BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007952
(583 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 99.0 bits (245), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 68/210 (32%), Positives = 111/210 (52%), Gaps = 15/210 (7%)
Query: 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVG----GSITYND---HPYSK 62
L + ++ GE +++MGPSGSGK+T+LN++ G L +PT G +I ND +K
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNII-GCLDKPTEGEVYIDNIKTNDLDDDELTK 79
Query: 63 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD 122
+ KIGFV Q L P LT E + + + ++ +++ KRA++ + LE
Sbjct: 80 IRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEE--- 136
Query: 123 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA- 181
+SGG+++RV I + NP ++ D+PT LDS T +I+Q+L+ + E
Sbjct: 137 -RFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEED 195
Query: 182 GKTVVTTIHQPSSRLFHKFDKLILLGKGSL 211
GKTVV H + F +++I L G +
Sbjct: 196 GKTVVVVTHDINVARFG--ERIIYLKDGEV 223
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/210 (32%), Positives = 111/210 (52%), Gaps = 15/210 (7%)
Query: 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVG----GSITYND---HPYSK 62
L + ++ GE +++MGPSGSGK+T+LN++ G L +PT G +I ND +K
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNII-GCLDKPTEGEVYIDNIKTNDLDDDELTK 79
Query: 63 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD 122
+ KIGFV Q L P LT E + + + ++ +++ KRA++ + LE
Sbjct: 80 IRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEE--- 136
Query: 123 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA- 181
+SGG+++RV I + NP ++ D+PT LDS T +I+Q+L+ + E
Sbjct: 137 -RFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEED 195
Query: 182 GKTVVTTIHQPSSRLFHKFDKLILLGKGSL 211
GKTVV H + F +++I L G +
Sbjct: 196 GKTVVVVTHDINVARFG--ERIIYLKDGEV 223
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 95.1 bits (235), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 68/210 (32%), Positives = 107/210 (50%), Gaps = 15/210 (7%)
Query: 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVG----GSITYND---HPYSK 62
L + ++ GE +++ GPSGSGK+T LN++ G L +PT G +I ND +K
Sbjct: 21 LKNVNLNIKEGEFVSIXGPSGSGKSTXLNII-GCLDKPTEGEVYIDNIKTNDLDDDELTK 79
Query: 63 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD 122
+ KIGFV Q L P LT E + + + + +++ KRA++ + LE
Sbjct: 80 IRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGEERRKRALECLKXAELEE--- 136
Query: 123 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA- 181
+SGG+++RV I + NP ++ DEPT LDS T +I Q+L+ + E
Sbjct: 137 -RFANHKPNQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLNEED 195
Query: 182 GKTVVTTIHQPSSRLFHKFDKLILLGKGSL 211
GKTVV H + F +++I L G +
Sbjct: 196 GKTVVVVTHDINVARFG--ERIIYLKDGEV 223
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 92.8 bits (229), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 71/225 (31%), Positives = 125/225 (55%), Gaps = 18/225 (8%)
Query: 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS-- 63
E I + S+ G V AL+GPSGSGK+T+L+LL RL +P G+I+ + H +
Sbjct: 356 EVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLL-RLYDPA-SGTISLDGHDIRQLNP 413
Query: 64 --LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-- 119
L+SKIG V+Q+ +LF ++ E + Y A P+++T ++ + R +V N + R
Sbjct: 414 VWLRSKIGTVSQEPILF-SCSIAENIAYGA--DDPSSVTAEEIQ-RVAEVANAVAFIRNF 469
Query: 120 --CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD 177
+T++G V +SGG+++R+ I ++ NP +L LDE TS LD+ + + L
Sbjct: 470 PQGFNTVVGEKGVL-LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDR 528
Query: 178 IAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222
+ + G+TV+ H+ S+ + + +L +G + +GK E ++
Sbjct: 529 LMD-GRTVLVIAHRLST--IKNANMVAVLDQGKITEYGKHEELLS 570
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 92.8 bits (229), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 71/225 (31%), Positives = 124/225 (55%), Gaps = 18/225 (8%)
Query: 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS-- 63
E I + S+ G V AL+GPSGSGK+T+L+LL RL +P G+I+ + H +
Sbjct: 387 EVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLL-RLYDPA-SGTISLDGHDIRQLNP 444
Query: 64 --LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-- 119
L+SKIG V+Q+ +LF ++ E + Y A P+++T ++ + R +V N + R
Sbjct: 445 VWLRSKIGTVSQEPILF-SCSIAENIAYGA--DDPSSVTAEEIQ-RVAEVANAVAFIRNF 500
Query: 120 --CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD 177
+T++G V +SGG+++R+ I ++ NP +L LDE TS LD+ + + L
Sbjct: 501 PQGFNTVVGEKGVL-LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDR 559
Query: 178 IAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222
+ + G+TV+ H S+ + + +L +G + +GK E ++
Sbjct: 560 LMD-GRTVLVIAHHLST--IKNANMVAVLDQGKITEYGKHEELLS 601
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 92.4 bits (228), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 128/227 (56%), Gaps = 23/227 (10%)
Query: 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL- 64
E +IL G++ SV PG+ LAL+GPSG GK+T++ LL R + T+GG I + D K+L
Sbjct: 1091 EIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLE-RFYD-TLGGEI-FIDGSEIKTLN 1147
Query: 65 ----KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEK--RAIDVINELG-L 117
+S+I V+Q+ LF ++ E + Y P+++T Q E+ R ++ N + L
Sbjct: 1148 PEHTRSQIAIVSQEPTLF-DCSIAENIIYGL---DPSSVTMAQVEEAARLANIHNFIAEL 1203
Query: 118 ERCQDTMIGGSFVRG--VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQML 175
+T +G RG +SGG+++R+ I ++ NP +L LDE TS LD T + ++VQ
Sbjct: 1204 PEGFETRVGD---RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALD-TESEKVVQEA 1259
Query: 176 QDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222
D A G+T + H+ ++ + D + ++ G+++ G ++ M+
Sbjct: 1260 LDRAREGRTCIVIAHRLNTVM--NADCIAVVSNGTIIEKGTHTQLMS 1304
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/220 (29%), Positives = 107/220 (48%), Gaps = 17/220 (7%)
Query: 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSL 64
IL G+ VN G+ +AL+G SG GK+T+++LL R + + G IT + + L
Sbjct: 433 ILRGMNLRVNAGQTVALVGSSGCGKSTIISLLL-RYYD-VLKGKITIDGVDVRDINLEFL 490
Query: 65 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTM 124
+ + V+Q+ LF + T++E ++ + K A I L +T+
Sbjct: 491 RKNVAVVSQEPALF-NCTIEENISLGKEGITREEMVAACKMANAEKFIKTL--PNGYNTL 547
Query: 125 IGGSFVRG--VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG 182
+G RG +SGG+++R+ I ++ NP +L LDE TS LD+ + IVQ D A G
Sbjct: 548 VGD---RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESE-GIVQQALDKAAKG 603
Query: 183 KTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222
+T + H+ S+ D +I G ++ G MA
Sbjct: 604 RTTIIIAHRLST--IRNADLIISCKNGQVVEVGDHRALMA 641
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 120/243 (49%), Gaps = 22/243 (9%)
Query: 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVG----GSITYNDHPYSKSLK 65
++G++ V GE +AL+GPSG GKTT L +L+G + +PT G + ND P
Sbjct: 19 VDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAG-IYKPTSGEIYFDDVLVNDIPPK---Y 74
Query: 66 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMI 125
++G V Q+ L+PH+TV E + + R ++K + EKR +++ +L ++ D
Sbjct: 75 REVGMVFQNYALYPHMTVFENIAFPLRAR---RISKDEVEKRVVEIARKLLIDNLLDRK- 130
Query: 126 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRI---VQMLQDIAEAG 182
+SGG+++RV + ++ P +L DEP S LD+ + + ++ LQ E G
Sbjct: 131 ----PTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQ--QELG 184
Query: 183 KTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEFLL 242
T V H + + ++ + +G L+ +G E ++ + I P FL
Sbjct: 185 ITSVYVTHDQAEAMTMA-SRIAVFNQGKLVQYGTPDEVYDSPKNMFVASFIGNPPTNFLR 243
Query: 243 DLA 245
D +
Sbjct: 244 DFS 246
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 72/224 (32%), Positives = 116/224 (51%), Gaps = 13/224 (5%)
Query: 3 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP--- 59
+ E IL I S+ GE +A +G SG GK+TL+NL+ R + T G I + H
Sbjct: 350 NDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIP-RFYDVT-SGQILIDGHNIKD 407
Query: 60 -YSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE 118
+ SL+++IG V QD++LF TVKE + + + K A D I + L
Sbjct: 408 FLTGSLRNQIGLVQQDNILFSD-TVKENILLGRPTATDEEVVEAAKMANAHDFI--MNLP 464
Query: 119 RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI 178
+ DT +G V+ +SGG+++R+ I + NP +L LDE TS LD + I+Q D+
Sbjct: 465 QGYDTEVGERGVK-LSGGQKQRLSIARIFLNNPPILILDEATSALDLESE-SIIQEALDV 522
Query: 179 AEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222
+T + H+ S+ + H DK++++ G ++ G E +A
Sbjct: 523 LSKDRTTLIVAHRLST-ITHA-DKIVVIENGHIVETGTHRELIA 564
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 101/194 (52%), Gaps = 22/194 (11%)
Query: 8 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGG------SITY-NDHPY 60
+IL GI+ SV GE ++++G SGSGK+TLL +L G L PT G + Y N+
Sbjct: 18 EILKGISLSVKKGEFVSIIGASGSGKSTLLYIL-GLLDAPTEGKVFLEGKEVDYTNEKEL 76
Query: 61 SKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC 120
S K+GFV Q L P LT E + +L++ K++ ++R +++ELGL
Sbjct: 77 SLLRNRKLGFVFQFHYLIPELTALENVI-VPMLKMGKP--KKEAKERGEYLLSELGL--- 130
Query: 121 QDTMIGGSFVRG---VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD 177
G R +SGGE++RV I + P LLF DEPT LDS R++ +
Sbjct: 131 -----GDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLK 185
Query: 178 IAEAGKTVVTTIHQ 191
I E G ++V H+
Sbjct: 186 INEGGTSIVMVTHE 199
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 104/194 (53%), Gaps = 23/194 (11%)
Query: 8 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN-------DHPY 60
++L GI + GEV+ ++GPSGSGK+T L L+ L+E G I + D
Sbjct: 17 EVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLN--LLEDFDEGEIIIDGINLKAKDTNL 74
Query: 61 SKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEK---RAIDVINELGL 117
+K ++ ++G V Q LFPH+TV +T A P + K +EK +A+++++++GL
Sbjct: 75 NK-VREEVGMVFQRFNLFPHMTVLNNITLA-----PMKVRKWPREKAEAKAMELLDKVGL 128
Query: 118 ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD 177
+ ++ +SGG+ +RV I + + P ++ DEPTS LD ++ +++
Sbjct: 129 KDK-----AHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQ 183
Query: 178 IAEAGKTVVTTIHQ 191
+A G T+V H+
Sbjct: 184 LANEGMTMVVVTHE 197
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 89.4 bits (220), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 70/218 (32%), Positives = 114/218 (52%), Gaps = 19/218 (8%)
Query: 3 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS- 61
S +E IL G+ V G+ +AL+G SG GK+T + L+ RL +P + G ++ +
Sbjct: 399 SRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQ-RLYDP-LDGMVSIDGQDIRT 456
Query: 62 ---KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE 118
+ L+ IG V+Q+ VLF T+ E + Y + + K KE A D I + L
Sbjct: 457 INVRYLREIIGVVSQEPVLFA-TTIAENIRYGREDVTMDEIEKAVKEANAYDFI--MKLP 513
Query: 119 RCQDTMIGGSFVRG--VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQ 176
DT++G RG +SGG+++R+ I ++ NP +L LDE TS LD T + +VQ
Sbjct: 514 HQFDTLVGE---RGAQLSGGQKQRIAIARALVRNPKILLLDEATSALD-TESEAVVQAAL 569
Query: 177 DIAEAGKTVVTTIHQPSS----RLFHKFDKLILLGKGS 210
D A G+T + H+ S+ + FD +++ +G+
Sbjct: 570 DKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGN 607
Score = 82.0 bits (201), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 116/230 (50%), Gaps = 21/230 (9%)
Query: 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL---- 64
+L G++ V G+ LAL+G SG GK+T++ LL R +P G + D K L
Sbjct: 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLE-RFYDPMAGS--VFLDGKEIKQLNVQW 1104
Query: 65 -KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPN--TLTKQQKEKRAIDVINELGLERCQ 121
++++G V+Q+ +LF ++ E + Y R+ + + + KE I+ L
Sbjct: 1105 LRAQLGIVSQEPILF-DCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSL--PDKY 1161
Query: 122 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA 181
+T +G + +SGG+++R+ I ++ P +L LDE TS LD T + ++VQ D A
Sbjct: 1162 NTRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALD-TESEKVVQEALDKARE 1219
Query: 182 GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA----YFSSI 227
G+T + H+ S+ D ++++ G + G + +A YFS +
Sbjct: 1220 GRTCIVIAHRLST--IQNADLIVVIQNGKVKEHGTHQQLLAQKGIYFSMV 1267
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 89.4 bits (220), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 70/218 (32%), Positives = 114/218 (52%), Gaps = 19/218 (8%)
Query: 3 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS- 61
S +E IL G+ V G+ +AL+G SG GK+T + L+ RL +P + G ++ +
