEEEECCH-HHHHHHHHcCcccccCCCCcCCCCeEE----eCCHHHHH
Confidence 37899999999999999999998 99887776653 3344444432 221 35677888
Q ss_pred ccCCeEEEeccchHHHHHHHHHHhcCCCCcEEEEe-cCchhh-------hhhcccccCCC-CccEEEeccCCCchhhHHh
Q 007951 177 SGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLS-HGFLLG-------HLQSMGLDFPK-NIGVIAVCPKGMGPSVRRL 247 (583)
Q Consensus 177 ~~ADIVILavpd~a~~~Vl~eI~~~Lk~GaiL~~a-~G~~i~-------~ie~~~i~~p~-dv~VI~v~PngPg~~vR~l 247 (583)
+++|+||+++|+....++++++.+.++++++|+.. .|+... .+++ ..+. ....++..|+.+...
T Consensus 70 ~~~D~vi~~v~~~~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~---~~~~~~~~~~~~~P~~~~~~---- 142 (325)
T PRK00094 70 ADADLILVAVPSQALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEE---ELPDLAPIAVLSGPSFAKEV---- 142 (325)
T ss_pred hCCCEEEEeCCHHHHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHH---HcCCCCceEEEECccHHHHH----
Confidence 99999999999998889999999999999876654 487531 2222 2222 133556667554433
Q ss_pred HhccccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCC
Q 007951 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS 286 (583)
Q Consensus 248 f~~G~e~~G~Gv~aliAv~qd~sgeale~a~ala~aIG~ 286 (583)
+.|.+.++... ..+.+..+.+..++...|.
T Consensus 143 --------~~g~~~~~~~~-~~~~~~~~~~~~~l~~~~~ 172 (325)
T PRK00094 143 --------ARGLPTAVVIA-STDEELAERVQELFHSPYF 172 (325)
T ss_pred --------HcCCCcEEEEE-eCCHHHHHHHHHHhCCCCE
Confidence 12333322222 2256778888899988885
No 47
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.32 E-value=7.4e-12 Score=118.39 Aligned_cols=149 Identities=22% Similarity=0.217 Sum_probs=100.7
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccchH
Q 007951 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (583)
Q Consensus 111 ikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~a 190 (583)
++||||||+|+||.++|++|.++ |++|.++++.. ...+...+.|... +.++.|+++++|+|++++|+..
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~------g~~v~~~d~~~-~~~~~~~~~g~~~----~~s~~e~~~~~dvvi~~v~~~~ 69 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKA------GYEVTVYDRSP-EKAEALAEAGAEV----ADSPAEAAEQADVVILCVPDDD 69 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHT------TTEEEEEESSH-HHHHHHHHTTEEE----ESSHHHHHHHBSEEEE-SSSHH
T ss_pred CCEEEEEchHHHHHHHHHHHHhc------CCeEEeeccch-hhhhhhHHhhhhh----hhhhhhHhhcccceEeecccch
Confidence 48999999999999999999999 99998877654 4456666778876 7899999999999999999855
Q ss_pred H-HHHHHH--HHhcCCCCcEEEEecCchhh---hhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEe
Q 007951 191 Q-ADNYEK--IFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (583)
Q Consensus 191 ~-~~Vl~e--I~~~Lk~GaiL~~a~G~~i~---~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliA 264 (583)
+ .+++.+ +.+.+++|+++++.+-.... .+.+ ..-..++.+|- +|-.-++. .-. .|.-.++.
T Consensus 70 ~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~--~~~~~g~~~vd-apV~Gg~~---~a~-------~g~l~~~~ 136 (163)
T PF03446_consen 70 AVEAVLFGENILAGLRPGKIIIDMSTISPETSRELAE--RLAAKGVRYVD-APVSGGPP---GAE-------EGTLTIMV 136 (163)
T ss_dssp HHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHH--HHHHTTEEEEE-EEEESHHH---HHH-------HTTEEEEE
T ss_pred hhhhhhhhhHHhhccccceEEEecCCcchhhhhhhhh--hhhhccceeee-eeeecccc---ccc-------ccceEEEc
Confidence 5 678888 99999999999988776532 2222 11134666663 34111111 111 24433233
Q ss_pred ecCCCCHHHHHHHHHHHHHhCC
Q 007951 265 VHQDVDGRATNVALGWSVALGS 286 (583)
Q Consensus 265 v~qd~sgeale~a~ala~aIG~ 286 (583)
.. +.++.+.++.+++.+|.
T Consensus 137 -gG--~~~~~~~~~~~l~~~~~ 155 (163)
T PF03446_consen 137 -GG--DEEAFERVRPLLEAMGK 155 (163)
T ss_dssp -ES---HHHHHHHHHHHHHHEE
T ss_pred -cC--CHHHHHHHHHHHHHHhC
Confidence 33 46789999999999995
No 48
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=99.30 E-value=4.9e-12 Score=133.30 Aligned_cols=111 Identities=19% Similarity=0.179 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHHHHHhCCChhhhhhhhHHHHhhhcchhhhhccchhhhhhcchhhhccccccccc-hhHHH---HHHHH
Q 007951 452 GVYAALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPR-FDYIL---TQQAL 527 (583)
Q Consensus 452 g~~~~~~~a~~~~l~~~gh~~se~~ne~~~e~~~sl~p~~~~~g~~~m~~~cs~ta~~g~~~w~~~-f~~~~---~~~~~ 527 (583)
|-+++++.+++|+|.+.|++|.++++|++.|. +.+.+||.++||+||+.+||+||+||.+.|.|| +++.. +++++
T Consensus 201 gg~~~l~~~~~e~l~eaG~~pe~Ay~e~~~e~-k~i~dl~~~~g~~~m~~~~s~ta~~g~~~~~~~~~~~~~~~~m~~~~ 279 (330)
T PRK05479 201 GGLTELIKAGFETLVEAGYQPEMAYFECLHEL-KLIVDLIYEGGIANMRYSISNTAEYGDYVSGPRVITEETKKEMKEVL 279 (330)
T ss_pred hHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH-HHHHHHHHHccHHHHHHhcCcHhhcCccccCCcccCHHHHHHHHHHH
Confidence 33445778999999999999999999999997 799999999999999999999999999877765 44444 67888
Q ss_pred hhhccCC-------------ccchhhHHhhhcChHHHHHHHHhccCCcc
Q 007951 528 VAVDNDA-------------PINGDLISNFLSDPVHGAIEVCAQLRPTV 563 (583)
Q Consensus 528 ~~~~~g~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (583)
..|++|+ +....+....++||++..=+.-..|+|-.
T Consensus 280 ~~i~~g~fa~~~~~~~~~~~~~~~~~~~~~~~~~~e~~g~~lr~~~~~~ 328 (330)
T PRK05479 280 KDIQSGEFAKEWILENKAGRPTFKALRREEAEHPIEKVGAKLRAMMPWI 328 (330)
T ss_pred HHcCCCHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHhcccc
Confidence 8888883 35556677888999998877777776653
No 49
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.30 E-value=2.9e-10 Score=116.65 Aligned_cols=213 Identities=17% Similarity=0.199 Sum_probs=135.6
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHc-------------------------Cceec
Q 007951 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-------------------------GFTEE 165 (583)
Q Consensus 111 ikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~-------------------------G~~~~ 165 (583)
++||+|||.|.||.++|..|..+ |++|++.++..+ ..+.+.+. .+..
T Consensus 3 ~~kIaViGaG~mG~~iA~~la~~------G~~V~l~d~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~- 74 (287)
T PRK08293 3 IKNVTVAGAGVLGSQIAFQTAFH------GFDVTIYDISDE-ALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL- 74 (287)
T ss_pred ccEEEEECCCHHHHHHHHHHHhc------CCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE-
Confidence 58999999999999999999988 999877766533 23333211 1221
Q ss_pred CCCcCCHhhhhccCCeEEEeccch--HHHHHHHHHHhcCCCCcEEE-EecCchhhhhhcccccCCCCccEEEeccCCCch
Q 007951 166 NGTLGDIYETISGSDLVLLLISDA--AQADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGP 242 (583)
Q Consensus 166 d~t~~d~~Eav~~ADIVILavpd~--a~~~Vl~eI~~~Lk~GaiL~-~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~ 242 (583)
..+.++++++||+||.++|.+ ...++++++.+.++++++|+ ..+++.+..+.+ ..+..-+++..||-.|..
T Consensus 75 ---~~d~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~~~~~---~~~~~~r~vg~Hf~~p~~ 148 (287)
T PRK08293 75 ---TTDLAEAVKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPSQFAE---ATGRPEKFLALHFANEIW 148 (287)
T ss_pred ---eCCHHHHhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHHHHHh---hcCCcccEEEEcCCCCCC
Confidence 457788899999999999966 45678899999999999874 555555544443 223334799999977755
Q ss_pred hhHHhHhccccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhHhh-HHHHHHHHHH
Q 007951 243 SVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLG-AVHGIVESLF 321 (583)
Q Consensus 243 ~vR~lf~~G~e~~G~Gv~aliAv~qd~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvLsG-~~pAlieAl~ 321 (583)
. .....+.++...+.+.++.+.+++..+|...++- ..+ .. +-+.+ .+.+++..++
T Consensus 149 ~--------------~~lvevv~~~~t~~~~~~~~~~~~~~~Gk~pv~v---~~d-~p------gfi~nRi~~~~~~ea~ 204 (287)
T PRK08293 149 K--------------NNTAEIMGHPGTDPEVFDTVVAFAKAIGMVPIVL---KKE-QP------GYILNSLLVPFLSAAL 204 (287)
T ss_pred c--------------CCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEe---cCC-CC------CHhHHHHHHHHHHHHH
Confidence 4 2334466788889999999999999999642211 011 11 11222 2223333333
Q ss_pred HHHHHcCC-CHHHHHHH---HHHHHHHHHHHHHHHhcHHHHHHhcC
Q 007951 322 RRFTENGM-NEDLAYKN---TVECITGIISKIISTQGMLAVYNSFS 363 (583)
Q Consensus 322 d~~Ve~Gl-~~e~A~~~---~~q~l~Glia~li~e~G~~~m~d~vS 363 (583)
.+++.|+ ++++--.. ....-+| .-+++-..|++.+++...
T Consensus 205 -~l~~~g~a~~~~iD~a~~~~~g~~~G-p~~~~D~~Gld~~~~~~~ 248 (287)
T PRK08293 205 -ALWAKGVADPETIDKTWMIATGAPMG-PFGILDIVGLDTAYNITS 248 (287)
T ss_pred -HHHHcCCCCHHHHHHHHHhccCCCcC-HHHHHHHhchHHHHHHHH
Confidence 3467775 46544332 2222234 345666677765555443
No 50
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.29 E-value=1.3e-10 Score=120.12 Aligned_cols=198 Identities=15% Similarity=0.115 Sum_probs=123.8
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhcc---CCeEEEeccc
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG---SDLVLLLISD 188 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~---ADIVILavpd 188 (583)
++|||||+|+||.++|++|.+. |++|+++++..+ ..+.+.+.|... ..+.++++++ +|+||+++|+
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~------g~~v~v~dr~~~-~~~~~~~~g~~~----~~s~~~~~~~~~~advVi~~vp~ 69 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLRED------GHEVVGYDVNQE-AVDVAGKLGITA----RHSLEELVSKLEAPRTIWVMVPA 69 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhC------CCEEEEEECCHH-HHHHHHHCCCee----cCCHHHHHHhCCCCCEEEEEecC
Confidence 5899999999999999999998 999887776543 445556678764 5678888776 6999999999
Q ss_pred h-HHHHHHHHHHhcCCCCcEEEEecCchh---hhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEe
Q 007951 189 A-AQADNYEKIFSCMKPNSILGLSHGFLL---GHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (583)
Q Consensus 189 ~-a~~~Vl~eI~~~Lk~GaiL~~a~G~~i---~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliA 264 (583)
. ...++++++.+.+++|++|++.+.... ..+.+ . .-..++.++ =+|-.-+.. . . -.|. . +.
T Consensus 70 ~~~~~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~-~-~~~~g~~~v-dapV~G~~~---~--a-----~~g~-~-~~ 134 (299)
T PRK12490 70 GEVTESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAE-E-LAERGIHYV-DCGTSGGVW---G--L-----RNGY-C-LM 134 (299)
T ss_pred chHHHHHHHHHhccCCCCCEEEECCCCCchhHHHHHH-H-HHHcCCeEE-eCCCCCCHH---H--H-----hcCC-e-EE
Confidence 8 667889999999999999998866542 22211 1 112456664 455222211 0 0 1355 3 33
Q ss_pred ecCCCCHHHHHHHHHHHHHhCCC--cccccc-hhhhhhhhhhhhhhhHhhHHHHHHHHHHHHHHHcC--CCHHHHHHHHH
Q 007951 265 VHQDVDGRATNVALGWSVALGSP--FTFATT-LEQEYRSDIFGERGILLGAVHGIVESLFRRFTENG--MNEDLAYKNTV 339 (583)
Q Consensus 265 v~qd~sgeale~a~ala~aIG~~--~vieTt-f~eE~~sDlfgeqtvLsG~~pAlieAl~d~~Ve~G--l~~e~A~~~~~ 339 (583)
+.. +.++.+.++.+++.+|.. .++..- .-.=...++. -+.++.+.+.++.|++ ..+.+.| ++++..+..--
T Consensus 135 ~gG--~~~~~~~~~~~l~~~~~~~~~~~~~G~~g~a~~~Kl~-~n~~~~~~~~~~aEa~-~l~~~~g~~ld~~~~~~~~~ 210 (299)
T PRK12490 135 VGG--DKEIYDRLEPVFKALAPEGPGYVHAGPVGSGHFLKMV-HNGIEYGMMQAYAEGL-ELLDKSDFDFDVEDVARLWR 210 (299)
T ss_pred ecC--CHHHHHHHHHHHHHhcCcCCcEEEECCcCHHHHHHHH-HHHHHHHHHHHHHHHH-HHHHHcccCCCHHHHHHHHc
Confidence 454 567889999999999961 111110 0011111111 1222233333344443 3456778 88887766533
No 51
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=99.28 E-value=3.7e-10 Score=116.75 Aligned_cols=147 Identities=15% Similarity=0.103 Sum_probs=103.6
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhh---hccCCeEEEeccc
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET---ISGSDLVLLLISD 188 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Ea---v~~ADIVILavpd 188 (583)
|+|||||+|+||.++|++|.+. |++|.+++++.+ ..+...+.|... ..+..++ ++++|+|++++|+
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~------g~~V~~~dr~~~-~~~~l~~~g~~~----~~s~~~~~~~~~~~dvIi~~vp~ 69 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKR------GHDCVGYDHDQD-AVKAMKEDRTTG----VANLRELSQRLSAPRVVWVMVPH 69 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHC------CCEEEEEECCHH-HHHHHHHcCCcc----cCCHHHHHhhcCCCCEEEEEcCc
Confidence 5899999999999999999998 999887766544 455666667653 3455554 4578999999999
Q ss_pred hHHHHHHHHHHhcCCCCcEEEEecCch---hhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEee
Q 007951 189 AAQADNYEKIFSCMKPNSILGLSHGFL---LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (583)
Q Consensus 189 ~a~~~Vl~eI~~~Lk~GaiL~~a~G~~---i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv 265 (583)
....++++++.+.+++|++|++.+... .....+ . .-..+++++-....+....- -.|. + +.+
T Consensus 70 ~~~~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~-~-~~~~g~~~vda~vsGg~~~a-----------~~G~-~-~~~ 134 (298)
T TIGR00872 70 GIVDAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYK-L-LKEKGIHLLDCGTSGGVWGR-----------ERGY-C-FMI 134 (298)
T ss_pred hHHHHHHHHHHhhCCCCCEEEECCCCCcccHHHHHH-H-HHhcCCeEEecCCCCCHHHH-----------hcCC-e-eee
Confidence 988899999999999999998876542 111111 1 22356777764443321111 1353 3 334
Q ss_pred cCCCCHHHHHHHHHHHHHhCC
Q 007951 266 HQDVDGRATNVALGWSVALGS 286 (583)
Q Consensus 266 ~qd~sgeale~a~ala~aIG~ 286 (583)
.. +.++.+.++.+++.+|.
T Consensus 135 gG--~~~~~~~~~~~l~~~~~ 153 (298)
T TIGR00872 135 GG--DGEAFARAEPLFADVAP 153 (298)
T ss_pred CC--CHHHHHHHHHHHHHhcC
Confidence 44 57889999999999996
No 52
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=99.25 E-value=2.1e-10 Score=118.44 Aligned_cols=196 Identities=14% Similarity=0.115 Sum_probs=122.8
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccchH-
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA- 190 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~a- 190 (583)
+||+|||+|+||.++|.+|.+. |++|.+++++.+ ..+...+.|... ..+..++++++|+||+++|+..
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~------G~~V~v~d~~~~-~~~~~~~~g~~~----~~s~~~~~~~aDvVi~~vp~~~~ 70 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQ------GHQLQVFDVNPQ-AVDALVDKGATP----AASPAQAAAGAEFVITMLPNGDL 70 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHC------CCeEEEEcCCHH-HHHHHHHcCCcc----cCCHHHHHhcCCEEEEecCCHHH
Confidence 6899999999999999999998 998887776544 455556667654 5688899999999999999986
Q ss_pred HHHHHH---HHHhcCCCCcEEEEecCchhh---hhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEe
Q 007951 191 QADNYE---KIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (583)
Q Consensus 191 ~~~Vl~---eI~~~Lk~GaiL~~a~G~~i~---~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliA 264 (583)
...++. .+.+.+++|+++++.+-+... .+.. .....++.++ =+|-.-+... -. .|...++.
T Consensus 71 ~~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~--~l~~~g~~~l-dapV~g~~~~---a~-------~g~l~~~~ 137 (296)
T PRK15461 71 VRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIA--DMQAKGFSMM-DVPVGRTSDN---AI-------TGTLLLLA 137 (296)
T ss_pred HHHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHH--HHHHcCCcEE-EccCCCCHHH---HH-------hCcEEEEE
Confidence 455664 477888999998877665432 2211 0112456665 3563322220 11 34444333
Q ss_pred ecCCCCHHHHHHHHHHHHHhCCCccccc-chhhhhhhhhhhhhhhHhhHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 007951 265 VHQDVDGRATNVALGWSVALGSPFTFAT-TLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKN 337 (583)
Q Consensus 265 v~qd~sgeale~a~ala~aIG~~~vieT-tf~eE~~sDlfgeqtvLsG~~pAlieAl~d~~Ve~Gl~~e~A~~~ 337 (583)
.. +.+..+.++.+++.+|.. ++.. ..-.=...++. .-.++++..+++--.+..+.+.|++++..+..
T Consensus 138 -gg--~~~~~~~~~p~l~~~g~~-~~~~g~~G~g~~~Kl~--~N~~~~~~~~~~~Ea~~l~~~~Gld~~~~~~~ 205 (296)
T PRK15461 138 -GG--TAEQVERATPILMAMGNE-LINAGGPGMGIRVKLI--NNYMSIALNALSAEAAVLCEALGLSFDVALKV 205 (296)
T ss_pred -CC--CHHHHHHHHHHHHHHcCC-eEeeCCCCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 33 567899999999999964 2221 11011111221 11133333333333344567899998876544
No 53
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.24 E-value=1.8e-10 Score=118.18 Aligned_cols=152 Identities=17% Similarity=0.239 Sum_probs=111.8
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHH--------------cCceecC---------C
Q 007951 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA--------------AGFTEEN---------G 167 (583)
Q Consensus 111 ikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~--------------~G~~~~d---------~ 167 (583)
|++|+|||+|.||.++|..|.++ |++|++.+++. ...+.+.+ .|..... .
T Consensus 3 i~~I~ViGaG~mG~~iA~~la~~------G~~V~l~d~~~-~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~ 75 (291)
T PRK06035 3 IKVIGVVGSGVMGQGIAQVFART------GYDVTIVDVSE-EILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIR 75 (291)
T ss_pred CcEEEEECccHHHHHHHHHHHhc------CCeEEEEeCCH-HHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcE
Confidence 58999999999999999999998 99887766553 33332211 1211000 0
Q ss_pred CcCCHhhhhccCCeEEEeccchH--HHHHHHHHHhcCCCCcEE-EEecCchhhhhhcccccCCCCccEEEeccCCCchhh
Q 007951 168 TLGDIYETISGSDLVLLLISDAA--QADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSV 244 (583)
Q Consensus 168 t~~d~~Eav~~ADIVILavpd~a--~~~Vl~eI~~~Lk~GaiL-~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~v 244 (583)
...+. +++++||+||+++|++. ..++++++.+.++++++| +-++|+.+..+.. .++..-+++++||..|.+..
T Consensus 76 ~~~~~-~~~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~~~~~la~---~~~~~~r~ig~hf~~P~~~~ 151 (291)
T PRK06035 76 TSTSY-ESLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGIMIAEIAT---ALERKDRFIGMHWFNPAPVM 151 (291)
T ss_pred eeCCH-HHhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCCCHHHHHh---hcCCcccEEEEecCCCcccC
Confidence 12334 67899999999999886 357888999999999875 4678887776655 33444579999999998883
Q ss_pred HHhHhccccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 007951 245 RRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (583)
Q Consensus 245 R~lf~~G~e~~G~Gv~aliAv~qd~sgeale~a~ala~aIG~~ 287 (583)
.++. +..++.++.+..+.+..++..+|..
T Consensus 152 ------------~~vE--v~~g~~T~~e~~~~~~~~~~~lgk~ 180 (291)
T PRK06035 152 ------------KLIE--VVRAALTSEETFNTTVELSKKIGKI 180 (291)
T ss_pred ------------ccEE--EeCCCCCCHHHHHHHHHHHHHcCCe
Confidence 2443 2468888999999999999999974
No 54
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=99.23 E-value=4.1e-10 Score=115.37 Aligned_cols=191 Identities=17% Similarity=0.150 Sum_probs=121.1
Q ss_pred EEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccchHHH
Q 007951 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQA 192 (583)
Q Consensus 113 kIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~a~~ 192 (583)
||||||+|+||.++|.+|.+. |++|++++++. ...+.+.+.|... ..+..+++++||+||+++|+..+.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~------G~~V~~~dr~~-~~~~~~~~~g~~~----~~~~~~~~~~aDivi~~vp~~~~~ 69 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKA------GYQLHVTTIGP-EVADELLAAGAVT----AETARQVTEQADVIFTMVPDSPQV 69 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHC------CCeEEEEcCCH-HHHHHHHHCCCcc----cCCHHHHHhcCCEEEEecCCHHHH
Confidence 599999999999999999998 99988776654 4466666777754 567889999999999999987554
Q ss_pred -HHH---HHHHhcCCCCcEEEEecCchhh---hhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEee
Q 007951 193 -DNY---EKIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (583)
Q Consensus 193 -~Vl---~eI~~~Lk~GaiL~~a~G~~i~---~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv 265 (583)
.++ +.+.+.+++|++|++.+.+... .+.+ ....+++.++- +|- .+... ... .|...++.
T Consensus 70 ~~v~~~~~~~~~~~~~g~iivd~st~~~~~~~~l~~--~l~~~g~~~~~-~pv-~g~~~--~a~-------~g~l~i~~- 135 (291)
T TIGR01505 70 EEVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAK--AVKEKGIDYLD-APV-SGGEI--GAI-------EGTLSIMV- 135 (291)
T ss_pred HHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHH--HHHHcCCCEEe-cCC-CCCHH--HHh-------cCCEEEEe-
Confidence 454 3477888999999887766532 2222 01124677775 572 22211 111 24444333
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhh-hHhhHHHH-HHHHHH---HHHHHcCCCHHHHHHH
Q 007951 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERG-ILLGAVHG-IVESLF---RRFTENGMNEDLAYKN 337 (583)
Q Consensus 266 ~qd~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqt-vLsG~~pA-lieAl~---d~~Ve~Gl~~e~A~~~ 337 (583)
.. +++..+.++.++..+|.. ++..-... . ++.. .+.+.+-+ .++++. ..+.+.|+++++.+..
T Consensus 136 gg--~~~~~~~~~~ll~~lg~~-~~~~g~~g---~---a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gid~~~~~~~ 203 (291)
T TIGR01505 136 GG--DQAVFDRVKPLFEALGKN-IVLVGGNG---D---GQTCKVANQIIVALNIEAVSEALVFASKAGVDPVRVRQA 203 (291)
T ss_pred cC--CHHHHHHHHHHHHHhcCC-eEEeCCCC---H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 33 468899999999999964 22211111 0 1111 12222222 333333 4456889999877654
No 55
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.22 E-value=2.8e-10 Score=116.66 Aligned_cols=149 Identities=15% Similarity=0.090 Sum_probs=109.6
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHH-----------cC-------------ceecC
Q 007951 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----------AG-------------FTEEN 166 (583)
Q Consensus 111 ikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~-----------~G-------------~~~~d 166 (583)
|++|+|||.|.||.++|..|.++ |++|++.++..+ ..+.+.+ .| +..
T Consensus 1 ~~~V~VIG~G~mG~~iA~~la~~------G~~V~~~d~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-- 71 (288)
T PRK09260 1 IEKLVVVGAGVMGRGIAYVFAVS------GFQTTLVDIKQE-QLESAQQEIASIFEQGVARGKLTEAARQAALARLSY-- 71 (288)
T ss_pred CcEEEEECccHHHHHHHHHHHhC------CCcEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE--
Confidence 57999999999999999999998 999887766533 3333221 11 121
Q ss_pred CCcCCHhhhhccCCeEEEeccchHHH--HHHHHHHhcCCCCcEE-EEecCchhhhhhcccccCCCCccEEEeccCCCchh
Q 007951 167 GTLGDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPS 243 (583)
Q Consensus 167 ~t~~d~~Eav~~ADIVILavpd~a~~--~Vl~eI~~~Lk~GaiL-~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~ 243 (583)
..+..+++++||+||.|+|++... .++.++.+.++++++| +..+.+.+..+.+ ......+++.+|+-.|.+.
T Consensus 72 --~~~~~~~~~~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~~---~~~~~~r~~g~h~~~Pv~~ 146 (288)
T PRK09260 72 --SLDLKAAVADADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEIAS---FTKRPERVIAMHFFNPVHK 146 (288)
T ss_pred --eCcHHHhhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh---hcCCcccEEEEecCCCccc
Confidence 356778999999999999988753 5778898999999977 5677777666544 2223346788888655533
Q ss_pred hHHhHhccccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 007951 244 VRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (583)
Q Consensus 244 vR~lf~~G~e~~G~Gv~aliAv~qd~sgeale~a~ala~aIG~~ 287 (583)
+--..++.+...+.+.++.+..++..+|..
T Consensus 147 --------------~~Lve~v~g~~t~~~~~~~~~~~l~~lg~~ 176 (288)
T PRK09260 147 --------------MKLVELIRGLETSDETVQVAKEVAEQMGKE 176 (288)
T ss_pred --------------CceEEEeCCCCCCHHHHHHHHHHHHHcCCe
Confidence 233446667788999999999999999964
No 56
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.20 E-value=1.7e-10 Score=120.24 Aligned_cols=150 Identities=15% Similarity=0.114 Sum_probs=94.5
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHc--------CceecC--CCcCCHhhhhccCCe
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--------GFTEEN--GTLGDIYETISGSDL 181 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~--------G~~~~d--~t~~d~~Eav~~ADI 181 (583)
+||+|||+|+||.++|.+|.+. |++|.++.|..++ .+...+. |..... ....+..|+++.+|+
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~------G~~V~~~~r~~~~-~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~ 77 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASK------GVPVRLWARRPEF-AAALAAERENREYLPGVALPAELYPTADPEEALAGADF 77 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHC------CCeEEEEeCCHHH-HHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCE
Confidence 7999999999999999999998 9998888775333 2323222 311000 014577888999999
Q ss_pred EEEeccchHHHHHHHHHHhcCCCCcEE-EEecCch-----hhhhhcccc--cCCCCccEEEeccCCCchhhHHhHhcccc
Q 007951 182 VLLLISDAAQADNYEKIFSCMKPNSIL-GLSHGFL-----LGHLQSMGL--DFPKNIGVIAVCPKGMGPSVRRLYVQGKE 253 (583)
Q Consensus 182 VILavpd~a~~~Vl~eI~~~Lk~GaiL-~~a~G~~-----i~~ie~~~i--~~p~dv~VI~v~PngPg~~vR~lf~~G~e 253 (583)
||+++|+....++++ .++++.+| ..+.|+. ...+.+ .+ ....++ +++..|+.+...
T Consensus 78 Vi~~v~~~~~~~v~~----~l~~~~~vi~~~~Gi~~~~~~~~~l~~-~l~~~~~~~~-~~~~gP~~a~~~---------- 141 (328)
T PRK14618 78 AVVAVPSKALRETLA----GLPRALGYVSCAKGLAPDGGRLSELAR-VLEFLTQARV-AVLSGPNHAEEI---------- 141 (328)
T ss_pred EEEECchHHHHHHHH----hcCcCCEEEEEeeccccCCCccchHHH-HHHHhcCCCe-EEEECccHHHHH----------
Confidence 999999997766654 45677654 4667764 222221 00 001222 356777665544
Q ss_pred ccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 007951 254 INGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (583)
Q Consensus 254 ~~G~Gv~aliAv~qd~sgeale~a~ala~aIG~~ 287 (583)
+.|.+.+... ...+.+..+.+..++...|..
T Consensus 142 --~~~~~~~~~~-~~~~~~~~~~v~~ll~~~~~~ 172 (328)
T PRK14618 142 --ARFLPAATVV-ASPEPGLARRVQAAFSGPSFR 172 (328)
T ss_pred --HcCCCeEEEE-EeCCHHHHHHHHHHhCCCcEE
Confidence 2444432222 223567788899999988853
No 57
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=99.20 E-value=4.7e-10 Score=124.05 Aligned_cols=152 Identities=14% Similarity=0.077 Sum_probs=105.3
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHH---cCceecCCCcCCHhhhhcc---CCeEEE
Q 007951 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA---AGFTEENGTLGDIYETISG---SDLVLL 184 (583)
Q Consensus 111 ikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~---~G~~~~d~t~~d~~Eav~~---ADIVIL 184 (583)
+.+|||||+|+||.+||+||.++ |++|.|++|..++..+...+ .|... -....+++|+++. +|+||+
T Consensus 6 ~~~IG~IGLG~MG~~mA~nL~~~------G~~V~V~NRt~~k~~~l~~~~~~~Ga~~-~~~a~s~~e~v~~l~~~dvIi~ 78 (493)
T PLN02350 6 LSRIGLAGLAVMGQNLALNIAEK------GFPISVYNRTTSKVDETVERAKKEGNLP-LYGFKDPEDFVLSIQKPRSVII 78 (493)
T ss_pred CCCEEEEeeHHHHHHHHHHHHhC------CCeEEEECCCHHHHHHHHHhhhhcCCcc-cccCCCHHHHHhcCCCCCEEEE
Confidence 36899999999999999999999 99999998876554433321 14320 0014678888876 999999
Q ss_pred eccchHHH-HHHHHHHhcCCCCcEEEEecCchhh---hhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCce
Q 007951 185 LISDAAQA-DNYEKIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGIN 260 (583)
Q Consensus 185 avpd~a~~-~Vl~eI~~~Lk~GaiL~~a~G~~i~---~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~ 260 (583)
++|+.... +|++.+.+.+++|++|++.+-.... ...+ . .-.+++.++ -+|-.-|.. .. -.|.
T Consensus 79 ~v~~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~-~-l~~~Gi~fl-dapVSGG~~------gA----~~G~- 144 (493)
T PLN02350 79 LVKAGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIK-E-AAEKGLLYL-GMGVSGGEE------GA----RNGP- 144 (493)
T ss_pred ECCCcHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHH-H-HHHcCCeEE-eCCCcCCHH------Hh----cCCC-
Confidence 99987765 5778899999999999988655321 1111 1 113567766 567332222 11 1454
Q ss_pred EEEeecCCCCHHHHHHHHHHHHHhCC
Q 007951 261 SSFAVHQDVDGRATNVALGWSVALGS 286 (583)
Q Consensus 261 aliAv~qd~sgeale~a~ala~aIG~ 286 (583)
+ +-+.. +.++.+.++-+++.+|.
T Consensus 145 ~-im~GG--~~~a~~~v~pvL~~ia~ 167 (493)
T PLN02350 145 S-LMPGG--SFEAYKNIEDILEKVAA 167 (493)
T ss_pred e-EEecC--CHHHHHHHHHHHHHHhh
Confidence 4 45565 57799999999999995
No 58
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=99.20 E-value=7e-10 Score=113.86 Aligned_cols=193 Identities=18% Similarity=0.121 Sum_probs=121.1
Q ss_pred EEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccchH-HHHH
Q 007951 116 VIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA-QADN 194 (583)
Q Consensus 116 IIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~a-~~~V 194 (583)
|||+|+||.++|++|.++ |++|++++++.+ ..+...+.|... ..+..++++++|+||+++|+.. ..++
T Consensus 1 ~IGlG~mG~~mA~~L~~~------G~~V~v~dr~~~-~~~~l~~~g~~~----~~s~~~~~~~advVil~vp~~~~~~~v 69 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKA------GHPVRVFDLFPD-AVEEAVAAGAQA----AASPAEAAEGADRVITMLPAGQHVISV 69 (288)
T ss_pred CCcccHhHHHHHHHHHhC------CCeEEEEeCCHH-HHHHHHHcCCee----cCCHHHHHhcCCEEEEeCCChHHHHHH
Confidence 699999999999999998 999888776644 456666777764 5688899999999999999855 4677
Q ss_pred H---HHHHhcCCCCcEEEEecCchhhhhhcc-cccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEeecCCCC
Q 007951 195 Y---EKIFSCMKPNSILGLSHGFLLGHLQSM-GLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVD 270 (583)
Q Consensus 195 l---~eI~~~Lk~GaiL~~a~G~~i~~ie~~-~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv~qd~s 270 (583)
+ +.+.+.+++|++|++.+++.....+.. ......++.+|- +|-.-+.. .... |...+++ .. +
T Consensus 70 ~~g~~~l~~~~~~g~~vid~st~~p~~~~~~~~~~~~~g~~~vd-aPv~Gg~~---~a~~-------g~l~~~~-gg--~ 135 (288)
T TIGR01692 70 YSGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAAHGAVFMD-APVSGGVG---GARA-------GTLTFMV-GG--V 135 (288)
T ss_pred HcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEE-CCCCCCHH---HHhh-------CcEEEEE-CC--C
Confidence 7 578889999999999988764322110 011124677775 36332222 2233 3444333 33 4
Q ss_pred HHHHHHHHHHHHHhCCCcccccch-hhhhhhhhhhhhhhHhhHHHHHHHHHHHHHHHcCCCHHHHHH
Q 007951 271 GRATNVALGWSVALGSPFTFATTL-EQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYK 336 (583)
Q Consensus 271 geale~a~ala~aIG~~~vieTtf-~eE~~sDlfgeqtvLsG~~pAlieAl~d~~Ve~Gl~~e~A~~ 336 (583)
.+..+.+..++..+|.. ++..-. ..-...++.. ...+.+.+.++.|++ ..+.+.|++++..+.
T Consensus 136 ~~~~~~~~~~l~~~g~~-~~~~g~~g~g~~~Kl~~-n~~~~~~~~~~~Ea~-~la~~~Gld~~~~~~ 199 (288)
T TIGR01692 136 AEEFAAAEPVLGPMGRN-IVHCGDHGAGQAAKICN-NMLLGISMIGTAEAM-ALGEKLGLDPKVLFE 199 (288)
T ss_pred HHHHHHHHHHHHHhcCC-eEeeCCCCHHHHHHHHH-HHHHHHHHHHHHHHH-HHHHHcCCCHHHHHH
Confidence 57889999999999964 222111 1111111211 111222222333333 345688999886654
No 59
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.19 E-value=1.5e-09 Score=112.65 Aligned_cols=194 Identities=13% Similarity=0.116 Sum_probs=123.8
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHH-----------HHHcCceecC---------CCcC
Q 007951 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEEN---------GTLG 170 (583)
Q Consensus 111 ikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~-----------A~~~G~~~~d---------~t~~ 170 (583)
|++|+|||.|.||.++|.+|.++ |++|++.++..+ ..+. ..+.|..... ..+.
T Consensus 2 ~~~V~VIG~G~mG~~iA~~la~~------G~~V~v~d~~~~-~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~ 74 (308)
T PRK06129 2 MGSVAIIGAGLIGRAWAIVFARA------GHEVRLWDADPA-AAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTD 74 (308)
T ss_pred CcEEEEECccHHHHHHHHHHHHC------CCeeEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEEC
Confidence 47899999999999999999998 999888776533 2332 2244532100 1246
Q ss_pred CHhhhhccCCeEEEeccchH--HHHHHHHHHhcCCCCcEEE-EecCchhhhhhcccccCCCCccEEEeccCCCchhhHHh
Q 007951 171 DIYETISGSDLVLLLISDAA--QADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRL 247 (583)
Q Consensus 171 d~~Eav~~ADIVILavpd~a--~~~Vl~eI~~~Lk~GaiL~-~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~l 247 (583)
+..++++++|+|+.++|+.. ...++.++.+..++..+|. -+++..+..+.+ .++..-.++..||-.|.+..
T Consensus 75 ~~~~a~~~ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ssts~~~~~~la~---~~~~~~~~~~~hp~~p~~~~--- 148 (308)
T PRK06129 75 SLADAVADADYVQESAPENLELKRALFAELDALAPPHAILASSTSALLASAFTE---HLAGRERCLVAHPINPPYLI--- 148 (308)
T ss_pred cHHHhhCCCCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEEeCCCCCHHHHHH---hcCCcccEEEEecCCCcccC---
Confidence 78889999999999999874 4557778877766665543 334444444544 33444579999997665441
Q ss_pred HhccccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhHhhHH-HHHHHHHHHHHHH
Q 007951 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAV-HGIVESLFRRFTE 326 (583)
Q Consensus 248 f~~G~e~~G~Gv~aliAv~qd~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvLsG~~-pAlieAl~d~~Ve 326 (583)
. -..++++...+.+.++.++.++..+|.. ++.. ..+ ... | +++-+ .+++.-++..+.+
T Consensus 149 ----------~-lveiv~~~~t~~~~~~~~~~~~~~lG~~-~v~v--~~~-~~G-~-----i~nrl~~a~~~EA~~l~~~ 207 (308)
T PRK06129 149 ----------P-VVEVVPAPWTAPATLARAEALYRAAGQS-PVRL--RRE-IDG-F-----VLNRLQGALLREAFRLVAD 207 (308)
T ss_pred ----------c-eEEEeCCCCCCHHHHHHHHHHHHHcCCE-EEEe--cCC-Ccc-H-----HHHHHHHHHHHHHHHHHHc
Confidence 1 1236667778899999999999999964 2211 011 111 1 22222 2334444444556
Q ss_pred cCCCHHHHHHHH
Q 007951 327 NGMNEDLAYKNT 338 (583)
Q Consensus 327 ~Gl~~e~A~~~~ 338 (583)
.|+++++.....
T Consensus 208 g~~~~~~id~~~ 219 (308)
T PRK06129 208 GVASVDDIDAVI 219 (308)
T ss_pred CCCCHHHHHHHH
Confidence 678998876654
No 60
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=99.18 E-value=4.7e-11 Score=110.19 Aligned_cols=114 Identities=26% Similarity=0.314 Sum_probs=73.9
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccchHH
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~a~ 191 (583)
.||+|||.|+.|.++++.|.+. |++|......+..+.+++.+. .. +....+..|+++++|+|||+|||+.+
T Consensus 11 l~I~iIGaGrVG~~La~aL~~a------g~~v~~v~srs~~sa~~a~~~--~~-~~~~~~~~~~~~~aDlv~iavpDdaI 81 (127)
T PF10727_consen 11 LKIGIIGAGRVGTALARALARA------GHEVVGVYSRSPASAERAAAF--IG-AGAILDLEEILRDADLVFIAVPDDAI 81 (127)
T ss_dssp -EEEEECTSCCCCHHHHHHHHT------TSEEEEESSCHH-HHHHHHC----T-T-----TTGGGCC-SEEEE-S-CCHH
T ss_pred cEEEEECCCHHHHHHHHHHHHC------CCeEEEEEeCCcccccccccc--cc-cccccccccccccCCEEEEEechHHH
Confidence 7899999999999999999998 987644333333444444432 21 22256778999999999999999999
Q ss_pred HHHHHHHHhc--CCCCcEEEEecCch-hhhhhcccccCCCCccEEEecc
Q 007951 192 ADNYEKIFSC--MKPNSILGLSHGFL-LGHLQSMGLDFPKNIGVIAVCP 237 (583)
Q Consensus 192 ~~Vl~eI~~~--Lk~GaiL~~a~G~~-i~~ie~~~i~~p~dv~VI~v~P 237 (583)
.+++++|... +++|++|.+++|-. ...++. .-..+..+..+||
T Consensus 82 ~~va~~La~~~~~~~g~iVvHtSGa~~~~vL~p---~~~~Ga~~~s~HP 127 (127)
T PF10727_consen 82 AEVAEQLAQYGAWRPGQIVVHTSGALGSDVLAP---ARERGAIVASLHP 127 (127)
T ss_dssp HHHHHHHHCC--S-TT-EEEES-SS--GGGGHH---HHHTT-EEEEEEE
T ss_pred HHHHHHHHHhccCCCCcEEEECCCCChHHhhhh---HHHCCCeEEEeCc
Confidence 9999999987 89999999999964 332221 1124667777777
No 61
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.17 E-value=1.6e-09 Score=112.05 Aligned_cols=147 Identities=17% Similarity=0.126 Sum_probs=105.4
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhcc---CCeEEEeccc
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG---SDLVLLLISD 188 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~---ADIVILavpd 188 (583)
++|||||+|+||.++|++|.+. |++|+++++..+ ..+.+.+.|... ..+..|+++. +|+|++++|+
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~------g~~v~v~dr~~~-~~~~~~~~g~~~----~~~~~e~~~~~~~~dvvi~~v~~ 69 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRG------GHEVVGYDRNPE-AVEALAEEGATG----ADSLEELVAKLPAPRVVWLMVPA 69 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHC------CCeEEEEECCHH-HHHHHHHCCCee----cCCHHHHHhhcCCCCEEEEEecC
Confidence 5899999999999999999998 999888776643 445556678775 5678888775 6999999999
Q ss_pred h-HHHHHHHHHHhcCCCCcEEEEecCchh---hhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEe
Q 007951 189 A-AQADNYEKIFSCMKPNSILGLSHGFLL---GHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (583)
Q Consensus 189 ~-a~~~Vl~eI~~~Lk~GaiL~~a~G~~i---~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliA 264 (583)
. ...++++.+.+.+++|++|++.+.... ..+.. . .-..++.++- +|..-+..- .+ .|. .++
T Consensus 70 ~~~~~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~-~-~~~~g~~~~d-apvsG~~~~----a~------~g~-~~~- 134 (301)
T PRK09599 70 GEITDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAE-L-LAEKGIHFVD-VGTSGGVWG----LE------RGY-CLM- 134 (301)
T ss_pred CcHHHHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHH-H-HHHcCCEEEe-CCCCcCHHH----Hh------cCC-eEE-
Confidence 8 667788889999999998887755432 11211 1 1135778875 784433221 11 354 433
Q ss_pred ecCCCCHHHHHHHHHHHHHhCC
Q 007951 265 VHQDVDGRATNVALGWSVALGS 286 (583)
Q Consensus 265 v~qd~sgeale~a~ala~aIG~ 286 (583)
+.. +.+..+.++.+++.+|.
T Consensus 135 ~gG--~~~~~~~~~~~l~~~~~ 154 (301)
T PRK09599 135 IGG--DKEAVERLEPIFKALAP 154 (301)
T ss_pred ecC--CHHHHHHHHHHHHHHcc
Confidence 343 57789999999999997
No 62
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.16 E-value=7.9e-10 Score=113.47 Aligned_cols=152 Identities=20% Similarity=0.245 Sum_probs=108.7
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHH-----------cCceec--------C-CCcC
Q 007951 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----------AGFTEE--------N-GTLG 170 (583)
Q Consensus 111 ikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~-----------~G~~~~--------d-~t~~ 170 (583)
++||+|||.|.||.++|.+|..+ |++|++.++..+ ..+.+.+ .|.... . ....
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~------G~~V~l~d~~~~-~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~ 76 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALA------GYDVLLNDVSAD-RLEAGLATINGNLARQVAKGKISEEARAAALARISTAT 76 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHC------CCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeC
Confidence 48999999999999999999998 999887766533 2333221 232100 0 0134
Q ss_pred CHhhhhccCCeEEEeccchHH--HHHHHHHHhcCCCCcEEE-EecCchhhhhhcccccCCCCccEEEeccCCCchhhHHh
Q 007951 171 DIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRL 247 (583)
Q Consensus 171 d~~Eav~~ADIVILavpd~a~--~~Vl~eI~~~Lk~GaiL~-~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~l 247 (583)
+. +.+++||+||.++|.+.. ..++.+|.+.++++++|+ .++++.+..+.+ .....-+++.+|+--|.+..
T Consensus 77 ~~-~~~~~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s~la~---~~~~~~r~~g~h~~~p~~~~--- 149 (292)
T PRK07530 77 DL-EDLADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISITRLAS---ATDRPERFIGIHFMNPVPVM--- 149 (292)
T ss_pred CH-HHhcCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh---hcCCcccEEEeeccCCcccC---
Confidence 45 457899999999997643 467889999999999864 888888766655 22233578888886666652
Q ss_pred HhccccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 007951 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (583)
Q Consensus 248 f~~G~e~~G~Gv~aliAv~qd~sgeale~a~ala~aIG~~ 287 (583)
.++ - +.++...+.+.++.+..++..+|..
T Consensus 150 ---------~~v-e-i~~g~~t~~~~~~~~~~~~~~~gk~ 178 (292)
T PRK07530 150 ---------KLV-E-LIRGIATDEATFEAAKEFVTKLGKT 178 (292)
T ss_pred ---------ceE-E-EeCCCCCCHHHHHHHHHHHHHcCCe
Confidence 233 2 4557778899999999999999964
No 63
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=99.16 E-value=1.3e-09 Score=111.72 Aligned_cols=149 Identities=17% Similarity=0.196 Sum_probs=101.5
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccchHH
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~a~ 191 (583)
++|+|||+|.||.++|.+|.+. |++|++++++ ....+.+.+.|... +.+..++++++|+||+++|+...
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~------g~~v~~~d~~-~~~~~~~~~~g~~~----~~~~~e~~~~~d~vi~~vp~~~~ 71 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKA------GYSLVVYDRN-PEAVAEVIAAGAET----ASTAKAVAEQCDVIITMLPNSPH 71 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHC------CCeEEEEcCC-HHHHHHHHHCCCee----cCCHHHHHhcCCEEEEeCCCHHH
Confidence 7899999999999999999988 8888766554 34455566677654 56788999999999999997766
Q ss_pred H-HHH---HHHHhcCCCCcEEEEecCchhh---hhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEe
Q 007951 192 A-DNY---EKIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (583)
Q Consensus 192 ~-~Vl---~eI~~~Lk~GaiL~~a~G~~i~---~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliA 264 (583)
. .++ +++.+.+++|++|++++.+... .+.+ . ....++.++ -+|-.-+... .. .|...++.
T Consensus 72 ~~~v~~~~~~~~~~~~~g~iiid~st~~~~~~~~l~~-~-~~~~g~~~~-d~pv~g~~~~----a~------~g~l~i~~ 138 (296)
T PRK11559 72 VKEVALGENGIIEGAKPGTVVIDMSSIAPLASREIAA-A-LKAKGIEML-DAPVSGGEPK----AI------DGTLSVMV 138 (296)
T ss_pred HHHHHcCcchHhhcCCCCcEEEECCCCCHHHHHHHHH-H-HHHcCCcEE-EcCCCCCHHH----Hh------hCcEEEEE
Confidence 4 455 3578889999999988777643 2222 0 112355554 2352211110 00 24434333
Q ss_pred ecCCCCHHHHHHHHHHHHHhCCC
Q 007951 265 VHQDVDGRATNVALGWSVALGSP 287 (583)
Q Consensus 265 v~qd~sgeale~a~ala~aIG~~ 287 (583)
.. +.+..+.+..++..+|..
T Consensus 139 -gg--~~~~~~~~~~~l~~~~~~ 158 (296)
T PRK11559 139 -GG--DKAIFDKYYDLMKAMAGS 158 (296)
T ss_pred -CC--CHHHHHHHHHHHHHhcCC
Confidence 33 468899999999999964
No 64
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=99.13 E-value=2e-09 Score=118.54 Aligned_cols=148 Identities=17% Similarity=0.118 Sum_probs=101.4
Q ss_pred EEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHc--C--ceecCCCcCCHhhhh---ccCCeEEEe
Q 007951 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--G--FTEENGTLGDIYETI---SGSDLVLLL 185 (583)
Q Consensus 113 kIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~--G--~~~~d~t~~d~~Eav---~~ADIVILa 185 (583)
+|||||+|+||.+||+||.++ |++|++++|+.++..+...+. | +.. ..+..+++ +++|+|+++
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~------G~~V~v~drt~~~~~~l~~~~~~g~~~~~----~~s~~e~v~~l~~~dvIil~ 70 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADH------GFTVSVYNRTPEKTDEFLAEHAKGKKIVG----AYSIEEFVQSLERPRKIMLM 70 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhc------CCeEEEEeCCHHHHHHHHhhccCCCCcee----cCCHHHHHhhcCCCCEEEEE
Confidence 489999999999999999999 999988888755543333321 2 332 45667766 468999999
Q ss_pred ccc-hHHHHHHHHHHhcCCCCcEEEEecCch---hhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceE
Q 007951 186 ISD-AAQADNYEKIFSCMKPNSILGLSHGFL---LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINS 261 (583)
Q Consensus 186 vpd-~a~~~Vl~eI~~~Lk~GaiL~~a~G~~---i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~a 261 (583)
+|+ ....++++++.++|++|++|++.+-.. ...... . .-.+++.+|.....+ |..- =+ .|. +
T Consensus 71 v~~~~~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~-~-l~~~gi~fvdapVsG-G~~g---A~-------~G~-~ 136 (467)
T TIGR00873 71 VKAGAPVDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYK-E-LKAKGILFVGSGVSG-GEEG---AR-------KGP-S 136 (467)
T ss_pred CCCcHHHHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHH-H-HHhcCCEEEcCCCCC-CHHH---Hh-------cCC-c
Confidence 998 556779999999999999999886532 111111 1 224578877544433 2220 01 343 4
Q ss_pred EEeecCCCCHHHHHHHHHHHHHhCCC
Q 007951 262 SFAVHQDVDGRATNVALGWSVALGSP 287 (583)
Q Consensus 262 liAv~qd~sgeale~a~ala~aIG~~ 287 (583)
+-+.. +.++.+.++-+++.+|..
T Consensus 137 -im~GG--~~~a~~~~~p~L~~ia~~ 159 (467)
T TIGR00873 137 -IMPGG--SAEAWPLVAPIFQKIAAK 159 (467)
T ss_pred -CCCCC--CHHHHHHHHHHHHHHhhh
Confidence 34455 578999999999999864
No 65
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=99.09 E-value=3.8e-09 Score=116.34 Aligned_cols=150 Identities=14% Similarity=0.078 Sum_probs=101.9
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHH---cCceecCCCcCCHhhhhc---cCCeEEEe
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA---AGFTEENGTLGDIYETIS---GSDLVLLL 185 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~---~G~~~~d~t~~d~~Eav~---~ADIVILa 185 (583)
.+|||||+|+||.++|++|.++ |++|.+++|+.++..+.... .|... ..+.+++|+++ ++|+|+++
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~------G~~V~v~dr~~~~~~~l~~~~~~~g~~i--~~~~s~~e~v~~l~~~d~Iil~ 73 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASR------GFKISVYNRTYEKTEEFVKKAKEGNTRV--KGYHTLEELVNSLKKPRKVILL 73 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHC------CCeEEEEeCCHHHHHHHHHhhhhcCCcc--eecCCHHHHHhcCCCCCEEEEE
Confidence 5899999999999999999999 99998888765543332221 25321 11568888886 58999999
Q ss_pred ccchH-HHHHHHHHHhcCCCCcEEEEecCch----hhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCce
Q 007951 186 ISDAA-QADNYEKIFSCMKPNSILGLSHGFL----LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGIN 260 (583)
Q Consensus 186 vpd~a-~~~Vl~eI~~~Lk~GaiL~~a~G~~----i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~ 260 (583)
+||.. ..++++++.|+|++|++|++.+... ....+. ...+++.++ -+|-.-|..- =+ .|-
T Consensus 74 v~~~~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~---l~~~Gi~fl-dapVSGG~~g---A~-------~G~- 138 (470)
T PTZ00142 74 IKAGEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKR---CEEKGILYL-GMGVSGGEEG---AR-------YGP- 138 (470)
T ss_pred eCChHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHH---HHHcCCeEE-cCCCCCCHHH---Hh-------cCC-
Confidence 77664 5678999999999999998886532 111111 223577776 5562222220 01 344
Q ss_pred EEEeecCCCCHHHHHHHHHHHHHhCCC
Q 007951 261 SSFAVHQDVDGRATNVALGWSVALGSP 287 (583)
Q Consensus 261 aliAv~qd~sgeale~a~ala~aIG~~ 287 (583)
+ +-+.. +.++.+.++-+++.+|..
T Consensus 139 ~-lm~GG--~~~a~~~~~piL~~ia~~ 162 (470)
T PTZ00142 139 S-LMPGG--NKEAYDHVKDILEKCSAK 162 (470)
T ss_pred E-EEEeC--CHHHHHHHHHHHHHHhhh
Confidence 4 45555 578999999999999964
No 66
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=99.06 E-value=7.1e-09 Score=115.16 Aligned_cols=150 Identities=15% Similarity=0.184 Sum_probs=111.5
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHH-----------HHHcC-------------cee
Q 007951 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAG-------------FTE 164 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~-----------A~~~G-------------~~~ 164 (583)
..|++|||||+|.||..||.++..+ |++|++.+++.+. .+. ..+.| +..
T Consensus 5 ~~i~~V~VIGaG~MG~gIA~~la~a------G~~V~l~D~~~e~-l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~ 77 (507)
T PRK08268 5 PSIATVAVIGAGAMGAGIAQVAAQA------GHTVLLYDARAGA-AAAARDGIAARLAKLVEKGKLTAEQADAALARLRP 77 (507)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhC------CCeEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE
Confidence 3468999999999999999999998 9999887766442 333 34455 232
Q ss_pred cCCCcCCHhhhhccCCeEEEeccchHHH--HHHHHHHhcCCCCcEE-EEecCchhhhhhcccccCCCCccEEEeccCCCc
Q 007951 165 ENGTLGDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMG 241 (583)
Q Consensus 165 ~d~t~~d~~Eav~~ADIVILavpd~a~~--~Vl~eI~~~Lk~GaiL-~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg 241 (583)
..+.++ +.+||+||-++|.+... .++.++...++++++| +.++.+.+..+.. .....-+++.+|.=-|.
T Consensus 78 ----~~~~~~-~~~aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~~la~---~~~~p~r~~G~hff~Pa 149 (507)
T PRK08268 78 ----VEALAD-LADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSITAIAA---ALKHPERVAGLHFFNPV 149 (507)
T ss_pred ----eCCHHH-hCCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHh---hcCCcccEEEEeecCCc
Confidence 346654 56999999999987764 3677888888899988 5788888766654 22223468888987777
Q ss_pred hhhHHhHhccccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 007951 242 PSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (583)
Q Consensus 242 ~~vR~lf~~G~e~~G~Gv~aliAv~qd~sgeale~a~ala~aIG~~ 287 (583)
+.+ ...- +..+...+.+.++.+..++..+|..
T Consensus 150 ~v~-------------~LvE-vv~g~~Ts~~~~~~~~~l~~~lgk~ 181 (507)
T PRK08268 150 PLM-------------KLVE-VVSGLATDPAVADALYALARAWGKT 181 (507)
T ss_pred ccC-------------eeEE-EeCCCCCCHHHHHHHHHHHHHcCCc
Confidence 773 1222 4557778899999999999999974
No 67
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.06 E-value=7.9e-09 Score=109.02 Aligned_cols=198 Identities=14% Similarity=0.113 Sum_probs=118.7
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcC---------ceecC--CCcCCHhhhhccCC
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG---------FTEEN--GTLGDIYETISGSD 180 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G---------~~~~d--~t~~d~~Eav~~AD 180 (583)
+||+|||.|+||.++|..|.++ | +++++.+. +...+...+.+ +...+ ....+..++++++|
T Consensus 8 mkI~IiGaGa~G~alA~~La~~------g-~v~l~~~~-~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aD 79 (341)
T PRK12439 8 PKVVVLGGGSWGTTVASICARR------G-PTLQWVRS-AETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCAD 79 (341)
T ss_pred CeEEEECCCHHHHHHHHHHHHC------C-CEEEEeCC-HHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCC
Confidence 7999999999999999999988 7 45555544 23333333322 11000 01346678899999
Q ss_pred eEEEeccchHHHHHHHHHHhcCCCCc-EEEEecCchh-------hhhhcccccCCCCccEEEeccCCCchhhHHhHhccc
Q 007951 181 LVLLLISDAAQADNYEKIFSCMKPNS-ILGLSHGFLL-------GHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGK 252 (583)
Q Consensus 181 IVILavpd~a~~~Vl~eI~~~Lk~Ga-iL~~a~G~~i-------~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~ 252 (583)
+||+++|++.+.+++++|.+++++++ +|+...|+.. ..+++ .+|....+++..|+.+...
T Consensus 80 lVilavps~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~---~l~~~~~~~l~GP~~a~ev--------- 147 (341)
T PRK12439 80 VVVMGVPSHGFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEE---VLPGHPAGILAGPNIAREV--------- 147 (341)
T ss_pred EEEEEeCHHHHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHH---HcCCCCeEEEECCCHHHHH---------
Confidence 99999999999999999999998886 5678889864 24433 3343334567788766554
Q ss_pred cccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhHhhHHHH---HHHHHHHHHHHcCC
Q 007951 253 EINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG---IVESLFRRFTENGM 329 (583)
Q Consensus 253 e~~G~Gv~aliAv~qd~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvLsG~~pA---lieAl~d~~Ve~Gl 329 (583)
+.|.++.+.+... +.+..+.+.+++..-|. .-+...|+.+.+ ++|.+-- +.-.+.+ +...|-
T Consensus 148 ---~~g~~t~~via~~-~~~~~~~v~~lf~~~~~--------~v~~s~Di~gve--~~~alkNv~aia~G~~~-g~~~g~ 212 (341)
T PRK12439 148 ---AEGYAAAAVLAMP-DQHLATRLSPLFRTRRF--------RVYTTDDVVGVE--MAGALKNVFAIAVGMGY-SLGIGE 212 (341)
T ss_pred ---HcCCCeEEEEEeC-CHHHHHHHHHHhCCCCE--------EEEEcCchHHHH--HHHHHHHHHHHHHHHHH-HhcCCc
Confidence 3566654443332 34444444555544442 223334665544 5555544 2233333 335554
Q ss_pred CHHHH-HHHHHHHHHH
Q 007951 330 NEDLA-YKNTVECITG 344 (583)
Q Consensus 330 ~~e~A-~~~~~q~l~G 344 (583)
...-| ...+++|+..
T Consensus 213 n~~aali~~~~~E~~~ 228 (341)
T PRK12439 213 NTRAMVIARALREMTK 228 (341)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 44322 3355566544
No 68
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=99.05 E-value=3.3e-09 Score=105.46 Aligned_cols=155 Identities=20% Similarity=0.173 Sum_probs=104.6
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHH-HcCceecCCCcCCHhhhhccCCeEEEeccch
Q 007951 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-AAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (583)
Q Consensus 111 ikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~-~~G~~~~d~t~~d~~Eav~~ADIVILavpd~ 189 (583)
+|+|+|||.|+||.++|+.|.+. |++|+++.++.+++.+.+. ..+... +..++.++++.+|+|||++|-.
T Consensus 1 m~~~~i~GtGniG~alA~~~a~a------g~eV~igs~r~~~~~~a~a~~l~~~i---~~~~~~dA~~~aDVVvLAVP~~ 71 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKA------GHEVIIGSSRGPKALAAAAAALGPLI---TGGSNEDAAALADVVVLAVPFE 71 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhC------CCeEEEecCCChhHHHHHHHhhcccc---ccCChHHHHhcCCEEEEeccHH
Confidence 48999999999999999999999 9999999887766554443 333332 2568999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCcEEEEecC-----chh-------------hhhhcccccCCCCccEEEeccCCCchhhHHhHhcc
Q 007951 190 AQADNYEKIFSCMKPNSILGLSHG-----FLL-------------GHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQG 251 (583)
Q Consensus 190 a~~~Vl~eI~~~Lk~GaiL~~a~G-----~~i-------------~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G 251 (583)
.+.++++++...+. |+||+++.- +.. ..+++ .+|. -+||..-=+.+...+ .++
T Consensus 72 a~~~v~~~l~~~~~-~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~---~lp~-akVVkAFn~i~a~~l----~~~ 142 (211)
T COG2085 72 AIPDVLAELRDALG-GKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAK---LLPG-AKVVKAFNTIPAAVL----ADL 142 (211)
T ss_pred HHHhHHHHHHHHhC-CeEEEecCCCccccCCccccccCCCCCcHHHHHHH---HCCC-cchhhhhcccCHHHh----ccC
Confidence 99999999998886 888876621 110 01111 2222 244433333333332 222
Q ss_pred ccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 007951 252 KEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (583)
Q Consensus 252 ~e~~G~Gv~aliAv~qd~sgeale~a~ala~aIG~~ 287 (583)
... +.....++| .. +.++++.+.+|.+.+|+.
T Consensus 143 ~~~-~~~~~v~va-gD--D~~Ak~~v~~L~~~iG~~ 174 (211)
T COG2085 143 AKP-GGRRDVLVA-GD--DAEAKAVVAELAEDIGFR 174 (211)
T ss_pred CCc-CCceeEEEe-cC--cHHHHHHHHHHHHhcCcc
Confidence 111 112333333 33 678999999999999985
No 69
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=99.02 E-value=1.8e-08 Score=108.65 Aligned_cols=201 Identities=16% Similarity=0.122 Sum_probs=118.3
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHH-------------------HcC-ceecCCCcCC
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-------------------AAG-FTEENGTLGD 171 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~-------------------~~G-~~~~d~t~~d 171 (583)
|+|+|||+|.||.++|.+|.+. |++|++.++...+ .+... +.| +.. ..+
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~------G~~V~~~d~~~~~-v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~----~~~ 69 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADL------GHEVTGVDIDQEK-VDKLNKGKSPIYEPGLDELLAKALAAGRLRA----TTD 69 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhc------CCeEEEEECCHHH-HHHhhcCCCCCCCCCHHHHHHHhhhcCCeEE----ECC
Confidence 5899999999999999999998 9998766554332 22211 123 222 356
Q ss_pred HhhhhccCCeEEEeccchH----------HHHHHHHHHhcCCCCcEEEEecCchhh---hhhcccc-c---CCCCcc-EE
Q 007951 172 IYETISGSDLVLLLISDAA----------QADNYEKIFSCMKPNSILGLSHGFLLG---HLQSMGL-D---FPKNIG-VI 233 (583)
Q Consensus 172 ~~Eav~~ADIVILavpd~a----------~~~Vl~eI~~~Lk~GaiL~~a~G~~i~---~ie~~~i-~---~p~dv~-VI 233 (583)
..++++++|+||+++|+.. ...+++.|.+++++|++|++.+++... .+....+ . .....+ .+
T Consensus 70 ~~~~~~~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v 149 (411)
T TIGR03026 70 YEDAIRDADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILERASGLKLGEDFYL 149 (411)
T ss_pred HHHHHhhCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHhhcCCCCCCCceE
Confidence 7888999999999999653 566778899999999998887754211 1110000 0 011222 25
Q ss_pred EeccCC--CchhhHHhHhccccccCCCceEEEeecCCCCHHHHHHHHHHHHHhC-CCcccccchhhhhhhhhhhhhhhHh
Q 007951 234 AVCPKG--MGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALG-SPFTFATTLEQEYRSDIFGERGILL 310 (583)
Q Consensus 234 ~v~Png--Pg~~vR~lf~~G~e~~G~Gv~aliAv~qd~sgeale~a~ala~aIG-~~~vieTtf~eE~~sDlfgeqtvLs 310 (583)
..+|.. +|..+.+.+. .+.++. . .+.++.+.+..++..++ ...+..++.. .-+.-.+-+.+ +.
T Consensus 150 ~~~Pe~~~~G~~~~~~~~---------~~~iv~-G--~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~Ae~~Kl~~N~-~~ 215 (411)
T TIGR03026 150 AYNPEFLREGNAVHDLLN---------PDRIVG-G--ETEEAGEAVAELYAPIIEDGPVLVTSIE-TAEMIKLAENT-FR 215 (411)
T ss_pred EECCCcCCCCChhhhhcC---------CCEEEE-e--CCHHHHHHHHHHHHHhccCCCEEcCCHH-HHHHHHHHHHH-HH
Confidence 677733 2222111111 223233 3 37789999999999997 3322222222 11111111221 22
Q ss_pred hHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 007951 311 GAVHGIVESLFRRFTENGMNEDLAYKN 337 (583)
Q Consensus 311 G~~pAlieAl~d~~Ve~Gl~~e~A~~~ 337 (583)
+.--+++.-+...+.+.|+++++.+..
T Consensus 216 a~~ia~~nE~~~la~~~GiD~~~v~~~ 242 (411)
T TIGR03026 216 AVKIAFANELARICEALGIDVYEVIEA 242 (411)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 222346666677778889988876543
No 70
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.02 E-value=6.1e-09 Score=109.69 Aligned_cols=154 Identities=16% Similarity=0.140 Sum_probs=111.7
Q ss_pred CCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHH-----------HHcCceecC-----CCcCCHh
Q 007951 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA-----------RAAGFTEEN-----GTLGDIY 173 (583)
Q Consensus 110 gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A-----------~~~G~~~~d-----~t~~d~~ 173 (583)
.++||+|||.|.||.++|..+..+ |++|++.++..+ ..+.+ .+.|..... ..+.+++
T Consensus 6 ~i~~VaVIGaG~MG~giA~~~a~a------G~~V~l~D~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~ 78 (321)
T PRK07066 6 DIKTFAAIGSGVIGSGWVARALAH------GLDVVAWDPAPG-AEAALRANVANAWPALERQGLAPGASPARLRFVATIE 78 (321)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhC------CCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHH
Confidence 358999999999999999999998 999988776532 12211 123321100 1245788
Q ss_pred hhhccCCeEEEeccchHHH--HHHHHHHhcCCCCcEEE-EecCchhhhhhcccccCCCCccEEEeccCCCchhhHHhHhc
Q 007951 174 ETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQ 250 (583)
Q Consensus 174 Eav~~ADIVILavpd~a~~--~Vl~eI~~~Lk~GaiL~-~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~ 250 (583)
+++++||+|+-++|..... +++.+|.+.++++++|. -++++.+..+.+ .....-+++.+||=-|.+.++
T Consensus 79 ~av~~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s~la~---~~~~p~R~~g~HffnP~~~~p----- 150 (321)
T PRK07066 79 ACVADADFIQESAPEREALKLELHERISRAAKPDAIIASSTSGLLPTDFYA---RATHPERCVVGHPFNPVYLLP----- 150 (321)
T ss_pred HHhcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHHHHHH---hcCCcccEEEEecCCccccCc-----
Confidence 9999999999999977653 58889999999999764 446776665544 223335799999988877631
Q ss_pred cccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 007951 251 GKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (583)
Q Consensus 251 G~e~~G~Gv~aliAv~qd~sgeale~a~ala~aIG~~ 287 (583)
.-- +.++...+++.++.+.+++..+|..
T Consensus 151 --------LVE-Vv~g~~T~~e~~~~~~~f~~~lGk~ 178 (321)
T PRK07066 151 --------LVE-VLGGERTAPEAVDAAMGIYRALGMR 178 (321)
T ss_pred --------eEE-EeCCCCCCHHHHHHHHHHHHHcCCE
Confidence 111 4568888999999999999999964
No 71
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.99 E-value=5.6e-08 Score=104.12 Aligned_cols=215 Identities=18% Similarity=0.235 Sum_probs=124.1
Q ss_pred cccccchhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCC-------ceEEEEecCCcc---cH-HHHHHc-------
Q 007951 99 DLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-------IVVKVGLRKGSR---SF-AEARAA------- 160 (583)
Q Consensus 99 ~~f~~~~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G-------~~ViVg~r~~s~---s~-~~A~~~------- 160 (583)
..|.++ ..+.+||+|||.|++|.|+|.-|.++ | ++|.++.|+..- .. +.-.+.
T Consensus 2 ~~~~~~---~~~~~ki~ViGaG~wGtAlA~~l~~n------~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~yl 72 (365)
T PTZ00345 2 SLFQKL---RCGPLKVSVIGSGNWGSAISKVVGEN------TQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYL 72 (365)
T ss_pred cchhhc---ccCCCeEEEECCCHHHHHHHHHHHhc------CCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccC
Confidence 345533 44547999999999999999999987 6 677777665421 11 111111
Q ss_pred -CceecC--CCcCCHhhhhccCCeEEEeccchHHHHHHHHHHh--cCCCCc-EEEEecCchhh---------hhhccccc
Q 007951 161 -GFTEEN--GTLGDIYETISGSDLVLLLISDAAQADNYEKIFS--CMKPNS-ILGLSHGFLLG---------HLQSMGLD 225 (583)
Q Consensus 161 -G~~~~d--~t~~d~~Eav~~ADIVILavpd~a~~~Vl~eI~~--~Lk~Ga-iL~~a~G~~i~---------~ie~~~i~ 225 (583)
|+...+ ....|+.+++++||+|+++||++.+.++++++.+ ++++++ +|+.+.|+... .+++ .
T Consensus 73 p~~~Lp~ni~~tsdl~eav~~aDiIvlAVPsq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e---~ 149 (365)
T PTZ00345 73 PGIKLPDNIVAVSDLKEAVEDADLLIFVIPHQFLESVLSQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEE---E 149 (365)
T ss_pred CCCcCCCceEEecCHHHHHhcCCEEEEEcChHHHHHHHHHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHH---H
Confidence 111100 0145778899999999999999999999999998 888776 46788888532 1111 1
Q ss_pred CCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhh
Q 007951 226 FPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGE 305 (583)
Q Consensus 226 ~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv~qd~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfge 305 (583)
++..+- +..=|+.+..+ . .|.++.+++... + .+.++.+.+.+... .|.-.+-.|+.|-
T Consensus 150 l~~~~~-~LsGPs~A~Ev-----a-------~~~pt~~vias~-~---~~~a~~~~~lf~~~-----~frvy~s~Dv~Gv 207 (365)
T PTZ00345 150 LGIPCC-ALSGANVANDV-----A-------REEFSEATIGCE-D---KDDALIWQRLFDRP-----YFKINCVPDVIGV 207 (365)
T ss_pred hCCCeE-EEECCCHHHHH-----H-------cCCCcEEEEEeC-C---HHHHHHHHHHhCCC-----cEEEEEcCCcccc
Confidence 222222 23444443333 2 356654554432 2 34444555555554 2333444577777
Q ss_pred hhhHhhHHHHHH--HHHHHHHHHcCCCHHHHHH-HHHHHHHHHHHHHH
Q 007951 306 RGILLGAVHGIV--ESLFRRFTENGMNEDLAYK-NTVECITGIISKII 350 (583)
Q Consensus 306 qtvLsG~~pAli--eAl~d~~Ve~Gl~~e~A~~-~~~q~l~Glia~li 350 (583)
+ +||.+--++ -++.=-+...|..-.-|+. .++.|+.. +++.+
T Consensus 208 E--l~galKNviAIa~Gi~dGl~~G~N~kaalitrgl~Em~~-l~~a~ 252 (365)
T PTZ00345 208 E--VCGALKNIIALAAGFCDGLGLGTNTKSAIIRIGLEEMKL-FGKIF 252 (365)
T ss_pred h--hhHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHH-HHHHh
Confidence 6 777776632 2222222345554444443 56666543 44444
No 72
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=98.96 E-value=1.4e-08 Score=106.76 Aligned_cols=164 Identities=16% Similarity=0.149 Sum_probs=123.4
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhh-ccCCeEEEeccchH
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLLISDAA 190 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav-~~ADIVILavpd~a 190 (583)
.+|||||+|+||.=+|.-|.+. |+.+++..|.+ --..|...|..- ...+.+.+ +..|+|++||.-..
T Consensus 53 l~IaIIGfGnmGqflAetli~a------Gh~li~hsRsd--yssaa~~yg~~~----ft~lhdlcerhpDvvLlctsils 120 (480)
T KOG2380|consen 53 LVIAIIGFGNMGQFLAETLIDA------GHGLICHSRSD--YSSAAEKYGSAK----FTLLHDLCERHPDVVLLCTSILS 120 (480)
T ss_pred eEEEEEecCcHHHHHHHHHHhc------CceeEecCcch--hHHHHHHhcccc----cccHHHHHhcCCCEEEEEehhhh
Confidence 7899999999999999999999 99888777764 445666677542 44555555 57999999999999
Q ss_pred HHHHHHHHHhc-CCCCcEEEEecCch---hhhhhcccccCCCCccEEEeccCCCchh-hHHhHhccccccCCCceEEEee
Q 007951 191 QADNYEKIFSC-MKPNSILGLSHGFL---LGHLQSMGLDFPKNIGVIAVCPKGMGPS-VRRLYVQGKEINGAGINSSFAV 265 (583)
Q Consensus 191 ~~~Vl~eI~~~-Lk~GaiL~~a~G~~---i~~ie~~~i~~p~dv~VI~v~PngPg~~-vR~lf~~G~e~~G~Gv~aliAv 265 (583)
+..++...-+. +|.|+++++.-.++ ..-+++ .+|+|++++-+||. -|+. + ..+ ++|.|.++--
T Consensus 121 iekilatypfqrlrrgtlfvdvlSvKefek~lfek---YLPkdfDIlctHpm-fGPksv----nh~----wqglpfVydk 188 (480)
T KOG2380|consen 121 IEKILATYPFQRLRRGTLFVDVLSVKEFEKELFEK---YLPKDFDILCTHPM-FGPKSV----NHE----WQGLPFVYDK 188 (480)
T ss_pred HHHHHHhcCchhhccceeEeeeeecchhHHHHHHH---hCccccceEeecCC-cCCCcC----CCc----cccCceEEEE
Confidence 99999887665 89999988765554 333444 78999999999993 3333 1 111 4788886654
Q ss_pred cCC----CCHHHHHHHHHHHHHhCCCcccccchhhhhhh
Q 007951 266 HQD----VDGRATNVALGWSVALGSPFTFATTLEQEYRS 300 (583)
Q Consensus 266 ~qd----~sgeale~a~ala~aIG~~~vieTtf~eE~~s 300 (583)
+.- ...+.-|....++...|| ..++.+.++|++.
T Consensus 189 vRig~~~~r~ercE~fleIf~cegc-kmVemS~eeHDki 226 (480)
T KOG2380|consen 189 VRIGYAASRPERCEFFLEIFACEGC-KMVEMSYEEHDKI 226 (480)
T ss_pred eeccccccchHHHHHHHHHHHhcCC-eEEEEEeeccccc
Confidence 442 226788999999999998 5778888888544
No 73
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.96 E-value=2.1e-08 Score=104.12 Aligned_cols=79 Identities=16% Similarity=0.233 Sum_probs=66.3
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccc
Q 007951 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd 188 (583)
++ |||+|||+|+||.++|+.|.+. |++|.++.|... .++.++++++|+||+++|+
T Consensus 3 ~~-m~I~iiG~G~~G~~lA~~l~~~------G~~V~~~~r~~~------------------~~~~~~~~~advvi~~vp~ 57 (308)
T PRK14619 3 QP-KTIAILGAGAWGSTLAGLASAN------GHRVRVWSRRSG------------------LSLAAVLADADVIVSAVSM 57 (308)
T ss_pred CC-CEEEEECccHHHHHHHHHHHHC------CCEEEEEeCCCC------------------CCHHHHHhcCCEEEEECCh
Confidence 34 8999999999999999999999 999988877532 2567888999999999999
Q ss_pred hHHHHHHHHHHhc-CCCCcEEEEec
Q 007951 189 AAQADNYEKIFSC-MKPNSILGLSH 212 (583)
Q Consensus 189 ~a~~~Vl~eI~~~-Lk~GaiL~~a~ 212 (583)
..+.++++++.++ ++++++|+++.
T Consensus 58 ~~~~~v~~~l~~~~~~~~~ivi~~s 82 (308)
T PRK14619 58 KGVRPVAEQVQALNLPPETIIVTAT 82 (308)
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEeC
Confidence 9888999988774 78888776543
No 74
>PLN02858 fructose-bisphosphate aldolase
Probab=98.95 E-value=3e-08 Score=121.21 Aligned_cols=201 Identities=16% Similarity=0.128 Sum_probs=123.7
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccc-hH
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD-AA 190 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd-~a 190 (583)
++|||||+|+||.+||.+|.+. |++|.++++..++ .+...+.|... ..++.+++++||+||+++|+ ++
T Consensus 325 ~~IGfIGlG~MG~~mA~~L~~~------G~~V~v~dr~~~~-~~~l~~~Ga~~----~~s~~e~~~~aDvVi~~V~~~~~ 393 (1378)
T PLN02858 325 KRIGFIGLGAMGFGMASHLLKS------NFSVCGYDVYKPT-LVRFENAGGLA----GNSPAEVAKDVDVLVIMVANEVQ 393 (1378)
T ss_pred CeEEEECchHHHHHHHHHHHHC------CCEEEEEeCCHHH-HHHHHHcCCee----cCCHHHHHhcCCEEEEecCChHH
Confidence 8899999999999999999998 9998887776443 44555567654 56888999999999999995 44
Q ss_pred HHHHHH---HHHhcCCCCcEEEEecCchhhh---hhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEe
Q 007951 191 QADNYE---KIFSCMKPNSILGLSHGFLLGH---LQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (583)
Q Consensus 191 ~~~Vl~---eI~~~Lk~GaiL~~a~G~~i~~---ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliA 264 (583)
..+++. .+.+.+++|++|++.+-+.... +......-+.++.++ =+|-..++.. . ..|-..+++
T Consensus 394 v~~Vl~g~~g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~~l-DAPVsGg~~~-----A-----~~G~L~imv 462 (1378)
T PLN02858 394 AENVLFGDLGAVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIKLV-DAPVSGGVKR-----A-----AMGTLTIMA 462 (1378)
T ss_pred HHHHHhchhhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcEEE-EccCCCChhh-----h-----hcCCceEEE
Confidence 456762 4778899999998886654322 211000001466655 4563333331 0 234444333
Q ss_pred ecCCCCHHHHHHHHHHHHHhCCCccc-ccchhhhhhhhhhhhhhhHhhHHHH-HHHHHHHHHHHcCCCHHHHHHHHHH
Q 007951 265 VHQDVDGRATNVALGWSVALGSPFTF-ATTLEQEYRSDIFGERGILLGAVHG-IVESLFRRFTENGMNEDLAYKNTVE 340 (583)
Q Consensus 265 v~qd~sgeale~a~ala~aIG~~~vi-eTtf~eE~~sDlfgeqtvLsG~~pA-lieAl~d~~Ve~Gl~~e~A~~~~~q 340 (583)
.. +.+.++.++.+++.+|....+ --..-.=...++.. . .++++.-+ +.|+ +..+.++|++++..+...-.
T Consensus 463 -gG--~~~~~~~~~plL~~lg~~i~~~~g~~G~a~~~KL~n-N-~l~~~~~aa~aEa-l~la~k~Gld~~~l~evl~~ 534 (1378)
T PLN02858 463 -SG--TDEALKSAGSVLSALSEKLYVIKGGCGAGSGVKMVN-Q-LLAGVHIASAAEA-MAFGARLGLNTRKLFDIISN 534 (1378)
T ss_pred -EC--CHHHHHHHHHHHHHHhCcEEEeCCCCCHHHHHHHHH-H-HHHHHHHHHHHHH-HHHHHHcCCCHHHHHHHHHh
Confidence 33 467899999999999964211 10111111111111 1 12222222 3333 34557899999988775433
No 75
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=98.92 E-value=2.9e-09 Score=111.77 Aligned_cols=111 Identities=19% Similarity=0.091 Sum_probs=93.5
Q ss_pred hhHHHHHHHHHHHHHHHHhCCChhhhhhhhHHHHhhhcchhhhhccchhhhhhcchhhhccccccccchhHHH---HHHH
Q 007951 450 TAGVYAALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYIL---TQQA 526 (583)
Q Consensus 450 ~~g~~~~~~~a~~~~l~~~gh~~se~~ne~~~e~~~sl~p~~~~~g~~~m~~~cs~ta~~g~~~w~~~f~~~~---~~~~ 526 (583)
..|...+.+.+.+|.|.+.|++|..+++|.+.|..-+ ..|+.+.|+++|.++||+||+||++.|.+.|++.+ +++.
T Consensus 185 l~Gs~pa~v~~~~ealv~~G~~~e~A~~~~~~~~~g~-~~l~~e~g~~~l~~~Vsstaeyg~~~~~~~~~~~~~~~~~~~ 263 (314)
T TIGR00465 185 LCGGLTALIKAGFDTLVEAGYQPELAYFETVHELKLI-VDLIYEGGITGMRDRISNTAEYGALTRRRIIKEELKPEMQKI 263 (314)
T ss_pred HHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH-HHHHHHhcHHHHHHHcCCHHHcCcchhHHHhhHHHHHHHHHH
Confidence 4788888999999999999999999999999988444 49999999999999999999999999999999988 8899
Q ss_pred HhhhccCCc-------------cchhhHHhhhcChHHHHHHHHhccCC
Q 007951 527 LVAVDNDAP-------------INGDLISNFLSDPVHGAIEVCAQLRP 561 (583)
Q Consensus 527 ~~~~~~g~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (583)
|..|++|+. ..+.+.+..++||++..=+.-..++|
T Consensus 264 ~~~i~~g~fa~~~~~~~~~~~~~~~~~~~~~~~~~~e~vg~~lr~~~~ 311 (314)
T TIGR00465 264 LKEIQNGEFAKEWALENEAGKPAFNTARKYESEHEIEKVGKELRAMVP 311 (314)
T ss_pred HHHhCCChhhhhhhhhccCCcHHHHHHHHHHhCCcHHHHHHHHHHhcc
Confidence 999999943 34456667899999865444444433
No 76
>PRK06444 prephenate dehydrogenase; Provisional
Probab=98.91 E-value=3e-08 Score=97.88 Aligned_cols=127 Identities=16% Similarity=0.065 Sum_probs=95.5
Q ss_pred CEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccchH
Q 007951 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (583)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~a 190 (583)
+||+|||. |.||..++.-++++ |+.|. +++||+||||+|+..
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~------g~~v~-------------------------------~~~~DlVilavPv~~ 43 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDN------GLGVY-------------------------------IKKADHAFLSVPIDA 43 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhC------CCEEE-------------------------------ECCCCEEEEeCCHHH
Confidence 58999998 99999999999998 98763 247899999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEecCchhhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEeecCCCC
Q 007951 191 QADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVD 270 (583)
Q Consensus 191 ~~~Vl~eI~~~Lk~GaiL~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv~qd~s 270 (583)
..++++++. .+|+|+.+++....+ ...+||..|| +.|+. .++. |-..+++++ ..+.+
T Consensus 44 ~~~~i~~~~------~~v~Dv~SvK~~i~~-------~~~~~vg~HP-MfGp~------~a~~--~lf~~~iv~-~~~~~ 100 (197)
T PRK06444 44 ALNYIESYD------NNFVEISSVKWPFKK-------YSGKIVSIHP-LFGPM------SYND--GVHRTVIFI-NDISR 100 (197)
T ss_pred HHHHHHHhC------CeEEeccccCHHHHH-------hcCCEEecCC-CCCCC------cCcc--cccceEEEE-CCCCC
Confidence 999999875 278899999854322 1357999999 44533 1110 101255444 55667
Q ss_pred HHHHHHHHHHHHHhCCCcccccchhhhhhhh
Q 007951 271 GRATNVALGWSVALGSPFTFATTLEQEYRSD 301 (583)
Q Consensus 271 geale~a~ala~aIG~~~vieTtf~eE~~sD 301 (583)
+++++.++++++ |+ +++++|.++||+.-
T Consensus 101 ~~~~~~~~~l~~--G~-~~~~~t~eeHD~~~ 128 (197)
T PRK06444 101 DNYLNEINEMFR--GY-HFVEMTADEHDLLM 128 (197)
T ss_pred HHHHHHHHHHHc--CC-EEEEeCHHHHHHHH
Confidence 788899999998 74 78999999997653
No 77
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=98.91 E-value=1.6e-07 Score=102.02 Aligned_cols=201 Identities=16% Similarity=0.108 Sum_probs=117.9
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhh---------------
Q 007951 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET--------------- 175 (583)
Q Consensus 111 ikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Ea--------------- 175 (583)
++||+|||+|.||.++|.+|.+. |++|++.+++ +...+. ...|..+. .....++.
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~------G~~V~~~D~~-~~~v~~-l~~g~~~~--~e~~l~~~l~~~~~~g~l~~~~~ 72 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASR------QKQVIGVDIN-QHAVDT-INRGEIHI--VEPDLDMVVKTAVEGGYLRATTT 72 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhC------CCEEEEEeCC-HHHHHH-HHCCCCCc--CCCCHHHHHHHHhhcCceeeecc
Confidence 48999999999999999999998 9998766554 333333 33343210 00112222
Q ss_pred hccCCeEEEeccc----------hHHHHHHHHHHhcCCCCcEEEEecCchhh---h----hhccccc--CC------CCc
Q 007951 176 ISGSDLVLLLISD----------AAQADNYEKIFSCMKPNSILGLSHGFLLG---H----LQSMGLD--FP------KNI 230 (583)
Q Consensus 176 v~~ADIVILavpd----------~a~~~Vl~eI~~~Lk~GaiL~~a~G~~i~---~----ie~~~i~--~p------~dv 230 (583)
+++||+||+|+|+ ..+..+++.|.+++++|++|++.+.+... . +.+.... .| .++
T Consensus 73 ~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~~~~~~~~~~~g~~~~f 152 (415)
T PRK11064 73 PEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEARPDLTFPQQAGEQADI 152 (415)
T ss_pred cccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHhccCCcccccccCCCCe
Confidence 3479999999997 46677888899999999998876554321 1 1111111 11 122
Q ss_pred cEEEecc--CCCchhhHHhHhccccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhh
Q 007951 231 GVIAVCP--KGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGI 308 (583)
Q Consensus 231 ~VI~v~P--ngPg~~vR~lf~~G~e~~G~Gv~aliAv~qd~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtv 308 (583)
.+...| -.||..+.+... .+-++. . .+.+..+.++.++..++...++.++. .+-+.-.+-+.+
T Consensus 153 -~v~~~PE~~~~G~~~~~~~~---------~~~vvg-G--~~~~~~~~~~~ly~~~~~~~~~~~~~-~~Ae~~Kl~~N~- 217 (415)
T PRK11064 153 -NIAYCPERVLPGQVMVELIK---------NDRVIG-G--MTPVCSARASELYKIFLEGECVVTNS-RTAEMCKLTENS- 217 (415)
T ss_pred -EEEECCCccCCCChhhhhcC---------CCEEEE-e--CCHHHHHHHHHHHHHhcCCCeeeCCH-HHHHHHHHHHHH-
Confidence 244667 455655432211 233332 2 36788999999999998642332322 222222222222
Q ss_pred HhhHHHHHHHHHHHHHHHcCCCHHHHHH
Q 007951 309 LLGAVHGIVESLFRRFTENGMNEDLAYK 336 (583)
Q Consensus 309 LsG~~pAlieAl~d~~Ve~Gl~~e~A~~ 336 (583)
+...--+++.-+...+.+.|+++++..+
T Consensus 218 ~~a~~ia~~nE~~~lae~~GiD~~~v~~ 245 (415)
T PRK11064 218 FRDVNIAFANELSLICADQGINVWELIR 245 (415)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 2233333666667777788888876554
No 78
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=98.90 E-value=6.1e-08 Score=107.76 Aligned_cols=153 Identities=12% Similarity=0.148 Sum_probs=109.7
Q ss_pred CCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHH-----------HHHcCceecC---------CCc
Q 007951 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEEN---------GTL 169 (583)
Q Consensus 110 gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~-----------A~~~G~~~~d---------~t~ 169 (583)
.+++|+|||.|.||..||.++.++ |++|++.+++.+. .+. ..+.|..... ..+
T Consensus 4 ~~~kV~VIGaG~MG~gIA~~la~a------G~~V~l~d~~~e~-l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~ 76 (503)
T TIGR02279 4 NVVTVAVIGAGAMGAGIAQVAASA------GHQVLLYDIRAEA-LARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPV 76 (503)
T ss_pred CccEEEEECcCHHHHHHHHHHHhC------CCeEEEEeCCHHH-HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEe
Confidence 458999999999999999999998 9999888776443 222 2334421000 014
Q ss_pred CCHhhhhccCCeEEEeccchHHH--HHHHHHHhcCCCCcEEE-EecCchhhhhhcccccCCCCccEEEeccCCCchhhHH
Q 007951 170 GDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRR 246 (583)
Q Consensus 170 ~d~~Eav~~ADIVILavpd~a~~--~Vl~eI~~~Lk~GaiL~-~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~ 246 (583)
.++++ +.+||+||.++|..... .++.++...++++++|. .++++.+..+.. ......+++..|.=-|.+.+
T Consensus 77 ~~~~~-l~~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i~~iA~---~~~~p~r~~G~HFf~Papv~-- 150 (503)
T TIGR02279 77 TDLHA-LADAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSITAIAA---GLARPERVAGLHFFNPAPVM-- 150 (503)
T ss_pred CCHHH-hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHH---hcCcccceEEEeccCccccC--
Confidence 46654 57999999999976553 47778888888988764 667777665443 23334578999997778773
Q ss_pred hHhccccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 007951 247 LYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (583)
Q Consensus 247 lf~~G~e~~G~Gv~aliAv~qd~sgeale~a~ala~aIG~~ 287 (583)
...- +..+...+++.++.+..+++.+|..
T Consensus 151 -----------~LvE-vv~g~~Ts~e~~~~~~~l~~~lgk~ 179 (503)
T TIGR02279 151 -----------ALVE-VVSGLATAAEVAEQLYETALAWGKQ 179 (503)
T ss_pred -----------ceEE-EeCCCCCCHHHHHHHHHHHHHcCCe
Confidence 2333 4557788999999999999999975
No 79
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=98.89 E-value=7.5e-08 Score=98.08 Aligned_cols=153 Identities=20% Similarity=0.208 Sum_probs=97.4
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCcee-cC------CCcCCHhhhhccCCeEEE
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE-EN------GTLGDIYETISGSDLVLL 184 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~-~d------~t~~d~~Eav~~ADIVIL 184 (583)
|+|+|||.|+||..+|..|.++ |++|.+..|..+ ..+...+.|+.. .+ ..+.+..++ +.+|+||+
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~------g~~V~~~~r~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vil 72 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQA------GHDVTLVARRGA-HLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVIL 72 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCeEEEEECChH-HHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEE
Confidence 5899999999999999999998 888887776433 344455556632 00 112344444 89999999
Q ss_pred eccchHHHHHHHHHHhcCCCCcE-EEEecCch-hhhhhcccccCCCCccEE------EeccCCCchhhHHhHhccccccC
Q 007951 185 LISDAAQADNYEKIFSCMKPNSI-LGLSHGFL-LGHLQSMGLDFPKNIGVI------AVCPKGMGPSVRRLYVQGKEING 256 (583)
Q Consensus 185 avpd~a~~~Vl~eI~~~Lk~Gai-L~~a~G~~-i~~ie~~~i~~p~dv~VI------~v~PngPg~~vR~lf~~G~e~~G 256 (583)
++|+....++++.+.+++.++++ |+...|+. ...+.. .+++. .++ .+...+|+... ..|
T Consensus 73 a~k~~~~~~~~~~l~~~l~~~~~iv~~~nG~~~~~~l~~---~~~~~-~i~~~~~~~~~~~~~p~~v~---------~~~ 139 (304)
T PRK06522 73 AVKAYQLPAALPSLAPLLGPDTPVLFLQNGVGHLEELAA---YIGPE-RVLGGVVTHAAELEGPGVVR---------HTG 139 (304)
T ss_pred ecccccHHHHHHHHhhhcCCCCEEEEecCCCCcHHHHHH---hcCcc-cEEEEEEEEeeEecCCCEEE---------EcC
Confidence 99999999999999999988764 56778875 333333 23322 222 22333455442 113
Q ss_pred CCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 007951 257 AGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (583)
Q Consensus 257 ~Gv~aliAv~qd~sgeale~a~ala~aIG~~ 287 (583)
.|... +...++.. +..+.+.+++...|..
T Consensus 140 ~g~~~-ig~~~~~~-~~~~~l~~~l~~~~~~ 168 (304)
T PRK06522 140 GGRLK-IGEPDGES-AAAEALADLLNAAGLD 168 (304)
T ss_pred CCCEE-EeCCCCCc-HHHHHHHHHHHhcCCC
Confidence 45444 44333322 3456666777777764
No 80
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.89 E-value=4.4e-08 Score=101.23 Aligned_cols=152 Identities=15% Similarity=0.177 Sum_probs=109.3
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHH-----------HHHcCceecC---------CCcC
Q 007951 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEEN---------GTLG 170 (583)
Q Consensus 111 ikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~-----------A~~~G~~~~d---------~t~~ 170 (583)
+++|||||.|.||..+|..+..+ |++|++.++..+. .+. +.+.|..... ....
T Consensus 5 ~~~V~ViGaG~mG~~iA~~~a~~------G~~V~l~d~~~~~-~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~ 77 (286)
T PRK07819 5 IQRVGVVGAGQMGAGIAEVCARA------GVDVLVFETTEEL-ATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTT 77 (286)
T ss_pred ccEEEEEcccHHHHHHHHHHHhC------CCEEEEEECCHHH-HHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeC
Confidence 47899999999999999999988 9998887766432 222 3344432100 0134
Q ss_pred CHhhhhccCCeEEEeccchHHH--HHHHHHHhcC-CCCcEEE-EecCchhhhhhcccccCCCCccEEEeccCCCchhhHH
Q 007951 171 DIYETISGSDLVLLLISDAAQA--DNYEKIFSCM-KPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRR 246 (583)
Q Consensus 171 d~~Eav~~ADIVILavpd~a~~--~Vl~eI~~~L-k~GaiL~-~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~ 246 (583)
+. +.+++||+||-++|.+... +++.++.... +++++|. -++++.+..+.. .....-+++.+|+=.|.+.+
T Consensus 78 ~~-~~~~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la~---~~~~~~r~~g~hf~~P~~~~-- 151 (286)
T PRK07819 78 DL-GDFADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLAA---ATKRPGRVLGLHFFNPVPVL-- 151 (286)
T ss_pred CH-HHhCCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHh---hcCCCccEEEEecCCCcccC--
Confidence 55 5689999999999988774 4777888877 8899875 556666665544 22223468999998887773
Q ss_pred hHhccccccCCCceEEEeecCCCCHHHHHHHHHHHH-HhCCC
Q 007951 247 LYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSV-ALGSP 287 (583)
Q Consensus 247 lf~~G~e~~G~Gv~aliAv~qd~sgeale~a~ala~-aIG~~ 287 (583)
+..- +.++...+.+.++.+..++. .+|..
T Consensus 152 -----------~lvE-lv~~~~T~~~~~~~~~~~~~~~lgk~ 181 (286)
T PRK07819 152 -----------PLVE-LVPTLVTSEATVARAEEFASDVLGKQ 181 (286)
T ss_pred -----------ceEE-EeCCCCCCHHHHHHHHHHHHHhCCCC
Confidence 2333 56688899999999999988 59964
No 81
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=98.86 E-value=5.6e-09 Score=108.40 Aligned_cols=112 Identities=18% Similarity=0.132 Sum_probs=91.9
Q ss_pred hHHHHHHHHHHHHHHHHhCCChhhhhhhhHHHHhhhcchhhhhccchhhhhhcchhhhccccccccchhHHH----HHHH
Q 007951 451 AGVYAALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYIL----TQQA 526 (583)
Q Consensus 451 ~g~~~~~~~a~~~~l~~~gh~~se~~ne~~~e~~~sl~p~~~~~g~~~m~~~cs~ta~~g~~~w~~~f~~~~----~~~~ 526 (583)
.|-+.+++.|++|+|.+.|++|.-++.|.+.| +..+.+||.+.|+..|+++||+||++|.+.|.||--... +++.
