Query 007952
Match_columns 583
No_of_seqs 403 out of 2532
Neff 7.6
Searched_HMMs 46136
Date Thu Mar 28 17:31:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007952.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007952hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03211 ABC transporter G-25; 100.0 8E-106 2E-110 905.8 65.8 552 5-578 79-658 (659)
2 KOG0061 Transporter, ABC super 100.0 1E-105 2E-110 896.2 57.2 546 6-580 42-610 (613)
3 TIGR00955 3a01204 The Eye Pigm 100.0 3E-101 7E-106 867.5 63.4 553 4-580 35-615 (617)
4 TIGR00956 3a01205 Pleiotropic 100.0 3.6E-97 8E-102 892.8 62.9 555 5-579 72-695 (1394)
5 PLN03140 ABC transporter G fam 100.0 2.6E-96 6E-101 882.5 63.2 548 5-581 891-1469(1470)
6 PLN03140 ABC transporter G fam 100.0 8.5E-96 2E-100 878.0 59.3 555 5-578 176-789 (1470)
7 TIGR00956 3a01205 Pleiotropic 100.0 2.4E-92 5.1E-97 851.0 60.4 544 5-578 774-1390(1394)
8 KOG0065 Pleiotropic drug resis 100.0 2.1E-93 4.6E-98 809.5 37.2 549 3-581 800-1386(1391)
9 KOG0065 Pleiotropic drug resis 100.0 2.7E-87 5.9E-92 759.7 46.3 554 6-578 127-730 (1391)
10 COG1126 GlnQ ABC-type polar am 100.0 2.6E-53 5.7E-58 401.1 22.1 210 2-221 10-224 (240)
11 COG1125 OpuBA ABC-type proline 100.0 1.6E-49 3.4E-54 382.5 21.3 224 3-248 10-239 (309)
12 COG1131 CcmA ABC-type multidru 100.0 2.7E-49 5.8E-54 406.3 24.3 210 6-226 17-230 (293)
13 COG1135 AbcC ABC-type metal io 100.0 1.3E-49 2.9E-54 393.9 20.8 205 6-221 18-230 (339)
14 COG1127 Ttg2A ABC-type transpo 100.0 2.6E-49 5.6E-54 379.5 20.8 210 3-222 17-235 (263)
15 COG1120 FepC ABC-type cobalami 100.0 4.9E-49 1.1E-53 389.7 19.2 210 4-221 12-227 (258)
16 COG1136 SalX ABC-type antimicr 100.0 8.7E-48 1.9E-52 373.7 23.1 194 7-211 18-220 (226)
17 COG1116 TauB ABC-type nitrate/ 100.0 8.5E-48 1.8E-52 374.1 21.5 194 4-209 13-207 (248)
18 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 9.6E-48 2.1E-52 378.6 21.9 204 8-222 18-227 (254)
19 COG4555 NatA ABC-type Na+ tran 100.0 5.3E-48 1.1E-52 360.1 17.5 204 8-222 16-222 (245)
20 COG3839 MalK ABC-type sugar tr 100.0 1.4E-47 3.1E-52 393.0 21.7 203 9-222 18-223 (338)
21 COG3842 PotA ABC-type spermidi 100.0 8.7E-48 1.9E-52 396.6 19.9 223 3-243 14-239 (352)
22 COG3638 ABC-type phosphate/pho 100.0 1.8E-47 4E-52 365.8 18.2 211 5-223 15-238 (258)
23 COG1118 CysA ABC-type sulfate/ 100.0 5E-47 1.1E-51 374.6 20.6 209 5-222 13-227 (345)
24 PRK13537 nodulation ABC transp 100.0 1.3E-45 2.8E-50 382.1 25.4 207 5-222 18-227 (306)
25 COG2884 FtsE Predicted ATPase 100.0 6.7E-46 1.5E-50 343.3 20.0 201 5-216 13-220 (223)
26 COG1117 PstB ABC-type phosphat 100.0 3.1E-46 6.7E-51 351.5 16.9 222 4-241 17-248 (253)
27 TIGR02314 ABC_MetN D-methionin 100.0 3.5E-45 7.7E-50 382.6 26.0 204 7-221 18-229 (343)
28 TIGR01188 drrA daunorubicin re 100.0 3.5E-45 7.7E-50 378.7 25.2 209 4-223 3-214 (302)
29 PRK11650 ugpC glycerol-3-phosp 100.0 3.4E-45 7.3E-50 385.5 25.4 206 5-221 15-223 (356)
30 cd03261 ABC_Org_Solvent_Resist 100.0 5.5E-45 1.2E-49 364.0 23.7 206 5-220 11-224 (235)
31 TIGR03265 PhnT2 putative 2-ami 100.0 6.5E-45 1.4E-49 383.0 25.4 207 5-222 15-224 (353)
32 COG1137 YhbG ABC-type (unclass 100.0 4.4E-46 9.6E-51 346.8 13.6 212 2-222 12-228 (243)
33 TIGR01186 proV glycine betaine 100.0 1.6E-44 3.4E-49 379.9 26.5 209 3-222 2-219 (363)
34 PRK11432 fbpC ferric transport 100.0 1.2E-44 2.6E-49 380.3 25.5 206 5-221 17-225 (351)
35 PRK13536 nodulation factor exp 100.0 1.7E-44 3.6E-49 378.0 26.0 208 5-223 52-262 (340)
36 TIGR03258 PhnT 2-aminoethylpho 100.0 1.8E-44 4E-49 380.2 25.4 206 5-221 16-227 (362)
37 PRK10851 sulfate/thiosulfate t 100.0 2.6E-44 5.5E-49 378.4 25.7 209 5-221 13-225 (353)
38 COG1124 DppF ABC-type dipeptid 100.0 1.1E-44 2.5E-49 349.1 20.7 203 8-222 21-231 (252)
39 COG3840 ThiQ ABC-type thiamine 100.0 8.5E-45 1.8E-49 333.4 17.7 199 12-221 17-218 (231)
40 COG1122 CbiO ABC-type cobalt t 100.0 3.1E-44 6.6E-49 355.0 22.4 206 7-223 17-229 (235)
41 PRK09452 potA putrescine/sperm 100.0 5.2E-44 1.1E-48 378.1 25.5 206 5-221 25-233 (375)
42 cd03265 ABC_DrrA DrrA is the A 100.0 6.4E-44 1.4E-48 352.8 24.1 204 5-219 11-218 (220)
43 COG4152 ABC-type uncharacteriz 100.0 1.7E-44 3.7E-49 345.6 19.0 212 3-225 11-222 (300)
44 cd03219 ABC_Mj1267_LivG_branch 100.0 7.2E-44 1.6E-48 356.1 24.4 208 5-220 11-230 (236)
45 TIGR01288 nodI ATP-binding ABC 100.0 9.6E-44 2.1E-48 368.1 25.5 207 5-222 15-224 (303)
46 cd03269 ABC_putative_ATPase Th 100.0 7.9E-44 1.7E-48 349.6 22.8 200 5-215 11-210 (210)
47 PRK11607 potG putrescine trans 100.0 1.1E-43 2.5E-48 376.1 25.7 207 5-222 30-239 (377)
48 PRK11153 metN DL-methionine tr 100.0 1.2E-43 2.5E-48 373.0 25.5 205 6-221 17-229 (343)
49 PRK11000 maltose/maltodextrin 100.0 1.1E-43 2.4E-48 376.2 25.6 206 5-221 14-222 (369)
50 cd03259 ABC_Carb_Solutes_like 100.0 1E-43 2.2E-48 349.6 23.4 200 5-215 11-213 (213)
51 cd03296 ABC_CysA_sulfate_impor 100.0 1.3E-43 2.8E-48 355.1 24.3 208 5-220 13-224 (239)
52 TIGR00960 3a0501s02 Type II (G 100.0 7.3E-44 1.6E-48 351.4 21.9 194 7-211 16-216 (216)
53 cd03218 ABC_YhbG The ABC trans 100.0 1.4E-43 3E-48 353.1 24.1 205 5-220 11-220 (232)
54 cd03293 ABC_NrtD_SsuB_transpor 100.0 1.7E-43 3.6E-48 349.9 24.4 200 7-218 17-219 (220)
55 cd03258 ABC_MetN_methionine_tr 100.0 1.7E-43 3.6E-48 352.8 23.8 203 8-221 19-229 (233)
56 cd03260 ABC_PstB_phosphate_tra 100.0 8.9E-44 1.9E-48 353.4 21.7 207 5-219 11-226 (227)
57 cd03256 ABC_PhnC_transporter A 100.0 1.7E-43 3.6E-48 354.5 23.7 206 7-220 14-232 (241)
58 PRK13643 cbiO cobalt transport 100.0 2.4E-43 5.3E-48 362.4 25.4 217 7-235 19-249 (288)
59 TIGR03522 GldA_ABC_ATP gliding 100.0 1.9E-43 4.2E-48 365.4 24.8 206 5-222 13-221 (301)
60 PRK13637 cbiO cobalt transport 100.0 4E-43 8.8E-48 360.6 26.5 205 7-222 20-234 (287)
61 cd03301 ABC_MalK_N The N-termi 100.0 2.3E-43 5E-48 347.0 23.2 200 5-215 11-213 (213)
62 PRK09536 btuD corrinoid ABC tr 100.0 1.5E-43 3.2E-48 376.9 23.3 209 4-220 13-226 (402)
63 cd03263 ABC_subfamily_A The AB 100.0 2.4E-43 5.1E-48 348.6 23.0 202 7-220 15-219 (220)
64 cd03295 ABC_OpuCA_Osmoprotecti 100.0 3.3E-43 7.2E-48 352.7 24.3 204 7-221 14-224 (242)
65 cd03294 ABC_Pro_Gly_Bertaine T 100.0 5.5E-43 1.2E-47 356.5 25.8 207 4-221 34-249 (269)
66 cd03266 ABC_NatA_sodium_export 100.0 3.5E-43 7.5E-48 346.9 23.3 197 8-215 19-218 (218)
67 PRK09493 glnQ glutamine ABC tr 100.0 5E-43 1.1E-47 351.0 24.4 207 5-221 12-224 (240)
68 cd03224 ABC_TM1139_LivF_branch 100.0 3.2E-43 6.9E-48 348.1 22.5 204 5-221 11-220 (222)
69 TIGR02315 ABC_phnC phosphonate 100.0 2.3E-43 5E-48 354.0 21.8 207 6-220 14-233 (243)
70 PRK11264 putative amino-acid A 100.0 6.9E-43 1.5E-47 352.1 24.5 207 5-221 14-232 (250)
71 cd03268 ABC_BcrA_bacitracin_re 100.0 3.7E-43 8.1E-48 344.3 21.8 196 5-215 11-208 (208)
72 COG0411 LivG ABC-type branched 100.0 1.4E-43 3E-48 341.9 18.3 211 4-222 14-239 (250)
73 PRK13634 cbiO cobalt transport 100.0 1.1E-42 2.3E-47 358.0 25.4 203 7-221 20-234 (290)
74 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 4.9E-43 1.1E-47 345.9 21.9 193 7-211 17-218 (218)
75 cd03234 ABCG_White The White s 100.0 1.2E-42 2.5E-47 345.3 24.5 205 6-215 19-226 (226)
76 COG4175 ProV ABC-type proline/ 100.0 1.8E-43 3.9E-48 349.6 18.5 205 7-222 41-254 (386)
77 PRK13647 cbiO cobalt transport 100.0 1.6E-42 3.4E-47 354.1 26.0 204 6-220 17-225 (274)
78 PRK10070 glycine betaine trans 100.0 1.2E-42 2.5E-47 369.7 25.9 206 5-221 39-253 (400)
79 TIGR02673 FtsE cell division A 100.0 6.9E-43 1.5E-47 343.9 22.4 194 6-210 14-214 (214)
80 PRK13650 cbiO cobalt transport 100.0 1.5E-42 3.3E-47 355.0 25.5 203 7-221 20-228 (279)
81 PRK15079 oligopeptide ABC tran 100.0 1.5E-42 3.2E-47 362.3 25.6 207 6-221 33-250 (331)
82 PRK11831 putative ABC transpor 100.0 1.3E-42 2.9E-47 353.8 24.7 207 5-221 18-232 (269)
83 PRK10895 lipopolysaccharide AB 100.0 9.1E-43 2E-47 349.3 23.0 207 5-221 14-225 (241)
84 PRK13651 cobalt transporter AT 100.0 2E-42 4.3E-47 357.8 25.6 204 7-221 20-253 (305)
85 COG0410 LivF ABC-type branched 100.0 7.1E-43 1.5E-47 334.5 20.4 208 3-222 12-226 (237)
86 PRK10619 histidine/lysine/argi 100.0 2E-42 4.3E-47 350.2 24.8 207 5-221 16-240 (257)
87 TIGR03415 ABC_choXWV_ATP choli 100.0 1.9E-42 4.1E-47 365.8 25.6 207 4-221 34-253 (382)
88 cd03292 ABC_FtsE_transporter F 100.0 1.2E-42 2.6E-47 342.1 22.5 194 7-211 14-214 (214)
89 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 2.5E-42 5.4E-47 345.1 25.1 206 5-222 12-221 (236)
90 TIGR00972 3a0107s01c2 phosphat 100.0 2E-42 4.2E-47 348.2 24.4 205 5-221 12-231 (247)
91 cd03226 ABC_cobalt_CbiO_domain 100.0 8.5E-43 1.8E-47 341.1 21.0 191 7-212 13-205 (205)
92 PRK11629 lolD lipoprotein tran 100.0 2.4E-42 5.3E-47 344.5 24.6 199 7-217 22-229 (233)
93 PRK13631 cbiO cobalt transport 100.0 3.1E-42 6.8E-47 358.4 26.1 203 7-221 39-264 (320)
94 PRK14247 phosphate ABC transpo 100.0 2.9E-42 6.2E-47 347.6 24.8 213 5-221 14-233 (250)
95 PRK11614 livF leucine/isoleuci 100.0 1.5E-42 3.3E-47 346.9 22.5 204 5-221 16-225 (237)
96 PRK13646 cbiO cobalt transport 100.0 2.4E-42 5.2E-47 354.8 24.4 204 7-222 20-235 (286)
97 PRK13641 cbiO cobalt transport 100.0 3.3E-42 7.2E-47 353.9 25.0 203 7-221 20-233 (287)
98 cd03264 ABC_drug_resistance_li 100.0 1.8E-42 3.9E-47 340.2 21.8 198 5-215 11-211 (211)
99 TIGR01978 sufC FeS assembly AT 100.0 3.8E-42 8.1E-47 345.1 24.4 211 5-221 11-233 (243)
100 COG0444 DppD ABC-type dipeptid 100.0 1.8E-42 3.9E-47 347.8 21.8 212 5-221 16-242 (316)
101 PRK10908 cell division protein 100.0 3.2E-42 6.9E-47 341.1 23.3 197 5-212 13-216 (222)
102 TIGR03005 ectoine_ehuA ectoine 100.0 3.5E-42 7.6E-47 347.4 24.1 207 5-221 11-235 (252)
103 PRK11248 tauB taurine transpor 100.0 4.5E-42 9.7E-47 347.1 24.5 202 5-218 12-216 (255)
104 cd03262 ABC_HisP_GlnQ_permease 100.0 2.5E-42 5.3E-47 339.6 21.9 197 5-211 11-213 (213)
105 PRK11124 artP arginine transpo 100.0 3.9E-42 8.4E-47 345.0 23.7 205 5-220 13-228 (242)
106 TIGR03411 urea_trans_UrtD urea 100.0 5.5E-42 1.2E-46 343.8 24.7 207 5-220 13-229 (242)
107 cd03235 ABC_Metallic_Cations A 100.0 1.8E-42 4E-47 340.7 20.8 201 5-215 10-213 (213)
108 PRK09473 oppD oligopeptide tra 100.0 5.8E-42 1.3E-46 357.9 25.5 210 6-221 28-250 (330)
109 PRK14267 phosphate ABC transpo 100.0 6E-42 1.3E-46 345.9 24.6 213 5-221 15-236 (253)
110 PRK11022 dppD dipeptide transp 100.0 8.2E-42 1.8E-46 356.4 26.3 210 7-221 20-242 (326)
111 PRK13548 hmuV hemin importer A 100.0 4.5E-42 9.8E-47 347.7 23.4 206 5-221 13-229 (258)
112 TIGR01184 ntrCD nitrate transp 100.0 4.1E-42 8.8E-47 342.3 22.6 200 10-219 1-201 (230)
113 TIGR02211 LolD_lipo_ex lipopro 100.0 4.9E-42 1.1E-46 339.5 23.1 194 7-212 18-220 (221)
114 PRK11308 dppF dipeptide transp 100.0 7.8E-42 1.7E-46 356.5 25.7 207 6-222 27-244 (327)
115 PRK13636 cbiO cobalt transport 100.0 7.2E-42 1.6E-46 350.8 25.1 206 6-222 18-231 (283)
116 PRK13638 cbiO cobalt transport 100.0 8.8E-42 1.9E-46 348.1 25.4 206 5-221 12-224 (271)
117 TIGR03740 galliderm_ABC gallid 100.0 6.1E-42 1.3E-46 339.4 23.4 200 5-219 11-210 (223)
118 TIGR02769 nickel_nikE nickel i 100.0 6.8E-42 1.5E-46 347.9 24.2 206 6-221 23-239 (265)
119 cd03225 ABC_cobalt_CbiO_domain 100.0 4.4E-42 9.4E-47 337.4 22.1 193 7-210 14-211 (211)
120 PRK13649 cbiO cobalt transport 100.0 1E-41 2.2E-46 349.3 25.7 203 7-221 20-233 (280)
121 PRK14273 phosphate ABC transpo 100.0 7.6E-42 1.6E-46 345.4 23.9 207 5-221 18-237 (254)
122 PRK13635 cbiO cobalt transport 100.0 1.1E-41 2.4E-46 348.6 25.4 205 6-222 19-229 (279)
123 PRK11300 livG leucine/isoleuci 100.0 8.9E-42 1.9E-46 345.0 24.4 209 5-221 16-242 (255)
124 cd03257 ABC_NikE_OppD_transpor 100.0 6.8E-42 1.5E-46 339.8 23.1 198 8-215 19-228 (228)
125 PRK13652 cbiO cobalt transport 100.0 8.8E-42 1.9E-46 349.1 24.6 205 6-221 16-226 (277)
126 PRK14268 phosphate ABC transpo 100.0 1.1E-41 2.3E-46 345.1 25.0 209 5-220 23-240 (258)
127 PRK13644 cbiO cobalt transport 100.0 8E-42 1.7E-46 348.8 23.8 204 6-221 14-223 (274)
128 PRK11231 fecE iron-dicitrate t 100.0 4.9E-42 1.1E-46 347.0 21.9 209 5-221 13-226 (255)
129 PRK11247 ssuB aliphatic sulfon 100.0 5.4E-42 1.2E-46 346.5 22.1 196 5-218 23-219 (257)
130 cd03267 ABC_NatA_like Similar 100.0 1.1E-41 2.3E-46 340.6 24.0 201 4-215 31-236 (236)
131 PRK15093 antimicrobial peptide 100.0 1.4E-41 3E-46 355.6 25.8 214 5-221 18-247 (330)
132 PRK14245 phosphate ABC transpo 100.0 1.3E-41 2.8E-46 342.8 24.5 211 5-221 14-233 (250)
133 TIGR02142 modC_ABC molybdenum 100.0 1E-41 2.2E-46 360.0 24.7 198 12-222 15-221 (354)
134 PRK14242 phosphate transporter 100.0 1.3E-41 2.8E-46 343.5 24.1 210 5-220 17-235 (253)
135 TIGR01257 rim_protein retinal- 100.0 3.5E-39 7.7E-44 391.0 49.6 208 6-225 942-1152(2272)
136 TIGR03873 F420-0_ABC_ATP propo 100.0 9.1E-42 2E-46 345.2 22.9 208 5-220 12-224 (256)
137 PRK13639 cbiO cobalt transport 100.0 2.2E-41 4.7E-46 345.9 25.8 205 6-221 14-225 (275)
138 PRK13632 cbiO cobalt transport 100.0 1.1E-41 2.4E-46 347.3 23.5 204 6-221 21-230 (271)
139 PRK14269 phosphate ABC transpo 100.0 1.6E-41 3.4E-46 341.5 23.9 212 5-221 13-229 (246)
140 PRK14235 phosphate transporter 100.0 1.6E-41 3.5E-46 345.5 24.2 212 5-221 30-250 (267)
141 PRK10253 iron-enterobactin tra 100.0 8.6E-42 1.9E-46 347.1 22.0 209 5-221 18-232 (265)
142 PRK13633 cobalt transporter AT 100.0 2.1E-41 4.6E-46 346.8 24.9 205 6-222 22-233 (280)
143 PRK11144 modC molybdate transp 100.0 1.3E-41 2.8E-46 358.7 23.8 193 12-221 16-217 (352)
144 PRK13648 cbiO cobalt transport 100.0 2.8E-41 6.1E-46 344.1 25.5 203 7-221 22-230 (269)
145 PRK09984 phosphonate/organopho 100.0 1.3E-41 2.8E-46 345.3 22.9 210 5-220 15-240 (262)
146 PRK10575 iron-hydroxamate tran 100.0 1E-41 2.2E-46 346.5 22.2 208 5-220 22-235 (265)
147 TIGR00968 3a0106s01 sulfate AB 100.0 2E-41 4.4E-46 338.8 23.9 206 5-221 11-219 (237)
148 TIGR03410 urea_trans_UrtE urea 100.0 1.4E-41 3.1E-46 338.3 22.6 202 5-220 11-219 (230)
149 COG4559 ABC-type hemin transpo 100.0 4.9E-42 1.1E-46 322.5 17.9 208 4-222 11-230 (259)
150 PRK13640 cbiO cobalt transport 100.0 3.5E-41 7.5E-46 345.5 25.1 204 7-222 20-232 (282)
151 PRK10744 pstB phosphate transp 100.0 2.8E-41 6E-46 342.4 24.0 211 5-221 24-243 (260)
152 PRK14274 phosphate ABC transpo 100.0 3.1E-41 6.7E-46 341.9 24.2 211 5-221 23-242 (259)
153 PRK14244 phosphate ABC transpo 100.0 2.7E-41 5.9E-46 340.7 23.6 212 5-221 16-236 (251)
154 PRK14256 phosphate ABC transpo 100.0 4.5E-41 9.8E-46 339.3 25.1 211 6-221 16-235 (252)
155 TIGR02770 nickel_nikD nickel i 100.0 3.5E-41 7.7E-46 335.5 24.0 203 9-221 1-214 (230)
156 cd03300 ABC_PotA_N PotA is an 100.0 4.8E-41 1E-45 335.0 24.9 206 5-221 11-219 (232)
157 PRK15112 antimicrobial peptide 100.0 3.8E-41 8.3E-46 342.7 24.5 206 6-221 25-238 (267)
158 cd03298 ABC_ThiQ_thiamine_tran 100.0 2.3E-41 5E-46 332.3 22.1 194 11-215 15-211 (211)
159 PRK14241 phosphate transporter 100.0 4.7E-41 1E-45 340.4 25.0 212 5-221 15-241 (258)
160 PRK13645 cbiO cobalt transport 100.0 3.2E-41 7E-46 347.1 23.9 202 8-221 25-239 (289)
161 cd03297 ABC_ModC_molybdenum_tr 100.0 3.7E-41 8E-46 331.7 23.2 196 4-215 10-214 (214)
162 PRK14239 phosphate transporter 100.0 5.7E-41 1.2E-45 338.5 24.9 211 5-221 16-235 (252)
163 PRK10584 putative ABC transpor 100.0 4.8E-41 1E-45 334.0 23.9 195 8-214 24-227 (228)
164 PRK13549 xylose transporter AT 100.0 2.1E-41 4.5E-46 374.6 23.6 210 5-220 16-230 (506)
165 PRK14250 phosphate ABC transpo 100.0 3.1E-41 6.7E-46 338.3 22.5 201 5-221 14-220 (241)
166 PRK10771 thiQ thiamine transpo 100.0 3.6E-41 7.7E-46 335.9 22.7 200 11-221 16-218 (232)
167 cd03299 ABC_ModC_like Archeal 100.0 6.5E-41 1.4E-45 334.7 24.5 203 8-221 13-218 (235)
168 TIGR01277 thiQ thiamine ABC tr 100.0 5.9E-41 1.3E-45 330.0 23.8 197 9-216 13-212 (213)
169 PRK14237 phosphate transporter 100.0 6.3E-41 1.4E-45 341.1 24.6 211 5-221 31-250 (267)
170 PRK13642 cbiO cobalt transport 100.0 7.6E-41 1.6E-45 342.2 25.0 203 7-221 20-228 (277)
171 PRK14240 phosphate transporter 100.0 8.5E-41 1.8E-45 336.9 24.7 211 5-221 14-233 (250)
172 PRK14272 phosphate ABC transpo 100.0 8E-41 1.7E-45 337.4 24.5 212 5-221 15-235 (252)
173 PRK14270 phosphate ABC transpo 100.0 7.6E-41 1.6E-45 337.5 24.3 211 5-221 15-234 (251)
174 PRK14262 phosphate ABC transpo 100.0 7.4E-41 1.6E-45 337.3 24.1 211 5-221 14-233 (250)
175 cd03232 ABC_PDR_domain2 The pl 100.0 5.6E-41 1.2E-45 324.9 21.4 172 7-215 20-192 (192)
176 PRK13547 hmuV hemin importer A 100.0 6.8E-41 1.5E-45 341.2 22.0 208 5-220 12-242 (272)
177 PRK14253 phosphate ABC transpo 100.0 1.4E-40 3.1E-45 335.0 24.2 210 5-220 14-231 (249)
178 PRK10762 D-ribose transporter 100.0 6.3E-41 1.4E-45 370.3 23.6 208 5-220 15-228 (501)
179 PRK11701 phnK phosphonate C-P 100.0 2E-40 4.4E-45 335.7 25.3 207 5-221 17-240 (258)
180 COG4525 TauB ABC-type taurine 100.0 8E-41 1.7E-45 310.3 20.1 205 7-223 18-225 (259)
181 TIGR03608 L_ocin_972_ABC putat 100.0 1E-40 2.3E-45 326.3 22.1 190 5-206 9-206 (206)
182 PRK14259 phosphate ABC transpo 100.0 1.1E-40 2.3E-45 339.7 22.9 210 5-222 24-253 (269)
183 COG1123 ATPase components of v 100.0 1.2E-40 2.5E-45 357.3 24.2 212 7-224 22-246 (539)
184 PRK09700 D-allose transporter 100.0 7.2E-41 1.6E-45 370.7 23.3 208 5-220 16-232 (510)
185 PRK14236 phosphate transporter 100.0 1.8E-40 3.9E-45 338.6 24.2 211 5-221 36-255 (272)
186 COG4181 Predicted ABC-type tra 100.0 6.4E-41 1.4E-45 304.8 18.2 197 5-213 21-226 (228)
187 PRK14248 phosphate ABC transpo 100.0 2.2E-40 4.7E-45 337.3 24.0 211 5-221 32-251 (268)
188 PRK03695 vitamin B12-transport 100.0 2.4E-40 5.1E-45 333.3 23.8 200 8-220 10-220 (248)
189 PRK14249 phosphate ABC transpo 100.0 3.2E-40 7E-45 332.9 24.7 210 5-221 15-234 (251)
190 PRK14251 phosphate ABC transpo 100.0 2.6E-40 5.6E-45 333.6 23.9 211 5-221 15-234 (251)
191 cd03233 ABC_PDR_domain1 The pl 100.0 1.9E-40 4.2E-45 323.7 22.2 180 5-215 18-202 (202)
192 cd03252 ABCC_Hemolysin The ABC 100.0 5.1E-41 1.1E-45 335.8 18.5 201 6-222 14-225 (237)
193 TIGR02982 heterocyst_DevA ABC 100.0 2E-40 4.4E-45 327.8 22.3 194 7-211 18-219 (220)
194 PRK14271 phosphate ABC transpo 100.0 3.8E-40 8.3E-45 336.7 24.9 211 5-221 32-250 (276)
195 PRK14260 phosphate ABC transpo 100.0 2.8E-40 6E-45 334.9 23.6 211 5-221 18-242 (259)
196 PRK14261 phosphate ABC transpo 100.0 3.9E-40 8.4E-45 332.7 24.4 211 5-221 17-236 (253)
197 PRK14257 phosphate ABC transpo 100.0 3.5E-40 7.5E-45 344.2 24.7 209 6-221 94-312 (329)
198 PRK14255 phosphate ABC transpo 100.0 4.8E-40 1E-44 331.8 24.9 211 5-221 16-235 (252)
199 PRK14275 phosphate ABC transpo 100.0 3.4E-40 7.3E-45 338.8 23.9 210 6-221 51-269 (286)
200 PRK14263 phosphate ABC transpo 100.0 3.8E-40 8.3E-45 334.1 23.9 209 5-221 19-244 (261)
201 COG4598 HisP ABC-type histidin 100.0 3.5E-41 7.6E-46 308.6 14.6 209 3-221 15-240 (256)
202 PRK10419 nikE nickel transport 100.0 3.4E-40 7.4E-45 335.8 23.3 206 6-221 24-240 (268)
203 COG4988 CydD ABC-type transpor 100.0 7.1E-41 1.5E-45 357.6 18.9 203 4-222 331-543 (559)
204 PRK11174 cysteine/glutathione 100.0 7.1E-41 1.5E-45 377.1 19.9 201 5-222 361-572 (588)
205 CHL00131 ycf16 sulfate ABC tra 100.0 7E-40 1.5E-44 330.6 24.9 210 5-220 18-239 (252)
206 PRK14238 phosphate transporter 100.0 4.8E-40 1E-44 335.3 23.9 210 5-220 35-253 (271)
207 KOG0058 Peptide exporter, ABC 100.0 3.3E-41 7.1E-46 366.4 16.2 205 4-222 478-691 (716)
208 PRK15439 autoinducer 2 ABC tra 100.0 2.9E-40 6.3E-45 365.5 24.0 201 5-220 22-227 (510)
209 PRK10982 galactose/methyl gala 100.0 3.2E-40 6.9E-45 363.9 24.1 208 5-220 9-221 (491)
210 PRK14258 phosphate ABC transpo 100.0 7.8E-40 1.7E-44 332.0 25.0 210 6-221 19-244 (261)
211 COG2274 SunT ABC-type bacterio 100.0 4.7E-41 1E-45 377.8 17.2 203 7-223 486-697 (709)
212 TIGR02633 xylG D-xylose ABC tr 100.0 4.6E-40 9.9E-45 363.5 24.6 210 5-219 12-227 (500)
213 PRK10418 nikD nickel transport 100.0 8.2E-40 1.8E-44 330.5 24.3 205 6-221 15-229 (254)
214 COG4604 CeuD ABC-type enteroch 100.0 2E-41 4.3E-46 314.9 11.4 209 3-222 10-225 (252)
215 PRK09580 sufC cysteine desulfu 100.0 1.1E-39 2.3E-44 328.4 24.9 217 5-228 12-240 (248)
216 cd03251 ABCC_MsbA MsbA is an e 100.0 1.3E-40 2.8E-45 332.2 18.1 200 7-222 15-225 (234)
217 PRK14254 phosphate ABC transpo 100.0 7.7E-40 1.7E-44 335.9 24.3 209 5-221 50-268 (285)
218 cd03213 ABCG_EPDR ABCG transpo 100.0 5.3E-40 1.2E-44 318.6 21.8 173 6-215 21-194 (194)
219 TIGR02323 CP_lyasePhnK phospho 100.0 9.7E-40 2.1E-44 329.8 24.6 207 5-221 14-237 (253)
220 PRK14266 phosphate ABC transpo 100.0 8.3E-40 1.8E-44 329.7 23.9 211 5-221 14-233 (250)
221 PRK10261 glutathione transport 100.0 7.4E-40 1.6E-44 369.8 25.9 205 7-221 337-552 (623)
222 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 1.4E-40 3.1E-45 332.7 17.6 201 7-223 16-227 (238)
223 PRK14265 phosphate ABC transpo 100.0 1E-39 2.3E-44 333.2 23.9 209 5-221 31-257 (274)
224 COG1123 ATPase components of v 100.0 6E-40 1.3E-44 351.9 22.9 208 5-221 302-518 (539)
225 TIGR01166 cbiO cobalt transpor 100.0 6.6E-40 1.4E-44 316.8 20.9 178 5-193 3-188 (190)
226 PRK15056 manganese/iron transp 100.0 7.6E-40 1.6E-44 334.0 22.0 206 6-220 19-228 (272)
227 PRK14243 phosphate transporter 100.0 8.6E-40 1.9E-44 332.2 22.3 209 5-221 21-247 (264)
228 PRK14246 phosphate ABC transpo 100.0 2.1E-39 4.7E-44 327.9 24.9 211 4-221 20-240 (257)
229 PRK11288 araG L-arabinose tran 100.0 8.2E-40 1.8E-44 361.4 23.7 205 5-217 15-224 (501)
230 TIGR01257 rim_protein retinal- 100.0 8.3E-40 1.8E-44 396.5 25.6 208 7-225 1952-2162(2272)
231 PRK15134 microcin C ABC transp 100.0 1.1E-39 2.3E-44 362.8 24.4 206 6-221 298-514 (529)
232 TIGR03269 met_CoM_red_A2 methy 100.0 1.5E-39 3.2E-44 361.0 25.1 211 5-224 11-260 (520)
233 cd03254 ABCC_Glucan_exporter_l 100.0 2.8E-40 6.2E-45 328.6 17.4 201 7-222 16-226 (229)
234 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 2.2E-39 4.8E-44 321.3 23.5 192 5-215 33-224 (224)
235 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 4.5E-40 9.7E-45 376.7 20.8 198 6-222 465-673 (686)
236 cd03245 ABCC_bacteriocin_expor 100.0 4.8E-40 1E-44 325.0 18.1 194 7-215 17-220 (220)
237 PRK11176 lipid transporter ATP 100.0 4.1E-40 8.8E-45 370.6 19.9 202 6-222 355-567 (582)
238 KOG0057 Mitochondrial Fe/S clu 100.0 3.2E-40 7E-45 347.4 17.6 200 6-222 364-574 (591)
239 PRK14264 phosphate ABC transpo 100.0 2.5E-39 5.3E-44 335.3 24.0 213 5-221 56-288 (305)
240 PRK10247 putative ABC transpor 100.0 1.1E-39 2.4E-44 323.8 20.0 198 5-217 18-222 (225)
241 PRK13549 xylose transporter AT 100.0 1.6E-39 3.5E-44 359.5 23.5 208 6-220 274-492 (506)
242 TIGR03771 anch_rpt_ABC anchore 100.0 2.4E-39 5.2E-44 320.9 22.0 197 15-221 1-200 (223)
243 PRK15134 microcin C ABC transp 100.0 3.1E-39 6.7E-44 359.1 24.8 207 7-221 22-245 (529)
244 PRK10261 glutathione transport 100.0 2.1E-39 4.6E-44 366.1 23.7 209 6-221 28-257 (623)
245 PRK13538 cytochrome c biogenes 100.0 2.5E-39 5.5E-44 316.3 21.1 188 5-206 12-202 (204)
246 cd03231 ABC_CcmA_heme_exporter 100.0 2.3E-39 4.9E-44 316.0 20.6 185 5-206 11-198 (201)
247 cd03217 ABC_FeS_Assembly ABC-t 100.0 2.3E-39 5E-44 315.6 20.7 180 5-225 11-196 (200)
248 COG4148 ModC ABC-type molybdat 100.0 2.5E-40 5.4E-45 322.3 13.7 194 12-222 16-218 (352)
249 TIGR03269 met_CoM_red_A2 methy 100.0 4.7E-39 1E-43 357.1 25.7 205 6-222 296-517 (520)
250 PRK10790 putative multidrug tr 100.0 1.8E-39 3.9E-44 365.9 22.6 200 6-222 353-563 (592)
251 cd03253 ABCC_ATM1_transporter 100.0 1.1E-39 2.4E-44 325.8 18.4 200 6-221 13-223 (236)
252 PRK14252 phosphate ABC transpo 100.0 7.4E-39 1.6E-43 325.6 24.6 211 5-221 27-248 (265)
253 PRK09700 D-allose transporter 100.0 2.3E-39 5E-44 358.7 22.5 202 8-217 277-493 (510)
254 PRK13543 cytochrome c biogenes 100.0 3.9E-39 8.4E-44 317.4 21.5 190 5-208 22-212 (214)
255 cd03289 ABCC_CFTR2 The CFTR su 100.0 2.1E-39 4.5E-44 330.1 20.1 200 6-222 16-225 (275)
256 COG1132 MdlB ABC-type multidru 100.0 7.4E-40 1.6E-44 367.2 18.3 203 6-222 341-552 (567)
257 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 9.2E-40 2E-44 375.6 19.3 199 6-222 491-700 (710)
258 PRK11160 cysteine/glutathione 100.0 1.4E-39 3.1E-44 364.9 20.3 200 7-222 353-562 (574)
259 PRK13546 teichoic acids export 100.0 2E-38 4.2E-43 321.6 26.6 198 5-222 35-232 (264)
260 cd03230 ABC_DR_subfamily_A Thi 100.0 3.8E-39 8.2E-44 307.0 19.9 159 6-211 12-173 (173)
261 COG4161 ArtP ABC-type arginine 100.0 2.5E-39 5.4E-44 291.6 16.9 206 4-219 12-227 (242)
262 PRK10762 D-ribose transporter 100.0 4.1E-39 8.9E-44 355.9 22.4 205 8-220 266-482 (501)
263 PRK09544 znuC high-affinity zi 100.0 6E-39 1.3E-43 323.3 21.2 191 5-221 15-208 (251)
264 TIGR02633 xylG D-xylose ABC tr 100.0 7.1E-39 1.5E-43 354.0 23.0 206 6-218 272-488 (500)
265 COG4987 CydC ABC-type transpor 100.0 7E-40 1.5E-44 344.7 14.0 201 6-222 350-561 (573)
266 TIGR00958 3a01208 Conjugate Tr 100.0 2.1E-39 4.6E-44 371.6 19.0 199 6-222 493-702 (711)
267 TIGR03375 type_I_sec_LssB type 100.0 2.4E-39 5.2E-44 371.1 19.4 202 6-223 477-689 (694)
268 TIGR01189 ccmA heme ABC export 100.0 9.5E-39 2.1E-43 310.8 20.6 184 5-205 11-197 (198)
269 cd03244 ABCC_MRP_domain2 Domai 100.0 4.5E-39 9.6E-44 318.3 18.5 194 6-216 16-220 (221)
270 KOG0055 Multidrug/pheromone ex 100.0 1.3E-39 2.7E-44 372.0 16.5 206 3-222 362-576 (1228)
271 PRK11288 araG L-arabinose tran 100.0 6.3E-39 1.4E-43 354.4 21.6 205 8-220 267-483 (501)
272 TIGR02324 CP_lyasePhnL phospho 100.0 2.1E-38 4.5E-43 314.2 23.0 190 7-207 21-223 (224)
273 COG1129 MglA ABC-type sugar tr 100.0 1.1E-38 2.4E-43 340.1 22.1 207 3-217 17-229 (500)
274 cd03215 ABC_Carb_Monos_II This 100.0 1.1E-38 2.5E-43 306.2 20.1 160 9-211 15-182 (182)
275 TIGR01187 potA spermidine/putr 100.0 1.5E-38 3.2E-43 332.1 22.7 186 25-221 1-189 (325)
276 TIGR01842 type_I_sec_PrtD type 100.0 4.6E-39 1E-43 359.0 20.1 204 6-222 330-542 (544)
277 cd03229 ABC_Class3 This class 100.0 6.9E-39 1.5E-43 306.6 18.2 161 5-210 11-178 (178)
278 TIGR01193 bacteriocin_ABC ABC- 100.0 2.9E-39 6.2E-44 371.3 18.6 201 6-222 486-697 (708)
279 cd03248 ABCC_TAP TAP, the Tran 100.0 2.4E-39 5.3E-44 321.3 15.5 191 7-211 27-226 (226)
280 PRK15439 autoinducer 2 ABC tra 100.0 1.2E-38 2.5E-43 352.8 22.4 205 8-220 277-490 (510)
281 PRK13657 cyclic beta-1,2-gluca 100.0 8E-39 1.7E-43 360.3 20.6 201 6-222 347-558 (588)
282 PRK13540 cytochrome c biogenes 100.0 2.1E-38 4.5E-43 308.9 19.8 183 5-204 12-197 (200)
283 PRK13539 cytochrome c biogenes 100.0 3E-38 6.6E-43 309.4 21.1 187 5-208 13-200 (207)
284 TIGR02203 MsbA_lipidA lipid A 100.0 8.4E-39 1.8E-43 359.2 19.5 201 6-221 344-555 (571)
285 PRK10938 putative molybdenum t 100.0 1.1E-38 2.5E-43 351.6 20.1 198 5-221 14-223 (490)
286 PRK13545 tagH teichoic acids e 100.0 6E-38 1.3E-42 337.7 25.1 198 7-224 37-234 (549)
287 COG0396 sufC Cysteine desulfur 100.0 6.4E-38 1.4E-42 299.1 22.1 218 7-231 17-242 (251)
288 cd03246 ABCC_Protease_Secretio 100.0 1.6E-38 3.6E-43 302.6 18.2 155 7-211 15-173 (173)
289 cd03288 ABCC_SUR2 The SUR doma 100.0 2.4E-38 5.2E-43 320.4 19.4 199 7-222 34-243 (257)
290 cd03247 ABCC_cytochrome_bd The 100.0 1.9E-38 4.2E-43 303.5 17.7 161 7-215 15-178 (178)
291 COG4619 ABC-type uncharacteriz 100.0 6.7E-39 1.5E-43 290.7 12.9 194 5-211 14-212 (223)
292 cd03369 ABCC_NFT1 Domain 2 of 100.0 3.8E-38 8.2E-43 308.6 19.3 183 7-217 21-207 (207)
293 TIGR01846 type_I_sec_HlyB type 100.0 1.7E-38 3.7E-43 364.0 19.5 201 6-222 469-680 (694)
294 COG4172 ABC-type uncharacteriz 100.0 6.9E-38 1.5E-42 318.2 21.0 207 6-221 299-515 (534)
295 PRK10789 putative multidrug tr 100.0 2.6E-38 5.6E-43 354.6 19.6 201 6-222 327-538 (569)
296 cd03290 ABCC_SUR1_N The SUR do 100.0 8.2E-38 1.8E-42 308.7 20.4 189 6-210 13-218 (218)
297 cd03214 ABC_Iron-Siderophores_ 100.0 3E-38 6.5E-43 302.7 16.3 165 6-215 11-180 (180)
298 TIGR02204 MsbA_rel ABC transpo 100.0 3.3E-38 7.2E-43 354.7 19.3 199 7-221 353-562 (576)
299 PRK15177 Vi polysaccharide exp 100.0 1.6E-37 3.5E-42 305.6 20.6 195 8-226 1-196 (213)
300 COG4618 ArpD ABC-type protease 100.0 4.1E-38 8.8E-43 328.5 16.9 210 3-225 345-563 (580)
301 KOG0055 Multidrug/pheromone ex 100.0 7.3E-38 1.6E-42 357.6 19.7 206 3-222 999-1213(1228)
302 TIGR01192 chvA glucan exporter 100.0 9.6E-38 2.1E-42 350.8 19.9 200 7-222 348-558 (585)
303 COG3845 ABC-type uncharacteriz 100.0 1.8E-37 3.9E-42 324.4 20.4 204 5-216 15-223 (501)
304 cd03250 ABCC_MRP_domain1 Domai 100.0 2E-37 4.2E-42 302.9 18.5 179 7-210 18-204 (204)
305 cd03237 ABC_RNaseL_inhibitor_d 100.0 1.1E-36 2.5E-41 305.7 24.0 192 5-219 5-204 (246)
306 PTZ00265 multidrug resistance 100.0 7.1E-38 1.5E-42 379.1 17.4 203 6-222 1180-1452(1466)
307 cd03228 ABCC_MRP_Like The MRP 100.0 2.8E-37 6.1E-42 293.5 17.5 152 8-210 16-171 (171)
308 cd03291 ABCC_CFTR1 The CFTR su 100.0 9.6E-37 2.1E-41 311.7 22.3 190 6-221 49-246 (282)
309 PRK13541 cytochrome c biogenes 100.0 6.7E-37 1.5E-41 297.1 20.0 180 6-203 13-192 (195)
310 PRK10535 macrolide transporter 100.0 1.9E-36 4.2E-41 343.2 25.4 203 7-221 21-231 (648)
311 PRK10982 galactose/methyl gala 100.0 9.9E-37 2.1E-41 336.2 22.3 204 7-218 261-476 (491)
312 cd03216 ABC_Carb_Monos_I This 100.0 1.1E-36 2.4E-41 287.1 19.3 147 5-213 11-162 (163)
313 cd03223 ABCD_peroxisomal_ALDP 100.0 2E-36 4.4E-41 286.2 19.6 152 6-210 13-164 (166)
314 COG4586 ABC-type uncharacteriz 100.0 4.4E-37 9.6E-42 299.1 15.3 207 8-225 38-249 (325)
315 COG1119 ModF ABC-type molybden 100.0 3.2E-37 6.9E-42 297.8 14.1 205 4-216 41-256 (257)
316 PLN03232 ABC transporter C fam 100.0 5E-37 1.1E-41 374.6 19.5 200 6-222 1248-1458(1495)
317 PRK15064 ABC transporter ATP-b 100.0 3.2E-36 6.9E-41 335.0 24.1 201 5-222 12-242 (530)
318 PLN03130 ABC transporter C fam 100.0 7.1E-37 1.5E-41 373.6 20.1 199 7-222 1252-1461(1622)
319 TIGR02868 CydC thiol reductant 100.0 4.1E-37 9E-42 342.4 16.0 173 6-192 347-529 (529)
320 PRK11819 putative ABC transpor 100.0 4.9E-36 1.1E-40 335.0 22.7 197 6-221 19-249 (556)
321 TIGR02857 CydD thiol reductant 100.0 9.6E-37 2.1E-41 339.4 17.0 184 7-206 335-529 (529)
322 COG4172 ABC-type uncharacteriz 100.0 5.2E-36 1.1E-40 304.5 19.8 213 4-221 20-246 (534)
323 PRK10938 putative molybdenum t 100.0 3.5E-36 7.5E-41 331.8 20.2 204 5-216 271-486 (490)
324 PRK10522 multidrug transporter 100.0 4.2E-36 9.1E-41 335.3 20.3 189 6-214 335-530 (547)
325 COG4608 AppF ABC-type oligopep 100.0 6.4E-36 1.4E-40 294.7 18.4 173 7-222 26-199 (268)
326 PRK15064 ABC transporter ATP-b 100.0 7.8E-36 1.7E-40 332.0 21.4 191 5-221 330-524 (530)
327 PTZ00243 ABC transporter; Prov 100.0 5.3E-36 1.2E-40 365.4 21.1 199 7-222 1323-1533(1560)
328 TIGR00957 MRP_assoc_pro multi 100.0 5.5E-36 1.2E-40 366.0 21.0 199 7-222 1299-1508(1522)
329 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 1.4E-35 3E-40 331.3 22.3 198 6-222 17-248 (552)
330 PTZ00265 multidrug resistance 100.0 9.2E-36 2E-40 360.8 21.5 197 7-209 398-655 (1466)
331 TIGR01194 cyc_pep_trnsptr cycl 100.0 1.1E-35 2.3E-40 332.4 19.9 191 7-214 355-551 (555)
332 cd03238 ABC_UvrA The excision 100.0 2.9E-35 6.3E-40 279.8 19.8 161 3-212 4-167 (176)
333 COG4674 Uncharacterized ABC-ty 100.0 5.1E-36 1.1E-40 278.4 13.6 209 4-221 15-234 (249)
334 KOG0056 Heavy metal exporter H 100.0 2.7E-36 5.9E-41 311.5 12.7 207 4-222 548-761 (790)
335 cd03236 ABC_RNaseL_inhibitor_d 100.0 2.1E-35 4.6E-40 297.8 19.0 189 8-215 15-220 (255)
336 TIGR01271 CFTR_protein cystic 100.0 3.7E-35 7.9E-40 357.8 22.0 199 6-222 1231-1440(1490)
337 COG1134 TagH ABC-type polysacc 100.0 1.3E-34 2.8E-39 280.1 21.2 203 5-227 38-241 (249)
338 PRK11819 putative ABC transpor 100.0 7.8E-35 1.7E-39 325.4 22.3 192 5-219 335-530 (556)
339 COG1101 PhnK ABC-type uncharac 100.0 3.3E-35 7.2E-40 277.1 16.2 203 5-215 17-231 (263)
340 PRK13409 putative ATPase RIL; 100.0 1.3E-34 2.8E-39 323.5 21.8 183 9-217 354-537 (590)
341 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 1.7E-34 3.6E-39 322.6 22.7 192 5-219 333-528 (552)
342 KOG0059 Lipid exporter ABCA1 a 100.0 5.4E-35 1.2E-39 340.4 18.7 207 9-226 580-791 (885)
343 PRK10636 putative ABC transpor 100.0 3.5E-34 7.6E-39 324.0 22.1 191 5-222 323-517 (638)
344 cd03222 ABC_RNaseL_inhibitor T 100.0 3.2E-34 6.9E-39 272.9 17.8 147 4-218 10-159 (177)
345 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 8.4E-34 1.8E-38 262.0 17.5 133 6-210 12-144 (144)
346 PLN03232 ABC transporter C fam 100.0 6.4E-34 1.4E-38 347.4 21.7 192 6-222 629-828 (1495)
347 PRK11147 ABC transporter ATPas 100.0 1.3E-33 2.9E-38 319.8 21.2 193 5-220 330-526 (635)
348 PLN03130 ABC transporter C fam 100.0 8.1E-34 1.8E-38 346.9 20.7 191 6-222 629-828 (1622)
349 PRK10636 putative ABC transpor 100.0 1.9E-33 4.1E-38 318.1 21.5 198 4-220 11-234 (638)
350 COG4167 SapF ABC-type antimicr 100.0 3.4E-33 7.5E-38 256.7 19.0 206 6-221 25-238 (267)
351 TIGR00954 3a01203 Peroxysomal 100.0 1E-33 2.3E-38 321.3 19.0 186 6-208 464-653 (659)
352 COG4136 ABC-type uncharacteriz 100.0 7.9E-34 1.7E-38 253.2 14.0 180 5-193 13-196 (213)
353 COG5265 ATM1 ABC-type transpor 100.0 1.8E-34 3.9E-39 295.3 11.2 206 4-223 273-487 (497)
354 PLN03073 ABC transporter F fam 100.0 4.8E-33 1E-37 316.3 23.7 192 6-222 521-714 (718)
355 COG4133 CcmA ABC-type transpor 100.0 3.9E-33 8.4E-38 258.6 16.5 178 4-194 12-192 (209)
356 PRK11147 ABC transporter ATPas 100.0 1E-32 2.2E-37 312.6 22.0 197 4-221 13-242 (635)
357 PRK13409 putative ATPase RIL; 100.0 5.1E-33 1.1E-37 310.7 18.7 181 7-209 87-287 (590)
358 cd00267 ABC_ATPase ABC (ATP-bi 100.0 1.1E-32 2.4E-37 258.2 18.0 143 6-210 11-157 (157)
359 TIGR01271 CFTR_protein cystic 100.0 2.3E-32 4.9E-37 333.4 23.9 192 7-222 439-636 (1490)
360 TIGR00957 MRP_assoc_pro multi 100.0 1.4E-32 3.1E-37 336.1 21.9 195 7-222 651-850 (1522)
361 PTZ00243 ABC transporter; Prov 100.0 3.9E-32 8.4E-37 331.7 21.4 192 6-222 672-870 (1560)
362 COG4107 PhnK ABC-type phosphon 100.0 5E-32 1.1E-36 247.2 15.2 207 3-222 15-241 (258)
363 cd03270 ABC_UvrA_I The excisio 100.0 5.2E-31 1.1E-35 261.6 20.2 192 4-215 5-226 (226)
364 COG0488 Uup ATPase components 100.0 1.9E-31 4E-36 291.5 18.2 197 4-219 13-237 (530)
365 cd03271 ABC_UvrA_II The excisi 100.0 1.5E-30 3.3E-35 261.8 20.4 196 6-217 7-261 (261)
366 KOG0054 Multidrug resistance-a 100.0 7.5E-31 1.6E-35 306.8 20.0 192 6-222 533-731 (1381)
367 PLN03073 ABC transporter F fam 100.0 3.6E-31 7.9E-36 301.0 15.4 202 5-220 188-429 (718)
368 PF00005 ABC_tran: ABC transpo 100.0 3.9E-31 8.4E-36 241.5 12.1 133 10-161 1-137 (137)
369 COG4778 PhnL ABC-type phosphon 100.0 6.1E-31 1.3E-35 239.3 12.8 192 7-208 24-227 (235)
370 KOG0054 Multidrug resistance-a 100.0 2.2E-30 4.7E-35 303.0 17.3 200 6-222 1152-1362(1381)
371 COG1129 MglA ABC-type sugar tr 100.0 7.8E-29 1.7E-33 264.7 20.8 203 9-218 274-486 (500)
372 COG4138 BtuD ABC-type cobalami 100.0 2.4E-30 5.2E-35 236.5 5.6 197 8-221 13-220 (248)
373 cd03278 ABC_SMC_barmotin Barmo 100.0 4.8E-29 1E-33 242.2 13.2 165 11-208 14-190 (197)
374 COG0488 Uup ATPase components 100.0 1.3E-27 2.8E-32 261.3 20.1 190 6-222 334-525 (530)
375 cd03272 ABC_SMC3_euk Eukaryoti 99.9 1E-27 2.2E-32 240.6 14.0 189 3-207 11-234 (243)
376 cd03274 ABC_SMC4_euk Eukaryoti 99.9 5.1E-29 1.1E-33 244.7 2.3 181 3-208 13-204 (212)
377 cd03273 ABC_SMC2_euk Eukaryoti 99.9 1.6E-27 3.5E-32 240.4 9.1 186 16-207 22-242 (251)
378 PRK00635 excinuclease ABC subu 99.9 1.1E-25 2.3E-30 270.2 23.1 138 77-222 759-906 (1809)
379 cd03240 ABC_Rad50 The catalyti 99.9 2.2E-26 4.7E-31 224.9 13.1 166 11-208 14-197 (204)
380 cd03279 ABC_sbcCD SbcCD and ot 99.9 7.1E-26 1.5E-30 222.9 15.0 179 11-210 18-210 (213)
381 PRK00349 uvrA excinuclease ABC 99.9 1E-24 2.2E-29 252.1 24.6 126 81-222 792-927 (943)
382 COG3845 ABC-type uncharacteriz 99.9 4.9E-25 1.1E-29 231.2 19.0 207 7-220 271-490 (501)
383 COG4178 ABC-type uncharacteriz 99.9 5.7E-25 1.2E-29 239.4 15.1 184 4-207 403-587 (604)
384 TIGR00630 uvra excinuclease AB 99.9 1.1E-23 2.4E-28 243.2 22.7 125 80-220 789-923 (924)
385 COG4170 SapD ABC-type antimicr 99.9 4.4E-25 9.6E-30 207.3 8.9 218 2-222 15-248 (330)
386 COG4615 PvdE ABC-type sideroph 99.9 2.8E-25 6.1E-30 225.7 6.6 189 9-216 338-531 (546)
387 cd03276 ABC_SMC6_euk Eukaryoti 99.9 1.2E-23 2.6E-28 204.6 14.5 168 9-210 11-192 (198)
388 KOG0927 Predicted transporter 99.9 5.8E-24 1.3E-28 224.1 12.9 205 4-221 85-308 (614)
389 cd03275 ABC_SMC1_euk Eukaryoti 99.9 3.9E-23 8.4E-28 208.0 11.2 183 15-208 18-233 (247)
390 COG1245 Predicted ATPase, RNas 99.9 1.9E-22 4.1E-27 208.6 15.2 170 13-207 360-530 (591)
391 KOG0927 Predicted transporter 99.9 4.9E-23 1.1E-27 217.1 9.8 186 8-218 404-592 (614)
392 KOG0060 Long-chain acyl-CoA tr 99.9 1.6E-21 3.5E-26 207.1 15.5 189 6-208 447-641 (659)
393 cd03277 ABC_SMC5_euk Eukaryoti 99.9 2.5E-21 5.4E-26 190.3 13.9 81 129-210 123-211 (213)
394 KOG0062 ATPase component of AB 99.9 4.3E-22 9.3E-27 209.0 8.4 192 4-220 90-283 (582)
395 cd03280 ABC_MutS2 MutS2 homolo 99.8 3E-21 6.6E-26 188.1 9.8 153 10-215 17-172 (200)
396 KOG2355 Predicted ABC-type tra 99.8 1.8E-20 3.8E-25 176.1 14.3 197 6-222 26-237 (291)
397 KOG0066 eIF2-interacting prote 99.8 1.9E-20 4.1E-25 192.2 12.7 178 4-208 597-776 (807)
398 COG1245 Predicted ATPase, RNas 99.8 1.9E-20 4.1E-25 193.9 11.1 169 17-208 97-288 (591)
399 PF01061 ABC2_membrane: ABC-2 99.8 8.6E-22 1.9E-26 191.3 0.8 206 328-537 1-210 (210)
400 PRK00635 excinuclease ABC subu 99.8 3.8E-19 8.2E-24 214.2 21.9 200 8-222 1504-1796(1809)
401 COG0178 UvrA Excinuclease ATPa 99.8 5.8E-19 1.3E-23 194.0 20.7 128 80-222 783-919 (935)
402 cd03283 ABC_MutS-like MutS-lik 99.8 3.9E-20 8.4E-25 179.9 9.5 136 6-193 13-149 (199)
403 cd03239 ABC_SMC_head The struc 99.8 3.6E-19 7.7E-24 170.2 15.7 74 133-208 95-172 (178)
404 KOG0062 ATPase component of AB 99.8 1.2E-19 2.6E-24 190.7 13.2 186 8-217 378-564 (582)
405 cd03285 ABC_MSH2_euk MutS2 hom 99.8 6.8E-20 1.5E-24 181.2 7.8 154 5-216 15-175 (222)
406 COG2401 ABC-type ATPase fused 99.8 3.2E-19 7E-24 182.7 12.5 186 5-212 394-588 (593)
407 cd03241 ABC_RecN RecN ATPase i 99.8 6.3E-19 1.4E-23 180.3 13.9 76 131-209 169-248 (276)
408 KOG0064 Peroxisomal long-chain 99.8 3.1E-19 6.7E-24 187.4 10.1 174 6-199 494-674 (728)
409 cd03227 ABC_Class2 ABC-type Cl 99.8 1.4E-18 3.1E-23 163.6 13.5 75 132-208 77-155 (162)
410 PRK00349 uvrA excinuclease ABC 99.7 7E-18 1.5E-22 195.7 14.7 136 79-222 435-585 (943)
411 TIGR00630 uvra excinuclease AB 99.7 1.3E-17 2.9E-22 193.0 15.8 134 80-221 434-582 (924)
412 cd03242 ABC_RecF RecF is a rec 99.7 4.1E-17 8.9E-22 166.4 16.2 77 130-211 181-269 (270)
413 cd03243 ABC_MutS_homologs The 99.7 2.9E-18 6.3E-23 167.4 7.1 156 12-220 21-177 (202)
414 cd03282 ABC_MSH4_euk MutS4 hom 99.7 6.7E-17 1.5E-21 157.7 8.3 137 5-193 14-152 (204)
415 KOG0066 eIF2-interacting prote 99.7 1.2E-17 2.7E-22 171.6 2.7 203 5-218 275-495 (807)
416 cd03284 ABC_MutS1 MutS1 homolo 99.7 4.9E-16 1.1E-20 153.1 11.0 158 6-221 17-180 (216)
417 TIGR02858 spore_III_AA stage I 99.6 1.7E-15 3.8E-20 153.4 10.3 139 21-220 112-267 (270)
418 KOG0063 RNAse L inhibitor, ABC 99.6 3.4E-15 7.4E-20 153.9 12.2 179 4-206 346-530 (592)
419 PRK00064 recF recombination pr 99.5 3.2E-13 6.9E-18 143.3 19.6 78 130-211 271-359 (361)
420 smart00534 MUTSac ATPase domai 99.5 5.6E-15 1.2E-19 142.2 4.5 81 130-213 59-141 (185)
421 PF02463 SMC_N: RecF/RecN/SMC 99.5 2.3E-13 4.9E-18 134.5 13.0 88 106-207 121-212 (220)
422 TIGR01069 mutS2 MutS2 family p 99.5 9E-14 1.9E-18 159.7 8.2 137 6-193 302-446 (771)
423 cd03281 ABC_MSH5_euk MutS5 hom 99.5 7.1E-13 1.5E-17 130.4 13.4 126 14-193 21-155 (213)
424 cd00820 PEPCK_HprK Phosphoenol 99.4 1E-13 2.2E-18 120.1 6.1 73 7-90 2-78 (107)
425 TIGR01247 drrB daunorubicin re 99.4 1E-10 2.2E-15 116.8 23.5 145 419-572 88-234 (236)
426 cd03287 ABC_MSH3_euk MutS3 hom 99.4 5E-12 1.1E-16 124.8 12.6 135 6-193 17-155 (222)
427 TIGR03062 pip_yhgE_Cterm YhgE/ 99.4 2.7E-11 5.8E-16 118.6 17.6 148 419-578 58-207 (208)
428 KOG0063 RNAse L inhibitor, ABC 99.4 1.6E-12 3.5E-17 134.4 8.9 170 18-208 98-288 (592)
429 PTZ00132 GTP-binding nuclear p 99.3 1.2E-12 2.7E-17 128.8 7.0 44 137-180 157-205 (215)
430 TIGR00634 recN DNA repair prot 99.3 4.5E-12 9.8E-17 142.2 9.5 77 131-210 439-519 (563)
431 cd01128 rho_factor Transcripti 99.3 9.4E-12 2E-16 124.9 10.4 77 129-211 126-211 (249)
432 PRK07721 fliI flagellum-specif 99.3 7.4E-11 1.6E-15 127.2 16.9 175 6-220 145-341 (438)
433 TIGR01291 nodJ ABC-2 type tran 99.3 2.9E-09 6.3E-14 107.7 27.6 237 330-577 7-250 (253)
434 TIGR00618 sbcc exonuclease Sbc 99.3 9.9E-12 2.2E-16 149.0 10.8 81 128-209 946-1036(1042)
435 PRK10869 recombination and rep 99.3 1.1E-11 2.4E-16 138.1 10.3 76 131-209 429-508 (553)
436 PRK00409 recombination and DNA 99.3 4.8E-12 1E-16 145.9 6.2 81 130-213 388-469 (782)
437 COG0178 UvrA Excinuclease ATPa 99.2 9.2E-11 2E-15 130.1 15.6 137 79-222 427-577 (935)
438 PHA02562 46 endonuclease subun 99.2 1.2E-11 2.7E-16 139.0 9.0 79 129-211 465-555 (562)
439 TIGR03861 phenyl_ABC_PedC alco 99.2 5.8E-09 1.3E-13 105.3 27.4 233 328-576 2-250 (253)
440 PF13304 AAA_21: AAA domain; P 99.2 2.1E-11 4.5E-16 120.8 9.1 64 130-193 234-300 (303)
441 PRK08533 flagellar accessory p 99.2 8.5E-11 1.8E-15 117.1 13.0 153 13-207 17-184 (230)
442 cd03286 ABC_MSH6_euk MutS6 hom 99.2 1.7E-11 3.7E-16 120.8 7.4 135 6-193 16-154 (218)
443 TIGR00025 Mtu_efflux ABC trans 99.2 4.2E-09 9.1E-14 105.0 24.4 162 405-576 64-230 (232)
444 cd01124 KaiC KaiC is a circadi 99.2 1.7E-10 3.6E-15 110.7 12.0 145 23-207 2-163 (187)
445 COG3910 Predicted ATPase [Gene 99.2 4.7E-10 1E-14 105.0 13.3 68 125-193 122-189 (233)
446 PRK13695 putative NTPase; Prov 99.1 2.3E-11 4.9E-16 115.9 3.1 81 130-216 76-158 (174)
447 TIGR02788 VirB11 P-type DNA tr 99.1 2.7E-10 5.9E-15 118.4 10.2 143 13-221 137-280 (308)
448 PRK03918 chromosome segregatio 99.1 2.1E-10 4.6E-15 135.8 9.7 79 128-208 784-868 (880)
449 PRK10246 exonuclease subunit S 99.1 4E-10 8.7E-15 134.7 10.8 80 128-208 945-1032(1047)
450 PRK15066 inner membrane transp 99.1 2.1E-07 4.5E-12 94.3 28.5 151 418-578 101-253 (257)
451 PRK13830 conjugal transfer pro 99.0 3.8E-09 8.2E-14 123.2 17.0 78 148-229 650-736 (818)
452 cd01120 RecA-like_NTPases RecA 99.0 7E-10 1.5E-14 102.9 8.7 64 132-195 67-140 (165)
453 PRK01156 chromosome segregatio 99.0 1.6E-09 3.4E-14 128.5 10.5 77 129-207 798-883 (895)
454 PRK06793 fliI flagellum-specif 99.0 2.6E-09 5.7E-14 114.5 10.5 156 7-217 144-306 (432)
455 cd01131 PilT Pilus retraction 98.9 4E-09 8.7E-14 102.7 10.6 57 142-207 66-122 (198)
456 PRK06067 flagellar accessory p 98.9 7.4E-09 1.6E-13 103.4 12.4 162 10-208 14-187 (234)
457 TIGR02168 SMC_prok_B chromosom 98.9 1.7E-09 3.7E-14 131.6 7.3 77 128-207 1085-1165(1179)
458 TIGR00606 rad50 rad50. This fa 98.9 2.3E-09 5.1E-14 131.3 8.0 70 130-200 1197-1277(1311)
459 cd01125 repA Hexameric Replica 98.9 1.3E-08 2.9E-13 101.9 12.1 136 20-193 1-160 (239)
460 PRK06995 flhF flagellar biosyn 98.8 1.3E-08 2.8E-13 110.6 9.8 151 8-190 244-400 (484)
461 TIGR03238 dnd_assoc_3 dnd syst 98.8 3.6E-09 7.7E-14 113.3 4.3 52 7-61 19-70 (504)
462 PRK02224 chromosome segregatio 98.8 1.3E-08 2.8E-13 120.6 9.5 77 130-208 779-868 (880)
463 TIGR02169 SMC_prok_A chromosom 98.8 9.1E-09 2E-13 125.3 8.0 77 129-208 1071-1151(1164)
464 smart00382 AAA ATPases associa 98.8 2.4E-07 5.3E-12 82.6 14.5 60 131-190 59-124 (148)
465 COG0842 ABC-type multidrug tra 98.7 2.9E-06 6.2E-11 85.8 23.5 167 405-580 116-285 (286)
466 TIGR01420 pilT_fam pilus retra 98.7 1.6E-07 3.4E-12 99.2 12.7 56 142-206 187-242 (343)
467 PRK13891 conjugal transfer pro 98.6 1.1E-06 2.3E-11 103.4 18.3 52 143-194 680-732 (852)
468 TIGR01026 fliI_yscN ATPase Fli 98.6 6.4E-07 1.4E-11 97.0 14.5 176 6-220 150-346 (440)
469 TIGR00611 recf recF protein. A 98.6 8.2E-08 1.8E-12 102.1 7.1 60 131-193 274-342 (365)
470 PRK07196 fliI flagellum-specif 98.6 6.7E-08 1.5E-12 103.8 5.9 174 6-215 142-334 (434)
471 TIGR01248 drrC daunorubicin re 98.6 3.3E-06 7.1E-11 78.7 16.3 129 402-533 14-146 (152)
472 PRK14079 recF recombination pr 98.5 1.4E-07 3.1E-12 99.8 7.8 78 131-216 262-348 (349)
473 TIGR03881 KaiC_arch_4 KaiC dom 98.5 2E-08 4.3E-13 99.8 1.3 33 9-41 8-41 (229)
474 COG0419 SbcC ATPase involved i 98.5 2.4E-07 5.1E-12 110.0 10.4 79 128-208 811-897 (908)
475 TIGR02655 circ_KaiC circadian 98.5 2.5E-08 5.4E-13 110.1 1.8 166 9-207 9-190 (484)
476 cd01130 VirB11-like_ATPase Typ 98.5 2.2E-07 4.8E-12 89.5 8.0 81 11-93 16-99 (186)
477 PRK05399 DNA mismatch repair p 98.5 2.1E-07 4.5E-12 109.0 8.4 138 7-202 595-738 (854)
478 cd02023 UMPK Uridine monophosp 98.4 3E-07 6.4E-12 89.3 5.0 112 22-165 1-113 (198)
479 PRK13898 type IV secretion sys 98.3 2.1E-05 4.5E-10 92.3 19.6 48 147-194 639-687 (800)
480 TIGR02680 conserved hypothetic 98.3 7.8E-07 1.7E-11 109.0 7.1 60 129-191 1244-1315(1353)
481 PLN03210 Resistant to P. syrin 98.3 1.6E-06 3.5E-11 105.4 9.8 162 13-229 200-365 (1153)
482 PRK09825 idnK D-gluconate kina 98.3 4.3E-07 9.2E-12 86.8 3.6 65 19-89 2-69 (176)
483 cd01122 GP4d_helicase GP4d_hel 98.3 2.2E-05 4.8E-10 80.0 15.7 37 7-43 17-53 (271)
484 PRK06002 fliI flagellum-specif 98.2 2E-06 4.3E-11 92.7 7.6 170 7-215 153-344 (450)
485 PRK13873 conjugal transfer ATP 98.2 4.4E-05 9.5E-10 89.7 18.9 45 149-193 634-679 (811)
486 PF13555 AAA_29: P-loop contai 98.2 1.8E-06 4E-11 67.2 4.4 35 10-44 12-47 (62)
487 PF13558 SbcCD_C: Putative exo 98.2 3.5E-06 7.7E-11 71.2 6.3 49 129-177 29-90 (90)
488 PRK06315 type III secretion sy 98.1 7.8E-06 1.7E-10 88.3 9.3 109 7-118 152-277 (442)
489 COG1682 TagG ABC-type polysacc 98.1 0.0014 3E-08 66.5 24.9 230 326-580 16-258 (263)
490 PRK01889 GTPase RsgA; Reviewed 98.1 3.4E-06 7.5E-11 89.4 5.8 106 10-123 185-291 (356)
491 cd00009 AAA The AAA+ (ATPases 98.1 2.3E-05 5E-10 70.4 10.5 55 138-193 72-131 (151)
492 PRK09270 nucleoside triphospha 98.1 4.2E-06 9.2E-11 83.3 5.3 72 18-92 31-106 (229)
493 PRK00454 engB GTP-binding prot 98.1 1.8E-05 4E-10 76.1 9.5 67 107-181 126-195 (196)
494 TIGR03518 ABC_perm_GldF glidin 98.1 0.0023 5.1E-08 64.2 24.8 153 407-576 71-239 (240)
495 TIGR00416 sms DNA repair prote 98.0 1.4E-05 3E-10 87.4 8.8 62 149-210 169-247 (454)
496 TIGR00554 panK_bact pantothena 98.0 4.1E-06 8.9E-11 85.9 4.1 73 21-94 63-138 (290)
497 PF00488 MutS_V: MutS domain V 98.0 0.00017 3.7E-09 72.1 15.4 46 148-193 120-167 (235)
498 PRK10078 ribose 1,5-bisphospho 98.0 7E-06 1.5E-10 79.0 5.1 37 20-61 2-38 (186)
499 TIGR02524 dot_icm_DotB Dot/Icm 98.0 3.5E-05 7.7E-10 81.7 10.8 43 18-60 132-175 (358)
500 cd01876 YihA_EngB The YihA (En 98.0 8.9E-06 1.9E-10 75.2 5.5 45 130-178 120-169 (170)
No 1
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=7.5e-106 Score=905.84 Aligned_cols=552 Identities=49% Similarity=0.887 Sum_probs=467.4
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHH
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVK 84 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~ 84 (583)
+++.+|+|+|+++++||++||+||||||||||||+|+|+......+|+|.+||+++.+..++++|||+|++.+++.+||+
T Consensus 79 ~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~ 158 (659)
T PLN03211 79 QERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVR 158 (659)
T ss_pred CCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcccccCCcCCHH
Confidence 46789999999999999999999999999999999999764222589999999987655567799999999999999999
Q ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCC
Q 007952 85 ETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLD 164 (583)
Q Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD 164 (583)
||+.+++.++.+...++++++++++++++.+||+++.|+.+|+..+++||||||||++||++|+.+|++|+|||||+|||
T Consensus 159 E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD 238 (659)
T PLN03211 159 ETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLD 238 (659)
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcC
Confidence 99999988776655566777788999999999999999999998899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHHHHHhcCCCCCCCCChHHHHHHh
Q 007952 165 STTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEFLLDL 244 (583)
Q Consensus 165 ~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~~g~~~~~~~npad~~~~~ 244 (583)
+.++.++++.|++++++|+|||+++|||+.++++.||++++|++|++++.|+++++.+||+++|++||++.|||||++|+
T Consensus 239 ~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpADf~ldv 318 (659)
T PLN03211 239 ATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFLLDL 318 (659)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHH
Confidence 99999999999999988999999999998778899999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCCCchhhhhhhcccccccccCCCCChhhHHHHHHHHHHHhhhHHHHhhh--c-CCCCCcHHH---hhhc-CC
Q 007952 245 ANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENEKKKL--M-APIPLDEEI---KAKV-SS 317 (583)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~---~~~~-~~ 317 (583)
++.+......... ..+ ...+.+.+.|++...+...... . ......+.. .... ..
T Consensus 319 ~~~~~~~~~~~~~----------------~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (659)
T PLN03211 319 ANGVCQTDGVSER----------------EKP---NVKQSLVASYNTLLAPKVKAAIEMSHFPQANARFVGSASTKEHRS 379 (659)
T ss_pred cCccccCCCcccc----------------ccc---hHHHHHHHHHHhhccHHHHHHHhhhhhhcchhhhhhccccccccc
Confidence 8754211000000 000 0011122222211100000000 0 000000000 0000 01
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 007952 318 PKRNWGASWIQQYTILFRRGIKEHRHDYFSWLRITQVLATAVILGLLWWQSDSKSPKGLEDQAGLLFFIAVFWSFFPIFT 397 (583)
Q Consensus 318 ~~~~~~~s~~~q~~~l~~R~~~~~r~~~~~~~r~~~~~~~~li~G~lf~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~ 397 (583)
.++.+.++||+|+.+|++|+++++|++.+.+.|+++.+++|+++|++||+++ +.++++|.|++||+++++++.+++.
T Consensus 380 ~~~~~~~s~~~Q~~~L~~R~~~~~r~~~~~~~r~~~~i~~~ll~G~lf~~~~---~~~~~~r~g~lff~~~~~~~~~~~~ 456 (659)
T PLN03211 380 SDRISISTWFNQFSILLQRSLKERKHESFNTLRVFQVIAAALLAGLMWWHSD---FRDVQDRLGLLFFISIFWGVFPSFN 456 (659)
T ss_pred CCCccCCCHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1123557899999999999999999998888999999999999999999984 5789999999999999988888889
Q ss_pred HHHHHHHhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 007952 398 AIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQGLG 477 (583)
Q Consensus 398 ~i~~~~~er~v~~rE~~~~~Y~~~ay~la~~l~~lP~~~~~~~~~~~i~Y~~~gl~~~~~~f~~~~~~~~l~~~~~~~~g 477 (583)
+++.|+.||++|+||+++|+|++++|++||+++|+|+.++.+++|++|+|||+||++++.+||+|++++++..++++++|
T Consensus 457 ~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g 536 (659)
T PLN03211 457 SVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLG 536 (659)
T ss_pred HHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHhhcccCCCccchhhhhccCHHHHHHHHHHHHHcCCCCC-----CCC-------
Q 007952 478 LAIGAILMDLKKATTLASVTIMTFMLAGGYFVQEVPVFISWIRYMSFNFHTYKILLKIQYADISP-----IVN------- 545 (583)
Q Consensus 478 ~~i~~~~~~~~~A~~~~~~~~~~~~l~~Gf~i~~ip~~~~Wl~yis~~~ya~~~l~~~ef~~~~~-----~~~------- 545 (583)
+++|+++||...|+.+++++++++++|+||++++||+||+|++|+||++||||+++.|||++... .+.
T Consensus 537 ~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~~ip~~~~W~~ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~ 616 (659)
T PLN03211 537 LALGAAIMDAKKASTIVTVTMLAFVLTGGFYVHKLPSCMAWIKYISTTFYSYRLLINVQYGEGKRISSLLGCSLPHGSDR 616 (659)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHhhchHHHHHHHHhCHHHHHHHHHHHHhcCCccccccccCCCCcccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999976321 111
Q ss_pred ---------CcccCcchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 007952 546 ---------GMRTDSGFREVCALVAMVFGYRLLAYLSLRKMK 578 (583)
Q Consensus 546 ---------g~~~~~~~~~~~~l~~~~~~~~~l~~~~L~~~~ 578 (583)
+.+....|.++++|++++++||+++|++|++.+
T Consensus 617 ~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~L~~~~ 658 (659)
T PLN03211 617 ASCKFVEEDVAGQISPATSVSVLIFMFVGYRLLAYLALRRIK 658 (659)
T ss_pred CCCccchhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 111224578999999999999999999999765
No 2
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1e-105 Score=896.24 Aligned_cols=546 Identities=43% Similarity=0.751 Sum_probs=474.9
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCC-CcccEEEECCccCC-ccccccEEEEccCCCCCCCCCH
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYS-KSLKSKIGFVTQDDVLFPHLTV 83 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~-~~~G~I~~~g~~~~-~~~~~~i~yv~Q~~~~~~~lTv 83 (583)
.|++|+|||++++|||++|||||||||||||||+|+|+...+ ..+|+|.+||++.. +..++.+|||+|||.++|++||
T Consensus 42 ~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV 121 (613)
T KOG0061|consen 42 TKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTV 121 (613)
T ss_pred cceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccH
Confidence 589999999999999999999999999999999999998653 58999999997665 4578889999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCC
Q 007952 84 KETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGL 163 (583)
Q Consensus 84 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgL 163 (583)
+|+|.|+|.+|+|.+.++++++++|+++++++||++|+|+++|+...|++||||||||+||.+|++||+||+||||||||
T Consensus 122 ~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGL 201 (613)
T KOG0061|consen 122 RETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGL 201 (613)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCc
Confidence 99999999999999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHHHHHhcCCCCCCCCChHHHHHH
Q 007952 164 DSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEFLLD 243 (583)
Q Consensus 164 D~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~~g~~~~~~~npad~~~~ 243 (583)
|+.++.++++.|+++|++|+|||+|+|||+.+++++||++++|++|+++|+|+++++.+||++.|++||++.||+||++|
T Consensus 202 DS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~ff~~~G~~~P~~~Npadf~l~ 281 (613)
T KOG0061|consen 202 DSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLEFFSSLGFPCPELENPADFLLD 281 (613)
T ss_pred chhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHHHHHhCCCCCCCcCChHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCCCCchhhhhhhcccccccccCCCCChhhHHHHHHHHHHHhhhHHHHhhhcCCCCCcHHHhhhcCCCCCCCC
Q 007952 244 LANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENEKKKLMAPIPLDEEIKAKVSSPKRNWG 323 (583)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (583)
+++.+ .. ..+..+..+..... ...+. . ....+... ++ .+.... . ........
T Consensus 282 l~s~~-~~---~~~~~~~~~~~~~~-~~~~~-~--~~~~~~~~-~~--------~~~~~~------~-----~~~~~~~~ 333 (613)
T KOG0061|consen 282 LLSVD-SG---TRELEEAVRIAKLI-NKFSQ-T--DNLKKTLE-AL--------EKSLST------S-----KKVEIGTS 333 (613)
T ss_pred HHccC-CC---chhHHhHHHHHHHh-hhccc-c--chhhhhHH-HH--------hhhccc------c-----cccccccC
Confidence 98754 10 00111000000000 00000 0 00000000 00 000000 0 00001116
Q ss_pred CCHHHHHHHHHHHHHHH-hhcchhHHHHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007952 324 ASWIQQYTILFRRGIKE-HRHDYFSWLRITQVLATAVILGLLWWQSDSKSPKGLEDQAGLLFFIAVFWSFFPIFTAIFTF 402 (583)
Q Consensus 324 ~s~~~q~~~l~~R~~~~-~r~~~~~~~r~~~~~~~~li~G~lf~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~i~~~ 402 (583)
++||.|+++|++|.+++ .|++.+.+.|+++.+.+|+++|++||+.+. +++++++|.|++||++.++.+.+++++++.|
T Consensus 334 ~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~-~~~~~~~~~g~~~~~~~~~~f~~~~~~i~~f 412 (613)
T KOG0061|consen 334 PSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGN-DAKGIQNRLGLFFFILSFMTFLSMFGAVPVF 412 (613)
T ss_pred CcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCC-chHHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Confidence 89999999999999998 677888899999999999999999999964 5788889999999999999899988899999
Q ss_pred HHhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007952 403 PQERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQGLGLAIGA 482 (583)
Q Consensus 403 ~~er~v~~rE~~~~~Y~~~ay~la~~l~~lP~~~~~~~~~~~i~Y~~~gl~~~~~~f~~~~~~~~l~~~~~~~~g~~i~~ 482 (583)
++||++|.||+.+|+|+.++||+|++++++|+.++.+++|++|+|||+|+++++.+|++|++++++..++++++|+++++
T Consensus 413 ~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~~~~i~~ 492 (613)
T KOG0061|consen 413 PQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAESLGLFISA 492 (613)
T ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHhhcccC--CCccchhhhhccCHHHHHHHHHHHHHcCC-CCC-------C---------
Q 007952 483 ILMDLKKATTLASVTIMTFMLAGGYFVQ--EVPVFISWIRYMSFNFHTYKILLKIQYAD-ISP-------I--------- 543 (583)
Q Consensus 483 ~~~~~~~A~~~~~~~~~~~~l~~Gf~i~--~ip~~~~Wl~yis~~~ya~~~l~~~ef~~-~~~-------~--------- 543 (583)
++||...|+.+++++++++++|+||+++ ++|.||+|++|+||++|+||+++.|||.+ ... .
T Consensus 493 ~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~~~~~~~~~~~~~~~~l 572 (613)
T KOG0061|consen 493 IVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGGSSRCFLSGNLCCESTGEDVL 572 (613)
T ss_pred hccchhheeehHHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhccccccccCcCCcccccHHHHH
Confidence 9999999999999999999999999997 89999999999999999999999999985 111 0
Q ss_pred -CCCcccCcchhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 007952 544 -VNGMRTDSGFREVCALVAMVFGYRLLAYLSLRKMKLH 580 (583)
Q Consensus 544 -~~g~~~~~~~~~~~~l~~~~~~~~~l~~~~L~~~~~~ 580 (583)
..+++.++.|.|+.++++++++||+++|++|++..++
T Consensus 573 ~~~~~~~~~~~~~l~~l~~~~~~~~il~y~~L~~~~~~ 610 (613)
T KOG0061|consen 573 KQLGFEDSSFWLDLLVLLAFIVFFRVLGYLALRFRVKR 610 (613)
T ss_pred HhcCCcccccchhHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 0123345678999999999999999999999886654
No 3
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=3.3e-101 Score=867.46 Aligned_cols=553 Identities=34% Similarity=0.589 Sum_probs=470.3
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCC-CcccEEEECCccCCc-cccccEEEEccCCCCCCCC
Q 007952 4 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYSK-SLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 4 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~-~~~G~I~~~g~~~~~-~~~~~i~yv~Q~~~~~~~l 81 (583)
.++|++|+|+|+++++||+++|+|||||||||||++|+|+.... ..+|+|.+||.+++. ..++.+|||+|+|.+++.+
T Consensus 35 ~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~l 114 (617)
T TIGR00955 35 RPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTL 114 (617)
T ss_pred cCccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccC
Confidence 34688999999999999999999999999999999999976422 247999999998763 4577899999999999999
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCc-cCcccChHHHHHHHHHHHHHhCCCEEEEeCCC
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGS-FVRGVSGGERKRVCIGNEIIINPSLLFLDEPT 160 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~-~~~~LSgGerqRv~ia~~L~~~p~illLDEPt 160 (583)
||+|||.|++.++.+...++++++++++++++.+||.+++|+.+|+. ..++||||||||++||++|+.+|++++|||||
T Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPt 194 (617)
T TIGR00955 115 TVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPT 194 (617)
T ss_pred cHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCC
Confidence 99999999999988877778888889999999999999999999975 36899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHHHHHhcCCCCCCCCChHHH
Q 007952 161 SGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEF 240 (583)
Q Consensus 161 sgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~~g~~~~~~~npad~ 240 (583)
+|||+.++.++++.|++++++|+|||+++|||+.++++.||++++|++|+++|+|+++++.+||+++|++||++.||+||
T Consensus 195 sgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~ 274 (617)
T TIGR00955 195 SGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADF 274 (617)
T ss_pred cchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHHH
Confidence 99999999999999999998899999999999888999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCCCCCchhhhhhhcccccccccCCCCChhhHHHHHHHHHHHhhhH-HHHhhhcCCCCCcHHH-hhhcCCC
Q 007952 241 LLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAE-NEKKKLMAPIPLDEEI-KAKVSSP 318 (583)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~ 318 (583)
++++++.+......+ . ...+.+.+.|++.... ................ +......
T Consensus 275 ~~~~~~~~~~~~~~~---~--------------------~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (617)
T TIGR00955 275 YVQVLAVIPGSENES---R--------------------ERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENME 331 (617)
T ss_pred HHHHhhcCcccccch---H--------------------HHHHHHHHHHhcchhhHHHHHHhhhhhcccccccccccccc
Confidence 999986432110000 0 0001111111111000 0000000000000000 0000012
Q ss_pred CCCCCCCHHHHHHHHHHHHHHH-hhcchhHHHHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 007952 319 KRNWGASWIQQYTILFRRGIKE-HRHDYFSWLRITQVLATAVILGLLWWQSDSKSPKGLEDQAGLLFFIAVFWSFFPIFT 397 (583)
Q Consensus 319 ~~~~~~s~~~q~~~l~~R~~~~-~r~~~~~~~r~~~~~~~~li~G~lf~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~ 397 (583)
...+..+|++|+.+|++|++++ +|++.+.+.|+++.+++|+++|++||+++. ++.++++|.|++|+++++.+|.+++.
T Consensus 332 ~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~-~~~~~~~~~g~lf~~~~~~~f~~~~~ 410 (617)
T TIGR00955 332 GIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGL-TQKGVQNINGALFLFLTNMTFQNVFP 410 (617)
T ss_pred ccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2346789999999999999986 688888889999999999999999999975 57899999999999999888888888
Q ss_pred HHHHHHHhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 007952 398 AIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQGLG 477 (583)
Q Consensus 398 ~i~~~~~er~v~~rE~~~~~Y~~~ay~la~~l~~lP~~~~~~~~~~~i~Y~~~gl~~~~~~f~~~~~~~~l~~~~~~~~g 477 (583)
++..|+.||++|.||+.+|+|++++|++|++++|+|+.++.+++|.+|+|||+|+++++.+||.|++++++..++++++|
T Consensus 411 ~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~ 490 (617)
T TIGR00955 411 VINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFG 490 (617)
T ss_pred HHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHhhcccC--CCccchhhhhccCHHHHHHHHHHHHHcCCCCC-C---------C-
Q 007952 478 LAIGAILMDLKKATTLASVTIMTFMLAGGYFVQ--EVPVFISWIRYMSFNFHTYKILLKIQYADISP-I---------V- 544 (583)
Q Consensus 478 ~~i~~~~~~~~~A~~~~~~~~~~~~l~~Gf~i~--~ip~~~~Wl~yis~~~ya~~~l~~~ef~~~~~-~---------~- 544 (583)
+++++++||...|..+++++++++++|+||+++ +||+||+|++|+||++||||+++.|||.+... . +
T Consensus 491 ~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef~~~~~~~c~~~~~~~~c~ 570 (617)
T TIGR00955 491 YLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCP 570 (617)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHhCCCccccccCcCcCCCCC
Confidence 999999999999999999999999999999997 89999999999999999999999999987432 1 1
Q ss_pred ---------CCcccCcchhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 007952 545 ---------NGMRTDSGFREVCALVAMVFGYRLLAYLSLRKMKLH 580 (583)
Q Consensus 545 ---------~g~~~~~~~~~~~~l~~~~~~~~~l~~~~L~~~~~~ 580 (583)
.|++.++.|.++++|+++.++|++++|++|++..++
T Consensus 571 ~~g~~~l~~~g~~~~~~~~~~~il~~~~~~~~~l~~~~L~~~~~~ 615 (617)
T TIGR00955 571 SSGEVILETLSFRNADLYLDLIGLVILIFFFRLLAYFALRIRIRR 615 (617)
T ss_pred cChHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 133344568899999999999999999999875443
No 4
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=3.6e-97 Score=892.78 Aligned_cols=555 Identities=26% Similarity=0.420 Sum_probs=462.7
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC--CCcccEEEECCccCCc---cccccEEEEccCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME--PTVGGSITYNDHPYSK---SLKSKIGFVTQDDVLFP 79 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~--~~~~G~I~~~g~~~~~---~~~~~i~yv~Q~~~~~~ 79 (583)
.+++||+|+|+++++||+++|+||||||||||||+|+|+... .+.+|+|.+||+++.+ ..++.++||+|+|.+++
T Consensus 72 ~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~ 151 (1394)
T TIGR00956 72 KTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFP 151 (1394)
T ss_pred CcceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCC
Confidence 457799999999999999999999999999999999997531 3478999999987642 34667999999999999
Q ss_pred CCCHHHHHHHHHHcCCCC----CCCHHHHHHH-HHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEE
Q 007952 80 HLTVKETLTYAALLRLPN----TLTKQQKEKR-AIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLL 154 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~~----~~~~~~~~~~-v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~il 154 (583)
.+||+||+.|++.++.|. ..++++..++ ++++++.+||++++|+++|++.+++|||||||||+||++|+.+|+++
T Consensus 152 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vl 231 (1394)
T TIGR00956 152 HLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQ 231 (1394)
T ss_pred CCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEE
Confidence 999999999998877653 2344554444 56789999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHHHHHhcCCCCCC
Q 007952 155 FLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQI 233 (583)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~~g~~~~~ 233 (583)
+|||||+|||+.++.++++.|++++++ |+|||+++|||+.+++++||++++|++|+++++|+++++.+||+++|++||+
T Consensus 232 llDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~yF~~lG~~~p~ 311 (1394)
T TIGR00956 232 CWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPD 311 (1394)
T ss_pred EEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHHHHHcCCCCCC
Confidence 999999999999999999999999875 9999999999988899999999999999999999999999999999999999
Q ss_pred CCChHHHHHHhhcCCCCCCCCCchhhhhhhcccccccccCCCCChhhHHHHHHHHHHHh------hhHHHHh-hhcCCCC
Q 007952 234 AMNPAEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETR------VAENEKK-KLMAPIP 306 (583)
Q Consensus 234 ~~npad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~-~~~~~~~ 306 (583)
+.|||||++++++.+.+.... ..++.. ....+ .+.+.|+++ ..+.+.. +......
T Consensus 312 ~~n~aDfl~~~~~~~~~~~~~--~~e~~~------------~~~~~----~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 373 (1394)
T TIGR00956 312 RQTTADFLTSLTSPAERQIKP--GYEKKV------------PRTPQ----EFETYWRNSPEYAQLMKEIDEYLDRCSESD 373 (1394)
T ss_pred CCChHHHHHhccChhhhhccc--cccccC------------CCCHH----HHHHHHHcCHHHHHHHHHHHHHhhhccchh
Confidence 999999999998654321110 000000 00111 112222111 0000000 0000000
Q ss_pred Cc-------HHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHH-hhcchhHHHHHHHHHHHHHHHHHHhhCCCCCChhhHHH
Q 007952 307 LD-------EEIKAKVSSPKRNWGASWIQQYTILFRRGIKE-HRHDYFSWLRITQVLATAVILGLLWWQSDSKSPKGLED 378 (583)
Q Consensus 307 ~~-------~~~~~~~~~~~~~~~~s~~~q~~~l~~R~~~~-~r~~~~~~~r~~~~~~~~li~G~lf~~~~~~~~~~~~~ 378 (583)
.. ...+.......+.+..|+|+|+++|++|++++ +|++...+.|+++.+++|+++|++||+++. +++++++
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~-~~~~~~~ 452 (1394)
T TIGR00956 374 TKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPK-NTSDFYS 452 (1394)
T ss_pred hHHHHHHHHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCC-CchhHHH
Confidence 00 00000111233457889999999999999987 677778899999999999999999999975 5689999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCChHH
Q 007952 379 QAGLLFFIAVFWSFFPIFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGP 458 (583)
Q Consensus 379 ~~g~lf~~~~~~~~~~~~~~i~~~~~er~v~~rE~~~~~Y~~~ay~la~~l~~lP~~~~~~~~~~~i~Y~~~gl~~~~~~ 458 (583)
|.|++||++++.++.++ ..+..++.||+||+||+.+++|++++|++|++++|+|+.++.+++|++|+|||+||++++++
T Consensus 453 r~g~lf~~~~~~~~~~~-~~i~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~ 531 (1394)
T TIGR00956 453 RGGALFFAILFNAFSSL-LEIASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGR 531 (1394)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHH
Confidence 99999999999888774 56777889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcccC--CCccchhhhhccCHHHHHHHHHHHHH
Q 007952 459 FFLSMLTVFLSIVAAQGLGLAIGAILMDLKKATTLASVTIMTFMLAGGYFVQ--EVPVFISWIRYMSFNFHTYKILLKIQ 536 (583)
Q Consensus 459 f~~~~~~~~l~~~~~~~~g~~i~~~~~~~~~A~~~~~~~~~~~~l~~Gf~i~--~ip~~~~Wl~yis~~~ya~~~l~~~e 536 (583)
||+|+++++++.++++++++++|+++||...|+.+++++++++++|+||+++ +||+||+|++|+||++|||||++.||
T Consensus 532 Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~ne 611 (1394)
T TIGR00956 532 FFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNE 611 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccHHHHHHHHcCHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999997 89999999999999999999999999
Q ss_pred cCCCCCCC--------------------------------C---------CcccCcchhhHHHHHHHHHHHHHHHHHHHH
Q 007952 537 YADISPIV--------------------------------N---------GMRTDSGFREVCALVAMVFGYRLLAYLSLR 575 (583)
Q Consensus 537 f~~~~~~~--------------------------------~---------g~~~~~~~~~~~~l~~~~~~~~~l~~~~L~ 575 (583)
|++....+ . |++.++.|.|+++|+++.++|++++++++.
T Consensus 612 f~~~~~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~~~~~~~~~~w~n~gil~~~~v~f~~~~~l~l~ 691 (1394)
T TIGR00956 612 FHGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKLSFQYYNSHKWRNFGIIIGFTVFFFFVYILLTE 691 (1394)
T ss_pred hcCCcccccccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 97632111 1 122334588999999999999999999999
Q ss_pred Hhhh
Q 007952 576 KMKL 579 (583)
Q Consensus 576 ~~~~ 579 (583)
+.+.
T Consensus 692 ~~~~ 695 (1394)
T TIGR00956 692 FNKG 695 (1394)
T ss_pred hccc
Confidence 8773
No 5
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=2.6e-96 Score=882.51 Aligned_cols=548 Identities=27% Similarity=0.464 Sum_probs=467.2
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-cccccEEEEccCCCCCCCCCH
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-SLKSKIGFVTQDDVLFPHLTV 83 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-~~~~~i~yv~Q~~~~~~~lTv 83 (583)
+++.+|+|+|++++|||+++|+||||||||||||+|+|+...++.+|+|.+||++..+ ..++.+|||+|+|.+++.+||
T Consensus 891 ~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV 970 (1470)
T PLN03140 891 DRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTV 970 (1470)
T ss_pred CCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcH
Confidence 3457999999999999999999999999999999999986544578999999988753 356779999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCC
Q 007952 84 KETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGL 163 (583)
Q Consensus 84 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgL 163 (583)
+|||.|++.++.|...+++++.++++++++.+||.++.|+.+|+..+++|||||||||+||++|+.+|++|||||||+||
T Consensus 971 ~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgL 1050 (1470)
T PLN03140 971 RESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1050 (1470)
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Confidence 99999998888776667777778899999999999999999987777899999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcC-CeEEEEcCh----hhHHHHHHhc-CC-CCCCCCC
Q 007952 164 DSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK-GSLLYFGKA----SEAMAYFSSI-GC-SPQIAMN 236 (583)
Q Consensus 164 D~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~-G~iv~~G~~----~~~~~~f~~~-g~-~~~~~~n 236 (583)
|+.++..+++.|++++++|+|||+++|||+.++++.||++++|++ |+++|+|++ +++++||+++ |. +||+..|
T Consensus 1051 D~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yF~~~~g~~~~p~~~N 1130 (1470)
T PLN03140 1051 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYN 1130 (1470)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcccccccHHHHHHhcCCCCCCCCCCC
Confidence 999999999999999999999999999998778899999999996 899999996 6899999998 66 4899999
Q ss_pred hHHHHHHhhcCCCCCCCCCchhhhhhhcccccccccCCCCChhhHHHHHHHHHHHhhhHHHHhhhcCCCCCcHHHhhhcC
Q 007952 237 PAEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENEKKKLMAPIPLDEEIKAKVS 316 (583)
Q Consensus 237 pad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (583)
||||++++++.+... ....+.. +.++.++ .|++..... .....+.+.. ...
T Consensus 1131 PAd~~l~v~~~~~~~-~~~~d~~----------~~~~~s~-----------~~~~~~~~~--~~~~~~~~~~-----~~~ 1181 (1470)
T PLN03140 1131 PATWMLEVSSLAAEV-KLGIDFA----------EHYKSSS-----------LYQRNKALV--KELSTPPPGA-----SDL 1181 (1470)
T ss_pred chhhhhhhhcccccc-cccchHH----------HHHhccH-----------HHHHHHHHH--HHhccCCCCc-----ccc
Confidence 999999997532110 0000000 0011000 011100000 0111111100 011
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHH-hhcchhHHHHHHHHHHHHHHHHHHhhCCCCCC--hhhHHHHHHHHHHHHHHHHHH
Q 007952 317 SPKRNWGASWIQQYTILFRRGIKE-HRHDYFSWLRITQVLATAVILGLLWWQSDSKS--PKGLEDQAGLLFFIAVFWSFF 393 (583)
Q Consensus 317 ~~~~~~~~s~~~q~~~l~~R~~~~-~r~~~~~~~r~~~~~~~~li~G~lf~~~~~~~--~~~~~~~~g~lf~~~~~~~~~ 393 (583)
....++..++|+|+..|++|++++ +|++.+.+.|+++.+++|+++|++||+++++. ..+++++.|++|+.+++.++.