Sbjct: 399 SRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQ-RLYDP-LDGMVSIDGQDIRT 456
Query: 62 ---KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE 118
+ L+ IG V+Q+ VLF T+ E + Y + + K KE A D I + L
Sbjct: 457 INVRYLREIIGVVSQEPVLFA-TTIAENIRYGREDVTMDEIEKAVKEANAYDFI--MKLP 513
Query: 119 RCQDTMIGGSFVRG--VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQ 176
DT++G RG +SGG+++R+ I ++ NP +L LDE TS LD T + +VQ
Sbjct: 514 HQFDTLVGE---RGAQLSGGQKQRIAIARALVRNPKILLLDEATSALD-TESEAVVQAAL 569
Query: 177 DIAEAGKTVVTTIHQPSS----RLFHKFDKLILLGKGS 210
D A G+T + H+ S+ + FD +++ +G+
Sbjct: 570 DKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGN 607
Score = 82.0 bits (201), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 116/230 (50%), Gaps = 21/230 (9%)
Query: 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL---- 64
+L G++ V G+ LAL+G SG GK+T++ LL R +P G + D K L
Sbjct: 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLE-RFYDPMAGS--VFLDGKEIKQLNVQW 1104
Query: 65 -KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPN--TLTKQQKEKRAIDVINELGLERCQ 121
++++G V+Q+ +LF ++ E + Y R+ + + + KE I+ L
Sbjct: 1105 LRAQLGIVSQEPILF-DCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSL--PDKY 1161
Query: 122 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA 181
+T +G + +SGG+++R+ I ++ P +L LDE TS LD T + ++VQ D A
Sbjct: 1162 NTRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALD-TESEKVVQEALDKARE 1219
Query: 182 GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA----YFSSI 227
G+T + H+ S+ D ++++ G + G + +A YFS +
Sbjct: 1220 GRTCIVIAHRLST--IQNADLIVVIQNGKVKEHGTHQQLLAQKGIYFSMV 1267
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 89.4 bits (220), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 71/224 (31%), Positives = 111/224 (49%), Gaps = 16/224 (7%)
Query: 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS--- 61
+ + IL I+ P ++A GPSG GK+T+ +LL R +PT G IT + P
Sbjct: 13 DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLE-RFYQPTAG-EITIDGQPIDNIS 70
Query: 62 -KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC 120
++ +S+IGFV+QD + T++E LTY L T + + +E
Sbjct: 71 LENWRSQIGFVSQDSAIMAG-TIRENLTYG----LEGDYTDEDLWQVLDLAFARSFVENM 125
Query: 121 QDTMIGGSFVRGV--SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI 178
D + RGV SGG+R+R+ I + NP +L LDE T+ LDS + +VQ D
Sbjct: 126 PDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESE-SMVQKALDS 184
Query: 179 AEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222
G+T + H+ S+ + DK+ + KG + GK +E +A
Sbjct: 185 LMKGRTTLVIAHRLSTIV--DADKIYFIEKGQITGSGKHNELVA 226
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 89.0 bits (219), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 110/215 (51%), Gaps = 16/215 (7%)
Query: 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSK-- 67
LN I + GE +AL+GPSGSGK+TLL ++G + +PT G Y D L K
Sbjct: 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAG-IYKPTSGK--IYFDEKDVTELPPKDR 75
Query: 68 -IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIG 126
+G V Q+ L+PH+TV + + + LR +++ +K+ +V L +++ +
Sbjct: 76 NVGLVFQNWALYPHMTVYKNIAFPLELR---KAPREEIDKKVREVAKMLHIDKLLN---- 128
Query: 127 GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI-AEAGKTV 185
+ +SGG+++RV I ++ P +L LDEP S LD+ L + L+ + E G T
Sbjct: 129 -RYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITT 187
Query: 186 VTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 220
V H + L D++ ++ +G +L G E
Sbjct: 188 VYVTHDQAEALAMA-DRIAVIREGEILQVGTPDEV 221
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 89.0 bits (219), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 104/194 (53%), Gaps = 23/194 (11%)
Query: 8 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN-------DHPY 60
++L GI + GEV+ ++GPSGSGK+T L L+ L+E G I + D
Sbjct: 38 EVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLN--LLEDFDEGEIIIDGINLKAKDTNL 95
Query: 61 SKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEK---RAIDVINELGL 117
+K ++ ++G V Q LFPH+TV +T A P + K +EK +A+++++++GL
Sbjct: 96 NK-VREEVGMVFQRFNLFPHMTVLNNITLA-----PMKVRKWPREKAEAKAMELLDKVGL 149
Query: 118 ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD 177
+ ++ +SGG+ +RV I + + P ++ DEPTS LD ++ +++
Sbjct: 150 KDKAH-----AYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQ 204
Query: 178 IAEAGKTVVTTIHQ 191
+A G T+V H+
Sbjct: 205 LANEGMTMVVVTHE 218
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 89.0 bits (219), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 73/221 (33%), Positives = 119/221 (53%), Gaps = 16/221 (7%)
Query: 8 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS---- 63
+L G+T ++ PG+V AL+GP+GSGK+T+ LL L +PT GG + + P +
Sbjct: 33 QVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQ-NLYQPT-GGKVLLDGEPLVQYDHHY 90
Query: 64 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPN--TLTKQQKEKRAIDVINELGLERCQ 121
L +++ V Q+ +LF + +E + Y L R P +T E A D I+ G +
Sbjct: 91 LHTQVAAVGQEPLLFGR-SFRENIAYG-LTRTPTMEEITAVAMESGAHDFIS--GFPQGY 146
Query: 122 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE- 180
DT +G + + +SGG+R+ V + +I P LL LD+ TS LD+ LR+ ++L + E
Sbjct: 147 DTEVGETGNQ-LSGGQRQAVALARALIRKPRLLILDQATSALDAGNQLRVQRLLYESPEW 205
Query: 181 AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221
A +TV+ HQ S L + ++ L +GS+ G + M
Sbjct: 206 ASRTVLLITHQLS--LAERAHHILFLKEGSVCEQGTHLQLM 244
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 89.0 bits (219), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 73/249 (29%), Positives = 127/249 (51%), Gaps = 26/249 (10%)
Query: 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSL 64
+L+G+ SV PG ++A++G +GSGK+TL+NL+ RL++P G + ++ K L
Sbjct: 358 VLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIP-RLIDPE-RGRVEVDELDVRTVKLKDL 415
Query: 65 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTM 124
+ I V Q+ VLF T+KE L + + + + K + D I + L D+
Sbjct: 416 RGHISAVPQETVLFSG-TIKENLKWGREDATDDEIVEAAKIAQIHDFI--ISLPEGYDSR 472
Query: 125 I--GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG 182
+ GG R SGG+++R+ I ++ P +L LD+ TS +D T RI+ L+ +
Sbjct: 473 VERGG---RNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGC 529
Query: 183 KTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEFLL 242
T + T P++ L DK+++L +G + FG E + + C P + ++F
Sbjct: 530 TTFIITQKIPTALL---ADKILVLHEGKVAGFGTHKELLEH-----CKPYREIYESQF-- 579
Query: 243 DLANGNLHD 251
NG ++D
Sbjct: 580 --GNGVMND 586
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 88.6 bits (218), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 99/210 (47%), Gaps = 11/210 (5%)
Query: 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIG 69
L+ ++ V GE ++GP+G+GKT L L++G + + + D K I
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIA 75
Query: 70 FVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSF 129
FV Q+ LFPH+ VK+ L + ++ K + KR +D +L +E D
Sbjct: 76 FVYQNYSLFPHMNVKKNLEFGMRMK------KIKDPKRVLDTARDLKIEHLLDRN----- 124
Query: 130 VRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTI 189
+SGGE++RV + ++ NP +L LDEP S LD T +ML + + K V I
Sbjct: 125 PLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHI 184
Query: 190 HQPSSRLFHKFDKLILLGKGSLLYFGKASE 219
+ D++ ++ G L+ GK E
Sbjct: 185 THDQTEARIMADRIAVVMDGKLIQVGKPEE 214
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 117/221 (52%), Gaps = 25/221 (11%)
Query: 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK---- 65
L+ + ++ GE ++GPSG+GKTT + +++G + T G + ++D + + K
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPST--GELYFDDRLVASNGKLIVP 78
Query: 66 ---SKIGFVTQDDVLFPHLTVKETLTYAALLRLPN-TLTKQQKEKRAIDVINELGLERCQ 121
KIG V Q L+P+LT E + + L N ++K++ KR +V L +
Sbjct: 79 PEDRKIGMVFQTWALYPNLTAFENIAFP----LTNMKMSKEEIRKRVEEVAKILDIHHVL 134
Query: 122 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS---TTALRIVQMLQDI 178
+ F R +SGG+++RV + ++ +PSLL LDEP S LD+ +A +V+ +Q
Sbjct: 135 N-----HFPRELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQ-- 187
Query: 179 AEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 219
+ G T++ H P+ +F D++ +L KG L+ GK +
Sbjct: 188 SRLGVTLLVVSHDPAD-IFAIADRVGVLVKGKLVQVGKPED 227
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 117/230 (50%), Gaps = 37/230 (16%)
Query: 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS----L 64
IL+ I S+ GEV+ ++G SGSGK+TL L+ R P G + + H + + L
Sbjct: 18 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQ-RFYIPE-NGQVLIDGHDLALADPNWL 75
Query: 65 KSKIGFVTQDDVLF------------PHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVI 112
+ ++G V QD+VL P ++V E + YAA L A D I
Sbjct: 76 RRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKL------------AGAHDFI 122
Query: 113 NELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIV 172
+EL +T++G G+SGG+R+R+ I ++ NP +L DE TS LD + I+
Sbjct: 123 SEL--REGYNTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 179
Query: 173 QMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222
+ + I + G+TV+ H+ S+ D++I++ KG ++ GK E ++
Sbjct: 180 RNMHKICK-GRTVIIIAHRLST--VKNADRIIVMEKGKIVEQGKHKELLS 226
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 117/230 (50%), Gaps = 37/230 (16%)
Query: 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS----L 64
IL+ I S+ GEV+ ++G SGSGK+TL L+ R P G + + H + + L
Sbjct: 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQ-RFYIPE-NGQVLIDGHDLALADPNWL 81
Query: 65 KSKIGFVTQDDVLF------------PHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVI 112
+ ++G V QD+VL P ++V E + YAA L A D I
Sbjct: 82 RRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKL------------AGAHDFI 128
Query: 113 NELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIV 172
+EL +T++G G+SGG+R+R+ I ++ NP +L DE TS LD + I+
Sbjct: 129 SEL--REGYNTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 185
Query: 173 QMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222
+ + I + G+TV+ H+ S+ D++I++ KG ++ GK E ++
Sbjct: 186 RNMHKICK-GRTVIIIAHRLST--VKNADRIIVMEKGKIVEQGKHKELLS 232
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 120/259 (46%), Gaps = 19/259 (7%)
Query: 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP--YSKSLKSK 67
+N + ++ GE L L+GPSG GKTT L +++G L EPT G I + D Y
Sbjct: 28 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAG-LEEPT-EGRIYFGDRDVTYLPPKDRN 85
Query: 68 IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGG 127
I V Q ++PH+TV E + + ++ K + +KR E Q +
Sbjct: 86 ISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRV-----RWAAELLQIEELLN 137
Query: 128 SFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVT 187
+ +SGG+R+RV + I++ P +L +DEP S LD+ + + ++ + + K
Sbjct: 138 RYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTI 197
Query: 188 TIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEFLLDLANG 247
+ D++ ++ +G LL G +E +S+ + I P +L+++ G
Sbjct: 198 YVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVFVATFIGA-PEMNILEVSVG 256
Query: 248 NLH------DVSVPSELQD 260
+ + + +P +L D
Sbjct: 257 DGYLEGRGFRIELPQDLMD 275
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 117/230 (50%), Gaps = 37/230 (16%)
Query: 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS----L 64
IL+ I S+ GEV+ ++G SGSGK+TL L+ R P G + + H + + L
Sbjct: 20 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQ-RFYIPE-NGQVLIDGHDLALADPNWL 77
Query: 65 KSKIGFVTQDDVLF------------PHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVI 112
+ ++G V QD+VL P ++V E + YAA L A D I
Sbjct: 78 RRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKL------------AGAHDFI 124
Query: 113 NELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIV 172
+EL +T++G G+SGG+R+R+ I ++ NP +L DE TS LD + I+
Sbjct: 125 SEL--REGYNTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 181
Query: 173 QMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222
+ + I + G+TV+ H+ S+ D++I++ KG ++ GK E ++
Sbjct: 182 RNMHKICK-GRTVIIIAHRLST--VKNADRIIVMEKGKIVEQGKHKELLS 228
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 120/259 (46%), Gaps = 19/259 (7%)
Query: 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP--YSKSLKSK 67
+N + ++ GE L L+GPSG GKTT L +++G L EPT G I + D Y
Sbjct: 27 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAG-LEEPT-EGRIYFGDRDVTYLPPKDRN 84