T Consensus 201 cGgl~~li~agfetLvEaGy~PE~AyfE~lhE-~klIvdLiyegGi~~M~~siSnTAeyG~~~~gprii~~~~k~~mk~~ 279 (338)
T COG0059 201 CGGLQALIKAGFETLVEAGYQPELAYFECLHE-LKLIVDLIYEGGITNMRYSISNTAEYGDYTRGPRIIDAETKEEMKKV 279 (338)
T ss_pred hhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH-HHHHHHHHHHhhHHHHHHhcCCHHHhcccccCceeecHHhHHHHHHH
Confidence 45555678899999999999999999999984 678889999999999999999999999999999766555 6777
Q ss_pred HhhhccCCc-------------cchhhHHhhhcChHHHHHHHHhccCCcc
Q 007951 527 LVAVDNDAP-------------INGDLISNFLSDPVHGAIEVCAQLRPTV 563 (583)
Q Consensus 527 ~~~~~~g~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (583)
+..+.+|+- ....+.+.-++||++.+=+.-.++.|-+
T Consensus 280 l~dIq~G~Fak~~~~e~~~g~p~l~~~r~~~~~~~iEkvg~~lrk~m~~~ 329 (338)
T COG0059 280 LKDIQSGEFAKEWILENQAGRPKLEALREETAEHEIEKVGKELRKMMPWE 329 (338)
T ss_pred HHHHhcChhHHHHHHhhhcCCHHHHHHHHHhhcChHHHHHHHHHHhcchh
Confidence 778888743 4455666777888888777666666654
No 82
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=98.85 E-value=1.1e-08 Score=96.58 Aligned_cols=95 Identities=23% Similarity=0.346 Sum_probs=69.5
Q ss_pred EEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceec---C-------CCcCCHhhhhccCCeE
Q 007951 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE---N-------GTLGDIYETISGSDLV 182 (583)
Q Consensus 113 kIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~---d-------~t~~d~~Eav~~ADIV 182 (583)
||+|||.|++|.++|.-|.++ |++|.++.++.+ ..+.-.+.+.... + ....|+++++++||+|
T Consensus 1 KI~ViGaG~~G~AlA~~la~~------g~~V~l~~~~~~-~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~I 73 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADN------GHEVTLWGRDEE-QIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADII 73 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHC------TEEEEEETSCHH-HHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEE
T ss_pred CEEEECcCHHHHHHHHHHHHc------CCEEEEEeccHH-HHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEE
Confidence 799999999999999999999 999888777643 3333333222100 0 0146788999999999
Q ss_pred EEeccchHHHHHHHHHHhcCCCCcEEE-EecCc
Q 007951 183 LLLISDAAQADNYEKIFSCMKPNSILG-LSHGF 214 (583)
Q Consensus 183 ILavpd~a~~~Vl~eI~~~Lk~GaiL~-~a~G~ 214 (583)
++++|.+.+.+++++|.++++++++|+ ...||
T Consensus 74 iiavPs~~~~~~~~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 74 IIAVPSQAHREVLEQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp EE-S-GGGHHHHHHHHTTTSHTT-EEEETS-SE
T ss_pred EecccHHHHHHHHHHHhhccCCCCEEEEecCCc
Confidence 999999999999999999999998755 55677
No 83
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.84 E-value=2.4e-07 Score=96.55 Aligned_cols=97 Identities=22% Similarity=0.286 Sum_probs=70.4
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHc--Cce------ecC--CCcCCHhhhh-ccCC
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--GFT------EEN--GTLGDIYETI-SGSD 180 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~--G~~------~~d--~t~~d~~Eav-~~AD 180 (583)
|||+|||.|+||.++|..|.++ |++|.+..|..+ ..+.-.+. +.. ... ....+..+++ ..+|
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~------g~~V~l~~r~~~-~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~D 73 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSK------KISVNLWGRNHT-TFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNAT 73 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHC------CCeEEEEecCHH-HHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCC
Confidence 5799999999999999999998 998877766432 22222221 111 000 0124555666 5899
Q ss_pred eEEEeccchHHHHHHHHHHh-cCCCCc-EEEEecCch
Q 007951 181 LVLLLISDAAQADNYEKIFS-CMKPNS-ILGLSHGFL 215 (583)
Q Consensus 181 IVILavpd~a~~~Vl~eI~~-~Lk~Ga-iL~~a~G~~ 215 (583)
+||++||+....++++++.+ ++++++ +|+...|+.
T Consensus 74 liiiavks~~~~~~l~~l~~~~l~~~~~vv~~~nGi~ 110 (326)
T PRK14620 74 CIILAVPTQQLRTICQQLQDCHLKKNTPILICSKGIE 110 (326)
T ss_pred EEEEEeCHHHHHHHHHHHHHhcCCCCCEEEEEEcCee
Confidence 99999999999999999998 888776 567888883
No 84
>PLN02858 fructose-bisphosphate aldolase
Probab=98.84 E-value=9.8e-08 Score=116.76 Aligned_cols=200 Identities=14% Similarity=0.064 Sum_probs=124.1
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccchHH
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~a~ 191 (583)
++|||||+|+||.+||.||.+. |++|.++++..+ ..+...+.|... +.++.|++++||+||+++|+..+
T Consensus 5 ~~IGfIGLG~MG~~mA~~L~~~------G~~v~v~dr~~~-~~~~l~~~Ga~~----~~s~~e~a~~advVi~~l~~~~~ 73 (1378)
T PLN02858 5 GVVGFVGLDSLSFELASSLLRS------GFKVQAFEISTP-LMEKFCELGGHR----CDSPAEAAKDAAALVVVLSHPDQ 73 (1378)
T ss_pred CeEEEEchhHHHHHHHHHHHHC------CCeEEEEcCCHH-HHHHHHHcCCee----cCCHHHHHhcCCEEEEEcCChHH
Confidence 7899999999999999999998 999988877644 345556678765 67899999999999999998776
Q ss_pred H-HHH---HHHHhcCCCCcEEEEecCchhh---hhhcccccCCCC--ccEEEeccCCCchhhHHhHhccccccCCCceEE
Q 007951 192 A-DNY---EKIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKN--IGVIAVCPKGMGPSVRRLYVQGKEINGAGINSS 262 (583)
Q Consensus 192 ~-~Vl---~eI~~~Lk~GaiL~~a~G~~i~---~ie~~~i~~p~d--v~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~al 262 (583)
. +|+ +.+.+.+++|+++++.+-+... .+.. . .-..+ +.+| =+|-.-+.. .-+ .|--.+
T Consensus 74 v~~V~~g~~g~~~~l~~g~iivd~STi~p~~~~~la~-~-l~~~g~~~~~l-DaPVsGg~~---~A~-------~G~L~i 140 (1378)
T PLN02858 74 VDDVFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEK-K-LTERKEQIFLV-DAYVSKGMS---DLL-------NGKLMI 140 (1378)
T ss_pred HHHHHhchhhHHhcCCCcCEEEECCCCCHHHHHHHHH-H-HHhcCCceEEE-EccCcCCHH---HHh-------cCCeEE
Confidence 4 576 3588889999999988765422 2211 0 11234 5555 455222221 111 243332
Q ss_pred EeecCCCCHHHHHHHHHHHHHhCCCcccc-cchhhhhhhhhhhhhhhHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 007951 263 FAVHQDVDGRATNVALGWSVALGSPFTFA-TTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVE 340 (583)
Q Consensus 263 iAv~qd~sgeale~a~ala~aIG~~~vie-Ttf~eE~~sDlfgeqtvLsG~~pAlieAl~d~~Ve~Gl~~e~A~~~~~q 340 (583)
++ .. +.+..+.++.++..+|...... -..-.=....+..- .++.+.+.++.|++ -.+.+.|++++..+.....
T Consensus 141 mv-GG--~~~~~~~~~p~l~~~g~~i~~~~G~~G~g~~~KL~nN-~l~~~~~~a~aEAl-~la~~~Gld~~~l~~vl~~ 214 (1378)
T PLN02858 141 IA-SG--RSDAITRAQPFLSAMCQKLYTFEGEIGAGSKVKMVNE-LLEGIHLVASAEAM-ALGVRAGIHPWIIYDIISN 214 (1378)
T ss_pred EE-cC--CHHHHHHHHHHHHHhcCceEEecCCCCHhHHHHHHHH-HHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHhc
Confidence 33 33 5678899999999999641100 00011111111111 11122222334443 2467899999988875433
No 85
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=98.83 E-value=7.4e-08 Score=100.14 Aligned_cols=149 Identities=20% Similarity=0.192 Sum_probs=104.0
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccchHH
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~a~ 191 (583)
++|||||+|+||.+|+.||.++ |+.|+|++|.-++ .+..++.|... ..++.|++++||+||.++|+..+
T Consensus 36 ~~iGFIGLG~MG~~M~~nLik~------G~kVtV~dr~~~k-~~~f~~~Ga~v----~~sPaeVae~sDvvitmv~~~~~ 104 (327)
T KOG0409|consen 36 TRIGFIGLGNMGSAMVSNLIKA------GYKVTVYDRTKDK-CKEFQEAGARV----ANSPAEVAEDSDVVITMVPNPKD 104 (327)
T ss_pred ceeeEEeeccchHHHHHHHHHc------CCEEEEEeCcHHH-HHHHHHhchhh----hCCHHHHHhhcCEEEEEcCChHh
Confidence 7899999999999999999999 9999999887554 56667778876 67899999999999999998777
Q ss_pred H-HHHHH---HHhcCCCCcEE-EEecCchhh---hhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEE
Q 007951 192 A-DNYEK---IFSCMKPNSIL-GLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (583)
Q Consensus 192 ~-~Vl~e---I~~~Lk~GaiL-~~a~G~~i~---~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~ali 263 (583)
+ +++.. +...+++|... ++++-+... .+.+ .+. ..+..+| =+| -.|-. ... -.|.-.++
T Consensus 105 v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~-~i~-~~~~~~v-DAP-VSGg~-----~~A----~~G~Ltim 171 (327)
T KOG0409|consen 105 VKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAK-AIS-NKGGRFV-DAP-VSGGV-----KGA----EEGTLTIM 171 (327)
T ss_pred hHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHH-HHH-hCCCeEE-ecc-ccCCc-----hhh----hcCeEEEE
Confidence 5 56652 66777788876 677655421 2222 111 2344454 345 11111 011 13555545
Q ss_pred eecCCCCHHHHHHHHHHHHHhCCC
Q 007951 264 AVHQDVDGRATNVALGWSVALGSP 287 (583)
Q Consensus 264 Av~qd~sgeale~a~ala~aIG~~ 287 (583)
+ . -+....+.+..+++.+|..
T Consensus 172 a-g--Gde~~~~~~~~~~~~mGk~ 192 (327)
T KOG0409|consen 172 A-G--GDEALFEAASPVFKLMGKN 192 (327)
T ss_pred e-c--CcHHHHHHHHHHHHHhcce
Confidence 5 3 3567788899999999964
No 86
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=98.79 E-value=3.4e-07 Score=93.48 Aligned_cols=225 Identities=14% Similarity=0.202 Sum_probs=154.9
Q ss_pred CEEEEEccchh--------------------HHHHHHHHHHhhhhhcCCceEEEEecC----CcccHHHHHHcCceecCC
Q 007951 112 NQIGVIGWGSQ--------------------GPAQAQNLRDSLAEAKSDIVVKVGLRK----GSRSFAEARAAGFTEENG 167 (583)
Q Consensus 112 kkIgIIG~G~m--------------------G~A~A~nLrdsl~~~g~G~~ViVg~r~----~s~s~~~A~~~G~~~~d~ 167 (583)
+||+|.|.||| |..||...... |++|+....+ +...|++-+..|+..
T Consensus 2 mkv~vygagnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeA------GHDVVLaePn~d~~dd~~w~~vedAGV~v--- 72 (340)
T COG4007 2 MKVAVYGAGNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEA------GHDVVLAEPNRDIMDDEHWKRVEDAGVEV--- 72 (340)
T ss_pred ceEEEEcCCccchhHHhcCChhhhCCCCCCCchHHHHHHHHc------CCcEEeecCCccccCHHHHHHHHhcCcEE---
Confidence 78899999987 44566666555 8898887653 345699999999986
Q ss_pred CcCCHhhhhccCCeEEEeccch-HHHHHHHHHHhcCCCCcEEEEe---cCchhhhhhcccccC-CCCccEEEeccC-CCc
Q 007951 168 TLGDIYETISGSDLVLLLISDA-AQADNYEKIFSCMKPNSILGLS---HGFLLGHLQSMGLDF-PKNIGVIAVCPK-GMG 241 (583)
Q Consensus 168 t~~d~~Eav~~ADIVILavpd~-a~~~Vl~eI~~~Lk~GaiL~~a---~G~~i~~ie~~~i~~-p~dv~VI~v~Pn-gPg 241 (583)
+.|..++++.+.+.+|-||=. ....+.++|.+++..|++|.-. +.+-+.+.-+..+.. ++|+-|-..||- -||
T Consensus 73 -v~dD~eaa~~~Ei~VLFTPFGk~T~~Iarei~~hvpEgAVicnTCT~sp~vLy~~LE~~Lr~kR~dVGvssmHPAgvPG 151 (340)
T COG4007 73 -VSDDAEAAEHGEIHVLFTPFGKATFGIAREILEHVPEGAVICNTCTVSPVVLYYSLEGELRTKREDVGVSSMHPAGVPG 151 (340)
T ss_pred -ecCchhhhhcceEEEEecccchhhHHHHHHHHhhCcCCcEecccccCchhHHHHHhhhhhcCchhhcCccccCCCCCCC
Confidence 677889999999999999977 6678999999999999998633 333333221223333 478889999994 477
Q ss_pred hhhHHhHhccccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC-cccccchhhhhhhhhhhhhhhHhhHHHH--HHH
Q 007951 242 PSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP-FTFATTLEQEYRSDIFGERGILLGAVHG--IVE 318 (583)
Q Consensus 242 ~~vR~lf~~G~e~~G~Gv~aliAv~qd~sgeale~a~ala~aIG~~-~vieTtf~eE~~sDlfgeqtvLsG~~pA--lie 318 (583)
+...+.|.-+ |++-.. -.-++.+..+++..++++.|.. +++. .|+....+- +|++.. .+.
T Consensus 152 tp~h~~yvia----gr~t~g----~elATeEQi~r~velaes~Gk~~yv~p--------adv~s~VaD-mg~lvtav~l~ 214 (340)
T COG4007 152 TPQHGHYVIA----GRSTEG----KELATEEQIERCVELAESTGKEVYVLP--------ADVVSAVAD-MGVLVTAVALS 214 (340)
T ss_pred CCCCceEEEe----ccCCCc----eeeccHHHHHHHHHHHHhcCCceEecC--------HHHHHHhhh-hHHHHHHHHHH
Confidence 7755555543 222111 1235789999999999999964 2222 233333332 233332 333
Q ss_pred HHHH---HHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhcCc
Q 007951 319 SLFR---RFT-ENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSG 364 (583)
Q Consensus 319 Al~d---~~V-e~Gl~~e~A~~~~~q~l~Glia~li~e~G~~~m~d~vS~ 364 (583)
+..| .+. -.|-|.|+--+....++ +.++.++-.+|+..|...+..
T Consensus 215 gvldyy~Vg~qIi~AP~eMIekQilmtL-qTmAsLvetsGi~g~~~~~n~ 263 (340)
T COG4007 215 GVLDYYYVGTQIIGAPKEMIEKQILMTL-QTMASLVETSGIDGMLKALNP 263 (340)
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHH-HHHHHHHHhcchhHHHHhcCH
Confidence 3333 333 46999999888777776 358999999999999887764
No 87
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=98.79 E-value=3.9e-07 Score=93.24 Aligned_cols=96 Identities=19% Similarity=0.230 Sum_probs=73.5
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCC---------CcCCHhhhhccCCeE
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENG---------TLGDIYETISGSDLV 182 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~---------t~~d~~Eav~~ADIV 182 (583)
|||+|||.|.||..+|..|.++ |++|.+..| . +..+...+.|+..... ...+..++++.+|+|
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~------g~~V~~~~r-~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v 72 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEA------GRDVTFLVR-P-KRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLV 72 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHC------CCceEEEec-H-HHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEE
Confidence 5899999999999999999998 888877776 3 3344455566542110 123455666899999
Q ss_pred EEeccchHHHHHHHHHHhcCCCCcEE-EEecCch
Q 007951 183 LLLISDAAQADNYEKIFSCMKPNSIL-GLSHGFL 215 (583)
Q Consensus 183 ILavpd~a~~~Vl~eI~~~Lk~GaiL-~~a~G~~ 215 (583)
|+++|..+..++++++.++++++++| +..-|+.
T Consensus 73 ilavk~~~~~~~~~~l~~~~~~~~~ii~~~nG~~ 106 (305)
T PRK12921 73 ILAVKAYQLDAAIPDLKPLVGEDTVIIPLQNGIG 106 (305)
T ss_pred EEEecccCHHHHHHHHHhhcCCCCEEEEeeCCCC
Confidence 99999999999999999999888765 4667875
No 88
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=98.74 E-value=2.8e-07 Score=89.25 Aligned_cols=150 Identities=15% Similarity=0.171 Sum_probs=99.9
Q ss_pred EEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHH-----------HHHcCcee---------cCCCcCCH
Q 007951 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTE---------ENGTLGDI 172 (583)
Q Consensus 113 kIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~-----------A~~~G~~~---------~d~t~~d~ 172 (583)
||+|||.|.||.++|.-+..+ |++|++.+.+.+ ..+. ..+.|-.. .-....++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~------G~~V~l~d~~~~-~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl 73 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA------GYEVTLYDRSPE-ALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDL 73 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT------TSEEEEE-SSHH-HHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSG
T ss_pred CEEEEcCCHHHHHHHHHHHhC------CCcEEEEECChH-HHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCH
Confidence 799999999999999999998 999988776533 1211 11112100 00014677
Q ss_pred hhhhccCCeEEEeccchHHH--HHHHHHHhcCCCCcEE-EEecCchhhhhhcccccCCCCccEEEeccCCCchhhHHhHh
Q 007951 173 YETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYV 249 (583)
Q Consensus 173 ~Eav~~ADIVILavpd~a~~--~Vl~eI~~~Lk~GaiL-~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~ 249 (583)
++++ +||+||=++|...-. +++.++.+.+.++++| +-++++.+..+.. ..+..-+++..|+=.|.+.++
T Consensus 74 ~~~~-~adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~la~---~~~~p~R~ig~Hf~~P~~~~~---- 145 (180)
T PF02737_consen 74 EEAV-DADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSISELAA---ALSRPERFIGMHFFNPPHLMP---- 145 (180)
T ss_dssp GGGC-TESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHHHT---TSSTGGGEEEEEE-SSTTT------
T ss_pred HHHh-hhheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHHHh---ccCcCceEEEEecccccccCc----
Confidence 7777 999999999976653 5999999999999987 4778888887765 333445799999977776521
Q ss_pred ccccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 007951 250 QGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (583)
Q Consensus 250 ~G~e~~G~Gv~aliAv~qd~sgeale~a~ala~aIG~~ 287 (583)
.-= +.++...+.+.++.+..++..+|..
T Consensus 146 ---------lVE-vv~~~~T~~~~~~~~~~~~~~~gk~ 173 (180)
T PF02737_consen 146 ---------LVE-VVPGPKTSPETVDRVRALLRSLGKT 173 (180)
T ss_dssp ---------EEE-EEE-TTS-HHHHHHHHHHHHHTT-E
T ss_pred ---------eEE-EeCCCCCCHHHHHHHHHHHHHCCCE
Confidence 112 5568889999999999999999863
No 89
>PRK13243 glyoxylate reductase; Reviewed
Probab=98.73 E-value=3.7e-08 Score=104.04 Aligned_cols=136 Identities=21% Similarity=0.261 Sum_probs=92.8
Q ss_pred hhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
..|.| ++|||||+|+||.++|+.|+.. |.+|+++++.... ..+...|+. ..+.+|++++||+|+++
T Consensus 146 ~~L~g-ktvgIiG~G~IG~~vA~~l~~~------G~~V~~~d~~~~~--~~~~~~~~~-----~~~l~ell~~aDiV~l~ 211 (333)
T PRK13243 146 YDVYG-KTIGIIGFGRIGQAVARRAKGF------GMRILYYSRTRKP--EAEKELGAE-----YRPLEELLRESDFVSLH 211 (333)
T ss_pred cCCCC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEECCCCCh--hhHHHcCCE-----ecCHHHHHhhCCEEEEe
Confidence 46899 9999999999999999999987 8888766654322 233445554 35789999999999999
Q ss_pred ccchHH-HHHHH-HHHhcCCCCcEEEEe-cCch------hhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccC
Q 007951 186 ISDAAQ-ADNYE-KIFSCMKPNSILGLS-HGFL------LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEING 256 (583)
Q Consensus 186 vpd~a~-~~Vl~-eI~~~Lk~GaiL~~a-~G~~------i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G 256 (583)
+|.... ..++. +....||+|++|+.+ -|-. +..+++..+. ....||....|. |.+. ++.-
T Consensus 212 lP~t~~T~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~-gAaLDV~~~EP~-~~~p---L~~~------ 280 (333)
T PRK13243 212 VPLTKETYHMINEERLKLMKPTAILVNTARGKVVDTKALVKALKEGWIA-GAGLDVFEEEPY-YNEE---LFSL------ 280 (333)
T ss_pred CCCChHHhhccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHHHcCCeE-EEEeccCCCCCC-CCch---hhcC------
Confidence 997654 45664 688999999998754 4421 2233332221 234677777774 2222 2321
Q ss_pred CCceEEEeecCC
Q 007951 257 AGINSSFAVHQD 268 (583)
Q Consensus 257 ~Gv~aliAv~qd 268 (583)
-|.+++||-.
T Consensus 281 --~nvilTPHia 290 (333)
T PRK13243 281 --KNVVLAPHIG 290 (333)
T ss_pred --CCEEECCcCC
Confidence 3677888874
No 90
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=98.73 E-value=2.5e-07 Score=96.43 Aligned_cols=96 Identities=26% Similarity=0.289 Sum_probs=72.2
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCC------------CcCCHhhhhccC
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENG------------TLGDIYETISGS 179 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~------------t~~d~~Eav~~A 179 (583)
++|+|||.|.||.++|..|.++ |++|.+..|. +..+...+.|+...+. ...+..+.++.+
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~------G~~V~~~~r~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAA------GADVTLIGRA--RIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDPAALATA 74 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhc------CCcEEEEecH--HHHHHHHhcCceeecCCCcceecccceeEeccChhhccCC
Confidence 7899999999999999999998 9988877764 2234445556532110 011223567899
Q ss_pred CeEEEeccchHHHHHHHHHHhcCCCCcEEE-EecCch
Q 007951 180 DLVLLLISDAAQADNYEKIFSCMKPNSILG-LSHGFL 215 (583)
Q Consensus 180 DIVILavpd~a~~~Vl~eI~~~Lk~GaiL~-~a~G~~ 215 (583)
|+||+++|+....++++++.++++++++|+ ...|+.
T Consensus 75 D~vil~vk~~~~~~~~~~l~~~~~~~~iii~~~nG~~ 111 (341)
T PRK08229 75 DLVLVTVKSAATADAAAALAGHARPGAVVVSFQNGVR 111 (341)
T ss_pred CEEEEEecCcchHHHHHHHHhhCCCCCEEEEeCCCCC
Confidence 999999999999999999999999998765 556765
No 91
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.73 E-value=4.7e-07 Score=95.58 Aligned_cols=200 Identities=20% Similarity=0.249 Sum_probs=124.7
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHc--------CceecC--CCcCCHhhhhccCCe
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--------GFTEEN--GTLGDIYETISGSDL 181 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~--------G~~~~d--~t~~d~~Eav~~ADI 181 (583)
+||+|||.|+-|.|+|+-|.++ |++|.++.|+.+- .+.-.+. |+...+ ....|+.+++++||+
T Consensus 2 ~kI~ViGaGswGTALA~~la~n------g~~V~lw~r~~~~-~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~ 74 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARN------GHEVRLWGRDEEI-VAEINETRENPKYLPGILLPPNLKATTDLAEALDGADI 74 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhc------CCeeEEEecCHHH-HHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCE
Confidence 7899999999999999999999 9988887765321 1111110 221100 115678999999999
Q ss_pred EEEeccchHHHHHHHHHHhcCCCCcE-EEEecCch-------hhhhhcccccCCCCccEEEeccCCCchhhHHhHhcccc
Q 007951 182 VLLLISDAAQADNYEKIFSCMKPNSI-LGLSHGFL-------LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKE 253 (583)
Q Consensus 182 VILavpd~a~~~Vl~eI~~~Lk~Gai-L~~a~G~~-------i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e 253 (583)
|++++|-+.+.++++++.++++++++ |+.+.|+. ...+++ .+|.+.-++..=||-...+
T Consensus 75 iv~avPs~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e---~l~~~~~~vLSGPs~A~EV---------- 141 (329)
T COG0240 75 IVIAVPSQALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEE---ELPDNPIAVLSGPSFAKEV---------- 141 (329)
T ss_pred EEEECChHHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHH---HcCCCeEEEEECccHHHHH----------
Confidence 99999999999999999999988886 45777874 223333 3444434444445433222
Q ss_pred ccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhHhhHHHHH--HHHHHHHHHHcCCCH
Q 007951 254 INGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGI--VESLFRRFTENGMNE 331 (583)
Q Consensus 254 ~~G~Gv~aliAv~qd~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvLsG~~pAl--ieAl~d~~Ve~Gl~~ 331 (583)
.+|.|+-+++... +.+..+.+..+|. ++ +|.--+-.|..|-+ ++|.+--. |-+++--+...|-.-
T Consensus 142 --a~g~pta~~vas~-d~~~a~~v~~~f~---~~-----~Frvy~~~Dv~Gve--igGAlKNViAIA~Gi~dGlg~G~Na 208 (329)
T COG0240 142 --AQGLPTAVVVASN-DQEAAEKVQALFS---SP-----YFRVYTSTDVIGVE--IGGALKNVIAIAAGIADGLGLGDNA 208 (329)
T ss_pred --hcCCCcEEEEecC-CHHHHHHHHHHhC---CC-----cEEEEecCchhhhH--HHHHHHHHHHHHHHHHHHhhcChhH
Confidence 2578886766553 3333333344443 33 22233344777666 67776652 444455555666665
Q ss_pred HHHHH-HHHHHHHH
Q 007951 332 DLAYK-NTVECITG 344 (583)
Q Consensus 332 e~A~~-~~~q~l~G 344 (583)
.-|.. .++.||..
T Consensus 209 kaalitrGL~Em~r 222 (329)
T COG0240 209 KAALITRGLAEMTR 222 (329)
T ss_pred HHHHHHhHHHHHHH
Confidence 55544 45566544
No 92
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.72 E-value=4e-06 Score=97.02 Aligned_cols=347 Identities=12% Similarity=0.118 Sum_probs=190.2
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHH-----------HHHHcCceecC---------CC
Q 007951 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA-----------EARAAGFTEEN---------GT 168 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~-----------~A~~~G~~~~d---------~t 168 (583)
+.|++|+|||.|.||..+|.-+..+ |++|++.+...+ ..+ +..+.|..... ..
T Consensus 311 ~~i~~v~ViGaG~mG~gIA~~~a~~------G~~V~l~d~~~~-~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~ 383 (715)
T PRK11730 311 KPVKQAAVLGAGIMGGGIAYQSASK------GVPVIMKDINQK-ALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRP 383 (715)
T ss_pred cccceEEEECCchhHHHHHHHHHhC------CCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEE
Confidence 4668999999999999999999988 999887766532 222 22223321100 00
Q ss_pred cCCHhhhhccCCeEEEeccchHHH--HHHHHHHhcCCCCcEEE-EecCchhhhhhcccccCCCCccEEEeccCCCchhhH
Q 007951 169 LGDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVR 245 (583)
Q Consensus 169 ~~d~~Eav~~ADIVILavpd~a~~--~Vl~eI~~~Lk~GaiL~-~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR 245 (583)
..+. +.+++||+||=++|.+... +++.++.++++++++|. -++++.+..+.+ .....-+|+..|+=.|.+.++
T Consensus 384 ~~~~-~~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~---~~~~p~r~~g~Hff~P~~~~~ 459 (715)
T PRK11730 384 TLDY-AGFERVDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISISLLAK---ALKRPENFCGMHFFNPVHRMP 459 (715)
T ss_pred eCCH-HHhcCCCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh---hcCCCccEEEEecCCcccccc
Confidence 2344 5679999999999976654 69999999999999874 778888777765 333345799999988887741
Q ss_pred HhHhccccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhHhhHHHH-HHHHHHHHH
Q 007951 246 RLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG-IVESLFRRF 324 (583)
Q Consensus 246 ~lf~~G~e~~G~Gv~aliAv~qd~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvLsG~~pA-lieAl~d~~ 324 (583)
.-= |.++...+++.++.+.+++..+|..-++- .+ .. +-+.+=+.. ++. -+-.+
T Consensus 460 -------------lVE-vv~g~~T~~~~~~~~~~~~~~lgk~pv~v----~d--~p-----Gfv~nRi~~~~~~-ea~~l 513 (715)
T PRK11730 460 -------------LVE-VIRGEKTSDETIATVVAYASKMGKTPIVV----ND--CP-----GFFVNRVLFPYFA-GFSQL 513 (715)
T ss_pred -------------eEE-eeCCCCCCHHHHHHHHHHHHHhCCceEEe----cC--cC-----chhHHHHHHHHHH-HHHHH
Confidence 112 45688889999999999999999652211 11 11 112222222 222 23356
Q ss_pred HHcCCCHHHHHHHHHHHH---HHHHHHHHHHhcHHHHHHhcCcchhhhhhhhhcccchhHHHHHHHHHHhccCChhhhHH
Q 007951 325 TENGMNEDLAYKNTVECI---TGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSV 401 (583)
Q Consensus 325 Ve~Gl~~e~A~~~~~q~l---~Glia~li~e~G~~~m~d~vS~~~~aeyg~~~~~~~~p~~~~m~e~~~~I~sG~far~~ 401 (583)
++.|.++++-=...-+.+ +| --.++-..|++.+++.... ....+++.+ +.+.-+.+++. |..|.+.++
T Consensus 514 v~~Ga~~e~ID~a~~~~~G~~~G-P~~~~D~~Gld~~~~~~~~-~~~~~~~~~---~~~~~~~l~~~---v~~G~~G~k- 584 (715)
T PRK11730 514 LRDGADFRQIDKVMEKQFGWPMG-PAYLLDVVGIDTAHHAQAV-MAEGFPDRM---KKDYRDAIDVL---FEAKRFGQK- 584 (715)
T ss_pred HHcCCCHHHHHHHHHhhCCCccC-HHHHHHhhchHHHHHHHHH-HHHhcCCcc---ccchhHHHHHH---HHCCCCccc-
Confidence 788888876444322211 34 3355666677555543221 111233211 11112244444 455766665
Q ss_pred HHhcccccccCCCCCCcchhhhcChHHHHHHHHHccCCCCCCCCCCc--chhHHHHHHHHHHHHHHHHhC--CChhhhhh
Q 007951 402 VLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLHP--FTAGVYAALMMAQIEILRKKG--HSYSEIIN 477 (583)
Q Consensus 402 ~~e~~~~~~~~g~~~~~~~~i~~~~ie~vG~~lR~~~~~gei~~~~~--~~~g~~~~~~~a~~~~l~~~g--h~~se~~n 477 (583)
.++.+|.-.. +. ..+.+..+-..+.+.++..... . ..+.+ +.+=++.+++---+.+ -++| -+|++ ++
T Consensus 585 --~g~GfY~y~~-~~--~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~i~nRll~~~~~Ea~~l-l~eGvva~~~d-ID 655 (715)
T PRK11730 585 --NGKGFYRYEE-DK--KGKPKKEVDPAVYELLAPVVQP-K-REFSDEEIIARMMIPMINEVVRC-LEEGIVASPAE-AD 655 (715)
T ss_pred --cCCEeEeccc-CC--CcccccCCCHHHHHHHHHhccc-c-CCCCHHHHHHHHHHHHHHHHHHH-HhcCCcCCHHH-HH
Confidence 2333432110 00 0011000001222333222110 0 01221 2344444444433444 5566 56644 45
Q ss_pred hhHHHHhh------hcchhhhhccchhhhhhcchhhhcc
Q 007951 478 ESVIESVD------SLNPFMHARGVSFMVDNCSTTARLG 510 (583)
Q Consensus 478 e~~~e~~~------sl~p~~~~~g~~~m~~~cs~ta~~g 510 (583)
..+...+- =.+-|+..-|++-+++.+..-+++|
T Consensus 656 ~a~~~g~G~p~~~gGPf~~~D~~Gld~~~~~~~~~~~~~ 694 (715)
T PRK11730 656 MALVYGLGFPPFRGGAFRYLDTLGVANYVALADKYAHLG 694 (715)
T ss_pred HHHHhCCCCCCCcCCHHHHHHHhCHHHHHHHHHHHHHcC
Confidence 55544443 1223566678888888887655555
No 93
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=98.72 E-value=2e-08 Score=96.57 Aligned_cols=106 Identities=23% Similarity=0.302 Sum_probs=76.0
Q ss_pred ecccc--ccccchhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCH
Q 007951 95 RGGRD--LFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172 (583)
Q Consensus 95 ~~~r~--~f~~~~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~ 172 (583)
+.|+| .-......+.| ++|||||+|.+|..+|+.|+.- |.+|++.++.... ...+...++. ..+.
T Consensus 19 ~~~~W~~~~~~~~~~l~g-~tvgIiG~G~IG~~vA~~l~~f------G~~V~~~d~~~~~-~~~~~~~~~~-----~~~l 85 (178)
T PF02826_consen 19 RNGEWASRERFPGRELRG-KTVGIIGYGRIGRAVARRLKAF------GMRVIGYDRSPKP-EEGADEFGVE-----YVSL 85 (178)
T ss_dssp HTTBHHHHTTTTBS-STT-SEEEEESTSHHHHHHHHHHHHT------T-EEEEEESSCHH-HHHHHHTTEE-----ESSH
T ss_pred HcCCCCCCcCCCccccCC-CEEEEEEEcCCcCeEeeeeecC------CceeEEecccCCh-hhhcccccce-----eeeh
Confidence 44566 22333578899 9999999999999999999977 9998777765432 2335566775 5689
Q ss_pred hhhhccCCeEEEeccchHH-HHHHH-HHHhcCCCCcEEE-EecC
Q 007951 173 YETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILG-LSHG 213 (583)
Q Consensus 173 ~Eav~~ADIVILavpd~a~-~~Vl~-eI~~~Lk~GaiL~-~a~G 213 (583)
+|++++||+|++++|-... ..++. +....||+|++++ .+-|
T Consensus 86 ~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG 129 (178)
T PF02826_consen 86 DELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARG 129 (178)
T ss_dssp HHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSG
T ss_pred hhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEeccch
Confidence 9999999999999995443 34554 5788899999877 4444
No 94
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=98.72 E-value=1.3e-07 Score=108.42 Aligned_cols=135 Identities=13% Similarity=-0.040 Sum_probs=99.9
Q ss_pred EEEeccchHHHHHHHHHHhcCCCCcEEEEecCchhhhhhcccccCCCC-ccEEEeccCCCchhhHHhHhccccccCCCce
Q 007951 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKN-IGVIAVCPKGMGPSVRRLYVQGKEINGAGIN 260 (583)
Q Consensus 182 VILavpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~~i~~ie~~~i~~p~d-v~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~ 260 (583)
||||+|+..+.++++++.++++++++|+|+.+++...++...-.++.+ .+||..|| +.|.+. ..|........+|.+
T Consensus 1 vila~Pv~~~~~~~~~~~~~~~~~~~vtDv~SvK~~i~~~~~~~l~~~~~~fvg~HP-MaG~e~-~G~~~a~~~Lf~~~~ 78 (673)
T PRK11861 1 VLLAAPVAQTGPLLARIAPFLDASTIVTDAGSTKSDVVAAARAALGARIGQFVPGHP-IAGRES-SGVDAALADLYVGRN 78 (673)
T ss_pred CEEEcCHHHHHHHHHHHhhhCCCCcEEEecCcccHHHHHHHHHhccccCCeEEecCC-cCcCcc-hhhhhhChhHhCCCe
Confidence 689999999999999999999999999999999844332211133433 57999999 556553 334444444447899
Q ss_pred EEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhHhhHHHHHHHHHHHHH
Q 007951 261 SSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRF 324 (583)
Q Consensus 261 aliAv~qd~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvLsG~~pAlieAl~d~~ 324 (583)
+++||.++.+.++++.+++++..+|+ +++.++.++||+.-.+ +|+.=+-+.-++...+
T Consensus 79 ~il~p~~~~~~~~~~~~~~l~~~~Ga-~~~~~~~~~HD~~~A~-----iShlpH~~a~~l~~~~ 136 (673)
T PRK11861 79 VVLCALPENAPDALARVEAMWRAARA-DVRAMSAEQHDRVFAA-----VSHLPHVLSFALVEQI 136 (673)
T ss_pred EEEecCCCCCHHHHHHHHHHHHHcCC-EEEECCHHHHHHHHHH-----HhhHHHHHHHHHHHHH
Confidence 99999999999999999999999995 6899999999776533 3443333444444444
No 95
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=98.72 E-value=7.5e-08 Score=101.67 Aligned_cols=149 Identities=22% Similarity=0.244 Sum_probs=102.9
Q ss_pred eccccccccc-hhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHh
Q 007951 95 RGGRDLFNLL-PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173 (583)
Q Consensus 95 ~~~r~~f~~~-~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~ 173 (583)
|+|.|..... ...|.| ||+||||+|.+|..+|..++.- |.+|+++++..++ +.+...+... ..+.+
T Consensus 126 ~~g~W~~~~~~g~el~g-kTvGIiG~G~IG~~va~~l~af------gm~v~~~d~~~~~--~~~~~~~~~~----~~~Ld 192 (324)
T COG0111 126 RRGEWDRKAFRGTELAG-KTVGIIGLGRIGRAVAKRLKAF------GMKVIGYDPYSPR--ERAGVDGVVG----VDSLD 192 (324)
T ss_pred HcCCccccccccccccC-CEEEEECCCHHHHHHHHHHHhC------CCeEEEECCCCch--hhhcccccee----cccHH
Confidence 7778876222 347889 9999999999999999999987 9998776664433 2344455553 56899
Q ss_pred hhhccCCeEEEeccch-HHHHHHH-HHHhcCCCCcEEEEe-cCc------hhhhhhcccccCCCCccEEEeccCCCchhh
Q 007951 174 ETISGSDLVLLLISDA-AQADNYE-KIFSCMKPNSILGLS-HGF------LLGHLQSMGLDFPKNIGVIAVCPKGMGPSV 244 (583)
Q Consensus 174 Eav~~ADIVILavpd~-a~~~Vl~-eI~~~Lk~GaiL~~a-~G~------~i~~ie~~~i~~p~dv~VI~v~PngPg~~v 244 (583)
+++++||+|++.+|-. ....++. +....||+|++++-+ =|- .+..+++..+. ...+||.-..|..+.+.
T Consensus 193 ~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~aRG~vVde~aL~~AL~~G~i~-gA~lDVf~~EPl~~~~p- 270 (324)
T COG0111 193 ELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGGVVDEDALLAALDSGKIA-GAALDVFEEEPLPADSP- 270 (324)
T ss_pred HHHhhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECCCcceecHHHHHHHHHcCCcc-eEEecCCCCCCCCCCCh-
Confidence 9999999999999944 4455775 577889999987744 332 13344443332 34677887777666544
Q ss_pred HHhHhccccccCCCceEEEeecCC
Q 007951 245 RRLYVQGKEINGAGINSSFAVHQD 268 (583)
Q Consensus 245 R~lf~~G~e~~G~Gv~aliAv~qd 268 (583)
+|.- -+.+++||--
T Consensus 271 --L~~~--------pnV~~TPHia 284 (324)
T COG0111 271 --LWDL--------PNVILTPHIG 284 (324)
T ss_pred --hhcC--------CCeEECCccc
Confidence 3332 3556688873
No 96
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=98.71 E-value=4.1e-06 Score=96.91 Aligned_cols=349 Identities=11% Similarity=0.107 Sum_probs=191.3
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHH-----------HHHcCceecC---------CC
Q 007951 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEEN---------GT 168 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~-----------A~~~G~~~~d---------~t 168 (583)
..|++|+|||.|.||..+|..+..+ |++|++.+...+ ..+. ..+.|-.... ..
T Consensus 311 ~~i~~v~ViGaG~mG~gIA~~~a~~------G~~V~l~d~~~~-~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~ 383 (714)
T TIGR02437 311 KDVKQAAVLGAGIMGGGIAYQSASK------GTPIVMKDINQH-SLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITP 383 (714)
T ss_pred cccceEEEECCchHHHHHHHHHHhC------CCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEE
Confidence 4568999999999999999999988 999887765532 2222 1222211000 00
Q ss_pred cCCHhhhhccCCeEEEeccchHHH--HHHHHHHhcCCCCcEEE-EecCchhhhhhcccccCCCCccEEEeccCCCchhhH
Q 007951 169 LGDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVR 245 (583)
Q Consensus 169 ~~d~~Eav~~ADIVILavpd~a~~--~Vl~eI~~~Lk~GaiL~-~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR 245 (583)
..+. +.+++||+||=++|.+.-. +++.++.+.++|+++|. -++++.+..+.. ..+..-+|+..|+=.|.+.++
T Consensus 384 ~~~~-~~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~~ia~---~~~~p~r~ig~Hff~P~~~~~ 459 (714)
T TIGR02437 384 TLSY-AGFDNVDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTSTISISLLAK---ALKRPENFCGMHFFNPVHRMP 459 (714)
T ss_pred eCCH-HHhcCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHh---hcCCcccEEEEecCCCcccCc
Confidence 2344 4679999999999976653 69999999999999874 678888777755 233335799999988887731
Q ss_pred HhHhccccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhHhhHHHHHHHHHHHHHH
Q 007951 246 RLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFT 325 (583)
Q Consensus 246 ~lf~~G~e~~G~Gv~aliAv~qd~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvLsG~~pAlieAl~d~~V 325 (583)
.-= |.++...+++.++.+.+++..+|..-++- .+ .. +-+.+=+..-+-.-+-.++
T Consensus 460 -------------lvE-vv~g~~Ts~~~~~~~~~~~~~lgk~pv~v----~d--~p-----Gfi~NRl~~~~~~ea~~l~ 514 (714)
T TIGR02437 460 -------------LVE-VIRGEKSSDETIATVVAYASKMGKTPIVV----ND--CP-----GFFVNRVLFPYFGGFSKLL 514 (714)
T ss_pred -------------eEe-ecCCCCCCHHHHHHHHHHHHHcCCEEEEe----CC--cc-----cchHHHHHHHHHHHHHHHH
Confidence 111 45677889999999999999999642211 11 11 1122222221222234467
Q ss_pred HcCCCHHHHHHHHHHH---HHHHHHHHHHHhcHHHHHHhcCcchhhhhhhhhcccchhHHHHHHHHHHhccCChhhhHHH
Q 007951 326 ENGMNEDLAYKNTVEC---ITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVV 402 (583)
Q Consensus 326 e~Gl~~e~A~~~~~q~---l~Glia~li~e~G~~~m~d~vS~~~~aeyg~~~~~~~~p~~~~m~e~~~~I~sG~far~~~ 402 (583)
+.|.++++-=...-+. =+| --.++-..|++.+++.... -...+++.+...+ -..+++. |..|.+.|+.
T Consensus 515 ~eG~~~~~ID~a~~~~~G~p~G-Pf~l~D~~Gld~~~~i~~~-~~~~~~~~~~~~~---~~~l~~~---v~~G~lG~K~- 585 (714)
T TIGR02437 515 RDGADFVRIDKVMEKQFGWPMG-PAYLLDVVGIDTGHHAQAV-MAEGFPDRMGKDG---RDAIDAL---FEAKRLGQKN- 585 (714)
T ss_pred HCCCCHHHHHHHHHhcCCCccC-HHHHHHhhhHHHHHHHHHH-HHHhcCcccccch---hHHHHHH---HHCCCCcccC-
Confidence 8898887643322111 124 2356666677655543221 1122333211111 2244444 3457776652
Q ss_pred HhcccccccC-CCCCCcchhhhcChHHHHHHHHHccCCCCCCCCCCcchhHHHHHHHHHHHHHHHHhC--CChhhhhhhh
Q 007951 403 LAGRRFYEKE-GLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLHPFTAGVYAALMMAQIEILRKKG--HSYSEIINES 479 (583)
Q Consensus 403 ~e~~~~~~~~-g~~~~~~~~i~~~~ie~vG~~lR~~~~~gei~~~~~~~~g~~~~~~~a~~~~l~~~g--h~~se~~ne~ 479 (583)
++.+|.-. +... ..++..+..+.+.=+..|. +..++ +..-+.+=++.++..--..+| ++| .++++ ++.-
T Consensus 586 --g~GfY~y~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~i~~Rll~~~~nEa~~ll-~eGiva~~~d-ID~~ 657 (714)
T TIGR02437 586 --GKGFYAYEADKKG-KPKKLVDSSVLELLKPVVY--EQRDF-DDEEIIARMMIPMINETVRCL-EEGIVATAAE-ADMG 657 (714)
T ss_pred --CCEEEecccCcCc-cccCCCCHHHHHHHHHhhc--ccCCC-CHHHHHHHHHHHHHHHHHHHH-hCCCcCCHHH-HHHH
Confidence 33333111 0000 0000111222222122222 11111 111234555555555555565 555 66654 3444
Q ss_pred HHHHhh------hcchhhhhccchhhhhhcchhhhcc
Q 007951 480 VIESVD------SLNPFMHARGVSFMVDNCSTTARLG 510 (583)
Q Consensus 480 ~~e~~~------sl~p~~~~~g~~~m~~~cs~ta~~g 510 (583)
..-..- =.+.|+...|++-+++.|..=+++|
T Consensus 658 ~~~G~Gfp~~~gGP~~~~D~~Gl~~~~~~~~~~~~~g 694 (714)
T TIGR02437 658 LVYGLGFPPFRGGAFRYLDSIGVANFVALADQYAELG 694 (714)
T ss_pred HHhCCCCCCccCCHHHHHHHhCHHHHHHHHHHHHHhC
Confidence 443332 2334666688888888887545555
No 97
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=98.70 E-value=6.6e-07 Score=95.20 Aligned_cols=98 Identities=19% Similarity=0.330 Sum_probs=72.7
Q ss_pred EEEEEccchhHHHHHHHHHHhhhhhcCC--------ceEEEEecCC---cccHHHHHHc---------CceecC--CCcC
Q 007951 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSD--------IVVKVGLRKG---SRSFAEARAA---------GFTEEN--GTLG 170 (583)
Q Consensus 113 kIgIIG~G~mG~A~A~nLrdsl~~~g~G--------~~ViVg~r~~---s~s~~~A~~~---------G~~~~d--~t~~ 170 (583)
||+|||.|+.|.++|.-|.++ | ++|.++.+.. .+........ |+...+ ....
T Consensus 1 kI~VIGaG~wGtALA~~la~n------g~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~ 74 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAEN------ARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVP 74 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHc------CCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEEC
Confidence 689999999999999999988 7 7888876632 1111111111 221100 0135
Q ss_pred CHhhhhccCCeEEEeccchHHHHHHHHHHhcCCCCcE-EEEecCchh
Q 007951 171 DIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSI-LGLSHGFLL 216 (583)
Q Consensus 171 d~~Eav~~ADIVILavpd~a~~~Vl~eI~~~Lk~Gai-L~~a~G~~i 216 (583)
|+++++++||+||+++|++.+.++++++.++++++++ |+.+.|+..
T Consensus 75 dl~eal~~ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs~tKGie~ 121 (342)
T TIGR03376 75 DLVEAAKGADILVFVIPHQFLEGICKQLKGHVKPNARAISCIKGLEV 121 (342)
T ss_pred CHHHHHhcCCEEEEECChHHHHHHHHHHHhhcCCCCEEEEEeCCccc
Confidence 7889999999999999999999999999999998874 678888854
No 98
>PRK07574 formate dehydrogenase; Provisional
Probab=98.69 E-value=8.1e-08 Score=103.58 Aligned_cols=158 Identities=18% Similarity=0.114 Sum_probs=103.1
Q ss_pred eecccccccc---chhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcC
Q 007951 94 VRGGRDLFNL---LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG 170 (583)
Q Consensus 94 ~~~~r~~f~~---~~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~ 170 (583)
++.|+|.-.. ....+.| |+|||||+|+||..+|+.|+.. |.+|++.++... ..+.....|+.. ..
T Consensus 173 ~~~g~W~~~~~~~~~~~L~g-ktVGIvG~G~IG~~vA~~l~~f------G~~V~~~dr~~~-~~~~~~~~g~~~----~~ 240 (385)
T PRK07574 173 AVEGGWNIADCVSRSYDLEG-MTVGIVGAGRIGLAVLRRLKPF------DVKLHYTDRHRL-PEEVEQELGLTY----HV 240 (385)
T ss_pred HHhCCCCcccccccceecCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEECCCCC-chhhHhhcCcee----cC
Confidence 3456675321 2356899 9999999999999999999977 988877766532 233334456553 45
Q ss_pred CHhhhhccCCeEEEeccchHH-HHHHH-HHHhcCCCCcEEEEe-cCch------hhhhhcccccCCCCccEEEeccCCCc
Q 007951 171 DIYETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLS-HGFL------LGHLQSMGLDFPKNIGVIAVCPKGMG 241 (583)
Q Consensus 171 d~~Eav~~ADIVILavpd~a~-~~Vl~-eI~~~Lk~GaiL~~a-~G~~------i~~ie~~~i~~p~dv~VI~v~PngPg 241 (583)
+.+|++++||+|++++|.... ..++. +....||+|++|+.+ -|-. +..+++..+. ....||....|--+.
T Consensus 241 ~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~i~-GAaLDV~~~EPlp~d 319 (385)
T PRK07574 241 SFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALESGHLA-GYAGDVWFPQPAPAD 319 (385)
T ss_pred CHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHhCCcc-EEEEecCCCCCCCCC
Confidence 899999999999999996655 45675 688899999988744 4421 2233332222 234677766664333
Q ss_pred hhhHHhHhccccccCCCceEEEeecC-CCCHHHHH
Q 007951 242 PSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATN 275 (583)
Q Consensus 242 ~~vR~lf~~G~e~~G~Gv~aliAv~q-d~sgeale 275 (583)
+.. +.- -|.+++||- ..+.++.+
T Consensus 320 ~pL---~~~--------pNvilTPHiag~T~e~~~ 343 (385)
T PRK07574 320 HPW---RTM--------PRNGMTPHISGTTLSAQA 343 (385)
T ss_pred ChH---HhC--------CCeEECCccccCcHHHHH
Confidence 332 221 366788876 34445444
No 99
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=98.68 E-value=8.9e-08 Score=101.15 Aligned_cols=116 Identities=16% Similarity=0.192 Sum_probs=79.8
Q ss_pred hhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 007951 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (583)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVIL 184 (583)
...+.| ++|||||+|+||.++|+.|+.. |.+|+++++....... .... ..+.++++++||+|++
T Consensus 141 ~~~l~g-~~VgIIG~G~IG~~vA~~L~~~------G~~V~~~d~~~~~~~~-----~~~~----~~~l~ell~~aDiVil 204 (330)
T PRK12480 141 SKPVKN-MTVAIIGTGRIGAATAKIYAGF------GATITAYDAYPNKDLD-----FLTY----KDSVKEAIKDADIISL 204 (330)
T ss_pred ccccCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEeCChhHhhh-----hhhc----cCCHHHHHhcCCEEEE
Confidence 457899 9999999999999999999987 9988776654322111 1111 3578999999999999
Q ss_pred eccchHH-HHHH-HHHHhcCCCCcEEE-EecCch------hhhhhcccccCCCCccEEEecc
Q 007951 185 LISDAAQ-ADNY-EKIFSCMKPNSILG-LSHGFL------LGHLQSMGLDFPKNIGVIAVCP 237 (583)
Q Consensus 185 avpd~a~-~~Vl-~eI~~~Lk~GaiL~-~a~G~~------i~~ie~~~i~~p~dv~VI~v~P 237 (583)
++|.... ..++ +++.+.||+|++|+ .+-|-. +..+++..+. ....||..-.|
T Consensus 205 ~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g~i~-gaalDV~~~EP 265 (330)
T PRK12480 205 HVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTLL-GAAIDTYENEA 265 (330)
T ss_pred eCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHcCCee-EEEEeccCCCC
Confidence 9997764 3444 46889999999876 455542 2233332221 23456666566
No 100
>PLN03139 formate dehydrogenase; Provisional
Probab=98.68 E-value=9e-08 Score=103.27 Aligned_cols=158 Identities=15% Similarity=0.075 Sum_probs=102.7
Q ss_pred eeccccccc---cchhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcC
Q 007951 94 VRGGRDLFN---LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG 170 (583)
Q Consensus 94 ~~~~r~~f~---~~~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~ 170 (583)
++.|+|.-. .....|.| ++|||||+|.||..+|+.|+.. |.+|+++++.. ...+...+.|+.. ..
T Consensus 180 ~~~g~W~~~~~~~~~~~L~g-ktVGIVG~G~IG~~vA~~L~af------G~~V~~~d~~~-~~~~~~~~~g~~~----~~ 247 (386)
T PLN03139 180 VVSGEWNVAGIAYRAYDLEG-KTVGTVGAGRIGRLLLQRLKPF------NCNLLYHDRLK-MDPELEKETGAKF----EE 247 (386)
T ss_pred HHhCCCccccccCCCcCCCC-CEEEEEeecHHHHHHHHHHHHC------CCEEEEECCCC-cchhhHhhcCcee----cC
Confidence 355677532 12356899 9999999999999999999977 98887665542 2233444556653 45
Q ss_pred CHhhhhccCCeEEEeccchHH-HHHHH-HHHhcCCCCcEEEEe-cCch------hhhhhcccccCCCCccEEEeccCCCc
Q 007951 171 DIYETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLS-HGFL------LGHLQSMGLDFPKNIGVIAVCPKGMG 241 (583)
Q Consensus 171 d~~Eav~~ADIVILavpd~a~-~~Vl~-eI~~~Lk~GaiL~~a-~G~~------i~~ie~~~i~~p~dv~VI~v~PngPg 241 (583)
+.+|++++||+|++++|.... ..++. ++...||+|++|+.+ -|-. +..+++..+. ....||..-.|..+.
T Consensus 248 ~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~l~-GAaLDV~~~EPlp~d 326 (386)
T PLN03139 248 DLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACSSGHIG-GYGGDVWYPQPAPKD 326 (386)
T ss_pred CHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHHcCCce-EEEEcCCCCCCCCCC
Confidence 899999999999999996555 45665 688999999988755 3321 2233332222 235677766674444
Q ss_pred hhhHHhHhccccccCCCceEEEeecCC-CCHHHHH
Q 007951 242 PSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATN 275 (583)
Q Consensus 242 ~~vR~lf~~G~e~~G~Gv~aliAv~qd-~sgeale 275 (583)
+.. +.- -|.+++||-. .+.++.+
T Consensus 327 ~pL---~~~--------pNvilTPHiag~t~~~~~ 350 (386)
T PLN03139 327 HPW---RYM--------PNHAMTPHISGTTIDAQL 350 (386)
T ss_pred Chh---hcC--------CCeEEcccccccCHHHHH
Confidence 332 111 3667888763 3444443
No 101
>PRK06436 glycerate dehydrogenase; Provisional
Probab=98.67 E-value=1e-07 Score=99.66 Aligned_cols=149 Identities=14% Similarity=0.116 Sum_probs=95.6
Q ss_pred eccccccccchhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhh
Q 007951 95 RGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE 174 (583)
Q Consensus 95 ~~~r~~f~~~~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~E 174 (583)
+.|+|.... ...|.| ++|||||+|+||.++|+.|+.. |.+|+++++...+ .|+.. ...+.++
T Consensus 108 ~~g~w~~~~-~~~L~g-ktvgIiG~G~IG~~vA~~l~af------G~~V~~~~r~~~~-------~~~~~---~~~~l~e 169 (303)
T PRK06436 108 KNGNFKQSP-TKLLYN-KSLGILGYGGIGRRVALLAKAF------GMNIYAYTRSYVN-------DGISS---IYMEPED 169 (303)
T ss_pred HcCCCCCCC-CCCCCC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEECCCCcc-------cCccc---ccCCHHH
Confidence 456675432 357899 9999999999999999988766 8888776654211 23321 1357899
Q ss_pred hhccCCeEEEeccchHHH-HHHH-HHHhcCCCCcEEEEe-cCch------hhhhhcccccCCCCccEEEeccCCCchhhH
Q 007951 175 TISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLS-HGFL------LGHLQSMGLDFPKNIGVIAVCPKGMGPSVR 245 (583)
Q Consensus 175 av~~ADIVILavpd~a~~-~Vl~-eI~~~Lk~GaiL~~a-~G~~------i~~ie~~~i~~p~dv~VI~v~PngPg~~vR 245 (583)
++++||+|++++|..... .++. +....||+|++++.+ -|-. +..+++..+. ....||..-.|..+.+.
T Consensus 170 ll~~aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g~i~-~a~lDV~~~EP~~~~~~-- 246 (303)
T PRK06436 170 IMKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNHNDK-YYLSDVWWNEPIITETN-- 246 (303)
T ss_pred HHhhCCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCce-EEEEccCCCCCCCccCC--
Confidence 999999999999976654 4555 578889999988744 3321 2223221111 12346666566322211
Q ss_pred HhHhccccccCCCceEEEeecC--CCCHHHHHH
Q 007951 246 RLYVQGKEINGAGINSSFAVHQ--DVDGRATNV 276 (583)
Q Consensus 246 ~lf~~G~e~~G~Gv~aliAv~q--d~sgeale~ 276 (583)
=-+.+++||- ..+.+..+.
T Consensus 247 ------------~~nviiTPHi~g~~t~e~~~~ 267 (303)
T PRK06436 247 ------------PDNVILSPHVAGGMSGEIMQP 267 (303)
T ss_pred ------------CCCEEECCccccccCHHHHHH
Confidence 1467899993 356654443
No 102
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=98.65 E-value=4.8e-06 Score=96.10 Aligned_cols=153 Identities=12% Similarity=0.143 Sum_probs=109.5
Q ss_pred CCCEEEEEccchhHHHHHHHHH-HhhhhhcCCceEEEEecCCcccHHHH-----------HHcCceecC---------CC
Q 007951 110 GINQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGSRSFAEA-----------RAAGFTEEN---------GT 168 (583)
Q Consensus 110 gikkIgIIG~G~mG~A~A~nLr-dsl~~~g~G~~ViVg~r~~s~s~~~A-----------~~~G~~~~d---------~t 168 (583)
.+++|+|||.|.||..+|.-+. .+ |++|++.+.+.+ ..+.+ .+.|-.... ..
T Consensus 303 ~i~~v~ViGaG~mG~~iA~~~a~~~------G~~V~l~d~~~~-~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~ 375 (699)
T TIGR02440 303 KIKKVGILGGGLMGGGIASVTATKA------GIPVRIKDINPQ-GINNALKYAWKLLDKGVKRRHMTPAERDNQMALITG 375 (699)
T ss_pred cccEEEEECCcHHHHHHHHHHHHHc------CCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEE
Confidence 4589999999999999999886 57 999887665532 22221 122211000 00
Q ss_pred cCCHhhhhccCCeEEEeccchHHH--HHHHHHHhcCCCCcEEE-EecCchhhhhhcccccCCCCccEEEeccCCCchhhH
Q 007951 169 LGDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVR 245 (583)
Q Consensus 169 ~~d~~Eav~~ADIVILavpd~a~~--~Vl~eI~~~Lk~GaiL~-~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR 245 (583)
..+. +.+++||+||=++|..... +++.++-++++++++|. -++++.+..+.+ .....-+|+..|+=.|.+.++
T Consensus 376 ~~~~-~~~~~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~---~~~~p~r~~g~HffnP~~~~~ 451 (699)
T TIGR02440 376 TTDY-RGFKDVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSSLPIGQIAA---AASRPENVIGLHYFSPVEKMP 451 (699)
T ss_pred eCCh-HHhccCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHH---hcCCcccEEEEecCCccccCc
Confidence 2344 5789999999999977653 69999999999999874 678888877765 223334799999988887631
Q ss_pred HhHhccccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 007951 246 RLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (583)
Q Consensus 246 ~lf~~G~e~~G~Gv~aliAv~qd~sgeale~a~ala~aIG~~ 287 (583)
.-= |.++...+++.++.+.+++..+|..
T Consensus 452 -------------lVE-vv~g~~T~~~~~~~~~~~~~~~gk~ 479 (699)
T TIGR02440 452 -------------LVE-VIPHAGTSEQTIATTVALAKKQGKT 479 (699)
T ss_pred -------------eEE-EeCCCCCCHHHHHHHHHHHHHcCCe
Confidence 111 4557788999999999999999965
No 103
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=98.65 E-value=2.3e-07 Score=98.03 Aligned_cols=162 Identities=23% Similarity=0.255 Sum_probs=106.4
Q ss_pred ceeeeccccccc-----cchhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceec
Q 007951 91 EYIVRGGRDLFN-----LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE 165 (583)
Q Consensus 91 e~v~~~~r~~f~-----~~~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~ 165 (583)
++-+|.|.|... .....++| ||+||||+|.+|.++|+.++.- |.+|.++.+... .+...+.++.
T Consensus 122 ~~~~r~g~w~~~~~~~~~~~~~l~g-ktvGIiG~GrIG~avA~r~~~F------gm~v~y~~~~~~--~~~~~~~~~~-- 190 (324)
T COG1052 122 DRRVREGNWSLSGGPDPLLGFDLRG-KTLGIIGLGRIGQAVARRLKGF------GMKVLYYDRSPN--PEAEKELGAR-- 190 (324)
T ss_pred HHHHhcCcccccCCcccccccCCCC-CEEEEECCCHHHHHHHHHHhcC------CCEEEEECCCCC--hHHHhhcCce--
Confidence 334555666554 44578999 9999999999999999999854 888877766532 2333344455
Q ss_pred CCCcCCHhhhhccCCeEEEeccchHHH-HHHH-HHHhcCCCCcEEE-EecCch------hhhhhcccccCCCCccEEEec
Q 007951 166 NGTLGDIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILG-LSHGFL------LGHLQSMGLDFPKNIGVIAVC 236 (583)
Q Consensus 166 d~t~~d~~Eav~~ADIVILavpd~a~~-~Vl~-eI~~~Lk~GaiL~-~a~G~~------i~~ie~~~i~~p~dv~VI~v~ 236 (583)
..+.+|++++||+|++.+|..... .++. +....||+|.+|+ .+=|-. +.-+++..+. ....||.--.
T Consensus 191 ---y~~l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~g~i~-gaglDV~e~E 266 (324)
T COG1052 191 ---YVDLDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGGLVDEQALIDALKSGKIA-GAGLDVFENE 266 (324)
T ss_pred ---eccHHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCcc-eEEeeecCCC
Confidence 345999999999999999976664 4665 6788899999887 443421 3344443332 4577888777
Q ss_pred cCCCchhhHHhHhccccccCCCceEEEeecC-CCCHHHHH
Q 007951 237 PKGMGPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATN 275 (583)
Q Consensus 237 PngPg~~vR~lf~~G~e~~G~Gv~aliAv~q-d~sgeale 275 (583)
|.-..+..+++-. . -+.+++||. ..|.+++.
T Consensus 267 p~~~d~~l~~l~~-------~-~~vvltPHia~at~ea~~ 298 (324)
T COG1052 267 PALFDHPLLRLDN-------F-PNVVLTPHIASATEEARK 298 (324)
T ss_pred CCCCChhHhhccC-------C-CCEEEccccccccHHHHH
Confidence 7643333211111 1 346788888 34444443
No 104
>PRK08605 D-lactate dehydrogenase; Validated
Probab=98.65 E-value=7.8e-08 Score=101.50 Aligned_cols=96 Identities=19% Similarity=0.178 Sum_probs=69.4
Q ss_pred hhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 007951 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (583)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVIL 184 (583)
...|.| ++|||||+|+||.++|+.|... +|.+|++.++...+. ...++.. ..+.++++++||+|++
T Consensus 141 ~~~l~g-~~VgIIG~G~IG~~vA~~L~~~-----~g~~V~~~d~~~~~~----~~~~~~~----~~~l~ell~~aDvIvl 206 (332)
T PRK08605 141 SRSIKD-LKVAVIGTGRIGLAVAKIFAKG-----YGSDVVAYDPFPNAK----AATYVDY----KDTIEEAVEGADIVTL 206 (332)
T ss_pred cceeCC-CEEEEECCCHHHHHHHHHHHhc-----CCCEEEEECCCccHh----HHhhccc----cCCHHHHHHhCCEEEE
Confidence 356899 9999999999999999999422 277876554432221 1222331 3578999999999999
Q ss_pred eccchHHHHHH--HHHHhcCCCCcEEEEe-cCc
Q 007951 185 LISDAAQADNY--EKIFSCMKPNSILGLS-HGF 214 (583)
Q Consensus 185 avpd~a~~~Vl--~eI~~~Lk~GaiL~~a-~G~ 214 (583)
++|.......+ .+..+.||+|++|+.+ -|.
T Consensus 207 ~lP~t~~t~~li~~~~l~~mk~gailIN~sRG~ 239 (332)
T PRK08605 207 HMPATKYNHYLFNADLFKHFKKGAVFVNCARGS 239 (332)
T ss_pred eCCCCcchhhhcCHHHHhcCCCCcEEEECCCCc
Confidence 99987776544 3578899999987744 443
No 105
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=98.62 E-value=2e-07 Score=97.62 Aligned_cols=145 Identities=15% Similarity=0.165 Sum_probs=95.7
Q ss_pred hhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
..|.| |+|||||+|++|..+|+.++.- |.+|+++++.... ...++. ..+.+|++++||+|+++
T Consensus 141 ~~L~g-ktvGIiG~G~IG~~vA~~~~~f------gm~V~~~d~~~~~-----~~~~~~-----~~~l~ell~~sDvv~lh 203 (311)
T PRK08410 141 GEIKG-KKWGIIGLGTIGKRVAKIAQAF------GAKVVYYSTSGKN-----KNEEYE-----RVSLEELLKTSDIISIH 203 (311)
T ss_pred cccCC-CEEEEECCCHHHHHHHHHHhhc------CCEEEEECCCccc-----cccCce-----eecHHHHhhcCCEEEEe
Confidence 46899 9999999999999999999865 8888766553211 123444 45899999999999999
Q ss_pred ccchHH-HHHHH-HHHhcCCCCcEEE-EecCch------hhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccC
Q 007951 186 ISDAAQ-ADNYE-KIFSCMKPNSILG-LSHGFL------LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEING 256 (583)
Q Consensus 186 vpd~a~-~~Vl~-eI~~~Lk~GaiL~-~a~G~~------i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G 256 (583)
+|-... ..++. +....||||++|+ .+-|-. +..+++..+. ...||..-.|-.+.+.. +.--
T Consensus 204 ~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g~i~--AaLDV~~~EP~~~~~pL---~~~~----- 273 (311)
T PRK08410 204 APLNEKTKNLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALDEKDIY--AGLDVLEKEPMEKNHPL---LSIK----- 273 (311)
T ss_pred CCCCchhhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCeE--EEEecCCCCCCCCCChh---hccC-----
Confidence 995443 45665 6788999999877 555532 3444443332 45677777774433332 2110
Q ss_pred CCceEEEeecCC-CCHHHHHHH
Q 007951 257 AGINSSFAVHQD-VDGRATNVA 277 (583)
Q Consensus 257 ~Gv~aliAv~qd-~sgeale~a 277 (583)
.=-|.+++||-. .+.++.+.+
T Consensus 274 ~~~NvilTPH~a~~t~e~~~~~ 295 (311)
T PRK08410 274 NKEKLLITPHIAWASKEARKTL 295 (311)
T ss_pred CCCCEEECCccccCCHHHHHHH
Confidence 002678899863 455554443
No 106
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=98.60 E-value=1.8e-06 Score=94.21 Aligned_cols=201 Identities=13% Similarity=0.089 Sum_probs=111.9
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceec------------CCCcCCHhhhhccC
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE------------NGTLGDIYETISGS 179 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~------------d~t~~d~~Eav~~A 179 (583)
+||+|||+|.||..+|.+|.+ |++|++.++. +...+... .|..+- .-...+..+++++|
T Consensus 7 mkI~vIGlGyvGlpmA~~la~-------~~~V~g~D~~-~~~ve~l~-~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~a 77 (425)
T PRK15182 7 VKIAIIGLGYVGLPLAVEFGK-------SRQVVGFDVN-KKRILELK-NGVDVNLETTEEELREARYLKFTSEIEKIKEC 77 (425)
T ss_pred CeEEEECcCcchHHHHHHHhc-------CCEEEEEeCC-HHHHHHHH-CcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCC
Confidence 799999999999999999764 6777655544 43344333 443200 00133445678999
Q ss_pred CeEEEeccch----------HHHHHHHHHHhcCCCCcEEEEecCch----hh----hhhc-ccccCCCCccEEEe---cc
Q 007951 180 DLVLLLISDA----------AQADNYEKIFSCMKPNSILGLSHGFL----LG----HLQS-MGLDFPKNIGVIAV---CP 237 (583)
Q Consensus 180 DIVILavpd~----------a~~~Vl~eI~~~Lk~GaiL~~a~G~~----i~----~ie~-~~i~~p~dv~VI~v---~P 237 (583)
|+||+|+|.. ......+.|.+++++|++|++.+-+. -. .+++ .++.. .-++..+ .|
T Consensus 78 dvvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~--~~~~~~~~~PE~ 155 (425)
T PRK15182 78 NFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTF--NQDFYVGYSPER 155 (425)
T ss_pred CEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCc--CCCeeEeeCCCc
Confidence 9999999954 22223446899999999887654432 11 1211 11221 1123333 33
Q ss_pred CCCchhhHHhHhccccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCc-ccccchhhhhhhhhhhhhhhHhhHHHHH
Q 007951 238 KGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPF-TFATTLEQEYRSDIFGERGILLGAVHGI 316 (583)
Q Consensus 238 ngPg~~vR~lf~~G~e~~G~Gv~aliAv~qd~sgeale~a~ala~aIG~~~-vieTtf~eE~~sDlfgeqtvLsG~~pAl 316 (583)
-.+|..+.+.. -.+- +.... +.+..+.+..+...+.... +..|+. .+-+.-.+-+.+ +...--++
T Consensus 156 v~~G~a~~~~~---------~~~r-iv~G~--~~~~~~~~~~ly~~~~~~~~~~~~~~-~~AE~~Kl~~N~-~~av~Ia~ 221 (425)
T PRK15182 156 INPGDKKHRLT---------NIKK-ITSGS--TAQIAELIDEVYQQIISAGTYKAESI-KVAEAAKVIENT-QRDLNIAL 221 (425)
T ss_pred CCCCccccccc---------CCCe-EEECC--CHHHHHHHHHHHHHHhhcCcEEecCH-HHHHHHHHHHHH-HHHHHHHH
Confidence 44444421111 1233 33343 4667788888998886322 222222 222222222222 23333347
Q ss_pred HHHHHHHHHHcCCCHHHHHHH
Q 007951 317 VESLFRRFTENGMNEDLAYKN 337 (583)
Q Consensus 317 ieAl~d~~Ve~Gl~~e~A~~~ 337 (583)
+.-++..+.+.|++..+.+.-
T Consensus 222 ~NE~a~lae~~GiD~~~v~~a 242 (425)
T PRK15182 222 VNELAIIFNRLNIDTEAVLRA 242 (425)
T ss_pred HHHHHHHHHHhCcCHHHHHHH
Confidence 777788888899999876654
No 107
>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase. This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.
Probab=98.60 E-value=3e-06 Score=87.46 Aligned_cols=199 Identities=17% Similarity=0.217 Sum_probs=140.1
Q ss_pred HcCceecCCCcCCHhhhhccCCeEEEeccchH-HHHHHHHHHhcCCCCcEEEEecCch---hhh-hhcccccCCCCccEE
Q 007951 159 AAGFTEENGTLGDIYETISGSDLVLLLISDAA-QADNYEKIFSCMKPNSILGLSHGFL---LGH-LQSMGLDFPKNIGVI 233 (583)
Q Consensus 159 ~~G~~~~d~t~~d~~Eav~~ADIVILavpd~a-~~~Vl~eI~~~Lk~GaiL~~a~G~~---i~~-ie~~~i~~p~dv~VI 233 (583)
..|+.. +.|..|+++++|++|+-+|-.. +.+++++|.+++++|++|..+.-++ +.+ ++. +. ++|+.|.
T Consensus 124 daGvkV----tsDD~EAv~~aei~I~ftPfG~~q~~Iikkii~~lpEgAII~~tCTIpt~~ly~ilE~--l~-R~DvgVs 196 (340)
T TIGR01723 124 DLGLKV----TTDDREAVEDADIIITWLPKGNKQPDIIKKFIDDIPEGAIVTHACTIPTTKFAKIFED--LG-REDLNVT 196 (340)
T ss_pred HcCceE----ecCcHHHhcCCCEEEEEcCCCCCchHHHHHHHhhCCCCCEEeccccCChHHHHHHHHh--hC-cccCCee
Confidence 568876 6788899999999999999766 7899999999999999998776654 212 222 22 5899999
Q ss_pred EeccCCCchhhHHhHhccccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC-cccccchhhhhhhhhhhhhhhHhhH
Q 007951 234 AVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP-FTFATTLEQEYRSDIFGERGILLGA 312 (583)
Q Consensus 234 ~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv~qd~sgeale~a~ala~aIG~~-~vieTtf~eE~~sDlfgeqtvLsG~ 312 (583)
..||-+ .+.. .|--+ + ...-+++++++....|++.+|.. +++. .++.+..+-+|-.
T Consensus 197 S~HPaa-VPgt------------~~q~Y-i-~egyAtEEqI~klveL~~sa~k~ay~~P--------A~LvspV~DMgS~ 253 (340)
T TIGR01723 197 SYHPGC-VPEM------------KGQVY-I-AEGYASEEAVNKLYELGKKARGKAFKMP--------ANLLGPVCDMCSA 253 (340)
T ss_pred ccCCCC-CCCC------------CCceE-e-ecccCCHHHHHHHHHHHHHhCCCeeecc--------hhhccchhhHHHH
Confidence 999932 2221 12222 2 36678999999999999999975 2222 2455555555555
Q ss_pred HHH----HHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhcCcchhhhhhhhhcccchhHHHHHHH
Q 007951 313 VHG----IVESLFRRFTE-NGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYE 387 (583)
Q Consensus 313 ~pA----lieAl~d~~Ve-~Gl~~e~A~~~~~q~l~Glia~li~e~G~~~m~d~vS~~~~aeyg~~~~~~~~p~~~~m~e 387 (583)
+.+ .+..-++..++ .|-|.+.+-..+.++++. ++.|+.++|+..|.+.+... +--|.+-|--..|.-+++..
T Consensus 254 VTAv~~aGiL~Y~~~~t~IlgAP~~miq~qa~eaL~t-masLme~~GI~gm~~aLnPe--aL~~tAdSM~~~~~q~~L~~ 330 (340)
T TIGR01723 254 VTAIVYAGLLAYRDAVTKILGAPADFAQMMADEALTQ-IHNLMEEKGIDKMEEALDPA--ALLGTADSMNFGPLADILPT 330 (340)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHhcCHH--HHhhhhhhcccchHHHHHHH
Confidence 555 34555666665 599999999999999875 99999999999999998762 22333222223444445554
Q ss_pred HHH
Q 007951 388 CYE 390 (583)
Q Consensus 388 ~~~ 390 (583)
.++
T Consensus 331 aL~ 333 (340)
T TIGR01723 331 ALE 333 (340)
T ss_pred HHH
Confidence 444
No 108
>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=98.59 E-value=2.9e-06 Score=87.48 Aligned_cols=174 Identities=17% Similarity=0.185 Sum_probs=129.6
Q ss_pred HcCceecCCCcCCHhhhhccCCeEEEeccchH-HHHHHHHHHhcCCCCcEEEEecCch---hhh-hhcccccCCCCccEE
Q 007951 159 AAGFTEENGTLGDIYETISGSDLVLLLISDAA-QADNYEKIFSCMKPNSILGLSHGFL---LGH-LQSMGLDFPKNIGVI 233 (583)
Q Consensus 159 ~~G~~~~d~t~~d~~Eav~~ADIVILavpd~a-~~~Vl~eI~~~Lk~GaiL~~a~G~~---i~~-ie~~~i~~p~dv~VI 233 (583)
..|+.. +.|..|+++++|++|+-+|-.. +.+++++|.+++++|++|....-++ +.+ ++. .=++|+.|.
T Consensus 126 daGvkV----tsDD~EAvk~aei~I~ftPfG~~t~~Iikki~~~ipEgAII~~tCTIpt~~ly~~le~---l~R~DvgIs 198 (342)
T PRK00961 126 DLGLKV----TTDDREAVADADIVITWLPKGGMQPDIIEKFADDIKEGAIVTHACTIPTTKFAKIFKD---LGRDDLNVT 198 (342)
T ss_pred HcCceE----ecCcHHHhcCCCEEEEecCCCCCchHHHHHHHhhCCCCCEEeccccCCHHHHHHHHHH---hCcccCCee
Confidence 468876 6778899999999999999766 7899999999999999998776654 222 222 226899999
Q ss_pred EeccCC-CchhhHHhHhccccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC-cccccchhhhhhhhhhhhhhhHhh
Q 007951 234 AVCPKG-MGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP-FTFATTLEQEYRSDIFGERGILLG 311 (583)
Q Consensus 234 ~v~Png-Pg~~vR~lf~~G~e~~G~Gv~aliAv~qd~sgeale~a~ala~aIG~~-~vieTtf~eE~~sDlfgeqtvLsG 311 (583)
..||-+ ||+. | -.. ++ ..-+++++++....|++..|.. +++. .++.+..+-+|-
T Consensus 199 S~HPaaVPgt~-------G-------q~~-i~-egyAtEEqI~klveL~~sa~k~ay~~P--------A~lvspV~DMgS 254 (342)
T PRK00961 199 SYHPGAVPEMK-------G-------QVY-IA-EGYADEEAVEKLYEIGKKARGNAFKMP--------ANLIGPVCDMCS 254 (342)
T ss_pred ccCCCCCCCCC-------C-------cee-cc-cccCCHHHHHHHHHHHHHhCCCeeecc--------hhhcchhhhHHH
Confidence 999932 2222 2 222 22 4467899999999999999975 2232 245555555555
Q ss_pred HHHH----HHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhcCc
Q 007951 312 AVHG----IVESLFRRFTE-NGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSG 364 (583)
Q Consensus 312 ~~pA----lieAl~d~~Ve-~Gl~~e~A~~~~~q~l~Glia~li~e~G~~~m~d~vS~ 364 (583)
.+.+ .+..-++.+++ .|-|.+.+-..+.+++.. ++.|+.++|+.+|.+.+..
T Consensus 255 ~VTAv~~aGiL~Y~~~~tqIlgAP~~mie~qa~eaL~t-masLme~~GI~gm~~aLnP 311 (342)
T PRK00961 255 AVTAIVYAGILAYRDAVTQILGAPADFAQMMADEALTQ-ITALMREEGIDNMEEALDP 311 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-HHHHHHHhhHhHHHHhcCH
Confidence 5555 34555666665 599999999999999875 9999999999999999876
No 109
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=98.59 E-value=1.5e-06 Score=100.89 Aligned_cols=215 Identities=11% Similarity=0.134 Sum_probs=136.1
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcc----------cHHHHHHcCceecC---------CCc
Q 007951 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR----------SFAEARAAGFTEEN---------GTL 169 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~----------s~~~A~~~G~~~~d---------~t~ 169 (583)
..|++|+|||.|.||..+|..+..+ |++|++.+...+. .+++..+.|-.... ...
T Consensus 333 ~~i~~v~ViGaG~MG~gIA~~~a~~------G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~ 406 (737)
T TIGR02441 333 RPVKTLAVLGAGLMGAGIAQVSVDK------GLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPT 406 (737)
T ss_pred CcccEEEEECCCHhHHHHHHHHHhC------CCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe
Confidence 4568999999999999999999988 9998876654321 11222222211000 002
Q ss_pred CCHhhhhccCCeEEEeccchHHH--HHHHHHHhcCCCCcEEE-EecCchhhhhhcccccCCCCccEEEeccCCCchhhHH
Q 007951 170 GDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRR 246 (583)
Q Consensus 170 ~d~~Eav~~ADIVILavpd~a~~--~Vl~eI~~~Lk~GaiL~-~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~ 246 (583)
.++ +.+++||+||=+++.+.-. +++.++.+.++++++|. -++++.+..+.. .....-+||..|+=.|.+.++
T Consensus 407 ~~~-~~~~~aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~---~~~~p~r~ig~Hff~P~~~m~- 481 (737)
T TIGR02441 407 LDY-SGFKNADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAA---VSSRPEKVIGMHYFSPVDKMQ- 481 (737)
T ss_pred CCH-HHhccCCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh---hcCCccceEEEeccCCcccCc-
Confidence 344 4679999999999976664 69999999999999874 678888877765 223335799999988887731
Q ss_pred hHhccccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhHhhHHHH-HHHHHHHHHH
Q 007951 247 LYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG-IVESLFRRFT 325 (583)
Q Consensus 247 lf~~G~e~~G~Gv~aliAv~qd~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvLsG~~pA-lieAl~d~~V 325 (583)
.-- |.++...+.+.++.+.+++..+|..-++- .+ .. +-+.+=+.. ++..+ -.++
T Consensus 482 ------------LvE-vv~g~~Ts~~~~~~~~~~~~~lgk~pv~v----~d--~p-----GFi~NRi~~~~~~ea-~~lv 536 (737)
T TIGR02441 482 ------------LLE-IITHDGTSKDTLASAVAVGLKQGKVVIVV----KD--GP-----GFYTTRCLGPMLAEV-IRLL 536 (737)
T ss_pred ------------eEE-EeCCCCCCHHHHHHHHHHHHHCCCeEEEE----CC--cC-----CchHHHHHHHHHHHH-HHHH
Confidence 111 45577889999999999999999642111 11 11 112222222 22222 2467
Q ss_pred HcCCCHHHHHHHHHHHH---HHHHHHHHHHhcHHHHHHh
Q 007951 326 ENGMNEDLAYKNTVECI---TGIISKIISTQGMLAVYNS 361 (583)
Q Consensus 326 e~Gl~~e~A~~~~~q~l---~Glia~li~e~G~~~m~d~ 361 (583)
+.|+++++-=.. +... +| --.++-..|++.+++.
T Consensus 537 ~eGv~~~~ID~a-~~~~G~p~G-P~~l~D~vGld~~~~v 573 (737)
T TIGR02441 537 QEGVDPKKLDKL-TTKFGFPVG-AATLADEVGVDVAEHV 573 (737)
T ss_pred HcCCCHHHHHHH-HHHcCCCCC-HHHHHHHhhHHHHHHH
Confidence 889988654443 2221 13 2355556666544443
No 110
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=98.58 E-value=1.4e-07 Score=105.19 Aligned_cols=149 Identities=17% Similarity=0.155 Sum_probs=98.1
Q ss_pred eecccccccc-chhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCH
Q 007951 94 VRGGRDLFNL-LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172 (583)
Q Consensus 94 ~~~~r~~f~~-~~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~ 172 (583)
++.|+|.-.. ....|.| |+|||||+|+||.++|+.|+.. |.+|+++++.. ..+.+.+.|+.. ..+.
T Consensus 121 ~~~g~W~~~~~~g~~l~g-ktvgIiG~G~IG~~vA~~l~~f------G~~V~~~d~~~--~~~~~~~~g~~~----~~~l 187 (525)
T TIGR01327 121 LKEGEWDRKAFMGTELYG-KTLGVIGLGRIGSIVAKRAKAF------GMKVLAYDPYI--SPERAEQLGVEL----VDDL 187 (525)
T ss_pred HHcCCccccccCccccCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEECCCC--ChhHHHhcCCEE----cCCH
Confidence 3445664221 2356899 9999999999999999999977 88887665532 234455667653 3579
Q ss_pred hhhhccCCeEEEeccchHH-HHHHH-HHHhcCCCCcEEEEe-cCch------hhhhhcccccCCCCccEEEeccCCCchh
Q 007951 173 YETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLS-HGFL------LGHLQSMGLDFPKNIGVIAVCPKGMGPS 243 (583)
Q Consensus 173 ~Eav~~ADIVILavpd~a~-~~Vl~-eI~~~Lk~GaiL~~a-~G~~------i~~ie~~~i~~p~dv~VI~v~PngPg~~ 243 (583)
+|++++||+|++++|.... ..++. +....||+|++|+.+ -|-. +.-+++..+. ...+||....|. +.+
T Consensus 188 ~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~-gAaLDVf~~EP~-~~~- 264 (525)
T TIGR01327 188 DELLARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALEEGHVR-AAALDVFEKEPP-TDN- 264 (525)
T ss_pred HHHHhhCCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcCCCceeCHHHHHHHHHcCCee-EEEEecCCCCCC-CCC-
Confidence 9999999999999996644 45664 577899999988755 3321 2233332221 234666666662 222
Q ss_pred hHHhHhccccccCCCceEEEeecCC
Q 007951 244 VRRLYVQGKEINGAGINSSFAVHQD 268 (583)
Q Consensus 244 vR~lf~~G~e~~G~Gv~aliAv~qd 268 (583)
.++.- -+.+++||-.
T Consensus 265 --pL~~~--------~nvi~TPHia 279 (525)
T TIGR01327 265 --PLFDL--------DNVIATPHLG 279 (525)
T ss_pred --hhhcC--------CCeEECCCcc
Confidence 12322 4677888874
No 111
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=98.56 E-value=2.1e-07 Score=98.10 Aligned_cols=156 Identities=17% Similarity=0.206 Sum_probs=99.4
Q ss_pred eeeccccccc----cchhhhcCCCEEEEEccchhHHHHHHHHH-HhhhhhcCCceEEEEecCCcccHHHHHHcCceecCC
Q 007951 93 IVRGGRDLFN----LLPDAFNGINQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENG 167 (583)
Q Consensus 93 v~~~~r~~f~----~~~~~l~gikkIgIIG~G~mG~A~A~nLr-dsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~ 167 (583)
-++.|+|... .....|.| +++||||+|++|..+|+.++ .- |.+|++.++... .+.....|..
T Consensus 124 ~~~~g~w~~~~~~~~~g~~L~g-ktvGIiG~G~IG~~va~~l~~~f------gm~V~~~~~~~~--~~~~~~~~~~---- 190 (323)
T PRK15409 124 RVKAGEWTASIGPDWFGTDVHH-KTLGIVGMGRIGMALAQRAHFGF------NMPILYNARRHH--KEAEERFNAR---- 190 (323)
T ss_pred HHHcCCCcccCccccccCCCCC-CEEEEEcccHHHHHHHHHHHhcC------CCEEEEECCCCc--hhhHHhcCcE----
Confidence 3456667522 12357899 99999999999999999987 43 888776554321 2223345554
Q ss_pred CcCCHhhhhccCCeEEEeccchHH-HHHHH-HHHhcCCCCcEEE-EecCch------hhhhhcccccCCCCccEEEeccC
Q 007951 168 TLGDIYETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILG-LSHGFL------LGHLQSMGLDFPKNIGVIAVCPK 238 (583)
Q Consensus 168 t~~d~~Eav~~ADIVILavpd~a~-~~Vl~-eI~~~Lk~GaiL~-~a~G~~------i~~ie~~~i~~p~dv~VI~v~Pn 238 (583)
..+.+|++++||+|++++|-... ..++. +....||+|++++ .+-|-. +.-+++..+. ....||..-.|-
T Consensus 191 -~~~l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~-gAaLDVf~~EP~ 268 (323)
T PRK15409 191 -YCDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIH-AAGLDVFEQEPL 268 (323)
T ss_pred -ecCHHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCee-EEEeecCCCCCC
Confidence 45899999999999999995554 45665 6888999999877 444421 2334332221 235677766664
Q ss_pred CCchhhHHhHhccccccCCCceEEEeecCC-CCHHHH
Q 007951 239 GMGPSVRRLYVQGKEINGAGINSSFAVHQD-VDGRAT 274 (583)
Q Consensus 239 gPg~~vR~lf~~G~e~~G~Gv~aliAv~qd-~sgeal 274 (583)
.+.+. ++. =-|.+++||-. .+.++.
T Consensus 269 ~~~~p---L~~--------~~nvilTPHia~~t~e~~ 294 (323)
T PRK15409 269 SVDSP---LLS--------LPNVVAVPHIGSATHETR 294 (323)
T ss_pred CCCch---hhc--------CCCEEEcCcCCCCcHHHH
Confidence 32322 222 14778888863 344443
No 112
>PLN02928 oxidoreductase family protein
Probab=98.55 E-value=4.2e-07 Score=96.69 Aligned_cols=162 Identities=22% Similarity=0.229 Sum_probs=98.3
Q ss_pred eccccccccchhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHH--H----cCceecCCC
Q 007951 95 RGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR--A----AGFTEENGT 168 (583)
Q Consensus 95 ~~~r~~f~~~~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~--~----~G~~~~d~t 168 (583)
+.|+|.-. ....+.| ++|||||+|.||..+|+.|+.. |.+|++.++...+...... . ..+......
T Consensus 145 ~~~~w~~~-~~~~l~g-ktvGIiG~G~IG~~vA~~l~af------G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (347)
T PLN02928 145 KARRLGEP-IGDTLFG-KTVFILGYGAIGIELAKRLRPF------GVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGG 216 (347)
T ss_pred HcCCcccc-cccCCCC-CEEEEECCCHHHHHHHHHHhhC------CCEEEEECCCCChhhhhhhccccccccccccccCc
Confidence 44555422 2356899 9999999999999999999876 8888776654221111100 0 000000012
Q ss_pred cCCHhhhhccCCeEEEeccchHH-HHHHH-HHHhcCCCCcEEEEe-cCch------hhhhhcccccCCCCccEEEeccCC
Q 007951 169 LGDIYETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLS-HGFL------LGHLQSMGLDFPKNIGVIAVCPKG 239 (583)
Q Consensus 169 ~~d~~Eav~~ADIVILavpd~a~-~~Vl~-eI~~~Lk~GaiL~~a-~G~~------i~~ie~~~i~~p~dv~VI~v~Png 239 (583)
..+.+|++++||+|++++|-... ..++. +....||+|++|+.+ -|-. +.-+++..+. ...+||....|--
T Consensus 217 ~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~-gAaLDV~~~EP~~ 295 (347)
T PLN02928 217 HEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLG-GLAIDVAWSEPFD 295 (347)
T ss_pred ccCHHHHHhhCCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCee-EEEEccCCCCCCC
Confidence 45889999999999999995544 45665 688899999988744 4421 2333332221 2456777777743
Q ss_pred CchhhHHhHhccccccCCCceEEEeecCC-CCHHHHHH
Q 007951 240 MGPSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATNV 276 (583)
Q Consensus 240 Pg~~vR~lf~~G~e~~G~Gv~aliAv~qd-~sgeale~ 276 (583)
+.+. ++.. -+.+++||-. .+.+..+.
T Consensus 296 ~~~p---L~~~--------~nviiTPHia~~t~~~~~~ 322 (347)
T PLN02928 296 PDDP---ILKH--------PNVIITPHVAGVTEYSYRS 322 (347)
T ss_pred CCCh---hhcC--------CCEEECCcCCCChHHHHHH
Confidence 3332 2221 4678899873 44444433
No 113
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=98.55 E-value=1.8e-07 Score=104.41 Aligned_cols=147 Identities=18% Similarity=0.155 Sum_probs=98.5
Q ss_pred ecccccccc-chhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHh
Q 007951 95 RGGRDLFNL-LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173 (583)
Q Consensus 95 ~~~r~~f~~-~~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~ 173 (583)
+.|+|.-.. ....|.| |+|||||+|+||..+|+.|+.. |.+|+++++.. ..+.+...|+.. .+.+
T Consensus 124 ~~g~W~~~~~~g~~l~g-ktvgIiG~G~IG~~vA~~l~~f------G~~V~~~d~~~--~~~~~~~~g~~~-----~~l~ 189 (526)
T PRK13581 124 KAGKWERKKFMGVELYG-KTLGIIGLGRIGSEVAKRAKAF------GMKVIAYDPYI--SPERAAQLGVEL-----VSLD 189 (526)
T ss_pred HcCCCCccCccccccCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEECCCC--ChhHHHhcCCEE-----EcHH
Confidence 456664321 2356889 9999999999999999999987 88887666542 234455667763 3899
Q ss_pred hhhccCCeEEEeccchHH-HHHHH-HHHhcCCCCcEEEEe-cCch------hhhhhcccccCCCCccEEEeccCCCchhh
Q 007951 174 ETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLS-HGFL------LGHLQSMGLDFPKNIGVIAVCPKGMGPSV 244 (583)
Q Consensus 174 Eav~~ADIVILavpd~a~-~~Vl~-eI~~~Lk~GaiL~~a-~G~~------i~~ie~~~i~~p~dv~VI~v~PngPg~~v 244 (583)
|++++||+|++++|.... ..++. +....||+|++|+.+ -|-. +..+++..+. ....||....|. |.+.
T Consensus 190 ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~-gAaLDVf~~EP~-~~~p- 266 (526)
T PRK13581 190 ELLARADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCARGGIIDEAALAEALKSGKVA-GAALDVFEKEPP-TDSP- 266 (526)
T ss_pred HHHhhCCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECCCCceeCHHHHHHHHhcCCee-EEEEecCCCCCC-CCch-
Confidence 999999999999997654 45664 688999999988754 3321 2233332222 234666666662 2222
Q ss_pred HHhHhccccccCCCceEEEeecCC
Q 007951 245 RRLYVQGKEINGAGINSSFAVHQD 268 (583)
Q Consensus 245 R~lf~~G~e~~G~Gv~aliAv~qd 268 (583)
++.- -+.+++||-.
T Consensus 267 --L~~~--------~nvilTPHia 280 (526)
T PRK13581 267 --LFEL--------PNVVVTPHLG 280 (526)
T ss_pred --hhcC--------CCeeEcCccc
Confidence 2322 3677888874
No 114
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=98.54 E-value=2.5e-07 Score=97.14 Aligned_cols=147 Identities=14% Similarity=0.146 Sum_probs=92.5
Q ss_pred eccccccccchhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhh
Q 007951 95 RGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE 174 (583)
Q Consensus 95 ~~~r~~f~~~~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~E 174 (583)
+.|+|.... ...++| ++|||||+|+||..+|+.|+.. |.+|++..+..++ . .++.. ..+..+.++
T Consensus 122 ~~~~w~~~~-~~~l~g-~tvgIvG~G~IG~~vA~~l~af------G~~V~~~~~~~~~-~-----~~~~~-~~~~~~l~e 186 (312)
T PRK15469 122 NSSHWQPLP-EYHRED-FTIGILGAGVLGSKVAQSLQTW------GFPLRCWSRSRKS-W-----PGVQS-FAGREELSA 186 (312)
T ss_pred HhCCcCCCC-CCCcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCCCC-C-----CCcee-ecccccHHH
Confidence 445664321 245789 9999999999999999999977 9988776654321 1 12221 011357889
Q ss_pred hhccCCeEEEeccchHH-HHHHH-HHHhcCCCCcEEEEe-cCch------hhhhhcccccCCCCccEEEeccCCCchhhH
Q 007951 175 TISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLS-HGFL------LGHLQSMGLDFPKNIGVIAVCPKGMGPSVR 245 (583)
Q Consensus 175 av~~ADIVILavpd~a~-~~Vl~-eI~~~Lk~GaiL~~a-~G~~------i~~ie~~~i~~p~dv~VI~v~PngPg~~vR 245 (583)
++++||+|++++|.... ..++. +....||+|++|+.+ =|-. +..+++..+. ....||..-.|--+.+.
T Consensus 187 ~l~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i~-gaalDVf~~EPl~~~~p-- 263 (312)
T PRK15469 187 FLSQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVK-GAMLDVFSREPLPPESP-- 263 (312)
T ss_pred HHhcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcCCee-eEEecCCCCCCCCCCCh--
Confidence 99999999999996655 45665 588899999988744 3321 2334332221 22456665555321221
Q ss_pred HhHhccccccCCCceEEEeecCC
Q 007951 246 RLYVQGKEINGAGINSSFAVHQD 268 (583)
Q Consensus 246 ~lf~~G~e~~G~Gv~aliAv~qd 268 (583)
++.. -|.+++||-.
T Consensus 264 -l~~~--------~nvi~TPHia 277 (312)
T PRK15469 264 -LWQH--------PRVAITPHVA 277 (312)
T ss_pred -hhcC--------CCeEECCcCC
Confidence 2221 4677888864
No 115
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=98.53 E-value=9.4e-08 Score=88.17 Aligned_cols=100 Identities=18% Similarity=0.120 Sum_probs=67.6
Q ss_pred hcCCCEEEEEccchhHHHHHHHHHHhhhhhcCC-ceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEec
Q 007951 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (583)
Q Consensus 108 l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G-~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILav 186 (583)
+++ ++|+|||+|.||.++++.|++. | .++.+.++..++..+.+.+.+.........+..++++++|+||+++
T Consensus 17 ~~~-~~i~iiG~G~~g~~~a~~l~~~------g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~ 89 (155)
T cd01065 17 LKG-KKVLILGAGGAARAVAYALAEL------GAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTT 89 (155)
T ss_pred CCC-CEEEEECCcHHHHHHHHHHHHC------CCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCc
Confidence 566 8999999999999999999987 6 5677776654444444554443100001456777789999999999
Q ss_pred cchHH-HHHHHHHHhcCCCCcEEEEecCc
Q 007951 187 SDAAQ-ADNYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 187 pd~a~-~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
|+..+ .+-.......+++|++|+++.-.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~v~D~~~~ 118 (155)
T cd01065 90 PVGMKPGDELPLPPSLLKPGGVVYDVVYN 118 (155)
T ss_pred CCCCCCCCCCCCCHHHcCCCCEEEEcCcC
Confidence 99886 11111112346889998887544
No 116
>PF14748 P5CR_dimer: Pyrroline-5-carboxylate reductase dimerisation; PDB: 2RCY_D 3TRI_A 2IZZ_B 2GR9_B 2GRA_B 2GER_C 1YQG_A 2AG8_A 3GT0_A 2AMF_E ....
Probab=98.51 E-value=3.6e-07 Score=81.84 Aligned_cols=67 Identities=18% Similarity=0.273 Sum_probs=58.6
Q ss_pred hhhhhhhhhhHhhHHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcH--HHHHHhcCcch
Q 007951 299 RSDIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGM--LAVYNSFSGED 366 (583)
Q Consensus 299 ~sDlfgeqtvLsG~~pA----lieAl~d~~Ve~Gl~~e~A~~~~~q~l~Glia~li~e~G~--~~m~d~vS~~~ 366 (583)
++++|+..++++||+|| +++++.+.+++.|+++++|.+++.|++.| .++|+.+++. ..+++.|+.+.