T Consensus 1182 ~~~~~~~~s~~~Q~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al~~G~~f~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~ 1261 (1470)
T PLN03140 1182 YFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGIN 1261 (1470)
T ss_pred ccCccccCCHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhHHHHHHHHHHHHHHHHHH
Confidence 123457889999999999999986 89999999999999999999999999997542 357888999999999888877
Q ss_pred HHHHHHHHHHHhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCChHHHHHHHHHHHHHHHHH
Q 007952 394 PIFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAA 473 (583)
Q Consensus 394 ~~~~~i~~~~~er~v~~rE~~~~~Y~~~ay~la~~l~~lP~~~~~~~~~~~i~Y~~~gl~~~~~~f~~~~~~~~l~~~~~ 473 (583)
.+...++.|+.||++|+|||++|+|++++|++|++++|+|+.++.+++|++|+|||+||++++..||+|+++++++.+++
T Consensus 1262 ~~~~~~p~~~~eR~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~~~~~~~l~~~~~ 1341 (1470)
T PLN03140 1262 NCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYF 1341 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHH
Confidence 76677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcccC--CCccchhhhhccCHHHHHHHHHHHHHcCCCCCC--C-----
Q 007952 474 QGLGLAIGAILMDLKKATTLASVTIMTFMLAGGYFVQ--EVPVFISWIRYMSFNFHTYKILLKIQYADISPI--V----- 544 (583)
Q Consensus 474 ~~~g~~i~~~~~~~~~A~~~~~~~~~~~~l~~Gf~i~--~ip~~~~Wl~yis~~~ya~~~l~~~ef~~~~~~--~----- 544 (583)
+++|+++++++||.++|..+++++++++++|+||++| +||+||+|++|+||++|++++++.|||++.... +
T Consensus 1342 ~~~g~~~~a~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~iP~~~~W~~~isp~~y~~~~l~~~~f~~~~~~~~~~~~~~ 1421 (1470)
T PLN03140 1342 TYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPKWWVWYYWICPVAWTVYGLIVSQYGDVEDTIKVPGGAP 1421 (1470)
T ss_pred HHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHeeeccChHHCchHHHHHHHcCHHHHHHhhhHHHHhCCCCCcccCCCCCC
Confidence 9999999999999999999999999999999999997 899999999999999999999999999885431 1
Q ss_pred -----------CCcccCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 007952 545 -----------NGMRTDSGFREVCALVAMVFGYRLLAYLSLRKMKLHF 581 (583)
Q Consensus 545 -----------~g~~~~~~~~~~~~l~~~~~~~~~l~~~~L~~~~~~~ 581 (583)
.|++.+..|.++++++++.++|++++++++++.++++
T Consensus 1422 ~~~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~~~~~~~q~ 1469 (1470)
T PLN03140 1422 DPTIKWYIQDHYGYDPDFMGPVAAVLVGFTVFFAFIFAFCIRTLNFQT 1469 (1470)
T ss_pred CCcHHHHHHHhcCcCcccccchhhhHHHHHHHHHHHHHHHHHHhhccc
Confidence 2334455678999999999999999999999998775
No 6
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=8.5e-96 Score=878.01 Aligned_cols=555 Identities=25% Similarity=0.400 Sum_probs=456.7
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCC-CcccEEEECCccCCcc-ccccEEEEccCCCCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYSKS-LKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~-~~~G~I~~~g~~~~~~-~~~~i~yv~Q~~~~~~~lT 82 (583)
.++.||+|+|+.++|||+++|+||||||||||||+|+|++.+. ..+|+|.+||+++.+. .++.++||+|+|.+++++|
T Consensus 176 ~~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lT 255 (1470)
T PLN03140 176 TKLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMT 255 (1470)
T ss_pred ccceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCc
Confidence 4578999999999999999999999999999999999986421 2489999999987542 3677999999999999999
Q ss_pred HHHHHHHHHHcCCCC-------CCCHHHH------------------------HHHHHHHHHHcCCCccccccccCccCc
Q 007952 83 VKETLTYAALLRLPN-------TLTKQQK------------------------EKRAIDVINELGLERCQDTMIGGSFVR 131 (583)
Q Consensus 83 v~e~l~~~~~~~~~~-------~~~~~~~------------------------~~~v~~~l~~lgL~~~~~~~ig~~~~~ 131 (583)
|+|||.|++.++.+. ..+++++ +..++++++.+||++|+||.+|+..++
T Consensus 256 V~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~r 335 (1470)
T PLN03140 256 VKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIR 335 (1470)
T ss_pred HHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCcccc
Confidence 999999998776321 1112221 123578999999999999999999999
Q ss_pred ccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhhcCeEEEEcCCe
Q 007952 132 GVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGS 210 (583)
Q Consensus 132 ~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~ 210 (583)
+|||||||||+||++|+.+|++++|||||+|||+.++.++++.|+++++ .|+|||+++|||..+++++||+|++|++|+
T Consensus 336 glSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ 415 (1470)
T PLN03140 336 GISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQ 415 (1470)
T ss_pred CCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCce
Confidence 9999999999999999999999999999999999999999999999987 489999999999888999999999999999
Q ss_pred EEEEcChhhHHHHHHhcCCCCCCCCChHHHHHHhhcCCCCCCCCCchhhhhhhcccccccccCCCCChhhHHHHHHHHHH
Q 007952 211 LLYFGKASEAMAYFSSIGCSPQIAMNPAEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYE 290 (583)
Q Consensus 211 iv~~G~~~~~~~~f~~~g~~~~~~~npad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (583)
++|+||++++.+||+++|++||++.|||||++++++.+... .... . ...+......+.+.++|+
T Consensus 416 ivy~G~~~~~~~yF~~lGf~cP~~~n~ADFl~~v~s~~~~~--------~~~~-~-------~~~p~~~~~~~~~~~~~~ 479 (1470)
T PLN03140 416 IVYQGPRDHILEFFESCGFKCPERKGTADFLQEVTSKKDQE--------QYWA-D-------RNKPYRYISVSEFAERFK 479 (1470)
T ss_pred EEEeCCHHHHHHHHHHcCCCCCCCCChHHHHHHhcCchhhh--------hhhh-c-------cCCccccCCHHHHHHHHH
Confidence 99999999999999999999999999999999998642110 0000 0 000000001122334443
Q ss_pred HhhhH-HHHhhhcCCCCCcHHHhhhcCCCCCCCCCCHHHHHHHHHHHHHHH-hhcchhHHHHHHHHHHHHHHHHHHhhCC
Q 007952 291 TRVAE-NEKKKLMAPIPLDEEIKAKVSSPKRNWGASWIQQYTILFRRGIKE-HRHDYFSWLRITQVLATAVILGLLWWQS 368 (583)
Q Consensus 291 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~l~~R~~~~-~r~~~~~~~r~~~~~~~~li~G~lf~~~ 368 (583)
+.... ....+...+ .++..........+.|..+++.|++.|++|+++. +||+..++.|+++.+++|+++|++||++
T Consensus 480 ~s~~~~~~~~~~~~~--~~~~~~~~~~~~~~~y~~s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~ 557 (1470)
T PLN03140 480 SFHVGMQLENELSVP--FDKSQSHKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRT 557 (1470)
T ss_pred hcHHHHHHHHHHhhh--hhhhhcccccccCCCCcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 22110 000111111 1111001111223458889999999999999986 6777788899999999999999999998
Q ss_pred CCCC--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 007952 369 DSKS--PKGLEDQAGLLFFIAVFWSFFPIFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIV 446 (583)
Q Consensus 369 ~~~~--~~~~~~~~g~lf~~~~~~~~~~~~~~i~~~~~er~v~~rE~~~~~Y~~~ay~la~~l~~lP~~~~~~~~~~~i~ 446 (583)
+.+. ..+.+.+.|++||++++.++.+ +..+..++.||+||+|||+.++|++++|++|++++|+|+.++.+++|++|+
T Consensus 558 ~~~~~~~~~~~~~~g~lff~~l~~~~~~-~~~l~~~~~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~ 636 (1470)
T PLN03140 558 EMHTRNEEDGALYIGALLFSMIINMFNG-FAELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVIT 636 (1470)
T ss_pred CCCCCcchhHHHHHHHHHHHHHHHHHHH-HHHHHHHHhccchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 6431 2345678899999888877655 577899999999999999999999999999999999999999999999999
Q ss_pred hhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcccC--CCccchhhhhccCH
Q 007952 447 YFMAGLRMGAGPFFLSMLTVFLSIVAAQGLGLAIGAILMDLKKATTLASVTIMTFMLAGGYFVQ--EVPVFISWIRYMSF 524 (583)
Q Consensus 447 Y~~~gl~~~~~~f~~~~~~~~l~~~~~~~~g~~i~~~~~~~~~A~~~~~~~~~~~~l~~Gf~i~--~ip~~~~Wl~yis~ 524 (583)
|||+||++++++||+|+++++++.++++++++++++++||+.+|+.+++++++++++|+||+++ +||+||+|++|+||
T Consensus 637 Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp 716 (1470)
T PLN03140 637 YYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSP 716 (1470)
T ss_pred hhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCH
Confidence 9999999999999999999999999999999999999999999999999999999999999997 89999999999999
Q ss_pred HHHHHHHHHHHHcCCCCC---------CC--------CCcccCc--chhhHHHHHHHHHHHHHHHHHHHHHhh
Q 007952 525 NFHTYKILLKIQYADISP---------IV--------NGMRTDS--GFREVCALVAMVFGYRLLAYLSLRKMK 578 (583)
Q Consensus 525 ~~ya~~~l~~~ef~~~~~---------~~--------~g~~~~~--~~~~~~~l~~~~~~~~~l~~~~L~~~~ 578 (583)
++|||||++.|||.+... .. .|+..++ .|.++++|++++++|++++|++|++.+
T Consensus 717 ~~Ya~eal~~NEf~~~~~~~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~ 789 (1470)
T PLN03140 717 LSYGFNALAVNEMFAPRWMNKMASDNSTRLGTAVLNIFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLN 789 (1470)
T ss_pred HHHHHHHHHHHhccCccccCcccCCCCcccHHHHHHhcCcCccccchhhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999965421 11 1333332 377899999999999999999999876
No 7
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=2.4e-92 Score=851.02 Aligned_cols=544 Identities=29% Similarity=0.471 Sum_probs=454.2
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCC-CcccEEEECCccCCccccccEEEEccCCCCCCCCCH
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTV 83 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~-~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv 83 (583)
+++.+|+|||+++++||++||+||||||||||||+|+|+...+ +.+|+|.+||+++.+..++.+|||+|+|.+++.+||
T Consensus 774 ~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i~yv~Q~~~~~~~~Tv 853 (1394)
T TIGR00956 774 EKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTV 853 (1394)
T ss_pred CCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcceeeecccccCCCCCCH
Confidence 3568999999999999999999999999999999999986422 467999999999866677889999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCC-EEEEeCCCCC
Q 007952 84 KETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPS-LLFLDEPTSG 162 (583)
Q Consensus 84 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~-illLDEPtsg 162 (583)
+|||.|++.++.|...++++++++++++++.+||.+++|+.+|+. ..+||||||||++||++|+.+|+ +|+|||||+|
T Consensus 854 ~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~-~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsg 932 (1394)
T TIGR00956 854 RESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVP-GEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSG 932 (1394)
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCC-CCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCC
Confidence 999999998887766677777889999999999999999998743 34899999999999999999997 9999999999
Q ss_pred CCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCC-eEEEEcCh----hhHHHHHHhcCC-CCCCCCC
Q 007952 163 LDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKG-SLLYFGKA----SEAMAYFSSIGC-SPQIAMN 236 (583)
Q Consensus 163 LD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G-~iv~~G~~----~~~~~~f~~~g~-~~~~~~n 236 (583)
||+.++..+++.|++++++|+|||+++|||+..+++.||++++|++| +++|+|++ +++++||++.|+ +||++.|
T Consensus 933 LD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~~~~~~~~yf~~~G~~~~p~~~N 1012 (1394)
T TIGR00956 933 LDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTIINYFEKHGAPKCPEDAN 1012 (1394)
T ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcccccchHHHHHHhcCCCCCCCCCC
Confidence 99999999999999999889999999999987778899999999987 99999997 578999999996 9999999
Q ss_pred hHHHHHHhhcCCCCCCCCCchhhhhhhcccccccccCCCCChhhHHHHHHHHHHHhhhHHHHhhhcCCCCCcHHHhhhcC
Q 007952 237 PAEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENEKKKLMAPIPLDEEIKAKVS 316 (583)
Q Consensus 237 pad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (583)
||||++|+++....... .....+ .++.++...... +... ....+...... . ...
T Consensus 1013 pAd~~ldvi~~~~~~~~-~~~~~~----------~~~~s~~~~~~~--------~~~~-----~~~~~~~~~~~-~-~~~ 1066 (1394)
T TIGR00956 1013 PAEWMLEVIGAAPGAHA-NQDYHE----------VWRNSSEYQAVK--------NELD-----RLEAELSKAED-D-NDP 1066 (1394)
T ss_pred HHHHHHHHhhcccccch-hccHHH----------HHhcCHHHHHHH--------HHHH-----HhhcccccCcc-c-ccc
Confidence 99999999864321100 000000 011110000000 0000 00000000000 0 001
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHH-hhcchhHHHHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 007952 317 SPKRNWGASWIQQYTILFRRGIKE-HRHDYFSWLRITQVLATAVILGLLWWQSDSKSPKGLEDQAGLLFFIAVFWSFFPI 395 (583)
Q Consensus 317 ~~~~~~~~s~~~q~~~l~~R~~~~-~r~~~~~~~r~~~~~~~~li~G~lf~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~ 395 (583)
....++.+||++|+++|++|++++ +|++.+.+.|+++.+++|+++|++||++++ ++.++++|.|++|+.+++.++. +
T Consensus 1067 ~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~-~~~~i~~~~g~~f~~~~~~~~~-~ 1144 (1394)
T TIGR00956 1067 DALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGT-SLQGLQNQMFAVFMATVLFNPL-I 1144 (1394)
T ss_pred ccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHHHHHHHH-H
Confidence 122457889999999999999986 799889999999999999999999999975 5789999999999988766554 3
Q ss_pred HHHHHHHHHhhHHH-HHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCChHH-------HHHHHHHHH
Q 007952 396 FTAIFTFPQERAML-SKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGP-------FFLSMLTVF 467 (583)
Q Consensus 396 ~~~i~~~~~er~v~-~rE~~~~~Y~~~ay~la~~l~~lP~~~~~~~~~~~i~Y~~~gl~~~~~~-------f~~~~~~~~ 467 (583)
...++.|+.||.+| +|||++|+|++++|++|++++|+|+.++.+++|++|+|||+|+++++.. |++|+++++
T Consensus 1145 ~~~~~~f~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~~~f~~~~~~~~ 1224 (1394)
T TIGR00956 1145 QQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLST 1224 (1394)
T ss_pred HHhhhhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCcccccccccchHHHHHHHHH
Confidence 46778899999886 8999999999999999999999999999999999999999999988765 999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcccC--CCccchhhhhccCHHHHHHHHHHHHHcCCCCCC--
Q 007952 468 LSIVAAQGLGLAIGAILMDLKKATTLASVTIMTFMLAGGYFVQ--EVPVFISWIRYMSFNFHTYKILLKIQYADISPI-- 543 (583)
Q Consensus 468 l~~~~~~~~g~~i~~~~~~~~~A~~~~~~~~~~~~l~~Gf~i~--~ip~~~~Wl~yis~~~ya~~~l~~~ef~~~~~~-- 543 (583)
+..++++++|+++++++||..+|+.+++++++++++|+||+++ +||.||+|++|+||++|++++++.|||.+.+..
T Consensus 1225 ~~~~~~~s~g~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~~~~w~~~~sp~~y~~~~l~~~~~~~~~~~C~ 1304 (1394)
T TIGR00956 1225 MFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFTYLVQALLSTGLADVPVTCK 1304 (1394)
T ss_pred HHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhccccCChhHCcHHHhHHHhcCHHHHHHHHHHHHHcCCCeeecC
Confidence 9999999999999999999999999999999999999999997 899999999999999999999999999874310
Q ss_pred --------------------------------------C------C--------CcccCcchhhHHHHHHHHHHHHHHHH
Q 007952 544 --------------------------------------V------N--------GMRTDSGFREVCALVAMVFGYRLLAY 571 (583)
Q Consensus 544 --------------------------------------~------~--------g~~~~~~~~~~~~l~~~~~~~~~l~~ 571 (583)
+ + |+..++.|+|+++++++++++ ++++
T Consensus 1305 ~~e~~~f~pp~~~tC~~y~~~~~~~~~G~l~~~~a~~~C~yC~~~~~~~~l~~~~~~~~~~w~~~~i~~~~~~~~-~~~~ 1383 (1394)
T TIGR00956 1305 VKELLTFNPPSGQTCGEYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFLEPISSKYSGRWRNFGIFIAFIFFN-IIAT 1383 (1394)
T ss_pred ccccceecCCCCCCHHHHHHHHHhhCCcEeeCCCCCCCCCcCCCCCHHHHHHHcCCcccccccchhhhhHHHHHH-HHHH
Confidence 0 0 122345588999999999888 8999
Q ss_pred HHHHHhh
Q 007952 572 LSLRKMK 578 (583)
Q Consensus 572 ~~L~~~~ 578 (583)
++|++..
T Consensus 1384 ~~l~~~~ 1390 (1394)
T TIGR00956 1384 VFFYWLA 1390 (1394)
T ss_pred HhhheEE
Confidence 9997754
No 8
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.1e-93 Score=809.54 Aligned_cols=549 Identities=29% Similarity=0.499 Sum_probs=467.4
Q ss_pred CccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCC-ccccccEEEEccCCCCCCCC
Q 007952 3 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-KSLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 3 ~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~-~~~~~~i~yv~Q~~~~~~~l 81 (583)
.++.+++|+|||+.++||.++||||+||||||||||+|+||...+..+|+|.+||.|.+ +.++|.+|||.|+|.|.|.+
T Consensus 800 qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~ 879 (1391)
T KOG0065|consen 800 QGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPEL 879 (1391)
T ss_pred cccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCccc
Confidence 34678999999999999999999999999999999999999877778999999999988 66889999999999999999
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCC-CEEEEeCCC
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINP-SLLFLDEPT 160 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p-~illLDEPt 160 (583)
||||.|.|+|.+|+|...+.+++.+.|+++++.++|++++|..||... +|||.+||||++||.+|+.|| .||||||||
T Consensus 880 TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G-~GLs~eQRKrLTIgVELvA~P~~ilFLDEPT 958 (1391)
T KOG0065|consen 880 TVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPG-SGLSTEQRKRLTIGVELVANPSSILFLDEPT 958 (1391)
T ss_pred chHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCC-CCCCHHHhceeeEEEEEecCCceeEEecCCC
Confidence 999999999999999999999999999999999999999999999766 999999999999999999999 899999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcC-CeEEEEcChh----hHHHHHHhcC-CCCCCC
Q 007952 161 SGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK-GSLLYFGKAS----EAMAYFSSIG-CSPQIA 234 (583)
Q Consensus 161 sgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~-G~iv~~G~~~----~~~~~f~~~g-~~~~~~ 234 (583)
||||+.++..|++.+|++++.|+||+||+|||+.++++.||++++|++ |++||.||.. .+++||+++| .+||+.
T Consensus 959 SGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~~li~YFes~~~~~~~~~ 1038 (1391)
T KOG0065|consen 959 SGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSSKLIEYFESIGGVKCISD 1038 (1391)
T ss_pred CCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccHHHHHHHHhcCCccCCCC
Confidence 999999999999999999999999999999999999999999999986 6999999975 4677999987 789888
Q ss_pred CChHHHHHHhhcCCCCCCCCCchhhhhhhcccccccccCCCCChhhHHHHHHHHHHHhhhHHHHhhhcCCCCCcHHHhhh
Q 007952 235 MNPAEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENEKKKLMAPIPLDEEIKAK 314 (583)
Q Consensus 235 ~npad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (583)
.|||||++|+++..... + ...+.++.|+.++. |++..+ .-++..++.+. ...
T Consensus 1039 ~NPA~~mLevi~~~~~~-----~------~~~D~a~~w~~S~e-----------~k~~~e--~v~~l~~~~~~----~~~ 1090 (1391)
T KOG0065|consen 1039 ENPAEWMLEVIGAGAEA-----S------LSVDFAEIWKNSEE-----------YKRNKE--LVKELSQPPPG----FST 1090 (1391)
T ss_pred CChHHHHHhhccccccc-----c------cCccHHHHHhccHH-----------HHHHHH--HHHHHhcCCcc----CCc
Confidence 89999999998642111 0 00011111211111 111111 11112222221 111
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHHH-hhcchhHHHHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHHHHHHHH
Q 007952 315 VSSPKRNWGASWIQQYTILFRRGIKE-HRHDYFSWLRITQVLATAVILGLLWWQSDSKSPKGLEDQAGLLFFIAVFWSFF 393 (583)
Q Consensus 315 ~~~~~~~~~~s~~~q~~~l~~R~~~~-~r~~~~~~~r~~~~~~~~li~G~lf~~~~~~~~~~~~~~~g~lf~~~~~~~~~ 393 (583)
....++++..|+|.|++.+++|++.. ||+|.+.++|++..++.||++|+.||+.+ ++..++||..|++|+.+++.+-.
T Consensus 1091 ~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g-~~~q~lqn~m~a~yma~v~~~~~ 1169 (1391)
T KOG0065|consen 1091 DLEFKTRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKVG-HNVQGLQNAMGAAYMATVFSGPN 1169 (1391)
T ss_pred ccccccccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeecC-CcHHHHHHHHHHHHHHHHHhhhh
Confidence 22345668899999999999999875 89999999999999999999999999998 56889999999999988765433
Q ss_pred HHHHHHHHHHHhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCChHHHHHHHHHHHHHHHHH
Q 007952 394 PIFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAA 473 (583)
Q Consensus 394 ~~~~~i~~~~~er~v~~rE~~~~~Y~~~ay~la~~l~~lP~~~~~~~~~~~i~Y~~~gl~~~~~~f~~~~~~~~l~~~~~ 473 (583)
..-...+.+..||.+++||+++|+||+.+|++|++++|+|+.++++++|.++.|+++|+..++.+|++|++.++++.++.
T Consensus 1170 ~~~~~~~~v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~~~~~f~~~~~~f~lYf 1249 (1391)
T KOG0065|consen 1170 NNQLQQPAVATERLYEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWTASKFFWFLLFMFIFFLYF 1249 (1391)
T ss_pred hhhhhhhHHhhhhhheeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchhhHHHHHHHHHHHHHHHHHH
Confidence 22233466678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcccC--CCccchhhhhccCHHHHHHHHHHHHHcCCCCCCC-------
Q 007952 474 QGLGLAIGAILMDLKKATTLASVTIMTFMLAGGYFVQ--EVPVFISWIRYMSFNFHTYKILLKIQYADISPIV------- 544 (583)
Q Consensus 474 ~~~g~~i~~~~~~~~~A~~~~~~~~~~~~l~~Gf~i~--~ip~~~~Wl~yis~~~ya~~~l~~~ef~~~~~~~------- 544 (583)
+.+|+++.+++||.++|..+++.+..++.+|+|+++| .||.||+||+|+||+.|-.++++..+++|.+..+
T Consensus 1250 ~~~Gmm~~s~tPn~~~Aav~~s~~~s~~~~F~G~l~p~~~iP~fW~wmy~lsP~ty~l~gli~~~~~d~~v~c~~~e~~~ 1329 (1391)
T KOG0065|consen 1250 TTLGMMLVSLTPNLQTAAVIASLFFSFWNLFSGFLQPRSLIPKFWIWMYYLSPVTYTLEGLISSQLGDVEVTCEDSEMNY 1329 (1391)
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHhcccccccccccceeeeeeecCcHHHHHHHHHHHHhCCCceeeecCCccc
Confidence 9999999999999999999999999999999999997 7999999999999999999999999998754321
Q ss_pred ----CCcc----------------cCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 007952 545 ----NGMR----------------TDSGFREVCALVAMVFGYRLLAYLSLRKMKLHF 581 (583)
Q Consensus 545 ----~g~~----------------~~~~~~~~~~l~~~~~~~~~l~~~~L~~~~~~~ 581 (583)
.|.. .+......++..++.+++.+++.+.+++.++.+
T Consensus 1330 ~~pp~g~tcge~m~~~~~~~~Gy~~n~~a~~~c~~c~y~v~~~~l~~f~~~y~~~wr 1386 (1391)
T KOG0065|consen 1330 FDPPSGQTCGEFMEDFFGEGTGYLHNPLATTACVYCAYTVADAFLAAFNIKYLNFWR 1386 (1391)
T ss_pred cCCCCCcCHHHHHHHHhccCcceeccCcceeEEEEeeeehHHHHHHHHHHHHHHHHH
Confidence 2221 111112345666788999999999999987654
No 9
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.7e-87 Score=759.73 Aligned_cols=554 Identities=30% Similarity=0.504 Sum_probs=463.2
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCC-CcccEEEECCccCCccc-cccEEEEccCCCCCCCCCH
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYSKSL-KSKIGFVTQDDVLFPHLTV 83 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~-~~~G~I~~~g~~~~~~~-~~~i~yv~Q~~~~~~~lTv 83 (583)
...+|+|+|+-++||+++.++||+||||||||++|+|.+... ...|+|.+||++.++.. ++.++|+.|+|.|+|.|||
T Consensus 127 ~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTV 206 (1391)
T KOG0065|consen 127 KIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTV 206 (1391)
T ss_pred cceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEE
Confidence 457999999999999999999999999999999999976542 24679999999886533 5779999999999999999
Q ss_pred HHHHHHHHHcCCCCC----CCHHHHHH-HHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeC
Q 007952 84 KETLTYAALLRLPNT----LTKQQKEK-RAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 158 (583)
Q Consensus 84 ~e~l~~~~~~~~~~~----~~~~~~~~-~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDE 158 (583)
+|+|.|+++++.+.. .++.++.+ ..+.+++.+||++|+||++||..+|++||||||||++|.+++.+|+++++||
T Consensus 207 reTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De 286 (1391)
T KOG0065|consen 207 RETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDE 286 (1391)
T ss_pred eehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeec
Confidence 999999999998732 23333332 5778999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHHHHHhcCCCCCCCCCh
Q 007952 159 PTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNP 237 (583)
Q Consensus 159 PtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~~g~~~~~~~np 237 (583)
+|+|||+.++.++++.||++++. +.|.++++|||+++++++||+|++|.+|+++|+||.+++++||+++|+.||+..++
T Consensus 287 ~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~~ 366 (1391)
T KOG0065|consen 287 ITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKGT 366 (1391)
T ss_pred ccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccCH
Confidence 99999999999999999999875 88999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCCCCCchhhhhhhcccccccccCCCCChhhHHHHHHHHHHHhhh-HHHHhhhcCCCCCcHHHhhhcC
Q 007952 238 AEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVA-ENEKKKLMAPIPLDEEIKAKVS 316 (583)
Q Consensus 238 ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 316 (583)
|||+.++++..... .+ ..++ + ........++..+ .+.+... .....+... +.++..+....
T Consensus 367 ADfLt~vts~k~~~--~~--~~~~-----~---~~~~~~~~~ef~~----~~~~s~~~~~l~~~l~~--~~~~~k~~~~a 428 (1391)
T KOG0065|consen 367 ADFLTEVTSKKDQE--QY--WNKR-----S---KPYPYTSVSEFAE----YFLNSEDYAKLKKELSK--PYDKSKKHKAA 428 (1391)
T ss_pred HHHHHHhhcCcccc--cc--cccc-----C---CCcccCCHHHHHH----HHhcchhhHHHHHHhcc--hhhhhhccchh
Confidence 99999998721110 00 0000 0 0000011122222 2211100 001111111 11111112223
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHh-hcchhHHHHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 007952 317 SPKRNWGASWIQQYTILFRRGIKEH-RHDYFSWLRITQVLATAVILGLLWWQSDSKSPKGLEDQAGLLFFIAVFWSFFPI 395 (583)
Q Consensus 317 ~~~~~~~~s~~~q~~~l~~R~~~~~-r~~~~~~~r~~~~~~~~li~G~lf~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~ 395 (583)
...+.|..+.|.|++.|++|.+... ||..++..+..+.+++|+++|++||+.+..+..+.+.|.|++||.+++.+|.+
T Consensus 429 l~s~~y~v~~~~qvk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~~t~~~~~~~~~~lffsll~~~f~~- 507 (1391)
T KOG0065|consen 429 LVSSKYSVPYWEQVKACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPMSTTSGGYSRGGALFFALLFNLFNG- 507 (1391)
T ss_pred hcCCceeccHHHHHHHHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccCcccccchhhhhHHHHHHHHHHHHh-
Confidence 4556788999999999999999865 55556678999999999999999999973445678899999999999987766
Q ss_pred HHHHHHHHHhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCChHHHHHHHHHHHHHHHHHHH
Q 007952 396 FTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQG 475 (583)
Q Consensus 396 ~~~i~~~~~er~v~~rE~~~~~Y~~~ay~la~~l~~lP~~~~~~~~~~~i~Y~~~gl~~~~~~f~~~~~~~~l~~~~~~~ 475 (583)
++.++...+.||||+|||...+|+++||.++.+++++|+.++.+++|.+|+||++|+++++++||.++++++++.+|+.+
T Consensus 508 laEi~~~~~~~pv~~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~ 587 (1391)
T KOG0065|consen 508 LAEIALTFQRLPVFYKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSG 587 (1391)
T ss_pred HHHHHHHHhhcchHHHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHH
Confidence 67888889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcccC--CCccchhhhhccCHHHHHHHHHHHHHcCCCCCCC---------
Q 007952 476 LGLAIGAILMDLKKATTLASVTIMTFMLAGGYFVQ--EVPVFISWIRYMSFNFHTYKILLKIQYADISPIV--------- 544 (583)
Q Consensus 476 ~g~~i~~~~~~~~~A~~~~~~~~~~~~l~~Gf~i~--~ip~~~~Wl~yis~~~ya~~~l~~~ef~~~~~~~--------- 544 (583)
+++++++++++...|++++++.++...+++||+|| +||+||+|++|+||..||||+++.|||.+....+
T Consensus 588 lFr~ia~l~~t~~~An~~g~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n 667 (1391)
T KOG0065|consen 588 LFRFIASLSRTLSIANLIGGILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDN 667 (1391)
T ss_pred HHHHHHHhcchHHHHhhHhHHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccc
Confidence 99999999999999999999999999999999998 8999999999999999999999999998732110
Q ss_pred --------------CC--------c-------ccCcchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 007952 545 --------------NG--------M-------RTDSGFREVCALVAMVFGYRLLAYLSLRKMK 578 (583)
Q Consensus 545 --------------~g--------~-------~~~~~~~~~~~l~~~~~~~~~l~~~~L~~~~ 578 (583)
.| + +..+.|+++++++|+.++|.++.-+++-|.+
T Consensus 668 ~~~~~~~c~~~~~~~G~~~v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~ 730 (1391)
T KOG0065|consen 668 ISIENKVCAATGATLGNDYVSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLK 730 (1391)
T ss_pred cccccccchhhccccCceEEecccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcC
Confidence 11 1 1234588999999999999999999998877
No 10
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.6e-53 Score=401.10 Aligned_cols=210 Identities=34% Similarity=0.584 Sum_probs=190.3
Q ss_pred CCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCC-----ccccccEEEEccCCC
Q 007952 2 TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-----KSLKSKIGFVTQDDV 76 (583)
Q Consensus 2 ~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~-----~~~~~~i~yv~Q~~~ 76 (583)
++.++..+|+|||+++++||+++|+||||||||||||||+++. .+++|+|.++|+++. ...|+++|+|+|+.+
T Consensus 10 K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE--~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fn 87 (240)
T COG1126 10 KSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLE--EPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFN 87 (240)
T ss_pred EEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCc--CCCCceEEECCEeccchhhHHHHHHhcCeeccccc
Confidence 3567889999999999999999999999999999999999954 367999999997653 136889999999999
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEE
Q 007952 77 LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFL 156 (583)
Q Consensus 77 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illL 156 (583)
+||++||.||+..+...- ...++++.++++.++|+.+||.+.+|. ++.+|||||||||+|||||+.+|+++++
T Consensus 88 LFPHlTvleNv~lap~~v--~~~~k~eA~~~A~~lL~~VGL~~ka~~-----yP~qLSGGQqQRVAIARALaM~P~vmLF 160 (240)
T COG1126 88 LFPHLTVLENVTLAPVKV--KKLSKAEAREKALELLEKVGLADKADA-----YPAQLSGGQQQRVAIARALAMDPKVMLF 160 (240)
T ss_pred ccccchHHHHHHhhhHHH--cCCCHHHHHHHHHHHHHHcCchhhhhh-----CccccCcHHHHHHHHHHHHcCCCCEEee
Confidence 999999999999875421 246788999999999999999998876 5889999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 157 DEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 157 DEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|||||+|||+...++++.+++|+++|.|.|++||+... ..+.+|||++|++|+++..|+|++..
T Consensus 161 DEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~F-Ar~VadrviFmd~G~iie~g~p~~~f 224 (240)
T COG1126 161 DEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGF-AREVADRVIFMDQGKIIEEGPPEEFF 224 (240)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHH-HHHhhheEEEeeCCEEEEecCHHHHh
Confidence 99999999999999999999999999999999999654 67889999999999999999998863
No 11
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.6e-49 Score=382.52 Aligned_cols=224 Identities=29% Similarity=0.539 Sum_probs=198.4
Q ss_pred CccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCC
Q 007952 3 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLF 78 (583)
Q Consensus 3 ~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~ 78 (583)
..+++.+++|+|++|++||+++++|||||||||+||+|+++.. +++|+|++||+++.+ ++|++||||-|+-.+|
T Consensus 10 ~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLie--pt~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLF 87 (309)
T COG1125 10 RYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIE--PTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLF 87 (309)
T ss_pred hcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccC--CCCceEEECCeecccCCHHHHHHhhhhhhhhcccC
Confidence 3567899999999999999999999999999999999998653 679999999999864 5799999999999999
Q ss_pred CCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeC
Q 007952 79 PHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 158 (583)
Q Consensus 79 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDE 158 (583)
|++||.||+.+...+. .+++++.+++++|+++.+||+.. ...++++++|||||+|||.+||||+.+|++|++||
T Consensus 88 Ph~Tv~eNIa~VP~L~---~w~k~~i~~r~~ELl~lvgL~p~---~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDE 161 (309)
T COG1125 88 PHLTVAENIATVPKLL---GWDKERIKKRADELLDLVGLDPS---EYADRYPHELSGGQQQRVGVARALAADPPILLMDE 161 (309)
T ss_pred CCccHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHhCCCHH---HHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecC
Confidence 9999999999876653 46889999999999999999741 12345799999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHHHHHhcCCCCCCCCCh
Q 007952 159 PTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNP 237 (583)
Q Consensus 159 PtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~~g~~~~~~~np 237 (583)
|+++|||.++.++.+.++++.++ |+|||++|||.. |.++++|||.+|++|+++..++|++++. ||
T Consensus 162 PFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDid-EA~kLadri~vm~~G~i~Q~~~P~~il~-------------~P 227 (309)
T COG1125 162 PFGALDPITRKQLQEEIKELQKELGKTIVFVTHDID-EALKLADRIAVMDAGEIVQYDTPDEILA-------------NP 227 (309)
T ss_pred CccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHH-HHHhhhceEEEecCCeEEEeCCHHHHHh-------------Cc
Confidence 99999999999999999999865 999999999965 6789999999999999999999999874 45
Q ss_pred H-HHHHHhhcCC
Q 007952 238 A-EFLLDLANGN 248 (583)
Q Consensus 238 a-d~~~~~~~~~ 248 (583)
| ||+-+....+
T Consensus 228 an~FV~~f~g~~ 239 (309)
T COG1125 228 ANDFVEDFFGES 239 (309)
T ss_pred cHHHHHHHhccc
Confidence 4 5666665443
No 12
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=2.7e-49 Score=406.27 Aligned_cols=210 Identities=35% Similarity=0.601 Sum_probs=189.9
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc---cccccEEEEccCCCCCCCCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---SLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~---~~~~~i~yv~Q~~~~~~~lT 82 (583)
++.+|+||||++++||++|++||||||||||+|+|+|... +++|+|.++|.+..+ ..++++||++|++.+++.+|
T Consensus 17 ~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~--p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT 94 (293)
T COG1131 17 DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLK--PTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELT 94 (293)
T ss_pred CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEEcCEeCccCHHHHHhheEEEccCCCCCcccc
Confidence 5789999999999999999999999999999999999764 579999999988754 46788999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCC
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 162 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsg 162 (583)
|+|+|.|.+.++.+. .+..+++++++++.+||.+..++ .+++||+|||||++||+||+++|+++||||||+|
T Consensus 95 ~~e~l~~~~~l~~~~---~~~~~~~~~~~l~~~~L~~~~~~-----~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~G 166 (293)
T COG1131 95 VRENLEFFARLYGLS---KEEAEERIEELLELFGLEDKANK-----KVRTLSGGMKQRLSIALALLHDPELLILDEPTSG 166 (293)
T ss_pred HHHHHHHHHHHhCCC---hhHHHHHHHHHHHHcCCchhhCc-----chhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcC
Confidence 999999999887543 24566789999999999985444 4679999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHCC-cEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHHHHHh
Q 007952 163 LDSTTALRIVQMLQDIAEAG-KTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSS 226 (583)
Q Consensus 163 LD~~~~~~i~~~l~~l~~~g-~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~ 226 (583)
|||.++.++.+.|++++++| +||+++||++. ++.++||+|++|++|++++.|+++++...+..
T Consensus 167 LDp~~~~~~~~~l~~l~~~g~~tvlissH~l~-e~~~~~d~v~il~~G~~~~~g~~~~l~~~~~~ 230 (293)
T COG1131 167 LDPESRREIWELLRELAKEGGVTILLSTHILE-EAEELCDRVIILNDGKIIAEGTPEELKEKFGG 230 (293)
T ss_pred CCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHH-HHHHhCCEEEEEeCCEEEEeCCHHHHHHhhcc
Confidence 99999999999999999987 89999999975 58889999999999999999999998776554
No 13
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-49 Score=393.89 Aligned_cols=205 Identities=29% Similarity=0.474 Sum_probs=187.6
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-------cccccEEEEccCCCCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-------SLKSKIGFVTQDDVLF 78 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-------~~~~~i~yv~Q~~~~~ 78 (583)
...+|+|||++|++||++||+|.||||||||+|+|+++. .|++|+|.++|+++.. ..|++||+++|+..++
T Consensus 18 ~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le--~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLL 95 (339)
T COG1135 18 TVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLE--RPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLL 95 (339)
T ss_pred ceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccC--CCCCceEEEcCEecccCChHHHHHHHhhccEEecccccc
Confidence 357999999999999999999999999999999999854 3679999999987642 3678999999999999
Q ss_pred CCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeC
Q 007952 79 PHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 158 (583)
Q Consensus 79 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDE 158 (583)
...||.||+.|...+. ..++++.++||.++++.+||++..+. ++.+|||||||||+|||||+.+|+||++||
T Consensus 96 ssrTV~~NvA~PLeia---g~~k~ei~~RV~elLelVgL~dk~~~-----yP~qLSGGQKQRVaIARALa~~P~iLL~DE 167 (339)
T COG1135 96 SSRTVFENVAFPLELA---GVPKAEIKQRVAELLELVGLSDKADR-----YPAQLSGGQKQRVAIARALANNPKILLCDE 167 (339)
T ss_pred ccchHHhhhhhhHhhc---CCCHHHHHHHHHHHHHHcCChhhhcc-----CchhcCcchhhHHHHHHHHhcCCCEEEecC
Confidence 9999999999997764 36799999999999999999987775 688999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 159 PTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 159 PtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|||+|||.+...|+++|+++.++ |.||+++||++ +.+.+.||||.+|++|++++.|+..++.
T Consensus 168 aTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm-~Vvk~ic~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 168 ATSALDPETTQSILELLKDINRELGLTIVLITHEM-EVVKRICDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred ccccCChHHHHHHHHHHHHHHHHcCCEEEEEechH-HHHHHHhhhheEeeCCEEEEeccHHHhh
Confidence 99999999999999999999765 99999999996 4688899999999999999999998874
No 14
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=2.6e-49 Score=379.47 Aligned_cols=210 Identities=33% Similarity=0.541 Sum_probs=190.7
Q ss_pred CccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-------cccccEEEEccCC
Q 007952 3 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-------SLKSKIGFVTQDD 75 (583)
Q Consensus 3 ~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-------~~~~~i~yv~Q~~ 75 (583)
+.+++.|++|+|++|++||+++||||||+|||||||+|.|.+. |++|+|+++|+++.. +.++++|+++|+.
T Consensus 17 ~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~--P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~g 94 (263)
T COG1127 17 SFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLR--PDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQG 94 (263)
T ss_pred ecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCC--CCCCeEEEcCcchhccCHHHHHHHHhheeEEeecc
Confidence 5678999999999999999999999999999999999999764 679999999998742 3578899999999
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCccCcccChHHHHHHHHHHHHHhCCCEE
Q 007952 76 VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC-QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLL 154 (583)
Q Consensus 76 ~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~il 154 (583)
.+|..|||+||+.|..+ ....++++..++.+..-|+.+||... .+ .++.+|||||+||+++|||++.||+++
T Consensus 95 ALFssltV~eNVafplr--e~~~lp~~~i~~lv~~KL~~VGL~~~~~~-----~~PsELSGGM~KRvaLARAialdPell 167 (263)
T COG1127 95 ALFSSLTVFENVAFPLR--EHTKLPESLIRELVLMKLELVGLRGAAAD-----LYPSELSGGMRKRVALARAIALDPELL 167 (263)
T ss_pred ccccccchhHhhheehH--hhccCCHHHHHHHHHHHHHhcCCChhhhh-----hCchhhcchHHHHHHHHHHHhcCCCEE
Confidence 99999999999999754 33457888889999999999999875 44 368999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 155 FLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
|+||||+||||.++..+.++++++.+. |.|++++|||.. +++..||++++|.+|++++.|+++++.+
T Consensus 168 ~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~-s~~~i~Drv~~L~~gkv~~~Gt~~el~~ 235 (263)
T COG1127 168 FLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLD-SLLTIADRVAVLADGKVIAEGTPEELLA 235 (263)
T ss_pred EecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChH-HHHhhhceEEEEeCCEEEEeCCHHHHHh
Confidence 999999999999999999999999876 999999999965 5889999999999999999999999864
No 15
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=4.9e-49 Score=389.74 Aligned_cols=210 Identities=32% Similarity=0.480 Sum_probs=184.7
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCC----ccccccEEEEccCCCCCC
Q 007952 4 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSLKSKIGFVTQDDVLFP 79 (583)
Q Consensus 4 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~----~~~~~~i~yv~Q~~~~~~ 79 (583)
++++.+|+|+||++++||+++|+||||||||||||+|+|.++ +.+|+|.++|+++. +++.++++||||.....+
T Consensus 12 y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~--p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~ 89 (258)
T COG1120 12 YGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK--PKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPF 89 (258)
T ss_pred ECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCC--CCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCC
Confidence 467899999999999999999999999999999999999764 67899999999875 356788999999998888
Q ss_pred CCCHHHHHHHHHHcCCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeC
Q 007952 80 HLTVKETLTYAALLRLPN-TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 158 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDE 158 (583)
.+||+|.+.++..-.... ....+++++.+++.++.+|+.+.+++. +.+|||||||||.|||||+++|++|+|||
T Consensus 90 ~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~-----~~~LSGGerQrv~iArALaQ~~~iLLLDE 164 (258)
T COG1120 90 GLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRP-----VDELSGGERQRVLIARALAQETPILLLDE 164 (258)
T ss_pred CcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCc-----ccccChhHHHHHHHHHHHhcCCCEEEeCC
Confidence 999999998873221111 112344556799999999999998865 57999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 159 PTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 159 PtsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|||.||..++.++++.++++++ +|+|||+++||++. ..++||++++|++|+++..|+|++++
T Consensus 165 PTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~-A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 165 PTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNL-AARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred CccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhCCEEEEEECCeEEeecCcchhc
Confidence 9999999999999999999995 59999999999875 67999999999999999999998875
No 16
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=8.7e-48 Score=373.75 Aligned_cols=194 Identities=35% Similarity=0.569 Sum_probs=170.9
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc--------cccccEEEEccCCCCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--------SLKSKIGFVTQDDVLF 78 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~--------~~~~~i~yv~Q~~~~~ 78 (583)
..+|+++|++|++||+++|+|||||||||||++|.|... |++|+|.++|+++.. ..++.||||+|+..+.
T Consensus 18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~--pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl 95 (226)
T COG1136 18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDK--PTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLL 95 (226)
T ss_pred eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCC
Confidence 579999999999999999999999999999999999653 489999999987642 1356799999999999
Q ss_pred CCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeC
Q 007952 79 PHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 158 (583)
Q Consensus 79 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDE 158 (583)
|++||+||+.+++.+.. .+..+.+++++++++.+||++..+. .++.+|||||||||+|||||+.+|++++.||
T Consensus 96 ~~ltv~ENv~lpl~~~~---~~~~~~~~~~~~l~~~lgl~~~~~~----~~p~eLSGGqqQRVAIARAL~~~P~iilADE 168 (226)
T COG1136 96 PDLTVLENVELPLLIAG---KSAGRRKRAAEELLEVLGLEDRLLK----KKPSELSGGQQQRVAIARALINNPKIILADE 168 (226)
T ss_pred CCCCHHHHHHhHHHHcC---CChhHHHHHHHHHHHhcCChhhhcc----CCchhcCHHHHHHHHHHHHHhcCCCeEEeeC
Confidence 99999999998775542 2233567778999999999976652 2578999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeE
Q 007952 159 PTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSL 211 (583)
Q Consensus 159 PtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~i 211 (583)
||.+||+.++..|++++++++++ |+|||++|||| ++...|||++.|.+|++
T Consensus 169 PTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~--~lA~~~dr~i~l~dG~~ 220 (226)
T COG1136 169 PTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIELKDGKI 220 (226)
T ss_pred ccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHhCCEEEEEeCCee
Confidence 99999999999999999999865 99999999997 46789999999999983
No 17
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.5e-48 Score=374.10 Aligned_cols=194 Identities=32% Similarity=0.518 Sum_probs=175.4
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCH
Q 007952 4 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTV 83 (583)
Q Consensus 4 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv 83 (583)
.+...+|+|+|++|++||+++|+||||||||||||+|+|... +++|+|.++|+++ ......++||+|++.++|.+||
T Consensus 13 f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~--p~~G~V~~~g~~v-~~p~~~~~~vFQ~~~LlPW~Tv 89 (248)
T COG1116 13 FGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEK--PTSGEVLLDGRPV-TGPGPDIGYVFQEDALLPWLTV 89 (248)
T ss_pred eCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCccc-CCCCCCEEEEeccCcccchhhH
Confidence 345789999999999999999999999999999999999664 6799999999988 4456789999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCC
Q 007952 84 KETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGL 163 (583)
Q Consensus 84 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgL 163 (583)
+||+.++...+. .++++.+++++++|+.+||.+..|. ++++|||||||||+|||||+.+|++|+||||+++|
T Consensus 90 ~~NV~l~l~~~~---~~~~e~~~~a~~~L~~VgL~~~~~~-----~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgAL 161 (248)
T COG1116 90 LDNVALGLELRG---KSKAEARERAKELLELVGLAGFEDK-----YPHQLSGGMRQRVAIARALATRPKLLLLDEPFGAL 161 (248)
T ss_pred Hhhheehhhccc---cchHhHHHHHHHHHHHcCCcchhhc-----CccccChHHHHHHHHHHHHhcCCCEEEEcCCcchh
Confidence 999999876542 4567777899999999999988875 68999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhhcCeEEEEcCC
Q 007952 164 DSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKG 209 (583)
Q Consensus 164 D~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G 209 (583)
|+.++.++.+.|.++.+ .++||+++|||..+ ...++|||++|+++
T Consensus 162 DalTR~~lq~~l~~lw~~~~~TvllVTHdi~E-Av~LsdRivvl~~~ 207 (248)
T COG1116 162 DALTREELQDELLRLWEETRKTVLLVTHDVDE-AVYLADRVVVLSNR 207 (248)
T ss_pred hHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHH-HHhhhCEEEEecCC
Confidence 99999999999999875 48999999999764 66799999999984
No 18
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.6e-48 Score=378.60 Aligned_cols=204 Identities=32% Similarity=0.576 Sum_probs=177.5
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccc-cccEEEEccCC---CCCCCCCH
Q 007952 8 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL-KSKIGFVTQDD---VLFPHLTV 83 (583)
Q Consensus 8 ~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~-~~~i~yv~Q~~---~~~~~lTv 83 (583)
++|+|||+++++|++++|+||||||||||+|+|.|.+. |.+|+|.++|++..+.. +.+||||||.. .-|| +||
T Consensus 18 ~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~--p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP-~tV 94 (254)
T COG1121 18 PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLK--PSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFP-ITV 94 (254)
T ss_pred eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc--CCcceEEEccccccccccCCeEEEcCcccccCCCCC-cCH
Confidence 69999999999999999999999999999999999764 67899999999876543 57899999964 3466 699
Q ss_pred HHHHHHHHHcCCC--CCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 007952 84 KETLTYAALLRLP--NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 161 (583)
Q Consensus 84 ~e~l~~~~~~~~~--~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPts 161 (583)
+|.+..+...+.. ...+ ++.++.++++|+.+|+.+.+|..+| +|||||+|||.|||||+++|++|+|||||+
T Consensus 95 ~d~V~~g~~~~~g~~~~~~-~~d~~~v~~aL~~Vgm~~~~~r~i~-----~LSGGQ~QRV~lARAL~~~p~lllLDEP~~ 168 (254)
T COG1121 95 KDVVLLGRYGKKGWFRRLN-KKDKEKVDEALERVGMEDLRDRQIG-----ELSGGQKQRVLLARALAQNPDLLLLDEPFT 168 (254)
T ss_pred HHHHHccCccccccccccc-HHHHHHHHHHHHHcCchhhhCCccc-----ccCcHHHHHHHHHHHhccCCCEEEecCCcc
Confidence 9999886432221 1123 3447789999999999999998765 899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 162 GLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 162 gLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
|+|+.++..++++|++++++|+||++++||+. .+.++||+|+.| ++++++.|+++++.+
T Consensus 169 gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~-~v~~~~D~vi~L-n~~~~~~G~~~~~~~ 227 (254)
T COG1121 169 GVDVAGQKEIYDLLKELRQEGKTVLMVTHDLG-LVMAYFDRVICL-NRHLIASGPPEEVLT 227 (254)
T ss_pred cCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcH-HhHhhCCEEEEE-cCeeEeccChhhccC
Confidence 99999999999999999999999999999976 488999999999 577899999998754
No 19
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.3e-48 Score=360.10 Aligned_cols=204 Identities=28% Similarity=0.483 Sum_probs=189.1
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc---cccccEEEEccCCCCCCCCCHH
Q 007952 8 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---SLKSKIGFVTQDDVLFPHLTVK 84 (583)
Q Consensus 8 ~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~---~~~~~i~yv~Q~~~~~~~lTv~ 84 (583)
++++||||+++.||+++|+|||||||||+||+|++.+. |++|+|+++|.+..+ ..|++||.++.+..++..||++
T Consensus 16 ~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~--P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~r 93 (245)
T COG4555 16 QAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLI--PDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTAR 93 (245)
T ss_pred hhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhcc--CCCceEEEeecccccChHHHhhhcceecCCcChhhhhhHH
Confidence 48999999999999999999999999999999999775 679999999988753 3688999999888999999999
Q ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCC
Q 007952 85 ETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLD 164 (583)
Q Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD 164 (583)
|||.|.+++. .+.+.+.+++.+++.+.|+|.++.|+++| ++|.|+||||+|||||+++|++++|||||||||
T Consensus 94 Enl~~Fa~L~---~l~~~~~kari~~l~k~l~l~~~~~rRv~-----~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLD 165 (245)
T COG4555 94 ENLKYFARLN---GLSRKEIKARIAELSKRLQLLEYLDRRVG-----EFSTGMKQKVAIARALVHDPSILVLDEPTSGLD 165 (245)
T ss_pred HHHHHHHHHh---hhhhhHHHHHHHHHHHHhChHHHHHHHHh-----hhchhhHHHHHHHHHHhcCCCeEEEcCCCCCcc
Confidence 9999998875 46778889999999999999999998765 899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 165 STTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 165 ~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
..+...+.+.+++++++|++||++||.. +++..+||+|++|++|++++.|+++++..
T Consensus 166 i~~~r~~~dfi~q~k~egr~viFSSH~m-~EvealCDrvivlh~Gevv~~gs~~~l~~ 222 (245)
T COG4555 166 IRTRRKFHDFIKQLKNEGRAVIFSSHIM-QEVEALCDRVIVLHKGEVVLEGSIEALDA 222 (245)
T ss_pred HHHHHHHHHHHHHhhcCCcEEEEecccH-HHHHHhhheEEEEecCcEEEcCCHHHHHH
Confidence 9999999999999999999999999995 57888999999999999999999987654
No 20
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.4e-47 Score=393.03 Aligned_cols=203 Identities=29% Similarity=0.515 Sum_probs=188.1
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc--cccccEEEEccCCCCCCCCCHHHH
Q 007952 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKSKIGFVTQDDVLFPHLTVKET 86 (583)
Q Consensus 9 iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~--~~~~~i~yv~Q~~~~~~~lTv~e~ 86 (583)
+|+|+|+++++||+++|+||||||||||||+|+|+.. +++|+|.++|+++++ ..+|.|++|+|+..+||+|||+||
T Consensus 18 ~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~--~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~N 95 (338)
T COG3839 18 VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEE--PTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYEN 95 (338)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHH
Confidence 9999999999999999999999999999999999653 689999999999875 346889999999999999999999
Q ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHH
Q 007952 87 LTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDST 166 (583)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~ 166 (583)
+.|+.+.+ ..++++.+++|+++.+.|+|++..|++ +++|||||||||+|||||+.+|+++++|||+|+||+.
T Consensus 96 iaf~Lk~~---~~~k~ei~~rV~eva~~L~l~~lL~r~-----P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~ 167 (338)
T COG3839 96 IAFGLKLR---GVPKAEIDKRVKEVAKLLGLEHLLNRK-----PLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAK 167 (338)
T ss_pred hhhhhhhC---CCchHHHHHHHHHHHHHcCChhHHhcC-----cccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHH
Confidence 99998765 357889999999999999999988864 7899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 167 TALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 167 ~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
.+..+...|+++.++ |.|+|.+|||.. |+..++|||.+|++|++...|+|.++.+
T Consensus 168 lR~~mr~ei~~lh~~l~~T~IYVTHDq~-EAmtladri~Vm~~G~i~Q~g~p~ely~ 223 (338)
T COG3839 168 LRVLMRSEIKKLHERLGTTTIYVTHDQV-EAMTLADRIVVMNDGRIQQVGTPLELYE 223 (338)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEcCCHH-HHHhhCCEEEEEeCCeeeecCChHHHhh
Confidence 999999999999875 899999999965 6789999999999999999999999854
No 21
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=8.7e-48 Score=396.64 Aligned_cols=223 Identities=28% Similarity=0.480 Sum_probs=197.8
Q ss_pred CccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc--cccccEEEEccCCCCCCC
Q 007952 3 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKSKIGFVTQDDVLFPH 80 (583)
Q Consensus 3 ~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~--~~~~~i~yv~Q~~~~~~~ 80 (583)
+.++..+++|+|++|++||+++|+||||||||||||+|+|... +++|+|.++|++++. ..+|.||+|+|+-.+||+
T Consensus 14 ~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~--p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPH 91 (352)
T COG3842 14 SFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQ--PSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPH 91 (352)
T ss_pred ecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCCChhhcccceeecCcccCCC
Confidence 3567889999999999999999999999999999999999653 689999999999864 457889999999999999
Q ss_pred CCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCC
Q 007952 81 LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPT 160 (583)
Q Consensus 81 lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPt 160 (583)
|||+||+.|+.+++ ....+++.+++|+++++.++|++..+. ++.+|||||||||++||||+.+|++|+||||.
T Consensus 92 ltV~~NVafGLk~~--~~~~~~~i~~rv~e~L~lV~L~~~~~R-----~p~qLSGGQqQRVALARAL~~~P~vLLLDEPl 164 (352)
T COG3842 92 MTVEENVAFGLKVR--KKLKKAEIKARVEEALELVGLEGFADR-----KPHQLSGGQQQRVALARALVPEPKVLLLDEPL 164 (352)
T ss_pred CcHHHHhhhhhhhc--CCCCHHHHHHHHHHHHHHcCchhhhhh-----ChhhhChHHHHHHHHHHHhhcCcchhhhcCcc
Confidence 99999999997633 334567788999999999999987765 57899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHHHHHhcCCCCCCCCChHH
Q 007952 161 SGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAE 239 (583)
Q Consensus 161 sgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~~g~~~~~~~npad 239 (583)
|+||..-+.++...|+++.++ |.|.|++|||.. |...++|||.+|++|++...|+|+++. ..|...-.||
T Consensus 165 SaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqe-EAl~msDrI~Vm~~G~I~Q~gtP~eiY--------~~P~~~fVA~ 235 (352)
T COG3842 165 SALDAKLREQMRKELKELQRELGITFVYVTHDQE-EALAMSDRIAVMNDGRIEQVGTPEEIY--------ERPATRFVAD 235 (352)
T ss_pred cchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHhhhccceEEccCCceeecCCHHHHh--------hCcchHHHHH
Confidence 999999999999999999765 999999999965 678999999999999999999999973 3455445577
Q ss_pred HHHH
Q 007952 240 FLLD 243 (583)
Q Consensus 240 ~~~~ 243 (583)
|+-+
T Consensus 236 FiG~ 239 (352)
T COG3842 236 FIGE 239 (352)
T ss_pred HhCc
Confidence 7654
No 22
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-47 Score=365.79 Aligned_cols=211 Identities=30% Similarity=0.507 Sum_probs=184.3
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-------cccccEEEEccCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-------SLKSKIGFVTQDDVL 77 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-------~~~~~i~yv~Q~~~~ 77 (583)
+++++|+|||++|++||+++|+||||||||||||+|+|.. .+++|+|.+||.++.. .+|+++||++|++.+
T Consensus 15 ~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~--d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nL 92 (258)
T COG3638 15 GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLV--DPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNL 92 (258)
T ss_pred CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhccc--CCCcceEEecccchhccchHHHHHHHHhceeEeccCCc
Confidence 7889999999999999999999999999999999999954 3678999999987642 357889999999999
Q ss_pred CCCCCHHHHHHHHHHcCCCC-----CCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCC
Q 007952 78 FPHLTVKETLTYAALLRLPN-----TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPS 152 (583)
Q Consensus 78 ~~~lTv~e~l~~~~~~~~~~-----~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ 152 (583)
.+.+||.||+..+..-+.+. .+..++.+.++-+.|+.+|+.+.+.++ ..+|||||+|||+|||+|+.+|+
T Consensus 93 v~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qr-----a~~LSGGQQQRVaIARaL~Q~pk 167 (258)
T COG3638 93 VPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQR-----ASTLSGGQQQRVAIARALVQQPK 167 (258)
T ss_pred ccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHH-----hccCCcchhHHHHHHHHHhcCCC
Confidence 99999999999875433221 122344556788999999999887765 45899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHHH
Q 007952 153 LLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAY 223 (583)
Q Consensus 153 illLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~ 223 (583)
+++.|||+++|||.+++++|+.|+++++ +|.|+|++.||... ..++|||++-|++|+++|.||++++.+.
T Consensus 168 iILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdl-A~~Y~~Riigl~~G~ivfDg~~~el~~~ 238 (258)
T COG3638 168 IILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDL-AKKYADRIIGLKAGRIVFDGPASELTDE 238 (258)
T ss_pred EEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHH-HHHHHhhheEecCCcEEEeCChhhhhHH
Confidence 9999999999999999999999999985 59999999999754 6789999999999999999999886543
No 23
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5e-47 Score=374.64 Aligned_cols=209 Identities=29% Similarity=0.522 Sum_probs=188.6
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCc---cCCc--cccccEEEEccCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH---PYSK--SLKSKIGFVTQDDVLFP 79 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~---~~~~--~~~~~i~yv~Q~~~~~~ 79 (583)
+...+++|||++|+.||++|++|||||||||||++|+|+.. +++|.|.+||+ +.++ ...++||||+|+..+|+
T Consensus 13 ~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~--p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~ 90 (345)
T COG1118 13 GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLET--PDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFP 90 (345)
T ss_pred ccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCC--CCCceEEECCEeccchhccchhhcceeEEEechhhcc
Confidence 45678999999999999999999999999999999999764 67999999999 4443 23578999999999999
Q ss_pred CCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCC
Q 007952 80 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEP 159 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEP 159 (583)
+|||.||+.|+...+ ....++.+.+.+++++|+.+.|++..+. ++.+|||||||||++||||+.+|++|+||||
T Consensus 91 HmtVa~NIAFGl~~~-~~~p~~~~~r~rv~elL~lvqL~~la~r-----yP~QLSGGQrQRVALARALA~eP~vLLLDEP 164 (345)
T COG1118 91 HMTVADNIAFGLKVR-KERPSEAEIRARVEELLRLVQLEGLADR-----YPAQLSGGQRQRVALARALAVEPKVLLLDEP 164 (345)
T ss_pred cchHHhhhhhccccc-ccCCChhhHHHHHHHHHHHhcccchhhc-----CchhcChHHHHHHHHHHHhhcCCCeEeecCC
Confidence 999999999998766 2334577888999999999999987764 6899999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 160 TSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 160 tsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
+++||..-+.++.+.|+++.++ |.|.+++|||+. +++++||+|++|++|+|...|+++|+.+
T Consensus 165 f~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~e-ea~~ladrvvvl~~G~Ieqvg~p~ev~~ 227 (345)
T COG1118 165 FGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE-EALELADRVVVLNQGRIEQVGPPDEVYD 227 (345)
T ss_pred chhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHH-HHHhhcceEEEecCCeeeeeCCHHHHhc
Confidence 9999999999999999999876 999999999975 6899999999999999999999999843
No 24
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=1.3e-45 Score=382.12 Aligned_cols=207 Identities=29% Similarity=0.438 Sum_probs=184.8
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc---cccccEEEEccCCCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---SLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~---~~~~~i~yv~Q~~~~~~~l 81 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|... +++|+|.++|.++.+ ..++++||++|++.+++.+
T Consensus 18 ~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~--p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~ 95 (306)
T PRK13537 18 GDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTH--PDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDF 95 (306)
T ss_pred CCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEecccchHHHHhcEEEEeccCcCCCCC
Confidence 45789999999999999999999999999999999999653 678999999998753 3467899999999999999
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 161 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPts 161 (583)
||+||+.+.+..+ ..+..+..++++++++.++|.+..++. +++||||||||++||+||+++|++|+|||||+
T Consensus 96 tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~ 167 (306)
T PRK13537 96 TVRENLLVFGRYF---GLSAAAARALVPPLLEFAKLENKADAK-----VGELSGGMKRRLTLARALVNDPDVLVLDEPTT 167 (306)
T ss_pred cHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCc-----hhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCc
Confidence 9999999876543 234455567788999999998877765 46899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 162 GLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 162 gLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
|||+.++..+.+.|++++++|+|||++||++. ++.++||+|++|++|++++.|+++++.+
T Consensus 168 gLD~~~~~~l~~~l~~l~~~g~till~sH~l~-e~~~~~d~i~il~~G~i~~~g~~~~l~~ 227 (306)
T PRK13537 168 GLDPQARHLMWERLRSLLARGKTILLTTHFME-EAERLCDRLCVIEEGRKIAEGAPHALIE 227 (306)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999888999999999965 5888999999999999999999998764
No 25
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=6.7e-46 Score=343.31 Aligned_cols=201 Identities=30% Similarity=0.476 Sum_probs=181.0
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-------cccccEEEEccCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-------SLKSKIGFVTQDDVL 77 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-------~~~~~i~yv~Q~~~~ 77 (583)
+.+.+|+||||++++||++-|+||||||||||||+|.+... ++.|+|.+||+++++ .+|++||+|+||..+
T Consensus 13 ~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~--pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rL 90 (223)
T COG2884 13 GGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEER--PTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRL 90 (223)
T ss_pred CCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhc--CCCceEEECCeecccccccccchhhheeeeEeeeccc
Confidence 34679999999999999999999999999999999999653 679999999998753 368999999999999
Q ss_pred CCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEe
Q 007952 78 FPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLD 157 (583)
Q Consensus 78 ~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLD 157 (583)
.++.||+||+.|+.... ..+.++.+++|.++|+.+||.+.++. .+.+|||||||||+||||++.+|++|+.|
T Consensus 91 L~~~tvyeNVA~pL~v~---G~~~~~i~~rV~~~L~~VgL~~k~~~-----lP~~LSGGEQQRvaIARAiV~~P~vLlAD 162 (223)
T COG2884 91 LPDRTVYENVALPLRVI---GKPPREIRRRVSEVLDLVGLKHKARA-----LPSQLSGGEQQRVAIARAIVNQPAVLLAD 162 (223)
T ss_pred cccchHhhhhhhhhhcc---CCCHHHHHHHHHHHHHHhccchhhhc-----CccccCchHHHHHHHHHHHccCCCeEeec
Confidence 99999999999987654 35678889999999999999987765 47899999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcC
Q 007952 158 EPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 216 (583)
Q Consensus 158 EPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 216 (583)
|||-+|||..+.+|++++.++.+.|.||+++|||. .-+.++-.+++.|++|+++....
T Consensus 163 EPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~-~lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 163 EPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDL-ELVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred CCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccH-HHHHhccCcEEEEeCCEEEeccc
Confidence 99999999999999999999999999999999994 34556668999999999987653
No 26
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.1e-46 Score=351.53 Aligned_cols=222 Identities=24% Similarity=0.444 Sum_probs=189.0
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC---CCcccEEEECCccCCc------cccccEEEEccC
Q 007952 4 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME---PTVGGSITYNDHPYSK------SLKSKIGFVTQD 74 (583)
Q Consensus 4 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~---~~~~G~I~~~g~~~~~------~~~~~i~yv~Q~ 74 (583)
++++.+|+|||+.|++++++|+|||||||||||||++...... ...+|+|.++|+++.+ ++|+++|+|+|.
T Consensus 17 Yg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQk 96 (253)
T COG1117 17 YGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQK 96 (253)
T ss_pred ECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccC
Confidence 4688999999999999999999999999999999999964321 1367999999998743 478999999999
Q ss_pred CCCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCcccChHHHHHHHHHHHHHhCCCE
Q 007952 75 DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSL 153 (583)
Q Consensus 75 ~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~i 153 (583)
+.-|| +|++||+.|+.++.. ...++.++.|++.|+...|-+ +.|.+ +....+|||||+||++|||+|+.+|+|
T Consensus 97 PnPFp-~SIydNVayG~r~~g---~~~~~ldeiVe~sLk~AaLWdEVKDrL--~~sa~~LSGGQQQRLcIARalAv~PeV 170 (253)
T COG1117 97 PNPFP-MSIYDNVAYGLRLHG---IKDKELDEIVESSLKKAALWDEVKDRL--HKSALGLSGGQQQRLCIARALAVKPEV 170 (253)
T ss_pred CCCCC-chHHHHHHHhHHhhc---cchHHHHHHHHHHHHHhHhHHHhHHHh--hCCccCCChhHHHHHHHHHHHhcCCcE
Confidence 99999 899999999987643 223677888999999888864 33332 345678999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHHHHHhcCCCCCC
Q 007952 154 LFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQI 233 (583)
Q Consensus 154 llLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~~g~~~~~ 233 (583)
|++|||||+|||.+..+|-+++.+|++ .-|||++||.+. ...+..|+..++..|+++++|+.+++. ..|.
T Consensus 171 lLmDEPtSALDPIsT~kIEeLi~eLk~-~yTIviVTHnmq-QAaRvSD~taFf~~G~LvE~g~T~~iF--------~~P~ 240 (253)
T COG1117 171 LLMDEPTSALDPISTLKIEELITELKK-KYTIVIVTHNMQ-QAARVSDYTAFFYLGELVEFGPTDKIF--------TNPK 240 (253)
T ss_pred EEecCcccccCchhHHHHHHHHHHHHh-ccEEEEEeCCHH-HHHHHhHhhhhhcccEEEEEcCHHhhh--------cCcc
Confidence 999999999999999999999999984 789999999964 577999999999999999999999873 3455
Q ss_pred CCChHHHH
Q 007952 234 AMNPAEFL 241 (583)
Q Consensus 234 ~~npad~~ 241 (583)
+.-..||+
T Consensus 241 ~~~TedYi 248 (253)
T COG1117 241 HKRTEDYI 248 (253)
T ss_pred HHHHHHHh
Confidence 55556664
No 27
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=3.5e-45 Score=382.64 Aligned_cols=204 Identities=25% Similarity=0.431 Sum_probs=182.5
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-------cccccEEEEccCCCCCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-------SLKSKIGFVTQDDVLFP 79 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-------~~~~~i~yv~Q~~~~~~ 79 (583)
+.+|+|+||++++||+++|+||||||||||+|+|+|... +++|+|.++|+++.. ..+++|||++|+..+++
T Consensus 18 ~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~--p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~ 95 (343)
T TIGR02314 18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLS 95 (343)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccc
Confidence 579999999999999999999999999999999999653 678999999998743 13678999999999999
Q ss_pred CCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCC
Q 007952 80 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEP 159 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEP 159 (583)
.+||+||+.+..... ..++++.++++.++++.+||.+..+. ++.+|||||||||+|||||+.+|++|+||||
T Consensus 96 ~~tv~eni~~~~~~~---~~~~~~~~~~v~e~l~~vgL~~~~~~-----~~~~LSgGqkQRV~IARAL~~~P~iLLlDEP 167 (343)
T TIGR02314 96 SRTVFGNVALPLELD---NTPKDEIKRKVTELLALVGLGDKHDS-----YPSNLSGGQKQRVAIARALASNPKVLLCDEA 167 (343)
T ss_pred cCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhC-----ChhhCCHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 999999999876432 24566677889999999999887765 4679999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 160 TSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 160 tsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|++||+.++..+++.|++++++ |.|||++||++. .+.++||++++|++|++++.|+++++.
T Consensus 168 ts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~-~v~~~~d~v~vl~~G~iv~~g~~~~v~ 229 (343)
T TIGR02314 168 TSALDPATTQSILELLKEINRRLGLTILLITHEMD-VVKRICDCVAVISNGELIEQGTVSEIF 229 (343)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999875 999999999964 577899999999999999999998864
No 28
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=3.5e-45 Score=378.66 Aligned_cols=209 Identities=29% Similarity=0.447 Sum_probs=185.1
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc---cccccEEEEccCCCCCCC
Q 007952 4 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---SLKSKIGFVTQDDVLFPH 80 (583)
Q Consensus 4 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~---~~~~~i~yv~Q~~~~~~~ 80 (583)
.+++.+|+|+||++++||+++|+||||||||||+|+|+|.+. +++|+|.++|+++.. ..++.+||++|++.+++.
T Consensus 3 y~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~ 80 (302)
T TIGR01188 3 YGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLR--PTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDED 80 (302)
T ss_pred eCCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCC
Confidence 456789999999999999999999999999999999999763 678999999987643 345679999999999999
Q ss_pred CCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCC
Q 007952 81 LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPT 160 (583)
Q Consensus 81 lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPt 160 (583)
+||+||+.+.+..+ ..+..+..++++++++.+||.+..++. +++||||||||++||+||+.+|++|+|||||
T Consensus 81 ~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~la~al~~~p~lllLDEPt 152 (302)
T TIGR01188 81 LTGRENLEMMGRLY---GLPKDEAEERAEELLELFELGEAADRP-----VGTYSGGMRRRLDIAASLIHQPDVLFLDEPT 152 (302)
T ss_pred CcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhCCc-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 99999999876543 233455566789999999998777664 5699999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHHH
Q 007952 161 SGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAY 223 (583)
Q Consensus 161 sgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~ 223 (583)
+|||+.++..+.+.|++++++|+|||++||++. ++.+.||++++|++|++++.|+++++.+.
T Consensus 153 ~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 153 TGLDPRTRRAIWDYIRALKEEGVTILLTTHYME-EADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred cCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 999999999999999999888999999999965 57889999999999999999999987654
No 29
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-45 Score=385.52 Aligned_cols=206 Identities=28% Similarity=0.494 Sum_probs=184.6
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc--cccccEEEEccCCCCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~--~~~~~i~yv~Q~~~~~~~lT 82 (583)
+++.+|+|+|+++++||+++|+||||||||||||+|+|... +++|+|.++|+++.+ ..++.+|||+|+..+||++|
T Consensus 15 ~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~--p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~t 92 (356)
T PRK11650 15 GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER--ITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMS 92 (356)
T ss_pred CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC--CCceEEEECCEECCCCCHHHCCEEEEeCCccccCCCC
Confidence 45789999999999999999999999999999999999653 679999999998753 23578999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCC
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 162 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsg 162 (583)
|+||+.|+...+ ..++++.+++++++++.+||++..++ ++++|||||||||+|||||+.+|++|+|||||++
T Consensus 93 v~eNi~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~-----~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~ 164 (356)
T PRK11650 93 VRENMAYGLKIR---GMPKAEIEERVAEAARILELEPLLDR-----KPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSN 164 (356)
T ss_pred HHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhHhhC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 999999986532 24566667889999999999887765 4679999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 163 LDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 163 LD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
||+.++..+.+.|+++.++ |.|+|++|||+. ++.+++|++++|++|+++..|+++++.
T Consensus 165 LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~l~D~i~vl~~G~i~~~g~~~~~~ 223 (356)
T PRK11650 165 LDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQV-EAMTLADRVVVMNGGVAEQIGTPVEVY 223 (356)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEEECCHHHHH
Confidence 9999999999999999875 999999999965 588999999999999999999999874
No 30
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.5e-45 Score=364.01 Aligned_cols=206 Identities=30% Similarity=0.534 Sum_probs=179.4
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-------cccccEEEEccCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-------SLKSKIGFVTQDDVL 77 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-------~~~~~i~yv~Q~~~~ 77 (583)
+++.+|+|+|+++++||+++|+||||||||||+|+|+|... +.+|+|.++|+++.. ..++.++||+|++.+
T Consensus 11 ~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~ 88 (235)
T cd03261 11 GGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR--PDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGAL 88 (235)
T ss_pred CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccChhhHHHHhcceEEEccCccc
Confidence 35679999999999999999999999999999999999653 578999999987642 245679999999999
Q ss_pred CCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEe
Q 007952 78 FPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLD 157 (583)
Q Consensus 78 ~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLD 157 (583)
++.+||+||+.+...... ..+.++..+++.++++.+||.+..++ .+.+|||||||||+||++|+.+|++|+||
T Consensus 89 ~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LSgG~~qrv~ia~al~~~p~llllD 161 (235)
T cd03261 89 FDSLTVFENVAFPLREHT--RLSEEEIREIVLEKLEAVGLRGAEDL-----YPAELSGGMKKRVALARALALDPELLLYD 161 (235)
T ss_pred CCCCcHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHHcCCchhhcC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEec
Confidence 999999999988643221 23445556778999999999876655 35799999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhH
Q 007952 158 EPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 220 (583)
Q Consensus 158 EPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 220 (583)
|||+|||+.++..+++.|++++++ |+|||++||++. ++.++||++++|++|++++.|++++.
T Consensus 162 EPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~ 224 (235)
T cd03261 162 EPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAVLYDGKIVAEGTPEEL 224 (235)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhcCEEEEEECCeEEEecCHHHH
Confidence 999999999999999999999874 899999999975 57788999999999999999998775
No 31
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=6.5e-45 Score=382.96 Aligned_cols=207 Identities=28% Similarity=0.498 Sum_probs=185.7
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc--cccccEEEEccCCCCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~--~~~~~i~yv~Q~~~~~~~lT 82 (583)
+++.+|+|+|+++++||+++|+|||||||||||++|+|... +++|+|.++|+++.. ..++.+|||+|+..+||++|
T Consensus 15 ~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~--p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~t 92 (353)
T TIGR03265 15 GAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER--QTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLT 92 (353)
T ss_pred CCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC--CCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCc
Confidence 45679999999999999999999999999999999999653 679999999988753 24678999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCC
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 162 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsg 162 (583)
|+||+.|+...+ ..++++.+++++++++.+||++..++ .+++|||||||||+|||||+.+|++++|||||++
T Consensus 93 v~eNi~~~~~~~---~~~~~~~~~~~~~~l~~l~L~~~~~~-----~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~ 164 (353)
T TIGR03265 93 VADNIAYGLKNR---GMGRAEVAERVAELLDLVGLPGSERK-----YPGQLSGGQQQRVALARALATSPGLLLLDEPLSA 164 (353)
T ss_pred HHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 999999986543 24566777889999999999987765 4679999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 163 LDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 163 LD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
||+.++.++.+.|+++.++ |.|+|++|||+. ++.+++|++++|++|+++..|+++++.+
T Consensus 165 LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~-ea~~l~d~i~vl~~G~i~~~g~~~~~~~ 224 (353)
T TIGR03265 165 LDARVREHLRTEIRQLQRRLGVTTIMVTHDQE-EALSMADRIVVMNHGVIEQVGTPQEIYR 224 (353)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999775 899999999975 6789999999999999999999988753
No 32
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=4.4e-46 Score=346.85 Aligned_cols=212 Identities=27% Similarity=0.513 Sum_probs=190.2
Q ss_pred CCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-----cccccEEEEccCCC
Q 007952 2 TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-----SLKSKIGFVTQDDV 76 (583)
Q Consensus 2 ~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-----~~~~~i~yv~Q~~~ 76 (583)
++.++++++++||+++++||+++++|||||||||.+.++.|... +++|+|.+||.+++. ..|..|||+||++.
T Consensus 12 K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~--~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~S 89 (243)
T COG1137 12 KSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVR--PDSGKILLDDEDITKLPMHKRARLGIGYLPQEAS 89 (243)
T ss_pred HhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEe--cCCceEEECCcccccCChHHHhhcCcccccccch
Confidence 45678999999999999999999999999999999999999764 679999999998864 34567999999999
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEE
Q 007952 77 LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFL 156 (583)
Q Consensus 77 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illL 156 (583)
.|..|||+||+......+.. ...+++.+.+++++|+++++.|+++++ ...||||||||+.|||||+.+|+.++|
T Consensus 90 IFr~LtV~dNi~~vlE~~~~-d~~~~~~~~~l~~LL~ef~i~hlr~~~-----a~sLSGGERRR~EIARaLa~~P~fiLL 163 (243)
T COG1137 90 IFRKLTVEDNIMAVLEIREK-DLKKAERKEELDALLEEFHITHLRDSK-----AYSLSGGERRRVEIARALAANPKFILL 163 (243)
T ss_pred HhhcCcHHHHHHHHHhhhhc-chhHHHHHHHHHHHHHHhchHHHhcCc-----ccccccchHHHHHHHHHHhcCCCEEEe
Confidence 99999999999987766532 223456667789999999999999875 468999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 157 DEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 157 DEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
|||++|.||.+..+|.++++.|+++|..|++|-|+.. |...+|||.+++.+|++..+|+|+++.+
T Consensus 164 DEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVR-EtL~i~dRaYIi~~G~vla~G~p~ei~~ 228 (243)
T COG1137 164 DEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVR-ETLDICDRAYIISDGKVLAEGSPEEIVN 228 (243)
T ss_pred cCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHH-HHHhhhheEEEEecCeEEecCCHHHHhc
Confidence 9999999999999999999999999999999999976 5779999999999999999999998763
No 33
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=1.6e-44 Score=379.89 Aligned_cols=209 Identities=26% Similarity=0.458 Sum_probs=185.7
Q ss_pred CccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cc----cccEEEEccC
Q 007952 3 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SL----KSKIGFVTQD 74 (583)
Q Consensus 3 ~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~----~~~i~yv~Q~ 74 (583)
..+.+.+|+|+||+|++||+++|+|||||||||||++|+|... +++|+|.++|+++.. .. ++.++||+|+
T Consensus 2 ~~~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~--p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~ 79 (363)
T TIGR01186 2 KTGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIE--PTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQ 79 (363)
T ss_pred ccCCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCC--CCceEEEECCEECCcCCHHHHHHHHhCcEEEEECC
Confidence 4567889999999999999999999999999999999999653 679999999998753 22 5789999999
Q ss_pred CCCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEE
Q 007952 75 DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLL 154 (583)
Q Consensus 75 ~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~il 154 (583)
+.++|++||+||+.|..... ..++++..+++.++++.+||++..++ ++.+|||||||||+|||||+.+|++|
T Consensus 80 ~~l~~~~TV~eNi~~~~~~~---~~~~~~~~~~~~~~l~~vgL~~~~~~-----~p~~LSGGq~QRV~lARAL~~~p~iL 151 (363)
T TIGR01186 80 FALFPHMTILQNTSLGPELL---GWPEQERKEKALELLKLVGLEEYEHR-----YPDELSGGMQQRVGLARALAAEPDIL 151 (363)
T ss_pred CcCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCchhhhC-----ChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999976542 24566677889999999999876665 46799999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 155 FLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
+|||||+|||+.++..+.+.++++.++ |+|||++||++. ++.++||+|++|++|+++..|+++++..
T Consensus 152 LlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~-ea~~~~drI~vl~~G~iv~~g~~~ei~~ 219 (363)
T TIGR01186 152 LMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLD-EAIRIGDRIVIMKAGEIVQVGTPDEILR 219 (363)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEeeCCHHHHHh
Confidence 999999999999999999999999764 899999999965 5788999999999999999999988753
No 34
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-44 Score=380.34 Aligned_cols=206 Identities=26% Similarity=0.517 Sum_probs=184.8
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc--cccccEEEEccCCCCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~--~~~~~i~yv~Q~~~~~~~lT 82 (583)
+++.+|+|+|+++++||+++|+|||||||||||++|+|... +++|+|.++|+++.. ..++.+|||+|+..+||++|
T Consensus 17 ~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~t 94 (351)
T PRK11432 17 GSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEK--PTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMS 94 (351)
T ss_pred CCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC--CCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCC
Confidence 45679999999999999999999999999999999999753 679999999998753 23578999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCC
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 162 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsg 162 (583)
|+||+.|+...+ ..++++.+++++++++.+||.+..++ ++++|||||||||+|||||+.+|++|+|||||+|
T Consensus 95 v~eNi~~~l~~~---~~~~~~~~~~v~~~l~~~gl~~~~~r-----~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~ 166 (351)
T PRK11432 95 LGENVGYGLKML---GVPKEERKQRVKEALELVDLAGFEDR-----YVDQISGGQQQRVALARALILKPKVLLFDEPLSN 166 (351)
T ss_pred HHHHHHHHHhHc---CCCHHHHHHHHHHHHHHcCCchhhcC-----ChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCccc
Confidence 999999986543 24566777889999999999887665 4679999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 163 LDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 163 LD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
||+.++.++.+.|+++.++ |+|+|++|||+. ++.+++|+|++|++|+++..|+++++.
T Consensus 167 LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-e~~~laD~i~vm~~G~i~~~g~~~~~~ 225 (351)
T PRK11432 167 LDANLRRSMREKIRELQQQFNITSLYVTHDQS-EAFAVSDTVIVMNKGKIMQIGSPQELY 225 (351)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999765 899999999975 578999999999999999999998874
No 35
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=1.7e-44 Score=378.02 Aligned_cols=208 Identities=29% Similarity=0.428 Sum_probs=184.5
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc---cccccEEEEccCCCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---SLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~---~~~~~i~yv~Q~~~~~~~l 81 (583)
+++.+|+|+||+|++||++||+||||||||||+++|+|.+. +++|+|.++|+++.+ ..++.+||++|++.+++.+
T Consensus 52 ~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~--p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~ 129 (340)
T PRK13536 52 GDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTS--PDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEF 129 (340)
T ss_pred CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCceEEEECCEECCcchHHHhccEEEEeCCccCCCCC
Confidence 45679999999999999999999999999999999999763 679999999998753 3467899999999999999
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 161 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPts 161 (583)
||+||+.+....+. .+..+..++++++++.++|.+..++. +++||||||||++||++|+++|++|+|||||+
T Consensus 130 tv~e~l~~~~~~~~---~~~~~~~~~~~~ll~~~~L~~~~~~~-----~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~ 201 (340)
T PRK13536 130 TVRENLLVFGRYFG---MSTREIEAVIPSLLEFARLESKADAR-----VSDLSGGMKRRLTLARALINDPQLLILDEPTT 201 (340)
T ss_pred cHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhCCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEECCCC
Confidence 99999997654431 23445566788999999999877765 46899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHHH
Q 007952 162 GLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAY 223 (583)
Q Consensus 162 gLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~ 223 (583)
|||+.++.++.+.|++++++|+|||++||++. ++.++||+|++|++|++++.|+++++.+.
T Consensus 202 gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~-e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 202 GLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 99999999999999999888999999999965 68899999999999999999999998653
No 36
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=1.8e-44 Score=380.21 Aligned_cols=206 Identities=28% Similarity=0.489 Sum_probs=184.5
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcc--cEEEECCccCCc--cccccEEEEccCCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVG--GSITYNDHPYSK--SLKSKIGFVTQDDVLFPH 80 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~--G~I~~~g~~~~~--~~~~~i~yv~Q~~~~~~~ 80 (583)
+++.+|+|+|+++++||+++|+|||||||||||++|+|... +++ |+|.++|+++.. ..++.+|||+|+..+||.
T Consensus 16 ~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~ 93 (362)
T TIGR03258 16 GANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVK--AAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPH 93 (362)
T ss_pred CCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCCEEEEECCEECCCCCHHHCCEEEEECCcccCCC
Confidence 44679999999999999999999999999999999999653 578 999999988743 235779999999999999
Q ss_pred CCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCC
Q 007952 81 LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPT 160 (583)
Q Consensus 81 lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPt 160 (583)
+||+||+.|+...+ ..++++.+++++++++.+||++..++ .+++|||||||||+|||||+.+|++|+|||||
T Consensus 94 ~tv~enl~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~-----~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~ 165 (362)
T TIGR03258 94 LKVEDNVAFGLRAQ---KMPKADIAERVADALKLVGLGDAAAH-----LPAQLSGGMQQRIAIARAIAIEPDVLLLDEPL 165 (362)
T ss_pred CcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCCchhhC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCcc
Confidence 99999999986543 24566677889999999999987775 46799999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHC--CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 161 SGLDSTTALRIVQMLQDIAEA--GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 161 sgLD~~~~~~i~~~l~~l~~~--g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
+|||+.++.++.+.|++++++ |+|+|++|||+. ++.+++|+|++|++|+++..|+++++.
T Consensus 166 s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~-ea~~l~dri~vl~~G~i~~~g~~~~~~ 227 (362)
T TIGR03258 166 SALDANIRANMREEIAALHEELPELTILCVTHDQD-DALTLADKAGIMKDGRLAAHGEPQALY 227 (362)
T ss_pred ccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999876 799999999965 578999999999999999999999874
No 37
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=2.6e-44 Score=378.44 Aligned_cols=209 Identities=26% Similarity=0.484 Sum_probs=184.1
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc--cccccEEEEccCCCCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~--~~~~~i~yv~Q~~~~~~~lT 82 (583)
+++.+|+|+|+++++||+++|+||||||||||||+|+|... +++|+|.++|+++.. ..++.++||+|++.++|.+|
T Consensus 13 ~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~t 90 (353)
T PRK10851 13 GRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEH--QTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMT 90 (353)
T ss_pred CCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCCCCHHHCCEEEEecCcccCCCCc
Confidence 45679999999999999999999999999999999999653 678999999998743 23567999999999999999
Q ss_pred HHHHHHHHHHcCCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 007952 83 VKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 161 (583)
Q Consensus 83 v~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPts 161 (583)
|+||+.|....+.. ...++++.+++++++++.++|++..++ ++.+|||||||||+|||||+.+|++|+|||||+
T Consensus 91 v~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s 165 (353)
T PRK10851 91 VFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADR-----YPAQLSGGQKQRVALARALAVEPQILLLDEPFG 165 (353)
T ss_pred HHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 99999997643211 123456667789999999999877665 467999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 162 GLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 162 gLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|||+.++..+.+.|++++++ |+|+|++||++. ++.++||++++|++|++++.|+++++.
T Consensus 166 ~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~-ea~~~~Dri~vl~~G~i~~~g~~~~i~ 225 (353)
T PRK10851 166 ALDAQVRKELRRWLRQLHEELKFTSVFVTHDQE-EAMEVADRVVVMSQGNIEQAGTPDQVW 225 (353)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999876 899999999975 578999999999999999999998874
No 38
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-44 Score=349.09 Aligned_cols=203 Identities=30% Similarity=0.493 Sum_probs=177.7
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-----cccccEEEEccCC--CCCCC
Q 007952 8 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-----SLKSKIGFVTQDD--VLFPH 80 (583)
Q Consensus 8 ~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-----~~~~~i~yv~Q~~--~~~~~ 80 (583)
++|+|||+++++||.++|+|+||||||||.++|+|... +.+|+|.++|++..+ ..++.+.+|+||+ .+.|.
T Consensus 21 ~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~--p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~ 98 (252)
T COG1124 21 HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEK--PSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPR 98 (252)
T ss_pred hhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccC--CCCceEEECCcccCccccchhhccceeEEecCCccccCcc
Confidence 49999999999999999999999999999999999653 579999999987654 3578899999997 58999
Q ss_pred CCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCC
Q 007952 81 LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPT 160 (583)
Q Consensus 81 lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPt 160 (583)
.||++.|.-+... +..++. ++++.++++.+||.+..- ++++.+||||||||++|||||+.+|++|+|||||
T Consensus 99 ~tv~~~l~Epl~~---~~~~~~--~~~i~~~L~~VgL~~~~l----~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEpt 169 (252)
T COG1124 99 RTVGRILSEPLRP---HGLSKS--QQRIAELLDQVGLPPSFL----DRRPHELSGGQRQRIAIARALIPEPKLLILDEPT 169 (252)
T ss_pred hhHHHHHhhhhcc---CCccHH--HHHHHHHHHHcCCCHHHH----hcCchhcChhHHHHHHHHHHhccCCCEEEecCch
Confidence 9999999876543 233333 344899999999975322 3468899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 161 SGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 161 sgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
|+||+..+.+|+++|.+++++ |.|.|++|||.. .+..+||||++|++|++++.++.+++.+
T Consensus 170 SaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~-~v~~~cdRi~Vm~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 170 SALDVSVQAQILNLLLELKKERGLTYLFISHDLA-LVEHMCDRIAVMDNGQIVEIGPTEELLS 231 (252)
T ss_pred hhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHH-HHHHHhhheeeeeCCeEEEeechhhhhc
Confidence 999999999999999999875 889999999965 5889999999999999999999999864
No 39
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=8.5e-45 Score=333.38 Aligned_cols=199 Identities=26% Similarity=0.472 Sum_probs=176.4
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc--cccccEEEEccCCCCCCCCCHHHHHHH
Q 007952 12 GITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKSKIGFVTQDDVLFPHLTVKETLTY 89 (583)
Q Consensus 12 ~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~--~~~~~i~yv~Q~~~~~~~lTv~e~l~~ 89 (583)
..++.|+.||++||+||||||||||||+|+|... |.+|+|++||++.+. ...|-+++++|+.++|.++||.+|+.+
T Consensus 17 ~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~--P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigL 94 (231)
T COG3840 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFET--PASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGL 94 (231)
T ss_pred EEEEeecCCcEEEEECCCCccHHHHHHHHHhccC--CCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcc
Confidence 4678899999999999999999999999999654 679999999998753 467889999999999999999999988
Q ss_pred HHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHH
Q 007952 90 AALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTAL 169 (583)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~~~~ 169 (583)
+.. |.-.-.++.+++++.++.++||..+.+.+ +.+|||||||||++||+|+.+-+|++||||+|+|||.-+.
T Consensus 95 Gl~---P~LkL~a~~r~~v~~aa~~vGl~~~~~RL-----P~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~ 166 (231)
T COG3840 95 GLS---PGLKLNAEQREKVEAAAAQVGLAGFLKRL-----PGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRA 166 (231)
T ss_pred cCC---cccccCHHHHHHHHHHHHHhChhhHhhhC-----ccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHH
Confidence 643 22112355667899999999999887764 6799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 170 RIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 170 ~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
++..++.+++++ +.|++++||+|+ ++.+++|+++++++|||.+.|+.++.+
T Consensus 167 eMl~Lv~~l~~E~~~TllmVTH~~~-Da~~ia~~~~fl~~Gri~~~g~~~~~~ 218 (231)
T COG3840 167 EMLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFLDNGRIAAQGSTQELL 218 (231)
T ss_pred HHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhhhceEEEeCCEEEeeccHHHHh
Confidence 999999999864 889999999987 478999999999999999999988764
No 40
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.1e-44 Score=355.04 Aligned_cols=206 Identities=30% Similarity=0.514 Sum_probs=184.2
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCC-----ccccccEEEEccCC-CCCCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-----KSLKSKIGFVTQDD-VLFPH 80 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~-----~~~~~~i~yv~Q~~-~~~~~ 80 (583)
+.+|+|+|+++++||.++|+|+||||||||+++|+|.+. +.+|+|.++|.+.. ...++++|||+|++ ..+-.
T Consensus 17 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~--p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~ 94 (235)
T COG1122 17 KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLK--PTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFG 94 (235)
T ss_pred ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCc--CCCCEEEECCeeccchhhHHHhhcceEEEEECccccccc
Confidence 689999999999999999999999999999999999764 57899999998864 24688999999997 33445
Q ss_pred CCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCC
Q 007952 81 LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPT 160 (583)
Q Consensus 81 lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPt 160 (583)
-||.|.+.|+.... ..+.++.+++++++++.+|+.+.++. .+..|||||||||+||.+|+.+|++|+|||||
T Consensus 95 ~tV~~evafg~~n~---g~~~~e~~~rv~~~l~~vgl~~~~~r-----~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPt 166 (235)
T COG1122 95 PTVEDEVAFGLENL---GLPREEIEERVAEALELVGLEELLDR-----PPFNLSGGQKQRVAIAGVLAMGPEILLLDEPT 166 (235)
T ss_pred CcHHHHHhhchhhc---CCCHHHHHHHHHHHHHHcCchhhccC-----CccccCCcceeeHHhhHHHHcCCCEEEEcCCC
Confidence 69999999986532 45677889999999999999988765 57899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHHH
Q 007952 161 SGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAY 223 (583)
Q Consensus 161 sgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~ 223 (583)
+|||+..+.++++.+++++++ |+|||++|||.. .+..++|++++|++|+++++|+|+++.+.
T Consensus 167 a~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~-~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 167 AGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLE-LVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHH-HHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 999999999999999999987 699999999964 58889999999999999999998877653
No 41
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=5.2e-44 Score=378.10 Aligned_cols=206 Identities=26% Similarity=0.458 Sum_probs=183.9
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc--cccccEEEEccCCCCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~--~~~~~i~yv~Q~~~~~~~lT 82 (583)
+++.+|+|+|+++++||+++|+|||||||||||++|+|... +++|+|.++|+++.. ..++.+|||+|+..+||.+|
T Consensus 25 ~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~--p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~lt 102 (375)
T PRK09452 25 DGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFET--PDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMT 102 (375)
T ss_pred CCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECCCCCHHHCCEEEEecCcccCCCCC
Confidence 45679999999999999999999999999999999999653 678999999998753 23578999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCC
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 162 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsg 162 (583)
|+||+.|+...+ ..++++.+++++++++.+||++..++ ++.+|||||||||+|||+|+.+|++|+|||||+|
T Consensus 103 v~eNi~~~l~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~-----~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~ 174 (375)
T PRK09452 103 VFENVAFGLRMQ---KTPAAEITPRVMEALRMVQLEEFAQR-----KPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSA 174 (375)
T ss_pred HHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCc
Confidence 999999986432 23556667789999999999987775 4679999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 163 LDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 163 LD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
||+.++..+.+.|++++++ |+|+|++|||+. ++..++|++++|++|+++..|+++++.
T Consensus 175 LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~-ea~~laDri~vl~~G~i~~~g~~~~i~ 233 (375)
T PRK09452 175 LDYKLRKQMQNELKALQRKLGITFVFVTHDQE-EALTMSDRIVVMRDGRIEQDGTPREIY 233 (375)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999875 999999999975 578899999999999999999998874
No 42
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.4e-44 Score=352.79 Aligned_cols=204 Identities=29% Similarity=0.488 Sum_probs=178.6
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc---cccccEEEEccCCCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---SLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~---~~~~~i~yv~Q~~~~~~~l 81 (583)
+++.+|+|+|+++++||+++|+||||||||||+|+|+|... +++|+|.++|.++.. ..++.++|++|++.+++.+
T Consensus 11 ~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~ 88 (220)
T cd03265 11 GDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLK--PTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDEL 88 (220)
T ss_pred CCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEecCcChHHHhhcEEEecCCccccccC
Confidence 45679999999999999999999999999999999999653 578999999987642 3456799999999999999
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 161 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPts 161 (583)
||+||+.+....+ ..+.++..++++++++.+||++..++. +.+||||||||++||++|+.+|++++|||||+
T Consensus 89 tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qr~~la~al~~~p~llllDEPt~ 160 (220)
T cd03265 89 TGWENLYIHARLY---GVPGAERRERIDELLDFVGLLEAADRL-----VKTYSGGMRRRLEIARSLVHRPEVLFLDEPTI 160 (220)
T ss_pred cHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 9999999875432 123444556789999999998766654 57999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhh
Q 007952 162 GLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 219 (583)
Q Consensus 162 gLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 219 (583)
|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|+++..|++++
T Consensus 161 ~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 218 (220)
T cd03265 161 GLDPQTRAHVWEYIEKLKEEFGMTILLTTHYME-EAEQLCDRVAIIDHGRIIAEGTPEE 218 (220)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEEeCChHH
Confidence 99999999999999999876 899999999975 5778899999999999999998765
No 43
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.7e-44 Score=345.57 Aligned_cols=212 Identities=29% Similarity=0.553 Sum_probs=198.6
Q ss_pred CccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCC
Q 007952 3 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 3 ~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lT 82 (583)
+.+++.+++|+||++++|++.+++|||||||||.+|+|.|.+. +++|+|.++|.+++...+.+|||+|.+-.++|.+|
T Consensus 11 ~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle--~~~G~I~~~g~~~~~~~~~rIGyLPEERGLy~k~t 88 (300)
T COG4152 11 SFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE--PTEGEITWNGGPLSQEIKNRIGYLPEERGLYPKMT 88 (300)
T ss_pred ccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCC--ccCceEEEcCcchhhhhhhhcccChhhhccCccCc
Confidence 5678999999999999999999999999999999999999764 67999999999999888899999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCC
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 162 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsg 162 (583)
|.|.|.|.+.++ .+++++.+++++.+|+.+++......+ +++||.|++|++.+..+++++|++++||||+||
T Consensus 89 v~dql~yla~Lk---Gm~~~e~~~~~~~wLer~~i~~~~~~k-----Ik~LSKGnqQKIQfisaviHePeLlILDEPFSG 160 (300)
T COG4152 89 VEDQLKYLAELK---GMPKAEIQKKLQAWLERLEIVGKKTKK-----IKELSKGNQQKIQFISAVIHEPELLILDEPFSG 160 (300)
T ss_pred HHHHHHHHHHhc---CCcHHHHHHHHHHHHHhccccccccch-----HHHhhhhhhHHHHHHHHHhcCCCEEEecCCccC
Confidence 999999999886 578999999999999999998877654 579999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHHHHH
Q 007952 163 LDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFS 225 (583)
Q Consensus 163 LD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~ 225 (583)
|||.+.+.+-+.+.+++++|.|||+++|+. +.+.++||++++|++|+.|.+|+.+++.+-|.