Query: 68 IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGG 127
I V Q ++PH+TV E + + ++ K + +KR E Q +
Sbjct: 85 ISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRV-----RWAAELLQIEELLN 136
Query: 128 SFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVT 187
+ +SGG+R+RV + I++ P +L +DEP S LD+ + + ++ + + K
Sbjct: 137 RYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTI 196
Query: 188 TIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEFLLDLANG 247
+ D++ ++ +G LL G +E +S+ + I P +L+++ G
Sbjct: 197 YVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVFVATFIGA-PEMNILEVSVG 255
Query: 248 NLH------DVSVPSELQD 260
+ + + +P +L D
Sbjct: 256 DGYLEGRGFRIELPQDLMD 274
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 85.5 bits (210), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 70/220 (31%), Positives = 109/220 (49%), Gaps = 26/220 (11%)
Query: 13 ITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSI-----TYNDHPYSKSLKSK 67
I ++ GE + +GPSG GK+TLL +++G +E G + ND P ++
Sbjct: 22 INLDIHEGEFVVFVGPSGCGKSTLLRMIAG--LETITSGDLFIGEKRMNDTPPAER---G 76
Query: 68 IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGG 127
+G V Q L+PHL+V E +++ L+L K+ +R V L L D
Sbjct: 77 VGMVFQSYALYPHLSVAENMSFG--LKLAGA-KKEVINQRVNQVAEVLQLAHLLDRK--- 130
Query: 128 SFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA----EAGK 183
+ +SGG+R+RV IG ++ PS+ LDEP S LD+ ALR VQM +I+ G+
Sbjct: 131 --PKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDA--ALR-VQMRIEISRLHKRLGR 185
Query: 184 TVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAY 223
T++ H + DK+++L G + GK E Y
Sbjct: 186 TMIYVTHDQVEAMTLA-DKIVVLDAGRVAQVGKPLELYHY 224
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 85.5 bits (210), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 70/220 (31%), Positives = 109/220 (49%), Gaps = 26/220 (11%)
Query: 13 ITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSI-----TYNDHPYSKSLKSK 67
I ++ GE + +GPSG GK+TLL +++G +E G + ND P ++
Sbjct: 22 INLDIHEGEFVVFVGPSGCGKSTLLRMIAG--LETITSGDLFIGEKRMNDTPPAER---G 76
Query: 68 IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGG 127
+G V Q L+PHL+V E +++ L+L K+ +R V L L D
Sbjct: 77 VGMVFQSYALYPHLSVAENMSFG--LKLAGA-KKEVINQRVNQVAEVLQLAHLLDRK--- 130
Query: 128 SFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA----EAGK 183
+ +SGG+R+RV IG ++ PS+ LDEP S LD+ ALR VQM +I+ G+
Sbjct: 131 --PKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDA--ALR-VQMRIEISRLHKRLGR 185
Query: 184 TVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAY 223
T++ H + DK+++L G + GK E Y
Sbjct: 186 TMIYVTHDQVEAMTLA-DKIVVLDAGRVAQVGKPLELYHY 224
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 85.5 bits (210), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 110/235 (46%), Gaps = 20/235 (8%)
Query: 16 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS--------K 67
V GE + L+GPSG GKTT L +++G L EP+ G I D + K
Sbjct: 25 EVKDGEFMILLGPSGCGKTTTLRMIAG-LEEPS-RGQIYIGDKLVADPEKGIFVPPKDRD 82
Query: 68 IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGG 127
I V Q L+PH+TV + + + LR + +Q+ ++R +V LGL T +
Sbjct: 83 IAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGL-----TELLN 134
Query: 128 SFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA-EAGKTVV 186
R +SGG+R+RV +G I+ P + +DEP S LD+ +R+ L+ + + G T +
Sbjct: 135 RKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTI 194
Query: 187 TTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEFL 241
H + D++ ++ +G L G E ++ + I P FL
Sbjct: 195 YVTHDQVEAMTMG-DRIAVMNRGVLQQVGSPDEVYDKPANTFVAGFIGSPPMNFL 248
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 85.1 bits (209), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 117/230 (50%), Gaps = 37/230 (16%)
Query: 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS----L 64
IL+ I S+ GEV+ ++G +GSGK+TL L+ R P G + + H + + L
Sbjct: 20 ILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQ-RFYIPE-NGQVLIDGHDLALADPNWL 77
Query: 65 KSKIGFVTQDDVLF------------PHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVI 112
+ ++G V QD+VL P ++V E + YAA L A D I
Sbjct: 78 RRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKL------------AGAHDFI 124
Query: 113 NELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIV 172
+EL +T++G G+SGG+R+R+ I ++ NP +L DE TS LD + I+
Sbjct: 125 SEL--REGYNTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 181
Query: 173 QMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222
+ + I + G+TV+ H+ S+ D++I++ KG ++ GK E ++
Sbjct: 182 RNMHKICK-GRTVIIIAHRLST--VKNADRIIVMEKGKIVEQGKHKELLS 228
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 117/230 (50%), Gaps = 37/230 (16%)
Query: 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS----L 64
IL+ I S+ GEV+ ++G SGSGK+TL L+ R P G + + H + + L
Sbjct: 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQ-RFYIPE-NGQVLIDGHDLALADPNWL 81
Query: 65 KSKIGFVTQDDVLF------------PHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVI 112
+ ++G V QD+VL P ++V E + YAA L A D I
Sbjct: 82 RRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKL------------AGAHDFI 128
Query: 113 NELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIV 172
+EL +T++G G+SGG+R+R+ I ++ NP +L D+ TS LD + I+
Sbjct: 129 SEL--REGYNTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIM 185
Query: 173 QMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222
+ + I + G+TV+ H+ S+ D++I++ KG ++ GK E ++
Sbjct: 186 RNMHKICK-GRTVIIIAHRLST--VKNADRIIVMEKGKIVEQGKHKELLS 232
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 72/221 (32%), Positives = 117/221 (52%), Gaps = 16/221 (7%)
Query: 8 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS---- 63
+L G+T ++ PG+V AL+GP+GSGK+T+ LL L +PT GG + + P +
Sbjct: 33 QVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQ-NLYQPT-GGKVLLDGEPLVQYDHHY 90
Query: 64 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPN--TLTKQQKEKRAIDVINELGLERCQ 121
L +++ V Q+ +LF + +E + Y L R P +T E A D I+ G +
Sbjct: 91 LHTQVAAVGQEPLLFGR-SFRENIAYG-LTRTPTMEEITAVAMESGAHDFIS--GFPQGY 146
Query: 122 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE- 180
DT +G + + +SGG+R+ V + +I P LL LD TS LD+ LR+ ++L + E
Sbjct: 147 DTEVGETGNQ-LSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEW 205
Query: 181 AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221
A +TV+ Q S L + ++ L +GS+ G + M
Sbjct: 206 ASRTVLLITQQLS--LAERAHHILFLKEGSVCEQGTHLQLM 244
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 116/221 (52%), Gaps = 25/221 (11%)
Query: 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK---- 65
L+ + ++ GE ++GPSG+GKTT + +++G + T G + ++D + + K
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPST--GELYFDDRLVASNGKLIVP 78
Query: 66 ---SKIGFVTQDDVLFPHLTVKETLTYAALLRLPN-TLTKQQKEKRAIDVINELGLERCQ 121
KIG V Q L+P+LT E + + L N ++K++ KR +V L +
Sbjct: 79 PEDRKIGMVFQTWALYPNLTAFENIAFP----LTNMKMSKEEIRKRVEEVAKILDIHHVL 134
Query: 122 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS---TTALRIVQMLQDI 178
+ F R +SG +++RV + ++ +PSLL LDEP S LD+ +A +V+ +Q
Sbjct: 135 N-----HFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQ-- 187
Query: 179 AEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 219
+ G T++ H P+ +F D++ +L KG L+ GK +
Sbjct: 188 SRLGVTLLVVSHDPAD-IFAIADRVGVLVKGKLVQVGKPED 227
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 108/215 (50%), Gaps = 18/215 (8%)
Query: 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVG----GSITYNDHPYSKSLK 65
+ G++ + GE++ L+GPSGSGKTT+L L++G L PT G G D P K
Sbjct: 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAG-LERPTKGDVWIGGKRVTDLP---PQK 86
Query: 66 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMI 125
+G V Q+ LF H+TV + +++ LR + K + + R +++ + LE +
Sbjct: 87 RNVGLVFQNYALFQHMTVYDNVSFG--LR-EKRVPKDEMDARVRELLRFMRLESYAN--- 140
Query: 126 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA-EAGKT 184
F +SGG+++RV + + P +L DEP + +D+ + ++ + E G T
Sbjct: 141 --RFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVT 198
Query: 185 VVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 219
V H L D++++L +G++ FG E
Sbjct: 199 SVFVTHDQEEAL-EVADRVLVLHEGNVEQFGTPEE 232
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/220 (31%), Positives = 109/220 (49%), Gaps = 26/220 (11%)
Query: 13 ITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSI-----TYNDHPYSKSLKSK 67
I ++ GE + +GPSG GK+TLL +++G +E G + ND P ++
Sbjct: 22 INLDIHEGEFVVFVGPSGCGKSTLLRMIAG--LETITSGDLFIGEKRMNDTPPAER---G 76
Query: 68 IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGG 127
+G V Q L+PHL+V E +++ L+L K+ +R V L L D
Sbjct: 77 VGMVFQSYALYPHLSVAENMSFG--LKLAGA-KKEVINQRVNQVAEVLQLAHLLDRK--- 130
Query: 128 SFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA----EAGK 183
+ +SGG+R+RV IG ++ PS+ LD+P S LD+ ALR VQM +I+ G+
Sbjct: 131 --PKALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDA--ALR-VQMRIEISRLHKRLGR 185
Query: 184 TVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAY 223
T++ H + DK+++L G + GK E Y
Sbjct: 186 TMIYVTHDQVEAMTLA-DKIVVLDAGRVAQVGKPLELYHY 224
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 71/235 (30%), Positives = 104/235 (44%), Gaps = 20/235 (8%)
Query: 16 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS--------K 67
+ GE L L+GPSG GKTT L ++G L EPT G I D+ + K
Sbjct: 28 EIKDGEFLVLLGPSGCGKTTTLRXIAG-LEEPT-RGQIYIEDNLVADPEKGVFVPPKERD 85
Query: 68 IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGG 127
+ V Q L+PH TV + + + LR + KQ+ +KR +V LGL T +
Sbjct: 86 VAXVFQSYALYPHXTVYDNIAFPLKLR---KVPKQEIDKRVREVAEXLGL-----TELLN 137
Query: 128 SFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA-EAGKTVV 186
R +SGG+R+RV +G II P + DEP S LD+ ++ L+ + + G T +
Sbjct: 138 RKPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQRQLGVTTI 197
Query: 187 TTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEFL 241
H D++ + KG L G E + + I P FL
Sbjct: 198 YVTHD-QVEAXTXGDRIAVXNKGELQQVGTPDEVYYKPVNTFVAGFIGSPPXNFL 251
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 82.4 bits (202), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 116/230 (50%), Gaps = 37/230 (16%)
Query: 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS----L 64
IL+ I S+ GEV+ ++G SGSGK+TL L+ R P G + + H + + L
Sbjct: 18 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQ-RFYIPE-NGQVLIDGHDLALADPNWL 75
Query: 65 KSKIGFVTQDDVLF------------PHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVI 112
+ ++G V QD+VL P ++V E + YAA L A D I
Sbjct: 76 RRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKL------------AGAHDFI 122
Query: 113 NELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIV 172
+EL +T++G G+SGG+R+R+ I ++ NP +L DE TS LD + I+
Sbjct: 123 SEL--REGYNTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 179
Query: 173 QMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222
+ + I + G+TV+ + S+ D++I++ KG ++ GK E ++
Sbjct: 180 RNMHKICK-GRTVIIIAARLST--VKNADRIIVMEKGKIVEQGKHKELLS 226
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 82.4 bits (202), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 116/230 (50%), Gaps = 37/230 (16%)
Query: 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS----L 64
IL+ I S+ GEV+ ++G SGSGK+TL L+ R P G + + H + + L
Sbjct: 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQ-RFYIPE-NGQVLIDGHDLALADPNWL 81
Query: 65 KSKIGFVTQDDVLF------------PHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVI 112
+ ++G V QD+VL P ++V E + YAA L A D I
Sbjct: 82 RRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKL------------AGAHDFI 128
Query: 113 NELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIV 172
+EL +T++G G+SGG+R+R+ I ++ NP +L DE TS LD + I+
Sbjct: 129 SEL--REGYNTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 185
Query: 173 QMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222
+ + I + G+TV+ + S+ D++I++ KG ++ GK E ++
Sbjct: 186 RNMHKICK-GRTVIIIAARLST--VKNADRIIVMEKGKIVEQGKHKELLS 232
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 82.4 bits (202), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 114/223 (51%), Gaps = 16/223 (7%)
Query: 3 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVG-----GSITYND 57
S + +LN I+ S++PGE+L ++G SG GKTTLL L+G +P G G ++
Sbjct: 13 SFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAG-FEQPDSGEISLSGKTIFSK 71