T Consensus 2 ~E~~~d~~talsGsgpA~~~~~~eal~~a~v~~Gl~~~~A~~lv~~t~~G-~a~ll~~~~~~~~~l~~~v~tPg 74 (107)
T PF14748_consen 2 DEDQFDAATALSGSGPAYFFLFIEALADAAVAQGLPREEARKLVAQTFIG-AAKLLEESGRSPAELRDEVTTPG 74 (107)
T ss_dssp SGGGHHHHHHHCTTHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHH-HHHHHHHCSS-HHHHHHHHS-TT
T ss_pred CHHHHhHHHHHhccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH-HHHHHHccCCCHHHHhhhccCCC
Confidence 34788899999999999 79999999999999999999999999999 9999998885 89999999764
No 117
>PRK06932 glycerate dehydrogenase; Provisional
Probab=98.48 E-value=9.7e-07 Score=92.68 Aligned_cols=146 Identities=18% Similarity=0.190 Sum_probs=93.3
Q ss_pred hhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
..++| ++|||||+|.+|..+|+.++.- |.+|++..+.... ..... ..+.+|++++||+|+++
T Consensus 143 ~~l~g-ktvgIiG~G~IG~~va~~l~~f------g~~V~~~~~~~~~------~~~~~-----~~~l~ell~~sDiv~l~ 204 (314)
T PRK06932 143 TDVRG-STLGVFGKGCLGTEVGRLAQAL------GMKVLYAEHKGAS------VCREG-----YTPFEEVLKQADIVTLH 204 (314)
T ss_pred cccCC-CEEEEECCCHHHHHHHHHHhcC------CCEEEEECCCccc------ccccc-----cCCHHHHHHhCCEEEEc
Confidence 46899 9999999999999999999865 8887655432111 11111 34789999999999999
Q ss_pred ccchHH-HHHHH-HHHhcCCCCcEEE-EecCch------hhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccC
Q 007951 186 ISDAAQ-ADNYE-KIFSCMKPNSILG-LSHGFL------LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEING 256 (583)
Q Consensus 186 vpd~a~-~~Vl~-eI~~~Lk~GaiL~-~a~G~~------i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G 256 (583)
+|-... ..++. +....||+|++|+ .+-|-. +..+++..+. ....||....|-.+.+.....+.+
T Consensus 205 ~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g~i~-gAaLDV~~~EP~~~~~pl~~~~~~------ 277 (314)
T PRK06932 205 CPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALENGKIA-GAALDVLVKEPPEKDNPLIQAAKR------ 277 (314)
T ss_pred CCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCcc-EEEEecCCCCCCCCCChhhHhhcC------
Confidence 994444 45665 6788999999877 555532 3334432222 345677777774433332111111
Q ss_pred CCceEEEeecCC-CCHHHHHHH
Q 007951 257 AGINSSFAVHQD-VDGRATNVA 277 (583)
Q Consensus 257 ~Gv~aliAv~qd-~sgeale~a 277 (583)
=-|.+++||-. .+.++.+..
T Consensus 278 -~pnvilTPHia~~t~e~~~~~ 298 (314)
T PRK06932 278 -LPNLLITPHIAWASDSAVTTL 298 (314)
T ss_pred -CCCEEECCccccCcHHHHHHH
Confidence 13677888863 455555443
No 118
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=98.48 E-value=9e-06 Score=84.64 Aligned_cols=153 Identities=20% Similarity=0.212 Sum_probs=96.6
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceec--CCC-------cCCHhhhhccCCeE
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--NGT-------LGDIYETISGSDLV 182 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~--d~t-------~~d~~Eav~~ADIV 182 (583)
++|+|||.|.||..+|..|.++ |++|.+..|.. .+.-.+.|+... ++. ..+..+....+|+|
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~------g~~V~~~~r~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v 76 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARA------GFDVHFLLRSD---YEAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWV 76 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHC------CCeEEEEEeCC---HHHHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEE
Confidence 7999999999999999999998 99988877753 233445565321 110 11222356789999
Q ss_pred EEeccchHHHHHHHHHHhcCCCCcEE-EEecCchh-hhhhcccccCCCCccEE------EeccCCCchhhHHhHhccccc
Q 007951 183 LLLISDAAQADNYEKIFSCMKPNSIL-GLSHGFLL-GHLQSMGLDFPKNIGVI------AVCPKGMGPSVRRLYVQGKEI 254 (583)
Q Consensus 183 ILavpd~a~~~Vl~eI~~~Lk~GaiL-~~a~G~~i-~~ie~~~i~~p~dv~VI------~v~PngPg~~vR~lf~~G~e~ 254 (583)
|++||-.+..++++.+.+.++++.+| .+.-|+.. ..+.+ .+|+. .|+ .....+|+.+. .
T Consensus 77 ilavK~~~~~~~~~~l~~~~~~~~~iv~lqNG~~~~e~l~~---~~~~~-~v~~g~~~~~a~~~~pg~v~---------~ 143 (313)
T PRK06249 77 LVGLKTTANALLAPLIPQVAAPDAKVLLLQNGLGVEEQLRE---ILPAE-HLLGGLCFICSNRVGPGVIH---------H 143 (313)
T ss_pred EEEecCCChHhHHHHHhhhcCCCCEEEEecCCCCcHHHHHH---HCCCC-cEEEEeeeEeEecCCCeEEE---------E
Confidence 99999888888999999999887754 56667752 23333 33432 233 33445565541 1
Q ss_pred cCCCceEEEeecCCCC-----HHHHHHHHHHHHHhCCC
Q 007951 255 NGAGINSSFAVHQDVD-----GRATNVALGWSVALGSP 287 (583)
Q Consensus 255 ~G~Gv~aliAv~qd~s-----geale~a~ala~aIG~~ 287 (583)
.|.|... +......+ .+..+...+++...|..
T Consensus 144 ~~~g~~~-iG~~~~~~~~~~~~~~~~~l~~~l~~ag~~ 180 (313)
T PRK06249 144 LAYGRVN-LGYHSGPAADDGITARVEEGAALFRAAGID 180 (313)
T ss_pred CCCCcEE-EecCCCCcccchHHHHHHHHHHHHHhCCCC
Confidence 1344433 44332222 35556667788888865
No 119
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.46 E-value=6.6e-06 Score=95.12 Aligned_cols=346 Identities=12% Similarity=0.122 Sum_probs=189.8
Q ss_pred cCCCEEEEEccchhHHHHHHHHH-HhhhhhcCCceEEEEecCCcccHHH-----------HHHcCceecC---------C
Q 007951 109 NGINQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEEN---------G 167 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A~A~nLr-dsl~~~g~G~~ViVg~r~~s~s~~~-----------A~~~G~~~~d---------~ 167 (583)
+.+++|+|||.|.||..+|.-+. .. |++|++.+...+ ..+. ..+.|-.... .
T Consensus 307 ~~i~~v~ViGaG~mG~giA~~~a~~~------G~~V~l~d~~~~-~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~ 379 (708)
T PRK11154 307 RPVNKVGVLGGGLMGGGIAYVTATKA------GLPVRIKDINPQ-GINHALKYSWDLLDKKVKRRHLKPSERDKQMALIS 379 (708)
T ss_pred CcccEEEEECCchhhHHHHHHHHHHc------CCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEE
Confidence 35689999999999999999887 77 999887665432 2222 2222221000 0
Q ss_pred CcCCHhhhhccCCeEEEeccchHH--HHHHHHHHhcCCCCcEEE-EecCchhhhhhcccccCCCCccEEEeccCCCchhh
Q 007951 168 TLGDIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSV 244 (583)
Q Consensus 168 t~~d~~Eav~~ADIVILavpd~a~--~~Vl~eI~~~Lk~GaiL~-~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~v 244 (583)
...+. +++++||+||=++|.+.- .+++.++.++++|+++|. -++++.+..+.+ .....-+|+.+|+=.|.+.+
T Consensus 380 ~~~~~-~~~~~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~---~~~~p~r~ig~Hff~P~~~~ 455 (708)
T PRK11154 380 GTTDY-RGFKHADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAA---AAARPEQVIGLHYFSPVEKM 455 (708)
T ss_pred EeCCh-HHhccCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHH---hcCcccceEEEecCCccccC
Confidence 02344 568999999999997655 369999999999999874 778888877765 22333479999998888773
Q ss_pred HHhHhccccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhHhh-HHHHHHHHHHHH
Q 007951 245 RRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLG-AVHGIVESLFRR 323 (583)
Q Consensus 245 R~lf~~G~e~~G~Gv~aliAv~qd~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvLsG-~~pAlieAl~d~ 323 (583)
+ .-= |.++...+++.++.+.+++..+|...++- .+ .. +-+.+ .+.+++..+. .
T Consensus 456 ~-------------lVE-vv~g~~Ts~~~~~~~~~~~~~~gk~pv~v----~d--~p-----Gfi~nRl~~~~~~EA~-~ 509 (708)
T PRK11154 456 P-------------LVE-VIPHAKTSAETIATTVALAKKQGKTPIVV----RD--GA-----GFYVNRILAPYINEAA-R 509 (708)
T ss_pred c-------------eEE-EECCCCCCHHHHHHHHHHHHHcCCceEEE----ec--cC-----cHHHHHHHHHHHHHHH-H
Confidence 1 112 55688899999999999999999752211 11 11 11222 2223333333 5
Q ss_pred HHHcCCCHHHHHHHHHHHH---HHHHHHHHHHhcHHHHHHhcCcchhhhhhhhhcccchhHHHHHHHHHHhccCChhhhH
Q 007951 324 FTENGMNEDLAYKNTVECI---TGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRS 400 (583)
Q Consensus 324 ~Ve~Gl~~e~A~~~~~q~l---~Glia~li~e~G~~~m~d~vS~~~~aeyg~~~~~~~~p~~~~m~e~~~~I~sG~far~ 400 (583)
+++.|+++++-=.. +..+ .| --.++-..|++.+++.... -...+++. +.|. ..+++. |..|.+.++
T Consensus 510 lv~eGv~~~dID~a-~~~~G~p~G-Pf~~~D~~Gld~~~~i~~~-l~~~~~~~----~~~~-~~l~~~---v~~g~~G~k 578 (708)
T PRK11154 510 LLLEGEPIEHIDAA-LVKFGFPVG-PITLLDEVGIDVGTKIIPI-LEAALGER----FSAP-AAFDKL---LNDDRKGRK 578 (708)
T ss_pred HHHcCCCHHHHHHH-HHHcCCCCC-HHHHHHHhhhHHHHHHHHH-HHHHcCCC----CCCC-HHHHHH---HHCCCCccc
Confidence 67778876543322 2211 13 3345555666554443321 11223332 2221 234443 445666655
Q ss_pred HHHhcccccccCCCCCCcchhhhcChHHHHHHHHHccCCCCCCCCCCc--chhHHHHHHHHHHHHHHHHhCC--Chhhhh
Q 007951 401 VVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLHP--FTAGVYAALMMAQIEILRKKGH--SYSEII 476 (583)
Q Consensus 401 ~~~e~~~~~~~~g~~~~~~~~i~~~~ie~vG~~lR~~~~~gei~~~~~--~~~g~~~~~~~a~~~~l~~~gh--~~se~~ 476 (583)
.++.+|.-.+ + -+.++...-..+-+.++. .+.. .+.| +.+-++.+++---+.+ -++|. ++ |-+
T Consensus 579 ---~g~GfY~y~~-~---~~~~~~~~~~~~~~~~~~-~~~~---~~~~g~i~~Rll~~~~nEa~~l-l~eGvva~~-~dI 645 (708)
T PRK11154 579 ---NGRGFYLYGQ-K---GKKSKKQVDESVYPLLGI-TPQS---RLSANEIAERCVMLMLNEAVRC-LDEGIIRSA-RDG 645 (708)
T ss_pred ---CCceEEECCC-C---cccccccCCHHHHHHhcc-CCCC---CCCHHHHHHHHHHHHHHHHHHH-HHCCCcCCH-HHH
Confidence 2334432211 0 000011111112222211 1110 1222 2233444444444444 45564 55 445
Q ss_pred hhhHHHHhh------hcchhhhhccchhhhhhcchhhh-cccccccc
Q 007951 477 NESVIESVD------SLNPFMHARGVSFMVDNCSTTAR-LGSRKWAP 516 (583)
Q Consensus 477 ne~~~e~~~------sl~p~~~~~g~~~m~~~cs~ta~-~g~~~w~~ 516 (583)
|..+.-.+- =.+.++..-|++-++..+..-++ +|. .|.|
T Consensus 646 D~~~~~G~G~p~~~gGp~~~~D~~Gld~~~~~~~~l~~~~~~-~~~p 691 (708)
T PRK11154 646 DIGAVFGIGFPPFLGGPFRYMDSLGAGEVVAILERLAAQYGD-RFTP 691 (708)
T ss_pred HHHHHhcCCCCCccCCHHHHHHHhCHHHHHHHHHHHHHhcCC-ccCC
Confidence 655554442 22346777899999888887765 464 3544
No 120
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=98.44 E-value=3.3e-06 Score=88.77 Aligned_cols=152 Identities=14% Similarity=0.184 Sum_probs=109.5
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCc----------ccHHHHHHcCceecC---------CCcCC
Q 007951 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----------RSFAEARAAGFTEEN---------GTLGD 171 (583)
Q Consensus 111 ikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s----------~s~~~A~~~G~~~~d---------~t~~d 171 (583)
|+||+|||.|.||+.+|..+... |++|++.+.+.+ ++.++..+.|-..++ ....+
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~------G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~ 76 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALA------GYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTD 76 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhc------CCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCc
Confidence 58999999999999999998877 899888776522 223333444422110 00122
Q ss_pred HhhhhccCCeEEEeccchHH--HHHHHHHHhcCCCCcEE-EEecCchhhhhhcccccCCCCccEEEeccCCCchhhHHhH
Q 007951 172 IYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLY 248 (583)
Q Consensus 172 ~~Eav~~ADIVILavpd~a~--~~Vl~eI~~~Lk~GaiL-~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf 248 (583)
+. ++++||+||=+++-+.- .+++.++-.+.+|+++| +-.+++++..+.+.. . ..-+|+..|+=-|.+.+
T Consensus 77 ~~-~l~~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl~it~ia~~~-~--rper~iG~HFfNP~~~m---- 148 (307)
T COG1250 77 LA-ALKDADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLSITELAEAL-K--RPERFIGLHFFNPVPLM---- 148 (307)
T ss_pred hh-HhccCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCCCHHHHHHHh-C--CchhEEEEeccCCCCcc----
Confidence 22 78999999999995544 46999999999999998 477888877775522 2 22369999998887773
Q ss_pred hccccccCCCceEE-EeecCCCCHHHHHHHHHHHHHhCCC
Q 007951 249 VQGKEINGAGINSS-FAVHQDVDGRATNVALGWSVALGSP 287 (583)
Q Consensus 249 ~~G~e~~G~Gv~al-iAv~qd~sgeale~a~ala~aIG~~ 287 (583)
+.+ +.++...+++.++.+.+++..+|.+
T Consensus 149 -----------~LVEvI~g~~T~~e~~~~~~~~~~~igK~ 177 (307)
T COG1250 149 -----------PLVEVIRGEKTSDETVERVVEFAKKIGKT 177 (307)
T ss_pred -----------eeEEEecCCCCCHHHHHHHHHHHHHcCCC
Confidence 221 3446677889999999999999943
No 121
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=98.41 E-value=1.6e-06 Score=90.07 Aligned_cols=94 Identities=19% Similarity=0.302 Sum_probs=71.0
Q ss_pred hhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEec
Q 007951 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (583)
Q Consensus 107 ~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILav 186 (583)
.++| ++|+|||+|.+|.++|+.|+.. |.+|++..|...+ .+.+.+.|.... ...+..+.++++|+||+++
T Consensus 148 ~l~g-k~v~IiG~G~iG~avA~~L~~~------G~~V~v~~R~~~~-~~~~~~~g~~~~--~~~~l~~~l~~aDiVint~ 217 (287)
T TIGR02853 148 TIHG-SNVMVLGFGRTGMTIARTFSAL------GARVFVGARSSAD-LARITEMGLIPF--PLNKLEEKVAEIDIVINTI 217 (287)
T ss_pred CCCC-CEEEEEcChHHHHHHHHHHHHC------CCEEEEEeCCHHH-HHHHHHCCCeee--cHHHHHHHhccCCEEEECC
Confidence 5678 9999999999999999999987 8888888876433 444555666520 1235678889999999999
Q ss_pred cchHHHHHHHHHHhcCCCCcEEEEecC
Q 007951 187 SDAAQADNYEKIFSCMKPNSILGLSHG 213 (583)
Q Consensus 187 pd~a~~~Vl~eI~~~Lk~GaiL~~a~G 213 (583)
|...+. ++..+.++++++|++.+.
T Consensus 218 P~~ii~---~~~l~~~k~~aliIDlas 241 (287)
T TIGR02853 218 PALVLT---ADVLSKLPKHAVIIDLAS 241 (287)
T ss_pred ChHHhC---HHHHhcCCCCeEEEEeCc
Confidence 875321 346677899999887743
No 122
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=98.40 E-value=5.6e-06 Score=91.37 Aligned_cols=139 Identities=14% Similarity=0.046 Sum_probs=96.6
Q ss_pred hHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHc----CceecCCCcCCHhhhhcc---CCeEEEeccchHH-HH
Q 007951 122 QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----GFTEENGTLGDIYETISG---SDLVLLLISDAAQ-AD 193 (583)
Q Consensus 122 mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~----G~~~~d~t~~d~~Eav~~---ADIVILavpd~a~-~~ 193 (583)
||.+||+||.++ |++|.+++|..++..+..... |+.. ..+++|+++. +|+||+++|+... .+
T Consensus 1 MG~~mA~nL~~~------G~~V~v~nrt~~~~~~l~~~~g~~~g~~~----~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~ 70 (459)
T PRK09287 1 MGKNLALNIASH------GYTVAVYNRTPEKTDEFLAEEGKGKKIVP----AYTLEEFVASLEKPRKILLMVKAGAPVDA 70 (459)
T ss_pred CcHHHHHHHHhC------CCeEEEECCCHHHHHHHHHhhCCCCCeEe----eCCHHHHHhhCCCCCEEEEECCCchHHHH
Confidence 899999999999 999999988766655544432 4554 6788888874 8999999998765 56
Q ss_pred HHHHHHhcCCCCcEEEEecCchhh---hhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEeecCCCC
Q 007951 194 NYEKIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVD 270 (583)
Q Consensus 194 Vl~eI~~~Lk~GaiL~~a~G~~i~---~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv~qd~s 270 (583)
|++++.++|.+|.+|++.+-.... .... . .-.+++.+| -+|-.-|.. .- -.|. + +-+.. +
T Consensus 71 Vi~~l~~~l~~GdiiID~gn~~~~~t~~~~~-~-l~~~Gi~fv-dapVSGG~~------gA----~~G~-s-iM~GG--~ 133 (459)
T PRK09287 71 VIEQLLPLLEKGDIIIDGGNSNYKDTIRREK-E-LAEKGIHFI-GMGVSGGEE------GA----LHGP-S-IMPGG--Q 133 (459)
T ss_pred HHHHHHhcCCCCCEEEECCCCCHHHHHHHHH-H-HHhcCCeEE-ecCCCCCHH------HH----hcCC-E-EEEeC--C
Confidence 888999999999999988643211 1111 1 113567766 566222222 00 1354 4 44566 5
Q ss_pred HHHHHHHHHHHHHhCCC
Q 007951 271 GRATNVALGWSVALGSP 287 (583)
Q Consensus 271 geale~a~ala~aIG~~ 287 (583)
.++.+.++-+++.+|..
T Consensus 134 ~~a~~~~~piL~~ia~~ 150 (459)
T PRK09287 134 KEAYELVAPILEKIAAK 150 (459)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 78999999999999963
No 123
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=98.39 E-value=1.2e-06 Score=92.94 Aligned_cols=137 Identities=20% Similarity=0.238 Sum_probs=93.4
Q ss_pred cccccceeeeccccccc---cchhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCc
Q 007951 86 LADRDEYIVRGGRDLFN---LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF 162 (583)
Q Consensus 86 ~~~~~e~v~~~~r~~f~---~~~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~ 162 (583)
|-+-.|++.. |+|... .....++| |+|||+|+|++|..+|++|+.. |..+ .+....+...+.+.+.+.
T Consensus 136 ~~~g~~~~~~-g~w~~~~~~~~g~~~~g-K~vgilG~G~IG~~ia~rL~~F------g~~i-~y~~r~~~~~~~~~~~~~ 206 (336)
T KOG0069|consen 136 FSEGNEMVRN-GGWGWAGGWPLGYDLEG-KTVGILGLGRIGKAIAKRLKPF------GCVI-LYHSRTQLPPEEAYEYYA 206 (336)
T ss_pred hhhhhhhhhc-CCccccCCccccccccC-CEEEEecCcHHHHHHHHhhhhc------ccee-eeecccCCchhhHHHhcc
Confidence 4444554444 456111 12478899 9999999999999999999986 8444 444443445666666665
Q ss_pred eecCCCcCCHhhhhccCCeEEEeccchHHH-HHHH-HHHhcCCCCcEEE-EecCch------hhhhhcccccCCCCccEE
Q 007951 163 TEENGTLGDIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILG-LSHGFL------LGHLQSMGLDFPKNIGVI 233 (583)
Q Consensus 163 ~~~d~t~~d~~Eav~~ADIVILavpd~a~~-~Vl~-eI~~~Lk~GaiL~-~a~G~~------i~~ie~~~i~~p~dv~VI 233 (583)
. ..|.++.+.++|+|+++.|..... .++. ++..+||+|.+|+ .+=|-- ..-+.+. -....+.||.
T Consensus 207 ~-----~~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~sG-~i~~aGlDVf 280 (336)
T KOG0069|consen 207 E-----FVDIEELLANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEALKSG-KIAGAGLDVF 280 (336)
T ss_pred c-----ccCHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHHhcC-Cccccccccc
Confidence 5 358899999999999999977664 5776 6899999999876 554421 2223332 2224577888
Q ss_pred Eecc
Q 007951 234 AVCP 237 (583)
Q Consensus 234 ~v~P 237 (583)
---|
T Consensus 281 ~~EP 284 (336)
T KOG0069|consen 281 EPEP 284 (336)
T ss_pred CCCC
Confidence 7777
No 124
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=98.33 E-value=1.3e-06 Score=94.95 Aligned_cols=127 Identities=22% Similarity=0.249 Sum_probs=83.8
Q ss_pred ecccccccc-chhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHh
Q 007951 95 RGGRDLFNL-LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173 (583)
Q Consensus 95 ~~~r~~f~~-~~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~ 173 (583)
+.|+|.-.. ....|.| |+|||||+|++|..+|+.++.- |.+|+++++... ....++.. ..+.+
T Consensus 135 ~~g~w~~~~~~~~~L~g-ktvGIiG~G~IG~~vA~~~~~f------Gm~V~~~d~~~~-----~~~~~~~~----~~~l~ 198 (409)
T PRK11790 135 HRGGWNKSAAGSFEVRG-KTLGIVGYGHIGTQLSVLAESL------GMRVYFYDIEDK-----LPLGNARQ----VGSLE 198 (409)
T ss_pred HcCcccccccCcccCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEECCCcc-----cccCCcee----cCCHH
Confidence 445664221 2356899 9999999999999999999876 888866554311 11123332 45899
Q ss_pred hhhccCCeEEEeccchH-HHHHHH-HHHhcCCCCcEEE-EecCch------hhhhhcccccCCCCccEEEeccC
Q 007951 174 ETISGSDLVLLLISDAA-QADNYE-KIFSCMKPNSILG-LSHGFL------LGHLQSMGLDFPKNIGVIAVCPK 238 (583)
Q Consensus 174 Eav~~ADIVILavpd~a-~~~Vl~-eI~~~Lk~GaiL~-~a~G~~------i~~ie~~~i~~p~dv~VI~v~Pn 238 (583)
|++++||+|++++|-.. ...++. +....||+|++|+ .+-|-. +..+++..+. ....||....|.
T Consensus 199 ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~-gaalDVf~~EP~ 271 (409)
T PRK11790 199 ELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGTVVDIDALADALKSGHLA-GAAIDVFPVEPK 271 (409)
T ss_pred HHHhhCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHcCCce-EEEEcCCCCCCC
Confidence 99999999999999554 445665 6788999999877 444432 2333332221 234566655563
No 125
>PRK06487 glycerate dehydrogenase; Provisional
Probab=98.32 E-value=1.4e-06 Score=91.49 Aligned_cols=142 Identities=21% Similarity=0.189 Sum_probs=92.1
Q ss_pred hhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
..+.| ++|||||+|.+|..+|+.++.- |.+|+++++.... .+.. ..+.+|++++||+|+++
T Consensus 144 ~~l~g-ktvgIiG~G~IG~~vA~~l~~f------gm~V~~~~~~~~~-------~~~~-----~~~l~ell~~sDiv~l~ 204 (317)
T PRK06487 144 VELEG-KTLGLLGHGELGGAVARLAEAF------GMRVLIGQLPGRP-------ARPD-----RLPLDELLPQVDALTLH 204 (317)
T ss_pred cccCC-CEEEEECCCHHHHHHHHHHhhC------CCEEEEECCCCCc-------cccc-----ccCHHHHHHhCCEEEEC
Confidence 46899 9999999999999999999865 8888765543211 1122 34789999999999999
Q ss_pred ccchHH-HHHHH-HHHhcCCCCcEEE-EecCch------hhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccC
Q 007951 186 ISDAAQ-ADNYE-KIFSCMKPNSILG-LSHGFL------LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEING 256 (583)
Q Consensus 186 vpd~a~-~~Vl~-eI~~~Lk~GaiL~-~a~G~~------i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G 256 (583)
+|-... ..++. +....||+|++++ .+-|-. +.-+++..+. ...+||.-..|-.+.+. ++...
T Consensus 205 lPlt~~T~~li~~~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~-gAaLDVf~~EP~~~~~p---l~~~~----- 275 (317)
T PRK06487 205 CPLTEHTRHLIGARELALMKPGALLINTARGGLVDEQALADALRSGHLG-GAATDVLSVEPPVNGNP---LLAPD----- 275 (317)
T ss_pred CCCChHHhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCee-EEEeecCCCCCCCCCCc---hhhcC-----
Confidence 995544 45665 6888999999877 444431 3334332222 34567777777433332 22100
Q ss_pred CCceEEEeecCC-CCHHHHHH
Q 007951 257 AGINSSFAVHQD-VDGRATNV 276 (583)
Q Consensus 257 ~Gv~aliAv~qd-~sgeale~ 276 (583)
=-|.+++||-. .+.+..+.
T Consensus 276 -~pnvilTPHia~~t~e~~~~ 295 (317)
T PRK06487 276 -IPRLIVTPHSAWGSREARQR 295 (317)
T ss_pred -CCCEEECCccccCCHHHHHH
Confidence 03677888863 34444433
No 126
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.31 E-value=7.8e-06 Score=83.18 Aligned_cols=149 Identities=20% Similarity=0.184 Sum_probs=105.5
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhh---ccCCeEEEeccc
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI---SGSDLVLLLISD 188 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav---~~ADIVILavpd 188 (583)
|+||.||+|.||..+.++|.+. |++++ +++.++...+.+..+|... +.++.|.+ ...-+|-+.+|-
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~------ghdvV-~yD~n~~av~~~~~~ga~~----a~sl~el~~~L~~pr~vWlMvPa 69 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDG------GHDVV-GYDVNQTAVEELKDEGATG----AASLDELVAKLSAPRIVWLMVPA 69 (300)
T ss_pred CcceeeccchhhHHHHHHHHhC------CCeEE-EEcCCHHHHHHHHhcCCcc----ccCHHHHHHhcCCCcEEEEEccC
Confidence 6899999999999999999999 99864 5666677888999999764 55666654 456899999998
Q ss_pred h-HHHHHHHHHHhcCCCCcEEEEecCchhhh-hhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEeec
Q 007951 189 A-AQADNYEKIFSCMKPNSILGLSHGFLLGH-LQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (583)
Q Consensus 189 ~-a~~~Vl~eI~~~Lk~GaiL~~a~G~~i~~-ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv~ 266 (583)
. ....+++++++.|.+|.+|++-.--+.+. +........++++++-+=-.+-..-.+ .|... -+.
T Consensus 70 g~it~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~flD~GTSGG~~G~~-----------~G~~l--MiG 136 (300)
T COG1023 70 GDITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLDVGTSGGVWGAE-----------RGYCL--MIG 136 (300)
T ss_pred CCchHHHHHHHHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCeEEeccCCCCchhhh-----------cCceE--Eec
Confidence 8 45679999999999999999875543221 111011335788888654433211111 23333 344
Q ss_pred CCCCHHHHHHHHHHHHHhCC
Q 007951 267 QDVDGRATNVALGWSVALGS 286 (583)
Q Consensus 267 qd~sgeale~a~ala~aIG~ 286 (583)
. +.++.+...-+|+++--
T Consensus 137 G--~~~a~~~~~pif~~lA~ 154 (300)
T COG1023 137 G--DEEAVERLEPIFKALAP 154 (300)
T ss_pred C--cHHHHHHHHHHHHhhCc
Confidence 4 67899999999999863
No 127
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=98.31 E-value=2.1e-05 Score=85.06 Aligned_cols=92 Identities=12% Similarity=0.097 Sum_probs=62.4
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHH----------------cCceecCCCcCCHhhh
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----------------AGFTEENGTLGDIYET 175 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~----------------~G~~~~d~t~~d~~Ea 175 (583)
|||+|||+|.||..+|..+. . |++|++.+++ +...+...+ .+... ....+..++
T Consensus 1 mkI~VIGlGyvGl~~A~~lA-~------G~~VigvD~d-~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l--~~t~~~~~~ 70 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIA-Q------NHEVVALDIL-PSRVAMLNDRISPIVDKEIQQFLQSDKIHF--NATLDKNEA 70 (388)
T ss_pred CEEEEECCCHHHHHHHHHHH-h------CCcEEEEECC-HHHHHHHHcCCCCCCCcCHHHHHHhCCCcE--EEecchhhh
Confidence 58999999999999996554 5 8887655544 433444332 11111 002346778
Q ss_pred hccCCeEEEeccch-----------HHHHHHHHHHhcCCCCcEEEEecCc
Q 007951 176 ISGSDLVLLLISDA-----------AQADNYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 176 v~~ADIVILavpd~-----------a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
+++||+||+|+|.. ...+++++|.+ +++|++|++.+-+
T Consensus 71 ~~~ad~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv 119 (388)
T PRK15057 71 YRDADYVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKSTV 119 (388)
T ss_pred hcCCCEEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeeec
Confidence 89999999999954 44567788877 7999988765444
No 128
>COG4074 Mth H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=98.30 E-value=3.7e-05 Score=77.51 Aligned_cols=204 Identities=18% Similarity=0.189 Sum_probs=139.4
Q ss_pred HHcCceecCCCcCCHhhhhccCCeEEEecc-chHHHHHHHHHHhcCCCCcEEEEecCchhhhhhccc-ccCCCCccEEEe
Q 007951 158 RAAGFTEENGTLGDIYETISGSDLVLLLIS-DAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMG-LDFPKNIGVIAV 235 (583)
Q Consensus 158 ~~~G~~~~d~t~~d~~Eav~~ADIVILavp-d~a~~~Vl~eI~~~Lk~GaiL~~a~G~~i~~ie~~~-i~~p~dv~VI~v 235 (583)
+..|+.. ..|..|+++++|+||-=.| -..|+++++++.+.+++|+||+.+.-+....+.... -.-+++.+|-..
T Consensus 123 ed~g~~v----ttddreavedad~iitwlpkg~~qpdiikkfiddipegaivthactipttkf~kifed~gredlnvtsy 198 (343)
T COG4074 123 EDMGIVV----TTDDREAVEDADMIITWLPKGGVQPDIIKKFIDDIPEGAIVTHACTIPTTKFKKIFEDMGREDLNVTSY 198 (343)
T ss_pred HHceeEE----ecCcHhhhcCCCeEEEeccCCCCCccHHHHHHhcCCCCceEeeecccchHHHHHHHHHhCccccceecc
Confidence 3467775 5678899999999999887 456789999999999999999988776432111100 012468999999
Q ss_pred ccCCCchhhHHhHhccccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhHhhHHHH
Q 007951 236 CPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG 315 (583)
Q Consensus 236 ~PngPg~~vR~lf~~G~e~~G~Gv~aliAv~qd~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvLsG~~pA 315 (583)
|| +..+++ +|--+ |+ ..-++.++++..-.+.+.--+. .+. ....|.|-.+-+|..+.+
T Consensus 199 hp-g~vpem------------kgqvy-ia-egyaseeavn~lyelg~karg~-afk------~pa~llgpvcdmcsavta 256 (343)
T COG4074 199 HP-GTVPEM------------KGQVY-IA-EGYASEEAVNALYELGEKARGL-AFK------VPAYLLGPVCDMCSAVTA 256 (343)
T ss_pred CC-CCCccc------------cCcEE-Ee-cccccHHHHHHHHHHHHHhhcc-ccc------CcHHhhchHHHHHHHHHH
Confidence 99 334443 34433 44 6677888887776665433221 111 122478888888888888
Q ss_pred HHHHHHHH---HH--HcCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhcCcchhhhhhhhhcccchhHHHHHHHHHH
Q 007951 316 IVESLFRR---FT--ENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYE 390 (583)
Q Consensus 316 lieAl~d~---~V--e~Gl~~e~A~~~~~q~l~Glia~li~e~G~~~m~d~vS~~~~aeyg~~~~~~~~p~~~~m~e~~~ 390 (583)
++-|+.=. .| -.|-|-+.|...+.+.+.+ |++++.+.|++.|-..+.. .+-.|.+-+-.+.|+-+++...++
T Consensus 257 ivyagll~yrdavt~ilgapadfaqmma~eal~q-i~~lmee~gidkmeealdp--aallgtadsmnfgpladilptale 333 (343)
T COG4074 257 IVYAGLLTYRDAVTDILGAPADFAQMMAVEALQQ-IAKLMEEEGIDKMEEALDP--AALLGTADSMNFGPLADILPTALE 333 (343)
T ss_pred HHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH-HHHHHHHhhhhHHHhhcCH--HHhhCccccccccchHHHhHHHHH
Confidence 65554322 22 2599999999999999976 9999999999999999875 233444433345666666655443
No 129
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=98.28 E-value=2.7e-06 Score=81.89 Aligned_cols=95 Identities=23% Similarity=0.278 Sum_probs=67.4
Q ss_pred hhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
-.+.| |++.|+|||..|..+|+.||.. |.+|+|...+ +-..-+|..+||. +.+.+|+++++|+||.+
T Consensus 19 ~~l~G-k~vvV~GYG~vG~g~A~~lr~~------Ga~V~V~e~D-Pi~alqA~~dGf~-----v~~~~~a~~~adi~vta 85 (162)
T PF00670_consen 19 LMLAG-KRVVVIGYGKVGKGIARALRGL------GARVTVTEID-PIRALQAAMDGFE-----VMTLEEALRDADIFVTA 85 (162)
T ss_dssp S--TT-SEEEEE--SHHHHHHHHHHHHT------T-EEEEE-SS-HHHHHHHHHTT-E-----EE-HHHHTTT-SEEEE-
T ss_pred eeeCC-CEEEEeCCCcccHHHHHHHhhC------CCEEEEEECC-hHHHHHhhhcCcE-----ecCHHHHHhhCCEEEEC
Confidence 45678 9999999999999999999988 9998887664 4445677778998 46899999999999999
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEecCch
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~~ 215 (583)
|-...+ +-.+....||+|++|..+..|.
T Consensus 86 TG~~~v--i~~e~~~~mkdgail~n~Gh~d 113 (162)
T PF00670_consen 86 TGNKDV--ITGEHFRQMKDGAILANAGHFD 113 (162)
T ss_dssp SSSSSS--B-HHHHHHS-TTEEEEESSSST
T ss_pred CCCccc--cCHHHHHHhcCCeEEeccCcCc
Confidence 987543 1235666799999998887764
No 130
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=98.26 E-value=2e-06 Score=92.80 Aligned_cols=88 Identities=16% Similarity=0.222 Sum_probs=66.0
Q ss_pred hhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEec
Q 007951 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (583)
Q Consensus 107 ~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILav 186 (583)
.++| ++|||||+|+||..+|+.|+.- |.+|+++++.... ...+.. ..+.++++++||+|++.+
T Consensus 113 ~L~g-ktvGIIG~G~IG~~vA~~l~a~------G~~V~~~dp~~~~-----~~~~~~-----~~~L~ell~~sDiI~lh~ 175 (378)
T PRK15438 113 SLHD-RTVGIVGVGNVGRRLQARLEAL------GIKTLLCDPPRAD-----RGDEGD-----FRSLDELVQEADILTFHT 175 (378)
T ss_pred CcCC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEECCcccc-----cccccc-----cCCHHHHHhhCCEEEEeC
Confidence 5789 9999999999999999999977 9998766532111 111111 458999999999999999
Q ss_pred cchH-----HHHHHH-HHHhcCCCCcEEEEe
Q 007951 187 SDAA-----QADNYE-KIFSCMKPNSILGLS 211 (583)
Q Consensus 187 pd~a-----~~~Vl~-eI~~~Lk~GaiL~~a 211 (583)
|-.. ...++. +....||+|++|+-+
T Consensus 176 PLt~~g~~~T~~li~~~~l~~mk~gailIN~ 206 (378)
T PRK15438 176 PLFKDGPYKTLHLADEKLIRSLKPGAILINA 206 (378)
T ss_pred CCCCCcccccccccCHHHHhcCCCCcEEEEC
Confidence 9443 334564 678889999998744
No 131
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=98.24 E-value=2.1e-06 Score=92.70 Aligned_cols=89 Identities=16% Similarity=0.168 Sum_probs=67.1
Q ss_pred hhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
..+.| ++|||||+|+||..+|+.|+.. |++|+++++.... . .+... ..+.+|++++||+|+++
T Consensus 112 ~~l~g-ktvGIIG~G~IG~~va~~l~a~------G~~V~~~Dp~~~~-----~-~~~~~----~~~l~ell~~aDiV~lh 174 (381)
T PRK00257 112 VDLAE-RTYGVVGAGHVGGRLVRVLRGL------GWKVLVCDPPRQE-----A-EGDGD----FVSLERILEECDVISLH 174 (381)
T ss_pred CCcCc-CEEEEECCCHHHHHHHHHHHHC------CCEEEEECCcccc-----c-ccCcc----ccCHHHHHhhCCEEEEe
Confidence 35778 9999999999999999999987 9998766543211 1 12121 46889999999999999
Q ss_pred ccchH-----HHHHHH-HHHhcCCCCcEEEEe
Q 007951 186 ISDAA-----QADNYE-KIFSCMKPNSILGLS 211 (583)
Q Consensus 186 vpd~a-----~~~Vl~-eI~~~Lk~GaiL~~a 211 (583)
+|-.. ...++. +....||+|++|+-+
T Consensus 175 ~Plt~~g~~~T~~li~~~~l~~mk~gailIN~ 206 (381)
T PRK00257 175 TPLTKEGEHPTRHLLDEAFLASLRPGAWLINA 206 (381)
T ss_pred CcCCCCccccccccCCHHHHhcCCCCeEEEEC
Confidence 99643 344665 578889999987744
No 132
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=98.15 E-value=1.8e-05 Score=83.84 Aligned_cols=160 Identities=19% Similarity=0.173 Sum_probs=111.7
Q ss_pred cccceeeeccccccccc-hhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecC
Q 007951 88 DRDEYIVRGGRDLFNLL-PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN 166 (583)
Q Consensus 88 ~~~e~v~~~~r~~f~~~-~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d 166 (583)
++-.--++.|+|...+. +-.+.| |++||||+|.+|.-.|..++.- |.+++.+++. ...+++++.|+.
T Consensus 123 ~~A~~s~k~g~wnr~~~~G~el~G-KTLgvlG~GrIGseVA~r~k~~------gm~vI~~dpi--~~~~~~~a~gvq--- 190 (406)
T KOG0068|consen 123 GQASASMKEGKWNRVKYLGWELRG-KTLGVLGLGRIGSEVAVRAKAM------GMHVIGYDPI--TPMALAEAFGVQ--- 190 (406)
T ss_pred chhheeeecCceeecceeeeEEec-cEEEEeecccchHHHHHHHHhc------CceEEeecCC--CchHHHHhccce---
Confidence 34444567788877665 788999 9999999999999999999877 8887666555 346788889988
Q ss_pred CCcCCHhhhhccCCeEEEeccchH-HHHHHH-HHHhcCCCCcEEE-EecC-c-----hhhhhhcccccCCCCccEEEecc
Q 007951 167 GTLGDIYETISGSDLVLLLISDAA-QADNYE-KIFSCMKPNSILG-LSHG-F-----LLGHLQSMGLDFPKNIGVIAVCP 237 (583)
Q Consensus 167 ~t~~d~~Eav~~ADIVILavpd~a-~~~Vl~-eI~~~Lk~GaiL~-~a~G-~-----~i~~ie~~~i~~p~dv~VI~v~P 237 (583)
..+.+|+++.||.|-|.+|-.. ...++. +-+..||+|.-|+ .+-| + .+.-+++.++ -..-+||.-..|
T Consensus 191 --~vsl~Eil~~ADFitlH~PLtP~T~~lin~~tfA~mKkGVriIN~aRGGvVDe~ALv~Al~sG~v-aGaAlDVy~~Ep 267 (406)
T KOG0068|consen 191 --LVSLEEILPKADFITLHVPLTPSTEKLLNDETFAKMKKGVRIINVARGGVVDEPALVRALDSGQV-AGAALDVYPEEP 267 (406)
T ss_pred --eeeHHHHHhhcCEEEEccCCCcchhhccCHHHHHHhhCCcEEEEecCCceechHHHHHHHhcCcc-cceeeecccCCC
Confidence 6799999999999999999443 345665 5677899998766 4433 3 1333444222 244567777777
Q ss_pred CCCchhhHHhHhccccccCCCceEEEeecCCCCH
Q 007951 238 KGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDG 271 (583)
Q Consensus 238 ngPg~~vR~lf~~G~e~~G~Gv~aliAv~qd~sg 271 (583)
..-+.. +++ .+- -+.+.+||+..+-
T Consensus 268 p~~~~~-~~L-v~h-------pnVi~TpHlgasT 292 (406)
T KOG0068|consen 268 PKNGWD-SEL-VSH-------PNVIVTPHLGAST 292 (406)
T ss_pred Cccchh-HHH-hcC-------CceeecCccccch
Confidence 554422 222 221 4566799986654
No 133
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=98.15 E-value=8.9e-05 Score=82.29 Aligned_cols=199 Identities=13% Similarity=0.063 Sum_probs=112.4
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcC-------------------ceecCCCcCCH
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-------------------FTEENGTLGDI 172 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G-------------------~~~~d~t~~d~ 172 (583)
|||+|||+|.+|..+|..|.+. |.|++|+ +.+.++...+.-.+.+ +.. ..+.
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~----g~g~~V~-gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~----t~~~ 72 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALK----CPDIEVV-VVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFF----STDV 72 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhc----CCCCeEE-EEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEE----EcCH
Confidence 8999999999999999999876 3346665 4444443333321111 111 3456
Q ss_pred hhhhccCCeEEEecc-ch--------------HHHHHHHHHHhcCCCCcEEEEe----cCchhhhhhcccccCCCCcc-E
Q 007951 173 YETISGSDLVLLLIS-DA--------------AQADNYEKIFSCMKPNSILGLS----HGFLLGHLQSMGLDFPKNIG-V 232 (583)
Q Consensus 173 ~Eav~~ADIVILavp-d~--------------a~~~Vl~eI~~~Lk~GaiL~~a----~G~~i~~ie~~~i~~p~dv~-V 232 (583)
.+++++||+||+||| |. .+..+.++|.+++++|++|+.- .|..- .+......-.++.+ .
T Consensus 73 ~~~i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~-~~~~~l~~~~~g~~f~ 151 (473)
T PLN02353 73 EKHVAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAE-AIEKILTHNSKGINFQ 151 (473)
T ss_pred HHHHhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHH-HHHHHHHhhCCCCCeE
Confidence 778999999999986 22 3456777899999999987644 34331 11110000011233 2
Q ss_pred EEecc--CCCchhhHHhHhccccccCCCceEEE-eecCC-CCHHHHHHHHHHHHHhCC-Ccccccchhhhhhhhhhhhhh
Q 007951 233 IAVCP--KGMGPSVRRLYVQGKEINGAGINSSF-AVHQD-VDGRATNVALGWSVALGS-PFTFATTLEQEYRSDIFGERG 307 (583)
Q Consensus 233 I~v~P--ngPg~~vR~lf~~G~e~~G~Gv~ali-Av~qd-~sgeale~a~ala~aIG~-~~vieTtf~eE~~sDlfgeqt 307 (583)
|...| -.||..+++.+. .+-++ .-..+ ...++.+.++++...+-. ..++.|+.+ +-+.-.+
T Consensus 152 v~~~PErl~~G~a~~d~~~---------p~riViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~~-~AE~~K~---- 217 (473)
T PLN02353 152 ILSNPEFLAEGTAIEDLFK---------PDRVLIGGRETPEGQKAVQALKDVYAHWVPEERIITTNLW-SAELSKL---- 217 (473)
T ss_pred EEECCCccCCCCcccccCC---------CCEEEEccCCchhhHHHHHHHHHHHHHhhcCCCEEecCHH-HHHHHHH----
Confidence 44556 234555433332 44433 22212 225678888888888742 233444433 2222222
Q ss_pred hHhhHHHH----HHHHHHHHHHHcCCCHHHHH
Q 007951 308 ILLGAVHG----IVESLFRRFTENGMNEDLAY 335 (583)
Q Consensus 308 vLsG~~pA----lieAl~d~~Ve~Gl~~e~A~ 335 (583)
..++.-+ |+..+.+.+-+.|++..+..
T Consensus 218 -~eN~~ra~~Iaf~NEla~lce~~giD~~eV~ 248 (473)
T PLN02353 218 -AANAFLAQRISSVNAMSALCEATGADVSQVS 248 (473)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 2344333 77777777777788765443
No 134
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=98.15 E-value=1e-05 Score=89.51 Aligned_cols=121 Identities=20% Similarity=0.211 Sum_probs=85.3
Q ss_pred hhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
..+.| ++++|||+|.+|..+|+.++.. |.+|++..+... ....|...|+. ..+.+++++.+|+|+++
T Consensus 250 ~~LaG-KtVgVIG~G~IGr~vA~rL~a~------Ga~ViV~e~dp~-~a~~A~~~G~~-----~~~leell~~ADIVI~a 316 (476)
T PTZ00075 250 VMIAG-KTVVVCGYGDVGKGCAQALRGF------GARVVVTEIDPI-CALQAAMEGYQ-----VVTLEDVVETADIFVTA 316 (476)
T ss_pred CCcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCch-hHHHHHhcCce-----eccHHHHHhcCCEEEEC
Confidence 36789 9999999999999999999987 888877655433 33355567876 45788999999999999
Q ss_pred ccchHHHHHHH-HHHhcCCCCcEEEEecCchhhhhhcccccCCCCccEEEeccCCCchh
Q 007951 186 ISDAAQADNYE-KIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPS 243 (583)
Q Consensus 186 vpd~a~~~Vl~-eI~~~Lk~GaiL~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~ 243 (583)
+.. ..++. +....||+|++|+.++-+.....-. .+....++++..+.|+.....
T Consensus 317 tGt---~~iI~~e~~~~MKpGAiLINvGr~d~Ei~i~-aL~~~~~vdv~evep~v~~~~ 371 (476)
T PTZ00075 317 TGN---KDIITLEHMRRMKNNAIVGNIGHFDNEIQVA-ELEAYPGIEIVEIKPQVDRYT 371 (476)
T ss_pred CCc---ccccCHHHHhccCCCcEEEEcCCCchHHhHH-HHHhcCCceeecccCCCCeEE
Confidence 753 34664 6788899999988665443111100 011123677888888665444
No 135
>PLN02306 hydroxypyruvate reductase
Probab=98.13 E-value=8.5e-06 Score=88.16 Aligned_cols=150 Identities=19% Similarity=0.188 Sum_probs=89.5
Q ss_pred hhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHH-HHHcCc-------eecC-CCcCCHhhhh
Q 007951 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-ARAAGF-------TEEN-GTLGDIYETI 176 (583)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~-A~~~G~-------~~~d-~t~~d~~Eav 176 (583)
..+.| ++|||||+|.+|..+|+.++.. +|.+|++.++........ ....|. ...+ ....+.+|++
T Consensus 161 ~~L~g-ktvGIiG~G~IG~~vA~~l~~~-----fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell 234 (386)
T PLN02306 161 NLLKG-QTVGVIGAGRIGSAYARMMVEG-----FKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVL 234 (386)
T ss_pred cCCCC-CEEEEECCCHHHHHHHHHHHhc-----CCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHH
Confidence 56899 9999999999999999998633 388887665542211111 011221 0000 0124789999
Q ss_pred ccCCeEEEeccch-HHHHHHH-HHHhcCCCCcEEEE-ecCch------hhhhhcccccCCCCccEEEeccCCCchhhHHh
Q 007951 177 SGSDLVLLLISDA-AQADNYE-KIFSCMKPNSILGL-SHGFL------LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRL 247 (583)
Q Consensus 177 ~~ADIVILavpd~-a~~~Vl~-eI~~~Lk~GaiL~~-a~G~~------i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~l 247 (583)
++||+|++++|-. ....++. +....||+|++|+- +=|-. +..+++..+. ...+||.--.|- |... +
T Consensus 235 ~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~i~-gAaLDVf~~EP~-~~~~---L 309 (386)
T PLN02306 235 READVISLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMF-RVGLDVFEDEPY-MKPG---L 309 (386)
T ss_pred hhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCee-EEEEeCCCCCCC-Ccch---H
Confidence 9999999999944 3445665 67889999998874 43421 2333332221 234566666663 2111 2
Q ss_pred HhccccccCCCceEEEeecCC-CCHHHH
Q 007951 248 YVQGKEINGAGINSSFAVHQD-VDGRAT 274 (583)
Q Consensus 248 f~~G~e~~G~Gv~aliAv~qd-~sgeal 274 (583)
+.. -|.+++||-. .+.+..
T Consensus 310 ~~~--------pNVilTPHiag~T~e~~ 329 (386)
T PLN02306 310 ADM--------KNAVVVPHIASASKWTR 329 (386)
T ss_pred hhC--------CCEEECCccccCcHHHH
Confidence 221 3777888863 344433
No 136
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=98.11 E-value=8.4e-06 Score=79.59 Aligned_cols=95 Identities=22% Similarity=0.322 Sum_probs=60.3
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecC--------------C---CcCCHhh
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN--------------G---TLGDIYE 174 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d--------------~---t~~d~~E 174 (583)
|||+|||+|-+|..+|..|.++ |++| +|.+.+++..+. ...|..+-. + ...+..+
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~------G~~V-~g~D~~~~~v~~-l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ 72 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEK------GHQV-IGVDIDEEKVEA-LNNGELPIYEPGLDELLKENVSAGRLRATTDIEE 72 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHT------TSEE-EEE-S-HHHHHH-HHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHH
T ss_pred CEEEEECCCcchHHHHHHHHhC------CCEE-EEEeCChHHHHH-Hhhccccccccchhhhhccccccccchhhhhhhh
Confidence 7999999999999999999999 9987 466665543333 223321100 0 0356778
Q ss_pred hhccCCeEEEeccch----------HHHHHHHHHHhcCCCCcEEEEecCc
Q 007951 175 TISGSDLVLLLISDA----------AQADNYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 175 av~~ADIVILavpd~----------a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
+++++|++|+|+|.. ....+++.|.++++++++|++-+=+
T Consensus 73 ai~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STv 122 (185)
T PF03721_consen 73 AIKDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTV 122 (185)
T ss_dssp HHHH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSS
T ss_pred hhhccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEE
Confidence 899999999999822 2456778899999999988765433
No 137
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=98.07 E-value=1.8e-05 Score=81.15 Aligned_cols=91 Identities=18% Similarity=0.183 Sum_probs=62.5
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCc-ccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccchH
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s-~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~a 190 (583)
+||||||+|.||..++.+|.+. +.+++++...+.+. +..+.+...|... +.+.++++.++|+|++|+|++.
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~----~~~~elv~v~d~~~~~a~~~a~~~~~~~----~~~~~ell~~~DvVvi~a~~~~ 73 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSG----RINAELYAFYDRNLEKAENLASKTGAKA----CLSIDELVEDVDLVVECASVNA 73 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcC----CCCeEEEEEECCCHHHHHHHHHhcCCee----ECCHHHHhcCCCEEEEcCChHH
Confidence 6899999999999999999875 11345443344433 3333344455543 5688888899999999999999
Q ss_pred HHHHHHHHHhcCCCCc-EEEEecC
Q 007951 191 QADNYEKIFSCMKPNS-ILGLSHG 213 (583)
Q Consensus 191 ~~~Vl~eI~~~Lk~Ga-iL~~a~G 213 (583)
+.++..++.. .|+ +++.+.|
T Consensus 74 ~~~~~~~al~---~Gk~Vvv~s~g 94 (265)
T PRK13304 74 VEEVVPKSLE---NGKDVIIMSVG 94 (265)
T ss_pred HHHHHHHHHH---cCCCEEEEchH
Confidence 9888776543 454 4444443
No 138
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=98.03 E-value=2.8e-05 Score=81.09 Aligned_cols=94 Identities=22% Similarity=0.357 Sum_probs=72.0
Q ss_pred hhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
..+.| +|++|||+|.+|.+++..|+.. |.+|++.+++.. ..+.+...|.... ...+..+.++++|+||.+
T Consensus 148 ~~l~g-~kvlViG~G~iG~~~a~~L~~~------Ga~V~v~~r~~~-~~~~~~~~G~~~~--~~~~l~~~l~~aDiVI~t 217 (296)
T PRK08306 148 ITIHG-SNVLVLGFGRTGMTLARTLKAL------GANVTVGARKSA-HLARITEMGLSPF--HLSELAEEVGKIDIIFNT 217 (296)
T ss_pred CCCCC-CEEEEECCcHHHHHHHHHHHHC------CCEEEEEECCHH-HHHHHHHcCCeee--cHHHHHHHhCCCCEEEEC
Confidence 34568 9999999999999999999987 888888777643 3566677787531 123567889999999999
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEec
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a~ 212 (583)
+|+.. +-++....+++|.+|+|.+
T Consensus 218 ~p~~~---i~~~~l~~~~~g~vIIDla 241 (296)
T PRK08306 218 IPALV---LTKEVLSKMPPEALIIDLA 241 (296)
T ss_pred CChhh---hhHHHHHcCCCCcEEEEEc
Confidence 98643 2245677889999988774
No 139
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.02 E-value=1.5e-05 Score=83.66 Aligned_cols=78 Identities=19% Similarity=0.230 Sum_probs=61.4
Q ss_pred hhhcCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 007951 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (583)
Q Consensus 106 ~~l~gikkIgIIG~G-~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVIL 184 (583)
-.++| |+|+|||.| .||..+|.+|.+. |+.|.++.+.. .++.+++++||+||.
T Consensus 155 i~l~G-k~V~vIG~s~ivG~PmA~~L~~~------gatVtv~~~~t-------------------~~l~e~~~~ADIVIs 208 (301)
T PRK14194 155 GDLTG-KHAVVIGRSNIVGKPMAALLLQA------HCSVTVVHSRS-------------------TDAKALCRQADIVVA 208 (301)
T ss_pred CCCCC-CEEEEECCCCccHHHHHHHHHHC------CCEEEEECCCC-------------------CCHHHHHhcCCEEEE
Confidence 35789 999999996 9999999999998 99988875431 256788999999999
Q ss_pred eccchHHHHHHHHHHhcCCCCcEEEEecCch
Q 007951 185 LISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (583)
Q Consensus 185 avpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~~ 215 (583)
+++.... ++. ..+++|++|+++ |++
T Consensus 209 avg~~~~---v~~--~~ik~GaiVIDv-gin 233 (301)
T PRK14194 209 AVGRPRL---IDA--DWLKPGAVVIDV-GIN 233 (301)
T ss_pred ecCChhc---ccH--hhccCCcEEEEe-ccc
Confidence 9997643 221 128999998887 443
No 140
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=98.01 E-value=3.4e-05 Score=84.05 Aligned_cols=93 Identities=23% Similarity=0.218 Sum_probs=73.6
Q ss_pred hhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEec
Q 007951 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (583)
Q Consensus 107 ~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILav 186 (583)
.+.| ++|+|||+|.+|..+|+.++.. |.+|++..+... ....|...|+. +.+.+++++++|+||.++
T Consensus 192 ~l~G-k~VvViG~G~IG~~vA~~ak~~------Ga~ViV~d~dp~-r~~~A~~~G~~-----v~~leeal~~aDVVItaT 258 (406)
T TIGR00936 192 LIAG-KTVVVAGYGWCGKGIAMRARGM------GARVIVTEVDPI-RALEAAMDGFR-----VMTMEEAAKIGDIFITAT 258 (406)
T ss_pred CCCc-CEEEEECCCHHHHHHHHHHhhC------cCEEEEEeCChh-hHHHHHhcCCE-----eCCHHHHHhcCCEEEECC
Confidence 3788 9999999999999999999987 888877655443 34667778886 356788999999999988
Q ss_pred cchHHHHHHH-HHHhcCCCCcEEEEecCch
Q 007951 187 SDAAQADNYE-KIFSCMKPNSILGLSHGFL 215 (583)
Q Consensus 187 pd~a~~~Vl~-eI~~~Lk~GaiL~~a~G~~ 215 (583)
.. ..++. +....+|+|.+|+.++.+.
T Consensus 259 G~---~~vI~~~~~~~mK~GailiN~G~~~ 285 (406)
T TIGR00936 259 GN---KDVIRGEHFENMKDGAIVANIGHFD 285 (406)
T ss_pred CC---HHHHHHHHHhcCCCCcEEEEECCCC
Confidence 74 44565 4778899999988665544
No 141
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=98.01 E-value=0.0002 Score=74.75 Aligned_cols=153 Identities=19% Similarity=0.197 Sum_probs=93.1
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHH-HcCceec-CCC--c----CCHhhhhccCCeEE
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-AAGFTEE-NGT--L----GDIYETISGSDLVL 183 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~-~~G~~~~-d~t--~----~d~~Eav~~ADIVI 183 (583)
|||+|||.|.||+-+|..|.++ |.+|.+..|..+ ..+.-+ +.|+... ++. . ....+.....|+||
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~------G~~V~lv~r~~~-~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~vi 75 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARA------GLPVRLILRDRQ-RLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLL 75 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhC------CCCeEEEEechH-HHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEE
Confidence 7899999999999999999988 888877776432 233333 3354321 111 0 01112235689999
Q ss_pred EeccchHHHHHHHHHHhcCCCCcEE-EEecCchh-hhhhcccccCCCC-----ccEEEeccCCCchhhHHhHhccccccC
Q 007951 184 LLISDAAQADNYEKIFSCMKPNSIL-GLSHGFLL-GHLQSMGLDFPKN-----IGVIAVCPKGMGPSVRRLYVQGKEING 256 (583)
Q Consensus 184 Lavpd~a~~~Vl~eI~~~Lk~GaiL-~~a~G~~i-~~ie~~~i~~p~d-----v~VI~v~PngPg~~vR~lf~~G~e~~G 256 (583)
++||-....++++.+.+++.++++| .+--|+.. ..+.. .+|++ +..+..+...|+.+. ..|
T Consensus 76 v~vK~~~~~~al~~l~~~l~~~t~vv~lQNGv~~~e~l~~---~~~~~~v~~g~~~~ga~~~~pg~v~---------~~~ 143 (305)
T PRK05708 76 LACKAYDAEPAVASLAHRLAPGAELLLLQNGLGSQDAVAA---RVPHARCIFASSTEGAFRDGDWRVV---------FAG 143 (305)
T ss_pred EECCHHhHHHHHHHHHhhCCCCCEEEEEeCCCCCHHHHHH---hCCCCcEEEEEeeeceecCCCCEEE---------Eec
Confidence 9999998899999999999998865 56678753 23333 33443 122334455666652 112
Q ss_pred CCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 007951 257 AGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (583)
Q Consensus 257 ~Gv~aliAv~qd~sgeale~a~ala~aIG~~ 287 (583)
.|.. .+.... .+..+...+++...|..
T Consensus 144 ~g~~-~~G~~~---~~~~~~l~~~l~~ag~~ 170 (305)
T PRK05708 144 HGFT-WLGDPR---NPTAPAWLDDLREAGIP 170 (305)
T ss_pred eEEE-EEcCCC---CcchHHHHHHHHhcCCC
Confidence 3332 244222 23344556677777754
No 142
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=98.01 E-value=2.8e-05 Score=80.13 Aligned_cols=92 Identities=18% Similarity=0.218 Sum_probs=64.4
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEE-EEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccchH
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~Vi-Vg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~a 190 (583)
++|||||+|.||..++++|.+.. .++++. +.++..++..+.+.+.|... .+.+.++++.++|+|++|+|+..
T Consensus 7 irIGIIG~G~IG~~~a~~L~~~~----~~~el~aV~dr~~~~a~~~a~~~g~~~---~~~~~eell~~~D~Vvi~tp~~~ 79 (271)
T PRK13302 7 LRVAIAGLGAIGKAIAQALDRGL----PGLTLSAVAVRDPQRHADFIWGLRRPP---PVVPLDQLATHADIVVEAAPASV 79 (271)
T ss_pred eEEEEECccHHHHHHHHHHHhcC----CCeEEEEEECCCHHHHHHHHHhcCCCc---ccCCHHHHhcCCCEEEECCCcHH
Confidence 78999999999999999998621 156655 33444344445555666421 15678899999999999999999
Q ss_pred HHHHHHHHHhcCCCCc-EEEEecC
Q 007951 191 QADNYEKIFSCMKPNS-ILGLSHG 213 (583)
Q Consensus 191 ~~~Vl~eI~~~Lk~Ga-iL~~a~G 213 (583)
+.++..... +.|+ ++..+.|
T Consensus 80 h~e~~~~aL---~aGk~Vi~~s~g 100 (271)
T PRK13302 80 LRAIVEPVL---AAGKKAIVLSVG 100 (271)
T ss_pred HHHHHHHHH---HcCCcEEEecch
Confidence 988776653 4566 4444444
No 143
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=97.96 E-value=5.9e-05 Score=66.62 Aligned_cols=81 Identities=25% Similarity=0.295 Sum_probs=61.8
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCc-ccHHHHHHcCceecCCCcCCHhhhhc--cCCeEEEeccc
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s-~s~~~A~~~G~~~~d~t~~d~~Eav~--~ADIVILavpd 188 (583)
.+|||||+|.+|..+...+++. ..+.+++...+.++ +....+.+.|+.. ..|.+++++ +.|+|++++|+
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~----~~~~~v~~v~d~~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~D~V~I~tp~ 72 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRS----SPDFEVVAVCDPDPERAEAFAEKYGIPV----YTDLEELLADEDVDAVIIATPP 72 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHT----TTTEEEEEEECSSHHHHHHHHHHTTSEE----ESSHHHHHHHTTESEEEEESSG
T ss_pred CEEEEECCcHHHHHHHHHHHhc----CCCcEEEEEEeCCHHHHHHHHHHhcccc----hhHHHHHHHhhcCCEEEEecCC
Confidence 3799999999999999999876 12456554444444 3334467788875 778999887 79999999999
Q ss_pred hHHHHHHHHHHh
Q 007951 189 AAQADNYEKIFS 200 (583)
Q Consensus 189 ~a~~~Vl~eI~~ 200 (583)
..+.++......
T Consensus 73 ~~h~~~~~~~l~ 84 (120)
T PF01408_consen 73 SSHAEIAKKALE 84 (120)
T ss_dssp GGHHHHHHHHHH
T ss_pred cchHHHHHHHHH
Confidence 999988877543
No 144
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=97.96 E-value=0.00033 Score=73.63 Aligned_cols=154 Identities=19% Similarity=0.246 Sum_probs=97.6
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCC--------cCCHhhhhccCCeEE
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGT--------LGDIYETISGSDLVL 183 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t--------~~d~~Eav~~ADIVI 183 (583)
|||.|||.|.||.-++..|.+. |.+|.+..|. +..+.-.+.|....+.. ..+..+....+|+||
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~------g~~V~~~~R~--~~~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlvi 72 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKA------GHDVTLLVRS--RRLEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVI 72 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhC------CCeEEEEecH--HHHHHHHhCCeEEecCCCccccccccccChhhcCCCCEEE
Confidence 6899999999999999999998 8666666654 22556666687542211 112235566899999
Q ss_pred EeccchHHHHHHHHHHhcCCCCcEE-EEecCch-hhhhhcccccCCCCccEE-Eecc-----CCCchhhHHhHhcccccc
Q 007951 184 LLISDAAQADNYEKIFSCMKPNSIL-GLSHGFL-LGHLQSMGLDFPKNIGVI-AVCP-----KGMGPSVRRLYVQGKEIN 255 (583)
Q Consensus 184 Lavpd~a~~~Vl~eI~~~Lk~GaiL-~~a~G~~-i~~ie~~~i~~p~dv~VI-~v~P-----ngPg~~vR~lf~~G~e~~ 255 (583)
+++|-.+..++++.+.|.+++.+.| .+-=|.. ...+.+ .+|.. .++ ++.+ ++|+.+. ..
T Consensus 73 v~vKa~q~~~al~~l~~~~~~~t~vl~lqNG~g~~e~l~~---~~~~~-~il~G~~~~~a~~~~~g~v~---------~~ 139 (307)
T COG1893 73 VTVKAYQLEEALPSLAPLLGPNTVVLFLQNGLGHEEELRK---ILPKE-TVLGGVTTHGAVREGPGHVV---------HT 139 (307)
T ss_pred EEeccccHHHHHHHhhhcCCCCcEEEEEeCCCcHHHHHHH---hCCcc-eEEEEEeeeeeEecCCceEE---------Ee
Confidence 9999999999999999999999854 4556664 333433 44444 232 2233 4555552 12
Q ss_pred CCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 007951 256 GAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (583)
Q Consensus 256 G~Gv~aliAv~qd~sgeale~a~ala~aIG~~ 287 (583)
|.|... +........+..+...+.++..|..
T Consensus 140 g~g~~~-ig~~~~~~~~~~~~i~~~~~~a~~~ 170 (307)
T COG1893 140 GLGDTV-IGELRGGRDELVKALAELFKEAGLE 170 (307)
T ss_pred cCCcEE-EccCCCCchHHHHHHHHHHHhCCCC
Confidence 334444 3322222224555555566777653
No 145
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=97.95 E-value=4.5e-05 Score=83.59 Aligned_cols=92 Identities=24% Similarity=0.242 Sum_probs=73.2
Q ss_pred hcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEecc
Q 007951 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (583)
Q Consensus 108 l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavp 187 (583)
+.| ++|+|||+|.+|..+|+.++.. |.+|++.++...+ ...+...|+. +.+.+++++.+|+||.++.
T Consensus 210 l~G-k~VlViG~G~IG~~vA~~lr~~------Ga~ViV~d~dp~r-a~~A~~~G~~-----v~~l~eal~~aDVVI~aTG 276 (425)
T PRK05476 210 IAG-KVVVVAGYGDVGKGCAQRLRGL------GARVIVTEVDPIC-ALQAAMDGFR-----VMTMEEAAELGDIFVTATG 276 (425)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEcCCchh-hHHHHhcCCE-----ecCHHHHHhCCCEEEECCC
Confidence 578 9999999999999999999988 8888877665433 4555666876 3578899999999999986
Q ss_pred chHHHHHHH-HHHhcCCCCcEEEEecCch
Q 007951 188 DAAQADNYE-KIFSCMKPNSILGLSHGFL 215 (583)
Q Consensus 188 d~a~~~Vl~-eI~~~Lk~GaiL~~a~G~~ 215 (583)
.. .++. +....||+|.+|+.++.+.
T Consensus 277 ~~---~vI~~~~~~~mK~GailiNvG~~d 302 (425)
T PRK05476 277 NK---DVITAEHMEAMKDGAILANIGHFD 302 (425)
T ss_pred CH---HHHHHHHHhcCCCCCEEEEcCCCC
Confidence 43 3565 5778899999988776665
No 146
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.94 E-value=0.00087 Score=70.63 Aligned_cols=207 Identities=13% Similarity=0.058 Sum_probs=130.4
Q ss_pred hHHHHHHHHHHhhhhhcCCceEEEEecCCcc-----------------cHHHHHHcCceecC---------CCcC--CHh
Q 007951 122 QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-----------------SFAEARAAGFTEEN---------GTLG--DIY 173 (583)
Q Consensus 122 mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~-----------------s~~~A~~~G~~~~d---------~t~~--d~~ 173 (583)
||..+|..+..+ |++|++.+...+. .++.+.+.|..... .... +..
T Consensus 1 MG~giA~~~a~~------G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 74 (314)
T PRK08269 1 MGQGIALAFAFA------GHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAA 74 (314)
T ss_pred CcHHHHHHHHhC------CCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchH
Confidence 789999999888 9999888765421 11222333322100 0011 256
Q ss_pred hhhccCCeEEEeccchHHH--HHHHHHHhcCCCCcEEE-EecCchhhhhhcccccCCCCccEEEeccCCCchhhHHhHhc
Q 007951 174 ETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQ 250 (583)
Q Consensus 174 Eav~~ADIVILavpd~a~~--~Vl~eI~~~Lk~GaiL~-~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~ 250 (583)
+++++||+||-++|..... .++.+|.+.++++++|. -++++.+..+.. ..+..-+++.+|+--|.+.++
T Consensus 75 ~a~~~aD~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaSntS~~~~~~la~---~~~~p~r~~g~Hf~~Pp~~~~----- 146 (314)
T PRK08269 75 DALADADLVFEAVPEVLDAKREALRWLGRHVDADAIIASTTSTFLVTDLQR---HVAHPERFLNAHWLNPAYLMP----- 146 (314)
T ss_pred HHhccCCEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEEccccCCHHHHHh---hcCCcccEEEEecCCccccCc-----
Confidence 7899999999999977664 47889999999999874 556666666654 222234799999977776631
Q ss_pred cccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhHhhHHHHHHHHHHHHHHHcCCC
Q 007951 251 GKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMN 330 (583)
Q Consensus 251 G~e~~G~Gv~aliAv~qd~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvLsG~~pAlieAl~d~~Ve~Gl~ 330 (583)
.-- +..+...+.+.++.+..++..+|... +. ..+.. . -++...+.+++.-++..+.+.|.+
T Consensus 147 --------lvE-Vv~g~~t~~e~~~~~~~ll~~lGk~~-v~---v~d~~-----G-fi~nri~~~~l~EAl~l~e~g~~~ 207 (314)
T PRK08269 147 --------LVE-VSPSDATDPAVVDRLAALLERIGKVP-VV---CGPSP-----G-YIVPRIQALAMNEAARMVEEGVAS 207 (314)
T ss_pred --------eEE-EeCCCCCCHHHHHHHHHHHHHcCCcE-EE---ecCCC-----C-cchHHHHHHHHHHHHHHHHhCCCC
Confidence 111 34577888999999999999999752 21 11111 1 134444455555555566677799
Q ss_pred HHHHHHHHHHHH------HHHHHHHHHHhcHHHHHHhc
Q 007951 331 EDLAYKNTVECI------TGIISKIISTQGMLAVYNSF 362 (583)
Q Consensus 331 ~e~A~~~~~q~l------~Glia~li~e~G~~~m~d~v 362 (583)
+++......... .| .-+++-..|+...++..
T Consensus 208 ~e~iD~a~~~g~G~~~~~~G-pf~~~D~~Gld~~~~~~ 244 (314)
T PRK08269 208 AEDIDKAIRTGFGLRFAVLG-LLEFIDWGGCDILYYAS 244 (314)
T ss_pred HHHHHHHHHhCCCCCccCcC-HHHHHHhhhHHHHHHHH
Confidence 988776544331 24 34555666765554443
No 147
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=97.92 E-value=7.6e-05 Score=80.53 Aligned_cols=148 Identities=18% Similarity=0.154 Sum_probs=102.5
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcC----ceecCCCcCCHhhh---hccCCeEEE
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG----FTEENGTLGDIYET---ISGSDLVLL 184 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G----~~~~d~t~~d~~Ea---v~~ADIVIL 184 (583)
..||+||+|.||..+|+|+.+. |+.|.|++|..++..+.-.+.+ ++. ..+++|. ++.---|+|
T Consensus 4 ~~iGviGLaVMG~NLaLNi~~~------G~~VavyNRt~~ktd~f~~~~~~~k~i~~----~~sieefV~~Le~PRkI~l 73 (473)
T COG0362 4 ADIGVIGLAVMGSNLALNIADH------GYTVAVYNRTTEKTDEFLAERAKGKNIVP----AYSIEEFVASLEKPRKILL 73 (473)
T ss_pred cceeeEehhhhhHHHHHHHHhc------CceEEEEeCCHHHHHHHHHhCccCCCccc----cCcHHHHHHHhcCCceEEE
Confidence 5799999999999999999999 9999999999887766555544 232 4566654 567788999
Q ss_pred eccchH-HHHHHHHHHhcCCCCcEEEEecCch----hhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCc
Q 007951 185 LISDAA-QADNYEKIFSCMKPNSILGLSHGFL----LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGI 259 (583)
Q Consensus 185 avpd~a-~~~Vl~eI~~~Lk~GaiL~~a~G~~----i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv 259 (583)
.|+-.. ...+++++.|+|.+|.+|+|-.--. +...++ .-.+++.||..==.+ |.|.--.|
T Consensus 74 MVkAG~~VD~~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~e---L~~~Gi~FvG~GVSG-----------GEeGA~~G- 138 (473)
T COG0362 74 MVKAGTPVDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKE---LSEKGILFVGMGVSG-----------GEEGARHG- 138 (473)
T ss_pred EEecCCcHHHHHHHHHhhcCCCCEEEeCCCcCCchHHHHHHH---HHhcCCeEEeccccc-----------cccccccC-
Confidence 988753 3568889999999999999875432 222221 224577787532211 11000011
Q ss_pred eEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 007951 260 NSSFAVHQDVDGRATNVALGWSVALGSP 287 (583)
Q Consensus 260 ~aliAv~qd~sgeale~a~ala~aIG~~ 287 (583)
|+ |-|.. +.++.+.+.-++..|-+.
T Consensus 139 PS-iMpGG--~~eay~~v~pil~~IaAk 163 (473)
T COG0362 139 PS-IMPGG--QKEAYELVAPILTKIAAK 163 (473)
T ss_pred CC-cCCCC--CHHHHHHHHHHHHHHHhh
Confidence 22 44444 678999999999999764
No 148
>PLN02494 adenosylhomocysteinase
Probab=97.91 E-value=4.2e-05 Score=84.60 Aligned_cols=122 Identities=17% Similarity=0.150 Sum_probs=83.4
Q ss_pred cccchhhhhhhhcccccceeeeccccccccc-hhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcc
Q 007951 74 FETSVFKKDMISLADRDEYIVRGGRDLFNLL-PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR 152 (583)
Q Consensus 74 ~~~~~~~~~~~~~~~~~e~v~~~~r~~f~~~-~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~ 152 (583)
-|-...+.+--+.-|+-+-++.+ +-.. .-.+.| ++++|||+|.+|..+|+.++.. |.+|++..+.. .
T Consensus 221 vnds~~K~~fDn~yGtgqS~~d~----i~r~t~i~LaG-KtVvViGyG~IGr~vA~~aka~------Ga~VIV~e~dp-~ 288 (477)
T PLN02494 221 VNDSVTKSKFDNLYGCRHSLPDG----LMRATDVMIAG-KVAVICGYGDVGKGCAAAMKAA------GARVIVTEIDP-I 288 (477)
T ss_pred EcChhhhhhhhccccccccHHHH----HHHhcCCccCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCc-h
Confidence 34444444444455666654442 2212 223788 9999999999999999999977 88887765543 2
Q ss_pred cHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccchHHHHHHHHHHhcCCCCcEEEEecCc
Q 007951 153 SFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 153 s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
....|...|+.. .+.+++++++|+|+.++..... +..+....||+|++|+.++.+
T Consensus 289 r~~eA~~~G~~v-----v~leEal~~ADVVI~tTGt~~v--I~~e~L~~MK~GAiLiNvGr~ 343 (477)
T PLN02494 289 CALQALMEGYQV-----LTLEDVVSEADIFVTTTGNKDI--IMVDHMRKMKNNAIVCNIGHF 343 (477)
T ss_pred hhHHHHhcCCee-----ccHHHHHhhCCEEEECCCCccc--hHHHHHhcCCCCCEEEEcCCC
Confidence 335677788863 4678999999999987765422 225677789999998866544
No 149
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=97.89 E-value=4.8e-05 Score=79.62 Aligned_cols=96 Identities=19% Similarity=0.216 Sum_probs=69.2
Q ss_pred hcCCCEEEEEccchhHHHHHHHHHHhhhhhcCC-ceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEec
Q 007951 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (583)
Q Consensus 108 l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G-~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILav 186 (583)
+.+ ++|+|||.|.||..+++.|+.. | .+|++.+|..++..+.|.+.|.... ...+..+++.++|+||.+|
T Consensus 176 l~~-~~V~ViGaG~iG~~~a~~L~~~------g~~~V~v~~r~~~ra~~la~~~g~~~~--~~~~~~~~l~~aDvVi~at 246 (311)
T cd05213 176 LKG-KKVLVIGAGEMGELAAKHLAAK------GVAEITIANRTYERAEELAKELGGNAV--PLDELLELLNEADVVISAT 246 (311)
T ss_pred ccC-CEEEEECcHHHHHHHHHHHHHc------CCCEEEEEeCCHHHHHHHHHHcCCeEE--eHHHHHHHHhcCCEEEECC
Confidence 578 9999999999999999999985 5 4677777776666677887776421 0234567889999999999
Q ss_pred cchHHHHHHHHHHhcC-CCCcEEEEec
Q 007951 187 SDAAQADNYEKIFSCM-KPNSILGLSH 212 (583)
Q Consensus 187 pd~a~~~Vl~eI~~~L-k~GaiL~~a~ 212 (583)
+.....++++.+.... +++.+++|.+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~viDla 273 (311)
T cd05213 247 GAPHYAKIVERAMKKRSGKPRLIVDLA 273 (311)
T ss_pred CCCchHHHHHHHHhhCCCCCeEEEEeC
Confidence 9776655555543322 2455666664
No 150
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=97.86 E-value=6.7e-05 Score=69.15 Aligned_cols=94 Identities=19% Similarity=0.264 Sum_probs=69.9
Q ss_pred EEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCC----------cCCHhhhhccCCeEE
Q 007951 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGT----------LGDIYETISGSDLVL 183 (583)
Q Consensus 114 IgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t----------~~d~~Eav~~ADIVI 183 (583)
|+|||.|+||.-+|..|.+. |++|.+..|.. ..+.-.+.|+...+.. ..+..+.....|+||
T Consensus 1 I~I~G~GaiG~~~a~~L~~~------g~~V~l~~r~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi 72 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQA------GHDVTLVSRSP--RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVI 72 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHT------TCEEEEEESHH--HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEE
T ss_pred CEEECcCHHHHHHHHHHHHC------CCceEEEEccc--cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEE
Confidence 78999999999999999888 99987776653 3444556677532111 111123567899999
Q ss_pred EeccchHHHHHHHHHHhcCCCCcE-EEEecCch
Q 007951 184 LLISDAAQADNYEKIFSCMKPNSI-LGLSHGFL 215 (583)
Q Consensus 184 Lavpd~a~~~Vl~eI~~~Lk~Gai-L~~a~G~~ 215 (583)
+++|-.+..++++.+++++.+++. |++--|+.
T Consensus 73 v~vKa~~~~~~l~~l~~~~~~~t~iv~~qNG~g 105 (151)
T PF02558_consen 73 VAVKAYQLEQALQSLKPYLDPNTTIVSLQNGMG 105 (151)
T ss_dssp E-SSGGGHHHHHHHHCTGEETTEEEEEESSSSS
T ss_pred EEecccchHHHHHHHhhccCCCcEEEEEeCCCC
Confidence 999999999999999999999865 55667775
No 151
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=97.85 E-value=9.4e-05 Score=80.85 Aligned_cols=92 Identities=23% Similarity=0.261 Sum_probs=72.8
Q ss_pred hhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEec
Q 007951 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (583)
Q Consensus 107 ~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILav 186 (583)
.+.| ++|+|||+|.+|...++.++.. |.+|++..+. +.....|...|+.. .+.+++++.+|+||.++
T Consensus 199 ~l~G-ktVvViG~G~IG~~va~~ak~~------Ga~ViV~d~d-~~R~~~A~~~G~~~-----~~~~e~v~~aDVVI~at 265 (413)
T cd00401 199 MIAG-KVAVVAGYGDVGKGCAQSLRGQ------GARVIVTEVD-PICALQAAMEGYEV-----MTMEEAVKEGDIFVTTT 265 (413)
T ss_pred CCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEECC-hhhHHHHHhcCCEE-----ccHHHHHcCCCEEEECC
Confidence 4678 9999999999999999999988 8888775544 45578888999863 45678899999999998
Q ss_pred cchHHHHHHH-HHHhcCCCCcEEEEecCc
Q 007951 187 SDAAQADNYE-KIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 187 pd~a~~~Vl~-eI~~~Lk~GaiL~~a~G~ 214 (583)
... .++. +....+++|.+|+.++.+
T Consensus 266 G~~---~~i~~~~l~~mk~GgilvnvG~~ 291 (413)
T cd00401 266 GNK---DIITGEHFEQMKDGAIVCNIGHF 291 (413)
T ss_pred CCH---HHHHHHHHhcCCCCcEEEEeCCC
Confidence 753 3454 467789999988766543
No 152
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=97.83 E-value=6.4e-05 Score=67.55 Aligned_cols=97 Identities=12% Similarity=0.032 Sum_probs=60.9
Q ss_pred EEEEEc-cchhHHHHHHHHHHhhhhhcCCceEEEE-ecCCcccHHHHHHcC-ceecCCCcCCHhhh-hccCCeEEEeccc
Q 007951 113 QIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVG-LRKGSRSFAEARAAG-FTEENGTLGDIYET-ISGSDLVLLLISD 188 (583)
Q Consensus 113 kIgIIG-~G~mG~A~A~nLrdsl~~~g~G~~ViVg-~r~~s~s~~~A~~~G-~~~~d~t~~d~~Ea-v~~ADIVILavpd 188 (583)
||+||| .|.+|..++..|.+. .++++... .+..++....+...+ +....-...+..+. ..++|+||+|+|+
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~-----~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~ 75 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEH-----PDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPH 75 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcC-----CCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCc
Confidence 589999 589999999999884 15554333 222221112222222 11000000111111 2589999999999
Q ss_pred hHHHHHHHHHHhcCCCCcEEEEecCc
Q 007951 189 AAQADNYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 189 ~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
..+.+++..+.+.+++|++|++++|.
T Consensus 76 ~~~~~~~~~~~~~~~~g~~viD~s~~ 101 (122)
T smart00859 76 GVSKEIAPLLPKAAEAGVKVIDLSSA 101 (122)
T ss_pred HHHHHHHHHHHhhhcCCCEEEECCcc
Confidence 99999888767778999999999886
No 153
>PRK06141 ornithine cyclodeaminase; Validated
Probab=97.70 E-value=7.3e-05 Score=78.45 Aligned_cols=85 Identities=18% Similarity=0.155 Sum_probs=61.2
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCC-ceEEEEecCCcccHHHHHHc---C--ceecCCCcCCHhhhhccCCeEEEe
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAA---G--FTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G-~~ViVg~r~~s~s~~~A~~~---G--~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
++|+|||+|.||..+++.+... .+ .+|.+++|..++..+.+.+. | +.. +.+.++++++||+|+.+
T Consensus 126 ~~v~iiG~G~~a~~~~~al~~~-----~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~----~~~~~~av~~aDIVi~a 196 (314)
T PRK06141 126 SRLLVVGTGRLASLLALAHASV-----RPIKQVRVWGRDPAKAEALAAELRAQGFDAEV----VTDLEAAVRQADIISCA 196 (314)
T ss_pred ceEEEECCcHHHHHHHHHHHhc-----CCCCEEEEEcCCHHHHHHHHHHHHhcCCceEE----eCCHHHHHhcCCEEEEe
Confidence 8999999999999999877652 03 47888888766655555543 4 332 46788899999999999
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEE
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILG 209 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~ 209 (583)
|+.. ..++.. ..++||++|.
T Consensus 197 T~s~--~pvl~~--~~l~~g~~i~ 216 (314)
T PRK06141 197 TLST--EPLVRG--EWLKPGTHLD 216 (314)
T ss_pred eCCC--CCEecH--HHcCCCCEEE
Confidence 9865 233332 4578998543
No 154
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.68 E-value=0.00011 Score=77.07 Aligned_cols=77 Identities=18% Similarity=0.205 Sum_probs=60.2
Q ss_pred hhcCCCEEEEEc-cchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 107 ~l~gikkIgIIG-~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
.++| |+|+||| .|.||..+|.+|.+. |+.|.++.... .+.++++++||+||.+
T Consensus 155 ~~~G-k~V~viGrs~~mG~PmA~~L~~~------g~tVtv~~~rT-------------------~~l~e~~~~ADIVIsa 208 (296)
T PRK14188 155 DLSG-LNAVVIGRSNLVGKPMAQLLLAA------NATVTIAHSRT-------------------RDLPAVCRRADILVAA 208 (296)
T ss_pred CCCC-CEEEEEcCCcchHHHHHHHHHhC------CCEEEEECCCC-------------------CCHHHHHhcCCEEEEe
Confidence 4789 9999999 999999999999988 99988874221 1346788999999999
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEecCch
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~~ 215 (583)
++...+ +++. .+++|++|+++ |++
T Consensus 209 vg~~~~---v~~~--~lk~GavVIDv-Gin 232 (296)
T PRK14188 209 VGRPEM---VKGD--WIKPGATVIDV-GIN 232 (296)
T ss_pred cCChhh---cchh--eecCCCEEEEc-CCc
Confidence 997653 3321 28999988887 443
No 155
>COG5495 Uncharacterized conserved protein [Function unknown]
Probab=97.62 E-value=0.00072 Score=68.80 Aligned_cols=212 Identities=12% Similarity=0.044 Sum_probs=127.4
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHH----cCceecCCCcCCHhhhhccCCeEEEecc
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLLLIS 187 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~----~G~~~~d~t~~d~~Eav~~ADIVILavp 187 (583)
..++|||.|..|.+..+..-+- ++.. + -..++|.+.|+. .+.. ..+.+...+-.+++|.-+|
T Consensus 11 v~~~~vgtgrl~ra~~~ra~h~------~~~c--s-~i~srS~~~a~~LaE~~~a~-----p~d~~~~ael~~~vfv~vp 76 (289)
T COG5495 11 VVVGIVGTGRLGRAALLRADHV------VVAC--S-AISSRSRDRAQNLAETYVAP-----PLDVAKSAELLLLVFVDVP 76 (289)
T ss_pred eEEEEeecchHHHHHHHHhcch------heee--h-hhhhcCHHHHhhchhccCCC-----ccchhhChhhhceEEecch
Confidence 5789999999999954433222 2221 1 122344555443 3322 2344444555678888888
Q ss_pred chHHHHHHHHHHhcCCCCcEEEEecCchhh-hhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEeec
Q 007951 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLG-HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (583)
Q Consensus 188 d~a~~~Vl~eI~~~Lk~GaiL~~a~G~~i~-~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv~ 266 (583)
|..+.++.... .-.||++|.+++|++-. .+.. .-+.+.--..+||++......+--.+- .+.-..|+ .
T Consensus 77 d~~~s~vaa~~--~~rpg~iv~HcSga~~~~il~~---~gr~g~~~asiHP~f~Fsgl~edl~rl-----~d~~~~i~-e 145 (289)
T COG5495 77 DALYSGVAATS--LNRPGTIVAHCSGANGSGILAP---LGRQGCIPASIHPAFSFSGLDEDLSRL-----KDTIFGIT-E 145 (289)
T ss_pred HHHHHHHHHhc--ccCCCeEEEEccCCCchhhhhh---hhhcCCcceeecccccccCCHHHHHhC-----cccEEEee-c
Confidence 88666665543 34799999999999733 2211 112244456799998877765544432 23333232 3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhH-hhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 007951 267 QDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGIL-LGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGI 345 (583)
Q Consensus 267 qd~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvL-sG~~pAlieAl~d~~Ve~Gl~~e~A~~~~~q~l~Gl 345 (583)
. +.....+++.|+..+|+.... +.|..-.+||..++. ++.+.++.--..+....+|.++-++.-+.+--+.|
T Consensus 146 a--D~~g~ai~q~la~emgg~~f~----V~~~~r~lYHaaa~~asnf~v~~l~~a~~i~~aag~Dq~e~iv~~~pL~~g- 218 (289)
T COG5495 146 A--DDVGYAIVQSLALEMGGEPFC----VREEARILYHAAAVHASNFIVTVLADALEIYRAAGDDQPELIVEVGPLARG- 218 (289)
T ss_pred c--cccccHHHHHHHHHhCCCcee----echhHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCCCcceeeeehHHHHH-
Confidence 3 334556788999999997321 235566799998866 56666666666778889999988777664433433
Q ss_pred HHHHHHHhcH
Q 007951 346 ISKIISTQGM 355 (583)
Q Consensus 346 ia~li~e~G~ 355 (583)
..+-.++.|.
T Consensus 219 ~~~n~~qrg~ 228 (289)
T COG5495 219 ALENTLQRGQ 228 (289)
T ss_pred HHHHHHHhhh
Confidence 3333334443
No 156
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=97.61 E-value=0.00014 Score=76.79 Aligned_cols=94 Identities=17% Similarity=0.090 Sum_probs=63.8
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHH---HcCceecCCCcCCHhhhhccCCeEEEecc
Q 007951 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR---AAGFTEENGTLGDIYETISGSDLVLLLIS 187 (583)
Q Consensus 111 ikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~---~~G~~~~d~t~~d~~Eav~~ADIVILavp 187 (583)
-+++||||+|.||..+++.|.... ...+|.++++..++..+.+. +.|+.. ..+.+.+|++++||+|+.|||
T Consensus 128 ~~~lgiiG~G~qA~~~l~al~~~~----~~~~v~V~~r~~~~~~~~~~~~~~~g~~v--~~~~~~~eav~~aDiVitaT~ 201 (325)
T TIGR02371 128 SSVLGIIGAGRQAWTQLEALSRVF----DLEEVSVYCRTPSTREKFALRASDYEVPV--RAATDPREAVEGCDILVTTTP 201 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcC----CCCEEEEECCCHHHHHHHHHHHHhhCCcE--EEeCCHHHHhccCCEEEEecC
Confidence 378999999999999998887641 12367777776554443333 345321 115789999999999999998
Q ss_pred chHHHHHHHHHHhcCCCCcEEEEecCc
Q 007951 188 DAAQADNYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 188 d~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
... .++. ...+|||+.|.-++..
T Consensus 202 s~~--P~~~--~~~l~~g~~v~~vGs~ 224 (325)
T TIGR02371 202 SRK--PVVK--ADWVSEGTHINAIGAD 224 (325)
T ss_pred CCC--cEec--HHHcCCCCEEEecCCC
Confidence 642 2332 2356899987755544
No 157
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=97.60 E-value=0.0008 Score=72.94 Aligned_cols=199 Identities=17% Similarity=0.191 Sum_probs=115.1
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCccc-------------------HHHHHHcC-ceecCCCcCC
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS-------------------FAEARAAG-FTEENGTLGD 171 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s-------------------~~~A~~~G-~~~~d~t~~d 171 (583)
.+|+|||+|-+|..+|..+.++ |++| +|.+.+++. .+.+.+.| +.. +++
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~------G~~V-iG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lra----Ttd 78 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASA------GFKV-IGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRA----TTD 78 (436)
T ss_pred eEEEEEccccccHHHHHHHHHc------CCce-EeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceE----ecC
Confidence 7899999999999999999988 8886 566655422 23455666 332 345
Q ss_pred HhhhhccCCeEEEeccchH----------HHHHHHHHHhcCCCCcEEEEe----cCch---hh-hhhc-ccccCCCCccE
Q 007951 172 IYETISGSDLVLLLISDAA----------QADNYEKIFSCMKPNSILGLS----HGFL---LG-HLQS-MGLDFPKNIGV 232 (583)
Q Consensus 172 ~~Eav~~ADIVILavpd~a----------~~~Vl~eI~~~Lk~GaiL~~a----~G~~---i~-~ie~-~~i~~p~dv~V 232 (583)
..+ ++.||++++|||... .....+.|++.|++|++|++= .|.. +. .++. .++.++.|+.+
T Consensus 79 ~~~-l~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~l 157 (436)
T COG0677 79 PEE-LKECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYL 157 (436)
T ss_pred hhh-cccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeE
Confidence 544 459999999998421 123445799999999987643 4443 11 1222 44566555443
Q ss_pred EEecc--CCCchhhHHhHhccccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhHh
Q 007951 233 IAVCP--KGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILL 310 (583)
Q Consensus 233 I~v~P--ngPg~~vR~lf~~G~e~~G~Gv~aliAv~qd~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvLs 310 (583)
. -+| -.||...+++-. .+-+|. ..+++..+.+.++-+.+=.+.+..|+... -++-...|-+ -=
T Consensus 158 a-ysPERv~PG~~~~el~~---------~~kVIg---G~tp~~~e~a~~lY~~iv~~~~~vts~~t-AEm~Kl~EN~-fR 222 (436)
T COG0677 158 A-YSPERVLPGNVLKELVN---------NPKVIG---GVTPKCAELAAALYKTIVEGVIPVTSART-AEMVKLTENT-FR 222 (436)
T ss_pred e-eCccccCCCchhhhhhc---------CCceee---cCCHHHHHHHHHHHHHheEEEEEcCChHH-HHHHHHHhhh-hh
Confidence 3 334 344666443322 333333 35778888888888887654333333221 1111111111 00
Q ss_pred hHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 007951 311 GAVHGIVESLFRRFTENGMNEDLAYKN 337 (583)
Q Consensus 311 G~~pAlieAl~d~~Ve~Gl~~e~A~~~ 337 (583)
-.=-||+.-+.-.+-+.|++--++...
T Consensus 223 dVNIALaNElali~~~~GIdvwevIea 249 (436)
T COG0677 223 DVNIALANELALICNAMGIDVWEVIEA 249 (436)
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 001236666666667788886666554
No 158
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=97.60 E-value=9.2e-05 Score=68.42 Aligned_cols=99 Identities=20% Similarity=0.160 Sum_probs=67.1
Q ss_pred hhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHHcCce-ecCCCcCCHhhhhccCCeEE
Q 007951 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFT-EENGTLGDIYETISGSDLVL 183 (583)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~~~A~~~G~~-~~d~t~~d~~Eav~~ADIVI 183 (583)
..+++ +++.|||.|-+|.+++..|.+. |. +|.+.+|+.++..+.+...+-. ..-....+..+.+.++|+||
T Consensus 8 ~~l~~-~~vlviGaGg~ar~v~~~L~~~------g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI 80 (135)
T PF01488_consen 8 GDLKG-KRVLVIGAGGAARAVAAALAAL------GAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVI 80 (135)
T ss_dssp STGTT-SEEEEESSSHHHHHHHHHHHHT------TSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEE
T ss_pred CCcCC-CEEEEECCHHHHHHHHHHHHHc------CCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEE
Confidence 46788 9999999999999999999998 87 4888999877777777766211 00001445667889999999
Q ss_pred EeccchHHHHHHHHHHhcCCCC-cEEEEec
Q 007951 184 LLISDAAQADNYEKIFSCMKPN-SILGLSH 212 (583)
Q Consensus 184 Lavpd~a~~~Vl~eI~~~Lk~G-aiL~~a~ 212 (583)
.+||-... .+-++..+...+. .+++|.+
T Consensus 81 ~aT~~~~~-~i~~~~~~~~~~~~~~v~Dla 109 (135)
T PF01488_consen 81 NATPSGMP-IITEEMLKKASKKLRLVIDLA 109 (135)
T ss_dssp E-SSTTST-SSTHHHHTTTCHHCSEEEES-
T ss_pred EecCCCCc-ccCHHHHHHHHhhhhceeccc
Confidence 99997655 1222333222221 3677763
No 159
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=97.54 E-value=0.0002 Score=70.70 Aligned_cols=71 Identities=21% Similarity=0.162 Sum_probs=50.1
Q ss_pred hhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhc-cCCeEE
Q 007951 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-GSDLVL 183 (583)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~-~ADIVI 183 (583)
...++| |+|+|+|+|+||.++|+.|.+. |.+|++.+++..+..+.+...|... .+..++.. ++|+++
T Consensus 23 ~~~l~g-k~v~I~G~G~vG~~~A~~L~~~------G~~Vvv~D~~~~~~~~~~~~~g~~~-----v~~~~l~~~~~Dv~v 90 (200)
T cd01075 23 TDSLEG-KTVAVQGLGKVGYKLAEHLLEE------GAKLIVADINEEAVARAAELFGATV-----VAPEEIYSVDADVFA 90 (200)
T ss_pred CCCCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEcCCHHHHHHHHHHcCCEE-----EcchhhccccCCEEE
Confidence 456789 9999999999999999999998 9988766554333233333436542 23445543 799999
Q ss_pred Eecc
Q 007951 184 LLIS 187 (583)
Q Consensus 184 Lavp 187 (583)
.+..