T Consensus 161 LDPVN~elLk~~I~~lk~~GatIifSsH~M-e~vEeLCD~llmL~kG~~V~~G~v~~ir~~~G 222 (300)
T COG4152 161 LDPVNVELLKDAIFELKEEGATIIFSSHRM-EHVEELCDRLLMLKKGQTVLYGTVEDIRRSFG 222 (300)
T ss_pred CChhhHHHHHHHHHHHHhcCCEEEEecchH-HHHHHHhhhhheecCCceEEeccHHHHHHhcC
Confidence 999999999999999999999999999995 56899999999999999999999999987553
No 44
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=7.2e-44 Score=356.08 Aligned_cols=208 Identities=30% Similarity=0.493 Sum_probs=178.9
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----c-ccccEEEEccCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----S-LKSKIGFVTQDDVLFP 79 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~-~~~~i~yv~Q~~~~~~ 79 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. . .++.++|++|++.+++
T Consensus 11 ~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~ 88 (236)
T cd03219 11 GGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLR--PTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFP 88 (236)
T ss_pred CCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCceEEECCEECCCCCHHHHHhcCEEEEeccccccc
Confidence 34679999999999999999999999999999999999753 578999999987643 1 2456999999999999
Q ss_pred CCCHHHHHHHHHHcCCCCC-------CCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCC
Q 007952 80 HLTVKETLTYAALLRLPNT-------LTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPS 152 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~~~-------~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ 152 (583)
.+||+||+.+......... ...++..++++++++.+|+++..++ .+++||||||||++||++|+.+|+
T Consensus 89 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LSgG~~qrv~la~al~~~p~ 163 (236)
T cd03219 89 ELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADR-----PAGELSYGQQRRLEIARALATDPK 163 (236)
T ss_pred CCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhC-----ChhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999988754321110 0234455678999999999876655 457999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhH
Q 007952 153 LLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 220 (583)
Q Consensus 153 illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 220 (583)
+++|||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.||++++|++|++++.|++++.
T Consensus 164 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 230 (236)
T cd03219 164 LLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMD-VVMSLADRVTVLDQGRVIAEGTPDEV 230 (236)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEeCCEEEeecCHHHh
Confidence 99999999999999999999999999878999999999975 57788999999999999999998875
No 45
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=9.6e-44 Score=368.10 Aligned_cols=207 Identities=29% Similarity=0.433 Sum_probs=181.6
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc---cccccEEEEccCCCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---SLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~---~~~~~i~yv~Q~~~~~~~l 81 (583)
+++.+|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. ..++.+||++|++.+++.+
T Consensus 15 ~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~ 92 (303)
T TIGR01288 15 GDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMIS--PDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEF 92 (303)
T ss_pred CCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECcccHHHHhhcEEEEeccccCCcCC
Confidence 45679999999999999999999999999999999999653 578999999987642 2467899999999999999
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 161 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPts 161 (583)
||+||+.+....+ ..+.++..++++++++.++|.+..++. +++||||||||++||++|+.+|++|+|||||+
T Consensus 93 tv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~l~~~~~~~-----~~~LSgG~~qrv~la~al~~~p~lllLDEPt~ 164 (303)
T TIGR01288 93 TVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADVR-----VALLSGGMKRRLTLARALINDPQLLILDEPTT 164 (303)
T ss_pred cHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCc-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 9999998755432 133444556788899999998777664 56899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 162 GLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 162 gLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|++++.|+++++..
T Consensus 165 gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 165 GLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999888999999999975 5778999999999999999999988754
No 46
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.9e-44 Score=349.58 Aligned_cols=200 Identities=31% Similarity=0.576 Sum_probs=175.6
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHH
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVK 84 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~ 84 (583)
+++.+++|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++....++.++|++|++.+++.+||+
T Consensus 11 ~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~ 88 (210)
T cd03269 11 GRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIIL--PDSGEVLFDGKPLDIAARNRIGYLPEERGLYPKMKVI 88 (210)
T ss_pred CCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCCchhHHHHccEEEeccCCcCCcCCcHH
Confidence 35679999999999999999999999999999999999653 6799999999887655567899999999999999999
Q ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCC
Q 007952 85 ETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLD 164 (583)
Q Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD 164 (583)
||+.+....+ ..+..+..++++++++.+|+++..++ .+++||||||||++||++|+.+|++++|||||+|||
T Consensus 89 e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD 160 (210)
T cd03269 89 DQLVYLAQLK---GLKKEEARRRIDEWLERLELSEYANK-----RVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLD 160 (210)
T ss_pred HHHHHHHHHc---CCChHHHHHHHHHHHHHcCChHHHhC-----cHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCC
Confidence 9998865443 12344556678999999999876665 357899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEc
Q 007952 165 STTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 215 (583)
Q Consensus 165 ~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 215 (583)
+.++..+.+.|++++++|+|||++||++. ++.+.||++++|++|++++.|
T Consensus 161 ~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 161 PVNVELLKDVIRELARAGKTVILSTHQME-LVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999878999999999975 477889999999999998764
No 47
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-43 Score=376.12 Aligned_cols=207 Identities=26% Similarity=0.473 Sum_probs=184.0
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc--cccccEEEEccCCCCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~--~~~~~i~yv~Q~~~~~~~lT 82 (583)
+++.+|+|+|+++++||+++|+||||||||||||+|+|... +++|+|.++|+++.. ..++.+|||+|+..+||++|
T Consensus 30 ~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~lt 107 (377)
T PRK11607 30 DGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQ--PTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMT 107 (377)
T ss_pred CCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCC
Confidence 34579999999999999999999999999999999999753 678999999998743 34678999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCC
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 162 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsg 162 (583)
|.||+.|+...+ ..++.+.+++++++++.++|.+..++ ++++|||||||||+|||||+.+|++|+|||||++
T Consensus 108 v~eNi~~~l~~~---~~~~~~~~~~v~~~l~~l~L~~~~~~-----~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~ 179 (377)
T PRK11607 108 VEQNIAFGLKQD---KLPKAEIASRVNEMLGLVHMQEFAKR-----KPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGA 179 (377)
T ss_pred HHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 999999986533 23566677889999999999877665 4679999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 163 LDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 163 LD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
||+.++..+.+.|+++.+ .|.|+|++|||+. ++..++|++++|++|+++..|+++++.+
T Consensus 180 LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~laDri~vl~~G~i~~~g~~~~~~~ 239 (377)
T PRK11607 180 LDKKLRDRMQLEVVDILERVGVTCVMVTHDQE-EAMTMAGRIAIMNRGKFVQIGEPEEIYE 239 (377)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEeCCEEEEEcCHHHHHh
Confidence 999999999999999876 4899999999965 5789999999999999999999998753
No 48
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-43 Score=372.96 Aligned_cols=205 Identities=26% Similarity=0.436 Sum_probs=181.2
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-------cccccEEEEccCCCCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-------SLKSKIGFVTQDDVLF 78 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-------~~~~~i~yv~Q~~~~~ 78 (583)
++++|+|+||++++||+++|+||||||||||+|+|+|... +.+|+|.++|+++.. ..++.+|||+|++.++
T Consensus 17 ~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~--p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~ 94 (343)
T PRK11153 17 TIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLER--PTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLL 94 (343)
T ss_pred ceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccC
Confidence 4679999999999999999999999999999999999753 678999999988742 1357799999999999
Q ss_pred CCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeC
Q 007952 79 PHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 158 (583)
Q Consensus 79 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDE 158 (583)
+.+||+||+.+....+ ..+.++.+++++++++.+||++..++ .+++||||||||++||++|+.+|++|+|||
T Consensus 95 ~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~-----~~~~LSgGq~qRv~lAraL~~~p~iLlLDE 166 (343)
T PRK11153 95 SSRTVFDNVALPLELA---GTPKAEIKARVTELLELVGLSDKADR-----YPAQLSGGQKQRVAIARALASNPKVLLCDE 166 (343)
T ss_pred CCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhC-----ChhhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 9999999999875433 23455566788999999999876665 457999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 159 PTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 159 PtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
||+|||+.++..+.+.|++++++ |+|||++||++. ++.++||++++|++|++++.|+++++.
T Consensus 167 Pts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~-~i~~~~d~v~~l~~G~i~~~g~~~~~~ 229 (343)
T PRK11153 167 ATSALDPATTRSILELLKDINRELGLTIVLITHEMD-VVKRICDRVAVIDAGRLVEQGTVSEVF 229 (343)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999765 899999999975 577899999999999999999988764
No 49
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-43 Score=376.24 Aligned_cols=206 Identities=28% Similarity=0.498 Sum_probs=182.4
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc--cccccEEEEccCCCCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~--~~~~~i~yv~Q~~~~~~~lT 82 (583)
+++.+|+|+|+++++||+++|+||||||||||||+|+|... +++|+|.++|+++.. ..++.++||+|+..+++.+|
T Consensus 14 ~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~--p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~t 91 (369)
T PRK11000 14 GDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLED--ITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLS 91 (369)
T ss_pred CCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCC
Confidence 45679999999999999999999999999999999999653 578999999988743 23567999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCC
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 162 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsg 162 (583)
|+||+.|....+ ..+.++.+++++++++.+||++..++ .+.+|||||||||+|||+|+.+|++|+|||||+|
T Consensus 92 v~eni~~~~~~~---~~~~~~~~~~~~~~l~~lgL~~~~~~-----~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~ 163 (369)
T PRK11000 92 VAENMSFGLKLA---GAKKEEINQRVNQVAEVLQLAHLLDR-----KPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSN 163 (369)
T ss_pred HHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhhhcC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 999999876533 23455666789999999999876665 4579999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 163 LDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 163 LD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
||+.++..+.+.|++++++ |+|+|++|||+. ++.++||++++|++|+++..|+++++.
T Consensus 164 LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~-~~~~~~d~i~vl~~G~i~~~g~~~~i~ 222 (369)
T PRK11000 164 LDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDAGRVAQVGKPLELY 222 (369)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999765 899999999975 578899999999999999999998874
No 50
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-43 Score=349.61 Aligned_cols=200 Identities=33% Similarity=0.553 Sum_probs=173.7
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc--cccccEEEEccCCCCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~--~~~~~i~yv~Q~~~~~~~lT 82 (583)
+++.+|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. ..++.++|++|++.+++.+|
T Consensus 11 ~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t 88 (213)
T cd03259 11 GSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLER--PDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLT 88 (213)
T ss_pred CCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEcCcCchhhccEEEEcCchhhccCCc
Confidence 34679999999999999999999999999999999999653 678999999987643 23567999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCC
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 162 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsg 162 (583)
++||+.+..... ....++.+++++++++.+||.+..++. +..||||||||++||++|+.+|++|+|||||+|
T Consensus 89 v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~ 160 (213)
T cd03259 89 VAENIAFGLKLR---GVPKAEIRARVRELLELVGLEGLLNRY-----PHELSGGQQQRVALARALAREPSLLLLDEPLSA 160 (213)
T ss_pred HHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhcC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 999998865432 123445556788999999998766653 578999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEc
Q 007952 163 LDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 215 (583)
Q Consensus 163 LD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 215 (583)
||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|++++.|
T Consensus 161 LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 161 LDAKLREELREELKELQRELGITTIYVTHDQE-EALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999864 899999999975 577899999999999998765
No 51
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-43 Score=355.10 Aligned_cols=208 Identities=26% Similarity=0.478 Sum_probs=178.0
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc--cccccEEEEccCCCCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~--~~~~~i~yv~Q~~~~~~~lT 82 (583)
+++.+|+|+|+++++||+++|+||||||||||+|+|+|... +.+|+|.++|+++.. ..++.++|++|++.+++.+|
T Consensus 13 ~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t 90 (239)
T cd03296 13 GDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLER--PDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMT 90 (239)
T ss_pred CCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCcCCccccceEEEecCCcccCCCC
Confidence 34679999999999999999999999999999999999653 578999999987642 23467999999999999999
Q ss_pred HHHHHHHHHHcCCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 007952 83 VKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 161 (583)
Q Consensus 83 v~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPts 161 (583)
|+||+.+....+.. .....++..++++++++.+||.+..++ .+.+||||||||++||++|+.+|++|+|||||+
T Consensus 91 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrl~la~al~~~p~llllDEP~~ 165 (239)
T cd03296 91 VFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADR-----YPAQLSGGQRQRVALARALAVEPKVLLLDEPFG 165 (239)
T ss_pred HHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhc-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 99999886543211 001233445678899999999876665 357899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhH
Q 007952 162 GLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 220 (583)
Q Consensus 162 gLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 220 (583)
|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|++++.|++++.
T Consensus 166 ~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 224 (239)
T cd03296 166 ALDAKVRKELRRWLRRLHDELHVTTVFVTHDQE-EALEVADRVVVMNKGRIEQVGTPDEV 224 (239)
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEecCHHHH
Confidence 99999999999999999875 899999999975 47788999999999999999998875
No 52
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=7.3e-44 Score=351.37 Aligned_cols=194 Identities=28% Similarity=0.488 Sum_probs=169.7
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-------cccccEEEEccCCCCCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-------SLKSKIGFVTQDDVLFP 79 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-------~~~~~i~yv~Q~~~~~~ 79 (583)
+.+|+|+|+++++||+++|+||||||||||+|+|+|... +.+|+|.++|+++.. ..++.++|++|++.+++
T Consensus 16 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 93 (216)
T TIGR00960 16 QPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEK--PTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLS 93 (216)
T ss_pred eeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEehhhcChhHHHHHHHhceEEecCccccc
Confidence 469999999999999999999999999999999999653 578999999987632 13567999999999999
Q ss_pred CCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCC
Q 007952 80 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEP 159 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEP 159 (583)
.+||+||+.+....+ ....++.+++++++++.+||++..++ .+.+||||||||++||++|+.+|++|+||||
T Consensus 94 ~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LSgG~~qrv~laral~~~p~llllDEP 165 (216)
T TIGR00960 94 DRTVYDNVAFPLRII---GVPPRDANERVSAALEKVGLEGKAHA-----LPMQLSGGEQQRVAIARAIVHKPPLLLADEP 165 (216)
T ss_pred cccHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 999999999875432 12344556678999999999876665 3579999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeE
Q 007952 160 TSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 211 (583)
Q Consensus 160 tsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~i 211 (583)
|+|||+.++..+.+.|++++++|+|||++||++. .+.+.||++++|++|++
T Consensus 166 t~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 166 TGNLDPELSRDIMRLFEEFNRRGTTVLVATHDIN-LVETYRHRTLTLSRGRL 216 (216)
T ss_pred CCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcC
Confidence 9999999999999999999877999999999975 57778999999999974
No 53
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=1.4e-43 Score=353.13 Aligned_cols=205 Identities=28% Similarity=0.523 Sum_probs=178.7
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----c-ccccEEEEccCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----S-LKSKIGFVTQDDVLFP 79 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~-~~~~i~yv~Q~~~~~~ 79 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. . .++.++|++|++.+++
T Consensus 11 ~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~ 88 (232)
T cd03218 11 GKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVK--PDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFR 88 (232)
T ss_pred CCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecccCCHhHHHhccEEEecCCccccc
Confidence 45679999999999999999999999999999999999653 578999999987632 1 2356999999999999
Q ss_pred CCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCC
Q 007952 80 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEP 159 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEP 159 (583)
.+||+||+.+....+ ....++..++++++++.+|+++..++ .++.||||||||++||++|+.+|++|+||||
T Consensus 89 ~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrl~la~al~~~p~llllDEP 160 (232)
T cd03218 89 KLTVEENILAVLEIR---GLSKKEREEKLEELLEEFHITHLRKS-----KASSLSGGERRRVEIARALATNPKFLLLDEP 160 (232)
T ss_pred cCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 999999998864332 12344455678899999999876665 3579999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhH
Q 007952 160 TSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 220 (583)
Q Consensus 160 tsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 220 (583)
|+|||+.++..+.+.|++++++|+|||++||++. ++.+.||++++|++|++++.|++++.
T Consensus 161 t~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 220 (232)
T cd03218 161 FAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVR-ETLSITDRAYIIYEGKVLAEGTPEEI 220 (232)
T ss_pred cccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEEeCHHHh
Confidence 9999999999999999999888999999999975 57889999999999999999998775
No 54
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.7e-43 Score=349.86 Aligned_cols=200 Identities=31% Similarity=0.510 Sum_probs=174.9
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHHH
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKET 86 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~ 86 (583)
+.+|+|+|+++++||+++|+||||||||||+|+|+|... +.+|+|.++|+++.. .++.++|++|++.+++.+||+||
T Consensus 17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~-~~~~i~~v~q~~~~~~~~tv~e~ 93 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLER--PTSGEVLVDGEPVTG-PGPDRGYVFQQDALLPWLTVLDN 93 (220)
T ss_pred eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECcc-ccCcEEEEecccccccCCCHHHH
Confidence 679999999999999999999999999999999999653 578999999988753 45679999999999999999999
Q ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHH
Q 007952 87 LTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDST 166 (583)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~ 166 (583)
+.+....+ ..+.++..++++++++.+||.+..++. +.+||||||||++||++|+.+|++++|||||+|||+.
T Consensus 94 l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~ 165 (220)
T cd03293 94 VALGLELQ---GVPKAEARERAEELLELVGLSGFENAY-----PHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDAL 165 (220)
T ss_pred HHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----cccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHH
Confidence 99875432 123444556789999999998766653 5789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhhcCeEEEEc--CCeEEEEcChh
Q 007952 167 TALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLG--KGSLLYFGKAS 218 (583)
Q Consensus 167 ~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~--~G~iv~~G~~~ 218 (583)
++..+.+.|+++++ .|+|||++||++. ++.+.||++++|+ +|++++.++.+
T Consensus 166 ~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 166 TREQLQEELLDIWRETGKTVLLVTHDID-EAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCCCEEEEEEEec
Confidence 99999999999865 4899999999975 4778899999999 79999988754
No 55
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.7e-43 Score=352.84 Aligned_cols=203 Identities=29% Similarity=0.469 Sum_probs=178.1
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-------cccccEEEEccCCCCCCC
Q 007952 8 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-------SLKSKIGFVTQDDVLFPH 80 (583)
Q Consensus 8 ~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-------~~~~~i~yv~Q~~~~~~~ 80 (583)
++|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. ..++.++|++|++.+++.
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 96 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER--PTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSS 96 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCC
Confidence 79999999999999999999999999999999999753 678999999987642 125679999999999999
Q ss_pred CCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCC
Q 007952 81 LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPT 160 (583)
Q Consensus 81 lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPt 160 (583)
+|++||+.+....+ ..+.++..+.++++++.+||.+..++ .+.+||||||||++||++|+.+|++++|||||
T Consensus 97 ~t~~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~la~al~~~p~lllLDEP~ 168 (233)
T cd03258 97 RTVFENVALPLEIA---GVPKAEIEERVLELLELVGLEDKADA-----YPAQLSGGQKQRVGIARALANNPKVLLCDEAT 168 (233)
T ss_pred CcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhc-----ChhhCCHHHHHHHHHHHHHhcCCCEEEecCCC
Confidence 99999998865432 12344556678899999999876665 35799999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 161 SGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 161 sgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|++++.|++++..
T Consensus 169 ~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (233)
T cd03258 169 SALDPETTQSILALLRDINRELGLTIVLITHEME-VVKRICDRVAVMEKGEVVEEGTVEEVF 229 (233)
T ss_pred CcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999875 899999999975 577889999999999999999987753
No 56
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=8.9e-44 Score=353.40 Aligned_cols=207 Identities=27% Similarity=0.448 Sum_probs=175.5
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC---CCcccEEEECCccCCc------cccccEEEEccCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME---PTVGGSITYNDHPYSK------SLKSKIGFVTQDD 75 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~---~~~~G~I~~~g~~~~~------~~~~~i~yv~Q~~ 75 (583)
+++.+|+|+|+++++||+++|+||||||||||+|+|+|...+ ++.+|+|.++|+++.. ..++.++|++|++
T Consensus 11 ~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~ 90 (227)
T cd03260 11 GDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKP 90 (227)
T ss_pred CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCc
Confidence 456799999999999999999999999999999999997511 3678999999987632 2356799999999
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 76 VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 76 ~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
.++ .+||+||+.+....+. ....++.+++++++++.+|+.+..+.... +.+||||||||++||++|+.+|++|+
T Consensus 91 ~~~-~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~~~LSgG~~qrv~la~al~~~p~lll 164 (227)
T cd03260 91 NPF-PGSIYDNVAYGLRLHG--IKLKEELDERVEEALRKAALWDEVKDRLH---ALGLSGGQQQRLCLARALANEPEVLL 164 (227)
T ss_pred hhc-cccHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCChHHhccCC---cccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 888 7999999988654321 11223345678899999999876554320 47999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhh
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 219 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 219 (583)
|||||+|||+.++..+.+.|++++++ +|||++||++. ++.+.||++++|++|++++.|++++
T Consensus 165 lDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 165 LDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQ-QAARVADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHH-HHHHhCCEEEEEeCCEEEEecCccc
Confidence 99999999999999999999999877 99999999975 5778999999999999999998765
No 57
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.7e-43 Score=354.47 Aligned_cols=206 Identities=31% Similarity=0.509 Sum_probs=175.7
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-------cccccEEEEccCCCCCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-------SLKSKIGFVTQDDVLFP 79 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-------~~~~~i~yv~Q~~~~~~ 79 (583)
+.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. ..++.++|++|++.+++
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 91 (241)
T cd03256 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVE--PTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIE 91 (241)
T ss_pred cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccc
Confidence 679999999999999999999999999999999999653 578999999987642 23567999999999999
Q ss_pred CCCHHHHHHHHHHcCC-----CCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEE
Q 007952 80 HLTVKETLTYAALLRL-----PNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLL 154 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~-----~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~il 154 (583)
.+||+||+.+...... ......++..+++.++++.+||.+..++ .+.+||||||||++||++|+.+|++|
T Consensus 92 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~la~al~~~p~ll 166 (241)
T cd03256 92 RLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQ-----RADQLSGGQQQRVAIARALMQQPKLI 166 (241)
T ss_pred cCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCC-----CcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999987532110 0011123345678889999999876554 45799999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhH
Q 007952 155 FLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 220 (583)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 220 (583)
+|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.++||++++|++|++++.|++++.
T Consensus 167 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 232 (241)
T cd03256 167 LADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD-LAREYADRIVGLKDGRIVFDGPPAEL 232 (241)
T ss_pred EEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeecCHHHh
Confidence 999999999999999999999999864 899999999975 47779999999999999999998875
No 58
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-43 Score=362.43 Aligned_cols=217 Identities=30% Similarity=0.447 Sum_probs=184.1
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc--------cccccEEEEccCC--C
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--------SLKSKIGFVTQDD--V 76 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~--------~~~~~i~yv~Q~~--~ 76 (583)
+.+|+|+|++|++||+++|+||||||||||+++|+|... +.+|+|.++|.++.. ..++.+|||+|++ .
T Consensus 19 ~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~ 96 (288)
T PRK13643 19 SRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQ--PTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQ 96 (288)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC--CCCcEEEECCEECccccccccHHHHHhhEEEEecCcchh
Confidence 369999999999999999999999999999999999653 678999999988631 2467899999986 5
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 77 LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 77 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
+++ .||.||+.|..... ..++++.++++.++++.+||. +..++ .++.||||||||++||++|+.+|++|+
T Consensus 97 l~~-~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~~LSgGqkqrvaiA~aL~~~p~ill 167 (288)
T PRK13643 97 LFE-ETVLKDVAFGPQNF---GIPKEKAEKIAAEKLEMVGLADEFWEK-----SPFELSGGQMRRVAIAGILAMEPEVLV 167 (288)
T ss_pred ccc-chHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCChhhccC-----CcccCCHHHHHHHHHHHHHHhCCCEEE
Confidence 565 69999999875432 235566777899999999996 34443 467999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH---HHHhcCCCCC
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA---YFSSIGCSPQ 232 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~---~f~~~g~~~~ 232 (583)
|||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.||+|++|++|++++.|++++..+ .++..|..+|
T Consensus 168 LDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~-~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~p 246 (288)
T PRK13643 168 LDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMD-DVADYADYVYLLEKGHIISCGTPSDVFQEVDFLKAHELGVP 246 (288)
T ss_pred EECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHHHHcCHHHHHHcCCCCC
Confidence 99999999999999999999999878999999999974 5778999999999999999999988743 3445676665
Q ss_pred CCC
Q 007952 233 IAM 235 (583)
Q Consensus 233 ~~~ 235 (583)
...
T Consensus 247 ~~~ 249 (288)
T PRK13643 247 KAT 249 (288)
T ss_pred hHH
Confidence 443
No 59
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=1.9e-43 Score=365.41 Aligned_cols=206 Identities=26% Similarity=0.476 Sum_probs=183.0
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc---cccccEEEEccCCCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---SLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~---~~~~~i~yv~Q~~~~~~~l 81 (583)
+++.+|+|+||++++||+++|+||||||||||+|+|+|... +++|+|.++|+++.. ..++.+||++|++.+++.+
T Consensus 13 ~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~--~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~ 90 (301)
T TIGR03522 13 GTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLP--PDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDM 90 (301)
T ss_pred CCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcccChHHHHhceEEecCCCCCCCCC
Confidence 45789999999999999999999999999999999999653 679999999988743 3467899999999999999
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 161 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPts 161 (583)
||.||+.+.+.++ ..+.++..++++++++.+||.+..++. ++.||||||||++||+||+.+|++|+|||||+
T Consensus 91 tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~lliLDEPt~ 162 (301)
T TIGR03522 91 YVREYLQFIAGIY---GMKGQLLKQRVEEMIELVGLRPEQHKK-----IGQLSKGYRQRVGLAQALIHDPKVLILDEPTT 162 (301)
T ss_pred cHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCc-----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 9999999876543 233455566789999999999877764 56899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 162 GLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 162 gLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
|||+.++..+.+.|+++++ ++|||++||++. ++.++||++++|++|++++.|++++..+
T Consensus 163 gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 163 GLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQ-EVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred cCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 9999999999999999965 799999999965 5889999999999999999999998765
No 60
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4e-43 Score=360.63 Aligned_cols=205 Identities=26% Similarity=0.475 Sum_probs=177.2
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc------cccccEEEEccCCC-CCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK------SLKSKIGFVTQDDV-LFP 79 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~------~~~~~i~yv~Q~~~-~~~ 79 (583)
+.+|+|||+++++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++.. ..++.+|||+|++. .+.
T Consensus 20 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~ 97 (287)
T PRK13637 20 KKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLK--PTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLF 97 (287)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCccEEEECCEECCCcCccHHHHhhceEEEecCchhccc
Confidence 579999999999999999999999999999999999753 679999999988742 34578999999963 333
Q ss_pred CCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCC--ccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEe
Q 007952 80 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE--RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLD 157 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~--~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLD 157 (583)
..||+||+.+..... ..++++..++++++++.+||. +..++ .++.||||||||++||+||+.+|++|+||
T Consensus 98 ~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~~~LSgGq~qrv~iAraL~~~P~llllD 169 (287)
T PRK13637 98 EETIEKDIAFGPINL---GLSEEEIENRVKRAMNIVGLDYEDYKDK-----SPFELSGGQKRRVAIAGVVAMEPKILILD 169 (287)
T ss_pred cccHHHHHHhHHHHC---CCCHHHHHHHHHHHHHHcCCCchhhccC-----CcccCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 579999999865432 245666677899999999996 44454 46799999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 158 EPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 158 EPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
|||+|||+.++..+.+.|++++++ |+|||++||++. ++.++||++++|++|++++.|++++..+
T Consensus 170 EPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~drv~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13637 170 EPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSME-DVAKLADRIIVMNKGKCELQGTPREVFK 234 (287)
T ss_pred CCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999875 999999999964 5678899999999999999999988743
No 61
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=2.3e-43 Score=346.95 Aligned_cols=200 Identities=27% Similarity=0.505 Sum_probs=174.3
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc--cccccEEEEccCCCCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~--~~~~~i~yv~Q~~~~~~~lT 82 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. ..++.++|++|++.+++.+|
T Consensus 11 ~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t 88 (213)
T cd03301 11 GNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE--PTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMT 88 (213)
T ss_pred CCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCcCCcccceEEEEecChhhccCCC
Confidence 34679999999999999999999999999999999999653 578999999988643 23457999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCC
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 162 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsg 162 (583)
|+||+.+....+ ....++.+++++++++.+|+.+..++ .++.||||||||++||++|+.+|++++|||||+|
T Consensus 89 v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qr~~laral~~~p~llllDEPt~~ 160 (213)
T cd03301 89 VYDNIAFGLKLR---KVPKDEIDERVREVAELLQIEHLLDR-----KPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSN 160 (213)
T ss_pred HHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHHhC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 999998865432 13345556678899999999876665 3579999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEc
Q 007952 163 LDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 215 (583)
Q Consensus 163 LD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 215 (583)
||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|++++.|
T Consensus 161 LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 161 LDAKLRVQMRAELKRLQQRLGTTTIYVTHDQV-EAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEECCEEEecC
Confidence 9999999999999999864 899999999975 577889999999999999876
No 62
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=1.5e-43 Score=376.87 Aligned_cols=209 Identities=26% Similarity=0.446 Sum_probs=181.1
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCC
Q 007952 4 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFP 79 (583)
Q Consensus 4 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~ 79 (583)
.+++.+|+|+||++++||+++|+||||||||||||+|+|.++ +.+|+|.++|+++.+ ..++++|||+|+..+++
T Consensus 13 y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~--p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~ 90 (402)
T PRK09536 13 FGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLT--PTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSF 90 (402)
T ss_pred ECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC--CCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCC
Confidence 356789999999999999999999999999999999999763 678999999988643 35678999999999989
Q ss_pred CCCHHHHHHHHHHcCCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeC
Q 007952 80 HLTVKETLTYAALLRLPN-TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 158 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDE 158 (583)
.+||+||+.++...+... ....++.+++++++++.+|+.+..++. +++||||||||++|||+|+++|++|+|||
T Consensus 91 ~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~-----~~~LSgGerQRv~IArAL~~~P~iLLLDE 165 (402)
T PRK09536 91 EFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRP-----VTSLSGGERQRVLLARALAQATPVLLLDE 165 (402)
T ss_pred CCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 999999998853211100 011234556789999999998877654 57999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhH
Q 007952 159 PTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 220 (583)
Q Consensus 159 PtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 220 (583)
||+|||+.++.++++.|++++++|+|||+++|++. ++.++||++++|++|++++.|+++++
T Consensus 166 PtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~-~~~~~adrii~l~~G~iv~~G~~~ev 226 (402)
T PRK09536 166 PTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLD-LAARYCDELVLLADGRVRAAGPPADV 226 (402)
T ss_pred CcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEecCHHHH
Confidence 99999999999999999999878999999999975 57789999999999999999999875
No 63
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=2.4e-43 Score=348.61 Aligned_cols=202 Identities=30% Similarity=0.519 Sum_probs=176.8
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc---cccccEEEEccCCCCCCCCCH
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---SLKSKIGFVTQDDVLFPHLTV 83 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~---~~~~~i~yv~Q~~~~~~~lTv 83 (583)
+++|+|+|+++++||+++|+||||||||||+++|+|... +++|+|.++|+++.. ..++.++|++|++.+++.+||
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 92 (220)
T cd03263 15 KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELR--PTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTV 92 (220)
T ss_pred ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCH
Confidence 679999999999999999999999999999999999653 579999999988643 345679999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCC
Q 007952 84 KETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGL 163 (583)
Q Consensus 84 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgL 163 (583)
+||+.+....+ ..+.++..++++++++.+||.+..++. +.+||||||||++||++|+.+|++|+|||||+||
T Consensus 93 ~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~llllDEP~~~L 164 (220)
T cd03263 93 REHLRFYARLK---GLPKSEIKEEVELLLRVLGLTDKANKR-----ARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGL 164 (220)
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhCh-----hhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCC
Confidence 99998865433 123444556788999999998766654 5689999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhH
Q 007952 164 DSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 220 (583)
Q Consensus 164 D~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 220 (583)
|+.++..+.+.|+++++ ++|||++||++. .+.+.||++++|++|++++.|+++++
T Consensus 165 D~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 165 DPASRRAIWDLILEVRK-GRSIILTTHSMD-EAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred CHHHHHHHHHHHHHHhc-CCEEEEEcCCHH-HHHHhcCEEEEEECCEEEecCCHHHc
Confidence 99999999999999976 699999999976 46788999999999999999988764
No 64
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.3e-43 Score=352.74 Aligned_cols=204 Identities=30% Similarity=0.551 Sum_probs=178.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~lT 82 (583)
+.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. ..++.++|++|++.+++.+|
T Consensus 14 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 91 (242)
T cd03295 14 KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIE--PTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMT 91 (242)
T ss_pred ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCc
Confidence 679999999999999999999999999999999999653 578999999987642 34567999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCc--cccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCC
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER--CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPT 160 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPt 160 (583)
|+||+.+....+ ..+.++..+++.++++.+||.+ ..++ .+++||||||||++||++|+.+|++|+|||||
T Consensus 92 v~e~l~~~~~~~---~~~~~~~~~~~~~~l~~l~l~~~~~~~~-----~~~~LS~G~~qrv~laral~~~p~llllDEPt 163 (242)
T cd03295 92 VEENIALVPKLL---KWPKEKIRERADELLALVGLDPAEFADR-----YPHELSGGQQQRVGVARALAADPPLLLMDEPF 163 (242)
T ss_pred HHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcHHHHhc-----ChhhCCHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence 999998865432 1234455667899999999985 4444 46799999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 161 SGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 161 sgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|++++.|++++..
T Consensus 164 ~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 224 (242)
T cd03295 164 GALDPITRDQLQEEFKRLQQELGKTIVFVTHDID-EAFRLADRIAIMKNGEIVQVGTPDEIL 224 (242)
T ss_pred ccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 999999999999999999875 899999999975 477899999999999999999987753
No 65
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.5e-43 Score=356.52 Aligned_cols=207 Identities=26% Similarity=0.440 Sum_probs=179.3
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----c----ccccEEEEccCC
Q 007952 4 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----S----LKSKIGFVTQDD 75 (583)
Q Consensus 4 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~----~~~~i~yv~Q~~ 75 (583)
.+++.+|+|+|+++++||+++|+||||||||||+|+|+|... +.+|+|.++|.++.. . .++.++|++|++
T Consensus 34 ~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~--p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~ 111 (269)
T cd03294 34 TGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIE--PTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSF 111 (269)
T ss_pred cCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEccccChhhhhhhhcCcEEEEecCc
Confidence 345679999999999999999999999999999999999653 578999999987642 1 135799999999
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 76 VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 76 ~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
.+++.+||+||+.+..... .....+..++++++++.+||.+..++. +++||||||||++||++|+.+|++|+
T Consensus 112 ~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~Gq~qrv~lAral~~~p~ill 183 (269)
T cd03294 112 ALLPHRTVLENVAFGLEVQ---GVPRAEREERAAEALELVGLEGWEHKY-----PDELSGGMQQRVGLARALAVDPDILL 183 (269)
T ss_pred ccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCC-----cccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999875432 123444556788999999998766654 56899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|++++.|+++++.
T Consensus 184 LDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~ 249 (269)
T cd03294 184 MDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLD-EALRLGDRIAIMKDGRLVQVGTPEEIL 249 (269)
T ss_pred EcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999764 899999999965 577899999999999999999988764
No 66
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=3.5e-43 Score=346.95 Aligned_cols=197 Identities=32% Similarity=0.571 Sum_probs=173.8
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc---cccccEEEEccCCCCCCCCCHH
Q 007952 8 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---SLKSKIGFVTQDDVLFPHLTVK 84 (583)
Q Consensus 8 ~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~---~~~~~i~yv~Q~~~~~~~lTv~ 84 (583)
++|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++.. ..++.++|++|++.+++.+||+
T Consensus 19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~--~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 96 (218)
T cd03266 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLL--EPDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTAR 96 (218)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCc--CCCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHH
Confidence 7999999999999999999999999999999999965 3679999999987643 3457899999999999999999
Q ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCC
Q 007952 85 ETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLD 164 (583)
Q Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD 164 (583)
||+.+....+ ..+.++..++++++++.+||.+..++. +++||||||||++||++|+.+|++|+|||||+|||
T Consensus 97 e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD 168 (218)
T cd03266 97 ENLEYFAGLY---GLKGDELTARLEELADRLGMEELLDRR-----VGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLD 168 (218)
T ss_pred HHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhhh-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCC
Confidence 9998765432 233455567889999999998766653 57999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEc
Q 007952 165 STTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 215 (583)
Q Consensus 165 ~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 215 (583)
+.++..+.+.|++++++|+|||++||++. ++.+.+|++++|++|++++.|
T Consensus 169 ~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 169 VMATRALREFIRQLRALGKCILFSTHIMQ-EVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhcCEEEEEECCEEeecC
Confidence 99999999999999878999999999975 577889999999999998754
No 67
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=5e-43 Score=350.99 Aligned_cols=207 Identities=29% Similarity=0.513 Sum_probs=179.4
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc------cccccEEEEccCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK------SLKSKIGFVTQDDVLF 78 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~------~~~~~i~yv~Q~~~~~ 78 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++.. ..++.++|++|++.++
T Consensus 12 ~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~--~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 89 (240)
T PRK09493 12 GPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLE--EITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLF 89 (240)
T ss_pred CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC--CCCceEEEECCEECCcCChhHHHHhhceEEEecccccC
Confidence 3467999999999999999999999999999999999965 3678999999988642 2356799999999999
Q ss_pred CCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeC
Q 007952 79 PHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 158 (583)
Q Consensus 79 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDE 158 (583)
+.+||+||+.+..... ...+.++..+++.++++.+||++..+. .++.||||||||++||++|+.+|++++|||
T Consensus 90 ~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~-----~~~~LS~G~~qrv~la~al~~~p~llllDE 162 (240)
T PRK09493 90 PHLTALENVMFGPLRV--RGASKEEAEKQARELLAKVGLAERAHH-----YPSELSGGQQQRVAIARALAVKPKLMLFDE 162 (240)
T ss_pred CCCcHHHHHHhHHHHh--cCCCHHHHHHHHHHHHHHcCChHHHhc-----ChhhcCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 9999999998764211 123344556678999999999876655 357999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 159 PTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 159 PtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
||+|||+.++..+.+.|++++++|+|||++||++. ++.+.||++++|++|++++.|++++..
T Consensus 163 P~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 224 (240)
T PRK09493 163 PTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIG-FAEKVASRLIFIDKGRIAEDGDPQVLI 224 (240)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeeCCHHHHh
Confidence 99999999999999999999877999999999975 477889999999999999999988764
No 68
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=3.2e-43 Score=348.08 Aligned_cols=204 Identities=29% Similarity=0.514 Sum_probs=174.9
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----c-ccccEEEEccCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----S-LKSKIGFVTQDDVLFP 79 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~-~~~~i~yv~Q~~~~~~ 79 (583)
+++++|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. . .++.++|++|++.+++
T Consensus 11 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~ 88 (222)
T cd03224 11 GKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP--PRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFP 88 (222)
T ss_pred CCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCC
Confidence 45679999999999999999999999999999999999753 578999999987642 1 2467999999999999
Q ss_pred CCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHc-CCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeC
Q 007952 80 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL-GLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 158 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDE 158 (583)
.+|++||+.+...... ..+..+++.++++.+ ++++..++ .+++||||||||++||++|+.+|++|+|||
T Consensus 89 ~~t~~~~l~~~~~~~~-----~~~~~~~~~~~l~~~~~l~~~~~~-----~~~~LS~G~~qrv~laral~~~p~llllDE 158 (222)
T cd03224 89 ELTVEENLLLGAYARR-----RAKRKARLERVYELFPRLKERRKQ-----LAGTLSGGEQQMLAIARALMSRPKLLLLDE 158 (222)
T ss_pred CCcHHHHHHHHhhhcC-----chhHHHHHHHHHHHHHhhhhhhhC-----chhhCCHHHHHHHHHHHHHhcCCCEEEECC
Confidence 9999999988654321 123345567788887 57665554 457999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 159 PTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 159 PtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
||+|||+.++..+++.|++++++|+|||++||++. ++.+.||++++|++|+++..|++++..
T Consensus 159 Pt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 159 PSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNAR-FALEIADRAYVLERGRVVLEGTAAELL 220 (222)
T ss_pred CcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence 99999999999999999999878899999999975 577899999999999999999887653
No 69
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=2.3e-43 Score=353.98 Aligned_cols=207 Identities=30% Similarity=0.464 Sum_probs=175.5
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-------cccccEEEEccCCCCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-------SLKSKIGFVTQDDVLF 78 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-------~~~~~i~yv~Q~~~~~ 78 (583)
++.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. ..++.++|++|++.++
T Consensus 14 ~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 91 (243)
T TIGR02315 14 GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVE--PSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLI 91 (243)
T ss_pred CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCccc
Confidence 5679999999999999999999999999999999999653 578999999987642 1356799999999999
Q ss_pred CCCCHHHHHHHHHHcCC--C---CCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCE
Q 007952 79 PHLTVKETLTYAALLRL--P---NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSL 153 (583)
Q Consensus 79 ~~lTv~e~l~~~~~~~~--~---~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~i 153 (583)
+.+||+||+.+...... . .....++..+++.++++.+||.+..++ .+.+||||||||++||++|+.+|++
T Consensus 92 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LSgG~~qrv~la~al~~~p~l 166 (243)
T TIGR02315 92 ERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQ-----RADQLSGGQQQRVAIARALAQQPDL 166 (243)
T ss_pred ccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcC-----CcccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999986431100 0 001123345678899999999876654 4579999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhH
Q 007952 154 LFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 220 (583)
Q Consensus 154 llLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 220 (583)
|+|||||+|||+.++..+.+.|++++++ |+|||++||++. .+.++||++++|++|++++.|+++++
T Consensus 167 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 167 ILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVD-LAKKYADRIVGLKAGEIVFDGAPSEL 233 (243)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEECCEEEecCCHHHh
Confidence 9999999999999999999999999764 899999999975 46788999999999999999998764
No 70
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=6.9e-43 Score=352.07 Aligned_cols=207 Identities=31% Similarity=0.525 Sum_probs=178.6
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc------------cccccEEEEc
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK------------SLKSKIGFVT 72 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~------------~~~~~i~yv~ 72 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. ..++.++|++
T Consensus 14 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~ 91 (250)
T PRK11264 14 HGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQ--PEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVF 91 (250)
T ss_pred CCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEccccccccchhhHHHHhhhhEEEEe
Confidence 34679999999999999999999999999999999999653 578999999987631 2356799999
Q ss_pred cCCCCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCC
Q 007952 73 QDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPS 152 (583)
Q Consensus 73 Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ 152 (583)
|++.+++.+||+||+.+...... ....++..+++.++++.+||.+..++ .+++||||||||++||++|+.+|+
T Consensus 92 q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~-----~~~~LS~Gq~qrv~la~al~~~p~ 164 (250)
T PRK11264 92 QNFNLFPHRTVLENIIEGPVIVK--GEPKEEATARARELLAKVGLAGKETS-----YPRRLSGGQQQRVAIARALAMRPE 164 (250)
T ss_pred cCcccCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhC-----ChhhCChHHHHHHHHHHHHhcCCC
Confidence 99999999999999987542111 12344556678899999999876554 457999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 153 LLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 153 illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
+|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.||++++|++|++++.|++++..
T Consensus 165 lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 232 (250)
T PRK11264 165 VILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMS-FARDVADRAIFMDQGRIVEQGPAKALF 232 (250)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999878999999999975 577889999999999999999988763
No 71
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=3.7e-43 Score=344.30 Aligned_cols=196 Identities=31% Similarity=0.543 Sum_probs=171.6
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc--cccccEEEEccCCCCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~--~~~~~i~yv~Q~~~~~~~lT 82 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. ..++.++|++|++.+++.+|
T Consensus 11 ~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t 88 (208)
T cd03268 11 GKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK--PDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLT 88 (208)
T ss_pred CCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCCcccchHHHHhhEEEecCCCccCccCc
Confidence 35689999999999999999999999999999999999653 679999999987643 34567999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCC
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 162 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsg 162 (583)
|+||+.+....+. . .+++++++++.++|.+..++. +..||||||||++||++|+.+|++++|||||+|
T Consensus 89 v~e~l~~~~~~~~---~----~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~llllDEPt~~ 156 (208)
T cd03268 89 ARENLRLLARLLG---I----RKKRIDEVLDVVGLKDSAKKK-----VKGFSLGMKQRLGIALALLGNPDLLILDEPTNG 156 (208)
T ss_pred HHHHHHHHHHhcC---C----cHHHHHHHHHHcCCHHHHhhh-----HhhCCHHHHHHHHHHHHHhcCCCEEEECCCccc
Confidence 9999988654321 1 235678899999998766653 578999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEc
Q 007952 163 LDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 215 (583)
Q Consensus 163 LD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 215 (583)
||+.++..+.+.|++++++|+|||++||++. ++.+.+|++++|++|++++.|
T Consensus 157 LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 157 LDPDGIKELRELILSLRDQGITVLISSHLLS-EIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999888999999999975 467789999999999998765
No 72
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-43 Score=341.94 Aligned_cols=211 Identities=27% Similarity=0.475 Sum_probs=187.0
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-----cccccEEEEccCCCCC
Q 007952 4 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-----SLKSKIGFVTQDDVLF 78 (583)
Q Consensus 4 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-----~~~~~i~yv~Q~~~~~ 78 (583)
-+.-.+++|||+++++||+++|+||||||||||+|+|+|.++ |++|+|.++|++++. ..+..++--+|...+|
T Consensus 14 FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~--P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF 91 (250)
T COG0411 14 FGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYK--PSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLF 91 (250)
T ss_pred cCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeeccccc--CCCceEEECCcccCCCCHHHHHhccceeeccccccc
Confidence 456789999999999999999999999999999999999764 679999999998863 2356799999999999
Q ss_pred CCCCHHHHHHHHHHcCC--------CCC-CCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHh
Q 007952 79 PHLTVKETLTYAALLRL--------PNT-LTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIII 149 (583)
Q Consensus 79 ~~lTv~e~l~~~~~~~~--------~~~-~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~ 149 (583)
++|||.||+..++..+. +.. ...++..+++.++|+.+||.+.+|... .+||+|||||+.|||||++
T Consensus 92 ~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A-----~~LsyG~qR~LEIArALa~ 166 (250)
T COG0411 92 PGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPA-----GNLSYGQQRRLEIARALAT 166 (250)
T ss_pred CCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchh-----hcCChhHhHHHHHHHHHhc
Confidence 99999999998865331 111 134566778999999999999998764 5899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 150 NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 150 ~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
+|++|+||||.+||.+....++.+.|++++++ |.||+++.||.. .++++||||++|+.|+++..|+|+++.+
T Consensus 167 ~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~-~Vm~l~dri~Vl~~G~~IAeG~P~eV~~ 239 (250)
T COG0411 167 QPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMK-LVMGLADRIVVLNYGEVIAEGTPEEVRN 239 (250)
T ss_pred CCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccH-HHhhhccEEEeccCCcCcccCCHHHHhc
Confidence 99999999999999999999999999999984 699999999965 5899999999999999999999999864
No 73
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-42 Score=358.04 Aligned_cols=203 Identities=28% Similarity=0.479 Sum_probs=175.8
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc--------cccccEEEEccCC--C
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--------SLKSKIGFVTQDD--V 76 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~--------~~~~~i~yv~Q~~--~ 76 (583)
+++|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. ..++.+|||+|++ .
T Consensus 20 ~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~ 97 (290)
T PRK13634 20 RRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQ--PTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQ 97 (290)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhh
Confidence 569999999999999999999999999999999999753 678999999997631 2356799999986 4
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 77 LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 77 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
++ ..||+||+.|..... ..+.++..++++++++.+||. +..++ .+++||||||||++||++|+.+|++|+
T Consensus 98 l~-~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~~LSgGq~qrv~lAraL~~~P~lll 168 (290)
T PRK13634 98 LF-EETVEKDICFGPMNF---GVSEEDAKQKAREMIELVGLPEELLAR-----SPFELSGGQMRRVAIAGVLAMEPEVLV 168 (290)
T ss_pred hh-hhhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCChhhhhC-----CcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 55 469999999875432 234555667899999999996 44554 467999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|||||+|||+.++..+.+.|++++++ |.|||++||++. ++.+.||++++|++|++++.|+++++.
T Consensus 169 lDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~-~~~~~~drv~~l~~G~i~~~g~~~~~~ 234 (290)
T PRK13634 169 LDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME-DAARYADQIVVMHKGTVFLQGTPREIF 234 (290)
T ss_pred EECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 99999999999999999999999765 999999999965 577899999999999999999988764
No 74
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=4.9e-43 Score=345.87 Aligned_cols=193 Identities=34% Similarity=0.580 Sum_probs=167.8
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCcc--------ccccEEEEccCCCCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS--------LKSKIGFVTQDDVLF 78 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~--------~~~~i~yv~Q~~~~~ 78 (583)
+.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|+++... .++.++|++|++.++
T Consensus 17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 94 (218)
T cd03255 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR--PTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLL 94 (218)
T ss_pred eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcC--CCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccC
Confidence 679999999999999999999999999999999999653 5789999999876421 245799999999999
Q ss_pred CCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeC
Q 007952 79 PHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 158 (583)
Q Consensus 79 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDE 158 (583)
+.+||+||+.+....+ .....+.+++++++++.+||++..++ .+++||||||||++||++|+.+|++|+|||
T Consensus 95 ~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~la~al~~~p~lllLDE 166 (218)
T cd03255 95 PDLTALENVELPLLLA---GVPKKERRERAEELLERVGLGDRLNH-----YPSELSGGQQQRVAIARALANDPKIILADE 166 (218)
T ss_pred CCCcHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhc-----ChhhcCHHHHHHHHHHHHHccCCCEEEEcC
Confidence 9999999999875433 12334455678899999999876654 357999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhhcCeEEEEcCCeE
Q 007952 159 PTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 211 (583)
Q Consensus 159 PtsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~i 211 (583)
||+|||+.++..+.+.|+++++ +|+|||++||++.. +. .||++++|++|++
T Consensus 167 P~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~-~~-~~d~v~~l~~G~i 218 (218)
T cd03255 167 PTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPEL-AE-YADRIIELRDGKI 218 (218)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHH-Hh-hhcEEEEeeCCcC
Confidence 9999999999999999999987 58999999999754 54 8999999999974
No 75
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=1.2e-42 Score=345.26 Aligned_cols=205 Identities=46% Similarity=0.788 Sum_probs=174.6
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC-CCcccEEEECCccCCc-cccccEEEEccCCCCCCCCCH
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-PTVGGSITYNDHPYSK-SLKSKIGFVTQDDVLFPHLTV 83 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~-~~~~G~I~~~g~~~~~-~~~~~i~yv~Q~~~~~~~lTv 83 (583)
.+++|+|+|+++++||+++|+||||||||||+|+|+|.... .+.+|+|.++|+++.. ..++.++|++|++.+++.+||
T Consensus 19 ~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv 98 (226)
T cd03234 19 YARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTV 98 (226)
T ss_pred ccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCcH
Confidence 47899999999999999999999999999999999997531 1578999999987753 356789999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHH-HHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCC
Q 007952 84 KETLTYAALLRLPNTLTKQQKEKRAID-VINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 162 (583)
Q Consensus 84 ~e~l~~~~~~~~~~~~~~~~~~~~v~~-~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsg 162 (583)
+||+.+......+.....+...+++++ .++.+++++..++ .++.||||||||++||++|+.+|++++|||||+|
T Consensus 99 ~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrl~laral~~~p~illlDEP~~g 173 (226)
T cd03234 99 RETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGN-----LVKGISGGERRRVSIAVQLLWDPKVLILDEPTSG 173 (226)
T ss_pred HHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcc-----cccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcC
Confidence 999998765432222222333344555 8899998776654 4579999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEc
Q 007952 163 LDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 215 (583)
Q Consensus 163 LD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 215 (583)
||+.++..+.+.|++++++|.|+|+++|++..++.+.||++++|++|++++.|
T Consensus 174 LD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 174 LDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999998779999999999755688999999999999998865
No 76
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.8e-43 Score=349.62 Aligned_cols=205 Identities=28% Similarity=0.459 Sum_probs=187.1
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-------c-ccccEEEEccCCCCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-------S-LKSKIGFVTQDDVLF 78 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-------~-~~~~i~yv~Q~~~~~ 78 (583)
..-++|+|++++.||+..|||-||||||||+++|+++. .|+.|+|+++|.++.+ + .++++++|+|...++
T Consensus 41 vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLi--ept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLl 118 (386)
T COG4175 41 VVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLI--EPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALL 118 (386)
T ss_pred EEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccC--CCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccc
Confidence 34579999999999999999999999999999999854 3679999999998742 2 357899999999999
Q ss_pred CCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeC
Q 007952 79 PHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 158 (583)
Q Consensus 79 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDE 158 (583)
|+.||.||..|+...+ ..+++++++++.++|+.+||+...++ ++++|||||||||.+||||+.+|+||++||
T Consensus 119 PhrtVl~Nv~fGLev~---Gv~~~er~~~a~~~l~~VgL~~~~~~-----yp~eLSGGMqQRVGLARAla~~~~IlLMDE 190 (386)
T COG4175 119 PHRTVLENVAFGLEVQ---GVPKAEREERALEALELVGLEGYADK-----YPNELSGGMQQRVGLARALANDPDILLMDE 190 (386)
T ss_pred cchhHhhhhhcceeec---CCCHHHHHHHHHHHHHHcCchhhhhc-----CcccccchHHHHHHHHHHHccCCCEEEecC
Confidence 9999999999997765 57899999999999999999998876 578999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 159 PTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 159 PtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
|+|+|||--+.++.+.|.+|.++ ++||+++|||.. |.+++-|||.+|++|+++..|+|+|++.
T Consensus 191 aFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLd-EAlriG~rIaimkdG~ivQ~Gtp~eIl~ 254 (386)
T COG4175 191 AFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLD-EALRIGDRIAIMKDGEIVQVGTPEEILL 254 (386)
T ss_pred chhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHH-HHHhccceEEEecCCeEEEeCCHHHHHc
Confidence 99999999999999999999765 899999999975 5789999999999999999999999873
No 77
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-42 Score=354.06 Aligned_cols=204 Identities=27% Similarity=0.410 Sum_probs=176.2
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCC-CCCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDV-LFPH 80 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~-~~~~ 80 (583)
.+.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. ..++.++|++|++. .++.
T Consensus 17 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 94 (274)
T PRK13647 17 GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYL--PQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFS 94 (274)
T ss_pred CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCceEEEECCEECCCCCHHHHHhhEEEEecChhhhhcc
Confidence 4579999999999999999999999999999999999653 578999999988742 23567999999963 4456
Q ss_pred CCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCC
Q 007952 81 LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPT 160 (583)
Q Consensus 81 lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPt 160 (583)
.||.||+.|..... ..++++.+++++++++.+||.+..++ .+.+||||||||++||+||+.+|++|+|||||
T Consensus 95 ~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~-----~~~~LSgG~~qrv~laraL~~~p~llllDEPt 166 (274)
T PRK13647 95 STVWDDVAFGPVNM---GLDKDEVERRVEEALKAVRMWDFRDK-----PPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPM 166 (274)
T ss_pred CcHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcC-----ChhhCCHHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 79999999864321 23445556678999999999876665 46799999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhH
Q 007952 161 SGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 220 (583)
Q Consensus 161 sgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 220 (583)
+|||+.++..+.+.|++++++|+|||++||++. .+.+.||++++|++|++++.|++++.
T Consensus 167 ~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 167 AYLDPRGQETLMEILDRLHNQGKTVIVATHDVD-LAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred cCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHh
Confidence 999999999999999999877999999999965 46789999999999999999998653
No 78
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-42 Score=369.75 Aligned_cols=206 Identities=25% Similarity=0.450 Sum_probs=180.4
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----c----ccccEEEEccCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----S----LKSKIGFVTQDDV 76 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~----~~~~i~yv~Q~~~ 76 (583)
+...+|+|+||++++||+++|+||||||||||+|+|+|... +.+|+|.++|+++.. . .++.++||+|+..
T Consensus 39 ~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~--p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~ 116 (400)
T PRK10070 39 GLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIE--PTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFA 116 (400)
T ss_pred CCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC--CCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCc
Confidence 34458999999999999999999999999999999999653 678999999988642 1 1357999999999
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEE
Q 007952 77 LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFL 156 (583)
Q Consensus 77 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illL 156 (583)
+++.+||+||+.+....+ ..+.++..++++++++.+||++..++ .+++||||||||++|||+|+.+|++|+|
T Consensus 117 l~~~~Tv~enl~~~~~~~---~~~~~~~~~~~~e~L~~~gL~~~~~~-----~~~~LSgGq~QRv~LArAL~~~P~iLLL 188 (400)
T PRK10070 117 LMPHMTVLDNTAFGMELA---GINAEERREKALDALRQVGLENYAHS-----YPDELSGGMRQRVGLARALAINPDILLM 188 (400)
T ss_pred CCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCChhhhc-----CcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999876543 23445566788999999999876665 4679999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 157 DEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 157 DEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
||||+|||+.++..+.+.|+++++ .|+|||++||++. ++.++||++++|++|+++..|+++++.
T Consensus 189 DEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~-~~~~~~Dri~vL~~G~i~~~g~~~~l~ 253 (400)
T PRK10070 189 DEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLD-EAMRIGDRIAIMQNGEVVQVGTPDEIL 253 (400)
T ss_pred ECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHH-HHHHhCCEEEEEECCEEEecCCHHHHH
Confidence 999999999999999999999975 4899999999965 577899999999999999999988764
No 79
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=6.9e-43 Score=343.85 Aligned_cols=194 Identities=34% Similarity=0.538 Sum_probs=169.4
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-------cccccEEEEccCCCCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-------SLKSKIGFVTQDDVLF 78 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-------~~~~~i~yv~Q~~~~~ 78 (583)
++.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. ..++.++|++|++.++
T Consensus 14 ~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 91 (214)
T TIGR02673 14 GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT--PSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLL 91 (214)
T ss_pred CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhc
Confidence 4679999999999999999999999999999999999653 578999999987642 2356799999999999
Q ss_pred CCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeC
Q 007952 79 PHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 158 (583)
Q Consensus 79 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDE 158 (583)
+.+||+||+.+....+ ....++.+++++++++.+||.+..++ .+.+||||||||++||++|+.+|++|+|||
T Consensus 92 ~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrl~la~al~~~p~lllLDE 163 (214)
T TIGR02673 92 PDRTVYENVALPLEVR---GKKEREIQRRVGAALRQVGLEHKADA-----FPEQLSGGEQQRVAIARAIVNSPPLLLADE 163 (214)
T ss_pred cCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhC-----ChhhCCHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 9999999999875432 12344455678999999999876554 357999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCe
Q 007952 159 PTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 210 (583)
Q Consensus 159 PtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~ 210 (583)
||+|||+.++..+.+.|++++++|+|||++||++. ++.+.||++++|++|+
T Consensus 164 Pt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 164 PTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLS-LVDRVAHRVIILDDGR 214 (214)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEecCCC
Confidence 99999999999999999999877999999999975 5778899999999985
No 80
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-42 Score=355.02 Aligned_cols=203 Identities=25% Similarity=0.450 Sum_probs=177.7
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCC-CCCCCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDD-VLFPHL 81 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~-~~~~~l 81 (583)
+.+|+|+|++|++||+++|+||||||||||+++|+|... +.+|+|.++|.++.+ ..++.++||+|++ ..++..
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~ 97 (279)
T PRK13650 20 KYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLE--AESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGA 97 (279)
T ss_pred CeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccc
Confidence 469999999999999999999999999999999999753 579999999988743 3456899999997 467778
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 161 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPts 161 (583)
||+||+.|..... ..+.++..++++++++.+||++..+. .+.+||||||||++||++|+.+|++|+|||||+
T Consensus 98 tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~-----~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~ 169 (279)
T PRK13650 98 TVEDDVAFGLENK---GIPHEEMKERVNEALELVGMQDFKER-----EPARLSGGQKQRVAIAGAVAMRPKIIILDEATS 169 (279)
T ss_pred cHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCCHhHhhC-----CcccCCHHHHHHHHHHHHHHcCCCEEEEECCcc
Confidence 9999999865322 24556666789999999999876665 457999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 162 GLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 162 gLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|||+.++..+++.|++++++ |+|||++||++. ++ ..||++++|++|+++..|++++..
T Consensus 170 ~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~-~~-~~~dri~~l~~G~i~~~g~~~~~~ 228 (279)
T PRK13650 170 MLDPEGRLELIKTIKGIRDDYQMTVISITHDLD-EV-ALSDRVLVMKNGQVESTSTPRELF 228 (279)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999875 999999999975 45 579999999999999999998764
No 81
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=1.5e-42 Score=362.28 Aligned_cols=207 Identities=25% Similarity=0.443 Sum_probs=179.7
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-------cccccEEEEccCC--C
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-------SLKSKIGFVTQDD--V 76 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-------~~~~~i~yv~Q~~--~ 76 (583)
.+.+++|+|++|++||+++|+|+||||||||+++|+|.+. +.+|+|.++|+++.+ ..++.++||+|++ .
T Consensus 33 ~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~--p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~ 110 (331)
T PRK15079 33 TLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVK--ATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLAS 110 (331)
T ss_pred ceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhh
Confidence 3579999999999999999999999999999999999763 578999999998742 2356899999997 6
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 77 LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 77 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
++|.+||.||+.+......+ ..++++.++++.++++.+||. +..+ .++.+|||||||||+||+||+.+|++|+
T Consensus 111 l~p~~tv~~~i~~~l~~~~~-~~~~~~~~~~~~~~l~~vgl~~~~~~-----~~p~~LSgG~~QRv~iArAL~~~P~lli 184 (331)
T PRK15079 111 LNPRMTIGEIIAEPLRTYHP-KLSRQEVKDRVKAMMLKVGLLPNLIN-----RYPHEFSGGQCQRIGIARALILEPKLII 184 (331)
T ss_pred cCCCCCHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHcCCChHHhc-----CCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 89999999999886543211 245666777889999999995 3334 4578999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
+||||+|||+.++.++++.|+++.++ |.|+|++|||+. .+.++||+|++|++|++++.|+++++.
T Consensus 185 lDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~-~~~~~~dri~vl~~G~ive~g~~~~i~ 250 (331)
T PRK15079 185 CDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLA-VVKHISDRVLVMYLGHAVELGTYDEVY 250 (331)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999875 999999999965 577889999999999999999998764
No 82
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=1.3e-42 Score=353.77 Aligned_cols=207 Identities=25% Similarity=0.451 Sum_probs=178.6
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-------cccccEEEEccCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-------SLKSKIGFVTQDDVL 77 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-------~~~~~i~yv~Q~~~~ 77 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|... +++|+|.++|+++.. ..++.++|++|+..+
T Consensus 18 ~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~ 95 (269)
T PRK11831 18 GNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIA--PDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGAL 95 (269)
T ss_pred CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEccccChhhHHHHhhcEEEEeccccc
Confidence 35679999999999999999999999999999999999653 578999999987642 135679999999999
Q ss_pred CCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEe
Q 007952 78 FPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLD 157 (583)
Q Consensus 78 ~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLD 157 (583)
++.+||.||+.+...... ..+.++.++++.++++.+||.+..++. +..||||||||++||++|+.+|++|+||
T Consensus 96 ~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq~qrv~laral~~~p~lllLD 168 (269)
T PRK11831 96 FTDMNVFDNVAYPLREHT--QLPAPLLHSTVMMKLEAVGLRGAAKLM-----PSELSGGMARRAALARAIALEPDLIMFD 168 (269)
T ss_pred CCCCCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 999999999988643211 123444556788899999998766653 5799999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 158 EPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 158 EPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|++++.|+++++.
T Consensus 169 EPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (269)
T PRK11831 169 EPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP-EVLSIADHAYIVADKKIVAHGSAQALQ 232 (269)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhhCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999765 899999999964 577889999999999999999988763
No 83
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.1e-43 Score=349.34 Aligned_cols=207 Identities=28% Similarity=0.562 Sum_probs=179.2
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-----cccccEEEEccCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-----SLKSKIGFVTQDDVLFP 79 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-----~~~~~i~yv~Q~~~~~~ 79 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ..++.++|++|++.+++
T Consensus 14 ~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~ 91 (241)
T PRK10895 14 KGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVP--RDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFR 91 (241)
T ss_pred CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCCCCHHHHHHhCeEEeccCCcccc
Confidence 45679999999999999999999999999999999999653 678999999987642 13567999999999999
Q ss_pred CCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCC
Q 007952 80 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEP 159 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEP 159 (583)
.+||+||+.+....+ ...+.++.+++++++++.+|+.+..++ .++.||||||||++||++|+.+|++|+||||
T Consensus 92 ~~tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~laral~~~p~llllDEP 164 (241)
T PRK10895 92 RLSVYDNLMAVLQIR--DDLSAEQREDRANELMEEFHIEHLRDS-----MGQSLSGGERRRVEIARALAANPKFILLDEP 164 (241)
T ss_pred cCcHHHHHhhhhhcc--cccCHHHHHHHHHHHHHHcCCHHHhhc-----chhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 999999998764322 112344556678999999999866554 4579999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 160 TSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 160 tsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|+|||+.++..+.+.+++++++|+|||++||++. ++.+.||++++|++|++++.|++++..
T Consensus 165 t~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~~ 225 (241)
T PRK10895 165 FAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVR-ETLAVCERAYIVSQGHLIAHGTPTEIL 225 (241)
T ss_pred cccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHH-HHHHhcCEEEEEeCCeEEeeCCHHHHh
Confidence 9999999999999999999878999999999974 577899999999999999999988753
No 84
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-42 Score=357.78 Aligned_cols=204 Identities=25% Similarity=0.471 Sum_probs=175.6
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCC-------------------------
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS------------------------- 61 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~------------------------- 61 (583)
+.+|+|+|+++++||+++|+||||||||||+++|+|.+. +.+|+|.++|++..
T Consensus 20 ~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (305)
T PRK13651 20 LKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLL--PDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKI 97 (305)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEEeceeccccccccccccccccccccccccccc
Confidence 369999999999999999999999999999999999753 57899999986531
Q ss_pred ---ccccccEEEEccCC-CCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccChH
Q 007952 62 ---KSLKSKIGFVTQDD-VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGG 136 (583)
Q Consensus 62 ---~~~~~~i~yv~Q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~LSgG 136 (583)
...++.+|||+|++ ..+...||+||+.|+.... ..++++..++++++++.+||. +..++ .+.+||||
T Consensus 98 ~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~~LSgG 169 (305)
T PRK13651 98 KKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSM---GVSKEEAKKRAAKYIELVGLDESYLQR-----SPFELSGG 169 (305)
T ss_pred chHHHHHhceEEEeeCcccccccccHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhC-----ChhhCCHH
Confidence 12356799999985 2334579999999875432 245666777899999999996 45554 46799999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcC
Q 007952 137 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 216 (583)
Q Consensus 137 erqRv~ia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 216 (583)
||||++||++|+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||++. .+.+.||++++|++|++++.|+
T Consensus 170 qkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~-~~~~~adrv~vl~~G~i~~~g~ 248 (305)
T PRK13651 170 QKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLD-NVLEWTKRTIFFKDGKIIKDGD 248 (305)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHH-HHHHhCCEEEEEECCEEEEECC
Confidence 999999999999999999999999999999999999999999888999999999964 5778999999999999999999
Q ss_pred hhhHH
Q 007952 217 ASEAM 221 (583)
Q Consensus 217 ~~~~~ 221 (583)
++++.
T Consensus 249 ~~~~~ 253 (305)
T PRK13651 249 TYDIL 253 (305)
T ss_pred HHHHh
Confidence 98864
No 85
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=7.1e-43 Score=334.50 Aligned_cols=208 Identities=27% Similarity=0.472 Sum_probs=176.5
Q ss_pred CccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-----cccccEEEEccCCCC
Q 007952 3 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-----SLKSKIGFVTQDDVL 77 (583)
Q Consensus 3 ~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-----~~~~~i~yv~Q~~~~ 77 (583)
.++..++|++||+++++||+++|+||||||||||||+|+|..+ +.+|+|.++|++++. ..+..++||||...+
T Consensus 12 ~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~--~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~i 89 (237)
T COG0410 12 GYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVR--PRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRI 89 (237)
T ss_pred cccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeeEEECCeecCCCCHHHHHhCCeEeCcccccc
Confidence 3567889999999999999999999999999999999999653 568999999999863 346789999999999
Q ss_pred CCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHc-CCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEE
Q 007952 78 FPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL-GLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFL 156 (583)
Q Consensus 78 ~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illL 156 (583)
||.|||+|||..++..+.. ++......+++.+.| .|.+.++++ ..+|||||||-++|||||+.+|++|+|
T Consensus 90 F~~LTVeENL~~g~~~~~~----~~~~~~~~e~v~~lFP~Lker~~~~-----aG~LSGGEQQMLAiaRALm~~PklLLL 160 (237)
T COG0410 90 FPRLTVEENLLLGAYARRD----KEAQERDLEEVYELFPRLKERRNQR-----AGTLSGGEQQMLAIARALMSRPKLLLL 160 (237)
T ss_pred hhhCcHHHHHhhhhhcccc----cccccccHHHHHHHChhHHHHhcCc-----ccCCChHHHHHHHHHHHHhcCCCEEEe
Confidence 9999999999988654321 111122266666666 355555554 458999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 157 DEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 157 DEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
||||.||-|.-..+|.+.+++++++ |.||+.+.++.. ...+++||.++|.+|++++.|+++++.+
T Consensus 161 DEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~-~Al~iaDr~yvle~Griv~~G~~~eL~~ 226 (237)
T COG0410 161 DEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNAR-FALEIADRGYVLENGRIVLSGTAAELLA 226 (237)
T ss_pred cCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHH-HHHHhhCEEEEEeCCEEEEecCHHHHhc
Confidence 9999999999999999999999976 779999988854 5778999999999999999999998753
No 86
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=2e-42 Score=350.24 Aligned_cols=207 Identities=30% Similarity=0.502 Sum_probs=178.3
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-----------------ccccc
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-----------------SLKSK 67 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-----------------~~~~~ 67 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|.++.. ..++.
T Consensus 16 ~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (257)
T PRK10619 16 GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTR 93 (257)
T ss_pred CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEcccccccccccccccchHHHHHhhc
Confidence 34679999999999999999999999999999999999653 578999999987531 23567
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccc-cccccCccCcccChHHHHHHHHHHH
Q 007952 68 IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ-DTMIGGSFVRGVSGGERKRVCIGNE 146 (583)
Q Consensus 68 i~yv~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-~~~ig~~~~~~LSgGerqRv~ia~~ 146 (583)
++|++|++.+++.+||+||+.++..... ....++.++++.++++.+|+.+.. ++ .+++||||||||++||++
T Consensus 94 i~~v~q~~~l~~~~sv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~~LS~G~~qrv~lara 166 (257)
T PRK10619 94 LTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKQEARERAVKYLAKVGIDERAQGK-----YPVHLSGGQQQRVSIARA 166 (257)
T ss_pred eEEEecCcccCCCCcHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCChhhhhC-----CcccCCHHHHHHHHHHHH
Confidence 9999999999999999999987542111 123455567789999999997653 33 467999999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 147 IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 147 L~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|++++.|++++..
T Consensus 167 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 240 (257)
T PRK10619 167 LAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHVIFLHQGKIEEEGAPEQLF 240 (257)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHHhh
Confidence 99999999999999999999999999999999878999999999975 577789999999999999999988763
No 87
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=1.9e-42 Score=365.75 Aligned_cols=207 Identities=24% Similarity=0.403 Sum_probs=181.7
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCc----cCCc-------cc-cccEEEE
Q 007952 4 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH----PYSK-------SL-KSKIGFV 71 (583)
Q Consensus 4 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~----~~~~-------~~-~~~i~yv 71 (583)
.+...+|+|+||++++||+++|+||||||||||+|+|+|... +++|+|+++|+ ++.. .. ++.++||
T Consensus 34 ~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~--p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~v 111 (382)
T TIGR03415 34 TGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNP--VSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMV 111 (382)
T ss_pred hCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEECCEecccccccCCHHHHHHHhcCCEEEE
Confidence 456779999999999999999999999999999999999653 67899999996 3321 12 2579999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCC
Q 007952 72 TQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINP 151 (583)
Q Consensus 72 ~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p 151 (583)
+|++.++|.+||+||+.++...+ ..++++.+++++++++.+||++..++. +.+||||||||++|||+|+.+|
T Consensus 112 fQ~~~l~p~~Tv~eNi~~~~~~~---g~~~~~~~~~a~e~le~vgL~~~~~~~-----~~~LSgGq~QRV~LARALa~~P 183 (382)
T TIGR03415 112 FQKFALMPWLTVEENVAFGLEMQ---GMPEAERRKRVDEQLELVGLAQWADKK-----PGELSGGMQQRVGLARAFAMDA 183 (382)
T ss_pred ECCCcCCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999886432 234566677899999999998777654 5789999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 152 SLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 152 ~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
++|+|||||+|||+.++.++.+.|++++++ |+|||++|||+. ++.+++|++++|++|+++..|+++++.
T Consensus 184 ~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~-e~~~l~DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 184 DILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD-EALKIGNRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred CEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999875 999999999965 578999999999999999999998874
No 88
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=1.2e-42 Score=342.08 Aligned_cols=194 Identities=35% Similarity=0.542 Sum_probs=169.7
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-------cccccEEEEccCCCCCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-------SLKSKIGFVTQDDVLFP 79 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-------~~~~~i~yv~Q~~~~~~ 79 (583)
+.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. ..++.++|++|++.+++
T Consensus 14 ~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~ 91 (214)
T cd03292 14 TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEEL--PTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLP 91 (214)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhcc
Confidence 579999999999999999999999999999999999653 578999999987642 24567999999999999
Q ss_pred CCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCC
Q 007952 80 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEP 159 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEP 159 (583)
.+|++||+.+....+ ..+.++..++++++++.+|+++..++ .+.+||||||||++||++|+.+|++++||||
T Consensus 92 ~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~laral~~~p~llllDEP 163 (214)
T cd03292 92 DRNVYENVAFALEVT---GVPPREIRKRVPAALELVGLSHKHRA-----LPAELSGGEQQRVAIARAIVNSPTILIADEP 163 (214)
T ss_pred CCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhC-----ChhhcCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 999999999875432 12344556678899999999876665 3579999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeE
Q 007952 160 TSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 211 (583)
Q Consensus 160 tsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~i 211 (583)
|+|||+.++..+.+.|++++++|+|||++||++. .+.+.||++++|++|++
T Consensus 164 t~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~-~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 164 TGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKE-LVDTTRHRVIALERGKL 214 (214)
T ss_pred CCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCCcC
Confidence 9999999999999999999877999999999975 46778999999999974
No 89
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=2.5e-42 Score=345.13 Aligned_cols=206 Identities=33% Similarity=0.547 Sum_probs=177.4
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc---cccccEEEEccCCCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---SLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~---~~~~~i~yv~Q~~~~~~~l 81 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++.. ..++.++|++|++.+++.+
T Consensus 12 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~--~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~ 89 (236)
T TIGR03864 12 GARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLY--VAQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDL 89 (236)
T ss_pred CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCc--CCCceEEEECCEEcccCChhhhhhEEEeCCCCCCcccC
Confidence 3567999999999999999999999999999999999965 3678999999987642 2235799999999988899
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 161 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPts 161 (583)
|++||+.+....+ ..+.++..++++++++.+||++..++. +.+||||||||++||++|+.+|++++|||||+
T Consensus 90 t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrl~laral~~~p~llllDEP~~ 161 (236)
T TIGR03864 90 SVRQNLRYHAALH---GLSRAEARERIAALLARLGLAERADDK-----VRELNGGHRRRVEIARALLHRPALLLLDEPTV 161 (236)
T ss_pred cHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhcCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 9999998765432 233444556788999999998766654 56899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 162 GLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 162 gLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
|||+.++..+.+.|+++++ +|+|||++||++.. +. .||++++|++|++++.|++++..+
T Consensus 162 ~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~~-~~d~i~~l~~G~i~~~~~~~~~~~ 221 (236)
T TIGR03864 162 GLDPASRAAIVAHVRALCRDQGLSVLWATHLVDE-IE-ADDRLVVLHRGRVLADGAAAELRG 221 (236)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhh-Hh-hCCEEEEEeCCeEEEeCCHHHHHH
Confidence 9999999999999999985 58999999999764 54 599999999999999999887653
No 90
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=2e-42 Score=348.23 Aligned_cols=205 Identities=27% Similarity=0.474 Sum_probs=176.1
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCc-----ccEEEECCccCCc------cccccEEEEcc
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTV-----GGSITYNDHPYSK------SLKSKIGFVTQ 73 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~-----~G~I~~~g~~~~~------~~~~~i~yv~Q 73 (583)
+++.+++|+|+++++||+++|+||||||||||+++|+|... +. +|+|.++|+++.. ..++.++|++|
T Consensus 12 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q 89 (247)
T TIGR00972 12 GEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMND--LVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQ 89 (247)
T ss_pred CCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC--CCcCCCCceEEEECCEEccccccchHHHHhheEEEec
Confidence 34579999999999999999999999999999999999763 34 8999999987642 23567999999
Q ss_pred CCCCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCccCcccChHHHHHHHHHHHHHh
Q 007952 74 DDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE----RCQDTMIGGSFVRGVSGGERKRVCIGNEIII 149 (583)
Q Consensus 74 ~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~ 149 (583)
++.+++ +|++||+.+....+. ..+.++..++++++++.+||. +..++ .+++||||||||++||++|+.
T Consensus 90 ~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~~LSgG~~qrv~laral~~ 161 (247)
T TIGR00972 90 KPNPFP-MSIYDNIAYGPRLHG--IKDKKELDEIVEESLKKAALWDEVKDRLHD-----SALGLSGGQQQRLCIARALAV 161 (247)
T ss_pred CcccCC-CCHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCCcchhhHhhC-----CcccCCHHHHHHHHHHHHHhc
Confidence 999998 999999998754321 123445566788999999997 44443 467999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 150 NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 150 ~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
+|++++|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+.||++++|++|++++.|++++..
T Consensus 162 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 162 EPEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQ-QAARISDRTAFFYDGELVEYGPTEQIF 231 (247)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999999999987 489999999975 477899999999999999999988763
No 91
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=8.5e-43 Score=341.06 Aligned_cols=191 Identities=30% Similarity=0.508 Sum_probs=165.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-cccccEEEEccCCC-CCCCCCHH
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-SLKSKIGFVTQDDV-LFPHLTVK 84 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-~~~~~i~yv~Q~~~-~~~~lTv~ 84 (583)
+.+|+|+|+++++||+++|+|||||||||||++|+|... +++|+|.++|.++.. ..++.++|++|++. .+..+||+
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~ 90 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIK--ESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVR 90 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHH
Confidence 679999999999999999999999999999999999653 679999999988643 34567999999974 34467999
Q ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCC
Q 007952 85 ETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLD 164 (583)
Q Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD 164 (583)
||+.+..... . ...++++++++.+||.+..++ .+.+||||||||++||++|+.+|++++|||||+|||
T Consensus 91 e~l~~~~~~~-----~--~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD 158 (205)
T cd03226 91 EELLLGLKEL-----D--AGNEQAETVLKDLDLYALKER-----HPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLD 158 (205)
T ss_pred HHHhhhhhhc-----C--ccHHHHHHHHHHcCCchhcCC-----CchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCC
Confidence 9998764321 1 112567899999999877665 357999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEE
Q 007952 165 STTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 212 (583)
Q Consensus 165 ~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv 212 (583)
+.++..+.+.|++++++|+|||++||++. ++.+.||++++|++|+++
T Consensus 159 ~~~~~~l~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 159 YKNMERVGELIRELAAQGKAVIVITHDYE-FLAKVCDRVLLLANGAIV 205 (205)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEC
Confidence 99999999999999878999999999975 477789999999999875
No 92
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-42 Score=344.54 Aligned_cols=199 Identities=32% Similarity=0.526 Sum_probs=171.7
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCcc-------c-cccEEEEccCCCCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS-------L-KSKIGFVTQDDVLF 78 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~-------~-~~~i~yv~Q~~~~~ 78 (583)
+.+|+|+|+++++||+++|+||||||||||+++|+|... +++|+|.++|+++... . ++.++|++|++.++
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~ 99 (233)
T PRK11629 22 TDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDT--PTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLL 99 (233)
T ss_pred eeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccC
Confidence 579999999999999999999999999999999999653 6799999999886421 1 25699999999999
Q ss_pred CCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeC
Q 007952 79 PHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 158 (583)
Q Consensus 79 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDE 158 (583)
+.+||+||+.+..... ....++.+++++++++.+||++..++ .+.+||||||||++||++|+.+|++|+|||
T Consensus 100 ~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~-----~~~~LSgG~~qrl~la~al~~~p~lllLDE 171 (233)
T PRK11629 100 PDFTALENVAMPLLIG---KKKPAEINSRALEMLAAVGLEHRANH-----RPSELSGGERQRVAIARALVNNPRLVLADE 171 (233)
T ss_pred CCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhhC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 9999999999865432 12344556678999999999876655 357899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcCh
Q 007952 159 PTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 217 (583)
Q Consensus 159 PtsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 217 (583)
||+|||+.++..+.+.|+++++ +|+|||++||++.. +. .+|++++|++|+++..|+.
T Consensus 172 Pt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~-~~-~~~~~~~l~~G~i~~~~~~ 229 (233)
T PRK11629 172 PTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQL-AK-RMSRQLEMRDGRLTAELSL 229 (233)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HH-hhCEEEEEECCEEEEEecc
Confidence 9999999999999999999976 58999999999754 54 4689999999999988864
No 93
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.1e-42 Score=358.41 Aligned_cols=203 Identities=28% Similarity=0.459 Sum_probs=175.3
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc--------------------cccc
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--------------------SLKS 66 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~--------------------~~~~ 66 (583)
+.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|.++.+ ..++
T Consensus 39 ~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~--p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (320)
T PRK13631 39 LVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIK--SKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRR 116 (320)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCEEcccccccccccccccccccchHHHHHh
Confidence 469999999999999999999999999999999999753 678999999976532 2457
Q ss_pred cEEEEccCC--CCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccChHHHHHHHH
Q 007952 67 KIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGERKRVCI 143 (583)
Q Consensus 67 ~i~yv~Q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~LSgGerqRv~i 143 (583)
.++||+|++ .+++ .||+||+.++.... ..+.++..++++++++.+||. +..++ .+.+||||||||++|
T Consensus 117 ~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~~LSgGqkqRvai 187 (320)
T PRK13631 117 RVSMVFQFPEYQLFK-DTIEKDIMFGPVAL---GVKKSEAKKLAKFYLNKMGLDDSYLER-----SPFGLSGGQKRRVAI 187 (320)
T ss_pred cEEEEEECchhcccc-chHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCChhHhcC-----CcccCCHHHHHHHHH
Confidence 799999986 4666 49999998865321 234556667889999999996 44443 467999999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 144 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 144 a~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
||+|+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||++. ++.+.||++++|++|+++..|++++..
T Consensus 188 AraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~-~~~~~adri~vl~~G~i~~~g~~~~~~ 264 (320)
T PRK13631 188 AGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME-HVLEVADEVIVMDKGKILKTGTPYEIF 264 (320)
T ss_pred HHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999999999999878999999999965 467889999999999999999998764
No 94
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-42 Score=347.61 Aligned_cols=213 Identities=25% Similarity=0.403 Sum_probs=177.6
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCC---CcccEEEECCccCCc----cccccEEEEccCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPYSK----SLKSKIGFVTQDDVL 77 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~---~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~ 77 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|..... +.+|+|.++|.++.+ ..++.++|++|++.+
T Consensus 14 ~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~ 93 (250)
T PRK14247 14 GQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNP 93 (250)
T ss_pred CCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCcc
Confidence 3467999999999999999999999999999999999976421 468999999987642 345679999999988
Q ss_pred CCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEe
Q 007952 78 FPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLD 157 (583)
Q Consensus 78 ~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLD 157 (583)
++.+||+||+.+....+.. ..+.++..++++++++.+||.+..+.. -+..+.+||||||||++||++|+.+|++++||
T Consensus 94 ~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LSgG~~qrv~laral~~~p~lllLD 171 (250)
T PRK14247 94 IPNLSIFENVALGLKLNRL-VKSKKELQERVRWALEKAQLWDEVKDR-LDAPAGKLSGGQQQRLCIARALAFQPEVLLAD 171 (250)
T ss_pred CCCCcHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHcCCCcchhhh-hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 9999999999986532211 113344556788999999986421111 12356799999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 158 EPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 158 EPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|||+|||+.++..+.+.|+++++ |+|||++||++. ++.+.||++++|++|++++.|+++++.
T Consensus 172 EP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14247 172 EPTANLDPENTAKIESLFLELKK-DMTIVLVTHFPQ-QAARISDYVAFLYKGQIVEWGPTREVF 233 (250)
T ss_pred CCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEECCeEEEECCHHHHH
Confidence 99999999999999999999865 899999999975 467889999999999999999988764
No 95
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-42 Score=346.89 Aligned_cols=204 Identities=24% Similarity=0.434 Sum_probs=174.7
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-----cccccEEEEccCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-----SLKSKIGFVTQDDVLFP 79 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-----~~~~~i~yv~Q~~~~~~ 79 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++.. ..++.++|++|+..+++
T Consensus 16 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~--~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~ 93 (237)
T PRK11614 16 GKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDP--RATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFS 93 (237)
T ss_pred CCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCC--CCCCceEEECCEecCCCCHHHHHHhCEEEeccCcccCC
Confidence 3567999999999999999999999999999999999965 3678999999987642 13567999999999999
Q ss_pred CCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHc-CCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeC
Q 007952 80 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL-GLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 158 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDE 158 (583)
.+||+||+.+..... ..++..++++++++.+ ++.+..++ .++.||||||||++||++|+.+|++++|||
T Consensus 94 ~~tv~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~~l~~~~~~-----~~~~LS~G~~qrl~la~al~~~p~illlDE 163 (237)
T PRK11614 94 RMTVEENLAMGGFFA-----ERDQFQERIKWVYELFPRLHERRIQ-----RAGTMSGGEQQMLAIGRALMSQPRLLLLDE 163 (237)
T ss_pred CCcHHHHHHHhhhcc-----ChhHHHHHHHHHHHHHHHHHHHHhC-----chhhCCHHHHHHHHHHHHHHhCCCEEEEcC
Confidence 999999998864221 1223344567778877 47654443 357899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 159 PTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 159 PtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
||+|||+.++..+.+.|++++++|+|||++||++. ++.+.||++++|++|++++.|+++++.
T Consensus 164 Pt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 225 (237)
T PRK11614 164 PSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNAN-QALKLADRGYVLENGHVVLEDTGDALL 225 (237)
T ss_pred ccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHhhCCEEEEEeCCEEEeeCCHHHHh
Confidence 99999999999999999999888999999999965 578899999999999999999988764
No 96
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-42 Score=354.82 Aligned_cols=204 Identities=23% Similarity=0.432 Sum_probs=176.4
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc--------cccccEEEEccCC--C
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--------SLKSKIGFVTQDD--V 76 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~--------~~~~~i~yv~Q~~--~ 76 (583)
+.+|+|+|++|++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. ..++.+|||+|++ .
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~ 97 (286)
T PRK13646 20 HQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLK--PTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQ 97 (286)
T ss_pred cCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEECccccccchHHHHHhheEEEecChHhc
Confidence 569999999999999999999999999999999999653 678999999988632 2467899999986 4
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 77 LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 77 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
+++ .||.||+.+..... ..+.++..++++++++.+||. +..++ .+++||||||||++||++|+.+|++|+
T Consensus 98 l~~-~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~~LSgGq~qrv~laraL~~~p~ill 168 (286)
T PRK13646 98 LFE-DTVEREIIFGPKNF---KMNLDEVKNYAHRLLMDLGFSRDVMSQ-----SPFQMSGGQMRKIAIVSILAMNPDIIV 168 (286)
T ss_pred cch-hhHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhC-----CcccCCHHHHHHHHHHHHHHhCCCEEE
Confidence 565 59999999875322 234556667889999999996 45554 467999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
|||||+|||+.++..+.+.|+++++ .|+|||++||++. ++.+.||++++|++|++++.|+++++.+
T Consensus 169 lDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~-~~~~~~dri~~l~~G~i~~~g~~~~~~~ 235 (286)
T PRK13646 169 LDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVIVMKEGSIVSQTSPKELFK 235 (286)
T ss_pred EECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999976 4899999999965 5778999999999999999999887643
No 97
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.3e-42 Score=353.92 Aligned_cols=203 Identities=27% Similarity=0.440 Sum_probs=175.9
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc--------cccccEEEEccCC--C
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--------SLKSKIGFVTQDD--V 76 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~--------~~~~~i~yv~Q~~--~ 76 (583)
+.+|+|+|+++++||+++|+||||||||||+|+|+|... +++|+|.++|+++.. ..++.++|++|++ .
T Consensus 20 ~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~ 97 (287)
T PRK13641 20 KKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLK--PSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQ 97 (287)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEECccccccchHHHHHhceEEEEeChhhh
Confidence 579999999999999999999999999999999999653 679999999987632 2356799999996 3
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 77 LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 77 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
++ .+||.||+.+..... ....++..++++++++.+||+ +..++ .+++||||||||++||++|+.+|++|+
T Consensus 98 ~~-~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~~LSgGq~qrl~laral~~~p~lLl 168 (287)
T PRK13641 98 LF-ENTVLKDVEFGPKNF---GFSEDEAKEKALKWLKKVGLSEDLISK-----SPFELSGGQMRRVAIAGVMAYEPEILC 168 (287)
T ss_pred hc-cchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhhC-----CcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 45 579999998865432 234556667789999999996 45554 467999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.||++++|++|++++.|+++++.
T Consensus 169 LDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13641 169 LDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-DVAEYADDVLVLEHGKLIKHASPKEIF 233 (287)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999878999999999965 577899999999999999999988764
No 98
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.8e-42 Score=340.21 Aligned_cols=198 Identities=30% Similarity=0.577 Sum_probs=171.7
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc---cccccEEEEccCCCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---SLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~---~~~~~i~yv~Q~~~~~~~l 81 (583)
+++.+|+|+|+++++| +++|+||||||||||+++|+|... +.+|+|.++|+++.. ..++.++|++|++.+++.+
T Consensus 11 ~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~ 87 (211)
T cd03264 11 GKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTP--PSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNF 87 (211)
T ss_pred CCEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCCccccchHHHHhheEEecCCCcccccC
Confidence 3457999999999999 999999999999999999999653 578999999987643 3467799999999999999
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 161 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPts 161 (583)
||+||+.+....+ ..+.++..++++++++.+||.+..++ .+.+||||||||++||++|+.+|++++|||||+
T Consensus 88 tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~la~al~~~p~llllDEPt~ 159 (211)
T cd03264 88 TVREFLDYIAWLK---GIPSKEVKARVDEVLELVNLGDRAKK-----KIGSLSGGMRRRVGIAQALVGDPSILIVDEPTA 159 (211)
T ss_pred CHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHCCCHHHHhC-----chhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 9999999865433 12334445678899999999876665 357899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEc
Q 007952 162 GLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 215 (583)
Q Consensus 162 gLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 215 (583)
|||+.++..+.+.|+++++ ++|||++||++. .+.+.+|++++|++|++++.|
T Consensus 160 ~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 160 GLDPEERIRFRNLLSELGE-DRIVILSTHIVE-DVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred cCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHH-HHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999976 599999999975 467889999999999998765
No 99
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=3.8e-42 Score=345.10 Aligned_cols=211 Identities=27% Similarity=0.346 Sum_probs=175.5
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----c-ccccEEEEccCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----S-LKSKIGFVTQDDVLFP 79 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~-~~~~i~yv~Q~~~~~~ 79 (583)
+++.+|+|+|+++++||+++|+||||||||||+|+|+|....++.+|+|.++|+++.. . .+..++|++|++.+++
T Consensus 11 ~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 90 (243)
T TIGR01978 11 EDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIP 90 (243)
T ss_pred CCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeeccccccC
Confidence 3567999999999999999999999999999999999974223678999999987642 1 2345899999999999
Q ss_pred CCCHHHHHHHHHHcCCC---C-CCCHHHHHHHHHHHHHHcCCCc-cccccccCccCc-ccChHHHHHHHHHHHHHhCCCE
Q 007952 80 HLTVKETLTYAALLRLP---N-TLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVR-GVSGGERKRVCIGNEIIINPSL 153 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~---~-~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~-~LSgGerqRv~ia~~L~~~p~i 153 (583)
.+|++|++.+....... . ..+.++..+++.++++.+||.+ ..++. +. +||||||||++||++|+.+|++
T Consensus 91 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~~LS~G~~qrl~la~al~~~p~l 165 (243)
T TIGR01978 91 GVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRS-----VNEGFSGGEKKRNEILQMALLEPKL 165 (243)
T ss_pred CcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccc-----cccCcCHHHHHHHHHHHHHhcCCCE
Confidence 99999999876432211 0 1123344567889999999973 44442 44 5999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhh-cCeEEEEcCCeEEEEcChhhHH
Q 007952 154 LFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHK-FDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 154 llLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~-~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
++|||||+|||+.++..+.+.|++++++|+|||++||++. .+.+. ||++++|++|++++.|++++..
T Consensus 166 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (243)
T TIGR01978 166 AILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQR-LLNYIKPDYVHVLLDGRIVKSGDVELAK 233 (243)
T ss_pred EEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHH-HHHhhcCCeEEEEeCCEEEEecCHHHhc
Confidence 9999999999999999999999999888999999999975 46666 7999999999999999987543
No 100
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-42 Score=347.84 Aligned_cols=212 Identities=27% Similarity=0.469 Sum_probs=183.3
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCC---CcccEEEECCccCC---c----c-ccccEEEEcc
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPYS---K----S-LKSKIGFVTQ 73 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~---~~~G~I~~~g~~~~---~----~-~~~~i~yv~Q 73 (583)
+..++++||||++++||++||+|+|||||||+.++|+|.++.+ ..+|+|.++|+++. + . ..+.|+||+|
T Consensus 16 g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ 95 (316)
T COG0444 16 GVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQ 95 (316)
T ss_pred ccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEc
Confidence 3568999999999999999999999999999999999987633 26799999999753 2 1 2367999999
Q ss_pred CC--CCCCCCCHHHHHHHHHHcCCCCCC-CHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhC
Q 007952 74 DD--VLFPHLTVKETLTYAALLRLPNTL-TKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIIN 150 (583)
Q Consensus 74 ~~--~~~~~lTv~e~l~~~~~~~~~~~~-~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~ 150 (583)
|+ .+.|.+||.+.+.-..... ... .+++..+++.++|+.+||.+-.. +.+.++.+|||||||||.||.||+.+
T Consensus 96 ~p~~sLnPv~~Ig~Qi~E~l~~h--~~~~~~~ea~~~a~~~L~~Vgi~~~~~--~~~~YPhelSGGMrQRV~IAmala~~ 171 (316)
T COG0444 96 DPMTSLNPVMTIGDQIAEVLRLH--GKGLSKKEAKERAIELLELVGIPDPER--RLKSYPHELSGGMRQRVMIAMALALN 171 (316)
T ss_pred CchhhcCChhhHHHHHHHHHHHh--hcchhhHHHHHHHHHHHHHcCCCCHHH--HHhhCCcccCCcHHHHHHHHHHHhCC
Confidence 96 6899999999887765432 122 46677888999999999986432 33568999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 151 PSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 151 p~illLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|++||.||||++||...+.+|+++|+++++ .|.++|++|||+. .+.++||+|.+|..|++|+.|+++++.
T Consensus 172 P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~-vva~~aDri~VMYaG~iVE~g~~~~i~ 242 (316)
T COG0444 172 PKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLG-VVAEIADRVAVMYAGRIVEEGPVEEIF 242 (316)
T ss_pred CCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceEEEEECcEEEEeCCHHHHh
Confidence 999999999999999999999999999986 5999999999975 588999999999999999999999875
No 101
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=3.2e-42 Score=341.15 Aligned_cols=197 Identities=28% Similarity=0.489 Sum_probs=171.1
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-------cccccEEEEccCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-------SLKSKIGFVTQDDVL 77 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-------~~~~~i~yv~Q~~~~ 77 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|.. ++++|+|.++|+++.. ..++.++|++|++.+
T Consensus 13 ~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~--~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~ 90 (222)
T PRK10908 13 GGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIE--RPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHL 90 (222)
T ss_pred CCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCceEEEECCEEcccCChhHHHHHHhheEEEecCccc
Confidence 3467999999999999999999999999999999999965 3679999999987642 135679999999998
Q ss_pred CCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEe
Q 007952 78 FPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLD 157 (583)
Q Consensus 78 ~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLD 157 (583)
++.+|++||+.+....+ ..+.++..++++++++.+|+.+..++ .+..||||||||++||++|+.+|++|+||
T Consensus 91 ~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~laral~~~p~llllD 162 (222)
T PRK10908 91 LMDRTVYDNVAIPLIIA---GASGDDIRRRVSAALDKVGLLDKAKN-----FPIQLSGGEQQRVGIARAVVNKPAVLLAD 162 (222)
T ss_pred cccccHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhC-----CchhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 88999999998865432 23344555678899999999876554 45799999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEE
Q 007952 158 EPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 212 (583)
Q Consensus 158 EPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv 212 (583)
|||+|||+.++..+.+.|++++++|.|||++||++. ++.+.||++++|++|+++
T Consensus 163 EPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 163 EPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIG-LISRRSYRMLTLSDGHLH 216 (222)
T ss_pred CCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEc
Confidence 999999999999999999999877899999999975 477889999999999975
No 102
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=3.5e-42 Score=347.40 Aligned_cols=207 Identities=30% Similarity=0.479 Sum_probs=178.4
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-----------------ccccc
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-----------------SLKSK 67 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-----------------~~~~~ 67 (583)
+++.+|+|+|+++++||+++|+||||||||||+|+|+|... +.+|+|.++|+++.+ ..++.
T Consensus 11 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~ 88 (252)
T TIGR03005 11 GILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEP--IDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNK 88 (252)
T ss_pred CCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccccccccccccchhHHHHHhhC
Confidence 34679999999999999999999999999999999999653 578999999987631 23567
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHH
Q 007952 68 IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEI 147 (583)
Q Consensus 68 i~yv~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L 147 (583)
++|++|++.+++.+|+.||+.++.... .....++..++++++++.+|+.+..++ .+.+||||||||++||++|
T Consensus 89 i~~v~q~~~~~~~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~-----~~~~LS~G~~qrv~laral 161 (252)
T TIGR03005 89 IGMVFQSFNLFPHKTVLDNVTEAPVLV--LGMARAEAEKRAMELLDMVGLADKADH-----MPAQLSGGQQQRVAIARAL 161 (252)
T ss_pred eEEEecCcccCCCCcHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCChhHhhc-----ChhhcCHHHHHHHHHHHHH
Confidence 999999999999999999998853211 112344555678899999999876654 4579999999999999999
Q ss_pred HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 148 IINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 148 ~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+++|++++|++|++++.|++++..