Query: 58 HPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL 117
+ + ++G++ Q+ VLFPHLTV + Y L N + +E++ I+ + L
Sbjct: 72 NTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYG----LGNGKGRTAQERQRIEAM----L 123
Query: 118 ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ-MLQ 176
E + + G + +SGG+++R + + +P L+ LDEP S LD +I + M+
Sbjct: 124 ELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIA 183
Query: 177 DIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 219
+ GK+ V H L + D++ ++ +G +L E
Sbjct: 184 ALRANGKSAVFVSHDREEALQYA-DRIAVMKQGRILQTASPHE 225
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/225 (28%), Positives = 107/225 (47%), Gaps = 18/225 (8%)
Query: 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 65
EK L ++ +N GE L + G +GSGK+TLL +++G L+EPT G + + ++
Sbjct: 19 EKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAG-LIEPTSGDVLYDGERKKGYEIR 77
Query: 66 SKIGFVTQ--DDVLFPHLTVKETLTYAALL---RLPNTLTKQQKEKRAIDVINELGLERC 120
IG Q +D F E R P L K+ E +D +
Sbjct: 78 RNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLD------FDSF 131
Query: 121 QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE 180
+D + F +SGGE++RV I + I+ P +L LDEP GLD ++++++
Sbjct: 132 KDRV---PFF--LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKT 186
Query: 181 AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFS 225
GKTV+ H + + H D++++L KG ++ G E + +
Sbjct: 187 LGKTVILISHDIETVINH-VDRVVVLEKGKKVFDGTRMEFLEKYD 230
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/225 (28%), Positives = 107/225 (47%), Gaps = 18/225 (8%)
Query: 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 65
EK L ++ +N GE L + G +GSGK+TLL +++G L+EPT G + + ++
Sbjct: 21 EKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAG-LIEPTSGDVLYDGERKKGYEIR 79
Query: 66 SKIGFVTQ--DDVLFPHLTVKETLTYAALL---RLPNTLTKQQKEKRAIDVINELGLERC 120
IG Q +D F E R P L K+ E +D +
Sbjct: 80 RNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLD------FDSF 133
Query: 121 QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE 180
+D + F +SGGE++RV I + I+ P +L LDEP GLD ++++++
Sbjct: 134 KDRV---PFF--LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKT 188
Query: 181 AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFS 225
GKTV+ H + + H D++++L KG ++ G E + +
Sbjct: 189 LGKTVILISHDIETVINH-VDRVVVLEKGKKVFDGTRMEFLEKYD 232
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/229 (30%), Positives = 122/229 (53%), Gaps = 26/229 (11%)
Query: 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 62
+EK L+ ++ S+ G+ +AL+G SGSGK+T+ NL + R + GSI + H
Sbjct: 354 KEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFT-RFYDVD-SGSICLDGHDVRDYK 411
Query: 63 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEK-----RAIDVINEL 115
+L+ V+Q+ LF T+ + YAA T++Q E+ A++ I +
Sbjct: 412 LTNLRRHFALVSQNVHLFND-TIANNIAYAA----EGEYTREQIEQAARQAHAMEFIENM 466
Query: 116 --GLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ 173
GL DT+IG + +SGG+R+RV I ++ + +L LDE TS LD T + R +Q
Sbjct: 467 PQGL----DTVIGENGT-SLSGGQRQRVAIARALLRDAPVLILDEATSALD-TESERAIQ 520
Query: 174 MLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222
D + KTV+ H+ S+ + D+++++ +G ++ G+ ++ +A
Sbjct: 521 AALDELQKNKTVLVIAHRLST--IEQADEILVVDEGEIIERGRHADLLA 567
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 71/222 (31%), Positives = 111/222 (50%), Gaps = 17/222 (7%)
Query: 4 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK- 62
++K +L IT + PG+ +AL+GP+GSGKTT++NLL R + G I + K
Sbjct: 365 DKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLM-RFYDVD-RGQILVDGIDIRKI 422
Query: 63 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL--GL 117
SL+S IG V QD +LF TVKE L Y P ++ KE + + L
Sbjct: 423 KRSSLRSSIGIVLQDTILFST-TVKENLKYGN----PGATDEEIKEAAKLTHSDHFIKHL 477
Query: 118 ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD 177
+T++ + +S G+R+ + I + NP +L LDE TS +D+ T I +
Sbjct: 478 PEGYETVLTDNG-EDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWK 536
Query: 178 IAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 219
+ E GKT + H+ ++ D +I+L G ++ GK E
Sbjct: 537 LME-GKTSIIIAHRLNT--IKNADLIIVLRDGEIVEMGKHDE 575
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 114/217 (52%), Gaps = 13/217 (5%)
Query: 4 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK- 62
++ ++ L ++ +V PG+ LAL+GPSG+GK+T+L LL R + + G I + S+
Sbjct: 64 ADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLF-RFYDIS-SGCIRIDGQDISQV 121
Query: 63 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER 119
SL+S IG V QD VLF + T+ + + Y + + + + D I +
Sbjct: 122 TQASLRSHIGVVPQDTVLF-NDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAI--MAFPE 178
Query: 120 CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA 179
T +G ++ +SGGE++RV I I+ P ++ LDE TS LD++ I L +
Sbjct: 179 GYRTQVGERGLK-LSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVC 237
Query: 180 EAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 216
A +T + H+ S+ + D+++++ G ++ G+
Sbjct: 238 -ANRTTIVVAHRLSTVV--NADQILVIKDGCIVERGR 271
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 116/221 (52%), Gaps = 16/221 (7%)
Query: 8 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----S 63
+L G+T ++ PG+V AL+GP+GSGK+T+ LL L +PT GG + + P +
Sbjct: 33 QVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQ-NLYQPT-GGKVLLDGEPLVQYDHHY 90
Query: 64 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP--NTLTKQQKEKRAIDVINELGLERCQ 121
L +++ V Q+ +LF + +E + Y L R P +T E A D I+ G +
Sbjct: 91 LHTQVAAVGQEPLLFGR-SFRENIAY-GLTRTPTMEEITAVAMESGAHDFIS--GFPQGY 146
Query: 122 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE- 180
DT +G + + ++ G+R+ V + +I P LL LD TS LD+ LR+ ++L + E
Sbjct: 147 DTEVGETGNQ-LAVGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEW 205
Query: 181 AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221
A +TV+ Q S L + ++ L +GS+ G + M
Sbjct: 206 ASRTVLLITQQLS--LAERAHHILFLKEGSVCEQGTHLQLM 244
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 106/201 (52%), Gaps = 16/201 (7%)
Query: 20 GEVLALMGPSGSGKTTLLNLLSGRLMEP----TVGGSITYNDHPYSK-SLKSKIGFVTQD 74
G AL+G +GSGK+T+ LL R + +GG N + Y++ S++S IG V QD
Sbjct: 46 GTTCALVGHTGSGKSTIAKLLY-RFYDAEGDIKIGGK---NVNKYNRNSIRSIIGIVPQD 101
Query: 75 DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 134
+LF T+K + Y L + K K + D I L + DT++G ++ +S
Sbjct: 102 TILFNE-TIKYNILYGKLDATDEEVIKATKSAQLYDFIE--ALPKKWDTIVGNKGMK-LS 157
Query: 135 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSS 194
GGER+R+ I ++ +P ++ DE TS LDS T + ++D+ + +T++ H+ S+
Sbjct: 158 GGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAHRLST 216
Query: 195 RLFHKFDKLILLGKGSLLYFG 215
+ +ILL KG ++ G
Sbjct: 217 --ISSAESIILLNKGKIVEKG 235
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 79.3 bits (194), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 115/222 (51%), Gaps = 21/222 (9%)
Query: 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP--YSKS---- 63
L GI ++ GEV A++G +G GK+TL +G +++P+ G I +++ P YS+
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNG-ILKPS-SGRILFDNKPIDYSRKGIMK 81
Query: 64 LKSKIGFVTQD-DVLFPHLTVKETLTYAAL-LRLPNTLTKQQKEKRAIDVINELGLERCQ 121
L+ IG V QD D +V + +++ A+ ++LP + + KR + + G+E +
Sbjct: 82 LRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLP----EDEIRKRVDNALKRTGIEHLK 137
Query: 122 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI-AE 180
D +S G++KRV I +++ P +L LDEPT+GLD I+++L ++ E
Sbjct: 138 DKP-----THCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKE 192
Query: 181 AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222
G T++ H + D + ++ +G ++ G E A
Sbjct: 193 LGITIIIATHDIDIVPLY-CDNVFVMKEGRVILQGNPKEVFA 233
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/237 (29%), Positives = 120/237 (50%), Gaps = 17/237 (7%)
Query: 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSL 64
+L G+T ++ PGEV AL+GP+GSGK+T+ LL L +PT GG + + P + L
Sbjct: 32 VLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQ-NLYQPT-GGQLLLDGKPLPQYEHRYL 89
Query: 65 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLP--NTLTKQQKEKRAIDVINELGLERCQD 122
++ V Q+ +F +++E + Y L + P +T + A I+ GL + D
Sbjct: 90 HRQVAAVGQEPQVFGR-SLQENIAY-GLTQKPTMEEITAAAVKSGAHSFIS--GLPQGYD 145
Query: 123 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG 182
T + + + +SGG+R+ V + +I P +L LD+ TS LD+ + L++ Q+L + E
Sbjct: 146 TEVDEAGSQ-LSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERY 204
Query: 183 KTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAE 239
V I Q S L + D ++ L G++ G + M GC + PA+
Sbjct: 205 SRSVLLITQHLS-LVEQADHILFLEGGAIREGGTHQQLM---EKKGCYWAMVQAPAD 257
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 113/216 (52%), Gaps = 12/216 (5%)
Query: 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--S 63
+K+IL GI+ + GE+ L+GP+G+GKTT L ++S L++P+ G + + +
Sbjct: 27 KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIIS-TLIKPSSGIVTVFGKNVVEEPHE 85
Query: 64 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDT 123
++ I ++ ++ + ++ E L + A ++ ++ +RA ++ LG E+ +D
Sbjct: 86 VRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAG-LG-EKIKDR 143
Query: 124 MIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGK 183
V S G +++ I +++NP L LDEPTSGLD A + ++L+ ++ G
Sbjct: 144 ------VSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGL 197
Query: 184 TVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 219
T++ + H F D++ L+ G+++ G E
Sbjct: 198 TILVSSHNMLEVEFL-CDRIALIHNGTIVETGTVEE 232
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 118/222 (53%), Gaps = 22/222 (9%)
Query: 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLK 65
L I + G+ +AL+G SGSGK+T+ +L++ R + G I + H + SL+
Sbjct: 359 LRNINLKIPAGKTVALVGRSGSGKSTIASLIT-RFYDID-EGHILMDGHDLREYTLASLR 416
Query: 66 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRA-----IDVINELGLERC 120
+++ V+Q+ LF TV + YA +++Q E+ A +D IN++ +
Sbjct: 417 NQVALVSQNVHLFND-TVANNIAYAR----TEEYSREQIEEAARMAYAMDFINKM--DNG 469
Query: 121 QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE 180
DT+IG + V +SGG+R+R+ I ++ + +L LDE TS LD T + R +Q D +
Sbjct: 470 LDTIIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALD-TESERAIQAALDELQ 527
Query: 181 AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222
+T + H+ S+ + D+++++ G ++ G SE +A
Sbjct: 528 KNRTSLVIAHRLST--IEQADEIVVVEDGIIVERGTHSELLA 567
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 106/201 (52%), Gaps = 25/201 (12%)
Query: 8 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVG----------------G 51
++L G++ G+V++++G SGSGK+T L ++ L +P+ G G
Sbjct: 20 EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINF-LEKPSEGAIIVNGQNINLVRDKDG 78
Query: 52 SITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDV 111
+ D + L++++ V Q L+ H+TV E + A + L L+K +RA+
Sbjct: 79 QLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKHDARERALKY 136
Query: 112 INELGL-ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALR 170
+ ++G+ ER Q G + +SGG+++RV I + + P +L DEPTS LD
Sbjct: 137 LAKVGIDERAQ-----GKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGE 191
Query: 171 IVQMLQDIAEAGKTVVTTIHQ 191
+++++Q +AE GKT+V H+
Sbjct: 192 VLRIMQQLAEEGKTMVVVTHE 212
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 131/266 (49%), Gaps = 36/266 (13%)
Query: 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSI--------TYNDHPYS 61
LN ++ V G++ ++G SG+GK+TL+ ++ L+E GS+ T ++ +
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVN--LLERPTEGSVLVDGQELTTLSESELT 78
Query: 62 KSLKSKIGFVTQDDVLFPHLTVKETLTYAAL-LRLPNTLTKQQKEKRAIDVINELGLERC 120
K+ + +IG + Q F L+ + AL L L NT K + ++R ++++ +GL
Sbjct: 79 KA-RRQIGMIFQH---FNLLSSRTVFGNVALPLELDNT-PKDEVKRRVTELLSLVGLGDK 133
Query: 121 QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE 180
D S+ +SGG+++RV I + NP +L DE TS LD T I+++L+DI
Sbjct: 134 HD-----SYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINR 188
Query: 181 A-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAE 239
G T++ H+ + D + ++ G L+ SE ++ P+ + +
Sbjct: 189 RLGLTILLITHE-MDVVKRICDCVAVISNGELIEQDTVSEVFSH-------PKTPL-AQK 239
Query: 240 FLLDLANGNLHDVSVPSELQDRVQTE 265
F+ LH + +P + Q+R+Q E
Sbjct: 240 FI----QSTLH-LDIPEDYQERLQAE 260