T Consensus 91 p~A~ 94 (200)
T cd01075 91 PCAL 94 (200)
T ss_pred eccc
Confidence 6655
No 160
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=97.52 E-value=0.00017 Score=78.72 Aligned_cols=74 Identities=23% Similarity=0.314 Sum_probs=57.0
Q ss_pred hcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEec
Q 007951 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (583)
Q Consensus 108 l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILav 186 (583)
+.+ ++|+|||+|.||..+++.|+.. |. +|++.+|..++..+.+.+.|.... ...+..+++.++|+||.+|
T Consensus 180 ~~~-~~vlViGaG~iG~~~a~~L~~~------G~~~V~v~~r~~~ra~~la~~~g~~~~--~~~~~~~~l~~aDvVI~aT 250 (423)
T PRK00045 180 LSG-KKVLVIGAGEMGELVAKHLAEK------GVRKITVANRTLERAEELAEEFGGEAI--PLDELPEALAEADIVISST 250 (423)
T ss_pred ccC-CEEEEECchHHHHHHHHHHHHC------CCCeEEEEeCCHHHHHHHHHHcCCcEe--eHHHHHHHhccCCEEEECC
Confidence 678 9999999999999999999987 87 777888876665667777664210 1235667889999999999
Q ss_pred cchH
Q 007951 187 SDAA 190 (583)
Q Consensus 187 pd~a 190 (583)
+...
T Consensus 251 ~s~~ 254 (423)
T PRK00045 251 GAPH 254 (423)
T ss_pred CCCC
Confidence 8443
No 161
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.50 E-value=0.00026 Score=73.90 Aligned_cols=77 Identities=22% Similarity=0.279 Sum_probs=60.2
Q ss_pred hhcCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 107 ~l~gikkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
.++| |+|+|||. |.||..+|..|.+. |..|.++.. + +.+..+.+++||+||.+
T Consensus 155 ~l~G-k~v~vIG~S~ivG~Pla~lL~~~------gatVtv~~s---~----------------t~~l~~~~~~ADIVI~a 208 (284)
T PRK14179 155 ELEG-KHAVVIGRSNIVGKPMAQLLLDK------NATVTLTHS---R----------------TRNLAEVARKADILVVA 208 (284)
T ss_pred CCCC-CEEEEECCCCcCcHHHHHHHHHC------CCEEEEECC---C----------------CCCHHHHHhhCCEEEEe
Confidence 4788 99999999 99999999999988 888877521 1 22567889999999999
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEecCch
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~~ 215 (583)
++..... +. ..+++|++|+|+ |++
T Consensus 209 vg~~~~v---~~--~~ik~GavVIDv-gin 232 (284)
T PRK14179 209 IGRGHFV---TK--EFVKEGAVVIDV-GMN 232 (284)
T ss_pred cCccccC---CH--HHccCCcEEEEe-cce
Confidence 9976552 21 238999998887 443
No 162
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=97.45 E-value=0.00065 Score=69.45 Aligned_cols=96 Identities=16% Similarity=0.263 Sum_probs=63.9
Q ss_pred CEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccchH
Q 007951 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (583)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~a 190 (583)
+||+|||+ |.||..++..+.+. .+++++...+.+..........|+.. ..+.+++++++|+|+.++||..
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~-----~~~elvav~d~~~~~~~~~~~~~i~~----~~dl~~ll~~~DvVid~t~p~~ 72 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAA-----EDLELVAAVDRPGSPLVGQGALGVAI----TDDLEAVLADADVLIDFTTPEA 72 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhC-----CCCEEEEEEecCCccccccCCCCccc----cCCHHHhccCCCEEEECCCHHH
Confidence 68999998 99999999888764 15666555554332222223334432 4678888888999999999998
Q ss_pred HHHHHHHHHhcCCCCc-EEEEecCchhhhh
Q 007951 191 QADNYEKIFSCMKPNS-ILGLSHGFLLGHL 219 (583)
Q Consensus 191 ~~~Vl~eI~~~Lk~Ga-iL~~a~G~~i~~i 219 (583)
..+++.... +.|. +|+-..|++....
T Consensus 73 ~~~~~~~al---~~G~~vvigttG~s~~~~ 99 (257)
T PRK00048 73 TLENLEFAL---EHGKPLVIGTTGFTEEQL 99 (257)
T ss_pred HHHHHHHHH---HcCCCEEEECCCCCHHHH
Confidence 877766543 3454 3433567764433
No 163
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=97.35 E-value=0.00059 Score=62.36 Aligned_cols=113 Identities=19% Similarity=0.291 Sum_probs=67.1
Q ss_pred CEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccH---HHHH-----HcCceecCCCcCCHhhhhccCCeE
Q 007951 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF---AEAR-----AAGFTEENGTLGDIYETISGSDLV 182 (583)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~---~~A~-----~~G~~~~d~t~~d~~Eav~~ADIV 182 (583)
+||+|+|+ |.||..+++.+.+. .++++..+.+...... +... ..|+.. ..+.++++..+|+|
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~-----~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v----~~~l~~~~~~~DVv 71 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILES-----PGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPV----TDDLEELLEEADVV 71 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHS-----TTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBE----BS-HHHHTTH-SEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhc-----CCcEEEEEEecCCcccccchhhhhhCcCCccccc----chhHHHhcccCCEE
Confidence 58999999 99999999999984 1777665555433100 1111 233333 46788999999999
Q ss_pred EEeccchHHHHHHHHHHhcCCCCc-EEEEecCchhhhhhcccccCCCCccEEEeccC
Q 007951 183 LLLISDAAQADNYEKIFSCMKPNS-ILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPK 238 (583)
Q Consensus 183 ILavpd~a~~~Vl~eI~~~Lk~Ga-iL~~a~G~~i~~ie~~~i~~p~dv~VI~v~Pn 238 (583)
|-.+-|+...+.++....+ |. +|+=..|++-..++. ...+.+.+.++ ..||
T Consensus 72 IDfT~p~~~~~~~~~~~~~---g~~~ViGTTG~~~~~~~~-l~~~a~~~~vl-~a~N 123 (124)
T PF01113_consen 72 IDFTNPDAVYDNLEYALKH---GVPLVIGTTGFSDEQIDE-LEELAKKIPVL-IAPN 123 (124)
T ss_dssp EEES-HHHHHHHHHHHHHH---T-EEEEE-SSSHHHHHHH-HHHHTTTSEEE-E-SS
T ss_pred EEcCChHHhHHHHHHHHhC---CCCEEEECCCCCHHHHHH-HHHHhccCCEE-EeCC
Confidence 9999888777777765443 44 566688987332221 00123445555 5565
No 164
>PRK07340 ornithine cyclodeaminase; Validated
Probab=97.33 E-value=0.00055 Score=71.71 Aligned_cols=91 Identities=21% Similarity=0.165 Sum_probs=65.6
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHHc---CceecCCCcCCHhhhhccCCeEEEecc
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA---GFTEENGTLGDIYETISGSDLVLLLIS 187 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~~~A~~~---G~~~~d~t~~d~~Eav~~ADIVILavp 187 (583)
++|+|||+|.||..++..+... .++ +|.++.|..++..+.+.+. ++... +.+.++++.++|+|+.+||
T Consensus 126 ~~v~IiGaG~qa~~~~~al~~~-----~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~---~~~~~~av~~aDiVitaT~ 197 (304)
T PRK07340 126 GDLLLIGTGVQARAHLEAFAAG-----LPVRRVWVRGRTAASAAAFCAHARALGPTAE---PLDGEAIPEAVDLVVTATT 197 (304)
T ss_pred CEEEEECCcHHHHHHHHHHHHh-----CCCCEEEEEcCCHHHHHHHHHHHHhcCCeeE---ECCHHHHhhcCCEEEEccC
Confidence 8999999999999999999753 144 6777887766555555544 33320 3578889999999999999
Q ss_pred chHHHHHHHHHHhcCCCCcEEEEecCch
Q 007951 188 DAAQADNYEKIFSCMKPNSILGLSHGFL 215 (583)
Q Consensus 188 d~a~~~Vl~eI~~~Lk~GaiL~~a~G~~ 215 (583)
... .++.. .+|||+.|.-.....
T Consensus 198 s~~--Pl~~~---~~~~g~hi~~iGs~~ 220 (304)
T PRK07340 198 SRT--PVYPE---AARAGRLVVAVGAFT 220 (304)
T ss_pred CCC--ceeCc---cCCCCCEEEecCCCC
Confidence 764 34432 478998877665443
No 165
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=97.31 E-value=0.00068 Score=72.20 Aligned_cols=95 Identities=21% Similarity=0.260 Sum_probs=68.3
Q ss_pred CCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHH---HcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEAR---AAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 110 gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~~~A~---~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
+...++|||+|.|+..|++.++.- +++ +|.|+.|..+...+.+. +.+... -..+.+.++++++||+|+-+
T Consensus 129 da~~laiIGaG~qA~~ql~a~~~v-----~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~-v~a~~s~~~av~~aDiIvt~ 202 (330)
T COG2423 129 DASTLAIIGAGAQARTQLEALKAV-----RDIREIRVYSRDPEAAEAFAARLRKRGGEA-VGAADSAEEAVEGADIVVTA 202 (330)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhh-----CCccEEEEEcCCHHHHHHHHHHHHhhcCcc-ceeccCHHHHhhcCCEEEEe
Confidence 447899999999999999999875 244 67788877655444442 333210 12267889999999999999
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEecCc
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
||... .++. ...++||+.|.-+.+.
T Consensus 203 T~s~~--Pil~--~~~l~~G~hI~aiGad 227 (330)
T COG2423 203 TPSTE--PVLK--AEWLKPGTHINAIGAD 227 (330)
T ss_pred cCCCC--Ceec--HhhcCCCcEEEecCCC
Confidence 99876 3443 3457899988766654
No 166
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=97.28 E-value=0.00045 Score=75.40 Aligned_cols=75 Identities=20% Similarity=0.230 Sum_probs=57.2
Q ss_pred hhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCC-ceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 107 ~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G-~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
.+.| ++|+|||+|.||..+++.|+.. | .+|++.+|..++..+.+.+.|.... ...+..+++.++|+||.+
T Consensus 177 ~l~~-~~VlViGaG~iG~~~a~~L~~~------G~~~V~v~~rs~~ra~~la~~~g~~~i--~~~~l~~~l~~aDvVi~a 247 (417)
T TIGR01035 177 SLKG-KKALLIGAGEMGELVAKHLLRK------GVGKILIANRTYERAEDLAKELGGEAV--KFEDLEEYLAEADIVISS 247 (417)
T ss_pred CccC-CEEEEECChHHHHHHHHHHHHC------CCCEEEEEeCCHHHHHHHHHHcCCeEe--eHHHHHHHHhhCCEEEEC
Confidence 3678 9999999999999999999987 8 4788888776555566766664310 124566888999999999
Q ss_pred ccchH
Q 007951 186 ISDAA 190 (583)
Q Consensus 186 vpd~a 190 (583)
|+...
T Consensus 248 T~s~~ 252 (417)
T TIGR01035 248 TGAPH 252 (417)
T ss_pred CCCCC
Confidence 97443
No 167
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=97.25 E-value=0.0013 Score=67.55 Aligned_cols=90 Identities=22% Similarity=0.230 Sum_probs=56.0
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHH--cCceecCCCcCCHhhhhccCCeEEEeccch
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA--AGFTEENGTLGDIYETISGSDLVLLLISDA 189 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~--~G~~~~d~t~~d~~Eav~~ADIVILavpd~ 189 (583)
+||||||+|.||..+++.|.+. .+.++......+....+.... .+... +.+.+++..+.|+|+.|+|+.
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~-----~~~~l~~v~~~~~~~~~~~~~~~~~~~~----~~d~~~l~~~~DvVve~t~~~ 72 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHD-----PDLRVDWVIVPEHSIDAVRRALGEAVRV----VSSVDALPQRPDLVVECAGHA 72 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhC-----CCceEEEEEEcCCCHHHHhhhhccCCee----eCCHHHhccCCCEEEECCCHH
Confidence 6899999999999999999864 134433332222111111111 24433 467777645699999999999
Q ss_pred HHHHHHHHHHhcCCCCc-EEEEecC
Q 007951 190 AQADNYEKIFSCMKPNS-ILGLSHG 213 (583)
Q Consensus 190 a~~~Vl~eI~~~Lk~Ga-iL~~a~G 213 (583)
.+.++...+ |+.|+ +++...|
T Consensus 73 ~~~e~~~~a---L~aGk~Vvi~s~~ 94 (265)
T PRK13303 73 ALKEHVVPI---LKAGIDCAVISVG 94 (265)
T ss_pred HHHHHHHHH---HHcCCCEEEeChH
Confidence 887766654 34555 3444444
No 168
>PRK06223 malate dehydrogenase; Reviewed
Probab=97.22 E-value=0.0023 Score=66.39 Aligned_cols=69 Identities=25% Similarity=0.239 Sum_probs=43.4
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHH--cCceec--CC---CcCCHhhhhccCCeE
Q 007951 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA--AGFTEE--NG---TLGDIYETISGSDLV 182 (583)
Q Consensus 111 ikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~~~A~~--~G~~~~--d~---t~~d~~Eav~~ADIV 182 (583)
++||+|||.|.||..+|..+... |+ ++++.+...+.....+.. ...... .. ...+. +.+++||+|
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~------~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiV 74 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALK------ELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVV 74 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC------CCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEE
Confidence 48999999999999999998876 54 777766543322222211 111100 00 02344 568999999
Q ss_pred EEec
Q 007951 183 LLLI 186 (583)
Q Consensus 183 ILav 186 (583)
|+++
T Consensus 75 ii~~ 78 (307)
T PRK06223 75 VITA 78 (307)
T ss_pred EECC
Confidence 9986
No 169
>PRK08618 ornithine cyclodeaminase; Validated
Probab=97.20 E-value=0.0012 Score=69.64 Aligned_cols=92 Identities=18% Similarity=0.235 Sum_probs=64.2
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHH----cCceecCCCcCCHhhhhccCCeEEEec
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLLLI 186 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~~~A~~----~G~~~~d~t~~d~~Eav~~ADIVILav 186 (583)
++++|||+|.||..++..+... .++ +|.+..|..++..+.+.+ .++.. ..+.+.+++++++|+|+.+|
T Consensus 128 ~~v~iiGaG~~a~~~~~al~~~-----~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~aDiVi~aT 200 (325)
T PRK08618 128 KTLCLIGTGGQAKGQLEAVLAV-----RDIERVRVYSRTFEKAYAFAQEIQSKFNTEI--YVVNSADEAIEEADIIVTVT 200 (325)
T ss_pred cEEEEECCcHHHHHHHHHHHhc-----CCccEEEEECCCHHHHHHHHHHHHHhcCCcE--EEeCCHHHHHhcCCEEEEcc
Confidence 7899999999999999887643 144 667777765554444442 34421 11567889999999999999
Q ss_pred cchHHHHHHHHHHhcCCCCcEEEEecCch
Q 007951 187 SDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (583)
Q Consensus 187 pd~a~~~Vl~eI~~~Lk~GaiL~~a~G~~ 215 (583)
|-. + .++. ..+++|+.|.-+..+.
T Consensus 201 ~s~-~-p~i~---~~l~~G~hV~~iGs~~ 224 (325)
T PRK08618 201 NAK-T-PVFS---EKLKKGVHINAVGSFM 224 (325)
T ss_pred CCC-C-cchH---HhcCCCcEEEecCCCC
Confidence 965 2 3443 5679999887665543
No 170
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=97.19 E-value=0.001 Score=60.13 Aligned_cols=92 Identities=18% Similarity=0.235 Sum_probs=58.7
Q ss_pred EEEEEc-cchhHHHHHHHHHHhhhhhcCCceEEE-EecCC--cccHHHHHH--cCceecCCCcC-CHhhhhccCCeEEEe
Q 007951 113 QIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKV-GLRKG--SRSFAEARA--AGFTEENGTLG-DIYETISGSDLVLLL 185 (583)
Q Consensus 113 kIgIIG-~G~mG~A~A~nLrdsl~~~g~G~~ViV-g~r~~--s~s~~~A~~--~G~~~~d~t~~-d~~Eav~~ADIVILa 185 (583)
||+||| .|.+|..+.+.|.+. + .++++. ..++. .+.+..... .++.. -.+. ...+.+.++|+||+|
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~h-p----~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~Dvvf~a 73 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEH-P----DFELVALVSSSRSAGKPLSEVFPHPKGFED--LSVEDADPEELSDVDVVFLA 73 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT-S----TEEEEEEEESTTTTTSBHHHTTGGGTTTEE--EBEEETSGHHHTTESEEEE-
T ss_pred CEEEECCCCHHHHHHHHHHhcC-C----CccEEEeeeeccccCCeeehhccccccccc--eeEeecchhHhhcCCEEEec
Confidence 799999 999999999999885 1 344333 23332 123333211 11211 0011 133456899999999
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEecCc
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
+|+....++.+.+ +++|..|++.++-
T Consensus 74 ~~~~~~~~~~~~~---~~~g~~ViD~s~~ 99 (121)
T PF01118_consen 74 LPHGASKELAPKL---LKAGIKVIDLSGD 99 (121)
T ss_dssp SCHHHHHHHHHHH---HHTTSEEEESSST
T ss_pred CchhHHHHHHHHH---hhCCcEEEeCCHH
Confidence 9999998888876 4678888888774
No 171
>PLN00203 glutamyl-tRNA reductase
Probab=97.19 E-value=0.0013 Score=73.88 Aligned_cols=85 Identities=18% Similarity=0.126 Sum_probs=60.1
Q ss_pred hcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHHcC-ceecCCCcCCHhhhhccCCeEEEe
Q 007951 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAG-FTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 108 l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~~~A~~~G-~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
+.+ ++|+|||.|.||..++.+|... |. +|++.+|...+....+.+.+ ....-....+..+++.++|+||.+
T Consensus 264 l~~-kkVlVIGAG~mG~~~a~~L~~~------G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsA 336 (519)
T PLN00203 264 HAS-ARVLVIGAGKMGKLLVKHLVSK------GCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTS 336 (519)
T ss_pred CCC-CEEEEEeCHHHHHHHHHHHHhC------CCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEc
Confidence 667 9999999999999999999987 86 68888887666666666542 210000134567889999999999
Q ss_pred ccc---hHHHHHHHHHH
Q 007951 186 ISD---AAQADNYEKIF 199 (583)
Q Consensus 186 vpd---~a~~~Vl~eI~ 199 (583)
|+- -...+.++++.
T Consensus 337 T~s~~pvI~~e~l~~~~ 353 (519)
T PLN00203 337 TSSETPLFLKEHVEALP 353 (519)
T ss_pred cCCCCCeeCHHHHHHhh
Confidence 863 22345555543
No 172
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=97.18 E-value=0.00083 Score=70.44 Aligned_cols=94 Identities=13% Similarity=0.140 Sum_probs=65.5
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHH----cCceecCCCcCCHhhhhccCCeEEEe
Q 007951 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 111 ikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~~~A~~----~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
-++++|||.|.||..+++.+..- ..+ +|.++.|..++..+.+.+ .|+.. ..+.+.++++.+||||+.+
T Consensus 117 a~~l~iiGaG~QA~~~~~a~~~v-----~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v--~~~~~~~eav~~aDIV~ta 189 (301)
T PRK06407 117 VENFTIIGSGFQAETQLEGMASV-----YNPKRIRVYSRNFDHARAFAERFSKEFGVDI--RPVDNAEAALRDADTITSI 189 (301)
T ss_pred CcEEEEECCcHHHHHHHHHHHhc-----CCCCEEEEECCCHHHHHHHHHHHHHhcCCcE--EEeCCHHHHHhcCCEEEEe
Confidence 38899999999999999998864 144 677887776655544433 24321 1156899999999999999
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEecCch
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~~ 215 (583)
|+-.. .+++ ...++||+.|.-+..+.
T Consensus 190 T~s~~--P~~~--~~~l~pg~hV~aiGs~~ 215 (301)
T PRK06407 190 TNSDT--PIFN--RKYLGDEYHVNLAGSNY 215 (301)
T ss_pred cCCCC--cEec--HHHcCCCceEEecCCCC
Confidence 99543 3443 23578898776555443
No 173
>PRK07589 ornithine cyclodeaminase; Validated
Probab=97.17 E-value=0.00086 Score=71.84 Aligned_cols=97 Identities=18% Similarity=0.204 Sum_probs=65.3
Q ss_pred CCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHH---cCceecCCCcCCHhhhhccCCeEEEe
Q 007951 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA---AGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 110 gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~~~A~~---~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
+-++++|||.|.||..+++.+..- ..+ +|.++.|..++..+.+.+ .|+.. ..+.+.++++++||+|+.+
T Consensus 128 da~~l~iiGaG~QA~~~l~a~~~v-----r~i~~V~v~~r~~~~a~~~~~~~~~~~~~v--~~~~~~~~av~~ADIIvta 200 (346)
T PRK07589 128 DSRTMALIGNGAQSEFQALAFKAL-----LGIEEIRLYDIDPAATAKLARNLAGPGLRI--VACRSVAEAVEGADIITTV 200 (346)
T ss_pred CCcEEEEECCcHHHHHHHHHHHHh-----CCceEEEEEeCCHHHHHHHHHHHHhcCCcE--EEeCCHHHHHhcCCEEEEe
Confidence 337899999999999999888764 134 677887775544433332 24321 0156899999999999999
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEecCch
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~~ 215 (583)
|+......+++ .+.++||+.|.-...+.
T Consensus 201 T~S~~~~Pvl~--~~~lkpG~hV~aIGs~~ 228 (346)
T PRK07589 201 TADKTNATILT--DDMVEPGMHINAVGGDC 228 (346)
T ss_pred cCCCCCCceec--HHHcCCCcEEEecCCCC
Confidence 97543223444 13578999876555443
No 174
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=97.17 E-value=0.0015 Score=66.51 Aligned_cols=153 Identities=16% Similarity=0.214 Sum_probs=102.9
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHH-----------cCceec-C------------
Q 007951 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----------AGFTEE-N------------ 166 (583)
Q Consensus 111 ikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~-----------~G~~~~-d------------ 166 (583)
++.++|||.|.||..+|+-...+ |++|.+.++.. +...+|.+ .+.... -
T Consensus 11 ~~~V~ivGaG~MGSGIAQv~a~s------g~~V~l~d~~~-~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~r 83 (298)
T KOG2304|consen 11 IKNVAIVGAGQMGSGIAQVAATS------GLNVWLVDANE-DALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDR 83 (298)
T ss_pred ccceEEEcccccchhHHHHHHhc------CCceEEecCCH-HHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHH
Confidence 47899999999999999999888 99987766543 23333322 122110 0
Q ss_pred -CCcCCHhhhhccCCeEEEeccchHH--HHHHHHHHhcCCCCcEEE-EecCchhhhhhcccccCCCCccEEEeccCCCch
Q 007951 167 -GTLGDIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGP 242 (583)
Q Consensus 167 -~t~~d~~Eav~~ADIVILavpd~a~--~~Vl~eI~~~Lk~GaiL~-~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~ 242 (583)
.+..+..++++++|+||=++-.+.- .+++++|-..-++.+++. -.+.+.+..+.. .....-.|.+.|=--|.+
T Consensus 84 i~~~tnv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSSl~lt~ia~---~~~~~srf~GlHFfNPvP 160 (298)
T KOG2304|consen 84 IKTSTNVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSSLSLTDIAS---ATQRPSRFAGLHFFNPVP 160 (298)
T ss_pred HHHcCCHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccceeHHHHHh---hccChhhhceeeccCCch
Confidence 1145677889999999876654332 346667766677887764 667777776644 333345677888777777
Q ss_pred hhHHhHhccccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 007951 243 SVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (583)
Q Consensus 243 ~vR~lf~~G~e~~G~Gv~aliAv~qd~sgeale~a~ala~aIG~~ 287 (583)
++. +.+ +.-+.+.+++.......+.+++|..
T Consensus 161 vMK-LvE-------------Vir~~~TS~eTf~~l~~f~k~~gKt 191 (298)
T KOG2304|consen 161 VMK-LVE-------------VIRTDDTSDETFNALVDFGKAVGKT 191 (298)
T ss_pred hHH-Hhh-------------hhcCCCCCHHHHHHHHHHHHHhCCC
Confidence 752 221 2336788899999999999999975
No 175
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=97.13 E-value=0.0019 Score=69.56 Aligned_cols=98 Identities=15% Similarity=0.109 Sum_probs=64.4
Q ss_pred hcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceec-C-CCcCCHhhhhccCCeEEEe
Q 007951 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-N-GTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 108 l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~-d-~t~~d~~Eav~~ADIVILa 185 (583)
+.+ .+|.|||.|.+|...++.++.. |.+|++.+++..+....+...|.... . ....+..+.++++|+||.+
T Consensus 165 l~~-~~VlViGaG~vG~~aa~~a~~l------Ga~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a 237 (370)
T TIGR00518 165 VEP-GDVTIIGGGVVGTNAAKMANGL------GATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGA 237 (370)
T ss_pred CCC-ceEEEEcCCHHHHHHHHHHHHC------CCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEc
Confidence 345 7899999999999999999987 88887776654433333334443210 0 0012356778999999999
Q ss_pred ccc--hHHHHHH-HHHHhcCCCCcEEEEec
Q 007951 186 ISD--AAQADNY-EKIFSCMKPNSILGLSH 212 (583)
Q Consensus 186 vpd--~a~~~Vl-~eI~~~Lk~GaiL~~a~ 212 (583)
++. .....++ ++....+++|.+|++.+
T Consensus 238 ~~~~g~~~p~lit~~~l~~mk~g~vIvDva 267 (370)
T TIGR00518 238 VLIPGAKAPKLVSNSLVAQMKPGAVIVDVA 267 (370)
T ss_pred cccCCCCCCcCcCHHHHhcCCCCCEEEEEe
Confidence 742 2223333 45566789999888764
No 176
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=97.11 E-value=0.0012 Score=70.11 Aligned_cols=87 Identities=10% Similarity=0.156 Sum_probs=56.6
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccchHH
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~a~ 191 (583)
.+|+|||+|+||..++..+.+. .+++++...+.+... ......+... ..+..+++.+.|+|++|+|+..+
T Consensus 4 IRVgIVG~GnIGr~~a~al~~~-----pd~ELVgV~dr~~~~-~~~~~~~v~~----~~d~~e~l~~iDVViIctPs~th 73 (324)
T TIGR01921 4 IRAAIVGYGNLGRSVEKAIQQQ-----PDMELVGVFSRRGAE-TLDTETPVYA----VADDEKHLDDVDVLILCMGSATD 73 (324)
T ss_pred cEEEEEeecHHHHHHHHHHHhC-----CCcEEEEEEcCCcHH-HHhhcCCccc----cCCHHHhccCCCEEEEcCCCccC
Confidence 5899999999999999999865 156655434443211 1222234332 35677778899999999998877
Q ss_pred HHHHHHHHhcCCCCcEEEEe
Q 007951 192 ADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 192 ~~Vl~eI~~~Lk~GaiL~~a 211 (583)
.+.. .+.|+.|.-++++
T Consensus 74 ~~~~---~~~L~aG~NVV~s 90 (324)
T TIGR01921 74 IPEQ---APYFAQFANTVDS 90 (324)
T ss_pred HHHH---HHHHHcCCCEEEC
Confidence 5444 3445566544443
No 177
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=97.10 E-value=0.004 Score=64.11 Aligned_cols=94 Identities=12% Similarity=0.169 Sum_probs=61.8
Q ss_pred CEEEEEc-cchhHHHHHHHHHHhhhhhcCCceEEEEec-CCccc--HHHHHH-----cCceecCCCcCCHhhhhccCCeE
Q 007951 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLR-KGSRS--FAEARA-----AGFTEENGTLGDIYETISGSDLV 182 (583)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r-~~s~s--~~~A~~-----~G~~~~d~t~~d~~Eav~~ADIV 182 (583)
+||+||| +|.||..+++.+.+. .+++++...+ .++.. .+.+.. .|+.. +.+++++...+|+|
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~-----~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~----~~d~~~l~~~~DvV 72 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAA-----EGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPV----TDDLEAVETDPDVL 72 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhC-----CCCEEEEEEecCCccccCCCHHHhcCcCcCCcee----eCCHHHhcCCCCEE
Confidence 6899999 699999999999864 1677665554 33221 122222 23332 45677775579999
Q ss_pred EEeccchHHHHHHHHHHhcCCCCc-EEEEecCchhh
Q 007951 183 LLLISDAAQADNYEKIFSCMKPNS-ILGLSHGFLLG 217 (583)
Q Consensus 183 ILavpd~a~~~Vl~eI~~~Lk~Ga-iL~~a~G~~i~ 217 (583)
|.++||..+.+++.... +.|. +|+-..|++..
T Consensus 73 IdfT~p~~~~~~~~~al---~~g~~vVigttg~~~e 105 (266)
T TIGR00036 73 IDFTTPEGVLNHLKFAL---EHGVRLVVGTTGFSEE 105 (266)
T ss_pred EECCChHHHHHHHHHHH---HCCCCEEEECCCCCHH
Confidence 99999998887777543 3444 45445687644
No 178
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=97.08 E-value=0.0011 Score=64.24 Aligned_cols=96 Identities=21% Similarity=0.156 Sum_probs=61.8
Q ss_pred hhcCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHc----Cc--eecC-CCcCCHhhhhcc
Q 007951 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----GF--TEEN-GTLGDIYETISG 178 (583)
Q Consensus 107 ~l~gikkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~----G~--~~~d-~t~~d~~Eav~~ 178 (583)
.+++ +++.|+|. |.+|.+++..|.+. |.+|++..|..++..+.+... +. ...+ ....+..+++++
T Consensus 25 ~l~~-~~vlVlGgtG~iG~~~a~~l~~~------g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (194)
T cd01078 25 DLKG-KTAVVLGGTGPVGQRAAVLLARE------GARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKG 97 (194)
T ss_pred CCCC-CEEEEECCCCHHHHHHHHHHHHC------CCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhc
Confidence 4678 99999996 99999999999987 888887777644433333322 21 1100 001223477889
Q ss_pred CCeEEEeccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 179 ADIVILavpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
+|+||.++|.... .........+++.++.|.
T Consensus 98 ~diVi~at~~g~~--~~~~~~~~~~~~~vv~D~ 128 (194)
T cd01078 98 ADVVFAAGAAGVE--LLEKLAWAPKPLAVAADV 128 (194)
T ss_pred CCEEEECCCCCce--echhhhcccCceeEEEEc
Confidence 9999999997775 111222344567777766
No 179
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=97.07 E-value=0.0033 Score=65.98 Aligned_cols=66 Identities=18% Similarity=0.175 Sum_probs=43.3
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHH----------cCceecCCCcCCHhhhhccCC
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA----------AGFTEENGTLGDIYETISGSD 180 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~~~A~~----------~G~~~~d~t~~d~~Eav~~AD 180 (583)
+||+|||.|.||..+|..+... |+ +|++.+.........+.. .+... ...+.++ +++||
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~------g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~---~t~d~~~-~~~aD 71 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEK------ELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVT---GTNNYAD-TANSD 71 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHc------CCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEE---ecCCHHH-hCCCC
Confidence 6899999999999999999876 65 766655533221112210 01110 1245655 78999
Q ss_pred eEEEecc
Q 007951 181 LVLLLIS 187 (583)
Q Consensus 181 IVILavp 187 (583)
+||++.+
T Consensus 72 iVIitag 78 (305)
T TIGR01763 72 IVVITAG 78 (305)
T ss_pred EEEEcCC
Confidence 9999987
No 180
>PRK06046 alanine dehydrogenase; Validated
Probab=97.05 E-value=0.0014 Score=69.22 Aligned_cols=91 Identities=20% Similarity=0.184 Sum_probs=59.8
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHH----cCceecCCCcCCHhhhhccCCeEEEec
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLLLI 186 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~~~A~~----~G~~~~d~t~~d~~Eav~~ADIVILav 186 (583)
++|+|||+|.||..++.++... .++ .+.++++..++..+.+.+ .|+.. ....+.+++++ +|+|++||
T Consensus 130 ~~vgiiG~G~qa~~h~~al~~~-----~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~-aDiVv~aT 201 (326)
T PRK06046 130 KVVGIIGAGNQARTQLLALSEV-----FDLEEVRVYDRTKSSAEKFVERMSSVVGCDV--TVAEDIEEACD-CDILVTTT 201 (326)
T ss_pred CEEEEECCcHHHHHHHHHHHhh-----CCceEEEEECCCHHHHHHHHHHHHhhcCceE--EEeCCHHHHhh-CCEEEEec
Confidence 7899999999999999999753 145 455555554433333332 24321 01457888887 99999999
Q ss_pred cchHHHHHHHHHHhcCCCCcEEEEecCc
Q 007951 187 SDAAQADNYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 187 pd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
|... .++. ...+++|+.|.-++..
T Consensus 202 ps~~--P~~~--~~~l~~g~hV~~iGs~ 225 (326)
T PRK06046 202 PSRK--PVVK--AEWIKEGTHINAIGAD 225 (326)
T ss_pred CCCC--cEec--HHHcCCCCEEEecCCC
Confidence 9753 3333 2356899987655544
No 181
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=97.03 E-value=0.0013 Score=69.42 Aligned_cols=89 Identities=18% Similarity=0.227 Sum_probs=63.2
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHHc----CceecCCCcCCHhhhhccCCeEEEec
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA----GFTEENGTLGDIYETISGSDLVLLLI 186 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~~~A~~~----G~~~~d~t~~d~~Eav~~ADIVILav 186 (583)
++++|||+|.||..++..|... .++ +|.++.|..++..+.+.+. |+.. ..+.+.++++.+||+|+.+|
T Consensus 130 ~~v~iiGaG~qA~~~~~al~~~-----~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v--~~~~~~~~av~~aDiVvtaT 202 (326)
T TIGR02992 130 SVVAIFGAGMQARLQLEALTLV-----RDIRSARIWARDSAKAEALALQLSSLLGIDV--TAATDPRAAMSGADIIVTTT 202 (326)
T ss_pred cEEEEECCCHHHHHHHHHHHHh-----CCccEEEEECCCHHHHHHHHHHHHhhcCceE--EEeCCHHHHhccCCEEEEec
Confidence 7899999999999999999753 154 6778888766655555433 5432 11457888999999999999
Q ss_pred cchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 187 SDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 187 pd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
|... .++. ...+++|+.|...
T Consensus 203 ~s~~--p~i~--~~~l~~g~~i~~v 223 (326)
T TIGR02992 203 PSET--PILH--AEWLEPGQHVTAM 223 (326)
T ss_pred CCCC--cEec--HHHcCCCcEEEee
Confidence 8643 2333 2347899877644
No 182
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=97.01 E-value=0.005 Score=64.45 Aligned_cols=92 Identities=17% Similarity=0.160 Sum_probs=64.1
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcc--cHHHHHHcCceecCCCcCCHhhhhc--cCCeEEEecc
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR--SFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLIS 187 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~--s~~~A~~~G~~~~d~t~~d~~Eav~--~ADIVILavp 187 (583)
.+|||||+|++|.-++..+.+. .++++....+.++. .++.|++.|+.. ...+.+++++ +-|+|++++|
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~-----~~~elvaV~d~d~es~~la~A~~~Gi~~---~~~~~e~ll~~~dIDaV~iaTp 73 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRS-----EHLEMVAMVGIDPESDGLARARELGVKT---SAEGVDGLLANPDIDIVFDATS 73 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhC-----CCcEEEEEEeCCcccHHHHHHHHCCCCE---EECCHHHHhcCCCCCEEEECCC
Confidence 4799999999999998888764 14555433333333 346788888753 1346777774 5788999999
Q ss_pred chHHHHHHHHHHhcCCCCcEEEEecCc
Q 007951 188 DAAQADNYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 188 d~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
+..+.++..... +.|+.|++-...
T Consensus 74 ~~~H~e~a~~al---~aGk~VIdekPa 97 (285)
T TIGR03215 74 AKAHARHARLLA---ELGKIVIDLTPA 97 (285)
T ss_pred cHHHHHHHHHHH---HcCCEEEECCcc
Confidence 999988776553 467777655443
No 183
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=97.00 E-value=0.0034 Score=67.02 Aligned_cols=95 Identities=19% Similarity=0.185 Sum_probs=63.1
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccH-HHHHHcCceec-----------CCC---cCCHhhhh
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF-AEARAAGFTEE-----------NGT---LGDIYETI 176 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~-~~A~~~G~~~~-----------d~t---~~d~~Eav 176 (583)
.||||+|+|.||..+++.+.+. .+++++...+...... ..+...|+... +.. ..+.+++.
T Consensus 2 ikVaI~G~GrIGr~va~al~~~-----~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~ 76 (341)
T PRK04207 2 IKVGVNGYGTIGKRVADAVAAQ-----PDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLL 76 (341)
T ss_pred eEEEEECCCHHHHHHHHHHhcC-----CCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhh
Confidence 6899999999999999988864 1567655555433222 22343443210 000 23566777
Q ss_pred ccCCeEEEeccchHHHHHHHHHHhcCCCCcEEEEecCc
Q 007951 177 SGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 177 ~~ADIVILavpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
.++|+|+.++|+....+..+.. ++.|+.+++.+|.
T Consensus 77 ~~vDVVIdaT~~~~~~e~a~~~---~~aGk~VI~~~~~ 111 (341)
T PRK04207 77 EKADIVVDATPGGVGAKNKELY---EKAGVKAIFQGGE 111 (341)
T ss_pred ccCCEEEECCCchhhHHHHHHH---HHCCCEEEEcCCC
Confidence 8899999999999887777643 4557778888774
No 184
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=96.99 E-value=0.0012 Score=72.29 Aligned_cols=74 Identities=12% Similarity=0.159 Sum_probs=57.9
Q ss_pred hhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHHcC-ceecCCCcCCHhhhhccCCeEEE
Q 007951 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAG-FTEENGTLGDIYETISGSDLVLL 184 (583)
Q Consensus 107 ~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~~~A~~~G-~~~~d~t~~d~~Eav~~ADIVIL 184 (583)
.++| ++|.|||.|-||.+++.+|.+. |. ++++.+|...+....+.+.| ... ....+..+.+.++|+||.
T Consensus 178 ~l~~-kkvlviGaG~~a~~va~~L~~~------g~~~I~V~nRt~~ra~~La~~~~~~~~--~~~~~l~~~l~~aDiVI~ 248 (414)
T PRK13940 178 NISS-KNVLIIGAGQTGELLFRHVTAL------APKQIMLANRTIEKAQKITSAFRNASA--HYLSELPQLIKKADIIIA 248 (414)
T ss_pred CccC-CEEEEEcCcHHHHHHHHHHHHc------CCCEEEEECCCHHHHHHHHHHhcCCeE--ecHHHHHHHhccCCEEEE
Confidence 3677 9999999999999999999987 86 68888988777777777765 221 012445678899999999
Q ss_pred eccch
Q 007951 185 LISDA 189 (583)
Q Consensus 185 avpd~ 189 (583)
||+-.
T Consensus 249 aT~a~ 253 (414)
T PRK13940 249 AVNVL 253 (414)
T ss_pred CcCCC
Confidence 99853
No 185
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=96.98 E-value=0.0025 Score=65.99 Aligned_cols=86 Identities=21% Similarity=0.221 Sum_probs=61.6
Q ss_pred CEEEEEccchhH-HHHHHHHHHhhhhhcCC--ceEE-EEecCCcccHHHHHHcCceecCCCcCCHhhhhcc--CCeEEEe
Q 007951 112 NQIGVIGWGSQG-PAQAQNLRDSLAEAKSD--IVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLL 185 (583)
Q Consensus 112 kkIgIIG~G~mG-~A~A~nLrdsl~~~g~G--~~Vi-Vg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~--ADIVILa 185 (583)
.+|||||+|.++ ..++..+++. + +.++ +.++..++..+.+.+.|+.. ...+.++++++ .|+|+++
T Consensus 4 irvgiiG~G~~~~~~~~~~~~~~------~~~~~~vav~d~~~~~a~~~a~~~~~~~---~~~~~~~ll~~~~iD~V~Ia 74 (342)
T COG0673 4 IRVGIIGAGGIAGKAHLPALAAL------GGGLELVAVVDRDPERAEAFAEEFGIAK---AYTDLEELLADPDIDAVYIA 74 (342)
T ss_pred eEEEEEcccHHHHHHhHHHHHhC------CCceEEEEEecCCHHHHHHHHHHcCCCc---ccCCHHHHhcCCCCCEEEEc
Confidence 689999999555 5688888876 4 2332 33455556667888888751 16789998875 5999999
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEE
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILG 209 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~ 209 (583)
+|+..+.++... .|+.|+-|.
T Consensus 75 tp~~~H~e~~~~---AL~aGkhVl 95 (342)
T COG0673 75 TPNALHAELALA---ALEAGKHVL 95 (342)
T ss_pred CCChhhHHHHHH---HHhcCCEEE
Confidence 999999887743 455676544
No 186
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=96.98 E-value=0.00076 Score=70.94 Aligned_cols=94 Identities=22% Similarity=0.296 Sum_probs=53.6
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHH---cCceecCCCcCCHhhhhccCCeEEEecc
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA---AGFTEENGTLGDIYETISGSDLVLLLIS 187 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~~~A~~---~G~~~~d~t~~d~~Eav~~ADIVILavp 187 (583)
++++|||+|.||..++..+..-+ ++ +|.|+.|..++..+.+.+ .|+.. ..+.+.++++++||+|+.+||
T Consensus 129 ~~l~viGaG~QA~~~~~a~~~~~-----~i~~v~v~~r~~~~~~~~~~~~~~~~~~v--~~~~~~~~av~~aDii~taT~ 201 (313)
T PF02423_consen 129 RTLGVIGAGVQARWHLRALAAVR-----PIKEVRVYSRSPERAEAFAARLRDLGVPV--VAVDSAEEAVRGADIIVTATP 201 (313)
T ss_dssp -EEEEE--SHHHHHHHHHHHHHS-------SEEEEE-SSHHHHHHHHHHHHCCCTCE--EEESSHHHHHTTSSEEEE---
T ss_pred ceEEEECCCHHHHHHHHHHHHhC-----CceEEEEEccChhHHHHHHHhhccccccc--eeccchhhhcccCCEEEEccC
Confidence 68999999999999999998751 44 677777765433333322 24332 125689999999999999999
Q ss_pred chHHHHHHHHHHhcCCCCcEEEEecCc
Q 007951 188 DAAQADNYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 188 d~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
-..-..+++ ...++||+.|.-+...
T Consensus 202 s~~~~P~~~--~~~l~~g~hi~~iGs~ 226 (313)
T PF02423_consen 202 STTPAPVFD--AEWLKPGTHINAIGSY 226 (313)
T ss_dssp -SSEEESB---GGGS-TT-EEEE-S-S
T ss_pred CCCCCcccc--HHHcCCCcEEEEecCC
Confidence 665212333 2467889877655544
No 187
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=96.97 E-value=0.048 Score=58.47 Aligned_cols=105 Identities=17% Similarity=0.262 Sum_probs=70.6
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhh-cCCceEEEEecC---CcccHHHHHH-----------cCceec-C-CCcCCHhh
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEA-KSDIVVKVGLRK---GSRSFAEARA-----------AGFTEE-N-GTLGDIYE 174 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~-g~G~~ViVg~r~---~s~s~~~A~~-----------~G~~~~-d-~t~~d~~E 174 (583)
.||+|||.|+=|.++|+.+..+-.+. -+..+|..+.+. +.+.....+- -|+... + -.+.|+.+
T Consensus 22 ~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~dl~e 101 (372)
T KOG2711|consen 22 LKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPDLVE 101 (372)
T ss_pred eEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecchHHH
Confidence 68999999999999999988762211 111234433322 1110111110 011100 0 01568899
Q ss_pred hhccCCeEEEeccchHHHHHHHHHHhcCCCCcE-EEEecCchh
Q 007951 175 TISGSDLVLLLISDAAQADNYEKIFSCMKPNSI-LGLSHGFLL 216 (583)
Q Consensus 175 av~~ADIVILavpd~a~~~Vl~eI~~~Lk~Gai-L~~a~G~~i 216 (583)
++++||+++..+|.+-+..++++|..++|++.. |+.+.||..
T Consensus 102 a~~dADilvf~vPhQf~~~ic~~l~g~vk~~~~aISL~KG~e~ 144 (372)
T KOG2711|consen 102 AAKDADILVFVVPHQFIPRICEQLKGYVKPGATAISLIKGVEV 144 (372)
T ss_pred HhccCCEEEEeCChhhHHHHHHHHhcccCCCCeEEEeecceec
Confidence 999999999999999999999999999999986 788888864
No 188
>PRK06823 ornithine cyclodeaminase; Validated
Probab=96.95 E-value=0.002 Score=68.11 Aligned_cols=95 Identities=19% Similarity=0.179 Sum_probs=65.6
Q ss_pred CCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHH---HHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEA---RAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 110 gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~~~A---~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
+-++++|||+|.||..+++.+..- ..+ +|.++.|..++..+.+ .+.|+.. ..+.+.++++++||||+.+
T Consensus 127 d~~~l~iiG~G~qA~~~~~a~~~v-----~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v--~~~~~~~~av~~ADIV~ta 199 (315)
T PRK06823 127 HVSAIGIVGTGIQARMQLMYLKNV-----TDCRQLWVWGRSETALEEYRQYAQALGFAV--NTTLDAAEVAHAANLIVTT 199 (315)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhc-----CCCCEEEEECCCHHHHHHHHHHHHhcCCcE--EEECCHHHHhcCCCEEEEe
Confidence 337899999999999999998764 133 7788887765544333 2235432 1146789999999999999
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEecCch
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~~ 215 (583)
|+-.. .+++ ...++||+.|.-++.+.
T Consensus 200 T~s~~--P~~~--~~~l~~G~hi~~iGs~~ 225 (315)
T PRK06823 200 TPSRE--PLLQ--AEDIQPGTHITAVGADS 225 (315)
T ss_pred cCCCC--ceeC--HHHcCCCcEEEecCCCC
Confidence 98543 3443 23578999877665443
No 189
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=96.94 E-value=0.0058 Score=64.53 Aligned_cols=92 Identities=16% Similarity=0.121 Sum_probs=66.3
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCc--ccHHHHHHcCceecCCCcCCHhhhhc-----cCCeEEE
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--RSFAEARAAGFTEENGTLGDIYETIS-----GSDLVLL 184 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s--~s~~~A~~~G~~~~d~t~~d~~Eav~-----~ADIVIL 184 (583)
.+|||||+|++|..++..+.++ .++++....+.+. +..+.|++.|+.. +..+.+++++ +.|+|+.
T Consensus 5 lrVAIIGtG~IGt~hm~~l~~~-----~~velvAVvdid~es~gla~A~~~Gi~~---~~~~ie~LL~~~~~~dIDiVf~ 76 (302)
T PRK08300 5 LKVAIIGSGNIGTDLMIKILRS-----EHLEPGAMVGIDPESDGLARARRLGVAT---SAEGIDGLLAMPEFDDIDIVFD 76 (302)
T ss_pred CeEEEEcCcHHHHHHHHHHhcC-----CCcEEEEEEeCChhhHHHHHHHHcCCCc---ccCCHHHHHhCcCCCCCCEEEE
Confidence 5899999999999988888864 1455544443333 3346688888763 1356777774 5899999
Q ss_pred eccchHHHHHHHHHHhcCCCCcEEEEecCc
Q 007951 185 LISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 185 avpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
++|...+.+...... +.|+.|++....
T Consensus 77 AT~a~~H~e~a~~a~---eaGk~VID~sPA 103 (302)
T PRK08300 77 ATSAGAHVRHAAKLR---EAGIRAIDLTPA 103 (302)
T ss_pred CCCHHHHHHHHHHHH---HcCCeEEECCcc
Confidence 999999988877654 468888777554
No 190
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=96.93 E-value=0.0047 Score=62.79 Aligned_cols=92 Identities=24% Similarity=0.302 Sum_probs=63.1
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEec-CCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccchH
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR-KGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r-~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~a 190 (583)
++|++||||.+|..+..-+++- -.+++.++.++ ..++....+...+... +.+++|.+++.|+|+=|-++++
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~----~~~~e~v~v~D~~~ek~~~~~~~~~~~~----~s~ide~~~~~DlvVEaAS~~A 72 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDG----RVDFELVAVYDRDEEKAKELEASVGRRC----VSDIDELIAEVDLVVEAASPEA 72 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcC----CcceeEEEEecCCHHHHHHHHhhcCCCc----cccHHHHhhccceeeeeCCHHH
Confidence 4799999999999999888863 01345444444 4333333333333332 5789999999999999999999
Q ss_pred HHHHHHHHHhcCCCCc-EEEEecCc
Q 007951 191 QADNYEKIFSCMKPNS-ILGLSHGF 214 (583)
Q Consensus 191 ~~~Vl~eI~~~Lk~Ga-iL~~a~G~ 214 (583)
..+...++. +.|. +|+.+-|-
T Consensus 73 v~e~~~~~L---~~g~d~iV~SVGA 94 (255)
T COG1712 73 VREYVPKIL---KAGIDVIVMSVGA 94 (255)
T ss_pred HHHHhHHHH---hcCCCEEEEechh
Confidence 988888764 4444 55666553
No 191
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=96.92 E-value=0.0023 Score=61.97 Aligned_cols=76 Identities=18% Similarity=0.258 Sum_probs=57.1
Q ss_pred hhhcCCCEEEEEccchh-HHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 007951 106 DAFNGINQIGVIGWGSQ-GPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (583)
Q Consensus 106 ~~l~gikkIgIIG~G~m-G~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVIL 184 (583)
..|+| ++|.|||.|-| |..+++.|... |.+|.+..|.. .+..+.+++||+||.
T Consensus 40 ~~l~g-k~vlViG~G~~~G~~~a~~L~~~------g~~V~v~~r~~-------------------~~l~~~l~~aDiVIs 93 (168)
T cd01080 40 IDLAG-KKVVVVGRSNIVGKPLAALLLNR------NATVTVCHSKT-------------------KNLKEHTKQADIVIV 93 (168)
T ss_pred CCCCC-CEEEEECCcHHHHHHHHHHHhhC------CCEEEEEECCc-------------------hhHHHHHhhCCEEEE
Confidence 45788 99999999997 88799999988 88877776541 245678899999999
Q ss_pred eccchHHHHHHHHHHhcCCCCcEEEEec
Q 007951 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (583)
Q Consensus 185 avpd~a~~~Vl~eI~~~Lk~GaiL~~a~ 212 (583)
+++-.. ++.. ..++++.+|+|.+
T Consensus 94 at~~~~---ii~~--~~~~~~~viIDla 116 (168)
T cd01080 94 AVGKPG---LVKG--DMVKPGAVVIDVG 116 (168)
T ss_pred cCCCCc---eecH--HHccCCeEEEEcc
Confidence 999653 2331 1357777777663
No 192
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=96.91 E-value=0.0013 Score=67.29 Aligned_cols=93 Identities=19% Similarity=0.103 Sum_probs=60.3
Q ss_pred hcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHc---CceecCCCcCCHhh-hhccCCeEE
Q 007951 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA---GFTEENGTLGDIYE-TISGSDLVL 183 (583)
Q Consensus 108 l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~---G~~~~d~t~~d~~E-av~~ADIVI 183 (583)
.++ +++.|+|.|.+|.+++..|.+. |.+|.+.+|..++..+.+.+. |... ..+..+ ...++|+||
T Consensus 115 ~~~-k~vliiGaGg~g~aia~~L~~~------g~~v~v~~R~~~~~~~la~~~~~~~~~~----~~~~~~~~~~~~DivI 183 (270)
T TIGR00507 115 RPN-QRVLIIGAGGAARAVALPLLKA------DCNVIIANRTVSKAEELAERFQRYGEIQ----AFSMDELPLHRVDLII 183 (270)
T ss_pred ccC-CEEEEEcCcHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHhhcCceE----EechhhhcccCccEEE
Confidence 456 8999999999999999999988 888888887655544444432 2211 122222 345799999
Q ss_pred EeccchHHHHHHH-H-HHhcCCCCcEEEEe
Q 007951 184 LLISDAAQADNYE-K-IFSCMKPNSILGLS 211 (583)
Q Consensus 184 Lavpd~a~~~Vl~-e-I~~~Lk~GaiL~~a 211 (583)
.++|......+-+ . -...++++.+++|+
T Consensus 184 natp~gm~~~~~~~~~~~~~l~~~~~v~D~ 213 (270)
T TIGR00507 184 NATSAGMSGNIDEPPVPAEKLKEGMVVYDM 213 (270)
T ss_pred ECCCCCCCCCCCCCCCCHHHcCCCCEEEEe
Confidence 9999754322100 0 12346677777665
No 193
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=96.84 E-value=0.0021 Score=70.42 Aligned_cols=71 Identities=23% Similarity=0.339 Sum_probs=61.1
Q ss_pred hcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEec
Q 007951 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (583)
Q Consensus 108 l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILav 186 (583)
|++ +++.|||+|-||.-.|+.|... |+ +|+|.+|.-++..+.|.+.|... -+..+..+.+.++|+||.+|
T Consensus 176 L~~-~~vlvIGAGem~~lva~~L~~~------g~~~i~IaNRT~erA~~La~~~~~~~--~~l~el~~~l~~~DvVissT 246 (414)
T COG0373 176 LKD-KKVLVIGAGEMGELVAKHLAEK------GVKKITIANRTLERAEELAKKLGAEA--VALEELLEALAEADVVISST 246 (414)
T ss_pred ccc-CeEEEEcccHHHHHHHHHHHhC------CCCEEEEEcCCHHHHHHHHHHhCCee--ecHHHHHHhhhhCCEEEEec
Confidence 777 9999999999999999999998 85 88899999888899999999542 12456678899999999997
Q ss_pred c
Q 007951 187 S 187 (583)
Q Consensus 187 p 187 (583)
.
T Consensus 247 s 247 (414)
T COG0373 247 S 247 (414)
T ss_pred C
Confidence 6
No 194
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=96.79 E-value=0.0072 Score=54.85 Aligned_cols=86 Identities=16% Similarity=0.128 Sum_probs=56.5
Q ss_pred CEEEEEc----cchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEecc
Q 007951 112 NQIGVIG----WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (583)
Q Consensus 112 kkIgIIG----~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavp 187 (583)
|+|+||| -+..|.-+..+|++. |++|+--+.+... -.|... ..++.|.-...|++++++|
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~------G~~v~~Vnp~~~~------i~G~~~----y~sl~e~p~~iDlavv~~~ 64 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAA------GYEVYPVNPKGGE------ILGIKC----YPSLAEIPEPIDLAVVCVP 64 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHT------T-EEEEESTTCSE------ETTEE-----BSSGGGCSST-SEEEE-S-
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhC------CCEEEEECCCceE------ECcEEe----eccccCCCCCCCEEEEEcC
Confidence 6899999 788899999999998 9887544433211 135553 5677774478999999999
Q ss_pred chHHHHHHHHHHhcCCCCcEEEEecCc
Q 007951 188 DAAQADNYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 188 d~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
++...++++++... ..+.+|...+..
T Consensus 65 ~~~~~~~v~~~~~~-g~~~v~~~~g~~ 90 (116)
T PF13380_consen 65 PDKVPEIVDEAAAL-GVKAVWLQPGAE 90 (116)
T ss_dssp HHHHHHHHHHHHHH-T-SEEEE-TTS-
T ss_pred HHHHHHHHHHHHHc-CCCEEEEEcchH
Confidence 99999999987653 344455555543
No 195
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=96.77 E-value=0.007 Score=63.26 Aligned_cols=67 Identities=19% Similarity=0.204 Sum_probs=46.2
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc--eEEEEecCCcccHHHHHHc-------Cc--eecCCCcCCHhhhhccCC
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA-------GF--TEENGTLGDIYETISGSD 180 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~--~ViVg~r~~s~s~~~A~~~-------G~--~~~d~t~~d~~Eav~~AD 180 (583)
+||+|||.|.+|.++|..|... |+ ++++.++..++....+.+. +. .. ...+. +.+++||
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~------g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i---~~~~~-~~l~~aD 70 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQ------GIADELVLIDINEEKAEGEALDLEDALAFLPSPVKI---KAGDY-SDCKDAD 70 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEE---EcCCH-HHhCCCC
Confidence 5899999999999999999887 74 6777776554433333321 11 11 12333 4578999
Q ss_pred eEEEeccc
Q 007951 181 LVLLLISD 188 (583)
Q Consensus 181 IVILavpd 188 (583)
+||+++..
T Consensus 71 IVIitag~ 78 (306)
T cd05291 71 IVVITAGA 78 (306)
T ss_pred EEEEccCC
Confidence 99998875
No 196
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=96.77 E-value=0.002 Score=66.36 Aligned_cols=77 Identities=21% Similarity=0.224 Sum_probs=55.0
Q ss_pred hhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCC-ceEEEEecCCcccHHHHHHcCceecCCCc-CCHhhhhccCCeEEE
Q 007951 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTL-GDIYETISGSDLVLL 184 (583)
Q Consensus 107 ~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G-~~ViVg~r~~s~s~~~A~~~G~~~~d~t~-~d~~Eav~~ADIVIL 184 (583)
.+++ +++.|||.|-+|.+++..|.+. | .+|++.+|..++..+.+.+.+-.. .-.. .+..+.+.++|+||.
T Consensus 120 ~~~~-k~vlVlGaGg~a~ai~~aL~~~------g~~~V~v~~R~~~~a~~l~~~~~~~~-~~~~~~~~~~~~~~~DivIn 191 (278)
T PRK00258 120 DLKG-KRILILGAGGAARAVILPLLDL------GVAEITIVNRTVERAEELAKLFGALG-KAELDLELQEELADFDLIIN 191 (278)
T ss_pred CCCC-CEEEEEcCcHHHHHHHHHHHHc------CCCEEEEEeCCHHHHHHHHHHhhhcc-ceeecccchhccccCCEEEE
Confidence 4677 8999999999999999999987 8 488888887655555554433110 0001 133467789999999
Q ss_pred eccchHH
Q 007951 185 LISDAAQ 191 (583)
Q Consensus 185 avpd~a~ 191 (583)
+||....
T Consensus 192 aTp~g~~ 198 (278)
T PRK00258 192 ATSAGMS 198 (278)
T ss_pred CCcCCCC
Confidence 9997654
No 197
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=96.74 E-value=0.037 Score=56.13 Aligned_cols=86 Identities=15% Similarity=0.186 Sum_probs=61.0
Q ss_pred hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecC--C--------CcCCHhhhhccCCeEEEeccchH
Q 007951 121 SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN--G--------TLGDIYETISGSDLVLLLISDAA 190 (583)
Q Consensus 121 ~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d--~--------t~~d~~Eav~~ADIVILavpd~a 190 (583)
.||..+|..|.++ |++|.+..|. +..+.-++.|+...+ + ...+.++ ....|+||+++|-.+
T Consensus 1 aiG~~~a~~L~~~------G~~V~l~~r~--~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~-~~~~D~iiv~vKs~~ 71 (293)
T TIGR00745 1 AVGSLYGAYLARA------GHDVTLLARG--EQLEALNQEGLRIVSLGGEFQFRPVSAATSPEE-LPPADLVIITVKAYQ 71 (293)
T ss_pred CchHHHHHHHHhC------CCcEEEEecH--HHHHHHHHCCcEEEecCCcEEEcccccccChhh-cCCCCEEEEeccchh
Confidence 3788999999988 8888877764 334444556754211 1 0112333 568999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEE-EecCch
Q 007951 191 QADNYEKIFSCMKPNSILG-LSHGFL 215 (583)
Q Consensus 191 ~~~Vl~eI~~~Lk~GaiL~-~a~G~~ 215 (583)
..++++.+.+++.++++|+ +.-|+.
T Consensus 72 ~~~~l~~l~~~l~~~~~iv~~qNG~g 97 (293)
T TIGR00745 72 TEEAAALLLPLIGKNTKVLFLQNGLG 97 (293)
T ss_pred HHHHHHHhHhhcCCCCEEEEccCCCC
Confidence 9999999999999887654 556764
No 198
>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=96.73 E-value=0.036 Score=56.78 Aligned_cols=205 Identities=14% Similarity=0.167 Sum_probs=121.0
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCc----------ccHHHHHHcCceec----------CCCcCC
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----------RSFAEARAAGFTEE----------NGTLGD 171 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s----------~s~~~A~~~G~~~~----------d~t~~d 171 (583)
.||+|+|-|..|+++|.-+..+ |++|..++-..+ +...+.++.|.-.. -+++.+
T Consensus 4 ~ki~ivgSgl~g~~WAmlFAs~------GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~ 77 (313)
T KOG2305|consen 4 GKIAIVGSGLVGSSWAMLFASS------GYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTS 77 (313)
T ss_pred cceeEeecccccchHHHHHhcc------CceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCcc
Confidence 6899999999999999999888 999877654322 12223333443211 123578
Q ss_pred HhhhhccCCeEEEeccchHH--HHHHHHHHhcCCCCcEEEEecC-chhhhhhcccccCCCCccEEEeccCCCchhhHHhH
Q 007951 172 IYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILGLSHG-FLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLY 248 (583)
Q Consensus 172 ~~Eav~~ADIVILavpd~a~--~~Vl~eI~~~Lk~GaiL~~a~G-~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf 248 (583)
+.|++++|=.|-=|+|..-. ..+|.++-..+.|..||.-+.. |-...+-. ++ -..-..+-+||--|.--+
T Consensus 78 l~E~vk~Ai~iQEcvpE~L~lkk~ly~qlD~i~d~~tIlaSSTSt~mpS~~s~-gL--~~k~q~lvaHPvNPPyfi---- 150 (313)
T KOG2305|consen 78 LNELVKGAIHIQECVPEDLNLKKQLYKQLDEIADPTTILASSTSTFMPSKFSA-GL--INKEQCLVAHPVNPPYFI---- 150 (313)
T ss_pred HHHHHhhhhhHHhhchHhhHHHHHHHHHHHHhcCCceEEeccccccChHHHhh-hh--hhhhheeEecCCCCCccc----
Confidence 89999999888889996654 3466666666667766654432 22111111 11 134567889995544321
Q ss_pred hccccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhh-hhhhhhhhHhhHHHHHHH------HHH
Q 007951 249 VQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRS-DIFGERGILLGAVHGIVE------SLF 321 (583)
Q Consensus 249 ~~G~e~~G~Gv~aliAv~qd~sgeale~a~ala~aIG~~~vieTtf~eE~~s-DlfgeqtvLsG~~pAlie------Al~ 321 (583)
. ..- +.|++-.+++..+...++...+|-..+ +.+.|..- -+=-.|-++|+=.-.++. .=.
T Consensus 151 -P--------LvE-lVPaPwTsp~tVdrt~~lM~sigq~pV---~l~rei~Gf~lnriq~Ailne~wrLvasGil~v~dv 217 (313)
T KOG2305|consen 151 -P--------LVE-LVPAPWTSPDTVDRTRALMRSIGQEPV---TLKREILGFALNRIQYAILNETWRLVASGILNVNDV 217 (313)
T ss_pred -c--------hhe-eccCCCCChhHHHHHHHHHHHhCCCCc---ccccccccceeccccHHHHHHHHHHHHccCcchhhH
Confidence 1 111 566777889999999999999995311 11222000 000111122221111222 234
Q ss_pred HHHHHcCCCHHHHHHHHHHHH
Q 007951 322 RRFTENGMNEDLAYKNTVECI 342 (583)
Q Consensus 322 d~~Ve~Gl~~e~A~~~~~q~l 342 (583)
|.-..+|+-|-+|+.-.++|+
T Consensus 218 D~VmS~GLG~RYAflG~lET~ 238 (313)
T KOG2305|consen 218 DAVMSAGLGPRYAFLGPLETA 238 (313)
T ss_pred HHHHhcCCCcchhcccchhhh
Confidence 666788999999988777764
No 199
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=96.73 E-value=0.0071 Score=60.99 Aligned_cols=93 Identities=20% Similarity=0.200 Sum_probs=63.2
Q ss_pred hhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc---eEEEEecCC----ccc-------HHHHHHcCceecCCCcCCH
Q 007951 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI---VVKVGLRKG----SRS-------FAEARAAGFTEENGTLGDI 172 (583)
Q Consensus 107 ~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~---~ViVg~r~~----s~s-------~~~A~~~G~~~~d~t~~d~ 172 (583)
.+++ ++|.|+|.|.+|.+++..|.+. |. ++++.+|++ ++. .+.++..+... ...+.
T Consensus 22 ~l~~-~rvlvlGAGgAg~aiA~~L~~~------G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~---~~~~l 91 (226)
T cd05311 22 KIEE-VKIVINGAGAAGIAIARLLLAA------GAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEK---TGGTL 91 (226)
T ss_pred CccC-CEEEEECchHHHHHHHHHHHHc------CcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCc---ccCCH
Confidence 4778 8999999999999999999987 76 477777762 221 23344432211 01356
Q ss_pred hhhhccCCeEEEeccchHHHHHHHHHHhcCCCCcEEEEec
Q 007951 173 YETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (583)
Q Consensus 173 ~Eav~~ADIVILavpd~a~~~Vl~eI~~~Lk~GaiL~~a~ 212 (583)
.++++++|+||-++|+.... +++...|.++.+|.+..
T Consensus 92 ~~~l~~~dvlIgaT~~G~~~---~~~l~~m~~~~ivf~ls 128 (226)
T cd05311 92 KEALKGADVFIGVSRPGVVK---KEMIKKMAKDPIVFALA 128 (226)
T ss_pred HHHHhcCCEEEeCCCCCCCC---HHHHHhhCCCCEEEEeC
Confidence 68889999999999865543 23444455777766443
No 200
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=96.71 E-value=0.0021 Score=68.93 Aligned_cols=93 Identities=19% Similarity=0.216 Sum_probs=69.8
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHH-HHH-cCceecCCCcCCHhhhh---ccCCeEEEec
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-ARA-AGFTEENGTLGDIYETI---SGSDLVLLLI 186 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~-A~~-~G~~~~d~t~~d~~Eav---~~ADIVILav 186 (583)
..||.||++.||.++++|+.+. |+.|.+++|..++.-+. +.+ .|...-+ ..+++|.+ ++--.|+|++
T Consensus 7 ~digLiGLaVMGqnLiLN~~d~------Gf~v~~yNRT~skvD~flaneak~~~i~g--a~S~ed~v~klk~PR~iillv 78 (487)
T KOG2653|consen 7 ADIGLIGLAVMGQNLILNIADK------GFTVCAYNRTTSKVDEFLANEAKGTKIIG--AYSLEDFVSKLKKPRVIILLV 78 (487)
T ss_pred cchhhhhHhhhhhhhhhccccc------CceEEEeccchHhHHHHHHHhhcCCcccC--CCCHHHHHHhcCCCcEEEEEe
Confidence 4699999999999999999999 99999999986654322 111 1221101 35677754 5678999999
Q ss_pred cchHHHH-HHHHHHhcCCCCcEEEEec
Q 007951 187 SDAAQAD-NYEKIFSCMKPNSILGLSH 212 (583)
Q Consensus 187 pd~a~~~-Vl~eI~~~Lk~GaiL~~a~ 212 (583)
+-...++ +++++.|+|.+|.+|+|-.
T Consensus 79 kAG~pVD~~I~~L~p~LekgDiIIDGG 105 (487)
T KOG2653|consen 79 KAGAPVDQFIEELVPYLEKGDIIIDGG 105 (487)
T ss_pred eCCCcHHHHHHHHHhhcCCCCEEEeCC
Confidence 9777665 6678999999999988764
No 201
>PRK06199 ornithine cyclodeaminase; Validated
Probab=96.68 E-value=0.0033 Score=68.12 Aligned_cols=90 Identities=20% Similarity=0.188 Sum_probs=61.4
Q ss_pred CCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHHc-----Cc---eecCCCcCCHhhhhccCC
Q 007951 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA-----GF---TEENGTLGDIYETISGSD 180 (583)
Q Consensus 110 gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~~~A~~~-----G~---~~~d~t~~d~~Eav~~AD 180 (583)
+-++++|||+|.||..++..+..-. ..+ +|.|+.|..++..+.+.+. |+ .. +.+.++++++||
T Consensus 154 da~~l~iiG~G~QA~~~l~a~~~v~----~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~----~~s~~eav~~AD 225 (379)
T PRK06199 154 DSKVVGLLGPGVMGKTILAAFMAVC----PGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEV----VDSIEEVVRGSD 225 (379)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhc----CCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEE----eCCHHHHHcCCC
Confidence 4478999999999999999887631 024 6778887765544433322 32 22 578999999999
Q ss_pred eEEEeccchH----HHHHHHHHHhcCCCCcEEE
Q 007951 181 LVLLLISDAA----QADNYEKIFSCMKPNSILG 209 (583)
Q Consensus 181 IVILavpd~a----~~~Vl~eI~~~Lk~GaiL~ 209 (583)
||+.+|+... ...+++ ...+|||+.|.
T Consensus 226 IVvtaT~s~~~~~s~~Pv~~--~~~lkpG~hv~ 256 (379)
T PRK06199 226 IVTYCNSGETGDPSTYPYVK--REWVKPGAFLL 256 (379)
T ss_pred EEEEccCCCCCCCCcCcEec--HHHcCCCcEEe
Confidence 9999997422 123443 23578998765
No 202
>PTZ00117 malate dehydrogenase; Provisional
Probab=96.68 E-value=0.0091 Score=63.08 Aligned_cols=69 Identities=19% Similarity=0.136 Sum_probs=44.2
Q ss_pred hcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHH--c-----Cc--eecCCCcCCHhhhhc
Q 007951 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA--A-----GF--TEENGTLGDIYETIS 177 (583)
Q Consensus 108 l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~~~A~~--~-----G~--~~~d~t~~d~~Eav~ 177 (583)
.+. +||+|||.|++|.+++..+... |+ ++++.+.+.+.....+.. + +. .. ....+.+ +++
T Consensus 3 ~~~-~KI~IIGaG~vG~~ia~~l~~~------~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i--~~~~d~~-~l~ 72 (319)
T PTZ00117 3 VKR-KKISMIGAGQIGSTVALLILQK------NLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINI--LGTNNYE-DIK 72 (319)
T ss_pred CCC-cEEEEECCCHHHHHHHHHHHHC------CCCeEEEEECCCccchhHHHHHhhhccccCCCeEE--EeCCCHH-HhC
Confidence 455 8999999999999999998877 63 655555443322222211 1 11 11 0023444 789
Q ss_pred cCCeEEEec
Q 007951 178 GSDLVLLLI 186 (583)
Q Consensus 178 ~ADIVILav 186 (583)
+||+||++.
T Consensus 73 ~ADiVVita 81 (319)
T PTZ00117 73 DSDVVVITA 81 (319)
T ss_pred CCCEEEECC
Confidence 999999998
No 203
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=96.64 E-value=0.0089 Score=63.76 Aligned_cols=95 Identities=14% Similarity=0.168 Sum_probs=58.9
Q ss_pred CEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcC-ceec-CCCcCCHh-hhhccCCeEEEecc
Q 007951 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEE-NGTLGDIY-ETISGSDLVLLLIS 187 (583)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G-~~~~-d~t~~d~~-Eav~~ADIVILavp 187 (583)
+||+|||. |.+|..+++.|.+. .+++++...++.+.....+...+ +... +..+.+.+ +..+++|+|++|+|
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~~~-----p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~alP 77 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLLNH-----PEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLALP 77 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHHcC-----CCceEEEEECccccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECCC
Confidence 79999997 99999999998864 14565443443222112222222 1100 00122222 24578999999999
Q ss_pred chHHHHHHHHHHhcCCCCcEEEEecCc
Q 007951 188 DAAQADNYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 188 d~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
+..+.++..++.. .|..|+|.++-
T Consensus 78 ~~~~~~~v~~a~~---aG~~VID~S~~ 101 (343)
T PRK00436 78 HGVSMDLAPQLLE---AGVKVIDLSAD 101 (343)
T ss_pred cHHHHHHHHHHHh---CCCEEEECCcc
Confidence 9999888887643 58888877663
No 204
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=96.62 E-value=0.0045 Score=66.59 Aligned_cols=93 Identities=24% Similarity=0.248 Sum_probs=73.9
Q ss_pred hhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEec
Q 007951 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (583)
Q Consensus 107 ~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILav 186 (583)
.+.| |++.|.|||-.|...|+.+|.. |.+|+|..-+. -..-+|.-+||. +...+|+++.+|++|-+|
T Consensus 206 liaG-K~vVV~GYG~vGrG~A~~~rg~------GA~ViVtEvDP-I~AleA~MdGf~-----V~~m~~Aa~~gDifiT~T 272 (420)
T COG0499 206 LLAG-KNVVVAGYGWVGRGIAMRLRGM------GARVIVTEVDP-IRALEAAMDGFR-----VMTMEEAAKTGDIFVTAT 272 (420)
T ss_pred eecC-ceEEEecccccchHHHHHhhcC------CCeEEEEecCc-hHHHHHhhcCcE-----EEEhHHhhhcCCEEEEcc
Confidence 3456 8999999999999999999977 88988875443 334566678998 578999999999999999
Q ss_pred cchHHHHHHH-HHHhcCCCCcEEEEecCch
Q 007951 187 SDAAQADNYE-KIFSCMKPNSILGLSHGFL 215 (583)
Q Consensus 187 pd~a~~~Vl~-eI~~~Lk~GaiL~~a~G~~ 215 (583)
-... |+. +....||+|++|.-+.-|.
T Consensus 273 Gnkd---Vi~~eh~~~MkDgaIl~N~GHFd 299 (420)
T COG0499 273 GNKD---VIRKEHFEKMKDGAILANAGHFD 299 (420)
T ss_pred CCcC---ccCHHHHHhccCCeEEecccccc
Confidence 8754 443 5666799999988776575
No 205
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.54 E-value=0.006 Score=63.95 Aligned_cols=75 Identities=15% Similarity=0.223 Sum_probs=58.9
Q ss_pred hhcCCCEEEEEccch-hHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 107 AFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 107 ~l~gikkIgIIG~G~-mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
.|+| ++|.|||.|. +|..+|.-|... |..|++..++. .+..+.+++||+||.+
T Consensus 155 ~l~G-k~vvVIGrs~~VG~pla~lL~~~------gatVtv~~s~t-------------------~~l~~~~~~ADIVIsA 208 (286)
T PRK14175 155 DLEG-KNAVVIGRSHIVGQPVSKLLLQK------NASVTILHSRS-------------------KDMASYLKDADVIVSA 208 (286)
T ss_pred CCCC-CEEEEECCCchhHHHHHHHHHHC------CCeEEEEeCCc-------------------hhHHHHHhhCCEEEEC
Confidence 5889 9999999988 999999999987 88887775421 2456789999999999
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEec
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a~ 212 (583)
++-... +.. ..+++|++|+|++
T Consensus 209 vg~p~~---i~~--~~vk~gavVIDvG 230 (286)
T PRK14175 209 VGKPGL---VTK--DVVKEGAVIIDVG 230 (286)
T ss_pred CCCCcc---cCH--HHcCCCcEEEEcC
Confidence 986432 322 3578999888874
No 206
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.53 E-value=0.012 Score=61.82 Aligned_cols=70 Identities=19% Similarity=0.193 Sum_probs=44.1
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc--eEEEEecCCcccHHHHHH--cCceec---CCCcCCHhhhhccCCeEEE
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA--AGFTEE---NGTLGDIYETISGSDLVLL 184 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~--~ViVg~r~~s~s~~~A~~--~G~~~~---d~t~~d~~Eav~~ADIVIL 184 (583)
|||+|||.|.+|.++|..|... |+ ++++.++..++....+.. ...... .-...+. +.+++||+||+
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~------g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~-~~l~~aDiVii 73 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLR------GLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDY-ADCKGADVVVI 73 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHc------CCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCH-HHhCCCCEEEE
Confidence 5899999999999999999987 74 566655543322212221 111000 0001343 56899999999
Q ss_pred eccc
Q 007951 185 LISD 188 (583)
Q Consensus 185 avpd 188 (583)
+.+.
T Consensus 74 ta~~ 77 (308)
T cd05292 74 TAGA 77 (308)
T ss_pred ccCC
Confidence 9874
No 207
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=96.52 E-value=0.013 Score=62.10 Aligned_cols=66 Identities=23% Similarity=0.220 Sum_probs=42.1
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcc----cHHHHHH---cC--ceecCCCcCCHhhhhccCCe
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSR----SFAEARA---AG--FTEENGTLGDIYETISGSDL 181 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~----s~~~A~~---~G--~~~~d~t~~d~~Eav~~ADI 181 (583)
+||+|||.|+||.++|..+... |+ ++++.+...+. ..+.... .+ .... ...+. +++++||+
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~------gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~--~~~d~-~~l~~aDi 77 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLK------NLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVI--GTNNY-EDIAGSDV 77 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEE--ECCCH-HHhCCCCE
Confidence 7999999999999999998877 75 65554443332 1222211 11 1110 12455 67899999
Q ss_pred EEEec
Q 007951 182 VLLLI 186 (583)
Q Consensus 182 VILav 186 (583)
||++.
T Consensus 78 VI~ta 82 (321)
T PTZ00082 78 VIVTA 82 (321)
T ss_pred EEECC
Confidence 99965
No 208
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=96.50 E-value=0.01 Score=64.71 Aligned_cols=90 Identities=17% Similarity=0.168 Sum_probs=61.5
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceec--------------CC---CcCCHhh
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--------------NG---TLGDIYE 174 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~--------------d~---t~~d~~E 174 (583)
|||+|||.|-.|...+..|.+. |++|+ +.+.++...+. ...|..+= .+ .+.|.++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~------GHeVv-~vDid~~KV~~-ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~ 72 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAEL------GHEVV-CVDIDESKVEL-LNKGISPIYEPGLEELLKENLASGRLRFTTDYEE 72 (414)
T ss_pred CceEEECCchHHHHHHHHHHHc------CCeEE-EEeCCHHHHHH-HhCCCCCCcCccHHHHHHhccccCcEEEEcCHHH
Confidence 7899999999999999999988 98875 45544322222 22222100 00 1467889
Q ss_pred hhccCCeEEEeccch----------HHHHHHHHHHhcCCCCcEEE
Q 007951 175 TISGSDLVLLLISDA----------AQADNYEKIFSCMKPNSILG 209 (583)
Q Consensus 175 av~~ADIVILavpd~----------a~~~Vl~eI~~~Lk~GaiL~ 209 (583)
+++++|++|+|||.. ....+.++|.++++..++|+
T Consensus 73 a~~~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV 117 (414)
T COG1004 73 AVKDADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVV 117 (414)
T ss_pred HHhcCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEE
Confidence 999999999998732 12346678999997766654
No 209
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=96.49 E-value=0.0057 Score=53.39 Aligned_cols=89 Identities=13% Similarity=0.195 Sum_probs=55.7
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhcc--CCeEEEeccch
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLISDA 189 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~--ADIVILavpd~ 189 (583)
.++.|+|.|..|.+++..+.+. . |+.+....+.+++..-. .-.|+.. ..++.++.+. .|+-+|++|+.
T Consensus 4 ~~v~ivGag~~G~a~~~~~~~~---~--g~~i~~~~dv~~~~~G~-~i~gipV----~~~~~~l~~~~~i~iaii~VP~~ 73 (96)
T PF02629_consen 4 TNVIIVGAGNLGRALLYNGFSM---R--GFGIVAVFDVDPEKIGK-EIGGIPV----YGSMDELEEFIEIDIAIITVPAE 73 (96)
T ss_dssp EEEEEETTTSHHHHHHHHHHHH---H--CECEEEEEEECTTTTTS-EETTEEE----ESSHHHHHHHCTTSEEEEES-HH
T ss_pred CeEEEECCCCcHHHHHHhHHHH---c--CCCCEEEEEcCCCccCc-EECCEEe----eccHHHhhhhhCCCEEEEEcCHH
Confidence 5899999999999999777665 2 44433333332221111 1125553 3377777666 99999999999
Q ss_pred HHHHHHHHHHh-cCCCCcEEEEec
Q 007951 190 AQADNYEKIFS-CMKPNSILGLSH 212 (583)
Q Consensus 190 a~~~Vl~eI~~-~Lk~GaiL~~a~ 212 (583)
...++..++.. .+|. ++.++.
T Consensus 74 ~a~~~~~~~~~~gIk~--i~nft~ 95 (96)
T PF02629_consen 74 AAQEVADELVEAGIKG--IVNFTP 95 (96)
T ss_dssp HHHHHHHHHHHTT-SE--EEEESS
T ss_pred HHHHHHHHHHHcCCCE--EEEeCC
Confidence 88888887543 3322 555554
No 210
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=96.49 E-value=0.006 Score=67.93 Aligned_cols=74 Identities=15% Similarity=0.165 Sum_probs=52.0
Q ss_pred hhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEec
Q 007951 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (583)
Q Consensus 107 ~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILav 186 (583)
.+++ ++++|||.|.+|.+++..|.+. |.++++.+|...+..+.+...+... ....+.. .+.++|+||+|+
T Consensus 329 ~~~~-k~vlIiGaGgiG~aia~~L~~~------G~~V~i~~R~~~~~~~la~~~~~~~--~~~~~~~-~l~~~DiVInat 398 (477)
T PRK09310 329 PLNN-QHVAIVGAGGAAKAIATTLARA------GAELLIFNRTKAHAEALASRCQGKA--FPLESLP-ELHRIDIIINCL 398 (477)
T ss_pred CcCC-CEEEEEcCcHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHhccce--echhHhc-ccCCCCEEEEcC
Confidence 3567 8999999999999999999988 8888887776544444444433221 0011222 257899999999
Q ss_pred cchH
Q 007951 187 SDAA 190 (583)
Q Consensus 187 pd~a 190 (583)
|+..
T Consensus 399 P~g~ 402 (477)
T PRK09310 399 PPSV 402 (477)
T ss_pred CCCC
Confidence 9875
No 211
>PRK08291 ectoine utilization protein EutC; Validated
Probab=96.48 E-value=0.0062 Score=64.46 Aligned_cols=88 Identities=22% Similarity=0.273 Sum_probs=61.0
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHHc----CceecCCCcCCHhhhhccCCeEEEec
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA----GFTEENGTLGDIYETISGSDLVLLLI 186 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~~~A~~~----G~~~~d~t~~d~~Eav~~ADIVILav 186 (583)
++|+|||.|.||.+++..+... .++ +|.++.|..++..+.+.+. |+.. ....+.++++.++|+|+.+|
T Consensus 133 ~~v~IiGaG~~a~~~~~al~~~-----~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v--~~~~d~~~al~~aDiVi~aT 205 (330)
T PRK08291 133 SRAAVIGAGEQARLQLEALTLV-----RPIREVRVWARDAAKAEAYAADLRAELGIPV--TVARDVHEAVAGADIIVTTT 205 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhc-----CCCCEEEEEcCCHHHHHHHHHHHhhccCceE--EEeCCHHHHHccCCEEEEee
Confidence 7899999999999999999863 144 6777777755555555432 4431 11467889999999999999
Q ss_pred cchHHHHHHHHHHhcCCCCcEEEE
Q 007951 187 SDAAQADNYEKIFSCMKPNSILGL 210 (583)
Q Consensus 187 pd~a~~~Vl~eI~~~Lk~GaiL~~ 210 (583)
|-.. .+++. ..+++|+.|..
T Consensus 206 ~s~~--p~i~~--~~l~~g~~v~~ 225 (330)
T PRK08291 206 PSEE--PILKA--EWLHPGLHVTA 225 (330)
T ss_pred CCCC--cEecH--HHcCCCceEEe
Confidence 8642 33432 23678876654
No 212
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=96.46 E-value=0.0065 Score=63.18 Aligned_cols=74 Identities=15% Similarity=0.104 Sum_probs=54.0
Q ss_pred hcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHHcCc-----eecCCCcCCHhhhhccCCe
Q 007951 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGF-----TEENGTLGDIYETISGSDL 181 (583)
Q Consensus 108 l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~~~A~~~G~-----~~~d~t~~d~~Eav~~ADI 181 (583)
+++ +++.|||.|-+|.+++..|.+. |. +|++.+|..++..+.+...+- .. ....+..+.++++|+
T Consensus 125 ~~~-k~vlIlGaGGaaraia~aL~~~------G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~--~~~~~~~~~~~~aDi 195 (284)
T PRK12549 125 ASL-ERVVQLGAGGAGAAVAHALLTL------GVERLTIFDVDPARAAALADELNARFPAARA--TAGSDLAAALAAADG 195 (284)
T ss_pred ccC-CEEEEECCcHHHHHHHHHHHHc------CCCEEEEECCCHHHHHHHHHHHHhhCCCeEE--EeccchHhhhCCCCE
Confidence 456 8999999999999999999988 87 788888876666666554321 11 002234556788999
Q ss_pred EEEeccchH
Q 007951 182 VLLLISDAA 190 (583)
Q Consensus 182 VILavpd~a 190 (583)
||.+||...
T Consensus 196 VInaTp~Gm 204 (284)
T PRK12549 196 LVHATPTGM 204 (284)
T ss_pred EEECCcCCC
Confidence 999998653
No 213
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.46 E-value=0.0061 Score=63.88 Aligned_cols=75 Identities=19% Similarity=0.210 Sum_probs=58.4
Q ss_pred hhcCCCEEEEEccchh-HHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 107 AFNGINQIGVIGWGSQ-GPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 107 ~l~gikkIgIIG~G~m-G~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
.++| +++.|||.|.. |..++.-|... |..|.+.... ..++.+.+++||+||.+
T Consensus 155 ~l~G-k~vvViGrs~iVGkPla~lL~~~------~atVt~~hs~-------------------t~~l~~~~~~ADIVV~a 208 (285)
T PRK14189 155 PLRG-AHAVVIGRSNIVGKPMAMLLLQA------GATVTICHSK-------------------TRDLAAHTRQADIVVAA 208 (285)
T ss_pred CCCC-CEEEEECCCCccHHHHHHHHHHC------CCEEEEecCC-------------------CCCHHHHhhhCCEEEEc
Confidence 4688 99999999988 99999999987 8777664211 24677889999999999
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEec
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a~ 212 (583)
++-.. ++.. ..+|+|++|++++
T Consensus 209 vG~~~---~i~~--~~ik~gavVIDVG 230 (285)
T PRK14189 209 VGKRN---VLTA--DMVKPGATVIDVG 230 (285)
T ss_pred CCCcC---ccCH--HHcCCCCEEEEcc
Confidence 99433 3332 6789999888763
No 214
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=96.42 E-value=0.017 Score=58.22 Aligned_cols=83 Identities=19% Similarity=0.106 Sum_probs=57.4
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHH-HHHcCcee--cCCCcC-CHhhh-hccCCeEEEec
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-ARAAGFTE--ENGTLG-DIYET-ISGSDLVLLLI 186 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~-A~~~G~~~--~d~t~~-d~~Ea-v~~ADIVILav 186 (583)
|+|.|||+|..|.++|+.|.+. |++|++-++..++..+. +.+.+... .+++-. .+.++ +.++|+++.++
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~------g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t 74 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEE------GHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAAT 74 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhC------CCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEee
Confidence 6899999999999999999998 99887766654443331 22233321 121111 13444 78899999999
Q ss_pred cchHHHHHHHHHHh
Q 007951 187 SDAAQADNYEKIFS 200 (583)
Q Consensus 187 pd~a~~~Vl~eI~~ 200 (583)
..+.+..++-.++.
T Consensus 75 ~~d~~N~i~~~la~ 88 (225)
T COG0569 75 GNDEVNSVLALLAL 88 (225)
T ss_pred CCCHHHHHHHHHHH
Confidence 99888877776553
No 215
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=96.42 E-value=0.014 Score=49.86 Aligned_cols=66 Identities=18% Similarity=0.200 Sum_probs=48.2
Q ss_pred hhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 007951 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (583)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVIL 184 (583)
..+++ ++++|+|.|.||.+++..|.+. +. ++.+.++ |++|-
T Consensus 19 ~~~~~-~~v~i~G~G~~g~~~a~~l~~~------~~~~v~v~~r-------------------------------di~i~ 60 (86)
T cd05191 19 KSLKG-KTVVVLGAGEVGKGIAKLLADE------GGKKVVLCDR-------------------------------DILVT 60 (86)
T ss_pred CCCCC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEEcC-------------------------------CEEEE
Confidence 34677 9999999999999999999886 43 5555433 99999
Q ss_pred eccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 185 LISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 185 avpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
+++...... ++....++++.+|.+.
T Consensus 61 ~~~~~~~~~--~~~~~~~~~~~~v~~~ 85 (86)
T cd05191 61 ATPAGVPVL--EEATAKINEGAVVIDL 85 (86)
T ss_pred cCCCCCCch--HHHHHhcCCCCEEEec
Confidence 998755432 2234556788887754
No 216
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=96.41 E-value=0.017 Score=54.04 Aligned_cols=67 Identities=18% Similarity=0.205 Sum_probs=44.2
Q ss_pred CEEEEEcc-chhHHHHHHHHHHhhhhhcCCc--eEEEEecCCcccHHHHHHc-------CceecCCCcCCHhhhhccCCe
Q 007951 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA-------GFTEENGTLGDIYETISGSDL 181 (583)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~--~ViVg~r~~s~s~~~A~~~-------G~~~~d~t~~d~~Eav~~ADI 181 (583)
+||+|||. |..|.++|..|... ++ ++++.++...+....+.+. +... .......+.+++||+
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~------~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~--~i~~~~~~~~~~aDi 72 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQ------GLADEIVLIDINEDKAEGEALDLSHASAPLPSPV--RITSGDYEALKDADI 72 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHT------TTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEE--EEEESSGGGGTTESE
T ss_pred CEEEEECCCChHHHHHHHHHHhC------CCCCceEEeccCcccceeeehhhhhhhhhccccc--ccccccccccccccE
Confidence 69999999 99999999999987 54 6666555533333333221 1100 001245678899999
Q ss_pred EEEec
Q 007951 182 VLLLI 186 (583)
Q Consensus 182 VILav 186 (583)
|+++.
T Consensus 73 vvita 77 (141)
T PF00056_consen 73 VVITA 77 (141)
T ss_dssp EEETT
T ss_pred EEEec
Confidence 99975
No 217
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=96.40 E-value=0.015 Score=57.62 Aligned_cols=84 Identities=12% Similarity=0.071 Sum_probs=56.9
Q ss_pred hhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcC-ceecCCCcCCHhhhhccCCeEEEe
Q 007951 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 107 ~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G-~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
.++| ++|.|||.|.+|...++.|.+. |.+|++..+.-.+........| +.. ..... ..+.+.++|+||.+
T Consensus 7 ~l~~-k~vLVIGgG~va~~ka~~Ll~~------ga~V~VIs~~~~~~l~~l~~~~~i~~-~~~~~-~~~~l~~adlViaa 77 (202)
T PRK06718 7 DLSN-KRVVIVGGGKVAGRRAITLLKY------GAHIVVISPELTENLVKLVEEGKIRW-KQKEF-EPSDIVDAFLVIAA 77 (202)
T ss_pred EcCC-CEEEEECCCHHHHHHHHHHHHC------CCeEEEEcCCCCHHHHHHHhCCCEEE-EecCC-ChhhcCCceEEEEc
Confidence 4789 9999999999999999999998 8887776554322222222333 221 00011 13457889999999
Q ss_pred ccchHHHHHHHHHH
Q 007951 186 ISDAAQADNYEKIF 199 (583)
Q Consensus 186 vpd~a~~~Vl~eI~ 199 (583)
|.+...-..+.+.+
T Consensus 78 T~d~elN~~i~~~a 91 (202)
T PRK06718 78 TNDPRVNEQVKEDL 91 (202)
T ss_pred CCCHHHHHHHHHHH
Confidence 99988876665444
No 218
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=96.40 E-value=0.017 Score=62.50 Aligned_cols=92 Identities=16% Similarity=0.164 Sum_probs=58.6
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHH-cCcee--cCCCc-CCHhhh-hccCCeEEEec
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGFTE--ENGTL-GDIYET-ISGSDLVLLLI 186 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~-~G~~~--~d~t~-~d~~Ea-v~~ADIVILav 186 (583)
|+|.|||+|.+|.++++.|++. |+++++..++. ...+.+.+ .|+.. .|.+. ....++ +.++|.|++++
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~------g~~v~vid~~~-~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~ 73 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGE------NNDVTVIDTDE-ERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVT 73 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCcEEEEECCH-HHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEec
Confidence 5899999999999999999988 88877665543 33444443 45422 11111 123344 78999999999
Q ss_pred cchHHHHHHHHHHhcC-CCCcEEEE
Q 007951 187 SDAAQADNYEKIFSCM-KPNSILGL 210 (583)
Q Consensus 187 pd~a~~~Vl~eI~~~L-k~GaiL~~ 210 (583)
++......+......+ ....++..
T Consensus 74 ~~~~~n~~~~~~~r~~~~~~~ii~~ 98 (453)
T PRK09496 74 DSDETNMVACQIAKSLFGAPTTIAR 98 (453)
T ss_pred CChHHHHHHHHHHHHhcCCCeEEEE
Confidence 9877665554433333 33344443
No 219
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=96.37 E-value=0.019 Score=59.62 Aligned_cols=92 Identities=18% Similarity=0.135 Sum_probs=60.4
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhh-hccCCeEEEeccchH
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET-ISGSDLVLLLISDAA 190 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Ea-v~~ADIVILavpd~a 190 (583)
+||||||||.||..++..|.+.. ..++++...++......+.. ...... +.+++++ ..+.|+|+=|-++++
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~---~~~~~l~~V~~~~~~~~~~~-~~~~~~----~~~l~~ll~~~~DlVVE~A~~~a 74 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADA---AQPCQLAALTRNAADLPPAL-AGRVAL----LDGLPGLLAWRPDLVVEAAGQQA 74 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCC---CCceEEEEEecCCHHHHHHh-hccCcc----cCCHHHHhhcCCCEEEECCCHHH
Confidence 79999999999999999987530 00245444344433222221 122332 6788886 688999999999998
Q ss_pred HHHHHHHHHhcCCCCc-EEEEecCc
Q 007951 191 QADNYEKIFSCMKPNS-ILGLSHGF 214 (583)
Q Consensus 191 ~~~Vl~eI~~~Lk~Ga-iL~~a~G~ 214 (583)
..+..+.+. +.|. +++.+-|-
T Consensus 75 v~e~~~~iL---~~g~dlvv~SvGA 96 (267)
T PRK13301 75 IAEHAEGCL---TAGLDMIICSAGA 96 (267)
T ss_pred HHHHHHHHH---hcCCCEEEEChhH
Confidence 888887764 3454 55566553
No 220
>PRK11579 putative oxidoreductase; Provisional
Probab=96.36 E-value=0.015 Score=61.41 Aligned_cols=84 Identities=10% Similarity=0.133 Sum_probs=55.2
Q ss_pred CEEEEEccchhHH-HHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHc-CceecCCCcCCHhhhhc--cCCeEEEecc
Q 007951 112 NQIGVIGWGSQGP-AQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETIS--GSDLVLLLIS 187 (583)
Q Consensus 112 kkIgIIG~G~mG~-A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~-G~~~~d~t~~d~~Eav~--~ADIVILavp 187 (583)
.+|||||+|.+|. .++..+... .+++++...+.+... .+... +... ..|.+|+++ +.|+|++++|
T Consensus 5 irvgiiG~G~i~~~~~~~~~~~~-----~~~~l~av~d~~~~~--~~~~~~~~~~----~~~~~ell~~~~vD~V~I~tp 73 (346)
T PRK11579 5 IRVGLIGYGYASKTFHAPLIAGT-----PGLELAAVSSSDATK--VKADWPTVTV----VSEPQHLFNDPNIDLIVIPTP 73 (346)
T ss_pred ceEEEECCCHHHHHHHHHHHhhC-----CCCEEEEEECCCHHH--HHhhCCCCce----eCCHHHHhcCCCCCEEEEcCC
Confidence 4899999999998 466666654 156655444443321 12223 2222 568889885 5799999999
Q ss_pred chHHHHHHHHHHhcCCCCcEEE
Q 007951 188 DAAQADNYEKIFSCMKPNSILG 209 (583)
Q Consensus 188 d~a~~~Vl~eI~~~Lk~GaiL~ 209 (583)
+..+.++.... |+.|+-|.
T Consensus 74 ~~~H~~~~~~a---l~aGkhVl 92 (346)
T PRK11579 74 NDTHFPLAKAA---LEAGKHVV 92 (346)
T ss_pred cHHHHHHHHHH---HHCCCeEE
Confidence 99998877654 34566544
No 221
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=96.36 E-value=0.037 Score=48.70 Aligned_cols=94 Identities=21% Similarity=0.206 Sum_probs=61.0
Q ss_pred EEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHh----hhhccCCeEEEeccch
Q 007951 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY----ETISGSDLVLLLISDA 189 (583)
Q Consensus 114 IgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~----Eav~~ADIVILavpd~ 189 (583)
|.|+|+|.+|..+++.|++. +.++++.. .++...+.+.+.|+..-.+...+.. .-+++||.|++++++.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~------~~~vvvid-~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d 73 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEG------GIDVVVID-RDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDD 73 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHT------TSEEEEEE-SSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSH
T ss_pred eEEEcCCHHHHHHHHHHHhC------CCEEEEEE-CCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCH
Confidence 57999999999999999998 77766544 4555678888888653222223322 2367899999999987
Q ss_pred HHHHHHH-HHHhcCCCCcEEEEecCc
Q 007951 190 AQADNYE-KIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 190 a~~~Vl~-eI~~~Lk~GaiL~~a~G~ 214 (583)
...-.+- .+....+...++..+..-
T Consensus 74 ~~n~~~~~~~r~~~~~~~ii~~~~~~ 99 (116)
T PF02254_consen 74 EENLLIALLARELNPDIRIIARVNDP 99 (116)
T ss_dssp HHHHHHHHHHHHHTTTSEEEEEESSH
T ss_pred HHHHHHHHHHHHHCCCCeEEEEECCH
Confidence 6654333 343333334566655543
No 222
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=96.29 E-value=0.019 Score=61.33 Aligned_cols=95 Identities=13% Similarity=0.113 Sum_probs=58.7
Q ss_pred CEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEE-EEecCCcccHHHHHHcCceec--CCCc--CCHhhhhccCCeEEEe
Q 007951 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEE--NGTL--GDIYETISGSDLVLLL 185 (583)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~Vi-Vg~r~~s~s~~~A~~~G~~~~--d~t~--~d~~Eav~~ADIVILa 185 (583)
+||+|||. |.+|..+++.|.+. .+++++ +..+..+.........+.... +-.+ .+.++.++++|+||+|
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~h-----P~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~a 75 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNH-----PEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLA 75 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcC-----CCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEEC
Confidence 58999998 99999999998854 134555 222222111111111221000 0001 2455666689999999
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEecCc
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
+|.....++..++.. .|..|+|.++-
T Consensus 76 lP~~~s~~~~~~~~~---~G~~VIDlS~~ 101 (346)
T TIGR01850 76 LPHGVSAELAPELLA---AGVKVIDLSAD 101 (346)
T ss_pred CCchHHHHHHHHHHh---CCCEEEeCChh
Confidence 999988888887643 57878877663
No 223
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=96.26 E-value=0.011 Score=62.67 Aligned_cols=128 Identities=20% Similarity=0.093 Sum_probs=78.9
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCcee--cCCCcCCHhhhhccCCeEEEe--cc
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE--ENGTLGDIYETISGSDLVLLL--IS 187 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~--~d~t~~d~~Eav~~ADIVILa--vp 187 (583)
-||.|||.|..|..-|+-...- |-+|.+.+.+..+....-...|... .-++...++++++++|+||-+ +|
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~gl------gA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIp 242 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGL------GADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIP 242 (371)
T ss_pred ccEEEECCccccchHHHHHhcc------CCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEec
Confidence 4899999999999877766543 7788888776544443333344331 112233478899999999975 55
Q ss_pred chHHHHHH-HHHHhcCCCCcEEEEe----cCchhhhhhcccccCC---CCccEEEeccCCCchhhHH
Q 007951 188 DAAQADNY-EKIFSCMKPNSILGLS----HGFLLGHLQSMGLDFP---KNIGVIAVCPKGMGPSVRR 246 (583)
Q Consensus 188 d~a~~~Vl-~eI~~~Lk~GaiL~~a----~G~~i~~ie~~~i~~p---~dv~VI~v~PngPg~~vR~ 246 (583)
-...+.++ ++..+.||||++|+|+ .|.- +....+...=| .+--+--+-||+||.+-|.