T Consensus 162 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 235 (252)
T TIGR03005 162 AMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMG-FAREFADRVCFFDKGRIVEQGKPDEIF 235 (252)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999999999875 899999999975 477889999999999999999987763
No 103
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.5e-42 Score=347.08 Aligned_cols=202 Identities=32% Similarity=0.500 Sum_probs=174.7
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHH
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVK 84 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~ 84 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|... +++|+|.++|+++.. ..+.++|++|++.+++.+||+
T Consensus 12 ~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~-~~~~~~~v~q~~~~~~~~tv~ 88 (255)
T PRK11248 12 GGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP--YQHGSITLDGKPVEG-PGAERGVVFQNEGLLPWRNVQ 88 (255)
T ss_pred CCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCC-CCCcEEEEeCCCccCCCCcHH
Confidence 34679999999999999999999999999999999999653 578999999988753 335689999999999999999
Q ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCC
Q 007952 85 ETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLD 164 (583)
Q Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD 164 (583)
||+.+....+ ..+.++..+++.++++.+||.+..++ .+.+||||||||++||++|+.+|++|+|||||+|||
T Consensus 89 e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~-----~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD 160 (255)
T PRK11248 89 DNVAFGLQLA---GVEKMQRLEIAHQMLKKVGLEGAEKR-----YIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALD 160 (255)
T ss_pred HHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhHhhC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence 9998865432 13344556678999999999876654 457999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhhcCeEEEEc--CCeEEEEcChh
Q 007952 165 STTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLG--KGSLLYFGKAS 218 (583)
Q Consensus 165 ~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~--~G~iv~~G~~~ 218 (583)
+.++..+.+.|+++++ +|+|||++||++. ++.+.||++++|+ +|+++..++.+
T Consensus 161 ~~~~~~l~~~L~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 161 AFTREQMQTLLLKLWQETGKQVLLITHDIE-EAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 9999999999999864 5899999999975 5778999999998 59999888754
No 104
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=2.5e-42 Score=339.57 Aligned_cols=197 Identities=34% Similarity=0.581 Sum_probs=170.2
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc------cccccEEEEccCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK------SLKSKIGFVTQDDVLF 78 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~------~~~~~i~yv~Q~~~~~ 78 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. ..++.++|++|++.++
T Consensus 11 ~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 88 (213)
T cd03262 11 GDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEE--PDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLF 88 (213)
T ss_pred CCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCccchhHHHHHhcceEEecccccC
Confidence 34679999999999999999999999999999999999653 578999999987631 2357799999999999
Q ss_pred CCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeC
Q 007952 79 PHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 158 (583)
Q Consensus 79 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDE 158 (583)
+.+|++||+.+..... ...+.++..++++++++.+|+.+..++ .+++||||||||++||++|+.+|++|+|||
T Consensus 89 ~~~t~~e~l~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~la~al~~~p~llllDE 161 (213)
T cd03262 89 PHLTVLENITLAPIKV--KGMSKAEAEERALELLEKVGLADKADA-----YPAQLSGGQQQRVAIARALAMNPKVMLFDE 161 (213)
T ss_pred CCCcHHHHHHhHHHHh--cCCCHHHHHHHHHHHHHHcCCHhHhhh-----CccccCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 9999999998864311 122344555678899999999876655 357999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeE
Q 007952 159 PTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 211 (583)
Q Consensus 159 PtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~i 211 (583)
||+|||+.++..+.+.|++++++|+|||++||++. ++.+.||++++|++|++
T Consensus 162 P~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~-~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 162 PTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMG-FAREVADRVIFMDDGRI 213 (213)
T ss_pred CccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCCcC
Confidence 99999999999999999999888999999999975 57789999999999974
No 105
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.9e-42 Score=344.99 Aligned_cols=205 Identities=31% Similarity=0.500 Sum_probs=176.5
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCC----------ccccccEEEEccC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----------KSLKSKIGFVTQD 74 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~----------~~~~~~i~yv~Q~ 74 (583)
+++.+|+|+|+++++||+++|+||||||||||+|+|+|.. ++.+|+|.++|+++. ...++.++|++|+
T Consensus 13 ~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~--~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~ 90 (242)
T PRK11124 13 GAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLE--MPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQ 90 (242)
T ss_pred CCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCceEEEECCEecccccccchhhHHHHHhheEEEecC
Confidence 3567999999999999999999999999999999999965 367899999998752 1235679999999
Q ss_pred CCCCCCCCHHHHHHHHH-HcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCE
Q 007952 75 DVLFPHLTVKETLTYAA-LLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSL 153 (583)
Q Consensus 75 ~~~~~~lTv~e~l~~~~-~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~i 153 (583)
+.+++.+||.||+.+.. ... ....++..+++.++++.+|+++..++. +++||||||||++||++|+.+|++
T Consensus 91 ~~~~~~~tv~e~i~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrv~laral~~~p~l 162 (242)
T PRK11124 91 YNLWPHLTVQQNLIEAPCRVL---GLSKDQALARAEKLLERLRLKPYADRF-----PLHLSGGQQQRVAIARALMMEPQV 162 (242)
T ss_pred ccccCCCcHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999997532 221 123444556789999999998766653 579999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhH
Q 007952 154 LFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 220 (583)
Q Consensus 154 llLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 220 (583)
++|||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.||++++|++|++++.|++++.
T Consensus 163 lilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 163 LLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVE-VARKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred EEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHHh
Confidence 9999999999999999999999999877999999999975 46678999999999999999988763
No 106
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=5.5e-42 Score=343.81 Aligned_cols=207 Identities=27% Similarity=0.430 Sum_probs=176.4
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-----cccccEEEEccCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-----SLKSKIGFVTQDDVLFP 79 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-----~~~~~i~yv~Q~~~~~~ 79 (583)
+++++|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|.++.. ..++.++|++|++.+++
T Consensus 13 ~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~ 90 (242)
T TIGR03411 13 DGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTR--PDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFE 90 (242)
T ss_pred CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCeecCCCCHHHHHhcCeeEeccccccCC
Confidence 34679999999999999999999999999999999999653 578999999987642 12456999999999999
Q ss_pred CCCHHHHHHHHHHcCCC--C---CCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEE
Q 007952 80 HLTVKETLTYAALLRLP--N---TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLL 154 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~--~---~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~il 154 (583)
.+||+||+.+....... . ....++.+++++++++.+|+++..++ .++.||||||||++||++|+.+|++|
T Consensus 91 ~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~Ge~qrv~laral~~~p~~l 165 (242)
T TIGR03411 91 NLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADR-----LAGLLSHGQKQWLEIGMLLMQDPKLL 165 (242)
T ss_pred CCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcC-----ChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999886432100 0 01223445678999999999876665 35799999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhH
Q 007952 155 FLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 220 (583)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 220 (583)
+|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+.||++++|++|+++..|++++.
T Consensus 166 llDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~g~~~~~~~~~~~ 229 (242)
T TIGR03411 166 LLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDME-FVRSIADKVTVLHQGSVLAEGSLDQV 229 (242)
T ss_pred EecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHH-HHHHhCCEEEEEECCeEEeeCCHHHH
Confidence 99999999999999999999999976 789999999965 57789999999999999999998775
No 107
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=1.8e-42 Score=340.66 Aligned_cols=201 Identities=27% Similarity=0.504 Sum_probs=167.2
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCC--CCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLF--PHLT 82 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~--~~lT 82 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|... +++|+|.++|+++. ..++.++|++|++.+. ..+|
T Consensus 10 ~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~-~~~~~i~~v~q~~~~~~~~~~t 86 (213)
T cd03235 10 GGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLK--PTSGSIRVFGKPLE-KERKRIGYVPQRRSIDRDFPIS 86 (213)
T ss_pred CCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCccHH-HHHhheEEeccccccccCCCCc
Confidence 34679999999999999999999999999999999999653 57899999998764 3466799999998763 3479
Q ss_pred HHHHHHHHHHcCCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 007952 83 VKETLTYAALLRLPN-TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 161 (583)
Q Consensus 83 v~e~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPts 161 (583)
|+||+.+........ ....++..++++++++.+|+++..++ .+.+||||||||++||++|+.+|++|+|||||+
T Consensus 87 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LSgG~~qrv~la~al~~~p~llllDEPt~ 161 (213)
T cd03235 87 VRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADR-----QIGELSGGQQQRVLLARALVQDPDLLLLDEPFA 161 (213)
T ss_pred HHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhC-----CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 999998754321100 01123345678899999999866655 357899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEc
Q 007952 162 GLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 215 (583)
Q Consensus 162 gLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 215 (583)
|||+.++..+.+.|++++++|+|||++||++. ++.+.||++++|++| +++.|
T Consensus 162 ~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 162 GVDPKTQEDIYELLRELRREGMTILVVTHDLG-LVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred cCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEcCc-EeecC
Confidence 99999999999999999878999999999975 577889999999876 66654
No 108
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=5.8e-42 Score=357.89 Aligned_cols=210 Identities=26% Similarity=0.456 Sum_probs=179.6
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCC--cccEEEECCccCCc----c---cc-ccEEEEccCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT--VGGSITYNDHPYSK----S---LK-SKIGFVTQDD 75 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~--~~G~I~~~g~~~~~----~---~~-~~i~yv~Q~~ 75 (583)
...+|+||||+|++||+++|+|+||||||||+++|+|... +. .+|+|.++|+++.. . .+ +.|+||+|++
T Consensus 28 ~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~-p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~ 106 (330)
T PRK09473 28 DVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLA-ANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDP 106 (330)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC-CCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCc
Confidence 4579999999999999999999999999999999999764 22 48999999998742 1 22 4799999997
Q ss_pred --CCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCE
Q 007952 76 --VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSL 153 (583)
Q Consensus 76 --~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~i 153 (583)
.+.|.+|+.+++........ ..++++..+++.++++.+||.+..+. -+.++++||||||||++||+||+.+|++
T Consensus 107 ~~~l~p~~~v~~~i~~~~~~~~--~~~~~~~~~~~~~~L~~vgL~~~~~~--~~~~p~~LSgG~~QRv~IArAL~~~P~l 182 (330)
T PRK09473 107 MTSLNPYMRVGEQLMEVLMLHK--GMSKAEAFEESVRMLDAVKMPEARKR--MKMYPHEFSGGMRQRVMIAMALLCRPKL 182 (330)
T ss_pred hhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCCChHHH--hcCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 68899999999987654321 23556666788999999999753322 1356889999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 154 LFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 154 llLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|++||||+|||+.++.++++.|++++++ |.|+|++|||+. .+.+++|++++|++|++++.|+++++.
T Consensus 183 lilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~~Dri~vm~~G~ive~g~~~~i~ 250 (330)
T PRK09473 183 LIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLG-VVAGICDKVLVMYAGRTMEYGNARDVF 250 (330)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999875 899999999975 467789999999999999999998875
No 109
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6e-42 Score=345.90 Aligned_cols=213 Identities=25% Similarity=0.414 Sum_probs=176.6
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCC---CcccEEEECCccCC--c----cccccEEEEccCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPYS--K----SLKSKIGFVTQDD 75 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~---~~~G~I~~~g~~~~--~----~~~~~i~yv~Q~~ 75 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|...+. +++|+|.++|+++. + ..++.++|++|++
T Consensus 15 ~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~ 94 (253)
T PRK14267 15 GSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYP 94 (253)
T ss_pred CCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCC
Confidence 3467999999999999999999999999999999999976421 25899999998764 1 2456799999999
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 76 VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 76 ~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
.+++.+||.||+.+....+. ...+.++..++++++++.+|+.+..... -+..+.+||||||||++||++|+.+|++++
T Consensus 95 ~~~~~~tv~enl~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LS~G~~qrv~laral~~~p~lll 172 (253)
T PRK14267 95 NPFPHLTIYDNVAIGVKLNG-LVKSKKELDERVEWALKKAALWDEVKDR-LNDYPSNLSGGQRQRLVIARALAMKPKILL 172 (253)
T ss_pred ccCCCCcHHHHHHHHHHhcC-ccCCHHHHHHHHHHHHHHcCCccchhhh-hccChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999999988654321 0113344556788899999985321111 123567999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+.||++++|++|++++.|++++..
T Consensus 173 lDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (253)
T PRK14267 173 MDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPA-QAARVSDYVAFLYLGKLIEVGPTRKVF 236 (253)
T ss_pred EcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999975 699999999975 477889999999999999999988764
No 110
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.2e-42 Score=356.38 Aligned_cols=210 Identities=27% Similarity=0.420 Sum_probs=178.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCC--CcccEEEECCccCCc----c----ccccEEEEccCC-
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP--TVGGSITYNDHPYSK----S----LKSKIGFVTQDD- 75 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~--~~~G~I~~~g~~~~~----~----~~~~i~yv~Q~~- 75 (583)
+.+|+||||+|++||+++|+|+||||||||+++|+|.+..+ +++|+|.++|+++.. . .++.++||+|++
T Consensus 20 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~ 99 (326)
T PRK11022 20 FRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPM 99 (326)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCch
Confidence 46999999999999999999999999999999999976422 368999999998642 1 124699999997
Q ss_pred -CCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEE
Q 007952 76 -VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLL 154 (583)
Q Consensus 76 -~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~il 154 (583)
.+.|.+||.+++....... .....++.++++.++++.+||.+..+. -+.++++|||||||||+||+||+.+|++|
T Consensus 100 ~~l~p~~~v~~~i~~~l~~~--~~~~~~~~~~~~~~~L~~~gL~~~~~~--l~~~p~~LSgGq~QRv~iArAL~~~P~ll 175 (326)
T PRK11022 100 TSLNPCYTVGFQIMEAIKVH--QGGNKKTRRQRAIDLLNQVGIPDPASR--LDVYPHQLSGGMSQRVMIAMAIACRPKLL 175 (326)
T ss_pred hhcCCcCCHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHCCCCChHHH--HhCCchhCCHHHHHHHHHHHHHHhCCCEE
Confidence 5899999999887654332 123456667789999999999752211 13467899999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 155 FLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
++||||+|||+.++.++++.|+++++ .|.|+|++|||+. .+.+++|+|++|++|++++.|+++++.
T Consensus 176 ilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~-~~~~~adri~vm~~G~ive~g~~~~~~ 242 (326)
T PRK11022 176 IADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLA-LVAEAAHKIIVMYAGQVVETGKAHDIF 242 (326)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 99999999999999999999999986 4999999999975 467899999999999999999998875
No 111
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=4.5e-42 Score=347.74 Aligned_cols=206 Identities=28% Similarity=0.479 Sum_probs=176.6
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPH 80 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~ 80 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|.++.+ ..++.++|++|++.+++.
T Consensus 13 ~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~ 90 (258)
T PRK13548 13 GGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELS--PDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFP 90 (258)
T ss_pred CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEcccCCHHHhhhheEEEccCCcCCCC
Confidence 45679999999999999999999999999999999999653 678999999987642 234679999999988888
Q ss_pred CCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHH------hCCCEE
Q 007952 81 LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEII------INPSLL 154 (583)
Q Consensus 81 lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~------~~p~il 154 (583)
+||+||+.+..... ....++.+++++++++.+||.+..++. +.+||||||||++||++|+ .+|++|
T Consensus 91 ~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGe~qrv~la~al~~~~~~~~~p~ll 162 (258)
T PRK13548 91 FTVEEVVAMGRAPH---GLSRAEDDALVAAALAQVDLAHLAGRD-----YPQLSGGEQQRVQLARVLAQLWEPDGPPRWL 162 (258)
T ss_pred CCHHHHHHhhhccc---CCCcHHHHHHHHHHHHHcCCHhHhcCC-----cccCCHHHHHHHHHHHHHhcccccCCCCCEE
Confidence 99999998864321 112233456688999999998766654 5799999999999999999 599999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHH-HCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 155 FLDEPTSGLDSTTALRIVQMLQDIA-EAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~~l~~l~-~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
+|||||+|||+.++..+.+.|++++ ++|+|||++||++. ++.++||++++|++|++++.|++++..
T Consensus 163 lLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (258)
T PRK13548 163 LLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLN-LAARYADRIVLLHQGRLVADGTPAEVL 229 (258)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhcCEEEEEECCEEEeeCCHHHHh
Confidence 9999999999999999999999998 67999999999975 477899999999999999999987754
No 112
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=4.1e-42 Score=342.29 Aligned_cols=200 Identities=31% Similarity=0.470 Sum_probs=171.3
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHHHHHH
Q 007952 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTY 89 (583)
Q Consensus 10 L~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~l~~ 89 (583)
|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|+++... ....+|++|++.+++.+||+||+.+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~-~~~~~~v~q~~~l~~~~tv~e~l~~ 77 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQ--PTSGGVILEGKQITEP-GPDRMVVFQNYSLLPWLTVRENIAL 77 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCC-ChhheEEecCcccCCCCCHHHHHHH
Confidence 589999999999999999999999999999999753 6799999999887532 2235899999999999999999988
Q ss_pred HHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHH
Q 007952 90 AALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTAL 169 (583)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~~~~ 169 (583)
......+ ..++++..++++++++.+||++..++. +.+||||||||++||++|+.+|++|+|||||+|||+.++.
T Consensus 78 ~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~ 151 (230)
T TIGR01184 78 AVDRVLP-DLSKSERRAIVEEHIALVGLTEAADKR-----PGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRG 151 (230)
T ss_pred HHHhccc-CCCHHHHHHHHHHHHHHcCCHHHHcCC-----hhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHH
Confidence 6421111 233445566788999999998766653 5789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhh
Q 007952 170 RIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 219 (583)
Q Consensus 170 ~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 219 (583)
.+.+.|++++++ |+|||++||++. ++.+.||++++|++|+++..|+..+
T Consensus 152 ~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~ 201 (230)
T TIGR01184 152 NLQEELMQIWEEHRVTVLMVTHDVD-EALLLSDRVVMLTNGPAANIGQILE 201 (230)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeCCcEecccCcee
Confidence 999999999765 899999999975 5778999999999999998886554
No 113
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=4.9e-42 Score=339.46 Aligned_cols=194 Identities=31% Similarity=0.569 Sum_probs=167.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----c---cc-ccEEEEccCCCCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----S---LK-SKIGFVTQDDVLF 78 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~---~~-~~i~yv~Q~~~~~ 78 (583)
+++|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. . .+ +.++|++|++.++
T Consensus 18 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 95 (221)
T TIGR02211 18 TRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDN--PTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLL 95 (221)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccC
Confidence 579999999999999999999999999999999999653 579999999987642 1 12 5799999999999
Q ss_pred CCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeC
Q 007952 79 PHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 158 (583)
Q Consensus 79 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDE 158 (583)
+.+||+||+.+....+ .....+..+++.++++.+|+.+..++ .++.||||||||++||++|+.+|++|+|||
T Consensus 96 ~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~laral~~~p~illlDE 167 (221)
T TIGR02211 96 PDFTALENVAMPLLIG---KKSVKEAKERAYEMLEKVGLEHRINH-----RPSELSGGERQRVAIARALVNQPSLVLADE 167 (221)
T ss_pred CCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhC-----ChhhCCHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 9999999998865432 12334445678899999999876654 357999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEE
Q 007952 159 PTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 212 (583)
Q Consensus 159 PtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv 212 (583)
||+|||+.++..+.+.|++++++ |+|||++||++. .+ +.+|++++|++|+++
T Consensus 168 Pt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~-~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 168 PTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE-LA-KKLDRVLEMKDGQLF 220 (221)
T ss_pred CCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-hhcCEEEEEeCCEec
Confidence 99999999999999999999864 899999999975 35 458999999999975
No 114
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.8e-42 Score=356.50 Aligned_cols=207 Identities=27% Similarity=0.467 Sum_probs=179.5
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-------cccccEEEEccCC--C
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-------SLKSKIGFVTQDD--V 76 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-------~~~~~i~yv~Q~~--~ 76 (583)
.+.+|+|||++|++||+++|+|+||||||||+++|+|.+. +.+|+|.++|+++.+ ..++.++||+|++ .
T Consensus 27 ~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~--p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~ 104 (327)
T PRK11308 27 LVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIET--PTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGS 104 (327)
T ss_pred ceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCC--CCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhh
Confidence 3579999999999999999999999999999999999753 578999999988642 2456799999997 6
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 77 LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 77 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
+.|.+||.+++....... ....+++.++++.++++.+||.+ ..+ .++++||||||||++||+||+.+|++|+
T Consensus 105 l~p~~~v~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gL~~~~~~-----~~p~~LSgGq~QRv~iArAL~~~P~lLi 177 (327)
T PRK11308 105 LNPRKKVGQILEEPLLIN--TSLSAAERREKALAMMAKVGLRPEHYD-----RYPHMFSGGQRQRIAIARALMLDPDVVV 177 (327)
T ss_pred cCCccCHHHHHHHHHHHc--cCCCHHHHHHHHHHHHHHCCCChHHhc-----CCCccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 899999999998765432 12345566778999999999963 334 3578999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
+||||+|||..++.++++.|++++++ |.|||++|||+. .+.++||+|++|++|++++.|+++++.+
T Consensus 178 lDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~adrv~vm~~G~ive~g~~~~~~~ 244 (327)
T PRK11308 178 ADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLS-VVEHIADEVMVMYLGRCVEKGTKEQIFN 244 (327)
T ss_pred EECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 99999999999999999999999875 999999999965 4677899999999999999999988753
No 115
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.2e-42 Score=350.78 Aligned_cols=206 Identities=28% Similarity=0.498 Sum_probs=177.6
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCC------ccccccEEEEccCCC-CC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS------KSLKSKIGFVTQDDV-LF 78 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~------~~~~~~i~yv~Q~~~-~~ 78 (583)
++.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|+++. ...++.+||++|++. .+
T Consensus 18 ~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~--p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~ 95 (283)
T PRK13636 18 GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILK--PSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQL 95 (283)
T ss_pred CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCccEEEECCEECCCCcchHHHHHhhEEEEecCcchhh
Confidence 4679999999999999999999999999999999999653 67899999998863 124577999999973 23
Q ss_pred CCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeC
Q 007952 79 PHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 158 (583)
Q Consensus 79 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDE 158 (583)
...||+||+.+..... ..+.++..++++++++.+||.+..++ .++.||||||||++||++|+.+|++|+|||
T Consensus 96 ~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~-----~~~~LS~G~~qrl~laraL~~~p~lLilDE 167 (283)
T PRK13636 96 FSASVYQDVSFGAVNL---KLPEDEVRKRVDNALKRTGIEHLKDK-----PTHCLSFGQKKRVAIAGVLVMEPKVLVLDE 167 (283)
T ss_pred ccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhC-----CcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 4579999998864322 23455556778999999999876665 467999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 159 PTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 159 PtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|++++.|++++...
T Consensus 168 Pt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~-~~~~~~dri~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 168 PTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDID-IVPLYCDNVFVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred CccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999875 899999999975 4677899999999999999999988654
No 116
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.8e-42 Score=348.13 Aligned_cols=206 Identities=22% Similarity=0.430 Sum_probs=176.1
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc------cccccEEEEccCCCC-
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK------SLKSKIGFVTQDDVL- 77 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~------~~~~~i~yv~Q~~~~- 77 (583)
+++.+|+|+|+++++||+++|+||||||||||+|+|+|... +.+|+|.++|+++.. ..++.++|++|++..
T Consensus 12 ~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 89 (271)
T PRK13638 12 QDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLR--PQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQ 89 (271)
T ss_pred CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCccEEEECCEEcccccCCHHHHHhheEEEeeChhhc
Confidence 45679999999999999999999999999999999999653 679999999988631 235679999999753
Q ss_pred CCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEe
Q 007952 78 FPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLD 157 (583)
Q Consensus 78 ~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLD 157 (583)
+...|+.||+.+..... ..+.++..++++++++.+|+.+..++ .+..||||||||++||++|+.+|++|+||
T Consensus 90 ~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LSgG~~qrl~laraL~~~p~lllLD 161 (271)
T PRK13638 90 IFYTDIDSDIAFSLRNL---GVPEAEITRRVDEALTLVDAQHFRHQ-----PIQCLSHGQKKRVAIAGALVLQARYLLLD 161 (271)
T ss_pred cccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHhHhcC-----CchhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 34568999998864332 22344555678899999999876665 35799999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 158 EPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 158 EPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|||+|||+.++..+.+.|++++++|+|||++||++. ++.+.||++++|++|++++.|++++..
T Consensus 162 EPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 224 (271)
T PRK13638 162 EPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDID-LIYEISDAVYVLRQGQILTHGAPGEVF 224 (271)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999877999999999975 477889999999999999999988764
No 117
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=6.1e-42 Score=339.35 Aligned_cols=200 Identities=30% Similarity=0.500 Sum_probs=174.7
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHH
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVK 84 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~ 84 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++....++.++|++|++.+++.+|++
T Consensus 11 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~--~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~~~~~~t~~ 88 (223)
T TIGR03740 11 GKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGIL--RPTSGEIIFDGHPWTRKDLHKIGSLIESPPLYENLTAR 88 (223)
T ss_pred CCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC--CCCceEEEECCEeccccccccEEEEcCCCCccccCCHH
Confidence 3467999999999999999999999999999999999965 36789999999876533345799999999999999999
Q ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCC
Q 007952 85 ETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLD 164 (583)
Q Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD 164 (583)
||+.+....+. .+ .+++.++++.+|+++..++ .+..||||||||++||++++.+|++++|||||+|||
T Consensus 89 ~~~~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD 156 (223)
T TIGR03740 89 ENLKVHTTLLG---LP----DSRIDEVLNIVDLTNTGKK-----KAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLD 156 (223)
T ss_pred HHHHHHHHHcC---CC----HHHHHHHHHHcCCcHHHhh-----hHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCC
Confidence 99987654321 11 2457889999999876665 357899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhh
Q 007952 165 STTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 219 (583)
Q Consensus 165 ~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 219 (583)
+.++..+.+.|++++++|+|||++||++. ++.+.||++++|++|++++.|++++
T Consensus 157 ~~~~~~l~~~L~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 157 PIGIQELRELIRSFPEQGITVILSSHILS-EVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEeCCEEEEecChhh
Confidence 99999999999999877999999999975 4778999999999999999998753
No 118
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=6.8e-42 Score=347.85 Aligned_cols=206 Identities=23% Similarity=0.440 Sum_probs=176.0
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-------cccccEEEEccCC--C
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-------SLKSKIGFVTQDD--V 76 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-------~~~~~i~yv~Q~~--~ 76 (583)
++.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. ..++.++|++|++ .
T Consensus 23 ~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~ 100 (265)
T TIGR02769 23 RAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK--PAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSA 100 (265)
T ss_pred ceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhh
Confidence 4679999999999999999999999999999999999653 678999999987642 1356799999996 4
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 77 LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 77 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
+++.+||+||+.+..... .....++..++++++++.+|+. +..+. .+.+||||||||++||++|+.+|++|+
T Consensus 101 ~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~~LSgGe~qrv~laral~~~p~ill 173 (265)
T TIGR02769 101 VNPRMTVRQIIGEPLRHL--TSLDESEQKARIAELLDMVGLRSEDADK-----LPRQLSGGQLQRINIARALAVKPKLIV 173 (265)
T ss_pred cCCCCCHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCCChhhhhC-----ChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 678899999998754321 1123344556789999999996 45554 457999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|||||+|||+.++..+.+.|++++++ |+|||++||++. .+.++||++++|++|++++.|+++++.
T Consensus 174 LDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 239 (265)
T TIGR02769 174 LDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLR-LVQSFCQRVAVMDKGQIVEECDVAQLL 239 (265)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHHhcEEEEEeCCEEEEECCHHHHc
Confidence 99999999999999999999999875 899999999975 467789999999999999999998764
No 119
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=4.4e-42 Score=337.41 Aligned_cols=193 Identities=32% Similarity=0.555 Sum_probs=166.2
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCC-CCCCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDV-LFPHL 81 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~-~~~~l 81 (583)
+.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. ..++.++|++|++. .++.+
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 91 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLG--PTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGP 91 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCC
Confidence 679999999999999999999999999999999999653 578999999987642 23567999999974 36678
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 161 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPts 161 (583)
|++||+.+..... ..+..+.+++++++++.+||.+..++ .+..||||||||++||++|+.+|++++|||||+
T Consensus 92 t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LSgG~~qrv~laral~~~p~llllDEPt~ 163 (211)
T cd03225 92 TVEEEVAFGLENL---GLPEEEIEERVEEALELVGLEGLRDR-----SPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTA 163 (211)
T ss_pred cHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCcHhhhcC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 9999998865322 12344455678899999999866554 357999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCe
Q 007952 162 GLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 210 (583)
Q Consensus 162 gLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~ 210 (583)
|||+.++..+.+.|++++++|+|||++||++. ++.+.||++++|++|+
T Consensus 164 ~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 164 GLDPAGRRELLELLKKLKAEGKTIIIVTHDLD-LLLELADRVIVLEDGK 211 (211)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCCC
Confidence 99999999999999999877999999999975 5777899999999885
No 120
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-41 Score=349.33 Aligned_cols=203 Identities=26% Similarity=0.439 Sum_probs=174.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc--------cccccEEEEccCC--C
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--------SLKSKIGFVTQDD--V 76 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~--------~~~~~i~yv~Q~~--~ 76 (583)
+++|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. ..++.++|++|++ .
T Consensus 20 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~ 97 (280)
T PRK13649 20 GRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHV--PTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQ 97 (280)
T ss_pred cceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccccccCHHHHHhheEEEeeChhhh
Confidence 469999999999999999999999999999999999653 578999999987642 2356799999996 4
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 77 LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 77 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
+++ .||+||+.+..... ..+.++..++++++++.+||.+ ..++ .+++||||||||++||++|+.+|++|+
T Consensus 98 ~~~-~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~LSgG~~qrv~la~al~~~p~lll 168 (280)
T PRK13649 98 LFE-ETVLKDVAFGPQNF---GVSQEEAEALAREKLALVGISESLFEK-----NPFELSGGQMRRVAIAGILAMEPKILV 168 (280)
T ss_pred hcc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhC-----CcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 555 69999998865332 1234455667889999999973 3443 457999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.||++++|++|++++.|+++++.
T Consensus 169 LDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (280)
T PRK13649 169 LDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMD-DVANYADFVYVLEKGKLVLSGKPKDIF 233 (280)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999877999999999975 577889999999999999999988763
No 121
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.6e-42 Score=345.37 Aligned_cols=207 Identities=24% Similarity=0.392 Sum_probs=174.0
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCC---CcccEEEECCccCCc------cccccEEEEccCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPYSK------SLKSKIGFVTQDD 75 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~---~~~G~I~~~g~~~~~------~~~~~i~yv~Q~~ 75 (583)
+++.+|+|+|+++++||+++|+||||||||||+|+|+|..... +.+|+|.++|+++.. ..++.++|++|++
T Consensus 18 ~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 97 (254)
T PRK14273 18 TDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTP 97 (254)
T ss_pred CCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeecc
Confidence 3467999999999999999999999999999999999976421 258999999987631 2466799999998
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCccCcccChHHHHHHHHHHHHHhCC
Q 007952 76 VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE----RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINP 151 (583)
Q Consensus 76 ~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p 151 (583)
.+++ +||+||+.+....+. .....+.++++++.++.+++. +..++ .+++||||||||++|||+|+.+|
T Consensus 98 ~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~-----~~~~LSgG~~qrv~laral~~~p 169 (254)
T PRK14273 98 NPFL-MSIYDNISYGPKIHG--TKDKKKLDEIVEQSLKKSALWNEVKDKLNT-----NALSLSGGQQQRLCIARTLAIEP 169 (254)
T ss_pred cccc-CcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhCCchhhHHHHhC-----CcccCCHHHHHHHHHHHHHHcCC
Confidence 8885 899999998654321 113344456788899998874 22333 46799999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 152 SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 152 ~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
++|+|||||+|||+.++..+++.|+++++ ++|||++||++. ++.+.||++++|++|+++..|+++++.
T Consensus 170 ~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 237 (254)
T PRK14273 170 NVILMDEPTSALDPISTGKIEELIINLKE-SYTIIIVTHNMQ-QAGRISDRTAFFLNGCIEEESSTDELF 237 (254)
T ss_pred CEEEEeCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999964 799999999975 467889999999999999999988764
No 122
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-41 Score=348.58 Aligned_cols=205 Identities=27% Similarity=0.459 Sum_probs=177.8
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCC-CCCCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDD-VLFPH 80 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~-~~~~~ 80 (583)
.+.+|+|+|++|++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. ..++.++|++|++ .+++.
T Consensus 19 ~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~--p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~ 96 (279)
T PRK13635 19 ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLL--PEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVG 96 (279)
T ss_pred CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhccc
Confidence 3569999999999999999999999999999999999763 578999999998753 2456799999997 36777
Q ss_pred CCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCC
Q 007952 81 LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPT 160 (583)
Q Consensus 81 lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPt 160 (583)
.||.||+.+..... ..+.++..++++++++.+||++..++. +..||||||||++||++|+.+|++|+|||||
T Consensus 97 ~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LS~G~~qrv~laral~~~p~lllLDEPt 168 (279)
T PRK13635 97 ATVQDDVAFGLENI---GVPREEMVERVDQALRQVGMEDFLNRE-----PHRLSGGQKQRVAIAGVLALQPDIIILDEAT 168 (279)
T ss_pred ccHHHHHhhhHhhC---CCCHHHHHHHHHHHHHHcCChhhhhCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 89999998865432 234555567789999999998776654 5799999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 161 SGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 161 sgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
+|||+.++..+++.|++++++ |+|||++||++.. +. .||++++|++|++++.|++++..+
T Consensus 169 ~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~-~~-~~d~i~~l~~G~i~~~g~~~~~~~ 229 (279)
T PRK13635 169 SMLDPRGRREVLETVRQLKEQKGITVLSITHDLDE-AA-QADRVIVMNKGEILEEGTPEEIFK 229 (279)
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHH-HH-cCCEEEEEECCEEEEECCHHHHhc
Confidence 999999999999999999876 8999999999754 54 599999999999999999887653
No 123
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.9e-42 Score=344.98 Aligned_cols=209 Identities=23% Similarity=0.374 Sum_probs=176.4
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----c-ccccEEEEccCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----S-LKSKIGFVTQDDVLFP 79 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~-~~~~i~yv~Q~~~~~~ 79 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++.. . .+..++|++|++.+++
T Consensus 16 ~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~--~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~ 93 (255)
T PRK11300 16 GGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFY--KPTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFR 93 (255)
T ss_pred CCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCc--CCCcceEEECCEECCCCCHHHHHhcCeEEeccCcccCC
Confidence 3567999999999999999999999999999999999965 3678999999987642 1 2345899999999999
Q ss_pred CCCHHHHHHHHHHcCCC----------CCC--CHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHH
Q 007952 80 HLTVKETLTYAALLRLP----------NTL--TKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEI 147 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~----------~~~--~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L 147 (583)
.+||+||+.++...... ... ...+..++++++++.+||.+..++ .+++||||||||++||++|
T Consensus 94 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----~~~~LS~G~~qrv~la~al 168 (255)
T PRK11300 94 EMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANR-----QAGNLAYGQQRRLEIARCM 168 (255)
T ss_pred CCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhC-----ChhhCCHHHHHHHHHHHHH
Confidence 99999999986431110 000 112334567889999999876665 4579999999999999999
Q ss_pred HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 148 IINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 148 ~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|++++.|++++..
T Consensus 169 ~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~~~ 242 (255)
T PRK11300 169 VTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMK-LVMGISDRIYVVNQGTPLANGTPEEIR 242 (255)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HHHHhCCEEEEEECCeEEecCCHHHHh
Confidence 9999999999999999999999999999999875 899999999965 577899999999999999999987753
No 124
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=6.8e-42 Score=339.84 Aligned_cols=198 Identities=30% Similarity=0.483 Sum_probs=166.1
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-------cccccEEEEccCC--CCC
Q 007952 8 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-------SLKSKIGFVTQDD--VLF 78 (583)
Q Consensus 8 ~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-------~~~~~i~yv~Q~~--~~~ 78 (583)
.+|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++.. ..++.++|++|++ .++
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~--~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 96 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLL--KPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLN 96 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcC
Confidence 7999999999999999999999999999999999965 3678999999987642 2356799999998 567
Q ss_pred CCCCHHHHHHHHHHcCCCCCCCHHHHHHH-HHHHHHHcCCC-ccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEE
Q 007952 79 PHLTVKETLTYAALLRLPNTLTKQQKEKR-AIDVINELGLE-RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFL 156 (583)
Q Consensus 79 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~-v~~~l~~lgL~-~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illL 156 (583)
+.+||+||+.+......+. ..++..++ ++++++.+++. +..++ .+.+||||||||++||++|+.+|++|+|
T Consensus 97 ~~~tv~~nl~~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~LS~G~~qrv~laral~~~p~lllL 169 (228)
T cd03257 97 PRMTIGEQIAEPLRIHGKL--SKKEARKEAVLLLLVGVGLPEEVLNR-----YPHELSGGQRQRVAIARALALNPKLLIA 169 (228)
T ss_pred CcCCHHHHHHHHHHhccCC--cHHHHHHHHHHHHHHHCCCChhHhhC-----CchhcCHHHHHHHHHHHHHhcCCCEEEe
Confidence 7899999998865432111 12222222 36889999995 44444 4578999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEc
Q 007952 157 DEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 215 (583)
Q Consensus 157 DEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 215 (583)
||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|+++..|
T Consensus 170 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 170 DEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLG-VVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEeCCEEEecC
Confidence 9999999999999999999999876 899999999975 566789999999999998764
No 125
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.8e-42 Score=349.12 Aligned_cols=205 Identities=30% Similarity=0.518 Sum_probs=177.2
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCC-CCCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDV-LFPH 80 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~-~~~~ 80 (583)
.+.+|+|+|+++++||+++|+||||||||||+|+|+|... +++|+|.++|+++.. ..++.++|++|++. .+..
T Consensus 16 ~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 93 (277)
T PRK13652 16 SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILK--PTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFS 93 (277)
T ss_pred CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECCcCCHHHHHhheEEEecCccccccc
Confidence 3569999999999999999999999999999999999653 679999999987642 34567999999973 3345
Q ss_pred CCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCC
Q 007952 81 LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPT 160 (583)
Q Consensus 81 lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPt 160 (583)
.||.||+.+..... ..+.++..++++++++.+||.+..++. ++.||||||||++||++|+.+|++|+|||||
T Consensus 94 ~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~Gq~qrl~laraL~~~p~llilDEPt 165 (277)
T PRK13652 94 PTVEQDIAFGPINL---GLDEETVAHRVSSALHMLGLEELRDRV-----PHHLSGGEKKRVAIAGVIAMEPQVLVLDEPT 165 (277)
T ss_pred ccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 79999998765321 234555566789999999998766654 5799999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 161 SGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 161 sgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|++++.|++++..
T Consensus 166 ~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~~~~~drv~~l~~G~i~~~g~~~~~~ 226 (277)
T PRK13652 166 AGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLD-LVPEMADYIYVMDKGRIVAYGTVEEIF 226 (277)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCeEEEECCHHHHh
Confidence 999999999999999999875 899999999975 577899999999999999999998874
No 126
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-41 Score=345.06 Aligned_cols=209 Identities=23% Similarity=0.419 Sum_probs=174.8
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC---CCcccEEEECCccCCc------cccccEEEEccCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME---PTVGGSITYNDHPYSK------SLKSKIGFVTQDD 75 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~---~~~~G~I~~~g~~~~~------~~~~~i~yv~Q~~ 75 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|.... ++++|+|.++|+++.. ..++.++|++|++
T Consensus 23 ~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 102 (258)
T PRK14268 23 GEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKP 102 (258)
T ss_pred CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCC
Confidence 356799999999999999999999999999999999997542 1368999999987632 2356799999999
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 76 VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 76 ~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
.+++ +|++||+.+..... ..+.++..++++++++.+|+.+...... +..+..||||||||++||++|+.+|++++
T Consensus 103 ~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgG~~qrv~laral~~~p~lll 177 (258)
T PRK14268 103 NPFP-MSIYDNVAYGPRIH---GANKKDLDGVVENALRSAALWDETSDRL-KSPALSLSGGQQQRLCIARTLAVKPKIIL 177 (258)
T ss_pred ccCc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcchhhhh-cCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 8888 89999999875432 1234445567888999999842211111 23467999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 220 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 220 (583)
|||||+|||+.++..+.+.|+++++ |+|||++||++. ++.+.||++++|++|++++.|+++++
T Consensus 178 lDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 240 (258)
T PRK14268 178 FDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQ-QAARISDYTGFFLMGELIEFGQTRQI 240 (258)
T ss_pred EeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999965 899999999965 46788999999999999999998876
No 127
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8e-42 Score=348.82 Aligned_cols=204 Identities=26% Similarity=0.445 Sum_probs=176.8
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-----cccccEEEEccCCC-CCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-----SLKSKIGFVTQDDV-LFP 79 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-----~~~~~i~yv~Q~~~-~~~ 79 (583)
++.+|+|+|++|++||+++|+||||||||||+++|+|... +.+|+|.++|.++.. ..++.++|++|++. .+.
T Consensus 14 ~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 91 (274)
T PRK13644 14 GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLR--PQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFV 91 (274)
T ss_pred CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEECCccccHHHHHhheEEEEEChhhhcc
Confidence 4569999999999999999999999999999999999653 578999999987642 24567999999975 366
Q ss_pred CCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCC
Q 007952 80 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEP 159 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEP 159 (583)
..|+.||+.+..... ..+.++..++++++++.+||++..++ .++.||||||||++||++|+.+|++|+||||
T Consensus 92 ~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~-----~~~~LS~G~~qrv~laral~~~p~lllLDEP 163 (274)
T PRK13644 92 GRTVEEDLAFGPENL---CLPPIEIRKRVDRALAEIGLEKYRHR-----SPKTLSGGQGQCVALAGILTMEPECLIFDEV 163 (274)
T ss_pred cchHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcC-----CcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 689999998865322 23455556778999999999876665 3579999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 160 TSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 160 tsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|+|||+.++..+.+.|++++++|+|||++||++. ++ ..||++++|++|++++.|++++..
T Consensus 164 t~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~~~ 223 (274)
T PRK13644 164 TSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLE-EL-HDADRIIVMDRGKIVLEGEPENVL 223 (274)
T ss_pred cccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH-hhCCEEEEEECCEEEEECCHHHHh
Confidence 9999999999999999999878999999999976 45 569999999999999999988763
No 128
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.9e-42 Score=346.97 Aligned_cols=209 Identities=27% Similarity=0.467 Sum_probs=177.1
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPH 80 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~ 80 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. ..++.++|++|+..+++.
T Consensus 13 ~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~ 90 (255)
T PRK11231 13 GTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLT--PQSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEG 90 (255)
T ss_pred CCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCCcEEEECCEEhHHCCHHHHhhheEEecccCCCCCC
Confidence 45689999999999999999999999999999999999653 578999999987632 235679999999988889
Q ss_pred CCHHHHHHHHHHcCCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCC
Q 007952 81 LTVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEP 159 (583)
Q Consensus 81 lTv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEP 159 (583)
+|+.||+.++...... .....++..++++++++.+||.+..++ .+..||||||||++||++|+.+|++|+||||
T Consensus 91 ~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~laral~~~p~llllDEP 165 (255)
T PRK11231 91 ITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADR-----RLTDLSGGQRQRAFLAMVLAQDTPVVLLDEP 165 (255)
T ss_pred ccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 9999999875211000 011123345568899999999876665 3579999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 160 TSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 160 tsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|+|||+.++..+.+.|++++++|+|||++||++. ++.+.||++++|++|+++..|++++..
T Consensus 166 ~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 226 (255)
T PRK11231 166 TTYLDINHQVELMRLMRELNTQGKTVVTVLHDLN-QASRYCDHLVVLANGHVMAQGTPEEVM 226 (255)
T ss_pred cccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHhcCEEEEEECCeEEEEcCHHHhc
Confidence 9999999999999999999877999999999975 578899999999999999999987753
No 129
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=5.4e-42 Score=346.47 Aligned_cols=196 Identities=26% Similarity=0.447 Sum_probs=171.1
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHH
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVK 84 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~ 84 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|... +++|+|.++|.++. ..++.++|++|++.+++.+||+
T Consensus 23 ~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~~-~~~~~i~~v~q~~~l~~~~tv~ 99 (257)
T PRK11247 23 GERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLET--PSAGELLAGTAPLA-EAREDTRLMFQDARLLPWKKVI 99 (257)
T ss_pred CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEHH-HhhCceEEEecCccCCCCCcHH
Confidence 45679999999999999999999999999999999999653 57899999998753 3467799999999999999999
Q ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCC
Q 007952 85 ETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLD 164 (583)
Q Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD 164 (583)
||+.+... . ..++++.++++.+||.+..+. .+.+||||||||++||++|+.+|++|+|||||+|||
T Consensus 100 enl~~~~~-------~--~~~~~~~~~l~~~gl~~~~~~-----~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD 165 (257)
T PRK11247 100 DNVGLGLK-------G--QWRDAALQALAAVGLADRANE-----WPAALSGGQKQRVALARALIHRPGLLLLDEPLGALD 165 (257)
T ss_pred HHHHhccc-------c--hHHHHHHHHHHHcCChhHhcC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Confidence 99987421 0 123567889999999876654 357999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChh
Q 007952 165 STTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 218 (583)
Q Consensus 165 ~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 218 (583)
+.++..+.+.|+++++ .|+|||++||++. .+.+.||++++|++|++++.|+.+
T Consensus 166 ~~~~~~l~~~L~~~~~~~~~tviivsHd~~-~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 166 ALTRIEMQDLIESLWQQHGFTVLLVTHDVS-EAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeecccc
Confidence 9999999999999865 4899999999975 467889999999999999988754
No 130
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=1.1e-41 Score=340.59 Aligned_cols=201 Identities=33% Similarity=0.485 Sum_probs=172.9
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc---cccccEEEEc-cCCCCCC
Q 007952 4 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---SLKSKIGFVT-QDDVLFP 79 (583)
Q Consensus 4 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~---~~~~~i~yv~-Q~~~~~~ 79 (583)
.+.+++|+|+|+++++||+++|+||||||||||+++|+|... +++|+|.++|++... ..++.++|++ |++.+++
T Consensus 31 ~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 108 (236)
T cd03267 31 YREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQ--PTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWW 108 (236)
T ss_pred cCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEccccchhhcccEEEEcCCccccCC
Confidence 456789999999999999999999999999999999999653 578999999986532 3456799998 5567888
Q ss_pred CCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCC
Q 007952 80 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEP 159 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEP 159 (583)
.+||+|++.+....+ ....++..++++++++.+|+.+..++. +..||||||||++||++|+.+|++++||||
T Consensus 109 ~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrl~la~al~~~p~llllDEP 180 (236)
T cd03267 109 DLPVIDSFYLLAAIY---DLPPARFKKRLDELSELLDLEELLDTP-----VRQLSLGQRMRAEIAAALLHEPEILFLDEP 180 (236)
T ss_pred CCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 999999998865432 223445556788899999998777764 568999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEc
Q 007952 160 TSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 215 (583)
Q Consensus 160 tsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 215 (583)
|+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|++++.|
T Consensus 181 t~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 181 TIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMK-DIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHH-HHHHhCCEEEEEeCCEEEecC
Confidence 9999999999999999999765 899999999975 577889999999999998765
No 131
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-41 Score=355.59 Aligned_cols=214 Identities=21% Similarity=0.318 Sum_probs=176.5
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC--CCcccEEEECCccCCc----c----ccccEEEEccC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME--PTVGGSITYNDHPYSK----S----LKSKIGFVTQD 74 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~--~~~~G~I~~~g~~~~~----~----~~~~i~yv~Q~ 74 (583)
+.+.+|+|+|++|++||+++|+|+||||||||+++|+|.... .+++|+|.++|+++.. . .++.++||+|+
T Consensus 18 ~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~ 97 (330)
T PRK15093 18 GWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQE 97 (330)
T ss_pred CCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecC
Confidence 345799999999999999999999999999999999997642 1468999999987642 1 13579999999
Q ss_pred CC--CCCCCCHHHHHHHHHHcCCCCC---CCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHh
Q 007952 75 DV--LFPHLTVKETLTYAALLRLPNT---LTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIII 149 (583)
Q Consensus 75 ~~--~~~~lTv~e~l~~~~~~~~~~~---~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~ 149 (583)
+. +.|.+||.+++........... ....+.++++.++++.+||.+..+ ..+.++.+|||||||||+||+||+.
T Consensus 98 ~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~--~~~~~p~~LSgG~~QRv~iArAL~~ 175 (330)
T PRK15093 98 PQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKD--AMRSFPYELTEGECQKVMIAIALAN 175 (330)
T ss_pred cchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHH--HHhCCchhCCHHHHHHHHHHHHHHC
Confidence 75 6888999999976432110000 112344567899999999975322 1134578999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 150 NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 150 ~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
+|++|++||||+|||+.++.++++.|++++++ |.|||++|||+. .+.++||++++|++|++++.|+++++.
T Consensus 176 ~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~-~v~~~~dri~vm~~G~ive~g~~~~i~ 247 (330)
T PRK15093 176 QPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQ-MLSQWADKINVLYCGQTVETAPSKELV 247 (330)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999999999875 999999999965 577899999999999999999988764
No 132
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-41 Score=342.83 Aligned_cols=211 Identities=23% Similarity=0.412 Sum_probs=174.7
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCC-CCC--cccEEEECCccCCc------cccccEEEEccCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLM-EPT--VGGSITYNDHPYSK------SLKSKIGFVTQDD 75 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~-~~~--~~G~I~~~g~~~~~------~~~~~i~yv~Q~~ 75 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|... .++ ++|+|.++|+++.. ..++.++|++|++
T Consensus 14 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~ 93 (250)
T PRK14245 14 GDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRP 93 (250)
T ss_pred CCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecCC
Confidence 34679999999999999999999999999999999999521 122 58999999988642 2356799999999
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 76 VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 76 ~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
.+++ .|++||+.+....+. ....+..+++++++++.+||.+...... +..+..||||||||++||++|+.+|++++
T Consensus 94 ~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~qrv~laral~~~p~lll 169 (250)
T PRK14245 94 NPFP-KSIFENVAYGLRVNG--VKDNAFIRQRVEETLKGAALWDEVKDKL-KESAFALSGGQQQRLCIARAMAVSPSVLL 169 (250)
T ss_pred ccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCcchhhhh-hCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 8887 599999988654321 1123334567889999999864321111 23567999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|||||+|||+.++..+.+.|++++ +++|||++||++. ++.+.||++++|++|++++.|+++++.
T Consensus 170 LDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~-~~~~~~d~v~~l~~G~~~~~~~~~~~~ 233 (250)
T PRK14245 170 MDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQ-QAARVSDKTAFFYMGEMVEYDDTKKIF 233 (250)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999995 4899999999975 477899999999999999999998874
No 133
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=1e-41 Score=359.98 Aligned_cols=198 Identities=30% Similarity=0.481 Sum_probs=174.3
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc--------cccccEEEEccCCCCCCCCCH
Q 007952 12 GITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--------SLKSKIGFVTQDDVLFPHLTV 83 (583)
Q Consensus 12 ~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~--------~~~~~i~yv~Q~~~~~~~lTv 83 (583)
|+|+++++||+++|+|||||||||||++|+|... +++|+|.++|+++.. ..++.++|++|++.+++.+||
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~--p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 92 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTR--PDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSV 92 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcH
Confidence 8999999999999999999999999999999653 578999999987632 235679999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCC
Q 007952 84 KETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGL 163 (583)
Q Consensus 84 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgL 163 (583)
+||+.++.... ...+.+++++++++.+||.+..++ .+.+||||||||++||+||+.+|++|+|||||+||
T Consensus 93 ~enl~~~~~~~-----~~~~~~~~~~~~l~~~gL~~~~~~-----~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~L 162 (354)
T TIGR02142 93 RGNLRYGMKRA-----RPSERRISFERVIELLGIGHLLGR-----LPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAAL 162 (354)
T ss_pred HHHHHHHhhcc-----ChhHHHHHHHHHHHHcCChhHhcC-----ChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCC
Confidence 99999875321 223445678999999999877665 45799999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 164 DSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 164 D~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
|+.++..+.+.|++++++ |+|||++||++. ++.++||++++|++|+++..|+++++..
T Consensus 163 D~~~~~~l~~~L~~l~~~~g~tiiivtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (354)
T TIGR02142 163 DDPRKYEILPYLERLHAEFGIPILYVSHSLQ-EVLRLADRVVVLEDGRVAAAGPIAEVWA 221 (354)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeCCEEEEECCHHHHhc
Confidence 999999999999999876 899999999975 5778999999999999999999988643
No 134
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-41 Score=343.45 Aligned_cols=210 Identities=24% Similarity=0.400 Sum_probs=174.4
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCC-CC--CcccEEEECCccCCc------cccccEEEEccCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLM-EP--TVGGSITYNDHPYSK------SLKSKIGFVTQDD 75 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~-~~--~~~G~I~~~g~~~~~------~~~~~i~yv~Q~~ 75 (583)
+++.+|+|+|+++++||+++|+||||||||||+|+|+|... .+ +++|+|.++|+++.. ..++.++|++|++
T Consensus 17 ~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 96 (253)
T PRK14242 17 GDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKP 96 (253)
T ss_pred CCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCC
Confidence 34679999999999999999999999999999999999642 12 468999999987642 2356799999999
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 76 VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 76 ~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
.+++ .||+||+.+....+. ....++.+++++++++.+|+.+...... +..+++||||||||++||++|+.+|++|+
T Consensus 97 ~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgGq~qrv~laral~~~p~lll 172 (253)
T PRK14242 97 NPFP-KSIFENVAYGLRVNG--VKDKAYLAERVERSLRHAALWDEVKDRL-HESALGLSGGQQQRLCIARALAVEPEVLL 172 (253)
T ss_pred CCCc-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCchhhhHHh-hCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 8888 599999998754321 1123344567888999999864221111 23567999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 220 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 220 (583)
|||||+|||+.++..+.+.|+++++ |+|||++||++. ++.+.||++++|++|+++..|+++++
T Consensus 173 lDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14242 173 MDEPASALDPIATQKIEELIHELKA-RYTIIIVTHNMQ-QAARVSDVTAFFYMGKLIEVGPTEQI 235 (253)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHhc-CCeEEEEEecHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999964 799999999975 47789999999999999999998775
No 135
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=3.5e-39 Score=390.98 Aligned_cols=208 Identities=22% Similarity=0.411 Sum_probs=185.9
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc---cccccEEEEccCCCCCCCCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---SLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~---~~~~~i~yv~Q~~~~~~~lT 82 (583)
++.+|+|+|+++++||+++|+||||||||||+|+|+|... +++|+|.++|+++.. ..++.+||++|++.+++.+|
T Consensus 942 ~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~--PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LT 1019 (2272)
T TIGR01257 942 GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLP--PTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLT 1019 (2272)
T ss_pred CceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCC--CCceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCC
Confidence 4679999999999999999999999999999999999763 679999999998753 34678999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCC
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 162 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsg 162 (583)
|+|++.+.++++. .+.++.+++++++++.+||++..++. +++|||||||||+||+||+.+|++++|||||+|
T Consensus 1020 V~E~L~f~~~lkg---~~~~~~~~~v~~lL~~vgL~~~~~~~-----~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSG 1091 (2272)
T TIGR01257 1020 VAEHILFYAQLKG---RSWEEAQLEMEAMLEDTGLHHKRNEE-----AQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSG 1091 (2272)
T ss_pred HHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcC
Confidence 9999999876542 33455567799999999998877654 579999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHHHHH
Q 007952 163 LDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFS 225 (583)
Q Consensus 163 LD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~ 225 (583)
||+.++..+.+.|++++ +|+|||++||++. ++..+|||+++|++|+++..|+++++.+.|.
T Consensus 1092 LDp~sr~~l~~lL~~l~-~g~TIIltTHdmd-ea~~laDrI~iL~~GkL~~~Gs~~~Lk~~~g 1152 (2272)
T TIGR01257 1092 VDPYSRRSIWDLLLKYR-SGRTIIMSTHHMD-EADLLGDRIAIISQGRLYCSGTPLFLKNCFG 1152 (2272)
T ss_pred CCHHHHHHHHHHHHHHh-CCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEecCHHHHHHhcC
Confidence 99999999999999995 5999999999965 5778999999999999999999999987764
No 136
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=9.1e-42 Score=345.18 Aligned_cols=208 Identities=27% Similarity=0.436 Sum_probs=176.2
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPH 80 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~ 80 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. ..++.++|++|++.+++.
T Consensus 12 ~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~ 89 (256)
T TIGR03873 12 GGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALR--PDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVP 89 (256)
T ss_pred CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCEEcccCCHHHHhhheEEecccCccCCC
Confidence 45679999999999999999999999999999999999653 578999999987643 235579999999888888
Q ss_pred CCHHHHHHHHHHcCCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCC
Q 007952 81 LTVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEP 159 (583)
Q Consensus 81 lTv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEP 159 (583)
+||+||+.+....... .....++..+++.++++.+++.+..++ .+..||||||||++||++|+.+|++++||||
T Consensus 90 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrl~la~al~~~p~llllDEP 164 (256)
T TIGR03873 90 LTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADR-----DMSTLSGGERQRVHVARALAQEPKLLLLDEP 164 (256)
T ss_pred CCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEcCc
Confidence 9999999875211000 001122344578899999999876665 3578999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhH
Q 007952 160 TSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 220 (583)
Q Consensus 160 tsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 220 (583)
|+|||+.++..+.+.|++++++|.|||++||++. .+.+.||++++|++|+++..|++++.
T Consensus 165 t~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 224 (256)
T TIGR03873 165 TNHLDVRAQLETLALVRELAATGVTVVAALHDLN-LAASYCDHVVVLDGGRVVAAGPPREV 224 (256)
T ss_pred cccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCEEEecCHHHh
Confidence 9999999999999999999877999999999976 57789999999999999999998775
No 137
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-41 Score=345.87 Aligned_cols=205 Identities=30% Similarity=0.523 Sum_probs=176.5
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc------cccccEEEEccCCC-CC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK------SLKSKIGFVTQDDV-LF 78 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~------~~~~~i~yv~Q~~~-~~ 78 (583)
.+.+++|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. ..++.++|++|++. .+
T Consensus 14 ~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 91 (275)
T PRK13639 14 GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILK--PTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQL 91 (275)
T ss_pred CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEECccccchHHHHHhheEEEeeChhhhh
Confidence 4579999999999999999999999999999999999653 578999999988631 23567999999963 33
Q ss_pred CCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeC
Q 007952 79 PHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 158 (583)
Q Consensus 79 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDE 158 (583)
...||.||+.+..... ..+.++..+++.++++.+||.+..++. +++||||||||++||++|+.+|++++|||
T Consensus 92 ~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LS~Gq~qrv~laral~~~p~llllDE 163 (275)
T PRK13639 92 FAPTVEEDVAFGPLNL---GLSKEEVEKRVKEALKAVGMEGFENKP-----PHHLSGGQKKRVAIAGILAMKPEIIVLDE 163 (275)
T ss_pred ccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchhhcCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 3479999998764321 234555567788999999998776654 57999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 159 PTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 159 PtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
||+|||+.++..+.+.|++++++|+|||++||++. ++.+.||++++|++|++++.|++++..
T Consensus 164 Pt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 225 (275)
T PRK13639 164 PTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVD-LVPVYADKVYVMSDGKIIKEGTPKEVF 225 (275)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999877999999999965 577889999999999999999998864
No 138
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-41 Score=347.30 Aligned_cols=204 Identities=28% Similarity=0.486 Sum_probs=176.4
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCC-CCCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDV-LFPH 80 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~-~~~~ 80 (583)
++.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. ..++.++|++|++. .++.
T Consensus 21 ~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~ 98 (271)
T PRK13632 21 ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLK--PQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIG 98 (271)
T ss_pred CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCc
Confidence 4679999999999999999999999999999999999653 578999999988742 34677999999974 6777
Q ss_pred CCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCC
Q 007952 81 LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPT 160 (583)
Q Consensus 81 lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPt 160 (583)
+||+||+.+..... ..+.++..++++++++.+||.+..++. ++.||||||||++||++|+.+|++|+|||||
T Consensus 99 ~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~laral~~~p~lllLDEP~ 170 (271)
T PRK13632 99 ATVEDDIAFGLENK---KVPPKKMKDIIDDLAKKVGMEDYLDKE-----PQNLSGGQKQRVAIASVLALNPEIIIFDEST 170 (271)
T ss_pred ccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 89999998865322 233445566789999999998766654 5799999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 161 SGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 161 sgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
+|||+.++..+++.|++++++ ++|||++||++.. + ..||++++|++|+++..|++++..
T Consensus 171 ~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~-~~~d~v~~l~~G~i~~~g~~~~~~ 230 (271)
T PRK13632 171 SMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDE-A-ILADKVIVFSEGKLIAQGKPKEIL 230 (271)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhH-H-hhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999876 5999999999864 4 479999999999999999987754
No 139
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-41 Score=341.50 Aligned_cols=212 Identities=25% Similarity=0.430 Sum_probs=175.3
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC-CCcccEEEECCccCCc----cccccEEEEccCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-PTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFP 79 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~-~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~ 79 (583)
+++.+|+|+|+++++||+++|+||||||||||+|+|+|...+ ++.+|+|.++|+++.. ..++.++|++|++.+++
T Consensus 13 ~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~ 92 (246)
T PRK14269 13 GKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFV 92 (246)
T ss_pred CCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCcccc
Confidence 346799999999999999999999999999999999996532 3578999999988743 34667999999998887
Q ss_pred CCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCC
Q 007952 80 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEP 159 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEP 159 (583)
.||+||+.+....+.. ........++++++++.++|.+...... +..++.||||||||++|||+|+.+|++++||||
T Consensus 93 -~tv~eni~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~qrv~laral~~~p~lllLDEP 169 (246)
T PRK14269 93 -KSIYENISYAPKLHGM-IKNKDEEEALVVDCLQKVGLFEEVKDKL-KQNALALSGGQQQRLCIARALAIKPKLLLLDEP 169 (246)
T ss_pred -ccHHHHhhhHHhhcCc-ccChHHHHHHHHHHHHHcCCChhhhHHh-cCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 6999999886533210 0022344556888999999953211111 234678999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 160 TSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 160 tsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|+|||+.++..+.+.|+++++ |+|||++||++. ++.+.+|++++|++|++++.|++++..
T Consensus 170 ~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 229 (246)
T PRK14269 170 TSALDPISSGVIEELLKELSH-NLSMIMVTHNMQ-QGKRVADYTAFFHLGELIEFGESKEFF 229 (246)
T ss_pred cccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH-HHHhhCcEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999865 899999999965 477899999999999999999988763
No 140
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-41 Score=345.46 Aligned_cols=212 Identities=24% Similarity=0.411 Sum_probs=175.5
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC---CCcccEEEECCccCCc------cccccEEEEccCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME---PTVGGSITYNDHPYSK------SLKSKIGFVTQDD 75 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~---~~~~G~I~~~g~~~~~------~~~~~i~yv~Q~~ 75 (583)
+++.+|+|+|++|++||+++|+||||||||||+++|+|.... ++.+|+|.++|+++.. ..++.++|++|++
T Consensus 30 ~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 109 (267)
T PRK14235 30 GEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKP 109 (267)
T ss_pred CCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCC
Confidence 346799999999999999999999999999999999997642 1478999999987642 2356799999999
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 76 VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 76 ~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
.+++. ||.||+.+....+.. ..+.++..++++++++.+|+.+...... +..+++||||||||++||++|+.+|++|+
T Consensus 110 ~~~~~-tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgGq~qrv~laral~~~p~lll 186 (267)
T PRK14235 110 NPFPK-SIYENVAYGPRIHGL-ARSKAELDEIVETSLRKAGLWEEVKDRL-HEPGTGLSGGQQQRLCIARAIAVSPEVIL 186 (267)
T ss_pred CCCCC-cHHHHHHHHHHhccc-ccchHHHHHHHHHHHHHcCCchhhhHHh-hCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 88885 999999987543211 1123344567889999999964211111 23467999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|||||+|||+.++..+.+.|+++++ ++|||++||++. .+.+.||++++|++|+++..|+++++.
T Consensus 187 LDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~ 250 (267)
T PRK14235 187 MDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQ-QAARVSQRTAFFHLGNLVEVGDTEKMF 250 (267)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHH-HHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999975 789999999975 577889999999999999999988763
No 141
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.6e-42 Score=347.09 Aligned_cols=209 Identities=23% Similarity=0.412 Sum_probs=176.9
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPH 80 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~ 80 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. ..++.++|++|++.+++.
T Consensus 18 ~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~ 95 (265)
T PRK10253 18 GKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMT--PAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGD 95 (265)
T ss_pred CCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCC
Confidence 35679999999999999999999999999999999999653 578999999987642 235679999999999999
Q ss_pred CCHHHHHHHHHHcCCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCC
Q 007952 81 LTVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEP 159 (583)
Q Consensus 81 lTv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEP 159 (583)
+|++||+.+......+ .....+...++++++++.+||.+..++ .++.||||||||++||+||+.+|++++||||
T Consensus 96 ~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~Gq~qrv~laral~~~p~llllDEP 170 (265)
T PRK10253 96 ITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQ-----SVDTLSGGQRQRAWIAMVLAQETAIMLLDEP 170 (265)
T ss_pred CcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcC-----CcccCChHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 9999999875211100 000112344568899999999876555 4679999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 160 TSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 160 tsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|+|||+.++..+.+.|++++++ |+|||++||++. ++.++||++++|++|++++.|+++++.
T Consensus 171 t~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (265)
T PRK10253 171 TTWLDISHQIDLLELLSELNREKGYTLAAVLHDLN-QACRYASHLIALREGKIVAQGAPKEIV 232 (265)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999874 899999999975 578999999999999999999988764
No 142
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-41 Score=346.83 Aligned_cols=205 Identities=22% Similarity=0.408 Sum_probs=176.2
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-----cccccEEEEccCCC-CCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-----SLKSKIGFVTQDDV-LFP 79 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-----~~~~~i~yv~Q~~~-~~~ 79 (583)
.+.+|+|+|++|++||+++|+||||||||||+++|+|... +.+|+|.++|.++.. ..++.+||++|++. .+.
T Consensus 22 ~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~ 99 (280)
T PRK13633 22 EKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLI--PSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIV 99 (280)
T ss_pred CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEeccccccHHHHhhheEEEecChhhhhc
Confidence 4679999999999999999999999999999999999753 678999999987742 24678999999974 233
Q ss_pred CCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCC
Q 007952 80 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEP 159 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEP 159 (583)
..||.|++.|..... ..+..+.+++++++++.+||++..++. +.+||||||||++||++|+.+|++++||||
T Consensus 100 ~~~v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEP 171 (280)
T PRK13633 100 ATIVEEDVAFGPENL---GIPPEEIRERVDESLKKVGMYEYRRHA-----PHLLSGGQKQRVAIAGILAMRPECIIFDEP 171 (280)
T ss_pred cccHHHHHHhhHhhc---CCCHHHHHHHHHHHHHHCCCHhHhhCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 469999998875422 234555667789999999998776654 579999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 160 TSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 160 tsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
|+|||+.++..+.+.|++++++ |+|||++||++.. +.. ||++++|++|+++..|+++++..
T Consensus 172 t~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~-~~~-~d~v~~l~~G~i~~~g~~~~~~~ 233 (280)
T PRK13633 172 TAMLDPSGRREVVNTIKELNKKYGITIILITHYMEE-AVE-ADRIIVMDSGKVVMEGTPKEIFK 233 (280)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHH-Hhc-CCEEEEEECCEEEEecCHHHHhc
Confidence 9999999999999999999764 9999999999764 544 99999999999999999988753
No 143
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-41 Score=358.74 Aligned_cols=193 Identities=29% Similarity=0.507 Sum_probs=171.9
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc--------cccccEEEEccCCCCCCCCCH
Q 007952 12 GITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--------SLKSKIGFVTQDDVLFPHLTV 83 (583)
Q Consensus 12 ~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~--------~~~~~i~yv~Q~~~~~~~lTv 83 (583)
|+|+++++||+++|+|||||||||||++|+|... +++|+|.++|+++.. ..++.++|++|+..++|.+||
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~--p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 93 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTR--PQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKV 93 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcH
Confidence 8999999999999999999999999999999653 578999999987632 235789999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCC
Q 007952 84 KETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGL 163 (583)
Q Consensus 84 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgL 163 (583)
+||+.++.. ....++++++++.+||++..++ .+++||||||||++|||+|+.+|++|+|||||+||
T Consensus 94 ~enl~~~~~---------~~~~~~~~~~l~~~gl~~~~~~-----~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~L 159 (352)
T PRK11144 94 RGNLRYGMA---------KSMVAQFDKIVALLGIEPLLDR-----YPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASL 159 (352)
T ss_pred HHHHHhhhh---------hhhHHHHHHHHHHcCCchhhhC-----CcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccC
Confidence 999988632 1234568899999999877665 46799999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 164 DSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 164 D~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|+.++..+.+.|++++++ |+|+|++||++. ++.++||++++|++|+++..|+++++.
T Consensus 160 D~~~~~~l~~~L~~l~~~~g~tii~vTHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~i~ 217 (352)
T PRK11144 160 DLPRKRELLPYLERLAREINIPILYVSHSLD-EILRLADRVVVLEQGKVKAFGPLEEVW 217 (352)
T ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHHhCCEEEEEeCCEEEEecCHHHHH
Confidence 999999999999999876 899999999975 578899999999999999999998874
No 144
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-41 Score=344.05 Aligned_cols=203 Identities=24% Similarity=0.422 Sum_probs=175.3
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCC-CCCCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDV-LFPHL 81 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~-~~~~l 81 (583)
+.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. ..++.++|++|++. +++..
T Consensus 22 ~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 99 (269)
T PRK13648 22 SFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK--VKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGS 99 (269)
T ss_pred CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccc
Confidence 469999999999999999999999999999999999753 578999999987642 34567999999974 67778
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 161 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPts 161 (583)
|+++|+.+..... ..+.++..++++++++.+|+.+..++ .+++||||||||++||++|+.+|++++|||||+
T Consensus 100 ~v~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrl~laral~~~p~lllLDEPt~ 171 (269)
T PRK13648 100 IVKYDVAFGLENH---AVPYDEMHRRVSEALKQVDMLERADY-----EPNALSGGQKQRVAIAGVLALNPSVIILDEATS 171 (269)
T ss_pred cHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCchhhhC-----CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 9999998864322 23344556678899999999876665 357999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 162 GLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 162 gLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|||+.++..+.+.|++++++ |+|||++||++.. +.. ||++++|++|++++.|++++..
T Consensus 172 ~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~-~~~-~d~i~~l~~G~i~~~g~~~~~~ 230 (269)
T PRK13648 172 MLDPDARQNLLDLVRKVKSEHNITIISITHDLSE-AME-ADHVIVMNKGTVYKEGTPTEIF 230 (269)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchH-Hhc-CCEEEEEECCEEEEecCHHHHh
Confidence 99999999999999999865 8999999999764 554 9999999999999999988763
No 145
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=1.3e-41 Score=345.30 Aligned_cols=210 Identities=28% Similarity=0.498 Sum_probs=176.0
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCC-CcccEEEECCccCCc---------cccccEEEEccC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYSK---------SLKSKIGFVTQD 74 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~-~~~G~I~~~g~~~~~---------~~~~~i~yv~Q~ 74 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|...+. +.+|+|.++|.++.. ..++.++|++|+
T Consensus 15 ~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~ 94 (262)
T PRK09984 15 NQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQ 94 (262)
T ss_pred CCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEccc
Confidence 4578999999999999999999999999999999999975421 236999999987632 224679999999
Q ss_pred CCCCCCCCHHHHHHHHHHcCCCC-----CCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHh
Q 007952 75 DVLFPHLTVKETLTYAALLRLPN-----TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIII 149 (583)
Q Consensus 75 ~~~~~~lTv~e~l~~~~~~~~~~-----~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~ 149 (583)
+.+++.+||+||+.+......+. ....++.+++++++++.+|+.+..++ .+.+||||||||++||++|+.
T Consensus 95 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~laral~~ 169 (262)
T PRK09984 95 FNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQ-----RVSTLSGGQQQRVAIARALMQ 169 (262)
T ss_pred cccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhC-----CccccCHHHHHHHHHHHHHhc
Confidence 99999999999998754211000 01123445678999999999876665 356899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhH
Q 007952 150 NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 220 (583)
Q Consensus 150 ~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 220 (583)
+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. .+.+.||++++|++|++++.|++++.
T Consensus 170 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~-~~~~~~d~i~~l~~g~i~~~g~~~~~ 240 (262)
T PRK09984 170 QAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVD-YALRYCERIVALRQGHVFYDGSSQQF 240 (262)
T ss_pred CCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHh
Confidence 99999999999999999999999999999864 899999999975 47789999999999999999998763
No 146
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-41 Score=346.51 Aligned_cols=208 Identities=25% Similarity=0.412 Sum_probs=175.8
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPH 80 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~ 80 (583)
+++.+|+|+||++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++.. ..++.++|++|+..+++.
T Consensus 22 ~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~--~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~ 99 (265)
T PRK10575 22 PGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQ--PPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEG 99 (265)
T ss_pred CCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCC--CCCCCEEEECCEehhhCCHHHHhhheEEeccCCCCCCC
Confidence 3467999999999999999999999999999999999965 3678999999987632 345679999999888899
Q ss_pred CCHHHHHHHHHHcCCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCC
Q 007952 81 LTVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEP 159 (583)
Q Consensus 81 lTv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEP 159 (583)
+||.||+.+....... .........++++++++.+++++..++. +++||||||||++||++|+.+|++|+||||
T Consensus 100 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~laral~~~p~lllLDEP 174 (265)
T PRK10575 100 MTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRL-----VDSLSGGERQRAWIAMLVAQDSRCLLLDEP 174 (265)
T ss_pred ccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 9999999875321100 0011223456688999999998766654 568999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhH
Q 007952 160 TSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 220 (583)
Q Consensus 160 tsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 220 (583)
|+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|+++..|++++.
T Consensus 175 t~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~-~i~~~~d~i~~l~~G~i~~~~~~~~~ 235 (265)
T PRK10575 175 TSALDIAHQVDVLALVHRLSQERGLTVIAVLHDIN-MAARYCDYLVALRGGEMIAQGTPAEL 235 (265)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEecCHHHh
Confidence 9999999999999999999865 899999999975 57789999999999999999998765
No 147
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=2e-41 Score=338.81 Aligned_cols=206 Identities=29% Similarity=0.504 Sum_probs=179.3
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc--cccccEEEEccCCCCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~--~~~~~i~yv~Q~~~~~~~lT 82 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|.++.. ..++.++|++|++.+++.+|
T Consensus 11 ~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t 88 (237)
T TIGR00968 11 GSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQ--PDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLT 88 (237)
T ss_pred CCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcCcCChhhcCEEEEecChhhccCCc
Confidence 35679999999999999999999999999999999999653 578999999988753 23567999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCC
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 162 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsg 162 (583)
+.||+.+....+ ..+.....++++++++.+++.+..++. ++.|||||+||++||++|+.+|++++|||||+|
T Consensus 89 ~~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~lS~G~~qrl~laral~~~p~llllDEP~~~ 160 (237)
T TIGR00968 89 VRDNIAFGLEIR---KHPKAKIKARVEELLELVQLEGLGDRY-----PNQLSGGQRQRVALARALAVEPQVLLLDEPFGA 160 (237)
T ss_pred HHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 999998865432 123344456788999999997766653 568999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 163 LDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 163 LD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|++++.|+.++..
T Consensus 161 LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~~~ 219 (237)
T TIGR00968 161 LDAKVRKELRSWLRKLHDEVHVTTVFVTHDQE-EAMEVADRIVVMSNGKIEQIGSPDEVY 219 (237)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCEEEEEECCEEEEecCHHHHH
Confidence 9999999999999999876 899999999975 577889999999999999999988764
No 148
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1.4e-41 Score=338.27 Aligned_cols=202 Identities=26% Similarity=0.410 Sum_probs=171.6
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-----cccccEEEEccCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-----SLKSKIGFVTQDDVLFP 79 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-----~~~~~i~yv~Q~~~~~~ 79 (583)
+++++|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|.++.. ..++.++|++|++.+++
T Consensus 11 ~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~ 88 (230)
T TIGR03410 11 GQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP--VKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFP 88 (230)
T ss_pred CCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccC
Confidence 35679999999999999999999999999999999999653 678999999987642 12467999999999999
Q ss_pred CCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcC-CCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeC
Q 007952 80 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG-LERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 158 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDE 158 (583)
.+|++||+.+....+. .. ..+.++++++.++ +.+..++ .+++||||||||++||++|+.+|++++|||
T Consensus 89 ~~tv~~~l~~~~~~~~---~~---~~~~~~~~l~~~~~l~~~~~~-----~~~~LS~G~~qrv~la~al~~~p~illlDE 157 (230)
T TIGR03410 89 RLTVEENLLTGLAALP---RR---SRKIPDEIYELFPVLKEMLGR-----RGGDLSGGQQQQLAIARALVTRPKLLLLDE 157 (230)
T ss_pred CCcHHHHHHHHHHhcC---cc---hHHHHHHHHHHHHhHHHHhhC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEecC
Confidence 9999999988654321 11 1233566777776 4544444 467999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhH
Q 007952 159 PTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 220 (583)
Q Consensus 159 PtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 220 (583)
||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|+++..|+++++
T Consensus 158 Pt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 158 PTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLD-FARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHc
Confidence 99999999999999999999875 899999999975 57778999999999999999998775
No 149
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.9e-42 Score=322.53 Aligned_cols=208 Identities=29% Similarity=0.492 Sum_probs=179.5
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCC
Q 007952 4 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFP 79 (583)
Q Consensus 4 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~ 79 (583)
-..|++|+++|++++|||+++|+||||||||||||.|+|.+. +.+|++.+||.+++. ++.+.-+.+||+..+-.
T Consensus 11 ~~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~--p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laF 88 (259)
T COG4559 11 LAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELS--PDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAF 88 (259)
T ss_pred eecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccC--CCCCeEeeCCcChhhCCHHHHHHHhhhcccCccccc
Confidence 356899999999999999999999999999999999999764 578999999998753 34567789999987744
Q ss_pred CCCHHHHHHHHHHcCCCCCCC--HHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHh------CC
Q 007952 80 HLTVKETLTYAALLRLPNTLT--KQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIII------NP 151 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~~~~~--~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~------~p 151 (583)
..||+|-+.++. .|.... ..+..+.+++.+...++.+.+.. ....|||||||||.+||.|++ ++
T Consensus 89 pFtv~eVV~mGr---~p~~~g~~~~e~~~i~~~ala~~d~~~la~R-----~y~~LSGGEqQRVqlARvLaQl~~~v~~~ 160 (259)
T COG4559 89 PFTVQEVVQMGR---IPHRSGREPEEDERIAAQALAATDLSGLAGR-----DYRTLSGGEQQRVQLARVLAQLWPPVPSG 160 (259)
T ss_pred ceEHHHHHHhcc---cccccCCCchhhHHHHHHHHHHcChhhhhcc-----chhhcCchHHHHHHHHHHHHHccCCCCCC
Confidence 469999999874 444322 23556668899999999887764 357999999999999999985 45
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 152 SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 152 ~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
++||||||||.||...+..++++.++++++|..|+++.||.+. ...+||+|++|++||++..|+|++++.
T Consensus 161 r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNL-AA~YaDrivll~~Grv~a~g~p~~vlt 230 (259)
T COG4559 161 RWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNL-AAQYADRIVLLHQGRVIASGSPQDVLT 230 (259)
T ss_pred ceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchH-HHHhhheeeeeeCCeEeecCCHHHhcC
Confidence 6999999999999999999999999999999999999999876 568999999999999999999998763
No 150
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.5e-41 Score=345.55 Aligned_cols=204 Identities=28% Similarity=0.453 Sum_probs=176.8
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcc---cEEEECCccCCc----cccccEEEEccCCC-CC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVG---GSITYNDHPYSK----SLKSKIGFVTQDDV-LF 78 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~---G~I~~~g~~~~~----~~~~~i~yv~Q~~~-~~ 78 (583)
+.+|+|+|+++++||+++|+||||||||||+++|+|... +.+ |+|.++|+++.. ..++.+||++|++. .+
T Consensus 20 ~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~--p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~ 97 (282)
T PRK13640 20 KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLL--PDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQF 97 (282)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccC--CCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhh
Confidence 569999999999999999999999999999999999763 344 999999998753 24567999999974 67
Q ss_pred CCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeC
Q 007952 79 PHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 158 (583)
Q Consensus 79 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDE 158 (583)
+..||+||+.+..... ..+.++.+++++++++.+||++..++ .++.||||||||++||++|+.+|++|+|||
T Consensus 98 ~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~-----~~~~LS~G~~qrv~laral~~~P~llllDE 169 (282)
T PRK13640 98 VGATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGMLDYIDS-----EPANLSGGQKQRVAIAGILAVEPKIIILDE 169 (282)
T ss_pred ccCCHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCChhHhcC-----CcccCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 7789999998764322 23556666789999999999876665 467999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 159 PTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 159 PtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
||+|||+.++..+.+.|++++++ |+|||++||++.. + ..||++++|++|++++.|++++...
T Consensus 170 Pt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~-~-~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (282)
T PRK13640 170 STSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDE-A-NMADQVLVLDDGKLLAQGSPVEIFS 232 (282)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999865 8999999999764 5 5799999999999999999987643
No 151
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-41 Score=342.43 Aligned_cols=211 Identities=26% Similarity=0.424 Sum_probs=175.3
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC-C--CcccEEEECCccCCc------cccccEEEEccCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYSK------SLKSKIGFVTQDD 75 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~-~--~~~G~I~~~g~~~~~------~~~~~i~yv~Q~~ 75 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|.... + +++|+|.++|+++.. ..++.++|++|++
T Consensus 24 ~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~ 103 (260)
T PRK10744 24 GKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKP 103 (260)
T ss_pred CCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCC
Confidence 345799999999999999999999999999999999997531 2 468999999987631 2457799999999
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 76 VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 76 ~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
.+++ .||+||+.+...... ..+.++..++++++++.+++.+...... +..+.+||||||||++||++|+.+|++|+
T Consensus 104 ~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~Gq~qrv~laral~~~p~lll 179 (260)
T PRK10744 104 TPFP-MSIYDNIAFGVRLFE--KLSRAEMDERVEWALTKAALWNEVKDKL-HQSGYSLSGGQQQRLCIARGIAIRPEVLL 179 (260)
T ss_pred ccCc-CcHHHHHhhhHhhcC--CCCHHHHHHHHHHHHHHcCCChhhHHHH-hcCCCCCCHHHHHHHHHHHHHHCCCCEEE
Confidence 8887 799999988653221 2344555567889999999853111111 23467999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+.+|++++|++|+++..|+++++.
T Consensus 180 LDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 243 (260)
T PRK10744 180 LDEPCSALDPISTGRIEELITELKQ-DYTVVIVTHNMQ-QAARCSDYTAFMYLGELIEFGNTDTIF 243 (260)
T ss_pred EcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999964 789999999975 477889999999999999999988764
No 152
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-41 Score=341.89 Aligned_cols=211 Identities=26% Similarity=0.450 Sum_probs=175.1
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC-C--CcccEEEECCccCCc------cccccEEEEccCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYSK------SLKSKIGFVTQDD 75 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~-~--~~~G~I~~~g~~~~~------~~~~~i~yv~Q~~ 75 (583)
+++.+|+|+|++|++||+++|+||||||||||+++|+|.... + +++|+|.++|+++.. ..++.++|++|++
T Consensus 23 ~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~ 102 (259)
T PRK14274 23 GQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKG 102 (259)
T ss_pred CCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCC
Confidence 346799999999999999999999999999999999997532 2 258999999987641 2356799999999
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 76 VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 76 ~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
.+++. ||+||+.+....+ ....+++..++++++++.+++.+...... +..+.+||||||||++||++|+.+|++++
T Consensus 103 ~~~~~-tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~l-~~~~~~LS~Gq~qrv~laral~~~p~lll 178 (259)
T PRK14274 103 NPFPQ-SIFDNVAYGPRIH--GTKNKKKLQEIVEKSLKDVALWDEVKDRL-HTQALSLSGGQQQRLCIARALATNPDVLL 178 (259)
T ss_pred ccccc-CHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCchhhhhhh-hCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 88885 9999998864332 11133445567888999999854211111 23567999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+.||++++|++|+++..|++++..
T Consensus 179 lDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 242 (259)
T PRK14274 179 MDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQ-QAARVSDQTAFFYMGELVECNDTNKMF 242 (259)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 9999999999999999999999975 789999999975 577899999999999999999998864
No 153
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-41 Score=340.70 Aligned_cols=212 Identities=25% Similarity=0.417 Sum_probs=174.7
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC-C--CcccEEEECCccCCc------cccccEEEEccCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYSK------SLKSKIGFVTQDD 75 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~-~--~~~G~I~~~g~~~~~------~~~~~i~yv~Q~~ 75 (583)
+++.+|+|+||++++||+++|+||||||||||+++|+|.... + +.+|+|.++|+++.. ..++.++|++|++
T Consensus 16 ~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 95 (251)
T PRK14244 16 GSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKP 95 (251)
T ss_pred CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCc
Confidence 346799999999999999999999999999999999997531 2 368999999987632 2466799999999
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 76 VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 76 ~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
.+++. ||+||+.+....+. .....++.++.+.++++.+||.+...+.. +..+.+||||||||++||++|+.+|++|+
T Consensus 96 ~~~~~-tv~~ni~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~Gq~qrv~laral~~~p~lll 172 (251)
T PRK14244 96 NPFPK-SIYDNVAYGPKLHG-LAKNKKKLDEIVEKSLTSVGLWEELGDRL-KDSAFELSGGQQQRLCIARAIAVKPTMLL 172 (251)
T ss_pred ccccC-CHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHcCCCchhhhHh-hcChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 88886 99999988643321 11123344566888999999965221111 23467999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|||||+|||+.++..+.+.|+++++ |+|||++||++. ++.+.||++++|++|++++.|+++++.
T Consensus 173 lDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (251)
T PRK14244 173 MDEPCSALDPVATNVIENLIQELKK-NFTIIVVTHSMK-QAKKVSDRVAFFQSGRIVEYNTTQEIF 236 (251)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHhhcCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999864 899999999975 577889999999999999999987763
No 154
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.5e-41 Score=339.30 Aligned_cols=211 Identities=22% Similarity=0.420 Sum_probs=176.1
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC-C--CcccEEEECCccCCc------cccccEEEEccCCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYSK------SLKSKIGFVTQDDV 76 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~-~--~~~G~I~~~g~~~~~------~~~~~i~yv~Q~~~ 76 (583)
++.+|+|+|++|++||+++|+||||||||||+++|+|.... + +++|+|.++|+++.. ..++.++|++|+..
T Consensus 16 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~ 95 (252)
T PRK14256 16 KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPN 95 (252)
T ss_pred CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCC
Confidence 46799999999999999999999999999999999997532 2 258999999987632 24677999999999
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEE
Q 007952 77 LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFL 156 (583)
Q Consensus 77 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illL 156 (583)
+++.+|++||+.+..... ...+.++.+++++++++.+|+.+...... +..+..||||||||++||++|+.+|++|+|
T Consensus 96 ~~~~~tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~qrl~laral~~~p~llll 172 (252)
T PRK14256 96 PFPAMSIYDNVIAGYKLN--GRVNRSEADEIVESSLKRVALWDEVKDRL-KSNAMELSGGQQQRLCIARTIAVKPEVILM 172 (252)
T ss_pred CCCcCcHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCchhhhHHh-hCCcCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999998764322 11233444567889999999864211111 234679999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 157 DEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 157 DEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+.||++++|++|+++..|++++..
T Consensus 173 DEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14256 173 DEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQ-QAARVSDYTAFFYMGDLVECGETKKIF 235 (252)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHH-HHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999976 689999999975 577899999999999999999988763
No 155
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=3.5e-41 Score=335.52 Aligned_cols=203 Identities=24% Similarity=0.390 Sum_probs=172.0
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCC---CcccEEEECCccCCcc-c-cccEEEEccCCC--CCCCC
Q 007952 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPYSKS-L-KSKIGFVTQDDV--LFPHL 81 (583)
Q Consensus 9 iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~---~~~G~I~~~g~~~~~~-~-~~~i~yv~Q~~~--~~~~l 81 (583)
+|+|+|+++++||+++|+||||||||||+|+|+|... + +.+|+|.++|+++... . ++.++|++|++. +.+.+
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 79 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLP-PGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLF 79 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CccCccccEEEECCEechhhhhhhheeEEEecCchhhcCccc
Confidence 5899999999999999999999999999999999753 2 1789999999887532 2 357999999984 56778
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCc---cccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeC
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER---CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 158 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~---~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDE 158 (583)
|++|++.+...... ...++..++++++++.+|+.+ ..+ ..+..||||||||++||++|+.+|++|+|||
T Consensus 80 t~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~~~LS~G~~qrv~laral~~~p~vllLDE 151 (230)
T TIGR02770 80 TMGNHAIETLRSLG---KLSKQARALILEALEAVGLPDPEEVLK-----KYPFQLSGGMLQRVMIALALLLEPPFLIADE 151 (230)
T ss_pred CHHHHHHHHHHHcC---ccHHHHHHHHHHHHHHcCCCchHHHHh-----CChhhcCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 99999987643221 122344567899999999973 333 3467899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 159 PTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 159 PtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
||+|||+.++..+.+.|++++++ |+|||+++|++. ++...+|++++|++|+++..|+++++.
T Consensus 152 Pt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 152 PTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLG-VVARIADEVAVMDDGRIVERGTVKEIF 214 (230)
T ss_pred CccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999874 899999999975 577899999999999999999988764
No 156
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.8e-41 Score=334.98 Aligned_cols=206 Identities=29% Similarity=0.484 Sum_probs=179.3
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc--cccccEEEEccCCCCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~--~~~~~i~yv~Q~~~~~~~lT 82 (583)
+++.+++|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|+++.+ ..++.++|++|++.+++.+|
T Consensus 11 ~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~--~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t 88 (232)
T cd03300 11 GGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFET--PTSGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLT 88 (232)
T ss_pred CCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcCcCChhhcceEEEecccccCCCCc
Confidence 35679999999999999999999999999999999999653 578999999987753 23567999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCC
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 162 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsg 162 (583)
++||+.+....+. .+.....++++++++.+|+.+..++. +..||||||||++||++|+.+|++++|||||+|
T Consensus 89 ~~~nl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~lS~G~~qrl~laral~~~p~llllDEP~~g 160 (232)
T cd03300 89 VFENIAFGLRLKK---LPKAEIKERVAEALDLVQLEGYANRK-----PSQLSGGQQQRVAIARALVNEPKVLLLDEPLGA 160 (232)
T ss_pred HHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 9999988654331 23444556788999999998766653 579999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 163 LDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 163 LD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
||+.++..+.+.|++++++ |+|||+++|++. ++.+.||++++|++|++++.|++++..
T Consensus 161 LD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~i~~l~~G~~~~~~~~~~~~ 219 (232)
T cd03300 161 LDLKLRKDMQLELKRLQKELGITFVFVTHDQE-EALTMSDRIAVMNKGKIQQIGTPEEIY 219 (232)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEecCCHHHHH
Confidence 9999999999999999875 899999999974 477899999999999999999877664
No 157
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=3.8e-41 Score=342.68 Aligned_cols=206 Identities=21% Similarity=0.454 Sum_probs=175.5
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCC--CCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDV--LFP 79 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~--~~~ 79 (583)
.+++|+|+|+++++||+++|+|||||||||||++|+|... +.+|+|.++|.++.. ..++.++|++|++. +++
T Consensus 25 ~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 102 (267)
T PRK15112 25 TVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE--PTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNP 102 (267)
T ss_pred ccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCc
Confidence 3579999999999999999999999999999999999753 678999999987642 22457999999974 678
Q ss_pred CCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeC
Q 007952 80 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 158 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDE 158 (583)
.+||.|++.+...... ....++..++++++++.+||. +..++ .+.+||||||||++||++|+.+|++|+|||
T Consensus 103 ~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~LS~G~~qrv~laral~~~p~lllLDE 175 (267)
T PRK15112 103 RQRISQILDFPLRLNT--DLEPEQREKQIIETLRQVGLLPDHASY-----YPHMLAPGQKQRLGLARALILRPKVIIADE 175 (267)
T ss_pred chhHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCChHHHhc-----CchhcCHHHHHHHHHHHHHHhCCCEEEEcC
Confidence 8899999988654321 123445556788999999994 44443 357999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 159 PTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 159 PtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|++++.|++++..
T Consensus 176 Pt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 238 (267)
T PRK15112 176 ALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLG-MMKHISDQVLVMHQGEVVERGSTADVL 238 (267)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhcCEEEEEECCEEEecCCHHHHh
Confidence 99999999999999999999875 899999999975 577889999999999999999887754
No 158
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.3e-41 Score=332.32 Aligned_cols=194 Identities=26% Similarity=0.441 Sum_probs=166.6
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc--cccccEEEEccCCCCCCCCCHHHHHH
Q 007952 11 NGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKSKIGFVTQDDVLFPHLTVKETLT 88 (583)
Q Consensus 11 ~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~--~~~~~i~yv~Q~~~~~~~lTv~e~l~ 88 (583)
.|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|.++.. ..++.++|++|++.+++.+||+||+.
T Consensus 15 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~--~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~ 92 (211)
T cd03298 15 MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFET--PQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVG 92 (211)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHh
Confidence 39999999999999999999999999999999753 678999999987643 23467999999999999999999998
Q ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHH
Q 007952 89 YAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTA 168 (583)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~~~ 168 (583)
+....+. . ..++.+++++++++.+||.+..++. +.+||||||||++||++|+.+|++++|||||+|||+.++
T Consensus 93 ~~~~~~~--~-~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~ 164 (211)
T cd03298 93 LGLSPGL--K-LTAEDRQAIEVALARVGLAGLEKRL-----PGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALR 164 (211)
T ss_pred ccccccc--C-ccHHHHHHHHHHHHHcCCHHHHhCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 7543111 1 1223456788999999998766653 579999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEc
Q 007952 169 LRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 215 (583)
Q Consensus 169 ~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 215 (583)
..+.+.|++++++ |+|||++||++. ++.+.||++++|++|+++..|
T Consensus 165 ~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 165 AEMLDLVLDLHAETKMTVLMVTHQPE-DAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HHHHHHHHHHHHhcCCEEEEEecCHH-HHHhhhCEEEEEECCEEeecC
Confidence 9999999999764 899999999965 477889999999999998754
No 159
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.7e-41 Score=340.39 Aligned_cols=212 Identities=22% Similarity=0.390 Sum_probs=176.0
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCC---CcccEEEECCccCCc------cccccEEEEccCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPYSK------SLKSKIGFVTQDD 75 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~---~~~G~I~~~g~~~~~------~~~~~i~yv~Q~~ 75 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|...++ +++|+|.++|+++.. ..++.++|++|++
T Consensus 15 ~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~ 94 (258)
T PRK14241 15 GSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRP 94 (258)
T ss_pred CCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEcccc
Confidence 3467999999999999999999999999999999999976421 268999999987631 2456799999999
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 76 VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 76 ~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
.+++.+||+||+.+....+. ..+.++.+++++++++.+|+.+...... +..+.+||||||||++||++|+.+|++|+
T Consensus 95 ~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~qrv~laral~~~p~lll 171 (258)
T PRK14241 95 NPFPTMSIRDNVVAGLKLNG--VRNKKDLDELVEKSLRGANLWNEVKDRL-DKPGGGLSGGQQQRLCIARAIAVEPDVLL 171 (258)
T ss_pred ccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhHh-hCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999999988754321 1234455567889999999842111111 23467999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEc------CCeEEEEcChhhHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG------KGSLLYFGKASEAM 221 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~------~G~iv~~G~~~~~~ 221 (583)
|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+.||++++|+ +|++++.|++++..
T Consensus 172 lDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~~-~~~~~~d~i~~l~~~~~~~~g~i~~~~~~~~~~ 241 (258)
T PRK14241 172 MDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNMQ-QAARVSDQTAFFNLEATGKPGRLVEIDDTEKIF 241 (258)
T ss_pred EcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEecccCCCCceEEecCCHHHHH
Confidence 9999999999999999999999964 689999999965 5778999999997 79999999988764
No 160
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.2e-41 Score=347.09 Aligned_cols=202 Identities=24% Similarity=0.427 Sum_probs=172.1
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCC---------ccccccEEEEccCCC--
Q 007952 8 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---------KSLKSKIGFVTQDDV-- 76 (583)
Q Consensus 8 ~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~---------~~~~~~i~yv~Q~~~-- 76 (583)
.+|+|+|+++++||+++|+||||||||||+|+|+|... +.+|+|.++|+++. ...++.++|++|++.
T Consensus 25 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~ 102 (289)
T PRK13645 25 KALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLII--SETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQ 102 (289)
T ss_pred ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEccccccccccHHHHhccEEEEEeCcchh
Confidence 59999999999999999999999999999999999653 57899999998753 124567999999973
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 77 LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 77 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
+++ .||+||+.+..... ....++..++++++++.++|. +..++ .+..||||||||++||+||+.+|++|+
T Consensus 103 ~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~-----~~~~LS~Gq~qrv~laral~~~p~lLl 173 (289)
T PRK13645 103 LFQ-ETIEKDIAFGPVNL---GENKQEAYKKVPELLKLVQLPEDYVKR-----SPFELSGGQKRRVALAGIIAMDGNTLV 173 (289)
T ss_pred hhh-hHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhcC-----ChhhCCHHHHHHHHHHHHHHhCCCEEE
Confidence 444 59999998865321 123445556788899999994 45554 457999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|++++.|++++..
T Consensus 174 LDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 239 (289)
T PRK13645 174 LDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD-QVLRIADEVIVMHEGKVISIGSPFEIF 239 (289)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999764 899999999975 577899999999999999999988764
No 161
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.7e-41 Score=331.68 Aligned_cols=196 Identities=31% Similarity=0.514 Sum_probs=168.4
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc--------cccccEEEEccCC
Q 007952 4 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--------SLKSKIGFVTQDD 75 (583)
Q Consensus 4 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~--------~~~~~i~yv~Q~~ 75 (583)
.+++.+ |+|+++++ |+++|+||||||||||+++|+|... +.+|+|.++|.++.. ..++.++|++|++
T Consensus 10 ~~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~ 84 (214)
T cd03297 10 LPDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEK--PDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQY 84 (214)
T ss_pred cCCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEecccccchhhhhhHhhcEEEEecCC
Confidence 344555 99999999 9999999999999999999999753 578999999987631 2356799999999
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 76 VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 76 ~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
.+++.+|++||+.+..... ..+..+++++++++.+|+++..++ .+.+||||||||++||++|+.+|++++
T Consensus 85 ~~~~~~t~~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~la~al~~~p~lll 154 (214)
T cd03297 85 ALFPHLNVRENLAFGLKRK-----RNREDRISVDELLDLLGLDHLLNR-----YPAQLSGGEKQRVALARALAAQPELLL 154 (214)
T ss_pred ccCCCCCHHHHHHHHHhhC-----CHHHHHHHHHHHHHHcCCHhHhhc-----CcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999998764321 233445678899999999865554 457999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEc
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 215 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 215 (583)
|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|+++..|
T Consensus 155 lDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 155 LDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLS-EAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHH-HHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999875 899999999965 477889999999999998765
No 162
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.7e-41 Score=338.48 Aligned_cols=211 Identities=28% Similarity=0.426 Sum_probs=173.9
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCC---cccEEEECCccCCc------cccccEEEEccCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT---VGGSITYNDHPYSK------SLKSKIGFVTQDD 75 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~---~~G~I~~~g~~~~~------~~~~~i~yv~Q~~ 75 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|.....+ .+|+|.++|+++.. ..++.++|++|++
T Consensus 16 ~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~ 95 (252)
T PRK14239 16 NKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQP 95 (252)
T ss_pred CCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCC
Confidence 35679999999999999999999999999999999999643223 58999999987631 2356799999999
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 76 VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 76 ~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
.+++ +||+||+.+....+. ....+..++++.++++.+++.+..... -+..+++||||||||++||++|+.+|++|+
T Consensus 96 ~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LS~G~~qrv~laral~~~p~lll 171 (252)
T PRK14239 96 NPFP-MSIYENVVYGLRLKG--IKDKQVLDEAVEKSLKGASIWDEVKDR-LHDSALGLSGGQQQRVCIARVLATSPKIIL 171 (252)
T ss_pred ccCc-CcHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCchhHHHH-HhcCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 8887 799999988654321 112333456678889999875321111 123567999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+.||++++|++|++++.|+++++.