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 72.0 bits (175), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 63/223 (28%), Positives = 118/223 (52%), Gaps = 22/223 (9%)
Query: 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLK 65
L I + G+ +AL+G SGSGK+T+ +L++ R + G I + H + SL+
Sbjct: 359 LRNINLKIPAGKTVALVGRSGSGKSTIASLIT-RFYDID-EGEILMDGHDLREYTLASLR 416
Query: 66 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRA-----IDVINELGLERC 120
+++ V+Q+ LF TV + YA +++Q E+ A +D IN++ +
Sbjct: 417 NQVALVSQNVHLFND-TVANNIAYAR----TEQYSREQIEEAARMAYAMDFINKM--DNG 469
Query: 121 QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE 180
DT+IG + V +SGG+R+R+ I ++ + +L LDE TS LD T + R +Q D +
Sbjct: 470 LDTVIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALD-TESERAIQAALDELQ 527
Query: 181 AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAY 223
+T + H+ S+ K D+++++ G ++ G ++ + +
Sbjct: 528 KNRTSLVIAHRLST--IEKADEIVVVEDGVIVERGTHNDLLEH 568
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 131/266 (49%), Gaps = 36/266 (13%)
Query: 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSI--------TYNDHPYS 61
LN ++ V G++ ++G SG+GK+TL+ ++ L+E GS+ T ++ +
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVN--LLERPTEGSVLVDGQELTTLSESELT 101
Query: 62 KSLKSKIGFVTQDDVLFPHLTVKETLTYAAL-LRLPNTLTKQQKEKRAIDVINELGLERC 120
K+ + +IG + Q F L+ + AL L L NT K + ++R ++++ +GL
Sbjct: 102 KA-RRQIGMIFQH---FNLLSSRTVFGNVALPLELDNT-PKDEVKRRVTELLSLVGLGDK 156
Query: 121 QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE 180
D S+ +SGG+++RV I + NP +L D+ TS LD T I+++L+DI
Sbjct: 157 HD-----SYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINR 211
Query: 181 A-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAE 239
G T++ H+ + D + ++ G L+ SE ++ P+ + +
Sbjct: 212 RLGLTILLITHE-MDVVKRICDCVAVISNGELIEQDTVSEVFSH-------PKTPL-AQK 262
Query: 240 FLLDLANGNLHDVSVPSELQDRVQTE 265
F+ LH + +P + Q+R+Q E
Sbjct: 263 FI----QSTLH-LDIPEDYQERLQAE 283
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/261 (24%), Positives = 126/261 (48%), Gaps = 26/261 (9%)
Query: 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIG 69
LN ++ V G++ ++G SG+GK+TL+ ++ L+E GS+ + + +S++
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVN--LLERPTEGSVLVDGQELTTLSESELT 101
Query: 70 FVT-QDDVLFPHLTVKETLTYAALLRLP---NTLTKQQKEKRAIDVINELGLERCQDTMI 125
Q +F H + + T + LP + K + ++R ++++ +GL D
Sbjct: 102 KARRQIGXIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHD--- 158
Query: 126 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKT 184
S+ +SGG+++RV I + NP +L D+ TS LD T I+++L+DI G T
Sbjct: 159 --SYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLT 216
Query: 185 VVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEFLLDL 244
++ H+ + D + ++ G L+ SE ++ P+ + +F+
Sbjct: 217 ILLITHE-XDVVKRICDCVAVISNGELIEQDTVSEVFSH-------PKTPL-AQKFI--- 264
Query: 245 ANGNLHDVSVPSELQDRVQTE 265
LH + +P + Q+R+Q E
Sbjct: 265 -QSTLH-LDIPEDYQERLQAE 283
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 85/162 (52%), Gaps = 20/162 (12%)
Query: 25 LMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN--DHPYSKSLKSKIGFVTQDDVLFPHLT 82
L+GP+G+GK+ L L++G +++P G + N D + IGFV QD LFPHL+
Sbjct: 29 LLGPTGAGKSVFLELIAG-IVKPD-RGEVRLNGADITPLPPERRGIGFVPQDYALFPHLS 86
Query: 83 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 142
V + Y LR + + ++++R ++ +LG+ D +SGGER+RV
Sbjct: 87 VYRNIAYG--LR---NVERVERDRRVREMAEKLGIAHLLDRKPAR-----LSGGERQRVA 136
Query: 143 IGNEIIINPSLLFLDEPTSGLDSTTA------LRIVQMLQDI 178
+ ++I P LL LDEP S +D T LR VQ D+
Sbjct: 137 LARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDV 178
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 91/182 (50%), Gaps = 17/182 (9%)
Query: 2 TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH--- 58
S E+K IL G++ V+PGEV A+MGP+GSGK+TL L+GR GG++ +
Sbjct: 9 VSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLL 68
Query: 59 ---PYSKSLKSKIGFVTQDDVLFPHLT----VKETLTYAALLRLPNTLTKQQKEKRAIDV 111
P ++ + I Q V P ++ ++ L R TL + + D+
Sbjct: 69 ALSPEDRAGEG-IFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQ----DL 123
Query: 112 INE-LGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALR 170
+ E + L + + ++ S G SGGE+KR I ++ P L LDE SGLD AL+
Sbjct: 124 MEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLD-IDALK 182
Query: 171 IV 172
+V
Sbjct: 183 VV 184
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 109/224 (48%), Gaps = 22/224 (9%)
Query: 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVG-GSITYNDHPYSKSL 64
E L ++G V GE+L L+GP+G+GK+TLL ++G T G GSI + P
Sbjct: 12 ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM----TSGKGSIQFAGQPLEAWS 67
Query: 65 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTM 124
+K+ +L+ ++T +A + + LT Q +K +++N++ D
Sbjct: 68 ATKLALHR------AYLSQQQTPPFATPVW--HYLTLHQHDKTRTELLNDVAGALALDDK 119
Query: 125 IGGSFVRGVSGGERKRVCIGNEII-----INPS--LLFLDEPTSGLDSTTALRIVQMLQD 177
+G S +SGGE +RV + ++ NP+ LL LD+P + LD + ++L
Sbjct: 120 LGRS-TNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQQSALDKILSA 178
Query: 178 IAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221
+++ G +V + H + L H +L G G +L G+ E +
Sbjct: 179 LSQQGLAIVMSSHDLNHTLRHAHRAWLLKG-GKMLASGRREEVL 221
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 91/182 (50%), Gaps = 17/182 (9%)
Query: 2 TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH--- 58
S E+K IL G++ V+PGEV A+MGP+GSGK+TL L+GR GG++ +
Sbjct: 28 VSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLL 87
Query: 59 ---PYSKSLKSKIGFVTQDDVLFPHLT----VKETLTYAALLRLPNTLTKQQKEKRAIDV 111
P ++ + I Q V P ++ ++ L R TL + + D+
Sbjct: 88 ALSPEDRAGEG-IFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQ----DL 142
Query: 112 INE-LGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALR 170
+ E + L + + ++ S G SGGE+KR I ++ P L LDE SGLD AL+
Sbjct: 143 MEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLD-IDALK 201
Query: 171 IV 172
+V
Sbjct: 202 VV 203
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 108/224 (48%), Gaps = 22/224 (9%)
Query: 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVG-GSITYNDHPYSKSL 64
E L ++G V GE+L L+GP+G+GK+TLL ++G T G GSI + P
Sbjct: 12 ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM----TSGKGSIQFAGQPLEAWS 67
Query: 65 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTM 124
+K+ +L+ ++T +A + + LT Q +K +++N++ D
Sbjct: 68 ATKLALHR------AYLSQQQTPPFATPVW--HYLTLHQHDKTRTELLNDVAGALALDDK 119
Query: 125 IGGSFVRGVSGGERKRVCIGNEII-----INPS--LLFLDEPTSGLDSTTALRIVQMLQD 177
+G S +SGGE +RV + ++ NP+ LL LD+P LD + ++L
Sbjct: 120 LGRS-TNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVAQQSALDKILSA 178
Query: 178 IAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221
+++ G +V + H + L H +L G G +L G+ E +
Sbjct: 179 LSQQGLAIVMSSHDLNHTLRHAHRAWLLKG-GKMLASGRREEVL 221
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 104/219 (47%), Gaps = 20/219 (9%)
Query: 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN-----DHPYSKSL 64
+ GI V G+++ L+G +G+GKTT L+ ++G + G I +N + P
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQK--GKIIFNGQDITNKPAHVIN 79
Query: 65 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTM 124
+ I V + +FP LTV E L A R ++ KR ++ I L R ++ +
Sbjct: 80 RXGIALVPEGRRIFPELTVYENLXXGAYNR-----KDKEGIKRDLEWIFSL-FPRLKERL 133
Query: 125 --IGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG 182
+GG+ SGGE++ + IG + P LL DEP+ GL + +++Q I + G
Sbjct: 134 KQLGGTL----SGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQEG 189
Query: 183 KTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221
T++ + Q + +L G ++ GKASE +
Sbjct: 190 TTIL-LVEQNALGALKVAHYGYVLETGQIVLEGKASELL 227
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 107/224 (47%), Gaps = 22/224 (9%)
Query: 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVG-GSITYNDHPYSKSL 64
E L ++G V GE+L L+GP+G+GK+TLL +G T G GSI + P
Sbjct: 12 ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGX----TSGKGSIQFAGQPLEAWS 67
Query: 65 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTM 124
+K+ +L+ ++T +A + + LT Q +K +++N++ D
Sbjct: 68 ATKLALHR------AYLSQQQTPPFATPVW--HYLTLHQHDKTRTELLNDVAGALALDDK 119
Query: 125 IGGSFVRGVSGGERKRVCIGNEII-----INPS--LLFLDEPTSGLDSTTALRIVQMLQD 177
+G S +SGGE +RV + ++ NP+ LL LDEP + LD + ++L
Sbjct: 120 LGRS-TNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSA 178
Query: 178 IAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221
+++ G +V + H + L H +L G G L G+ E +
Sbjct: 179 LSQQGLAIVXSSHDLNHTLRHAHRAWLLKG-GKXLASGRREEVL 221
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 89/196 (45%), Gaps = 30/196 (15%)
Query: 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 65
E + + +N G++LA++G +G GK+TLL+LL G + P G Y
Sbjct: 17 ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLG-IHRPIQGKIEVY---------- 65
Query: 66 SKIGFVTQDDVLFPHLTVKETLTYAALLRLP--NTLTK-----QQKEKRAIDVINELGLE 118
IGFV Q F L + R NT K Q +A+D +N L
Sbjct: 66 QSIGFVPQ---FFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLA 122
Query: 119 RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI 178
+ + T +SGG+R+ + I I L+ LDEPTS LD ++ +L D+
Sbjct: 123 KREFT--------SLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDL 174
Query: 179 AEA-GKTVVTTIHQPS 193
A++ TVV T HQP+
Sbjct: 175 AQSQNMTVVFTTHQPN 190
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 106/224 (47%), Gaps = 22/224 (9%)
Query: 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVG-GSITYNDHPYSKSL 64
E L ++G V GE+L L+GP+G+GK+TLL +G T G GSI + P
Sbjct: 12 ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGX----TSGKGSIQFAGQPLEAWS 67
Query: 65 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTM 124
+K+ +L+ ++T +A + + LT Q +K +++N++ D
Sbjct: 68 ATKLALHR------AYLSQQQTPPFATPVW--HYLTLHQHDKTRTELLNDVAGALALDDK 119
Query: 125 IGGSFVRGVSGGERKRVCIGNEII-----INPS--LLFLDEPTSGLDSTTALRIVQMLQD 177
+G S +SGGE +RV + ++ NP+ LL LDEP + LD + ++L
Sbjct: 120 LGRS-TNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSA 178
Query: 178 IAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221
+ + G +V + H + L H +L G G L G+ E +
Sbjct: 179 LCQQGLAIVXSSHDLNHTLRHAHRAWLLKG-GKXLASGRREEVL 221
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 100/213 (46%), Gaps = 15/213 (7%)
Query: 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL-KSK 67
+L + G++ ++G +GSGKTTLL +L+G L G I + P L +
Sbjct: 26 VLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLL---AAAGEIFLDGSPADPFLLRKN 82
Query: 68 IGFVTQD-DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIG 126
+G+V Q+ TV+E + ++ + L + + KR V+ +GL + +
Sbjct: 83 VGYVFQNPSSQIIGATVEEDVAFSLEIM---GLDESEMRKRIKKVLELVGL-----SGLA 134
Query: 127 GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVV 186
+ +SGG+++R+ I + + + L LDEP S LD + I Q+L+ + GK ++
Sbjct: 135 AADPLNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNEGKGII 194
Query: 187 TTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 219
H+ D ++ + G++ + G E
Sbjct: 195 LVTHE--LEYLDDMDFILHISNGTIDFCGSWEE 225
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 106/227 (46%), Gaps = 23/227 (10%)
Query: 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKI- 68
L+G++ SVN G+V ++GP+GSGK+TL+N+++G L G + + + + +++
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADE--GRVYFENKDITNKEPAELY 80
Query: 69 --GFVT--QDDVLFPHLTVKETLTYAALLRLPNTLT----------KQQKEKRAIDVINE 114
G V Q +TV E L + + L +++ ++A ++
Sbjct: 81 HYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEF 140
Query: 115 LGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQM 174
L L D G +SGG+ K V IG ++ NP ++ +DEP +G+ A I
Sbjct: 141 LKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNH 195
Query: 175 LQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221
+ ++ G T + H+ L + D L ++ G ++ G+ E +
Sbjct: 196 VLELKAKGITFLIIEHRLDIVLNY-IDHLYVMFNGQIIAEGRGEEEI 241
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 108/227 (47%), Gaps = 22/227 (9%)
Query: 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS--- 61
+++ ++N ++ + GE++A++GP+G+GK+TLL LL+G L P+ G + S
Sbjct: 22 QQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYL-SPSHGECHLLGQNLNSWQP 80
Query: 62 KSLKSKIGFVTQ-DDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC 120
K+L + Q ++ FP +V E + R P + ++++A+ + + +
Sbjct: 81 KALARTRAVMRQYSELAFP-FSVSEVIQMG---RAPYGGS---QDRQALQQV----MAQT 129