T Consensus 243 gakaPkLvt~e~vk~MkpGsVivDVAiDqGGc~-Et~~~TTh~~PtY~~~gvvhY~VaNmPgaVprT 308 (371)
T COG0686 243 GAKAPKLVTREMVKQMKPGSVIVDVAIDQGGCF-ETSHPTTHDDPTYEVDGVVHYGVANMPGAVPRT 308 (371)
T ss_pred CCCCceehhHHHHHhcCCCcEEEEEEEcCCCce-eccccccCCCCceeecCEEEEecCCCCccccch
Confidence 55555544 5788899999998866 3321 00000000101 1212335679999998653
No 224
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=96.25 E-value=0.013 Score=63.83 Aligned_cols=79 Identities=19% Similarity=0.183 Sum_probs=57.6
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCC-ceEEEEecCCcccHHHHHHcC---ce--ecCCC-cCCHhhhhccCCeEE
Q 007951 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAG---FT--EENGT-LGDIYETISGSDLVL 183 (583)
Q Consensus 111 ikkIgIIG~G~mG~A~A~nLrdsl~~~g~G-~~ViVg~r~~s~s~~~A~~~G---~~--~~d~t-~~d~~Eav~~ADIVI 183 (583)
+++|.|||+|.+|.+.|..|.++ | .+|.+..|+.++ .+++...+ +. .-|-. .....+++++.|+||
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~------~d~~V~iAdRs~~~-~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VI 73 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQN------GDGEVTIADRSKEK-CARIAELIGGKVEALQVDAADVDALVALIKDFDLVI 73 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhC------CCceEEEEeCCHHH-HHHHHhhccccceeEEecccChHHHHHHHhcCCEEE
Confidence 37899999999999999999988 6 689998887554 34443332 21 10100 123557899999999
Q ss_pred EeccchHHHHHHH
Q 007951 184 LLISDAAQADNYE 196 (583)
Q Consensus 184 Lavpd~a~~~Vl~ 196 (583)
.|.|+.....+++
T Consensus 74 n~~p~~~~~~i~k 86 (389)
T COG1748 74 NAAPPFVDLTILK 86 (389)
T ss_pred EeCCchhhHHHHH
Confidence 9999998887775
No 225
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=96.24 E-value=0.019 Score=59.81 Aligned_cols=64 Identities=30% Similarity=0.308 Sum_probs=39.8
Q ss_pred EEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccH----HHHHH---cCc--eecCCCcCCHhhhhccCCeEE
Q 007951 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSF----AEARA---AGF--TEENGTLGDIYETISGSDLVL 183 (583)
Q Consensus 114 IgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~----~~A~~---~G~--~~~d~t~~d~~Eav~~ADIVI 183 (583)
|+|||.|.||..+|..|... |+ +|++.+...+... +.... .+. .. ....+ .+.+++||+||
T Consensus 1 I~IIGaG~vG~~ia~~la~~------~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I--~~t~d-~~~l~dADiVI 71 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALK------ELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKV--TGTND-YEDIAGSDVVV 71 (300)
T ss_pred CEEECCCHHHHHHHHHHHhC------CCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEE--EEcCC-HHHhCCCCEEE
Confidence 68999999999999998876 65 7766655433211 11111 000 10 00234 45689999999
Q ss_pred Eec
Q 007951 184 LLI 186 (583)
Q Consensus 184 Lav 186 (583)
++.
T Consensus 72 it~ 74 (300)
T cd01339 72 ITA 74 (300)
T ss_pred Eec
Confidence 976
No 226
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.18 E-value=0.013 Score=61.27 Aligned_cols=75 Identities=13% Similarity=0.205 Sum_probs=56.8
Q ss_pred hhhcCCCEEEEEccch-hHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 007951 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (583)
Q Consensus 106 ~~l~gikkIgIIG~G~-mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVIL 184 (583)
-.++| +++.|||.|. .|.+++..|.+. |..|.+..++ ..++.+.+++||+||.
T Consensus 155 i~l~G-k~vvViG~gg~vGkpia~~L~~~------gatVtv~~~~-------------------t~~L~~~~~~aDIvI~ 208 (283)
T PRK14192 155 IELAG-KHAVVVGRSAILGKPMAMMLLNA------NATVTICHSR-------------------TQNLPELVKQADIIVG 208 (283)
T ss_pred CCCCC-CEEEEECCcHHHHHHHHHHHHhC------CCEEEEEeCC-------------------chhHHHHhccCCEEEE
Confidence 35788 9999999997 999999999987 8777777652 1234566789999999
Q ss_pred eccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 185 LISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 185 avpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
+|+... .+. .+.+++|++|+|+
T Consensus 209 AtG~~~---~v~--~~~lk~gavViDv 230 (283)
T PRK14192 209 AVGKPE---LIK--KDWIKQGAVVVDA 230 (283)
T ss_pred ccCCCC---cCC--HHHcCCCCEEEEE
Confidence 996222 232 2457999998876
No 227
>PRK10206 putative oxidoreductase; Provisional
Probab=96.16 E-value=0.016 Score=61.52 Aligned_cols=87 Identities=11% Similarity=0.148 Sum_probs=55.2
Q ss_pred CEEEEEccchhHH-HHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhc--cCCeEEEeccc
Q 007951 112 NQIGVIGWGSQGP-AQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (583)
Q Consensus 112 kkIgIIG~G~mG~-A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~--~ADIVILavpd 188 (583)
.+|||||+|.++. .++..+.... .+++++...+.+.+..+.+.+.+... ...+.+|+++ +.|+|++++|+
T Consensus 2 irvgiiG~G~~~~~~h~~~~~~~~----~~~~l~av~d~~~~~~~~~~~~~~~~---~~~~~~ell~~~~iD~V~I~tp~ 74 (344)
T PRK10206 2 INCAFIGFGKSTTRYHLPYVLNRK----DSWHVAHIFRRHAKPEEQAPIYSHIH---FTSDLDEVLNDPDVKLVVVCTHA 74 (344)
T ss_pred eEEEEECCCHHHhheehhhHhcCC----CCEEEEEEEcCChhHHHHHHhcCCCc---ccCCHHHHhcCCCCCEEEEeCCc
Confidence 4799999999764 4455554320 14565544444433344555565321 1468899885 57999999999
Q ss_pred hHHHHHHHHHHhcCCCCcEE
Q 007951 189 AAQADNYEKIFSCMKPNSIL 208 (583)
Q Consensus 189 ~a~~~Vl~eI~~~Lk~GaiL 208 (583)
..+.++..+. |+.|+-|
T Consensus 75 ~~H~~~~~~a---l~aGkhV 91 (344)
T PRK10206 75 DSHFEYAKRA---LEAGKNV 91 (344)
T ss_pred hHHHHHHHHH---HHcCCcE
Confidence 9998877654 3446533
No 228
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=96.15 E-value=0.01 Score=61.57 Aligned_cols=76 Identities=13% Similarity=0.035 Sum_probs=54.4
Q ss_pred hcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHHcCceecCCCc---CCHhhhhccCCeEE
Q 007951 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTL---GDIYETISGSDLVL 183 (583)
Q Consensus 108 l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~~~A~~~G~~~~d~t~---~d~~Eav~~ADIVI 183 (583)
+++ +++.|||.|-+|.+++..|.+. |. +|.|.+|..++..+.+...+....-... .+..+.+.++|+||
T Consensus 123 ~~~-k~vlvlGaGGaarai~~aL~~~------G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVI 195 (282)
T TIGR01809 123 LAG-FRGLVIGAGGTSRAAVYALASL------GVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLV 195 (282)
T ss_pred cCC-ceEEEEcCcHHHHHHHHHHHHc------CCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEE
Confidence 567 8999999999999999999988 86 6888888766666666554321000001 12235568899999
Q ss_pred EeccchH
Q 007951 184 LLISDAA 190 (583)
Q Consensus 184 Lavpd~a 190 (583)
.+||...
T Consensus 196 naTp~g~ 202 (282)
T TIGR01809 196 STVPADV 202 (282)
T ss_pred ECCCCCC
Confidence 9999754
No 229
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=96.11 E-value=0.017 Score=63.70 Aligned_cols=90 Identities=20% Similarity=0.228 Sum_probs=67.8
Q ss_pred hcCCCEEEEEcc----chhHHHHHHHHHHhhhhhcCCc--eEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCe
Q 007951 108 FNGINQIGVIGW----GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDL 181 (583)
Q Consensus 108 l~gikkIgIIG~----G~mG~A~A~nLrdsl~~~g~G~--~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADI 181 (583)
|.= ++|+|||. |+.|.-+.++|++. |+ +|+..+... . .-.|+.. ..++.|+-...|+
T Consensus 5 ~~p-~siavvGaS~~~~~~g~~~~~~l~~~------gf~g~v~~Vnp~~-~-----~i~G~~~----~~sl~~lp~~~Dl 67 (447)
T TIGR02717 5 FNP-KSVAVIGASRDPGKVGYAIMKNLIEG------GYKGKIYPVNPKA-G-----EILGVKA----YPSVLEIPDPVDL 67 (447)
T ss_pred cCC-CEEEEEccCCCCCchHHHHHHHHHhC------CCCCcEEEECCCC-C-----ccCCccc----cCCHHHCCCCCCE
Confidence 444 89999999 88999999999988 76 453333221 1 2356664 5678887778899
Q ss_pred EEEeccchHHHHHHHHHHhcCCCCcEEEEecCch
Q 007951 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (583)
Q Consensus 182 VILavpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~~ 215 (583)
+++++|++...+++++... ..-..+|++++||.
T Consensus 68 avi~vp~~~~~~~l~e~~~-~gv~~~vi~s~gf~ 100 (447)
T TIGR02717 68 AVIVVPAKYVPQVVEECGE-KGVKGAVVITAGFK 100 (447)
T ss_pred EEEecCHHHHHHHHHHHHh-cCCCEEEEECCCcc
Confidence 9999999999999998654 34456788999985
No 230
>PRK04148 hypothetical protein; Provisional
Probab=95.97 E-value=0.063 Score=50.56 Aligned_cols=92 Identities=13% Similarity=0.126 Sum_probs=67.5
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceec-CCCcCCHhhhhccCCeEEEecc
Q 007951 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETISGSDLVLLLIS 187 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~-d~t~~d~~Eav~~ADIVILavp 187 (583)
++ ++|.+||+| -|.++|..|.+. |++|+ +.+.++...+.+++.+.... +..+....+.-+++|+|.-.-|
T Consensus 16 ~~-~kileIG~G-fG~~vA~~L~~~------G~~Vi-aIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirp 86 (134)
T PRK04148 16 KN-KKIVELGIG-FYFKVAKKLKES------GFDVI-VIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRP 86 (134)
T ss_pred cC-CEEEEEEec-CCHHHHHHHHHC------CCEEE-EEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCC
Confidence 56 789999999 888999999988 98864 56666677888888776421 2223334577899999999999
Q ss_pred chHHHHHHHHHHhcCCCCcEEE
Q 007951 188 DAAQADNYEKIFSCMKPNSILG 209 (583)
Q Consensus 188 d~a~~~Vl~eI~~~Lk~GaiL~ 209 (583)
|.....-+-+++..+.-.-+|.
T Consensus 87 p~el~~~~~~la~~~~~~~~i~ 108 (134)
T PRK04148 87 PRDLQPFILELAKKINVPLIIK 108 (134)
T ss_pred CHHHHHHHHHHHHHcCCCEEEE
Confidence 8777766667777665444444
No 231
>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]
Probab=95.89 E-value=0.027 Score=59.71 Aligned_cols=125 Identities=21% Similarity=0.186 Sum_probs=86.4
Q ss_pred cccccchhhhhhhhcccccceeeeccccccccc-hhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCC
Q 007951 72 LDFETSVFKKDMISLADRDEYIVRGGRDLFNLL-PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (583)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~e~v~~~~r~~f~~~-~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~ 150 (583)
.+-|-++-+.|--+|-|-.|-++.| .... .--+.| |...|.|||-.|..-|+.||.. |..|+|..-+.
T Consensus 179 iNVNDSVTKsKFDnLygcreSl~Dg----ikraTDvM~aG-Kv~Vv~GYGdVGKgCaqaLkg~------g~~VivTEiDP 247 (434)
T KOG1370|consen 179 INVNDSVTKSKFDNLYGCRESLLDG----IKRATDVMIAG-KVAVVCGYGDVGKGCAQALKGF------GARVIVTEIDP 247 (434)
T ss_pred eeccchhhhhhccccccchhhhhhh----hhhhhhheecc-cEEEEeccCccchhHHHHHhhc------CcEEEEeccCc
Confidence 4556666666665666666644432 1111 123455 7788999999999999999977 87877764433
Q ss_pred cccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccchHHHHHHHHHHhcCCCCcEEEEecCch
Q 007951 151 SRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (583)
Q Consensus 151 s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~~ 215 (583)
-. .-.|.-.|+. +.+++|+++++||++-++--..+ +..+....||.++||.-..-|.
T Consensus 248 I~-ALQAaMeG~~-----V~tm~ea~~e~difVTtTGc~di--i~~~H~~~mk~d~IvCN~Ghfd 304 (434)
T KOG1370|consen 248 IC-ALQAAMEGYE-----VTTLEEAIREVDIFVTTTGCKDI--ITGEHFDQMKNDAIVCNIGHFD 304 (434)
T ss_pred hH-HHHHHhhccE-----eeeHHHhhhcCCEEEEccCCcch--hhHHHHHhCcCCcEEecccccc
Confidence 23 3344456888 57899999999999999876554 4456778899999987665554
No 232
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=95.85 E-value=0.056 Score=56.84 Aligned_cols=116 Identities=15% Similarity=0.218 Sum_probs=76.1
Q ss_pred CEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhcc--CCeEEEeccc
Q 007951 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLISD 188 (583)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~--ADIVILavpd 188 (583)
.||.|.|. |++|..+..+|++. |+.+++......-. .+-.|+.. ..++.|+-.. .|+.++++|+
T Consensus 9 ~~~~v~~~~~~~g~~~l~~l~~~------g~~~v~pVnp~~~~---~~v~G~~~----y~sv~dlp~~~~~DlAvi~vp~ 75 (291)
T PRK05678 9 TKVIVQGITGKQGTFHTEQMLAY------GTNIVGGVTPGKGG---TTVLGLPV----FNTVAEAVEATGANASVIYVPP 75 (291)
T ss_pred CeEEEeCCCchHHHHHHHHHHHC------CCCEEEEECCCCCC---CeEeCeec----cCCHHHHhhccCCCEEEEEcCH
Confidence 68899996 88999999999987 77644344332000 12247664 5678887766 8999999999
Q ss_pred hHHHHHHHHHHhcCCCCcEEEEecCchhhhhhc-ccccCCCCccEEEeccCCCchh
Q 007951 189 AAQADNYEKIFSCMKPNSILGLSHGFLLGHLQS-MGLDFPKNIGVIAVCPKGMGPS 243 (583)
Q Consensus 189 ~a~~~Vl~eI~~~Lk~GaiL~~a~G~~i~~ie~-~~i~~p~dv~VI~v~PngPg~~ 243 (583)
....+++++... ..-..+|++++||.....++ ..+.-..++.++. ||+.|-.
T Consensus 76 ~~v~~~l~e~~~-~gvk~avI~s~Gf~~~~~~~l~~~a~~~girvlG--PNc~Gi~ 128 (291)
T PRK05678 76 PFAADAILEAID-AGIDLIVCITEGIPVLDMLEVKAYLERKKTRLIG--PNCPGII 128 (291)
T ss_pred HHHHHHHHHHHH-CCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEEC--CCCCccc
Confidence 999999988554 22345788999997542000 0011123555554 8887765
No 233
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.78 E-value=0.03 Score=58.82 Aligned_cols=75 Identities=17% Similarity=0.163 Sum_probs=58.1
Q ss_pred hhcCCCEEEEEccch-hHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 107 AFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 107 ~l~gikkIgIIG~G~-mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
.++| +++.|||.|. .|..++.-|... |..|.+..+. +.++.+.+++||+||.+
T Consensus 156 ~l~G-k~vvViGrs~iVG~Pla~lL~~~------~atVtv~hs~-------------------T~~l~~~~~~ADIvi~a 209 (285)
T PRK10792 156 DTYG-LNAVVVGASNIVGRPMSLELLLA------GCTVTVCHRF-------------------TKNLRHHVRNADLLVVA 209 (285)
T ss_pred CCCC-CEEEEECCCcccHHHHHHHHHHC------CCeEEEEECC-------------------CCCHHHHHhhCCEEEEc
Confidence 5789 9999999998 999999999887 7777776432 23567889999999999
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEec
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a~ 212 (583)
+.-... +. .+++++|++|+|++
T Consensus 210 vG~p~~---v~--~~~vk~gavVIDvG 231 (285)
T PRK10792 210 VGKPGF---IP--GEWIKPGAIVIDVG 231 (285)
T ss_pred CCCccc---cc--HHHcCCCcEEEEcc
Confidence 953332 22 25689999988864
No 234
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=95.72 E-value=0.063 Score=56.75 Aligned_cols=66 Identities=18% Similarity=0.206 Sum_probs=43.1
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc--eEEEEecCCcccHHHHHH----c----CceecCCCcCCHhhhhccCCe
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA----A----GFTEENGTLGDIYETISGSDL 181 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~--~ViVg~r~~s~s~~~A~~----~----G~~~~d~t~~d~~Eav~~ADI 181 (583)
+||+|||.|.+|.++|..|... |+ ++.+.+...++....+.+ . .... ..+..+.+++||+
T Consensus 7 ~ki~iiGaG~vG~~~a~~l~~~------~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i----~~~~~~~~~~adi 76 (315)
T PRK00066 7 NKVVLVGDGAVGSSYAYALVNQ------GIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKI----YAGDYSDCKDADL 76 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEE----EeCCHHHhCCCCE
Confidence 7999999999999999999887 76 566665543332222221 1 1111 1123456899999
Q ss_pred EEEecc
Q 007951 182 VLLLIS 187 (583)
Q Consensus 182 VILavp 187 (583)
||++.-
T Consensus 77 vIitag 82 (315)
T PRK00066 77 VVITAG 82 (315)
T ss_pred EEEecC
Confidence 999643
No 235
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=95.70 E-value=0.025 Score=56.29 Aligned_cols=116 Identities=13% Similarity=0.219 Sum_probs=68.1
Q ss_pred ccccchhhhcCCCEEEEEccchhHHHHHHHH--HHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhc
Q 007951 100 LFNLLPDAFNGINQIGVIGWGSQGPAQAQNL--RDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS 177 (583)
Q Consensus 100 ~f~~~~~~l~gikkIgIIG~G~mG~A~A~nL--rdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~ 177 (583)
.|.++...=+- .++.|||+|++|.|++.-- .+. |.+++...+.++...-.-. .++...+ ..++++.++
T Consensus 74 ff~~~Lg~~~~-tnviiVG~GnlG~All~Y~f~~~~------~~~iv~~FDv~~~~VG~~~-~~v~V~~--~d~le~~v~ 143 (211)
T COG2344 74 FFDDLLGQDKT-TNVIIVGVGNLGRALLNYNFSKKN------GMKIVAAFDVDPDKVGTKI-GDVPVYD--LDDLEKFVK 143 (211)
T ss_pred HHHHHhCCCcc-eeEEEEccChHHHHHhcCcchhhc------CceEEEEecCCHHHhCccc-CCeeeec--hHHHHHHHH
Confidence 34444333333 6899999999999997532 233 6777777776554222211 2233211 345566676
Q ss_pred --cCCeEEEeccchHHHHHHHHHHh-cCCCCcEEEEecCchhhhhhcccccCCCCccEEEec
Q 007951 178 --GSDLVLLLISDAAQADNYEKIFS-CMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVC 236 (583)
Q Consensus 178 --~ADIVILavpd~a~~~Vl~eI~~-~Lk~GaiL~~a~G~~i~~ie~~~i~~p~dv~VI~v~ 236 (583)
+.|+.+|+||-....++.+.+.. .+| .+|-|+..- +..|+++.|.-+.
T Consensus 144 ~~dv~iaiLtVPa~~AQ~vad~Lv~aGVk--GIlNFtPv~---------l~~pe~V~V~~iD 194 (211)
T COG2344 144 KNDVEIAILTVPAEHAQEVADRLVKAGVK--GILNFTPVR---------LQVPEGVIVENID 194 (211)
T ss_pred hcCccEEEEEccHHHHHHHHHHHHHcCCc--eEEeccceE---------ecCCCCcEEEEee
Confidence 78999999997777777776433 232 255555321 2456776665443
No 236
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=95.67 E-value=0.039 Score=62.21 Aligned_cols=94 Identities=15% Similarity=0.143 Sum_probs=64.7
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceec--C----C-----C--cCC-------
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--N----G-----T--LGD------- 171 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~--d----~-----t--~~d------- 171 (583)
.++.|||+|.+|...++.++.. |..|++.+++ ....+.++..|...- + + + ..+
T Consensus 165 akVlViGaG~iGl~Aa~~ak~l------GA~V~v~d~~-~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~ 237 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSL------GAIVRAFDTR-PEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAE 237 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCC-HHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHH
Confidence 6999999999999999999987 8877665554 445778887776520 0 0 0 001
Q ss_pred ---HhhhhccCCeEEEec--cchHHHH-HHHHHHhcCCCCcEEEEec
Q 007951 172 ---IYETISGSDLVLLLI--SDAAQAD-NYEKIFSCMKPNSILGLSH 212 (583)
Q Consensus 172 ---~~Eav~~ADIVILav--pd~a~~~-Vl~eI~~~Lk~GaiL~~a~ 212 (583)
..+.++++|+||.++ |-...+. +.++....||+|.+|+|.+
T Consensus 238 ~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDlA 284 (511)
T TIGR00561 238 MELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDLA 284 (511)
T ss_pred HHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEee
Confidence 335578899999987 2211223 3346778899999988763
No 237
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=95.62 E-value=0.039 Score=52.70 Aligned_cols=87 Identities=15% Similarity=0.117 Sum_probs=57.7
Q ss_pred cccchhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcC-ceecCCCcCCHhhhhccC
Q 007951 101 FNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEENGTLGDIYETISGS 179 (583)
Q Consensus 101 f~~~~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G-~~~~d~t~~d~~Eav~~A 179 (583)
|+.. =.++| ++|.|||.|.+|...++.|.+. |.+|.|.... ...+. .+.+ +.. ...... ++-+.++
T Consensus 5 ~P~~-l~l~~-~~vlVvGGG~va~rka~~Ll~~------ga~V~VIsp~--~~~~l-~~l~~i~~-~~~~~~-~~dl~~a 71 (157)
T PRK06719 5 YPLM-FNLHN-KVVVIIGGGKIAYRKASGLKDT------GAFVTVVSPE--ICKEM-KELPYITW-KQKTFS-NDDIKDA 71 (157)
T ss_pred cceE-EEcCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEcCc--cCHHH-HhccCcEE-EecccC-hhcCCCc
Confidence 4533 46889 9999999999999999999998 8887766332 12222 2222 221 111112 2346889
Q ss_pred CeEEEeccchHHHHHHHHHHh
Q 007951 180 DLVLLLISDAAQADNYEKIFS 200 (583)
Q Consensus 180 DIVILavpd~a~~~Vl~eI~~ 200 (583)
|+||.+|.+...-..+.....
T Consensus 72 ~lViaaT~d~e~N~~i~~~a~ 92 (157)
T PRK06719 72 HLIYAATNQHAVNMMVKQAAH 92 (157)
T ss_pred eEEEECCCCHHHHHHHHHHHH
Confidence 999999999887766665543
No 238
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=95.60 E-value=0.019 Score=63.00 Aligned_cols=82 Identities=18% Similarity=0.137 Sum_probs=48.7
Q ss_pred CEEEEEccchhHHHHHH--HHHHhhhhhcCCceEEEEecCCcccHHHHH--------HcCceecCCCcCCHhhhhccCCe
Q 007951 112 NQIGVIGWGSQGPAQAQ--NLRDSLAEAKSDIVVKVGLRKGSRSFAEAR--------AAGFTEENGTLGDIYETISGSDL 181 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~--nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~--------~~G~~~~d~t~~d~~Eav~~ADI 181 (583)
+||+|||.|++|.+.+. .+....+ -.|.+|++.++..++ .+... ..+....-..+.|..+++++||+
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~--~~g~eV~L~Did~e~-l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~ 77 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPE--LSGSTIALMDIDEER-LETVEILAKKIVEELGAPLKIEATTDRREALDGADF 77 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCC--CCCCEEEEECCCHHH-HHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCE
Confidence 48999999999999776 4542101 115677766554322 22111 11111000114577899999999
Q ss_pred EEEeccchHHHHHHH
Q 007951 182 VLLLISDAAQADNYE 196 (583)
Q Consensus 182 VILavpd~a~~~Vl~ 196 (583)
||.+++........+
T Consensus 78 Vi~ai~~~~~~~~~~ 92 (423)
T cd05297 78 VINTIQVGGHEYTET 92 (423)
T ss_pred EEEeeEecCccchhh
Confidence 999999766554443
No 239
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=95.59 E-value=0.1 Score=49.05 Aligned_cols=66 Identities=27% Similarity=0.278 Sum_probs=49.0
Q ss_pred EEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCC---HhhhhccCCeEEEeccc
Q 007951 114 IGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVLLLISD 188 (583)
Q Consensus 114 IgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d---~~Eav~~ADIVILavpd 188 (583)
|.|+|. |.+|..+++.|.++ |++|++..|+.++..+ ..++..-.....+ +.++++++|.||.++++
T Consensus 1 I~V~GatG~vG~~l~~~L~~~------~~~V~~~~R~~~~~~~---~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~ 70 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRR------GHEVTALVRSPSKAED---SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGP 70 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHT------TSEEEEEESSGGGHHH---CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHS
T ss_pred eEEECCCChHHHHHHHHHHHC------CCEEEEEecCchhccc---ccccccceeeehhhhhhhhhhhhcchhhhhhhh
Confidence 689995 99999999999999 9999888887654333 4444321222334 35678899999999984
No 240
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=95.59 E-value=0.026 Score=68.30 Aligned_cols=83 Identities=16% Similarity=0.135 Sum_probs=52.8
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhc------C---CceEEEEecCCcccHHHHHHc-Cc--eecCCCcCCHhh---hh
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAK------S---DIVVKVGLRKGSRSFAEARAA-GF--TEENGTLGDIYE---TI 176 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g------~---G~~ViVg~r~~s~s~~~A~~~-G~--~~~d~t~~d~~E---av 176 (583)
++|+|||+|.+|..++..|.+. .+.. . +..|.|+++...+..+.+... ++ ...| +.+.++ ++
T Consensus 570 ~rIlVLGAG~VG~~~a~~La~~-~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lD--v~D~e~L~~~v 646 (1042)
T PLN02819 570 QNVLILGAGRVCRPAAEYLASV-KTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLD--VSDSESLLKYV 646 (1042)
T ss_pred CcEEEECCCHHHHHHHHHHHhC-cCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEee--cCCHHHHHHhh
Confidence 8999999999999999999864 1000 0 112666655433333333333 42 1101 345444 44
Q ss_pred ccCCeEEEeccchHHHHHHHH
Q 007951 177 SGSDLVLLLISDAAQADNYEK 197 (583)
Q Consensus 177 ~~ADIVILavpd~a~~~Vl~e 197 (583)
+++|+|++|+|+..+..+...
T Consensus 647 ~~~DaVIsalP~~~H~~VAka 667 (1042)
T PLN02819 647 SQVDVVISLLPASCHAVVAKA 667 (1042)
T ss_pred cCCCEEEECCCchhhHHHHHH
Confidence 689999999999988887764
No 241
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=95.57 E-value=0.017 Score=57.37 Aligned_cols=81 Identities=10% Similarity=0.190 Sum_probs=51.2
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhcc--CCeEEEeccch
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLISDA 189 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~--ADIVILavpd~ 189 (583)
++|+|||+|.+|.+++..+... . .|++++...+.++...... -.|+.. ....+..+.+++ .|+|++++|+.
T Consensus 85 ~rV~IIGaG~iG~~l~~~~~~~--~--~g~~ivgv~D~d~~~~~~~-i~g~~v--~~~~~l~~li~~~~iD~ViIa~P~~ 157 (213)
T PRK05472 85 WNVALVGAGNLGRALLNYNGFE--K--RGFKIVAAFDVDPEKIGTK-IGGIPV--YHIDELEEVVKENDIEIGILTVPAE 157 (213)
T ss_pred cEEEEECCCHHHHHHHHhhhcc--c--CCcEEEEEEECChhhcCCE-eCCeEE--cCHHHHHHHHHHCCCCEEEEeCCch
Confidence 6899999999999998864321 1 2777655454433211111 123321 013456677654 99999999999
Q ss_pred HHHHHHHHHH
Q 007951 190 AQADNYEKIF 199 (583)
Q Consensus 190 a~~~Vl~eI~ 199 (583)
.+.++...+.
T Consensus 158 ~~~~i~~~l~ 167 (213)
T PRK05472 158 AAQEVADRLV 167 (213)
T ss_pred hHHHHHHHHH
Confidence 9887776554
No 242
>PRK14982 acyl-ACP reductase; Provisional
Probab=95.55 E-value=0.026 Score=60.61 Aligned_cols=94 Identities=15% Similarity=0.157 Sum_probs=61.9
Q ss_pred hhhcCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEE
Q 007951 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (583)
Q Consensus 106 ~~l~gikkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVI 183 (583)
..+++ ++|.|+|. |.||..+++.|... .|. ++++..|...+....+.+.+.. ...+..+++.++|+|+
T Consensus 151 ~~l~~-k~VLVtGAtG~IGs~lar~L~~~-----~gv~~lilv~R~~~rl~~La~el~~~----~i~~l~~~l~~aDiVv 220 (340)
T PRK14982 151 IDLSK-ATVAVVGATGDIGSAVCRWLDAK-----TGVAELLLVARQQERLQELQAELGGG----KILSLEEALPEADIVV 220 (340)
T ss_pred cCcCC-CEEEEEccChHHHHHHHHHHHhh-----CCCCEEEEEcCCHHHHHHHHHHhccc----cHHhHHHHHccCCEEE
Confidence 45788 99999998 89999999999743 043 6666666544444445443311 1346778999999999
Q ss_pred EeccchHHHHHHHHHHhcCCCCcEEEEec
Q 007951 184 LLISDAAQADNYEKIFSCMKPNSILGLSH 212 (583)
Q Consensus 184 Lavpd~a~~~Vl~eI~~~Lk~GaiL~~a~ 212 (583)
.++...... ++. ...++++.+++|.+
T Consensus 221 ~~ts~~~~~-~I~--~~~l~~~~~viDiA 246 (340)
T PRK14982 221 WVASMPKGV-EID--PETLKKPCLMIDGG 246 (340)
T ss_pred ECCcCCcCC-cCC--HHHhCCCeEEEEec
Confidence 988743221 111 12346777777663
No 243
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=95.53 E-value=0.07 Score=54.48 Aligned_cols=65 Identities=28% Similarity=0.316 Sum_probs=41.8
Q ss_pred EEEEcc-chhHHHHHHHHHHhhhhhcCC----ceEEEEecCCcccHHHHHH-------c-CceecCCCcCCHhhhhccCC
Q 007951 114 IGVIGW-GSQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRSFAEARA-------A-GFTEENGTLGDIYETISGSD 180 (583)
Q Consensus 114 IgIIG~-G~mG~A~A~nLrdsl~~~g~G----~~ViVg~r~~s~s~~~A~~-------~-G~~~~d~t~~d~~Eav~~AD 180 (583)
|+|||. |.+|..++..|... | .++.+.+...++....+.+ . .... ....|..+++++||
T Consensus 1 I~IIGagG~vG~~ia~~l~~~------~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i--~~~~d~~~~~~~aD 72 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADG------SVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKV--SITDDPYEAFKDAD 72 (263)
T ss_pred CEEECCCChHHHHHHHHHHhC------CCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEE--EECCchHHHhCCCC
Confidence 689999 99999999999887 6 4666665443322211111 1 1111 01345578999999
Q ss_pred eEEEec
Q 007951 181 LVLLLI 186 (583)
Q Consensus 181 IVILav 186 (583)
+||++.
T Consensus 73 iVv~t~ 78 (263)
T cd00650 73 VVIITA 78 (263)
T ss_pred EEEECC
Confidence 999954
No 244
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=95.51 E-value=0.046 Score=51.60 Aligned_cols=74 Identities=15% Similarity=0.158 Sum_probs=55.8
Q ss_pred hhcCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 107 ~l~gikkIgIIG~G-~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
.++| ++|.|||-+ ..|..++.-|.+. |..|.+..++ ..+.++.+++||+|+.+
T Consensus 25 ~~~g-k~v~VvGrs~~vG~pla~lL~~~------gatV~~~~~~-------------------t~~l~~~v~~ADIVvsA 78 (140)
T cd05212 25 RLDG-KKVLVVGRSGIVGAPLQCLLQRD------GATVYSCDWK-------------------TIQLQSKVHDADVVVVG 78 (140)
T ss_pred CCCC-CEEEEECCCchHHHHHHHHHHHC------CCEEEEeCCC-------------------CcCHHHHHhhCCEEEEe
Confidence 5788 999999976 7888999988877 8887765432 12566789999999999
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
+.-.. +++ .+.+|||++|++.
T Consensus 79 tg~~~---~i~--~~~ikpGa~Vidv 99 (140)
T cd05212 79 SPKPE---KVP--TEWIKPGATVINC 99 (140)
T ss_pred cCCCC---ccC--HHHcCCCCEEEEc
Confidence 98652 233 3458999987754
No 245
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=95.46 E-value=0.033 Score=55.54 Aligned_cols=92 Identities=17% Similarity=0.148 Sum_probs=60.8
Q ss_pred hhhcCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCc--CC----Hhhhhcc
Q 007951 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL--GD----IYETISG 178 (583)
Q Consensus 106 ~~l~gikkIgIIG~G-~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~--~d----~~Eav~~ 178 (583)
..++| |+|.|||-+ ..|..++.-|.+. |..|.+.+.+.-.......... ...+ .+ ..+.+++
T Consensus 58 ~~l~G-K~vvVIGrS~iVGkPla~lL~~~------~AtVti~~~~~~~~~~~~~~~~----hs~t~~~~~~~~l~~~~~~ 126 (197)
T cd01079 58 NRLYG-KTITIINRSEVVGRPLAALLAND------GARVYSVDINGIQVFTRGESIR----HEKHHVTDEEAMTLDCLSQ 126 (197)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHHHC------CCEEEEEecCcccccccccccc----cccccccchhhHHHHHhhh
Confidence 35889 999999987 7899999999887 8888776432211100000000 0011 12 6688999
Q ss_pred CCeEEEeccchHHHHHHHHHHhcCCCCcEEEEec
Q 007951 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (583)
Q Consensus 179 ADIVILavpd~a~~~Vl~eI~~~Lk~GaiL~~a~ 212 (583)
||+||.+++..... +. .+.+|+|++|++++
T Consensus 127 ADIVIsAvG~~~~~--i~--~d~ik~GavVIDVG 156 (197)
T cd01079 127 SDVVITGVPSPNYK--VP--TELLKDGAICINFA 156 (197)
T ss_pred CCEEEEccCCCCCc--cC--HHHcCCCcEEEEcC
Confidence 99999999965441 22 34578999999875
No 246
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=95.45 E-value=0.043 Score=48.49 Aligned_cols=76 Identities=20% Similarity=0.199 Sum_probs=49.3
Q ss_pred hhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEec
Q 007951 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (583)
Q Consensus 107 ~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILav 186 (583)
.++| ++|.|||.|..|..=++.|.+. |.+|++..... ...+..+... -...++.+.++|+|++++
T Consensus 4 ~l~~-~~vlVvGgG~va~~k~~~Ll~~------gA~v~vis~~~-----~~~~~~i~~~---~~~~~~~l~~~~lV~~at 68 (103)
T PF13241_consen 4 DLKG-KRVLVVGGGPVAARKARLLLEA------GAKVTVISPEI-----EFSEGLIQLI---RREFEEDLDGADLVFAAT 68 (103)
T ss_dssp --TT--EEEEEEESHHHHHHHHHHCCC------TBEEEEEESSE-----HHHHTSCEEE---ESS-GGGCTTESEEEE-S
T ss_pred EcCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEECCch-----hhhhhHHHHH---hhhHHHHHhhheEEEecC
Confidence 3678 9999999999999999999998 88887765542 1111222211 123346688999999999
Q ss_pred cchHHHHHHHH
Q 007951 187 SDAAQADNYEK 197 (583)
Q Consensus 187 pd~a~~~Vl~e 197 (583)
.+....+-+.+
T Consensus 69 ~d~~~n~~i~~ 79 (103)
T PF13241_consen 69 DDPELNEAIYA 79 (103)
T ss_dssp S-HHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 98776554443
No 247
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=95.43 E-value=0.028 Score=58.89 Aligned_cols=96 Identities=16% Similarity=0.126 Sum_probs=64.7
Q ss_pred hhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHHcCceecCCCcCCH--hhhhccCCeEE
Q 007951 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDI--YETISGSDLVL 183 (583)
Q Consensus 107 ~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~--~Eav~~ADIVI 183 (583)
..+| +++.|+|.|=.+.|++..|.+. |. +|+|.+|..++..+.+...+-.......... .+...++|+||
T Consensus 123 ~~~~-~~vlilGAGGAarAv~~aL~~~------g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~~~~dliI 195 (283)
T COG0169 123 DVTG-KRVLILGAGGAARAVAFALAEA------GAKRITVVNRTRERAEELADLFGELGAAVEAAALADLEGLEEADLLI 195 (283)
T ss_pred ccCC-CEEEEECCcHHHHHHHHHHHHc------CCCEEEEEeCCHHHHHHHHHHhhhcccccccccccccccccccCEEE
Confidence 3456 8999999999999999999998 85 7899999877777777665411000001111 12222699999
Q ss_pred EeccchHHHHH----HHHHHhcCCCCcEEEEe
Q 007951 184 LLISDAAQADN----YEKIFSCMKPNSILGLS 211 (583)
Q Consensus 184 Lavpd~a~~~V----l~eI~~~Lk~GaiL~~a 211 (583)
.+||....... +. ...++++.++.|+
T Consensus 196 NaTp~Gm~~~~~~~~~~--~~~l~~~~~v~D~ 225 (283)
T COG0169 196 NATPVGMAGPEGDSPVP--AELLPKGAIVYDV 225 (283)
T ss_pred ECCCCCCCCCCCCCCCc--HHhcCcCCEEEEe
Confidence 99998766532 12 3456677777655
No 248
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=95.32 E-value=0.11 Score=51.04 Aligned_cols=69 Identities=22% Similarity=0.274 Sum_probs=51.1
Q ss_pred EEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCcc-cHHHHHHcCceecCCCcC---CHhhhhccCCeEEEeccc
Q 007951 114 IGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARAAGFTEENGTLG---DIYETISGSDLVLLLISD 188 (583)
Q Consensus 114 IgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~-s~~~A~~~G~~~~d~t~~---d~~Eav~~ADIVILavpd 188 (583)
|.|+|. |.+|.+++..|.+. +++|.+..|+..+ ..+..+..|...-..... ++.++++++|.||++++.
T Consensus 1 I~V~GatG~~G~~v~~~L~~~------~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~ 74 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSA------GFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPP 74 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHT------TGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSC
T ss_pred CEEECCccHHHHHHHHHHHhC------CCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCc
Confidence 789995 99999999999998 8999888887533 334555677753211222 345689999999999993
No 249
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=95.31 E-value=0.072 Score=51.47 Aligned_cols=75 Identities=17% Similarity=0.240 Sum_probs=51.0
Q ss_pred hhcCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 107 ~l~gikkIgIIG~G-~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
.++| |++.|||-+ ..|..++.-|.+. |..|.+.... ..+..+.+++||+||.+
T Consensus 33 ~l~G-k~v~VvGrs~~VG~Pla~lL~~~------~atVt~~h~~-------------------T~~l~~~~~~ADIVVsa 86 (160)
T PF02882_consen 33 DLEG-KKVVVVGRSNIVGKPLAMLLLNK------GATVTICHSK-------------------TKNLQEITRRADIVVSA 86 (160)
T ss_dssp STTT--EEEEE-TTTTTHHHHHHHHHHT------T-EEEEE-TT-------------------SSSHHHHHTTSSEEEE-
T ss_pred CCCC-CEEEEECCcCCCChHHHHHHHhC------CCeEEeccCC-------------------CCcccceeeeccEEeee
Confidence 4889 999999988 5999999999998 8777664332 12566788999999999
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEec
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a~ 212 (583)
+.-... ++ ...+|+|++|+|+.
T Consensus 87 ~G~~~~---i~--~~~ik~gavVIDvG 108 (160)
T PF02882_consen 87 VGKPNL---IK--ADWIKPGAVVIDVG 108 (160)
T ss_dssp SSSTT----B---GGGS-TTEEEEE--
T ss_pred eccccc---cc--cccccCCcEEEecC
Confidence 985333 22 35689999888774
No 250
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=95.24 E-value=0.097 Score=55.78 Aligned_cols=115 Identities=11% Similarity=0.165 Sum_probs=79.8
Q ss_pred CEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCc--ccHHHHHHcCceecCCCcCCHhhhhcc--CCeEEEec
Q 007951 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--RSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLI 186 (583)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s--~s~~~A~~~G~~~~d~t~~d~~Eav~~--ADIVILav 186 (583)
.||-|-|. |.+|.-+++.+++. |-+|+.|..... .... ..|+.. ..++.|+.+. +|+.++++
T Consensus 30 t~v~vqGitg~~g~~h~~~~~~y------gt~iv~GV~Pgkgg~~v~---~~Gvpv----y~sv~ea~~~~~~D~avI~V 96 (317)
T PTZ00187 30 TKVICQGITGKQGTFHTEQAIEY------GTKMVGGVNPKKAGTTHL---KHGLPV----FATVKEAKKATGADASVIYV 96 (317)
T ss_pred CeEEEecCCChHHHHHHHHHHHh------CCcEEEEECCCCCCceEe---cCCccc----cCCHHHHhcccCCCEEEEec
Confidence 57888884 99999999999998 888888877543 2221 136664 5688888887 99999999
Q ss_pred cchHHHHHHHHHHhcCCCCcEEEEecCchhhh---hhcccccCCCCccEEEeccCCCchh
Q 007951 187 SDAAQADNYEKIFSCMKPNSILGLSHGFLLGH---LQSMGLDFPKNIGVIAVCPKGMGPS 243 (583)
Q Consensus 187 pd~a~~~Vl~eI~~~Lk~GaiL~~a~G~~i~~---ie~~~i~~p~dv~VI~v~PngPg~~ 243 (583)
|+....+.+.|.... .-..+|+++.||.... ++. .+.-..++. .+=||+||-.
T Consensus 97 Pa~~v~dai~Ea~~a-GI~~~ViiteGfpe~d~~~l~~-~~~~~~g~r--liGPNc~Gii 152 (317)
T PTZ00187 97 PPPHAASAIIEAIEA-EIPLVVCITEGIPQHDMVKVKH-ALLSQNKTR--LIGPNCPGII 152 (317)
T ss_pred CHHHHHHHHHHHHHc-CCCEEEEECCCCchhhHHHHHH-HHhhcCCCE--EECCCCceEE
Confidence 999999888874431 1234788999997542 211 111013444 4459998866
No 251
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.18 E-value=0.046 Score=57.45 Aligned_cols=75 Identities=16% Similarity=0.127 Sum_probs=57.5
Q ss_pred hhcCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 107 ~l~gikkIgIIG~G-~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
.++| |++.|||-| ..|..+|.-|.+. |..|.+.... ..++.+.+++||+||.+
T Consensus 154 ~l~G-k~vvVvGrs~~VG~Pla~lL~~~------gAtVtv~hs~-------------------t~~l~~~~~~ADIvV~A 207 (285)
T PRK14191 154 EIKG-KDVVIIGASNIVGKPLAMLMLNA------GASVSVCHIL-------------------TKDLSFYTQNADIVCVG 207 (285)
T ss_pred CCCC-CEEEEECCCchhHHHHHHHHHHC------CCEEEEEeCC-------------------cHHHHHHHHhCCEEEEe
Confidence 5788 999999999 9999999999887 8877765321 12456788999999999
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEec
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a~ 212 (583)
+..... +. .+++|+|++|++++
T Consensus 208 vG~p~~---i~--~~~vk~GavVIDvG 229 (285)
T PRK14191 208 VGKPDL---IK--ASMVKKGAVVVDIG 229 (285)
T ss_pred cCCCCc---CC--HHHcCCCcEEEEee
Confidence 975443 22 24569999988874
No 252
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=95.05 E-value=0.088 Score=52.24 Aligned_cols=102 Identities=15% Similarity=0.165 Sum_probs=59.1
Q ss_pred hhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecC---Cc---------------ccHHHHHH----cC
Q 007951 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK---GS---------------RSFAEARA----AG 161 (583)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~---~s---------------~s~~~A~~----~G 161 (583)
...|+. ++|+|||+|.+|..+|.+|..+ |+ ++++.+++ .+ +....++. ..
T Consensus 16 q~~L~~-~~V~IvG~GglGs~ia~~La~~------Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp 88 (200)
T TIGR02354 16 VQKLEQ-ATVAICGLGGLGSNVAINLARA------GIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINP 88 (200)
T ss_pred HHHHhC-CcEEEECcCHHHHHHHHHHHHc------CCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCC
Confidence 567788 9999999999999999999988 77 45555443 10 00000000 00
Q ss_pred -cee--cCCCc--CCHhhhhccCCeEEEeccchHHHH-HHHHHHhcCCCCcEEEEecCc
Q 007951 162 -FTE--ENGTL--GDIYETISGSDLVLLLISDAAQAD-NYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 162 -~~~--~d~t~--~d~~Eav~~ADIVILavpd~a~~~-Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
... ..... .+..+.++++|+||-|+-+..... +++++...++...+++ .+|+
T Consensus 89 ~~~i~~~~~~i~~~~~~~~~~~~DlVi~a~Dn~~~k~~l~~~~~~~~~~~~ii~-~~g~ 146 (200)
T TIGR02354 89 YTEIEAYDEKITEENIDKFFKDADIVCEAFDNAEAKAMLVNAVLEKYKDKYLIA-ASGL 146 (200)
T ss_pred CCEEEEeeeeCCHhHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHHcCCCcEEE-Eecc
Confidence 110 00001 123456788999999954434443 4556666665543444 5665
No 253
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.01 E-value=0.07 Score=57.99 Aligned_cols=76 Identities=16% Similarity=0.125 Sum_probs=46.6
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccchH
Q 007951 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (583)
Q Consensus 111 ikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~a 190 (583)
.++|.|||+|.+|.++|+.|++. |++|++.++.. ..... .+... +..........+++|+||.+.+...
T Consensus 3 ~~~i~iiGlG~~G~slA~~l~~~------G~~V~g~D~~~-~~~~~---~~~~~-~~~~~~~~~~~~~~dlvV~s~gi~~ 71 (418)
T PRK00683 3 LQRVVVLGLGVTGKSIARFLAQK------GVYVIGVDKSL-EALQS---CPYIH-ERYLENAEEFPEQVDLVVRSPGIKK 71 (418)
T ss_pred CCeEEEEEECHHHHHHHHHHHHC------CCEEEEEeCCc-cccch---hHHHh-hhhcCCcHHHhcCCCEEEECCCCCC
Confidence 38999999999999999999998 98876555432 22211 11110 0001123334478999999876554
Q ss_pred HHHHHHH
Q 007951 191 QADNYEK 197 (583)
Q Consensus 191 ~~~Vl~e 197 (583)
..+.+++
T Consensus 72 ~~~~l~~ 78 (418)
T PRK00683 72 EHPWVQA 78 (418)
T ss_pred CcHHHHH
Confidence 3444443
No 254
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=95.01 E-value=0.17 Score=54.79 Aligned_cols=92 Identities=18% Similarity=0.159 Sum_probs=56.6
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHc--CceecCCCcCCHh----hhhccCCeEEEe
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--GFTEENGTLGDIY----ETISGSDLVLLL 185 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~--G~~~~d~t~~d~~----Eav~~ADIVILa 185 (583)
++|.|||+|..|..+++.|.+. |+++++..+. ++..+...+. ++..-.+...+.. .-++++|.|+++
T Consensus 232 ~~iiIiG~G~~g~~l~~~L~~~------~~~v~vid~~-~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~ 304 (453)
T PRK09496 232 KRVMIVGGGNIGYYLAKLLEKE------GYSVKLIERD-PERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIAL 304 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCeEEEEECC-HHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEEC
Confidence 7899999999999999999998 8887666554 3344444443 3321011122222 245789999999
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEE
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGL 210 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~ 210 (583)
+++...--....++..+.+..++.-
T Consensus 305 ~~~~~~n~~~~~~~~~~~~~~ii~~ 329 (453)
T PRK09496 305 TNDDEANILSSLLAKRLGAKKVIAL 329 (453)
T ss_pred CCCcHHHHHHHHHHHHhCCCeEEEE
Confidence 9976543333334444444445443
No 255
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=94.98 E-value=0.15 Score=50.75 Aligned_cols=77 Identities=19% Similarity=0.183 Sum_probs=52.5
Q ss_pred hhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccH-HHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF-AEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 107 ~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~-~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
.++| ++|.|||.|.+|..-++.|.+. |.+|+|......+.+ +.+.+..+....+. .. .+.+.++|+||.+
T Consensus 6 ~l~g-k~vlVvGgG~va~rk~~~Ll~~------ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~-~~-~~dl~~~~lVi~a 76 (205)
T TIGR01470 6 NLEG-RAVLVVGGGDVALRKARLLLKA------GAQLRVIAEELESELTLLAEQGGITWLARC-FD-ADILEGAFLVIAA 76 (205)
T ss_pred EcCC-CeEEEECcCHHHHHHHHHHHHC------CCEEEEEcCCCCHHHHHHHHcCCEEEEeCC-CC-HHHhCCcEEEEEC
Confidence 3789 9999999999999999999998 888777655433223 33333233321111 12 3457899999999
Q ss_pred ccchHHH
Q 007951 186 ISDAAQA 192 (583)
Q Consensus 186 vpd~a~~ 192 (583)
+.|....
T Consensus 77 t~d~~ln 83 (205)
T TIGR01470 77 TDDEELN 83 (205)
T ss_pred CCCHHHH
Confidence 9987543
No 256
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=94.97 E-value=0.14 Score=50.71 Aligned_cols=88 Identities=15% Similarity=0.121 Sum_probs=53.6
Q ss_pred hhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCC-------------------cccHHHHHHc----
Q 007951 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG-------------------SRSFAEARAA---- 160 (583)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~-------------------s~s~~~A~~~---- 160 (583)
.+-|++ ++|.|||+|.+|..++++|... |+ ++.+.++.. .+....+.+.
T Consensus 16 q~kl~~-~~VlviG~GglGs~ia~~La~~------Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n 88 (202)
T TIGR02356 16 QQRLLN-SHVLIIGAGGLGSPAALYLAGA------GVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELN 88 (202)
T ss_pred HHHhcC-CCEEEECCCHHHHHHHHHHHHc------CCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhC
Confidence 467788 9999999999999999999988 76 555554431 1111111111
Q ss_pred -Ccee--cCCCcC--CHhhhhccCCeEEEeccchHHHHHHHHHH
Q 007951 161 -GFTE--ENGTLG--DIYETISGSDLVLLLISDAAQADNYEKIF 199 (583)
Q Consensus 161 -G~~~--~d~t~~--d~~Eav~~ADIVILavpd~a~~~Vl~eI~ 199 (583)
.+.. .+.... +..+.++++|+||.++........+.+..
T Consensus 89 p~v~i~~~~~~i~~~~~~~~~~~~D~Vi~~~d~~~~r~~l~~~~ 132 (202)
T TIGR02356 89 SDIQVTALKERVTAENLELLINNVDLVLDCTDNFATRYLINDAC 132 (202)
T ss_pred CCCEEEEehhcCCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHH
Confidence 1110 001111 23457889999999986655555666543
No 257
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=94.94 E-value=0.11 Score=55.64 Aligned_cols=77 Identities=18% Similarity=0.252 Sum_probs=49.1
Q ss_pred EEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCccc-HHHHHHcCceec-----------CC---CcCCHhhhhcc
Q 007951 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS-FAEARAAGFTEE-----------NG---TLGDIYETISG 178 (583)
Q Consensus 114 IgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s-~~~A~~~G~~~~-----------d~---t~~d~~Eav~~ 178 (583)
|||+|+|.+|..+++.+... .+++++...+.+... ...|...|+... +. ...+++++..+
T Consensus 1 VaInG~GrIGr~varav~~~-----~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~ 75 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQ-----DDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEK 75 (333)
T ss_pred CEEECCcHHHHHHHHHHhhC-----CCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhc
Confidence 68999999999999998754 156665445543321 134443332110 00 02467888899
Q ss_pred CCeEEEeccchHHHHHH
Q 007951 179 SDLVLLLISDAAQADNY 195 (583)
Q Consensus 179 ADIVILavpd~a~~~Vl 195 (583)
+|+|+.|+|......-.
T Consensus 76 vDiVve~Tp~~~~~~na 92 (333)
T TIGR01546 76 VDIVVDATPGGIGAKNK 92 (333)
T ss_pred CCEEEECCCCCCChhhH
Confidence 99999999987665433
No 258
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=94.92 E-value=0.084 Score=59.59 Aligned_cols=95 Identities=15% Similarity=0.112 Sum_probs=65.2
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceec--CCC-------------cCCH-
Q 007951 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--NGT-------------LGDI- 172 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~--d~t-------------~~d~- 172 (583)
.+ .||.|||.|.+|..-++.++.. |.+|++. +.++...+.+++.|.... +.. ..+.
T Consensus 164 pg-~kVlViGaG~iGL~Ai~~Ak~l------GA~V~a~-D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~ 235 (509)
T PRK09424 164 PP-AKVLVIGAGVAGLAAIGAAGSL------GAIVRAF-DTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFI 235 (509)
T ss_pred CC-CEEEEECCcHHHHHHHHHHHHC------CCEEEEE-eCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHH
Confidence 45 8999999999999999999887 8876554 445566889999987510 100 0010
Q ss_pred -------hhhhccCCeEEEeccchH--HHHHH-HHHHhcCCCCcEEEEe
Q 007951 173 -------YETISGSDLVLLLISDAA--QADNY-EKIFSCMKPNSILGLS 211 (583)
Q Consensus 173 -------~Eav~~ADIVILavpd~a--~~~Vl-~eI~~~Lk~GaiL~~a 211 (583)
.+.++++|+||-++.-.. .+.++ ++....+|+|.+|++.
T Consensus 236 ~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdv 284 (509)
T PRK09424 236 KAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDL 284 (509)
T ss_pred HHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEE
Confidence 122357999999886322 23443 7777889999988766
No 259
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.92 E-value=0.07 Score=55.92 Aligned_cols=75 Identities=17% Similarity=0.208 Sum_probs=57.3
Q ss_pred hhcCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 107 ~l~gikkIgIIG~G-~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
.++| +++.|||.+ ..|..++.-|... |..|.+..+. ..++.+.+++||+||.+
T Consensus 149 ~l~G-k~V~ViGrs~~vGrpla~lL~~~------~atVtv~hs~-------------------t~~L~~~~~~ADIvI~A 202 (279)
T PRK14178 149 SIAG-KRAVVVGRSIDVGRPMAALLLNA------DATVTICHSK-------------------TENLKAELRQADILVSA 202 (279)
T ss_pred CCCC-CEEEEECCCccccHHHHHHHHhC------CCeeEEEecC-------------------hhHHHHHHhhCCEEEEC
Confidence 5789 999999999 9999999999877 7777766532 12467888999999999
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEec
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a~ 212 (583)
++-. .++. ...+|+|++|+|++
T Consensus 203 vgk~---~lv~--~~~vk~GavVIDVg 224 (279)
T PRK14178 203 AGKA---GFIT--PDMVKPGATVIDVG 224 (279)
T ss_pred CCcc---cccC--HHHcCCCcEEEEee
Confidence 9733 2333 22369999998874
No 260
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=94.90 E-value=0.12 Score=59.37 Aligned_cols=75 Identities=12% Similarity=0.222 Sum_probs=54.9
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHh----hhhccCCeEEEecc
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY----ETISGSDLVLLLIS 187 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~----Eav~~ADIVILavp 187 (583)
..|-|+|+|.+|..+++.|++. |+++++- +.+++..+.+++.|...--+...+.+ .-+++||.|+++++
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~------g~~vvvI-D~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~ 473 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMAN------KMRITVL-ERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCN 473 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhC------CCCEEEE-ECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeC
Confidence 4789999999999999999988 8887654 45566778888888643211122221 13678999999999
Q ss_pred chHHHH
Q 007951 188 DAAQAD 193 (583)
Q Consensus 188 d~a~~~ 193 (583)
|.....
T Consensus 474 d~~~n~ 479 (601)
T PRK03659 474 EPEDTM 479 (601)
T ss_pred CHHHHH
Confidence 976653
No 261
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=94.87 E-value=0.053 Score=56.70 Aligned_cols=77 Identities=16% Similarity=0.191 Sum_probs=51.2
Q ss_pred hcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCc---ccHHHHHHcCceecC-CCcCCH------hhhh
Q 007951 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGS---RSFAEARAAGFTEEN-GTLGDI------YETI 176 (583)
Q Consensus 108 l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s---~s~~~A~~~G~~~~d-~t~~d~------~Eav 176 (583)
+++ +++.|||.|-.+.|++..|... |. ++.|.+|..+ +..+.+...+..... -...+. .+.+
T Consensus 122 ~~~-k~vlvlGaGGaarAi~~~l~~~------g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~~~~~~~~~l~~~~ 194 (288)
T PRK12749 122 IKG-KTMVLLGAGGASTAIGAQGAIE------GLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEAL 194 (288)
T ss_pred cCC-CEEEEECCcHHHHHHHHHHHHC------CCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEEechhhhhhhhhhc
Confidence 567 8999999999999999999887 76 7888888742 444444433210000 001122 2356
Q ss_pred ccCCeEEEeccchHH
Q 007951 177 SGSDLVLLLISDAAQ 191 (583)
Q Consensus 177 ~~ADIVILavpd~a~ 191 (583)
.++|+||.+||....
T Consensus 195 ~~aDivINaTp~Gm~ 209 (288)
T PRK12749 195 ASADILTNGTKVGMK 209 (288)
T ss_pred ccCCEEEECCCCCCC
Confidence 789999999997654
No 262
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=94.81 E-value=0.13 Score=54.15 Aligned_cols=115 Identities=15% Similarity=0.200 Sum_probs=77.5
Q ss_pred CEEEEEc-cchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhcc--CCeEEEeccc
Q 007951 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLISD 188 (583)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~--ADIVILavpd 188 (583)
.+|.|.| .|.+|..+-.+|+.. |.+++++...+ +. ...-.|+.. ..++.|+-+. .|++++++|+
T Consensus 7 ~~~~~~g~~~~~~~~~~~~~~~~------g~~~v~~V~p~-~~--~~~v~G~~~----y~sv~dlp~~~~~Dlavi~vpa 73 (286)
T TIGR01019 7 TKVIVQGITGSQGSFHTEQMLAY------GTNIVGGVTPG-KG--GTTVLGLPV----FDSVKEAVEETGANASVIFVPA 73 (286)
T ss_pred CcEEEecCCcHHHHHHHHHHHhC------CCCEEEEECCC-CC--cceecCeec----cCCHHHHhhccCCCEEEEecCH
Confidence 6789999 689999999999988 87766665543 11 112357764 5677777665 6999999999
Q ss_pred hHHHHHHHHHHhcCCCCcEEEEecCchhhhhhcccc--cCCCCccEEEeccCCCchh
Q 007951 189 AAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGL--DFPKNIGVIAVCPKGMGPS 243 (583)
Q Consensus 189 ~a~~~Vl~eI~~~Lk~GaiL~~a~G~~i~~ie~~~i--~~p~dv~VI~v~PngPg~~ 243 (583)
....+++++... ..-..+|++++||.... +.... .-..++.++. ||+.|-.
T Consensus 74 ~~v~~~l~e~~~-~Gvk~avIis~Gf~e~~-~~~l~~~a~~~girilG--PNc~Gii 126 (286)
T TIGR01019 74 PFAADAIFEAID-AGIELIVCITEGIPVHD-MLKVKRYMEESGTRLIG--PNCPGII 126 (286)
T ss_pred HHHHHHHHHHHH-CCCCEEEEECCCCCHHH-HHHHHHHHHHcCCEEEC--CCCceEE
Confidence 999999988554 22345788999996431 11001 1122445544 8888776
No 263
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=94.68 E-value=0.089 Score=52.98 Aligned_cols=79 Identities=16% Similarity=0.013 Sum_probs=48.8
Q ss_pred hhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCc----------ccHHHHHHcCceecC-C-CcCCHh
Q 007951 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----------RSFAEARAAGFTEEN-G-TLGDIY 173 (583)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s----------~s~~~A~~~G~~~~d-~-t~~d~~ 173 (583)
..++| ++|+|.|+|+.|...|+-|.+. |..++...+.+. +..+...+.+-...- . ...+.+
T Consensus 19 ~~l~g-~~vaIqGfGnVG~~~a~~L~~~------G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~ 91 (217)
T cd05211 19 DSLEG-LTVAVQGLGNVGWGLAKKLAEE------GGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGE 91 (217)
T ss_pred CCcCC-CEEEEECCCHHHHHHHHHHHHc------CCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcc
Confidence 45788 9999999999999999999988 886555445444 334444433322100 0 001112
Q ss_pred hh-hccCCeEEEeccchHH
Q 007951 174 ET-ISGSDLVLLLISDAAQ 191 (583)
Q Consensus 174 Ea-v~~ADIVILavpd~a~ 191 (583)
+. -.+||+++-|.+...+
T Consensus 92 ~l~~~~~DVlipaA~~~~i 110 (217)
T cd05211 92 AILGLDVDIFAPCALGNVI 110 (217)
T ss_pred cceeccccEEeeccccCcc
Confidence 22 1378888888776533
No 264
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=94.66 E-value=0.098 Score=55.98 Aligned_cols=78 Identities=22% Similarity=0.170 Sum_probs=49.9
Q ss_pred EEEEccchhHHHHHHHHHHhhhhhcCC-c-eEEEEecCCcccHHHHHH-c--CceecCCCcCC---HhhhhccCCeEEEe
Q 007951 114 IGVIGWGSQGPAQAQNLRDSLAEAKSD-I-VVKVGLRKGSRSFAEARA-A--GFTEENGTLGD---IYETISGSDLVLLL 185 (583)
Q Consensus 114 IgIIG~G~mG~A~A~nLrdsl~~~g~G-~-~ViVg~r~~s~s~~~A~~-~--G~~~~d~t~~d---~~Eav~~ADIVILa 185 (583)
|.|||.|.+|..++..|.+. + . +|+++.|+..+..+.+.+ . .+....-.+.+ +.++++++|+||.|
T Consensus 1 IlvlG~G~vG~~~~~~L~~~------~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~ 74 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARR------GPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINC 74 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCT------TCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-
T ss_pred CEEEcCcHHHHHHHHHHhcC------CCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEEC
Confidence 78999999999999999987 4 4 788888875543344332 1 22110000223 45688999999999
Q ss_pred ccchHHHHHHHH
Q 007951 186 ISDAAQADNYEK 197 (583)
Q Consensus 186 vpd~a~~~Vl~e 197 (583)
+||.....+++.
T Consensus 75 ~gp~~~~~v~~~ 86 (386)
T PF03435_consen 75 AGPFFGEPVARA 86 (386)
T ss_dssp SSGGGHHHHHHH
T ss_pred CccchhHHHHHH
Confidence 999866666653
No 265
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.61 E-value=0.094 Score=55.50 Aligned_cols=68 Identities=19% Similarity=0.184 Sum_probs=41.8
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc--eEEEEecCCcccHHHHH----HcCceec-CCC-cCCHhhhhccCCeEE
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEAR----AAGFTEE-NGT-LGDIYETISGSDLVL 183 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~--~ViVg~r~~s~s~~~A~----~~G~~~~-d~t-~~d~~Eav~~ADIVI 183 (583)
+||+|||.|.+|.++|..|... |+ ++++.+...++....+. ...+... .-. ..+.+ .+++||+||
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~------~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~-~~~~adivv 76 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAK------GLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYS-VTANSKVVI 76 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHH-HhCCCCEEE
Confidence 6999999999999999999877 65 56555544332222222 2211100 001 24555 489999999
Q ss_pred Eec
Q 007951 184 LLI 186 (583)
Q Consensus 184 Lav 186 (583)
++.
T Consensus 77 ita 79 (312)
T cd05293 77 VTA 79 (312)
T ss_pred ECC
Confidence 943
No 266
>PTZ00325 malate dehydrogenase; Provisional
Probab=94.55 E-value=0.06 Score=57.31 Aligned_cols=78 Identities=17% Similarity=0.128 Sum_probs=46.0
Q ss_pred hhhhcCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCc--ccHHHHHHc-CceecCCCc-CCHhhhhccC
Q 007951 105 PDAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--RSFAEARAA-GFTEENGTL-GDIYETISGS 179 (583)
Q Consensus 105 ~~~l~gikkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s--~s~~~A~~~-G~~~~d~t~-~d~~Eav~~A 179 (583)
|.++|. +||+|||. |.+|.+++..|... +...++++.+.... ..++..... .+...+.+. .+..++++++
T Consensus 3 ~~~~~~-~KI~IiGaaG~VGs~~a~~l~~~----~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~ga 77 (321)
T PTZ00325 3 PSALKM-FKVAVLGAAGGIGQPLSLLLKQN----PHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGA 77 (321)
T ss_pred CcCCCC-CEEEEECCCCHHHHHHHHHHhcC----CCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCC
Confidence 467788 99999999 99999999999865 11235555554211 111211101 112111111 2226789999
Q ss_pred CeEEEecc
Q 007951 180 DLVLLLIS 187 (583)
Q Consensus 180 DIVILavp 187 (583)
|+||++.-
T Consensus 78 DvVVitaG 85 (321)
T PTZ00325 78 DLVLICAG 85 (321)
T ss_pred CEEEECCC
Confidence 99998654
No 267
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=94.52 E-value=0.18 Score=57.04 Aligned_cols=73 Identities=19% Similarity=0.254 Sum_probs=52.4
Q ss_pred EEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHh----hhhccCCeEEEeccc
Q 007951 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY----ETISGSDLVLLLISD 188 (583)
Q Consensus 113 kIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~----Eav~~ADIVILavpd 188 (583)
.|-|+|+|.+|..+++.|++. |+++++-+ .+++..+.+++.|...-.+...+.+ .-++++|.|++++++
T Consensus 419 hiiI~G~G~~G~~la~~L~~~------g~~vvvId-~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~ 491 (558)
T PRK10669 419 HALLVGYGRVGSLLGEKLLAA------GIPLVVIE-TSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPN 491 (558)
T ss_pred CEEEECCChHHHHHHHHHHHC------CCCEEEEE-CCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCC
Confidence 688999999999999999998 88876654 4555677778888643211122321 125689999999998
Q ss_pred hHHH
Q 007951 189 AAQA 192 (583)
Q Consensus 189 ~a~~ 192 (583)
+...
T Consensus 492 ~~~~ 495 (558)
T PRK10669 492 GYEA 495 (558)
T ss_pred hHHH
Confidence 7554
No 268
>PRK05442 malate dehydrogenase; Provisional
Probab=94.49 E-value=0.32 Score=51.87 Aligned_cols=68 Identities=16% Similarity=0.171 Sum_probs=41.7
Q ss_pred CCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCc-------eEEEEecCCc------ccHHHHHHc-----CceecCCCcC
Q 007951 110 GINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKGS------RSFAEARAA-----GFTEENGTLG 170 (583)
Q Consensus 110 gikkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~-------~ViVg~r~~s------~s~~~A~~~-----G~~~~d~t~~ 170 (583)
...||+|||. |.+|.++|..|... ++ ++++.+.... ..++..... .... ..
T Consensus 3 ~~~KV~IiGaaG~VG~~~a~~l~~~------~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i----~~ 72 (326)
T PRK05442 3 APVRVAVTGAAGQIGYSLLFRIASG------DMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVI----TD 72 (326)
T ss_pred CCcEEEEECCCcHHHHHHHHHHHhh------hhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEE----ec
Confidence 3479999998 99999999988765 33 4544443211 122222211 1111 23
Q ss_pred CHhhhhccCCeEEEecc
Q 007951 171 DIYETISGSDLVLLLIS 187 (583)
Q Consensus 171 d~~Eav~~ADIVILavp 187 (583)
+..+.+++||+||++--
T Consensus 73 ~~y~~~~daDiVVitaG 89 (326)
T PRK05442 73 DPNVAFKDADVALLVGA 89 (326)
T ss_pred ChHHHhCCCCEEEEeCC
Confidence 45578899999999643
No 269
>PLN02602 lactate dehydrogenase
Probab=94.46 E-value=0.25 Score=53.30 Aligned_cols=67 Identities=25% Similarity=0.334 Sum_probs=41.0
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc--eEEEEecCCcccHHHHH----HcCceecCCCc---CCHhhhhccCCeE
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEAR----AAGFTEENGTL---GDIYETISGSDLV 182 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~--~ViVg~r~~s~s~~~A~----~~G~~~~d~t~---~d~~Eav~~ADIV 182 (583)
+||+|||.|.+|.++|..|... ++ ++++.+...++....+. ...+.. ...+ .+. +.+++||+|
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~------~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~-~~~i~~~~dy-~~~~daDiV 109 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQ------DLADELALVDVNPDKLRGEMLDLQHAAAFLP-RTKILASTDY-AVTAGSDLC 109 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCCEEEEEeCCCchhhHHHHHHHhhhhcCC-CCEEEeCCCH-HHhCCCCEE
Confidence 5999999999999999999876 65 55555543322222222 111110 0001 244 448999999
Q ss_pred EEec
Q 007951 183 LLLI 186 (583)
Q Consensus 183 ILav 186 (583)
|++.
T Consensus 110 VitA 113 (350)
T PLN02602 110 IVTA 113 (350)
T ss_pred EECC
Confidence 9973
No 270
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.41 E-value=0.12 Score=54.90 Aligned_cols=65 Identities=14% Similarity=0.143 Sum_probs=40.8
Q ss_pred CEEEEEcc-chhHHHHHHHHHHhhhhhcCCc-------eEEEEecCCcc------cHHHHHHc-----CceecCCCcCCH
Q 007951 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKGSR------SFAEARAA-----GFTEENGTLGDI 172 (583)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~-------~ViVg~r~~s~------s~~~A~~~-----G~~~~d~t~~d~ 172 (583)
+||+|||. |.+|.++|..|... |+ ++++.+..... .++..... .... ..+.
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~------~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i----~~~~ 72 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASG------EMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVI----TDDP 72 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhc------cccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEE----ecCc
Confidence 68999999 99999999999876 54 45554442211 12222111 1111 1344
Q ss_pred hhhhccCCeEEEec
Q 007951 173 YETISGSDLVLLLI 186 (583)
Q Consensus 173 ~Eav~~ADIVILav 186 (583)
.+.+++||+||++-
T Consensus 73 ~~~~~daDivvita 86 (322)
T cd01338 73 NVAFKDADWALLVG 86 (322)
T ss_pred HHHhCCCCEEEEeC
Confidence 57889999999964
No 271
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.36 E-value=0.13 Score=54.10 Aligned_cols=75 Identities=13% Similarity=0.135 Sum_probs=57.0
Q ss_pred hhcCCCEEEEEccch-hHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 107 AFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 107 ~l~gikkIgIIG~G~-mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
.++| +++.|||.+. .|..++.-|... |..|.+.... +.++.+.+++||+||.+
T Consensus 161 ~l~G-k~vvViGrs~iVGkPla~lL~~~------~atVtv~hs~-------------------T~~l~~~~~~ADIvv~A 214 (287)
T PRK14176 161 DIEG-KNAVIVGHSNVVGKPMAAMLLNR------NATVSVCHVF-------------------TDDLKKYTLDADILVVA 214 (287)
T ss_pred CCCC-CEEEEECCCcccHHHHHHHHHHC------CCEEEEEecc-------------------CCCHHHHHhhCCEEEEc
Confidence 5789 9999999998 999999999887 7777665421 23567788999999997
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEec
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a~ 212 (583)
+--.. .+. ...+|+|++|+|++
T Consensus 215 vG~p~---~i~--~~~vk~gavVIDvG 236 (287)
T PRK14176 215 TGVKH---LIK--ADMVKEGAVIFDVG 236 (287)
T ss_pred cCCcc---ccC--HHHcCCCcEEEEec
Confidence 66332 222 23689999988863
No 272
>PF10728 DUF2520: Domain of unknown function (DUF2520); InterPro: IPR018931 This presumed domain is found C-terminal to a Rossmann-like domain suggesting that these proteins are oxidoreductases. ; PDB: 3D1L_A 2I76_A 3DFU_A.
Probab=94.33 E-value=0.35 Score=45.28 Aligned_cols=86 Identities=15% Similarity=0.189 Sum_probs=59.3
Q ss_pred EeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhH-hhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 007951 263 FAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGIL-LGAVHGIVESLFRRFTENGMNEDLAYKNTVEC 341 (583)
Q Consensus 263 iAv~qd~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvL-sG~~pAlieAl~d~~Ve~Gl~~e~A~~~~~q~ 341 (583)
+++.. +.++++.++.++..+|.. ++. ..+..-.+||..+++ |+.+.+++....+.+.++|+++++|++.-.--
T Consensus 4 ~~iEg--d~~~~~~l~~l~~~lg~~-~~~---i~~~~r~~yHaAav~asNf~~~L~~~a~~ll~~~gi~~~~a~~~L~PL 77 (132)
T PF10728_consen 4 FAIEG--DEEALEVLQELAKELGGR-PFE---IDSEQRALYHAAAVFASNFLVALYALAAELLEQAGIDFEEALEALLPL 77 (132)
T ss_dssp EEEEE--SHHHHHHHHHHHHHTTSE-EEE-----GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SHHH--HHHHHH
T ss_pred EEEec--CHHHHHHHHHHHHHhCCc-eEE---eCHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCCchhHHHHHHHH
Confidence 35555 788999999999999985 222 233344589999986 99999999999999999999999988754444
Q ss_pred HHHHHHHHHHHhcH
Q 007951 342 ITGIISKIISTQGM 355 (583)
Q Consensus 342 l~Glia~li~e~G~ 355 (583)
+.+ ..+-+.+.|.
T Consensus 78 i~~-t~~n~~~~g~ 90 (132)
T PF10728_consen 78 IRE-TLENILQLGP 90 (132)
T ss_dssp HHH-HHHHHHHS-H
T ss_pred HHH-HHHHHHhcCc
Confidence 433 3334444444
No 273
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.29 E-value=0.12 Score=54.17 Aligned_cols=74 Identities=16% Similarity=0.169 Sum_probs=56.9
Q ss_pred hhcCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 107 ~l~gikkIgIIG~G-~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
.++| |++.|||-+ ..|..++.-|.+. |..|.+... + +.+..+.+++||+||.+
T Consensus 154 ~l~G-k~vvViGrS~~VG~Pla~lL~~~------~AtVti~hs---~----------------T~~l~~~~~~ADIvV~A 207 (281)
T PRK14183 154 DVKG-KDVCVVGASNIVGKPMAALLLNA------NATVDICHI---F----------------TKDLKAHTKKADIVIVG 207 (281)
T ss_pred CCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCC---C----------------CcCHHHHHhhCCEEEEe
Confidence 5788 999999999 8999999999887 777765532 1 12456788999999999
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
+.-... +. .+++|+|++|+++
T Consensus 208 vGkp~~---i~--~~~vk~gavvIDv 228 (281)
T PRK14183 208 VGKPNL---IT--EDMVKEGAIVIDI 228 (281)
T ss_pred cCcccc---cC--HHHcCCCcEEEEe
Confidence 985433 32 3567899998886
No 274
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=94.26 E-value=0.11 Score=54.12 Aligned_cols=75 Identities=17% Similarity=0.153 Sum_probs=49.4
Q ss_pred hcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCce-EEEEecCC---cccHHHHHHc---C----ceecCCCcC---CHh
Q 007951 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKG---SRSFAEARAA---G----FTEENGTLG---DIY 173 (583)
Q Consensus 108 l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~-ViVg~r~~---s~s~~~A~~~---G----~~~~d~t~~---d~~ 173 (583)
+++ +++.|+|.|-+|.+++..|.+. |.+ |.+.+|.. ++..+.+.+. + +...+ .. +..
T Consensus 124 ~~~-k~vlI~GAGGagrAia~~La~~------G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d--~~~~~~~~ 194 (289)
T PRK12548 124 VKG-KKLTVIGAGGAATAIQVQCALD------GAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYD--LNDTEKLK 194 (289)
T ss_pred cCC-CEEEEECCcHHHHHHHHHHHHC------CCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEec--hhhhhHHH
Confidence 567 8999999999999999999988 885 88888764 3333333322 1 11000 11 123
Q ss_pred hhhccCCeEEEeccchHH
Q 007951 174 ETISGSDLVLLLISDAAQ 191 (583)
Q Consensus 174 Eav~~ADIVILavpd~a~ 191 (583)
+.++++|+||.+||....
T Consensus 195 ~~~~~~DilINaTp~Gm~ 212 (289)
T PRK12548 195 AEIASSDILVNATLVGMK 212 (289)
T ss_pred hhhccCCEEEEeCCCCCC
Confidence 455678999999987643
No 275
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=94.24 E-value=0.21 Score=52.57 Aligned_cols=67 Identities=25% Similarity=0.351 Sum_probs=41.9
Q ss_pred CEEEEEcc-chhHHHHHHHHHHhhhhhcCCc--eEEEEecCC--cccHHHHH-------HcCc--eecCCCcCCHhhhhc
Q 007951 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKG--SRSFAEAR-------AAGF--TEENGTLGDIYETIS 177 (583)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~--~ViVg~r~~--s~s~~~A~-------~~G~--~~~d~t~~d~~Eav~ 177 (583)
+||+|||. |..|..++..|... |+ +|++.++.. ++....+. ..+. .. . ...+ .+.++
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~------g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i-~-~~~d-~~~l~ 71 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKE------DVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEI-K-ISSD-LSDVA 71 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhC------CCCCEEEEEECcccccccccccchhhhchhccCCCcEE-E-ECCC-HHHhC
Confidence 68999998 99999999999887 65 466656532 11111110 1111 11 0 0124 45699
Q ss_pred cCCeEEEecc
Q 007951 178 GSDLVLLLIS 187 (583)
Q Consensus 178 ~ADIVILavp 187 (583)
+||+||++..
T Consensus 72 ~aDiViitag 81 (309)
T cd05294 72 GSDIVIITAG 81 (309)
T ss_pred CCCEEEEecC
Confidence 9999999875
No 276
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.19 E-value=0.12 Score=56.81 Aligned_cols=76 Identities=16% Similarity=0.180 Sum_probs=52.9
Q ss_pred cccchhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCccc----HHHHHHcCceecCCCcCCHhhhh
Q 007951 101 FNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS----FAEARAAGFTEENGTLGDIYETI 176 (583)
Q Consensus 101 f~~~~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s----~~~A~~~G~~~~d~t~~d~~Eav 176 (583)
|....+.+.+ ++|+|+|+|..|.++|+-|++. |+.|.+.++..... .+...+.|+.... -....+.+
T Consensus 5 ~~~~~~~~~~-~~i~v~G~G~sG~a~a~~L~~~------G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~--~~~~~~~~ 75 (458)
T PRK01710 5 FNEFKKFIKN-KKVAVVGIGVSNIPLIKFLVKL------GAKVTAFDKKSEEELGEVSNELKELGVKLVL--GENYLDKL 75 (458)
T ss_pred HHHHhhhhcC-CeEEEEcccHHHHHHHHHHHHC------CCEEEEECCCCCccchHHHHHHHhCCCEEEe--CCCChHHh
Confidence 5545577888 9999999999999999999998 99887766543211 1335566875311 11224556
Q ss_pred ccCCeEEEe
Q 007951 177 SGSDLVLLL 185 (583)
Q Consensus 177 ~~ADIVILa 185 (583)
.++|+||+.
T Consensus 76 ~~~dlVV~S 84 (458)
T PRK01710 76 DGFDVIFKT 84 (458)
T ss_pred ccCCEEEEC
Confidence 789999885
No 277
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=94.14 E-value=0.14 Score=56.37 Aligned_cols=71 Identities=23% Similarity=0.169 Sum_probs=49.5
Q ss_pred hhhhcCCCEEEEEccchhHHH-HHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEE
Q 007951 105 PDAFNGINQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (583)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~A-~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVI 183 (583)
++.+++ ++|.|||+|..|.+ +|+-|++. |++|.+.+.......+...+.|+... .....+.+.++|+||
T Consensus 2 ~~~~~~-~~v~viG~G~sG~s~~a~~L~~~------G~~V~~~D~~~~~~~~~l~~~gi~~~---~~~~~~~~~~~d~vv 71 (461)
T PRK00421 2 PELRRI-KRIHFVGIGGIGMSGLAEVLLNL------GYKVSGSDLKESAVTQRLLELGAIIF---IGHDAENIKDADVVV 71 (461)
T ss_pred CCcCCC-CEEEEEEEchhhHHHHHHHHHhC------CCeEEEECCCCChHHHHHHHCCCEEe---CCCCHHHCCCCCEEE
Confidence 355677 89999999999999 79999998 99987766543332333445677641 122345567899988
Q ss_pred Ee
Q 007951 184 LL 185 (583)
Q Consensus 184 La 185 (583)
+.
T Consensus 72 ~s 73 (461)
T PRK00421 72 YS 73 (461)
T ss_pred EC
Confidence 74
No 278
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=94.12 E-value=0.22 Score=57.40 Aligned_cols=76 Identities=14% Similarity=0.192 Sum_probs=55.0
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHh----hhhccCCeEEEecc
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY----ETISGSDLVLLLIS 187 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~----Eav~~ADIVILavp 187 (583)
+.|-|+|+|.+|..+++.|++. |+++++- +.+++..+.+++.|...--+...+.+ .-+++||+|+++++
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~------g~~vvvI-D~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~ 473 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSS------GVKMTVL-DHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAID 473 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhC------CCCEEEE-ECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeC
Confidence 5789999999999999999998 8887654 55566677788888753211122321 23568999999999
Q ss_pred chHHHHH
Q 007951 188 DAAQADN 194 (583)
Q Consensus 188 d~a~~~V 194 (583)
|......
T Consensus 474 d~~~n~~ 480 (621)
T PRK03562 474 DPQTSLQ 480 (621)
T ss_pred CHHHHHH
Confidence 8766543
No 279
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=94.11 E-value=0.055 Score=51.69 Aligned_cols=99 Identities=17% Similarity=0.132 Sum_probs=61.1
Q ss_pred hhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCC------------------
Q 007951 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENG------------------ 167 (583)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~------------------ 167 (583)
.-+.. .+|.|+|.|+.|..-+.-+..- |.++++.+.. ....+.....+...-.-
T Consensus 16 ~~~~p-~~vvv~G~G~vg~gA~~~~~~l------Ga~v~~~d~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 87 (168)
T PF01262_consen 16 GGVPP-AKVVVTGAGRVGQGAAEIAKGL------GAEVVVPDER-PERLRQLESLGAYFIEVDYEDHLERKDFDKADYYE 87 (168)
T ss_dssp TEE-T--EEEEESTSHHHHHHHHHHHHT------T-EEEEEESS-HHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHH
T ss_pred CCCCC-eEEEEECCCHHHHHHHHHHhHC------CCEEEeccCC-HHHHHhhhcccCceEEEcccccccccccchhhhhH
Confidence 33444 7999999999999988888876 9987766554 33344444444421000
Q ss_pred ----CcCCHhhhhccCCeEEE--eccchHHHHHHH-HHHhcCCCCcEEEEec
Q 007951 168 ----TLGDIYETISGSDLVLL--LISDAAQADNYE-KIFSCMKPNSILGLSH 212 (583)
Q Consensus 168 ----t~~d~~Eav~~ADIVIL--avpd~a~~~Vl~-eI~~~Lk~GaiL~~a~ 212 (583)
......+.++.+|+||. ..|+...+.++. +-...|++|.+|+|.+
T Consensus 88 ~~~~~~~~f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis 139 (168)
T PF01262_consen 88 HPESYESNFAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDIS 139 (168)
T ss_dssp HCCHHHHHHHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETT
T ss_pred HHHHhHHHHHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEE
Confidence 00124467889999996 345666666664 5677899999999873
No 280
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=94.11 E-value=0.2 Score=53.97 Aligned_cols=86 Identities=12% Similarity=0.052 Sum_probs=60.2
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEE-ecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEecc---
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVG-LRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS--- 187 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg-~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavp--- 187 (583)
.+|||||+ .+|..++..+++. . .+++++.. ++..++..+.|.+.|+.. ..+.+|++.+.|++++++|
T Consensus 4 ~rVgViG~-~~G~~h~~al~~~-~---~~~eLvaV~d~~~erA~~~A~~~gi~~----y~~~eell~d~Di~~V~ipt~~ 74 (343)
T TIGR01761 4 QSVVVCGT-RFGQFYLAAFAAA-P---ERFELAGILAQGSERSRALAHRLGVPL----YCEVEELPDDIDIACVVVRSAI 74 (343)
T ss_pred cEEEEEeH-HHHHHHHHHHHhC-C---CCcEEEEEEcCCHHHHHHHHHHhCCCc----cCCHHHHhcCCCEEEEEeCCCC
Confidence 68999999 5799999999875 0 03555433 444456667888888763 6789999988888888774
Q ss_pred -chHHHHHHHHHHhcCCCCcEEE
Q 007951 188 -DAAQADNYEKIFSCMKPNSILG 209 (583)
Q Consensus 188 -d~a~~~Vl~eI~~~Lk~GaiL~ 209 (583)
+..+.++..+. |+.|+-|.
T Consensus 75 P~~~H~e~a~~a---L~aGkHVL 94 (343)
T TIGR01761 75 VGGQGSALARAL---LARGIHVL 94 (343)
T ss_pred CCccHHHHHHHH---HhCCCeEE
Confidence 45776666543 45666554
No 281
>PRK06270 homoserine dehydrogenase; Provisional
Probab=94.07 E-value=0.19 Score=53.71 Aligned_cols=99 Identities=16% Similarity=0.164 Sum_probs=54.1
Q ss_pred CEEEEEccchhHHHHHHHHHHh---hhh-hcCCceEEEEecCC----------ccc-HHHHHHcCceec-C--CCcCCHh
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDS---LAE-AKSDIVVKVGLRKG----------SRS-FAEARAAGFTEE-N--GTLGDIY 173 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds---l~~-~g~G~~ViVg~r~~----------s~s-~~~A~~~G~~~~-d--~t~~d~~ 173 (583)
.+|+|||+|.||..+++.|++. +.+ .|.+++++...+.+ ... .+.+.+.|.... . ....+..
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISGL 82 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCHH
Confidence 5799999999999999998764 110 12234543222211 111 122223332110 0 0123677
Q ss_pred hhh--ccCCeEEEeccchHHH-HH-HHHHHhcCCCCcEEEE
Q 007951 174 ETI--SGSDLVLLLISDAAQA-DN-YEKIFSCMKPNSILGL 210 (583)
Q Consensus 174 Eav--~~ADIVILavpd~a~~-~V-l~eI~~~Lk~GaiL~~ 210 (583)
+++ .+.|+|+.++|+..+. +. ++-+...|+.|.-|+.
T Consensus 83 ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVt 123 (341)
T PRK06270 83 EVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVT 123 (341)
T ss_pred HHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEc
Confidence 777 4689999999986552 22 2334555667775543
No 282
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.00 E-value=0.15 Score=53.61 Aligned_cols=74 Identities=16% Similarity=0.244 Sum_probs=56.9
Q ss_pred hhcCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 107 ~l~gikkIgIIG~G-~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
.++| |++.|||-+ ..|..++.-|.+. +..|.+.... +.++.+.+++||+||.+
T Consensus 152 ~l~G-k~vvViGrS~iVGkPla~lL~~~------~aTVtichs~-------------------T~~l~~~~~~ADIvIsA 205 (287)
T PRK14173 152 PLAG-KEVVVVGRSNIVGKPLAALLLRE------DATVTLAHSK-------------------TQDLPAVTRRADVLVVA 205 (287)
T ss_pred CCCC-CEEEEECCCCccHHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEEe
Confidence 4789 999999976 7899999999877 7777655321 23567888999999999
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
+.-... +. .+++|+|++|+|+
T Consensus 206 vGkp~~---i~--~~~vk~GavVIDV 226 (287)
T PRK14173 206 VGRPHL---IT--PEMVRPGAVVVDV 226 (287)
T ss_pred cCCcCc---cC--HHHcCCCCEEEEc
Confidence 985433 32 4567999998886
No 283
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.00 E-value=0.15 Score=53.87 Aligned_cols=75 Identities=15% Similarity=0.187 Sum_probs=57.4
Q ss_pred hhcCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 107 ~l~gikkIgIIG~G-~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
.++| |+|.|||-+ ..|..++.-|... |..|.+.... +.++.+.+++||+||.+
T Consensus 155 ~l~G-k~vvVIGrS~iVGkPla~lL~~~------~atVtv~hs~-------------------T~~l~~~~~~ADIvIsA 208 (297)
T PRK14186 155 DIAG-KKAVVVGRSILVGKPLALMLLAA------NATVTIAHSR-------------------TQDLASITREADILVAA 208 (297)
T ss_pred CCCC-CEEEEECCCccchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEEc
Confidence 5789 999999976 7899999999887 7777665321 23567788999999999
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEec
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a~ 212 (583)
+.-... +. .+++|+|++|+|+.
T Consensus 209 vGkp~~---i~--~~~ik~gavVIDvG 230 (297)
T PRK14186 209 AGRPNL---IG--AEMVKPGAVVVDVG 230 (297)
T ss_pred cCCcCc---cC--HHHcCCCCEEEEec
Confidence 985432 32 35689999988863
No 284
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=93.94 E-value=0.2 Score=52.43 Aligned_cols=68 Identities=22% Similarity=0.257 Sum_probs=41.4
Q ss_pred EEEEccchhHHHHHHHHHHhhhhhcCCc--eEEEEecCCcccHHHHHH--cCcee-cCCC--cCCHhhhhccCCeEEEec
Q 007951 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA--AGFTE-ENGT--LGDIYETISGSDLVLLLI 186 (583)
Q Consensus 114 IgIIG~G~mG~A~A~nLrdsl~~~g~G~--~ViVg~r~~s~s~~~A~~--~G~~~-~d~t--~~d~~Eav~~ADIVILav 186 (583)
|+|||.|.+|.++|..|... |+ ++++.+...++....+.+ +.... .... ..+..+.+++||+||++.
T Consensus 1 i~iiGaG~VG~~~a~~l~~~------~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~~~~l~~aDiVIita 74 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAK------GLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGDYADAADADIVVITA 74 (300)
T ss_pred CEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCCHHHhCCCCEEEEcC
Confidence 68999999999999999887 64 566655544332222221 11000 0000 112246889999999986
Q ss_pred c
Q 007951 187 S 187 (583)
Q Consensus 187 p 187 (583)
.
T Consensus 75 g 75 (300)
T cd00300 75 G 75 (300)
T ss_pred C
Confidence 5
No 285
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=93.91 E-value=0.25 Score=52.67 Aligned_cols=69 Identities=17% Similarity=0.081 Sum_probs=41.3
Q ss_pred CEEEEEcc-chhHHHHHHHHHHhhhhhcCCc-------eEEEEecCC--cccHHHHHH--cCceec-CC--CcCCHhhhh
Q 007951 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKG--SRSFAEARA--AGFTEE-NG--TLGDIYETI 176 (583)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~-------~ViVg~r~~--s~s~~~A~~--~G~~~~-d~--t~~d~~Eav 176 (583)
.||+|||. |.+|.++|..|... ++ ++++.+... ++....+.. +..... .. ...+..+.+
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~------~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~ 77 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASG------ELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAF 77 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhC------CcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHh
Confidence 58999998 99999999999876 54 455554432 112222221 111000 00 013456788
Q ss_pred ccCCeEEEec
Q 007951 177 SGSDLVLLLI 186 (583)
Q Consensus 177 ~~ADIVILav 186 (583)
++||+||++-
T Consensus 78 ~daDvVVitA 87 (323)
T TIGR01759 78 KDVDAALLVG 87 (323)
T ss_pred CCCCEEEEeC
Confidence 9999999964
No 286
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=93.81 E-value=0.24 Score=44.07 Aligned_cols=84 Identities=17% Similarity=0.180 Sum_probs=57.8
Q ss_pred hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHH--HcCceecCCCcCCHhhhhccCCeEEEeccchHHHH-HHHH
Q 007951 121 SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR--AAGFTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYEK 197 (583)
Q Consensus 121 ~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~--~~G~~~~d~t~~d~~Eav~~ADIVILavpd~a~~~-Vl~e 197 (583)
+-+..++..|++. |.+|.+.+..-........ ..++.. +.+..++++++|+||++++-....+ -+++
T Consensus 17 Sp~~~l~~~L~~~------g~~V~~~DP~v~~~~~~~~~~~~~~~~----~~~~~~~~~~~D~vvl~t~h~~f~~l~~~~ 86 (106)
T PF03720_consen 17 SPALELIEELKER------GAEVSVYDPYVDEEEIKELGKLEGVEV----CDDLEEALKGADAVVLATDHDEFRELDWEE 86 (106)
T ss_dssp -HHHHHHHHHHHT------T-EEEEE-TTSHHHHHHHHCHHHCEEE----ESSHHHHHTTESEEEESS--GGGGCCGHHH
T ss_pred CHHHHHHHHHHHC------CCEEEEECCccChHHHHhhCCccceEE----ecCHHHHhcCCCEEEEEecCHHHhccCHHH
Confidence 4566778888887 9998776654332222221 246664 5678999999999999999888877 4667
Q ss_pred HHhcCCCCcEEEEecCc
Q 007951 198 IFSCMKPNSILGLSHGF 214 (583)
Q Consensus 198 I~~~Lk~GaiL~~a~G~ 214 (583)
+...++++.+|+|.-|+
T Consensus 87 ~~~~~~~~~~iiD~~~~ 103 (106)
T PF03720_consen 87 IAKLMRKPPVIIDGRNI 103 (106)
T ss_dssp HHHHSCSSEEEEESSST
T ss_pred HHHhcCCCCEEEECccc
Confidence 88888888899998765
No 287
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.78 E-value=0.18 Score=52.92 Aligned_cols=74 Identities=20% Similarity=0.246 Sum_probs=57.4
Q ss_pred hhcCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 107 ~l~gikkIgIIG~G-~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
.++| |++.|||-+ ..|..++.-|.+. |..|.+...+ +.++.+.+++||+||.+
T Consensus 155 ~l~G-k~vvViGrS~~VGkPla~lL~~~------~AtVt~chs~-------------------T~~l~~~~~~ADIvIsA 208 (278)
T PRK14172 155 DIEG-KEVVVIGRSNIVGKPVAQLLLNE------NATVTICHSK-------------------TKNLKEVCKKADILVVA 208 (278)
T ss_pred CCCC-CEEEEECCCccchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEEc
Confidence 5789 999999976 7899999999887 7777665421 23567888999999999
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
+.-... +. .+++|+|++|+|+
T Consensus 209 vGkp~~---i~--~~~ik~gavVIDv 229 (278)
T PRK14172 209 IGRPKF---ID--EEYVKEGAIVIDV 229 (278)
T ss_pred CCCcCc---cC--HHHcCCCcEEEEe
Confidence 985443 22 3457899998887
No 288
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.76 E-value=0.19 Score=52.91 Aligned_cols=74 Identities=14% Similarity=0.179 Sum_probs=57.2
Q ss_pred hhcCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 107 ~l~gikkIgIIG~G-~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
.++| |++.|||-+ ..|..++.-|.+. |..|.+.... +.++.+.+++||+||.+
T Consensus 156 ~l~G-k~vvViGrS~iVGkPla~lL~~~------~atVt~chs~-------------------T~~l~~~~~~ADIvIsA 209 (284)
T PRK14177 156 DVTG-KNAVVVGRSPILGKPMAMLLTEM------NATVTLCHSK-------------------TQNLPSIVRQADIIVGA 209 (284)
T ss_pred CCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEEe
Confidence 5788 999999976 7899999999987 7777665321 23567888999999999
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
+.-... +. .+++|+|++|+|+
T Consensus 210 vGk~~~---i~--~~~ik~gavVIDv 230 (284)
T PRK14177 210 VGKPEF---IK--ADWISEGAVLLDA 230 (284)
T ss_pred CCCcCc---cC--HHHcCCCCEEEEe
Confidence 985443 22 3567999998886
No 289
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.72 E-value=0.19 Score=52.87 Aligned_cols=75 Identities=13% Similarity=0.221 Sum_probs=57.3
Q ss_pred hhcCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 107 ~l~gikkIgIIG~G-~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
.++| |+|.|||-+ ..|..++.-|... |..|.+.... +.++.+.+++||+||.+
T Consensus 153 ~l~G-k~vvViGrS~iVGkPla~lL~~~------~atVtichs~-------------------T~~l~~~~~~ADIvI~A 206 (282)
T PRK14169 153 DVAG-KRVVIVGRSNIVGRPLAGLMVNH------DATVTIAHSK-------------------TRNLKQLTKEADILVVA 206 (282)
T ss_pred CCCC-CEEEEECCCccchHHHHHHHHHC------CCEEEEECCC-------------------CCCHHHHHhhCCEEEEc
Confidence 4789 999999976 7899999999887 7777665321 23567788999999999
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEec
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a~ 212 (583)
+.-... +. .+++|+|++|+|+.