T Consensus 172 lDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 235 (252)
T PRK14239 172 LDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQ-QASRISDRTGFFLDGDLIEYNDTKQMF 235 (252)
T ss_pred EcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999975 689999999965 577899999999999999999988863
No 163
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=4.8e-41 Score=334.05 Aligned_cols=195 Identities=33% Similarity=0.515 Sum_probs=168.3
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCcc-------c-cccEEEEccCCCCCC
Q 007952 8 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS-------L-KSKIGFVTQDDVLFP 79 (583)
Q Consensus 8 ~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~-------~-~~~i~yv~Q~~~~~~ 79 (583)
.+|+|+|+++++||+++|+||||||||||+++|+|.. ++++|+|.++|+++... . ++.++|++|++.+++
T Consensus 24 ~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~--~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~ 101 (228)
T PRK10584 24 SILTGVELVVKRGETIALIGESGSGKSTLLAILAGLD--DGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIP 101 (228)
T ss_pred EEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC--CCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCC
Confidence 5999999999999999999999999999999999965 35789999999876421 1 257999999999999
Q ss_pred CCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCC
Q 007952 80 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEP 159 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEP 159 (583)
.+||.||+.+....+ ..+.++..++++++++.+|+.+..++ .+..||||||||++||++|+.+|++|+||||
T Consensus 102 ~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~Ge~qrl~la~al~~~p~llllDEP 173 (228)
T PRK10584 102 TLNALENVELPALLR---GESSRQSRNGAKALLEQLGLGKRLDH-----LPAQLSGGEQQRVALARAFNGRPDVLFADEP 173 (228)
T ss_pred CcCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 999999998865432 12344556778999999999876655 3578999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEE
Q 007952 160 TSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 214 (583)
Q Consensus 160 tsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 214 (583)
|+|||+.++..+.+.|++++++ |.|||+++|++. .+ +.+|++++|++|++++.
T Consensus 174 t~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 174 TGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ-LA-ARCDRRLRLVNGQLQEE 227 (228)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEECCEEEec
Confidence 9999999999999999999765 899999999975 35 56999999999998753
No 164
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-41 Score=374.57 Aligned_cols=210 Identities=22% Similarity=0.329 Sum_probs=179.5
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-----cccccEEEEccCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-----SLKSKIGFVTQDDVLFP 79 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-----~~~~~i~yv~Q~~~~~~ 79 (583)
+++.+|+|+|+++++||+++|+||||||||||+|+|+|...+.+++|+|.++|+++.. ..++.++||+|++.+++
T Consensus 16 ~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 95 (506)
T PRK13549 16 GGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVK 95 (506)
T ss_pred CCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCC
Confidence 4567999999999999999999999999999999999976421378999999988742 12467999999999999
Q ss_pred CCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCC
Q 007952 80 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEP 159 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEP 159 (583)
.+||+||+.+....+.....+.++..++++++++.+|+.+..++. +.+||||||||++||++|+.+|++|+||||
T Consensus 96 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGqkqrv~la~al~~~p~lllLDEP 170 (506)
T PRK13549 96 ELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATP-----VGNLGLGQQQLVEIAKALNKQARLLILDEP 170 (506)
T ss_pred CCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccc-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 999999998864322111123444556789999999998766654 579999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhH
Q 007952 160 TSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 220 (583)
Q Consensus 160 tsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 220 (583)
|+|||+.++..+.+.|++++++|+|||++||++. .+.+.||++++|++|++++.|++++.
T Consensus 171 t~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 230 (506)
T PRK13549 171 TASLTESETAVLLDIIRDLKAHGIACIYISHKLN-EVKAISDTICVIRDGRHIGTRPAAGM 230 (506)
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhcCEEEEEECCEEeeecccccC
Confidence 9999999999999999999888999999999965 57788999999999999999998764
No 165
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-41 Score=338.28 Aligned_cols=201 Identities=31% Similarity=0.472 Sum_probs=172.5
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPH 80 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~ 80 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|.++.. ..++.++|++|++.+++
T Consensus 14 ~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~- 90 (241)
T PRK14250 14 FGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLID--PTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFE- 90 (241)
T ss_pred CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEhhhcChHHhhhcEEEEecCchhch-
Confidence 34679999999999999999999999999999999999653 578999999987642 34567999999998887
Q ss_pred CCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCC
Q 007952 81 LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEP 159 (583)
Q Consensus 81 lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEP 159 (583)
.||+||+.+....+ . ...+++.++++.+||+ +..++ .+..||||||||++||++|+.+|++|+||||
T Consensus 91 ~tv~e~l~~~~~~~---~----~~~~~~~~~l~~~~l~~~~~~~-----~~~~LS~G~~qrl~la~al~~~p~llllDEP 158 (241)
T PRK14250 91 GTVKDNIEYGPMLK---G----EKNVDVEYYLSIVGLNKEYATR-----DVKNLSGGEAQRVSIARTLANNPEVLLLDEP 158 (241)
T ss_pred hhHHHHHhcchhhc---C----cHHHHHHHHHHHcCCCHHHhhC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 69999998753221 1 1234678899999996 34443 4678999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 160 TSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 160 tsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|+++..|+++++.
T Consensus 159 t~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (241)
T PRK14250 159 TSALDPTSTEIIEELIVKLKNKMNLTVIWITHNME-QAKRIGDYTAFLNKGILVEYAKTYDFF 220 (241)
T ss_pred cccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH-HHHHhCCEEEEEeCCEEEEeCCHHHHh
Confidence 9999999999999999999874 999999999975 477889999999999999999988763
No 166
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.6e-41 Score=335.92 Aligned_cols=200 Identities=26% Similarity=0.457 Sum_probs=172.2
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc--cccccEEEEccCCCCCCCCCHHHHHH
Q 007952 11 NGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKSKIGFVTQDDVLFPHLTVKETLT 88 (583)
Q Consensus 11 ~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~--~~~~~i~yv~Q~~~~~~~lTv~e~l~ 88 (583)
.|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. ..++.++|++|++.+++.+|+.||+.
T Consensus 16 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~ 93 (232)
T PRK10771 16 MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLT--PASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIG 93 (232)
T ss_pred ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHh
Confidence 49999999999999999999999999999999653 678999999987643 23467999999999999999999998
Q ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHH
Q 007952 89 YAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTA 168 (583)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~~~ 168 (583)
+...... .. .+..+++++++++.+||++..++. ++.||||||||++||++++.+|++++|||||+|||+.++
T Consensus 94 ~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~ 165 (232)
T PRK10771 94 LGLNPGL--KL-NAAQREKLHAIARQMGIEDLLARL-----PGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALR 165 (232)
T ss_pred ccccccc--CC-CHHHHHHHHHHHHHcCcHHHHhCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 7532110 11 223456789999999998766654 579999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 169 LRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 169 ~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
..+.+.|++++++ |+|||++||++. ++.+.||++++|++|++++.|++++..
T Consensus 166 ~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~i~~~g~~~~~~ 218 (232)
T PRK10771 166 QEMLTLVSQVCQERQLTLLMVSHSLE-DAARIAPRSLVVADGRIAWDGPTDELL 218 (232)
T ss_pred HHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999764 899999999975 577889999999999999999987764
No 167
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.5e-41 Score=334.69 Aligned_cols=203 Identities=31% Similarity=0.551 Sum_probs=177.1
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc--cccccEEEEccCCCCCCCCCHHH
Q 007952 8 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKSKIGFVTQDDVLFPHLTVKE 85 (583)
Q Consensus 8 ~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~--~~~~~i~yv~Q~~~~~~~lTv~e 85 (583)
++|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|.++.. ..++.++|++|++.+++.+|+.|
T Consensus 13 ~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~--p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e 90 (235)
T cd03299 13 FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIK--PDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYK 90 (235)
T ss_pred ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHH
Confidence 38999999999999999999999999999999999653 678999999987643 23567999999999999999999
Q ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCH
Q 007952 86 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS 165 (583)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~ 165 (583)
|+.+..... ..+..+..+++.++++.+||.+..++. ++.||||||||++||++|+.+|++++|||||+|||+
T Consensus 91 ~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~ 162 (235)
T cd03299 91 NIAYGLKKR---KVDKKEIERKVLEIAEMLGIDHLLNRK-----PETLSGGEQQRVAIARALVVNPKILLLDEPFSALDV 162 (235)
T ss_pred HHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHHhcC-----cccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCH
Confidence 998764322 123445556788999999998766654 578999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 166 TTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 166 ~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|++++.|++++..
T Consensus 163 ~~~~~l~~~l~~~~~~~~~tili~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 218 (235)
T cd03299 163 RTKEKLREELKKIRKEFGVTVLHVTHDFE-EAWALADKVAIMLNGKLIQVGKPEEVF 218 (235)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 9999999999999765 999999999975 477889999999999999999987653
No 168
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=5.9e-41 Score=330.01 Aligned_cols=197 Identities=26% Similarity=0.475 Sum_probs=169.8
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc--cccccEEEEccCCCCCCCCCHHHH
Q 007952 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKSKIGFVTQDDVLFPHLTVKET 86 (583)
Q Consensus 9 iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~--~~~~~i~yv~Q~~~~~~~lTv~e~ 86 (583)
+++|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|+++.+ ..++.++|++|++.+++.+|++||
T Consensus 13 ~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en 90 (213)
T TIGR01277 13 LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIE--PASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQN 90 (213)
T ss_pred cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHH
Confidence 5789999999999999999999999999999999653 578999999988643 345779999999999999999999
Q ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHH
Q 007952 87 LTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDST 166 (583)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~ 166 (583)
+.+...... ....+.+++++++++.+||++..++ .++.||||||||++||++|+.+|++++|||||+|||+.
T Consensus 91 ~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~ 162 (213)
T TIGR01277 91 IGLGLHPGL---KLNAEQQEKVVDAAQQVGIADYLDR-----LPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPL 162 (213)
T ss_pred HHhHhhccC---CccHHHHHHHHHHHHHcCcHHHhhC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHH
Confidence 987543211 1122235568889999999876655 46799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcC
Q 007952 167 TALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 216 (583)
Q Consensus 167 ~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 216 (583)
++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|+++..|.
T Consensus 163 ~~~~~~~~l~~~~~~~~~tii~vsh~~~-~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 163 LREEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCeEEEEECCeEEEecC
Confidence 999999999999765 899999999965 4678899999999999998875
No 169
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.3e-41 Score=341.09 Aligned_cols=211 Identities=24% Similarity=0.399 Sum_probs=176.8
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC---CCcccEEEECCccCCc------cccccEEEEccCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME---PTVGGSITYNDHPYSK------SLKSKIGFVTQDD 75 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~---~~~~G~I~~~g~~~~~------~~~~~i~yv~Q~~ 75 (583)
+++++|+|+|+++++||+++|+||||||||||+++|+|.... .+++|+|.++|+++.. ..++.++|++|++
T Consensus 31 ~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~ 110 (267)
T PRK14237 31 GKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRP 110 (267)
T ss_pred CCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCC
Confidence 357899999999999999999999999999999999997642 1478999999988642 2366799999999
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 76 VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 76 ~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
.+++ .||+||+.++.... ....+++.++++.++++.++|.+..+... +..+++||||||||++||++|+.+|++|+
T Consensus 111 ~~~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~i~~~~-~~~~~~LS~G~~qrl~laral~~~p~lll 186 (267)
T PRK14237 111 NPFA-KSIYENITFALERA--GVKDKKVLDEIVETSLKQAALWDQVKDDL-HKSALTLSGGQQQRLCIARAIAVKPDILL 186 (267)
T ss_pred cccc-ccHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCCchhhhhh-cCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 8887 59999998865321 11234455667889999999864322222 24578999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|||||+|||+.++..+.+.|+++++ +.|||++||++. ++.+.||++++|++|++++.|++++..
T Consensus 187 LDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 250 (267)
T PRK14237 187 MDEPASALDPISTMQLEETMFELKK-NYTIIIVTHNMQ-QAARASDYTAFFYLGDLIEYDKTRNIF 250 (267)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999964 799999999975 577899999999999999999988863
No 170
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.6e-41 Score=342.23 Aligned_cols=203 Identities=25% Similarity=0.427 Sum_probs=175.9
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCC-CCCCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDV-LFPHL 81 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~-~~~~l 81 (583)
+.+|+|+|+++++||+++|+|+||||||||+++|+|... +.+|+|.++|+++.. ..++.++|++|++. .++..
T Consensus 20 ~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~ 97 (277)
T PRK13642 20 VNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE--EFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGA 97 (277)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccC
Confidence 459999999999999999999999999999999999763 678999999988642 34677999999974 57778
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 161 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPts 161 (583)
||.||+.+..... ..+.++..++++++++.+||.+..++ .+..||||||||++||++|+.+|++|+|||||+
T Consensus 98 tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~ 169 (277)
T PRK13642 98 TVEDDVAFGMENQ---GIPREEMIKRVDEALLAVNMLDFKTR-----EPARLSGGQKQRVAVAGIIALRPEIIILDESTS 169 (277)
T ss_pred CHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHhHhhC-----CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 9999998765321 23445556678999999999876665 467999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 162 GLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 162 gLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|||+.++..+.+.|++++++ |+|||++||++.. +. .||++++|++|+++..|++++..
T Consensus 170 ~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~-~~-~~d~i~~l~~G~i~~~g~~~~~~ 228 (277)
T PRK13642 170 MLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDE-AA-SSDRILVMKAGEIIKEAAPSELF 228 (277)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HH-hCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999875 9999999999764 54 69999999999999999988764
No 171
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.5e-41 Score=336.90 Aligned_cols=211 Identities=25% Similarity=0.450 Sum_probs=174.4
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC-C--CcccEEEECCccCCc------cccccEEEEccCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYSK------SLKSKIGFVTQDD 75 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~-~--~~~G~I~~~g~~~~~------~~~~~i~yv~Q~~ 75 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|.... + +++|+|.++|+++.+ ..++.++|++|++
T Consensus 14 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~ 93 (250)
T PRK14240 14 GDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQP 93 (250)
T ss_pred CCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCC
Confidence 346799999999999999999999999999999999996532 2 258999999987642 2466799999999
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 76 VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 76 ~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
.+++ +|++||+.+....+. ..+.++.+++++++++.+++.+...... +..+.+||||||||++||++|+.+|++|+
T Consensus 94 ~~~~-~t~~~ni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~G~~qrv~laral~~~p~lll 169 (250)
T PRK14240 94 NPFP-MSIYDNVAYGPRTHG--IKDKKKLDEIVEKSLKGAALWDEVKDRL-KKSALGLSGGQQQRLCIARALAVEPEVLL 169 (250)
T ss_pred ccCc-ccHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhHHHH-hcCCCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 8888 899999998654321 1123445567888899988753111111 23467999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|||||+|||+.++..+.+.|+++++ ++|||++||++. .+.+.||++++|++|+++..|++++..
T Consensus 170 lDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~~ 233 (250)
T PRK14240 170 MDEPTSALDPISTLKIEELIQELKK-DYTIVIVTHNMQ-QASRISDKTAFFLNGEIVEFGDTVDLF 233 (250)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEEeCHH-HHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999964 899999999964 577889999999999999999988763
No 172
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8e-41 Score=337.44 Aligned_cols=212 Identities=25% Similarity=0.395 Sum_probs=174.2
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCC---cccEEEECCccCCc------cccccEEEEccCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT---VGGSITYNDHPYSK------SLKSKIGFVTQDD 75 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~---~~G~I~~~g~~~~~------~~~~~i~yv~Q~~ 75 (583)
+++.+|+|+|+++++||+++|+||||||||||+|+|+|...+.+ .+|+|.++|+++.. ..++.++|++|++
T Consensus 15 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~ 94 (252)
T PRK14272 15 GDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKP 94 (252)
T ss_pred CCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccC
Confidence 35679999999999999999999999999999999999764212 47999999987642 2356799999999
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 76 VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 76 ~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
.+++.+|+.||+.+..... .....++..+++++.++.+++.+..... .+..++.||||||||++||++|+.+|++|+
T Consensus 95 ~~~~~~t~~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LS~G~~qrv~laral~~~p~lll 171 (252)
T PRK14272 95 NPFPTMSVFDNVVAGLKLA--GIRDRDHLMEVAERSLRGAALWDEVKDR-LKTPATGLSGGQQQRLCIARALAVEPEILL 171 (252)
T ss_pred ccCcCCCHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCcchhhhhh-hcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999998765322 1112334456677778877764211111 123467999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|||||+|||+.++..+.+.|+++++ ++|||++||++. .+.+.||++++|++|++++.|++++..
T Consensus 172 lDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14272 172 MDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNMH-QAARVSDTTSFFLVGDLVEHGPTDQLF 235 (252)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999975 799999999975 577889999999999999999988864
No 173
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.6e-41 Score=337.47 Aligned_cols=211 Identities=25% Similarity=0.404 Sum_probs=175.0
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC-C--CcccEEEECCccCCc------cccccEEEEccCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYSK------SLKSKIGFVTQDD 75 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~-~--~~~G~I~~~g~~~~~------~~~~~i~yv~Q~~ 75 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|.... + +.+|+|.++|+++.. ..++.++|++|++
T Consensus 15 ~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~ 94 (251)
T PRK14270 15 GEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKP 94 (251)
T ss_pred CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCC
Confidence 346799999999999999999999999999999999996532 1 268999999988742 2356799999999
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 76 VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 76 ~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
.+++ +|++||+.+...... ....++..++++++++.+|+.+..... -+..+++||||||||++||++|+.+|++++
T Consensus 95 ~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LS~G~~qrv~laral~~~p~lll 170 (251)
T PRK14270 95 NPFP-MSIYDNVAYGPRIHG--IKDKKELDKIVEWALKKAALWDEVKDD-LKKSALKLSGGQQQRLCIARTIAVKPDVIL 170 (251)
T ss_pred CcCC-CcHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCchhhhhH-hhCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9887 899999998654321 112344556788899999885311111 123567999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+.||++++|++|++++.|+++++.
T Consensus 171 lDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14270 171 MDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQ-QASRVSDYTAFFLMGDLIEFNKTEKIF 234 (251)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHH-HHHHhcCEEEEEECCeEEEeCCHHHHh
Confidence 9999999999999999999999976 689999999975 577889999999999999999998863
No 174
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.4e-41 Score=337.34 Aligned_cols=211 Identities=25% Similarity=0.462 Sum_probs=175.5
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC-C--CcccEEEECCccCCc------cccccEEEEccCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYSK------SLKSKIGFVTQDD 75 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~-~--~~~G~I~~~g~~~~~------~~~~~i~yv~Q~~ 75 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|.... + +.+|+|.++|.++.. ..++.++|++|++
T Consensus 14 ~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~ 93 (250)
T PRK14262 14 GEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKP 93 (250)
T ss_pred CCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCC
Confidence 356799999999999999999999999999999999997532 1 368999999987642 2356799999999
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 76 VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 76 ~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
.+++ .|++||+.+...... ....+..++.+++.++.+|+.+..+.. .+..+.+||||||||++||++|+.+|++|+
T Consensus 94 ~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LS~Gq~qr~~la~al~~~p~lll 169 (250)
T PRK14262 94 TPFP-MSIYDNVAFGPRIHG--VKSKHKLDRIVEESLKKAALWDEVKSE-LNKPGTRLSGGQQQRLCIARALAVEPEVIL 169 (250)
T ss_pred ccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCchhHHH-HhCChhhcCHHHHHHHHHHHHHhCCCCEEE
Confidence 9888 899999998654321 112334456678889999986421111 234568999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|||||+|||+.++..+.+.|+++++ ++|||++||++. .+.+.||++++|++|+++..|+++++.
T Consensus 170 lDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14262 170 LDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIG-QAIRIADYIAFMYRGELIEYGPTREIV 233 (250)
T ss_pred EeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 9999999999999999999999975 789999999975 477889999999999999999988764
No 175
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.6e-41 Score=324.91 Aligned_cols=172 Identities=50% Similarity=0.872 Sum_probs=154.3
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHHH
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKET 86 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~ 86 (583)
+.+|+|+|+++++||+++|+||||||||||+++|+|....++.+|+|.++|+++....++.++|++|++.+++.+||+||
T Consensus 20 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~~ 99 (192)
T cd03232 20 RQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREA 99 (192)
T ss_pred eEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceEEecccCccccCCcHHHH
Confidence 67999999999999999999999999999999999965334679999999988754556789999999999999999999
Q ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHH
Q 007952 87 LTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDST 166 (583)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~ 166 (583)
+.+.... + +||||||||++||++|+.+|++++|||||+|||+.
T Consensus 100 l~~~~~~-------------------~------------------~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~ 142 (192)
T cd03232 100 LRFSALL-------------------R------------------GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQ 142 (192)
T ss_pred HHHHHHH-------------------h------------------cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHH
Confidence 9874210 0 59999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcC-CeEEEEc
Q 007952 167 TALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK-GSLLYFG 215 (583)
Q Consensus 167 ~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~-G~iv~~G 215 (583)
++..+.+.|++++++|+|||++||++..++.+.||++++|++ |++++.|
T Consensus 143 ~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 143 AAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 999999999999877999999999986446788999999999 9999876
No 176
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=6.8e-41 Score=341.19 Aligned_cols=208 Identities=25% Similarity=0.388 Sum_probs=174.0
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCc--------ccEEEECCccCCc----cccccEEEEc
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTV--------GGSITYNDHPYSK----SLKSKIGFVT 72 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~--------~G~I~~~g~~~~~----~~~~~i~yv~ 72 (583)
+++.+|+|+|+++++||+++|+||||||||||+|+|+|.+. +. +|+|.++|+++.. ..++.++|++
T Consensus 12 ~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~--p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~ 89 (272)
T PRK13547 12 RHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLT--GGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLP 89 (272)
T ss_pred CCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CcccccccCCceEEEECCEEcccCCHHHHHhhcEEec
Confidence 45679999999999999999999999999999999999763 33 8999999987642 2345689999
Q ss_pred cCCCCCCCCCHHHHHHHHHHcCCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHH---
Q 007952 73 QDDVLFPHLTVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEII--- 148 (583)
Q Consensus 73 Q~~~~~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~--- 148 (583)
|++..++.+||+||+.+....... .....++..++++++++.+|+.+..++ .+..||||||||++||++|+
T Consensus 90 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LSgG~~qrv~laral~~~~ 164 (272)
T PRK13547 90 QAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGR-----DVTTLSGGELARVQFARVLAQLW 164 (272)
T ss_pred ccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcC-----CcccCCHHHHHHHHHHHHHhccc
Confidence 998766678999999875321100 011112344668899999999876554 46799999999999999999
Q ss_pred ------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhH
Q 007952 149 ------INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 220 (583)
Q Consensus 149 ------~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 220 (583)
.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.||++++|++|++++.|+++++
T Consensus 165 ~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 242 (272)
T PRK13547 165 PPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPN-LAARHADRIAMLADGAIVAHGAPADV 242 (272)
T ss_pred cccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEECCeEEEecCHHHH
Confidence 599999999999999999999999999999876 899999999975 57789999999999999999998776
No 177
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-40 Score=335.01 Aligned_cols=210 Identities=25% Similarity=0.403 Sum_probs=173.6
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCC---CcccEEEECCccCCc-----cccccEEEEccCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPYSK-----SLKSKIGFVTQDDV 76 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~---~~~G~I~~~g~~~~~-----~~~~~i~yv~Q~~~ 76 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|..... +.+|+|.++|.++.. ..++.++|++|++.
T Consensus 14 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~ 93 (249)
T PRK14253 14 GENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPN 93 (249)
T ss_pred CCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCC
Confidence 3567999999999999999999999999999999999965321 358999999987631 34567999999999
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEE
Q 007952 77 LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFL 156 (583)
Q Consensus 77 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illL 156 (583)
+++ .||.||+.+..... ...+++..++++.+.++.+++.+...... +..+.+||||||||++||++|+.+|++++|
T Consensus 94 ~~~-~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~LS~G~~qrv~laral~~~p~llll 169 (249)
T PRK14253 94 PFP-MSIYENVAYGLRAQ--GIKDKKVLDEVVERSLRGAALWDEVKDRL-KSHAFGLSGGQQQRLCIARTIAMEPDVILM 169 (249)
T ss_pred cCc-ccHHHHHHhHHHhc--CCCchHHHHHHHHHHHHHcCCchhhhHHh-hcCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 887 79999998864321 11123344566788888888754221111 234679999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhH
Q 007952 157 DEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 220 (583)
Q Consensus 157 DEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 220 (583)
||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+.||++++|++|+++..|++++.
T Consensus 170 DEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (249)
T PRK14253 170 DEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQ-QARRISDRTAFFLMGELVEHDDTQVI 231 (249)
T ss_pred eCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999976 689999999975 57888999999999999999998775
No 178
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=6.3e-41 Score=370.29 Aligned_cols=208 Identities=24% Similarity=0.407 Sum_probs=178.8
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----c-ccccEEEEccCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----S-LKSKIGFVTQDDVLFP 79 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~-~~~~i~yv~Q~~~~~~ 79 (583)
+++++|+|+||++++||+++|+||||||||||+|+|+|.+. +++|+|.++|+++.. . .++.++|++|++.+++
T Consensus 15 ~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 92 (501)
T PRK10762 15 PGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYT--RDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIP 92 (501)
T ss_pred CCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccC
Confidence 45679999999999999999999999999999999999753 578999999987642 1 2457999999999999
Q ss_pred CCCHHHHHHHHHHcCCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeC
Q 007952 80 HLTVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 158 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDE 158 (583)
.+||+||+.++...+.. ...+.++.+++++++++.+||.+..+.. +.+||||||||++||++|+.+|++|+|||
T Consensus 93 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~la~al~~~p~lllLDE 167 (501)
T PRK10762 93 QLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKL-----VGELSIGEQQMVEIAKVLSFESKVIIMDE 167 (501)
T ss_pred CCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCc-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 99999999886432111 1123344556788999999998776654 56999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhH
Q 007952 159 PTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 220 (583)
Q Consensus 159 PtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 220 (583)
||+|||+.++..+.+.|++++++|+|||++|||+. ++.++||++++|++|+++..|++++.
T Consensus 168 Pt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (501)
T PRK10762 168 PTDALTDTETESLFRVIRELKSQGRGIVYISHRLK-EIFEICDDVTVFRDGQFIAEREVADL 228 (501)
T ss_pred CcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEEecCcCcC
Confidence 99999999999999999999888999999999975 57789999999999999999987654
No 179
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=2e-40 Score=335.72 Aligned_cols=207 Identities=27% Similarity=0.418 Sum_probs=173.3
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCcc-----CCc----c----ccccEEEE
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP-----YSK----S----LKSKIGFV 71 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~-----~~~----~----~~~~i~yv 71 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|++ +.. . .++.++|+
T Consensus 17 ~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v 94 (258)
T PRK11701 17 GPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLA--PDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFV 94 (258)
T ss_pred CCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCccccccccccCCHHHHHHHhhcceEEE
Confidence 34679999999999999999999999999999999999653 678999999987 532 1 24569999
Q ss_pred ccCC--CCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCcccChHHHHHHHHHHHHH
Q 007952 72 TQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGERKRVCIGNEII 148 (583)
Q Consensus 72 ~Q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~LSgGerqRv~ia~~L~ 148 (583)
+|++ .+++.+|++||+.+...... .....+.++++.++++.+++.+ ..++ .+..||||||||++|||+|+
T Consensus 95 ~q~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~LS~Gq~qrl~laral~ 167 (258)
T PRK11701 95 HQHPRDGLRMQVSAGGNIGERLMAVG--ARHYGDIRATAGDWLERVEIDAARIDD-----LPTTFSGGMQQRLQIARNLV 167 (258)
T ss_pred eeCcccccCccccHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHcCCChhHHhC-----CCccCCHHHHHHHHHHHHHh
Confidence 9997 46778899999976432111 1122344567889999999963 4443 46799999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 149 INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 149 ~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
.+|++|+|||||+|||+.++..+.+.|++++++ |.|||++||++. .+.+.||++++|++|++++.|+++++.
T Consensus 168 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~~~ 240 (258)
T PRK11701 168 THPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VARLLAHRLLVMKQGRVVESGLTDQVL 240 (258)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999998765 899999999965 466789999999999999999988763
No 180
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8e-41 Score=310.27 Aligned_cols=205 Identities=31% Similarity=0.522 Sum_probs=182.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHHH
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKET 86 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~ 86 (583)
+.+|+|+|++|.+||.++++||||||||||||+++|... |..|+|.+||++++-. -..-|.|+|++.++|.+||.||
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~--P~~G~i~l~~r~i~gP-gaergvVFQ~~~LlPWl~~~dN 94 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT--PSRGSIQLNGRRIEGP-GAERGVVFQNEALLPWLNVIDN 94 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcC--cccceEEECCEeccCC-CccceeEeccCccchhhHHHHH
Confidence 349999999999999999999999999999999999764 6789999999988532 2335899999999999999999
Q ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHH
Q 007952 87 LTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDST 166 (583)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~ 166 (583)
+.|+.+++ .++++++.+++.+.+..+||++..++ ++.+||||||||+.|||||..+|++|+||||+++||.-
T Consensus 95 vafgL~l~---Gi~k~~R~~~a~q~l~~VgL~~~~~~-----~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~ 166 (259)
T COG4525 95 VAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHK-----YIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDAL 166 (259)
T ss_pred HHHHHHhc---CCCHHHHHHHHHHHHHHhCccccccc-----ceEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHH
Confidence 99998876 57889999999999999999987765 46799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhhcCeEEEEcC--CeEEEEcChhhHHHH
Q 007952 167 TALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGK--GSLLYFGKASEAMAY 223 (583)
Q Consensus 167 ~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~--G~iv~~G~~~~~~~~ 223 (583)
+++++.++|-++.+ .|+.++++||+..+ ..-+++++++|+. |+++..-+++-...|
T Consensus 167 tRe~mQelLldlw~~tgk~~lliTH~ieE-AlflatrLvvlsp~pgRvv~~~~~df~rR~ 225 (259)
T COG4525 167 TREQMQELLLDLWQETGKQVLLITHDIEE-ALFLATRLVVLSPGPGRVVERLPLDFARRY 225 (259)
T ss_pred HHHHHHHHHHHHHHHhCCeEEEEeccHHH-HHhhhheeEEecCCCceeeEecCCCHHHHh
Confidence 99999999999875 49999999999765 5568999999985 799988887755444
No 181
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=1e-40 Score=326.30 Aligned_cols=190 Identities=28% Similarity=0.507 Sum_probs=164.2
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCC---c-----cccccEEEEccCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---K-----SLKSKIGFVTQDDV 76 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~---~-----~~~~~i~yv~Q~~~ 76 (583)
+++++|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|+++. + ..++.++|++|++.
T Consensus 9 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~ 86 (206)
T TIGR03608 9 GDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEK--FDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFA 86 (206)
T ss_pred CCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEccccchhhHHHHHHhCeeEEecchh
Confidence 35679999999999999999999999999999999999653 57899999998742 1 23567999999999
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEE
Q 007952 77 LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFL 156 (583)
Q Consensus 77 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illL 156 (583)
+++.+|++||+.+..... ....++..++++++++.+|+++..++. +.+||||||||++||++|+.+|++|+|
T Consensus 87 ~~~~~t~~e~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~lS~G~~qr~~laral~~~p~llll 158 (206)
T TIGR03608 87 LIENETVEENLDLGLKYK---KLSKKEKREKKKEALEKVGLNLKLKQK-----IYELSGGEQQRVALARAILKDPPLILA 158 (206)
T ss_pred hccCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCchhhhcCC-----hhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 999999999999865432 223445566789999999998766654 578999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEE
Q 007952 157 DEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL 206 (583)
Q Consensus 157 DEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L 206 (583)
||||+|||+.++..+.+.|++++++|+|||++||++. ..+.||++++|
T Consensus 159 DEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~--~~~~~d~i~~l 206 (206)
T TIGR03608 159 DEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE--VAKQADRVIEL 206 (206)
T ss_pred eCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHhhcCEEEeC
Confidence 9999999999999999999999877999999999975 34689999875
No 182
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-40 Score=339.73 Aligned_cols=210 Identities=22% Similarity=0.392 Sum_probs=172.4
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC---CCcccEEEECCccCCc------cccccEEEEccCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME---PTVGGSITYNDHPYSK------SLKSKIGFVTQDD 75 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~---~~~~G~I~~~g~~~~~------~~~~~i~yv~Q~~ 75 (583)
+++.+|+|+||+|++||+++|+||||||||||+++|+|.... .+++|+|.++|+++.. ..++.++|++|++
T Consensus 24 ~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 103 (269)
T PRK14259 24 GTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQP 103 (269)
T ss_pred CCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCC
Confidence 346799999999999999999999999999999999997531 1478999999987631 2456799999999
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 76 VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 76 ~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
.+++. ||+||+.+.+..+. ... +.+++++++++.+++....+.. -+..+.+||||||||++||++|+.+|++|+
T Consensus 104 ~l~~~-tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LS~G~~qrl~laral~~~p~lll 177 (269)
T PRK14259 104 NPFPK-SIYENIAFGARING---YTG-DMDELVERSLRKAAVWDECKDK-LNESGYSLSGGQQQRLCIARTIAIEPEVIL 177 (269)
T ss_pred ccchh-hHHHHHhhhhhhcC---CcH-HHHHHHHHHHHHhCCcchhhhh-hCCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 88884 99999998754321 122 2345677888888874311111 123567999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcC-----------CeEEEEcChhhHHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK-----------GSLLYFGKASEAMA 222 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~-----------G~iv~~G~~~~~~~ 222 (583)
|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+.||++++|++ |++++.|+++++..
T Consensus 178 LDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~~~~~~~~~g~~g~~~~~~~~~~~~~ 253 (269)
T PRK14259 178 MDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNMQ-QAVRVSDMTAFFNAEEVEGGSGGKVGYLVEFNETKKIFN 253 (269)
T ss_pred EcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEeccccccccccccceEEEeCCHHHHHh
Confidence 9999999999999999999999964 789999999975 57889999999996 67899999988753
No 183
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=1.2e-40 Score=357.32 Aligned_cols=212 Identities=28% Similarity=0.452 Sum_probs=185.4
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCC--cccEEEECCccCCc--------cccccEEEEccCC-
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT--VGGSITYNDHPYSK--------SLKSKIGFVTQDD- 75 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~--~~G~I~~~g~~~~~--------~~~~~i~yv~Q~~- 75 (583)
..+++||||++++||++||+|.|||||||+.++|.|.++.+. .+|+|.++|.++.. ...+.|+||+|++
T Consensus 22 ~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~ 101 (539)
T COG1123 22 VPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPM 101 (539)
T ss_pred eeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCch
Confidence 579999999999999999999999999999999999875432 58999999986531 1346799999996
Q ss_pred -CCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEE
Q 007952 76 -VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLL 154 (583)
Q Consensus 76 -~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~il 154 (583)
.+-|-+||.+.+.-....+. ..++++.++++.++++.+||++.... +.++++|||||||||.||+||+.+|++|
T Consensus 102 ~slnP~~tIg~Qi~E~~~~h~--~~~~~ea~~~a~elL~~Vgl~~~~~~---~~yPheLSGG~rQRv~iAmALa~~P~LL 176 (539)
T COG1123 102 TSLNPVMTIGDQIREALRLHG--KGSRAEARKRAVELLEQVGLPDPERR---DRYPHQLSGGMRQRVMIAMALALKPKLL 176 (539)
T ss_pred hhcCchhhHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHcCCCChhhh---ccCCcccCchHHHHHHHHHHHhCCCCEE
Confidence 57788999998876655443 23478888999999999999976554 5689999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHHHH
Q 007952 155 FLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYF 224 (583)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f 224 (583)
++||||++||+.++.+|+++|+++.+ .|.++|++|||+. -+.++||+|++|++|++++.|+++++++.+
T Consensus 177 IaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~-Vva~~aDrv~Vm~~G~iVE~G~~~~i~~~p 246 (539)
T COG1123 177 IADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLG-VVAELADRVVVMYKGEIVETGPTEEILSNP 246 (539)
T ss_pred EECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHH-HHHHhcCeEEEEECCEEEEecCHHHHHhcc
Confidence 99999999999999999999999985 5999999999975 578999999999999999999999987643
No 184
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.2e-41 Score=370.73 Aligned_cols=208 Identities=25% Similarity=0.390 Sum_probs=178.1
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-----cccccEEEEccCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-----SLKSKIGFVTQDDVLFP 79 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-----~~~~~i~yv~Q~~~~~~ 79 (583)
+++.+|+|+||++++||+++|+||||||||||+|+|+|... +++|+|.++|+++.. ..++.++||+|++.+++
T Consensus 16 ~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~ 93 (510)
T PRK09700 16 GPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHE--PTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVID 93 (510)
T ss_pred CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcC--CCccEEEECCEECCCCCHHHHHHCCeEEEeecccccC
Confidence 45679999999999999999999999999999999999653 578999999987643 12356999999999999
Q ss_pred CCCHHHHHHHHHHcCC-CCC---CCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 80 HLTVKETLTYAALLRL-PNT---LTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~-~~~---~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
.+||+||+.++..... ... .+.++.+++++++++.+||.+..++. +.+|||||||||+||++|+.+|++|+
T Consensus 94 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgG~~qrv~ia~al~~~p~lll 168 (510)
T PRK09700 94 ELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEK-----VANLSISHKQMLEIAKTLMLDAKVII 168 (510)
T ss_pred CCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccc-----hhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999987532100 001 12344556789999999998766654 57999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 220 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 220 (583)
|||||+|||+.++..+++.|++++++|+|||++||++. .+.+.||++++|++|++++.|++++.
T Consensus 169 LDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~ 232 (510)
T PRK09700 169 MDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLA-EIRRICDRYTVMKDGSSVCSGMVSDV 232 (510)
T ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEeeecchhhC
Confidence 99999999999999999999999888999999999965 57789999999999999999998764
No 185
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-40 Score=338.60 Aligned_cols=211 Identities=25% Similarity=0.403 Sum_probs=174.9
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCC---CcccEEEECCccCCc------cccccEEEEccCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPYSK------SLKSKIGFVTQDD 75 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~---~~~G~I~~~g~~~~~------~~~~~i~yv~Q~~ 75 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|....+ +.+|+|.++|.++.. ..++.++|++|++
T Consensus 36 ~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~ 115 (272)
T PRK14236 36 GDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRP 115 (272)
T ss_pred CCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCC
Confidence 3467999999999999999999999999999999999975421 478999999987642 2467899999999
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 76 VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 76 ~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
.+++. |++||+.+..... ....+++.+++++++++.+++.+...+.. +..+.+||||||||++||++|+.+|++++
T Consensus 116 ~l~~~-tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~Gq~qrv~laral~~~p~lll 191 (272)
T PRK14236 116 NPFPK-SIYENVVYGLRLQ--GINNRRVLDEAVERSLRGAALWDEVKDRL-HENAFGLSGGQQQRLVIARAIAIEPEVLL 191 (272)
T ss_pred ccCcc-cHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHcCCChhHHHHh-hCCcccCCHHHHHHHHHHHHHHCCCCEEE
Confidence 98886 9999998865432 11123334566888899999864211111 23467999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|||||+|||+.++..+.+.|+++++ +.|||++||++. ++.+.||++++|++|+++..|++++..
T Consensus 192 LDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 255 (272)
T PRK14236 192 LDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQ-QAARVSDYTAFMYMGKLVEYGDTDTLF 255 (272)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHH-HHHhhCCEEEEEECCEEEecCCHHHHh
Confidence 9999999999999999999999976 789999999975 477889999999999999999988753
No 186
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=6.4e-41 Score=304.81 Aligned_cols=197 Identities=33% Similarity=0.516 Sum_probs=173.7
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-------c-ccccEEEEccCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-------S-LKSKIGFVTQDDV 76 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-------~-~~~~i~yv~Q~~~ 76 (583)
++..||++|++.+++||-++|+|||||||||||-+++|+.. +++|+|.+.|+++.+ . ..+.+|+|+|...
T Consensus 21 ~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~--~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~ 98 (228)
T COG4181 21 GELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDD--PSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFH 98 (228)
T ss_pred cceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCC--CCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeee
Confidence 45689999999999999999999999999999999999643 679999999998742 1 2467999999999
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEE
Q 007952 77 LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFL 156 (583)
Q Consensus 77 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illL 156 (583)
+.|+||..||+...+.++.. +..+..+.+.+.|+.+||.+..+. ++.+|||||+|||+||||++..|++||.
T Consensus 99 Lip~ltAlENV~lPleL~ge---~~~~~~~~A~~lL~~vGLg~Rl~H-----yP~qLSGGEQQRVAiARAfa~~P~vLfA 170 (228)
T COG4181 99 LIPNLTALENVALPLELRGE---SSADSRAGAKALLEAVGLGKRLTH-----YPAQLSGGEQQRVALARAFAGRPDVLFA 170 (228)
T ss_pred ccccchhhhhccchhhhcCC---ccccHHHHHHHHHHHhCccccccc-----CccccCchHHHHHHHHHHhcCCCCEEec
Confidence 99999999999998877642 233455668889999999876654 5789999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhhcCeEEEEcCCeEEE
Q 007952 157 DEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 213 (583)
Q Consensus 157 DEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~ 213 (583)
||||-+||..+..+|.++|-.+.+ .|.|.+++||||. +..-|||.+-|.+|+++.
T Consensus 171 DEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~--LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 171 DEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQ--LAARCDRQLRLRSGRLVE 226 (228)
T ss_pred cCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHH--HHHhhhheeeeecceecc
Confidence 999999999999999999999865 5999999999985 567899999999999874
No 187
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-40 Score=337.34 Aligned_cols=211 Identities=25% Similarity=0.401 Sum_probs=172.8
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCC-CC--CcccEEEECCccCCc------cccccEEEEccCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLM-EP--TVGGSITYNDHPYSK------SLKSKIGFVTQDD 75 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~-~~--~~~G~I~~~g~~~~~------~~~~~i~yv~Q~~ 75 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|... .+ +++|+|.++|+++.. ..++.++|++|++
T Consensus 32 ~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 111 (268)
T PRK14248 32 GEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKP 111 (268)
T ss_pred CCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEecCC
Confidence 45679999999999999999999999999999999999642 12 478999999987642 2356799999999
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 76 VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 76 ~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
.+++. |++||+.+...... .......++.+.+.++.+++.+..... -+..+.+||||||||++||++|+.+|++|+
T Consensus 112 ~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LSgGq~qrl~laral~~~p~lll 187 (268)
T PRK14248 112 NPFPK-SIYNNITHALKYAG--ERRKSVLDEIVEESLTKAALWDEVKDR-LHSSALSLSGGQQQRLCIARTLAMKPAVLL 187 (268)
T ss_pred ccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCCcchHHH-HhcCcccCCHHHHHHHHHHHHHhCCCCEEE
Confidence 88885 99999987643221 112233345677888888885311111 123567999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+.||++++|++|++++.|++++..
T Consensus 188 LDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~~ 251 (268)
T PRK14248 188 LDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQ-QALRVSDRTAFFLNGDLVEYDQTEQIF 251 (268)
T ss_pred EcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999965 689999999975 477899999999999999999988763
No 188
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=2.4e-40 Score=333.26 Aligned_cols=200 Identities=29% Similarity=0.461 Sum_probs=173.0
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCCCH
Q 007952 8 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLTV 83 (583)
Q Consensus 8 ~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~lTv 83 (583)
.+|+|+|+++++||+++|+||||||||||+++|+|.. ++ +|+|.++|+++.+ ..++.++|++|++.+++.+|+
T Consensus 10 ~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~--~~-~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv 86 (248)
T PRK03695 10 TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLL--PG-SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPV 86 (248)
T ss_pred ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCC--CC-CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccH
Confidence 3799999999999999999999999999999999965 33 8999999987642 234569999999888888999
Q ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHh-------CCCEEEE
Q 007952 84 KETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIII-------NPSLLFL 156 (583)
Q Consensus 84 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~-------~p~illL 156 (583)
+||+.+.... ..+.++..++++++++.+||.+..++ .++.||||||||++||++|+. +|++|+|
T Consensus 87 ~~nl~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llll 157 (248)
T PRK03695 87 FQYLTLHQPD----KTRTEAVASALNEVAEALGLDDKLGR-----SVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLL 157 (248)
T ss_pred HHHHHhcCcc----CCCcHHHHHHHHHHHHHcCCHhHhcC-----CcccCCHHHHHHHHHHHHHhccccccCCCCCEEEE
Confidence 9999875321 12233445678999999999876655 357999999999999999998 6799999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhH
Q 007952 157 DEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 220 (583)
Q Consensus 157 DEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 220 (583)
||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.||++++|++|++++.|++++.
T Consensus 158 DEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 220 (248)
T PRK03695 158 DEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLN-HTLRHADRVWLLKQGKLLASGRRDEV 220 (248)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999878999999999965 47789999999999999999998765
No 189
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-40 Score=332.91 Aligned_cols=210 Identities=22% Similarity=0.395 Sum_probs=173.0
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCC----cccEEEECCccCCc------cccccEEEEccC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT----VGGSITYNDHPYSK------SLKSKIGFVTQD 74 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~----~~G~I~~~g~~~~~------~~~~~i~yv~Q~ 74 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|... +. .+|+|.++|.++.. ..++.++|++|+
T Consensus 15 ~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~-~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~ 93 (251)
T PRK14249 15 HKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMND-IVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQ 93 (251)
T ss_pred CCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC-ccccCCcccEEEECCEEccccccChHHhhceEEEEecC
Confidence 34679999999999999999999999999999999999753 22 26999999987632 246779999999
Q ss_pred CCCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEE
Q 007952 75 DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLL 154 (583)
Q Consensus 75 ~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~il 154 (583)
+.+++. |++||+.+....+.. ..+++..+++++.++.+++.+..... .+..+.+||||||||++|||+|+.+|+++
T Consensus 94 ~~~~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LS~Gq~qrv~laral~~~p~ll 169 (251)
T PRK14249 94 PNPFPK-SIFDNVAFGPRMLGT--TAQSRLDEVVEKSLRQAALWDEVKDN-LHKSGLALSGGQQQRLCIARVLAIEPEVI 169 (251)
T ss_pred CccCcC-cHHHHHhhHHHhcCC--ChhhHHHHHHHHHHHHhCCchhhhhH-hhCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 998885 999999987543211 11233445677788888875322111 13457899999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 155 FLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
+|||||+|||+.++..+.+.|++++ +++|||++||++. ++.+.||++++|++|++++.|++++..
T Consensus 170 lLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14249 170 LMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQ-QAARASDWTGFLLTGDLVEYGRTGEIF 234 (251)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHhhCCEEEEEeCCeEEEeCCHHHHH
Confidence 9999999999999999999999985 5899999999965 577889999999999999999988763
No 190
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-40 Score=333.57 Aligned_cols=211 Identities=25% Similarity=0.423 Sum_probs=173.4
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC-C--CcccEEEECCccCCc------cccccEEEEccCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYSK------SLKSKIGFVTQDD 75 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~-~--~~~G~I~~~g~~~~~------~~~~~i~yv~Q~~ 75 (583)
+.+.+|+|+|+++++||+++|+||||||||||+++|+|...+ | +.+|+|.++|+++.. ..++.++|++|++
T Consensus 15 ~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~ 94 (251)
T PRK14251 15 GNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQP 94 (251)
T ss_pred CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCC
Confidence 356799999999999999999999999999999999997632 2 368999999987631 2456799999999
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 76 VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 76 ~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
.+++ .||+||+.+....+. ....+..+++++++++.+++....... -+..+.+||||||||++||++|+.+|++++
T Consensus 95 ~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LS~Gq~qr~~laral~~~p~lll 170 (251)
T PRK14251 95 TPFP-FSVYDNVAYGLKIAG--VKDKELIDQRVEESLKQAAIWKETKDN-LDRNAQAFSGGQQQRICIARALAVRPKVVL 170 (251)
T ss_pred ccCC-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCcchHHH-hccChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 8886 799999987643221 112333446678899999985311100 123567999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+.||++++|++|+++..|++++..
T Consensus 171 lDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14251 171 LDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNLQ-QAGRISDQTAFLMNGDLIEAGPTEEMF 234 (251)
T ss_pred ecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCHH-HHHhhcCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999864 789999999975 477889999999999999999988763
No 191
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.9e-40 Score=323.73 Aligned_cols=180 Identities=40% Similarity=0.709 Sum_probs=155.2
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCC-CcccEEEECCccCCc---cccccEEEEccCCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYSK---SLKSKIGFVTQDDVLFPH 80 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~-~~~G~I~~~g~~~~~---~~~~~i~yv~Q~~~~~~~ 80 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|...+. +.+|+|.++|+++.. ..++.++|++|++.+++.
T Consensus 18 ~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~ 97 (202)
T cd03233 18 SKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPT 97 (202)
T ss_pred CCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCC
Confidence 4678999999999999999999999999999999999975321 578999999988643 346779999999999999
Q ss_pred CCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCC
Q 007952 81 LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPT 160 (583)
Q Consensus 81 lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPt 160 (583)
+||+||+.+..... .+ ..+..||||||||++||++|+.+|++++|||||
T Consensus 98 ~tv~~~l~~~~~~~--------------------------~~-----~~~~~LS~Ge~qrl~laral~~~p~llllDEPt 146 (202)
T cd03233 98 LTVRETLDFALRCK--------------------------GN-----EFVRGISGGERKRVSIAEALVSRASVLCWDNST 146 (202)
T ss_pred CcHHHHHhhhhhhc--------------------------cc-----cchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCC
Confidence 99999998753210 12 245689999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEc
Q 007952 161 SGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 215 (583)
Q Consensus 161 sgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 215 (583)
+|||+.++..+.+.|++++++ +.|+|+++|+...++.+.||++++|++|++++.|
T Consensus 147 ~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 147 RGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred ccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 999999999999999999875 6777777766555678899999999999998765
No 192
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=5.1e-41 Score=335.79 Aligned_cols=201 Identities=32% Similarity=0.552 Sum_probs=162.8
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~l 81 (583)
.+.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|.++.. ..++.++|++|++.+++ .
T Consensus 14 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~ 90 (237)
T cd03252 14 GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYV--PENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFN-R 90 (237)
T ss_pred CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhcc-c
Confidence 3579999999999999999999999999999999999753 578999999987632 24567999999988775 6
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHH-----HHHHHHHHc--CCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEE
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEK-----RAIDVINEL--GLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLL 154 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~-----~v~~~l~~l--gL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~il 154 (583)
||+||+.+... ........+ ...+.++.+ ++.+..+ ..+.+|||||||||+||++|+.+|+++
T Consensus 91 tv~~nl~~~~~-----~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-----~~~~~LSgG~~qrv~laral~~~p~ll 160 (237)
T cd03252 91 SIRDNIALADP-----GMSMERVIEAAKLAGAHDFISELPEGYDTIVG-----EQGAGLSGGQRQRIAIARALIHNPRIL 160 (237)
T ss_pred hHHHHhhccCC-----CCCHHHHHHHHHHcCcHHHHHhCcccccchhh-----cCCCcCCHHHHHHHHHHHHHhhCCCEE
Confidence 99999976421 111111111 123344444 3333222 346799999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 155 FLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
+|||||+|||+.++..+.+.|+++++ |+|||++||++.. + +.||++++|++|++++.|++++..+
T Consensus 161 llDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~-~-~~~d~v~~l~~G~i~~~~~~~~~~~ 225 (237)
T cd03252 161 IFDEATSALDYESEHAIMRNMHDICA-GRTVIIIAHRLST-V-KNADRIIVMEKGRIVEQGSHDELLA 225 (237)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHHH-H-HhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999974 8999999999864 5 5699999999999999999887643
No 193
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=2e-40 Score=327.83 Aligned_cols=194 Identities=32% Similarity=0.558 Sum_probs=169.6
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-------cccccEEEEccCCCCCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-------SLKSKIGFVTQDDVLFP 79 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-------~~~~~i~yv~Q~~~~~~ 79 (583)
+.+|+|+||++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++.. ..++.++|++|++.+++
T Consensus 18 ~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~--~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (220)
T TIGR02982 18 KQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLR--SVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLG 95 (220)
T ss_pred eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcC
Confidence 67999999999999999999999999999999999965 3679999999987642 23567999999999999
Q ss_pred CCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCC
Q 007952 80 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEP 159 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEP 159 (583)
.+|+.||+.+...... ..+.++..++++++++.+||.+..++. +++||||||||++||++|+.+|++++||||
T Consensus 96 ~~t~~~n~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~lS~G~~qrv~laral~~~p~illlDEP 168 (220)
T TIGR02982 96 FLTARQNVQMALELQP--NLSYQEARERARAMLEAVGLGDHLDYY-----PHNLSGGQKQRVAIARALVHRPKLVLADEP 168 (220)
T ss_pred CCCHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCChhhhhcC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 9999999998754321 134455667789999999998766653 579999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhhcCeEEEEcCCeE
Q 007952 160 TSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 211 (583)
Q Consensus 160 tsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~i 211 (583)
|+|||+.++..+.+.|+++++ .|+|||++||++. +.+.||++++|++|++
T Consensus 169 ~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 169 TAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADRIVHMEDGKL 219 (220)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCEEEEEECCEE
Confidence 999999999999999999986 4899999999974 4589999999999986
No 194
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-40 Score=336.73 Aligned_cols=211 Identities=24% Similarity=0.404 Sum_probs=176.3
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCC---CcccEEEECCccCCc-----cccccEEEEccCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPYSK-----SLKSKIGFVTQDDV 76 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~---~~~G~I~~~g~~~~~-----~~~~~i~yv~Q~~~ 76 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|...+. +.+|+|.++|.++.. ..++.++|++|++.
T Consensus 32 ~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~ 111 (276)
T PRK14271 32 AGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPN 111 (276)
T ss_pred CCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCc
Confidence 4568999999999999999999999999999999999975421 368999999987642 24677999999998
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEE
Q 007952 77 LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFL 156 (583)
Q Consensus 77 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illL 156 (583)
+++ .|++||+.+..... ...+.++..+++.++++.+++.+..++.. +..+.+||||||||++|||+|+.+|++++|
T Consensus 112 l~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~l-~~~~~~LSgGq~qrl~LAral~~~p~lllL 187 (276)
T PRK14271 112 PFP-MSIMDNVLAGVRAH--KLVPRKEFRGVAQARLTEVGLWDAVKDRL-SDSPFRLSGGQQQLLCLARTLAVNPEVLLL 187 (276)
T ss_pred cCC-ccHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHcCCCchhhhHh-hCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 888 79999998764321 11234455556788899999975322211 234679999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 157 DEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 157 DEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.||++++|++|+++..|+++++.
T Consensus 188 DEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~dri~~l~~G~i~~~g~~~~~~ 250 (276)
T PRK14271 188 DEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLA-QAARISDRAALFFDGRLVEEGPTEQLF 250 (276)
T ss_pred cCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999976 589999999965 577899999999999999999988764
No 195
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-40 Score=334.92 Aligned_cols=211 Identities=22% Similarity=0.423 Sum_probs=174.4
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCC-C--cccEEEECCccCCc------cccccEEEEccCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-T--VGGSITYNDHPYSK------SLKSKIGFVTQDD 75 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~-~--~~G~I~~~g~~~~~------~~~~~i~yv~Q~~ 75 (583)
+++.+|+|+|+++++||+++|+|+||||||||+|+|+|..... + ++|+|.++|+++.. ..++.++|++|++
T Consensus 18 ~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 97 (259)
T PRK14260 18 NTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRP 97 (259)
T ss_pred CCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEeccc
Confidence 3467999999999999999999999999999999999975421 2 48999999987632 2456799999999
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 76 VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 76 ~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
.+++ +||+||+.+....+. ..++.+..++++++++.+|+.+..... .+..+..||||||||++||++|+.+|++++
T Consensus 98 ~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LS~G~~qrv~laral~~~p~lll 173 (259)
T PRK14260 98 NPFP-MSIYENVAYGVRISA--KLPQADLDEIVESALKGAALWQEVKDK-LNKSALGLSGGQQQRLCIARALAIKPKVLL 173 (259)
T ss_pred ccCC-ccHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhhH-hcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9888 899999988654321 123344456678889999884311111 123567999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEc-----CCeEEEEcChhhHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG-----KGSLLYFGKASEAM 221 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~-----~G~iv~~G~~~~~~ 221 (583)
|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+.||++++|+ +|++++.|++++..
T Consensus 174 LDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~~ 242 (259)
T PRK14260 174 MDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQ-QATRVSDFTAFFSTDESRIGQMVEFGVTTQIF 242 (259)
T ss_pred EcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCeEEEEeccCCCCceEEEeCCHHHHh
Confidence 9999999999999999999999875 699999999975 5788999999998 59999999999863
No 196
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.9e-40 Score=332.69 Aligned_cols=211 Identities=28% Similarity=0.425 Sum_probs=173.9
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC-C--CcccEEEECCccCCc------cccccEEEEccCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYSK------SLKSKIGFVTQDD 75 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~-~--~~~G~I~~~g~~~~~------~~~~~i~yv~Q~~ 75 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|.... + +++|+|.++|+++.. ..++.++|++|++
T Consensus 17 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~ 96 (253)
T PRK14261 17 GEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRP 96 (253)
T ss_pred CCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCC
Confidence 456799999999999999999999999999999999996532 2 148999999987642 2356799999999
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 76 VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 76 ~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
.+++. ||+||+.+....+. .....+.++++.++++.+++.+...+. -+..+++||||||||++||++|+.+|++++
T Consensus 97 ~~~~~-tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LS~G~~qrv~laral~~~p~lll 172 (253)
T PRK14261 97 NPFPK-SIYENVAYGPRIHG--EKNKKTLDTIVEKSLKGAALWDEVKDR-LHDSALSLSGGQQQRLCIARTLAVNPEVIL 172 (253)
T ss_pred ccCcc-cHHHHHHhhHHhcC--CCCHHHHHHHHHHHHHHhcCchhhHHH-hhcChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 98885 99999998754321 112334456678889988885321111 123567999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+.+|++++|++|+++..|++++..
T Consensus 173 LDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14261 173 MDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQ-QAARVSDYTGFMYLGKLIEFDKTTQIF 236 (253)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHH-HHHhhCCEEEEEECCEEEEcCCHHHHH
Confidence 9999999999999999999999976 689999999965 477889999999999999999988763
No 197
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.5e-40 Score=344.16 Aligned_cols=209 Identities=22% Similarity=0.386 Sum_probs=175.5
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC---CCcccEEEECCccCCc------cccccEEEEccCCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME---PTVGGSITYNDHPYSK------SLKSKIGFVTQDDV 76 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~---~~~~G~I~~~g~~~~~------~~~~~i~yv~Q~~~ 76 (583)
.+.+|+|+|++|++||++||+||||||||||+++|+|.... .+.+|+|.++|+++.. ..++.++||||++.
T Consensus 94 ~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~ 173 (329)
T PRK14257 94 TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPT 173 (329)
T ss_pred CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCc
Confidence 45799999999999999999999999999999999996532 1468999999998752 35678999999999
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCCC-HHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 77 LFPHLTVKETLTYAALLRLPNTLT-KQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 77 ~~~~lTv~e~l~~~~~~~~~~~~~-~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
+++ .|++||+.|+.... ..+ .+..++.+.++++.++|.+..++.++ +.+..||||||||++|||||+.+|+||+
T Consensus 174 ~~~-~ti~eNi~~~~~~~---~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~-~~~~~LSgGqkqRl~LARAl~~~p~IlL 248 (329)
T PRK14257 174 PFE-MSIFDNVAYGPRNN---GINDRKILEKIVEKSLKSAALWDEVKDDLD-KAGNALSGGQQQRLCIARAIALEPEVLL 248 (329)
T ss_pred cCC-CcHHHHHHhHHHhc---CCChHHHHHHHHHHHHHHcCCcchhhhhhh-CCcccCCHHHHHHHHHHHHHHhCCCEEE
Confidence 886 79999999864321 122 22334557788899888543333333 4578999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|||||+|||+.+...+.+.|+++++ ++|||++||++. .+.+.||+|++|++|++++.|+++++.
T Consensus 249 LDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~-~i~~~~Driivl~~G~i~e~g~~~~l~ 312 (329)
T PRK14257 249 MDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMA-QAQRISDETVFFYQGWIEEAGETKTIF 312 (329)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999876 699999999965 477789999999999999999999975
No 198
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.8e-40 Score=331.81 Aligned_cols=211 Identities=26% Similarity=0.415 Sum_probs=171.9
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC-C--CcccEEEECCccCCc------cccccEEEEccCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYSK------SLKSKIGFVTQDD 75 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~-~--~~~G~I~~~g~~~~~------~~~~~i~yv~Q~~ 75 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|.... + +.+|+|.++|+++.. ..++.++|++|++
T Consensus 16 ~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~ 95 (252)
T PRK14255 16 GKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQP 95 (252)
T ss_pred CCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCC
Confidence 346799999999999999999999999999999999996531 2 158999999987631 2456799999999
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 76 VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 76 ~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
.+++ .||+||+.+....+.. ...+..++++.+.++.+++....... -+..+.+||||||||++||++|+.+|++++
T Consensus 96 ~~~~-~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~i~~~-~~~~~~~LS~Gq~qrv~laral~~~p~lll 171 (252)
T PRK14255 96 NPFP-FSIYENVIYGLRLAGV--KDKAVLDEAVETSLKQAAIWDEVKDH-LHESALSLSGGQQQRVCIARVLAVKPDVIL 171 (252)
T ss_pred ccCC-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCccchhhH-HhcCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 8888 6999999986543211 12223345567788888774211111 123567999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|||||+|||+.++..+.+.|+++++ +.|||++||++. .+.+.||++++|++|+++..|++.+..
T Consensus 172 lDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14255 172 LDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMH-QASRISDKTAFFLTGNLIEFADTKQMF 235 (252)
T ss_pred EcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999976 589999999975 577889999999999999999988763
No 199
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-40 Score=338.80 Aligned_cols=210 Identities=24% Similarity=0.400 Sum_probs=172.6
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCC-CC--CcccEEEECCccCCc------cccccEEEEccCCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLM-EP--TVGGSITYNDHPYSK------SLKSKIGFVTQDDV 76 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~-~~--~~~G~I~~~g~~~~~------~~~~~i~yv~Q~~~ 76 (583)
++.+|+|+|+++++||+++|+||||||||||+++|+|... .+ +.+|+|.++|+++.. ..++.++|++|++.
T Consensus 51 ~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 130 (286)
T PRK14275 51 EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPN 130 (286)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCCC
Confidence 4579999999999999999999999999999999999642 13 378999999987632 24567999999998
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEE
Q 007952 77 LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFL 156 (583)
Q Consensus 77 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illL 156 (583)
+++. ||+||+.+....+. ..+....++++.++++.+|+.+..... -+..+..||||||||++||++|+.+|++|+|
T Consensus 131 l~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LSgGq~qrv~LAraL~~~p~lllL 206 (286)
T PRK14275 131 PFPK-SIFDNIAYGPRLHG--INDKKQLEEIVEKSLRKAALWDEVSDR-LDKNALGLSGGQQQRLCVARTLAVEPEILLL 206 (286)
T ss_pred CCcc-CHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHhCCccchhhH-hhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 8885 99999998654321 112333456678889988874211001 1234679999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 157 DEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 157 DEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.||++++|++|+++..|+++++.
T Consensus 207 DEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~-~~~~~~d~i~~L~~G~i~~~g~~~~~~ 269 (286)
T PRK14275 207 DEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQ-QASRVSDYTMFFYEGVLVEHAPTAQLF 269 (286)
T ss_pred eCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999875 689999999975 467889999999999999999988764
No 200
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-40 Score=334.12 Aligned_cols=209 Identities=21% Similarity=0.340 Sum_probs=174.9
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCC---CcccEEEECCccCCc------cccccEEEEccCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPYSK------SLKSKIGFVTQDD 75 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~---~~~G~I~~~g~~~~~------~~~~~i~yv~Q~~ 75 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|...+. +.+|+|.++|+++.. ..++.++|++|++
T Consensus 19 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 98 (261)
T PRK14263 19 GNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQP 98 (261)
T ss_pred CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCC
Confidence 4568999999999999999999999999999999999976421 268999999987632 2356799999999
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 76 VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 76 ~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
.++ .+|++||+.+....+. . ..+..++++++++.++|.+..+... +..++.||||||||++|||||+.+|++|+
T Consensus 99 ~~~-~~tv~enl~~~~~~~~---~-~~~~~~~~~~~l~~~~l~~~i~~~~-~~~~~~LS~G~~qrv~laral~~~p~lll 172 (261)
T PRK14263 99 NPF-SMSIFDNVAFGLRLNR---Y-KGDLGDRVKHALQGAALWDEVKDKL-KVSGLSLSGGQQQRLCIARAIATEPEVLL 172 (261)
T ss_pred ccc-cccHHHHHHHHHhhcC---c-hHHHHHHHHHHHHHcCCchhhhhhh-hCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 887 5899999998754321 1 2234567889999999865332222 23567999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEc--------CCeEEEEcChhhHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG--------KGSLLYFGKASEAM 221 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~--------~G~iv~~G~~~~~~ 221 (583)
|||||+|||+.++.++.+.|+++++ ++|||++||++. ++.+.||++++|+ +|++++.|++++..
T Consensus 173 lDEPtsgLD~~~~~~l~~~l~~~~~-~~tii~isH~~~-~i~~~~d~v~~l~~~~~~~~~~G~i~~~g~~~~~~ 244 (261)
T PRK14263 173 LDEPCSALDPIATRRVEELMVELKK-DYTIALVTHNMQ-QAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQIF 244 (261)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEecccccccCCceEEEeCCHHHHH
Confidence 9999999999999999999999964 799999999975 4778999999996 89999999988764
No 201
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.5e-41 Score=308.61 Aligned_cols=209 Identities=29% Similarity=0.491 Sum_probs=183.7
Q ss_pred CccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCC-----------------cccc
Q 007952 3 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-----------------KSLK 65 (583)
Q Consensus 3 ~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~-----------------~~~~ 65 (583)
..+...+|++||++.+.|+++.|+|.|||||||+|+||+-+. .|..|.|.+||+.+. ..+|
T Consensus 15 ~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE--~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~R 92 (256)
T COG4598 15 RYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLE--KPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLR 92 (256)
T ss_pred hcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhc--CCCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHH
Confidence 457788999999999999999999999999999999999533 367899999998652 0245
Q ss_pred ccEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHH
Q 007952 66 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGN 145 (583)
Q Consensus 66 ~~i~yv~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~ 145 (583)
.+.|+|+|+.++++.+||.||+.-+..--+ ..++.+..++++..|..+|+.+..+. ++..|||||+||++|||
T Consensus 93 s~L~mVFQ~FNLWsHmtvLeNViEaPvhVL--g~~k~ea~e~Ae~~L~kVGi~ek~~~-----YP~~LSGGQQQR~aIAR 165 (256)
T COG4598 93 TRLGMVFQHFNLWSHMTVLENVIEAPVHVL--GVSKAEAIERAEKYLAKVGIAEKADA-----YPAHLSGGQQQRVAIAR 165 (256)
T ss_pred HHhhHhhhhcchhHHHHHHHHHHhcchHhh--cCCHHHHHHHHHHHHHHhCchhhhhc-----CccccCchHHHHHHHHH
Confidence 678999999999999999999975432111 25678888899999999999987774 57899999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 146 EIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 146 ~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
||+.+|+++++|||||+|||+-.-++++.+++|+++|+|.+++||.... ..+...+|++|++|.+-+.|+|+++.
T Consensus 166 aLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~F-AR~Vss~v~fLh~G~iEE~G~P~qvf 240 (256)
T COG4598 166 ALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGF-ARDVSSHVIFLHQGKIEEEGPPEQVF 240 (256)
T ss_pred HHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhH-HHhhhhheEEeecceecccCChHHHh
Confidence 9999999999999999999999999999999999999999999999653 56788999999999999999999874
No 202
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=3.4e-40 Score=335.84 Aligned_cols=206 Identities=26% Similarity=0.466 Sum_probs=175.4
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-------cccccEEEEccCC--C
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-------SLKSKIGFVTQDD--V 76 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-------~~~~~i~yv~Q~~--~ 76 (583)
++.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. ..++.++|++|++ .
T Consensus 24 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 101 (268)
T PRK10419 24 HQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLES--PSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISA 101 (268)
T ss_pred ceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhc
Confidence 4689999999999999999999999999999999999653 579999999987642 2356799999997 4
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 77 LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 77 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
+++..|+.|++.+..... .....++..++++++++.+|+. +..++ .++.||||||||++||++|+.+|++|+
T Consensus 102 ~~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~~LS~Ge~qrl~laral~~~p~lll 174 (268)
T PRK10419 102 VNPRKTVREIIREPLRHL--LSLDKAERLARASEMLRAVDLDDSVLDK-----RPPQLSGGQLQRVCLARALAVEPKLLI 174 (268)
T ss_pred cCCCCCHHHHHHHHHHhh--ccCCHHHHHHHHHHHHHHcCCChhHhhC-----CCccCChHHHHHHHHHHHHhcCCCEEE
Confidence 677899999997653211 1123445556789999999996 34444 467899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|||||+|||+.++..+.+.|++++++ |+|||++||++. .+.++||++++|++|++++.|++++..
T Consensus 175 LDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~G~i~~~g~~~~~~ 240 (268)
T PRK10419 175 LDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLR-LVERFCQRVMVMDNGQIVETQPVGDKL 240 (268)
T ss_pred EeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHH-HHHHhCCEEEEEECCEEeeeCChhhcc
Confidence 99999999999999999999999875 899999999975 577789999999999999999988754
No 203
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.1e-41 Score=357.56 Aligned_cols=203 Identities=33% Similarity=0.535 Sum_probs=174.4
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCC
Q 007952 4 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFP 79 (583)
Q Consensus 4 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~ 79 (583)
++++++++|+|+++++|+.+||+|+||||||||+++|+|..+ +++|+|.+||.+..+ .++++++||+|++.+|+
T Consensus 331 ~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~--~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~ 408 (559)
T COG4988 331 PDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLA--PTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFA 408 (559)
T ss_pred CCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCC--CCCceEEECCccccccCHHHHHhHeeeeCCCCcccc
Confidence 344589999999999999999999999999999999999764 579999999988753 47899999999999998
Q ss_pred CCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCc------cccccccCccCcccChHHHHHHHHHHHHHhCCCE
Q 007952 80 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER------CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSL 153 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~------~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~i 153 (583)
. |++||+.++. + ..++ +.+.+++++.||.+ -.|+.+| +..++|||||+|||++||||+.++++
T Consensus 409 g-TireNi~l~~----~-~~s~----e~i~~al~~a~l~~~v~~p~GLdt~ig-e~G~~LSgGQ~QRlaLARAll~~~~l 477 (559)
T COG4988 409 G-TIRENILLAR----P-DASD----EEIIAALDQAGLLEFVPKPDGLDTVIG-EGGAGLSGGQAQRLALARALLSPASL 477 (559)
T ss_pred c-cHHHHhhccC----C-cCCH----HHHHHHHHHhcHHHhhcCCCcccchhc-cCCCCCCHHHHHHHHHHHHhcCCCCE
Confidence 7 9999998852 1 1233 34556666666654 3456666 35688999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 154 LFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 154 llLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
+++||||++||.++...|++.|.++++ ++|++++||++.. ..-+|+|++|++|+++..|.++++.+
T Consensus 478 ~llDEpTA~LD~etE~~i~~~l~~l~~-~ktvl~itHrl~~--~~~~D~I~vld~G~l~~~g~~~~L~~ 543 (559)
T COG4988 478 LLLDEPTAHLDAETEQIILQALQELAK-QKTVLVITHRLED--AADADRIVVLDNGRLVEQGTHEELSE 543 (559)
T ss_pred EEecCCccCCCHhHHHHHHHHHHHHHh-CCeEEEEEcChHH--HhcCCEEEEecCCceeccCCHHHHhh
Confidence 999999999999999999999999987 5999999999753 56799999999999999999999853
No 204
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=7.1e-41 Score=377.12 Aligned_cols=201 Identities=27% Similarity=0.443 Sum_probs=170.4
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPH 80 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~ 80 (583)
+++++|+|+|+++++||.+||+||||||||||+++|+|.. | .+|+|.+||+++.+ .+|+.|+||+|++.+|+.
T Consensus 361 ~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~--p-~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~ 437 (588)
T PRK11174 361 DGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL--P-YQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHG 437 (588)
T ss_pred CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC--C-CCcEEEECCEecccCCHHHHHhheEEecCCCcCCCc
Confidence 4578999999999999999999999999999999999964 3 58999999998753 468899999999999986
Q ss_pred CCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCccCcccChHHHHHHHHHHHHHhCCCE
Q 007952 81 LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL-------ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSL 153 (583)
Q Consensus 81 lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~i 153 (583)
|++|||.++. | +.++++ ++++++..++ ++-.||.+|.. ...||||||||++|||||+++|++
T Consensus 438 -TI~eNI~~g~----~-~~~~ee----i~~al~~a~l~~~i~~lp~G~dT~vge~-G~~LSGGQrQRialARAll~~~~I 506 (588)
T PRK11174 438 -TLRDNVLLGN----P-DASDEQ----LQQALENAWVSEFLPLLPQGLDTPIGDQ-AAGLSVGQAQRLALARALLQPCQL 506 (588)
T ss_pred -CHHHHhhcCC----C-CCCHHH----HHHHHHHhCHHHHHHhcccccccccccC-CCCCCHHHHHHHHHHHHHhcCCCE
Confidence 9999998852 2 234433 3333443333 34457888753 578999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 154 LFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 154 llLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
|+||||||+||+.++..+.+.|+++. +++|+|+++|+++ ..+.||+|++|++|++++.|+.+++.+
T Consensus 507 liLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl~--~i~~aD~Iivl~~G~i~e~G~~~eL~~ 572 (588)
T PRK11174 507 LLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQLE--DLAQWDQIWVMQDGQIVQQGDYAELSQ 572 (588)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecChH--HHHhCCEEEEEeCCeEeecCCHHHHHh
Confidence 99999999999999999999999985 4899999999984 357799999999999999999998864
No 205
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=7e-40 Score=330.55 Aligned_cols=210 Identities=25% Similarity=0.346 Sum_probs=172.1
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccc-cEEEEccCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKS-KIGFVTQDDVLFP 79 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~-~i~yv~Q~~~~~~ 79 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|....++.+|+|.++|.++.+ ..++ .++|++|++.+++
T Consensus 18 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~q~~~~~~ 97 (252)
T CHL00131 18 NENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGIFLAFQYPIEIP 97 (252)
T ss_pred CCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeEEEEeccccccc
Confidence 3467999999999999999999999999999999999963224678999999987643 1222 4889999999999
Q ss_pred CCCHHHHHHHHHHcCCC----CCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCc-ccChHHHHHHHHHHHHHhCCCE
Q 007952 80 HLTVKETLTYAALLRLP----NTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVR-GVSGGERKRVCIGNEIIINPSL 153 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~----~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~-~LSgGerqRv~ia~~L~~~p~i 153 (583)
.+|+.|++.+....... ......+..+++.++++.+|+. +..++. +. +||||||||++||++|+.+|++
T Consensus 98 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~~LSgG~~qrv~la~al~~~p~l 172 (252)
T CHL00131 98 GVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRN-----VNEGFSGGEKKRNEILQMALLDSEL 172 (252)
T ss_pred cccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccc-----cccCCCHHHHHHHHHHHHHHcCCCE
Confidence 99999999875432110 0112223446678899999997 344443 34 5999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhh-cCeEEEEcCCeEEEEcChhhH
Q 007952 154 LFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHK-FDKLILLGKGSLLYFGKASEA 220 (583)
Q Consensus 154 llLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~-~D~v~~L~~G~iv~~G~~~~~ 220 (583)
++|||||+|||+.++..+.+.|++++++|+|||++||++.. +... +|++++|++|++++.|+++.+
T Consensus 173 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 239 (252)
T CHL00131 173 AILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRL-LDYIKPDYVHVMQNGKIIKTGDAELA 239 (252)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-HHhhhCCEEEEEeCCEEEEecChhhh
Confidence 99999999999999999999999998779999999999753 5455 899999999999999998844
No 206
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.8e-40 Score=335.26 Aligned_cols=210 Identities=24% Similarity=0.438 Sum_probs=171.2
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC-C--CcccEEEECCccCCc------cccccEEEEccCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYSK------SLKSKIGFVTQDD 75 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~-~--~~~G~I~~~g~~~~~------~~~~~i~yv~Q~~ 75 (583)
+++.+|+|+|+++++||+++|+|+||||||||+++|+|.... + +++|+|.++|+++.. ..++.++|++|++
T Consensus 35 ~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~ 114 (271)
T PRK14238 35 GEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKP 114 (271)
T ss_pred CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCC
Confidence 346799999999999999999999999999999999997531 2 478999999987631 2456799999999
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 76 VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 76 ~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
.+++. ||+||+.++...+. ..+.+..++.+.+.++.+++.+...... +..+.+||||||||++||++|+.+|++|+
T Consensus 115 ~~~~~-tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~~-~~~~~~LSgGe~qrv~laraL~~~p~lll 190 (271)
T PRK14238 115 NPFPK-SIYDNVTYGPKIHG--IKDKKTLDEIVEKSLRGAAIWDELKDRL-HDNAYGLSGGQQQRLCIARCLAIEPDVIL 190 (271)
T ss_pred ccccc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchHHHHH-hcCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 88874 99999998653321 1122233455677787776532111111 23567999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 220 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 220 (583)
|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.||++++|++|++++.|++++.
T Consensus 191 LDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~i~~~~d~i~~l~~G~i~~~g~~~~~ 253 (271)
T PRK14238 191 MDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQ-QAARISDKTAFFLNGYVNEYDDTDKI 253 (271)
T ss_pred EeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999976 799999999965 47789999999999999999998876
No 207
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.3e-41 Score=366.37 Aligned_cols=205 Identities=31% Similarity=0.563 Sum_probs=176.7
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCC
Q 007952 4 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFP 79 (583)
Q Consensus 4 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~ 79 (583)
..+.+||||+||+++|||++||+||||+||||+.++|-.. ++ |.+|+|.+||+|+.+ .+|++||+|.|||.+|.
T Consensus 478 Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rf-Y~-PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs 555 (716)
T KOG0058|consen 478 RPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRF-YD-PTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFS 555 (716)
T ss_pred CCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHh-cC-CCCCeEEECCeehhhcCHHHHHHHeeeeeccceeec
Confidence 3467899999999999999999999999999999999964 33 679999999999863 46899999999999998
Q ss_pred CCCHHHHHHHHHHcCCCCCCCHHHHHHH-----HHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEE
Q 007952 80 HLTVKETLTYAALLRLPNTLTKQQKEKR-----AIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLL 154 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~il 154 (583)
. ||+|||.|+.. +.+.++..+. +++.+. ++++-.||.+|. +..+||||||||++|||||++||.||
T Consensus 556 ~-sI~eNI~YG~~-----~~t~e~i~~AAk~ANah~FI~--~~p~gY~T~VGE-kG~qLSGGQKQRIAIARALlr~P~VL 626 (716)
T KOG0058|consen 556 G-SIRENIAYGLD-----NATDEEIEAAAKMANAHEFIT--NFPDGYNTVVGE-KGSQLSGGQKQRIAIARALLRNPRVL 626 (716)
T ss_pred c-cHHHHHhcCCC-----CCCHHHHHHHHHHhChHHHHH--hCccccccccCC-ccccccchHHHHHHHHHHHhcCCCEE
Confidence 6 99999999753 3344444332 334444 467778999984 46789999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 155 FLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
||||.||+||+++...+.+.|.++.+ ++|||++.|..+. .+.+|+|+++++|++++.|+.+|+++
T Consensus 627 ILDEATSALDaeSE~lVq~aL~~~~~-~rTVlvIAHRLST--V~~Ad~Ivvi~~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 627 ILDEATSALDAESEYLVQEALDRLMQ-GRTVLVIAHRLST--VRHADQIVVIDKGRVVEMGTHDELLS 691 (716)
T ss_pred EEechhhhcchhhHHHHHHHHHHhhc-CCeEEEEehhhhH--hhhccEEEEEcCCeEEecccHHHHhh
Confidence 99999999999999999999999875 6999999999764 57899999999999999999999864
No 208
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=2.9e-40 Score=365.53 Aligned_cols=201 Identities=24% Similarity=0.451 Sum_probs=176.2
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----c-ccccEEEEccCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----S-LKSKIGFVTQDDVLFP 79 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~-~~~~i~yv~Q~~~~~~ 79 (583)
+++.+|+|+|+++++||+++|+||||||||||||+|+|... +.+|+|.++|+++.. . .++.+||++|++.+++
T Consensus 22 ~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 99 (510)
T PRK15439 22 SGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVP--PDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFP 99 (510)
T ss_pred CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCC
Confidence 45679999999999999999999999999999999999753 678999999987642 1 2346999999999999
Q ss_pred CCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCC
Q 007952 80 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEP 159 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEP 159 (583)
.+||+||+.+... ...+.+++++++++.+||.+..++. +.+|||||||||+||++|+.+|++|+||||
T Consensus 100 ~~tv~e~l~~~~~-------~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~la~aL~~~p~lllLDEP 167 (510)
T PRK15439 100 NLSVKENILFGLP-------KRQASMQKMKQLLAALGCQLDLDSS-----AGSLEVADRQIVEILRGLMRDSRILILDEP 167 (510)
T ss_pred CCcHHHHhhcccc-------cchHHHHHHHHHHHHcCCCccccCC-----hhhCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 9999999987531 1123456788999999998766654 579999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhH
Q 007952 160 TSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 220 (583)
Q Consensus 160 tsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 220 (583)
|+|||+.++..+.+.|++++++|+|||++||++. ++.+.||++++|++|++++.|++++.
T Consensus 168 t~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (510)
T PRK15439 168 TASLTPAETERLFSRIRELLAQGVGIVFISHKLP-EIRQLADRISVMRDGTIALSGKTADL 227 (510)
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecChHHc
Confidence 9999999999999999999888999999999965 47789999999999999999998765
No 209
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-40 Score=363.94 Aligned_cols=208 Identities=21% Similarity=0.311 Sum_probs=177.8
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-----cccccEEEEccCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-----SLKSKIGFVTQDDVLFP 79 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-----~~~~~i~yv~Q~~~~~~ 79 (583)
+++.+|+|+|+++++||+++|+||||||||||+|+|+|... +.+|+|.++|+++.. ..++.++|++|++.+++
T Consensus 9 ~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 86 (491)
T PRK10982 9 PGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQ--KDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVL 86 (491)
T ss_pred CCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCceEEEECCEECCCCCHHHHHhCCEEEEeccccccc
Confidence 45679999999999999999999999999999999999653 578999999987642 23567999999998999
Q ss_pred CCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCC
Q 007952 80 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEP 159 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEP 159 (583)
.+||+||+.+..........+.++..++++++++.+|+.+..++. +.+|||||||||+||++|+.+|++|+||||
T Consensus 87 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGq~qrv~lA~al~~~p~lllLDEP 161 (491)
T PRK10982 87 QRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAK-----VATLSVSQMQMIEIAKAFSYNAKIVIMDEP 161 (491)
T ss_pred CCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCc-----hhhCCHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 999999998753211010113344456789999999998766653 579999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhH
Q 007952 160 TSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 220 (583)
Q Consensus 160 tsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 220 (583)
|+|||+.++..+.+.|++++++|+|||++||++. ++.+.||++++|++|+++..|++++.
T Consensus 162 t~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 221 (491)
T PRK10982 162 TSSLTEKEVNHLFTIIRKLKERGCGIVYISHKME-EIFQLCDEITILRDGQWIATQPLAGL 221 (491)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEeecChhhC
Confidence 9999999999999999999888999999999975 57789999999999999999997664
No 210
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.8e-40 Score=331.98 Aligned_cols=210 Identities=23% Similarity=0.418 Sum_probs=175.1
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCC----cccEEEECCccCCc------cccccEEEEccCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT----VGGSITYNDHPYSK------SLKSKIGFVTQDD 75 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~----~~G~I~~~g~~~~~------~~~~~i~yv~Q~~ 75 (583)
++.+|+|+|+++++||+++|+||||||||||+++|+|... +. .+|+|.++|+++.. ..++.++|++|+.
T Consensus 19 ~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~-~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~ 97 (261)
T PRK14258 19 TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNE-LESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKP 97 (261)
T ss_pred CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccC-CCCCccccceEEECCEEhhccccchHHhhccEEEEecCC
Confidence 4579999999999999999999999999999999999764 21 37999999987631 2356799999999
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 76 VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 76 ~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
.+++ +|++||+.+...... ..+..+..+++.++++.+++.+..+... +..+..||||||||++||++|+.+|++++
T Consensus 98 ~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgGq~qrv~laral~~~p~vll 173 (261)
T PRK14258 98 NLFP-MSVYDNVAYGVKIVG--WRPKLEIDDIVESALKDADLWDEIKHKI-HKSALDLSGGQQQRLCIARALAVKPKVLL 173 (261)
T ss_pred ccCc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchhhhHh-cCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 8888 899999988643221 1133344567888999999854222111 34567999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhhcCeEEEEcC-----CeEEEEcChhhHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGK-----GSLLYFGKASEAM 221 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~-----G~iv~~G~~~~~~ 221 (583)
|||||+|||+.++..+.+.|+++++ +|+|||++||++. ++.+.||++++|++ |++++.|+++++.
T Consensus 174 LDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~~ 244 (261)
T PRK14258 174 MDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLH-QVSRLSDFTAFFKGNENRIGQLVEFGLTKKIF 244 (261)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhcCEEEEEccCCCcCceEEEeCCHHHHH
Confidence 9999999999999999999999875 4899999999975 58889999999999 9999999999874
No 211
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=4.7e-41 Score=377.76 Aligned_cols=203 Identities=33% Similarity=0.541 Sum_probs=172.6
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~lT 82 (583)
..+|+|+|++|++||.+||+|+||||||||+|+|+|+.. |.+|+|.+||.++.+ .+|+++|||+||+.+|.. |
T Consensus 486 ~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~--p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~g-S 562 (709)
T COG2274 486 PPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYK--PQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSG-S 562 (709)
T ss_pred cchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcC-c
Confidence 479999999999999999999999999999999999764 678999999998753 578999999999999976 9
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHH-----HHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEe
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEKR-----AIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLD 157 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLD 157 (583)
++||+.++. |. .+.++..+. +++.++. +..-.+|.+| +...+||||||||++|||+|+++|+||+||
T Consensus 563 I~eNi~l~~----p~-~~~e~i~~A~~~ag~~~fI~~--lP~gy~t~v~-E~G~~LSGGQrQrlalARaLl~~P~ILlLD 634 (709)
T COG2274 563 IRENIALGN----PE-ATDEEIIEAAQLAGAHEFIEN--LPMGYDTPVG-EGGANLSGGQRQRLALARALLSKPKILLLD 634 (709)
T ss_pred HHHHHhcCC----CC-CCHHHHHHHHHHhCcHHHHHh--cccccccccc-cCCCCCCHHHHHHHHHHHHhccCCCEEEEe
Confidence 999998752 22 233332221 2333333 4455678776 456789999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHHH
Q 007952 158 EPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAY 223 (583)
Q Consensus 158 EPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~ 223 (583)
||||+||+.+...|.+.|.++.. |+|+|+++|+++ ..+.||+|++|++|+++.+|+.+|+++.
T Consensus 635 EaTSaLD~~sE~~I~~~L~~~~~-~~T~I~IaHRl~--ti~~adrIiVl~~Gkiv~~gs~~ell~~ 697 (709)
T COG2274 635 EATSALDPETEAIILQNLLQILQ-GRTVIIIAHRLS--TIRSADRIIVLDQGKIVEQGSHEELLAQ 697 (709)
T ss_pred CcccccCHhHHHHHHHHHHHHhc-CCeEEEEEccch--HhhhccEEEEccCCceeccCCHHHHHHh
Confidence 99999999999999999999864 799999999976 4688999999999999999999998764
No 212
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=4.6e-40 Score=363.53 Aligned_cols=210 Identities=27% Similarity=0.404 Sum_probs=177.0
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-----cccccEEEEccCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-----SLKSKIGFVTQDDVLFP 79 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-----~~~~~i~yv~Q~~~~~~ 79 (583)
+++.+|+|+|+++++||+++|+||||||||||+|+|+|...+.+.+|+|.++|+++.. ..++.++||+|++.+++
T Consensus 12 ~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 91 (500)
T TIGR02633 12 GGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVP 91 (500)
T ss_pred CCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCC
Confidence 4567999999999999999999999999999999999965321368999999987643 12457999999999999
Q ss_pred CCCHHHHHHHHHHcCCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeC
Q 007952 80 HLTVKETLTYAALLRLPN-TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 158 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDE 158 (583)
.+||+||+.+........ ....++..++++++++.+||.+..+. ..+.+|||||||||+||++|+.+|++|+|||
T Consensus 92 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----~~~~~LSgG~~qrv~iA~al~~~p~lllLDE 167 (500)
T TIGR02633 92 ELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVT----RPVGDYGGGQQQLVEIAKALNKQARLLILDE 167 (500)
T ss_pred CCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCccc----CchhhCCHHHHHHHHHHHHHhhCCCEEEEeC
Confidence 999999998864322111 12334455678999999999765421 2357999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhh
Q 007952 159 PTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 219 (583)
Q Consensus 159 PtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 219 (583)
||+|||+.++..+.+.|++++++|+|||++||++. ++.+.||++++|++|+++..|++++
T Consensus 168 Pt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (500)
T TIGR02633 168 PSSSLTEKETEILLDIIRDLKAHGVACVYISHKLN-EVKAVCDTICVIRDGQHVATKDMST 227 (500)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHHHhCCEEEEEeCCeEeeecCccc
Confidence 99999999999999999999888999999999965 5778999999999999999998764
No 213
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=8.2e-40 Score=330.55 Aligned_cols=205 Identities=21% Similarity=0.344 Sum_probs=171.2
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCC--CcccEEEECCccCCc-c-ccccEEEEccCCC--CCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP--TVGGSITYNDHPYSK-S-LKSKIGFVTQDDV--LFP 79 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~--~~~G~I~~~g~~~~~-~-~~~~i~yv~Q~~~--~~~ 79 (583)
++.+|+|+|+++++||+++|+||||||||||+++|+|...+. +++|+|.++|+++.. . .++.++||+|++. +.+
T Consensus 15 ~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~ 94 (254)
T PRK10418 15 AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNP 94 (254)
T ss_pred ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCc
Confidence 357999999999999999999999999999999999976410 178999999988743 1 2357999999974 456
Q ss_pred CCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCcc---ccccccCccCcccChHHHHHHHHHHHHHhCCCEEEE
Q 007952 80 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC---QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFL 156 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~---~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illL 156 (583)
.+|+.+++.+.+.... ... ..+++.++++.++|.+. .++ .+.+||||||||++||++|+.+|++|+|
T Consensus 95 ~~~~~~~~~~~~~~~~---~~~--~~~~~~~~l~~~~l~~~~~~~~~-----~~~~LS~Gq~qrv~laral~~~p~lLlL 164 (254)
T PRK10418 95 LHTMHTHARETCLALG---KPA--DDATLTAALEAVGLENAARVLKL-----YPFEMSGGMLQRMMIALALLCEAPFIIA 164 (254)
T ss_pred cccHHHHHHHHHHHcC---CCh--HHHHHHHHHHHcCCCChhhhhhc-----CCcccCHHHHHHHHHHHHHhcCCCEEEE
Confidence 6899999876543211 112 23568899999999762 233 4679999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 157 DEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 157 DEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|++++.|+++++.
T Consensus 165 DEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~~ 229 (254)
T PRK10418 165 DEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMG-VVARLADDVAVMSHGRIVEQGDVETLF 229 (254)
T ss_pred eCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999999999764 899999999975 467889999999999999999988764
No 214
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2e-41 Score=314.87 Aligned_cols=209 Identities=27% Similarity=0.475 Sum_probs=186.6
Q ss_pred CccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCC----ccccccEEEEccCCCCC
Q 007952 3 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSLKSKIGFVTQDDVLF 78 (583)
Q Consensus 3 ~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~----~~~~~~i~yv~Q~~~~~ 78 (583)
+.+++.+|+|+|.++++|.+++++|||||||||||.+++.++ +.++|+|+++|.++. +++.++++.+-|+..+-
T Consensus 10 ~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~--~~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~ 87 (252)
T COG4604 10 SYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLL--KKDSGEITIDGLELTSTPSKELAKKLSILKQENHIN 87 (252)
T ss_pred hhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhc--cccCceEEEeeeecccCChHHHHHHHHHHHhhchhh
Confidence 457889999999999999999999999999999999999754 367999999999875 35678899999999999
Q ss_pred CCCCHHHHHHHHHHcCCCC--CCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEE
Q 007952 79 PHLTVKETLTYAALLRLPN--TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFL 156 (583)
Q Consensus 79 ~~lTv~e~l~~~~~~~~~~--~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illL 156 (583)
..+||+|-+.|+ |.|. ....++.+..+++.++.++|++..|.. ..+||||||||..||+.++++.+.++|
T Consensus 88 ~rlTV~dLv~FG---RfPYSqGRlt~eD~~~I~~aieyl~L~~l~dry-----Ld~LSGGQrQRAfIAMVlaQdTdyvlL 159 (252)
T COG4604 88 SRLTVRDLVGFG---RFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRY-----LDELSGGQRQRAFIAMVLAQDTDYVLL 159 (252)
T ss_pred heeEHHHHhhcC---CCcccCCCCchHHHHHHHHHHHHhcccchHHHh-----HHhcccchhhhhhhheeeeccCcEEEe
Confidence 999999999997 3342 234567778899999999999988864 569999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 157 DEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 157 DEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
|||.++||...+.++|+.|++++++ |+||+++.||.+. ...++|+|+-|++|+++..|+++++.+
T Consensus 160 DEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINf-AS~YsD~IVAlK~G~vv~~G~~~eii~ 225 (252)
T COG4604 160 DEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINF-ASCYSDHIVALKNGKVVKQGSPDEIIQ 225 (252)
T ss_pred cCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccH-HHhhhhheeeecCCEEEecCCHHHhcC
Confidence 9999999999999999999999976 9999999999875 456899999999999999999999753
No 215
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=1.1e-39 Score=328.42 Aligned_cols=217 Identities=28% Similarity=0.348 Sum_probs=172.9
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----c-ccccEEEEccCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----S-LKSKIGFVTQDDVLFP 79 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~-~~~~i~yv~Q~~~~~~ 79 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|....++.+|+|.++|+++.. . .++.++|++|++.+++
T Consensus 12 ~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~ 91 (248)
T PRK09580 12 EDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIP 91 (248)
T ss_pred CCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEEEecCchhcc
Confidence 3567999999999999999999999999999999999974223578999999987642 1 2356999999999898
Q ss_pred CCCHHHHHHHHHH-cCC--C-CCCCHHHHHHHHHHHHHHcCCC-ccccccccCccC-cccChHHHHHHHHHHHHHhCCCE
Q 007952 80 HLTVKETLTYAAL-LRL--P-NTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFV-RGVSGGERKRVCIGNEIIINPSL 153 (583)
Q Consensus 80 ~lTv~e~l~~~~~-~~~--~-~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~-~~LSgGerqRv~ia~~L~~~p~i 153 (583)
.+|+.+++.+... .+. . ......+..+++++.++.+++. +..++. + ++||||||||++||++|+.+|++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~~LS~G~~qrv~laral~~~p~i 166 (248)
T PRK09580 92 GVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRS-----VNVGFSGGEKKRNDILQMAVLEPEL 166 (248)
T ss_pred chhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccC-----CCCCCCHHHHHHHHHHHHHHcCCCE
Confidence 8888777654321 110 0 0112223456778899999995 333332 3 37999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhh-cCeEEEEcCCeEEEEcChhhHHHHHHhcC
Q 007952 154 LFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHK-FDKLILLGKGSLLYFGKASEAMAYFSSIG 228 (583)
Q Consensus 154 llLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~-~D~v~~L~~G~iv~~G~~~~~~~~f~~~g 228 (583)
|+|||||+|||+.++..+.+.|++++++|+|||++||++. .+... +|++++|++|++++.|+++.+ +.++..+
T Consensus 167 llLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~-~~~~~~~d~i~~l~~g~i~~~g~~~~~-~~~~~~~ 240 (248)
T PRK09580 167 CILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHVLYQGRIVKSGDFTLV-KQLEEQG 240 (248)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHhhhCCEEEEEECCeEEEeCCHHHH-HHHHhcC
Confidence 9999999999999999999999999887899999999965 35555 899999999999999998855 3444433
No 216
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-40 Score=332.21 Aligned_cols=200 Identities=33% Similarity=0.514 Sum_probs=164.3
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~lT 82 (583)
+.+++|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|+++.+ ..++.++|++|++.+++ .|
T Consensus 15 ~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~t 91 (234)
T cd03251 15 PPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYD--VDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFN-DT 91 (234)
T ss_pred ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcccc--CCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeecc-cc
Confidence 379999999999999999999999999999999999753 679999999987642 24567999999998887 69
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHH-----HHHHHHHHc--CCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEK-----RAIDVINEL--GLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~-----~v~~~l~~l--gL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
|+||+.+.... ...++..+ .+++.++.+ ++.+..+ ..+..||||||||++||++|+.+|++++
T Consensus 92 v~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-----~~~~~LS~G~~qrv~la~al~~~p~lll 161 (234)
T cd03251 92 VAENIAYGRPG-----ATREEVEEAARAANAHEFIMELPEGYDTVIG-----ERGVKLSGGQRQRIAIARALLKDPPILI 161 (234)
T ss_pred HHHHhhccCCC-----CCHHHHHHHHHHcCcHHHHHhcccCcceeec-----cCCCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999875321 11211111 234555555 5544333 3467999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
|||||+|||+.++..+.+.|+++++ |+|||++||++.. +. .||++++|++|+++..|++++..+
T Consensus 162 LDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~-~~-~~d~v~~l~~G~i~~~~~~~~~~~ 225 (234)
T cd03251 162 LDEATSALDTESERLVQAALERLMK-NRTTFVIAHRLST-IE-NADRIVVLEDGKIVERGTHEELLA 225 (234)
T ss_pred EeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEecCHHH-Hh-hCCEEEEecCCeEeeeCCHHHHHH
Confidence 9999999999999999999999964 8999999999754 54 499999999999999999887644
No 217
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.7e-40 Score=335.91 Aligned_cols=209 Identities=25% Similarity=0.441 Sum_probs=172.1
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC---CCcccEEEECCccCCc------cccccEEEEccCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME---PTVGGSITYNDHPYSK------SLKSKIGFVTQDD 75 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~---~~~~G~I~~~g~~~~~------~~~~~i~yv~Q~~ 75 (583)
+++.+|+|+||+|++||+++|+||||||||||+++|+|.... .+.+|+|.++|.++.. ..++.++|++|++
T Consensus 50 ~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~ 129 (285)
T PRK14254 50 GDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKP 129 (285)
T ss_pred CCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEecCC
Confidence 346799999999999999999999999999999999997542 1478999999987631 3467899999999
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 76 VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 76 ~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
.+++. ||+||+.+....+. .+. +..++++++++.+|+.+...... +..+.+||||||||++||++|+.+|++|+
T Consensus 130 ~l~~~-tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~i~~~~-~~~~~~LSgGe~qrv~LAraL~~~p~lLL 203 (285)
T PRK14254 130 NPFPK-SIYDNVAYGLKIQG---YDG-DIDERVEESLRRAALWDEVKDQL-DSSGLDLSGGQQQRLCIARAIAPDPEVIL 203 (285)
T ss_pred ccCcC-CHHHHHHHHHHHcC---CcH-HHHHHHHHHHHHcCCCchhHHHH-hCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 88885 99999988654321 122 34567889999999853111111 23467999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEE-EEcCCeEEEEcChhhHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLI-LLGKGSLLYFGKASEAM 221 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~-~L~~G~iv~~G~~~~~~ 221 (583)
|||||+|||+.++..+.+.|+++++ +.|||++||++. .+.++||+++ +|++|+++..|++++..