Query: 121 QDTMIGGSFVRGVSGGERKRVCIGNEII------INPSLLFLDEPTSGLDSTTALRIVQM 174
+ R +SGGE++RV + + P LFLDEPTS LD +++
Sbjct: 130 DCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRL 189
Query: 175 LQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221
L+ + V + + D+++LL +G L+ G E +
Sbjct: 190 LRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVL 236
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 100/219 (45%), Gaps = 35/219 (15%)
Query: 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKI 68
+L I + G++LA+ G +G+GKT+LL ++ G L EP+ G I ++ +I
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL-EPSE-GKIKHS---------GRI 101
Query: 69 GFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC------QD 122
F +Q+ + P T+KE N + E R VI LE +D
Sbjct: 102 SFCSQNSWIMPG-TIKE-----------NIIGVSYDEYRYRSVIKACQLEEDISKFAEKD 149
Query: 123 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG 182
++ G +SGG+R R+ + + + L LD P LD T I + A
Sbjct: 150 NIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMAN 209
Query: 183 KTVVTTIHQPSSRLFH--KFDKLILLGKGSLLYFGKASE 219
KT + +S++ H K DK+++L +GS ++G SE
Sbjct: 210 KTRILV----TSKMEHLKKADKILILHEGSSYFYGTFSE 244
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 100/219 (45%), Gaps = 35/219 (15%)
Query: 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKI 68
+L I + G++LA+ G +G+GKT+LL ++ G L EP+ G I ++ +I
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL-EPSE-GKIKHS---------GRI 101
Query: 69 GFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC------QD 122
F +Q+ + P T+KE N + E R VI LE +D
Sbjct: 102 SFCSQNSWIMPG-TIKE-----------NIIGVSYDEYRYRSVIKACQLEEDISKFAEKD 149
Query: 123 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG 182
++ G +SGG+R R+ + + + L LD P LD T I + A
Sbjct: 150 NIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMAN 209
Query: 183 KTVVTTIHQPSSRLFH--KFDKLILLGKGSLLYFGKASE 219
KT + +S++ H K DK+++L +GS ++G SE
Sbjct: 210 KTRILV----TSKMEHLKKADKILILHEGSSYFYGTFSE 244
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 99/219 (45%), Gaps = 34/219 (15%)
Query: 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKI 68
+L I + G++LA+ G +G+GKT+LL ++ G L EP+ G I ++ +I
Sbjct: 35 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL-EPSE-GKIKHS---------GRI 83
Query: 69 GFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC------QD 122
F +Q + P T+KE + + E R VI LE +D
Sbjct: 84 SFCSQFSWIMPG-TIKENIIFGV----------SYDEYRYRSVIKACQLEEDISKFAEKD 132
Query: 123 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG 182
++ G +SGG+R R+ + + + L LD P LD T I + A
Sbjct: 133 NIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMAN 192
Query: 183 KTVVTTIHQPSSRLFH--KFDKLILLGKGSLLYFGKASE 219
KT + +S++ H K DK+++L +GS ++G SE
Sbjct: 193 KTRILV----TSKMEHLKKADKILILHEGSSYFYGTFSE 227
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 55/227 (24%), Positives = 106/227 (46%), Gaps = 23/227 (10%)
Query: 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKI- 68
L+G++ SVN G+V ++GP+GSGK+TL+N+++G L G + + + + +++
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADE--GRVYFENKDITNKEPAELY 80
Query: 69 --GFVT--QDDVLFPHLTVKETLTYAALLRLPNTLT----------KQQKEKRAIDVINE 114
G V Q +TV E L + + L +++ ++A ++
Sbjct: 81 HYGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEF 140
Query: 115 LGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQM 174
L L D G +SGG+ K V IG ++ NP ++ +D+P +G+ A I
Sbjct: 141 LKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNH 195
Query: 175 LQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221
+ ++ G T + H+ L + D L ++ G ++ G+ E +
Sbjct: 196 VLELKAKGITFLIIEHRLDIVLNY-IDHLYVMFNGQIIAEGRGEEEI 241
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 99/219 (45%), Gaps = 34/219 (15%)
Query: 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKI 68
+L I + G++LA+ G +G+GKT+LL ++ G L EP+ G I ++ +I
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL-EPSE-GKIKHS---------GRI 71
Query: 69 GFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC------QD 122
F +Q + P T+KE + + E R VI LE +D
Sbjct: 72 SFCSQFSWIMPG-TIKENIIFGV----------SYDEYRYRSVIKACQLEEDISKFAEKD 120
Query: 123 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG 182
++ G +SGG+R R+ + + + L LD P LD T I + A
Sbjct: 121 NIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMAN 180
Query: 183 KTVVTTIHQPSSRLFH--KFDKLILLGKGSLLYFGKASE 219
KT + +S++ H K DK+++L +GS ++G SE
Sbjct: 181 KTRILV----TSKMEHLKKADKILILHEGSSYFYGTFSE 215
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 98/219 (44%), Gaps = 34/219 (15%)
Query: 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKI 68
+L I ++ GE+LA+ G +GSGKT+LL L+ G L G I ++ ++
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGEL--EASEGIIKHS---------GRV 101
Query: 69 GFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC------QD 122
F +Q + P T+KE + + E R V+ L++ QD
Sbjct: 102 SFCSQFSWIMPG-TIKENIIFGV----------SYDEYRYKSVVKACQLQQDITKFAEQD 150
Query: 123 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG 182
+ G +SGG+R R+ + + + L LD P LD T ++ + A
Sbjct: 151 NTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMAN 210
Query: 183 KTVVTTIHQPSSRLFH--KFDKLILLGKGSLLYFGKASE 219
KT + +S++ H K DK+++L +GS ++G SE
Sbjct: 211 KTRILV----TSKMEHLRKADKILILHQGSSYFYGTFSE 245
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 98/219 (44%), Gaps = 34/219 (15%)
Query: 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKI 68
+L I ++ GE+LA+ G +GSGKT+LL L+ G L G I ++ ++
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASE--GIIKHS---------GRV 101
Query: 69 GFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC------QD 122
F +Q + P T+KE + + E R V+ L++ QD
Sbjct: 102 SFCSQFSWIMPG-TIKENIIFGV----------SYDEYRYKSVVKACQLQQDITKFAEQD 150
Query: 123 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG 182
+ G +SGG+R R+ + + + L LD P LD T ++ + A
Sbjct: 151 NTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMAN 210
Query: 183 KTVVTTIHQPSSRLFH--KFDKLILLGKGSLLYFGKASE 219
KT + +S++ H K DK+++L +GS ++G SE
Sbjct: 211 KTRILV----TSKMEHLRKADKILILHQGSSYFYGTFSE 245
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 99/219 (45%), Gaps = 35/219 (15%)
Query: 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKI 68
+L I + G++LA+ G +G+GKT+LL ++ G L EP+ G I ++ +I
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL-EPSE-GKIKHS---------GRI 71
Query: 69 GFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC------QD 122
F +Q + P T+KE N + E R VI LE +D
Sbjct: 72 SFCSQFSWIMPG-TIKE-----------NIIGVSYDEYRYRSVIKACQLEEDISKFAEKD 119
Query: 123 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG 182
++ G +SGG+R R+ + + + L LD P LD T I + A
Sbjct: 120 NIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMAN 179
Query: 183 KTVVTTIHQPSSRLFH--KFDKLILLGKGSLLYFGKASE 219
KT + +S++ H K DK+++L +GS ++G SE
Sbjct: 180 KTRILV----TSKMEHLKKADKILILHEGSSYFYGTFSE 214
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 90/184 (48%), Gaps = 21/184 (11%)
Query: 17 VNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND----------HPYSKSLKS 66
V G V+ ++GP+G+GK+T + +L+G+L+ G + +++ Y + LK+
Sbjct: 44 VKEGXVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKN 103
Query: 67 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIG 126
G + V+ P + + A ++ L K + + +V+ L LE + I
Sbjct: 104 --GEIRP--VVKPQYV--DLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREI- 156
Query: 127 GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVV 186
+ +SGGE +RV I ++ N + F DEP+S LD L + ++ ++E GK+V+
Sbjct: 157 ----QHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVL 212
Query: 187 TTIH 190
H
Sbjct: 213 VVEH 216
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 93/203 (45%), Gaps = 24/203 (11%)
Query: 15 GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQD 74
G + GEV+ ++GP+G GKTT + L+G + EPT G I ++ ++ K ++ D
Sbjct: 307 GEIKKGEVIGIVGPNGIGKTTFVKXLAG-VEEPTEG-KIEWD-----LTVAYKPQYIKAD 359
Query: 75 DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 134
TV E L+ +L + K + ++ LG+ D V +S
Sbjct: 360 ----YEGTVYELLSKIDASKLNSNFYKTE-------LLKPLGIIDLYDRE-----VNELS 403
Query: 135 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSS 194
GGE +RV I ++ + + LDEP++ LD L + + ++ + E + +
Sbjct: 404 GGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALVVEHDVL 463
Query: 195 RLFHKFDKLILLGKGSLLYFGKA 217
+ + D+L + +G +G+A
Sbjct: 464 XIDYVSDRLXVF-EGEPGKYGRA 485
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/227 (24%), Positives = 105/227 (46%), Gaps = 23/227 (10%)
Query: 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKI- 68
L+G++ SV G+V ++GP+GSGK+TL+N+++G L G + + + + +++
Sbjct: 23 LDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADE--GRVYFENKDITNKEPAELY 80
Query: 69 --GFVT--QDDVLFPHLTVKETLTYAALLRLPNTLT----------KQQKEKRAIDVINE 114
G V Q +TV E L + + L +++ ++A ++
Sbjct: 81 HYGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEF 140
Query: 115 LGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQM 174
L L D G +SGG+ K V IG ++ NP ++ +DEP +G+ A I
Sbjct: 141 LKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNH 195
Query: 175 LQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221
+ ++ G T + H+ L + D L ++ G ++ G+ E +
Sbjct: 196 VLELKAKGITFLIIEHRLDIVLNY-IDHLYVMFNGQIIAEGRGEEEI 241
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 98/219 (44%), Gaps = 35/219 (15%)
Query: 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKI 68
+L I ++ GE+LA+ G +GSGKT+LL L+ G L G I ++ ++
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASE--GIIKHS---------GRV 101
Query: 69 GFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC------QD 122
F +Q + P T+KE N + E R V+ L++ QD
Sbjct: 102 SFCSQFSWIMPG-TIKE-----------NIIGVSYDEYRYKSVVKACQLQQDITKFAEQD 149
Query: 123 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG 182
+ G +SGG+R R+ + + + L LD P LD T ++ + A
Sbjct: 150 NTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMAN 209
Query: 183 KTVVTTIHQPSSRLFH--KFDKLILLGKGSLLYFGKASE 219
KT + +S++ H K DK+++L +GS ++G SE
Sbjct: 210 KTRILV----TSKMEHLRKADKILILHQGSSYFYGTFSE 244
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 98/219 (44%), Gaps = 34/219 (15%)
Query: 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKI 68
+L I + G++LA+ G +G+GKT+LL ++ G L EP+ G I ++ +I
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL-EPSE-GKIKHS---------GRI 101
Query: 69 GFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC------QD 122
F +Q + P T+KE + E R VI LE +D
Sbjct: 102 SFCSQFSWIMPG-TIKENIIAGV----------SYDEYRYRSVIKACQLEEDISKFAEKD 150
Query: 123 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG 182
++ G +SGG+R R+ + + + L LD P LD T I + A
Sbjct: 151 NIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMAN 210
Query: 183 KTVVTTIHQPSSRLFH--KFDKLILLGKGSLLYFGKASE 219
KT + +S++ H K DK+++L +GS ++G SE
Sbjct: 211 KTRILV----TSKMEHLKKADKILILHEGSSYFYGTFSE 245
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 97/219 (44%), Gaps = 34/219 (15%)
Query: 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKI 68
+L I ++ GE+LA+ G +GSGKT+LL L+ G L G I ++ ++
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGEL--EASEGIIKHS---------GRV 101
Query: 69 GFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC------QD 122
F +Q + P T+KE + E R V+ L++ QD
Sbjct: 102 SFCSQFSWIMPG-TIKENIIRGV----------SYDEYRYKSVVKACQLQQDITKFAEQD 150
Query: 123 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG 182
+ G +SGG+R R+ + + + L LD P LD T ++ + A
Sbjct: 151 NTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMAN 210
Query: 183 KTVVTTIHQPSSRLFH--KFDKLILLGKGSLLYFGKASE 219
KT + +S++ H K DK+++L +GS ++G SE
Sbjct: 211 KTRILV----TSKMEHLRKADKILILHQGSSYFYGTFSE 245
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 97/219 (44%), Gaps = 34/219 (15%)
Query: 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKI 68
+L I ++ GE+LA+ G +GSGKT+LL L+ G L G I ++ ++
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASE--GIIKHS---------GRV 101
Query: 69 GFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC------QD 122
F +Q + P T+KE + E R V+ L++ QD
Sbjct: 102 SFCSQFSWIMPG-TIKENIISGV----------SYDEYRYKSVVKACQLQQDITKFAEQD 150
Query: 123 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG 182