T Consensus 207 vG~p~~---i~--~~~vk~GavVIDvG 228 (282)
T PRK14169 207 VGVPHF---IG--ADAVKPGAVVIDVG 228 (282)
T ss_pred cCCcCc---cC--HHHcCCCcEEEEee
Confidence 985443 22 34679999988863
No 290
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.71 E-value=0.18 Score=52.97 Aligned_cols=74 Identities=20% Similarity=0.246 Sum_probs=56.9
Q ss_pred hhcCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 107 ~l~gikkIgIIG~G-~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
.++| |++.|||-+ ..|..++.-|.+. +..|.+.... +.++.+.+++||+||.+
T Consensus 154 ~l~G-k~vvVvGrS~iVGkPla~lL~~~------~atVtichs~-------------------T~~l~~~~~~ADIvI~A 207 (284)
T PRK14170 154 QIEG-KRAVVIGRSNIVGKPVAQLLLNE------NATVTIAHSR-------------------TKDLPQVAKEADILVVA 207 (284)
T ss_pred CCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEEe
Confidence 5789 999999977 7899999999877 7777665321 23567889999999999
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
+.-... +. .+++|+|++|+|+
T Consensus 208 vG~~~~---i~--~~~vk~GavVIDv 228 (284)
T PRK14170 208 TGLAKF---VK--KDYIKPGAIVIDV 228 (284)
T ss_pred cCCcCc---cC--HHHcCCCCEEEEc
Confidence 985443 22 3567899998886
No 291
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=93.70 E-value=0.18 Score=53.47 Aligned_cols=75 Identities=19% Similarity=0.156 Sum_probs=57.4
Q ss_pred hhcCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 107 ~l~gikkIgIIG~G-~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
.++| |+|.|||-+ ..|..++.-|.+. |..|.+.... +.++++.+++||+||.+
T Consensus 164 ~l~G-k~vvVIGRS~iVGkPla~lL~~~------~ATVtvchs~-------------------T~nl~~~~~~ADIvv~A 217 (299)
T PLN02516 164 PIKG-KKAVVVGRSNIVGLPVSLLLLKA------DATVTVVHSR-------------------TPDPESIVREADIVIAA 217 (299)
T ss_pred CCCC-CEEEEECCCccchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEEc
Confidence 5788 999999977 7899999999887 7777765321 23567889999999999
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEec
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a~ 212 (583)
+.-. .++. .+++|+|++|+++.
T Consensus 218 vGk~---~~i~--~~~vk~gavVIDvG 239 (299)
T PLN02516 218 AGQA---MMIK--GDWIKPGAAVIDVG 239 (299)
T ss_pred CCCc---CccC--HHHcCCCCEEEEee
Confidence 9753 2333 35689999988763
No 292
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=93.66 E-value=0.15 Score=51.68 Aligned_cols=32 Identities=22% Similarity=0.436 Sum_probs=28.7
Q ss_pred hhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEE
Q 007951 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK 144 (583)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~Vi 144 (583)
+.+++ ++|+|.|+|++|..+++.|.+. |.+|+
T Consensus 27 ~~l~~-~~v~I~G~G~VG~~~a~~L~~~------g~~vv 58 (227)
T cd01076 27 IGLAG-ARVAIQGFGNVGSHAARFLHEA------GAKVV 58 (227)
T ss_pred CCccC-CEEEEECCCHHHHHHHHHHHHC------CCEEE
Confidence 45688 9999999999999999999988 88876
No 293
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.62 E-value=0.44 Score=50.59 Aligned_cols=70 Identities=11% Similarity=0.104 Sum_probs=42.0
Q ss_pred CEEEEEcc-chhHHHHHHHHHHhhhhhcCCc--eEEEEecC--CcccHHHHHHcC-ceecCC-CcCCHhhhhccCCeEEE
Q 007951 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRK--GSRSFAEARAAG-FTEENG-TLGDIYETISGSDLVLL 184 (583)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~--~ViVg~r~--~s~s~~~A~~~G-~~~~d~-t~~d~~Eav~~ADIVIL 184 (583)
+||+|||. |++|.++|..|... ++ ++++.+.. ....++...... ....+. ...++.+.+++||+||+
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~------~~~~elvLiDi~~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvi 74 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLN------PLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVI 74 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC------CCCcEEEEEecCccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEE
Confidence 58999999 99999999999876 64 45444332 122233322211 111000 01223578999999999
Q ss_pred ecc
Q 007951 185 LIS 187 (583)
Q Consensus 185 avp 187 (583)
+.-
T Consensus 75 taG 77 (310)
T cd01337 75 PAG 77 (310)
T ss_pred eCC
Confidence 643
No 294
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=93.50 E-value=0.2 Score=52.65 Aligned_cols=75 Identities=17% Similarity=0.241 Sum_probs=57.9
Q ss_pred hhhcCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 007951 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (583)
Q Consensus 106 ~~l~gikkIgIIG~G-~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVIL 184 (583)
-.|.| +++.|||-+ ..|..+++-|... +..|.+.... +.+..+.+++||+|+.
T Consensus 152 i~l~G-k~~vVVGrS~iVGkPla~lL~~~------naTVtvcHs~-------------------T~~l~~~~k~ADIvv~ 205 (283)
T COG0190 152 IDLRG-KNVVVVGRSNIVGKPLALLLLNA------NATVTVCHSR-------------------TKDLASITKNADIVVV 205 (283)
T ss_pred CCCCC-CEEEEECCCCcCcHHHHHHHHhC------CCEEEEEcCC-------------------CCCHHHHhhhCCEEEE
Confidence 45788 999999988 5699999999987 8877765432 2356677899999999
Q ss_pred eccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 185 LISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 185 avpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
++--.... . .+.+|+|++|+|+
T Consensus 206 AvG~p~~i---~--~d~vk~gavVIDV 227 (283)
T COG0190 206 AVGKPHFI---K--ADMVKPGAVVIDV 227 (283)
T ss_pred ecCCcccc---c--cccccCCCEEEec
Confidence 98754332 2 5678999999887
No 295
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=93.50 E-value=0.2 Score=53.93 Aligned_cols=64 Identities=9% Similarity=0.028 Sum_probs=44.6
Q ss_pred hhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 007951 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (583)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVIL 184 (583)
..+++ ++|.|||.|-||.-.+++|++. |+ ++++.+|.... ...+-. .....+...++|+||.
T Consensus 170 ~~l~~-k~vLvIGaGem~~l~a~~L~~~------g~~~i~v~nRt~~~-----~~~~~~-----~~~~~~~~~~~DvVIs 232 (338)
T PRK00676 170 QKSKK-ASLLFIGYSEINRKVAYYLQRQ------GYSRITFCSRQQLT-----LPYRTV-----VREELSFQDPYDVIFF 232 (338)
T ss_pred CCccC-CEEEEEcccHHHHHHHHHHHHc------CCCEEEEEcCCccc-----cchhhh-----hhhhhhcccCCCEEEE
Confidence 34778 9999999999999999999998 86 68888887421 111100 0011134468999999
Q ss_pred ec
Q 007951 185 LI 186 (583)
Q Consensus 185 av 186 (583)
|+
T Consensus 233 ~t 234 (338)
T PRK00676 233 GS 234 (338)
T ss_pred cC
Confidence 74
No 296
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=93.40 E-value=0.4 Score=51.35 Aligned_cols=88 Identities=15% Similarity=0.201 Sum_probs=55.6
Q ss_pred hhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCC---------------------cccH---HHHHH
Q 007951 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG---------------------SRSF---AEARA 159 (583)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~---------------------s~s~---~~A~~ 159 (583)
.+.|++ ++|.|||+|..|..+|.+|... |+ ++.+.+++. ++.. +...+
T Consensus 19 Q~~L~~-~~VlIiG~GglGs~va~~La~a------Gvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~ 91 (338)
T PRK12475 19 QRKIRE-KHVLIVGAGALGAANAEALVRA------GIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRK 91 (338)
T ss_pred HHhhcC-CcEEEECCCHHHHHHHHHHHHc------CCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHH
Confidence 577888 9999999999999999999988 76 555554431 0111 01111
Q ss_pred --cCceec----CCCcCCHhhhhccCCeEEEeccchHHHHHHHHHH
Q 007951 160 --AGFTEE----NGTLGDIYETISGSDLVLLLISDAAQADNYEKIF 199 (583)
Q Consensus 160 --~G~~~~----d~t~~d~~Eav~~ADIVILavpd~a~~~Vl~eI~ 199 (583)
.++... +.+..+.+++++++|+||.++-+....-++.++.
T Consensus 92 inp~v~i~~~~~~~~~~~~~~~~~~~DlVid~~D~~~~r~~in~~~ 137 (338)
T PRK12475 92 INSEVEIVPVVTDVTVEELEELVKEVDLIIDATDNFDTRLLINDLS 137 (338)
T ss_pred HCCCcEEEEEeccCCHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHH
Confidence 122110 1111235678899999999997666555666654
No 297
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=93.34 E-value=0.23 Score=45.49 Aligned_cols=31 Identities=26% Similarity=0.367 Sum_probs=25.5
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEec
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLR 148 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r 148 (583)
++|.|||+|..|..++++|..+ |+ ++.+.++
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~------Gv~~i~lvD~ 34 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARS------GVGKITLVDD 34 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHH------TTSEEEEEES
T ss_pred CEEEEECcCHHHHHHHHHHHHh------CCCceeecCC
Confidence 7999999999999999999998 76 5555543
No 298
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.25 E-value=0.29 Score=52.11 Aligned_cols=75 Identities=11% Similarity=0.061 Sum_probs=41.5
Q ss_pred CEEEEEcc-chhHHHHHHHHHHh-hhhhcCCceEEEEecCCcccHHHHHHcCcee------cCC-CcCCHhhhhccCCeE
Q 007951 112 NQIGVIGW-GSQGPAQAQNLRDS-LAEAKSDIVVKVGLRKGSRSFAEARAAGFTE------ENG-TLGDIYETISGSDLV 182 (583)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrds-l~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~------~d~-t~~d~~Eav~~ADIV 182 (583)
.||+|||. |.+|.+++..|... +..-..+.++++.++........+....+.. .+- ...+..+++++||+|
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDiV 82 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDVA 82 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCEE
Confidence 47999999 99999999999875 0000002366665553221111111111110 000 024556889999999
Q ss_pred EEec
Q 007951 183 LLLI 186 (583)
Q Consensus 183 ILav 186 (583)
|++.
T Consensus 83 I~tA 86 (325)
T cd01336 83 ILVG 86 (325)
T ss_pred EEeC
Confidence 9863
No 299
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.25 E-value=0.24 Score=52.04 Aligned_cols=74 Identities=15% Similarity=0.152 Sum_probs=56.8
Q ss_pred hhcCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 107 ~l~gikkIgIIG~G-~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
.++| |+|.|||-+ ..|..++.-|... |..|.+.... +.++.+.+++||+||.+
T Consensus 155 ~l~G-k~vvViGrS~~VGkPla~lL~~~------~ATVt~chs~-------------------T~dl~~~~k~ADIvIsA 208 (282)
T PRK14180 155 KTEG-AYAVVVGASNVVGKPVSQLLLNA------KATVTTCHRF-------------------TTDLKSHTTKADILIVA 208 (282)
T ss_pred CCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEEcCC-------------------CCCHHHHhhhcCEEEEc
Confidence 5889 999999976 7899999999887 7777665321 23566778999999999
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
+.-... +. .+++|+|++|+|+
T Consensus 209 vGkp~~---i~--~~~vk~gavVIDv 229 (282)
T PRK14180 209 VGKPNF---IT--ADMVKEGAVVIDV 229 (282)
T ss_pred cCCcCc---CC--HHHcCCCcEEEEe
Confidence 985443 22 3557899998886
No 300
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.24 E-value=0.22 Score=55.28 Aligned_cols=75 Identities=15% Similarity=0.103 Sum_probs=50.4
Q ss_pred hhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
..+.+ ++|.|+|+|-.|.++++-|++. |.+|.+.++......+...+.|+.... -....+-+.++|+||..
T Consensus 11 ~~~~~-~~v~v~G~G~sG~a~a~~L~~~------G~~V~~~D~~~~~~~~~l~~~gi~~~~--~~~~~~~~~~~d~vV~S 81 (473)
T PRK00141 11 PQELS-GRVLVAGAGVSGRGIAAMLSEL------GCDVVVADDNETARHKLIEVTGVADIS--TAEASDQLDSFSLVVTS 81 (473)
T ss_pred ccccC-CeEEEEccCHHHHHHHHHHHHC------CCEEEEECCChHHHHHHHHhcCcEEEe--CCCchhHhcCCCEEEeC
Confidence 45667 8999999999999999999998 988777665433322333456775410 01223456789999874
Q ss_pred --ccch
Q 007951 186 --ISDA 189 (583)
Q Consensus 186 --vpd~ 189 (583)
+|+.
T Consensus 82 pgi~~~ 87 (473)
T PRK00141 82 PGWRPD 87 (473)
T ss_pred CCCCCC
Confidence 4543
No 301
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.20 E-value=0.25 Score=52.09 Aligned_cols=74 Identities=19% Similarity=0.243 Sum_probs=56.5
Q ss_pred hhcCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 107 ~l~gikkIgIIG~G-~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
.++| |++.|||-+ ..|..++.-|.+. +..|.+...+ +.++.+.+++||+||.+
T Consensus 156 ~l~G-K~vvViGrS~iVGkPla~lL~~~------~ATVtichs~-------------------T~~L~~~~~~ADIvV~A 209 (288)
T PRK14171 156 NLTG-KNVVIIGRSNIVGKPLSALLLKE------NCSVTICHSK-------------------THNLSSITSKADIVVAA 209 (288)
T ss_pred CCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEEc
Confidence 4789 999999977 7899999999887 7777665321 23567888999999999
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
+.-.. ++. .+++|+|++|+|+
T Consensus 210 vGkp~---~i~--~~~vk~GavVIDv 230 (288)
T PRK14171 210 IGSPL---KLT--AEYFNPESIVIDV 230 (288)
T ss_pred cCCCC---ccC--HHHcCCCCEEEEe
Confidence 98432 232 3567999998886
No 302
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.20 E-value=0.25 Score=52.00 Aligned_cols=75 Identities=15% Similarity=0.193 Sum_probs=56.9
Q ss_pred hhcCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 107 ~l~gikkIgIIG~G-~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
.++| |++.|||-+ ..|..++.-|... +..|.+.... ..++.+.+++||+||.+
T Consensus 155 ~l~G-k~vvViGrS~iVG~Pla~lL~~~------~atVt~chs~-------------------t~~l~~~~~~ADIvI~A 208 (284)
T PRK14190 155 DISG-KHVVVVGRSNIVGKPVGQLLLNE------NATVTYCHSK-------------------TKNLAELTKQADILIVA 208 (284)
T ss_pred CCCC-CEEEEECCCCccHHHHHHHHHHC------CCEEEEEeCC-------------------chhHHHHHHhCCEEEEe
Confidence 4789 999999966 7899999999877 7777665321 23567889999999999
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEec
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a~ 212 (583)
+.-.. ++. .+++|+|++|+|++
T Consensus 209 vG~p~---~i~--~~~ik~gavVIDvG 230 (284)
T PRK14190 209 VGKPK---LIT--ADMVKEGAVVIDVG 230 (284)
T ss_pred cCCCC---cCC--HHHcCCCCEEEEee
Confidence 97543 232 34578999998873
No 303
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.17 E-value=0.19 Score=53.08 Aligned_cols=68 Identities=19% Similarity=0.233 Sum_probs=41.9
Q ss_pred EEEEEccchhHHHHHHHHHHhhhhhcCCc--eEEEEecCCccc----HHHHHHcCceec-C--CCcCCHhhhhccCCeEE
Q 007951 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRS----FAEARAAGFTEE-N--GTLGDIYETISGSDLVL 183 (583)
Q Consensus 113 kIgIIG~G~mG~A~A~nLrdsl~~~g~G~--~ViVg~r~~s~s----~~~A~~~G~~~~-d--~t~~d~~Eav~~ADIVI 183 (583)
||+|||.|.+|.++|..|... ++ ++++.+...++. .+.....-+... + -+..+ .+.+++||+||
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~------~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~-y~~~~~aDivv 73 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALAL------GLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGD-YDDCADADIIV 73 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECC-HHHhCCCCEEE
Confidence 699999999999999999877 65 555555433322 233222211100 0 01123 46789999999
Q ss_pred Eecc
Q 007951 184 LLIS 187 (583)
Q Consensus 184 Lavp 187 (583)
++.-
T Consensus 74 itaG 77 (307)
T cd05290 74 ITAG 77 (307)
T ss_pred ECCC
Confidence 9643
No 304
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.15 E-value=0.26 Score=51.87 Aligned_cols=74 Identities=19% Similarity=0.153 Sum_probs=56.5
Q ss_pred hhcCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 107 ~l~gikkIgIIG~G-~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
.++| |++.|||-+ ..|..++.-|... +..|.+.... +.++.+.+++||+||.+
T Consensus 154 ~l~G-k~vvVvGrS~iVGkPla~lL~~~------~atVt~chs~-------------------T~nl~~~~~~ADIvIsA 207 (282)
T PRK14166 154 DLEG-KDAVIIGASNIVGRPMATMLLNA------GATVSVCHIK-------------------TKDLSLYTRQADLIIVA 207 (282)
T ss_pred CCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEEc
Confidence 4789 999999977 7899999999877 7777655331 23567888999999999
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
+.-... +. .+++|+|++|+|+
T Consensus 208 vGkp~~---i~--~~~vk~GavVIDv 228 (282)
T PRK14166 208 AGCVNL---LR--SDMVKEGVIVVDV 228 (282)
T ss_pred CCCcCc---cC--HHHcCCCCEEEEe
Confidence 985433 22 3467899998886
No 305
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=93.02 E-value=0.49 Score=50.48 Aligned_cols=91 Identities=14% Similarity=0.201 Sum_probs=58.8
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHH-cCceecCCCcC-CHh----hhh--ccCCeEE
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGFTEENGTLG-DIY----ETI--SGSDLVL 183 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~-~G~~~~d~t~~-d~~----Eav--~~ADIVI 183 (583)
.++.|+|.|.+|...++.++.. |...++..+.++...+.|++ .|...-..... +.. +.. ..+|++|
T Consensus 170 ~~V~V~GaGpIGLla~~~a~~~------Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vi 243 (350)
T COG1063 170 GTVVVVGAGPIGLLAIALAKLL------GASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVI 243 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHHc------CCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEE
Confidence 3799999999999988888877 76444555666677889988 44432000001 111 222 3589999
Q ss_pred EeccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 184 LLISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 184 Lavpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
-|+- ....+.+....+++|-.|++.
T Consensus 244 e~~G---~~~~~~~ai~~~r~gG~v~~v 268 (350)
T COG1063 244 EAVG---SPPALDQALEALRPGGTVVVV 268 (350)
T ss_pred ECCC---CHHHHHHHHHHhcCCCEEEEE
Confidence 9999 334566666677777665543
No 306
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.99 E-value=0.27 Score=51.96 Aligned_cols=74 Identities=19% Similarity=0.180 Sum_probs=56.9
Q ss_pred hhcCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 107 ~l~gikkIgIIG~G-~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
.++| |+|.|||-+ ..|..++.-|.+. +..|.+.... +.++.+.+++||+||.+
T Consensus 157 ~l~G-k~vvViGrS~iVGkPla~lL~~~------~aTVt~chs~-------------------T~~l~~~~~~ADIvVsA 210 (294)
T PRK14187 157 NLSG-SDAVVIGRSNIVGKPMACLLLGE------NCTVTTVHSA-------------------TRDLADYCSKADILVAA 210 (294)
T ss_pred CCCC-CEEEEECCCccchHHHHHHHhhC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEEc
Confidence 4889 999999977 7899999999887 7777655321 23567889999999999
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
+.-... +. ..++|+|++|+|+
T Consensus 211 vGkp~~---i~--~~~ik~gaiVIDV 231 (294)
T PRK14187 211 VGIPNF---VK--YSWIKKGAIVIDV 231 (294)
T ss_pred cCCcCc---cC--HHHcCCCCEEEEe
Confidence 985443 22 3457899998886
No 307
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.85 E-value=0.32 Score=51.18 Aligned_cols=74 Identities=16% Similarity=0.189 Sum_probs=56.1
Q ss_pred hhcCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 107 ~l~gikkIgIIG~G-~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
.++| |++.|||-+ ..|..++.-|.+. +..|.+.... +.++.+.+++||+||.+
T Consensus 154 ~l~G-k~vvViGrS~iVGkPla~lL~~~------~AtVtichs~-------------------T~nl~~~~~~ADIvI~A 207 (282)
T PRK14182 154 DPKG-KRALVVGRSNIVGKPMAMMLLER------HATVTIAHSR-------------------TADLAGEVGRADILVAA 207 (282)
T ss_pred CCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEEe
Confidence 4789 999999977 7899999999877 7777664321 23567788999999999
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
+.-.. ++. .+++|+|++|+|+
T Consensus 208 vGk~~---~i~--~~~ik~gaiVIDv 228 (282)
T PRK14182 208 IGKAE---LVK--GAWVKEGAVVIDV 228 (282)
T ss_pred cCCcC---ccC--HHHcCCCCEEEEe
Confidence 98432 333 3567999998886
No 308
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=92.82 E-value=0.28 Score=52.30 Aligned_cols=68 Identities=15% Similarity=0.143 Sum_probs=39.3
Q ss_pred EEEEEcc-chhHHHHHHHHHHhhhhhcCCc-------eEEEEecCCcccHHHHHHcCceec-----CC--CcCCHhhhhc
Q 007951 113 QIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKGSRSFAEARAAGFTEE-----NG--TLGDIYETIS 177 (583)
Q Consensus 113 kIgIIG~-G~mG~A~A~nLrdsl~~~g~G~-------~ViVg~r~~s~s~~~A~~~G~~~~-----d~--t~~d~~Eav~ 177 (583)
+|+|||. |.+|.+++..|... ++ ++++.+.........++...+... .. ...+..+.++
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~------~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~ 74 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARG------RMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFT 74 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhc------cccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhC
Confidence 5899999 99999999999875 43 355554422211111111111100 00 0124467889
Q ss_pred cCCeEEEec
Q 007951 178 GSDLVLLLI 186 (583)
Q Consensus 178 ~ADIVILav 186 (583)
+||+||++-
T Consensus 75 ~aDiVVitA 83 (324)
T TIGR01758 75 DVDVAILVG 83 (324)
T ss_pred CCCEEEEcC
Confidence 999999964
No 309
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=92.79 E-value=0.26 Score=53.42 Aligned_cols=74 Identities=19% Similarity=0.215 Sum_probs=56.2
Q ss_pred hhcCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 107 ~l~gikkIgIIG~G-~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
.++| |++.|||-+ ..|..++.-|.+. +..|.+...+ +.++.+.+++|||||.+
T Consensus 228 ~l~G-K~vvVIGRS~iVGkPLa~LL~~~------~ATVTicHs~-------------------T~nl~~~~r~ADIVIsA 281 (364)
T PLN02616 228 EIKG-KRAVVIGRSNIVGMPAALLLQRE------DATVSIVHSR-------------------TKNPEEITREADIIISA 281 (364)
T ss_pred CCCC-CEEEEECCCccccHHHHHHHHHC------CCeEEEeCCC-------------------CCCHHHHHhhCCEEEEc
Confidence 4678 999999966 7899999999887 7777665321 23567888999999999
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
+.-... +. .+.+|+|++|+|+
T Consensus 282 vGkp~~---i~--~d~vK~GAvVIDV 302 (364)
T PLN02616 282 VGQPNM---VR--GSWIKPGAVVIDV 302 (364)
T ss_pred CCCcCc---CC--HHHcCCCCEEEec
Confidence 985433 22 3567999998886
No 310
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=92.76 E-value=0.22 Score=52.09 Aligned_cols=76 Identities=21% Similarity=0.096 Sum_probs=51.0
Q ss_pred hcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHHcCceecC--CCcCC---HhhhhccCCe
Q 007951 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEEN--GTLGD---IYETISGSDL 181 (583)
Q Consensus 108 l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~~~A~~~G~~~~d--~t~~d---~~Eav~~ADI 181 (583)
+++ +++.|||.|-.|.|++..|.+. |. ++.+.+|..++..+.+......... ....+ ..+.+.++|+
T Consensus 125 ~~~-k~vlilGaGGaarAi~~aL~~~------g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~di 197 (283)
T PRK14027 125 AKL-DSVVQVGAGGVGNAVAYALVTH------GVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADG 197 (283)
T ss_pred cCC-CeEEEECCcHHHHHHHHHHHHC------CCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcCE
Confidence 556 8999999999999999999987 86 6778888766655555442100000 00112 2335567899
Q ss_pred EEEeccchH
Q 007951 182 VLLLISDAA 190 (583)
Q Consensus 182 VILavpd~a 190 (583)
||.+||...
T Consensus 198 vINaTp~Gm 206 (283)
T PRK14027 198 VVNATPMGM 206 (283)
T ss_pred EEEcCCCCC
Confidence 999998543
No 311
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=92.68 E-value=0.59 Score=49.68 Aligned_cols=69 Identities=13% Similarity=0.139 Sum_probs=41.1
Q ss_pred EEEEEcc-chhHHHHHHHHHHhhhhhcCCc--eEEEEecCC--cccHHHHHHcC-ceecCCCcC-CHhhhhccCCeEEEe
Q 007951 113 QIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKG--SRSFAEARAAG-FTEENGTLG-DIYETISGSDLVLLL 185 (583)
Q Consensus 113 kIgIIG~-G~mG~A~A~nLrdsl~~~g~G~--~ViVg~r~~--s~s~~~A~~~G-~~~~d~t~~-d~~Eav~~ADIVILa 185 (583)
||+|||. |.+|.++|..|... ++ ++++.+... ...++...... ......+.. +..+.+++||+||++
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~------~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvit 74 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQ------PYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIP 74 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhC------CCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEe
Confidence 6999999 99999999999876 55 555554332 12222222111 011000001 236789999999997
Q ss_pred cc
Q 007951 186 IS 187 (583)
Q Consensus 186 vp 187 (583)
.-
T Consensus 75 aG 76 (312)
T TIGR01772 75 AG 76 (312)
T ss_pred CC
Confidence 54
No 312
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.65 E-value=0.37 Score=52.50 Aligned_cols=71 Identities=24% Similarity=0.215 Sum_probs=48.3
Q ss_pred hcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccH----HHHHHcCceecCCCcCCHhhhhccCCeEE
Q 007951 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF----AEARAAGFTEENGTLGDIYETISGSDLVL 183 (583)
Q Consensus 108 l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~----~~A~~~G~~~~d~t~~d~~Eav~~ADIVI 183 (583)
+++ |+|.|||.|.+|.++|..|.+. |++|++.++.....+ +...+.|....- .....+...++|+||
T Consensus 3 ~~~-k~v~iiG~g~~G~~~A~~l~~~------G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~d~vv 73 (450)
T PRK14106 3 LKG-KKVLVVGAGVSGLALAKFLKKL------GAKVILTDEKEEDQLKEALEELGELGIELVL--GEYPEEFLEGVDLVV 73 (450)
T ss_pred cCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCchHHHHHHHHHHHhcCCEEEe--CCcchhHhhcCCEEE
Confidence 567 9999999999999999999998 999887766532222 222334554210 111234557799999
Q ss_pred Eecc
Q 007951 184 LLIS 187 (583)
Q Consensus 184 Lavp 187 (583)
+++-
T Consensus 74 ~~~g 77 (450)
T PRK14106 74 VSPG 77 (450)
T ss_pred ECCC
Confidence 9765
No 313
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.65 E-value=0.33 Score=51.14 Aligned_cols=74 Identities=18% Similarity=0.198 Sum_probs=55.6
Q ss_pred hhcCCCEEEEEccc-hhHHHHHHHHHH--hhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEE
Q 007951 107 AFNGINQIGVIGWG-SQGPAQAQNLRD--SLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (583)
Q Consensus 107 ~l~gikkIgIIG~G-~mG~A~A~nLrd--sl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVI 183 (583)
.++| |++.|||-+ ..|..++.-|.. . +..|.+.... +.++.+.+++||+||
T Consensus 155 ~l~G-k~vvViGrS~~VGkPla~lL~~~~~------~atVtvchs~-------------------T~~l~~~~k~ADIvV 208 (284)
T PRK14193 155 ELAG-AHVVVIGRGVTVGRPIGLLLTRRSE------NATVTLCHTG-------------------TRDLAAHTRRADIIV 208 (284)
T ss_pred CCCC-CEEEEECCCCcchHHHHHHHhhccC------CCEEEEeCCC-------------------CCCHHHHHHhCCEEE
Confidence 4788 999999966 789999999976 4 5566655321 235778899999999
Q ss_pred EeccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 184 LLISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 184 Lavpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
.++.-... +. ..++|+|++|+|+
T Consensus 209 ~AvGkp~~---i~--~~~ik~GavVIDv 231 (284)
T PRK14193 209 AAAGVAHL---VT--ADMVKPGAAVLDV 231 (284)
T ss_pred EecCCcCc---cC--HHHcCCCCEEEEc
Confidence 99985432 32 3568999998886
No 314
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=92.63 E-value=0.61 Score=46.11 Aligned_cols=36 Identities=22% Similarity=0.319 Sum_probs=29.9
Q ss_pred hhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEe
Q 007951 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGL 147 (583)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~ 147 (583)
.+.|+. .+|.|||+|..|..++++|..+ |+ ++.+.+
T Consensus 14 q~~L~~-s~VlviG~gglGsevak~L~~~------GVg~i~lvD 50 (198)
T cd01485 14 QNKLRS-AKVLIIGAGALGAEIAKNLVLA------GIDSITIVD 50 (198)
T ss_pred HHHHhh-CcEEEECCCHHHHHHHHHHHHc------CCCEEEEEE
Confidence 567788 9999999999999999999988 76 344443
No 315
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=92.63 E-value=1.1 Score=49.98 Aligned_cols=74 Identities=16% Similarity=0.038 Sum_probs=41.2
Q ss_pred CEEEEEcc-chhHHHHHHHHHHhhhhhc--CCc--eEEEEecCCcccHHHHHH--cCc-eecCC-C-cCCHhhhhccCCe
Q 007951 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAK--SDI--VVKVGLRKGSRSFAEARA--AGF-TEENG-T-LGDIYETISGSDL 181 (583)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrdsl~~~g--~G~--~ViVg~r~~s~s~~~A~~--~G~-~~~d~-t-~~d~~Eav~~ADI 181 (583)
-||+|||. |++|.++|..|... .=+| .++ ++++.+...++....+.+ ++. ..... . ..+..+.+++||+
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~-~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~kdaDi 179 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASG-EVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQDAEW 179 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhc-ccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhCcCCE
Confidence 68999999 99999999988753 0011 022 454444443333322221 111 00000 0 1244578899999
Q ss_pred EEEec
Q 007951 182 VLLLI 186 (583)
Q Consensus 182 VILav 186 (583)
||+.-
T Consensus 180 VVitA 184 (444)
T PLN00112 180 ALLIG 184 (444)
T ss_pred EEECC
Confidence 99964
No 316
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=92.62 E-value=0.3 Score=52.72 Aligned_cols=74 Identities=19% Similarity=0.120 Sum_probs=55.7
Q ss_pred hhcCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 107 ~l~gikkIgIIG~G-~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
.++| |++.|||-+ ..|..++.-|.+. +..|.+.... +.+..+.+++|||||.+
T Consensus 211 ~l~G-K~vvVIGRS~iVGkPla~LL~~~------~ATVTicHs~-------------------T~nl~~~~~~ADIvIsA 264 (345)
T PLN02897 211 EIAG-KNAVVIGRSNIVGLPMSLLLQRH------DATVSTVHAF-------------------TKDPEQITRKADIVIAA 264 (345)
T ss_pred CCCC-CEEEEECCCccccHHHHHHHHHC------CCEEEEEcCC-------------------CCCHHHHHhhCCEEEEc
Confidence 4788 999999976 6799999988877 7776654321 23567788999999999
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
+.-... +. .+.+|+|++|+|+
T Consensus 265 vGkp~~---v~--~d~vk~GavVIDV 285 (345)
T PLN02897 265 AGIPNL---VR--GSWLKPGAVVIDV 285 (345)
T ss_pred cCCcCc---cC--HHHcCCCCEEEEc
Confidence 985443 22 3557999999886
No 317
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.61 E-value=0.34 Score=51.59 Aligned_cols=64 Identities=14% Similarity=0.092 Sum_probs=39.7
Q ss_pred EEEEEcc-chhHHHHHHHHHHhhhhhcCCc-------eEEEEecCC--cccH----HHHHHc-----CceecCCCcCCHh
Q 007951 113 QIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKG--SRSF----AEARAA-----GFTEENGTLGDIY 173 (583)
Q Consensus 113 kIgIIG~-G~mG~A~A~nLrdsl~~~g~G~-------~ViVg~r~~--s~s~----~~A~~~-----G~~~~d~t~~d~~ 173 (583)
||+|||. |.+|.+++..|... ++ ++++.+... +... +..... +... ..+..
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~------~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i----~~~~~ 71 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASG------ELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVI----TTDPE 71 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhC------CccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEE----ecChH
Confidence 7999999 99999999999875 43 355544433 2111 111110 1111 13456
Q ss_pred hhhccCCeEEEec
Q 007951 174 ETISGSDLVLLLI 186 (583)
Q Consensus 174 Eav~~ADIVILav 186 (583)
+.+++||+||++-
T Consensus 72 ~~~~~aDiVVitA 84 (323)
T cd00704 72 EAFKDVDVAILVG 84 (323)
T ss_pred HHhCCCCEEEEeC
Confidence 8899999999863
No 318
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.60 E-value=0.33 Score=53.54 Aligned_cols=69 Identities=28% Similarity=0.187 Sum_probs=47.7
Q ss_pred hcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCc----ccHHHHHHcCceecCCCcCCHhhhhccCCeEE
Q 007951 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (583)
Q Consensus 108 l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s----~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVI 183 (583)
+++ ++|.|||.|..|.+.|..|++. |++|.+.++.+. ...+..++.|+... ..+..+...++|+||
T Consensus 14 ~~~-~~v~viG~G~~G~~~A~~L~~~------G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~---~~~~~~~~~~~D~Vv 83 (480)
T PRK01438 14 WQG-LRVVVAGLGVSGFAAADALLEL------GARVTVVDDGDDERHRALAAILEALGATVR---LGPGPTLPEDTDLVV 83 (480)
T ss_pred cCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCchhhhHHHHHHHHHcCCEEE---ECCCccccCCCCEEE
Confidence 567 8999999999999999999988 998877664432 11234556687541 112122345789999
Q ss_pred Eec
Q 007951 184 LLI 186 (583)
Q Consensus 184 Lav 186 (583)
+++
T Consensus 84 ~s~ 86 (480)
T PRK01438 84 TSP 86 (480)
T ss_pred ECC
Confidence 865
No 319
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=92.49 E-value=0.49 Score=47.47 Aligned_cols=28 Identities=21% Similarity=0.407 Sum_probs=25.6
Q ss_pred hhhhcCCCEEEEEccchhHHHHHHHHHHh
Q 007951 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDS 133 (583)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~A~A~nLrds 133 (583)
.+.|++ ++|.|||+|..|..++++|...
T Consensus 16 q~~L~~-~~VlivG~GglGs~va~~La~~ 43 (228)
T cd00757 16 QEKLKN-ARVLVVGAGGLGSPAAEYLAAA 43 (228)
T ss_pred HHHHhC-CcEEEECCCHHHHHHHHHHHHc
Confidence 467788 9999999999999999999988
No 320
>PRK15076 alpha-galactosidase; Provisional
Probab=92.45 E-value=0.24 Score=54.80 Aligned_cols=75 Identities=20% Similarity=0.197 Sum_probs=43.0
Q ss_pred CEEEEEccchhHHHHHH--HHHHhhhhhcCCceEEEEecCCcccHHHH--------HHcCceecCCCcCCHhhhhccCCe
Q 007951 112 NQIGVIGWGSQGPAQAQ--NLRDSLAEAKSDIVVKVGLRKGSRSFAEA--------RAAGFTEENGTLGDIYETISGSDL 181 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~--nLrdsl~~~g~G~~ViVg~r~~s~s~~~A--------~~~G~~~~d~t~~d~~Eav~~ADI 181 (583)
+||+|||.|+||.+.+. .+... ..-.+.+|++.+. ++...+.+ ...+....-..+.|..+++++||+
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~--~~l~~~evvLvDi-d~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~dADf 78 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSV--PALRDAEIALMDI-DPERLEESEIVARKLAESLGASAKITATTDRREALQGADY 78 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhC--ccCCCCEEEEECC-CHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCCCCE
Confidence 79999999999977665 66422 0011446655544 33323211 112211000114567899999999
Q ss_pred EEEeccch
Q 007951 182 VLLLISDA 189 (583)
Q Consensus 182 VILavpd~ 189 (583)
||.++-..
T Consensus 79 Vv~ti~vg 86 (431)
T PRK15076 79 VINAIQVG 86 (431)
T ss_pred EeEeeeeC
Confidence 99987653
No 321
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=92.43 E-value=1.2 Score=46.86 Aligned_cols=93 Identities=22% Similarity=0.144 Sum_probs=61.3
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecC--CcccHHHHHHcCceecCCCcCCHhh--hhccCCeEEE
Q 007951 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK--GSRSFAEARAAGFTEENGTLGDIYE--TISGSDLVLL 184 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~--~s~s~~~A~~~G~~~~d~t~~d~~E--av~~ADIVIL 184 (583)
.| .+|.|+|.|.+|...++.++.. |.+|++..+. +++..+.+++.|...-+....+..+ .....|+||-
T Consensus 172 ~g-~~vlI~G~G~vG~~a~q~ak~~------G~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vid 244 (355)
T cd08230 172 NP-RRALVLGAGPIGLLAALLLRLR------GFEVYVLNRRDPPDPKADIVEELGATYVNSSKTPVAEVKLVGEFDLIIE 244 (355)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCeEEEEecCCCCHHHHHHHHHcCCEEecCCccchhhhhhcCCCCEEEE
Confidence 57 8999999999999999998887 8877666553 3456778888887531111111111 2245799999
Q ss_pred eccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 185 LISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 185 avpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
++.... .+.+....+++|..++..
T Consensus 245 ~~g~~~---~~~~~~~~l~~~G~~v~~ 268 (355)
T cd08230 245 ATGVPP---LAFEALPALAPNGVVILF 268 (355)
T ss_pred CcCCHH---HHHHHHHHccCCcEEEEE
Confidence 987432 445555667776655433
No 322
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.37 E-value=0.34 Score=51.23 Aligned_cols=79 Identities=20% Similarity=0.212 Sum_probs=54.6
Q ss_pred hhcCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 107 ~l~gikkIgIIG~G-~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
.++| |++.|||-+ ..|..++.-|.+.+.. .+..|.+.... ..++.+.+++||+||.+
T Consensus 156 ~l~G-k~vvViGrS~iVG~Pla~lL~~~~~~--~~atVt~~hs~-------------------t~~l~~~~~~ADIvI~A 213 (295)
T PRK14174 156 ETKG-KHCVVVGRSNIVGKPMANLMLQKLKE--SNCTVTICHSA-------------------TKDIPSYTRQADILIAA 213 (295)
T ss_pred CCCC-CEEEEECCCCcchHHHHHHHHhcccc--CCCEEEEEeCC-------------------chhHHHHHHhCCEEEEe
Confidence 4788 999999976 7899999888762100 05566554321 23567889999999999
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEec
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a~ 212 (583)
+.-. .++. ..++|+|++|+|++
T Consensus 214 vg~~---~li~--~~~vk~GavVIDVg 235 (295)
T PRK14174 214 IGKA---RFIT--ADMVKPGAVVIDVG 235 (295)
T ss_pred cCcc---CccC--HHHcCCCCEEEEee
Confidence 9644 2333 23469999988874
No 323
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=92.35 E-value=0.79 Score=46.17 Aligned_cols=84 Identities=18% Similarity=0.044 Sum_probs=56.8
Q ss_pred hhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCC-cccHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 007951 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-SRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (583)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~-s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVIL 184 (583)
=.|+| +++.|||.|..|.-=+..|.+. |-+|+|....- ++......+.++...+ ...+..+.. .+++||.
T Consensus 8 ~~l~~-k~VlvvGgG~va~rKa~~ll~~------ga~v~Vvs~~~~~el~~~~~~~~i~~~~-~~~~~~~~~-~~~lvia 78 (210)
T COG1648 8 LDLEG-KKVLVVGGGSVALRKARLLLKA------GADVTVVSPEFEPELKALIEEGKIKWIE-REFDAEDLD-DAFLVIA 78 (210)
T ss_pred EEcCC-CEEEEECCCHHHHHHHHHHHhc------CCEEEEEcCCccHHHHHHHHhcCcchhh-cccChhhhc-CceEEEE
Confidence 34788 9999999999999999999988 88777765543 3333444444422111 123444444 4999999
Q ss_pred eccchHHHHHHHHH
Q 007951 185 LISDAAQADNYEKI 198 (583)
Q Consensus 185 avpd~a~~~Vl~eI 198 (583)
+|.|....+-+.+.
T Consensus 79 At~d~~ln~~i~~~ 92 (210)
T COG1648 79 ATDDEELNERIAKA 92 (210)
T ss_pred eCCCHHHHHHHHHH
Confidence 99998776544433
No 324
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=92.30 E-value=0.67 Score=45.84 Aligned_cols=36 Identities=25% Similarity=0.235 Sum_probs=30.1
Q ss_pred hhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEe
Q 007951 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGL 147 (583)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~ 147 (583)
.+.|++ ++|.|||+|..|..++++|..+ |+ ++.+.+
T Consensus 16 Q~~L~~-s~VlIiG~gglG~evak~La~~------GVg~i~lvD 52 (197)
T cd01492 16 QKRLRS-ARILLIGLKGLGAEIAKNLVLS------GIGSLTILD 52 (197)
T ss_pred HHHHHh-CcEEEEcCCHHHHHHHHHHHHc------CCCEEEEEE
Confidence 577888 9999999999999999999988 77 444443
No 325
>PRK06349 homoserine dehydrogenase; Provisional
Probab=92.23 E-value=0.35 Score=53.28 Aligned_cols=91 Identities=20% Similarity=0.279 Sum_probs=50.1
Q ss_pred CEEEEEccchhHHHHHHHHHHhhh----hhcCCceEEE-EecCCcccHHHHHHcCceecCCCcCCHhhhhc--cCCeEEE
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLA----EAKSDIVVKV-GLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLL 184 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~----~~g~G~~ViV-g~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~--~ADIVIL 184 (583)
.+|||||+|.+|..++..|.+..+ ..|.++++.. ..++..+ .......+.. ...+.++++. +.|+|+.
T Consensus 4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~-~~~~~~~~~~----~~~d~~~ll~d~~iDvVve 78 (426)
T PRK06349 4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEK-DRGVDLPGIL----LTTDPEELVNDPDIDIVVE 78 (426)
T ss_pred EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhh-ccCCCCcccc----eeCCHHHHhhCCCCCEEEE
Confidence 579999999999999988865411 1122344332 2332211 1100011111 1457788885 5799999
Q ss_pred eccchHHHHHHHHHHhcCCCCcEEE
Q 007951 185 LISDAAQADNYEKIFSCMKPNSILG 209 (583)
Q Consensus 185 avpd~a~~~Vl~eI~~~Lk~GaiL~ 209 (583)
++++.... .+-+...|+.|+-|+
T Consensus 79 ~tg~~~~~--~~~~~~aL~~GkhVV 101 (426)
T PRK06349 79 LMGGIEPA--RELILKALEAGKHVV 101 (426)
T ss_pred CCCCchHH--HHHHHHHHHCCCeEE
Confidence 98764221 222335566777554
No 326
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=92.22 E-value=0.65 Score=47.44 Aligned_cols=28 Identities=25% Similarity=0.423 Sum_probs=26.1
Q ss_pred hhhhcCCCEEEEEccchhHHHHHHHHHHh
Q 007951 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDS 133 (583)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~A~A~nLrds 133 (583)
.+.|+. ++|.|||+|..|..++++|...
T Consensus 27 Q~~L~~-~~VliiG~GglGs~va~~La~~ 54 (245)
T PRK05690 27 QEKLKA-ARVLVVGLGGLGCAASQYLAAA 54 (245)
T ss_pred HHHhcC-CeEEEECCCHHHHHHHHHHHHc
Confidence 578888 9999999999999999999988
No 327
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=92.20 E-value=0.82 Score=49.04 Aligned_cols=88 Identities=17% Similarity=0.204 Sum_probs=55.3
Q ss_pred hhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCC---------------------cccHHHHHH---
Q 007951 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG---------------------SRSFAEARA--- 159 (583)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~---------------------s~s~~~A~~--- 159 (583)
.+.|+. .+|.|||+|-+|..+|++|..+ |+ ++.+.++.. .+....+..
T Consensus 19 Q~~L~~-~~VlVvG~GglGs~va~~La~a------Gvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~ 91 (339)
T PRK07688 19 QQKLRE-KHVLIIGAGALGTANAEMLVRA------GVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEE 91 (339)
T ss_pred HHHhcC-CcEEEECCCHHHHHHHHHHHHc------CCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHH
Confidence 567788 9999999999999999999988 76 555555431 111111111
Q ss_pred --cCcee--c--CCCcCCHhhhhccCCeEEEeccchHHHHHHHHHH
Q 007951 160 --AGFTE--E--NGTLGDIYETISGSDLVLLLISDAAQADNYEKIF 199 (583)
Q Consensus 160 --~G~~~--~--d~t~~d~~Eav~~ADIVILavpd~a~~~Vl~eI~ 199 (583)
..+.. . +-+..+..+.++++|+||.++-......++.++.
T Consensus 92 inp~v~v~~~~~~~~~~~~~~~~~~~DlVid~~Dn~~~r~~ln~~~ 137 (339)
T PRK07688 92 INSDVRVEAIVQDVTAEELEELVTGVDLIIDATDNFETRFIVNDAA 137 (339)
T ss_pred HCCCcEEEEEeccCCHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHH
Confidence 11110 0 0011124567889999999988776666666654
No 328
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=92.17 E-value=0.8 Score=49.86 Aligned_cols=168 Identities=15% Similarity=0.187 Sum_probs=90.9
Q ss_pred CEEEEEcc-chhHHHHHHHHH-HhhhhhcCCce---EEEEecCCcccHHHHHHcCceecCCCcCCH-h-hhhccCCeEEE
Q 007951 112 NQIGVIGW-GSQGPAQAQNLR-DSLAEAKSDIV---VKVGLRKGSRSFAEARAAGFTEENGTLGDI-Y-ETISGSDLVLL 184 (583)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLr-dsl~~~g~G~~---ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~-~-Eav~~ADIVIL 184 (583)
++|||||+ |..|..+.+.|. +. .+. ++..... ++..+- ..|......+.+. . +..++.|++|.
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~------~fp~~~~~~~ss~--~s~g~~--~~f~~~~~~v~~~~~~~~~~~vDivff 70 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEER------DFDAIRPVFFSTS--QLGQAA--PSFGGTTGTLQDAFDIDALKALDIIIT 70 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCC------CCccccEEEEEch--hhCCCc--CCCCCCcceEEcCcccccccCCCEEEE
Confidence 57999997 999999999888 44 442 2222111 111111 1111000012222 1 35678999999
Q ss_pred eccchHHHHHHHHHHhcCCCC--cEEEEecCchhhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEE
Q 007951 185 LISDAAQADNYEKIFSCMKPN--SILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSS 262 (583)
Q Consensus 185 avpd~a~~~Vl~eI~~~Lk~G--aiL~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~al 262 (583)
+.+.....++.+..+ +.| .+|+|.++.- ..-+|++.| -|---...+..... .|+..
T Consensus 71 a~g~~~s~~~~p~~~---~aG~~~~VIDnSSa~---------Rmd~dVPLV--VPeVN~~~i~~~~~-------~gi~~- 128 (366)
T TIGR01745 71 CQGGDYTNEIYPKLR---ESGWQGYWIDAASSL---------RMKDDAVII--LDPVNQDVITDGLN-------NGIRT- 128 (366)
T ss_pred cCCHHHHHHHHHHHH---hCCCCeEEEECChhh---------hcCCCCCEE--eCCcCHHHHHhHHh-------CCcCe-
Confidence 999886666666554 468 6788887642 112345544 35333333322111 24533
Q ss_pred EeecCCCCHHHHHHHH-HHHHHhCCCcccccchhhhhhhhhhhhhhhHhhHHHHHHHHHHHHH
Q 007951 263 FAVHQDVDGRATNVAL-GWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRF 324 (583)
Q Consensus 263 iAv~qd~sgeale~a~-ala~aIG~~~vieTtf~eE~~sDlfgeqtvLsG~~pAlieAl~d~~ 324 (583)
|+ +++++--.+-.++ .|.+..|-.+++-||+.. +||.+...|+-+.+..
T Consensus 129 ia-nPNCst~~l~~aL~pL~~~~~i~~v~VsTyQA------------vSGAG~~g~~eL~~Qt 178 (366)
T TIGR01745 129 FV-GGNCTVSLMLMSLGGLFANDLVEWVSVATYQA------------ASGGGARHMRELLTQM 178 (366)
T ss_pred EE-CcCHHHHHHHHHHHHHHhccCccEEEEEechh------------hhhcCHHHHHHHHHHH
Confidence 23 3444544444333 455556666677665544 6788877776666544
No 329
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=92.14 E-value=0.83 Score=47.94 Aligned_cols=99 Identities=15% Similarity=0.147 Sum_probs=48.0
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHH---------cCceecCCCcCCHhhhhccCCeE
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA---------AGFTEENGTLGDIYETISGSDLV 182 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~---------~G~~~~d~t~~d~~Eav~~ADIV 182 (583)
++|+|||.|.+-.+...-.+.. +.+.. +.+.+.++...+.+++ .++........+...-+.+.|+|
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~----~~~~~-v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV 196 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQH----GPGAR-VHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVV 196 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--H----TT--E-EEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEE
T ss_pred ceEEEEcCCCcchHHHHHHHHh----CCCCe-EEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEE
Confidence 5999999999987755444333 11323 4566666655555532 11111000011222235688999
Q ss_pred EEeccch----HHHHHHHHHHhcCCCCcEEE--EecCch
Q 007951 183 LLLISDA----AQADNYEKIFSCMKPNSILG--LSHGFL 215 (583)
Q Consensus 183 ILavpd~----a~~~Vl~eI~~~Lk~GaiL~--~a~G~~ 215 (583)
+++.-.. .-.++++.|.++|++|+.|+ ..+|..
T Consensus 197 ~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa~GlR 235 (276)
T PF03059_consen 197 FLAALVGMDAEPKEEILEHLAKHMAPGARLVVRSAHGLR 235 (276)
T ss_dssp EE-TT-S----SHHHHHHHHHHHS-TTSEEEEEE--GGG
T ss_pred EEhhhcccccchHHHHHHHHHhhCCCCcEEEEecchhhH
Confidence 9987665 44579999999999999876 667764
No 330
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=92.13 E-value=0.95 Score=43.27 Aligned_cols=69 Identities=22% Similarity=0.231 Sum_probs=48.3
Q ss_pred cCCCEEEEEc--cchhHHHHHHHHHHhhhhhcCCceEEEEecCC----c--ccH----HHHHHcCc--eecCCCcCCHhh
Q 007951 109 NGINQIGVIG--WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----S--RSF----AEARAAGF--TEENGTLGDIYE 174 (583)
Q Consensus 109 ~gikkIgIIG--~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~----s--~s~----~~A~~~G~--~~~d~t~~d~~E 174 (583)
+| +||++|| .+++..|++..+..- |.++.+....+ . .-. +.+.+.|. .. ..+.+|
T Consensus 1 ~g-l~i~~vGD~~~rv~~Sl~~~~~~~------g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~----~~~~~e 69 (158)
T PF00185_consen 1 KG-LKIAYVGDGHNRVAHSLIELLAKF------GMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITI----TDDIEE 69 (158)
T ss_dssp TT-EEEEEESSTTSHHHHHHHHHHHHT------TSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEE----ESSHHH
T ss_pred CC-CEEEEECCCCChHHHHHHHHHHHc------CCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEE----EeCHHH
Confidence 57 8999999 389999999999887 88866655443 1 122 22333443 32 468899
Q ss_pred hhccCCeEEEeccc
Q 007951 175 TISGSDLVLLLISD 188 (583)
Q Consensus 175 av~~ADIVILavpd 188 (583)
+++++|+|+...-.
T Consensus 70 ~l~~aDvvy~~~~~ 83 (158)
T PF00185_consen 70 ALKGADVVYTDRWQ 83 (158)
T ss_dssp HHTT-SEEEEESSS
T ss_pred hcCCCCEEEEcCcc
Confidence 99999999886655
No 331
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.06 E-value=0.45 Score=53.11 Aligned_cols=70 Identities=19% Similarity=0.158 Sum_probs=49.5
Q ss_pred hhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
..+.| ++|.|+|+|..|.+.++-|+.. |.+|++.++. ....+.+++.|+.... .....+.++++|+||..
T Consensus 8 ~~~~~-~~v~V~G~G~sG~aa~~~L~~~------G~~v~~~D~~-~~~~~~l~~~g~~~~~--~~~~~~~l~~~D~VV~S 77 (488)
T PRK03369 8 PLLPG-APVLVAGAGVTGRAVLAALTRF------GARPTVCDDD-PDALRPHAERGVATVS--TSDAVQQIADYALVVTS 77 (488)
T ss_pred cccCC-CeEEEEcCCHHHHHHHHHHHHC------CCEEEEEcCC-HHHHHHHHhCCCEEEc--CcchHhHhhcCCEEEEC
Confidence 45577 9999999999999999988888 9888776543 3334445666775311 11234567789998885
No 332
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=92.00 E-value=0.67 Score=50.00 Aligned_cols=92 Identities=20% Similarity=0.223 Sum_probs=57.0
Q ss_pred hcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceec-CCCcCCHhhhhc-cCCeEEEe
Q 007951 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS-GSDLVLLL 185 (583)
Q Consensus 108 l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~-d~t~~d~~Eav~-~ADIVILa 185 (583)
-.| ++|+|+|.|-.|+--.+-.+.. |.+|+...+. ++..+.|++.|.... +....+..+.++ .+|+|+.+
T Consensus 165 ~pG-~~V~I~G~GGlGh~avQ~Aka~------ga~Via~~~~-~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~t 236 (339)
T COG1064 165 KPG-KWVAVVGAGGLGHMAVQYAKAM------GAEVIAITRS-EEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDT 236 (339)
T ss_pred CCC-CEEEEECCcHHHHHHHHHHHHc------CCeEEEEeCC-hHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEEC
Confidence 346 8999999997777766666666 8887665554 455788999887421 111112223332 39999999
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
+++.. ++...+.|++|-+++.+
T Consensus 237 v~~~~----~~~~l~~l~~~G~~v~v 258 (339)
T COG1064 237 VGPAT----LEPSLKALRRGGTLVLV 258 (339)
T ss_pred CChhh----HHHHHHHHhcCCEEEEE
Confidence 99332 33334455665555433
No 333
>PRK05086 malate dehydrogenase; Provisional
Probab=91.97 E-value=1 Score=47.75 Aligned_cols=72 Identities=18% Similarity=0.173 Sum_probs=41.5
Q ss_pred CEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCccc----HHHHHHc-CceecCCCcCCHhhhhccCCeEEEe
Q 007951 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS----FAEARAA-GFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s----~~~A~~~-G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
|||+|||. |.+|.+++..|...+ +.+.++.+.++. +.. ++..... -....+....+..+.++++|+||++
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~---~~~~el~L~d~~-~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIit 76 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQL---PAGSELSLYDIA-PVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLIS 76 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCC---CCccEEEEEecC-CCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEc
Confidence 68999999 999999999886521 113355554443 222 2221100 0111000013556788999999998
Q ss_pred cc
Q 007951 186 IS 187 (583)
Q Consensus 186 vp 187 (583)
.-
T Consensus 77 aG 78 (312)
T PRK05086 77 AG 78 (312)
T ss_pred CC
Confidence 65
No 334
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=91.90 E-value=0.47 Score=51.71 Aligned_cols=93 Identities=15% Similarity=0.156 Sum_probs=53.3
Q ss_pred CEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCc--ccHHHHHHcCceecC-CCcCCHh-hhhccCCeEEEec
Q 007951 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--RSFAEARAAGFTEEN-GTLGDIY-ETISGSDLVLLLI 186 (583)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s--~s~~~A~~~G~~~~d-~t~~d~~-Eav~~ADIVILav 186 (583)
+||+|||. |..|..+.+-|.+. .++++....+..+ +...... ..+...+ ....+.+ +.++++|+||+++
T Consensus 39 ~kVaIvGATG~vG~eLlrlL~~h-----P~~el~~l~s~~saG~~i~~~~-~~l~~~~~~~~~~~~~~~~~~~DvVf~Al 112 (381)
T PLN02968 39 KRIFVLGASGYTGAEVRRLLANH-----PDFEITVMTADRKAGQSFGSVF-PHLITQDLPNLVAVKDADFSDVDAVFCCL 112 (381)
T ss_pred cEEEEECCCChHHHHHHHHHHhC-----CCCeEEEEEChhhcCCCchhhC-ccccCccccceecCCHHHhcCCCEEEEcC
Confidence 79999996 89999998877654 1346554443221 1111110 0000000 0011222 2257899999999
Q ss_pred cchHHHHHHHHHHhcCCCCcEEEEecCc
Q 007951 187 SDAAQADNYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 187 pd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
|.....++.+.+ +.|..|+|.++.
T Consensus 113 p~~~s~~i~~~~----~~g~~VIDlSs~ 136 (381)
T PLN02968 113 PHGTTQEIIKAL----PKDLKIVDLSAD 136 (381)
T ss_pred CHHHHHHHHHHH----hCCCEEEEcCch
Confidence 998666666653 457778877664
No 335
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=91.84 E-value=1.2 Score=41.05 Aligned_cols=29 Identities=24% Similarity=0.339 Sum_probs=24.2
Q ss_pred EEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEe
Q 007951 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGL 147 (583)
Q Consensus 113 kIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~ 147 (583)
+|.|||+|.+|..++++|... |+ ++.+.+
T Consensus 1 ~VliiG~GglGs~ia~~L~~~------Gv~~i~ivD 30 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARS------GVGKITLID 30 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHC------CCCEEEEEc
Confidence 589999999999999999988 76 454443
No 336
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.83 E-value=0.46 Score=50.27 Aligned_cols=74 Identities=14% Similarity=0.157 Sum_probs=54.8
Q ss_pred hhcCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCC----ceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCe
Q 007951 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDL 181 (583)
Q Consensus 107 ~l~gikkIgIIG~G-~mG~A~A~nLrdsl~~~g~G----~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADI 181 (583)
.++| |++.|||-+ ..|..++.-|.+. | ..|.+.... +.++.+.+++||+
T Consensus 154 ~l~G-K~vvViGrS~iVGkPla~lL~~~------~~~~~aTVtvchs~-------------------T~nl~~~~~~ADI 207 (293)
T PRK14185 154 ETSG-KKCVVLGRSNIVGKPMAQLMMQK------AYPGDCTVTVCHSR-------------------SKNLKKECLEADI 207 (293)
T ss_pred CCCC-CEEEEECCCccchHHHHHHHHcC------CCCCCCEEEEecCC-------------------CCCHHHHHhhCCE
Confidence 4789 999999977 7899999998765 4 345544221 2356788899999
Q ss_pred EEEeccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 182 VLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 182 VILavpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
||.++.-... +. .+.+|+|++|+|+
T Consensus 208 vIsAvGkp~~---i~--~~~vk~gavVIDv 232 (293)
T PRK14185 208 IIAALGQPEF---VK--ADMVKEGAVVIDV 232 (293)
T ss_pred EEEccCCcCc---cC--HHHcCCCCEEEEe
Confidence 9999985443 22 3567999998886
No 337
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.80 E-value=0.43 Score=52.39 Aligned_cols=65 Identities=29% Similarity=0.282 Sum_probs=45.1
Q ss_pred hcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 007951 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (583)
Q Consensus 108 l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVIL 184 (583)
++| ++|.|||+|-.|.+.|.-|++. |++|.+.++.... .....+.|+.. . ..+ .+.+.++|+||.
T Consensus 7 ~~~-~~i~viG~G~~G~~~a~~l~~~------G~~v~~~D~~~~~-~~~l~~~g~~~-~--~~~-~~~~~~~d~vv~ 71 (460)
T PRK01390 7 FAG-KTVAVFGLGGSGLATARALVAG------GAEVIAWDDNPAS-RAKAAAAGITT-A--DLR-TADWSGFAALVL 71 (460)
T ss_pred cCC-CEEEEEeecHhHHHHHHHHHHC------CCEEEEECCChhh-HHHHHhcCccc-c--CCC-hhHHcCCCEEEE
Confidence 678 8999999999999999999988 9987766544222 22334567753 1 112 234578999886
No 338
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=91.76 E-value=0.32 Score=52.56 Aligned_cols=84 Identities=15% Similarity=0.043 Sum_probs=50.3
Q ss_pred CEEEEEccchhHHHH-HHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCce---e-cCC-C---------c--CCHh-
Q 007951 112 NQIGVIGWGSQGPAQ-AQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT---E-ENG-T---------L--GDIY- 173 (583)
Q Consensus 112 kkIgIIG~G~mG~A~-A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~---~-~d~-t---------~--~d~~- 173 (583)
|||.++|.|++|+++ +.-|.++ |++|+..+ .++...+.-.+.|.- . .+. . . .+.+
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~------g~~V~~vd-~~~~~v~aL~~qglY~v~~~~~~~~~~~i~~v~~~~~~~~~~ 73 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADN------GFEVTFVD-VNQELIDALNKRKSYQVIVVGENEQVETVSNVSAINSADEEA 73 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhC------CCeEEEEE-CCHHHHHHHhcCCCeEEEEecCCCcEEEEeeEeeeCCCCHHH
Confidence 689999999999977 5555555 78765554 333344444455641 1 111 0 0 0112
Q ss_pred --hhhccCCeEEEeccchHHHHHHHHHHhcC
Q 007951 174 --ETISGSDLVLLLISDAAQADNYEKIFSCM 202 (583)
Q Consensus 174 --Eav~~ADIVILavpd~a~~~Vl~eI~~~L 202 (583)
+.+..+|+|++++++.....+...|.+.|
T Consensus 74 ~~~~~~~~dlvt~~v~~~~~~s~~~~l~~~L 104 (381)
T PRK02318 74 VIEAIAEADLVTTAVGPNILPFIAPLIAKGL 104 (381)
T ss_pred HHHHhcCCCEEEeCCCcccchhHHHHHHHHH
Confidence 23447788888888777666666555544
No 339
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=91.76 E-value=1 Score=48.12 Aligned_cols=71 Identities=20% Similarity=0.162 Sum_probs=40.7
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHH--cCceec--CCC-cC-CHhhhhccCCeEEEe
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA--AGFTEE--NGT-LG-DIYETISGSDLVLLL 185 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~--~G~~~~--d~t-~~-d~~Eav~~ADIVILa 185 (583)
+||+|||.|.+|.+.|..|... +.+-++++.+....+..-.|.+ ++.... +.. .. ...+.+++||+|++.
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~----~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvit 76 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQ----GLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVIT 76 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcc----cccceEEEEEcccccccchhcchhhcchhccCceEEecCCChhhhcCCCEEEEe
Confidence 5899999999999999999655 1233555555442222222211 111000 000 11 125678999999996
Q ss_pred c
Q 007951 186 I 186 (583)
Q Consensus 186 v 186 (583)
-
T Consensus 77 A 77 (313)
T COG0039 77 A 77 (313)
T ss_pred C
Confidence 5
No 340
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=91.60 E-value=0.9 Score=48.44 Aligned_cols=157 Identities=12% Similarity=0.051 Sum_probs=90.3
Q ss_pred CEEEEEc-cchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccchH
Q 007951 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (583)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~a 190 (583)
.||+||| -|-.|.-+.+-|.+. + .+++. .....+. +. ..+.+++++++|+||+|+|+..
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~H-P----~~el~-~l~s~~~---------~~-----~~~~~~~~~~~D~vFlalp~~~ 61 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGR-D----DIELL-SIAPDRR---------KD-----AAERAKLLNAADVAILCLPDDA 61 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCC-C----CeEEE-EEecccc---------cC-----cCCHhHhhcCCCEEEECCCHHH
Confidence 4899999 578888888777754 1 23432 2222111 22 2345567788999999999998
Q ss_pred HHHHHHHHHhcCCCCcEEEEecCchhhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEeecCCCC
Q 007951 191 QADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVD 270 (583)
Q Consensus 191 ~~~Vl~eI~~~Lk~GaiL~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv~qd~s 270 (583)
..++.+.+. ..|..|+|.+|-- .+.+ +++.+.|--... .|+...+ ... |+ .+.+.
T Consensus 62 s~~~~~~~~---~~g~~VIDlSadf---------Rl~~--~~~yglPEln~~-~~~~i~~--------a~l-IA-nPgC~ 116 (310)
T TIGR01851 62 AREAVSLVD---NPNTCIIDASTAY---------RTAD--DWAYGFPELAPG-QREKIRN--------SKR-IA-NPGCY 116 (310)
T ss_pred HHHHHHHHH---hCCCEEEECChHH---------hCCC--CCeEEccccCHH-HHHhhcc--------CCE-EE-CCCCH
Confidence 888877653 3688888887641 1112 566667744322 2222222 222 43 44445
Q ss_pred HHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhHhhHHHHHHHHHH
Q 007951 271 GRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLF 321 (583)
Q Consensus 271 geale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvLsG~~pAlieAl~ 321 (583)
..+.-++++=+...|.. +......+.+.+..||.+-..++.+.
T Consensus 117 aTa~~LaL~PL~~~~li--------~~~~~~~~~a~SG~SGAGr~~~~~l~ 159 (310)
T TIGR01851 117 PTGFIALMRPLVEAGIL--------PADFPITINAVSGYSGGGKAMIADYE 159 (310)
T ss_pred HHHHHHHHHHHHHcCCc--------cccceEEEEeccccCccChhhhHHhh
Confidence 55555555544444532 11111245566777888877666655
No 341
>PLN00106 malate dehydrogenase
Probab=91.59 E-value=0.41 Score=51.09 Aligned_cols=70 Identities=11% Similarity=0.122 Sum_probs=43.3
Q ss_pred CEEEEEcc-chhHHHHHHHHHHhhhhhcCCc--eEEEEecCCc--ccHHHHHHcCc-eecC-CCcCCHhhhhccCCeEEE
Q 007951 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGS--RSFAEARAAGF-TEEN-GTLGDIYETISGSDLVLL 184 (583)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~--~ViVg~r~~s--~s~~~A~~~G~-~~~d-~t~~d~~Eav~~ADIVIL 184 (583)
.||+|||. |.+|.++|..|... ++ ++++.+.... ..++....... ...+ ....+..+++++||+||+
T Consensus 19 ~KV~IiGaaG~VG~~~a~~l~~~------~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVi 92 (323)
T PLN00106 19 FKVAVLGAAGGIGQPLSLLMKMN------PLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVII 92 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC------CCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEE
Confidence 69999999 99999999999876 54 5555544321 12222111111 1111 112345789999999999
Q ss_pred ecc
Q 007951 185 LIS 187 (583)
Q Consensus 185 avp 187 (583)
+.-
T Consensus 93 tAG 95 (323)
T PLN00106 93 PAG 95 (323)
T ss_pred eCC
Confidence 643
No 342
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=91.55 E-value=0.39 Score=54.41 Aligned_cols=75 Identities=25% Similarity=0.186 Sum_probs=49.9
Q ss_pred hcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhh-hccCCeEEEec
Q 007951 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET-ISGSDLVLLLI 186 (583)
Q Consensus 108 l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Ea-v~~ADIVILav 186 (583)
+++ +++.|+|.|-+|.+++..|.+. |.+|++.+|..++..+.+.+.+... -...+..+. ...+|+|+.++
T Consensus 377 ~~~-k~vlIlGaGGagrAia~~L~~~------G~~V~i~nR~~e~a~~la~~l~~~~--~~~~~~~~~~~~~~diiINtT 447 (529)
T PLN02520 377 LAG-KLFVVIGAGGAGKALAYGAKEK------GARVVIANRTYERAKELADAVGGQA--LTLADLENFHPEEGMILANTT 447 (529)
T ss_pred CCC-CEEEEECCcHHHHHHHHHHHHC------CCEEEEEcCCHHHHHHHHHHhCCce--eeHhHhhhhccccCeEEEecc
Confidence 567 8999999999999999999988 8888887776555555554443211 001122222 23568888888
Q ss_pred cchHH
Q 007951 187 SDAAQ 191 (583)
Q Consensus 187 pd~a~ 191 (583)
|....
T Consensus 448 ~vGm~ 452 (529)
T PLN02520 448 SVGMQ 452 (529)
T ss_pred cCCCC
Confidence 76543
No 343
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=91.51 E-value=0.27 Score=46.68 Aligned_cols=91 Identities=18% Similarity=0.256 Sum_probs=51.6
Q ss_pred ccccchhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccC
Q 007951 100 LFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGS 179 (583)
Q Consensus 100 ~f~~~~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~A 179 (583)
.|+. .+..+| ++|++||+ +.+ ++..|+.. +.++.+.++.... ... ...++. ..+.++++++|
T Consensus 2 ~~d~-~~~~~~-~~V~~VG~--f~P-~~~~l~~~------~~~v~v~d~~~~~-~~~-~~~~~~-----~~~~~~~l~~a 63 (147)
T PF04016_consen 2 AFDL-LEIGPG-DKVGMVGY--FQP-LVEKLKER------GAEVRVFDLNPDN-IGE-EPGDVP-----DEDAEEILPWA 63 (147)
T ss_dssp CHHH-CCTTTT-SEEEEES----HC-CHHHHCCC------CSEEEEEESSGGG---S-SCT-EE-----GGGHHHHGGG-
T ss_pred hhhh-hhhcCC-CEEEEEcC--cHH-HHHHHhcC------CCCEEEEECCCCC-CCC-CCCcCC-----HHHHHHHHccC
Confidence 3444 477788 99999997 333 67777765 7788888775322 111 112222 34678899999
Q ss_pred CeEEEeccchHHHHHHHHHHhcCCCCcEEE
Q 007951 180 DLVLLLISDAAQADNYEKIFSCMKPNSILG 209 (583)
Q Consensus 180 DIVILavpd~a~~~Vl~eI~~~Lk~GaiL~ 209 (583)
|+|++.=. ...-..+++|..+.++++.++
T Consensus 64 D~viiTGs-TlvN~Ti~~iL~~~~~~~~vi 92 (147)
T PF04016_consen 64 DVVIITGS-TLVNGTIDDILELARNAREVI 92 (147)
T ss_dssp SEEEEECH-HCCTTTHHHHHHHTTTSSEEE
T ss_pred CEEEEEee-eeecCCHHHHHHhCccCCeEE
Confidence 99987422 222234445555555455443
No 344
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=91.49 E-value=0.87 Score=45.58 Aligned_cols=37 Identities=22% Similarity=0.284 Sum_probs=30.4
Q ss_pred hhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEec
Q 007951 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLR 148 (583)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r 148 (583)
.+.|+. .+|.|||+|.+|..++++|... |+ ++++.++
T Consensus 23 q~~L~~-~~V~ViG~GglGs~ia~~La~~------Gvg~i~lvD~ 60 (212)
T PRK08644 23 LEKLKK-AKVGIAGAGGLGSNIAVALARS------GVGNLKLVDF 60 (212)
T ss_pred HHHHhC-CCEEEECcCHHHHHHHHHHHHc------CCCeEEEEeC
Confidence 577888 9999999999999999999987 76 3544443
No 345
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=91.45 E-value=1.4 Score=44.89 Aligned_cols=88 Identities=19% Similarity=0.212 Sum_probs=56.3
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCce-EEEEecCCcccHHHHHHcCceecCCCcCC---Hhhhh------cc
Q 007951 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETI------SG 178 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~-ViVg~r~~s~s~~~A~~~G~~~~d~t~~d---~~Eav------~~ 178 (583)
.| .+|.|+|.|.+|...++-++.. |.+ |++. +.+++..+.+++.|+.. +.+ ..+.+ ..
T Consensus 120 ~g-~~VlV~G~G~vG~~~~~~ak~~------G~~~Vi~~-~~~~~r~~~a~~~Ga~~----~i~~~~~~~~~~~~~~~~g 187 (280)
T TIGR03366 120 KG-RRVLVVGAGMLGLTAAAAAAAA------GAARVVAA-DPSPDRRELALSFGATA----LAEPEVLAERQGGLQNGRG 187 (280)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEE-CCCHHHHHHHHHcCCcE----ecCchhhHHHHHHHhCCCC
Confidence 57 8999999999999999988887 876 5444 44555678888888742 111 11111 24
Q ss_pred CCeEEEeccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 179 ADIVILavpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
.|+|+-++.... .+++....++++..++..
T Consensus 188 ~d~vid~~G~~~---~~~~~~~~l~~~G~iv~~ 217 (280)
T TIGR03366 188 VDVALEFSGATA---AVRACLESLDVGGTAVLA 217 (280)
T ss_pred CCEEEECCCChH---HHHHHHHHhcCCCEEEEe
Confidence 788888875322 333444455665554433
No 346
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=91.40 E-value=0.65 Score=49.56 Aligned_cols=94 Identities=10% Similarity=0.030 Sum_probs=54.9
Q ss_pred CEEEEEcc-chhHHHHHHHHHHhhhhhcCC-ceEEEEecCCc-ccHHHHHHcCc------e--ecCCCcCC-HhhhhccC
Q 007951 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGS-RSFAEARAAGF------T--EENGTLGD-IYETISGS 179 (583)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrdsl~~~g~G-~~ViVg~r~~s-~s~~~A~~~G~------~--~~d~t~~d-~~Eav~~A 179 (583)
+||+|||+ |-||.-++..|.+. . ++++...+..+ ..........+ . ..+-.+.+ ..+...++
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~------~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKH------PYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVASKDV 74 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC------CCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHHhccC
Confidence 47999995 99999999887664 3 45544433321 11111111111 0 00000111 12345789
Q ss_pred CeEEEeccchHHHHHHHHHHhcCCCCcEEEEecCc
Q 007951 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 180 DIVILavpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
|+|++|+|.....++.+.+.. .|..+++.+|-
T Consensus 75 DvVf~a~p~~~s~~~~~~~~~---~G~~VIDlsg~ 106 (341)
T TIGR00978 75 DIVFSALPSEVAEEVEPKLAE---AGKPVFSNASN 106 (341)
T ss_pred CEEEEeCCHHHHHHHHHHHHH---CCCEEEECChh
Confidence 999999999988888765533 57777777764
No 347
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=91.36 E-value=0.64 Score=46.56 Aligned_cols=95 Identities=20% Similarity=0.225 Sum_probs=59.3
Q ss_pred CEEEEEc-cchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCC---HhhhhccCCeEEEecc
Q 007951 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVLLLIS 187 (583)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d---~~Eav~~ADIVILavp 187 (583)
|||+||| -|..|.-+++-..+. |++|....|+.++.... .|......-+.+ ..+.+..-|+||.+.-
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~R------GHeVTAivRn~~K~~~~---~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~ 71 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKR------GHEVTAIVRNASKLAAR---QGVTILQKDIFDLTSLASDLAGHDAVISAFG 71 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhC------CCeeEEEEeChHhcccc---ccceeecccccChhhhHhhhcCCceEEEecc
Confidence 7999999 689999999999988 99988777765543221 233111111233 3467888999999764
Q ss_pred ch------HHHHHHHHHHhcCCC-CcE-EEEecCch
Q 007951 188 DA------AQADNYEKIFSCMKP-NSI-LGLSHGFL 215 (583)
Q Consensus 188 d~------a~~~Vl~eI~~~Lk~-Gai-L~~a~G~~ 215 (583)
.. .+.+..+.+...++. |.. +.++.|..
T Consensus 72 ~~~~~~~~~~~k~~~~li~~l~~agv~RllVVGGAG 107 (211)
T COG2910 72 AGASDNDELHSKSIEALIEALKGAGVPRLLVVGGAG 107 (211)
T ss_pred CCCCChhHHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 32 223344445555554 432 56666653
No 348
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=91.33 E-value=1.1 Score=50.17 Aligned_cols=100 Identities=15% Similarity=0.201 Sum_probs=65.6
Q ss_pred hhcCCCEEEEEcc----------chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcC-----ceec------
Q 007951 107 AFNGINQIGVIGW----------GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-----FTEE------ 165 (583)
Q Consensus 107 ~l~gikkIgIIG~----------G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G-----~~~~------ 165 (583)
.++| ++|+|+|+ .+-...++..|.+. |.+|.+.+..-.. .+.....+ +...
T Consensus 321 ~~~~-~~VavlGlafK~~tdD~R~Spa~~li~~L~~~------G~~V~~~DP~v~~-~~~~~~~~~~~~~~~~~~~~~~~ 392 (473)
T PLN02353 321 TVSG-KKIAVLGFAFKKDTGDTRETPAIDVCKGLLGD------KAKLSIYDPQVTE-EQIQRDLSMNKFDWDHPRHLQPM 392 (473)
T ss_pred ccCC-CEEEEEeeeecCCCCccccChHHHHHHHHHhC------CCEEEEECCCCCh-HHHHHHhhccccccccccccccc
Confidence 4678 99999998 56777788888877 9888777654221 11111121 1000
Q ss_pred -------CCCcCCHhhhhccCCeEEEeccchHHHHH-HHHHHhcCCCCcEEEEecCc
Q 007951 166 -------NGTLGDIYETISGSDLVLLLISDAAQADN-YEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 166 -------d~t~~d~~Eav~~ADIVILavpd~a~~~V-l~eI~~~Lk~GaiL~~a~G~ 214 (583)
-..+.+..+++++||+|++++.-....++ ++++.+.|++..+|+|..++
T Consensus 393 ~~~~~~~~~~~~~~~~a~~~aD~vvi~t~~~ef~~l~~~~~~~~m~~~~~viD~rn~ 449 (473)
T PLN02353 393 SPTAVKQVSVVWDAYEATKGAHGICILTEWDEFKTLDYQKIYDNMQKPAFVFDGRNV 449 (473)
T ss_pred ccccccceeeeCCHHHHhcCCCEEEECCCChHhcccCHHHHHHhccCCCEEEECCCC
Confidence 01134557899999999999998877653 56677777765578887665
No 349
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.29 E-value=0.51 Score=49.75 Aligned_cols=79 Identities=18% Similarity=0.182 Sum_probs=55.0
Q ss_pred hhcCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 107 ~l~gikkIgIIG~G-~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
.++| |++.|||-+ ..|..++.-|.+. .-+.+..|.+.... ..++.+.+++||+||.+
T Consensus 154 ~l~G-k~vvViGrS~iVG~Pla~lL~~~--~~~~~AtVt~~hs~-------------------t~~l~~~~~~ADIVI~A 211 (286)
T PRK14184 154 SPAG-KKAVVVGRSNIVGKPLALMLGAP--GKFANATVTVCHSR-------------------TPDLAEECREADFLFVA 211 (286)
T ss_pred CCCC-CEEEEECCCccchHHHHHHHhCC--cccCCCEEEEEeCC-------------------chhHHHHHHhCCEEEEe
Confidence 4788 999999977 7899999999872 00015566554421 13567889999999999
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEec
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a~ 212 (583)
+.-... +. .+++|+|++|+|++
T Consensus 212 vG~p~l---i~--~~~vk~GavVIDVG 233 (286)
T PRK14184 212 IGRPRF---VT--ADMVKPGAVVVDVG 233 (286)
T ss_pred cCCCCc---CC--HHHcCCCCEEEEee
Confidence 964332 32 24469999988874
No 350
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=91.28 E-value=1.3 Score=45.23 Aligned_cols=98 Identities=13% Similarity=0.054 Sum_probs=60.7
Q ss_pred eeeeccccccccchhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCC-cccHHHHHHcCceecCCCcC
Q 007951 92 YIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-SRSFAEARAAGFTEENGTLG 170 (583)
Q Consensus 92 ~v~~~~r~~f~~~~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~-s~s~~~A~~~G~~~~d~t~~ 170 (583)
.++-+....|+-. =.++| ++|.|||.|.+|..=+..|.+. |.+|.|.-..- +.-.+.+....+.... ...
T Consensus 8 ~~~~~~~~~~pi~-l~~~~-~~VLVVGGG~VA~RK~~~Ll~~------gA~VtVVap~i~~el~~l~~~~~i~~~~-r~~ 78 (223)
T PRK05562 8 DIYNEENKYMFIS-LLSNK-IKVLIIGGGKAAFIKGKTFLKK------GCYVYILSKKFSKEFLDLKKYGNLKLIK-GNY 78 (223)
T ss_pred HHhhccCCEeeeE-EECCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEcCCCCHHHHHHHhCCCEEEEe-CCC
Confidence 3333334445533 45668 8999999999999989999888 87777664442 2322333322232211 112
Q ss_pred CHhhhhccCCeEEEeccchHHHHHHHHHH
Q 007951 171 DIYETISGSDLVLLLISDAAQADNYEKIF 199 (583)
Q Consensus 171 d~~Eav~~ADIVILavpd~a~~~Vl~eI~ 199 (583)
+. +-+.++++||.||.|...-+-+.+.+
T Consensus 79 ~~-~dl~g~~LViaATdD~~vN~~I~~~a 106 (223)
T PRK05562 79 DK-EFIKDKHLIVIATDDEKLNNKIRKHC 106 (223)
T ss_pred Ch-HHhCCCcEEEECCCCHHHHHHHHHHH
Confidence 22 34678999999999987766555444
No 351
>PRK08328 hypothetical protein; Provisional
Probab=91.23 E-value=1.2 Score=45.06 Aligned_cols=28 Identities=21% Similarity=0.404 Sum_probs=25.9
Q ss_pred hhhhcCCCEEEEEccchhHHHHHHHHHHh
Q 007951 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDS 133 (583)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~A~A~nLrds 133 (583)
.+.|++ .+|.|||+|-.|..++.+|...
T Consensus 22 q~~L~~-~~VlIiG~GGlGs~ia~~La~~ 49 (231)
T PRK08328 22 QEKLKK-AKVAVVGVGGLGSPVAYYLAAA 49 (231)
T ss_pred HHHHhC-CcEEEECCCHHHHHHHHHHHHc
Confidence 577888 9999999999999999999987
No 352
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=91.21 E-value=0.68 Score=49.94 Aligned_cols=85 Identities=15% Similarity=0.142 Sum_probs=62.2
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEE-EEecCCcccHHHHHHcCceecCCCcCCHhhhhccC--CeEEEeccc
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETISGS--DLVLLLISD 188 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~Vi-Vg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~A--DIVILavpd 188 (583)
-++||+|+|.|+.=++++|.-. .+ +++.|+ +..++-+++.+.|+..++.. -....+.+|++++. |+|.+.+|.
T Consensus 7 ir~Gi~g~g~ia~~f~~al~~~-p~--s~~~Ivava~~s~~~A~~fAq~~~~~~-~k~y~syEeLakd~~vDvVyi~~~~ 82 (351)
T KOG2741|consen 7 IRWGIVGAGRIARDFVRALHTL-PE--SNHQIVAVADPSLERAKEFAQRHNIPN-PKAYGSYEELAKDPEVDVVYISTPN 82 (351)
T ss_pred eEEEEeehhHHHHHHHHHhccC-cc--cCcEEEEEecccHHHHHHHHHhcCCCC-CccccCHHHHhcCCCcCEEEeCCCC
Confidence 4689999999999999998764 22 145433 33454556678888888821 12267899999876 999999999
Q ss_pred hHHHHHHHHHHh
Q 007951 189 AAQADNYEKIFS 200 (583)
Q Consensus 189 ~a~~~Vl~eI~~ 200 (583)
.++.+++-.++.
T Consensus 83 ~qH~evv~l~l~ 94 (351)
T KOG2741|consen 83 PQHYEVVMLALN 94 (351)
T ss_pred ccHHHHHHHHHH
Confidence 999888765543
No 353
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=91.10 E-value=0.72 Score=49.65 Aligned_cols=88 Identities=15% Similarity=0.219 Sum_probs=54.8
Q ss_pred CEEEEEc-cchhHHHHHHHHHHhhhhhcCCc---eEEE-E-ecCCcccHHHHHHcCceecCCCcCC-HhhhhccCCeEEE
Q 007951 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI---VVKV-G-LRKGSRSFAEARAAGFTEENGTLGD-IYETISGSDLVLL 184 (583)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrdsl~~~g~G~---~ViV-g-~r~~s~s~~~A~~~G~~~~d~t~~d-~~Eav~~ADIVIL 184 (583)
.||+||| .|..|.-+.+-|.++ ++ ++.+ . .+...+.... .|... .+.+ ..+.++++|+||+
T Consensus 8 ~kVaVvGAtG~vG~eLlrlL~~~------~hP~~~l~~las~rsaGk~~~~---~~~~~---~v~~~~~~~~~~~D~vf~ 75 (344)
T PLN02383 8 PSVAIVGVTGAVGQEFLSVLTDR------DFPYSSLKMLASARSAGKKVTF---EGRDY---TVEELTEDSFDGVDIALF 75 (344)
T ss_pred CeEEEEcCCChHHHHHHHHHHhC------CCCcceEEEEEccCCCCCeeee---cCcee---EEEeCCHHHHcCCCEEEE
Confidence 7899999 578888888888765 54 2222 1 2222222211 12110 0111 1245588999999
Q ss_pred eccchHHHHHHHHHHhcCCCCcEEEEecCc
Q 007951 185 LISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 185 avpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
++|.....++.+++. +.|..|+|.++-
T Consensus 76 a~p~~~s~~~~~~~~---~~g~~VIDlS~~ 102 (344)
T PLN02383 76 SAGGSISKKFGPIAV---DKGAVVVDNSSA 102 (344)
T ss_pred CCCcHHHHHHHHHHH---hCCCEEEECCch
Confidence 999998877777653 368888888764
No 354
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=91.09 E-value=1.1 Score=47.77 Aligned_cols=156 Identities=15% Similarity=0.107 Sum_probs=87.2
Q ss_pred CEEEEEc-cchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccchH
Q 007951 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (583)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~a 190 (583)
.+|+||| .|..|.-+.+-|.+. . .+++. .....+.. . ..+.++..+++|+||+|+|...
T Consensus 3 ~~VaIvGAtGy~G~eLlrlL~~h-p----~~~l~-~~~s~~~~------~--------~~~~~~~~~~~DvvFlalp~~~ 62 (313)
T PRK11863 3 PKVFIDGEAGTTGLQIRERLAGR-S----DIELL-SIPEAKRK------D--------AAARRELLNAADVAILCLPDDA 62 (313)
T ss_pred cEEEEECCCCHHHHHHHHHHhcC-C----CeEEE-EEecCCCC------c--------ccCchhhhcCCCEEEECCCHHH
Confidence 6899999 799999998877765 1 23432 22221111 1 1122345578999999999998
Q ss_pred HHHHHHHHHhcCCCCcEEEEecCchhhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEeecCCCC
Q 007951 191 QADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVD 270 (583)
Q Consensus 191 ~~~Vl~eI~~~Lk~GaiL~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv~qd~s 270 (583)
..++.+++. +.|..|+|.++- | .+.+ +++.+.|--... .|+...+ ... |+ ++++.
T Consensus 63 s~~~~~~~~---~~g~~VIDlSad---f------Rl~~--~~~yglPEvn~~-~~~~i~~--------~~~-Ia-nPgC~ 117 (313)
T PRK11863 63 AREAVALID---NPATRVIDASTA---H------RTAP--GWVYGFPELAPG-QRERIAA--------AKR-VA-NPGCY 117 (313)
T ss_pred HHHHHHHHH---hCCCEEEECChh---h------hcCC--CCeEEcCccCHH-HHHHhhc--------CCe-EE-cCCcH
Confidence 888887764 368888888763 1 2112 566667743221 2333332 222 33 44445
Q ss_pred HHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhHhhHHHHHHHHH
Q 007951 271 GRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESL 320 (583)
Q Consensus 271 geale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvLsG~~pAlieAl 320 (583)
..+.-++++=+..-|.. ++.....+.+.++.||.+-..++.+
T Consensus 118 ~Ta~~laL~PL~~~~li--------~~~~~i~i~a~SG~SGAG~~~~~~~ 159 (313)
T PRK11863 118 PTGAIALLRPLVDAGLL--------PADYPVSINAVSGYSGGGKAMIAAY 159 (313)
T ss_pred HHHHHHHHHHHHHcCCc--------ccCceEEEEEccccccCCccchHHH
Confidence 45555554444444432 1211123455666778777655543
No 355
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=91.02 E-value=1.3 Score=47.91 Aligned_cols=88 Identities=11% Similarity=0.101 Sum_probs=53.4
Q ss_pred hhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecC-------------------CcccHHHHHHc----
Q 007951 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK-------------------GSRSFAEARAA---- 160 (583)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~-------------------~s~s~~~A~~~---- 160 (583)
.+.+++ ++|.|||+|-.|..++.+|... |+ ++.+.++. ..+....++..
T Consensus 130 q~~l~~-~~VlvvG~GG~Gs~ia~~La~~------Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~n 202 (376)
T PRK08762 130 QRRLLE-ARVLLIGAGGLGSPAALYLAAA------GVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALN 202 (376)
T ss_pred HHHHhc-CcEEEECCCHHHHHHHHHHHHc------CCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHC
Confidence 457888 9999999999999999999988 76 45555443 11211111111
Q ss_pred -Cceec--CCCc--CCHhhhhccCCeEEEeccchHHHHHHHHHH
Q 007951 161 -GFTEE--NGTL--GDIYETISGSDLVLLLISDAAQADNYEKIF 199 (583)
Q Consensus 161 -G~~~~--d~t~--~d~~Eav~~ADIVILavpd~a~~~Vl~eI~ 199 (583)
.+... .... .+..+.++++|+||.|+-.......+.++.
T Consensus 203 p~v~v~~~~~~~~~~~~~~~~~~~D~Vv~~~d~~~~r~~ln~~~ 246 (376)
T PRK08762 203 PDVQVEAVQERVTSDNVEALLQDVDVVVDGADNFPTRYLLNDAC 246 (376)
T ss_pred CCCEEEEEeccCChHHHHHHHhCCCEEEECCCCHHHHHHHHHHH
Confidence 11110 0011 123456788999999987665555555543
No 356
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=90.90 E-value=0.4 Score=51.41 Aligned_cols=52 Identities=25% Similarity=0.369 Sum_probs=45.7
Q ss_pred hhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCcee
Q 007951 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE 164 (583)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~ 164 (583)
+.-+| .+++|+|+|..|.|.+++.|.. |..-|+|.+.++...++|++.|+.+
T Consensus 189 kv~~G-stvAVfGLG~VGLav~~Gaka~------GAsrIIgvDiN~~Kf~~ak~fGaTe 240 (375)
T KOG0022|consen 189 KVEPG-STVAVFGLGGVGLAVAMGAKAA------GASRIIGVDINPDKFEKAKEFGATE 240 (375)
T ss_pred ccCCC-CEEEEEecchHHHHHHHhHHhc------CcccEEEEecCHHHHHHHHhcCcce
Confidence 34466 8999999999999999999988 8766789999888899999999975
No 357
>PLN03075 nicotianamine synthase; Provisional
Probab=90.82 E-value=2.3 Score=45.20 Aligned_cols=100 Identities=16% Similarity=0.188 Sum_probs=60.8
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHc-----Cceec-CCCcCCHhhh---hccC
Q 007951 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-----GFTEE-NGTLGDIYET---ISGS 179 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~-----G~~~~-d~t~~d~~Ea---v~~A 179 (583)
.. ++|..||+|..|.+-..-++...+ +- .+++.+.++...+.|++. |+... .=...|..+. ..+-
T Consensus 123 ~p-~~VldIGcGpgpltaiilaa~~~p----~~-~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~F 196 (296)
T PLN03075 123 VP-TKVAFVGSGPLPLTSIVLAKHHLP----TT-SFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEY 196 (296)
T ss_pred CC-CEEEEECCCCcHHHHHHHHHhcCC----CC-EEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCc
Confidence 44 899999999887754433333210 11 356888777666666542 22100 0001222222 3578
Q ss_pred CeEEEecc----chHHHHHHHHHHhcCCCCcEEEE--ecCc
Q 007951 180 DLVLLLIS----DAAQADNYEKIFSCMKPNSILGL--SHGF 214 (583)
Q Consensus 180 DIVILavp----d~a~~~Vl~eI~~~Lk~GaiL~~--a~G~ 214 (583)
|+|++.+= .....++++.+...|+||.+++. +||.
T Consensus 197 DlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~~G~ 237 (296)
T PLN03075 197 DVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRSAHGA 237 (296)
T ss_pred CEEEEecccccccccHHHHHHHHHHhcCCCcEEEEecccch
Confidence 99999851 24557799999999999998664 4554
No 358
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=90.78 E-value=1.2 Score=45.96 Aligned_cols=87 Identities=9% Similarity=0.001 Sum_probs=56.1
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccc
Q 007951 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd 188 (583)
++ +++.|+|.|.+|...++-++.. |.++++..+..+...+.|.+.++.. ...+.-...|+||=++..
T Consensus 144 ~~-~~vlV~G~G~vG~~a~q~ak~~------G~~~v~~~~~~~~rl~~a~~~~~i~------~~~~~~~g~Dvvid~~G~ 210 (308)
T TIGR01202 144 KV-LPDLIVGHGTLGRLLARLTKAA------GGSPPAVWETNPRRRDGATGYEVLD------PEKDPRRDYRAIYDASGD 210 (308)
T ss_pred CC-CcEEEECCCHHHHHHHHHHHHc------CCceEEEeCCCHHHHHhhhhccccC------hhhccCCCCCEEEECCCC
Confidence 45 7899999999999999888877 8875555555555566665554331 111122357999999886
Q ss_pred hHHHHHHHHHHhcCCCCcEEEEe
Q 007951 189 AAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 189 ~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
.. .++...+.++++-.++..
T Consensus 211 ~~---~~~~~~~~l~~~G~iv~~ 230 (308)
T TIGR01202 211 PS---LIDTLVRRLAKGGEIVLA 230 (308)
T ss_pred HH---HHHHHHHhhhcCcEEEEE
Confidence 43 334445566666655543
No 359
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=90.72 E-value=1.4 Score=48.38 Aligned_cols=22 Identities=18% Similarity=0.084 Sum_probs=20.2
Q ss_pred CEEEEEcc-chhHHHHHHHHHHh
Q 007951 112 NQIGVIGW-GSQGPAQAQNLRDS 133 (583)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrds 133 (583)
-||+|||. |++|.++|..|...
T Consensus 45 ~KV~IIGAaG~VG~~~A~~l~~~ 67 (387)
T TIGR01757 45 VNVAVSGAAGMISNHLLFMLASG 67 (387)
T ss_pred eEEEEECCCcHHHHHHHHHHHhc
Confidence 58999999 99999999999876
No 360
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=90.62 E-value=0.65 Score=48.36 Aligned_cols=68 Identities=18% Similarity=0.115 Sum_probs=49.8
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccchH
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~a 190 (583)
+++.|||.|-.+.|++..|.+. |. +|.|.+|..++..+.+...+.. ..+.. ....+|+||.+||...
T Consensus 123 ~~vlilGaGGaarAi~~aL~~~------g~~~i~i~nR~~~~a~~la~~~~~~-----~~~~~-~~~~~dlvINaTp~Gm 190 (272)
T PRK12550 123 LVVALRGSGGMAKAVAAALRDA------GFTDGTIVARNEKTGKALAELYGYE-----WRPDL-GGIEADILVNVTPIGM 190 (272)
T ss_pred CeEEEECCcHHHHHHHHHHHHC------CCCEEEEEeCCHHHHHHHHHHhCCc-----chhhc-ccccCCEEEECCcccc
Confidence 6899999999999999999987 86 6888898876666666654432 11100 1246899999999654
Q ss_pred H
Q 007951 191 Q 191 (583)
Q Consensus 191 ~ 191 (583)
.