T Consensus 204 LDEPts~LD~~~~~~l~~~L~~~~~-~~tiii~tH~~~-~i~~~~dri~v~l~~G~i~~~g~~~~~~ 268 (285)
T PRK14254 204 MDEPASALDPVATSKIEDLIEELAE-EYTVVIVTHNMQ-QAARISDKTAVFLTGGELVEFDDTDKIF 268 (285)
T ss_pred EeCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHhhcCEEEEEeeCCEEEEeCCHHHHH
Confidence 9999999999999999999999976 489999999965 5778899975 67999999999987753
No 218
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=5.3e-40 Score=318.60 Aligned_cols=173 Identities=55% Similarity=0.958 Sum_probs=154.0
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-cccccEEEEccCCCCCCCCCHH
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-SLKSKIGFVTQDDVLFPHLTVK 84 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-~~~~~i~yv~Q~~~~~~~lTv~ 84 (583)
++.+|+|+|+++++||+++|+||||||||||+++|+|....++.+|+|.++|+++.. ..++.++|++|++.+++.+|++
T Consensus 21 ~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~ 100 (194)
T cd03213 21 GKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVR 100 (194)
T ss_pred cccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHH
Confidence 367999999999999999999999999999999999965113678999999998754 3467799999999999999999
Q ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCC
Q 007952 85 ETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLD 164 (583)
Q Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD 164 (583)
||+.+.... ..||||||||++||++|+.+|++++|||||+|||
T Consensus 101 ~~i~~~~~~-------------------------------------~~LS~G~~qrv~laral~~~p~illlDEP~~~LD 143 (194)
T cd03213 101 ETLMFAAKL-------------------------------------RGLSGGERKRVSIALELVSNPSLLFLDEPTSGLD 143 (194)
T ss_pred HHHHHHHHh-------------------------------------ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCC
Confidence 999764210 0599999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEc
Q 007952 165 STTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 215 (583)
Q Consensus 165 ~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 215 (583)
+.++..+.+.|++++++|+|+|+++|++..++.+.||++++|++|++++.|
T Consensus 144 ~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 144 SSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 999999999999998779999999999865677889999999999998764
No 219
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=9.7e-40 Score=329.76 Aligned_cols=207 Identities=26% Similarity=0.428 Sum_probs=171.0
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCcc-----CCc--------cccccEEEE
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP-----YSK--------SLKSKIGFV 71 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~-----~~~--------~~~~~i~yv 71 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|++ +.. ..++.++|+
T Consensus 14 ~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ 91 (253)
T TIGR02323 14 GGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLA--PDHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFV 91 (253)
T ss_pred CCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEEecccccccccccCCHHHHHHhhhcceEEE
Confidence 34679999999999999999999999999999999999653 578999999976 431 123569999
Q ss_pred ccCCC--CCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCcccChHHHHHHHHHHHHH
Q 007952 72 TQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGERKRVCIGNEII 148 (583)
Q Consensus 72 ~Q~~~--~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~LSgGerqRv~ia~~L~ 148 (583)
+|++. +.+.+|+.||+.+..... . .....+..++++++++.+|+.+ ..++ .++.||||||||++||++|+
T Consensus 92 ~q~~~~~~~~~~~~~~~i~~~~~~~-~-~~~~~~~~~~~~~~l~~l~l~~~~~~~-----~~~~LSgG~~qrv~laral~ 164 (253)
T TIGR02323 92 HQNPRDGLRMRVSAGANIGERLMAI-G-ARHYGNIRAAAHDWLEEVEIDPTRIDD-----LPRAFSGGMQQRLQIARNLV 164 (253)
T ss_pred EeCcccccCccccHHHHHHHHHHHh-c-ccchHHHHHHHHHHHHHcCCChhhhhc-----CchhcCHHHHHHHHHHHHHh
Confidence 99974 456789999997643211 1 0112234567889999999963 4444 46799999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 149 INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 149 ~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
.+|++|+|||||+|||+.++..+.+.|++++++ |.|||+++|++. .+.+.||++++|++|++++.|++++..
T Consensus 165 ~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~-~~~~~~d~~~~l~~G~i~~~~~~~~~~ 237 (253)
T TIGR02323 165 TRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLG-VARLLAQRLLVMQQGRVVESGLTDQVL 237 (253)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999999999998764 899999999965 577789999999999999999987764
No 220
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.3e-40 Score=329.67 Aligned_cols=211 Identities=23% Similarity=0.408 Sum_probs=175.6
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC-C--CcccEEEECCccCCc------cccccEEEEccCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYSK------SLKSKIGFVTQDD 75 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~-~--~~~G~I~~~g~~~~~------~~~~~i~yv~Q~~ 75 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|.... + +++|+|.+||.++.. ..++.++|++|++
T Consensus 14 ~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~ 93 (250)
T PRK14266 14 DDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKP 93 (250)
T ss_pred CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCC
Confidence 356799999999999999999999999999999999996431 2 378999999987642 2356799999999
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 76 VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 76 ~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
.+++. |++||+.+..... ...+.+..++++.+.++.+|+.+...... +..+..||||||||++||++|+.+|++|+
T Consensus 94 ~~~~~-t~~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~Gq~qrv~laral~~~p~lll 169 (250)
T PRK14266 94 NPFPK-SIFDNVAYGLRIH--GEDDEDFIEERVEESLKAAALWDEVKDKL-DKSALGLSGGQQQRLCIARTIAVSPEVIL 169 (250)
T ss_pred ccCcc-hHHHHHHhHHhhc--CCCCHHHHHHHHHHHHHHcCCchhHHHHH-hCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 88885 9999998764322 11233445567888999999854321111 34567999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+.+|++++|++|++++.|++++..
T Consensus 170 lDEP~~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-~~~~~~~~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14266 170 MDEPCSALDPISTTKIEDLIHKLKE-DYTIVIVTHNMQ-QATRVSKYTSFFLNGEIIESGLTDQIF 233 (250)
T ss_pred EcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEECCHH-HHHhhcCEEEEEECCeEEEeCCHHHHH
Confidence 9999999999999999999999964 899999999975 578899999999999999999988763
No 221
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.4e-40 Score=369.76 Aligned_cols=205 Identities=25% Similarity=0.407 Sum_probs=177.5
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-------cccccEEEEccCC--CC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-------SLKSKIGFVTQDD--VL 77 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-------~~~~~i~yv~Q~~--~~ 77 (583)
+.+|+|+||+|++||+++|+||||||||||+|+|+|... +.+|+|.++|+++.. ..+++++||+|++ .+
T Consensus 337 ~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~--p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l 414 (623)
T PRK10261 337 VHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVE--SQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASL 414 (623)
T ss_pred eEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhc
Confidence 579999999999999999999999999999999999763 578999999987642 1356799999997 58
Q ss_pred CCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEE
Q 007952 78 FPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFL 156 (583)
Q Consensus 78 ~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illL 156 (583)
++.+||.|++.+..... ....+++..+++.++++.+||. +..++ ++++|||||||||+||++|+.+|++|||
T Consensus 415 ~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~L~~~gL~~~~~~~-----~~~~LSgGqrQRv~iAraL~~~p~llll 487 (623)
T PRK10261 415 DPRQTVGDSIMEPLRVH--GLLPGKAAAARVAWLLERVGLLPEHAWR-----YPHEFSGGQRQRICIARALALNPKVIIA 487 (623)
T ss_pred CCCCCHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHcCCCHHHhhC-----CcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999999998865432 1113445567789999999996 44444 4679999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 157 DEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 157 DEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
||||+|||+.++.+++++|++++++ |.|||++|||+. .+.++||+|++|++|++++.|+++++.
T Consensus 488 DEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~-~v~~~~dri~vl~~G~iv~~g~~~~i~ 552 (623)
T PRK10261 488 DEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMA-VVERISHRVAVMYLGQIVEIGPRRAVF 552 (623)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999999999875 899999999975 577899999999999999999998874
No 222
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=1.4e-40 Score=332.71 Aligned_cols=201 Identities=31% Similarity=0.496 Sum_probs=161.6
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~lT 82 (583)
+.+|+|+||++++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++.. ..++.++|++|++.+++ .|
T Consensus 16 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~--~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~t 92 (238)
T cd03249 16 VPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFY--DPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFD-GT 92 (238)
T ss_pred ccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccC--CCCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhh-hh
Confidence 56999999999999999999999999999999999965 3679999999987642 23567999999998876 69
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHH-----HHHHHHHHc--CCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEK-----RAIDVINEL--GLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~-----~v~~~l~~l--gL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
|+||+.+.... ...++..+ .+.+.++.+ ++....+ ..+++||||||||++||++|+.+|++++
T Consensus 93 v~e~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~LS~G~~qrv~la~al~~~p~lll 162 (238)
T cd03249 93 IAENIRYGKPD-----ATDEEVEEAAKKANIHDFIMSLPDGYDTLVG-----ERGSQLSGGQKQRIAIARALLRNPKILL 162 (238)
T ss_pred HHHHhhccCCC-----CCHHHHHHHHHHcChHHHHHhhccccceeec-----cCCccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999874221 11111111 112223333 3332222 3467999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAY 223 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~ 223 (583)
|||||+|||+.++..+.+.|++++ +|+|||++||++.. + +.||++++|++|++++.|+.++..+.
T Consensus 163 lDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~~-~-~~~d~v~~l~~G~i~~~~~~~~~~~~ 227 (238)
T cd03249 163 LDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLST-I-RNADLIAVLQNGQVVEQGTHDELMAQ 227 (238)
T ss_pred EeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHH-H-hhCCEEEEEECCEEEEeCCHHHHhhc
Confidence 999999999999999999999997 79999999999753 5 47999999999999999998776543
No 223
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-39 Score=333.25 Aligned_cols=209 Identities=22% Similarity=0.363 Sum_probs=171.0
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCC---CcccEEEECCccCCc------cccccEEEEccCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPYSK------SLKSKIGFVTQDD 75 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~---~~~G~I~~~g~~~~~------~~~~~i~yv~Q~~ 75 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|..... +.+|+|.++|+++.. ..++.++|++|+.
T Consensus 31 ~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~ 110 (274)
T PRK14265 31 GGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRP 110 (274)
T ss_pred CCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCC
Confidence 3457999999999999999999999999999999999975321 258999999987631 2457899999999
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 76 VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 76 ~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
.+++. ||.||+.+....+. .. ...++.+++.++.+++.+..... -+..+..||||||||++||++|+.+|++|+
T Consensus 111 ~l~~~-tv~~nl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LSgGq~qrv~LAraL~~~p~lll 184 (274)
T PRK14265 111 NPFPK-SIYENIAFAPRANG---YK-GNLDELVEDSLRRAAIWEEVKDK-LKEKGTALSGGQQQRLCIARAIAMKPDVLL 184 (274)
T ss_pred ccccc-cHHHHHHhHHHhcC---ch-HHHHHHHHHHHHHcccchhhHHH-hcCCcccCCHHHHHHHHHHHHHhhCCCEEE
Confidence 88875 99999988643221 11 12234567778888874221111 123567999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEc---------CCeEEEEcChhhHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG---------KGSLLYFGKASEAM 221 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~---------~G~iv~~G~~~~~~ 221 (583)
|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.||++++|+ +|++++.|+++++.
T Consensus 185 LDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~~~~~~~~~~G~~~~~g~~~~~~ 257 (274)
T PRK14265 185 MDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQ-QASRVADWTAFFNTEIDEYGKRRGKLVEFSPTEQMF 257 (274)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEecccccccccCceEEEeCCHHHHH
Confidence 9999999999999999999999975 789999999975 5778999999997 79999999998874
No 224
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=6e-40 Score=351.85 Aligned_cols=208 Identities=28% Similarity=0.467 Sum_probs=181.2
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccC--C----ccccccEEEEccCC--C
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY--S----KSLKSKIGFVTQDD--V 76 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~--~----~~~~~~i~yv~Q~~--~ 76 (583)
+...+++||||++++||++||+|+||||||||.|+|+|+.. |.+|+|.++|.+. + +..++++-+|+||+ .
T Consensus 302 ~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~--P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~S 379 (539)
T COG1123 302 GEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLP--PSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSS 379 (539)
T ss_pred cceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEEeCcccccccchhhhhhhheEEEEeCcccc
Confidence 34678999999999999999999999999999999999764 5799999999873 1 13456788888886 6
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEE
Q 007952 77 LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFL 156 (583)
Q Consensus 77 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illL 156 (583)
+.|.+||++++.-......+ ...++.++++.++++.+||... ..++++++||||||||++|||||+.+|++|++
T Consensus 380 LnPr~tV~~~i~epL~~~~~--~~~~~~~~rv~~ll~~VgL~~~----~l~ryP~elSGGQrQRvaIARALa~~P~lli~ 453 (539)
T COG1123 380 LNPRMTVGDILAEPLRIHGG--GSGAERRARVAELLELVGLPPE----FLDRYPHELSGGQRQRVAIARALALEPKLLIL 453 (539)
T ss_pred cCccccHHHHHHhHHhhhcc--cchHHHHHHHHHHHHHcCCCHH----HHhcCchhcCcchhHHHHHHHHHhcCCCEEEe
Confidence 89999999999887654332 2356777889999999999842 33567899999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 157 DEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 157 DEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|||||.||+..+.+++++|+++.++ |.|.|++|||.. .+.++||||.+|++|++|+.|+.+++.
T Consensus 454 DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~-vV~~i~drv~vm~~G~iVE~G~~~~v~ 518 (539)
T COG1123 454 DEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLA-VVRYIADRVAVMYDGRIVEEGPTEKVF 518 (539)
T ss_pred cCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHhhCceEEEEECCeEEEeCCHHHHh
Confidence 9999999999999999999999876 999999999965 588899999999999999999888774
No 225
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=6.6e-40 Score=316.80 Aligned_cols=178 Identities=31% Similarity=0.562 Sum_probs=152.7
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc------cccccEEEEccCCC--
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK------SLKSKIGFVTQDDV-- 76 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~------~~~~~i~yv~Q~~~-- 76 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. ..++.++|++|++.
T Consensus 3 ~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 80 (190)
T TIGR01166 3 GGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLR--PQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQ 80 (190)
T ss_pred CccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceeEEECCEEccccccchHHHHhhEEEEecChhhc
Confidence 45789999999999999999999999999999999999653 578999999987631 23567999999973
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEE
Q 007952 77 LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFL 156 (583)
Q Consensus 77 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illL 156 (583)
++ ..||+||+.+..... ..+.++..++++++++.+||.+..++ .+.+||||||||++||++|+.+|++++|
T Consensus 81 ~~-~~tv~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~laral~~~p~llll 151 (190)
T TIGR01166 81 LF-AADVDQDVAFGPLNL---GLSEAEVERRVREALTAVGASGLRER-----PTHCLSGGEKKRVAIAGAVAMRPDVLLL 151 (190)
T ss_pred cc-cccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCchhhhhC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 45 479999999865422 23344555678899999999876665 4579999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCC
Q 007952 157 DEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPS 193 (583)
Q Consensus 157 DEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~ 193 (583)
||||+|||+.++..+.+.|++++++|+|||++||++.
T Consensus 152 DEPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 152 DEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 9999999999999999999999888999999999974
No 226
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.6e-40 Score=334.02 Aligned_cols=206 Identities=24% Similarity=0.410 Sum_probs=169.9
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccc-cccEEEEccCCCCC--CCCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL-KSKIGFVTQDDVLF--PHLT 82 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~-~~~i~yv~Q~~~~~--~~lT 82 (583)
++.+|+|+|+++++||+++|+||||||||||+|+|+|... +.+|+|.++|+++.... ++.++|++|++.+. ...+
T Consensus 19 ~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~ 96 (272)
T PRK15056 19 GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVR--LASGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVL 96 (272)
T ss_pred CcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEhHHhhccceEEEeccccccccCCCcc
Confidence 4679999999999999999999999999999999999653 57899999998865433 34699999997652 2347
Q ss_pred HHHHHHHHHHcCCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 007952 83 VKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 161 (583)
Q Consensus 83 v~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPts 161 (583)
++|++.++...... ........+++++++++.+||.+..++. +..||||||||++||++|+.+|++++|||||+
T Consensus 97 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgG~~qrv~laraL~~~p~llllDEPt~ 171 (272)
T PRK15056 97 VEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQ-----IGELSGGQKKRVFLARAIAQQGQVILLDEPFT 171 (272)
T ss_pred hhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 89988654211000 0012233445678899999998776654 56899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhH
Q 007952 162 GLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 220 (583)
Q Consensus 162 gLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 220 (583)
|||+.++..+.+.|++++++|+|||++||++. ++.+.||+++++ +|++++.|+++++
T Consensus 172 ~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~-~~~~~~d~v~~~-~G~i~~~g~~~~~ 228 (272)
T PRK15056 172 GVDVKTEARIISLLRELRDEGKTMLVSTHNLG-SVTEFCDYTVMV-KGTVLASGPTETT 228 (272)
T ss_pred cCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE-CCEEEeecCHHhc
Confidence 99999999999999999878999999999975 577899999887 8999999998875
No 227
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.6e-40 Score=332.20 Aligned_cols=209 Identities=22% Similarity=0.392 Sum_probs=171.7
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC-C--CcccEEEECCccCC------ccccccEEEEccCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYS------KSLKSKIGFVTQDD 75 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~-~--~~~G~I~~~g~~~~------~~~~~~i~yv~Q~~ 75 (583)
+++.+|+|+|+++++||+++|+||||||||||+|+|+|.... + +++|+|.++|+++. ...++.++|++|++
T Consensus 21 ~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 100 (264)
T PRK14243 21 GSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKP 100 (264)
T ss_pred CCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEccCC
Confidence 346799999999999999999999999999999999996532 1 36899999998763 12456799999999
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 76 VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 76 ~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
.+++ .||+||+.+....+ ... .+..++++++++.+++.+..+.. -+..+.+||||||||++||++|+.+|++|+
T Consensus 101 ~~~~-~tv~enl~~~~~~~---~~~-~~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LSgGq~qrv~laral~~~p~lll 174 (264)
T PRK14243 101 NPFP-KSIYDNIAYGARIN---GYK-GDMDELVERSLRQAALWDEVKDK-LKQSGLSLSGGQQQRLCIARAIAVQPEVIL 174 (264)
T ss_pred cccc-ccHHHHHHhhhhhc---Ccc-hHHHHHHHHHHHHhCchhhHHHH-hcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 8888 49999998865322 111 23345567778888874321111 123567999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEc---------CCeEEEEcChhhHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG---------KGSLLYFGKASEAM 221 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~---------~G~iv~~G~~~~~~ 221 (583)
|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+.||++++|+ +|++++.|+++++.
T Consensus 175 LDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~-~~~~~~d~v~~l~~~~~~~~~~~g~i~~~~~~~~~~ 247 (264)
T PRK14243 175 MDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQ-QAARVSDMTAFFNVELTEGGGRYGYLVEFDRTEKIF 247 (264)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEecccccccccCceEEEeCCHHHHH
Confidence 9999999999999999999999976 589999999965 5789999999998 79999999998874
No 228
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-39 Score=327.90 Aligned_cols=211 Identities=27% Similarity=0.468 Sum_probs=172.9
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEE------ECCccCCc----cccccEEEEcc
Q 007952 4 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSIT------YNDHPYSK----SLKSKIGFVTQ 73 (583)
Q Consensus 4 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~------~~g~~~~~----~~~~~i~yv~Q 73 (583)
.+++.+|+|+||++++||+++|+||||||||||+++|+|... +.+|+|. ++|+++.+ ..++.++|++|
T Consensus 20 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~--~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q 97 (257)
T PRK14246 20 INDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIE--IYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQ 97 (257)
T ss_pred cCCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCcCceeEcCEEEECCcccccCCHHHHhcceEEEcc
Confidence 356789999999999999999999999999999999999653 4555554 44555421 24677999999
Q ss_pred CCCCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCE
Q 007952 74 DDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSL 153 (583)
Q Consensus 74 ~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~i 153 (583)
++.+++.+||+||+.+..... ....+++..+++.++++.+++.+...... +..++.||||||||++||++|+.+|++
T Consensus 98 ~~~~~~~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~LS~G~~qrl~laral~~~P~l 174 (257)
T PRK14246 98 QPNPFPHLSIYDNIAYPLKSH--GIKEKREIKKIVEECLRKVGLWKEVYDRL-NSPASQLSGGQQQRLTIARALALKPKV 174 (257)
T ss_pred CCccCCCCcHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCCccchhhh-cCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 999999999999999875322 11234455567889999999964211111 235679999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 154 LFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 154 llLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
++|||||+|||+.++..+.+.|+++++ +.|||++||++. .+.+.||++++|++|+++..|++++..
T Consensus 175 lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~-~~~~~~d~v~~l~~g~i~~~g~~~~~~ 240 (257)
T PRK14246 175 LLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQ-QVARVADYVAFLYNGELVEWGSSNEIF 240 (257)
T ss_pred EEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999965 699999999965 567899999999999999999988764
No 229
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.2e-40 Score=361.43 Aligned_cols=205 Identities=25% Similarity=0.386 Sum_probs=175.0
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-----cccccEEEEccCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-----SLKSKIGFVTQDDVLFP 79 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-----~~~~~i~yv~Q~~~~~~ 79 (583)
+++.+|+|+|+++++||+++|+||||||||||+|+|+|... +.+|+|.++|+++.. ..++.++||+|++.+++
T Consensus 15 ~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~ 92 (501)
T PRK11288 15 PGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQ--PDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVP 92 (501)
T ss_pred CCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEECCCCCHHHHHhCCEEEEEechhccC
Confidence 45679999999999999999999999999999999999653 578999999987642 23567999999999999
Q ss_pred CCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCC
Q 007952 80 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEP 159 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEP 159 (583)
.+||+||+.+.............+.+++++++++.+||.+..++ .+.+||||||||++||++|+.+|++|+||||
T Consensus 93 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LSgGq~qrv~laral~~~p~lllLDEP 167 (501)
T PRK11288 93 EMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDT-----PLKYLSIGQRQMVEIAKALARNARVIAFDEP 167 (501)
T ss_pred CCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCC-----chhhCCHHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 99999999885321111112344555678999999999865554 4679999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcCh
Q 007952 160 TSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 217 (583)
Q Consensus 160 tsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 217 (583)
|+|||+.++..+.+.|++++++|+|||++||++. ++.+.||++++|++|+++..++.
T Consensus 168 t~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~-~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 168 TSSLSAREIEQLFRVIRELRAEGRVILYVSHRME-EIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeecCc
Confidence 9999999999999999999888999999999975 57788999999999999877653
No 230
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=8.3e-40 Score=396.46 Aligned_cols=208 Identities=27% Similarity=0.411 Sum_probs=187.4
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc---cccccEEEEccCCCCCCCCCH
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---SLKSKIGFVTQDDVLFPHLTV 83 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~---~~~~~i~yv~Q~~~~~~~lTv 83 (583)
+.+|+|+|++|++||++||+||||||||||+|+|+|... +++|+|.++|+++.+ ..++.+||+||++.+++.+||
T Consensus 1952 ~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~--ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv 2029 (2272)
T TIGR01257 1952 SPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTT--VTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTG 2029 (2272)
T ss_pred ceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCC--CCccEEEECCEECcchHHHHhhhEEEEeccccCCCCCCH
Confidence 679999999999999999999999999999999999763 678999999988742 245679999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCC
Q 007952 84 KETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGL 163 (583)
Q Consensus 84 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgL 163 (583)
+|++.+.+.++. .+.++.+++++++++.+||.+..|++ +++||||||||++||+||+.+|++++|||||+||
T Consensus 2030 ~E~L~l~a~l~g---~~~~~~~~~v~~lLe~lgL~~~~dk~-----~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGL 2101 (2272)
T TIGR01257 2030 REHLYLYARLRG---VPAEEIEKVANWSIQSLGLSLYADRL-----AGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGM 2101 (2272)
T ss_pred HHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHHHhcCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCC
Confidence 999998776542 34455567789999999999887765 5699999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHHHHH
Q 007952 164 DSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFS 225 (583)
Q Consensus 164 D~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~ 225 (583)
|+.+++.+.+.|++++++|+|||++||++. ++.++|||+++|++|+++..|+++++.+.|.
T Consensus 2102 Dp~sr~~l~~lL~~l~~~g~TIILtTH~me-e~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~~g 2162 (2272)
T TIGR01257 2102 DPQARRMLWNTIVSIIREGRAVVLTSHSME-ECEALCTRLAIMVKGAFQCLGTIQHLKSKFG 2162 (2272)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHHHHhC
Confidence 999999999999999888999999999964 6889999999999999999999999988775
No 231
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=1.1e-39 Score=362.79 Aligned_cols=206 Identities=30% Similarity=0.503 Sum_probs=176.2
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-------cccccEEEEccCC--C
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-------SLKSKIGFVTQDD--V 76 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-------~~~~~i~yv~Q~~--~ 76 (583)
++.+|+|+|+++++||+++|+||||||||||+|+|+|.. + .+|+|+++|+++.. ..++.++||+|++ .
T Consensus 298 ~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~--~-~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~ 374 (529)
T PRK15134 298 HNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI--N-SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSS 374 (529)
T ss_pred cceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC--C-CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhh
Confidence 467999999999999999999999999999999999965 3 58999999987642 1246799999996 4
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 77 LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 77 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
+++.+||+||+.+....+.. ..+..+.+++++++++.+||+ +..++ .+.+|||||||||+||++|+.+|++|+
T Consensus 375 l~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~LSgG~~qrv~la~al~~~p~lll 448 (529)
T PRK15134 375 LNPRLNVLQIIEEGLRVHQP-TLSAAQREQQVIAVMEEVGLDPETRHR-----YPAEFSGGQRQRIAIARALILKPSLII 448 (529)
T ss_pred cCCcccHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHcCCCHHHHhc-----CCccCCHHHHHHHHHHHHHhCCCCEEE
Confidence 78889999999886533211 123444556789999999997 34554 467999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|||||+|||+.++..+++.|++++++ |+|||++||++. .+.++||++++|++|+++..|+++++.
T Consensus 449 lDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 514 (529)
T PRK15134 449 LDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLH-VVRALCHQVIVLRQGEVVEQGDCERVF 514 (529)
T ss_pred eeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhcCeEEEEECCEEEEEcCHHHHh
Confidence 99999999999999999999999875 899999999965 477899999999999999999988764
No 232
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=1.5e-39 Score=361.05 Aligned_cols=211 Identities=29% Similarity=0.444 Sum_probs=177.9
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEEC-----------------------CccCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN-----------------------DHPYS 61 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~-----------------------g~~~~ 61 (583)
+++.+|+|+|+++++||+++|+||||||||||+|+|+|....++++|+|.++ |.++.
T Consensus 11 ~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~ 90 (520)
T TIGR03269 11 DGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLE 90 (520)
T ss_pred CCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccccccccccccccc
Confidence 4567999999999999999999999999999999999964213578999997 22210
Q ss_pred --------------ccccccEEEEccC-CCCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCcccccccc
Q 007952 62 --------------KSLKSKIGFVTQD-DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIG 126 (583)
Q Consensus 62 --------------~~~~~~i~yv~Q~-~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig 126 (583)
...++.++|++|+ +.+++.+||+||+.+..... ..+.++.++++.++++.+||++..+.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~--- 164 (520)
T TIGR03269 91 PEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEI---GYEGKEAVGRAVDLIEMVQLSHRITH--- 164 (520)
T ss_pred ccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhc---
Confidence 0134679999997 67888999999999865432 23445556789999999999876654
Q ss_pred CccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhhcCeEEE
Q 007952 127 GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLIL 205 (583)
Q Consensus 127 ~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~ 205 (583)
.+.+|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|+++++ .|+|||++||++. .+.+.||++++
T Consensus 165 --~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~-~~~~~~d~i~~ 241 (520)
T TIGR03269 165 --IARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPE-VIEDLSDKAIW 241 (520)
T ss_pred --CcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEEE
Confidence 4679999999999999999999999999999999999999999999999976 4899999999975 46789999999
Q ss_pred EcCCeEEEEcChhhHHHHH
Q 007952 206 LGKGSLLYFGKASEAMAYF 224 (583)
Q Consensus 206 L~~G~iv~~G~~~~~~~~f 224 (583)
|++|++++.|++++..+.+
T Consensus 242 l~~G~i~~~g~~~~~~~~~ 260 (520)
T TIGR03269 242 LENGEIKEEGTPDEVVAVF 260 (520)
T ss_pred EeCCEEeeecCHHHHHHHH
Confidence 9999999999998876654
No 233
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.8e-40 Score=328.62 Aligned_cols=201 Identities=33% Similarity=0.507 Sum_probs=162.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~lT 82 (583)
+.+++|+|+++++||+++|+|||||||||||++|+|... +.+|+|.++|.++.. ..++.++|++|++.+++. |
T Consensus 16 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~-t 92 (229)
T cd03254 16 KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYD--PQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSG-T 92 (229)
T ss_pred CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCEeHHHcCHHHHhhhEEEecCCchhhhh-H
Confidence 569999999999999999999999999999999999753 678999999987642 346679999999988876 9
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCcccccc------ccCccCcccChHHHHHHHHHHHHHhCCCEEEE
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTM------IGGSFVRGVSGGERKRVCIGNEIIINPSLLFL 156 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~------ig~~~~~~LSgGerqRv~ia~~L~~~p~illL 156 (583)
|+||+.+... . ... +++++.++.+++.+..+.. ..+..+++||||||||++||++|+.+|++++|
T Consensus 93 v~~~~~~~~~----~-~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llll 163 (229)
T cd03254 93 IMENIRLGRP----N-ATD----EEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILIL 163 (229)
T ss_pred HHHHHhccCC----C-CCH----HHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999986421 1 111 2233344444443222111 01234679999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 157 DEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 157 DEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
||||+|||+.++..+++.|++++ +|+|||++||++.. + +.||++++|++|++++.|+.++..+
T Consensus 164 DEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~-~-~~~d~i~~l~~g~~~~~~~~~~~~~ 226 (229)
T cd03254 164 DEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLST-I-KNADKILVLDDGKIIEEGTHDELLA 226 (229)
T ss_pred eCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHH-H-hhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 99999999999999999999996 58999999999754 5 4699999999999999998876543
No 234
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=2.2e-39 Score=321.32 Aligned_cols=192 Identities=26% Similarity=0.373 Sum_probs=162.7
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHH
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVK 84 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~ 84 (583)
+++++|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|++... ..+...+.+.+||+
T Consensus 33 ~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~--------~~~~~~~~~~~tv~ 102 (224)
T cd03220 33 GEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYP--PDSGTVTVRGRVSSL--------LGLGGGFNPELTGR 102 (224)
T ss_pred CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEchh--------hcccccCCCCCcHH
Confidence 56789999999999999999999999999999999999653 678999999986421 11223456779999
Q ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCC
Q 007952 85 ETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLD 164 (583)
Q Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD 164 (583)
||+.+....+ ..+.++..++++++++.+||++..++. +.+||||||||++||++|+.+|++++|||||+|||
T Consensus 103 enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD 174 (224)
T cd03220 103 ENIYLNGRLL---GLSRKEIDEKIDEIIEFSELGDFIDLP-----VKTYSSGMKARLAFAIATALEPDILLIDEVLAVGD 174 (224)
T ss_pred HHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 9998875432 123445556788899999998776654 56899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEc
Q 007952 165 STTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 215 (583)
Q Consensus 165 ~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 215 (583)
+.++..+.+.|++++++|+|||++||++. ++.+.+|++++|++|++++.|
T Consensus 175 ~~~~~~~~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 175 AAFQEKCQRRLRELLKQGKTVILVSHDPS-SIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEecC
Confidence 99999999999999877899999999965 467889999999999998765
No 235
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=4.5e-40 Score=376.68 Aligned_cols=198 Identities=31% Similarity=0.489 Sum_probs=169.9
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~l 81 (583)
++++|+|+|+++++||.+||+||||||||||+|+|+|... +.+|+|.+||+++.+ .+|+.+|||+||+.+|+.
T Consensus 465 ~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~--p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g- 541 (686)
T TIGR03797 465 GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFET--PESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSG- 541 (686)
T ss_pred CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcc-
Confidence 4679999999999999999999999999999999999653 679999999998753 468899999999999986
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCccCcccChHHHHHHHHHHHHHhCCCEE
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-------CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLL 154 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~il 154 (583)
|++||+.++. | .+. +++.++++..|+.+ -.||.+|+ ...+||||||||++|||||+++|++|
T Consensus 542 TI~eNi~~~~----~--~~~----e~i~~al~~a~l~~~i~~lp~G~dt~ige-~G~~LSGGQrQRialARAll~~p~iL 610 (686)
T TIGR03797 542 SIFENIAGGA----P--LTL----DEAWEAARMAGLAEDIRAMPMGMHTVISE-GGGTLSGGQRQRLLIARALVRKPRIL 610 (686)
T ss_pred cHHHHHhcCC----C--CCH----HHHHHHHHHcCcHHHHHhccccccccccC-CCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999998752 1 232 33555666666543 34677764 35789999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 155 FLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
+||||||+||+.++.++.+.|+++ ++|+|+++|+++ ..+.+|+|++|++|++++.|+++++++
T Consensus 611 iLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~--~i~~~D~Iivl~~G~iv~~G~~~~Ll~ 673 (686)
T TIGR03797 611 LFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLS--TIRNADRIYVLDAGRVVQQGTYDELMA 673 (686)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChH--HHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999886 589999999974 357799999999999999999998763
No 236
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=4.8e-40 Score=325.01 Aligned_cols=194 Identities=30% Similarity=0.538 Sum_probs=161.7
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~lT 82 (583)
+.+|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++.. ..++.++|++|++.+++ .|
T Consensus 17 ~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~--~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~t 93 (220)
T cd03245 17 IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLY--KPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFY-GT 93 (220)
T ss_pred cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc--CCCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCcccc-ch
Confidence 56999999999999999999999999999999999965 3578999999987632 23567999999998887 69
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCcccccccc------CccCcccChHHHHHHHHHHHHHhCCCEEEE
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIG------GSFVRGVSGGERKRVCIGNEIIINPSLLFL 156 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig------~~~~~~LSgGerqRv~ia~~L~~~p~illL 156 (583)
|.||+.+... ... .+++.++++.+++.+..+.... ...+.+||||||||++||++|+.+|++|+|
T Consensus 94 v~e~l~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llll 164 (220)
T cd03245 94 LRDNITLGAP-----LAD----DERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLL 164 (220)
T ss_pred HHHHhhcCCC-----CCC----HHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999976421 111 2345677888888765554321 123568999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEc
Q 007952 157 DEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 215 (583)
Q Consensus 157 DEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 215 (583)
||||+|||+.++..+.+.|++++++ +|||++||++. .+ +.||++++|++|++++.|
T Consensus 165 DEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~-~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 165 DEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPS-LL-DLVDRIIVMDSGRIVADG 220 (220)
T ss_pred eCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHH-HH-HhCCEEEEEeCCeEeecC
Confidence 9999999999999999999999764 89999999975 34 799999999999998754
No 237
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=4.1e-40 Score=370.58 Aligned_cols=202 Identities=28% Similarity=0.453 Sum_probs=171.2
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~l 81 (583)
++++|+|+|+++++||.+||+||||||||||+|+|+|... +.+|+|.+||.++++ .+++.++||+||+.+|+.
T Consensus 355 ~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~- 431 (582)
T PRK11176 355 EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYD--IDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFND- 431 (582)
T ss_pred CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccC--CCCceEEECCEEhhhcCHHHHHhhceEEccCceeecc-
Confidence 4679999999999999999999999999999999999653 578999999998753 467889999999999985
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCccCcccChHHHHHHHHHHHHHhCCCEE
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL-------ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLL 154 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~il 154 (583)
|++||+.++. ++..+. ++++++++..|+ ++-.||.+|.. ...||||||||++|||+|+++|++|
T Consensus 432 Ti~~Ni~~~~----~~~~~~----~~i~~al~~~~l~~~i~~lp~Gldt~ig~~-g~~LSGGqrQRi~LARall~~~~il 502 (582)
T PRK11176 432 TIANNIAYAR----TEQYSR----EQIEEAARMAYAMDFINKMDNGLDTVIGEN-GVLLSGGQRQRIAIARALLRDSPIL 502 (582)
T ss_pred hHHHHHhcCC----CCCCCH----HHHHHHHHHhCcHHHHHhcccccCceeCCC-CCcCCHHHHHHHHHHHHHHhCCCEE
Confidence 9999998742 212233 334455555553 34457878753 5789999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 155 FLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
+||||||+||+.++..+++.|+++. +++|+|++||+++ ..+.||+|++|++|++++.|+++++.+
T Consensus 503 ilDEptsaLD~~t~~~i~~~l~~~~-~~~tvI~VtHr~~--~~~~~D~Ii~l~~g~i~e~g~~~~l~~ 567 (582)
T PRK11176 503 ILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLS--TIEKADEILVVEDGEIVERGTHAELLA 567 (582)
T ss_pred EEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999999985 4799999999974 467899999999999999999998754
No 238
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.2e-40 Score=347.42 Aligned_cols=200 Identities=34% Similarity=0.589 Sum_probs=171.0
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~l 81 (583)
+++||+++||+|++||-+||+|+|||||||++|+|.+.. ..+|+|.+||+++.+ .+|+.|||||||..+|.+
T Consensus 364 k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~---d~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFnd- 439 (591)
T KOG0057|consen 364 KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFF---DYSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFND- 439 (591)
T ss_pred CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHh---ccCCcEEECCeeHhhhChHHhhhheeEeCCcccccch-
Confidence 445999999999999999999999999999999999754 368999999998753 578899999999999986
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCccCcccChHHHHHHHHHHHHHhCCCEE
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL-------ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLL 154 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~il 154 (583)
||.+|+.|+.. ..+.+ +|.+..+..|+ ++-..|.+|+ ....|||||||||++|||++.||+|+
T Consensus 440 TIl~NI~YGn~-----sas~e----eV~e~~k~a~~hd~i~~l~~GY~T~VGe-rG~~LSGGekQrvslaRa~lKda~Il 509 (591)
T KOG0057|consen 440 TILYNIKYGNP-----SASDE----EVVEACKRAGLHDVISRLPDGYQTLVGE-RGLMLSGGEKQRVSLARAFLKDAPIL 509 (591)
T ss_pred hHHHHhhcCCC-----CcCHH----HHHHHHHHcCcHHHHHhccccchhhHhh-cccccccchHHHHHHHHHHhcCCCeE
Confidence 99999998731 22333 34455555555 3445566764 46789999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 155 FLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
++|||||.||..+..++++.+.+. ..++|+|++.|+.+ ...-||+|++|++|++...|+.++++.
T Consensus 510 ~~DEaTS~LD~~TE~~i~~~i~~~-~~~rTvI~IvH~l~--ll~~~DkI~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 510 LLDEATSALDSETEREILDMIMDV-MSGRTVIMIVHRLD--LLKDFDKIIVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred EecCcccccchhhHHHHHHHHHHh-cCCCeEEEEEecch--hHhcCCEEEEEECCeeEEeccHHHHhh
Confidence 999999999999999999999993 45999999999964 467899999999999999999999976
No 239
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-39 Score=335.30 Aligned_cols=213 Identities=24% Similarity=0.444 Sum_probs=173.0
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC---CCcccEEEECCccCCc------cccccEEEEccCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME---PTVGGSITYNDHPYSK------SLKSKIGFVTQDD 75 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~---~~~~G~I~~~g~~~~~------~~~~~i~yv~Q~~ 75 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|.... ++.+|+|.++|.++.+ ..++.++|++|++
T Consensus 56 ~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~ 135 (305)
T PRK14264 56 GDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSP 135 (305)
T ss_pred CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHhhceEEEccCC
Confidence 346799999999999999999999999999999999997532 1478999999987642 2356799999999
Q ss_pred CCCCCCCHHHHHHHHHHcCCCC---------CCC-HHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHH
Q 007952 76 VLFPHLTVKETLTYAALLRLPN---------TLT-KQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGN 145 (583)
Q Consensus 76 ~~~~~lTv~e~l~~~~~~~~~~---------~~~-~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~ 145 (583)
.+++ .||+||+.+........ ... .+...+++.++++.+++.+...... +..+++||||||||++||+
T Consensus 136 ~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgGq~qrv~LAr 213 (305)
T PRK14264 136 NPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRL-DDNALGLSGGQQQRLCIAR 213 (305)
T ss_pred cccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHh-cCccccCCHHHHHHHHHHH
Confidence 8887 49999999865321100 011 2233566888999998853222221 3456899999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeE-EEEcCCeEEEEcChhhHH
Q 007952 146 EIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKL-ILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 146 ~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v-~~L~~G~iv~~G~~~~~~ 221 (583)
+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. .+.++||++ ++|++|++++.|++++..
T Consensus 214 aL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~i~~~~d~i~~~l~~G~i~~~g~~~~~~ 288 (305)
T PRK14264 214 CLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNMQ-QAARISDQTAVFLTGGELVEYDDTDKIF 288 (305)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhcCEEEEEecCCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999977 589999999975 467889996 578999999999988763
No 240
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=1.1e-39 Score=323.76 Aligned_cols=198 Identities=24% Similarity=0.409 Sum_probs=164.4
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPH 80 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~ 80 (583)
+++++++|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++.. ..++.++|++|++.+++.
T Consensus 18 ~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~--~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~ 95 (225)
T PRK10247 18 GDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLI--SPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGD 95 (225)
T ss_pred CCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhccc--CCCCCeEEECCEEcCcCCHHHHHhccEEEecccccccc
Confidence 4567999999999999999999999999999999999965 3679999999987642 245679999999988874
Q ss_pred CCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCC
Q 007952 81 LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEP 159 (583)
Q Consensus 81 lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEP 159 (583)
||+||+.+....+. .. ..+++++++++.+|+. +..++ .++.||||||||++||++|+.+|++++||||
T Consensus 96 -tv~enl~~~~~~~~---~~--~~~~~~~~~l~~~~l~~~~~~~-----~~~~LS~G~~qrv~laral~~~p~llllDEP 164 (225)
T PRK10247 96 -TVYDNLIFPWQIRN---QQ--PDPAIFLDDLERFALPDTILTK-----NIAELSGGEKQRISLIRNLQFMPKVLLLDEI 164 (225)
T ss_pred -cHHHHHHhHHhhcC---CC--hHHHHHHHHHHHcCCChHHhcC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 99999987643321 11 1234578899999995 34443 4679999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEc-CCeEEEEcCh
Q 007952 160 TSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLG-KGSLLYFGKA 217 (583)
Q Consensus 160 tsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~-~G~iv~~G~~ 217 (583)
|+|||+.++..+.+.|++++++ |.|||++||++.. + +.||++++|+ ++..+..|..
T Consensus 165 t~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~-~-~~~d~i~~l~~~~~~~~~~~~ 222 (225)
T PRK10247 165 TSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDE-I-NHADKVITLQPHAGEMQEARY 222 (225)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHH-H-HhCCEEEEEecccchHhhhhh
Confidence 9999999999999999999764 8999999999754 5 4699999995 5555565653
No 241
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-39 Score=359.54 Aligned_cols=208 Identities=22% Similarity=0.403 Sum_probs=175.0
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-----cccccEEEEccCC---CC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-----SLKSKIGFVTQDD---VL 77 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-----~~~~~i~yv~Q~~---~~ 77 (583)
++.+|+|+||++++||+++|+||||||||||+|+|+|... ++.+|+|.++|+++.. ..++.++|++|++ .+
T Consensus 274 ~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~-~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 352 (506)
T PRK13549 274 HIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYP-GRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGI 352 (506)
T ss_pred ccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCC-CCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCC
Confidence 4579999999999999999999999999999999999653 2478999999987642 2345699999995 47
Q ss_pred CCCCCHHHHHHHHHHcCCCC--CCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccChHHHHHHHHHHHHHhCCCEE
Q 007952 78 FPHLTVKETLTYAALLRLPN--TLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLL 154 (583)
Q Consensus 78 ~~~lTv~e~l~~~~~~~~~~--~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~il 154 (583)
++.+||.||+.+........ ..+.++.+++++++++.+++. +..++ .++.|||||||||+||++|+.+|++|
T Consensus 353 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~LSgG~kqrv~lA~al~~~p~ll 427 (506)
T PRK13549 353 VPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPEL-----AIARLSGGNQQKAVLAKCLLLNPKIL 427 (506)
T ss_pred cCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCccc-----ccccCCHHHHHHHHHHHHHhhCCCEE
Confidence 88999999998753211110 012334456789999999996 45554 45799999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhH
Q 007952 155 FLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 220 (583)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 220 (583)
+|||||+|||+.++..+.+.|++++++|+|||++|||+. ++.++||++++|++|+++..|+++++
T Consensus 428 lLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 492 (506)
T PRK13549 428 ILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELP-EVLGLSDRVLVMHEGKLKGDLINHNL 492 (506)
T ss_pred EEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEeccccC
Confidence 999999999999999999999999888999999999975 57889999999999999999987664
No 242
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=2.4e-39 Score=320.87 Aligned_cols=197 Identities=28% Similarity=0.434 Sum_probs=164.3
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCC--CCCCHHHHHHHHHH
Q 007952 15 GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLF--PHLTVKETLTYAAL 92 (583)
Q Consensus 15 ~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~--~~lTv~e~l~~~~~ 92 (583)
+++++||+++|+||||||||||+++|+|... +.+|+|.+||+++.+ .++.++|++|++.++ ..+|+.||+.+...
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~-~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~ 77 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIP--PAKGTVKVAGASPGK-GWRHIGYVPQRHEFAWDFPISVAHTVMSGRT 77 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCccchH-hhCcEEEecccccccCCCCccHHHHHHhccc
Confidence 4789999999999999999999999999653 578999999987643 456799999998764 34799999987532
Q ss_pred cCCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHH
Q 007952 93 LRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRI 171 (583)
Q Consensus 93 ~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~~~~~i 171 (583)
.... ......+.++++.++++.+|+++..++. +.+||||||||++||++|+.+|+++++||||+|||+.++..+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l 152 (223)
T TIGR03771 78 GHIGWLRRPCVADFAAVRDALRRVGLTELADRP-----VGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELL 152 (223)
T ss_pred cccccccCCcHHHHHHHHHHHHHhCCchhhcCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence 1100 0011223345688999999998766653 568999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 172 VQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 172 ~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
.+.|++++++|+|+|++||++. ++.+.||+++++ +|++++.|++++..
T Consensus 153 ~~~l~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l-~G~i~~~~~~~~~~ 200 (223)
T TIGR03771 153 TELFIELAGAGTAILMTTHDLA-QAMATCDRVVLL-NGRVIADGTPQQLQ 200 (223)
T ss_pred HHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEE-CCEEEeecCHHHhc
Confidence 9999999878999999999965 577899999999 89999999988753
No 243
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=3.1e-39 Score=359.11 Aligned_cols=207 Identities=24% Similarity=0.440 Sum_probs=175.5
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCC---CcccEEEECCccCCc-------ccc-ccEEEEccCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPYSK-------SLK-SKIGFVTQDD 75 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~---~~~G~I~~~g~~~~~-------~~~-~~i~yv~Q~~ 75 (583)
+.+|+|+||++++||+++|+||||||||||+|+|+|.+++. +++|+|.++|+++.. ..+ +.+|||+|++
T Consensus 22 ~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~ 101 (529)
T PRK15134 22 RTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEP 101 (529)
T ss_pred eeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCc
Confidence 57999999999999999999999999999999999976421 268999999988642 122 5799999997
Q ss_pred C--CCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCcc---ccccccCccCcccChHHHHHHHHHHHHHhC
Q 007952 76 V--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC---QDTMIGGSFVRGVSGGERKRVCIGNEIIIN 150 (583)
Q Consensus 76 ~--~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~---~~~~ig~~~~~~LSgGerqRv~ia~~L~~~ 150 (583)
. +++.+|++|++.+..... ...+..+..++++++++.+||.+. .++ .+.+|||||||||+||++|+.+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~~~~LSgGe~qrv~iAraL~~~ 174 (529)
T PRK15134 102 MVSLNPLHTLEKQLYEVLSLH--RGMRREAARGEILNCLDRVGIRQAAKRLTD-----YPHQLSGGERQRVMIAMALLTR 174 (529)
T ss_pred hhhcCchhhHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHCCCCChHHHHhh-----CCcccCHHHHHHHHHHHHHhcC
Confidence 4 677889999987654321 123455566789999999999752 243 4679999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 151 PSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 151 p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|++|+|||||+|||+.++..+++.|++++++ |+|||++||++. .+.+.||+|++|++|++++.|+++++.
T Consensus 175 p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~dri~~l~~G~i~~~g~~~~~~ 245 (529)
T PRK15134 175 PELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLS-IVRKLADRVAVMQNGRCVEQNRAATLF 245 (529)
T ss_pred CCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHH-HHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999999875 899999999975 467899999999999999999988764
No 244
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-39 Score=366.07 Aligned_cols=209 Identities=23% Similarity=0.367 Sum_probs=175.9
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccC-------------Cc----cc-ccc
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY-------------SK----SL-KSK 67 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~-------------~~----~~-~~~ 67 (583)
.+++|+|+||++++||++||+||||||||||+|+|+|.+. +.+|+|.++|..+ .. .. ++.
T Consensus 28 ~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~--p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 105 (623)
T PRK10261 28 KIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLE--QAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGAD 105 (623)
T ss_pred ceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC--CCCeEEEECCEEeccccccccccccCCHHHHHHHhCCC
Confidence 3579999999999999999999999999999999999763 5689999988632 10 12 246
Q ss_pred EEEEccCC--CCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHH
Q 007952 68 IGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGN 145 (583)
Q Consensus 68 i~yv~Q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~ 145 (583)
+|||+|++ .+++.+||+||+.+...... ..+..+.++++.++++.+||.+..+ .-+.++.+|||||||||+||+
T Consensus 106 ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~--~~~~~~~~LSgGq~QRv~iA~ 181 (623)
T PRK10261 106 MAMIFQEPMTSLNPVFTVGEQIAESIRLHQ--GASREEAMVEAKRMLDQVRIPEAQT--ILSRYPHQLSGGMRQRVMIAM 181 (623)
T ss_pred EEEEEeCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChhh--HHhCCCccCCHHHHHHHHHHH
Confidence 99999997 68899999999998765321 2345566678999999999964210 112357899999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 146 EIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 146 ~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
||+.+|++|||||||+|||+.++.++.++|++++++ |+|||++||++. .+.++||+|++|++|++++.|+++++.
T Consensus 182 AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~-~~~~~adri~vl~~G~i~~~g~~~~~~ 257 (623)
T PRK10261 182 ALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMG-VVAEIADRVLVMYQGEAVETGSVEQIF 257 (623)
T ss_pred HHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEeeCCeecccCCHHHhh
Confidence 999999999999999999999999999999999865 999999999965 577899999999999999999988764
No 245
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.5e-39 Score=316.34 Aligned_cols=188 Identities=25% Similarity=0.438 Sum_probs=160.5
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc---cccccEEEEccCCCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---SLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~---~~~~~i~yv~Q~~~~~~~l 81 (583)
+.+.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. ..++.++|++|++.+++.+
T Consensus 12 ~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (204)
T PRK13538 12 DERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLAR--PDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTEL 89 (204)
T ss_pred CCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEcccchHHhhhheEEeCCccccCcCC
Confidence 34679999999999999999999999999999999999653 678999999987642 3466799999999999999
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 161 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPts 161 (583)
|+.||+.+....+. . +.+++++++++.+||.+..++ .+..||||||||++||++|+++|++++|||||+
T Consensus 90 tv~e~l~~~~~~~~---~---~~~~~~~~~l~~~gl~~~~~~-----~~~~LS~G~~qrl~la~al~~~p~llllDEPt~ 158 (204)
T PRK13538 90 TALENLRFYQRLHG---P---GDDEALWEALAQVGLAGFEDV-----PVRQLSAGQQRRVALARLWLTRAPLWILDEPFT 158 (204)
T ss_pred cHHHHHHHHHHhcC---c---cHHHHHHHHHHHcCCHHHhhC-----ChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 99999988654321 1 234568899999999876655 357999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEE
Q 007952 162 GLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL 206 (583)
Q Consensus 162 gLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L 206 (583)
|||+.++..+.+.|++++++|+|||++||++.. +.+..++++.+
T Consensus 159 ~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~-i~~~~~~~~~~ 202 (204)
T PRK13538 159 AIDKQGVARLEALLAQHAEQGGMVILTTHQDLP-VASDKVRKLRL 202 (204)
T ss_pred cCCHHHHHHHHHHHHHHHHCCCEEEEEecChhh-hccCCceEEec
Confidence 999999999999999998778999999999753 54544666665
No 246
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=2.3e-39 Score=315.96 Aligned_cols=185 Identities=27% Similarity=0.452 Sum_probs=161.5
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCC---ccccccEEEEccCCCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---KSLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~---~~~~~~i~yv~Q~~~~~~~l 81 (583)
+++.+|+|+|+++++||+++|+|+||||||||+++|+|.. ++.+|+|.++|.++. ...++.++|++|++.+++.+
T Consensus 11 ~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~--~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~ 88 (201)
T cd03231 11 DGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLS--PPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTL 88 (201)
T ss_pred CCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCcEEEECCEecccccHHhhhheEEeccccccCCCc
Confidence 4567999999999999999999999999999999999965 367899999998764 23467899999999999999
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 161 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPts 161 (583)
|++||+.+.... ..+++++++++.+|+++..++ .+.+||||||||++||++|+.+|++++|||||+
T Consensus 89 tv~e~l~~~~~~---------~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrl~laral~~~p~llllDEPt~ 154 (201)
T cd03231 89 SVLENLRFWHAD---------HSDEQVEEALARVGLNGFEDR-----PVAQLSAGQQRRVALARLLLSGRPLWILDEPTT 154 (201)
T ss_pred CHHHHHHhhccc---------ccHHHHHHHHHHcCChhhhcC-----chhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Confidence 999999875311 123567889999999876655 357899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEE
Q 007952 162 GLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL 206 (583)
Q Consensus 162 gLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L 206 (583)
|||+.++..+.+.|++++++|+|+|++||++.. +...||+++.+
T Consensus 155 ~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~-~~~~~~~~~~~ 198 (201)
T cd03231 155 ALDKAGVARFAEAMAGHCARGGMVVLTTHQDLG-LSEAGARELDL 198 (201)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCchh-hhhccceeEec
Confidence 999999999999999998889999999999764 66789999887
No 247
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=2.3e-39 Score=315.65 Aligned_cols=180 Identities=30% Similarity=0.427 Sum_probs=154.1
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----c-ccccEEEEccCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----S-LKSKIGFVTQDDVLFP 79 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~-~~~~i~yv~Q~~~~~~ 79 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|....++.+|+|.+||+++.. . .++.++|++|++.+++
T Consensus 11 ~~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 90 (200)
T cd03217 11 GGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIP 90 (200)
T ss_pred CCEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhcc
Confidence 3467999999999999999999999999999999999964223678999999988743 1 2345999999999898
Q ss_pred CCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCC
Q 007952 80 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEP 159 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEP 159 (583)
.+|+++++. . ..+.||||||||++||++|+.+|++++||||
T Consensus 91 ~~~~~~~l~----------------------------------~-----~~~~LS~G~~qrv~laral~~~p~illlDEP 131 (200)
T cd03217 91 GVKNADFLR----------------------------------Y-----VNEGFSGGEKKRNEILQLLLLEPDLAILDEP 131 (200)
T ss_pred CccHHHHHh----------------------------------h-----ccccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 888887650 0 1247999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHh-hcCeEEEEcCCeEEEEcChhhHHHHHH
Q 007952 160 TSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFH-KFDKLILLGKGSLLYFGKASEAMAYFS 225 (583)
Q Consensus 160 tsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~-~~D~v~~L~~G~iv~~G~~~~~~~~f~ 225 (583)
|+|||+.++..+.+.|++++++|+|||++||++. .+.+ .+|++++|++|++++.|+.+ +.+++.
T Consensus 132 t~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~-~~~~~~~d~i~~l~~G~i~~~~~~~-~~~~~~ 196 (200)
T cd03217 132 DSGLDIDALRLVAEVINKLREEGKSVLIITHYQR-LLDYIKPDRVHVLYDGRIVKSGDKE-LALEIE 196 (200)
T ss_pred CccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhhCCEEEEEECCEEEEEccHH-HHhhhc
Confidence 9999999999999999999877999999999975 4555 79999999999999999554 555443
No 248
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.5e-40 Score=322.29 Aligned_cols=194 Identities=30% Similarity=0.505 Sum_probs=172.0
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc--------cccccEEEEccCCCCCCCCCH
Q 007952 12 GITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--------SLKSKIGFVTQDDVLFPHLTV 83 (583)
Q Consensus 12 ~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~--------~~~~~i~yv~Q~~~~~~~lTv 83 (583)
++++..+.-.++||-|+||||||||+|+|+|... |++|.|.+||..+.+ ..+++||||+||..+||++||
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~r--PdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tV 93 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTR--PDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTV 93 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCC--ccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEE
Confidence 5677777757999999999999999999999764 679999999986531 246889999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCC
Q 007952 84 KETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGL 163 (583)
Q Consensus 84 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgL 163 (583)
+.||.|+.... .....+++.+.||++|..+. ++..|||||||||+|+|||+++|++|++|||.+.|
T Consensus 94 rgNL~YG~~~~---------~~~~fd~iv~lLGI~hLL~R-----~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSL 159 (352)
T COG4148 94 RGNLRYGMWKS---------MRAQFDQLVALLGIEHLLDR-----YPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASL 159 (352)
T ss_pred ecchhhhhccc---------chHhHHHHHHHhCcHHHHhh-----CCCccCcchhhHHHHHHHHhcCCCeeeecCchhhc
Confidence 99999985321 23457889999999998875 57899999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 164 DSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 164 D~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
|-..+.+++-.|++|+++ ...|+.+||.+ .|+.+++|+|++|++||+...|+.+++.+
T Consensus 160 D~~RK~EilpylERL~~e~~IPIlYVSHS~-~Ev~RLAd~vV~le~GkV~A~g~~e~v~~ 218 (352)
T COG4148 160 DLPRKREILPYLERLRDEINIPILYVSHSL-DEVLRLADRVVVLENGKVKASGPLEEVWG 218 (352)
T ss_pred ccchhhHHHHHHHHHHHhcCCCEEEEecCH-HHHHhhhheEEEecCCeEEecCcHHHHhc
Confidence 999999999999999976 78999999996 57999999999999999999999998754
No 249
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=4.7e-39 Score=357.08 Aligned_cols=205 Identities=27% Similarity=0.469 Sum_probs=174.0
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEEC-Ccc---CCc-------cccccEEEEccC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN-DHP---YSK-------SLKSKIGFVTQD 74 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~-g~~---~~~-------~~~~~i~yv~Q~ 74 (583)
.+.+|+|+||++++||+++|+||||||||||+|+|+|... +.+|+|.++ |.+ +.. ..++.++|++|+
T Consensus 296 ~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~ 373 (520)
T TIGR03269 296 VVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLE--PTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQE 373 (520)
T ss_pred CceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEEecCCccccccccchhhHHHHhhhEEEEccC
Confidence 3579999999999999999999999999999999999653 578999996 532 211 234579999999
Q ss_pred CCCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCc-----cccccccCccCcccChHHHHHHHHHHHHHh
Q 007952 75 DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-----CQDTMIGGSFVRGVSGGERKRVCIGNEIII 149 (583)
Q Consensus 75 ~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-----~~~~~ig~~~~~~LSgGerqRv~ia~~L~~ 149 (583)
+.+++.+||+||+.+..... .+.++.+++++++++.+||.+ ..+ ..+.+|||||||||+||++|+.
T Consensus 374 ~~l~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~~~LSgGq~qrv~laral~~ 444 (520)
T TIGR03269 374 YDLYPHRTVLDNLTEAIGLE----LPDELARMKAVITLKMVGFDEEKAEEILD-----KYPDELSEGERHRVALAQVLIK 444 (520)
T ss_pred cccCCCCcHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCCCCCccchhhhh-----CChhhCCHHHHHHHHHHHHHhc
Confidence 99999999999998764321 233334567889999999975 233 3567999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 150 NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 150 ~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
+|++|+|||||+|||+.++..+++.|++++++ |.|||++||++. .+.++||++++|++|+++..|+++++.+
T Consensus 445 ~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 517 (520)
T TIGR03269 445 EPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMD-FVLDVCDRAALMRDGKIVKIGDPEEIVE 517 (520)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999999765 899999999975 5778999999999999999999887643
No 250
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=1.8e-39 Score=365.91 Aligned_cols=200 Identities=28% Similarity=0.416 Sum_probs=172.3
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~l 81 (583)
++++|+|+|+++++||.+||+|+||||||||+|+|+|... |.+|+|.+||.++++ .+++.|+||+|++.+|+.
T Consensus 353 ~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~--p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~- 429 (592)
T PRK10790 353 DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYP--LTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLAD- 429 (592)
T ss_pred CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCceEEECCEEhhhCCHHHHHhheEEEccCCccccc-
Confidence 3679999999999999999999999999999999999653 578999999998753 468899999999999987
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCccCcccChHHHHHHHHHHHHHhCCCEE
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-------CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLL 154 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~il 154 (583)
|++||+.++. ..+ +++++++++.+|+.+ -.||.+|. ....||||||||++|||||+.+|++|
T Consensus 430 Ti~~NI~~~~------~~~----d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e-~g~~LSGGqrQRialARaLl~~~~il 498 (592)
T PRK10790 430 TFLANVTLGR------DIS----EEQVWQALETVQLAELARSLPDGLYTPLGE-QGNNLSVGQKQLLALARVLVQTPQIL 498 (592)
T ss_pred hHHHHHHhCC------CCC----HHHHHHHHHHcCcHHHHHhccccccccccC-CCCCCCHHHHHHHHHHHHHHhCCCEE
Confidence 9999998852 122 234566677776543 34676764 45689999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 155 FLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
+||||||+||+.++..+.+.|+++.+ ++|+|++||+++ ..+.||+|++|++|+++..|+++++.+
T Consensus 499 llDEpts~LD~~t~~~i~~~l~~~~~-~~tvIivtHr~~--~l~~~D~ii~l~~G~i~~~G~~~~L~~ 563 (592)
T PRK10790 499 ILDEATANIDSGTEQAIQQALAAVRE-HTTLVVIAHRLS--TIVEADTILVLHRGQAVEQGTHQQLLA 563 (592)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecchH--HHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999864 699999999984 456799999999999999999999863
No 251
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-39 Score=325.84 Aligned_cols=200 Identities=34% Similarity=0.538 Sum_probs=160.9
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~l 81 (583)
++.+|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++.. ..++.++|++|+..+++ .
T Consensus 13 ~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~--~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~ 89 (236)
T cd03253 13 GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFY--DVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFN-D 89 (236)
T ss_pred CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccc--CCCCCEEEECCEEhhhCCHHHHHhhEEEECCCChhhc-c
Confidence 467999999999999999999999999999999999965 3679999999987642 24567999999998886 6
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccCccCcccChHHHHHHHHHHHHHhCCCEE
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC-------QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLL 154 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~il 154 (583)
||+||+.+... ..+..+ +.+.++..++.+. .++.. +..++.||||||||++||++|+.+|+++
T Consensus 90 tv~~nl~~~~~-----~~~~~~----~~~~~~~~~l~~~~~~l~~~~~~~~-~~~~~~LS~G~~~rl~la~aL~~~p~ll 159 (236)
T cd03253 90 TIGYNIRYGRP-----DATDEE----VIEAAKAAQIHDKIMRFPDGYDTIV-GERGLKLSGGEKQRVAIARAILKNPPIL 159 (236)
T ss_pred hHHHHHhhcCC-----CCCHHH----HHHHHHHcCcHHHHHhccccccchh-hcCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999987531 112211 2222333333221 11111 2346799999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 155 FLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
+|||||+|||+.++..+.+.|+++++ |+|||++||++.. + ..||++++|++|++++.|++++..
T Consensus 160 llDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~~-~-~~~d~~~~l~~g~i~~~~~~~~~~ 223 (236)
T cd03253 160 LLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLST-I-VNADKIIVLKDGRIVERGTHEELL 223 (236)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHH-H-HhCCEEEEEECCEEEeeCCHHHHh
Confidence 99999999999999999999999977 9999999999754 5 459999999999999999887654
No 252
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.4e-39 Score=325.58 Aligned_cols=211 Identities=25% Similarity=0.409 Sum_probs=171.9
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC-C--CcccEEEECCccCC--------ccccccEEEEcc
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYS--------KSLKSKIGFVTQ 73 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~-~--~~~G~I~~~g~~~~--------~~~~~~i~yv~Q 73 (583)
+++.+|+|+|+++++||+++|+|+||||||||+++|+|.... + +.+|+|.++|.++. ...++.++|++|
T Consensus 27 ~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q 106 (265)
T PRK14252 27 GGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQ 106 (265)
T ss_pred CCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEcc
Confidence 346799999999999999999999999999999999997542 1 26899999997652 124567999999
Q ss_pred CCCCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCE
Q 007952 74 DDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSL 153 (583)
Q Consensus 74 ~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~i 153 (583)
++.+++. ||+||+.+...... ....+..++++++.++.+++.+...... +..+..||||||||++||++|+.+|++
T Consensus 107 ~~~~~~~-tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~G~~qrv~laral~~~p~l 182 (265)
T PRK14252 107 KPNPFPK-SIFENVAYGLRIRG--VKRRSILEERVENALRNAALWDEVKDRL-GDLAFNLSGGQQQRLCIARALATDPEI 182 (265)
T ss_pred CCcCCcc-hHHHHHHhHHHHcC--CChHHHHHHHHHHHHHHcCCchhhhHHH-hCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 9999986 99999987653221 1112233456788888888742111111 234678999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 154 LFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 154 llLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
++|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+.||++++|++|+++..|+.++..
T Consensus 183 lllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 248 (265)
T PRK14252 183 LLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNMQ-QAARVSDYTAYMYMGELIEFGATDTIF 248 (265)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999976 689999999964 577899999999999999999987763
No 253
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-39 Score=358.73 Aligned_cols=202 Identities=23% Similarity=0.435 Sum_probs=170.9
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-----cccccEEEEccC---CCCCC
Q 007952 8 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-----SLKSKIGFVTQD---DVLFP 79 (583)
Q Consensus 8 ~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-----~~~~~i~yv~Q~---~~~~~ 79 (583)
.+|+|+|+++++||+++|+||||||||||+|+|+|... +++|+|.++|+++.+ ..++.+|||+|+ ..+++
T Consensus 277 ~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~--p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 354 (510)
T PRK09700 277 KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDK--RAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFP 354 (510)
T ss_pred CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc--CCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcC
Confidence 48999999999999999999999999999999999653 578999999987642 234679999998 46889
Q ss_pred CCCHHHHHHHHHHcC---CCC--C-CCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccChHHHHHHHHHHHHHhCCC
Q 007952 80 HLTVKETLTYAALLR---LPN--T-LTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPS 152 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~---~~~--~-~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ 152 (583)
.+||+||+.+....+ ... . .+.++.+++++++++.+|+. +..++ .+.+|||||||||+||++|+.+|+
T Consensus 355 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~LSgGq~qrv~lAral~~~p~ 429 (510)
T PRK09700 355 NFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQ-----NITELSGGNQQKVLISKWLCCCPE 429 (510)
T ss_pred CCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccC-----ccccCChHHHHHHHHHHHHhcCCC
Confidence 999999998753211 000 0 12233345688999999996 55665 457999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcCh
Q 007952 153 LLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 217 (583)
Q Consensus 153 illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 217 (583)
+|+|||||+|||+.++..+++.|++++++|+|||++|||+. .+.+.||++++|++|+++..++.
T Consensus 430 lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~-~~~~~~d~i~~l~~G~i~~~~~~ 493 (510)
T PRK09700 430 VIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELP-EIITVCDRIAVFCEGRLTQILTN 493 (510)
T ss_pred EEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEECCEEEEEecC
Confidence 99999999999999999999999999888999999999975 57789999999999999988866
No 254
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=3.9e-39 Score=317.36 Aligned_cols=190 Identities=24% Similarity=0.346 Sum_probs=164.2
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-cccccEEEEccCCCCCCCCCH
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-SLKSKIGFVTQDDVLFPHLTV 83 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-~~~~~i~yv~Q~~~~~~~lTv 83 (583)
+++.+++|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. ..++.++|++|++.+++.+|+
T Consensus 22 ~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~ 99 (214)
T PRK13543 22 NEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLH--VESGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLST 99 (214)
T ss_pred CCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCCeeEEECCEEccchhhhhceEEeecCcccccCCcH
Confidence 45679999999999999999999999999999999999653 578999999987753 234569999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCC
Q 007952 84 KETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGL 163 (583)
Q Consensus 84 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgL 163 (583)
+||+.+....+. . ..+++++++++.++|.+..++. +..||||||||++||++++.+|++++|||||+||
T Consensus 100 ~e~l~~~~~~~~---~---~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt~~L 168 (214)
T PRK13543 100 LENLHFLCGLHG---R---RAKQMPGSALAIVGLAGYEDTL-----VRQLSAGQKKRLALARLWLSPAPLWLLDEPYANL 168 (214)
T ss_pred HHHHHHHHHhcC---C---cHHHHHHHHHHHcCChhhccCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 999988654321 1 1234567889999998766654 5789999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcC
Q 007952 164 DSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 208 (583)
Q Consensus 164 D~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~ 208 (583)
|+.++..+.+.|++++++|+|||++||++. ++.+.||++++++.
T Consensus 169 D~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~~~i~~l~~ 212 (214)
T PRK13543 169 DLEGITLVNRMISAHLRGGGAALVTTHGAY-AAPPVRTRMLTLEA 212 (214)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecChh-hhhhhcceEEEEee
Confidence 999999999999999888999999999975 58899999999863
No 255
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=2.1e-39 Score=330.14 Aligned_cols=200 Identities=22% Similarity=0.406 Sum_probs=168.1
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~l 81 (583)
.+.+|+|+|++|++||+++|+||||||||||+++|+|... .+|+|+++|.++.. .+++.++||+|++.+|+.
T Consensus 16 ~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~---~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~~- 91 (275)
T cd03289 16 GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSG- 91 (275)
T ss_pred CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEEhhhCCHHHHhhhEEEECCCcccchh-
Confidence 4579999999999999999999999999999999999753 47999999988642 356789999999999985
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccC------ccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGG------SFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~------~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
||+||+.... ..+ .+++.+.++.+||.+..+...++ +....||||||||++|||||+.+|++|+
T Consensus 92 tv~~nl~~~~------~~~----~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~ill 161 (275)
T cd03289 92 TFRKNLDPYG------KWS----DEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILL 161 (275)
T ss_pred hHHHHhhhcc------CCC----HHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999996321 112 23466778888987655543221 1235699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
|||||+|||+.+...+.+.|+++. +++|||+++|++. .+. .||+|++|++|++++.|++++++.
T Consensus 162 lDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~~-~i~-~~dri~vl~~G~i~~~g~~~~l~~ 225 (275)
T cd03289 162 LDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRIE-AML-ECQRFLVIEENKVRQYDSIQKLLN 225 (275)
T ss_pred EECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCHH-HHH-hCCEEEEecCCeEeecCCHHHHhh
Confidence 999999999999999999999875 4899999999974 454 599999999999999999999864
No 256
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=7.4e-40 Score=367.21 Aligned_cols=203 Identities=34% Similarity=0.552 Sum_probs=173.5
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~l 81 (583)
++++|+|+|+++++||.+||+||||||||||+|.|.|... +.+|+|.+||.++++ .+|+.|+||+||+.+|. -
T Consensus 341 ~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~--~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~-~ 417 (567)
T COG1132 341 KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYD--PTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFS-G 417 (567)
T ss_pred CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC--CCCCeEEECCEehhhcCHHHHHHhccEEcccceeec-c
Confidence 5789999999999999999999999999999999998543 578999999998753 57899999999999998 5
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHH-----HHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEE
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAI-----DVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFL 156 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~-----~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illL 156 (583)
||+||+.++.. ..++++..+.++ +.++.+ .+..||.+| +....||||||||++||||++.+|++|+|
T Consensus 418 TI~~NI~~g~~-----~at~eei~~a~k~a~~~d~I~~l--p~g~dt~vg-e~G~~LSgGQrQrlaiARall~~~~ILIL 489 (567)
T COG1132 418 TIRENIALGRP-----DATDEEIEEALKLANAHEFIANL--PDGYDTIVG-ERGVNLSGGQRQRLAIARALLRNPPILIL 489 (567)
T ss_pred cHHHHHhcCCC-----CCCHHHHHHHHHHhChHHHHHhC--cccccceec-CCCccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999998631 134444443332 333333 456789888 45678999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 157 DEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 157 DEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
|||||+||+.+...+.+.++++. +++|+++++|+++. + +.+|+|++|++|++++.|+++++.+
T Consensus 490 DEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRlst-i-~~aD~IiVl~~G~i~e~G~h~eLl~ 552 (567)
T COG1132 490 DEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLST-I-KNADRIIVLDNGRIVERGTHEELLA 552 (567)
T ss_pred eccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHhH-H-HhCCEEEEEECCEEEEecCHHHHHH
Confidence 99999999999999999999887 57899999999854 5 4599999999999999999999876
No 257
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=9.2e-40 Score=375.57 Aligned_cols=199 Identities=31% Similarity=0.487 Sum_probs=168.8
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~l 81 (583)
++++|+|+|++|++||.+||+||||||||||+|+|+|... +.+|+|.+||.++.+ .+|+.+|||+|++.+|+.
T Consensus 491 ~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~--p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g- 567 (710)
T TIGR03796 491 EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQ--PWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEG- 567 (710)
T ss_pred CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhc-
Confidence 4679999999999999999999999999999999999653 678999999998753 468899999999999975
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCccCcccChHHHHHHHHHHHHHhCCCEE
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-------RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLL 154 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~il 154 (583)
|++||+.++. | ..+.+ ++.++++..|+. +-.||.+|. ...+||||||||++|||||+++|++|
T Consensus 568 Ti~eNi~l~~----~-~~~~~----~i~~al~~~~l~~~i~~lp~gl~t~i~e-~G~~LSGGQrQRiaLARall~~p~il 637 (710)
T TIGR03796 568 TVRDNLTLWD----P-TIPDA----DLVRACKDAAIHDVITSRPGGYDAELAE-GGANLSGGQRQRLEIARALVRNPSIL 637 (710)
T ss_pred cHHHHhhCCC----C-CCCHH----HHHHHHHHhCCHHHHHhCcCcccceecc-CCCCCCHHHHHHHHHHHHHhhCCCEE
Confidence 9999998641 1 12332 344555555543 345677764 35789999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 155 FLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
+||||||+||+.++.++++.|++ .++|+|+++|+++. .+.||+|++|++|++++.|+++++++
T Consensus 638 iLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~~--i~~~D~Iivl~~G~i~~~G~~~~Ll~ 700 (710)
T TIGR03796 638 ILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLST--IRDCDEIIVLERGKVVQRGTHEELWA 700 (710)
T ss_pred EEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHHH--HHhCCEEEEEeCCEEEEecCHHHHHH
Confidence 99999999999999999999986 48999999999753 56799999999999999999999864
No 258
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=1.4e-39 Score=364.87 Aligned_cols=200 Identities=34% Similarity=0.606 Sum_probs=172.9
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~lT 82 (583)
+++|+|+|+++++||.++|+||||||||||+|+|+|.. ++.+|+|.+||.++.+ .+|+.++||+||+.+|+. |
T Consensus 353 ~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~--~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-t 429 (574)
T PRK11160 353 QPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAW--DPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSA-T 429 (574)
T ss_pred CcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCC--CCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcc-c
Confidence 57999999999999999999999999999999999965 3678999999998753 467889999999999975 9
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCcc------ccccccCccCcccChHHHHHHHHHHHHHhCCCEEEE
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC------QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFL 156 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~------~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illL 156 (583)
++||+.++. + ..+ ++++.+.++..++.+. .||.+|. ....||||||||++|||+|+++|++|+|
T Consensus 430 i~~Ni~~~~----~-~~~----~~~i~~al~~~~l~~~i~~p~GldT~vge-~g~~LSgGqrqRialARall~~~~ilil 499 (574)
T PRK11160 430 LRDNLLLAA----P-NAS----DEALIEVLQQVGLEKLLEDDKGLNAWLGE-GGRQLSGGEQRRLGIARALLHDAPLLLL 499 (574)
T ss_pred HHHHhhcCC----C-ccC----HHHHHHHHHHcCCHHHHcCccccCchhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999998752 1 122 3456777888887643 4677764 3678999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 157 DEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 157 DEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
||||++||+.++..+.+.|+++. +++|+|+++|+++. .+.||+|++|++|++++.|+.+++.+
T Consensus 500 DE~ts~lD~~t~~~i~~~l~~~~-~~~tviiitHr~~~--~~~~d~i~~l~~G~i~~~g~~~~l~~ 562 (574)
T PRK11160 500 DEPTEGLDAETERQILELLAEHA-QNKTVLMITHRLTG--LEQFDRICVMDNGQIIEQGTHQELLA 562 (574)
T ss_pred eCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecChhH--HHhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 99999999999999999999986 48999999999864 46699999999999999999998764
No 259
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-38 Score=321.64 Aligned_cols=198 Identities=23% Similarity=0.324 Sum_probs=171.7
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHH
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVK 84 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~ 84 (583)
..+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|. +++++|+..+.+.+|+.
T Consensus 35 ~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~--p~~G~I~~~g~---------~~~~~~~~~~~~~~tv~ 103 (264)
T PRK13546 35 KTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLS--PTVGKVDRNGE---------VSVIAISAGLSGQLTGI 103 (264)
T ss_pred CceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCE---------EeEEecccCCCCCCcHH
Confidence 45679999999999999999999999999999999999653 67899999984 45778887788889999
Q ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCC
Q 007952 85 ETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLD 164 (583)
Q Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD 164 (583)
||+.+..... ..+.++..+.++++++.+++.+..++ .+++||||||||++||++|+.+|++|+|||||+|||
T Consensus 104 enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD 175 (264)
T PRK13546 104 ENIEFKMLCM---GFKRKEIKAMTPKIIEFSELGEFIYQ-----PVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGD 175 (264)
T ss_pred HHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcC-----CcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCC
Confidence 9998764432 23345555667888999999876665 457999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 165 STTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 165 ~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
+.++..+++.|++++++|+|||++||++. ++.+.||++++|++|+++..|+++++.+
T Consensus 176 ~~~~~~l~~~L~~~~~~g~tiIiisH~~~-~i~~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (264)
T PRK13546 176 QTFAQKCLDKIYEFKEQNKTIFFVSHNLG-QVRQFCTKIAWIEGGKLKDYGELDDVLP 232 (264)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHHcCEEEEEECCEEEEeCCHHHHHH
Confidence 99999999999999878999999999964 5778899999999999999999888765
No 260
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.8e-39 Score=306.98 Aligned_cols=159 Identities=33% Similarity=0.632 Sum_probs=144.9
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc---cccccEEEEccCCCCCCCCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---SLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~---~~~~~i~yv~Q~~~~~~~lT 82 (583)
.+.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. ..++.++|++|++.+++.+|
T Consensus 12 ~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 89 (173)
T cd03230 12 KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLK--PDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLT 89 (173)
T ss_pred CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEcccchHhhhccEEEEecCCccccCCc
Confidence 3579999999999999999999999999999999999653 578999999987642 34577999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCC
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 162 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsg 162 (583)
++||+. ||||||||++||++|+.+|++++|||||+|
T Consensus 90 v~~~~~--------------------------------------------LS~G~~qrv~laral~~~p~illlDEPt~~ 125 (173)
T cd03230 90 VRENLK--------------------------------------------LSGGMKQRLALAQALLHDPELLILDEPTSG 125 (173)
T ss_pred HHHHhh--------------------------------------------cCHHHHHHHHHHHHHHcCCCEEEEeCCccC
Confidence 999863 899999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeE
Q 007952 163 LDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 211 (583)
Q Consensus 163 LD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~i 211 (583)
||+.++..+.+.|++++++|.|+|++||++. ++.+.+|++++|++|++
T Consensus 126 LD~~~~~~l~~~l~~~~~~g~tiii~th~~~-~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 126 LDPESRREFWELLRELKKEGKTILLSSHILE-EAERLCDRVAILNNGRI 173 (173)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEeCCCC
Confidence 9999999999999999888999999999975 57778999999999974
No 261
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.5e-39 Score=291.59 Aligned_cols=206 Identities=32% Similarity=0.526 Sum_probs=181.0
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCC----------ccccccEEEEcc
Q 007952 4 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----------KSLKSKIGFVTQ 73 (583)
Q Consensus 4 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~----------~~~~~~i~yv~Q 73 (583)
++..++|.||+++.++||.+.++||||||||||+|.|.= +. -+.+|+..+.|...+ ..+|+.+|+|+|
T Consensus 12 yg~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnl-le-~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfq 89 (242)
T COG4161 12 YGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNL-LE-MPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQ 89 (242)
T ss_pred cccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHH-Hh-CCCCCeEEecccccccccCccHHHHHHHHHhhhhhhh
Confidence 566789999999999999999999999999999999984 33 357899999876432 146789999999
Q ss_pred CCCCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCE
Q 007952 74 DDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSL 153 (583)
Q Consensus 74 ~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~i 153 (583)
+-.++|.+||.|||.-+. +|. ..+++++.+.++.++++.+.|.+.+|. ++-.|||||+|||+|||||+.+|++
T Consensus 90 qy~lwphltv~enlieap-~kv-~gl~~~qa~~~a~ellkrlrl~~~adr-----~plhlsggqqqrvaiaralmmkpqv 162 (242)
T COG4161 90 QYNLWPHLTVQENLIEAP-CRV-LGLSKDQALARAEKLLKRLRLKPYADR-----YPLHLSGGQQQRVAIARALMMEPQV 162 (242)
T ss_pred hhccCchhHHHHHHHhhh-HHH-hCCCHHHHHHHHHHHHHHhcccccccc-----CceecccchhhhHHHHHHHhcCCcE
Confidence 999999999999997643 222 246788888999999999999998886 5679999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhh
Q 007952 154 LFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 219 (583)
Q Consensus 154 llLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 219 (583)
|++||||++|||+-..++++++++++..|.|-+++||... ...+.+.+|+.|.+|+|++.|+.+.
T Consensus 163 llfdeptaaldpeitaqvv~iikel~~tgitqvivthev~-va~k~as~vvyme~g~ive~g~a~~ 227 (242)
T COG4161 163 LLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVE-VARKTASRVVYMENGHIVEQGDASC 227 (242)
T ss_pred EeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehh-HHHhhhhheEeeecCeeEeecchhh
Confidence 9999999999999999999999999999999999999864 3567889999999999999998753
No 262
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=4.1e-39 Score=355.87 Aligned_cols=205 Identities=23% Similarity=0.421 Sum_probs=173.5
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-----cccccEEEEccCC---CCCC
Q 007952 8 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-----SLKSKIGFVTQDD---VLFP 79 (583)
Q Consensus 8 ~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-----~~~~~i~yv~Q~~---~~~~ 79 (583)
.+|+|+|+++++||+++|+||||||||||+|+|+|... +++|+|.++|+++.. ..++.+|||+|++ .+++
T Consensus 266 ~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~--p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~ 343 (501)
T PRK10762 266 PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALP--RTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVL 343 (501)
T ss_pred CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcC
Confidence 46999999999999999999999999999999999753 578999999987642 2346799999995 5788
Q ss_pred CCCHHHHHHHHHHcCCC---CCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 80 HLTVKETLTYAALLRLP---NTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~---~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
.+||.||+.+....... ...+.++.+++++++++.+||. +..++ .+.+|||||||||+||++|+.+|++|+
T Consensus 344 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~LSgGekqrv~lA~al~~~p~lll 418 (501)
T PRK10762 344 GMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQ-----AIGLLSGGNQQKVAIARGLMTRPKVLI 418 (501)
T ss_pred CCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccC-----chhhCCHHHHHHHHHHHHHhhCCCEEE
Confidence 99999999875321110 0122334456788999999995 55554 457999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 220 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 220 (583)
|||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.||++++|++|+++..|+++++
T Consensus 419 LDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 482 (501)
T PRK10762 419 LDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMP-EVLGMSDRILVMHEGRISGEFTREQA 482 (501)
T ss_pred EcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEECCEEEEEeccccC
Confidence 99999999999999999999999888999999999975 57889999999999999999987764
No 263
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=6e-39 Score=323.35 Aligned_cols=191 Identities=26% Similarity=0.468 Sum_probs=163.1
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCC--C
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHL--T 82 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~l--T 82 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++| +..++|++|++.+++.+ |
T Consensus 15 ~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~~-------~~~i~~v~q~~~~~~~l~~~ 85 (251)
T PRK09544 15 GQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVA--PDEGVIKRNG-------KLRIGYVPQKLYLDTTLPLT 85 (251)
T ss_pred CCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECC-------ccCEEEeccccccccccChh
Confidence 35679999999999999999999999999999999999753 5789999987 24699999998877764 7
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCC
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 162 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsg 162 (583)
+.+++.+. + ... .+++.++++.+|+.+..++. +..||||||||++||++|+.+|++++|||||+|
T Consensus 86 ~~~~~~~~-----~-~~~----~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq~qrv~laral~~~p~lllLDEPt~~ 150 (251)
T PRK09544 86 VNRFLRLR-----P-GTK----KEDILPALKRVQAGHLIDAP-----MQKLSGGETQRVLLARALLNRPQLLVLDEPTQG 150 (251)
T ss_pred HHHHHhcc-----c-ccc----HHHHHHHHHHcCChHHHhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 88776431 1 111 24577899999998776653 579999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 163 LDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 163 LD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|+ |+++..|++++..
T Consensus 151 LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~-~i~~~~d~i~~l~-~~i~~~g~~~~~~ 208 (251)
T PRK09544 151 VDVNGQVALYDLIDQLRRELDCAVLMVSHDLH-LVMAKTDEVLCLN-HHICCSGTPEVVS 208 (251)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEC-CceEeeCCHHHHh
Confidence 9999999999999999876 899999999975 5778899999996 4799999988753
No 264
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=7.1e-39 Score=354.04 Aligned_cols=206 Identities=21% Similarity=0.385 Sum_probs=173.2
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-----cccccEEEEccCC---CC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-----SLKSKIGFVTQDD---VL 77 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-----~~~~~i~yv~Q~~---~~ 77 (583)
++.+|+|+||++++||+++|+||||||||||+|+|+|... |+.+|+|.++|+++.. ..++.++|++|+. .+
T Consensus 272 ~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~-p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l 350 (500)
T TIGR02633 272 HRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYP-GKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGI 350 (500)
T ss_pred cccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCC-CCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCc
Confidence 4579999999999999999999999999999999999753 3468999999987642 2356799999995 58
Q ss_pred CCCCCHHHHHHHHHHcCCC--CCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCcccChHHHHHHHHHHHHHhCCCEE
Q 007952 78 FPHLTVKETLTYAALLRLP--NTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLL 154 (583)
Q Consensus 78 ~~~lTv~e~l~~~~~~~~~--~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~il 154 (583)
++.+||+||+.+...-... ......+.+++++++++.+++.+ ..++ .+..||||||||++||++|+.+|++|
T Consensus 351 ~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~LSgGqkqrv~la~al~~~p~ll 425 (500)
T TIGR02633 351 VPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFL-----PIGRLSGGNQQKAVLAKMLLTNPRVL 425 (500)
T ss_pred CCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccC-----ccccCCHHHHHHHHHHHHHhhCCCEE
Confidence 8999999999875321110 01223444567889999999964 4454 45799999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChh
Q 007952 155 FLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 218 (583)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 218 (583)
+|||||+|||+.++..+++.|++++++|.|||++|||+. ++.++||++++|++|+++..++.+
T Consensus 426 lLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~v~~l~~G~i~~~~~~~ 488 (500)
T TIGR02633 426 ILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELA-EVLGLSDRVLVIGEGKLKGDFVNH 488 (500)
T ss_pred EEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEEccc
Confidence 999999999999999999999999888999999999975 578899999999999999877654
No 265
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7e-40 Score=344.66 Aligned_cols=201 Identities=33% Similarity=0.572 Sum_probs=173.4
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~l 81 (583)
+.++|+|+|+++++||.+||+|+||||||||++.|.|.. .+.+|+|.+||.++.. ..++.+++++|...+|.+
T Consensus 350 ~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~--~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~- 426 (573)
T COG4987 350 QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAW--DPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSG- 426 (573)
T ss_pred ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhcc--CCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHH-
Confidence 347999999999999999999999999999999999965 3679999999988742 367789999999999986
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccc-------cccccCccCcccChHHHHHHHHHHHHHhCCCEE
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ-------DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLL 154 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~il 154 (583)
|+++||..+. |. .+. +.+.++++++||++.. |+.+| +..+.||||||||++|||+|++|.+++
T Consensus 427 Tlr~NL~lA~----~~-AsD----Eel~~aL~qvgL~~l~~~~p~gl~t~lg-e~G~~LSGGE~rRLAlAR~LL~dapl~ 496 (573)
T COG4987 427 TLRDNLRLAN----PD-ASD----EELWAALQQVGLEKLLESAPDGLNTWLG-EGGRRLSGGERRRLALARALLHDAPLW 496 (573)
T ss_pred HHHHHHhhcC----CC-CCH----HHHHHHHHHcCHHHHHHhChhhhhchhc-cCCCcCCchHHHHHHHHHHHHcCCCeE
Confidence 9999998763 22 233 4466778888886543 44555 456899999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 155 FLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
+|||||.|||+.+..++++.|.+-++ |||+|++||+... .+.||+|++|++|++++.|.+++++.
T Consensus 497 lLDEPTegLD~~TE~~vL~ll~~~~~-~kTll~vTHrL~~--le~~drIivl~~Gkiie~G~~~~Ll~ 561 (573)
T COG4987 497 LLDEPTEGLDPITERQVLALLFEHAE-GKTLLMVTHRLRG--LERMDRIIVLDNGKIIEEGTHAELLA 561 (573)
T ss_pred EecCCcccCChhhHHHHHHHHHHHhc-CCeEEEEeccccc--HhhcCEEEEEECCeeeecCCHHhhhc
Confidence 99999999999999999999998765 9999999999764 57899999999999999999999865
No 266
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=2.1e-39 Score=371.64 Aligned_cols=199 Identities=30% Similarity=0.534 Sum_probs=166.9
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~l 81 (583)
++++|+|+|+++++||.++|+||||||||||+|+|+|... +.+|+|.+||+++.+ .++++++||+||+.+|+.
T Consensus 493 ~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~--p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~g- 569 (711)
T TIGR00958 493 DVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQ--PTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSG- 569 (711)
T ss_pred CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccC--CCCCEEEECCEEHHhcCHHHHHhhceEEecCcccccc-
Confidence 4679999999999999999999999999999999999653 678999999998753 467889999999999975
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCccCcccChHHHHHHHHHHHHHhCCCEE
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-------RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLL 154 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~il 154 (583)
|++|||.++. + ..+ ++++.++++..++. +-.||.+|+ ...+||||||||++|||+++++|+|+
T Consensus 570 TIreNI~~g~----~-~~~----~e~i~~al~~a~l~~~i~~lp~GldT~ige-~G~~LSGGQkQRlalARALl~~p~IL 639 (711)
T TIGR00958 570 SVRENIAYGL----T-DTP----DEEIMAAAKAANAHDFIMEFPNGYDTEVGE-KGSQLSGGQKQRIAIARALVRKPRVL 639 (711)
T ss_pred CHHHHHhcCC----C-CCC----HHHHHHHHHHcCCHHHHHhCCCccCCcccC-CCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999998752 1 122 23355566666554 335677764 35789999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 155 FLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
+||||||+||+.++..+.+ .. ..+++|+|+++|+++ ..+.+|+|++|++|++++.|+++++.+
T Consensus 640 ILDEpTSaLD~~te~~i~~-~~--~~~~~TvIiItHrl~--~i~~aD~IivL~~G~ive~Gt~~eL~~ 702 (711)
T TIGR00958 640 ILDEATSALDAECEQLLQE-SR--SRASRTVLLIAHRLS--TVERADQILVLKKGSVVEMGTHKQLME 702 (711)
T ss_pred EEEccccccCHHHHHHHHH-hh--ccCCCeEEEEeccHH--HHHhCCEEEEEECCEEEEeeCHHHHHh
Confidence 9999999999999999988 22 235899999999975 357799999999999999999999864
No 267
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=2.4e-39 Score=371.10 Aligned_cols=202 Identities=31% Similarity=0.534 Sum_probs=171.7
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~l 81 (583)
++++|+|+|+++++||.+||+||||||||||+|+|+|... +.+|+|.+||.++.+ .+|+.++||+|++.+|+.
T Consensus 477 ~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~--p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~- 553 (694)
T TIGR03375 477 ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQ--PTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYG- 553 (694)
T ss_pred CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhh-
Confidence 4679999999999999999999999999999999999653 678999999998753 468899999999999986
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCccCcccChHHHHHHHHHHHHHhCCCEE
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL-------ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLL 154 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~il 154 (583)
|++||+.++. + ..+.+ ++.++++..++ .+-.||.+|+ ....||||||||++|||||+++|+++
T Consensus 554 TI~eNi~~~~----~-~~~~~----~i~~a~~~~~l~~~i~~lp~gl~T~i~e-~G~~LSgGQrQRlalARall~~p~il 623 (694)
T TIGR03375 554 TLRDNIALGA----P-YADDE----EILRAAELAGVTEFVRRHPDGLDMQIGE-RGRSLSGGQRQAVALARALLRDPPIL 623 (694)
T ss_pred hHHHHHhCCC----C-CCCHH----HHHHHHHHcChHHHHHhCcccccceecC-CCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999998742 1 12333 34444554444 3445777764 36789999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHHH
Q 007952 155 FLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAY 223 (583)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~ 223 (583)
+||||||+||+.++..+.+.|+++.+ ++|+|+++|+++ ..+.||+|++|++|++++.|+++++++.
T Consensus 624 iLDE~Ts~LD~~te~~i~~~l~~~~~-~~T~iiItHrl~--~~~~~D~iivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 624 LLDEPTSAMDNRSEERFKDRLKRWLA-GKTLVLVTHRTS--LLDLVDRIIVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCEEEEEeCCEEEeeCCHHHHHHH
Confidence 99999999999999999999999864 899999999985 3578999999999999999999998653
No 268
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=9.5e-39 Score=310.79 Aligned_cols=184 Identities=26% Similarity=0.408 Sum_probs=157.2
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc---cccccEEEEccCCCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---SLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~---~~~~~i~yv~Q~~~~~~~l 81 (583)
+++.+|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++.. ..++.++|++|++.+++.+
T Consensus 11 ~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~--~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~ 88 (198)
T TIGR01189 11 GERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLL--RPDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPEL 88 (198)
T ss_pred CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC--CCCccEEEECCEEcccchHHhhhheEEeccCcccccCC
Confidence 4567999999999999999999999999999999999965 3678999999987642 2456799999999899999
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 161 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPts 161 (583)
|+.||+.+....+. . + ++++.++++.+|+.+..++. +.+||||||||++||++++.+|++++|||||+
T Consensus 89 tv~~~l~~~~~~~~-----~-~-~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~llllDEPt~ 156 (198)
T TIGR01189 89 SALENLHFWAAIHG-----G-A-QRTIEDALAAVGLTGFEDLP-----AAQLSAGQQRRLALARLWLSRAPLWILDEPTT 156 (198)
T ss_pred cHHHHHHHHHHHcC-----C-c-HHHHHHHHHHcCCHHHhcCC-----hhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 99999987653321 1 1 34578899999998766653 56899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEE
Q 007952 162 GLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLIL 205 (583)
Q Consensus 162 gLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~ 205 (583)
|||+.++..+.+.|++++++|.|||++||++.. -.+|+++.
T Consensus 157 ~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~---~~~~~~~~ 197 (198)
T TIGR01189 157 ALDKAGVALLAGLLRAHLARGGIVLLTTHQDLG---LVEARELR 197 (198)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEEccccc---ccceEEee
Confidence 999999999999999998889999999999753 24677654
No 269
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=4.5e-39 Score=318.31 Aligned_cols=194 Identities=27% Similarity=0.461 Sum_probs=160.4
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~l 81 (583)
++.+|+|+||++++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++.+ ..++.++|++|++.+++ .