+ G +SGG+R R+ + + + L LD P LD T ++ + A
Sbjct: 151 NTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMAN 210
Query: 183 KTVVTTIHQPSSRLFH--KFDKLILLGKGSLLYFGKASE 219
KT + +S++ H K DK+++L +GS ++G SE
Sbjct: 211 KTRILV----TSKMEHLRKADKILILHQGSSYFYGTFSE 245
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 86/179 (48%), Gaps = 15/179 (8%)
Query: 2 TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH--- 58
S + + IL G+ V GEV ALMGP+G+GK+TL +L+G G I +
Sbjct: 11 ASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENIL 70
Query: 59 PYSKSLKSKIGFVT--QDDVLFPHLTVKETLTYAALLRLPNTLTKQQ---KEKRAIDVIN 113
S +++ G Q V P +T+ L A +L + + K K+A+++++
Sbjct: 71 ELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLD 130
Query: 114 ELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIV 172
++ + G SGGE+KR I +++ P+ LDE SGLD AL++V
Sbjct: 131 ------WDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLD-IDALKVV 182
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 101/200 (50%), Gaps = 19/200 (9%)
Query: 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 65
+K +L IT ++ G V+ GP+G GKTTLL +S L + G I YN P +K +K
Sbjct: 21 DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYL--KPLKGEIIYNGVPITK-VK 77
Query: 66 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMI 125
KI F+ ++ ++ ++V++ L A+ L + + A++ + L L++ +
Sbjct: 78 GKIFFLPEEIIVPRKISVEDYL--KAVASLYGVKVNKNEIMDALESVEVLDLKKKLGEL- 134
Query: 126 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ-MLQDIAEAGKT 184
S G +RV + + +++N + LD+P +D + ++++ +L+ + E G
Sbjct: 135 --------SQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIV 186
Query: 185 VVTTIHQPS----SRLFHKF 200
++++ + S + HK+
Sbjct: 187 IISSREELSYCDVNENLHKY 206
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 85/180 (47%), Gaps = 42/180 (23%)
Query: 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSIT-YNDHPYSKSLK 65
K IL I+ + G+ L G +G+GKTTLLN+L+ EP G++ + P
Sbjct: 34 KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNA--YEPATSGTVNLFGKXP------ 85
Query: 66 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVI-----NELGLERC 120
K+G+ + TV++ + + + + L K Q+ +R IDV+ +G+ +
Sbjct: 86 GKVGYSAE--------TVRQHIGFVS----HSLLEKFQEGERVIDVVISGAFKSIGVYQD 133
Query: 121 QD-----------TMIGGS-----FVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLD 164
D ++G S ++ +S GE++RV I + P +L LDEP +GLD
Sbjct: 134 IDDEIRNEAHQLLKLVGXSAKAQQYIGYLSTGEKQRVXIARALXGQPQVLILDEPAAGLD 193
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 104/234 (44%), Gaps = 39/234 (16%)
Query: 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKI 68
+L I + G++LA+ G +G+GKT+LL ++ G L EP+ G I ++ +I
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL-EPSE-GKIKHS---------GRI 101
Query: 69 GFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC------QD 122
F +Q + P T+KE + + E R VI LE +D
Sbjct: 102 SFCSQFSWIMPG-TIKENIIFGV----------SYDEYRYRSVIKACQLEEDISKFAEKD 150
Query: 123 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG 182
++ G +S G++ ++ + + + L LD P LD T I + A
Sbjct: 151 NIVLGEGGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMAN 210
Query: 183 KTVVTTIHQPSSRLFH--KFDKLILLGKGSLLYFGKASEAMAY---FSS--IGC 229
KT + +S++ H K DK+++L +GS ++G SE FSS +GC
Sbjct: 211 KTRILV----TSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSKLMGC 260
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/234 (26%), Positives = 104/234 (44%), Gaps = 40/234 (17%)
Query: 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKI 68
+L I + G++LA+ G +G+GKT+LL ++ G L EP+ G I ++ +I
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL-EPSE-GKIKHS---------GRI 101
Query: 69 GFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC------QD 122
F +Q + P T+KE N + E R VI LE +D
Sbjct: 102 SFCSQFSWIMPG-TIKE-----------NIIGVSYDEYRYRSVIKACQLEEDISKFAEKD 149
Query: 123 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG 182
++ G +S G++ ++ + + + L LD P LD T I + A
Sbjct: 150 NIVLGEGGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMAN 209
Query: 183 KTVVTTIHQPSSRLFH--KFDKLILLGKGSLLYFGKASEAMAY---FSS--IGC 229
KT + +S++ H K DK+++L +GS ++G SE FSS +GC
Sbjct: 210 KTRILV----TSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSKLMGC 259
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 90/182 (49%), Gaps = 17/182 (9%)
Query: 17 VNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDV 76
V G V+ ++GP+G+GKTT + +L+G+L+ ++ ++ + +++ G Q+
Sbjct: 114 VKDGMVVGIVGPNGTGKTTAVKILAGQLIP-----NLCEDNDSWDNVIRAFRGNELQN-- 166
Query: 77 LFPHLT---VKETLTYAALLRLPNTLTKQQKEKRAIDVINELG-----LERCQDTMIGGS 128
F L ++ + + LP + + +E + ++E+G ++ + +
Sbjct: 167 YFERLKNGEIRPVVKPQYVDLLPKAVKGKVRE--LLKKVDEVGKFEEVVKELELENVLDR 224
Query: 129 FVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTT 188
+ +SGGE +RV I ++ F DEP+S LD L++ ++++ +A GK V+
Sbjct: 225 ELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVV 284
Query: 189 IH 190
H
Sbjct: 285 EH 286
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 93/208 (44%), Gaps = 24/208 (11%)
Query: 15 GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQD 74
G + GEV+ ++GP+G GKTT + +L+G + EPT G + ++ K ++ +
Sbjct: 377 GEIRKGEVIGIVGPNGIGKTTFVKMLAG-VEEPTEGKV------EWDLTVAYKPQYIKAE 429
Query: 75 DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 134
TV E L+ +L + K + ++ LG+ D V +S
Sbjct: 430 ----YEGTVYELLSKIDSSKLNSNFYKTE-------LLKPLGIIDLYDRN-----VEDLS 473
Query: 135 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSS 194
GGE +RV I ++ + + LDEP++ LD L + + ++ + E + +
Sbjct: 474 GGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL 533
Query: 195 RLFHKFDKLILLGKGSLLYFGKASEAMA 222
+ + D+LI+ +G G+A M
Sbjct: 534 MIDYVSDRLIVF-EGEPGRHGRALPPMG 560
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 90/183 (49%), Gaps = 17/183 (9%)
Query: 17 VNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDV 76
V G V+ ++GP+G+GKTT + +L+G+L+ ++ ++ + +++ G Q+
Sbjct: 100 VKDGMVVGIVGPNGTGKTTAVKILAGQLIP-----NLCEDNDSWDNVIRAFRGNELQN-- 152
Query: 77 LFPHLT---VKETLTYAALLRLPNTLTKQQKEKRAIDVINELG-----LERCQDTMIGGS 128
F L ++ + + LP + + +E + ++E+G ++ + +
Sbjct: 153 YFERLKNGEIRPVVKPQYVDLLPKAVKGKVRE--LLKKVDEVGKFEEVVKELELENVLDR 210
Query: 129 FVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTT 188
+ +SGGE +RV I ++ F DEP+S LD L++ ++++ +A GK V+
Sbjct: 211 ELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVV 270
Query: 189 IHQ 191
H
Sbjct: 271 EHD 273
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 93/208 (44%), Gaps = 24/208 (11%)
Query: 15 GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQD 74
G + GEV+ ++GP+G GKTT + +L+G + EPT G + ++ K ++ +
Sbjct: 363 GEIRKGEVIGIVGPNGIGKTTFVKMLAG-VEEPTEGKV------EWDLTVAYKPQYIKAE 415
Query: 75 DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 134
TV E L+ +L + K + ++ LG+ D V +S
Sbjct: 416 ----YEGTVYELLSKIDSSKLNSNFYKTE-------LLKPLGIIDLYDRN-----VEDLS 459
Query: 135 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSS 194
GGE +RV I ++ + + LDEP++ LD L + + ++ + E + +
Sbjct: 460 GGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL 519
Query: 195 RLFHKFDKLILLGKGSLLYFGKASEAMA 222
+ + D+LI+ +G G+A M
Sbjct: 520 MIDYVSDRLIVF-EGEPGRHGRALPPMG 546
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 82/184 (44%), Gaps = 18/184 (9%)
Query: 19 PGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP---------YSKSLKSKIG 69
PG+VL L+G +G GK+T L +L+G+ +P +G ++D P L++
Sbjct: 102 PGQVLGLVGTNGIGKSTALKILAGK-QKPNLG---RFDDPPEWQEIIKYFRGSELQNYFT 157
Query: 70 FVTQDDV---LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIG 126
+ +DD+ + P ++ L K + EK DV + + + ++ +
Sbjct: 158 KMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVL-- 215
Query: 127 GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVV 186
+ +SGGE +R IG + + DEP+S LD L Q+++ + K V+
Sbjct: 216 KRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVI 275
Query: 187 TTIH 190
H
Sbjct: 276 CVEH 279
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 70/161 (43%), Gaps = 31/161 (19%)
Query: 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKI 68
+LN G + E+L +MG +G+GKTTL+ LL+G L +P G I K+
Sbjct: 367 VLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGAL-KPDEGQDI------------PKL 413
Query: 69 GFVTQDDVLFPHL--TVKETL--TYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTM 124
+ + P TV++ P T K R D+I++
Sbjct: 414 NVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQE--------- 464
Query: 125 IGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS 165
V+ +SGGE +RV I + I + +DEP++ LDS
Sbjct: 465 -----VQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDS 500
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 82/179 (45%), Gaps = 24/179 (13%)
Query: 11 NGITGSVNPGEVLALMGPSGSGKTTLLNLLS------GRLMEPTV----GGSITYNDHPY 60
+GI+ + V A++G S SGK+T++ ++ GR++ V +T +
Sbjct: 25 DGISLDILENSVTAIVGESASGKSTIIEAMTKTLPPNGRILSGRVLYKGKDLLTMREEEL 84
Query: 61 SKSLKSKIGFVTQ--DDVLFPHLTV----KETLTYAALLRLPNTLTKQQKEKRAIDVINE 114
K +I V Q L P + V K+T+ + + L ++ EK
Sbjct: 85 RKIRWKEIALVPQAAQQSLNPTMKVIEHFKDTVEAHGVRWSHSELIEKASEK-------- 136
Query: 115 LGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ 173
L + R + S+ +SGG ++RV I ++++P +L LDEPTS LD T I+Q
Sbjct: 137 LRMVRLNPEAVLNSYPLQLSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQ 195
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 99/218 (45%), Gaps = 26/218 (11%)
Query: 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIG 69
LNGIT S+ G ++A++G G GK++LL+ L + + V G + ++K +
Sbjct: 21 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDK--VEGHV---------AIKGSVA 69
Query: 70 FVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD-TMIGGS 128
+V Q + +++E + + L P + Q A ++ +L + D T IG
Sbjct: 70 YVPQ-QAWIQNDSLRENILFGCQLEEPYYRSVIQ----ACALLPDLEILPSGDRTEIGEK 124
Query: 129 FVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG----KT 184
V +SGG+++RV + + N + D+P S +D+ I + + I G KT
Sbjct: 125 GVN-LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENV--IGPKGMLKNKT 181
Query: 185 VVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222
+ H S + D +I++ G + G E +A
Sbjct: 182 RILVTH--SMSYLPQVDVIIVMSGGKISEMGSYQELLA 217
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 78/171 (45%), Gaps = 28/171 (16%)
Query: 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN----DHPYSKSL 64
IL I+ S++PG+ + L+G +GSGK+TLL+ RL+ G I + D +
Sbjct: 36 ILENISFSISPGQRVGLLGRTGSGKSTLLSAFL-RLL--NTEGEIQIDGVSWDSITLEQW 92
Query: 65 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD-- 122
+ G + Q +F T ++ L PN Q+ + D E+GL +
Sbjct: 93 RKAFGVIPQKVFIFSG-TFRKNLD-------PNAAHSDQEIWKVAD---EVGLRSVIEQF 141
Query: 123 ------TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTT 167
++ G V +S G ++ +C+ ++ +L LDEP++ LD T
Sbjct: 142 PGKLDFVLVDGGCV--LSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVT 190
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 63/138 (45%), Gaps = 16/138 (11%)
Query: 106 KRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEI---IINPSLLFLDEPTSG 162
KR + V++++GL + G +SGGE +R+ + +E+ +L LDEPT G
Sbjct: 783 KRTLQVLHDVGLGYVK----LGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVG 838
Query: 163 LDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222
L ++V++L + + G TV+ H + D +I LG + +
Sbjct: 839 LHFEDVRKLVEVLHRLVDRGNTVIVIEHNLD--VIKNADHIIDLGP-------EGGKEGG 889
Query: 223 YFSSIGCSPQIAMNPAEF 240
Y + G +IA NP +
Sbjct: 890 YIVATGTPEEIAKNPHSY 907
Score = 35.4 bits (80), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 133 VSGGERKRVCIGNEII--INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIH 190
+SGGE +R+ + +I + + LDEPT GL R+++ L+ + + G TV+ H
Sbjct: 465 LSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEH 524
Query: 191 Q 191
Sbjct: 525 D 525
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 83/195 (42%), Gaps = 25/195 (12%)
Query: 14 TGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQ 73
G GE++ ++GP+G GKTT +L G + GS+T P + L K
Sbjct: 288 NGEAKEGEIIGILGPNGIGKTTFARILVGEITADE--GSVT----PEKQILSYK------ 335
Query: 74 DDVLFPHL--TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVR 131
+FP+ TV++ L A+ L + + +V L L R + S V
Sbjct: 336 PQRIFPNYDGTVQQYLENASKDALSTSSWFFE------EVTKRLNLHRLLE-----SNVN 384
Query: 132 GVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQ 191