T Consensus 191 ~ 191 (272)
T PRK12550 191 A 191 (272)
T ss_pred C
Confidence 3
No 361
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.49 E-value=0.83 Score=49.73 Aligned_cols=70 Identities=21% Similarity=0.180 Sum_probs=46.2
Q ss_pred hcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCc---ccHHHHHHcCceecCCCcCCHhhhhcc-CCeEE
Q 007951 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS---RSFAEARAAGFTEENGTLGDIYETISG-SDLVL 183 (583)
Q Consensus 108 l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s---~s~~~A~~~G~~~~d~t~~d~~Eav~~-ADIVI 183 (583)
++| ++|.|+|.|.+|.+.|+.|++. |.+|++.++... ...+...+.|+....+ ....+...+ .|+||
T Consensus 3 ~~~-k~v~v~G~g~~G~s~a~~l~~~------G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~--~~~~~~~~~~~d~vV 73 (447)
T PRK02472 3 YQN-KKVLVLGLAKSGYAAAKLLHKL------GANVTVNDGKPFSENPEAQELLEEGIKVICG--SHPLELLDEDFDLMV 73 (447)
T ss_pred cCC-CEEEEEeeCHHHHHHHHHHHHC------CCEEEEEcCCCccchhHHHHHHhcCCEEEeC--CCCHHHhcCcCCEEE
Confidence 467 8999999999999999999998 998877654322 1223334557653100 123344444 89888
Q ss_pred Eec
Q 007951 184 LLI 186 (583)
Q Consensus 184 Lav 186 (583)
...
T Consensus 74 ~s~ 76 (447)
T PRK02472 74 KNP 76 (447)
T ss_pred ECC
Confidence 743
No 362
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=90.44 E-value=1.9 Score=45.16 Aligned_cols=92 Identities=14% Similarity=0.142 Sum_probs=58.2
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHHcCceec-CCCcCCHhhhhc---cCCeEE
Q 007951 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS---GSDLVL 183 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~~~A~~~G~~~~-d~t~~d~~Eav~---~ADIVI 183 (583)
+| ++|.|+|.|.+|...++-++.. |. +|++..+ +++..+.+++.|...- +..-.+..+... ..|+||
T Consensus 169 ~g-~~VlV~G~G~vG~~aiqlak~~------G~~~Vi~~~~-~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vi 240 (343)
T PRK09880 169 QG-KRVFVSGVGPIGCLIVAAVKTL------GAAEIVCADV-SPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSF 240 (343)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCcEEEEEeC-CHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEE
Confidence 57 8999999999999999888877 87 4544444 4456788888887420 101112223222 379999
Q ss_pred EeccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 184 LLISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 184 Lavpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
-++.... .++.....+++|-.++..
T Consensus 241 d~~G~~~---~~~~~~~~l~~~G~iv~~ 265 (343)
T PRK09880 241 EVSGHPS---SINTCLEVTRAKGVMVQV 265 (343)
T ss_pred ECCCCHH---HHHHHHHHhhcCCEEEEE
Confidence 9887532 334444556676655544
No 363
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=90.42 E-value=0.86 Score=48.93 Aligned_cols=89 Identities=21% Similarity=0.151 Sum_probs=52.7
Q ss_pred CEEEEEcc-chhHHHHHHHHHHhhhhhcCCce--EEEEecCCc---ccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIV--VKVGLRKGS---RSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~--ViVg~r~~s---~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
++|+|||. |..|.-+.+-|.++ ++. .+......+ +.....- ..+... -.+..+ ++++|+||++
T Consensus 5 ~~IaIvGATG~vG~eLlrlL~~~------~hP~~~l~~v~s~~~aG~~l~~~~-~~l~~~---~~~~~~-~~~vD~vFla 73 (336)
T PRK05671 5 LDIAVVGATGTVGEALVQILEER------DFPVGTLHLLASSESAGHSVPFAG-KNLRVR---EVDSFD-FSQVQLAFFA 73 (336)
T ss_pred CEEEEEccCCHHHHHHHHHHhhC------CCCceEEEEEECcccCCCeeccCC-cceEEe---eCChHH-hcCCCEEEEc
Confidence 68999995 99999999999875 442 112232211 1111000 001110 012223 4789999999
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEecCc
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
+|.....++.+++. +.|..|+|.+|-
T Consensus 74 ~p~~~s~~~v~~~~---~~G~~VIDlS~~ 99 (336)
T PRK05671 74 AGAAVSRSFAEKAR---AAGCSVIDLSGA 99 (336)
T ss_pred CCHHHHHHHHHHHH---HCCCeEEECchh
Confidence 99876666666553 357778887764
No 364
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=90.37 E-value=0.81 Score=48.42 Aligned_cols=70 Identities=17% Similarity=0.199 Sum_probs=51.6
Q ss_pred hhcCCCEEEEEccc---hhHHHHHHHHHHhhhhhcCCceEEEEecCC----cccHHHHHHcCceecCCCcCCHhhhhccC
Q 007951 107 AFNGINQIGVIGWG---SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEARAAGFTEENGTLGDIYETISGS 179 (583)
Q Consensus 107 ~l~gikkIgIIG~G---~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~----s~s~~~A~~~G~~~~d~t~~d~~Eav~~A 179 (583)
.++| .||++||-| ++..|++..+..- |.++.+....+ +.-.+.+++.|.... ...|+++++++|
T Consensus 147 ~l~g-~~va~vGD~~~~~v~~Sl~~~~a~~------g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~--~~~d~~~a~~~a 217 (301)
T TIGR00670 147 RLDG-LKIALVGDLKYGRTVHSLAEALTRF------GVEVYLISPEELRMPKEILEELKAKGIKVR--ETESLEEVIDEA 217 (301)
T ss_pred CCCC-CEEEEEccCCCCcHHHHHHHHHHHc------CCEEEEECCccccCCHHHHHHHHHcCCEEE--EECCHHHHhCCC
Confidence 3788 899999995 9999999998876 88887775542 122356666665321 146889999999
Q ss_pred CeEEEe
Q 007951 180 DLVLLL 185 (583)
Q Consensus 180 DIVILa 185 (583)
|+|...
T Consensus 218 Dvvyt~ 223 (301)
T TIGR00670 218 DVLYVT 223 (301)
T ss_pred CEEEEC
Confidence 999874
No 365
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=90.36 E-value=1.5 Score=46.62 Aligned_cols=116 Identities=9% Similarity=0.141 Sum_probs=76.7
Q ss_pred CEEEEEc-cchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhcc--CCeEEEeccc
Q 007951 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLISD 188 (583)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~--ADIVILavpd 188 (583)
.+|.|.| .|.-|..+-..++.. |-+++.|...+.- ..+-.|+.. ..++.|+-.. .|+.++++|.
T Consensus 13 ~~v~~~gi~~~~~~~~~~~~~~y------gt~~~~gV~p~~~---~~~i~G~~~----y~sv~dlp~~~~~DlAvI~vPa 79 (300)
T PLN00125 13 TRVICQGITGKNGTFHTEQAIEY------GTKMVGGVTPKKG---GTEHLGLPV----FNTVAEAKAETKANASVIYVPP 79 (300)
T ss_pred CeEEEecCCCHHHHHHHHHHHHh------CCcEEEEECCCCC---CceEcCeec----cCCHHHHhhccCCCEEEEecCH
Confidence 6788888 788888888888887 8888888765420 112257664 5677777654 7999999999
Q ss_pred hHHHHHHHHHHhcCCCCcEEEEecCchhhhhhccccc--CCCCccEEEeccCCCchh
Q 007951 189 AAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLD--FPKNIGVIAVCPKGMGPS 243 (583)
Q Consensus 189 ~a~~~Vl~eI~~~Lk~GaiL~~a~G~~i~~ie~~~i~--~p~dv~VI~v~PngPg~~ 243 (583)
....+.+++.... .-..+|++++||.....+..... -..++.++ =||+.|-.
T Consensus 80 ~~v~~al~e~~~~-Gvk~~vIisaGf~e~g~~~~~~~~ar~~girvi--GPNc~Gii 133 (300)
T PLN00125 80 PFAAAAILEAMEA-ELDLVVCITEGIPQHDMVRVKAALNRQSKTRLI--GPNCPGII 133 (300)
T ss_pred HHHHHHHHHHHHc-CCCEEEEECCCCCcccHHHHHHHHHhhcCCEEE--CCCCceee
Confidence 9999999875541 22347889999963322111111 11234444 48887665
No 366
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=90.33 E-value=1.1 Score=45.76 Aligned_cols=28 Identities=25% Similarity=0.466 Sum_probs=26.1
Q ss_pred hhhhcCCCEEEEEccchhHHHHHHHHHHh
Q 007951 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDS 133 (583)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~A~A~nLrds 133 (583)
.+.|++ .+|.|||+|-.|..++.+|...
T Consensus 19 q~~L~~-~~VlvvG~GglGs~va~~La~~ 46 (240)
T TIGR02355 19 QEALKA-SRVLIVGLGGLGCAASQYLAAA 46 (240)
T ss_pred HHHHhC-CcEEEECcCHHHHHHHHHHHHc
Confidence 577888 9999999999999999999987
No 367
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.14 E-value=0.81 Score=50.97 Aligned_cols=71 Identities=25% Similarity=0.240 Sum_probs=47.3
Q ss_pred hcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCc-ccHHHHHHc--CceecCCCcC-CHhhhhccCCeEE
Q 007951 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAA--GFTEENGTLG-DIYETISGSDLVL 183 (583)
Q Consensus 108 l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s-~s~~~A~~~--G~~~~d~t~~-d~~Eav~~ADIVI 183 (583)
+++ ++|.|||+|..|.++|+-|++. |++|.+.+.... +..+...+. |+... .. ...+.+.++|+||
T Consensus 5 ~~~-~~i~v~G~G~sG~s~a~~L~~~------G~~v~~~D~~~~~~~~~~L~~~~~~~~~~---~g~~~~~~~~~~d~vv 74 (498)
T PRK02006 5 LQG-PMVLVLGLGESGLAMARWCARH------GARLRVADTREAPPNLAALRAELPDAEFV---GGPFDPALLDGVDLVA 74 (498)
T ss_pred cCC-CEEEEEeecHhHHHHHHHHHHC------CCEEEEEcCCCCchhHHHHHhhcCCcEEE---eCCCchhHhcCCCEEE
Confidence 457 8999999999999999999998 998876554322 222333334 43321 11 2345667899999
Q ss_pred Ee--ccc
Q 007951 184 LL--ISD 188 (583)
Q Consensus 184 La--vpd 188 (583)
+. +|+
T Consensus 75 ~sp~I~~ 81 (498)
T PRK02006 75 LSPGLSP 81 (498)
T ss_pred ECCCCCC
Confidence 85 555
No 368
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.96 E-value=0.91 Score=47.93 Aligned_cols=79 Identities=11% Similarity=0.186 Sum_probs=54.8
Q ss_pred hhcCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 107 ~l~gikkIgIIG~G-~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
.++| |++.|||-+ ..|..++.-|.+.. +..+..|.+.... +.++.+.+++||+||.+
T Consensus 150 ~l~G-k~vvViGrS~iVGkPla~lL~~~~--~~~~AtVtvchs~-------------------T~~l~~~~~~ADIvV~A 207 (287)
T PRK14181 150 PLHG-RHVAIVGRSNIVGKPLAALLMQKH--PDTNATVTLLHSQ-------------------SENLTEILKTADIIIAA 207 (287)
T ss_pred CCCC-CEEEEECCCccchHHHHHHHHhCc--CCCCCEEEEeCCC-------------------CCCHHHHHhhCCEEEEc
Confidence 4789 999999977 78999999887650 0002345443211 24577889999999999
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEec
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a~ 212 (583)
+.-... +. .+.+|+|++|+|+.
T Consensus 208 vG~p~~---i~--~~~ik~GavVIDvG 229 (287)
T PRK14181 208 IGVPLF---IK--EEMIAEKAVIVDVG 229 (287)
T ss_pred cCCcCc---cC--HHHcCCCCEEEEec
Confidence 985432 32 35679999998863
No 369
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=89.90 E-value=0.69 Score=51.63 Aligned_cols=70 Identities=26% Similarity=0.265 Sum_probs=47.5
Q ss_pred hhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCccc---HHHHHHcCceecCCCcCCHhhhhccCCeEE
Q 007951 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS---FAEARAAGFTEENGTLGDIYETISGSDLVL 183 (583)
Q Consensus 107 ~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s---~~~A~~~G~~~~d~t~~d~~Eav~~ADIVI 183 (583)
.+.+ |||.|+|+|.-|.+.+..|++. |..|++.+.+.... .......++....+.. ..+...++|+|+
T Consensus 4 ~~~~-~kv~V~GLG~sG~a~a~~L~~~------G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~--~~~~~~~~d~vV 74 (448)
T COG0771 4 DFQG-KKVLVLGLGKSGLAAARFLLKL------GAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSH--DDEDLAEFDLVV 74 (448)
T ss_pred cccC-CEEEEEecccccHHHHHHHHHC------CCeEEEEcCCCCccchhhhhhhccCceeecCcc--chhccccCCEEE
Confidence 3457 9999999999999999999998 99988887543221 1222345654321111 125677889988
Q ss_pred Ee
Q 007951 184 LL 185 (583)
Q Consensus 184 La 185 (583)
+.
T Consensus 75 ~S 76 (448)
T COG0771 75 KS 76 (448)
T ss_pred EC
Confidence 73
No 370
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=89.86 E-value=1.2 Score=46.84 Aligned_cols=84 Identities=15% Similarity=0.158 Sum_probs=57.8
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccchH-
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA- 190 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~a- 190 (583)
++|+|||--.=-..+++.|.+. |++|.+..-.++. . ...|... ..+.++++++||+|++.+|+..
T Consensus 3 ~~~~v~ggd~r~~~~~~~l~~~------G~~v~~~g~~~~~-~---~~~g~~~----~~~~~~~~~~ad~ii~~~p~~~~ 68 (296)
T PRK08306 3 KHIAVIGGDARQLELIRKLVEL------GAKVSLVGFDQLD-H---GFTGATK----SSSLEEALSDVDVIILPVPGTND 68 (296)
T ss_pred cEEEEEcCcHHHHHHHHHHHHC------CCEEEEEeccccc-c---ccCCcee----eccHHHHhccCCEEEECCccccC
Confidence 8999999988888889999988 9987764222211 1 2347664 4567888999999999988621
Q ss_pred ----HHH------HH-HHHHhcCCCCcEEE
Q 007951 191 ----QAD------NY-EKIFSCMKPNSILG 209 (583)
Q Consensus 191 ----~~~------Vl-~eI~~~Lk~GaiL~ 209 (583)
... .+ .+....|++|+++.
T Consensus 69 ~~~i~~~~~~~~~~~~~~~l~~l~~~~~v~ 98 (296)
T PRK08306 69 EGNVDTVFSNEKLVLTEELLELTPEHCTIF 98 (296)
T ss_pred CceeeccccccCCcchHHHHHhcCCCCEEE
Confidence 000 11 35677788987544
No 371
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=89.70 E-value=1.1 Score=47.64 Aligned_cols=88 Identities=15% Similarity=0.193 Sum_probs=54.6
Q ss_pred CEEEEEc-cchhHHHHHHHHHHhhhhhcCCc---eEEEEecCCc--ccHHHHHHcCceecCCCcCCHh-hhhccCCeEEE
Q 007951 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI---VVKVGLRKGS--RSFAEARAAGFTEENGTLGDIY-ETISGSDLVLL 184 (583)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrdsl~~~g~G~---~ViVg~r~~s--~s~~~A~~~G~~~~d~t~~d~~-Eav~~ADIVIL 184 (583)
++|+||| .|..|..+.+-|.+. ++ ++....+..+ +... -.|... .+.+.. +.++++|+||+
T Consensus 2 ~~V~IvGAtG~vG~~l~~lL~~~------~hp~~~l~~l~s~~~~g~~l~---~~g~~i---~v~d~~~~~~~~vDvVf~ 69 (334)
T PRK14874 2 YNVAVVGATGAVGREMLNILEER------NFPVDKLRLLASARSAGKELS---FKGKEL---KVEDLTTFDFSGVDIALF 69 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC------CCCcceEEEEEccccCCCeee---eCCcee---EEeeCCHHHHcCCCEEEE
Confidence 7899999 689999999888876 55 3333333211 1111 012111 022221 33478999999
Q ss_pred eccchHHHHHHHHHHhcCCCCcEEEEecCc
Q 007951 185 LISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 185 avpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
|+|.....++.+.+. +.|..|+|.++-
T Consensus 70 A~g~g~s~~~~~~~~---~~G~~VIDlS~~ 96 (334)
T PRK14874 70 SAGGSVSKKYAPKAA---AAGAVVIDNSSA 96 (334)
T ss_pred CCChHHHHHHHHHHH---hCCCEEEECCch
Confidence 999888877777653 467777777653
No 372
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=89.62 E-value=1.3 Score=47.76 Aligned_cols=88 Identities=11% Similarity=0.115 Sum_probs=53.1
Q ss_pred hhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCC-------------------cccHHHHHH-----
Q 007951 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG-------------------SRSFAEARA----- 159 (583)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~-------------------s~s~~~A~~----- 159 (583)
.+.|++ .+|.|||+|-.|..++++|... |+ ++.+.++.. .+....++.
T Consensus 23 q~~L~~-~~VlivG~GGlGs~~a~~La~~------Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~n 95 (355)
T PRK05597 23 QQSLFD-AKVAVIGAGGLGSPALLYLAGA------GVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALN 95 (355)
T ss_pred HHHHhC-CeEEEECCCHHHHHHHHHHHHc------CCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHC
Confidence 577888 9999999999999999999887 76 444443321 011111111
Q ss_pred cCceec--CCCc--CCHhhhhccCCeEEEeccchHHHHHHHHHH
Q 007951 160 AGFTEE--NGTL--GDIYETISGSDLVLLLISDAAQADNYEKIF 199 (583)
Q Consensus 160 ~G~~~~--d~t~--~d~~Eav~~ADIVILavpd~a~~~Vl~eI~ 199 (583)
-.+... .... .+..+.++++|+||.++-+-....++.+..
T Consensus 96 p~v~v~~~~~~i~~~~~~~~~~~~DvVvd~~d~~~~r~~~n~~c 139 (355)
T PRK05597 96 PDVKVTVSVRRLTWSNALDELRDADVILDGSDNFDTRHLASWAA 139 (355)
T ss_pred CCcEEEEEEeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHH
Confidence 011110 0111 123467899999999987665555666543
No 373
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=89.60 E-value=1.1 Score=47.65 Aligned_cols=85 Identities=18% Similarity=0.241 Sum_probs=55.3
Q ss_pred hcCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecC----CcccHHHH----HHcC--ceecCCCcCCHhhhh
Q 007951 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRK----GSRSFAEA----RAAG--FTEENGTLGDIYETI 176 (583)
Q Consensus 108 l~gikkIgIIG~G-~mG~A~A~nLrdsl~~~g~G~~ViVg~r~----~s~s~~~A----~~~G--~~~~d~t~~d~~Eav 176 (583)
|+| +||++||=| ||+.|+...-..- |.++.+.... ++.-.+.| .+.| +.. +.|+.+++
T Consensus 151 l~g-~k~a~vGDgNNv~nSl~~~~a~~------G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g~~i~~----t~d~~eAv 219 (310)
T COG0078 151 LKG-LKLAYVGDGNNVANSLLLAAAKL------GMDVRIATPKGYEPDPEVVEKAKENAKESGGKITL----TEDPEEAV 219 (310)
T ss_pred ccC-cEEEEEcCcchHHHHHHHHHHHh------CCeEEEECCCcCCcCHHHHHHHHHHHHhcCCeEEE----ecCHHHHh
Confidence 888 999999977 7777777766655 8888887554 33333444 3345 333 56899999
Q ss_pred ccCCeEEEeccchHH--HHHHHHHHhcCC
Q 007951 177 SGSDLVLLLISDAAQ--ADNYEKIFSCMK 203 (583)
Q Consensus 177 ~~ADIVILavpd~a~--~~Vl~eI~~~Lk 203 (583)
++||+|.-=+-...- .+.+++....++
T Consensus 220 ~gADvvyTDvWvSMGee~e~~~~~~~~~~ 248 (310)
T COG0078 220 KGADVVYTDVWVSMGEEAEAEERRIAFLP 248 (310)
T ss_pred CCCCEEEecCcccCcchhhhHHHHHhhCC
Confidence 999999875543322 223444444444
No 374
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=89.36 E-value=5.2 Score=43.22 Aligned_cols=151 Identities=13% Similarity=0.100 Sum_probs=81.9
Q ss_pred CEEEEEc-cchhHHHHHHHHHHhhhhhcCCc--e-EEEEecCCcccHHH-HHHcCceecCCCcCC---HhhhhccCCeEE
Q 007951 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI--V-VKVGLRKGSRSFAE-ARAAGFTEENGTLGD---IYETISGSDLVL 183 (583)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrdsl~~~g~G~--~-ViVg~r~~s~s~~~-A~~~G~~~~d~t~~d---~~Eav~~ADIVI 183 (583)
++|||+| .|..|.-+.+.|.++ .+ . +.+.-...+. -+. ..-.|+.. .+.+ .....++.|++|
T Consensus 2 ~~VavvGATG~VG~~~~~~L~e~------~f~~~~~~~~AS~rSa-G~~~~~f~~~~~---~v~~~~~~~~~~~~~Divf 71 (334)
T COG0136 2 LNVAVLGATGAVGQVLLELLEER------HFPFEELVLLASARSA-GKKYIEFGGKSI---GVPEDAADEFVFSDVDIVF 71 (334)
T ss_pred cEEEEEeccchHHHHHHHHHHhc------CCCcceEEEEeccccc-CCccccccCccc---cCccccccccccccCCEEE
Confidence 6899998 699999999999886 33 2 2222222111 111 11122211 0111 123456899999
Q ss_pred EeccchHHHHHHHHHHhcCCCCcEEEEecCchhhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEE
Q 007951 184 LLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (583)
Q Consensus 184 Lavpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~ali 263 (583)
.+.+.....++.++.. +.|.+|++.++.. ..-+|+++ +.|---.... -.+.. +| .+|
T Consensus 72 ~~ag~~~s~~~~p~~~---~~G~~VIdnsSa~---------Rm~~DVPL--VVPeVN~~~l-~~~~~------rg--~Ii 128 (334)
T COG0136 72 FAAGGSVSKEVEPKAA---EAGCVVIDNSSAF---------RMDPDVPL--VVPEVNPEHL-IDYQK------RG--FII 128 (334)
T ss_pred EeCchHHHHHHHHHHH---HcCCEEEeCCccc---------ccCCCCCE--ecCCcCHHHH-Hhhhh------CC--CEE
Confidence 9999888877777765 4688888887642 21234444 3452222221 11221 34 434
Q ss_pred eecCCCCHHHHHHH-HHHHHHhCCCcccccchhh
Q 007951 264 AVHQDVDGRATNVA-LGWSVALGSPFTFATTLEQ 296 (583)
Q Consensus 264 Av~qd~sgeale~a-~ala~aIG~~~vieTtf~e 296 (583)
+ +.|++-..+-.+ +-|....|..++.-||...
T Consensus 129 a-npNCst~~l~~aL~PL~~~~~i~~v~VsTyQA 161 (334)
T COG0136 129 A-NPNCSTIQLVLALKPLHDAFGIKRVVVSTYQA 161 (334)
T ss_pred E-CCChHHHHHHHHHHHHHhhcCceEEEEEEeeh
Confidence 4 666665544444 3455557765565554443
No 375
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=89.36 E-value=1.5 Score=48.61 Aligned_cols=34 Identities=35% Similarity=0.414 Sum_probs=29.9
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecC
Q 007951 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~ 149 (583)
++ ++|+|||.|..|.+.|..|+.. |++|++..+.
T Consensus 140 ~~-~~V~IIG~GpaGl~aA~~l~~~------G~~V~i~e~~ 173 (467)
T TIGR01318 140 TG-KRVAVIGAGPAGLACADILARA------GVQVVVFDRH 173 (467)
T ss_pred CC-CeEEEECCCHHHHHHHHHHHHc------CCeEEEEecC
Confidence 67 8999999999999999999988 9888776554
No 376
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=89.33 E-value=1.6 Score=38.91 Aligned_cols=82 Identities=23% Similarity=0.287 Sum_probs=47.5
Q ss_pred ccchhHHHHHHHHHHhhhhhcCCceEEEEecCC---cccHHHHHHcCceecCCCcCCHhhhhc--cCCeEEEeccchHHH
Q 007951 118 GWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG---SRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISDAAQA 192 (583)
Q Consensus 118 G~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~---s~s~~~A~~~G~~~~d~t~~d~~Eav~--~ADIVILavpd~a~~ 192 (583)
|+|.+|.+++..|...-.. .+++++...+++ ...+......... +.+.++++. +.|+||=|++++...
T Consensus 1 G~G~VG~~l~~~l~~~~~~--~~~~v~~v~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~dvvVE~t~~~~~~ 73 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQER--IDLEVVGVADRSMLISKDWAASFPDEAF-----TTDLEELIDDPDIDVVVECTSSEAVA 73 (117)
T ss_dssp --SHHHHHHHHHHHHTHHH--CEEEEEEEEESSEEEETTHHHHHTHSCE-----ESSHHHHHTHTT-SEEEE-SSCHHHH
T ss_pred CCCHHHHHHHHHHHhCccc--CCEEEEEEEECCchhhhhhhhhcccccc-----cCCHHHHhcCcCCCEEEECCCchHHH
Confidence 8999999999999876110 134443333322 1222222222222 568888888 899999999988877
Q ss_pred HHHHHHHhcCCCCcEEE
Q 007951 193 DNYEKIFSCMKPNSILG 209 (583)
Q Consensus 193 ~Vl~eI~~~Lk~GaiL~ 209 (583)
+.+.++ |+.|.-|+
T Consensus 74 ~~~~~~---L~~G~~VV 87 (117)
T PF03447_consen 74 EYYEKA---LERGKHVV 87 (117)
T ss_dssp HHHHHH---HHTTCEEE
T ss_pred HHHHHH---HHCCCeEE
Confidence 766654 45666443
No 377
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=89.23 E-value=2.4 Score=41.05 Aligned_cols=30 Identities=27% Similarity=0.304 Sum_probs=24.5
Q ss_pred EEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEec
Q 007951 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLR 148 (583)
Q Consensus 113 kIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r 148 (583)
+|.|||+|.+|..++++|... |+ ++.+.++
T Consensus 1 ~VlViG~GglGs~ia~~La~~------Gvg~i~lvD~ 31 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARS------GVGNLKLVDF 31 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHc------CCCeEEEEeC
Confidence 589999999999999999987 76 4555444
No 378
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=89.18 E-value=2.4 Score=44.38 Aligned_cols=88 Identities=18% Similarity=0.224 Sum_probs=59.0
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCH-hhhhccCCeEEEecc
Q 007951 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI-YETISGSDLVLLLIS 187 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~-~Eav~~ADIVILavp 187 (583)
.| .+|.|+|.|.+|...++-++.. |.+|++..+. ++..+.+++.|... +.+. .+.-+..|+++.++.
T Consensus 165 ~g-~~VlV~G~g~iG~~a~~~a~~~------G~~vi~~~~~-~~~~~~a~~~Ga~~----vi~~~~~~~~~~d~~i~~~~ 232 (329)
T TIGR02822 165 PG-GRLGLYGFGGSAHLTAQVALAQ------GATVHVMTRG-AAARRLALALGAAS----AGGAYDTPPEPLDAAILFAP 232 (329)
T ss_pred CC-CEEEEEcCCHHHHHHHHHHHHC------CCeEEEEeCC-hHHHHHHHHhCCce----eccccccCcccceEEEECCC
Confidence 46 7999999999999888877776 8876655444 44578999999753 2221 111234688887765
Q ss_pred chHHHHHHHHHHhcCCCCcEEEEe
Q 007951 188 DAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 188 d~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
.. ..+....+.+++|-.++..
T Consensus 233 ~~---~~~~~~~~~l~~~G~~v~~ 253 (329)
T TIGR02822 233 AG---GLVPPALEALDRGGVLAVA 253 (329)
T ss_pred cH---HHHHHHHHhhCCCcEEEEE
Confidence 43 3566666778887765443
No 379
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=89.17 E-value=1.9 Score=45.08 Aligned_cols=119 Identities=15% Similarity=0.216 Sum_probs=71.0
Q ss_pred CEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCcc-cH-H---HH---HHcCceecCCCcCCHhhhhccCCeE
Q 007951 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SF-A---EA---RAAGFTEENGTLGDIYETISGSDLV 182 (583)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~-s~-~---~A---~~~G~~~~d~t~~d~~Eav~~ADIV 182 (583)
+||+|+|+ |.||..+.+.+... .++++..+...... +. . .+ ...|+.. ..+......++|++
T Consensus 3 iki~V~Ga~GRMG~~ii~~v~~~-----~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~v----~~~~~~~~~~~DV~ 73 (266)
T COG0289 3 IKVAVAGASGRMGRTLIRAVLEA-----PDLELVAAFDRPGSLSLGSDAGELAGLGLLGVPV----TDDLLLVKADADVL 73 (266)
T ss_pred ceEEEEcCCChHHHHHHHHHhcC-----CCceEEEEEecCCccccccchhhhccccccCcee----ecchhhcccCCCEE
Confidence 78999998 99999999999876 14565555443321 11 1 11 1122222 23456677899999
Q ss_pred EEeccchHHHHHHHHHHhcCCCCcEEEEecCchhhhhhcccccCCCCccEEEeccCCCchh
Q 007951 183 LLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPS 243 (583)
Q Consensus 183 ILavpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~ 243 (583)
|=-+-|+...+.++....+ +-.+|+=..||+-..++. .-...+.+.+| .+||+.--+
T Consensus 74 IDFT~P~~~~~~l~~~~~~--~~~lVIGTTGf~~e~~~~-l~~~a~~v~vv-~a~NfSiGv 130 (266)
T COG0289 74 IDFTTPEATLENLEFALEH--GKPLVIGTTGFTEEQLEK-LREAAEKVPVV-IAPNFSLGV 130 (266)
T ss_pred EECCCchhhHHHHHHHHHc--CCCeEEECCCCCHHHHHH-HHHHHhhCCEE-EeccchHHH
Confidence 9999998887777754332 122566678887333321 01122345555 678775433
No 380
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=89.16 E-value=0.75 Score=49.45 Aligned_cols=90 Identities=18% Similarity=0.158 Sum_probs=54.7
Q ss_pred CEEEEEcc-chhHHHHHHHHHHh-hhhhcCCceEEEEecC--CcccHHHHHHcCceecCCCcCCHhhh-hccCCeEEEec
Q 007951 112 NQIGVIGW-GSQGPAQAQNLRDS-LAEAKSDIVVKVGLRK--GSRSFAEARAAGFTEENGTLGDIYET-ISGSDLVLLLI 186 (583)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrds-l~~~g~G~~ViVg~r~--~s~s~~~A~~~G~~~~d~t~~d~~Ea-v~~ADIVILav 186 (583)
.+|+|||. |..|.-+.+-|.++ ++ ..++...... ..+.....-. ... +.+.++. ..++|+||+++
T Consensus 5 ~~vaIvGATG~vG~ellrlL~~~~hP----~~~l~~laS~~saG~~~~~~~~-~~~-----v~~~~~~~~~~~Dvvf~a~ 74 (336)
T PRK08040 5 WNIALLGATGAVGEALLELLAERQFP----VGELYALASEESAGETLRFGGK-SVT-----VQDAAEFDWSQAQLAFFVA 74 (336)
T ss_pred CEEEEEccCCHHHHHHHHHHhcCCCC----ceEEEEEEccCcCCceEEECCc-ceE-----EEeCchhhccCCCEEEECC
Confidence 78999996 99999999888764 11 1243332221 1122211000 111 2233333 26899999999
Q ss_pred cchHHHHHHHHHHhcCCCCcEEEEecCc
Q 007951 187 SDAAQADNYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 187 pd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
|.....++.+++. +.|..|+|.++-
T Consensus 75 p~~~s~~~~~~~~---~~g~~VIDlS~~ 99 (336)
T PRK08040 75 GREASAAYAEEAT---NAGCLVIDSSGL 99 (336)
T ss_pred CHHHHHHHHHHHH---HCCCEEEECChH
Confidence 9987777777654 368888888764
No 381
>CHL00194 ycf39 Ycf39; Provisional
Probab=89.14 E-value=0.77 Score=47.61 Aligned_cols=69 Identities=17% Similarity=0.184 Sum_probs=46.6
Q ss_pred CEEEEEc-cchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcC---CHhhhhccCCeEEEecc
Q 007951 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG---DIYETISGSDLVLLLIS 187 (583)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~---d~~Eav~~ADIVILavp 187 (583)
|||.|+| .|.+|..++..|.+. |++|++..|..++. ......|+....+.+. +..++++++|+||.++.
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~------g~~V~~l~R~~~~~-~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~ 73 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDE------GYQVRCLVRNLRKA-SFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST 73 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHC------CCeEEEEEcChHHh-hhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence 5899999 599999999999998 99988777764322 1112234432111122 34567889999998764
No 382
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=89.04 E-value=1.6 Score=47.47 Aligned_cols=88 Identities=18% Similarity=0.152 Sum_probs=55.0
Q ss_pred hhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCC-------------------cccHHHHH---Hc-
Q 007951 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG-------------------SRSFAEAR---AA- 160 (583)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~-------------------s~s~~~A~---~~- 160 (583)
.+.|++ .+|.|||+|-.|..++.+|... |+ ++.+.++.. .+....+. +.
T Consensus 36 q~~l~~-~~VliiG~GglG~~v~~~La~~------Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~n 108 (370)
T PRK05600 36 QERLHN-ARVLVIGAGGLGCPAMQSLASA------GVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQ 108 (370)
T ss_pred HHHhcC-CcEEEECCCHHHHHHHHHHHHc------CCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHC
Confidence 577888 9999999999999999999987 76 444444320 01111011 11
Q ss_pred -Cce--ecCCCc--CCHhhhhccCCeEEEeccchHHHHHHHHHH
Q 007951 161 -GFT--EENGTL--GDIYETISGSDLVLLLISDAAQADNYEKIF 199 (583)
Q Consensus 161 -G~~--~~d~t~--~d~~Eav~~ADIVILavpd~a~~~Vl~eI~ 199 (583)
.+. .....+ .+..+.++++|+||-|+-.-....++.++.
T Consensus 109 p~v~i~~~~~~i~~~~~~~~~~~~DlVid~~Dn~~~r~~in~~~ 152 (370)
T PRK05600 109 PDIRVNALRERLTAENAVELLNGVDLVLDGSDSFATKFLVADAA 152 (370)
T ss_pred CCCeeEEeeeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHH
Confidence 111 101111 124467889999999988877766777654
No 383
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=89.01 E-value=1.6 Score=50.37 Aligned_cols=34 Identities=29% Similarity=0.355 Sum_probs=30.4
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecC
Q 007951 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~ 149 (583)
++ ++|+|||.|..|.+.|..|++. |++|++..+.
T Consensus 309 ~~-kkVaIIG~GpaGl~aA~~L~~~------G~~Vtv~e~~ 342 (639)
T PRK12809 309 RS-EKVAVIGAGPAGLGCADILARA------GVQVDVFDRH 342 (639)
T ss_pred CC-CEEEEECcCHHHHHHHHHHHHc------CCcEEEEeCC
Confidence 57 9999999999999999999988 9988877654
No 384
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=88.94 E-value=1.2 Score=47.78 Aligned_cols=70 Identities=19% Similarity=0.149 Sum_probs=48.7
Q ss_pred hhcCCCEEEEEccc--hhHHHHHHHHHHhhhhhcCCceEEEEecCC----cccHH----HHHHcCceecCCCcCCHhhhh
Q 007951 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFA----EARAAGFTEENGTLGDIYETI 176 (583)
Q Consensus 107 ~l~gikkIgIIG~G--~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~----s~s~~----~A~~~G~~~~d~t~~d~~Eav 176 (583)
.++| .||++||-+ ++..|++..+..- |.++.+..... +...+ .+.+.|.... ...++++++
T Consensus 152 ~l~g-~kia~vGD~~~~v~~Sl~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~--~~~d~~ea~ 222 (332)
T PRK04284 152 PYKD-IKFTYVGDGRNNVANALMQGAAIM------GMDFHLVCPKELNPDDELLNKCKEIAAETGGKIT--ITDDIDEGV 222 (332)
T ss_pred CcCC-cEEEEecCCCcchHHHHHHHHHHc------CCEEEEECCccccCCHHHHHHHHHHHHHcCCeEE--EEcCHHHHh
Confidence 3678 999999975 7888888888776 88877765432 12222 2334563210 156899999
Q ss_pred ccCCeEEEe
Q 007951 177 SGSDLVLLL 185 (583)
Q Consensus 177 ~~ADIVILa 185 (583)
++||+|...
T Consensus 223 ~~aDvvy~~ 231 (332)
T PRK04284 223 KGSDVIYTD 231 (332)
T ss_pred CCCCEEEEC
Confidence 999999985
No 385
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=88.85 E-value=1.5 Score=46.56 Aligned_cols=69 Identities=14% Similarity=0.099 Sum_probs=49.2
Q ss_pred hhcCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCcc--cH----HHHHHcC-ceecCCCcCCHhhhhcc
Q 007951 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR--SF----AEARAAG-FTEENGTLGDIYETISG 178 (583)
Q Consensus 107 ~l~gikkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~--s~----~~A~~~G-~~~~d~t~~d~~Eav~~ 178 (583)
.++| +||++||- +++..|++..+..- |.++.+.-.+.-. .. +.+.+.| +.. ..+.++++++
T Consensus 150 ~l~g-~~va~vGd~~rv~~Sl~~~~~~~------G~~v~~~~P~~~~~~~~~~~~~~~~~~g~i~~----~~d~~~av~~ 218 (311)
T PRK14804 150 PLNQ-KQLTYIGVHNNVVNSLIGITAAL------GIHLTLVTPIAAKENIHAQTVERAKKKGTLSW----EMNLHKAVSH 218 (311)
T ss_pred CCCC-CEEEEECCCCcHHHHHHHHHHHc------CCEEEEECCCCccHHHHHHHHHHHHhcCCeEE----EeCHHHHhCC
Confidence 3688 99999997 68999999988876 8888776654311 11 2233444 232 4688999999
Q ss_pred CCeEEEec
Q 007951 179 SDLVLLLI 186 (583)
Q Consensus 179 ADIVILav 186 (583)
||+|..-+
T Consensus 219 aDvvy~d~ 226 (311)
T PRK14804 219 ADYVYTDT 226 (311)
T ss_pred CCEEEeee
Confidence 99999844
No 386
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=88.81 E-value=2.2 Score=44.05 Aligned_cols=91 Identities=21% Similarity=0.262 Sum_probs=61.6
Q ss_pred hcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHH----HcCceecCCCcCCHhhhhc---cCC
Q 007951 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR----AAGFTEENGTLGDIYETIS---GSD 180 (583)
Q Consensus 108 l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~----~~G~~~~d~t~~d~~Eav~---~AD 180 (583)
|.| ++|-=|||| |+.++.-|... |.+| .|.+-.++..+.|+ +.|+.. +-...+.+|+.. .-|
T Consensus 58 l~g-~~vLDvGCG--gG~Lse~mAr~------Ga~V-tgiD~se~~I~~Ak~ha~e~gv~i-~y~~~~~edl~~~~~~FD 126 (243)
T COG2227 58 LPG-LRVLDVGCG--GGILSEPLARL------GASV-TGIDASEKPIEVAKLHALESGVNI-DYRQATVEDLASAGGQFD 126 (243)
T ss_pred CCC-CeEEEecCC--ccHhhHHHHHC------CCee-EEecCChHHHHHHHHhhhhccccc-cchhhhHHHHHhcCCCcc
Confidence 788 999999998 45666666665 8775 57777777776666 445442 112345566655 578
Q ss_pred eEEE-----eccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 181 LVLL-----LISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 181 IVIL-----avpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
+|+. .+|+... ++......+|||-++.++
T Consensus 127 vV~cmEVlEHv~dp~~--~~~~c~~lvkP~G~lf~S 160 (243)
T COG2227 127 VVTCMEVLEHVPDPES--FLRACAKLVKPGGILFLS 160 (243)
T ss_pred EEEEhhHHHccCCHHH--HHHHHHHHcCCCcEEEEe
Confidence 8876 3554433 777888899999877666
No 387
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=88.67 E-value=1.4 Score=47.39 Aligned_cols=71 Identities=17% Similarity=0.164 Sum_probs=48.8
Q ss_pred hhcCCCEEEEEccc--hhHHHHHHHHHHhhhhhcCCceEEEEecCC----cccHH----HHHHcCceecCCCcCCHhhhh
Q 007951 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFA----EARAAGFTEENGTLGDIYETI 176 (583)
Q Consensus 107 ~l~gikkIgIIG~G--~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~----s~s~~----~A~~~G~~~~d~t~~d~~Eav 176 (583)
.++| .||++||-+ ++..+++..+..- |.++.+.-... ....+ .+.+.|.... ...++++++
T Consensus 153 ~l~g-l~va~vGD~~~~v~~S~~~~~~~~------G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~--~~~d~~~a~ 223 (334)
T PRK12562 153 AFNE-MTLVYAGDARNNMGNSMLEAAALT------GLDLRLVAPQACWPEASLVAECSALAQKHGGKIT--LTEDIAAGV 223 (334)
T ss_pred CcCC-cEEEEECCCCCCHHHHHHHHHHHc------CCEEEEECCcccCCcHHHHHHHHHHHHHcCCeEE--EEcCHHHHh
Confidence 3678 999999976 7889998888776 88877665432 11222 2344453210 146889999
Q ss_pred ccCCeEEEec
Q 007951 177 SGSDLVLLLI 186 (583)
Q Consensus 177 ~~ADIVILav 186 (583)
+++|+|....
T Consensus 224 ~~aDvvyt~~ 233 (334)
T PRK12562 224 KGADFIYTDV 233 (334)
T ss_pred CCCCEEEEcC
Confidence 9999999864
No 388
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.59 E-value=1.2 Score=47.35 Aligned_cols=78 Identities=12% Similarity=0.162 Sum_probs=54.0
Q ss_pred hhcCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 107 ~l~gikkIgIIG~G-~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
.++| |+|.|||-+ ..|..++.-|.+. .++.+..|.+.... +.++.+.+++||+||.+
T Consensus 158 ~l~G-k~vvViGrS~iVGkPla~lL~~~--~~~~~atVtv~hs~-------------------T~~l~~~~~~ADIvVsA 215 (297)
T PRK14168 158 ETSG-AEVVVVGRSNIVGKPIANMMTQK--GPGANATVTIVHTR-------------------SKNLARHCQRADILIVA 215 (297)
T ss_pred CCCC-CEEEEECCCCcccHHHHHHHHhc--ccCCCCEEEEecCC-------------------CcCHHHHHhhCCEEEEe
Confidence 5788 999999966 7899999988765 00002355553221 23567888999999999
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
+.-... +. .+.+|+|++|+|+
T Consensus 216 vGkp~~---i~--~~~ik~gavVIDv 236 (297)
T PRK14168 216 AGVPNL---VK--PEWIKPGATVIDV 236 (297)
T ss_pred cCCcCc---cC--HHHcCCCCEEEec
Confidence 874332 22 3457999998886
No 389
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=88.56 E-value=2.9 Score=44.35 Aligned_cols=91 Identities=18% Similarity=0.179 Sum_probs=56.1
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceec-CCC-cCCHhhhhccCCeEEEec
Q 007951 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGT-LGDIYETISGSDLVLLLI 186 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~-d~t-~~d~~Eav~~ADIVILav 186 (583)
.| ++|.|+|.|.+|...++-++.. |.++++.....++..+.+++.|...- +.. .....+.....|+||-++
T Consensus 183 ~g-~~VlV~G~G~vG~~avq~Ak~~------Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~~ 255 (360)
T PLN02586 183 PG-KHLGVAGLGGLGHVAVKIGKAF------GLKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDTV 255 (360)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEECC
Confidence 46 8999999999999999988887 88776655554454556667786320 000 001222233578988887
Q ss_pred cchHHHHHHHHHHhcCCCCcEEE
Q 007951 187 SDAAQADNYEKIFSCMKPNSILG 209 (583)
Q Consensus 187 pd~a~~~Vl~eI~~~Lk~GaiL~ 209 (583)
.... .+++....+++|-.++
T Consensus 256 g~~~---~~~~~~~~l~~~G~iv 275 (360)
T PLN02586 256 SAVH---ALGPLLGLLKVNGKLI 275 (360)
T ss_pred CCHH---HHHHHHHHhcCCcEEE
Confidence 6322 3344445566665544
No 390
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=88.48 E-value=6 Score=43.27 Aligned_cols=167 Identities=16% Similarity=0.202 Sum_probs=88.0
Q ss_pred CEEEEEcc-chhHHHHHH-HHHHhhhhhcCCce---EEEEecCCcccHHHHHHcCceecCCCcCC--HhhhhccCCeEEE
Q 007951 112 NQIGVIGW-GSQGPAQAQ-NLRDSLAEAKSDIV---VKVGLRKGSRSFAEARAAGFTEENGTLGD--IYETISGSDLVLL 184 (583)
Q Consensus 112 kkIgIIG~-G~mG~A~A~-nLrdsl~~~g~G~~---ViVg~r~~s~s~~~A~~~G~~~~d~t~~d--~~Eav~~ADIVIL 184 (583)
++|||||. |..|.-+.+ -|.+. .+. +.. ..+. ++-..-. .+......+.+ ..+..+++|+||+
T Consensus 2 ~~VAIVGATG~vG~ell~llL~~~------~f~~~~l~~-~ss~-~sg~~~~--~f~g~~~~v~~~~~~~~~~~~Divf~ 71 (369)
T PRK06598 2 KKVGFVGWRGMVGSVLMQRMVEEN------DFDLIEPVF-FSTS-QAGGAAP--SFGGKEGTLQDAFDIDALKKLDIIIT 71 (369)
T ss_pred eEEEEEeCCCHHHHHHHHHHHhCC------CCCcCcEEE-ecch-hhCCccc--ccCCCcceEEecCChhHhcCCCEEEE
Confidence 68999996 999999997 55544 443 433 2221 1111111 11100001111 1234578999999
Q ss_pred eccchHHHHHHHHHHhcCCCC--cEEEEecCchhhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEE
Q 007951 185 LISDAAQADNYEKIFSCMKPN--SILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSS 262 (583)
Q Consensus 185 avpd~a~~~Vl~eI~~~Lk~G--aiL~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~al 262 (583)
++|.....++.+++.. .| .+|+|.++.- ...+ +|..+-|---...++..-. .|...
T Consensus 72 a~~~~~s~~~~~~~~~---aG~~~~VID~Ss~f---------R~~~--dvplvvPEvN~e~i~~~~~-------~g~~i- 129 (369)
T PRK06598 72 CQGGDYTNEVYPKLRA---AGWQGYWIDAASTL---------RMKD--DAIIILDPVNRDVIDDALA-------NGVKT- 129 (369)
T ss_pred CCCHHHHHHHHHHHHh---CCCCeEEEECChHH---------hCCC--CCcEEcCCcCHHHHHhhhh-------cCCCE-
Confidence 9999877777776543 57 5688887642 1122 4555556444333322001 23333
Q ss_pred EeecCCCCHHHHHHHHHHHHHhCCC-cccccchhhhhhhhhhhhhhhHhhHHHHHHHHHHHH
Q 007951 263 FAVHQDVDGRATNVALGWSVALGSP-FTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRR 323 (583)
Q Consensus 263 iAv~qd~sgeale~a~ala~aIG~~-~vieTtf~eE~~sDlfgeqtvLsG~~pAlieAl~d~ 323 (583)
|+ +++++.-++-++++=+...|.. +++-+ ....+||++...++.+.+.
T Consensus 130 Ia-nPnC~tt~~~laL~PL~~~~~i~~viVs------------t~qavSGAG~~g~~eL~~q 178 (369)
T PRK06598 130 FV-GGNCTVSLMLMALGGLFKNDLVEWVSVM------------TYQAASGAGARNMRELLTQ 178 (369)
T ss_pred EE-cCChHHHHHHHHHHHHHhcCCceEEEEE------------eeecccccCHHHHHHHHHH
Confidence 34 5555655655555545555532 23322 2234788887766665544
No 391
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=88.36 E-value=2.4 Score=46.17 Aligned_cols=88 Identities=19% Similarity=0.246 Sum_probs=60.9
Q ss_pred hcCCCEEEEEcc----------chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhc
Q 007951 108 FNGINQIGVIGW----------GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS 177 (583)
Q Consensus 108 l~gikkIgIIG~----------G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~ 177 (583)
++| ++|+|.|+ .+-...++..|.+. |.+|.+.+..-.. ... ...+. +.+..++++
T Consensus 311 ~~~-~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~------g~~v~~~DP~~~~-~~~-~~~~~------~~~~~~~~~ 375 (411)
T TIGR03026 311 LKG-KTVLILGLAFKPNTDDVRESPALDIIELLKEK------GAKVKAYDPLVPE-EEV-KGLPL------IDDLEEALK 375 (411)
T ss_pred ccC-CEEEEEeeEecCCCCccccChHHHHHHHHHhC------CCEEEEECCCCCh-hhh-hhccc------CCCHHHHHh
Confidence 678 99999998 45677788888887 9998877654222 111 11111 357789999
Q ss_pred cCCeEEEeccchHHHH-HHHHHHhcCCCCcEEEEe
Q 007951 178 GSDLVLLLISDAAQAD-NYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 178 ~ADIVILavpd~a~~~-Vl~eI~~~Lk~GaiL~~a 211 (583)
+||+|++++.-....+ -++.+...+++ .+|+|.
T Consensus 376 ~ad~~v~~t~~~~~~~~~~~~~~~~~~~-~~v~D~ 409 (411)
T TIGR03026 376 GADALVILTDHDEFKDLDLEKIKDLMKG-KVVVDT 409 (411)
T ss_pred CCCEEEEecCCHHHhccCHHHHHHhcCC-CEEEeC
Confidence 9999999999887765 35567666653 356553
No 392
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=88.33 E-value=1.7 Score=46.51 Aligned_cols=94 Identities=15% Similarity=0.119 Sum_probs=54.2
Q ss_pred CEEEEEc-cchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHH-HHHHcCcee--------cCCCc--CCHhhhhccC
Q 007951 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA-EARAAGFTE--------ENGTL--GDIYETISGS 179 (583)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~-~A~~~G~~~--------~d~t~--~d~~Eav~~A 179 (583)
+||+|+| .|.+|..+.+.|.+. ...+++...+..+..-+ .....++.. .+-.+ .+. +.+.++
T Consensus 4 ~~V~I~GatG~iG~~l~~~L~~~-----p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~ 77 (349)
T PRK08664 4 LKVGILGATGMVGQRFVQLLANH-----PWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDP-EAVDDV 77 (349)
T ss_pred cEEEEECCCCHHHHHHHHHHHcC-----CCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCH-HHhcCC
Confidence 6899998 899999999988865 12354433233211110 110011100 00001 133 445789
Q ss_pred CeEEEeccchHHHHHHHHHHhcCCCCcEEEEecCc
Q 007951 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 180 DIVILavpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
|+|++++|.....++.+.+. +.|..+++.+|-
T Consensus 78 DvVf~a~p~~~s~~~~~~~~---~~G~~vIDls~~ 109 (349)
T PRK08664 78 DIVFSALPSDVAGEVEEEFA---KAGKPVFSNASA 109 (349)
T ss_pred CEEEEeCChhHHHHHHHHHH---HCCCEEEECCch
Confidence 99999999987777766543 357767777663
No 393
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=88.32 E-value=1.8 Score=45.59 Aligned_cols=66 Identities=21% Similarity=0.242 Sum_probs=39.4
Q ss_pred EEccchhHHHHHHHHHHhhhhhcCCc--eEEEEecCCcccHHHHHH--cC--ceecCCC-cCCHhhhhccCCeEEEecc
Q 007951 116 VIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA--AG--FTEENGT-LGDIYETISGSDLVLLLIS 187 (583)
Q Consensus 116 IIG~G~mG~A~A~nLrdsl~~~g~G~--~ViVg~r~~s~s~~~A~~--~G--~~~~d~t-~~d~~Eav~~ADIVILavp 187 (583)
|||.|.+|.++|..|... ++ ++++.+...++....+.+ +. +...+.. ..+..+.+++||+||++.-
T Consensus 1 iIGaG~VG~~~a~~l~~~------~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDivVitag 73 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQ------GIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKDADLVVITAG 73 (299)
T ss_pred CCCcCHHHHHHHHHHHhc------CCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCCCCEEEECCC
Confidence 799999999999999876 65 565555443332322221 11 1000000 1233578899999999654
No 394
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=88.23 E-value=3.2 Score=43.95 Aligned_cols=70 Identities=19% Similarity=0.211 Sum_probs=49.5
Q ss_pred hhcCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCc----ccHHH-HHHcCceecCCCcCCHhhhhccCC
Q 007951 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSFAE-ARAAGFTEENGTLGDIYETISGSD 180 (583)
Q Consensus 107 ~l~gikkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s----~s~~~-A~~~G~~~~d~t~~d~~Eav~~AD 180 (583)
.++| .||++||- ++...+++..+..- |.++.+.....- ...+. +++.|.... ...+.+++++++|
T Consensus 149 ~l~g-l~i~~vGd~~~v~~Sl~~~l~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~--~~~d~~~a~~~aD 219 (304)
T PRK00779 149 SLKG-LKVAWVGDGNNVANSLLLAAALL------GFDLRVATPKGYEPDPEIVEKIAKETGASIE--VTHDPKEAVKGAD 219 (304)
T ss_pred CcCC-cEEEEEeCCCccHHHHHHHHHHc------CCEEEEECCcccCCCHHHHHHHHHHcCCeEE--EEcCHHHHhCCCC
Confidence 3678 89999997 78899999988876 888777654321 11121 555674320 1468899999999
Q ss_pred eEEEe
Q 007951 181 LVLLL 185 (583)
Q Consensus 181 IVILa 185 (583)
+|...
T Consensus 220 vvy~~ 224 (304)
T PRK00779 220 VVYTD 224 (304)
T ss_pred EEEec
Confidence 99985
No 395
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=88.19 E-value=2 Score=43.57 Aligned_cols=90 Identities=18% Similarity=0.135 Sum_probs=56.6
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHc----CceecCCCcCCHhhhhccCCeEEE
Q 007951 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----GFTEENGTLGDIYETISGSDLVLL 184 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~----G~~~~d~t~~d~~Eav~~ADIVIL 184 (583)
.+ ++|.-||+|+ | .++..+... |...+++.+.++...+.|++. ++.. .....+.-...|+|+.
T Consensus 119 ~~-~~VLDiGcGs-G-~l~i~~~~~------g~~~v~giDis~~~l~~A~~n~~~~~~~~----~~~~~~~~~~fD~Vva 185 (250)
T PRK00517 119 PG-KTVLDVGCGS-G-ILAIAAAKL------GAKKVLAVDIDPQAVEAARENAELNGVEL----NVYLPQGDLKADVIVA 185 (250)
T ss_pred CC-CEEEEeCCcH-H-HHHHHHHHc------CCCeEEEEECCHHHHHHHHHHHHHcCCCc----eEEEccCCCCcCEEEE
Confidence 56 8999999999 5 344455555 554356777776666555543 3310 0000000014799887
Q ss_pred eccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 185 LISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 185 avpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
-+....+..+++++...|+||..++++
T Consensus 186 ni~~~~~~~l~~~~~~~LkpgG~lils 212 (250)
T PRK00517 186 NILANPLLELAPDLARLLKPGGRLILS 212 (250)
T ss_pred cCcHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 666666677888999999999877654
No 396
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=88.10 E-value=1.3 Score=47.82 Aligned_cols=89 Identities=11% Similarity=0.137 Sum_probs=55.2
Q ss_pred CEEEEEcc-chhHHHHHHHHHH-hhhhhcCCce---EEEEec--CCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 007951 112 NQIGVIGW-GSQGPAQAQNLRD-SLAEAKSDIV---VKVGLR--KGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (583)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrd-sl~~~g~G~~---ViVg~r--~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVIL 184 (583)
.+|||||. |..|.-+.+-|.+ . .++ +..... ...+......+ ..... -.+.. ..++.|+||+
T Consensus 6 ~~VaIvGATG~vG~ell~lL~~h~------~f~v~~l~~~aS~~saGk~~~~~~~-~l~v~---~~~~~-~~~~~Divf~ 74 (347)
T PRK06728 6 YHVAVVGATGAVGQKIIELLEKET------KFNIAEVTLLSSKRSAGKTVQFKGR-EIIIQ---EAKIN-SFEGVDIAFF 74 (347)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHCC------CCCcccEEEEECcccCCCCeeeCCc-ceEEE---eCCHH-HhcCCCEEEE
Confidence 68999996 9999999998874 4 443 322222 22222211111 11110 12333 3478999999
Q ss_pred eccchHHHHHHHHHHhcCCCCcEEEEecCc
Q 007951 185 LISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 185 avpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
++|.....++.++.. +.|..|+|.++.
T Consensus 75 a~~~~~s~~~~~~~~---~~G~~VID~Ss~ 101 (347)
T PRK06728 75 SAGGEVSRQFVNQAV---SSGAIVIDNTSE 101 (347)
T ss_pred CCChHHHHHHHHHHH---HCCCEEEECchh
Confidence 999987777777653 468888888764
No 397
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=87.99 E-value=1.2 Score=50.44 Aligned_cols=75 Identities=19% Similarity=0.184 Sum_probs=49.7
Q ss_pred hhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCC--------------------cccHHHHHHcCceec-
Q 007951 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG--------------------SRSFAEARAAGFTEE- 165 (583)
Q Consensus 107 ~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~--------------------s~s~~~A~~~G~~~~- 165 (583)
.-.| ++|+|||.|..|.+.|..|++. |++|++..+.. ....+.+.+.|+...
T Consensus 134 ~~~g-~~V~VIGaGpaGL~aA~~l~~~------G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~ 206 (564)
T PRK12771 134 PDTG-KRVAVIGGGPAGLSAAYHLRRM------GHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRL 206 (564)
T ss_pred CCCC-CEEEEECCCHHHHHHHHHHHHC------CCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEe
Confidence 4567 9999999999999999999988 98887765321 123456677786421
Q ss_pred CCCc-C--CHhhhhccCCeEEEeccc
Q 007951 166 NGTL-G--DIYETISGSDLVLLLISD 188 (583)
Q Consensus 166 d~t~-~--d~~Eav~~ADIVILavpd 188 (583)
+... . +..+.-...|.||+++-.
T Consensus 207 ~~~~~~~~~~~~~~~~~D~Vi~AtG~ 232 (564)
T PRK12771 207 GVRVGEDITLEQLEGEFDAVFVAIGA 232 (564)
T ss_pred CCEECCcCCHHHHHhhCCEEEEeeCC
Confidence 1111 1 122333457888888763
No 398
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=87.96 E-value=1.6 Score=46.84 Aligned_cols=70 Identities=17% Similarity=0.108 Sum_probs=47.9
Q ss_pred hhcCCCEEEEEccc--hhHHHHHHHHHHhhhhhcCCceEEEEecCC----cccH----HHHHHcCceecCCCcCCHhhhh
Q 007951 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSF----AEARAAGFTEENGTLGDIYETI 176 (583)
Q Consensus 107 ~l~gikkIgIIG~G--~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~----s~s~----~~A~~~G~~~~d~t~~d~~Eav 176 (583)
.++| .||++||-+ ++..|++..+..- |.++.+..... +... +.+.+.|.... ...++.+++
T Consensus 153 ~l~g-l~ia~vGD~~~~v~~Sl~~~~~~~------g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~--~~~d~~~a~ 223 (334)
T PRK01713 153 PLSE-ISYVYIGDARNNMGNSLLLIGAKL------GMDVRICAPKALLPEASLVEMCEKFAKESGARIT--VTDDIDKAV 223 (334)
T ss_pred CcCC-cEEEEECCCccCHHHHHHHHHHHc------CCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEE--EEcCHHHHh
Confidence 3678 899999986 6788888888776 88877765432 1111 22344563210 157899999
Q ss_pred ccCCeEEEe
Q 007951 177 SGSDLVLLL 185 (583)
Q Consensus 177 ~~ADIVILa 185 (583)
++||+|..-
T Consensus 224 ~~aDvVyt~ 232 (334)
T PRK01713 224 KGVDFVHTD 232 (334)
T ss_pred CCCCEEEEc
Confidence 999999974
No 399
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.87 E-value=1.5 Score=48.70 Aligned_cols=68 Identities=18% Similarity=0.256 Sum_probs=45.0
Q ss_pred hcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccH---HHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 007951 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF---AEARAAGFTEENGTLGDIYETISGSDLVLL 184 (583)
Q Consensus 108 l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~---~~A~~~G~~~~d~t~~d~~Eav~~ADIVIL 184 (583)
++| ++|+|+|+|.-|.+.++-|++. |.+|++.+.+..... ...++.+... . .....+.+.++|+||.
T Consensus 6 ~~~-~~v~v~G~G~sG~~~~~~l~~~------g~~v~~~d~~~~~~~~~~~~l~~~~~~~-~--~~~~~~~~~~~d~vV~ 75 (468)
T PRK04690 6 LEG-RRVALWGWGREGRAAYRALRAH------LPAQALTLFCNAVEAREVGALADAALLV-E--TEASAQRLAAFDVVVK 75 (468)
T ss_pred cCC-CEEEEEccchhhHHHHHHHHHc------CCEEEEEcCCCcccchHHHHHhhcCEEE-e--CCCChHHccCCCEEEE
Confidence 568 9999999999999999999998 999888764322111 1222222221 1 1122456678999988
Q ss_pred e
Q 007951 185 L 185 (583)
Q Consensus 185 a 185 (583)
.
T Consensus 76 S 76 (468)
T PRK04690 76 S 76 (468)
T ss_pred C
Confidence 4
No 400
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=87.80 E-value=2.2 Score=46.61 Aligned_cols=28 Identities=21% Similarity=0.310 Sum_probs=25.6
Q ss_pred hhhhcCCCEEEEEccchhHHHHHHHHHHh
Q 007951 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDS 133 (583)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~A~A~nLrds 133 (583)
.+.|+. .+|.|||+|-.|..++++|..+
T Consensus 37 q~~L~~-~~VlviG~GGlGs~va~~La~~ 64 (392)
T PRK07878 37 QKRLKN-ARVLVIGAGGLGSPTLLYLAAA 64 (392)
T ss_pred HHHHhc-CCEEEECCCHHHHHHHHHHHHc
Confidence 467788 8999999999999999999987
No 401
>PRK08223 hypothetical protein; Validated
Probab=87.40 E-value=3.1 Score=43.98 Aligned_cols=28 Identities=14% Similarity=0.318 Sum_probs=26.0
Q ss_pred hhhhcCCCEEEEEccchhHHHHHHHHHHh
Q 007951 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDS 133 (583)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~A~A~nLrds 133 (583)
.+.|+. .+|.|||+|-.|..++++|..+
T Consensus 22 Q~kL~~-s~VlIvG~GGLGs~va~~LA~a 49 (287)
T PRK08223 22 QQRLRN-SRVAIAGLGGVGGIHLLTLARL 49 (287)
T ss_pred HHHHhc-CCEEEECCCHHHHHHHHHHHHh
Confidence 577888 9999999999999999999988
No 402
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=87.39 E-value=3.6 Score=43.23 Aligned_cols=90 Identities=22% Similarity=0.247 Sum_probs=55.1
Q ss_pred cCCCEEEEEccchhHHHHHHHHHH-hhhhhcCC-ceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEec
Q 007951 109 NGINQIGVIGWGSQGPAQAQNLRD-SLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A~A~nLrd-sl~~~g~G-~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILav 186 (583)
.| .++.|+|.|.+|...++-++. . | .+|++..+. +...+.+++.|... ...+..+.. ..|+||=++
T Consensus 163 ~g-~~VlV~G~G~vGl~~~~~a~~~~------g~~~vi~~~~~-~~k~~~a~~~~~~~---~~~~~~~~~-g~d~viD~~ 230 (341)
T cd08237 163 DR-NVIGVWGDGNLGYITALLLKQIY------PESKLVVFGKH-QEKLDLFSFADETY---LIDDIPEDL-AVDHAFECV 230 (341)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHhc------CCCcEEEEeCc-HhHHHHHhhcCcee---ehhhhhhcc-CCcEEEECC
Confidence 35 799999999999988877775 3 3 355554443 44566676655431 011111111 479999888
Q ss_pred cchHHHHHHHHHHhcCCCCcEEEE
Q 007951 187 SDAAQADNYEKIFSCMKPNSILGL 210 (583)
Q Consensus 187 pd~a~~~Vl~eI~~~Lk~GaiL~~ 210 (583)
........+++....+++|-.++.
T Consensus 231 G~~~~~~~~~~~~~~l~~~G~iv~ 254 (341)
T cd08237 231 GGRGSQSAINQIIDYIRPQGTIGL 254 (341)
T ss_pred CCCccHHHHHHHHHhCcCCcEEEE
Confidence 743334456666667888765543
No 403
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.25 E-value=1.9 Score=47.13 Aligned_cols=71 Identities=24% Similarity=0.224 Sum_probs=46.4
Q ss_pred hcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcc-cHHHHHH--cCceecCCCcCC-HhhhhccCCeEE
Q 007951 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARA--AGFTEENGTLGD-IYETISGSDLVL 183 (583)
Q Consensus 108 l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~-s~~~A~~--~G~~~~d~t~~d-~~Eav~~ADIVI 183 (583)
+++ ++|.|+|.|..|.+.|+-|.+. |++|.+.+..... ..+..++ .|+... ... ..+...+.|+||
T Consensus 3 ~~~-~~~~v~G~g~~G~~~a~~l~~~------g~~v~~~d~~~~~~~~~~l~~~~~gi~~~---~g~~~~~~~~~~d~vv 72 (445)
T PRK04308 3 FQN-KKILVAGLGGTGISMIAYLRKN------GAEVAAYDAELKPERVAQIGKMFDGLVFY---TGRLKDALDNGFDILA 72 (445)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCCCchhHHHHhhccCCcEEE---eCCCCHHHHhCCCEEE
Confidence 457 8999999999999999999988 9987766544322 1222222 366431 111 233456899999
Q ss_pred Ee--ccc
Q 007951 184 LL--ISD 188 (583)
Q Consensus 184 La--vpd 188 (583)
.. +||
T Consensus 73 ~spgi~~ 79 (445)
T PRK04308 73 LSPGISE 79 (445)
T ss_pred ECCCCCC
Confidence 84 454
No 404
>PRK10537 voltage-gated potassium channel; Provisional
Probab=87.11 E-value=3.2 Score=45.60 Aligned_cols=89 Identities=11% Similarity=0.034 Sum_probs=54.0
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCc--eecCCCcCCHh----hhhccCCeEEEe
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF--TEENGTLGDIY----ETISGSDLVLLL 185 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~--~~~d~t~~d~~----Eav~~ADIVILa 185 (583)
..|-|+|+|.+|..+++.|++. |.++++.+.+ + .+.....|. ...| ..+.+ .-+++|+.|+++
T Consensus 241 ~HvII~G~g~lg~~v~~~L~~~------g~~vvVId~d--~-~~~~~~~g~~vI~GD--~td~e~L~~AgI~~A~aVI~~ 309 (393)
T PRK10537 241 DHFIICGHSPLAINTYLGLRQR------GQAVTVIVPL--G-LEHRLPDDADLIPGD--SSDSAVLKKAGAARARAILAL 309 (393)
T ss_pred CeEEEECCChHHHHHHHHHHHC------CCCEEEEECc--h-hhhhccCCCcEEEeC--CCCHHHHHhcCcccCCEEEEc
Confidence 4688999999999999999988 8877665543 1 233333443 3212 22322 236789999999
Q ss_pred ccchHHHHHHHHHHhcCCCC-cEEEEe
Q 007951 186 ISDAAQADNYEKIFSCMKPN-SILGLS 211 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~G-aiL~~a 211 (583)
++++......-.....+.|+ +++.-+
T Consensus 310 t~dD~~Nl~ivL~ar~l~p~~kIIa~v 336 (393)
T PRK10537 310 RDNDADNAFVVLAAKEMSSDVKTVAAV 336 (393)
T ss_pred CCChHHHHHHHHHHHHhCCCCcEEEEE
Confidence 98876644332223334443 455543
No 405
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=87.03 E-value=2.1 Score=49.52 Aligned_cols=34 Identities=29% Similarity=0.400 Sum_probs=30.3
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecC
Q 007951 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~ 149 (583)
.| ++|+|||.|..|.+.|..|+.. |++|++..+.
T Consensus 326 ~~-~~VaIIGaGpAGLsaA~~L~~~------G~~V~V~E~~ 359 (654)
T PRK12769 326 SD-KRVAIIGAGPAGLACADVLARN------GVAVTVYDRH 359 (654)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHC------CCeEEEEecC
Confidence 57 8999999999999999999998 9988887654
No 406
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=86.94 E-value=2.5 Score=48.93 Aligned_cols=99 Identities=16% Similarity=0.082 Sum_probs=59.1
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eE--EEEecCCc------ccHHHHHHc--Cce--ecC-CCcCCHhh
Q 007951 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VV--KVGLRKGS------RSFAEARAA--GFT--EEN-GTLGDIYE 174 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~V--iVg~r~~s------~s~~~A~~~--G~~--~~d-~t~~d~~E 174 (583)
+. .||+|||.|.+|.++..+|..+ |+ ++ ++.+...+ +..+.|++. ++. .-+ ....+..+
T Consensus 128 R~-akVlVlG~Gg~~s~lv~sL~~s------G~~~I~~vd~D~v~SNlnRIgEl~e~A~~~n~~v~v~~i~~~~~~dl~e 200 (637)
T TIGR03693 128 RN-AKILAAGSGDFLTKLVRSLIDS------GFPRFHAIVTDAEEHALDRIHELAEIAEETDDALLVQEIDFAEDQHLHE 200 (637)
T ss_pred hc-ccEEEEecCchHHHHHHHHHhc------CCCcEEEEeccccchhhhHHHHHHHHHHHhCCCCceEeccCCcchhHHH
Confidence 66 8999999999999999999998 76 32 22232211 234555552 211 001 11345778
Q ss_pred hhccCCeEEEeccchHHHHHHHHHHhcCCCCc--EEEEecCc
Q 007951 175 TISGSDLVLLLISDAAQADNYEKIFSCMKPNS--ILGLSHGF 214 (583)
Q Consensus 175 av~~ADIVILavpd~a~~~Vl~eI~~~Lk~Ga--iL~~a~G~ 214 (583)
.++..|+|++.+-+..+.+.-.-....++.|+ +.....|.
T Consensus 201 v~~~~DiVi~vsDdy~~~~Lr~lN~acvkegk~~IPai~~G~ 242 (637)
T TIGR03693 201 AFEPADWVLYVSDNGDIDDLHALHAFCKEEGKGFIPAICLKQ 242 (637)
T ss_pred hhcCCcEEEEECCCCChHHHHHHHHHHHHcCCCeEEEEEccc
Confidence 99999999999886655542221222334443 34455554
No 407
>PRK07411 hypothetical protein; Validated
Probab=86.80 E-value=2.1 Score=46.78 Aligned_cols=88 Identities=10% Similarity=0.017 Sum_probs=54.2
Q ss_pred hhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCC-------------------cccHHHHHH---c-
Q 007951 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG-------------------SRSFAEARA---A- 160 (583)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~-------------------s~s~~~A~~---~- 160 (583)
.+.|+. .+|.|||+|-.|..++++|..+ |+ ++++.+... .+....++. .
T Consensus 33 q~~L~~-~~VlivG~GGlG~~va~~La~~------Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~n 105 (390)
T PRK07411 33 QKRLKA-ASVLCIGTGGLGSPLLLYLAAA------GIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEIN 105 (390)
T ss_pred HHHHhc-CcEEEECCCHHHHHHHHHHHHc------CCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHC
Confidence 578888 9999999999999999999988 66 333333210 011111111 1
Q ss_pred -Ccee--cCCCc--CCHhhhhccCCeEEEeccchHHHHHHHHHH
Q 007951 161 -GFTE--ENGTL--GDIYETISGSDLVLLLISDAAQADNYEKIF 199 (583)
Q Consensus 161 -G~~~--~d~t~--~d~~Eav~~ADIVILavpd~a~~~Vl~eI~ 199 (583)
.+.. ....+ .+..+.++++|+||.|+-+-....++.++.
T Consensus 106 p~v~v~~~~~~~~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~ 149 (390)
T PRK07411 106 PYCQVDLYETRLSSENALDILAPYDVVVDGTDNFPTRYLVNDAC 149 (390)
T ss_pred CCCeEEEEecccCHHhHHHHHhCCCEEEECCCCHHHHHHHHHHH
Confidence 1110 00111 123467899999999988777777777654
No 408
>PRK06392 homoserine dehydrogenase; Provisional
Probab=86.61 E-value=2 Score=45.94 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=19.8
Q ss_pred CEEEEEccchhHHHHHHHHHHh
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDS 133 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds 133 (583)
++|+|||+|++|..+++.|.+.
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~ 22 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSR 22 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhC
Confidence 4899999999999999998873
No 409
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=86.53 E-value=3.7 Score=44.28 Aligned_cols=71 Identities=13% Similarity=0.048 Sum_probs=47.8
Q ss_pred hhcCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCC----cccHHH----HHHcCceecCCCcCCHhhhhc
Q 007951 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAE----ARAAGFTEENGTLGDIYETIS 177 (583)
Q Consensus 107 ~l~gikkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~----s~s~~~----A~~~G~~~~d~t~~d~~Eav~ 177 (583)
.++| .||++||- .++..+++..+..- |.+|.+..... +.-.+. +...|.... ...++.|+++
T Consensus 151 ~l~g-lkv~~vGD~~~v~~Sl~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~--~~~d~~eav~ 221 (338)
T PRK02255 151 KLED-CKVVFVGDATQVCVSLMFIATKM------GMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVL--VTDDVDEAVK 221 (338)
T ss_pred CCCC-CEEEEECCCchHHHHHHHHHHhC------CCEEEEECCCccccCHHHHHHHHHHHHhcCCeEE--EEcCHHHHhC
Confidence 4788 99999997 47888888887765 88877765432 122223 233453210 1468899999
Q ss_pred cCCeEEEec
Q 007951 178 GSDLVLLLI 186 (583)
Q Consensus 178 ~ADIVILav 186 (583)
++|+|..-+
T Consensus 222 ~aDvvy~~~ 230 (338)
T PRK02255 222 DADFVYTDV 230 (338)
T ss_pred CCCEEEEcc
Confidence 999999843
No 410
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=86.47 E-value=2.1 Score=46.03 Aligned_cols=70 Identities=17% Similarity=0.197 Sum_probs=48.1
Q ss_pred hhcCCCEEEEEccc--hhHHHHHHHHHHhhhhhcCCceEEEEecCC----cccHH----HHHHcCceecCCCcCCHhhhh
Q 007951 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFA----EARAAGFTEENGTLGDIYETI 176 (583)
Q Consensus 107 ~l~gikkIgIIG~G--~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~----s~s~~----~A~~~G~~~~d~t~~d~~Eav 176 (583)
.++| .||++||-+ ++..+++..+..- |.++.+...+. +...+ .++..|.... ...++++++
T Consensus 152 ~l~g-~~va~vGd~~~~v~~Sl~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~--~~~d~~ea~ 222 (331)
T PRK02102 152 PLKG-LKLAYVGDGRNNMANSLMVGGAKL------GMDVRICAPKELWPEEELVALAREIAKETGAKIT--ITEDPEEAV 222 (331)
T ss_pred CCCC-CEEEEECCCcccHHHHHHHHHHHc------CCEEEEECCcccccCHHHHHHHHHHHHHcCCeEE--EEcCHHHHh
Confidence 4678 999999997 7888888888766 88876665432 11112 2334564310 146889999
Q ss_pred ccCCeEEEe
Q 007951 177 SGSDLVLLL 185 (583)
Q Consensus 177 ~~ADIVILa 185 (583)
++||+|..-
T Consensus 223 ~~aDvvyt~ 231 (331)
T PRK02102 223 KGADVIYTD 231 (331)
T ss_pred CCCCEEEEc
Confidence 999999984
No 411
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=86.35 E-value=2.3 Score=45.58 Aligned_cols=95 Identities=18% Similarity=0.141 Sum_probs=53.1
Q ss_pred EEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecC-CcccHHHHHHcCcee---------cC------CC---cC---
Q 007951 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK-GSRSFAEARAAGFTE---------EN------GT---LG--- 170 (583)
Q Consensus 113 kIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~-~s~s~~~A~~~G~~~---------~d------~t---~~--- 170 (583)
+|||+|+|.+|+.+.+.|.++ ..+.+++|+..++. +.+......+++-+. ++ +. +.
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~--~~~~~~~vvaInd~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~i~v~~~~ 78 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYES--GERLGIEVVALNELADQASMAHLLRYDTSHGRFPGEVKVDGDCLHVNGDCIRVLHSP 78 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhc--CCCCCeEEEEEecCCCHHHHHHHHhhCccCCCCCCcEEEeCCEEEECCeEEEEEEcC
Confidence 589999999999999998865 00013565443332 223333333333110 00 00 11
Q ss_pred CHhhh---hccCCeEEEeccchHHHHHHHHHHhcCCCCcEEEEec
Q 007951 171 DIYET---ISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (583)
Q Consensus 171 d~~Ea---v~~ADIVILavpd~a~~~Vl~eI~~~Lk~GaiL~~a~ 212 (583)
++++. -.+.|+|+.|++.....+.... +++.|+.+++.+
T Consensus 79 ~p~~~~w~~~gvDiVie~tG~~~s~e~a~~---~l~aGa~~V~~S 120 (325)
T TIGR01532 79 TPEALPWRALGVDLVLDCTGVYGNREQGER---HIRAGAKRVLFS 120 (325)
T ss_pred ChhhccccccCCCEEEEccchhccHHHHHH---HHHcCCeEEEec
Confidence 22221 1478999999998877665553 456787655443
No 412
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=86.30 E-value=1.9 Score=51.19 Aligned_cols=65 Identities=22% Similarity=0.175 Sum_probs=45.9
Q ss_pred CEEEEEccchhHHHH-HHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 112 NQIGVIGWGSQGPAQ-AQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 112 kkIgIIG~G~mG~A~-A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
++|.|||+|-.|.+- |+-|++. |++|.+.+.......+..++.|+... .....+.+.++|+||+.
T Consensus 5 ~~i~viG~G~sG~salA~~L~~~------G~~V~~sD~~~~~~~~~L~~~gi~~~---~g~~~~~~~~~d~vV~S 70 (809)
T PRK14573 5 LFYHFIGIGGIGMSALAHILLDR------GYSVSGSDLSEGKTVEKLKAKGARFF---LGHQEEHVPEDAVVVYS 70 (809)
T ss_pred ceEEEEEecHHhHHHHHHHHHHC------CCeEEEECCCCChHHHHHHHCCCEEe---CCCCHHHcCCCCEEEEC
Confidence 679999999999997 9999998 99987666543333334455687642 12233567789999873
No 413
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=86.11 E-value=1.7 Score=47.29 Aligned_cols=64 Identities=27% Similarity=0.305 Sum_probs=43.0
Q ss_pred EEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHH----HHH-HcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA----EAR-AAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 113 kIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~----~A~-~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
+|.|||+|-.|.++|+-|++. |++|.+.+........ ..+ ..|+... .....+.++++|+||..
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~------G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~---~g~~~~~~~~~d~vv~s 69 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKK------GAEVTVTDLKPNEELEPSMGQLRLNEGSVLH---TGLHLEDLNNADLVVKS 69 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHC------CCEEEEEeCCCCccchhHHHHHhhccCcEEE---ecCchHHhccCCEEEEC
Confidence 588999999999999999998 9998776654322111 112 2476531 11224567889988873
No 414
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=86.04 E-value=1.7 Score=46.40 Aligned_cols=21 Identities=29% Similarity=0.289 Sum_probs=19.8
Q ss_pred EEEEEccchhHHHHHHHHHHh
Q 007951 113 QIGVIGWGSQGPAQAQNLRDS 133 (583)
Q Consensus 113 kIgIIG~G~mG~A~A~nLrds 133 (583)
||.|||+|-.|..+|++|..+
T Consensus 1 kVLIvGaGGLGs~vA~~La~a 21 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGW 21 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHc
Confidence 589999999999999999988
No 415
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=85.95 E-value=2.6 Score=45.41 Aligned_cols=70 Identities=20% Similarity=0.195 Sum_probs=48.7
Q ss_pred hhcCCCEEEEEccc--hhHHHHHHHHHHhhhhhcCCceEEEEecCC----cccH----HHHHHcCceecCCCcCCHhhhh
Q 007951 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSF----AEARAAGFTEENGTLGDIYETI 176 (583)
Q Consensus 107 ~l~gikkIgIIG~G--~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~----s~s~----~~A~~~G~~~~d~t~~d~~Eav 176 (583)
.++| .||++||-+ ++..|++..+..- |.++.+...+. ..-. +.+.+.|.... ...++++++
T Consensus 153 ~l~g-~~ia~vGD~~~~v~~Sl~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~--~~~d~~ea~ 223 (336)
T PRK03515 153 AFNE-MTLAYAGDARNNMGNSLLEAAALT------GLDLRLVAPKACWPEAALVTECRALAQKNGGNIT--LTEDIAEGV 223 (336)
T ss_pred CcCC-CEEEEeCCCcCcHHHHHHHHHHHc------CCEEEEECCchhcCcHHHHHHHHHHHHHcCCeEE--EEcCHHHHh
Confidence 4778 899999986 6889988888776 88877765432 1112 23444563210 156889999
Q ss_pred ccCCeEEEe
Q 007951 177 SGSDLVLLL 185 (583)
Q Consensus 177 ~~ADIVILa 185 (583)
++||+|..-
T Consensus 224 ~~aDvvytd 232 (336)
T PRK03515 224 KGADFIYTD 232 (336)
T ss_pred CCCCEEEec
Confidence 999999975
No 416
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=85.69 E-value=2.6 Score=42.06 Aligned_cols=39 Identities=23% Similarity=0.337 Sum_probs=32.1
Q ss_pred hhhcCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCc
Q 007951 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (583)
Q Consensus 106 ~~l~gikkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s 151 (583)
+..++ |+|.|+|. |.+|..+++.|.+. |++|++..|..+
T Consensus 13 ~~~~~-~~ilItGasG~iG~~l~~~L~~~------g~~V~~~~R~~~ 52 (251)
T PLN00141 13 ENVKT-KTVFVAGATGRTGKRIVEQLLAK------GFAVKAGVRDVD 52 (251)
T ss_pred ccccC-CeEEEECCCcHHHHHHHHHHHhC------CCEEEEEecCHH
Confidence 45567 99999995 99999999999998 998877666543
No 417
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=85.66 E-value=1.7 Score=46.54 Aligned_cols=87 Identities=15% Similarity=0.205 Sum_probs=54.2
Q ss_pred EEEEEc-cchhHHHHHHHHHHhhhhhcCCce---EEEEecC--CcccHHHHHHcCceecCCCcCCH-hhhhccCCeEEEe
Q 007951 113 QIGVIG-WGSQGPAQAQNLRDSLAEAKSDIV---VKVGLRK--GSRSFAEARAAGFTEENGTLGDI-YETISGSDLVLLL 185 (583)
Q Consensus 113 kIgIIG-~G~mG~A~A~nLrdsl~~~g~G~~---ViVg~r~--~s~s~~~A~~~G~~~~d~t~~d~-~Eav~~ADIVILa 185 (583)
||+||| .|..|..+.+-|.+. ++. +.+..+. ..+... ..|... .+.+. .+.++++|+||+|
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~------~hp~~~l~~~as~~~~g~~~~---~~~~~~---~~~~~~~~~~~~~D~v~~a 68 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEER------NFPIDKLVLLASDRSAGRKVT---FKGKEL---EVNEAKIESFEGIDIALFS 68 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhC------CCChhhEEEEeccccCCCeee---eCCeeE---EEEeCChHHhcCCCEEEEC
Confidence 589999 899999999988776 553 2222222 112221 112111 01111 2345889999999
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEecCc
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
+|.....++.+++. +.|..|+|.++.
T Consensus 69 ~g~~~s~~~a~~~~---~~G~~VID~ss~ 94 (339)
T TIGR01296 69 AGGSVSKEFAPKAA---KCGAIVIDNTSA 94 (339)
T ss_pred CCHHHHHHHHHHHH---HCCCEEEECCHH
Confidence 99988877776653 467778877764
No 418
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=85.54 E-value=2.2 Score=45.25 Aligned_cols=78 Identities=17% Similarity=0.131 Sum_probs=53.2
Q ss_pred hhcCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 107 ~l~gikkIgIIG~G-~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
.++| |++.|||-+ ..|..++.-|.+.. ...+..|.+... + +.++.+.+++||+||.+
T Consensus 154 ~l~G-k~vvViGrS~iVGkPla~lL~~~~--~~~~aTVtvchs---~----------------T~~l~~~~~~ADIvIsA 211 (297)
T PRK14167 154 DTEG-ADVVVVGRSDIVGKPMANLLIQKA--DGGNATVTVCHS---R----------------TDDLAAKTRRADIVVAA 211 (297)
T ss_pred CCCC-CEEEEECCCcccHHHHHHHHhcCc--cCCCCEEEEeCC---C----------------CCCHHHHHhhCCEEEEc
Confidence 4889 999999976 78999999887530 000235555322 1 23567788999999998
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
+--.. ++. .+++|+|++|+|+
T Consensus 212 vGkp~---~i~--~~~ik~gaiVIDv 232 (297)
T PRK14167 212 AGVPE---LID--GSMLSEGATVIDV 232 (297)
T ss_pred cCCcC---ccC--HHHcCCCCEEEEc
Confidence 86433 222 3567999998886
No 419
>PLN02342 ornithine carbamoyltransferase
Probab=85.54 E-value=2.8 Score=45.46 Aligned_cols=69 Identities=22% Similarity=0.247 Sum_probs=48.6
Q ss_pred hhcCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCC----cccHHHHHHcC---ceecCCCcCCHhhhhcc
Q 007951 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEARAAG---FTEENGTLGDIYETISG 178 (583)
Q Consensus 107 ~l~gikkIgIIG~G-~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~----s~s~~~A~~~G---~~~~d~t~~d~~Eav~~ 178 (583)
.++| .||++||-+ ++..+++..+..- |.++.+..... ....+.+++.| +.. ..++++++++
T Consensus 191 ~l~g-lkva~vGD~~nva~Sli~~~~~~------G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~----~~d~~eav~~ 259 (348)
T PLN02342 191 RLEG-TKVVYVGDGNNIVHSWLLLAAVL------PFHFVCACPKGYEPDAKTVEKARAAGISKIEI----TNDPAEAVKG 259 (348)
T ss_pred CcCC-CEEEEECCCchhHHHHHHHHHHc------CCEEEEECCcccccCHHHHHHHHHhCCCcEEE----EcCHHHHhCC
Confidence 4778 899999975 6777877777766 88877665432 22334455555 232 5688999999
Q ss_pred CCeEEEec
Q 007951 179 SDLVLLLI 186 (583)
Q Consensus 179 ADIVILav 186 (583)
||+|....
T Consensus 260 aDVvy~~~ 267 (348)
T PLN02342 260 ADVVYTDV 267 (348)
T ss_pred CCEEEECC
Confidence 99999864
No 420
>PRK10637 cysG siroheme synthase; Provisional
Probab=85.46 E-value=4.3 Score=45.21 Aligned_cols=84 Identities=18% Similarity=0.077 Sum_probs=54.4
Q ss_pred hhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecC-CcccHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 007951 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK-GSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (583)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~-~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVIL 184 (583)
=.|+| ++|.|||.|.+|..=++.|.+. |.+|.|.-.. .++-.+.+.+..+...... .. .+-++++++||.
T Consensus 8 ~~l~~-~~vlvvGgG~vA~rk~~~ll~~------ga~v~visp~~~~~~~~l~~~~~i~~~~~~-~~-~~dl~~~~lv~~ 78 (457)
T PRK10637 8 CQLRD-RDCLLVGGGDVAERKARLLLDA------GARLTVNALAFIPQFTAWADAGMLTLVEGP-FD-ESLLDTCWLAIA 78 (457)
T ss_pred EEcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEcCCCCHHHHHHHhCCCEEEEeCC-CC-hHHhCCCEEEEE
Confidence 35788 9999999999999999999988 8777665433 2222233332222211111 12 345789999999
Q ss_pred eccchHHHHHHHHH
Q 007951 185 LISDAAQADNYEKI 198 (583)
Q Consensus 185 avpd~a~~~Vl~eI 198 (583)
||.|...-+-+.+.
T Consensus 79 at~d~~~n~~i~~~ 92 (457)
T PRK10637 79 ATDDDAVNQRVSEA 92 (457)
T ss_pred CCCCHHHhHHHHHH
Confidence 99998765544433
No 421
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.12 E-value=2.3 Score=46.52 Aligned_cols=66 Identities=15% Similarity=0.126 Sum_probs=43.2
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcc-cHHHHHH--cCceecCCCcCCHhhhhccCCeEEEe
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARA--AGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~-s~~~A~~--~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
-+|.|||+|..|.++|+-|++. |++|.+.+..... ..+..++ .|+....+ ....+.+.++|+||..
T Consensus 7 ~~~~v~G~G~sG~s~a~~L~~~------G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~--~~~~~~~~~~d~vV~s 75 (448)
T PRK03803 7 GLHIVVGLGKTGLSVVRFLARQ------GIPFAVMDSREQPPGLDTLAREFPDVELRCG--GFDCELLVQASEIIIS 75 (448)
T ss_pred CeEEEEeecHhHHHHHHHHHhC------CCeEEEEeCCCCchhHHHHHhhcCCcEEEeC--CCChHHhcCCCEEEEC
Confidence 4799999999999999999988 9988766654322 2222223 36653100 1124556789998873
No 422
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=84.91 E-value=3.8 Score=43.24 Aligned_cols=36 Identities=19% Similarity=0.220 Sum_probs=29.1
Q ss_pred hhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEe
Q 007951 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGL 147 (583)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~ 147 (583)
.+.|+. .+|.|||+|-.|..+|+||.-+ |+ .+.+.+
T Consensus 14 q~kL~~-s~VLIvG~gGLG~EiaKnLala------GVg~itI~D 50 (286)
T cd01491 14 MKKLQK-SNVLISGLGGLGVEIAKNLILA------GVKSVTLHD 50 (286)
T ss_pred HHHHhc-CcEEEEcCCHHHHHHHHHHHHc------CCCeEEEEc
Confidence 356667 8999999999999999999988 77 444444
No 423
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=84.77 E-value=9.8 Score=32.93 Aligned_cols=94 Identities=16% Similarity=0.170 Sum_probs=54.6
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHH----HcCceecCCCcCCH----hhhhccCC
Q 007951 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR----AAGFTEENGTLGDI----YETISGSD 180 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~----~~G~~~~d~t~~d~----~Eav~~AD 180 (583)
.+ ++|.-||+|.= .++..+.+... +.+ +++.+.++...+.++ ..+.....-...+. .......|
T Consensus 19 ~~-~~vldlG~G~G--~~~~~l~~~~~----~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 90 (124)
T TIGR02469 19 PG-DVLWDIGAGSG--SITIEAARLVP----NGR-VYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPD 90 (124)
T ss_pred CC-CEEEEeCCCCC--HHHHHHHHHCC----Cce-EEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCC
Confidence 35 78999999983 33444443310 224 466666555444443 23321000001121 12235789
Q ss_pred eEEEeccchHHHHHHHHHHhcCCCCcEEEE
Q 007951 181 LVLLLISDAAQADNYEKIFSCMKPNSILGL 210 (583)
Q Consensus 181 IVILavpd~a~~~Vl~eI~~~Lk~GaiL~~ 210 (583)
+|++.-++....++++++...|+||..+++
T Consensus 91 ~v~~~~~~~~~~~~l~~~~~~Lk~gG~li~ 120 (124)
T TIGR02469 91 RVFIGGSGGLLQEILEAIWRRLRPGGRIVL 120 (124)
T ss_pred EEEECCcchhHHHHHHHHHHHcCCCCEEEE
Confidence 999987777777899999999999887653
No 424
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=84.62 E-value=3.3 Score=39.19 Aligned_cols=76 Identities=20% Similarity=0.185 Sum_probs=48.1
Q ss_pred EEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCH---hhhhccCCeEEEeccch
Q 007951 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI---YETISGSDLVLLLISDA 189 (583)
Q Consensus 113 kIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~---~Eav~~ADIVILavpd~ 189 (583)
++.|+|.|..|..++..|++. |++++-..+.+..... ..-.|+.. +.+. .+..++.+.+++++++.
T Consensus 1 ~~~I~Gag~~g~~~~~~l~~~------g~~vvgfid~~~~~~~-~~i~g~pv----lg~~~~l~~~~~~~~~~iiai~~~ 69 (201)
T TIGR03570 1 KLVIIGAGGHGRVVADIAEDS------GWEIVGFLDDNPALQG-TSVDGLPV----LGGDEDLLRYPPDEVDLVVAIGDN 69 (201)
T ss_pred CEEEEcCCHHHHHHHHHHHhC------CCEEEEEEcCCccccC-cccCCccE----ECCHHHHhhhcccccEEEEEcCCH
Confidence 368999999999999999988 9987666655432111 12245543 2233 33344568899999754
Q ss_pred HH-HHHHHHHH
Q 007951 190 AQ-ADNYEKIF 199 (583)
Q Consensus 190 a~-~~Vl~eI~ 199 (583)
.. .++++.+.
T Consensus 70 ~~~~~i~~~l~ 80 (201)
T TIGR03570 70 KLRRRLFEKLK 80 (201)
T ss_pred HHHHHHHHHHH
Confidence 43 44555544
No 425
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=84.56 E-value=1.5 Score=47.88 Aligned_cols=66 Identities=18% Similarity=0.139 Sum_probs=42.7
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecC-CCcCCHhhhhccCCeEEE
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN-GTLGDIYETISGSDLVLL 184 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d-~t~~d~~Eav~~ADIVIL 184 (583)
++|||||-|-.|.=|++.-+.- |+++++.+.. +.+-........+..+ .....+.+++++||+|-.
T Consensus 2 ~tvgIlGGGQLgrMm~~aa~~l------G~~v~vLdp~-~~~PA~~va~~~i~~~~dD~~al~ela~~~DViT~ 68 (375)
T COG0026 2 KTVGILGGGQLGRMMALAAARL------GIKVIVLDPD-ADAPAAQVADRVIVAAYDDPEALRELAAKCDVITY 68 (375)
T ss_pred CeEEEEcCcHHHHHHHHHHHhc------CCEEEEecCC-CCCchhhcccceeecCCCCHHHHHHHHhhCCEEEE
Confidence 7899999999999999988877 9998776533 2222222223333210 001136678889999865
No 426
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=84.49 E-value=7.4 Score=42.17 Aligned_cols=96 Identities=17% Similarity=0.188 Sum_probs=61.8
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCc-CCHhhh----h--ccCCe
Q 007951 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL-GDIYET----I--SGSDL 181 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~-~d~~Ea----v--~~ADI 181 (583)
.| .++.|+|.|.+|...++-++.. |.++++..+.+....+.|++.|+..-+... .+..+. . ...|+
T Consensus 185 ~g-~~VlV~G~G~iG~~aiqlAk~~------Ga~~vi~~d~~~~r~~~a~~~Ga~~v~~~~~~~~~~~v~~~~~~~g~Dv 257 (393)
T TIGR02819 185 PG-STVYIAGAGPVGLAAAASAQLL------GAAVVIVGDLNPARLAQARSFGCETVDLSKDATLPEQIEQILGEPEVDC 257 (393)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCceEEEeCCCHHHHHHHHHcCCeEEecCCcccHHHHHHHHcCCCCCcE
Confidence 45 7999999999999999888877 887555545555678889999874211110 122222 2 24799
Q ss_pred EEEeccchHH-----------HHHHHHHHhcCCCCcEEEEe
Q 007951 182 VLLLISDAAQ-----------ADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 182 VILavpd~a~-----------~~Vl~eI~~~Lk~GaiL~~a 211 (583)
||-++-.... ...+++....+++|-.|+..
T Consensus 258 vid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~ 298 (393)
T TIGR02819 258 AVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIP 298 (393)
T ss_pred EEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEe
Confidence 9998875421 23556555667776655443
No 427
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=84.44 E-value=3.3 Score=45.63 Aligned_cols=71 Identities=17% Similarity=0.182 Sum_probs=48.1
Q ss_pred hhcCCCEEEEEcc-----c---hhHHHHHHHHHHhhhhhcCCceEEEEecCC----cccHHH----HHHcCceecCCCcC
Q 007951 107 AFNGINQIGVIGW-----G---SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAE----ARAAGFTEENGTLG 170 (583)
Q Consensus 107 ~l~gikkIgIIG~-----G---~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~----s~s~~~----A~~~G~~~~d~t~~ 170 (583)
-++| +||+|+|- | ++..|++..+..- |.++.+.-.++ +...+. +.+.|.... ...