T Consensus 16 ~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~--~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~ 92 (221)
T cd03244 16 LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLV--ELSSGSILIDGVDISKIGLHDLRSRISIIPQDPVLFS-G 92 (221)
T ss_pred CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCC--CCCCCEEEECCEEhHhCCHHHHhhhEEEECCCCcccc-c
Confidence 357999999999999999999999999999999999965 3678999999987642 34678999999998776 5
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccc-------cccCccCcccChHHHHHHHHHHHHHhCCCEE
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDT-------MIGGSFVRGVSGGERKRVCIGNEIIINPSLL 154 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~-------~ig~~~~~~LSgGerqRv~ia~~L~~~p~il 154 (583)
||+||+.+.. ... .+++.+.++.+++.+..++ .. +..+.+||||||||++||++|+.+|+++
T Consensus 93 tv~enl~~~~------~~~----~~~~~~~~~~~~l~~~~~~l~~~l~~~~-~~~~~~LS~G~~qr~~laral~~~p~ll 161 (221)
T cd03244 93 TIRSNLDPFG------EYS----DEELWQALERVGLKEFVESLPGGLDTVV-EEGGENLSVGQRQLLCLARALLRKSKIL 161 (221)
T ss_pred hHHHHhCcCC------CCC----HHHHHHHHHHhCcHHHHHhccccccccc-ccCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999986421 112 2335556666666543321 11 2356899999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcC
Q 007952 155 FLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 216 (583)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 216 (583)
+|||||+|||+.++..+.+.|+++++ +.|||++||++.. +. .||++++|++|++++.|+
T Consensus 162 llDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~-~~-~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 162 VLDEATASVDPETDALIQKTIREAFK-DCTVLTIAHRLDT-II-DSDRILVLDKGRVVEFDS 220 (221)
T ss_pred EEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHHH-Hh-hCCEEEEEECCeEEecCC
Confidence 99999999999999999999999864 6899999999754 54 599999999999998876
No 270
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.3e-39 Score=372.03 Aligned_cols=206 Identities=33% Similarity=0.581 Sum_probs=172.7
Q ss_pred CccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCC
Q 007952 3 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLF 78 (583)
Q Consensus 3 ~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~ 78 (583)
+..+..||+|+|+.|++||.+||+|||||||||++++|.+.. . |.+|+|++||.++.. .+|.+||.|.|+|.+|
T Consensus 362 sRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~Rfy-d-P~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF 439 (1228)
T KOG0055|consen 362 SRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFY-D-PTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLF 439 (1228)
T ss_pred CCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhc-C-CCCceEEEcCccchhcchHHHHhhcCeeeechhhh
Confidence 344668999999999999999999999999999999999854 3 579999999998853 5688999999999888
Q ss_pred CCCCHHHHHHHHHHcCCCCCCCHHHHHHHH-----HHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCE
Q 007952 79 PHLTVKETLTYAALLRLPNTLTKQQKEKRA-----IDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSL 153 (583)
Q Consensus 79 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v-----~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~i 153 (583)
. .|++||+.|+. | +.+.++..+.+ .+.+. .|.+-.+|.+|.+.+ +||||||||++|||||+.||+|
T Consensus 440 ~-~tI~eNI~~G~----~-dat~~~i~~a~k~ana~~fi~--~lp~g~~T~vge~g~-qLSGGQKQRIAIARalv~~P~I 510 (1228)
T KOG0055|consen 440 A-TTIRENIRYGK----P-DATREEIEEAAKAANAHDFIL--KLPDGYDTLVGERGV-QLSGGQKQRIAIARALVRNPKI 510 (1228)
T ss_pred c-ccHHHHHhcCC----C-cccHHHHHHHHHHccHHHHHH--hhHHhhcccccCCCC-CCChHHHHHHHHHHHHHhCCCE
Confidence 6 59999999862 1 23344333322 22232 356667888886543 4999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 154 LFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 154 llLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
|+||||||+||+.+...+.+.|++.. +|+|.|+++|+.+. + +.+|+|++|++|++++.|+++|+++
T Consensus 511 LLLDEaTSaLD~~se~~Vq~ALd~~~-~grTTivVaHRLSt-I-rnaD~I~v~~~G~IvE~G~h~ELi~ 576 (1228)
T KOG0055|consen 511 LLLDEATSALDAESERVVQEALDKAS-KGRTTIVVAHRLST-I-RNADKIAVMEEGKIVEQGTHDELIA 576 (1228)
T ss_pred EEecCcccccCHHHHHHHHHHHHHhh-cCCeEEEEeeehhh-h-hccCEEEEEECCEEEEecCHHHHHh
Confidence 99999999999999999999998865 59999999999764 5 5599999999999999999999875
No 271
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.3e-39 Score=354.38 Aligned_cols=205 Identities=20% Similarity=0.383 Sum_probs=173.1
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-----cccccEEEEccCC---CCCC
Q 007952 8 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-----SLKSKIGFVTQDD---VLFP 79 (583)
Q Consensus 8 ~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-----~~~~~i~yv~Q~~---~~~~ 79 (583)
.+++|+|+++++||+++|+||||||||||+|+|+|.. ++.+|+|.++|+++.. ..++.++|++|++ .+++
T Consensus 267 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~--~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 344 (501)
T PRK11288 267 GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGAT--RRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIP 344 (501)
T ss_pred CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCC--cCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcC
Confidence 5899999999999999999999999999999999965 3578999999987642 2346799999996 4889
Q ss_pred CCCHHHHHHHHHHcCC-CCC--CCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 80 HLTVKETLTYAALLRL-PNT--LTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~-~~~--~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
.+|+.||+.+...... +.. ....+.+++++++++.+|+. +..++. +..|||||||||+||++|+.+|++|+
T Consensus 345 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgGq~qrl~la~al~~~p~lll 419 (501)
T PRK11288 345 VHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQL-----IMNLSGGNQQKAILGRWLSEDMKVIL 419 (501)
T ss_pred CCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCc-----cccCCHHHHHHHHHHHHHccCCCEEE
Confidence 9999999987532110 001 12233345688999999994 555654 56999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 220 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 220 (583)
|||||+|||+.++.++++.|++++++|.|||++|||+. ++.++||++++|++|++++.|+++++
T Consensus 420 LDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~i~~l~~g~i~~~~~~~~~ 483 (501)
T PRK11288 420 LDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLP-EVLGVADRIVVMREGRIAGELAREQA 483 (501)
T ss_pred EcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHhhCCEEEEEECCEEEEEEccccC
Confidence 99999999999999999999999988999999999965 57889999999999999999987653
No 272
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=2.1e-38 Score=314.21 Aligned_cols=190 Identities=26% Similarity=0.422 Sum_probs=159.6
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEEC--Cc--cCCc-------cc-cccEEEEccC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN--DH--PYSK-------SL-KSKIGFVTQD 74 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~--g~--~~~~-------~~-~~~i~yv~Q~ 74 (583)
+.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++ |. ++.. .. ++.++|++|+
T Consensus 21 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~ 98 (224)
T TIGR02324 21 LPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYL--PDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQF 98 (224)
T ss_pred eEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEecc
Confidence 579999999999999999999999999999999999653 578999998 42 3321 11 3569999999
Q ss_pred CCCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCccCcccChHHHHHHHHHHHHHhCCCE
Q 007952 75 DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC-QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSL 153 (583)
Q Consensus 75 ~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~i 153 (583)
+.+++.+||+|++.+..... ....++..+++.++++.+|+.+. .+. .+.+||||||||++||++|+.+|++
T Consensus 99 ~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~LS~G~~qrl~laral~~~p~l 170 (224)
T TIGR02324 99 LRVIPRVSALEVVAEPLLER---GVPREAARARARELLARLNIPERLWHL-----PPATFSGGEQQRVNIARGFIADYPI 170 (224)
T ss_pred cccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhhC-----CcccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999998764322 12334455678899999999753 333 4679999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEc
Q 007952 154 LFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG 207 (583)
Q Consensus 154 llLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~ 207 (583)
++|||||+|||+.++..+.+.|++++++|+|||++||++ ..+.+.||+++.+.
T Consensus 171 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~-~~~~~~~d~i~~~~ 223 (224)
T TIGR02324 171 LLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDE-EVRELVADRVMDVT 223 (224)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcceeEecC
Confidence 999999999999999999999999987899999999995 34667899998763
No 273
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.1e-38 Score=340.07 Aligned_cols=207 Identities=28% Similarity=0.462 Sum_probs=183.0
Q ss_pred CccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-----cccccEEEEccCCCC
Q 007952 3 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-----SLKSKIGFVTQDDVL 77 (583)
Q Consensus 3 ~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-----~~~~~i~yv~Q~~~~ 77 (583)
+.+..++|+||||++++||++||+|.||||||||+|+|+|.. ++++|+|.+||++... .....|+.|.||..+
T Consensus 17 ~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~--~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L 94 (500)
T COG1129 17 SFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVY--PPDSGEILIDGKPVAFSSPRDALAAGIATVHQELSL 94 (500)
T ss_pred EcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcc--cCCCceEEECCEEccCCCHHHHHhCCcEEEeechhc
Confidence 456678999999999999999999999999999999999965 3789999999998741 235679999999999
Q ss_pred CCCCCHHHHHHHHHHcCCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEE
Q 007952 78 FPHLTVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFL 156 (583)
Q Consensus 78 ~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illL 156 (583)
.|+|||.||+.++...+.+ .-++++...+++.++|+.+|+....++. +.+||+||||.|.||+||..++++|+|
T Consensus 95 ~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~-----v~~LsiaqrQ~VeIArAl~~~arllIl 169 (500)
T COG1129 95 VPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTL-----VGDLSIAQRQMVEIARALSFDARVLIL 169 (500)
T ss_pred cCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhh-----hhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999999999876543321 2356788888999999999996445554 568999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcCh
Q 007952 157 DEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 217 (583)
Q Consensus 157 DEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 217 (583)
||||+.|+......+.+.+++|+++|.+||++||.. .|++++||+|.+|.||+.+..++.
T Consensus 170 DEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl-~Ei~~i~DritVlRDG~~v~~~~~ 229 (500)
T COG1129 170 DEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRL-DEVFEIADRITVLRDGRVVGTRPT 229 (500)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcH-HHHHHhcCEEEEEeCCEEeeeccc
Confidence 999999999999999999999999999999999995 579999999999999999988883
No 274
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=1.1e-38 Score=306.18 Aligned_cols=160 Identities=28% Similarity=0.541 Sum_probs=144.2
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-----cccccEEEEccCC---CCCCC
Q 007952 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-----SLKSKIGFVTQDD---VLFPH 80 (583)
Q Consensus 9 iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-----~~~~~i~yv~Q~~---~~~~~ 80 (583)
+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. ..++.++|++|+. .+++.
T Consensus 15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 92 (182)
T cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRP--PASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLD 92 (182)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCC
Confidence 8999999999999999999999999999999999653 678999999987643 2356799999984 57888
Q ss_pred CCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCC
Q 007952 81 LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPT 160 (583)
Q Consensus 81 lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPt 160 (583)
+|++||+.+... ||||||||++||++|+.+|++++|||||
T Consensus 93 ~t~~e~l~~~~~----------------------------------------LS~G~~qrl~la~al~~~p~llllDEP~ 132 (182)
T cd03215 93 LSVAENIALSSL----------------------------------------LSGGNQQKVVLARWLARDPRVLILDEPT 132 (182)
T ss_pred CcHHHHHHHHhh----------------------------------------cCHHHHHHHHHHHHHccCCCEEEECCCC
Confidence 999999976420 8999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeE
Q 007952 161 SGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 211 (583)
Q Consensus 161 sgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~i 211 (583)
+|||+.++..+.+.|++++++|+|+|+++|++. ++.+.||++++|++|++
T Consensus 133 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 133 RGVDVGAKAEIYRLIRELADAGKAVLLISSELD-ELLGLCDRILVMYEGRI 182 (182)
T ss_pred cCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEecCCcC
Confidence 999999999999999999877999999999964 57788999999999974
No 275
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=1.5e-38 Score=332.05 Aligned_cols=186 Identities=31% Similarity=0.524 Sum_probs=163.2
Q ss_pred EECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc--cccccEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCCHH
Q 007952 25 LMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQ 102 (583)
Q Consensus 25 i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~--~~~~~i~yv~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~ 102 (583)
|+||||||||||||+|+|... +++|+|.++|+++.. ..++.++|++|++.+++.+||+||+.|....+ ..+++
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~--p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~ 75 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQ--PDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMR---KVPRA 75 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCC--CCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhc---CCCHH
Confidence 689999999999999999653 679999999988743 23567999999999999999999999976432 23445
Q ss_pred HHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-
Q 007952 103 QKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA- 181 (583)
Q Consensus 103 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~- 181 (583)
+.+++++++++.+||.+..++ .+.+|||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|++++++
T Consensus 76 ~~~~~~~~~l~~~~l~~~~~~-----~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~ 150 (325)
T TIGR01187 76 EIKPRVLEALRLVQLEEFADR-----KPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQL 150 (325)
T ss_pred HHHHHHHHHHHHcCCcchhcC-----ChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhc
Confidence 556778999999999877665 46799999999999999999999999999999999999999999999999765
Q ss_pred CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 182 GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 182 g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|+|||++||++. ++.++||++++|++|+++..|+++++.
T Consensus 151 g~tiiivTHd~~-e~~~~~d~i~vl~~G~i~~~g~~~~~~ 189 (325)
T TIGR01187 151 GITFVFVTHDQE-EAMTMSDRIAIMRKGKIAQIGTPEEIY 189 (325)
T ss_pred CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 899999999975 578899999999999999999998874
No 276
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=4.6e-39 Score=358.99 Aligned_cols=204 Identities=33% Similarity=0.537 Sum_probs=168.9
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~l 81 (583)
++++|+|+|+++++||.++|+||||||||||+|+|+|... +.+|+|.+||.++.+ .+++.++||+|++.+|+.
T Consensus 330 ~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~--~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~- 406 (544)
T TIGR01842 330 KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWP--PTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPG- 406 (544)
T ss_pred CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEehhhCCHHHHhhheEEecCCcccccc-
Confidence 4679999999999999999999999999999999999653 678999999988753 457889999999999986
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHH-----HHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEE
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEK-----RAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFL 156 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illL 156 (583)
|++||+.+.. + ..+.++..+ ..++.++.+ .+-.|+.+|. ....||||||||++|||||+++|++|+|
T Consensus 407 ti~~Ni~~~~----~-~~~~~~~~~~~~~~~~~~~i~~l--~~gl~t~~~~-~g~~LSgGq~qrl~lARall~~~~ilil 478 (544)
T TIGR01842 407 TVAENIARFG----E-NADPEKIIEAAKLAGVHELILRL--PDGYDTVIGP-GGATLSGGQRQRIALARALYGDPKLVVL 478 (544)
T ss_pred cHHHHHhccC----C-CCCHHHHHHHHHHhChHHHHHhC--ccccccccCC-CcCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999997532 1 123333221 123444443 2233566653 4678999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 157 DEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 157 DEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
||||+|||+.++..+.+.|+++.++|+|+|+++|+++ ..+.||++++|++|++++.|+++++.+
T Consensus 479 DEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~--~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 479 DEPNSNLDEEGEQALANAIKALKARGITVVVITHRPS--LLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred eCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH--HHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 9999999999999999999998767899999999975 357899999999999999999988653
No 277
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.9e-39 Score=306.59 Aligned_cols=161 Identities=37% Similarity=0.645 Sum_probs=145.0
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc------cccccEEEEccCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK------SLKSKIGFVTQDDVLF 78 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~------~~~~~i~yv~Q~~~~~ 78 (583)
+++.+++|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++.+ ..++.++|++|++.++
T Consensus 11 ~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~--~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 88 (178)
T cd03229 11 GQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLE--EPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALF 88 (178)
T ss_pred CCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCceEEEECCEEccccchhHHHHhhcEEEEecCCccC
Confidence 3467999999999999999999999999999999999965 3578999999987642 2457899999999999
Q ss_pred CCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeC
Q 007952 79 PHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 158 (583)
Q Consensus 79 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDE 158 (583)
+.+|++||+.+. ||||||||++||++|+.+|++++|||
T Consensus 89 ~~~t~~~~l~~~------------------------------------------lS~G~~qr~~la~al~~~p~llilDE 126 (178)
T cd03229 89 PHLTVLENIALG------------------------------------------LSGGQQQRVALARALAMDPDVLLLDE 126 (178)
T ss_pred CCCCHHHheeec------------------------------------------CCHHHHHHHHHHHHHHCCCCEEEEeC
Confidence 899999987541 89999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCe
Q 007952 159 PTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGS 210 (583)
Q Consensus 159 PtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~ 210 (583)
||+|||+.++..+.+.|++++++ |+|+|+++|++. ++.+.||++++|++|+
T Consensus 127 P~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 127 PTSALDPITRREVRALLKSLQAQLGITVVLVTHDLD-EAARLADRVVVLRDGK 178 (178)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeCCC
Confidence 99999999999999999999887 899999999965 5667899999999885
No 278
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=2.9e-39 Score=371.26 Aligned_cols=201 Identities=26% Similarity=0.423 Sum_probs=170.0
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~l 81 (583)
++++|+|+|++|++||.+||+||||||||||+|+|+|... +.+|+|.+||.++.+ .+|+.+|||+|++.+|+.
T Consensus 486 ~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~--p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g- 562 (708)
T TIGR01193 486 GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQ--ARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSG- 562 (708)
T ss_pred CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC--CCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhH-
Confidence 4679999999999999999999999999999999999653 678999999998743 568899999999999986
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCccCcccChHHHHHHHHHHHHHhCCCEE
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL-------ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLL 154 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~il 154 (583)
|++||+.++.. + ..+.+ ++.+.++..++ .+-.||.+|. ...+||||||||++||||++++|++|
T Consensus 563 TI~eNi~l~~~---~-~~~~~----~i~~a~~~a~l~~~i~~lp~gldt~i~e-~G~~LSgGQrQRialARall~~p~il 633 (708)
T TIGR01193 563 SILENLLLGAK---E-NVSQD----EIWAACEIAEIKDDIENMPLGYQTELSE-EGSSISGGQKQRIALARALLTDSKVL 633 (708)
T ss_pred HHHHHHhccCC---C-CCCHH----HHHHHHHHhCCHHHHHhcccccCcEecC-CCCCCCHHHHHHHHHHHHHhhCCCEE
Confidence 99999987521 1 22332 34444554444 3345777764 45789999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 155 FLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
+||||||+||+.++..+++.|+++ +|+|+|+++|+++ ..+.||+|++|++|++++.|+++++.+
T Consensus 634 iLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~--~~~~~D~i~~l~~G~i~~~G~~~~L~~ 697 (708)
T TIGR01193 634 ILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLS--VAKQSDKIIVLDHGKIIEQGSHDELLD 697 (708)
T ss_pred EEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchH--HHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999985 4899999999975 357899999999999999999998864
No 279
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=2.4e-39 Score=321.33 Aligned_cols=191 Identities=33% Similarity=0.552 Sum_probs=157.2
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~lT 82 (583)
+.+|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++.. ..++.++|++|++.+++ .|
T Consensus 27 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~--~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~t 103 (226)
T cd03248 27 TLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFY--QPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFA-RS 103 (226)
T ss_pred CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc--CCCCcEEEECCCchHHcCHHHHHhhEEEEecccHHHh-hh
Confidence 46999999999999999999999999999999999965 3678999999987642 23567999999998886 59
Q ss_pred HHHHHHHHHHcCCCCCCCH---HHHHHHHHHHHHHc--CCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEe
Q 007952 83 VKETLTYAALLRLPNTLTK---QQKEKRAIDVINEL--GLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLD 157 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~---~~~~~~v~~~l~~l--gL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLD 157 (583)
|+||+.+.... ..... ......+++.++.+ |+++..+. .+++||||||||++||++|+.+|++++||
T Consensus 104 v~~nl~~~~~~---~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~-----~~~~LSgG~~qrv~laral~~~p~llllD 175 (226)
T cd03248 104 LQDNIAYGLQS---CSFECVKEAAQKAHAHSFISELASGYDTEVGE-----KGSQLSGGQKQRVAIARALIRNPQVLILD 175 (226)
T ss_pred HHHHhccccCC---CCHHHHHHHHHHcCcHHHHHhccccccchhhc-----CCCcCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 99999875321 11110 11112356778888 77655443 46799999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeE
Q 007952 158 EPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 211 (583)
Q Consensus 158 EPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~i 211 (583)
|||+|||+.++..+.+.|+++++ ++|||++||++.. + ..||++++|++|++
T Consensus 176 EPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~-~-~~~d~i~~l~~g~i 226 (226)
T cd03248 176 EATSALDAESEQQVQQALYDWPE-RRTVLVIAHRLST-V-ERADQILVLDGGRI 226 (226)
T ss_pred CCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECCHHH-H-HhCCEEEEecCCcC
Confidence 99999999999999999999875 6899999999764 5 45999999999974
No 280
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=1.2e-38 Score=352.80 Aligned_cols=205 Identities=22% Similarity=0.324 Sum_probs=171.0
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-----cccccEEEEccCC---CCCC
Q 007952 8 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-----SLKSKIGFVTQDD---VLFP 79 (583)
Q Consensus 8 ~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-----~~~~~i~yv~Q~~---~~~~ 79 (583)
.+|+|+|+++++||+++|+||||||||||+|+|+|.. ++.+|+|.++|+++.. ..++.++|++|+. .+++
T Consensus 277 ~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~--~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~ 354 (510)
T PRK15439 277 EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLR--PARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYL 354 (510)
T ss_pred CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCC--CCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccC
Confidence 3689999999999999999999999999999999965 3578999999987642 1245799999984 5888
Q ss_pred CCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeC
Q 007952 80 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 158 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDE 158 (583)
.+|+.||+......+.+........+++++++++.+||+ +..++ .+++|||||||||+||++|+.+|++|||||
T Consensus 355 ~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~LSgG~kqrl~la~al~~~p~lLlLDE 429 (510)
T PRK15439 355 DAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQ-----AARTLSGGNQQKVLIAKCLEASPQLLIVDE 429 (510)
T ss_pred CCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccC-----ccccCCcHHHHHHHHHHHHhhCCCEEEECC
Confidence 899999986421111111111223345688999999997 55565 357999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhH
Q 007952 159 PTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 220 (583)
Q Consensus 159 PtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 220 (583)
||+|||+.++..+.+.|++++++|.|||++|||+. ++.++||++++|++|+++..|+++++
T Consensus 430 Pt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~-~i~~~~d~i~~l~~G~i~~~~~~~~~ 490 (510)
T PRK15439 430 PTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLE-EIEQMADRVLVMHQGEISGALTGAAI 490 (510)
T ss_pred CCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEEccccC
Confidence 99999999999999999999888999999999975 57889999999999999999887653
No 281
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=8e-39 Score=360.34 Aligned_cols=201 Identities=28% Similarity=0.485 Sum_probs=169.1
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~l 81 (583)
++.+|+|+|+++++||.++|+|+||||||||+|+|+|... +.+|+|.+||.++.+ .+++.++||+|++.+|+.
T Consensus 347 ~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~--p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~- 423 (588)
T PRK13657 347 SRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFD--PQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNR- 423 (588)
T ss_pred CCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccc-
Confidence 3579999999999999999999999999999999999653 578999999998753 467889999999999975
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCccCcccChHHHHHHHHHHHHHhCCCEE
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-------RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLL 154 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~il 154 (583)
|++||+.++. | ..+.+ ++.+.++..++. +-.||.+|. ..+.||||||||++|||+|+++|+++
T Consensus 424 Ti~~Ni~~~~----~-~~~d~----~i~~al~~~~l~~~i~~lp~gldt~i~~-~g~~LSgGq~QRialARall~~~~il 493 (588)
T PRK13657 424 SIEDNIRVGR----P-DATDE----EMRAAAERAQAHDFIERKPDGYDTVVGE-RGRQLSGGERQRLAIARALLKDPPIL 493 (588)
T ss_pred cHHHHHhcCC----C-CCCHH----HHHHHHHHhCHHHHHHhCcccccchhcC-CCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999998752 2 12333 244445544443 345676664 35679999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 155 FLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
+||||||+||+.++..+.+.|+++. +++|+|++||+++ ..+.+|+|++|++|+++..|+.++..+
T Consensus 494 iLDEpts~LD~~t~~~i~~~l~~~~-~~~tvIiitHr~~--~~~~~D~ii~l~~G~i~~~g~~~~l~~ 558 (588)
T PRK13657 494 ILDEATSALDVETEAKVKAALDELM-KGRTTFIIAHRLS--TVRNADRILVFDNGRVVESGSFDELVA 558 (588)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHh-cCCEEEEEEecHH--HHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 9999999999999999999999875 4799999999974 467899999999999999999988753
No 282
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.1e-38 Score=308.94 Aligned_cols=183 Identities=27% Similarity=0.386 Sum_probs=156.6
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc---cccccEEEEccCCCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---SLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~---~~~~~i~yv~Q~~~~~~~l 81 (583)
+++++|+|+|+++++||+++|+||||||||||+++|+|... +++|+|+++|+++.+ ..++.++|++|+..+++.+
T Consensus 12 ~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~ 89 (200)
T PRK13540 12 HDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLN--PEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYL 89 (200)
T ss_pred CCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeeEEECCCccccCHHHHHhheEEeccccccCcCC
Confidence 35679999999999999999999999999999999999653 678999999987742 3467899999999988999
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 161 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPts 161 (583)
||+||+.+..... . .+.+++++++.+++.+..++ .+.+||||||||++||++++.+|++|+|||||+
T Consensus 90 tv~~~~~~~~~~~------~--~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~~rv~laral~~~p~~lilDEP~~ 156 (200)
T PRK13540 90 TLRENCLYDIHFS------P--GAVGITELCRLFSLEHLIDY-----PCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLV 156 (200)
T ss_pred CHHHHHHHHHhcC------c--chHHHHHHHHHcCCchhhhC-----ChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 9999998864211 1 12467889999999765554 356899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEE
Q 007952 162 GLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLI 204 (583)
Q Consensus 162 gLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~ 204 (583)
|||+.++..+.+.|++++++|.|||++||++.. .+.+|...
T Consensus 157 ~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~--~~~~d~~~ 197 (200)
T PRK13540 157 ALDELSLLTIITKIQEHRAKGGAVLLTSHQDLP--LNKADYEE 197 (200)
T ss_pred ccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchh--ccccchhh
Confidence 999999999999999998789999999999753 46677543
No 283
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=3e-38 Score=309.43 Aligned_cols=187 Identities=26% Similarity=0.429 Sum_probs=158.7
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-cccccEEEEccCCCCCCCCCH
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-SLKSKIGFVTQDDVLFPHLTV 83 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-~~~~~i~yv~Q~~~~~~~lTv 83 (583)
+++.+|+|+|++|++||+++|+||||||||||+++|+|... +.+|+|.++|.++.. ..++.++|++|++.+++.+||
T Consensus 13 ~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv 90 (207)
T PRK13539 13 GGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP--PAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTV 90 (207)
T ss_pred CCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEeCcchhhHhhcEEecCCCcCCCCCcH
Confidence 34679999999999999999999999999999999999653 578999999987532 246679999999988899999
Q ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCC
Q 007952 84 KETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGL 163 (583)
Q Consensus 84 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgL 163 (583)
+||+.+....+. . ..++++++++.+||.+..+. .++.||||||||++||++|+.+|++++|||||+||
T Consensus 91 ~~~l~~~~~~~~---~----~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~L 158 (207)
T PRK13539 91 AENLEFWAAFLG---G----EELDIAAALEAVGLAPLAHL-----PFGYLSAGQKRRVALARLLVSNRPIWILDEPTAAL 158 (207)
T ss_pred HHHHHHHHHhcC---C----cHHHHHHHHHHcCCHHHHcC-----ChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 999987653321 1 12347889999999865554 35789999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcC
Q 007952 164 DSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 208 (583)
Q Consensus 164 D~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~ 208 (583)
|+.++..+.+.|++++++|+|||++||++.. +.. |+++-+..
T Consensus 159 D~~~~~~l~~~l~~~~~~~~tiii~sH~~~~-~~~--~~~~~~~~ 200 (207)
T PRK13539 159 DAAAVALFAELIRAHLAQGGIVIAATHIPLG-LPG--ARELDLGP 200 (207)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEeCCchh-hcc--CcEEeecC
Confidence 9999999999999998889999999999753 543 88877743
No 284
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=8.4e-39 Score=359.17 Aligned_cols=201 Identities=29% Similarity=0.486 Sum_probs=171.0
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~l 81 (583)
++++|+|+|+++++||.++|+|+||||||||+|+|+|... +.+|+|.+||.++++ .++++++||+|++.+|+.
T Consensus 344 ~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~--~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~- 420 (571)
T TIGR02203 344 DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYE--PDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFND- 420 (571)
T ss_pred CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccC--CCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccc-
Confidence 4679999999999999999999999999999999999653 678999999988652 467889999999999976
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCccCcccChHHHHHHHHHHHHHhCCCEE
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-------RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLL 154 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~il 154 (583)
|++|||.++. ++..+. ++++++++..|+. +-.||.+|+. .+.||||||||++|||+++.+|+++
T Consensus 421 Ti~~Ni~~~~----~~~~~~----~~i~~~l~~~~l~~~i~~lp~gldt~i~~~-g~~LSgGqrQRiaLARall~~~~il 491 (571)
T TIGR02203 421 TIANNIAYGR----TEQADR----AEIERALAAAYAQDFVDKLPLGLDTPIGEN-GVLLSGGQRQRLAIARALLKDAPIL 491 (571)
T ss_pred cHHHHHhcCC----CCCCCH----HHHHHHHHHcChHHHHHhCcCcccceecCC-CCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999998752 112232 3455566666553 3356777643 5689999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 155 FLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
+||||||+||+.++..+++.|++++ +++|+|++||++. ..+.||+|++|++|+++..|+.++..
T Consensus 492 lLDEpts~LD~~~~~~i~~~L~~~~-~~~tiIiitH~~~--~~~~~D~ii~l~~g~i~~~g~~~~l~ 555 (571)
T TIGR02203 492 ILDEATSALDNESERLVQAALERLM-QGRTTLVIAHRLS--TIEKADRIVVMDDGRIVERGTHNELL 555 (571)
T ss_pred EEeCccccCCHHHHHHHHHHHHHHh-CCCEEEEEehhhH--HHHhCCEEEEEeCCEEEeeCCHHHHH
Confidence 9999999999999999999999985 4799999999974 46889999999999999999999875
No 285
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=1.1e-38 Score=351.58 Aligned_cols=198 Identities=22% Similarity=0.333 Sum_probs=168.9
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCC--C
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVL--F 78 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~--~ 78 (583)
+++.+|+|+|+++++||+++|+||||||||||+|+|+|... +++|+|.++|.++.. ..++.++|++|++.. +
T Consensus 14 ~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~--p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 91 (490)
T PRK10938 14 SDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELP--LLSGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDML 91 (490)
T ss_pred CCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC--CCCceEEECCcccccCCHHHHHHHhceeccCcchhhc
Confidence 45679999999999999999999999999999999999653 578999999976532 234569999998642 1
Q ss_pred -C-----CCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCC
Q 007952 79 -P-----HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPS 152 (583)
Q Consensus 79 -~-----~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ 152 (583)
+ .+||+|++.+. .+.+++++++++.+||++..+. .+.+|||||||||+||++|+.+|+
T Consensus 92 ~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~~l~~~~~~-----~~~~LSgG~~qrv~la~al~~~p~ 155 (490)
T PRK10938 92 SPGEDDTGRTTAEIIQDE-----------VKDPARCEQLAQQFGITALLDR-----RFKYLSTGETRKTLLCQALMSEPD 155 (490)
T ss_pred ccchhhccccHHHhcccc-----------hhHHHHHHHHHHHcCCHhhhhC-----CcccCCHHHHHHHHHHHHHHcCCC
Confidence 1 47888877431 1234568899999999876665 457999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 153 LLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 153 illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
+|+|||||+|||+.++..+.+.|++++++|+|||++||++. .+.+.||++++|++|+++..|++++..
T Consensus 156 lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~~ 223 (490)
T PRK10938 156 LLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFD-EIPDFVQFAGVLADCTLAETGEREEIL 223 (490)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHH-HHHhhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999888999999999975 577899999999999999999987753
No 286
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=6e-38 Score=337.74 Aligned_cols=198 Identities=26% Similarity=0.356 Sum_probs=169.3
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHHH
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKET 86 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~ 86 (583)
+.+|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|.+. ++.+...+.+.+|++||
T Consensus 37 ~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~--P~sGeI~I~G~~~---------~i~~~~~l~~~lTV~En 105 (549)
T PRK13545 37 HYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTM--PNKGTVDIKGSAA---------LIAISSGLNGQLTGIEN 105 (549)
T ss_pred ceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCceEEEECCEee---------eEEeccccCCCCcHHHH
Confidence 569999999999999999999999999999999999653 6789999999652 22234456777999999
Q ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHH
Q 007952 87 LTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDST 166 (583)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~ 166 (583)
+.+..... ..+.++..++++++++.++|.+..++. +++||||||||++||++|+.+|++|+|||||+|||+.
T Consensus 106 L~l~~~~~---~~~~~e~~e~i~elLe~lgL~~~ld~~-----~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~ 177 (549)
T PRK13545 106 IELKGLMM---GLTKEKIKEIIPEIIEFADIGKFIYQP-----VKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQT 177 (549)
T ss_pred HHhhhhhc---CCCHHHHHHHHHHHHHHcCChhHhhCC-----cccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHH
Confidence 98754322 233455556788899999998766653 5799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHHHH
Q 007952 167 TALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYF 224 (583)
Q Consensus 167 ~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f 224 (583)
++..+++.|++++++|+|||++||++. ++.+.||++++|++|++++.|+++++...|
T Consensus 178 sr~~LlelL~el~~~G~TIIIVSHdl~-~i~~l~DrIivL~~GkIv~~G~~~el~~~~ 234 (549)
T PRK13545 178 FTKKCLDKMNEFKEQGKTIFFISHSLS-QVKSFCTKALWLHYGQVKEYGDIKEVVDHY 234 (549)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEECCHHHHHhhH
Confidence 999999999999888999999999975 577889999999999999999998876544
No 287
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.4e-38 Score=299.12 Aligned_cols=218 Identities=29% Similarity=0.392 Sum_probs=190.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCC-----ccccccEEEEccCCCCCCCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-----KSLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~-----~~~~~~i~yv~Q~~~~~~~l 81 (583)
|.||++||++|++||+++||||||||||||.++|+|......++|+|.++|+++. ++.|..+...+|.|.-+|..
T Consensus 17 keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~GV 96 (251)
T COG0396 17 KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPGV 96 (251)
T ss_pred hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCccCCCe
Confidence 6999999999999999999999999999999999997554568999999999875 24577899999999999999
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCC
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPT 160 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPt 160 (583)
|+.+.|..+...+....-...+..+++++.++.+++.+ ..+..+ -.++|||||||..|+..++.+|++.+||||-
T Consensus 97 ~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~v----N~GFSGGEkKR~EilQ~~~lePkl~ILDE~D 172 (251)
T COG0396 97 TNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYV----NEGFSGGEKKRNEILQLLLLEPKLAILDEPD 172 (251)
T ss_pred eHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhccc----CCCcCcchHHHHHHHHHHhcCCCEEEecCCC
Confidence 99999998776533221113456778899999999986 444443 3589999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhc--CeEEEEcCCeEEEEcChhhHHHHHHhcCCCC
Q 007952 161 SGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKF--DKLILLGKGSLLYFGKASEAMAYFSSIGCSP 231 (583)
Q Consensus 161 sgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~--D~v~~L~~G~iv~~G~~~~~~~~f~~~g~~~ 231 (583)
||||..+-+.+-+.++++++.|.+++++||.. .+.++. |++.+|.+|+|+..|.+ ++..+++.-||.|
T Consensus 173 SGLDIdalk~V~~~i~~lr~~~~~~liITHy~--rll~~i~pD~vhvl~~GrIv~sG~~-el~~~le~~gy~~ 242 (251)
T COG0396 173 SGLDIDALKIVAEGINALREEGRGVLIITHYQ--RLLDYIKPDKVHVLYDGRIVKSGDP-ELAEELEEKGYDW 242 (251)
T ss_pred cCccHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHhhcCCCEEEEEECCEEEecCCH-HHHHHHHHhchHH
Confidence 99999999999999999999999999999984 577776 99999999999999999 8888999988864
No 288
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=1.6e-38 Score=302.58 Aligned_cols=155 Identities=35% Similarity=0.634 Sum_probs=140.9
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~lT 82 (583)
+.+++|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|.++.+ ..++.++|++|++.+++. |
T Consensus 15 ~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~-t 91 (173)
T cd03246 15 PPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLR--PTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSG-S 91 (173)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccC--CCCCeEEECCEEcccCCHHHHHhheEEECCCCccccC-c
Confidence 569999999999999999999999999999999999653 578999999987642 346779999999988874 9
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCC
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 162 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsg 162 (583)
|+||+ ||||||||++||++|+.+|++++|||||+|
T Consensus 92 v~~~l---------------------------------------------LS~G~~qrv~la~al~~~p~~lllDEPt~~ 126 (173)
T cd03246 92 IAENI---------------------------------------------LSGGQRQRLGLARALYGNPRILVLDEPNSH 126 (173)
T ss_pred HHHHC---------------------------------------------cCHHHHHHHHHHHHHhcCCCEEEEECCccc
Confidence 99886 899999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeE
Q 007952 163 LDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 211 (583)
Q Consensus 163 LD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~i 211 (583)
||+.++..+.+.|++++++|+|||++||++. .+ +.||++++|++|++
T Consensus 127 LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~-~~~d~v~~l~~G~i 173 (173)
T cd03246 127 LDVEGERALNQAIAALKAAGATRIVIAHRPE-TL-ASADRILVLEDGRV 173 (173)
T ss_pred cCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEEECCCC
Confidence 9999999999999999878999999999975 44 68999999999974
No 289
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=2.4e-38 Score=320.37 Aligned_cols=199 Identities=24% Similarity=0.403 Sum_probs=159.6
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~lT 82 (583)
+.+|+|+|+++++||+++|+|+||||||||+++|+|... +.+|+|.++|+++.+ ..++.++|++|++.+++ .|
T Consensus 34 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l~~-~t 110 (257)
T cd03288 34 KPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVD--IFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFS-GS 110 (257)
T ss_pred CcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccC--CCCCeEEECCEEhhhCCHHHHhhhEEEECCCCcccc-cH
Confidence 579999999999999999999999999999999999653 678999999987643 34677999999998887 49
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHH-----HHHHHHHHc--CCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEK-----RAIDVINEL--GLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~-----~v~~~l~~l--gL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
++||+.... ....+...+ .+++.++.+ |++...+ ...+.||||||||++||++|+.+|++|+
T Consensus 111 v~~nl~~~~------~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~-----~~~~~LS~G~~qrl~laral~~~p~lll 179 (257)
T cd03288 111 IRFNLDPEC------KCTDDRLWEALEIAQLKNMVKSLPGGLDAVVT-----EGGENFSVGQRQLFCLARAFVRKSSILI 179 (257)
T ss_pred HHHhcCcCC------CCCHHHHHHHHHHhCcHHHHhhcccccCcEec-----cCCCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999985321 111111111 122333333 3332222 2467899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
|||||+|||+.++..+.+.++++. +++|||++||++.. +. .||++++|++|+++..|++++..+
T Consensus 180 lDEPt~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~~-~~-~~dri~~l~~G~i~~~g~~~~~~~ 243 (257)
T cd03288 180 MDEATASIDMATENILQKVVMTAF-ADRTVVTIAHRVST-IL-DADLVLVLSRGILVECDTPENLLA 243 (257)
T ss_pred EeCCccCCCHHHHHHHHHHHHHhc-CCCEEEEEecChHH-HH-hCCEEEEEECCEEEEeCCHHHHHh
Confidence 999999999999999999999975 48999999999864 54 499999999999999999887643
No 290
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=1.9e-38 Score=303.46 Aligned_cols=161 Identities=34% Similarity=0.616 Sum_probs=143.8
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc---cccccEEEEccCCCCCCCCCH
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---SLKSKIGFVTQDDVLFPHLTV 83 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~---~~~~~i~yv~Q~~~~~~~lTv 83 (583)
+.+++|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++.. ..++.++|++|++.+++ .|+
T Consensus 15 ~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~--~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~-~tv 91 (178)
T cd03247 15 QQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDL--KPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFD-TTL 91 (178)
T ss_pred ccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccC--CCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeec-ccH
Confidence 36999999999999999999999999999999999965 3578999999987642 34677999999998876 699
Q ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCC
Q 007952 84 KETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGL 163 (583)
Q Consensus 84 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgL 163 (583)
+||+ +..||||||||++|||+++.+|++++|||||+||
T Consensus 92 ~~~i------------------------------------------~~~LS~G~~qrv~laral~~~p~~lllDEP~~~L 129 (178)
T cd03247 92 RNNL------------------------------------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGL 129 (178)
T ss_pred HHhh------------------------------------------cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccC
Confidence 8886 2479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEc
Q 007952 164 DSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 215 (583)
Q Consensus 164 D~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 215 (583)
|+.++..+++.|++++ ++.|||++||++.. + +.+|++++|++|++++.|
T Consensus 130 D~~~~~~l~~~l~~~~-~~~tii~~sh~~~~-~-~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 130 DPITERQLLSLIFEVL-KDKTLIWITHHLTG-I-EHMDKILFLENGKIIMQG 178 (178)
T ss_pred CHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HhCCEEEEEECCEEEecC
Confidence 9999999999999986 58999999999764 5 569999999999998764
No 291
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=6.7e-39 Score=290.75 Aligned_cols=194 Identities=28% Similarity=0.481 Sum_probs=170.0
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCC----ccccccEEEEccCCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSLKSKIGFVTQDDVLFPH 80 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~----~~~~~~i~yv~Q~~~~~~~ 80 (583)
++.+||+|+|+.+.+||..+|.||||||||||+|+++.+. ++++|++++.|++++ +.+|++|+||.|.+.+|+.
T Consensus 14 ~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Li--sp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~ 91 (223)
T COG4619 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLI--SPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGD 91 (223)
T ss_pred CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhcc--CCCCceEEEcCccccccChHHHHHHHHHHHcCcccccc
Confidence 4678999999999999999999999999999999999754 468999999999986 3578999999999999997
Q ss_pred CCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCC
Q 007952 81 LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPT 160 (583)
Q Consensus 81 lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPt 160 (583)
||++|+.|....|..+. ..++..+.++.+++.+..- +..+..||||||||++|+|.|..-|+||+|||||
T Consensus 92 -tVeDNlifP~~~r~rr~-----dr~aa~~llar~~l~~~~L----~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~T 161 (223)
T COG4619 92 -TVEDNLIFPWQIRNRRP-----DRAAALDLLARFALPDSIL----TKNITELSGGEKQRIALIRNLQFMPKILLLDEIT 161 (223)
T ss_pred -chhhccccchHHhccCC-----ChHHHHHHHHHcCCchhhh----cchhhhccchHHHHHHHHHHhhcCCceEEecCch
Confidence 99999999877664322 3456778899999976432 3357799999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHH-HCCcEEEEEecCCChHHHhhcCeEEEEcCCeE
Q 007952 161 SGLDSTTALRIVQMLQDIA-EAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 211 (583)
Q Consensus 161 sgLD~~~~~~i~~~l~~l~-~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~i 211 (583)
|+||+.+++.|-++|.++. ++...++.+||++.. ..+.+|+++-+..|++
T Consensus 162 sALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dq-a~rha~k~itl~~G~~ 212 (223)
T COG4619 162 SALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQ-AIRHADKVITLQPGHA 212 (223)
T ss_pred hhcChhhHHHHHHHHHHHhhhhceEEEEEecChHH-HhhhhheEEEeccCcc
Confidence 9999999999999999986 678999999999865 5688999999999876
No 292
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=3.8e-38 Score=308.64 Aligned_cols=183 Identities=23% Similarity=0.420 Sum_probs=153.1
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~lT 82 (583)
+.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|.++.. ..++.++|++|++.+++ .|
T Consensus 21 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~-~t 97 (207)
T cd03369 21 PPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLE--AEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFS-GT 97 (207)
T ss_pred cccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccC--CCCCeEEECCEEhHHCCHHHHHhhEEEEecCCcccC-cc
Confidence 479999999999999999999999999999999999653 578999999987632 24567999999998887 59
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCC
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 162 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsg 162 (583)
|+||+.+.. ..+. +.+.+.++ + + ..+..||||||||++|||+|+.+|++++|||||+|
T Consensus 98 v~~~l~~~~------~~~~----~~~~~~l~---~----~-----~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~ 155 (207)
T cd03369 98 IRSNLDPFD------EYSD----EEIYGALR---V----S-----EGGLNLSQGQRQLLCLARALLKRPRVLVLDEATAS 155 (207)
T ss_pred HHHHhcccC------CCCH----HHHHHHhh---c----c-----CCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccc
Confidence 999996521 1121 12333333 2 2 24679999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcCh
Q 007952 163 LDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 217 (583)
Q Consensus 163 LD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 217 (583)
||+.++..+.+.|++++ +|+|+|++||++.. +. .||++++|++|+++..|++
T Consensus 156 LD~~~~~~l~~~l~~~~-~~~tiii~th~~~~-~~-~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 156 IDYATDALIQKTIREEF-TNSTILTIAHRLRT-II-DYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred CCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHH-Hh-hCCEEEEEECCEEEecCCC
Confidence 99999999999999985 48999999999764 54 4999999999999988764
No 293
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1.7e-38 Score=363.95 Aligned_cols=201 Identities=29% Similarity=0.526 Sum_probs=169.0
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~l 81 (583)
++.+|+|+|+++++||.++|+|+||||||||+|+|+|... +.+|+|.+||.++.+ .+|+.++||+|++.+|+.
T Consensus 469 ~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~--p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~- 545 (694)
T TIGR01846 469 SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYT--PQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSR- 545 (694)
T ss_pred CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhh-
Confidence 4679999999999999999999999999999999999653 578999999998753 467889999999999975
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCccCcccChHHHHHHHHHHHHHhCCCEE
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL-------ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLL 154 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~il 154 (583)
|++||+.++. | ..+.+ ++.+.++..++ ++-.||.+|. ...+||||||||++|||||+++|++|
T Consensus 546 ti~eNi~~~~----~-~~~~~----~i~~a~~~~~l~~~i~~lp~gl~t~i~~-~g~~LSgGq~qri~lARall~~~~il 615 (694)
T TIGR01846 546 SIRDNIALCN----P-GAPFE----HVIHAAKLAGAHDFISELPQGYNTEVGE-KGANLSGGQRQRIAIARALVGNPRIL 615 (694)
T ss_pred hHHHHHhcCC----C-CCCHH----HHHHHHHHcChHHHHHhCcCccCcEecC-CCCCCCHHHHHHHHHHHHHHhCCCEE
Confidence 9999998742 2 22333 23344444443 3335677764 36789999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 155 FLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
+|||||++||+.++..+.+.|+++. +++|+|++||+++. .+.||++++|++|++++.|+++++.+
T Consensus 616 ilDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~--~~~~d~ii~l~~G~i~~~g~~~~l~~ 680 (694)
T TIGR01846 616 IFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHRLST--VRACDRIIVLEKGQIAESGRHEELLA 680 (694)
T ss_pred EEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCChHH--HHhCCEEEEEeCCEEEEeCCHHHHHH
Confidence 9999999999999999999999985 58999999999853 46799999999999999999998764
No 294
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=6.9e-38 Score=318.18 Aligned_cols=207 Identities=27% Similarity=0.504 Sum_probs=184.5
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-------cccccEEEEccCC--C
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-------SLKSKIGFVTQDD--V 76 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-------~~~~~i~yv~Q~~--~ 76 (583)
...+++++|+++++||.++|+|+||||||||-.+|.+++ +.+|+|.++|+++.. .+|+++-.|+||+ .
T Consensus 299 ~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~---~s~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygS 375 (534)
T COG4172 299 HLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLI---PSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGS 375 (534)
T ss_pred heEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhc---CcCceEEECCccccccChhhhhhhhhhceEEEeCCCCC
Confidence 356899999999999999999999999999999999865 245999999998852 3578899999997 5
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEE
Q 007952 77 LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFL 156 (583)
Q Consensus 77 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illL 156 (583)
+-|.+||.|-+.-+.....| ..+.+++.+++.+.|+++||+... -++++++.|||||||++||||++.+|++++|
T Consensus 376 LsPRmtV~qII~EGL~vh~~-~ls~~eR~~rv~~aL~EVGLDp~~----r~RYPhEFSGGQRQRIAIARAliLkP~~i~L 450 (534)
T COG4172 376 LSPRMTVGQIIEEGLRVHEP-KLSAAERDQRVIEALEEVGLDPAT----RNRYPHEFSGGQRQRIAIARALILKPELILL 450 (534)
T ss_pred CCcccCHHHHhhhhhhhcCC-CCCHHHHHHHHHHHHHHcCCChhH----hhcCCcccCcchhhHHHHHHHHhcCCcEEEe
Confidence 89999999999888765443 468899999999999999997532 2468999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 157 DEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 157 DEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|||||+||-.-+.+|+++|++|.+ .|.+-++++||.. .+..+||+|++|++|+||+.|+.+++.
T Consensus 451 DEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~-VvrAl~~~viVm~~GkiVE~G~~~~if 515 (534)
T COG4172 451 DEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLA-VVRALCHRVIVMRDGKIVEQGPTEAVF 515 (534)
T ss_pred cCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHHhhceEEEEeCCEEeeeCCHHHHh
Confidence 999999999999999999999975 4999999999964 578899999999999999999999875
No 295
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=2.6e-38 Score=354.58 Aligned_cols=201 Identities=27% Similarity=0.512 Sum_probs=168.8
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~l 81 (583)
++.+|+|+|+++++||.++|+||||||||||+++|+|.. ++.+|+|.+||+++.+ .+++.++||+|++.+|+.
T Consensus 327 ~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~--~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~- 403 (569)
T PRK10789 327 DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHF--DVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSD- 403 (569)
T ss_pred CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhccc--CCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccc-
Confidence 357999999999999999999999999999999999965 3679999999998743 457889999999999975
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCccCcccChHHHHHHHHHHHHHhCCCEE
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL-------ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLL 154 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~il 154 (583)
|++||+.++. + ..+.+ ++++.++..++ ++-.+|.+|. ....||||||||++|||+|+++|+++
T Consensus 404 ti~~Ni~~~~----~-~~~~~----~~~~~~~~~~l~~~i~~lp~gl~t~~~~-~g~~LSgGq~qRi~lARall~~~~il 473 (569)
T PRK10789 404 TVANNIALGR----P-DATQQ----EIEHVARLASVHDDILRLPQGYDTEVGE-RGVMLSGGQKQRISIARALLLNAEIL 473 (569)
T ss_pred cHHHHHhcCC----C-CCCHH----HHHHHHHHcCCHHHHHhCcCcccceecC-CCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999998742 1 12333 23344444443 3445677764 36789999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 155 FLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
+|||||++||+.++..+.+.|+++. +|+|+|+++|+++. .+.+|++++|++|+++..|+.+++.+
T Consensus 474 llDEpts~LD~~~~~~i~~~l~~~~-~~~tii~itH~~~~--~~~~d~i~~l~~G~i~~~g~~~~l~~ 538 (569)
T PRK10789 474 ILDDALSAVDGRTEHQILHNLRQWG-EGRTVIISAHRLSA--LTEASEILVMQHGHIAQRGNHDQLAQ 538 (569)
T ss_pred EEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchhH--HHcCCEEEEEeCCEEEEecCHHHHHH
Confidence 9999999999999999999999985 58999999999753 46799999999999999999988753
No 296
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=8.2e-38 Score=308.73 Aligned_cols=189 Identities=27% Similarity=0.460 Sum_probs=152.3
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc--------cccccEEEEccCCCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--------SLKSKIGFVTQDDVL 77 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~--------~~~~~i~yv~Q~~~~ 77 (583)
++.+++|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. ..++.++|++|++.+
T Consensus 13 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 90 (218)
T cd03290 13 GLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQ--TLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWL 90 (218)
T ss_pred CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC--CCCCeEEECCcccccccccccchhhcceEEEEcCCCcc
Confidence 4679999999999999999999999999999999999753 578999999987532 134679999999988
Q ss_pred CCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCcccc-------ccccCccCcccChHHHHHHHHHHHHHhC
Q 007952 78 FPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD-------TMIGGSFVRGVSGGERKRVCIGNEIIIN 150 (583)
Q Consensus 78 ~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~-------~~ig~~~~~~LSgGerqRv~ia~~L~~~ 150 (583)
+ ..|++||+.+... ... ++..++++.+++.+..+ +.. +..+..||||||||++||++|+.+
T Consensus 91 ~-~~t~~~nl~~~~~------~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~LS~G~~qrv~laral~~~ 158 (218)
T cd03290 91 L-NATVEENITFGSP------FNK----QRYKAVTDACSLQPDIDLLPFGDQTEI-GERGINLSGGQRQRICVARALYQN 158 (218)
T ss_pred c-cccHHHHHhhcCc------CCH----HHHHHHHHHhCcHHHHHhCcCccccCc-ccCCCcCCHHHHHHHHHHHHHhhC
Confidence 7 5799999977421 111 12344556666543221 111 234679999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHH--HHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCe
Q 007952 151 PSLLFLDEPTSGLDSTTALRIVQ--MLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 210 (583)
Q Consensus 151 p~illLDEPtsgLD~~~~~~i~~--~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~ 210 (583)
|++++|||||+|||+.++..+++ .++.++++|.|||++||++.. + ..||++++|++|+
T Consensus 159 p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~-~-~~~d~i~~l~~G~ 218 (218)
T cd03290 159 TNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQY-L-PHADWIIAMKDGS 218 (218)
T ss_pred CCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHH-H-hhCCEEEEecCCC
Confidence 99999999999999999999998 677776678999999999754 5 5699999999884
No 297
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=3e-38 Score=302.69 Aligned_cols=165 Identities=35% Similarity=0.616 Sum_probs=143.0
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~l 81 (583)
++.+|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++.. ..++.++|++|
T Consensus 11 ~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~--~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q-------- 80 (180)
T cd03214 11 GRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLL--KPSSGEILLDGKDLASLSPKELARKIAYVPQ-------- 80 (180)
T ss_pred CeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCcEEEECCEECCcCCHHHHHHHHhHHHH--------
Confidence 467999999999999999999999999999999999965 3679999999987642 23445777777
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 161 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPts 161 (583)
+++.+|+.+..++ .++.||||||||++|||+|+.+|++++|||||+
T Consensus 81 -----------------------------~l~~~gl~~~~~~-----~~~~LS~G~~qrl~laral~~~p~llllDEP~~ 126 (180)
T cd03214 81 -----------------------------ALELLGLAHLADR-----PFNELSGGERQRVLLARALAQEPPILLLDEPTS 126 (180)
T ss_pred -----------------------------HHHHcCCHhHhcC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 5566677654443 357899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEc
Q 007952 162 GLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 215 (583)
Q Consensus 162 gLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 215 (583)
|||+.++..+.+.|++++++ |+|+|+++|++. ++.+.||++++|++|++++.|
T Consensus 127 ~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 127 HLDIAHQIELLELLRRLARERGKTVVMVLHDLN-LAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999876 899999999975 467899999999999998654
No 298
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=3.3e-38 Score=354.69 Aligned_cols=199 Identities=30% Similarity=0.516 Sum_probs=168.1
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~lT 82 (583)
+.+|+|+|++++|||.++|+||||||||||+|+|+|... +.+|+|.+||.++++ .+++.++|+||++.+|+. |
T Consensus 353 ~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~--p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~-T 429 (576)
T TIGR02204 353 QPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYD--PQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAA-S 429 (576)
T ss_pred CccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccC--CCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccc-c
Confidence 679999999999999999999999999999999999653 578999999988753 457789999999999975 9
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-------CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
++||+.++. |. .+. +++++.++..|+.+ -.++.+|+ ....||||||||++|||+++++|++|+
T Consensus 430 i~~Ni~~~~----~~-~~~----~~~~~~l~~~~l~~~i~~l~~gl~t~i~~-~g~~LSgGq~Qrl~laRal~~~~~ili 499 (576)
T TIGR02204 430 VMENIRYGR----PD-ATD----EEVEAAARAAHAHEFISALPEGYDTYLGE-RGVTLSGGQRQRIAIARAILKDAPILL 499 (576)
T ss_pred HHHHHhcCC----CC-CCH----HHHHHHHHHcCcHHHHHhCCCCCCceeCC-CCCcCCHHHHHHHHHHHHHHhCCCeEE
Confidence 999998742 11 222 33555566655532 34566654 357899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
||||||+||+.++..+++.|+++. +++|+|++||++. ..+.+|+++.|++|+++..|++++..
T Consensus 500 lDEpts~lD~~~~~~i~~~l~~~~-~~~t~IiitH~~~--~~~~~d~vi~l~~g~~~~~g~~~~l~ 562 (576)
T TIGR02204 500 LDEATSALDAESEQLVQQALETLM-KGRTTLIIAHRLA--TVLKADRIVVMDQGRIVAQGTHAELI 562 (576)
T ss_pred EeCcccccCHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCCEEEEEECCEEEeeecHHHHH
Confidence 999999999999999999999985 4899999999974 45789999999999999999988764
No 299
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=1.6e-37 Score=305.58 Aligned_cols=195 Identities=21% Similarity=0.218 Sum_probs=159.9
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEE-ECCccCCccccccEEEEccCCCCCCCCCHHHH
Q 007952 8 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSIT-YNDHPYSKSLKSKIGFVTQDDVLFPHLTVKET 86 (583)
Q Consensus 8 ~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~-~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~ 86 (583)
.+|+|+|+++++||+++|+||||||||||+|+|+|... +.+|+|. ++|... .+.|+..+++.+|++||
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~--~~sG~i~~~~~~~~---------~~~~~~~l~~~ltv~en 69 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDA--PDEGDFIGLRGDAL---------PLGANSFILPGLTGEEN 69 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc--CCCCCEEEecCcee---------ccccccccCCcCcHHHH
Confidence 47999999999999999999999999999999999653 6789997 777532 13346678899999999
Q ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHH
Q 007952 87 LTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDST 166 (583)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~ 166 (583)
+.+....+. .+.++.. +.+.+.++|++..++. ++.||||||||++||++|+.+|++++|||||+++|+.
T Consensus 70 l~~~~~~~~---~~~~~~~---~~~~~~~~l~~~~~~~-----~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~ 138 (213)
T PRK15177 70 ARMMASLYG---LDGDEFS---HFCYQLTQLEQCYTDR-----VSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNA 138 (213)
T ss_pred HHHHHHHcC---CCHHHHH---HHHHHHhChhHHhhch-----HhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHH
Confidence 998765331 2222222 2344556777666654 5689999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHHHHHh
Q 007952 167 TALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSS 226 (583)
Q Consensus 167 ~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~ 226 (583)
++..+.+.+.+..+ ++|+|++||++. .+.+.||++++|++|++++.|+.+++.++++.
T Consensus 139 ~~~~~~~~l~~~~~-~~~ii~vsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~ 196 (213)
T PRK15177 139 TQLRMQAALACQLQ-QKGLIVLTHNPR-LIKEHCHAFGVLLHGKITMCEDLAQATALFEQ 196 (213)
T ss_pred HHHHHHHHHHHHhh-CCcEEEEECCHH-HHHHhcCeeEEEECCeEEEeCCHHHHHHHHHH
Confidence 99999998866443 468999999975 47778999999999999999999999887654
No 300
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=4.1e-38 Score=328.55 Aligned_cols=210 Identities=32% Similarity=0.527 Sum_probs=180.7
Q ss_pred CccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCC
Q 007952 3 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLF 78 (583)
Q Consensus 3 ~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~ 78 (583)
.+.++++|+|+||.+++||.++|+||||||||||.|+|.|.. ++.+|.|.+||.+++. .+-+.|||+|||-.+|
T Consensus 345 Pg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w--~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF 422 (580)
T COG4618 345 PGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIW--PPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELF 422 (580)
T ss_pred CCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHccc--ccCCCcEEecchhhhcCCHHHhccccCcCcccceec
Confidence 455689999999999999999999999999999999999954 4789999999998753 4568899999999999
Q ss_pred CCCCHHHHHHHHHHcCCCCCCCHHH-----HHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCE
Q 007952 79 PHLTVKETLTYAALLRLPNTLTKQQ-----KEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSL 153 (583)
Q Consensus 79 ~~lTv~e~l~~~~~~~~~~~~~~~~-----~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~i 153 (583)
+. ||.||+.= ..++.+.+. +.+.|+|++- .+.+-.||.+|+. ...||||||||+++||||-.+|.+
T Consensus 423 ~G-TIaeNIaR-----f~~~~d~~kIieAA~lAgvHelIl--~lP~GYdT~iG~~-G~~LSgGQRQRIaLARAlYG~P~l 493 (580)
T COG4618 423 DG-TIAENIAR-----FGEEADPEKVIEAARLAGVHELIL--RLPQGYDTRIGEG-GATLSGGQRQRIALARALYGDPFL 493 (580)
T ss_pred CC-cHHHHHHh-----ccccCCHHHHHHHHHHcChHHHHH--hCcCCccCccCCC-CCCCCchHHHHHHHHHHHcCCCcE
Confidence 97 99999952 222222222 2223555554 4677789999853 678999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHHHHH
Q 007952 154 LFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFS 225 (583)
Q Consensus 154 llLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~ 225 (583)
++||||-|+||......+.+.|.+++++|.|+|+++|.|+ +...+|+|++|++|++..+|+.+|++....
T Consensus 494 vVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs--~L~~~Dkilvl~~G~~~~FG~r~eVLa~~~ 563 (580)
T COG4618 494 VVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPS--ALASVDKILVLQDGRIAAFGPREEVLAKVL 563 (580)
T ss_pred EEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHH--HHhhcceeeeecCChHHhcCCHHHHHHHhc
Confidence 9999999999999999999999999999999999999986 578899999999999999999999998754
No 301
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=7.3e-38 Score=357.63 Aligned_cols=206 Identities=30% Similarity=0.524 Sum_probs=177.6
Q ss_pred CccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCC
Q 007952 3 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLF 78 (583)
Q Consensus 3 ~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~ 78 (583)
+..+.+||+|+|+++++||.+||+|||||||||.+.+|-. .++ |++|+|.+||+++++ .+|+++|.|.|+|.||
T Consensus 999 sRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeR-fYd-p~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF 1076 (1228)
T KOG0055|consen 999 TRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLER-FYD-PDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLF 1076 (1228)
T ss_pred CCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHH-hcC-CCCCeEEECCcccccCCHHHHHHhcceeccCchhh
Confidence 4567789999999999999999999999999999999996 433 578999999999864 5789999999999999
Q ss_pred CCCCHHHHHHHHHHcCCCCCCCHHHHHHHH-----HHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCE
Q 007952 79 PHLTVKETLTYAALLRLPNTLTKQQKEKRA-----IDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSL 153 (583)
Q Consensus 79 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v-----~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~i 153 (583)
.. |++||+.|+. .+ .+.++..+.+ .+.+ .+|.+-.||.+|. ...+||||||||++||||+++||+|
T Consensus 1077 ~~-TIrENI~YG~----~~-vs~~eIi~Aak~ANaH~FI--~sLP~GyDT~vGe-rG~QLSGGQKQRIAIARAilRnPkI 1147 (1228)
T KOG0055|consen 1077 NG-TIRENIAYGS----EE-VSEEEIIEAAKLANAHNFI--SSLPQGYDTRVGE-RGVQLSGGQKQRIAIARAILRNPKI 1147 (1228)
T ss_pred cc-cHHHHHhccC----CC-CCHHHHHHHHHHhhhHHHH--hcCcCcccCccCc-ccCcCCchHHHHHHHHHHHHcCCCe
Confidence 86 9999999981 11 4444443322 2222 2678888999985 4678999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 154 LFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 154 llLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
|+|||.||+||+++.+-+.+.|.+.. .|+|.|++.|+++. .+.||.|.++++|+|++.|+.+++++
T Consensus 1148 LLLDEATSALDseSErvVQeALd~a~-~gRT~IvIAHRLST--IqnaD~I~Vi~~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1148 LLLDEATSALDSESERVVQEALDRAM-EGRTTIVIAHRLST--IQNADVIAVLKNGKVVEQGTHDELLA 1213 (1228)
T ss_pred eeeeccchhhhhhhHHHHHHHHHHhh-cCCcEEEEecchhh--hhcCCEEEEEECCEEEecccHHHHHh
Confidence 99999999999999999999999965 59999999999864 57899999999999999999999876
No 302
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=9.6e-38 Score=350.75 Aligned_cols=200 Identities=28% Similarity=0.426 Sum_probs=165.8
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~lT 82 (583)
+++|+|+|+++++||.++|+||||||||||+++|+|.. ++.+|+|.+||.++.+ .+++.++||+|++.+++ .|
T Consensus 348 ~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~--~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~-~t 424 (585)
T TIGR01192 348 SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVY--DPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFN-RS 424 (585)
T ss_pred CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCC--CCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCc-cc
Confidence 56899999999999999999999999999999999965 3679999999988743 46788999999999887 59
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELG-------LERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
++||+.++. + ..+.++.. +.++..+ +.+..++.+|. ...+||||||||++|||+|+.+|++|+
T Consensus 425 i~~Ni~~~~----~-~~~~~~~~----~a~~~~~~~~~i~~l~~g~~t~~~~-~~~~LSgGq~qrl~lARall~~p~ili 494 (585)
T TIGR01192 425 IRENIRLGR----E-GATDEEVY----EAAKAAAAHDFILKRSNGYDTLVGE-RGNRLSGGERQRLAIARAILKNAPILV 494 (585)
T ss_pred HHHHHhcCC----C-CCCHHHHH----HHHHHhCcHHHHHhccccccchhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999998752 1 12333332 2233322 22334555653 467899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
|||||+|||+.++..+.+.|+++. +++|+|+++|+++. + +.||++++|++|++++.|+.++..+
T Consensus 495 lDEpts~LD~~~~~~i~~~l~~~~-~~~tvI~isH~~~~-~-~~~d~i~~l~~G~i~~~g~~~~l~~ 558 (585)
T TIGR01192 495 LDEATSALDVETEARVKNAIDALR-KNRTTFIIAHRLST-V-RNADLVLFLDQGRLIEKGSFQELIQ 558 (585)
T ss_pred EECCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcChHH-H-HcCCEEEEEECCEEEEECCHHHHHH
Confidence 999999999999999999999885 48999999999753 4 6799999999999999999988754
No 303
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=1.8e-37 Score=324.36 Aligned_cols=204 Identities=27% Similarity=0.392 Sum_probs=181.3
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCC-----ccccccEEEEccCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-----KSLKSKIGFVTQDDVLFP 79 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~-----~~~~~~i~yv~Q~~~~~~ 79 (583)
+...+++|||+++++||++||+|+||||||||+++|.|... |++|+|.++|++.. +..+..||+|.|+..++|
T Consensus 15 ~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~--P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~ 92 (501)
T COG3845 15 PGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQ--PDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVP 92 (501)
T ss_pred CCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCccc--CCcceEEECCEEeccCCHHHHHHcCCcEEeecccccc
Confidence 45678999999999999999999999999999999999653 68999999999864 235678999999999999
Q ss_pred CCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCC
Q 007952 80 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEP 159 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEP 159 (583)
++||.||+..+..-......+.++..++++++.++.||+-..|.+ +..||-||||||.|-++|..+|++|+||||
T Consensus 93 ~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~-----V~dLsVG~qQRVEIlKaLyr~a~iLILDEP 167 (501)
T COG3845 93 TLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAK-----VADLSVGEQQRVEILKALYRGARLLILDEP 167 (501)
T ss_pred ccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccce-----eecCCcchhHHHHHHHHHhcCCCEEEEcCC
Confidence 999999999876432222356778888999999999998666654 568999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcC
Q 007952 160 TSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 216 (583)
Q Consensus 160 tsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 216 (583)
|+-|-|....++++.|++++++|+|||++||... |+.+.||++.+|.+||++..-+
T Consensus 168 TaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~-Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 168 TAVLTPQEADELFEILRRLAAEGKTIIFITHKLK-EVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred cccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhhCeeEEEeCCeEEeeec
Confidence 9999999999999999999999999999999965 6899999999999999876655
No 304
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=2e-37 Score=302.92 Aligned_cols=179 Identities=28% Similarity=0.459 Sum_probs=144.3
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHHH
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKET 86 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~ 86 (583)
+.+|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++| .++|++|++.+++ .|++||
T Consensus 18 ~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~--~~~~G~i~~~g---------~i~~~~q~~~l~~-~t~~en 85 (204)
T cd03250 18 SFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGEL--EKLSGSVSVPG---------SIAYVSQEPWIQN-GTIREN 85 (204)
T ss_pred cceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcC--CCCCCeEEEcC---------EEEEEecCchhcc-CcHHHH
Confidence 36999999999999999999999999999999999965 36789999998 5999999998885 699999
Q ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccc-------cccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCC
Q 007952 87 LTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ-------DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEP 159 (583)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEP 159 (583)
+.+... ...+ +..+.++.+++.+.. ++.. +..+.+||||||||++||++|+.+|++++||||
T Consensus 86 l~~~~~------~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~lS~G~~qrv~laral~~~p~llllDEP 154 (204)
T cd03250 86 ILFGKP------FDEE----RYEKVIKACALEPDLEILPDGDLTEI-GEKGINLSGGQKQRISLARAVYSDADIYLLDDP 154 (204)
T ss_pred hccCCC------cCHH----HHHHHHHHcCcHHHHHhccCccccee-cCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 987421 1111 122333333332211 1222 234678999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHH-HHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCe
Q 007952 160 TSGLDSTTALRIVQ-MLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 210 (583)
Q Consensus 160 tsgLD~~~~~~i~~-~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~ 210 (583)
|+|||+.++..+.+ ++++++++|+|||++||++. .+.. +|++++|++|+
T Consensus 155 ~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~-~~~~-~d~i~~l~~G~ 204 (204)
T cd03250 155 LSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQ-LLPH-ADQIVVLDNGR 204 (204)
T ss_pred cccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHH-HHhh-CCEEEEEeCCC
Confidence 99999999999998 56777666899999999975 3555 99999999985
No 305
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=1.1e-36 Score=305.71 Aligned_cols=192 Identities=26% Similarity=0.302 Sum_probs=157.6
Q ss_pred cccceeeceEEEEe-----CCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCC
Q 007952 5 EEKDILNGITGSVN-----PGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFP 79 (583)
Q Consensus 5 ~~~~iL~~vs~~i~-----~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~ 79 (583)
+..+.++|++++++ +||+++|+||||||||||+++|+|... +.+|+|.++|. .++|++|+....+
T Consensus 5 ~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~--p~~G~i~~~g~--------~i~~~~q~~~~~~ 74 (246)
T cd03237 5 TMKKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLK--PDEGDIEIELD--------TVSYKPQYIKADY 74 (246)
T ss_pred ccccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCc--CCCCeEEECCc--------eEEEecccccCCC
Confidence 34457888888887 689999999999999999999999653 67899999984 5999999988777
Q ss_pred CCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCC
Q 007952 80 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEP 159 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEP 159 (583)
.+||+|++.+...... . ....++++++.+||.+..++ .+..||||||||++||++|+.+|++++||||
T Consensus 75 ~~tv~e~l~~~~~~~~----~---~~~~~~~~l~~l~l~~~~~~-----~~~~LSgGe~qrv~iaraL~~~p~llllDEP 142 (246)
T cd03237 75 EGTVRDLLSSITKDFY----T---HPYFKTEIAKPLQIEQILDR-----EVPELSGGELQRVAIAACLSKDADIYLLDEP 142 (246)
T ss_pred CCCHHHHHHHHhhhcc----c---cHHHHHHHHHHcCCHHHhhC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 8999999976432110 1 12346788999999876665 3568999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEE--EEcChhh
Q 007952 160 TSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLL--YFGKASE 219 (583)
Q Consensus 160 tsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv--~~G~~~~ 219 (583)
|++||+.++..+.+.|++++++ |+|||++||++. .+..+||++++|+++..+ ..+++.+
T Consensus 143 t~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~-~~~~~~d~i~~l~~~~~~~~~~~~~~~ 204 (246)
T cd03237 143 SAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDII-MIDYLADRLIVFEGEPSVNGVANPPQS 204 (246)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEcCCCeeEEEeCCchH
Confidence 9999999999999999999764 899999999965 577789999999764333 3444444
No 306
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=7.1e-38 Score=379.12 Aligned_cols=203 Identities=27% Similarity=0.462 Sum_probs=171.4
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCC--------------------------------------
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-------------------------------------- 47 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~-------------------------------------- 47 (583)
++++|+|+|++|++|+.+||+||||||||||+++|.|... |
T Consensus 1180 ~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~yd-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1258 (1466)
T PTZ00265 1180 NVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYD-LKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEF 1258 (1466)
T ss_pred CCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCC-Ccccccccccccccccccccccccccccccccccccccc
Confidence 4579999999999999999999999999999999999654 3
Q ss_pred ---------------CcccEEEECCccCCc----cccccEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHH
Q 007952 48 ---------------TVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRA 108 (583)
Q Consensus 48 ---------------~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v 108 (583)
+.+|+|.+||.++.+ .+|+.||||+|++.+|+ .|++|||.|+. + ..+.++ +
T Consensus 1259 ~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~-gTIreNI~~g~----~-~at~ee----I 1328 (1466)
T PTZ00265 1259 SLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFN-MSIYENIKFGK----E-DATRED----V 1328 (1466)
T ss_pred ccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcccc-ccHHHHHhcCC----C-CCCHHH----H
Confidence 258999999998753 57889999999999997 59999999862 2 233333 3
Q ss_pred HHHHHHcC-------CCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-H
Q 007952 109 IDVINELG-------LERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA-E 180 (583)
Q Consensus 109 ~~~l~~lg-------L~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~-~ 180 (583)
+++++..+ |++-.||.+|. ....||||||||++|||||+++|+||+||||||+||+.+.+.|.+.|++++ .
T Consensus 1329 ~~A~k~A~l~~fI~~LP~GydT~VGe-~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~ 1407 (1466)
T PTZ00265 1329 KRACKFAAIDEFIESLPNKYDTNVGP-YGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDK 1407 (1466)
T ss_pred HHHHHHcCCHHHHHhCccccCCccCC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhcc
Confidence 34444433 45566888884 467899999999999999999999999999999999999999999999986 3
Q ss_pred CCcEEEEEecCCChHHHhhcCeEEEEcC----CeEE-EEcChhhHHH
Q 007952 181 AGKTVVTTIHQPSSRLFHKFDKLILLGK----GSLL-YFGKASEAMA 222 (583)
Q Consensus 181 ~g~tii~~~H~~~~~i~~~~D~v~~L~~----G~iv-~~G~~~~~~~ 222 (583)
+++|+|+++|+++. .+.||+|++|++ |+++ +.|+++++++
T Consensus 1408 ~~~TvIiIaHRlst--i~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~ 1452 (1466)
T PTZ00265 1408 ADKTIITIAHRIAS--IKRSDKIVVFNNPDRTGSFVQAHGTHEELLS 1452 (1466)
T ss_pred CCCEEEEEechHHH--HHhCCEEEEEeCCCCCCCEEEEecCHHHHHh
Confidence 68999999999753 577999999999 9955 8999999863
No 307
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.8e-37 Score=293.55 Aligned_cols=152 Identities=38% Similarity=0.656 Sum_probs=137.1
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCCCH
Q 007952 8 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLTV 83 (583)
Q Consensus 8 ~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~lTv 83 (583)
.+++|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|+++.+ ..++.++|++|++.+++ .|+
T Consensus 16 ~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~-~t~ 92 (171)
T cd03228 16 PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYD--PTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFS-GTI 92 (171)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhcc-chH
Confidence 79999999999999999999999999999999999653 578999999987642 24567999999998776 588
Q ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCC
Q 007952 84 KETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGL 163 (583)
Q Consensus 84 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgL 163 (583)
.||+ ||||||||++||++|+.+|++++|||||+||
T Consensus 93 ~e~l---------------------------------------------LS~G~~~rl~la~al~~~p~llllDEP~~gL 127 (171)
T cd03228 93 RENI---------------------------------------------LSGGQRQRIAIARALLRDPPILILDEATSAL 127 (171)
T ss_pred HHHh---------------------------------------------hCHHHHHHHHHHHHHhcCCCEEEEECCCcCC
Confidence 8876 8999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCe
Q 007952 164 DSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 210 (583)
Q Consensus 164 D~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~ 210 (583)
|+.++..+.+.|+++++ ++|||++||++. ++.. ||++++|++|+
T Consensus 128 D~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~-~d~~~~l~~g~ 171 (171)
T cd03228 128 DPETEALILEALRALAK-GKTVIVIAHRLS-TIRD-ADRIIVLDDGR 171 (171)
T ss_pred CHHHHHHHHHHHHHhcC-CCEEEEEecCHH-HHHh-CCEEEEEcCCC
Confidence 99999999999999964 799999999975 4555 99999999885
No 308
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=9.6e-37 Score=311.70 Aligned_cols=190 Identities=31% Similarity=0.460 Sum_probs=153.5
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHH
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 85 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e 85 (583)
.+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++| .++|++|++.+++. ||+|
T Consensus 49 ~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~--p~~G~I~i~g---------~i~yv~q~~~l~~~-tv~e 116 (282)
T cd03291 49 GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELE--PSEGKIKHSG---------RISFSSQFSWIMPG-TIKE 116 (282)
T ss_pred cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECC---------EEEEEeCccccccc-CHHH
Confidence 3579999999999999999999999999999999999753 6789999987 39999999988875 9999
Q ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccc-------cccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeC
Q 007952 86 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ-------DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 158 (583)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDE 158 (583)
|+.+.... .. .++.+.++.+++.+.. ++.++ ..+..||||||||++||++|+.+|++|+|||
T Consensus 117 nl~~~~~~------~~----~~~~~~l~~~~l~~~l~~~~~~~~~~~~-~~~~~LSgGq~qrv~lAraL~~~p~iLiLDE 185 (282)
T cd03291 117 NIIFGVSY------DE----YRYKSVVKACQLEEDITKFPEKDNTVLG-EGGITLSGGQRARISLARAVYKDADLYLLDS 185 (282)
T ss_pred Hhhccccc------CH----HHHHHHHHHhCCHHHHHhccccccceec-CCCCcCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 99864211 11 1122334444443221 22221 2357899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHH-HHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 159 PTSGLDSTTALRIVQML-QDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 159 PtsgLD~~~~~~i~~~l-~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
||+|||+.++..+.+.+ ++++ ++.|||++||++.. + ..||++++|++|++++.|+++++.
T Consensus 186 Pt~gLD~~~~~~l~~~ll~~~~-~~~tIiiisH~~~~-~-~~~d~i~~l~~G~i~~~g~~~~~~ 246 (282)
T cd03291 186 PFGYLDVFTEKEIFESCVCKLM-ANKTRILVTSKMEH-L-KKADKILILHEGSSYFYGTFSELQ 246 (282)
T ss_pred CCccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCChHH-H-HhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999865 5554 57999999999764 4 579999999999999999988764
No 309
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=6.7e-37 Score=297.09 Aligned_cols=180 Identities=22% Similarity=0.311 Sum_probs=151.2
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHH
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 85 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e 85 (583)
++.+++ +|+++++||+++|+||||||||||+++|+|... +.+|+|.++|.++.+..++.++|++|++.+++.+||+|
T Consensus 13 ~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~tv~~ 89 (195)
T PRK13541 13 QKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQ--PSSGNIYYKNCNINNIAKPYCTYIGHNLGLKLEMTVFE 89 (195)
T ss_pred CcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCcccChhhhhhEEeccCCcCCCccCCHHH
Confidence 344555 999999999999999999999999999999653 67899999998875433456999999988888899999
Q ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCH
Q 007952 86 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS 165 (583)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~ 165 (583)
|+.+..... . ..++++++++.+++.+..++ .++.||||||||++||++++.+|++++|||||+|||+
T Consensus 90 ~l~~~~~~~-----~---~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~ 156 (195)
T PRK13541 90 NLKFWSEIY-----N---SAETLYAAIHYFKLHDLLDE-----KCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSK 156 (195)
T ss_pred HHHHHHHhc-----c---cHHHHHHHHHHcCCHhhhcc-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 998864321 0 13457788899999876654 3578999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeE
Q 007952 166 TTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKL 203 (583)
Q Consensus 166 ~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v 203 (583)
.++..+.+.|++.+++|+|+|+++|++.. + +.+|-+
T Consensus 157 ~~~~~l~~~l~~~~~~~~tiii~sh~~~~-i-~~~~~~ 192 (195)
T PRK13541 157 ENRDLLNNLIVMKANSGGIVLLSSHLESS-I-KSAQIL 192 (195)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCCccc-c-chhhee
Confidence 99999999998877779999999999753 3 446654
No 310
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=1.9e-36 Score=343.21 Aligned_cols=203 Identities=28% Similarity=0.490 Sum_probs=178.4
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----c----ccccEEEEccCCCCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----S----LKSKIGFVTQDDVLF 78 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~----~~~~i~yv~Q~~~~~ 78 (583)
+.+|+|+|+++++||+++|+||||||||||+|+|+|..+ +++|+|.+||+++.. + .++.++|++|+..++
T Consensus 21 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~ 98 (648)
T PRK10535 21 VEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDK--PTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLL 98 (648)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcccC
Confidence 579999999999999999999999999999999999753 678999999988653 1 146799999999999
Q ss_pred CCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeC
Q 007952 79 PHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 158 (583)
Q Consensus 79 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDE 158 (583)
+.+|+.||+.+..... ..+.++.++++.++++.+||.+..++. +..||||||||++|||+|+.+|++|+|||
T Consensus 99 ~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~lgl~~~~~~~-----~~~LS~Gq~qrv~LAraL~~~P~lLllDE 170 (648)
T PRK10535 99 SHLTAAQNVEVPAVYA---GLERKQRLLRAQELLQRLGLEDRVEYQ-----PSQLSGGQQQRVSIARALMNGGQVILADE 170 (648)
T ss_pred CCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhcCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 9999999998865322 234456667889999999998776654 56899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 159 PTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 159 PtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
||+|||+.++..+.+.|++++++|+|+|++||++. ..+.||++++|++|++++.|++++..
T Consensus 171 P~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~--~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 171 PTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQ--VAAQAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHH--HHHhCCEEEEEECCEEEeecCccccc
Confidence 99999999999999999999878999999999975 34679999999999999999998764
No 311
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.9e-37 Score=336.17 Aligned_cols=204 Identities=20% Similarity=0.375 Sum_probs=167.4
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-----cccccEEEEccCC---CCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-----SLKSKIGFVTQDD---VLF 78 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-----~~~~~i~yv~Q~~---~~~ 78 (583)
+.+|+|+|+++++||+++|+||||||||||+|+|+|... +.+|+|.++|+++.. ..++.++|++|+. .++
T Consensus 261 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~ 338 (491)
T PRK10982 261 QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIRE--KSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIY 338 (491)
T ss_pred CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCc--CCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcc
Confidence 468999999999999999999999999999999999653 578999999987642 1245699999985 478
Q ss_pred CCCCHHHHHHHHHH--c-CCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccChHHHHHHHHHHHHHhCCCEE
Q 007952 79 PHLTVKETLTYAAL--L-RLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLL 154 (583)
Q Consensus 79 ~~lTv~e~l~~~~~--~-~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~il 154 (583)
+.+|+.+|..+... . ......+....+++++++++.+++. +..++ .+.+|||||||||+||++++.+|++|
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~LSgGq~qrv~la~al~~~p~il 413 (491)
T PRK10982 339 AYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRT-----QIGSLSGGNQQKVIIGRWLLTQPEIL 413 (491)
T ss_pred cCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCccc-----ccccCCcHHHHHHHHHHHHhcCCCEE
Confidence 88998877432210 0 1000012334456788899999995 34444 46799999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChh
Q 007952 155 FLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 218 (583)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 218 (583)
+|||||+|||+.++..+++.|++++++|+|||++|||+. ++.++||++++|++|+++..++.+
T Consensus 414 lLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~-~~~~~~d~v~~l~~g~i~~~~~~~ 476 (491)
T PRK10982 414 MLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMP-ELLGITDRILVMSNGLVAGIVDTK 476 (491)
T ss_pred EEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChH-HHHhhCCEEEEEECCEEEEEEccc
Confidence 999999999999999999999999888999999999965 578899999999999999877653
No 312
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=1.1e-36 Score=287.13 Aligned_cols=147 Identities=32% Similarity=0.490 Sum_probs=133.0
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-----cccccEEEEccCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-----SLKSKIGFVTQDDVLFP 79 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-----~~~~~i~yv~Q~~~~~~ 79 (583)
+++++++|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. ..++.++|++|
T Consensus 11 ~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q------ 82 (163)
T cd03216 11 GGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYK--PDSGEILVDGKEVSFASPRDARRAGIAMVYQ------ 82 (163)
T ss_pred CCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEECCcCCHHHHHhcCeEEEEe------
Confidence 34679999999999999999999999999999999999653 678999999987642 13456888888
Q ss_pred CCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCC
Q 007952 80 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEP 159 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEP 159 (583)
||||||||++||++|+.+|++++||||
T Consensus 83 -----------------------------------------------------LS~G~~qrl~laral~~~p~illlDEP 109 (163)
T cd03216 83 -----------------------------------------------------LSVGERQMVEIARALARNARLLILDEP 109 (163)
T ss_pred -----------------------------------------------------cCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEE
Q 007952 160 TSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 213 (583)
Q Consensus 160 tsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~ 213 (583)
|+|||+.++..+.+.|++++++|.|||+++|++. ++.+.||++++|++|++++
T Consensus 110 ~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 110 TAALTPAEVERLFKVIRRLRAQGVAVIFISHRLD-EVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred CcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEe
Confidence 9999999999999999999877999999999964 4678899999999999875
No 313
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=2e-36 Score=286.23 Aligned_cols=152 Identities=32% Similarity=0.540 Sum_probs=135.0
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHH
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 85 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e 85 (583)
++.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|. +.++|++|++.++ ..|++|
T Consensus 13 ~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~~~-------~~i~~~~q~~~~~-~~tv~~ 82 (166)
T cd03223 13 GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWP--WGSGRIGMPEG-------EDLLFLPQRPYLP-LGTLRE 82 (166)
T ss_pred CCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCC-------ceEEEECCCCccc-cccHHH
Confidence 3679999999999999999999999999999999999653 57899999874 5799999998765 579999
Q ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCH
Q 007952 86 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS 165 (583)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~ 165 (583)
|+.+. .+++||||||||++|||+|+.+|++++|||||+|||+
T Consensus 83 nl~~~--------------------------------------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~ 124 (166)
T cd03223 83 QLIYP--------------------------------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDE 124 (166)
T ss_pred Hhhcc--------------------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCH
Confidence 98642 1358999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCe
Q 007952 166 TTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 210 (583)
Q Consensus 166 ~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~ 210 (583)
.++..+.+.|+++ ++|+|++||++. ..+.||++++|++|-
T Consensus 125 ~~~~~l~~~l~~~---~~tiiivsh~~~--~~~~~d~i~~l~~~~ 164 (166)
T cd03223 125 ESEDRLYQLLKEL---GITVISVGHRPS--LWKFHDRVLDLDGEG 164 (166)
T ss_pred HHHHHHHHHHHHh---CCEEEEEeCChh--HHhhCCEEEEEcCCC
Confidence 9999999999886 689999999974 347899999998753
No 314
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=4.4e-37 Score=299.06 Aligned_cols=207 Identities=27% Similarity=0.419 Sum_probs=179.0
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc---cccccEEEEccC-CCCCCCCCH
Q 007952 8 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---SLKSKIGFVTQD-DVLFPHLTV 83 (583)
Q Consensus 8 ~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~---~~~~~i~yv~Q~-~~~~~~lTv 83 (583)
.+.+|+||+|++|++++++|||||||||+||+|+|.+. |++|.|.+||+..-+ ++-+.+++|+-+ -.+...+.+
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~--p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~ 115 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLL--PTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPA 115 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccc--cCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechh
Confidence 47899999999999999999999999999999999764 679999999986532 234567776644 456666778
Q ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCC
Q 007952 84 KETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGL 163 (583)
Q Consensus 84 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgL 163 (583)
.|.+......+ .++.++..++.+++.+.++|+...+. +++.||-|||.|+.||.+|+++|+||||||||-||
T Consensus 116 ~ds~~v~~~Iy---~Ipd~~F~~r~~~l~eiLdl~~~lk~-----~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgL 187 (325)
T COG4586 116 LDSLEVLKLIY---EIPDDEFAERLDFLTEILDLEGFLKW-----PVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGL 187 (325)
T ss_pred hhhHHHHHHHH---hCCHHHHHHHHHHHHHHhcchhhhhh-----hhhhccchHHHHHHHHHHhcCCCcEEEecCCccCc
Confidence 88877654333 46778888999999999999876654 57899999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHHHHH
Q 007952 164 DSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFS 225 (583)
Q Consensus 164 D~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~ 225 (583)
|..++..+.+.|++..+ ++.||+.+||+.+ ++.++||||++++.|+++|.|+.+++.+.|.
T Consensus 188 DV~aq~~ir~Flke~n~~~~aTVllTTH~~~-di~~lc~rv~~I~~Gqlv~dg~l~~l~~~f~ 249 (325)
T COG4586 188 DVNAQANIREFLKEYNEERQATVLLTTHIFD-DIATLCDRVLLIDQGQLVFDGTLAQLQEQFG 249 (325)
T ss_pred chhHHHHHHHHHHHHHHhhCceEEEEecchh-hHHHhhhheEEeeCCcEeecccHHHHHHHhC
Confidence 99999999999999875 5899999999965 6899999999999999999999999887764
No 315
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.2e-37 Score=297.76 Aligned_cols=205 Identities=29% Similarity=0.481 Sum_probs=173.4
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCC-----ccccccEEEEccC--CC
Q 007952 4 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-----KSLKSKIGFVTQD--DV 76 (583)
Q Consensus 4 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~-----~~~~~~i~yv~Q~--~~ 76 (583)
+++|+||+|+|++|++||-.+|+|||||||||||++++|.. ++.+|.+.+.|++.. .++|++||+|.-+ ..
T Consensus 41 r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~--~pssg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~ 118 (257)
T COG1119 41 RNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEH--PPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHER 118 (257)
T ss_pred ECCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhccc--CCCCCceeeeeeeccCCcchHHHHHHhCccCHHHHhh
Confidence 56799999999999999999999999999999999999954 356899999998763 3578999999875 44
Q ss_pred CCCCCCHHHHHHHHH--HcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEE
Q 007952 77 LFPHLTVKETLTYAA--LLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLL 154 (583)
Q Consensus 77 ~~~~lTv~e~l~~~~--~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~il 154 (583)
+.+..+|+|-+.-+. ..-.......++..+++..+++.+|+.+.+|.. ...||-||||||.|||||+.+|++|
T Consensus 119 ~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~-----~~~LS~Ge~rrvLiaRALv~~P~LL 193 (257)
T COG1119 119 FRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRP-----FGSLSQGEQRRVLIARALVKDPELL 193 (257)
T ss_pred cccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCc-----hhhcCHhHHHHHHHHHHHhcCCCEE
Confidence 566778888775322 111222122355667789999999999988765 4689999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHC--CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcC
Q 007952 155 FLDEPTSGLDSTTALRIVQMLQDIAEA--GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 216 (583)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~~l~~l~~~--g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 216 (583)
|||||++|||...+..+.+.|.+++.. +.++|++||++. ++-..+++++++++|+++++|.
T Consensus 194 iLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~e-Ei~~~~th~lll~~g~v~~~g~ 256 (257)
T COG1119 194 ILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAE-EIPPCFTHRLLLKEGEVVAQGK 256 (257)
T ss_pred EecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchh-hcccccceEEEeeCCceeeccc
Confidence 999999999999999999999999865 789999999964 6888999999999999999884
No 316
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=5e-37 Score=374.55 Aligned_cols=200 Identities=22% Similarity=0.345 Sum_probs=169.9
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~l 81 (583)
.+++|+|+|++|++||.+||+||||||||||+++|.|... +.+|+|.+||.++.+ .+|++++|||||+.+|+.
T Consensus 1248 ~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~--p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~g- 1324 (1495)
T PLN03232 1248 LPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVE--LEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSG- 1324 (1495)
T ss_pred CCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc--CCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCc-
Confidence 3579999999999999999999999999999999999653 578999999998753 578899999999999986
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCccCcccChHHHHHHHHHHHHHhCCCEE
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-------RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLL 154 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~il 154 (583)
|++|||.+.. ..+. +++.++++..++. +-.|+.+|. ...+||||||||++|||||+++|+||
T Consensus 1325 TIr~NL~~~~------~~sd----eei~~al~~a~l~~~I~~lp~GLdt~v~e-~G~~LSgGQrQrlaLARALLr~~~IL 1393 (1495)
T PLN03232 1325 TVRFNIDPFS------EHND----ADLWEALERAHIKDVIDRNPFGLDAEVSE-GGENFSVGQRQLLSLARALLRRSKIL 1393 (1495)
T ss_pred cHHHHcCCCC------CCCH----HHHHHHHHHcCCHHHHHhCcCCCCceecC-CCCCCCHHHHHHHHHHHHHHhCCCEE
Confidence 9999997531 1233 3355556655553 334666763 45689999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 155 FLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
+||||||+||+.+...|.+.|++.. +++|+|+++|+++. + ..||+|++|++|++++.|+++++++
T Consensus 1394 ILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~t-i-~~~DrIlVL~~G~ivE~Gt~~eLl~ 1458 (1495)
T PLN03232 1394 VLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRLNT-I-IDCDKILVLSSGQVLEYDSPQELLS 1458 (1495)
T ss_pred EEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHH-H-HhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999875 48999999999754 4 5699999999999999999999864
No 317
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-36 Score=335.05 Aligned_cols=201 Identities=27% Similarity=0.449 Sum_probs=166.0
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHH
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVK 84 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~ 84 (583)
+++++|+|+||+|++||+++|+||||||||||||+|+|... +++|+|.++|. ..++|++|++.+++.+||+
T Consensus 12 ~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~--p~~G~i~~~~~-------~~i~~~~q~~~~~~~~tv~ 82 (530)
T PRK15064 12 GAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLE--PSAGNVSLDPN-------ERLGKLRQDQFAFEEFTVL 82 (530)
T ss_pred CCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEecCC-------CEEEEEeccCCcCCCCcHH
Confidence 45679999999999999999999999999999999999653 57899999873 3599999999999999999
Q ss_pred HHHHHHHH-c-----------CCCCC-----------------CCHHHHHHHHHHHHHHcCCCccccccccCccCcccCh
Q 007952 85 ETLTYAAL-L-----------RLPNT-----------------LTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 135 (583)
Q Consensus 85 e~l~~~~~-~-----------~~~~~-----------------~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSg 135 (583)
|++.++.. . ..+.. ....+.+++++++++.+||.+..+. ..+.+|||
T Consensus 83 e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~----~~~~~LSg 158 (530)
T PRK15064 83 DTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHY----GLMSEVAP 158 (530)
T ss_pred HHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhc----CchhhcCH
Confidence 99986421 0 00000 0001234578899999999753321 23579999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeE-EEE
Q 007952 136 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL-LYF 214 (583)
Q Consensus 136 GerqRv~ia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~i-v~~ 214 (583)
||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++ .|.|||++||++. .+.+.||++++|++|++ ++.
T Consensus 159 Gq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsHd~~-~~~~~~d~i~~l~~g~i~~~~ 234 (530)
T PRK15064 159 GWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE---RNSTMIIISHDRH-FLNSVCTHMADLDYGELRVYP 234 (530)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh---CCCeEEEEeCCHH-HHHhhcceEEEEeCCEEEEec
Confidence 999999999999999999999999999999999999999864 5899999999965 57789999999999999 588
Q ss_pred cChhhHHH
Q 007952 215 GKASEAMA 222 (583)
Q Consensus 215 G~~~~~~~ 222 (583)
|++++..+
T Consensus 235 g~~~~~~~ 242 (530)
T PRK15064 235 GNYDEYMT 242 (530)
T ss_pred CCHHHHHH
Confidence 99887653
No 318
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=7.1e-37 Score=373.65 Aligned_cols=199 Identities=22% Similarity=0.359 Sum_probs=169.8
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~lT 82 (583)
+++|+|+|++|++||.+||+|+||||||||+++|.|... +.+|+|.+||.++.+ .+|+++++||||+.+|+. |
T Consensus 1252 ~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~--p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~G-T 1328 (1622)
T PLN03130 1252 PPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVE--LERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSG-T 1328 (1622)
T ss_pred CceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCC--CCCceEEECCEecccCCHHHHHhccEEECCCCccccc-c
Confidence 479999999999999999999999999999999998653 578999999998863 578899999999999986 9
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL-------ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
++|||.+.. ..++ +.+.++++..++ ++-.|+.+|. ...+||||||||++|||||+++|+||+
T Consensus 1329 IreNLd~~~------~~td----eei~~Al~~a~l~~~I~~lp~GLdt~Vge-~G~nLSgGQrQrlaLARALLr~p~ILI 1397 (1622)
T PLN03130 1329 VRFNLDPFN------EHND----ADLWESLERAHLKDVIRRNSLGLDAEVSE-AGENFSVGQRQLLSLARALLRRSKILV 1397 (1622)
T ss_pred HHHHhCcCC------CCCH----HHHHHHHHHcCcHHHHHhCccccCccccC-CCCCCCHHHHHHHHHHHHHHcCCCEEE
Confidence 999997631 1233 334455555444 3345777764 456899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
||||||+||+.+...|.+.|++.. +++|+|+++|+++. + ..||+|++|++|++++.|+++++++
T Consensus 1398 LDEATSaLD~~Te~~Iq~~I~~~~-~~~TvI~IAHRL~t-I-~~~DrIlVLd~G~IvE~Gt~~eLl~ 1461 (1622)
T PLN03130 1398 LDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNT-I-IDCDRILVLDAGRVVEFDTPENLLS 1461 (1622)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEeCChHH-H-HhCCEEEEEECCEEEEeCCHHHHHh
Confidence 999999999999999999999975 48999999999764 4 5699999999999999999999874
No 319
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=4.1e-37 Score=342.35 Aligned_cols=173 Identities=35% Similarity=0.587 Sum_probs=146.4
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc---cccccEEEEccCCCCCCCCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---SLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~---~~~~~i~yv~Q~~~~~~~lT 82 (583)
++++|+|+|+++++||.+||+||||||||||+|+|+|.. ++.+|+|.+||.++.+ .+|+.++||+|++.+|+. |
T Consensus 347 ~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~--~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~-T 423 (529)
T TIGR02868 347 SPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLL--DPLQGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDT-T 423 (529)
T ss_pred CCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCC--CCCCcEEEECCEEhhhHHHHHHhheEEEccCcccccc-c
Confidence 356999999999999999999999999999999999965 3679999999988753 467889999999999986 9
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-------RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
++||+.++. | ..++ ++++++++..++. +-.||.+|+ ....||||||||++|||||+.+|++|+
T Consensus 424 I~eNI~~g~----~-~~~~----e~i~~al~~a~l~~~i~~lp~GldT~ige-~G~~LSGGQrQRiaiARall~~~~ili 493 (529)
T TIGR02868 424 VRDNLRLGR----P-DATD----EELWAALERVGLADWLRSLPDGLDTVLGE-GGARLSGGERQRLALARALLADAPILL 493 (529)
T ss_pred HHHHHhccC----C-CCCH----HHHHHHHHHcCCHHHHHhCcccccchhcc-ccCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999998852 1 1232 3355566655553 445788875 456799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCC
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQP 192 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~ 192 (583)
||||||+||+.++..+.+.|+++. +++|+|+++|++
T Consensus 494 LDE~TSaLD~~te~~I~~~l~~~~-~~~TvIiItHrl 529 (529)
T TIGR02868 494 LDEPTEHLDAGTESELLEDLLAAL-SGKTVVVITHHL 529 (529)
T ss_pred EeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEecCC
Confidence 999999999999999999999864 489999999984
No 320
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=4.9e-36 Score=335.04 Aligned_cols=197 Identities=28% Similarity=0.419 Sum_probs=163.6
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHH
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 85 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e 85 (583)
++.+|+|+||+|++||+++|+|||||||||||++|+|... +++|+|.+++. ..+|||+|++.+++.+||.|
T Consensus 19 ~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~--p~~G~i~~~~~-------~~i~~v~Q~~~~~~~~tv~e 89 (556)
T PRK11819 19 KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK--EFEGEARPAPG-------IKVGYLPQEPQLDPEKTVRE 89 (556)
T ss_pred CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEecCC-------CEEEEEecCCCCCCCCcHHH
Confidence 5789999999999999999999999999999999999753 57899999752 46999999999999999999
Q ss_pred HHHHHHH-c--------------CCCCC-CC-----------------HHHHHHHHHHHHHHcCCCccccccccCccCcc
Q 007952 86 TLTYAAL-L--------------RLPNT-LT-----------------KQQKEKRAIDVINELGLERCQDTMIGGSFVRG 132 (583)
Q Consensus 86 ~l~~~~~-~--------------~~~~~-~~-----------------~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~ 132 (583)
|+.++.. . ..+.. .. ..+..++++++++.+|+.. .+. .+.+
T Consensus 90 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~-----~~~~ 163 (556)
T PRK11819 90 NVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPP-WDA-----KVTK 163 (556)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCc-ccC-----chhh
Confidence 9987531 0 00000 00 0012456788999999953 444 4579
Q ss_pred cChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEE
Q 007952 133 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 212 (583)
Q Consensus 133 LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv 212 (583)
|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++. .|||++||++. .+.+.||+|++|++|+++
T Consensus 164 LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~---~tviiisHd~~-~~~~~~d~i~~l~~g~i~ 239 (556)
T PRK11819 164 LSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP---GTVVAVTHDRY-FLDNVAGWILELDRGRGI 239 (556)
T ss_pred cCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC---CeEEEEeCCHH-HHHhhcCeEEEEeCCEEE
Confidence 99999999999999999999999999999999999999999999873 49999999975 577899999999999986
Q ss_pred -EEcChhhHH
Q 007952 213 -YFGKASEAM 221 (583)
Q Consensus 213 -~~G~~~~~~ 221 (583)
+.|+.++..