+SGGE +++ I + L LD+P+S LD + + ++ + K V I
Sbjct: 385 DLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDH 444
Query: 192 PSSRLFHKFDKLILL 206
S + D++I+
Sbjct: 445 DLSIHDYIADRIIVF 459
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 81/190 (42%), Gaps = 40/190 (21%)
Query: 22 VLALMGPSGSGKTTLLNLLSGRLMEPTVG----------------GSITYN--DHPYSKS 63
+L ++G +G GKTT+L +L+G ++ P G G YN YS
Sbjct: 27 ILGVLGKNGVGKTTVLKILAGEII-PNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNE 85
Query: 64 LK--SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 121
LK KI +V F TV E LT + ++ K+ +++N L +
Sbjct: 86 LKIVHKIQYVEYASK-FLKGTVNEILT---------KIDERGKKDEVKELLNMTNL-WNK 134
Query: 122 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA 181
D I +SGG +R+ + ++ + D+P+S LD + + + ++++ +
Sbjct: 135 DANI-------LSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK- 186
Query: 182 GKTVVTTIHQ 191
K V+ H
Sbjct: 187 NKYVIVVDHD 196
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 7/88 (7%)
Query: 107 RAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINP---SLLFLDEPTSGL 163
RA+D + E+GL + G +SGGE +R+ + E+ + ++ LDEPT+GL
Sbjct: 709 RALDTLREVGL----GYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGL 764
Query: 164 DSTTALRIVQMLQDIAEAGKTVVTTIHQ 191
R+ + L + +AG TV+ H+
Sbjct: 765 HPADVERLQRQLVKLVDAGNTVIAVEHK 792
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 28/35 (80%), Gaps = 1/35 (2%)
Query: 23 LALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND 57
+A++GP+G+GK+TL+N+L+G L+ PT G T+ +
Sbjct: 696 IAVIGPNGAGKSTLINVLTGELL-PTSGEVYTHEN 729
Score = 36.2 bits (82), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 49/89 (55%), Gaps = 8/89 (8%)
Query: 99 LTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 158
LT+++ E+ + LGL+ ++ S +RG+SGG++ ++ + P L+ LDE
Sbjct: 869 LTRKEIEEHC----SXLGLD---PEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDE 921
Query: 159 PTSGLDSTTALRIVQMLQDIAEAGKTVVT 187
PT+ LD + + + L++ E G ++T
Sbjct: 922 PTNYLDRDSLGALSKALKEF-EGGVIIIT 949
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 66/167 (39%), Gaps = 30/167 (17%)
Query: 25 LMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVK 84
+ GP+G GK+TL ++ ++ GF TQ++ ++
Sbjct: 460 ICGPNGCGKSTLXRAIANGQVD----------------------GFPTQEECRTVYVEHD 497
Query: 85 ETLTYAALLRLPNTLTKQQKEKRAI-DVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 143
T++ L K AI D + E G D I + +SGG + ++ +
Sbjct: 498 IDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGF---TDEXIAXP-ISALSGGWKXKLAL 553
Query: 144 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIH 190
++ N +L LDEPT+ LD+ +V L G T +T H
Sbjct: 554 ARAVLRNADILLLDEPTNHLDTVNVAWLVNYLN---TCGITSITISH 597
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 28/35 (80%), Gaps = 1/35 (2%)
Query: 23 LALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND 57
+A++GP+G+GK+TL+N+L+G L+ PT G T+ +
Sbjct: 702 IAVIGPNGAGKSTLINVLTGELL-PTSGEVYTHEN 735
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 49/89 (55%), Gaps = 8/89 (8%)
Query: 99 LTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 158
LT+++ E+ + LGL+ ++ S +RG+SGG++ ++ + P L+ LDE
Sbjct: 875 LTRKEIEEHC----SXLGLD---PEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDE 927
Query: 159 PTSGLDSTTALRIVQMLQDIAEAGKTVVT 187
PT+ LD + + + L++ E G ++T
Sbjct: 928 PTNYLDRDSLGALSKALKEF-EGGVIIIT 955
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 66/167 (39%), Gaps = 30/167 (17%)
Query: 25 LMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVK 84
+ GP+G GK+TL ++ ++ GF TQ++ ++
Sbjct: 466 ICGPNGCGKSTLXRAIANGQVD----------------------GFPTQEECRTVYVEHD 503
Query: 85 ETLTYAALLRLPNTLTKQQKEKRAI-DVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 143
T++ L K AI D + E G D I + +SGG + ++ +
Sbjct: 504 IDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGF---TDEXIAXP-ISALSGGWKXKLAL 559
Query: 144 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIH 190
++ N +L LDEPT+ LD+ +V L G T +T H
Sbjct: 560 ARAVLRNADILLLDEPTNHLDTVNVAWLVNYLN---TCGITSITISH 603
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 28/35 (80%), Gaps = 1/35 (2%)
Query: 23 LALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND 57
+A++GP+G+GK+TL+N+L+G L+ PT G T+ +
Sbjct: 702 IAVIGPNGAGKSTLINVLTGELL-PTSGEVYTHEN 735
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 68/167 (40%), Gaps = 30/167 (17%)
Query: 25 LMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVK 84
+ GP+G GK+TL+ ++ ++ GF TQ++ ++
Sbjct: 466 ICGPNGCGKSTLMRAIANGQVD----------------------GFPTQEECRTVYVEHD 503
Query: 85 ETLTYAALLRLPNTLTKQQKEKRAI-DVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 143
T++ L K AI D + E G D MI + +SGG + ++ +
Sbjct: 504 IDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGF---TDEMIAMP-ISALSGGWKMKLAL 559
Query: 144 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIH 190
++ N +L LDEPT+ LD+ +V L G T +T H
Sbjct: 560 ARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT---CGITSITISH 603
Score = 36.2 bits (82), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 124 MIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGK 183
++ S +RG+SGG++ ++ + P L+ LDEPT+ LD + + + L++ E G
Sbjct: 893 IVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF-EGGV 951
Query: 184 TVVT 187
++T
Sbjct: 952 IIIT 955
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 51/106 (48%), Gaps = 12/106 (11%)
Query: 133 VSGGERKRVCIGNEI--IINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIH 190
+SGGE +R+ + +I + L LDEP+ GL R++ L+ + + G T++ H
Sbjct: 203 LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEH 262
Query: 191 QPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMN 236
+ L D LI +G G+ ++ G+ A +P+ MN
Sbjct: 263 DEDTML--AADYLIDIGPGAGIHGGEVVAA--------GTPEEVMN 298
Score = 36.2 bits (82), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Query: 104 KEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINP---SLLFLDEPT 160
K KR ++ + ++GL M G +SGGE +RV + E+ +L LDEPT
Sbjct: 519 KIKRKLETLYDVGL----GYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPT 574
Query: 161 SGLDSTTALRIVQMLQDIAEAGKTVVTTIHQ 191
+GL R++ +L + + G TV+ H
Sbjct: 575 TGLHVDDIARLLDVLHRLVDNGDTVLVIEHN 605
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Query: 133 VSGGERKRVCIGNEI--IINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIH 190
+SGGE +R+ + +I + L LDEP+ GL R++ L+ + + G T++ H
Sbjct: 505 LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEH 564
Query: 191 QPSSRLFHKFDKLILLGKGSLLYFGKASEA 220
+ L D LI +G G+ ++ G+ A
Sbjct: 565 DEDTML--AADYLIDIGPGAGIHGGEVVAA 592
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Query: 104 KEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINP---SLLFLDEPT 160
K KR ++ + ++GL M G +SGGE +RV + E+ +L LDEPT
Sbjct: 821 KIKRKLETLYDVGL----GYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPT 876
Query: 161 SGLDSTTALRIVQMLQDIAEAGKTVVTTIHQ 191
+GL R++ +L + + G TV+ H
Sbjct: 877 TGLHVDDIARLLDVLHRLVDNGDTVLVIEHN 907
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 4/90 (4%)
Query: 133 VSGGERKRVCIGNEI--IINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIH 190
+SGGE +R+ + +I + L LDEP+ GL R++ L+ + G T++ H
Sbjct: 505 LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSXRDLGNTLIVVEH 564
Query: 191 QPSSRLFHKFDKLILLGKGSLLYFGKASEA 220
+ L D LI +G G+ ++ G+ A
Sbjct: 565 DEDTXL--AADYLIDIGPGAGIHGGEVVAA 592
Score = 35.4 bits (80), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 133 VSGGERKRVCIGNEIIINP---SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTI 189
+SGGE +RV + E+ +L LDEPT+GL R++ +L + + G TV+
Sbjct: 846 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIE 905
Query: 190 HQ 191
H
Sbjct: 906 HN 907
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 90/216 (41%), Gaps = 45/216 (20%)
Query: 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 65
E+ L I VN GE + ++GP+GSGKTTLL +SG L PYS ++
Sbjct: 17 ERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL--------------PYSGNI- 60
Query: 66 SKIGFVTQDDVLFPHLTVKETLTYAALLRLP---------NTLTKQQKEKRAIDVINELG 116
F+ +V ++ + Y+ LP N + +E + +D +L
Sbjct: 61 ----FINGMEV----RKIRNYIRYST--NLPEAYEIGVTVNDIVYLYEELKGLD--RDLF 108
Query: 117 LERCQDTMIGGSFVR----GVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIV 172
LE + +G +R +S G+ V + P ++ LDEP +D+ I
Sbjct: 109 LEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVIS 168
Query: 173 QMLQDIAEAGKTVVTTIHQPSS-RLFHKFDKLILLG 207
+ I E GK + H+ L+ ++ L+G
Sbjct: 169 RY---IKEYGKEGILVTHELDMLNLYKEYKAYFLVG 201
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 133 VSGGERKRVCIGNEI---IINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTI 189
+SGGE +RV + +E+ ++ LDEPT+GL +++ ++ + + G TV+
Sbjct: 864 LSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIE 923
Query: 190 HQ 191
H
Sbjct: 924 HN 925
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
Query: 133 VSGGERKRVCIGNEII--INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIH 190
+SGGE +R+ + +I + L LDEP+ GL R+++ L + + G T++ H
Sbjct: 522 LSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEH 581
Query: 191 QPSSRLFHKFDKLILLGKGSLLYFGKASEAMAY 223
+ D ++ +G G+ + G+ + Y
Sbjct: 582 DEDT--IEHADWIVDIGPGAGEHGGRIVHSGPY 612
>pdb|3QF7|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QF7|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 15/87 (17%)
Query: 111 VINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINP------SLLFLDEPTSGLD 164
+I + G+ER RG+SGGER + I + + F+DE S LD
Sbjct: 267 IIKDWGIERP---------ARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLD 317
Query: 165 STTALRIVQMLQDIAEAGKTVVTTIHQ 191
+ +I +L+++ K +V H
Sbjct: 318 TENKEKIASVLKELERLNKVIVFITHD 344
>pdb|3C8U|A Chain A, Crystal Structure Of Putative Fructose Transport System
Kinase (Yp_612366.1) From Silicibacter Sp. Tm1040 At
1.95 A Resolution
Length = 208
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 18/114 (15%)
Query: 18 NPG-EVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND--HPYSKSLKSKIGFVTQD 74
PG +++AL G GSGK+TL N L+ L + + D H ++ L+ +
Sbjct: 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPXDGFHLDNRLLEPR------- 71
Query: 75 DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGS 128
L P ET + RL + L Q++ VI L +R +D I G+
Sbjct: 72 -GLLPRKGAPETFDFEGFQRLCHALKHQER------VIYPL-FDRARDIAIAGA 117
>pdb|3QG5|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QG5|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 15/87 (17%)
Query: 111 VINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINP------SLLFLDEPTSGLD 164
+I + G+ER RG+SGGER + I + F+DE S LD
Sbjct: 267 IIKDWGIERP---------ARGLSGGERALISISLAXSLAEVASGRLDAFFIDEGFSSLD 317
Query: 165 STTALRIVQMLQDIAEAGKTVVTTIHQ 191
+ +I +L+++ K +V H
Sbjct: 318 TENKEKIASVLKELERLNKVIVFITHD 344
>pdb|3H09|A Chain A, The Structure Of Haemophilus Influenzae Iga1 Protease
pdb|3H09|B Chain B, The Structure Of Haemophilus Influenzae Iga1 Protease
Length = 989
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 6/36 (16%)
Query: 182 GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 217
GKTV +H P S D+L +GKG+L+ GK
Sbjct: 412 GKTVTWKVHNPKS------DRLAKIGKGTLIVEGKG 441
>pdb|3S82|A Chain A, Structure Of A S-Adenosylmethionine Synthetase From
Mycobacterium Avium
pdb|3S82|B Chain B, Structure Of A S-Adenosylmethionine Synthetase From
Mycobacterium Avium
Length = 407
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 36 LLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRL 95
L + LS RL E G + Y K+++ +DDV TV + +AA + L
Sbjct: 160 LAHRLSRRLTEVRKNGVLPY----LRPDGKTQVTIEFEDDVPVRLDTVVISTQHAADIDL 215
Query: 96 PNTLTKQQKEKRAIDVINEL 115
NTLT +EK V+N+L
Sbjct: 216 ENTLTPDIREKVLNTVLNDL 235
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,298,785
Number of Sequences: 62578
Number of extensions: 588207
Number of successful extensions: 1802
Number of sequences better than 100.0: 114
Number of HSP's better than 100.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1524
Number of HSP's gapped (non-prelim): 164
length of query: 583
length of database: 14,973,337
effective HSP length: 104
effective length of query: 479
effective length of database: 8,465,225
effective search space: 4054842775
effective search space used: 4054842775
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)