T Consensus 184 ~l~g-~kVaivg~~~~~~g~~~~Va~Sl~~~~~~l------G~~v~~~~P~~~~~~~~i~~~a~~~~~~~G~~i~--~~~ 254 (395)
T PRK07200 184 NLKG-KKIAMTWAYSPSYGKPLSVPQGIIGLMTRF------GMDVTLAHPEGYDLMPEVVEVAKKNAKASGGSFR--QVN 254 (395)
T ss_pred ccCC-CEEEEEeccccccCCcchHHHHHHHHHHHc------CCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEE--EEc
Confidence 3677 89999985 4 6678888887766 88877765542 222233 444563210 146
Q ss_pred CHhhhhccCCeEEEec
Q 007951 171 DIYETISGSDLVLLLI 186 (583)
Q Consensus 171 d~~Eav~~ADIVILav 186 (583)
+++|++++||+|...+
T Consensus 255 d~~eav~~aDvVYtd~ 270 (395)
T PRK07200 255 SMEEAFKDADIVYPKS 270 (395)
T ss_pred CHHHHhCCCCEEEEcC
Confidence 8999999999999864
No 428
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=84.20 E-value=9.4 Score=40.55 Aligned_cols=99 Identities=22% Similarity=0.289 Sum_probs=54.2
Q ss_pred hhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc--eEEEEecCCcccHHHHHHc--C--ceec-CCCcCCHhhhhcc
Q 007951 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA--G--FTEE-NGTLGDIYETISG 178 (583)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~--~ViVg~r~~s~s~~~A~~~--G--~~~~-d~t~~d~~Eav~~ 178 (583)
+.++. .||.|+|.|+.|.|.|..+.-+ |+ ++.+.+-...+..-++... | |... .-+....-.+.++
T Consensus 16 ~~~~~-~KItVVG~G~VGmAca~siL~k------~Ladel~lvDv~~dklkGE~MDLqH~s~f~~~~~V~~~~Dy~~sa~ 88 (332)
T KOG1495|consen 16 KEFKH-NKITVVGVGQVGMACAISILLK------GLADELVLVDVNEDKLKGEMMDLQHGSAFLSTPNVVASKDYSVSAN 88 (332)
T ss_pred ccccC-ceEEEEccchHHHHHHHHHHHh------hhhhceEEEecCcchhhhhhhhhccccccccCCceEecCcccccCC
Confidence 34445 8999999999999999988876 65 4433333322222222221 1 2100 0001112245678
Q ss_pred CCeEEEeccchHH------------HHHHHHHHhcC---CCCcEEEEe
Q 007951 179 SDLVLLLISDAAQ------------ADNYEKIFSCM---KPNSILGLS 211 (583)
Q Consensus 179 ADIVILavpd~a~------------~~Vl~eI~~~L---k~GaiL~~a 211 (583)
+++||+..--.+. .++++.|.|.+ .|++++.++
T Consensus 89 S~lvIiTAGarq~~gesRL~lvQrNV~ifK~iip~lv~ySpd~~llvv 136 (332)
T KOG1495|consen 89 SKLVIITAGARQSEGESRLDLVQRNVDIFKAIIPALVKYSPDCILLVV 136 (332)
T ss_pred CcEEEEecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEe
Confidence 9999996542222 34555555544 567765544
No 429
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=84.19 E-value=6.9 Score=42.02 Aligned_cols=89 Identities=20% Similarity=0.233 Sum_probs=55.6
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceec-CCCcCC---HhhhhccCCeEEE
Q 007951 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGD---IYETISGSDLVLL 184 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~-d~t~~d---~~Eav~~ADIVIL 184 (583)
.| .+|.|.|.|.+|...++-++.. |.+|++..+.+++..+.+++.|...- + ..+ ..+.....|+|+-
T Consensus 178 ~g-~~VlV~G~G~vG~~avq~Ak~~------Ga~Vi~~~~~~~~~~~~a~~lGa~~~i~--~~~~~~v~~~~~~~D~vid 248 (375)
T PLN02178 178 SG-KRLGVNGLGGLGHIAVKIGKAF------GLRVTVISRSSEKEREAIDRLGADSFLV--TTDSQKMKEAVGTMDFIID 248 (375)
T ss_pred CC-CEEEEEcccHHHHHHHHHHHHc------CCeEEEEeCChHHhHHHHHhCCCcEEEc--CcCHHHHHHhhCCCcEEEE
Confidence 46 8999999999999999988887 88776655544444667777786320 0 011 1222335789888
Q ss_pred eccchHHHHHHHHHHhcCCCCcEEE
Q 007951 185 LISDAAQADNYEKIFSCMKPNSILG 209 (583)
Q Consensus 185 avpd~a~~~Vl~eI~~~Lk~GaiL~ 209 (583)
++.... .+.+....+++|-.++
T Consensus 249 ~~G~~~---~~~~~~~~l~~~G~iv 270 (375)
T PLN02178 249 TVSAEH---ALLPLFSLLKVSGKLV 270 (375)
T ss_pred CCCcHH---HHHHHHHhhcCCCEEE
Confidence 876432 2333344455555444
No 430
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=84.04 E-value=4.5 Score=42.98 Aligned_cols=65 Identities=17% Similarity=0.215 Sum_probs=45.7
Q ss_pred hhcCCCEEEEEcc---chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEE
Q 007951 107 AFNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (583)
Q Consensus 107 ~l~gikkIgIIG~---G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVI 183 (583)
.++| +||++||- +++..|++..+..- |.++.+...++-.... .. .+.. ..++.|++++||+|.
T Consensus 153 ~l~g-~kv~~vGD~~~~~v~~Sl~~~~~~~------g~~~~~~~P~~~~~~~--~~-~~~~----~~d~~ea~~~aDvvy 218 (305)
T PRK00856 153 RLEG-LKVAIVGDIKHSRVARSNIQALTRL------GAEVRLIAPPTLLPEG--MP-EYGV----HTDLDEVIEDADVVM 218 (305)
T ss_pred CCCC-CEEEEECCCCCCcHHHHHHHHHHHc------CCEEEEECCcccCccc--cc-ceEE----ECCHHHHhCCCCEEE
Confidence 4788 89999997 58999999998876 8887776543211000 00 1222 568899999999887
Q ss_pred Ee
Q 007951 184 LL 185 (583)
Q Consensus 184 La 185 (583)
.-
T Consensus 219 t~ 220 (305)
T PRK00856 219 ML 220 (305)
T ss_pred EC
Confidence 73
No 431
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=84.02 E-value=2.6 Score=46.23 Aligned_cols=64 Identities=20% Similarity=0.235 Sum_probs=43.9
Q ss_pred EEEEEccchhHHH-HHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 113 QIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 113 kIgIIG~G~mG~A-~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
+|-|||.|-.|.+ +|+-|++. |++|.+.+.......+..++.|+... .....+.+.++|+||+.
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~------G~~v~~~D~~~~~~~~~l~~~gi~~~---~g~~~~~~~~~d~vV~s 65 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNR------GYQVSGSDIAENATTKRLEALGIPIY---IGHSAENLDDADVVVVS 65 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHC------CCeEEEECCCcchHHHHHHHCcCEEe---CCCCHHHCCCCCEEEEC
Confidence 4789999999998 99999998 99987766443323333445677641 11223456789999873
No 432
>PRK01581 speE spermidine synthase; Validated
Probab=83.71 E-value=6.5 Score=43.13 Aligned_cols=93 Identities=16% Similarity=0.235 Sum_probs=57.3
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHc---------CceecCCC----cCCHhhhh--
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA---------GFTEENGT----LGDIYETI-- 176 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~---------G~~~~d~t----~~d~~Eav-- 176 (583)
++|.|||+| .|.+....|+.. +..-++..+.++...+.|++. ++. +.. ..|..+.+
T Consensus 152 krVLIIGgG-dG~tlrelLk~~------~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~--DpRV~vvi~Da~~fL~~ 222 (374)
T PRK01581 152 KRVLILGGG-DGLALREVLKYE------TVLHVDLVDLDGSMINMARNVPELVSLNKSAFF--DNRVNVHVCDAKEFLSS 222 (374)
T ss_pred CEEEEECCC-HHHHHHHHHhcC------CCCeEEEEeCCHHHHHHHHhccccchhccccCC--CCceEEEECcHHHHHHh
Confidence 899999998 455554444433 343345666667777777752 111 000 23444433
Q ss_pred --ccCCeEEEeccchHH--------HHHHHHHHhcCCCCcEEEEecC
Q 007951 177 --SGSDLVLLLISDAAQ--------ADNYEKIFSCMKPNSILGLSHG 213 (583)
Q Consensus 177 --~~ADIVILavpd~a~--------~~Vl~eI~~~Lk~GaiL~~a~G 213 (583)
..-|+||+=.||... .+.++.+...|+||-+++.-++
T Consensus 223 ~~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 223 PSSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSN 269 (374)
T ss_pred cCCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 245999998876422 4577788999999998765444
No 433
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=83.63 E-value=6.3 Score=40.75 Aligned_cols=90 Identities=20% Similarity=0.170 Sum_probs=54.9
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCce-EEEEecCCcccHHHHHHcCceec-CCCcCCH---hhhhc--cCCe
Q 007951 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGFTEE-NGTLGDI---YETIS--GSDL 181 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~-ViVg~r~~s~s~~~A~~~G~~~~-d~t~~d~---~Eav~--~ADI 181 (583)
.| .+|.|+|.|.+|...++-++.. |.+ |++. ..++...+.+++.|+... +....+. .+... ..|+
T Consensus 163 ~g-~~vlV~G~G~vG~~~~~~ak~~------G~~~vi~~-~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d~ 234 (339)
T cd08239 163 GR-DTVLVVGAGPVGLGALMLARAL------GAEDVIGV-DPSPERLELAKALGADFVINSGQDDVQEIRELTSGAGADV 234 (339)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEE-CCCHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCCE
Confidence 46 8999999999999999988887 887 6554 444455677888886320 1000111 12222 5789
Q ss_pred EEEeccchHHHHHHHHHHhcCCCCcEEE
Q 007951 182 VLLLISDAAQADNYEKIFSCMKPNSILG 209 (583)
Q Consensus 182 VILavpd~a~~~Vl~eI~~~Lk~GaiL~ 209 (583)
||-++..... +......++++..++
T Consensus 235 vid~~g~~~~---~~~~~~~l~~~G~~v 259 (339)
T cd08239 235 AIECSGNTAA---RRLALEAVRPWGRLV 259 (339)
T ss_pred EEECCCCHHH---HHHHHHHhhcCCEEE
Confidence 9888876543 223333455555444
No 434
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=83.60 E-value=13 Score=36.11 Aligned_cols=93 Identities=19% Similarity=0.245 Sum_probs=55.9
Q ss_pred hcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceec-CCCcCCHhhh-----hccCCe
Q 007951 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYET-----ISGSDL 181 (583)
Q Consensus 108 l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~-d~t~~d~~Ea-----v~~ADI 181 (583)
.+| .+|.|+|.|.+|.+.++-++.. |.+|++..+. +...+.+.+.|.... +....+..+. -...|+
T Consensus 133 ~~~-~~vli~g~~~~G~~~~~~a~~~------g~~v~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~ 204 (271)
T cd05188 133 KPG-DTVLVLGAGGVGLLAAQLAKAA------GARVIVTDRS-DEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADV 204 (271)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCeEEEEcCC-HHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCE
Confidence 456 8999999999999999888877 8777655544 344566666664310 1001112221 246899
Q ss_pred EEEeccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 182 VLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 182 VILavpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
|+.++... ..+..+...++++..++..
T Consensus 205 vi~~~~~~---~~~~~~~~~l~~~G~~v~~ 231 (271)
T cd05188 205 VIDAVGGP---ETLAQALRLLRPGGRIVVV 231 (271)
T ss_pred EEECCCCH---HHHHHHHHhcccCCEEEEE
Confidence 99988863 2334444555565554433
No 435
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=83.59 E-value=2 Score=46.09 Aligned_cols=64 Identities=20% Similarity=0.157 Sum_probs=41.1
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCC---HhhhhccCCeEEE
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVLL 184 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d---~~Eav~~ADIVIL 184 (583)
++|+|||.|-.|.-+++.+++. |+++++.+....... ....+.....+ ..| +.++++.+|+|..
T Consensus 3 ~~igilG~Gql~~ml~~aa~~l------G~~v~~~d~~~~~pa-~~~ad~~~~~~--~~D~~~l~~~a~~~dvit~ 69 (372)
T PRK06019 3 KTIGIIGGGQLGRMLALAAAPL------GYKVIVLDPDPDSPA-AQVADEVIVAD--YDDVAALRELAEQCDVITY 69 (372)
T ss_pred CEEEEECCCHHHHHHHHHHHHc------CCEEEEEeCCCCCch-hHhCceEEecC--CCCHHHHHHHHhcCCEEEe
Confidence 7899999999999999999987 999877655422211 11122222101 223 4557788888743
No 436
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=83.54 E-value=3.4 Score=45.10 Aligned_cols=69 Identities=13% Similarity=0.123 Sum_probs=43.3
Q ss_pred hcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 108 l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
+.+ ++|.|||+|-.|.+.+.-|++. |++|.+.+...........+.|+.... -....+.+++.|+||..
T Consensus 4 ~~~-~~i~v~G~G~sG~s~~~~l~~~------G~~v~~~D~~~~~~~~~~l~~g~~~~~--~~~~~~~~~~~d~vv~s 72 (438)
T PRK03806 4 YQG-KKVVIIGLGLTGLSCVDFFLAR------GVTPRVIDTRITPPGLDKLPENVERHT--GSLNDEWLLAADLIVAS 72 (438)
T ss_pred cCC-CEEEEEeeCHHHHHHHHHHHHC------CCeEEEEcCCCCchhHHHHhcCCEEEe--CCCCHHHhcCCCEEEEC
Confidence 346 8999999999999999888888 998766554322211112234764311 01223456778977763
No 437
>PRK07806 short chain dehydrogenase; Provisional
Probab=83.49 E-value=8.5 Score=37.67 Aligned_cols=36 Identities=25% Similarity=0.253 Sum_probs=30.0
Q ss_pred hcCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCC
Q 007951 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (583)
Q Consensus 108 l~gikkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~ 150 (583)
+++ ++|.|.|. |-+|.++++.|.+. |++|++..|..
T Consensus 4 ~~~-k~vlItGasggiG~~l~~~l~~~------G~~V~~~~r~~ 40 (248)
T PRK07806 4 LPG-KTALVTGSSRGIGADTAKILAGA------GAHVVVNYRQK 40 (248)
T ss_pred CCC-cEEEEECCCCcHHHHHHHHHHHC------CCEEEEEeCCc
Confidence 567 89999996 89999999999988 99887766653
No 438
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=83.48 E-value=1.5 Score=44.38 Aligned_cols=66 Identities=18% Similarity=0.089 Sum_probs=43.1
Q ss_pred EEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCC---Hhhhh------cc-CCe
Q 007951 113 QIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETI------SG-SDL 181 (583)
Q Consensus 113 kIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d---~~Eav------~~-ADI 181 (583)
+|.|+|. |.+|..+++.|.+. |++|.+..|+.++.. ..|+........| +.+++ +. +|.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~------g~~V~~~~R~~~~~~----~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~ 70 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAA------SVPFLVASRSSSSSA----GPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISA 70 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhC------CCcEEEEeCCCcccc----CCCCccccccCCCHHHHHHHHhcccCcCCceeE
Confidence 4789997 99999999999988 999888887644321 1222110001222 33455 45 899
Q ss_pred EEEeccc
Q 007951 182 VLLLISD 188 (583)
Q Consensus 182 VILavpd 188 (583)
|+++.|+
T Consensus 71 v~~~~~~ 77 (285)
T TIGR03649 71 VYLVAPP 77 (285)
T ss_pred EEEeCCC
Confidence 9988774
No 439
>PLN02527 aspartate carbamoyltransferase
Probab=83.42 E-value=3.5 Score=43.80 Aligned_cols=71 Identities=17% Similarity=0.128 Sum_probs=48.8
Q ss_pred hhcCCCEEEEEccc---hhHHHHHHHHHHhhhhhcCCceEEEEecCC----cccHHHHHHcCceecCCCcCCHhhhhccC
Q 007951 107 AFNGINQIGVIGWG---SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEARAAGFTEENGTLGDIYETISGS 179 (583)
Q Consensus 107 ~l~gikkIgIIG~G---~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~----s~s~~~A~~~G~~~~d~t~~d~~Eav~~A 179 (583)
.++| .||++||-+ ++..+++..+... .|.++.+...+. +...+.+++.|.... ...++++++++|
T Consensus 148 ~l~g-~kva~vGD~~~~rv~~Sl~~~~~~~-----~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~--~~~d~~~a~~~a 219 (306)
T PLN02527 148 RLDG-IKVGLVGDLANGRTVRSLAYLLAKY-----EDVKIYFVAPDVVKMKDDIKDYLTSKGVEWE--ESSDLMEVASKC 219 (306)
T ss_pred CcCC-CEEEEECCCCCChhHHHHHHHHHhc-----CCCEEEEECCCccCCCHHHHHHHHHcCCEEE--EEcCHHHHhCCC
Confidence 3788 899999976 5789988887653 167776665432 233455555564321 146889999999
Q ss_pred CeEEEe
Q 007951 180 DLVLLL 185 (583)
Q Consensus 180 DIVILa 185 (583)
|+|...
T Consensus 220 Dvvyt~ 225 (306)
T PLN02527 220 DVLYQT 225 (306)
T ss_pred CEEEEC
Confidence 999983
No 440
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=83.35 E-value=7.8 Score=42.19 Aligned_cols=69 Identities=17% Similarity=0.258 Sum_probs=53.4
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCH----------hhhhc-cCC
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI----------YETIS-GSD 180 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~----------~Eav~-~AD 180 (583)
.+++|+|+|-+|.|-.++++.. |-..+++.+.+....+.|++.|... +.+. .++.. .+|
T Consensus 187 ~tvaV~GlGgVGlaaI~gA~~a------gA~~IiAvD~~~~Kl~~A~~fGAT~----~vn~~~~~~vv~~i~~~T~gG~d 256 (366)
T COG1062 187 DTVAVFGLGGVGLAAIQGAKAA------GAGRIIAVDINPEKLELAKKFGATH----FVNPKEVDDVVEAIVELTDGGAD 256 (366)
T ss_pred CeEEEEeccHhHHHHHHHHHHc------CCceEEEEeCCHHHHHHHHhcCCce----eecchhhhhHHHHHHHhcCCCCC
Confidence 6899999999999999999987 7767788888888899999999864 2221 22233 688
Q ss_pred eEEEeccchH
Q 007951 181 LVLLLISDAA 190 (583)
Q Consensus 181 IVILavpd~a 190 (583)
.+|-++-...
T Consensus 257 ~~~e~~G~~~ 266 (366)
T COG1062 257 YAFECVGNVE 266 (366)
T ss_pred EEEEccCCHH
Confidence 8888876543
No 441
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=83.13 E-value=4.5 Score=47.02 Aligned_cols=36 Identities=22% Similarity=0.238 Sum_probs=30.6
Q ss_pred hhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecC
Q 007951 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (583)
Q Consensus 107 ~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~ 149 (583)
.-.+ ++|+|||.|..|.+.|..|+.. |++|++..+.
T Consensus 190 ~~~~-k~VaIIGaGpAGl~aA~~La~~------G~~Vtv~e~~ 225 (652)
T PRK12814 190 PKSG-KKVAIIGAGPAGLTAAYYLLRK------GHDVTIFDAN 225 (652)
T ss_pred CCCC-CEEEEECCCHHHHHHHHHHHHC------CCcEEEEecC
Confidence 3456 8999999999999999999998 8888777653
No 442
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=83.13 E-value=8.7 Score=38.28 Aligned_cols=91 Identities=19% Similarity=0.191 Sum_probs=56.0
Q ss_pred hcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCce-EEEEecCCcccHHHHHHcCceecCCCcCCHhhh--hccCCeEEE
Q 007951 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGFTEENGTLGDIYET--ISGSDLVLL 184 (583)
Q Consensus 108 l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~-ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Ea--v~~ADIVIL 184 (583)
-+| .+|.|.|.|.+|.+..+-++.. |.+ |++ .+.+++..+.+.+.|.. +......... -...|+|+-
T Consensus 96 ~~g-~~vlI~g~g~vg~~~i~~a~~~------g~~~vi~-~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~d~vl~ 165 (277)
T cd08255 96 RLG-ERVAVVGLGLVGLLAAQLAKAA------GAREVVG-VDPDAARRELAEALGPA--DPVAADTADEIGGRGADVVIE 165 (277)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCCcEEE-ECCCHHHHHHHHHcCCC--ccccccchhhhcCCCCCEEEE
Confidence 356 8999999999999998888877 877 544 44444456688887721 1111111111 135899998
Q ss_pred eccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 185 LISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 185 avpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
++.... .+.+....++++..++..
T Consensus 166 ~~~~~~---~~~~~~~~l~~~g~~~~~ 189 (277)
T cd08255 166 ASGSPS---ALETALRLLRDRGRVVLV 189 (277)
T ss_pred ccCChH---HHHHHHHHhcCCcEEEEE
Confidence 876432 344555566666555443
No 443
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=83.07 E-value=39 Score=35.31 Aligned_cols=20 Identities=30% Similarity=0.469 Sum_probs=17.8
Q ss_pred CEEEEEccchhHHHHHHHHH
Q 007951 112 NQIGVIGWGSQGPAQAQNLR 131 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLr 131 (583)
-|||||=+||+|.++...|.
T Consensus 3 vKiGiiKlGNig~s~~idl~ 22 (277)
T PRK00994 3 VKIGIIKLGNIGMSPVIDLL 22 (277)
T ss_pred EEEEEEEecccchHHHHHHH
Confidence 58999999999999987776
No 444
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=82.94 E-value=10 Score=37.55 Aligned_cols=83 Identities=17% Similarity=0.101 Sum_probs=50.3
Q ss_pred hcCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEE-e
Q 007951 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL-L 185 (583)
Q Consensus 108 l~gikkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVIL-a 185 (583)
++| |++.|+|. |-+|.++++.|.+. |.+|++..+..++..+.....+ ...+.+ .
T Consensus 5 l~~-k~~lItGas~gIG~~~a~~l~~~------G~~v~~~~~~~~~~~~~l~~~~-----------------~~~~~~Dl 60 (255)
T PRK06463 5 FKG-KVALITGGTRGIGRAIAEAFLRE------GAKVAVLYNSAENEAKELREKG-----------------VFTIKCDV 60 (255)
T ss_pred cCC-CEEEEeCCCChHHHHHHHHHHHC------CCEEEEEeCCcHHHHHHHHhCC-----------------CeEEEecC
Confidence 567 89999995 79999999999988 9887765554322221111111 111111 2
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEecCc
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
..+....++++++...+.+=.+|+..+|+
T Consensus 61 ~~~~~~~~~~~~~~~~~~~id~li~~ag~ 89 (255)
T PRK06463 61 GNRDQVKKSKEVVEKEFGRVDVLVNNAGI 89 (255)
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 34455566777776655433467777775
No 445
>PLN02477 glutamate dehydrogenase
Probab=82.81 E-value=2.3 Score=47.02 Aligned_cols=32 Identities=19% Similarity=0.330 Sum_probs=28.9
Q ss_pred hhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEE
Q 007951 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK 144 (583)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~Vi 144 (583)
..++| ++|+|.|+|+.|...|+-|.+. |.+|+
T Consensus 202 ~~l~g-~~VaIqGfGnVG~~~A~~L~e~------GakVV 233 (410)
T PLN02477 202 KSIAG-QTFVIQGFGNVGSWAAQLIHEK------GGKIV 233 (410)
T ss_pred CCccC-CEEEEECCCHHHHHHHHHHHHc------CCEEE
Confidence 46888 9999999999999999999988 88876
No 446
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=82.80 E-value=4.2 Score=45.06 Aligned_cols=36 Identities=31% Similarity=0.373 Sum_probs=30.7
Q ss_pred hhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecC
Q 007951 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (583)
Q Consensus 107 ~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~ 149 (583)
.-.+ ++|+|||.|..|.+.|..|++. |++|++..+.
T Consensus 140 ~~~~-~~VvIIGaGpAGl~aA~~l~~~------G~~V~vie~~ 175 (471)
T PRK12810 140 KRTG-KKVAVVGSGPAGLAAADQLARA------GHKVTVFERA 175 (471)
T ss_pred CCCC-CEEEEECcCHHHHHHHHHHHhC------CCcEEEEecC
Confidence 3467 8999999999999999999988 9888777654
No 447
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=82.71 E-value=3.5 Score=45.51 Aligned_cols=74 Identities=18% Similarity=0.153 Sum_probs=51.3
Q ss_pred hcCCCEEEEEccc----------hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHc--CceecCCCcCCHhhh
Q 007951 108 FNGINQIGVIGWG----------SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--GFTEENGTLGDIYET 175 (583)
Q Consensus 108 l~gikkIgIIG~G----------~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~--G~~~~d~t~~d~~Ea 175 (583)
++| |+|||.|+- +-...++..|.+. |.+|++++.. ..+.+... +... ..+..++
T Consensus 308 l~G-k~iavlgLafKpnTDD~ReSpa~~vi~~L~~~------Ga~V~aYDP~---a~~~~~~~~~~~~~----~~~~~~~ 373 (414)
T COG1004 308 LKG-KTIAVLGLAFKPNTDDMRESPALDIIKRLQEK------GAEVIAYDPV---AMENAFRNFPDVEL----ESDAEEA 373 (414)
T ss_pred CCC-cEEEEEEEeecCCCccchhchHHHHHHHHHHC------CCEEEEECch---hhHHHHhcCCCceE----eCCHHHH
Confidence 889 999999973 2344455556555 8888776553 23333322 1332 5789999
Q ss_pred hccCCeEEEeccchHHHHHH
Q 007951 176 ISGSDLVLLLISDAAQADNY 195 (583)
Q Consensus 176 v~~ADIVILavpd~a~~~Vl 195 (583)
+++||+|++++..+...++=
T Consensus 374 ~~~aDaivi~tew~ef~~~d 393 (414)
T COG1004 374 LKGADAIVINTEWDEFRDLD 393 (414)
T ss_pred HhhCCEEEEeccHHHHhccC
Confidence 99999999999988877644
No 448
>PRK09414 glutamate dehydrogenase; Provisional
Probab=82.61 E-value=3.9 Score=45.72 Aligned_cols=36 Identities=19% Similarity=0.229 Sum_probs=30.3
Q ss_pred hhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEec
Q 007951 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR 148 (583)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r 148 (583)
..++| ++|+|.|+|+.|...|+-|.+. |.+|+...+
T Consensus 228 ~~l~g-~rVaIqGfGnVG~~~A~~L~~~------GakVVavsD 263 (445)
T PRK09414 228 DSFEG-KRVVVSGSGNVAIYAIEKAQQL------GAKVVTCSD 263 (445)
T ss_pred CCcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEEc
Confidence 45789 9999999999999999999887 887665433
No 449
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=82.45 E-value=4.6 Score=41.30 Aligned_cols=72 Identities=21% Similarity=0.194 Sum_probs=44.8
Q ss_pred cCCCEEEEEc-cchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccH--HHHHH-cC------ceecCCC-cCCHhhhhc
Q 007951 109 NGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF--AEARA-AG------FTEENGT-LGDIYETIS 177 (583)
Q Consensus 109 ~gikkIgIIG-~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~--~~A~~-~G------~~~~d~t-~~d~~Eav~ 177 (583)
+| ++|.|.| .|-+|..++..|.+. |++|++..+...... ..... .+ +...|-. .....++++
T Consensus 3 ~~-~~ilVtGatGfIG~~l~~~L~~~------g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 75 (322)
T PLN02662 3 EG-KVVCVTGASGYIASWLVKLLLQR------GYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVD 75 (322)
T ss_pred CC-CEEEEECChHHHHHHHHHHHHHC------CCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHc
Confidence 35 8999999 699999999999998 998876666533211 11111 11 1111100 123456778
Q ss_pred cCCeEEEecc
Q 007951 178 GSDLVLLLIS 187 (583)
Q Consensus 178 ~ADIVILavp 187 (583)
++|+||.+..
T Consensus 76 ~~d~Vih~A~ 85 (322)
T PLN02662 76 GCEGVFHTAS 85 (322)
T ss_pred CCCEEEEeCC
Confidence 8999888764
No 450
>KOG3007 consensus Mu-crystallin [Amino acid transport and metabolism]
Probab=82.38 E-value=2.3 Score=44.85 Aligned_cols=97 Identities=13% Similarity=0.050 Sum_probs=65.5
Q ss_pred EEEEEccchhHHHHHHHHHHhhhhhcC-CceEEEEecCCcccHHHHHHcC-----ceecCCCcCCHhhhhccCCeEEEec
Q 007951 113 QIGVIGWGSQGPAQAQNLRDSLAEAKS-DIVVKVGLRKGSRSFAEARAAG-----FTEENGTLGDIYETISGSDLVLLLI 186 (583)
Q Consensus 113 kIgIIG~G~mG~A~A~nLrdsl~~~g~-G~~ViVg~r~~s~s~~~A~~~G-----~~~~d~t~~d~~Eav~~ADIVILav 186 (583)
-..|+|.|.|+..+...-.+. .. =.+|.++++..+.+.+.|.... +..+-....+.+++++.+|||+-++
T Consensus 140 vL~i~GsG~qA~~hi~ih~~~----~pslreVrIwnht~e~A~~la~~lsk~~~~iqie~~~~qsl~~aV~~sDIIs~at 215 (333)
T KOG3007|consen 140 VLTIFGSGLQAFWHIYIHIKL----IPSLREVRIWNHTNEMALDLAKSLSKLFSNIQIELNQYQSLNGAVSNSDIISGAT 215 (333)
T ss_pred EEEEEcccchhHHHHHHHHHh----cccceEEEeecCChHHHHHHHHHhhhcccceEEEEEehhhhhcccccCceEEecc
Confidence 468999999999987665543 11 1278899999887777777221 1110111456789999999999998
Q ss_pred cchHHHHHHHHHHhcCCCCcEEEEecCchhh
Q 007951 187 SDAAQADNYEKIFSCMKPNSILGLSHGFLLG 217 (583)
Q Consensus 187 pd~a~~~Vl~eI~~~Lk~GaiL~~a~G~~i~ 217 (583)
+...- ++ ....++||+.|-.+.+|+.+
T Consensus 216 lsteP--il--fgewlkpgthIdlVGsf~p~ 242 (333)
T KOG3007|consen 216 LSTEP--IL--FGEWLKPGTHIDLVGSFKPV 242 (333)
T ss_pred ccCCc--ee--eeeeecCCceEeeeccCCch
Confidence 85321 11 13467899989888888744
No 451
>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=82.31 E-value=20 Score=39.90 Aligned_cols=172 Identities=20% Similarity=0.139 Sum_probs=97.9
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccH--HHHHHc--Cceec----------------CCCcC
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSF--AEARAA--GFTEE----------------NGTLG 170 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~--~~A~~~--G~~~~----------------d~t~~ 170 (583)
.+|-|+|.|..+--+|..++.. +- +|-+..|.+.++. -.+.+. +.... |....
T Consensus 2 ~~VLI~GtGPvAiQLAv~lk~~------~~~~vGi~~R~S~rSq~f~~aL~~~~~~~~v~vqn~~h~~l~G~~~id~~~~ 75 (429)
T PF10100_consen 2 GNVLIVGTGPVAIQLAVILKKH------GNCRVGIVGRESVRSQRFFEALARSDGLFEVSVQNEQHQALSGECTIDHVFQ 75 (429)
T ss_pred CceEEEcCCHHHHHHHHHHHhc------cCceeeeecCcchhHHHHHHHHHhCCCEEEEeecchhhhhhcCeEEhhHhhc
Confidence 5789999999999999999975 32 4444456543333 222222 22110 11134
Q ss_pred CHhhhhccCCeEEEeccchHHHHHHHHHHh-cCCC-CcEEEEecCchhhhhhcccc-cCCCCccEEEe----------cc
Q 007951 171 DIYETISGSDLVLLLISDAAQADNYEKIFS-CMKP-NSILGLSHGFLLGHLQSMGL-DFPKNIGVIAV----------CP 237 (583)
Q Consensus 171 d~~Eav~~ADIVILavpd~a~~~Vl~eI~~-~Lk~-GaiL~~a~G~~i~~ie~~~i-~~p~dv~VI~v----------~P 237 (583)
+.+++..+=|.+|||||-++..+|+++|.+ .|+. ..+|.++..|..+.+-+..+ ....++.||.. .+
T Consensus 76 ~~~~i~g~WdtlILavtaDAY~~VL~ql~~~~L~~vk~iVLvSPtfGS~~lv~~~l~~~~~~~EVISFStY~gdTr~~d~ 155 (429)
T PF10100_consen 76 DYEEIEGEWDTLILAVTADAYLDVLQQLPWEVLKRVKSIVLVSPTFGSHLLVKGFLNDLGPDAEVISFSTYYGDTRWSDG 155 (429)
T ss_pred CHHHhcccccEEEEEechHHHHHHHHhcCHHHHhhCCEEEEECcccchHHHHHHHHHhcCCCceEEEeecccccceeccC
Confidence 566777788999999999999999997643 2333 23566666554332211001 12336777642 22
Q ss_pred CCCchhhHHhHhccccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCc-ccccchhhhhh
Q 007951 238 KGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPF-TFATTLEQEYR 299 (583)
Q Consensus 238 ngPg~~vR~lf~~G~e~~G~Gv~aliAv~qd~sgeale~a~ala~aIG~~~-vieTtf~eE~~ 299 (583)
..|-.+.-...+ -..++. ..+.....++....+++.+|-.- +..+-+..|.+
T Consensus 156 ~~~~~vlt~~vK---------~kiYig-St~~~s~~~~~l~~~~~~~gI~~~~~~~pl~AE~r 208 (429)
T PF10100_consen 156 EQPNRVLTTAVK---------KKIYIG-STHSNSPELDKLCRLLAQLGIQLEVMDNPLEAESR 208 (429)
T ss_pred CCcceehhhhhh---------ceEEEE-eCCCCChHHHHHHHHHHHcCCeEEEeCChHhhhhc
Confidence 333333221221 122233 34556678888899999999753 34444455544
No 452
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=82.28 E-value=4.5 Score=43.59 Aligned_cols=71 Identities=14% Similarity=0.202 Sum_probs=48.9
Q ss_pred hhcCCCEEEEEcc---chhHHHHHHHHHHhhhhhcCCceEEEEecCC----cccHHHHHHcCceecCCCcCCHhhhhccC
Q 007951 107 AFNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEARAAGFTEENGTLGDIYETISGS 179 (583)
Q Consensus 107 ~l~gikkIgIIG~---G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~----s~s~~~A~~~G~~~~d~t~~d~~Eav~~A 179 (583)
.++| .||++||= +++..+++..|... .|.++.+....+ ....+.+++.|.... .+.+++|++++|
T Consensus 156 ~l~g-~kia~vGD~~~~rv~~Sl~~~l~~~-----~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~--~~~d~~ea~~~a 227 (338)
T PRK08192 156 GIDG-MHIAMVGDLKFGRTVHSLSRLLCMY-----KNVSFTLVSPKELAMPDYVISDIENAGHKIT--ITDQLEGNLDKA 227 (338)
T ss_pred CcCC-CEEEEECcCCCCchHHHHHHHHHHh-----cCCEEEEECCccccCCHHHHHHHHHcCCeEE--EEcCHHHHHccC
Confidence 4788 99999998 58899988776533 167776665432 233455556564321 146889999999
Q ss_pred CeEEEe
Q 007951 180 DLVLLL 185 (583)
Q Consensus 180 DIVILa 185 (583)
|+|...
T Consensus 228 Dvvyt~ 233 (338)
T PRK08192 228 DILYLT 233 (338)
T ss_pred CEEEEc
Confidence 999984
No 453
>PRK05717 oxidoreductase; Validated
Probab=82.22 E-value=7.1 Score=38.65 Aligned_cols=36 Identities=22% Similarity=0.056 Sum_probs=30.1
Q ss_pred hhcCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecC
Q 007951 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (583)
Q Consensus 107 ~l~gikkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~ 149 (583)
.++| |+|.|+|. |.+|.++++.|.+. |.+|++..+.
T Consensus 7 ~~~~-k~vlItG~sg~IG~~~a~~l~~~------g~~v~~~~~~ 43 (255)
T PRK05717 7 GHNG-RVALVTGAARGIGLGIAAWLIAE------GWQVVLADLD 43 (255)
T ss_pred ccCC-CEEEEeCCcchHHHHHHHHHHHc------CCEEEEEcCC
Confidence 4678 99999995 89999999999988 8887766554
No 454
>PRK09242 tropinone reductase; Provisional
Probab=82.06 E-value=5.4 Score=39.47 Aligned_cols=88 Identities=15% Similarity=0.055 Sum_probs=52.2
Q ss_pred hcCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe-
Q 007951 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL- 185 (583)
Q Consensus 108 l~gikkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa- 185 (583)
++| |++.|+|. |-+|.++++.|.+. |++|++..|..+...+...+ + .+.....++.++.
T Consensus 7 ~~~-k~~lItGa~~gIG~~~a~~l~~~------G~~v~~~~r~~~~~~~~~~~--l----------~~~~~~~~~~~~~~ 67 (257)
T PRK09242 7 LDG-QTALITGASKGIGLAIAREFLGL------GADVLIVARDADALAQARDE--L----------AEEFPEREVHGLAA 67 (257)
T ss_pred cCC-CEEEEeCCCchHHHHHHHHHHHc------CCEEEEEeCCHHHHHHHHHH--H----------HhhCCCCeEEEEEC
Confidence 578 99999995 79999999999988 99887776653322111111 1 1111122333331
Q ss_pred --ccchHHHHHHHHHHhcCCCCcEEEEecCc
Q 007951 186 --ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 186 --vpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
..+..+...++++...+.+=.+|+..+|.
T Consensus 68 Dl~~~~~~~~~~~~~~~~~g~id~li~~ag~ 98 (257)
T PRK09242 68 DVSDDEDRRAILDWVEDHWDGLHILVNNAGG 98 (257)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 23444556667766655444467777775
No 455
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=81.99 E-value=3.4 Score=45.74 Aligned_cols=95 Identities=13% Similarity=0.032 Sum_probs=62.4
Q ss_pred hhhcCCCEEEEEcc----------chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhh
Q 007951 106 DAFNGINQIGVIGW----------GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET 175 (583)
Q Consensus 106 ~~l~gikkIgIIG~----------G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Ea 175 (583)
+.++| ++|+|.|+ .+-+..++..|++. |.+|.+.+..-.. ....+..|... . + ..+
T Consensus 310 ~~~~~-~~V~vlGlafK~~t~D~R~Spa~~ii~~L~~~------g~~V~~~DP~v~~-~~~~~~~~~~~----~-~-~~~ 375 (425)
T PRK15182 310 INVEG-SSVLILGFTFKENCPDIRNTRIIDVVKELGKY------SCKVDIFDPWVDA-EEVRREYGIIP----V-S-EVK 375 (425)
T ss_pred CCCCC-CEEEEEEeEeCCCCCccccCcHHHHHHHHHhC------CCEEEEECCCCCh-hHHHHhcCccc----c-h-hhh
Confidence 34678 99999998 57788888888887 9888876553111 11112334321 1 1 235
Q ss_pred hccCCeEEEeccchHHHHH-HHHHHhcCCCCcEEEEecCc
Q 007951 176 ISGSDLVLLLISDAAQADN-YEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 176 v~~ADIVILavpd~a~~~V-l~eI~~~Lk~GaiL~~a~G~ 214 (583)
+++||+|+++|.-....++ ++.+...++...+|+|.-++
T Consensus 376 ~~~ad~vvi~t~h~~f~~~~~~~~~~~~~~~~~iiD~r~~ 415 (425)
T PRK15182 376 SSHYDAIIVAVGHQQFKQMGSEDIRGFGKDKHVLYDLKYV 415 (425)
T ss_pred hcCCCEEEEccCCHHhhcCCHHHHHHhcCCCCEEEECCCC
Confidence 6789999999998777643 55666666644577786554
No 456
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=81.97 E-value=8.4 Score=40.15 Aligned_cols=47 Identities=21% Similarity=0.222 Sum_probs=35.5
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCc
Q 007951 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF 162 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~ 162 (583)
.| .+|.|.|.|.+|...++-++.. |.++++....++...+.+++.|.
T Consensus 160 ~g-~~vlV~G~g~vG~~~~~~a~~~------G~~~v~~~~~~~~~~~~~~~~Ga 206 (347)
T PRK10309 160 EG-KNVIIIGAGTIGLLAIQCAVAL------GAKSVTAIDINSEKLALAKSLGA 206 (347)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEECCCHHHHHHHHHcCC
Confidence 46 8999999999999999988887 88644444444445667777775
No 457
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=81.72 E-value=10 Score=40.16 Aligned_cols=93 Identities=16% Similarity=0.157 Sum_probs=55.2
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceec-CCC-cCCHhhhhccCCeEEEec
Q 007951 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGT-LGDIYETISGSDLVLLLI 186 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~-d~t-~~d~~Eav~~ADIVILav 186 (583)
.| .++.|+|.|.+|...++-++.. |.++++..+.+++....+++.|...- +.. .....+.....|+|+-++
T Consensus 180 ~g-~~vlV~G~G~vG~~av~~Ak~~------G~~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~D~vid~~ 252 (357)
T PLN02514 180 SG-LRGGILGLGGVGHMGVKIAKAM------GHHVTVISSSDKKREEALEHLGADDYLVSSDAAEMQEAADSLDYIIDTV 252 (357)
T ss_pred CC-CeEEEEcccHHHHHHHHHHHHC------CCeEEEEeCCHHHHHHHHHhcCCcEEecCCChHHHHHhcCCCcEEEECC
Confidence 56 8899999999999999888887 88776665554443344455776310 000 001122223578998888
Q ss_pred cchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 187 SDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 187 pd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
... ..++.....++++..++..
T Consensus 253 g~~---~~~~~~~~~l~~~G~iv~~ 274 (357)
T PLN02514 253 PVF---HPLEPYLSLLKLDGKLILM 274 (357)
T ss_pred Cch---HHHHHHHHHhccCCEEEEE
Confidence 742 2333444556666655433
No 458
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=81.64 E-value=12 Score=39.37 Aligned_cols=93 Identities=23% Similarity=0.294 Sum_probs=55.7
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceec-CCCcCCHhh----hh--ccCCe
Q 007951 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYE----TI--SGSDL 181 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~-d~t~~d~~E----av--~~ADI 181 (583)
.| .+|.|+|.|.+|...++-++.. |.+.++..+.+++..+.+++.|...- +....+..+ .. ...|+
T Consensus 176 ~g-~~VlV~G~g~vG~~a~~~ak~~------G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~ 248 (358)
T TIGR03451 176 RG-DSVAVIGCGGVGDAAIAGAALA------GASKIIAVDIDDRKLEWAREFGATHTVNSSGTDPVEAIRALTGGFGADV 248 (358)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEEcCCHHHHHHHHHcCCceEEcCCCcCHHHHHHHHhCCCCCCE
Confidence 46 8999999999999999988877 87533444444556788888886310 101112212 22 14788
Q ss_pred EEEeccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 182 VLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 182 VILavpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
|+-++... ..+.+....+++|-.++..
T Consensus 249 vid~~g~~---~~~~~~~~~~~~~G~iv~~ 275 (358)
T TIGR03451 249 VIDAVGRP---ETYKQAFYARDLAGTVVLV 275 (358)
T ss_pred EEECCCCH---HHHHHHHHHhccCCEEEEE
Confidence 88887642 2233333455665555433
No 459
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=81.58 E-value=4.9 Score=44.77 Aligned_cols=72 Identities=15% Similarity=0.166 Sum_probs=49.3
Q ss_pred hhcCCCEEEEEcc---chhHHHHHHHHHHhhhhhcCCceEEEEecCC----cccHHHHHHcCceecCCCcCCHhhhhccC
Q 007951 107 AFNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEARAAGFTEENGTLGDIYETISGS 179 (583)
Q Consensus 107 ~l~gikkIgIIG~---G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~----s~s~~~A~~~G~~~~d~t~~d~~Eav~~A 179 (583)
.++| +||++||- +++..|++..+... .|.++.+..... +...+.+.+.|.... .+.++.|++++|
T Consensus 238 ~l~G-~kIa~vGD~~~~rv~~Sl~~~la~~-----~G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~--~~~d~~eav~~A 309 (429)
T PRK11891 238 IVDG-AHIALVGDLKYGRTVHSLVKLLALY-----RGLKFTLVSPPTLEMPAYIVEQISRNGHVIE--QTDDLAAGLRGA 309 (429)
T ss_pred CcCC-CEEEEECcCCCChHHHHHHHHHHHh-----cCCEEEEECCCccccCHHHHHHHHhcCCeEE--EEcCHHHHhCCC
Confidence 3788 99999998 48899999887542 177776654432 223345555564321 146889999999
Q ss_pred CeEEEec
Q 007951 180 DLVLLLI 186 (583)
Q Consensus 180 DIVILav 186 (583)
|+|....
T Consensus 310 DVVYt~~ 316 (429)
T PRK11891 310 DVVYATR 316 (429)
T ss_pred CEEEEcC
Confidence 9999843
No 460
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=81.56 E-value=4.9 Score=43.70 Aligned_cols=70 Identities=13% Similarity=0.084 Sum_probs=46.5
Q ss_pred hcCCCEEEEEccc--------hhHHHHHHHHHHhhhhhcCCceEEEEecCC----cccHHH----HHHcCceecCCCcCC
Q 007951 108 FNGINQIGVIGWG--------SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAE----ARAAGFTEENGTLGD 171 (583)
Q Consensus 108 l~gikkIgIIG~G--------~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~----s~s~~~----A~~~G~~~~d~t~~d 171 (583)
++| +||+|+|.| ++..|++..+..- |.++.+..... +...+. +.+.|.... ...+
T Consensus 168 l~g-~kvai~~~~d~~~gr~~~v~~Sl~~~~~~~------G~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~--~~~d 238 (357)
T TIGR03316 168 LKG-KKFAMTWAYSPSYGKPLSVPQGIIGLMTRF------GMDVTLAHPEGYHLLPEVIEVAKKNAAENGGKFN--IVNS 238 (357)
T ss_pred cCC-CEEEEEeccccccCccchHHHHHHHHHHHc------CCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEE--EEcC
Confidence 678 899999853 4557777777765 88877765442 222233 334564310 1568
Q ss_pred HhhhhccCCeEEEec
Q 007951 172 IYETISGSDLVLLLI 186 (583)
Q Consensus 172 ~~Eav~~ADIVILav 186 (583)
.+|++++||+|..-.
T Consensus 239 ~~ea~~~aDvvyt~~ 253 (357)
T TIGR03316 239 MDEAFKDADIVYPKS 253 (357)
T ss_pred HHHHhCCCCEEEECC
Confidence 899999999999864
No 461
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=81.50 E-value=11 Score=39.97 Aligned_cols=90 Identities=18% Similarity=0.235 Sum_probs=53.4
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHHcCceec-CCCcCCHhhhhc-----cCCe
Q 007951 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS-----GSDL 181 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~~~A~~~G~~~~-d~t~~d~~Eav~-----~ADI 181 (583)
.| .+|.|+|.|.+|...++-++.. |. +|++ .+.++...+.+++.|...- +....+..+.+. ..|+
T Consensus 191 ~g-~~VlV~G~G~vG~~a~~lak~~------G~~~Vi~-~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~ 262 (371)
T cd08281 191 PG-QSVAVVGLGGVGLSALLGAVAA------GASQVVA-VDLNEDKLALARELGATATVNAGDPNAVEQVRELTGGGVDY 262 (371)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCcEEE-EcCCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCE
Confidence 46 7999999999999999888877 87 4544 4444556778888886320 100011112121 4788
Q ss_pred EEEeccchHHHHHHHHHHhcCCCCcEEE
Q 007951 182 VLLLISDAAQADNYEKIFSCMKPNSILG 209 (583)
Q Consensus 182 VILavpd~a~~~Vl~eI~~~Lk~GaiL~ 209 (583)
||-++.... .+......++++-.++
T Consensus 263 vid~~G~~~---~~~~~~~~l~~~G~iv 287 (371)
T cd08281 263 AFEMAGSVP---ALETAYEITRRGGTTV 287 (371)
T ss_pred EEECCCChH---HHHHHHHHHhcCCEEE
Confidence 888875321 2333333455554443
No 462
>PRK07825 short chain dehydrogenase; Provisional
Probab=81.48 E-value=7.7 Score=38.83 Aligned_cols=86 Identities=19% Similarity=0.170 Sum_probs=50.8
Q ss_pred hcCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEec
Q 007951 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (583)
Q Consensus 108 l~gikkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILav 186 (583)
++| ++|.|.|. |-+|.++++.|.+. |++|++..|+.++..+.+.+.+ . .+ .-.+|+ .
T Consensus 3 ~~~-~~ilVtGasggiG~~la~~l~~~------G~~v~~~~r~~~~~~~~~~~~~-~---------~~-~~~~D~----~ 60 (273)
T PRK07825 3 LRG-KVVAITGGARGIGLATARALAAL------GARVAIGDLDEALAKETAAELG-L---------VV-GGPLDV----T 60 (273)
T ss_pred CCC-CEEEEeCCCchHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHhc-c---------ce-EEEccC----C
Confidence 457 89999996 78999999999988 9988777664332212121111 0 00 012332 2
Q ss_pred cchHHHHHHHHHHhcCCCCcEEEEecCch
Q 007951 187 SDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (583)
Q Consensus 187 pd~a~~~Vl~eI~~~Lk~GaiL~~a~G~~ 215 (583)
.++...++++++...+.+=.+|+..+|+.
T Consensus 61 ~~~~~~~~~~~~~~~~~~id~li~~ag~~ 89 (273)
T PRK07825 61 DPASFAAFLDAVEADLGPIDVLVNNAGVM 89 (273)
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCcC
Confidence 34455566776665443334677777763
No 463
>PRK06057 short chain dehydrogenase; Provisional
Probab=81.46 E-value=12 Score=37.12 Aligned_cols=36 Identities=25% Similarity=0.240 Sum_probs=30.7
Q ss_pred hhcCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecC
Q 007951 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (583)
Q Consensus 107 ~l~gikkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~ 149 (583)
.++| ++|-|+|. |-+|.++++.|.+. |++|++..+.
T Consensus 4 ~~~~-~~vlItGasggIG~~~a~~l~~~------G~~v~~~~r~ 40 (255)
T PRK06057 4 RLAG-RVAVITGGGSGIGLATARRLAAE------GATVVVGDID 40 (255)
T ss_pred cCCC-CEEEEECCCchHHHHHHHHHHHc------CCEEEEEeCC
Confidence 3678 99999997 89999999999988 9888776654
No 464
>PRK13984 putative oxidoreductase; Provisional
Probab=81.41 E-value=5.2 Score=45.70 Aligned_cols=35 Identities=20% Similarity=0.194 Sum_probs=29.9
Q ss_pred hcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecC
Q 007951 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (583)
Q Consensus 108 l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~ 149 (583)
-++ ++|.|||.|..|.+.|..|++. |++|.+..+.
T Consensus 281 ~~~-~~v~IIGaG~aGl~aA~~L~~~------G~~v~vie~~ 315 (604)
T PRK13984 281 KKN-KKVAIVGSGPAGLSAAYFLATM------GYEVTVYESL 315 (604)
T ss_pred cCC-CeEEEECCCHHHHHHHHHHHHC------CCeEEEEecC
Confidence 356 8999999999999999999998 9888776543
No 465
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=81.29 E-value=4.6 Score=42.78 Aligned_cols=69 Identities=17% Similarity=0.174 Sum_probs=47.6
Q ss_pred hcCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCC----cccHHH----HHHcCceecCCCcCCHhhhhcc
Q 007951 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAE----ARAAGFTEENGTLGDIYETISG 178 (583)
Q Consensus 108 l~gikkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~----s~s~~~----A~~~G~~~~d~t~~d~~Eav~~ 178 (583)
++| .||++||- ++...|++..+..- |.++.+...+. ....+. +.+.|.... ...+.++++++
T Consensus 146 l~g-~~v~~vGd~~~v~~Sl~~~l~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~--~~~d~~~a~~~ 216 (304)
T TIGR00658 146 LKG-VKVVYVGDGNNVCNSLMLAGAKL------GMDVVVATPEGYEPDADIVKKAQEIAKENGGSVE--LTHDPVEAVKG 216 (304)
T ss_pred CCC-cEEEEEeCCCchHHHHHHHHHHc------CCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEE--EEcCHHHHhCC
Confidence 678 89999996 68888888888776 88877765432 111222 344553210 14688999999
Q ss_pred CCeEEEe
Q 007951 179 SDLVLLL 185 (583)
Q Consensus 179 ADIVILa 185 (583)
||+|...
T Consensus 217 aDvvy~~ 223 (304)
T TIGR00658 217 ADVIYTD 223 (304)
T ss_pred CCEEEEc
Confidence 9999985
No 466
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=81.05 E-value=6.1 Score=44.17 Aligned_cols=36 Identities=31% Similarity=0.411 Sum_probs=30.4
Q ss_pred hhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecC
Q 007951 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (583)
Q Consensus 107 ~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~ 149 (583)
.-.+ ++|.|||.|..|.+.|..|++. |++|++..+.
T Consensus 140 ~~~~-~~V~IIGaG~aGl~aA~~L~~~------g~~V~v~e~~ 175 (485)
T TIGR01317 140 KRTG-KKVAVVGSGPAGLAAADQLNRA------GHTVTVFERE 175 (485)
T ss_pred CCCC-CEEEEECCcHHHHHHHHHHHHc------CCeEEEEecC
Confidence 3456 8999999999999999999998 8888777543
No 467
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=80.90 E-value=2.2 Score=45.62 Aligned_cols=33 Identities=33% Similarity=0.321 Sum_probs=29.3
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCC
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~ 150 (583)
++|.|||.|.+|.+.|..|.+. |.+|+|..+..
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~------g~~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQR------GYQVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHC------CCeEEEEeCCC
Confidence 6899999999999999999998 89988877653
No 468
>PLN02214 cinnamoyl-CoA reductase
Probab=80.89 E-value=5.7 Score=41.85 Aligned_cols=76 Identities=18% Similarity=0.156 Sum_probs=47.6
Q ss_pred hhhcCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHH-H--Hc---Cc--eecCCC-cCCHhhh
Q 007951 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA-R--AA---GF--TEENGT-LGDIYET 175 (583)
Q Consensus 106 ~~l~gikkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A-~--~~---G~--~~~d~t-~~d~~Ea 175 (583)
..+++ |+|.|.|. |-+|..++..|.+. |++|++..|..+...... . .. .+ ...|-+ ..+..++
T Consensus 6 ~~~~~-~~vlVTGatGfIG~~l~~~L~~~------G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~ 78 (342)
T PLN02214 6 ASPAG-KTVCVTGAGGYIASWIVKILLER------GYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAA 78 (342)
T ss_pred ccCCC-CEEEEECCCcHHHHHHHHHHHHC------cCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHH
Confidence 34577 89999997 99999999999998 998876666433211110 1 11 11 111100 1124567
Q ss_pred hccCCeEEEeccc
Q 007951 176 ISGSDLVLLLISD 188 (583)
Q Consensus 176 v~~ADIVILavpd 188 (583)
++++|+||-+..+
T Consensus 79 ~~~~d~Vih~A~~ 91 (342)
T PLN02214 79 IDGCDGVFHTASP 91 (342)
T ss_pred HhcCCEEEEecCC
Confidence 7889999988643
No 469
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=80.80 E-value=3.1 Score=43.94 Aligned_cols=172 Identities=13% Similarity=0.157 Sum_probs=96.5
Q ss_pred CEEEEEc-cchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhc--cCCeEEEeccc
Q 007951 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (583)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~--~ADIVILavpd 188 (583)
.|+-|=| .|.||.-+...+++. |.+++.+...+.-.. . -.|..+ +.+.+|+++ ++|+-++.+|+
T Consensus 9 tkvivqGitg~~gtfh~~~~l~y------Gt~~V~GvtPgkgG~-~--~~g~PV----f~tV~EA~~~~~a~~svI~Vp~ 75 (293)
T COG0074 9 TKVIVQGITGKQGTFHTEQMLAY------GTKIVGGVTPGKGGQ-T--ILGLPV----FNTVEEAVKETGANASVIFVPP 75 (293)
T ss_pred CeEEEeccccccchHHHHHHHHh------CCceeecccCCCCce-E--EcCccH----HHHHHHHHHhhCCCEEEEecCc
Confidence 5666777 589999999999988 887666655432110 0 023332 345667664 58999999998
Q ss_pred hHHHHHHHH-HHhcCCCCcEEEEecCchhhhhhcccccCCCCccEEEeccCCCchhhHHhHhcc----ccccCCCceEEE
Q 007951 189 AAQADNYEK-IFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQG----KEINGAGINSSF 263 (583)
Q Consensus 189 ~a~~~Vl~e-I~~~Lk~GaiL~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G----~e~~G~Gv~ali 263 (583)
....+-+-| |...++ .+++++-|+.++..-..... -+...+..+=||+||-.....+.-| ..+. .|--.++
T Consensus 76 ~~aadai~EAida~i~--liv~ITEgIP~~D~~~~~~~-a~~~g~~iiGPncpGiI~Pg~~kiGimp~~i~~-~G~IGiV 151 (293)
T COG0074 76 PFAADAILEAIDAGIK--LVVIITEGIPVLDMLELKRY-AREKGTRLIGPNCPGIITPGECKIGIMPGNIYK-PGNIGIV 151 (293)
T ss_pred HHHHHHHHHHHhCCCc--EEEEEeCCCCHHHHHHHHHH-HHhcCCEEECCCCCccCcCCcceeeechhhhcc-CCceEEE
Confidence 877765544 433232 26779999975533210001 1223456667999998865433322 1111 3455555
Q ss_pred eecCCCCHHHHHHHHH------HHHHhCCCcccccchhhhhhh
Q 007951 264 AVHQDVDGRATNVALG------WSVALGSPFTFATTLEQEYRS 300 (583)
Q Consensus 264 Av~qd~sgeale~a~a------la~aIG~~~vieTtf~eE~~s 300 (583)
.-+...+-|....... .+.+||...+.-|+|.+..+.
T Consensus 152 SrSGTLTyE~~~qlt~~G~GqS~~IGiGGDpi~Gt~fid~L~~ 194 (293)
T COG0074 152 SRSGTLTYEAVSQLTEAGLGQSTAIGIGGDPIPGTSFIDALEM 194 (293)
T ss_pred ecCcchHHHHHHHHHhcCCceEEEEEeCCCCcCCccHHHHHHH
Confidence 5444444443333221 122345545777777765433
No 470
>PRK08374 homoserine dehydrogenase; Provisional
Probab=80.74 E-value=8.7 Score=41.20 Aligned_cols=95 Identities=17% Similarity=0.187 Sum_probs=50.5
Q ss_pred CEEEEEccchhHHHHHHHHHHh---hh-hhcCCceEE-EEecCCc---------ccH-HHHHHcCceec--C--C-CcCC
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDS---LA-EAKSDIVVK-VGLRKGS---------RSF-AEARAAGFTEE--N--G-TLGD 171 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds---l~-~~g~G~~Vi-Vg~r~~s---------~s~-~~A~~~G~~~~--d--~-t~~d 171 (583)
.+|+|+|+|++|..+++-|.+. +. ..|..++|+ |.+++.. ..+ +...+.|-... + + ...+
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~~~ 82 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYNFS 82 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccCCC
Confidence 5899999999999999988773 11 122224433 2232210 111 11111221100 0 0 0125
Q ss_pred Hhhhh--ccCCeEEEeccchHHHHHHHHHHhcCCCCcEEE
Q 007951 172 IYETI--SGSDLVLLLISDAAQADNYEKIFSCMKPNSILG 209 (583)
Q Consensus 172 ~~Eav--~~ADIVILavpd~a~~~Vl~eI~~~Lk~GaiL~ 209 (583)
..|.+ .++|+||=++.+....+++.+. ++.|.-|+
T Consensus 83 ~~ell~~~~~DVvVd~t~~~~a~~~~~~a---l~~G~~VV 119 (336)
T PRK08374 83 PEEIVEEIDADIVVDVTNDKNAHEWHLEA---LKEGKSVV 119 (336)
T ss_pred HHHHHhcCCCCEEEECCCcHHHHHHHHHH---HhhCCcEE
Confidence 66666 4799999999877666666543 44565443
No 471
>PRK08265 short chain dehydrogenase; Provisional
Probab=80.54 E-value=9.2 Score=38.22 Aligned_cols=86 Identities=21% Similarity=0.100 Sum_probs=50.6
Q ss_pred hcCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEec
Q 007951 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (583)
Q Consensus 108 l~gikkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILav 186 (583)
+++ +++-|.|. |-+|.++++.|.+. |.+|++..|+.++..+.+.+.+-. ...+ .+|+ .
T Consensus 4 ~~~-k~vlItGas~gIG~~ia~~l~~~------G~~V~~~~r~~~~~~~~~~~~~~~---------~~~~-~~Dl----~ 62 (261)
T PRK08265 4 LAG-KVAIVTGGATLIGAAVARALVAA------GARVAIVDIDADNGAAVAASLGER---------ARFI-ATDI----T 62 (261)
T ss_pred CCC-CEEEEECCCChHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHhCCe---------eEEE-EecC----C
Confidence 567 89999996 78999999999988 998877766533222222221100 0000 1222 3
Q ss_pred cchHHHHHHHHHHhcCCCCcEEEEecCc
Q 007951 187 SDAAQADNYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 187 pd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
.+....++++++...+.+=.+|+..+|.
T Consensus 63 ~~~~~~~~~~~~~~~~g~id~lv~~ag~ 90 (261)
T PRK08265 63 DDAAIERAVATVVARFGRVDILVNLACT 90 (261)
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 3445556777766554333356666664
No 472
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=80.53 E-value=8.7 Score=40.27 Aligned_cols=46 Identities=20% Similarity=0.170 Sum_probs=36.1
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCc
Q 007951 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF 162 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~ 162 (583)
.| .+|.|+|.|.+|...++-++.. |.+|++..+ ++...+.+++.|+
T Consensus 166 ~g-~~VlV~G~G~vG~~a~~~a~~~------G~~vi~~~~-~~~~~~~~~~~Ga 211 (349)
T TIGR03201 166 KG-DLVIVIGAGGVGGYMVQTAKAM------GAAVVAIDI-DPEKLEMMKGFGA 211 (349)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCeEEEEcC-CHHHHHHHHHhCC
Confidence 46 8999999999999999998887 887655444 4445677787776
No 473
>COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=80.37 E-value=3.5 Score=41.98 Aligned_cols=78 Identities=22% Similarity=0.289 Sum_probs=55.4
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc----eEEEEecCCcccHHHHHHcCceecCCCcCC-Hhhh-----hccCCe
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAEARAAGFTEENGTLGD-IYET-----ISGSDL 181 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~----~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d-~~Ea-----v~~ADI 181 (583)
.|++|||-||+|.-+..-+.++ |- .+.+|.+..+.-..+|.+.|+.. ... .+-+ .++-|+
T Consensus 5 ~kvaiigsgni~tdlm~k~lr~------g~~le~~~mvgidp~sdglaraarlgv~t----t~egv~~ll~~p~~~di~l 74 (310)
T COG4569 5 RKVAIIGSGNIGTDLMIKILRH------GQHLEMAVMVGIDPQSDGLARAARLGVAT----THEGVIGLLNMPEFADIDL 74 (310)
T ss_pred ceEEEEccCcccHHHHHHHHhc------CCcccceeEEccCCCccHHHHHHhcCCcc----hhhHHHHHHhCCCCCCcce
Confidence 5899999999999987776665 42 56788888888888888888863 111 1111 245569
Q ss_pred EEEeccchHHHHHHHHHH
Q 007951 182 VLLLISDAAQADNYEKIF 199 (583)
Q Consensus 182 VILavpd~a~~~Vl~eI~ 199 (583)
||=+++-..+.+-...++
T Consensus 75 vfdatsa~~h~~~a~~~a 92 (310)
T COG4569 75 VFDATSAGAHVKNAAALA 92 (310)
T ss_pred EEeccccchhhcchHhHH
Confidence 999999888876555443
No 474
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=80.34 E-value=9.7 Score=38.95 Aligned_cols=88 Identities=19% Similarity=0.176 Sum_probs=57.2
Q ss_pred hcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhh-hhccCCeEEEec
Q 007951 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE-TISGSDLVLLLI 186 (583)
Q Consensus 108 l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~E-av~~ADIVILav 186 (583)
.+| .+|.|.|.|.+|.+.++-++.. |.+|++..+.. ...+.+.+.|... ..+..+ .-+..|+++.+.
T Consensus 166 ~~~-~~vlV~g~g~vg~~~~~la~~~------g~~v~~~~~~~-~~~~~~~~~g~~~----~~~~~~~~~~~vD~vi~~~ 233 (329)
T cd08298 166 KPG-QRLGLYGFGASAHLALQIARYQ------GAEVFAFTRSG-EHQELARELGADW----AGDSDDLPPEPLDAAIIFA 233 (329)
T ss_pred CCC-CEEEEECCcHHHHHHHHHHHHC------CCeEEEEcCCh-HHHHHHHHhCCcE----EeccCccCCCcccEEEEcC
Confidence 345 7999999999999998888877 88876655544 4456667777632 111111 123578888876
Q ss_pred cchHHHHHHHHHHhcCCCCcEEEE
Q 007951 187 SDAAQADNYEKIFSCMKPNSILGL 210 (583)
Q Consensus 187 pd~a~~~Vl~eI~~~Lk~GaiL~~ 210 (583)
+.. ..++++...++++..++.
T Consensus 234 ~~~---~~~~~~~~~l~~~G~~v~ 254 (329)
T cd08298 234 PVG---ALVPAALRAVKKGGRVVL 254 (329)
T ss_pred CcH---HHHHHHHHHhhcCCEEEE
Confidence 543 346666667777665543
No 475
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=80.24 E-value=2.7 Score=42.67 Aligned_cols=32 Identities=28% Similarity=0.397 Sum_probs=27.1
Q ss_pred EEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCC
Q 007951 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (583)
Q Consensus 113 kIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~ 150 (583)
+|.|||.|.-|.+.|..|.+. |++|++..+..
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~------G~~v~i~E~~~ 34 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARA------GIDVTIIERRP 34 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHT------TCEEEEEESSS
T ss_pred eEEEECCCHHHHHHHHHHHhc------ccccccchhcc
Confidence 689999999999999999999 99998887753
No 476
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=80.18 E-value=3.1 Score=47.97 Aligned_cols=40 Identities=25% Similarity=0.350 Sum_probs=32.2
Q ss_pred hhhcCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCcc
Q 007951 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR 152 (583)
Q Consensus 106 ~~l~gikkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~ 152 (583)
+..+| ++|.|.|. |.+|.++++.|.+. |++|++..|..++
T Consensus 76 ~~~~g-KvVLVTGATGgIG~aLAr~LLk~------G~~Vval~Rn~ek 116 (576)
T PLN03209 76 DTKDE-DLAFVAGATGKVGSRTVRELLKL------GFRVRAGVRSAQR 116 (576)
T ss_pred ccCCC-CEEEEECCCCHHHHHHHHHHHHC------CCeEEEEeCCHHH
Confidence 34456 88999995 89999999999988 9998877776443
No 477
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=80.09 E-value=9.9 Score=39.59 Aligned_cols=95 Identities=17% Similarity=0.153 Sum_probs=56.3
Q ss_pred hcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHH----cCceec-CCCcCCHhhh-hccCCe
Q 007951 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----AGFTEE-NGTLGDIYET-ISGSDL 181 (583)
Q Consensus 108 l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~----~G~~~~-d~t~~d~~Ea-v~~ADI 181 (583)
..| ++|.-||+|+-. ++..+... |..-+++.+.++...+.|++ .++... .....+.... -...|+
T Consensus 158 ~~g-~~VLDvGcGsG~--lai~aa~~------g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDl 228 (288)
T TIGR00406 158 LKD-KNVIDVGCGSGI--LSIAALKL------GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADV 228 (288)
T ss_pred CCC-CEEEEeCCChhH--HHHHHHHc------CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceE
Confidence 356 899999999933 33444444 54345677776665555554 232100 0001111111 136799
Q ss_pred EEEeccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 182 VLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 182 VILavpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
|+.-........+++++...|+||..++++
T Consensus 229 Vvan~~~~~l~~ll~~~~~~LkpgG~li~s 258 (288)
T TIGR00406 229 IVANILAEVIKELYPQFSRLVKPGGWLILS 258 (288)
T ss_pred EEEecCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 987665556667888899999999876544
No 478
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=79.90 E-value=4.8 Score=44.04 Aligned_cols=66 Identities=29% Similarity=0.322 Sum_probs=42.5
Q ss_pred EEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccH----HHHHHcCceecCCCcCCH---hhhhccCCeEEE
Q 007951 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF----AEARAAGFTEENGTLGDI---YETISGSDLVLL 184 (583)
Q Consensus 113 kIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~----~~A~~~G~~~~d~t~~d~---~Eav~~ADIVIL 184 (583)
||.|||.|..|.+.|+.|.+. |+.|.+.++...... +.-...|+...-+...+. .+...+.|+|+.
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~------G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~~~~~~d~vv~ 74 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQ------GWEVVVSDRNDSPELLERQQELEQEGITVKLGKPLELESFQPWLDQPDLVVV 74 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHC------CCEEEEECCCCchhhHHHHHHHHHcCCEEEECCccchhhhhHHhhcCCEEEE
Confidence 689999999999999999998 998877665432212 123345765311111111 135678999888
No 479
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=79.71 E-value=10 Score=39.47 Aligned_cols=91 Identities=20% Similarity=0.311 Sum_probs=56.0
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceec-CCCcCCHh----hhh--ccCCe
Q 007951 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIY----ETI--SGSDL 181 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~-d~t~~d~~----Eav--~~ADI 181 (583)
+| .+|.|.|.|.+|.+.++-.+.. |..+++..+..++..+.+++.|+..- +....+.. +.. +..|+
T Consensus 166 ~g-~~vlI~g~g~iG~~~~~lak~~------G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~~~~~~~d~ 238 (351)
T cd08285 166 LG-DTVAVFGIGPVGLMAVAGARLR------GAGRIIAVGSRPNRVELAKEYGATDIVDYKNGDVVEQILKLTGGKGVDA 238 (351)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEEeCCHHHHHHHHHcCCceEecCCCCCHHHHHHHHhCCCCCcE
Confidence 46 8999999999999999888877 88544555555566788888886310 10001111 122 24788
Q ss_pred EEEeccchHHHHHHHHHHhcCCCCcEEE
Q 007951 182 VLLLISDAAQADNYEKIFSCMKPNSILG 209 (583)
Q Consensus 182 VILavpd~a~~~Vl~eI~~~Lk~GaiL~ 209 (583)
|+-++... ..+.+....++++..++
T Consensus 239 vld~~g~~---~~~~~~~~~l~~~G~~v 263 (351)
T cd08285 239 VIIAGGGQ---DTFEQALKVLKPGGTIS 263 (351)
T ss_pred EEECCCCH---HHHHHHHHHhhcCCEEE
Confidence 88887742 23444455565655444
No 480
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=79.69 E-value=4.4 Score=44.91 Aligned_cols=77 Identities=17% Similarity=0.133 Sum_probs=44.0
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhc--CC-ceEEEEecCCcccHH--------HHHHcCceecCCCcCCHhhhhccCC
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAK--SD-IVVKVGLRKGSRSFA--------EARAAGFTEENGTLGDIYETISGSD 180 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g--~G-~~ViVg~r~~s~s~~--------~A~~~G~~~~d~t~~d~~Eav~~AD 180 (583)
+||+|||.|+- ....|...|.... .. -+++ ..+.++...+ .+.+.|....-..+.|.++++++||
T Consensus 1 ~KI~iIGgGS~---~tp~li~~l~~~~~~l~~~ei~-L~Did~~Rl~~v~~l~~~~~~~~g~~~~v~~ttD~~~Al~gAD 76 (425)
T cd05197 1 VKIAIIGGGSS---FTPELVSGLLKTPEELPISEVT-LYDIDEERLDIILTIAKRYVEEVGADIKFEKTMDLEDAIIDAD 76 (425)
T ss_pred CEEEEECCchH---hHHHHHHHHHcChhhCCCCEEE-EEcCCHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCCCC
Confidence 58999999993 4444443322211 12 2444 4444443222 2234442111123578999999999
Q ss_pred eEEEeccchHHH
Q 007951 181 LVLLLISDAAQA 192 (583)
Q Consensus 181 IVILavpd~a~~ 192 (583)
.||..+-.....
T Consensus 77 fVi~~irvGg~~ 88 (425)
T cd05197 77 FVINQFRVGGLT 88 (425)
T ss_pred EEEEeeecCChH
Confidence 999988766553
No 481
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=79.66 E-value=9.7 Score=39.51 Aligned_cols=91 Identities=21% Similarity=0.266 Sum_probs=55.7
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceec-CCCcCC-HhhhhccCCeEEEec
Q 007951 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGD-IYETISGSDLVLLLI 186 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~-d~t~~d-~~Eav~~ADIVILav 186 (583)
+| .+|.|.|.|.+|.+.++-++.. |.++++..+. ....+.+.+.|...- +....+ ..+.-...|+|+-++
T Consensus 169 ~g-~~vlV~g~g~vG~~~~~~a~~~------G~~v~~~~~~-~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~d~v~~~~ 240 (337)
T cd05283 169 PG-KRVGVVGIGGLGHLAVKFAKAL------GAEVTAFSRS-PSKKEDALKLGADEFIATKDPEAMKKAAGSLDLIIDTV 240 (337)
T ss_pred CC-CEEEEECCcHHHHHHHHHHHHc------CCeEEEEcCC-HHHHHHHHHcCCcEEecCcchhhhhhccCCceEEEECC
Confidence 46 7899999999999999888887 8877665544 344666777775310 000001 112235679999888
Q ss_pred cchHHHHHHHHHHhcCCCCcEEEE
Q 007951 187 SDAAQADNYEKIFSCMKPNSILGL 210 (583)
Q Consensus 187 pd~a~~~Vl~eI~~~Lk~GaiL~~ 210 (583)
+... .+.+....++++..++.
T Consensus 241 g~~~---~~~~~~~~l~~~G~~v~ 261 (337)
T cd05283 241 SASH---DLDPYLSLLKPGGTLVL 261 (337)
T ss_pred CCcc---hHHHHHHHhcCCCEEEE
Confidence 8652 23444455555554443
No 482
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=79.65 E-value=6.4 Score=42.75 Aligned_cols=94 Identities=13% Similarity=0.139 Sum_probs=49.9
Q ss_pred CEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHH----cCceecCCCcCCHhhh-hccCCeEEEe
Q 007951 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYET-ISGSDLVLLL 185 (583)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~----~G~~~~d~t~~d~~Ea-v~~ADIVILa 185 (583)
+||+|||. |--|.-+.+-|... . .+++.....+..+-...... .|.....-...+.+++ ..+||+||+|
T Consensus 3 ~kV~IvGasGYtG~EL~rlL~~H-p----~ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~~~~~~DvvFla 77 (349)
T COG0002 3 IKVGIVGASGYTGLELLRLLAGH-P----DVELILISSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKIELDECDVVFLA 77 (349)
T ss_pred ceEEEEcCCCCcHHHHHHHHhcC-C----CeEEEEeechhhcCCchHHhCcccccccccccccCChhhhhcccCCEEEEe
Confidence 79999995 56666655555432 1 34544332221110111111 1211000001233333 4458999999
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEecC
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLSHG 213 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a~G 213 (583)
+|+..-.++..++.. +|..|+|.++
T Consensus 78 lPhg~s~~~v~~l~~---~g~~VIDLSa 102 (349)
T COG0002 78 LPHGVSAELVPELLE---AGCKVIDLSA 102 (349)
T ss_pred cCchhHHHHHHHHHh---CCCeEEECCc
Confidence 999988888887643 4555787766
No 483
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=79.54 E-value=7.6 Score=38.19 Aligned_cols=86 Identities=19% Similarity=0.205 Sum_probs=51.2
Q ss_pred hcCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEE--
Q 007951 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL-- 184 (583)
Q Consensus 108 l~gikkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVIL-- 184 (583)
++| ++|.|.|. |.+|.++++.|.+. |++|++..|..++..+...+ +. +. .+++.++
T Consensus 5 ~~~-~~vlItGasg~iG~~la~~l~~~------G~~v~~~~r~~~~~~~~~~~--~~----------~~--~~~~~~~~~ 63 (262)
T PRK13394 5 LNG-KTAVVTGAASGIGKEIALELARA------GAAVAIADLNQDGANAVADE--IN----------KA--GGKAIGVAM 63 (262)
T ss_pred CCC-CEEEEECCCChHHHHHHHHHHHC------CCeEEEEeCChHHHHHHHHH--HH----------hc--CceEEEEEC
Confidence 567 89999997 89999999999988 99887666654322222211 11 00 1122222
Q ss_pred -eccchHHHHHHHHHHhcCCCCcEEEEecCc
Q 007951 185 -LISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 185 -avpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
...+....++++++.....+=.+|++.+|.
T Consensus 64 Dl~~~~~~~~~~~~~~~~~~~~d~vi~~ag~ 94 (262)
T PRK13394 64 DVTNEDAVNAGIDKVAERFGSVDILVSNAGI 94 (262)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCEEEECCcc
Confidence 133444456666665544443467777775
No 484
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=79.48 E-value=4.5 Score=45.06 Aligned_cols=77 Identities=18% Similarity=0.043 Sum_probs=43.8
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhc--CC-ceEEEEecCCcccHH--------HHHHcCceecCCCcCCHhhhhccCC
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAK--SD-IVVKVGLRKGSRSFA--------EARAAGFTEENGTLGDIYETISGSD 180 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g--~G-~~ViVg~r~~s~s~~--------~A~~~G~~~~d~t~~d~~Eav~~AD 180 (583)
+||+|||.|+. ....|...|.... .+ -++ +..+.++...+ ...+.|....-..+.|.+|++++||
T Consensus 1 ~KI~iIGaGS~---~tp~li~~l~~~~~~l~~~ei-~L~DId~~rl~~v~~l~~~~~~~~g~~~~v~~Ttdr~eAl~gAD 76 (437)
T cd05298 1 FKIVIAGGGST---YTPGIVKSLLDRKEDFPLREL-VLYDIDAERQEKVAEAVKILFKENYPEIKFVYTTDPEEAFTDAD 76 (437)
T ss_pred CeEEEECCcHH---HHHHHHHHHHhCcccCCCCEE-EEECCCHHHHHHHHHHHHHHHHhhCCCeEEEEECCHHHHhCCCC
Confidence 69999999994 4444444332221 12 244 44455442222 1222332111123578999999999
Q ss_pred eEEEeccchHHH
Q 007951 181 LVLLLISDAAQA 192 (583)
Q Consensus 181 IVILavpd~a~~ 192 (583)
.||..+-.....
T Consensus 77 fVi~~irvGg~~ 88 (437)
T cd05298 77 FVFAQIRVGGYA 88 (437)
T ss_pred EEEEEeeeCCch
Confidence 999988876543
No 485
>PLN02740 Alcohol dehydrogenase-like
Probab=79.38 E-value=11 Score=40.21 Aligned_cols=48 Identities=21% Similarity=0.377 Sum_probs=36.6
Q ss_pred hcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHHcCce
Q 007951 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFT 163 (583)
Q Consensus 108 l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~~~A~~~G~~ 163 (583)
..| .+|.|+|.|.+|...++-++.. |. +|++ .+.++...+.+++.|..
T Consensus 197 ~~g-~~VlV~G~G~vG~~a~q~ak~~------G~~~Vi~-~~~~~~r~~~a~~~Ga~ 245 (381)
T PLN02740 197 QAG-SSVAIFGLGAVGLAVAEGARAR------GASKIIG-VDINPEKFEKGKEMGIT 245 (381)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHC------CCCcEEE-EcCChHHHHHHHHcCCc
Confidence 346 7999999999999999988887 87 4544 44445567888888863
No 486
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=79.17 E-value=20 Score=34.76 Aligned_cols=37 Identities=22% Similarity=0.264 Sum_probs=30.8
Q ss_pred hcCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCc
Q 007951 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (583)
Q Consensus 108 l~gikkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s 151 (583)
+++ ++|.|+|. |.+|.++++.|.+. |++|++..|..+
T Consensus 3 ~~~-~~vlItGa~g~iG~~~a~~l~~~------G~~V~~~~r~~~ 40 (238)
T PRK05786 3 LKG-KKVAIIGVSEGLGYAVAYFALKE------GAQVCINSRNEN 40 (238)
T ss_pred cCC-cEEEEECCCchHHHHHHHHHHHC------CCEEEEEeCCHH
Confidence 567 89999996 67999999999988 998887777544
No 487
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=78.84 E-value=11 Score=38.52 Aligned_cols=90 Identities=21% Similarity=0.186 Sum_probs=52.5
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCce-EEEEecCCcccHHHHHHcCcee-cCCCcCCHhh----hhccCCeE
Q 007951 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGFTE-ENGTLGDIYE----TISGSDLV 182 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~-ViVg~r~~s~s~~~A~~~G~~~-~d~t~~d~~E----av~~ADIV 182 (583)
+| .+|.|+|.|.+|.+.++.++.. |.+ +++..+ +++..+.+.+.|... -+....+..+ .-+..|+|
T Consensus 159 ~g-~~vlI~g~g~vg~~~~~la~~~------G~~~v~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~vd~v 230 (334)
T cd08234 159 PG-DSVLVFGAGPIGLLLAQLLKLN------GASRVTVAEP-NEEKLELAKKLGATETVDPSREDPEAQKEDNPYGFDVV 230 (334)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCcEEEEECC-CHHHHHHHHHhCCeEEecCCCCCHHHHHHhcCCCCcEE
Confidence 56 8999999999999999888887 886 544434 344456666666521 0100011110 12458999
Q ss_pred EEeccchHHHHHHHHHHhcCCCCcEEE
Q 007951 183 LLLISDAAQADNYEKIFSCMKPNSILG 209 (583)
Q Consensus 183 ILavpd~a~~~Vl~eI~~~Lk~GaiL~ 209 (583)
+-++... ..+.+....++++..++
T Consensus 231 ~~~~~~~---~~~~~~~~~l~~~G~~v 254 (334)
T cd08234 231 IEATGVP---KTLEQAIEYARRGGTVL 254 (334)
T ss_pred EECCCCh---HHHHHHHHHHhcCCEEE
Confidence 9888632 23334444455554443
No 488
>PRK09186 flagellin modification protein A; Provisional
Probab=78.82 E-value=8.7 Score=37.73 Aligned_cols=35 Identities=20% Similarity=0.250 Sum_probs=29.3
Q ss_pred hcCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecC
Q 007951 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (583)
Q Consensus 108 l~gikkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~ 149 (583)
++| |+|.|.|. |.+|.+++..|.+. |++|++..+.
T Consensus 2 ~~~-k~vlItGas~giG~~~a~~l~~~------g~~v~~~~r~ 37 (256)
T PRK09186 2 LKG-KTILITGAGGLIGSALVKAILEA------GGIVIAADID 37 (256)
T ss_pred CCC-CEEEEECCCchHHHHHHHHHHHC------CCEEEEEecC
Confidence 467 89999996 79999999999988 9887776554
No 489
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=78.76 E-value=11 Score=39.83 Aligned_cols=86 Identities=19% Similarity=0.178 Sum_probs=51.2
Q ss_pred hcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHHcCceec-CCCc--CCHhhhh-----cc
Q 007951 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTL--GDIYETI-----SG 178 (583)
Q Consensus 108 l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~~~A~~~G~~~~-d~t~--~d~~Eav-----~~ 178 (583)
.+| .+|.|+|.|.+|...++-++.. |. +|++.. ..+..++.+++.|+..- +..- .+..+.+ ..
T Consensus 183 ~~g-~~vlV~G~g~vG~~~~~~a~~~------G~~~Vi~~~-~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~g 254 (365)
T cd08277 183 EPG-STVAVFGLGAVGLSAIMGAKIA------GASRIIGVD-INEDKFEKAKEFGATDFINPKDSDKPVSEVIREMTGGG 254 (365)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEEe-CCHHHHHHHHHcCCCcEeccccccchHHHHHHHHhCCC
Confidence 346 8999999999999999988877 87 454444 34455777777776210 0000 0112222 24
Q ss_pred CCeEEEeccchHHHHHHHHHHhcCCC
Q 007951 179 SDLVLLLISDAAQADNYEKIFSCMKP 204 (583)
Q Consensus 179 ADIVILavpd~a~~~Vl~eI~~~Lk~ 204 (583)
.|+|+-++.... .+.+....+++
T Consensus 255 ~d~vid~~g~~~---~~~~~~~~l~~ 277 (365)
T cd08277 255 VDYSFECTGNAD---LMNEALESTKL 277 (365)
T ss_pred CCEEEECCCChH---HHHHHHHhccc
Confidence 788888776432 33444445544
No 490
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=78.75 E-value=7.9 Score=37.72 Aligned_cols=36 Identities=22% Similarity=0.191 Sum_probs=30.3
Q ss_pred hcCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCC
Q 007951 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (583)
Q Consensus 108 l~gikkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~ 150 (583)
+++ ++|.|+|. |.+|.++++.|.+. |++|++..|..
T Consensus 3 ~~~-~~vlItGasg~iG~~l~~~l~~~------G~~V~~~~r~~ 39 (251)
T PRK07231 3 LEG-KVAIVTGASSGIGEGIARRFAAE------GARVVVTDRNE 39 (251)
T ss_pred cCC-cEEEEECCCChHHHHHHHHHHHC------CCEEEEEeCCH
Confidence 567 89999995 89999999999988 99977766653
No 491
>PRK10083 putative oxidoreductase; Provisional
Probab=78.64 E-value=19 Score=37.03 Aligned_cols=92 Identities=14% Similarity=0.133 Sum_probs=54.5
Q ss_pred hcCCCEEEEEccchhHHHHHHHHHH-hhhhhcCCceEEEEecCCcccHHHHHHcCceec-CCCcCCHhhhhc----cCCe
Q 007951 108 FNGINQIGVIGWGSQGPAQAQNLRD-SLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS----GSDL 181 (583)
Q Consensus 108 l~gikkIgIIG~G~mG~A~A~nLrd-sl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~-d~t~~d~~Eav~----~ADI 181 (583)
..| .+|.|+|.|.+|.+.++-++. . |.++++..+..+...+.+.+.|+..- +..-.+..+.+. +.|+
T Consensus 159 ~~g-~~vlI~g~g~vG~~~~~~a~~~~------G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~g~~~d~ 231 (339)
T PRK10083 159 TEQ-DVALIYGAGPVGLTIVQVLKGVY------NVKAVIVADRIDERLALAKESGADWVINNAQEPLGEALEEKGIKPTL 231 (339)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHhC------CCCEEEEEcCCHHHHHHHHHhCCcEEecCccccHHHHHhcCCCCCCE
Confidence 456 899999999999998887774 4 77655555555566778888886320 100112333332 3468
Q ss_pred EEEeccchHHHHHHHHHHhcCCCCcEEE
Q 007951 182 VLLLISDAAQADNYEKIFSCMKPNSILG 209 (583)
Q Consensus 182 VILavpd~a~~~Vl~eI~~~Lk~GaiL~ 209 (583)
|+-++... ..+.+....++++-.++
T Consensus 232 vid~~g~~---~~~~~~~~~l~~~G~~v 256 (339)
T PRK10083 232 IIDAACHP---SILEEAVTLASPAARIV 256 (339)
T ss_pred EEECCCCH---HHHHHHHHHhhcCCEEE
Confidence 88777632 12334344555554444
No 492
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=78.44 E-value=8.7 Score=38.12 Aligned_cols=78 Identities=17% Similarity=0.069 Sum_probs=41.6
Q ss_pred EEEEEccchhHHHH-HHHHHHhhhhhcCCc-eEEEEecCCcccHH--------HHHHcCceecCCCcCCHhhhhccCCeE
Q 007951 113 QIGVIGWGSQGPAQ-AQNLRDSLAEAKSDI-VVKVGLRKGSRSFA--------EARAAGFTEENGTLGDIYETISGSDLV 182 (583)
Q Consensus 113 kIgIIG~G~mG~A~-A~nLrdsl~~~g~G~-~ViVg~r~~s~s~~--------~A~~~G~~~~d~t~~d~~Eav~~ADIV 182 (583)
||+|||.|+.--+. ...+...-+ .... ++. ..+.++...+ ..++.|....-....|.+|++++||+|
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~--~l~~~ei~-L~Did~~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eAl~gADfV 77 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTE--ELSGSEIV-LMDIDEERLEIVERLARRMVEEAGADLKVEATTDRREALEGADFV 77 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTT--TSTEEEEE-EE-SCHHHHHHHHHHHHHHHHHCTTSSEEEEESSHHHHHTTESEE
T ss_pred CEEEECCchHhhHHHHHHHHhcCc--cCCCcEEE-EEcCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhCCCCEE
Confidence 79999999876653 222222201 0122 444 4444443222 233444322112357899999999999
Q ss_pred EEeccchHHHH
Q 007951 183 LLLISDAAQAD 193 (583)
Q Consensus 183 ILavpd~a~~~ 193 (583)
|..+-+.....
T Consensus 78 i~~irvGg~~~ 88 (183)
T PF02056_consen 78 INQIRVGGLEA 88 (183)
T ss_dssp EE---TTHHHH
T ss_pred EEEeeecchHH
Confidence 99988776654
No 493
>PRK07060 short chain dehydrogenase; Provisional
Probab=78.34 E-value=8.5 Score=37.42 Aligned_cols=36 Identities=28% Similarity=0.314 Sum_probs=30.5
Q ss_pred hcCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCC
Q 007951 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (583)
Q Consensus 108 l~gikkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~ 150 (583)
+++ ++|.|+|. |.+|..+++.|.+. |++|++..|..
T Consensus 7 ~~~-~~~lItGa~g~iG~~~a~~l~~~------g~~V~~~~r~~ 43 (245)
T PRK07060 7 FSG-KSVLVTGASSGIGRACAVALAQR------GARVVAAARNA 43 (245)
T ss_pred cCC-CEEEEeCCcchHHHHHHHHHHHC------CCEEEEEeCCH
Confidence 677 89999997 79999999999988 98877766643
No 494
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=78.28 E-value=7.7 Score=41.80 Aligned_cols=70 Identities=14% Similarity=0.003 Sum_probs=45.5
Q ss_pred h-cCCCEEEEEccc-------hhHHHHHHHHHHhhhhhcCCceEEEEec-CC----cccHHH----HHHcCceecCCCcC
Q 007951 108 F-NGINQIGVIGWG-------SQGPAQAQNLRDSLAEAKSDIVVKVGLR-KG----SRSFAE----ARAAGFTEENGTLG 170 (583)
Q Consensus 108 l-~gikkIgIIG~G-------~mG~A~A~nLrdsl~~~g~G~~ViVg~r-~~----s~s~~~----A~~~G~~~~d~t~~ 170 (583)
+ +| .||+|++.| ++..+++..+..- |.++++... +. ....+. +.+.|.... ...
T Consensus 166 ~~~g-~ki~i~~~gd~~~~~~~v~~S~~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~ 236 (335)
T PRK04523 166 TLRG-KKYVLTWTYHPKPLNTAVANSALLIATRL------GMDVTLLCPTPDYILDERYMDWAEQNAAESGGSLT--VSH 236 (335)
T ss_pred ccCC-CEEEEEEeccCcccccHHHHHHHHHHHHc------CCEEEEECCchhhCCCHHHHHHHHHHHHHcCCeEE--EEc
Confidence 5 78 889776543 6788888877765 888877665 31 112222 344563220 146
Q ss_pred CHhhhhccCCeEEEec
Q 007951 171 DIYETISGSDLVLLLI 186 (583)
Q Consensus 171 d~~Eav~~ADIVILav 186 (583)
+..|++++||+|..-.
T Consensus 237 d~~ea~~~aDvvy~~~ 252 (335)
T PRK04523 237 DIDSAYAGADVVYAKS 252 (335)
T ss_pred CHHHHhCCCCEEEece
Confidence 8899999999999854
No 495
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=78.24 E-value=9.2 Score=32.81 Aligned_cols=94 Identities=19% Similarity=0.159 Sum_probs=55.5
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcC----ceec-CCCcCCH---hhhhccCC
Q 007951 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG----FTEE-NGTLGDI---YETISGSD 180 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G----~~~~-d~t~~d~---~Eav~~AD 180 (583)
+| .+|--||+|.=..++...-+.. +.+ +++.+.++...+.|++.- .... .-...+. .+...+.|
T Consensus 1 p~-~~vLDlGcG~G~~~~~l~~~~~------~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D 72 (112)
T PF12847_consen 1 PG-GRVLDLGCGTGRLSIALARLFP------GAR-VVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFD 72 (112)
T ss_dssp TT-CEEEEETTTTSHHHHHHHHHHT------TSE-EEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEE
T ss_pred CC-CEEEEEcCcCCHHHHHHHhcCC------CCE-EEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCC
Confidence 45 7899999998444433322224 667 467777776666655432 1100 0001233 34456789
Q ss_pred eEEEec-----cc--hHHHHHHHHHHhcCCCCcEEEE
Q 007951 181 LVLLLI-----SD--AAQADNYEKIFSCMKPNSILGL 210 (583)
Q Consensus 181 IVILav-----pd--~a~~~Vl~eI~~~Lk~GaiL~~ 210 (583)
+|++.- -. ....++++.+...|+||-.+++
T Consensus 73 ~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi 109 (112)
T PF12847_consen 73 LVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVI 109 (112)
T ss_dssp EEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEE
Confidence 998866 11 2345688899999999887654
No 496
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=78.12 E-value=11 Score=37.54 Aligned_cols=36 Identities=19% Similarity=0.170 Sum_probs=29.7
Q ss_pred hcCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCC
Q 007951 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (583)
Q Consensus 108 l~gikkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~ 150 (583)
+++ +++-|+|. |-+|.++++.|.+. |.+|++..|..
T Consensus 3 ~~~-k~vlItGas~gIG~~ia~~l~~~------G~~V~~~~r~~ 39 (262)
T TIGR03325 3 LKG-EVVLVTGGASGLGRAIVDRFVAE------GARVAVLDKSA 39 (262)
T ss_pred cCC-cEEEEECCCChHHHHHHHHHHHC------CCEEEEEeCCH
Confidence 567 89999996 57999999999988 99987766643
No 497
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=78.11 E-value=5.8 Score=43.97 Aligned_cols=38 Identities=21% Similarity=0.343 Sum_probs=32.5
Q ss_pred hhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCc
Q 007951 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (583)
Q Consensus 107 ~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s 151 (583)
.|+| ++|+|=|+||.|...|+-|.+. |.+|++..+...
T Consensus 204 ~l~G-~rVaVQG~GNVg~~aa~~l~~~------GAkvva~sds~g 241 (411)
T COG0334 204 DLEG-ARVAVQGFGNVGQYAAEKLHEL------GAKVVAVSDSKG 241 (411)
T ss_pred CcCC-CEEEEECccHHHHHHHHHHHHc------CCEEEEEEcCCC
Confidence 3899 9999999999999999999887 888777665543
No 498
>PRK07877 hypothetical protein; Provisional
Probab=78.05 E-value=4.2 Score=48.10 Aligned_cols=113 Identities=16% Similarity=0.228 Sum_probs=64.8
Q ss_pred hhhhhhhhcccccceee---eccccccc-cchhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc--eEEEEecC--
Q 007951 78 VFKKDMISLADRDEYIV---RGGRDLFN-LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRK-- 149 (583)
Q Consensus 78 ~~~~~~~~~~~~~e~v~---~~~r~~f~-~~~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~--~ViVg~r~-- 149 (583)
+++...+..-+..|+.- .+.+-.|. ...+.|+. .+|+|||+| .|...|..|..+ |+ ++++.+..
T Consensus 71 pw~~~~v~~~~~~~~~~~r~~Rn~~~ig~~~Q~~L~~-~~V~IvG~G-lGs~~a~~Lara------GvvG~l~lvD~D~v 142 (722)
T PRK07877 71 PWRRTVVHLLGPREFRAVRLDRNRNKITAEEQERLGR-LRIGVVGLS-VGHAIAHTLAAE------GLCGELRLADFDTL 142 (722)
T ss_pred cchhheeecCCHHHhhHHHhhchhhhCCHHHHHHHhc-CCEEEEEec-HHHHHHHHHHHc------cCCCeEEEEcCCEE
Confidence 46666667777666541 12222332 23678888 999999999 899999999887 63 44443321
Q ss_pred C----------------cccHHHHHHc-----Cceec--CCCc--CCHhhhhccCCeEEEeccchHHHHHHHHH
Q 007951 150 G----------------SRSFAEARAA-----GFTEE--NGTL--GDIYETISGSDLVLLLISDAAQADNYEKI 198 (583)
Q Consensus 150 ~----------------s~s~~~A~~~-----G~~~~--d~t~--~d~~Eav~~ADIVILavpd~a~~~Vl~eI 198 (583)
+ .|....++.. .+..+ ...+ .+..+.++++|+|+-|+-.-...-++.+.
T Consensus 143 e~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~~~i~~~n~~~~l~~~DlVvD~~D~~~~R~~ln~~ 216 (722)
T PRK07877 143 ELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFTDGLTEDNVDAFLDGLDVVVEECDSLDVKVLLREA 216 (722)
T ss_pred cccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEeccCCHHHHHHHhcCCCEEEECCCCHHHHHHHHHH
Confidence 0 0111111110 11100 0111 23556788899999998877666666653
No 499
>PRK06138 short chain dehydrogenase; Provisional
Probab=78.04 E-value=12 Score=36.55 Aligned_cols=36 Identities=25% Similarity=0.200 Sum_probs=30.0
Q ss_pred hcCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCC
Q 007951 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (583)
Q Consensus 108 l~gikkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~ 150 (583)
++| ++|.|+|. |.+|.++++.|.+. |.+|++..|+.
T Consensus 3 ~~~-k~~lItG~sg~iG~~la~~l~~~------G~~v~~~~r~~ 39 (252)
T PRK06138 3 LAG-RVAIVTGAGSGIGRATAKLFARE------GARVVVADRDA 39 (252)
T ss_pred CCC-cEEEEeCCCchHHHHHHHHHHHC------CCeEEEecCCH
Confidence 567 89999996 79999999999988 88877666653
No 500
>PRK14031 glutamate dehydrogenase; Provisional
Probab=77.99 E-value=6.5 Score=44.04 Aligned_cols=36 Identities=17% Similarity=0.064 Sum_probs=30.7
Q ss_pred hhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEec
Q 007951 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR 148 (583)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r 148 (583)
..|+| ++|+|.|.|+.|...|+.|.+. |.+|++..+
T Consensus 224 ~~l~g-~rVaVQGfGNVG~~aA~~L~e~------GAkVVaVSD 259 (444)
T PRK14031 224 TDLKG-KVCLVSGSGNVAQYTAEKVLEL------GGKVVTMSD 259 (444)
T ss_pred CCcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEEC
Confidence 45889 9999999999999999999988 988765333
Done!