T Consensus 240 ~~~g~~~~~~ 249 (556)
T PRK11819 240 PWEGNYSSWL 249 (556)
T ss_pred EecCCHHHHH
Confidence 888877643
No 321
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=9.6e-37 Score=339.43 Aligned_cols=184 Identities=35% Similarity=0.585 Sum_probs=154.9
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~lT 82 (583)
+++|+|+|+++++||.++|+||||||||||+|+|+|... +.+|+|.+||.++.+ .+++.++||+|++.+|+. |
T Consensus 335 ~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~--~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~-t 411 (529)
T TIGR02857 335 APALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVD--PTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAG-T 411 (529)
T ss_pred cccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCc-C
Confidence 579999999999999999999999999999999999653 678999999998753 467889999999999975 9
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-------CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
++||+.++. + ..++ +++++.++..++.+ -.||.+|. ....||||||||++|||+|+++|++++
T Consensus 412 i~~Ni~~~~----~-~~~~----~~i~~a~~~~~l~~~i~~lp~Gldt~v~e-~g~~LSgGq~qri~laRal~~~~~ili 481 (529)
T TIGR02857 412 IAENIRLAR----P-DASD----AEIRRALERAGLDEFVAALPQGLDTLIGE-GGAGLSGGQAQRLALARAFLRDAPLLL 481 (529)
T ss_pred HHHHHhccC----C-CCCH----HHHHHHHHHcCcHHHHHhCcccccchhcc-ccccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999998752 1 1222 33455566655543 34677764 467899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEE
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL 206 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L 206 (583)
||||||+||+.++..+.+.|+++. +++|+|+++|+++ ..+.||+|++|
T Consensus 482 lDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~--~~~~~d~i~~l 529 (529)
T TIGR02857 482 LDEPTAHLDAETEALVTEALRALA-QGRTVLLVTHRLA--LAERADRIVVL 529 (529)
T ss_pred EeCcccccCHHHHHHHHHHHHHhc-CCCEEEEEecCHH--HHHhCCEEEeC
Confidence 999999999999999999999985 5899999999974 35789999875
No 322
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=5.2e-36 Score=304.53 Aligned_cols=213 Identities=26% Similarity=0.463 Sum_probs=185.0
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCC---cccEEEECCccCCc----c---cc-ccEEEEc
Q 007952 4 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT---VGGSITYNDHPYSK----S---LK-SKIGFVT 72 (583)
Q Consensus 4 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~---~~G~I~~~g~~~~~----~---~~-~~i~yv~ 72 (583)
.+...++++|||++++||.+||+|+||||||-..+.+.|+++.+. -+|+|.++|+++-. . .| .+|++++
T Consensus 20 ~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIF 99 (534)
T COG4172 20 GGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIF 99 (534)
T ss_pred CcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEe
Confidence 456789999999999999999999999999999999999886542 47999999998631 2 22 5799999
Q ss_pred cCC--CCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhC
Q 007952 73 QDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIIN 150 (583)
Q Consensus 73 Q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~ 150 (583)
|++ .+.|-.|+.+.+.-..++ ....++++.++++.++|+.+|+.+-.... +.++++|||||||||+||+||+++
T Consensus 100 QEPMtSLNPl~tIg~Qi~E~l~~--Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl--~~yPHeLSGGqRQRVMIAMALan~ 175 (534)
T COG4172 100 QEPMTSLNPLHTIGKQLAEVLRL--HRGLSRAAARARALELLELVGIPEPEKRL--DAYPHELSGGQRQRVMIAMALANE 175 (534)
T ss_pred cccccccCcHhHHHHHHHHHHHH--HhcccHHHHHHHHHHHHHHcCCCchhhhh--hhCCcccCcchhhHHHHHHHHcCC
Confidence 998 578888988877665443 45677888899999999999998755433 568999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 151 PSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 151 p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|++||.||||++||...+.+|+++|++|.++ |..++++|||.+ -+.+++|+|.+|.+|++++.|+.+++.
T Consensus 176 P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~-iVr~~ADrV~VM~~G~ivE~~~t~~lF 246 (534)
T COG4172 176 PDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLG-IVRKFADRVYVMQHGEIVETGTTETLF 246 (534)
T ss_pred CCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHH-HHHHhhhhEEEEeccEEeecCcHHHHh
Confidence 9999999999999999999999999999765 999999999975 477889999999999999999988764
No 323
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=3.5e-36 Score=331.84 Aligned_cols=204 Identities=23% Similarity=0.399 Sum_probs=162.7
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-----cccccEEEEccCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-----SLKSKIGFVTQDDVLFP 79 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-----~~~~~i~yv~Q~~~~~~ 79 (583)
+++.+|+|+||++++||+++|+||||||||||+|+|+|.. +++.+|+|.++|++... ..++.++|++|++.+++
T Consensus 271 ~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~-~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 349 (490)
T PRK10938 271 NDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDH-PQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDY 349 (490)
T ss_pred CCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCC-CcccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhc
Confidence 3457999999999999999999999999999999999954 22258999999986531 23567999999876543
Q ss_pred --CCCHHHHHHHHHHc--CCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCcccChHHHHHHHHHHHHHhCCCEE
Q 007952 80 --HLTVKETLTYAALL--RLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLL 154 (583)
Q Consensus 80 --~lTv~e~l~~~~~~--~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~il 154 (583)
..|+++++.+.... ....... ++.+++++++++.+||.+ ..++ .+.+|||||||||+||++|+.+|++|
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~-----~~~~LSgGq~qrv~la~al~~~p~ll 423 (490)
T PRK10938 350 RVSTSVRNVILSGFFDSIGIYQAVS-DRQQKLAQQWLDILGIDKRTADA-----PFHSLSWGQQRLALIVRALVKHPTLL 423 (490)
T ss_pred ccCCcHHHHHHhccccccccccCCC-HHHHHHHHHHHHHcCCchhhccC-----chhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 35777776543211 1111112 233557889999999986 5554 45799999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCC-cEEEEEecCCChHHHh-hcCeEEEEcCCeEEEEcC
Q 007952 155 FLDEPTSGLDSTTALRIVQMLQDIAEAG-KTVVTTIHQPSSRLFH-KFDKLILLGKGSLLYFGK 216 (583)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~~l~~l~~~g-~tii~~~H~~~~~i~~-~~D~v~~L~~G~iv~~G~ 216 (583)
+|||||+|||+.++..+.+.|++++++| .|||++||++. ++.+ .+|++++|++|++++.-.
T Consensus 424 lLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~-~~~~~~~d~v~~l~~G~i~~~~~ 486 (490)
T PRK10938 424 ILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAE-DAPACITHRLEFVPDGDIYRYVQ 486 (490)
T ss_pred EEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchh-hhhhhhheeEEEecCCceEEeec
Confidence 9999999999999999999999998776 47999999975 4655 589999999999877543
No 324
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=4.2e-36 Score=335.31 Aligned_cols=189 Identities=23% Similarity=0.306 Sum_probs=158.7
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~l 81 (583)
++++|+|+|+++++||.++|+||||||||||+++|+|.. ++.+|+|.+||+++.+ .+++.++||+||+.+|+.
T Consensus 335 ~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~--~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~- 411 (547)
T PRK10522 335 NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLY--QPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQ- 411 (547)
T ss_pred CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHH-
Confidence 356999999999999999999999999999999999965 3678999999998753 467889999999998875
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCc--cCcccChHHHHHHHHHHHHHhCCCEEEEeCC
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGS--FVRGVSGGERKRVCIGNEIIINPSLLFLDEP 159 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~--~~~~LSgGerqRv~ia~~L~~~p~illLDEP 159 (583)
|++|| . . ...++.+++.++.+++.+..+. ++. ...+||||||||++|||+++++|++|+||||
T Consensus 412 ti~~n---~------~----~~~~~~~~~~~~~~~l~~~~~~--~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ 476 (547)
T PRK10522 412 LLGPE---G------K----PANPALVEKWLERLKMAHKLEL--EDGRISNLKLSKGQKKRLALLLALAEERDILLLDEW 476 (547)
T ss_pred hhccc---c------C----chHHHHHHHHHHHcCCchhhhc--cccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 78776 1 0 1223457788899988764332 211 1358999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEE
Q 007952 160 TSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 214 (583)
Q Consensus 160 tsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 214 (583)
||+||+.++..+.+.|.+..+ .|+|+|+++|+++ ..+.||++++|++|++++.
T Consensus 477 ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~--~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 477 AADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDH--YFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechH--HHHhCCEEEEEECCEEEEe
Confidence 999999999999999987643 5899999999974 4678999999999999866
No 325
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=6.4e-36 Score=294.69 Aligned_cols=173 Identities=28% Similarity=0.496 Sum_probs=153.5
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHHH
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKET 86 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~ 86 (583)
..+++||||++++||+++|+|+||||||||-|+|.|+.. +++|+|+++|+++....
T Consensus 26 v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~--pt~G~i~f~g~~i~~~~---------------------- 81 (268)
T COG4608 26 VKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEE--PTSGEILFEGKDITKLS---------------------- 81 (268)
T ss_pred eEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcC--CCCceEEEcCcchhhcc----------------------
Confidence 479999999999999999999999999999999999653 67999999999854321
Q ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHH
Q 007952 87 LTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDST 166 (583)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~ 166 (583)
+++..+++.++|+.+|+... ..+++++++|||||||+.|||||+.+|+++++|||+|.||..
T Consensus 82 --------------~~~~~~~v~elL~~Vgl~~~----~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvS 143 (268)
T COG4608 82 --------------KEERRERVLELLEKVGLPEE----FLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVS 143 (268)
T ss_pred --------------hhHHHHHHHHHHHHhCCCHH----HhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchh
Confidence 34556789999999998642 123578999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 167 TALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 167 ~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
.+.+++++|+++.++ |.|.++++||.+ .+..++|++.+|..|++|+.|+.+++..
T Consensus 144 iqaqIlnLL~dlq~~~~lt~lFIsHDL~-vv~~isdri~VMy~G~iVE~g~~~~~~~ 199 (268)
T COG4608 144 VQAQILNLLKDLQEELGLTYLFISHDLS-VVRYISDRIAVMYLGKIVEIGPTEEVFS 199 (268)
T ss_pred HHHHHHHHHHHHHHHhCCeEEEEEEEHH-hhhhhcccEEEEecCceeEecCHHHHhh
Confidence 999999999999865 999999999965 5788999999999999999999998753
No 326
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.8e-36 Score=331.95 Aligned_cols=191 Identities=23% Similarity=0.385 Sum_probs=162.0
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCC--CCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDV--LFPHLT 82 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~--~~~~lT 82 (583)
+++.+|+|+|+++++||+++|+||||||||||+|+|+|... +.+|+|.++|. +.+||++|+.. +++.+|
T Consensus 330 ~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~--p~~G~i~~~~~-------~~i~~~~q~~~~~~~~~~t 400 (530)
T PRK15064 330 DNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELE--PDSGTVKWSEN-------ANIGYYAQDHAYDFENDLT 400 (530)
T ss_pred CCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCc-------eEEEEEcccccccCCCCCc
Confidence 34679999999999999999999999999999999999653 57899999873 46999999864 567799
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 161 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPts 161 (583)
|+|++.+.. .. ...+++++++++.+|+. +..++ .+.+||||||||++||++|+.+|++|+|||||+
T Consensus 401 ~~~~~~~~~---~~-----~~~~~~~~~~l~~~~l~~~~~~~-----~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~ 467 (530)
T PRK15064 401 LFDWMSQWR---QE-----GDDEQAVRGTLGRLLFSQDDIKK-----SVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTN 467 (530)
T ss_pred HHHHHHHhc---cC-----CccHHHHHHHHHHcCCChhHhcC-----cccccCHHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 999986421 11 11235678899999994 44554 467999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEE-EEcChhhHH
Q 007952 162 GLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL-YFGKASEAM 221 (583)
Q Consensus 162 gLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv-~~G~~~~~~ 221 (583)
|||+.++..+.+.|+++ +.|||++|||+. .+.+.||++++|++|+++ +.|++++..
T Consensus 468 ~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~-~~~~~~d~i~~l~~g~i~~~~g~~~~~~ 524 (530)
T PRK15064 468 HMDMESIESLNMALEKY---EGTLIFVSHDRE-FVSSLATRIIEITPDGVVDFSGTYEEYL 524 (530)
T ss_pred CCCHHHHHHHHHHHHHC---CCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEcCCCHHHHH
Confidence 99999999999999886 359999999965 577889999999999998 889887754
No 327
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=5.3e-36 Score=365.44 Aligned_cols=199 Identities=23% Similarity=0.393 Sum_probs=170.1
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~lT 82 (583)
+.+|+|+||+|++||.+||+|+||||||||+++|.|... +.+|+|.+||.++.+ .+|+.++|||||+.+|+. |
T Consensus 1323 ~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~--p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~g-T 1399 (1560)
T PTZ00243 1323 PLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVE--VCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDG-T 1399 (1560)
T ss_pred CceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEcccCCHHHHHhcceEECCCCccccc-c
Confidence 459999999999999999999999999999999999653 578999999998853 578899999999999986 9
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCccCcccChHHHHHHHHHHHHHhC-CCEE
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-------CQDTMIGGSFVRGVSGGERKRVCIGNEIIIN-PSLL 154 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~-p~il 154 (583)
++|||... ...+. +.+.++++..|+.+ -.|+.+|. ...+||||||||++|||||+++ |+||
T Consensus 1400 IreNIdp~------~~~sd----eeI~~Al~~a~l~~~I~~lp~Gldt~vge-~G~nLSgGQrQrLaLARALL~~~~~IL 1468 (1560)
T PTZ00243 1400 VRQNVDPF------LEASS----AEVWAALELVGLRERVASESEGIDSRVLE-GGSNYSVGQRQLMCMARALLKKGSGFI 1468 (1560)
T ss_pred HHHHhCcc------cCCCH----HHHHHHHHHCCChHHHhhCcccccccccC-CcCcCCHHHHHHHHHHHHHhcCCCCEE
Confidence 99999532 12232 44666777776653 34677764 4568999999999999999996 8999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 155 FLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
+||||||+||+.+...|.+.|++.. +++|||+++|+++ ....||+|++|++|++++.|+++++++
T Consensus 1469 lLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~DrIlVLd~G~VvE~Gt~~eLl~ 1533 (1560)
T PTZ00243 1469 LMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRLH--TVAQYDKIIVMDHGAVAEMGSPRELVM 1533 (1560)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccHH--HHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999864 4799999999975 356799999999999999999999864
No 328
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=5.5e-36 Score=365.97 Aligned_cols=199 Identities=24% Similarity=0.341 Sum_probs=169.3
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~lT 82 (583)
+.+|+|+|++|++||.+||+|+||||||||+++|.|... +.+|+|.+||.++.+ .+|++++|||||+.+|+. |
T Consensus 1299 ~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~--~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~g-T 1375 (1522)
T TIGR00957 1299 DLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINE--SAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSG-S 1375 (1522)
T ss_pred cccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcc--CCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCc-c
Confidence 479999999999999999999999999999999998653 578999999999863 578899999999999987 9
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-------RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
+||||.... ..+++ .+.++++..++. +-.|+.+|. ...+||||||||++|||||+++|+||+
T Consensus 1376 Ir~NLdp~~------~~sde----ei~~al~~a~l~~~I~~lp~GLdt~v~e-~G~~LSgGQrQrl~LARALLr~~~ILi 1444 (1522)
T TIGR00957 1376 LRMNLDPFS------QYSDE----EVWWALELAHLKTFVSALPDKLDHECAE-GGENLSVGQRQLVCLARALLRKTKILV 1444 (1522)
T ss_pred HHHHcCccc------CCCHH----HHHHHHHHcCcHHHHhhCccCCCceecC-CCCcCCHHHHHHHHHHHHHHcCCCEEE
Confidence 999996311 12333 345566665553 335676763 456899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
||||||+||+.+...|.+.|++.. +++|+|+++|+++. ...+|+|++|++|++++.|+++++++
T Consensus 1445 LDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~t--i~~~DrIlVld~G~IvE~G~~~eLl~ 1508 (1522)
T TIGR00957 1445 LDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHRLNT--IMDYTRVIVLDKGEVAEFGAPSNLLQ 1508 (1522)
T ss_pred EECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH--HHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999865 48999999999754 45699999999999999999999875
No 329
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=1.4e-35 Score=331.28 Aligned_cols=198 Identities=28% Similarity=0.388 Sum_probs=161.8
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHH
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 85 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e 85 (583)
++.+|+|+|++|++||+++|+|||||||||||++|+|... +++|+|.+++. ..+|||+|++.+++.+||+|
T Consensus 17 ~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~--p~~G~i~~~~~-------~~i~~v~Q~~~~~~~~tv~e 87 (552)
T TIGR03719 17 KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK--EFNGEARPAPG-------IKVGYLPQEPQLDPTKTVRE 87 (552)
T ss_pred CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEecCC-------CEEEEEeccCCCCCCCcHHH
Confidence 5679999999999999999999999999999999999653 57899999752 46999999999999999999
Q ss_pred HHHHHHHc-CC-----------CCCCCHH---------------------HHHHHHHHHHHHcCCCccccccccCccCcc
Q 007952 86 TLTYAALL-RL-----------PNTLTKQ---------------------QKEKRAIDVINELGLERCQDTMIGGSFVRG 132 (583)
Q Consensus 86 ~l~~~~~~-~~-----------~~~~~~~---------------------~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~ 132 (583)
|+.++... +. ......+ +..++++++++.+|+.. .++ .+..
T Consensus 88 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~-----~~~~ 161 (552)
T TIGR03719 88 NVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPP-WDA-----DVTK 161 (552)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCc-ccC-----chhh
Confidence 99875321 00 0000010 01245667788888853 333 4679
Q ss_pred cChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEE
Q 007952 133 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 212 (583)
Q Consensus 133 LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv 212 (583)
|||||||||+||++|+.+|++|+|||||++||+.++..+.+.|+++ +.|||++||++. .+.+.||++++|++|+++
T Consensus 162 LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~---~~tvIiisHd~~-~~~~~~d~v~~l~~g~i~ 237 (552)
T TIGR03719 162 LSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY---PGTVVAVTHDRY-FLDNVAGWILELDRGRGI 237 (552)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC---CCeEEEEeCCHH-HHHhhcCeEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999876 359999999965 577889999999999975
Q ss_pred -EEcChhhHHH
Q 007952 213 -YFGKASEAMA 222 (583)
Q Consensus 213 -~~G~~~~~~~ 222 (583)
+.|+.++..+
T Consensus 238 ~~~g~~~~~~~ 248 (552)
T TIGR03719 238 PWEGNYSSWLE 248 (552)
T ss_pred EecCCHHHHHH
Confidence 7898887544
No 330
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=9.2e-36 Score=360.79 Aligned_cols=197 Identities=26% Similarity=0.475 Sum_probs=159.9
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEEC-CccCCc----cccccEEEEccCCCCCCCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN-DHPYSK----SLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~-g~~~~~----~~~~~i~yv~Q~~~~~~~l 81 (583)
+++|+|+|+++++||++||+||||||||||+++|+|... +.+|+|.++ |+++.+ .+|+.||||+|++.+|+.
T Consensus 398 ~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~--p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~- 474 (1466)
T PTZ00265 398 VEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYD--PTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSN- 474 (1466)
T ss_pred CceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhcc--CCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhc-
Confidence 579999999999999999999999999999999999653 679999995 676642 357889999999999985
Q ss_pred CHHHHHHHHHHc-CC---------CC-----------------------------CC---------CHHHHHHHHHHHHH
Q 007952 82 TVKETLTYAALL-RL---------PN-----------------------------TL---------TKQQKEKRAIDVIN 113 (583)
Q Consensus 82 Tv~e~l~~~~~~-~~---------~~-----------------------------~~---------~~~~~~~~v~~~l~ 113 (583)
||+||+.++... +. +. .. .....++++.++++
T Consensus 475 TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~ 554 (1466)
T PTZ00265 475 SIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSK 554 (1466)
T ss_pred cHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHH
Confidence 999999986310 00 00 00 00012245667777
Q ss_pred HcCCCc-------cccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEE
Q 007952 114 ELGLER-------CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTV 185 (583)
Q Consensus 114 ~lgL~~-------~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~-~g~ti 185 (583)
.+++.+ ..||.+|. ...+||||||||++|||||+.+|+||+||||||+||+.++..+.+.|+++++ +|+|+
T Consensus 555 ~~~l~~~i~~lp~g~dT~vg~-~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~Tv 633 (1466)
T PTZ00265 555 KVLIHDFVSALPDKYETLVGS-NASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRIT 633 (1466)
T ss_pred HhCcHHHHHhCccccCceeCC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEE
Confidence 776643 34666764 4778999999999999999999999999999999999999999999999976 58999
Q ss_pred EEEecCCChHHHhhcCeEEEEcCC
Q 007952 186 VTTIHQPSSRLFHKFDKLILLGKG 209 (583)
Q Consensus 186 i~~~H~~~~~i~~~~D~v~~L~~G 209 (583)
|+++|+++. + +.||+|++|++|
T Consensus 634 IiIsHrls~-i-~~aD~Iivl~~g 655 (1466)
T PTZ00265 634 IIIAHRLST-I-RYANTIFVLSNR 655 (1466)
T ss_pred EEEeCCHHH-H-HhCCEEEEEeCC
Confidence 999999753 4 789999999986
No 331
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=1.1e-35 Score=332.39 Aligned_cols=191 Identities=21% Similarity=0.282 Sum_probs=159.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~lT 82 (583)
+.+|+|+|+++++||.++|+||||||||||+++|+|... +++|+|.+||.++.+ .+++.++||+||+.+|+. |
T Consensus 355 ~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~--p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~-t 431 (555)
T TIGR01194 355 GFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYI--PQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDD-L 431 (555)
T ss_pred CceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhh-h
Confidence 369999999999999999999999999999999999653 679999999998753 457889999999998875 8
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccc-cCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMI-GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 161 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~i-g~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPts 161 (583)
++||.. + +..++++++.++.+++.+..+..- |-.....||||||||++|||+++.+|++++|||||+
T Consensus 432 i~~n~~-------~-----~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE~ts 499 (555)
T TIGR01194 432 IGPDEG-------E-----HASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAA 499 (555)
T ss_pred hhcccc-------c-----chhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 888731 1 123445778899999876544322 112236799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHH-HHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEE
Q 007952 162 GLDSTTALRIVQMLQ-DIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 214 (583)
Q Consensus 162 gLD~~~~~~i~~~l~-~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 214 (583)
+||+.++..+.+.+. .++.+|+|+|+++|+++ ..+.||+|++|++|++++.
T Consensus 500 ~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~--~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 500 DQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQ--YFELADQIIKLAAGCIVKD 551 (555)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH--HHHhCCEEEEEECCEEEEe
Confidence 999999999998764 46567999999999975 4578999999999999753
No 332
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=2.9e-35 Score=279.81 Aligned_cols=161 Identities=27% Similarity=0.380 Sum_probs=135.1
Q ss_pred CccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCC
Q 007952 3 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 3 ~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lT 82 (583)
+...+++|+|+|+++++|++++|+||||||||||||+|.+ .+|++.++|... ...++.++|++|
T Consensus 4 ~~~~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~------~~G~v~~~~~~~-~~~~~~~~~~~q--------- 67 (176)
T cd03238 4 SGANVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY------ASGKARLISFLP-KFSRNKLIFIDQ--------- 67 (176)
T ss_pred cceeeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh------cCCcEEECCccc-ccccccEEEEhH---------
Confidence 3456789999999999999999999999999999999863 379999988732 222445888887
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCccCcccChHHHHHHHHHHHHHhC--CCEEEEeCC
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC-QDTMIGGSFVRGVSGGERKRVCIGNEIIIN--PSLLFLDEP 159 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~ig~~~~~~LSgGerqRv~ia~~L~~~--p~illLDEP 159 (583)
.+.++.++|.+. .++ .++.||||||||++||++|+.+ |++++||||
T Consensus 68 --------------------------~~~l~~~~L~~~~~~~-----~~~~LSgGq~qrl~laral~~~~~p~llLlDEP 116 (176)
T cd03238 68 --------------------------LQFLIDVGLGYLTLGQ-----KLSTLSGGELQRVKLASELFSEPPGTLFILDEP 116 (176)
T ss_pred --------------------------HHHHHHcCCCccccCC-----CcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCC
Confidence 235677788642 343 4679999999999999999999 999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEE
Q 007952 160 TSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 212 (583)
Q Consensus 160 tsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv 212 (583)
|+|||+.++..+.+.|++++++|+|||++||++.. + +.||++++|++|+..
T Consensus 117 t~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~-~-~~~d~i~~l~~g~~~ 167 (176)
T cd03238 117 STGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDV-L-SSADWIIDFGPGSGK 167 (176)
T ss_pred cccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-H-HhCCEEEEECCCCCC
Confidence 99999999999999999998789999999999753 4 679999999765443
No 333
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=5.1e-36 Score=278.39 Aligned_cols=209 Identities=27% Similarity=0.443 Sum_probs=180.2
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECC-ccCCc-----cccccEEEEccCCCC
Q 007952 4 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND-HPYSK-----SLKSKIGFVTQDDVL 77 (583)
Q Consensus 4 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g-~~~~~-----~~~~~i~yv~Q~~~~ 77 (583)
-+.-.+|+|+||++.+||+-+|+|||||||||++++|+|.. ++.+|+++++| .++++ ..+..||--+|.+..
T Consensus 15 F~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKt--rp~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtV 92 (249)
T COG4674 15 FGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKT--RPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTV 92 (249)
T ss_pred EcceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccC--CCCcceEEEcCchhhccCCHHHHHHhccCccccCCee
Confidence 35668999999999999999999999999999999999964 46789999999 66643 246679999999999
Q ss_pred CCCCCHHHHHHHHHHcCCCC-----CCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCC
Q 007952 78 FPHLTVKETLTYAALLRLPN-----TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPS 152 (583)
Q Consensus 78 ~~~lTv~e~l~~~~~~~~~~-----~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ 152 (583)
|+.+||+|||+.+.....+- .....+.+++++++|...||.+.++.. ...||-||||++.|++-++++|+
T Consensus 93 fe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~-----A~~LSHGqKQwLEIGMll~Q~P~ 167 (249)
T COG4674 93 FENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRL-----AALLSHGQKQWLEIGMLLAQDPK 167 (249)
T ss_pred hhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhh-----hhhhccchhhhhhhheeeccCCc
Confidence 99999999999875422110 012334556899999999999888764 45899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 153 LLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 153 illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
+|+||||++|+--....+.-++|++++. +++|+++.||.. -+.+++|+|.+|++|.+...|+.+++.
T Consensus 168 lLLlDEPvAGMTd~Et~~taeLl~~la~-~hsilVVEHDM~-Fvr~~A~~VTVlh~G~VL~EGsld~v~ 234 (249)
T COG4674 168 LLLLDEPVAGMTDAETEKTAELLKSLAG-KHSILVVEHDMG-FVREIADKVTVLHEGSVLAEGSLDEVQ 234 (249)
T ss_pred EEEecCccCCCcHHHHHHHHHHHHHHhc-CceEEEEeccHH-HHHHhhheeEEEeccceeecccHHHhh
Confidence 9999999999999999999999999985 689999999964 578899999999999999999998874
No 334
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.7e-36 Score=311.49 Aligned_cols=207 Identities=32% Similarity=0.527 Sum_probs=175.6
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCC----ccccccEEEEccCCCCCC
Q 007952 4 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSLKSKIGFVTQDDVLFP 79 (583)
Q Consensus 4 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~----~~~~~~i~yv~Q~~~~~~ 79 (583)
..+|++|+||||++.||+.+|++||||+||||++|+|-... + ..+|.|.+||++++ ..+|+.||.||||..+|.
T Consensus 548 ~p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRff-d-v~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFN 625 (790)
T KOG0056|consen 548 DPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFF-D-VNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFN 625 (790)
T ss_pred CCCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHh-h-ccCceEEEcCchHHHHHHHHHHHhcCcccCcceeec
Confidence 35789999999999999999999999999999999999643 2 46899999999985 357899999999999998
Q ss_pred CCCHHHHHHHHHHcCCCCCCCHHHHHHHH--HHHH-HHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEE
Q 007952 80 HLTVKETLTYAALLRLPNTLTKQQKEKRA--IDVI-NELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFL 156 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v--~~~l-~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illL 156 (583)
+ |+..|+.|+- | +.+.++..+.+ .++= +.++..+-.+|++|.+ .-.|||||||||+|||+++.+|.+++|
T Consensus 626 d-TI~yNIryak----~-~AsneevyaAAkAA~IHdrIl~fPegY~t~VGER-GLkLSGGEKQRVAiARtiLK~P~iIlL 698 (790)
T KOG0056|consen 626 D-TILYNIRYAK----P-SASNEEVYAAAKAAQIHDRILQFPEGYNTRVGER-GLKLSGGEKQRVAIARTILKAPSIILL 698 (790)
T ss_pred c-eeeeheeecC----C-CCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhc-ccccCCcchhhHHHHHHHhcCCcEEEE
Confidence 7 9999999862 2 22344443322 2222 3467888889999854 456999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 157 DEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 157 DEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
||.||+||..+.+.|...|.++++ ++|-|++.|..+. + -.+|.|+++++|+|++.|..+|++.
T Consensus 699 DEATSALDT~tER~IQaaL~rlca-~RTtIVvAHRLST-i-vnAD~ILvi~~G~IvErG~HeeLl~ 761 (790)
T KOG0056|consen 699 DEATSALDTNTERAIQAALARLCA-NRTTIVVAHRLST-I-VNADLILVISNGRIVERGRHEELLK 761 (790)
T ss_pred cchhhhcCCccHHHHHHHHHHHhc-CCceEEEeeeehh-e-ecccEEEEEeCCeEeecCcHHHHHh
Confidence 999999999999999999999986 7888999999765 4 3589999999999999999999875
No 335
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=2.1e-35 Score=297.81 Aligned_cols=189 Identities=27% Similarity=0.386 Sum_probs=157.9
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEE-----------ECCccCCcc---cc---ccEEE
Q 007952 8 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSIT-----------YNDHPYSKS---LK---SKIGF 70 (583)
Q Consensus 8 ~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~-----------~~g~~~~~~---~~---~~i~y 70 (583)
.+|+|+| .+++||+++|+||||||||||||+|+|... +++|+|. ++|+++.+. .+ ..++|
T Consensus 15 ~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~--p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~ 91 (255)
T cd03236 15 FKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLK--PNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIV 91 (255)
T ss_pred hhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcC--CCCceEeeccccchhhhhccCchhhhhhHHhhhcccceee
Confidence 5999999 599999999999999999999999999753 6799996 788776421 11 24789
Q ss_pred EccCCCCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhC
Q 007952 71 VTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIIN 150 (583)
Q Consensus 71 v~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~ 150 (583)
++|+..+++. ++.+++.+.. .....++++.++++.+|+++..++ .+..||||||||++||++|+.+
T Consensus 92 ~~~~~~~~~~-~~~~~i~~~l--------~~~~~~~~~~~~l~~~gl~~~~~~-----~~~~LS~G~~qrv~laral~~~ 157 (255)
T cd03236 92 KPQYVDLIPK-AVKGKVGELL--------KKKDERGKLDELVDQLELRHVLDR-----NIDQLSGGELQRVAIAAALARD 157 (255)
T ss_pred ecchhccCch-HHHHHHHHHh--------chhHHHHHHHHHHHHcCCchhhcC-----ChhhCCHHHHHHHHHHHHHHhC
Confidence 9999888884 8888887642 122334668899999999876654 3578999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEc
Q 007952 151 PSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 215 (583)
Q Consensus 151 p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 215 (583)
|++++|||||+|||+.++..+.+.|++++++|+|||+++|++. .+.++||++++|+ |++.+.|
T Consensus 158 p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~-~~~~~ad~i~~l~-~~~~~~~ 220 (255)
T cd03236 158 ADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLA-VLDYLSDYIHCLY-GEPGAYG 220 (255)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEC-CCCCcce
Confidence 9999999999999999999999999999888999999999964 4667899999994 6666544
No 336
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=3.7e-35 Score=357.77 Aligned_cols=199 Identities=23% Similarity=0.385 Sum_probs=170.4
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~l 81 (583)
.+.+|+|+|++|++||.+||+|+||||||||+++|.|... .+|+|.+||.++.+ .+|++++|||||+.+|+.
T Consensus 1231 ~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~---~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~G- 1306 (1490)
T TIGR01271 1231 GRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS---TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSG- 1306 (1490)
T ss_pred CcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCcc-
Confidence 4679999999999999999999999999999999999652 58999999998863 478899999999999986
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCccCcccChHHHHHHHHHHHHHhCCCEE
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-------CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLL 154 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~il 154 (583)
|+||||.... ..+ ++++.++++..+|.+ -.|+.+|. ...+||||||||++|||||+++|+||
T Consensus 1307 TIR~NLdp~~------~~t----deei~~aL~~~~L~~~i~~lp~GLdt~v~e-~G~nLSgGQrQrL~LARALLr~~~IL 1375 (1490)
T TIGR01271 1307 TFRKNLDPYE------QWS----DEEIWKVAEEVGLKSVIEQFPDKLDFVLVD-GGYVLSNGHKQLMCLARSILSKAKIL 1375 (1490)
T ss_pred CHHHHhCccc------CCC----HHHHHHHHHHCCCHHHHHhCcccccccccc-CCCcCCHHHHHHHHHHHHHhCCCCEE
Confidence 9999995421 122 345667777777643 35666763 45679999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 155 FLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
+||||||+||+.+...|.+.|++.. +++|||+++|+++. ...||+|++|++|++++.|+++++++
T Consensus 1376 lLDEaTS~lD~~Te~~I~~~L~~~~-~~~TvI~IaHRl~t--i~~~DrIlvL~~G~ivE~g~p~~Ll~ 1440 (1490)
T TIGR01271 1376 LLDEPSAHLDPVTLQIIRKTLKQSF-SNCTVILSEHRVEA--LLECQQFLVIEGSSVKQYDSIQKLLN 1440 (1490)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH--HHhCCEEEEEECCEEEEeCCHHHHHc
Confidence 9999999999999999999999865 47999999999753 45699999999999999999999863
No 337
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.3e-34 Score=280.14 Aligned_cols=203 Identities=23% Similarity=0.339 Sum_probs=180.6
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEcc-CCCCCCCCCH
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQ-DDVLFPHLTV 83 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q-~~~~~~~lTv 83 (583)
....+|+||||++++||.+||+|+||||||||||+|+|.. +|++|+|.++|+... +.. .-.+-|.+|.
T Consensus 38 ~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~--~Pt~G~v~v~G~v~~---------li~lg~Gf~pelTG 106 (249)
T COG1134 38 AEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIY--KPTSGKVKVTGKVAP---------LIELGAGFDPELTG 106 (249)
T ss_pred ceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCcc--CCCCceEEEcceEeh---------hhhcccCCCcccch
Confidence 4567999999999999999999999999999999999965 478999999986421 111 1245577999
Q ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCC
Q 007952 84 KETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGL 163 (583)
Q Consensus 84 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgL 163 (583)
+||+.+.+.+. .+++++.+++++++++.-+|.+..|. +++++|.||+-|+++|.+...+|+||++||-.+--
T Consensus 107 reNi~l~~~~~---G~~~~ei~~~~~eIieFaELG~fi~~-----PvktYSSGM~aRLaFsia~~~~pdILllDEvlavG 178 (249)
T COG1134 107 RENIYLRGLIL---GLTRKEIDEKVDEIIEFAELGDFIDQ-----PVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVG 178 (249)
T ss_pred HHHHHHHHHHh---CccHHHHHHHHHHHHHHHHHHHHhhC-----chhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcC
Confidence 99999876653 46789999999999999999988886 46899999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHHHHHhc
Q 007952 164 DSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSI 227 (583)
Q Consensus 164 D~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~~ 227 (583)
|+.-+++..+.++++.++++|||+++|++. .+.++||++++|++|++.+.|+++++.++|+..
T Consensus 179 D~~F~~K~~~rl~e~~~~~~tiv~VSHd~~-~I~~~Cd~~i~l~~G~i~~~G~~~~vi~~Y~~~ 241 (249)
T COG1134 179 DAAFQEKCLERLNELVEKNKTIVLVSHDLG-AIKQYCDRAIWLEHGQIRMEGSPEEVIPAYEED 241 (249)
T ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhcCeeEEEeCCEEEEcCCHHHHHHHHHHh
Confidence 999999999999999888999999999965 589999999999999999999999999998764
No 338
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=7.8e-35 Score=325.37 Aligned_cols=192 Identities=24% Similarity=0.395 Sum_probs=158.2
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCC-CCCCCCCH
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDD-VLFPHLTV 83 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~-~~~~~lTv 83 (583)
+++.+|+|+|++|++||+++|+||||||||||+++|+|... +++|+|.+++. ..+||++|+. .+++.+||
T Consensus 335 ~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~--p~~G~i~~~~~-------~~i~~v~q~~~~~~~~~tv 405 (556)
T PRK11819 335 GDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQ--PDSGTIKIGET-------VKLAYVDQSRDALDPNKTV 405 (556)
T ss_pred CCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCc-------eEEEEEeCchhhcCCCCCH
Confidence 44679999999999999999999999999999999999653 67899999542 2599999996 78889999
Q ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCC
Q 007952 84 KETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 162 (583)
Q Consensus 84 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsg 162 (583)
+|++.+...... .... +..+.++++.+|+.+ ..++ .+.+||||||||++||++|+.+|++|+|||||+|
T Consensus 406 ~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~-----~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~ 475 (556)
T PRK11819 406 WEEISGGLDIIK---VGNR--EIPSRAYVGRFNFKGGDQQK-----KVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTND 475 (556)
T ss_pred HHHHHhhccccc---cccc--HHHHHHHHHhCCCChhHhcC-----chhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCC
Confidence 999988643211 1111 223457899999964 3444 4579999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcC-CeEE-EEcChhh
Q 007952 163 LDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK-GSLL-YFGKASE 219 (583)
Q Consensus 163 LD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~-G~iv-~~G~~~~ 219 (583)
||+.++..+.+.|+++. | |||++||++. .+.+.||++++|++ |++. +.|+.++
T Consensus 476 LD~~~~~~l~~~l~~~~--~-tvi~vtHd~~-~~~~~~d~i~~l~~~g~~~~~~g~~~~ 530 (556)
T PRK11819 476 LDVETLRALEEALLEFP--G-CAVVISHDRW-FLDRIATHILAFEGDSQVEWFEGNFQE 530 (556)
T ss_pred CCHHHHHHHHHHHHhCC--C-eEEEEECCHH-HHHHhCCEEEEEECCCeEEEecCCHHH
Confidence 99999999999999873 4 8999999965 57789999999986 7776 5666544
No 339
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=3.3e-35 Score=277.08 Aligned_cols=203 Identities=28% Similarity=0.407 Sum_probs=167.9
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCcc----ccccEEEEccCC--CCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS----LKSKIGFVTQDD--VLF 78 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~----~~~~i~yv~Q~~--~~~ 78 (583)
.++++|+++|++|+.|+++.|+|.||||||||+|+|+|.+. +++|+|.++|.++++. ....++-|+||+ ..+
T Consensus 17 ~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~--~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~ 94 (263)
T COG1101 17 LEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLK--PTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTA 94 (263)
T ss_pred hHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccc--cCCceEEECceecccCCHHHHhhHHHHHhcchhhCCc
Confidence 46889999999999999999999999999999999999764 6899999999998752 234578899997 469
Q ss_pred CCCCHHHHHHHHHHcCCCCCCCH---HHHHHHHHHHHHHc--CCCccccccccCccCcccChHHHHHHHHHHHHHhCCCE
Q 007952 79 PHLTVKETLTYAALLRLPNTLTK---QQKEKRAIDVINEL--GLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSL 153 (583)
Q Consensus 79 ~~lTv~e~l~~~~~~~~~~~~~~---~~~~~~v~~~l~~l--gL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~i 153 (583)
+.||+.||+..+..-...+.++. ....+...+-++.+ ||++..++.+| -|||||||-+++++|-++.|+|
T Consensus 95 ~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~ig-----lLSGGQRQalsL~MAtl~~pki 169 (263)
T COG1101 95 PELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIG-----LLSGGQRQALSLLMATLHPPKI 169 (263)
T ss_pred ccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhh-----hccchHHHHHHHHHHhcCCCcE
Confidence 99999999998764322222222 23333344455554 66777777654 7999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEc
Q 007952 154 LFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 215 (583)
Q Consensus 154 llLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 215 (583)
|+|||-|++|||.++..+++.-.++.++ +.|.+|+||... +..++-+|.++|++|+||..-
T Consensus 170 LLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~-~Al~yG~RlImLh~G~IvlDv 231 (263)
T COG1101 170 LLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNME-DALDYGNRLIMLHSGKIVLDV 231 (263)
T ss_pred EEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHH-HHHhhCCeEEEEeCCeEEEEc
Confidence 9999999999999999999999998754 779999999965 567899999999999999754
No 340
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=1.3e-34 Score=323.53 Aligned_cols=183 Identities=31% Similarity=0.372 Sum_probs=158.4
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHHHHH
Q 007952 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLT 88 (583)
Q Consensus 9 iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~l~ 88 (583)
.|+++|+++++||+++|+||||||||||+|+|+|... +++|+|.++ ..++|++|+..+.+.+||+|++.
T Consensus 354 ~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~--p~~G~I~~~---------~~i~y~~Q~~~~~~~~tv~e~l~ 422 (590)
T PRK13409 354 SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLK--PDEGEVDPE---------LKISYKPQYIKPDYDGTVEDLLR 422 (590)
T ss_pred EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEEe---------eeEEEecccccCCCCCcHHHHHH
Confidence 5899999999999999999999999999999999753 578999886 25999999988888999999998
Q ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHH
Q 007952 89 YAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTA 168 (583)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~~~ 168 (583)
+.... ... ...++++++.+||.+..++ .+.+|||||||||+||++|+.+|++|+|||||+|||+.++
T Consensus 423 ~~~~~-----~~~---~~~~~~~L~~l~l~~~~~~-----~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~ 489 (590)
T PRK13409 423 SITDD-----LGS---SYYKSEIIKPLQLERLLDK-----NVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQR 489 (590)
T ss_pred HHhhh-----cCh---HHHHHHHHHHCCCHHHHhC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHH
Confidence 75321 111 2346789999999876665 4679999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcCh
Q 007952 169 LRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 217 (583)
Q Consensus 169 ~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 217 (583)
..+.+.|++++++ |+|||++|||+. .+..+||++++|+ |++...|..
T Consensus 490 ~~l~~~l~~l~~~~g~tviivsHD~~-~~~~~aDrvivl~-~~~~~~g~~ 537 (590)
T PRK13409 490 LAVAKAIRRIAEEREATALVVDHDIY-MIDYISDRLMVFE-GEPGKHGHA 537 (590)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEc-Ccceeeeec
Confidence 9999999999874 899999999965 5778899999996 588777763
No 341
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=1.7e-34 Score=322.57 Aligned_cols=192 Identities=27% Similarity=0.416 Sum_probs=157.8
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCC-CCCCCCCH
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDD-VLFPHLTV 83 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~-~~~~~lTv 83 (583)
+++.+|+|+|++|++||+++|+||||||||||+++|+|... +.+|+|.+++. ..+||++|+. .+++.+||
T Consensus 333 ~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~--p~~G~i~~~~~-------~~i~~v~q~~~~~~~~~tv 403 (552)
T TIGR03719 333 GDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQ--PDSGTIKIGET-------VKLAYVDQSRDALDPNKTV 403 (552)
T ss_pred CCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCeEEEECCc-------eEEEEEeCCccccCCCCcH
Confidence 34679999999999999999999999999999999999653 57899999542 2599999996 47888999
Q ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCC
Q 007952 84 KETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 162 (583)
Q Consensus 84 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsg 162 (583)
.|++.+..... ..... +.+++++++.+|+.+ ..++ .+..|||||||||+||++|+.+|++|+|||||+|
T Consensus 404 ~e~l~~~~~~~---~~~~~--~~~~~~~l~~~~l~~~~~~~-----~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~ 473 (552)
T TIGR03719 404 WEEISGGLDII---QLGKR--EVPSRAYVGRFNFKGSDQQK-----KVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTND 473 (552)
T ss_pred HHHHHhhcccc---ccCcc--hHHHHHHHHhCCCChhHhcC-----chhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Confidence 99998864221 11111 223567899999964 3444 4579999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcC-CeEE-EEcChhh
Q 007952 163 LDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK-GSLL-YFGKASE 219 (583)
Q Consensus 163 LD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~-G~iv-~~G~~~~ 219 (583)
||+.++..+.+.|+++. | |||++|||+. .+.++||++++|++ |++. +.|+.++
T Consensus 474 LD~~~~~~l~~~l~~~~--~-~viivsHd~~-~~~~~~d~i~~l~~~~~~~~~~g~~~~ 528 (552)
T TIGR03719 474 LDVETLRALEEALLEFA--G-CAVVISHDRW-FLDRIATHILAFEGDSHVEWFEGNYSE 528 (552)
T ss_pred CCHHHHHHHHHHHHHCC--C-eEEEEeCCHH-HHHHhCCEEEEEECCCeEEEeCCCHHH
Confidence 99999999999999873 4 8999999965 57788999999986 5776 5566544
No 342
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=5.4e-35 Score=340.39 Aligned_cols=207 Identities=27% Similarity=0.481 Sum_probs=190.9
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-----cccccEEEEccCCCCCCCCCH
Q 007952 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-----SLKSKIGFVTQDDVLFPHLTV 83 (583)
Q Consensus 9 iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-----~~~~~i~yv~Q~~~~~~~lTv 83 (583)
+++++|+.|++||+.|++|+|||||||++|+|+|.. ++++|+++++|+++.. +.++.+||+||+|.+++.+|.
T Consensus 580 Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~--~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~ 657 (885)
T KOG0059|consen 580 AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGET--KPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTG 657 (885)
T ss_pred hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCc--cCCcceEEEecCccccccchhhhhhhcccCCchhhhhhhccH
Confidence 899999999999999999999999999999999965 4689999999998753 256789999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCC
Q 007952 84 KETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGL 163 (583)
Q Consensus 84 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgL 163 (583)
+|++.+.++++ +++..+.++.++..++.+||.+.+++. ++.+|||+|||+++|.|++.+|++++|||||+|+
T Consensus 658 rEhL~~~arlr---G~~~~di~~~v~~ll~~~~L~~~~~~~-----~~~ySgG~kRkLs~aialig~p~vi~LDEPstGm 729 (885)
T KOG0059|consen 658 REHLEFYARLR---GLPRSDIGSAIEKLLRLVGLGPYANKQ-----VRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGL 729 (885)
T ss_pred HHHHHHHHHHc---CCChhHHHHHHHHHHHHcCChhhhccc-----hhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCC
Confidence 99999999887 456677778899999999999998875 4689999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHHHHHh
Q 007952 164 DSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSS 226 (583)
Q Consensus 164 D~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~ 226 (583)
||.+++.+.++++++.++|+.||.|||. .+|...+|||+.+|.+|++.-.|+++++...|..
T Consensus 730 DP~arr~lW~ii~~~~k~g~aiiLTSHs-MeE~EaLCtR~aImv~G~l~ciGs~q~LKsrfG~ 791 (885)
T KOG0059|consen 730 DPKARRHLWDIIARLRKNGKAIILTSHS-MEEAEALCTRTAIMVIGQLRCIGSPQELKSRYGS 791 (885)
T ss_pred CHHHHHHHHHHHHHHHhcCCEEEEEcCC-HHHHHHHhhhhheeecCeeEEecChHHHHhhcCC
Confidence 9999999999999999988899999999 4678899999999999999999999999988764
No 343
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.5e-34 Score=324.03 Aligned_cols=191 Identities=29% Similarity=0.462 Sum_probs=159.7
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCC--CCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDD--VLFPHLT 82 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~--~~~~~lT 82 (583)
+++.+|+|+|++|++|++++|+||||||||||||+|+|.. ++++|+|.+++. ..+||++|+. .+.+..|
T Consensus 323 ~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~--~p~~G~i~~~~~-------~~igy~~Q~~~~~l~~~~~ 393 (638)
T PRK10636 323 GDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGEL--APVSGEIGLAKG-------IKLGYFAQHQLEFLRADES 393 (638)
T ss_pred CCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCCeEEECCC-------EEEEEecCcchhhCCccch
Confidence 4567999999999999999999999999999999999965 367899999742 2699999974 3556678
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 161 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPts 161 (583)
+.+++.- .. .....+++.++++.+++.. ..++ .+..|||||||||+||++|+.+|++|+|||||+
T Consensus 394 ~~~~~~~---~~------~~~~~~~~~~~L~~~~l~~~~~~~-----~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~ 459 (638)
T PRK10636 394 PLQHLAR---LA------PQELEQKLRDYLGGFGFQGDKVTE-----ETRRFSGGEKARLVLALIVWQRPNLLLLDEPTN 459 (638)
T ss_pred HHHHHHH---hC------chhhHHHHHHHHHHcCCChhHhcC-----chhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 8877531 11 1123456889999999963 4554 357999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEE-EEcChhhHHH
Q 007952 162 GLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL-YFGKASEAMA 222 (583)
Q Consensus 162 gLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv-~~G~~~~~~~ 222 (583)
|||+.+...+.+.|+++ .| |||++|||+. .+.++||++++|++|+++ +.|+.++..+
T Consensus 460 ~LD~~~~~~l~~~L~~~--~g-tvi~vSHd~~-~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 517 (638)
T PRK10636 460 HLDLDMRQALTEALIDF--EG-ALVVVSHDRH-LLRSTTDDLYLVHDGKVEPFDGDLEDYQQ 517 (638)
T ss_pred CCCHHHHHHHHHHHHHc--CC-eEEEEeCCHH-HHHHhCCEEEEEECCEEEEcCCCHHHHHH
Confidence 99999999999999987 34 9999999964 577899999999999997 8899887643
No 344
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=3.2e-34 Score=272.94 Aligned_cols=147 Identities=27% Similarity=0.425 Sum_probs=129.0
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCH
Q 007952 4 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTV 83 (583)
Q Consensus 4 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv 83 (583)
.+++.+++++ +++++||+++|+||||||||||+|+|+|... +++|+|.++|.+ ++|++|+..
T Consensus 10 ~~~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~--------i~~~~q~~~------- 71 (177)
T cd03222 10 YGVFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLI--PNGDNDEWDGIT--------PVYKPQYID------- 71 (177)
T ss_pred ECCEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCC--CCCcEEEECCEE--------EEEEcccCC-------
Confidence 3567789984 9999999999999999999999999999653 678999999853 788888532
Q ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCC
Q 007952 84 KETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGL 163 (583)
Q Consensus 84 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgL 163 (583)
||||||||++||++|+.+|++++|||||+||
T Consensus 72 -------------------------------------------------LSgGq~qrv~laral~~~p~lllLDEPts~L 102 (177)
T cd03222 72 -------------------------------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYL 102 (177)
T ss_pred -------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccC
Confidence 8999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHCC-cEEEEEecCCChHHHhhcCeEEEEcCCeEEEE--cChh
Q 007952 164 DSTTALRIVQMLQDIAEAG-KTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF--GKAS 218 (583)
Q Consensus 164 D~~~~~~i~~~l~~l~~~g-~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~--G~~~ 218 (583)
|+.++..+.+.++++++++ .|||++||++. .+.+.||++++|+++-.++. |+|.
T Consensus 103 D~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~~~~~~~~~~~~~ 159 (177)
T cd03222 103 DIEQRLNAARAIRRLSEEGKKTALVVEHDLA-VLDYLSDRIHVFEGEPGVYGIASQPK 159 (177)
T ss_pred CHHHHHHHHHHHHHHHHcCCCEEEEEECCHH-HHHHhCCEEEEEcCCCccceeccCCc
Confidence 9999999999999998775 89999999964 46678999999998766654 5554
No 345
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=8.4e-34 Score=261.99 Aligned_cols=133 Identities=36% Similarity=0.588 Sum_probs=122.4
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHH
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 85 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e 85 (583)
++.+++|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+ +.++|++|
T Consensus 12 ~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~~~-------~~i~~~~~------------ 70 (144)
T cd03221 12 GKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELE--PDEGIVTWGST-------VKIGYFEQ------------ 70 (144)
T ss_pred CceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC--CCceEEEECCe-------EEEEEEcc------------
Confidence 4579999999999999999999999999999999999653 67999999984 46899998
Q ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCH
Q 007952 86 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS 165 (583)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~ 165 (583)
||+||+||++|||+|+.+|+++++||||+|||+
T Consensus 71 -----------------------------------------------lS~G~~~rv~laral~~~p~illlDEP~~~LD~ 103 (144)
T cd03221 71 -----------------------------------------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDL 103 (144)
T ss_pred -----------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCH
Confidence 899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCe
Q 007952 166 TTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 210 (583)
Q Consensus 166 ~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~ 210 (583)
.++..+.+.|+++ ++||++++|++. ++.+.||++++|++||
T Consensus 104 ~~~~~l~~~l~~~---~~til~~th~~~-~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 104 ESIEALEEALKEY---PGTVILVSHDRY-FLDQVATKIIELEDGK 144 (144)
T ss_pred HHHHHHHHHHHHc---CCEEEEEECCHH-HHHHhCCEEEEEeCCC
Confidence 9999999999987 479999999965 5678899999999986
No 346
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=6.4e-34 Score=347.38 Aligned_cols=192 Identities=26% Similarity=0.424 Sum_probs=159.0
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHH
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 85 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e 85 (583)
++++|+|+|+++++||.++|+||||||||||+++|.|... +.+|.+. ..++.++||+|++.+++. |++|
T Consensus 629 ~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~--~~~G~i~--------~~~~~Iayv~Q~p~Lf~g-TIre 697 (1495)
T PLN03232 629 SKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELS--HAETSSV--------VIRGSVAYVPQVSWIFNA-TVRE 697 (1495)
T ss_pred CCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCc--ccCCCEE--------EecCcEEEEcCccccccc-cHHH
Confidence 4679999999999999999999999999999999999653 4566552 346789999999999975 9999
Q ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeC
Q 007952 86 TLTYAALLRLPNTLTKQQKEKRAIDVINELGL-------ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 158 (583)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDE 158 (583)
||.|+. + .++ ++.+++++..+| .+-.+|.+|.+ ..+||||||||++||||+.++|+|++|||
T Consensus 698 NI~fg~----~--~~~----e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~-G~~LSGGQkQRIaLARAly~~~~IlLLDE 766 (1495)
T PLN03232 698 NILFGS----D--FES----ERYWRAIDVTALQHDLDLLPGRDLTEIGER-GVNISGGQKQRVSMARAVYSNSDIYIFDD 766 (1495)
T ss_pred HhhcCC----c--cCH----HHHHHHHHHhCCHHHHHhCCCCCCceecCC-CcccCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 999863 1 222 334455555444 34456888754 66899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHH-HHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 159 PTSGLDSTTALRIVQM-LQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 159 PtsgLD~~~~~~i~~~-l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
|||+||+.++.++++. ++.. .+++|+|++||+++ ..+.+|+|++|++|++++.|+.+++.+
T Consensus 767 ptSaLD~~t~~~I~~~~l~~~-l~~kT~IlvTH~~~--~l~~aD~Ii~L~~G~i~~~Gt~~eL~~ 828 (1495)
T PLN03232 767 PLSALDAHVAHQVFDSCMKDE-LKGKTRVLVTNQLH--FLPLMDRIILVSEGMIKEEGTFAELSK 828 (1495)
T ss_pred CccccCHHHHHHHHHHHhhhh-hcCCEEEEEECChh--hHHhCCEEEEEeCCEEEEecCHHHHHh
Confidence 9999999999999765 5543 35899999999975 357899999999999999999998764
No 347
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=1.3e-33 Score=319.77 Aligned_cols=193 Identities=26% Similarity=0.442 Sum_probs=158.9
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCC-CCCCCCCH
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDD-VLFPHLTV 83 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~-~~~~~lTv 83 (583)
+++++|+|+|++|++|++++|+||||||||||||+|+|.. ++++|+|.+ |.++ .+||++|+. .+++.+||
T Consensus 330 ~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~--~p~~G~i~~-~~~~------~i~y~~q~~~~l~~~~tv 400 (635)
T PRK11147 330 DGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQL--QADSGRIHC-GTKL------EVAYFDQHRAELDPEKTV 400 (635)
T ss_pred CCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC--CCCCcEEEE-CCCc------EEEEEeCcccccCCCCCH
Confidence 4567999999999999999999999999999999999965 367899998 4332 599999985 58899999
Q ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCC
Q 007952 84 KETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 162 (583)
Q Consensus 84 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsg 162 (583)
.|++.+.... . ... ....++.++++.+++. +..++ .++.|||||||||+||++|+.+|++|||||||+|
T Consensus 401 ~e~l~~~~~~-~--~~~--~~~~~~~~~l~~~~l~~~~~~~-----~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~ 470 (635)
T PRK11147 401 MDNLAEGKQE-V--MVN--GRPRHVLGYLQDFLFHPKRAMT-----PVKALSGGERNRLLLARLFLKPSNLLILDEPTND 470 (635)
T ss_pred HHHHHhhccc-c--ccc--chHHHHHHHHHhcCCCHHHHhC-----hhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCC
Confidence 9999875321 0 011 1234578889999986 34454 3579999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEc-CCeEE-EEcChhhH
Q 007952 163 LDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG-KGSLL-YFGKASEA 220 (583)
Q Consensus 163 LD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~-~G~iv-~~G~~~~~ 220 (583)
||+.+...+.+.|+++ +.|||++|||.. .+.++||++++++ +|++. |.|+.++-
T Consensus 471 LD~~~~~~l~~~l~~~---~~tvi~vSHd~~-~~~~~~d~i~~l~~~g~i~~~~g~y~~y 526 (635)
T PRK11147 471 LDVETLELLEELLDSY---QGTVLLVSHDRQ-FVDNTVTECWIFEGNGKIGRYVGGYHDA 526 (635)
T ss_pred CCHHHHHHHHHHHHhC---CCeEEEEECCHH-HHHHhcCEEEEEeCCCeEEEccCCHHHH
Confidence 9999999999999876 459999999964 5778999999997 79875 45665553
No 348
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=8.1e-34 Score=346.89 Aligned_cols=191 Identities=26% Similarity=0.436 Sum_probs=160.3
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcc-cEEEECCccCCccccccEEEEccCCCCCCCCCHH
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVG-GSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVK 84 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~-G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~ 84 (583)
++++|+|+|+++++||.++|+||||||||||+++|.|... +.+ |+|.+ ++.|+||+|++.+++. |++
T Consensus 629 ~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~--~~~GG~I~l---------~~~Iayv~Q~p~Lfng-TIr 696 (1622)
T PLN03130 629 ERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELP--PRSDASVVI---------RGTVAYVPQVSWIFNA-TVR 696 (1622)
T ss_pred CCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhc--cCCCceEEE---------cCeEEEEcCccccCCC-CHH
Confidence 4679999999999999999999999999999999999653 567 89974 4579999999999975 999
Q ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEe
Q 007952 85 ETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-------RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLD 157 (583)
Q Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLD 157 (583)
|||.|+.. .+ +++.+++++..+|. +-.+|.+|.+ ..+||||||||++||||+..+|+|++||
T Consensus 697 eNI~fg~~------~d----~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~-G~~LSGGQKQRIaLARAly~~~~IlLLD 765 (1622)
T PLN03130 697 DNILFGSP------FD----PERYERAIDVTALQHDLDLLPGGDLTEIGER-GVNISGGQKQRVSMARAVYSNSDVYIFD 765 (1622)
T ss_pred HHHhCCCc------cc----HHHHHHHHHHhCcHHHHHhCCCcccccccCC-CCCCCHHHHHHHHHHHHHhCCCCEEEEC
Confidence 99998631 12 33455566655553 3457788754 5689999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHH-HHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 158 EPTSGLDSTTALRIVQ-MLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 158 EPtsgLD~~~~~~i~~-~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
||||+||+.+++++++ .++.+. +|+|+|++||++. ..+.+|+|++|++|++++.|+.+++.+
T Consensus 766 EptSALD~~~~~~I~~~~l~~~l-~~kTvIlVTH~l~--~l~~aD~Ii~L~~G~i~e~Gt~~eL~~ 828 (1622)
T PLN03130 766 DPLSALDAHVGRQVFDKCIKDEL-RGKTRVLVTNQLH--FLSQVDRIILVHEGMIKEEGTYEELSN 828 (1622)
T ss_pred CCccccCHHHHHHHHHHHhhHHh-cCCEEEEEECCHh--HHHhCCEEEEEeCCEEEEeCCHHHHHh
Confidence 9999999999998875 566553 5899999999974 467899999999999999999998753
No 349
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-33 Score=318.06 Aligned_cols=198 Identities=27% Similarity=0.412 Sum_probs=154.9
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCH
Q 007952 4 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTV 83 (583)
Q Consensus 4 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv 83 (583)
.+++.+|+|+||+|++|+++||+||||||||||||+|+|... +++|+|.++|.. .++|++|+...+ ..|+
T Consensus 11 ~g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~--pd~G~I~~~~~~-------~i~~~~q~~~~~-~~~~ 80 (638)
T PRK10636 11 RGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEIS--ADGGSYTFPGNW-------QLAWVNQETPAL-PQPA 80 (638)
T ss_pred eCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEecCCC-------EEEEEecCCCCC-CCCH
Confidence 456789999999999999999999999999999999999653 679999998742 388998865333 2465
Q ss_pred HHHHHHHH--------H---------------cCC-CCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccChHHH
Q 007952 84 KETLTYAA--------L---------------LRL-PNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGER 138 (583)
Q Consensus 84 ~e~l~~~~--------~---------------~~~-~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~LSgGer 138 (583)
.+++.-.. . +.. .......+.+++++++++.+|+. +..+. .+..||||||
T Consensus 81 ~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~-----~~~~LSgGer 155 (638)
T PRK10636 81 LEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLER-----PVSDFSGGWR 155 (638)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcC-----chhhcCHHHH
Confidence 55442110 0 000 00000112345788999999996 34554 3568999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEE-EEcCh
Q 007952 139 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL-YFGKA 217 (583)
Q Consensus 139 qRv~ia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv-~~G~~ 217 (583)
|||+||++|+.+|++|||||||+|||+.+...+.+.|+++ +.|||++|||.. .+.+.||++++|++|+++ |.|+.
T Consensus 156 qRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~---~~tviivsHd~~-~l~~~~d~i~~L~~G~i~~~~g~~ 231 (638)
T PRK10636 156 MRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY---QGTLILISHDRD-FLDPIVDKIIHIEQQSLFEYTGNY 231 (638)
T ss_pred HHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC---CCeEEEEeCCHH-HHHHhcCEEEEEeCCEEEEecCCH
Confidence 9999999999999999999999999999999999999875 569999999964 577899999999999986 67776
Q ss_pred hhH
Q 007952 218 SEA 220 (583)
Q Consensus 218 ~~~ 220 (583)
+..
T Consensus 232 ~~~ 234 (638)
T PRK10636 232 SSF 234 (638)
T ss_pred HHH
Confidence 654
No 350
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=3.4e-33 Score=256.73 Aligned_cols=206 Identities=23% Similarity=0.480 Sum_probs=180.4
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc---c-ccccEEEEccCC--CCCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---S-LKSKIGFVTQDD--VLFP 79 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~---~-~~~~i~yv~Q~~--~~~~ 79 (583)
...+++.|||++++|+.+||+|.||||||||.|+|+|.. +|++|+|.+||+++.- . ..+.|-+++||+ .+.|
T Consensus 25 ~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi--~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NP 102 (267)
T COG4167 25 TVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMI--EPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNP 102 (267)
T ss_pred hhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhccc--CCCCceEEECCccccccchHhhhhheeeeecCCccccCh
Confidence 346789999999999999999999999999999999965 4689999999998742 2 236699999997 4788
Q ss_pred CCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeC
Q 007952 80 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 158 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDE 158 (583)
.+.+.+-|.... ++...++.+++++++.+.++.+||-. .++ -+++.||-||||||++||||+.+|+|++.||
T Consensus 103 Rl~iGqiLd~PL--~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan-----~~~~~la~~QKQRVaLARALIL~P~iIIaDe 175 (267)
T COG4167 103 RLRIGQILDFPL--RLNTDLEPEQRRKQIFETLRMVGLLPDHAN-----YYPHMLAPGQKQRVALARALILRPKIIIADE 175 (267)
T ss_pred hhhhhhHhcchh--hhcccCChHHHHHHHHHHHHHhccCccccc-----cchhhcCchhHHHHHHHHHHhcCCcEEEehh
Confidence 888888887765 44556788889999999999999864 333 3578999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 159 PTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 159 PtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
...+||...+.+++++.-+|.++ |.+-|.++.+.. .+..+.|+|++|++|++++.|++.+++
T Consensus 176 Al~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG-~iKHi~D~viVM~EG~vvE~G~t~~v~ 238 (267)
T COG4167 176 ALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIG-MIKHISDQVLVMHEGEVVERGSTADVL 238 (267)
T ss_pred hhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhh-HhhhhcccEEEEecCceeecCChhhhh
Confidence 99999999999999999999865 999999998865 588899999999999999999999875
No 351
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=1e-33 Score=321.30 Aligned_cols=186 Identities=21% Similarity=0.369 Sum_probs=151.1
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHH
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 85 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e 85 (583)
++.+|+|+|+++++||+++|+||||||||||+|+|+|.. ++.+|+|.+++ ++.++||+|++.+++. |++|
T Consensus 464 ~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~--~~~~G~i~~~~-------~~~i~~v~Q~~~l~~~-tv~e 533 (659)
T TIGR00954 464 GDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELW--PVYGGRLTKPA-------KGKLFYVPQRPYMTLG-TLRD 533 (659)
T ss_pred CCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCCeEeecC-------CCcEEEECCCCCCCCc-CHHH
Confidence 457999999999999999999999999999999999965 35789998864 4679999999998887 9999
Q ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCcccccccc----CccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 007952 86 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIG----GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 161 (583)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig----~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPts 161 (583)
|+.++....... .....+++++++++.+++.+..++..| ......||||||||++|||+|+++|++++|||||+
T Consensus 534 ni~~~~~~~~~~--~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts 611 (659)
T TIGR00954 534 QIIYPDSSEDMK--RRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTS 611 (659)
T ss_pred HHhcCCChhhhh--ccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 998753211000 001123457788999999765543221 11346899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcC
Q 007952 162 GLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 208 (583)
Q Consensus 162 gLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~ 208 (583)
|||+.++..+.+.+++ .|+|+|+++|+++. .+.||++++|++
T Consensus 612 ~LD~~~~~~l~~~l~~---~~~tvI~isH~~~~--~~~~d~il~l~~ 653 (659)
T TIGR00954 612 AVSVDVEGYMYRLCRE---FGITLFSVSHRKSL--WKYHEYLLYMDG 653 (659)
T ss_pred CCCHHHHHHHHHHHHH---cCCEEEEEeCchHH--HHhCCEEEEEeC
Confidence 9999999999998876 38999999999753 578999999963
No 352
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=7.9e-34 Score=253.23 Aligned_cols=180 Identities=32% Similarity=0.513 Sum_probs=157.0
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCC-CcccEEEECCccCCc--cccccEEEEccCCCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYSK--SLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~-~~~G~I~~~g~~~~~--~~~~~i~yv~Q~~~~~~~l 81 (583)
+++.+|-|+|++|.+||++-||||||||||||+..+.|-+... ..+|++++|++.++. ..+|++|..+||+.+||.+
T Consensus 13 ~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphl 92 (213)
T COG4136 13 PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHL 92 (213)
T ss_pred CCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeeccccccccc
Confidence 4567899999999999999999999999999999999976432 478999999998763 4578899999999999999
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 161 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPts 161 (583)
+|.|||.|+ +|.++..+.+++.++..+++.||....+. .+.+||||||-||++-|+|+..|+.++||||+|
T Consensus 93 sVg~Nl~fA----lp~~~KG~aRr~~a~aAL~~~gL~g~f~~-----dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS 163 (213)
T COG4136 93 SVGQNLLFA----LPATLKGNARRNAANAALERSGLDGAFHQ-----DPATLSGGQRARVALLRALLAQPKALLLDEPFS 163 (213)
T ss_pred ccccceEEe----cCcccccHHHHhhHHHHHHHhccchhhhc-----ChhhcCcchHHHHHHHHHHHhCcceeeeCCchh
Confidence 999999986 45555566777788999999999877664 478999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHH-HHHCCcEEEEEecCCC
Q 007952 162 GLDSTTALRIVQMLQD-IAEAGKTVVTTIHQPS 193 (583)
Q Consensus 162 gLD~~~~~~i~~~l~~-l~~~g~tii~~~H~~~ 193 (583)
.||..-+.++.+..-. +...|...+.+|||..
T Consensus 164 ~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~ 196 (213)
T COG4136 164 RLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQ 196 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEEecccc
Confidence 9999999999888755 4456999999999954
No 353
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-34 Score=295.26 Aligned_cols=206 Identities=35% Similarity=0.546 Sum_probs=173.5
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCC
Q 007952 4 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFP 79 (583)
Q Consensus 4 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~ 79 (583)
.+.+++|+++|+++++|+.+|++||||+||||++++|-... + ..+|.|.+||+++.. .+|+-||.||||..+|.
T Consensus 273 ~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFy-D-~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFN 350 (497)
T COG5265 273 DPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFY-D-VNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFN 350 (497)
T ss_pred cccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHh-C-CcCceEEEcchhHHHhHHHHHHHHhCcCcccceehh
Confidence 45689999999999999999999999999999999999644 3 568999999998753 57889999999999997
Q ss_pred CCCHHHHHHHHHHcCCCCCCCHHHHHHH-----HHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEE
Q 007952 80 HLTVKETLTYAALLRLPNTLTKQQKEKR-----AIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLL 154 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~il 154 (583)
+ |...|+.|+. | ..+.++..+. ..+.++. +.+-.++.+|.+ .-.|||||||||+|||+++.+|+||
T Consensus 351 D-ti~yni~ygr----~-~at~eev~aaa~~aqi~~fi~~--lP~gy~t~Vger-glklSggekqrvaiar~ilk~p~il 421 (497)
T COG5265 351 D-TIAYNIKYGR----P-DATAEEVGAAAEAAQIHDFIQS--LPEGYDTGVGER-GLKLSGGEKQRVAIARTILKNPPIL 421 (497)
T ss_pred h-hHHHHHhccC----c-cccHHHHHHHHHHhhhhHHHHh--Cchhhhcccchh-eeeccCchHHHHHHHHHHhcCCCEE
Confidence 6 9999998862 1 2344444332 2333443 466778888854 3459999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHHH
Q 007952 155 FLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAY 223 (583)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~ 223 (583)
+|||.||+||..+.+.|...|++.+ .|+|.+++-|..+. + --+|+|++|++|+|++.|+.++++..
T Consensus 422 ~~deatsaldt~te~~iq~~l~~~~-~~rttlviahrlst-i-~~adeiivl~~g~i~erg~h~~ll~~ 487 (497)
T COG5265 422 ILDEATSALDTHTEQAIQAALREVS-AGRTTLVIAHRLST-I-IDADEIIVLDNGRIVERGTHEELLAA 487 (497)
T ss_pred EEehhhhHhhhhHHHHHHHHHHHHh-CCCeEEEEeehhhh-c-cCCceEEEeeCCEEEecCcHHHHHHc
Confidence 9999999999999999999999987 58999999999765 4 35899999999999999999998763
No 354
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=4.8e-33 Score=316.31 Aligned_cols=192 Identities=21% Similarity=0.373 Sum_probs=154.9
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHH
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 85 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e 85 (583)
.+.+|+|+||+|++|++++|+||||||||||||+|+|... +.+|+|.+++. .++||++|+. .+.+++.+
T Consensus 521 ~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~--p~~G~I~~~~~-------~~igyv~Q~~--~~~l~~~~ 589 (718)
T PLN03073 521 GPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQ--PSSGTVFRSAK-------VRMAVFSQHH--VDGLDLSS 589 (718)
T ss_pred CCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCceEEECCc-------eeEEEEeccc--cccCCcch
Confidence 3469999999999999999999999999999999999653 67899998752 4699999985 34556666
Q ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCC
Q 007952 86 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLD 164 (583)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD 164 (583)
+.........+. .. ++++.++++.+|+.+ ..+. .+..|||||||||+||++|+.+|++|+|||||+|||
T Consensus 590 ~~~~~~~~~~~~-~~----~~~i~~~L~~~gl~~~~~~~-----~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD 659 (718)
T PLN03073 590 NPLLYMMRCFPG-VP----EQKLRAHLGSFGVTGNLALQ-----PMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLD 659 (718)
T ss_pred hHHHHHHHhcCC-CC----HHHHHHHHHHCCCChHHhcC-----CccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Confidence 643321111111 11 345788999999973 3443 467999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEE-EEcChhhHHH
Q 007952 165 STTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL-YFGKASEAMA 222 (583)
Q Consensus 165 ~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv-~~G~~~~~~~ 222 (583)
+.+...+++.|++. .| |||++|||+. .+.+.||++++|++|+++ +.|+.++..+
T Consensus 660 ~~s~~~l~~~L~~~--~g-tvIivSHd~~-~i~~~~drv~~l~~G~i~~~~g~~~~~~~ 714 (718)
T PLN03073 660 LDAVEALIQGLVLF--QG-GVLMVSHDEH-LISGSVDELWVVSEGKVTPFHGTFHDYKK 714 (718)
T ss_pred HHHHHHHHHHHHHc--CC-EEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCCHHHHHH
Confidence 99999998888765 34 9999999965 577889999999999998 7888776543
No 355
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.9e-33 Score=258.55 Aligned_cols=178 Identities=25% Similarity=0.430 Sum_probs=157.7
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCcc---ccccEEEEccCCCCCCC
Q 007952 4 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS---LKSKIGFVTQDDVLFPH 80 (583)
Q Consensus 4 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~---~~~~i~yv~Q~~~~~~~ 80 (583)
.++..++.++||++.+||++-|.||||||||||||+|+|... |.+|+|.++|.++... .++.+-|+-.++.+=+.
T Consensus 12 R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~--p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~e 89 (209)
T COG4133 12 RGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLR--PDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTE 89 (209)
T ss_pred cCcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccC--CCCCeEEecCCCCccchhhHHHHHHHhhccccccch
Confidence 467889999999999999999999999999999999999764 6799999999988643 44678899999999999
Q ss_pred CCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCC
Q 007952 81 LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPT 160 (583)
Q Consensus 81 lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPt 160 (583)
|||.|||.|....... ...+.+.+.++.+||....|.. +.+||-||||||+|||-+++.+++.+||||+
T Consensus 90 LTa~ENL~F~~~~~~~------~~~~~i~~Al~~vgL~g~~dlp-----~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~ 158 (209)
T COG4133 90 LTALENLHFWQRFHGS------GNAATIWEALAQVGLAGLEDLP-----VGQLSAGQQRRVALARLWLSPAPLWILDEPF 158 (209)
T ss_pred hhHHHHHHHHHHHhCC------CchhhHHHHHHHcCcccccccc-----hhhcchhHHHHHHHHHHHcCCCCceeecCcc
Confidence 9999999998765432 1234578899999999988875 4699999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCCh
Q 007952 161 SGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSS 194 (583)
Q Consensus 161 sgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~ 194 (583)
++||......+-..+..-+.+|-.||.+||||..
T Consensus 159 taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~ 192 (209)
T COG4133 159 TALDKEGVALLTALMAAHAAQGGIVLLTTHQPLP 192 (209)
T ss_pred cccCHHHHHHHHHHHHHHhcCCCEEEEecCCccC
Confidence 9999999999999999988889999999999865
No 356
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=1e-32 Score=312.59 Aligned_cols=197 Identities=26% Similarity=0.406 Sum_probs=153.6
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCH
Q 007952 4 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTV 83 (583)
Q Consensus 4 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv 83 (583)
.+++.+|+|+||++++|++++|+||||||||||||+|+|.. ++++|+|.++|.. .++|++|++......+|
T Consensus 13 ~~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~--~p~~G~I~~~~~~-------~~~~l~q~~~~~~~~~v 83 (635)
T PRK11147 13 FSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEV--LLDDGRIIYEQDL-------IVARLQQDPPRNVEGTV 83 (635)
T ss_pred eCCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCC--CCCCeEEEeCCCC-------EEEEeccCCCCCCCCCH
Confidence 34578999999999999999999999999999999999965 3678999998732 26777776543333466
Q ss_pred HHHHHHHH------------------------------HcC--CCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCc
Q 007952 84 KETLTYAA------------------------------LLR--LPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVR 131 (583)
Q Consensus 84 ~e~l~~~~------------------------------~~~--~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~ 131 (583)
.+++..+. .+. .. .....+.+++++++++.+|+.. ++ .+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~l~~lgl~~--~~-----~~~ 155 (635)
T PRK11147 84 YDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLD-HHNLWQLENRINEVLAQLGLDP--DA-----ALS 155 (635)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHH-hcCcccHHHHHHHHHHhCCCCC--CC-----chh
Confidence 65542110 000 00 0001123456889999999963 33 467
Q ss_pred ccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeE
Q 007952 132 GVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 211 (583)
Q Consensus 132 ~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~i 211 (583)
+|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++. .|||++|||+. .+.+.||+|+.|++|++
T Consensus 156 ~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~---~tvlivsHd~~-~l~~~~d~i~~L~~G~i 231 (635)
T PRK11147 156 SLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ---GSIIFISHDRS-FIRNMATRIVDLDRGKL 231 (635)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC---CEEEEEeCCHH-HHHHhcCeEEEEECCEE
Confidence 999999999999999999999999999999999999999999999873 59999999965 47788999999999999
Q ss_pred E-EEcChhhHH
Q 007952 212 L-YFGKASEAM 221 (583)
Q Consensus 212 v-~~G~~~~~~ 221 (583)
+ +.|+.++..
T Consensus 232 ~~~~g~~~~~~ 242 (635)
T PRK11147 232 VSYPGNYDQYL 242 (635)
T ss_pred EEecCCHHHHH
Confidence 7 568776543
No 357
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=5.1e-33 Score=310.67 Aligned_cols=181 Identities=29% Similarity=0.418 Sum_probs=151.9
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEE-----------ECCccCCcc------ccccEE
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSIT-----------YNDHPYSKS------LKSKIG 69 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~-----------~~g~~~~~~------~~~~i~ 69 (583)
+.+|++++ .+++||+++|+||||||||||+|+|+|.+. +++|+|. ++|+++... .+.+++
T Consensus 87 ~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~--p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~ 163 (590)
T PRK13409 87 GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELI--PNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVV 163 (590)
T ss_pred ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCcc--CCCccccCCCcHHHHHHHhCChHHHHHHHHHhccCccee
Confidence 36999999 999999999999999999999999999653 5789997 899876421 123466
Q ss_pred EEccCCCCCCC---CCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHH
Q 007952 70 FVTQDDVLFPH---LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNE 146 (583)
Q Consensus 70 yv~Q~~~~~~~---lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~ 146 (583)
+.+|.....|. .||+|++... +..++++++++.+||++..++. +.+||||||||++||++
T Consensus 164 ~~~q~~~~~p~~~~~tv~e~l~~~------------~~~~~~~~~l~~l~l~~~~~~~-----~~~LSgGe~qrv~ia~a 226 (590)
T PRK13409 164 HKPQYVDLIPKVFKGKVRELLKKV------------DERGKLDEVVERLGLENILDRD-----ISELSGGELQRVAIAAA 226 (590)
T ss_pred ecccchhhhhhhhcchHHHHHHhh------------hHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHHHHHHHH
Confidence 66665444333 3999998631 1235688999999998776654 56999999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCC
Q 007952 147 IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKG 209 (583)
Q Consensus 147 L~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G 209 (583)
|+.+|++|+|||||++||+.++..+.+.|+++++ |+|||+++|++. .+.+++|++++|+++
T Consensus 227 l~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~~-~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 227 LLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDLA-VLDYLADNVHIAYGE 287 (590)
T ss_pred HhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 9999999999999999999999999999999988 999999999965 577899999999763
No 358
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-32 Score=258.15 Aligned_cols=143 Identities=39% Similarity=0.746 Sum_probs=128.8
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~l 81 (583)
++.+++++|+++++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++.. ..++.++|++|
T Consensus 11 ~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~--~~~G~i~~~~~~~~~~~~~~~~~~i~~~~q-------- 80 (157)
T cd00267 11 GRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK--PTSGEILIDGKDIAKLPLEELRRRIGYVPQ-------- 80 (157)
T ss_pred CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEEcccCCHHHHHhceEEEee--------
Confidence 4579999999999999999999999999999999999753 578999999987643 23466888888
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 161 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPts 161 (583)
|||||+||++||++++.+|++++|||||+
T Consensus 81 ---------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~ilDEp~~ 109 (157)
T cd00267 81 ---------------------------------------------------LSGGQRQRVALARALLLNPDLLLLDEPTS 109 (157)
T ss_pred ---------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 89999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCe
Q 007952 162 GLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 210 (583)
Q Consensus 162 gLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~ 210 (583)
|||..++..+.+.+++++++++|+++++|++. ++...||+++++++|+
T Consensus 110 ~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 110 GLDPASRERLLELLRELAEEGRTVIIVTHDPE-LAELAADRVIVLKDGK 157 (157)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeCcC
Confidence 99999999999999999877899999999965 4667789999999875
No 359
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=2.3e-32 Score=333.36 Aligned_cols=192 Identities=27% Similarity=0.440 Sum_probs=156.4
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHHH
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKET 86 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~ 86 (583)
+++|+|+|+++++||+++|+|||||||||||++|+|... +.+|+|.++| .++||+|++.+++. ||+||
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~--~~~G~i~~~g---------~iayv~Q~~~l~~~-Ti~eN 506 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELE--PSEGKIKHSG---------RISFSPQTSWIMPG-TIKDN 506 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECC---------EEEEEeCCCccCCc-cHHHH
Confidence 569999999999999999999999999999999999763 6789999987 49999999999885 99999
Q ss_pred HHHHHHcCCCCCCCHHHHHHH-----HHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 007952 87 LTYAALLRLPNTLTKQQKEKR-----AIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 161 (583)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPts 161 (583)
+.|+.. ...+..++. .++.++.+ .+..+|.+|. ....||||||||++||||++.+|++++|||||+
T Consensus 507 I~~g~~------~~~~~~~~~~~~~~L~~~l~~l--~~g~~t~vg~-~g~~LSgGqkqRi~lARAl~~~~~illLDep~s 577 (1490)
T TIGR01271 507 IIFGLS------YDEYRYTSVIKACQLEEDIALF--PEKDKTVLGE-GGITLSGGQRARISLARAVYKDADLYLLDSPFT 577 (1490)
T ss_pred HHhccc------cchHHHHHHHHHHhHHHHHHhc--cccccccccC-cCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 998632 111111111 12222222 2223455654 467899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHH-HHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 162 GLDSTTALRIVQM-LQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 162 gLD~~~~~~i~~~-l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
|||+.++.++++. ++++. +|+|+|++||++.. + +.||+|++|++|+++..|+++++.+
T Consensus 578 aLD~~~~~~i~~~~l~~~~-~~~tvilvtH~~~~-~-~~ad~ii~l~~g~i~~~g~~~~l~~ 636 (1490)
T TIGR01271 578 HLDVVTEKEIFESCLCKLM-SNKTRILVTSKLEH-L-KKADKILLLHEGVCYFYGTFSELQA 636 (1490)
T ss_pred cCCHHHHHHHHHHHHHHHh-cCCeEEEEeCChHH-H-HhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999984 66665 48999999999754 4 5699999999999999999988753
No 360
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=1.4e-32 Score=336.05 Aligned_cols=195 Identities=23% Similarity=0.389 Sum_probs=157.7
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHHH
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKET 86 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~ 86 (583)
+++|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++| .++||+|++.+++ .||+||
T Consensus 651 ~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~--~~~G~i~~~g---------~i~yv~Q~~~l~~-~Ti~eN 718 (1522)
T TIGR00957 651 PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD--KVEGHVHMKG---------SVAYVPQQAWIQN-DSLREN 718 (1522)
T ss_pred CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc--cCCcEEEECC---------EEEEEcCCccccC-CcHHHH
Confidence 579999999999999999999999999999999999653 5789999987 4999999998875 699999
Q ss_pred HHHHHHcCCCCCCCHHHHHHHHH--HHHHHcCC-CccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCC
Q 007952 87 LTYAALLRLPNTLTKQQKEKRAI--DVINELGL-ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGL 163 (583)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~~~v~--~~l~~lgL-~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgL 163 (583)
+.|+.. .+.++.++.++ ++.+.++. .+-.+|.+|. ...+||||||||++||||+..+|++++||||||+|
T Consensus 719 I~~g~~------~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~-~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saL 791 (1522)
T TIGR00957 719 ILFGKA------LNEKYYQQVLEACALLPDLEILPSGDRTEIGE-KGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAV 791 (1522)
T ss_pred hhcCCc------cCHHHHHHHHHHhCCHHHHHhcCCCCCceecC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCcccc
Confidence 998521 12222222111 11233332 2233566654 46789999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHH--HCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 164 DSTTALRIVQMLQDIA--EAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 164 D~~~~~~i~~~l~~l~--~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
|+.++..+++.+.+.. .+|+|+|++||++.. .+.+|+|++|++|++++.|+++++.+
T Consensus 792 D~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~--l~~~D~ii~l~~G~i~~~g~~~~l~~ 850 (1522)
T TIGR00957 792 DAHVGKHIFEHVIGPEGVLKNKTRILVTHGISY--LPQVDVIIVMSGGKISEMGSYQELLQ 850 (1522)
T ss_pred CHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhh--hhhCCEEEEecCCeEEeeCCHHHHHh
Confidence 9999999999997542 358999999999753 45699999999999999999988754
No 361
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=3.9e-32 Score=331.69 Aligned_cols=192 Identities=28% Similarity=0.409 Sum_probs=153.1
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHH
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 85 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e 85 (583)
++.+|+|+|+++++||+++|+|||||||||||++|+|... +.+|+|.++ +.++||+|++.+++ .||+|
T Consensus 672 ~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~--~~~G~i~~~---------~~i~yv~Q~~~l~~-~Tv~e 739 (1560)
T PTZ00243 672 PKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFE--ISEGRVWAE---------RSIAYVPQQAWIMN-ATVRG 739 (1560)
T ss_pred CceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEEC---------CeEEEEeCCCccCC-CcHHH
Confidence 4679999999999999999999999999999999999653 578999863 46999999998875 69999
Q ss_pred HHHHHHHcCCCCCCCHHHHH-----HHHHHHHHHc--CCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeC
Q 007952 86 TLTYAALLRLPNTLTKQQKE-----KRAIDVINEL--GLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 158 (583)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~-----~~v~~~l~~l--gL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDE 158 (583)
|+.|... ...+..+ ..+++.++.+ |+ ++.+| +...+||||||||++|||||+.+|++++|||
T Consensus 740 nI~~~~~------~~~~~~~~~~~~~~l~~~l~~l~~g~----~t~i~-~~g~~LSGGQkqRvaLARAl~~~p~illLDE 808 (1560)
T PTZ00243 740 NILFFDE------EDAARLADAVRVSQLEADLAQLGGGL----ETEIG-EKGVNLSGGQKARVSLARAVYANRDVYLLDD 808 (1560)
T ss_pred HHHcCCh------hhHHHHHHHHHHhhhHHHHHHhhccc----hHHhc-CCCCCCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 9988421 1111111 1123334444 33 33444 3467899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 159 PTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 159 PtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
||++||+.++..+++.+.....+|+|+|++||++.. .+.+|+|++|++|++++.|+.++..+
T Consensus 809 P~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~--~~~ad~ii~l~~G~i~~~G~~~~l~~ 870 (1560)
T PTZ00243 809 PLSALDAHVGERVVEECFLGALAGKTRVLATHQVHV--VPRADYVVALGDGRVEFSGSSADFMR 870 (1560)
T ss_pred ccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHH--HHhCCEEEEEECCEEEEecCHHHHHh
Confidence 999999999999987543223358999999999753 46799999999999999999988653
No 362
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.98 E-value=5e-32 Score=247.24 Aligned_cols=207 Identities=30% Similarity=0.486 Sum_probs=162.8
Q ss_pred CccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCc---cCC-----c-----cccccEE
Q 007952 3 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH---PYS-----K-----SLKSKIG 69 (583)
Q Consensus 3 ~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~---~~~-----~-----~~~~~i~ 69 (583)
.++...-.+||||++.|||+++|+|+|||||||||++|++++. |+.|+|.|.-. +.. + -.|..-|
T Consensus 15 ~Yg~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~--p~~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG 92 (258)
T COG4107 15 LYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLT--PDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWG 92 (258)
T ss_pred hhCCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccC--CCCCeEEEEcCCCCchhHhhhchHHHHHHhhhccc
Confidence 3456677899999999999999999999999999999999875 67899998653 221 1 1345579
Q ss_pred EEccCCC--CCCCC----CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHH
Q 007952 70 FVTQDDV--LFPHL----TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 143 (583)
Q Consensus 70 yv~Q~~~--~~~~l----Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~i 143 (583)
+|.|++. +-... .+.|-++-.. .| ......+.+.++++++.++..+ + +..++..|||++||+.|
T Consensus 93 ~VhQnP~DGLRm~VSAG~NiGERlma~G-~R-----HYG~iR~~a~~WL~~VEI~~~R---i-DD~PrtFSGGMqQRLQi 162 (258)
T COG4107 93 FVHQNPRDGLRMQVSAGGNIGERLMAIG-AR-----HYGNIRAEAQDWLEEVEIDLDR---I-DDLPRTFSGGMQQRLQI 162 (258)
T ss_pred eeecCccccceeeeccCCccchhHHhhh-hh-----hhhhHHHHHHHHHHhcccCccc---c-cCcccccchHHHHHHHH
Confidence 9999863 32222 3444443211 11 1234556678899998886422 2 34689999999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 144 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 144 a~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
||.|++.|++.|+||||-|||...+..++++++.+..+ |.+++++|||.. .+--++|+.++|++|++++.|-.+.+++
T Consensus 163 ARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~-VarLla~rlmvmk~g~vve~GLTDrvLD 241 (258)
T COG4107 163 ARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VARLLADRLMVMKQGQVVESGLTDRVLD 241 (258)
T ss_pred HHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhH-HHHHhhhcceeecCCCEecccccccccc
Confidence 99999999999999999999999999999999999865 999999999964 2444689999999999999999888753
No 363
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=5.2e-31 Score=261.60 Aligned_cols=192 Identities=23% Similarity=0.369 Sum_probs=137.1
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHH-HHHhCCCCCCCcccEEEEC------------Cc-cCC-cccc-cc
Q 007952 4 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLL-NLLSGRLMEPTVGGSITYN------------DH-PYS-KSLK-SK 67 (583)
Q Consensus 4 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl-~~l~g~~~~~~~~G~I~~~------------g~-~~~-~~~~-~~ 67 (583)
..+..+|+|+|+++++||+++|+||||||||||+ ..+.. .|++.+. .. ... ...+ ..
T Consensus 5 ~~~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~-------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (226)
T cd03270 5 GAREHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYA-------EGQRRYVESLSAYARQFLGQMDKPDVDSIEGLS 77 (226)
T ss_pred cchhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHH-------HHHHHHhhcccchhhhhhcccCccccccccCCC
Confidence 3456799999999999999999999999999996 44431 1221110 00 000 0111 22
Q ss_pred EEEEccCCC--CCCCCCHH---HHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCcccChHHHHHH
Q 007952 68 IGFVTQDDV--LFPHLTVK---ETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGERKRV 141 (583)
Q Consensus 68 i~yv~Q~~~--~~~~lTv~---e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~LSgGerqRv 141 (583)
.++..|++. ..|..+|. |...+...+. ..+...++ .+.++.++|.+ ..+. .+.+||||||||+
T Consensus 78 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~~~-~~~l~~~~l~~~~~~~-----~~~~LSgG~~qrv 146 (226)
T cd03270 78 PAIAIDQKTTSRNPRSTVGTVTEIYDYLRLLF-----ARVGIRER-LGFLVDVGLGYLTLSR-----SAPTLSGGEAQRI 146 (226)
T ss_pred ceEEecCCCCCCCCCccHHHHHHHHHHHHHHh-----hhhhHHHH-HHHHHHCCCCcccccC-----ccCcCCHHHHHHH
Confidence 344444432 24444554 3222221111 11222233 56899999975 3443 4679999999999
Q ss_pred HHHHHHHhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEE------cCCeEEE
Q 007952 142 CIGNEIIINP--SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL------GKGSLLY 213 (583)
Q Consensus 142 ~ia~~L~~~p--~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L------~~G~iv~ 213 (583)
+||++|+.+| ++++|||||+|||+.++..+.+.|++++++|.|||++||++. ++ +.||++++| ++|++++
T Consensus 147 ~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~-~~-~~~d~i~~l~~~~~~~~G~iv~ 224 (226)
T cd03270 147 RLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDED-TI-RAADHVIDIGPGAGVHGGEIVA 224 (226)
T ss_pred HHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHH-HH-HhCCEEEEeCCCccccCCEEEe
Confidence 9999999998 599999999999999999999999999888999999999975 34 689999999 9999998
Q ss_pred Ec
Q 007952 214 FG 215 (583)
Q Consensus 214 ~G 215 (583)
+|
T Consensus 225 ~g 226 (226)
T cd03270 225 QG 226 (226)
T ss_pred cC
Confidence 86
No 364
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.97 E-value=1.9e-31 Score=291.45 Aligned_cols=197 Identities=31% Similarity=0.471 Sum_probs=160.4
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCH
Q 007952 4 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTV 83 (583)
Q Consensus 4 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv 83 (583)
.+.+.+|+|+|+++.+|+.+||+|+||||||||||+|+|... +++|+|...+. .+++|++|+....+..||
T Consensus 13 ~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~--~~~G~i~~~~~-------~~v~~l~Q~~~~~~~~tv 83 (530)
T COG0488 13 YGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELE--PDSGEVTRPKG-------LRVGYLSQEPPLDPEKTV 83 (530)
T ss_pred eCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCc--CCCCeEeecCC-------ceEEEeCCCCCcCCCccH
Confidence 467899999999999999999999999999999999999763 67899976532 359999999999999999
Q ss_pred HHHHHHHHHc-------------CCCCC--------------CCHHHHHHHHHHHHHHcCCCccccccccCccCcccChH
Q 007952 84 KETLTYAALL-------------RLPNT--------------LTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 136 (583)
Q Consensus 84 ~e~l~~~~~~-------------~~~~~--------------~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgG 136 (583)
.+.+.-+..- .++.. ...-+.+.++..++..+|+.+. ++. +.+||||
T Consensus 84 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~-----~~~LSGG 157 (530)
T COG0488 84 LDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRP-----VSSLSGG 157 (530)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCc-----hhhcCHH
Confidence 9988754310 00000 0001123567788888888875 543 5699999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeE-EEEc
Q 007952 137 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL-LYFG 215 (583)
Q Consensus 137 erqRv~ia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~i-v~~G 215 (583)
||.||++|++|+.+|++|+|||||++||..+..-+-+.|++. .| |+|++||| ..-+-+.|++|+-++.|++ .|.|
T Consensus 158 ~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~--~g-tviiVSHD-R~FLd~V~t~I~~ld~g~l~~y~G 233 (530)
T COG0488 158 WRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY--PG-TVIVVSHD-RYFLDNVATHILELDRGKLTPYKG 233 (530)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC--CC-cEEEEeCC-HHHHHHHhhheEEecCCceeEecC
Confidence 999999999999999999999999999999999999999864 46 99999999 5667789999999999976 4667
Q ss_pred Chhh
Q 007952 216 KASE 219 (583)
Q Consensus 216 ~~~~ 219 (583)
..+.
T Consensus 234 ny~~ 237 (530)
T COG0488 234 NYSS 237 (530)
T ss_pred CHHH
Confidence 6554
No 365
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=1.5e-30 Score=261.80 Aligned_cols=196 Identities=26% Similarity=0.400 Sum_probs=154.1
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHh--------CCCCC-C----------CcccEEEECCccCCccccc
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLS--------GRLME-P----------TVGGSITYNDHPYSKSLKS 66 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~--------g~~~~-~----------~~~G~I~~~g~~~~~~~~~ 66 (583)
...-|+|+|.+|+.|++++|.|+||||||||++.+. +.... + ...--|.++..|+.+..|.
T Consensus 7 ~~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs 86 (261)
T cd03271 7 RENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRS 86 (261)
T ss_pred chhcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCC
Confidence 456799999999999999999999999999998552 11000 0 0112467777776421110
Q ss_pred ------------------------------cEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcC
Q 007952 67 ------------------------------KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG 116 (583)
Q Consensus 67 ------------------------------~i~yv~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg 116 (583)
.+.|..++...+..+||.|++.|....+ ..+++.++++.+|
T Consensus 87 ~~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~---------~~~~~~~~L~~vg 157 (261)
T cd03271 87 NPATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIP---------KIARKLQTLCDVG 157 (261)
T ss_pred cHHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhh---------hHHHHHHHHHHcC
Confidence 1456666666677899999999875431 1245678999999
Q ss_pred CCc-cccccccCccCcccChHHHHHHHHHHHHHhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCC
Q 007952 117 LER-CQDTMIGGSFVRGVSGGERKRVCIGNEIIIN---PSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQP 192 (583)
Q Consensus 117 L~~-~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~---p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~ 192 (583)
|.+ ..+. .+.+||||||||+.||++|+.+ |++++|||||+|||+.....+.+.|++++++|.|||+++|++
T Consensus 158 L~~l~l~~-----~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~ 232 (261)
T cd03271 158 LGYIKLGQ-----PATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNL 232 (261)
T ss_pred CchhhhcC-----ccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 976 2343 4679999999999999999996 799999999999999999999999999998899999999997
Q ss_pred ChHHHhhcCeEEEE------cCCeEEEEcCh
Q 007952 193 SSRLFHKFDKLILL------GKGSLLYFGKA 217 (583)
Q Consensus 193 ~~~i~~~~D~v~~L------~~G~iv~~G~~ 217 (583)
.. + +.+|+++.| ++|++++.|++
T Consensus 233 ~~-i-~~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 233 DV-I-KCADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred HH-H-HhCCEEEEecCCcCCCCCEEEEeCCC
Confidence 53 4 679999999 89999999974
No 366
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.97 E-value=7.5e-31 Score=306.78 Aligned_cols=192 Identities=27% Similarity=0.441 Sum_probs=163.4
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHH
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 85 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e 85 (583)
..+.|+|||++|++|+++||+||-|||||+||.+|.|.+. ..+|+|.++|. ++||+|++-++.. ||||
T Consensus 533 ~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~--~~sG~v~v~gs---------iaYv~Q~pWI~ng-Tvre 600 (1381)
T KOG0054|consen 533 PEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMP--KLSGSVAVNGS---------VAYVPQQPWIQNG-TVRE 600 (1381)
T ss_pred CcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcc--cccceEEEcCe---------EEEeccccHhhCC-cHHH
Confidence 4458999999999999999999999999999999999774 57899999875 9999999998875 9999
Q ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeC
Q 007952 86 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-------RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 158 (583)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDE 158 (583)
|+.|+..+ .+++.+++++...|+ +.-.|.+| +..-+||||||||+++|||+-+|.+|++||.
T Consensus 601 NILFG~~~----------d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIG-ErGinLSGGQKqRIsLARAVY~~adIYLLDD 669 (1381)
T KOG0054|consen 601 NILFGSPY----------DEERYDKVIKACALKKDLEILPFGDLTEIG-ERGINLSGGQKQRISLARAVYQDADIYLLDD 669 (1381)
T ss_pred hhhcCccc----------cHHHHHHHHHHccCHhHHhhcCCCCcceec-CCccCCcHhHHHHHHHHHHHhccCCEEEEcC
Confidence 99997422 234555666655554 33456676 4567899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 159 PTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 159 PtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
|.|++|++..+++.+..-+-.-++||+|.+|||. +..+.+|+|++|++|+|+..|+.+|+.+
T Consensus 670 plSAVDahvg~~if~~ci~~~L~~KT~ILVTHql--~~L~~ad~Iivl~~G~I~~~Gty~el~~ 731 (1381)
T KOG0054|consen 670 PLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQL--QFLPHADQIIVLKDGKIVESGTYEELLK 731 (1381)
T ss_pred cchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCch--hhhhhCCEEEEecCCeEecccCHHHHHh
Confidence 9999999999999876665445689999999985 3578899999999999999999999873
No 367
>PLN03073 ABC transporter F family; Provisional
Probab=99.97 E-value=3.6e-31 Score=300.98 Aligned_cols=202 Identities=24% Similarity=0.314 Sum_probs=144.1
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC-CCcccEEEECCccC-----Cc-------------ccc
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-PTVGGSITYNDHPY-----SK-------------SLK 65 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~-~~~~G~I~~~g~~~-----~~-------------~~~ 65 (583)
+++.+|+|+|++|++|+.+||+||||||||||||+|+|+... .+.+|+|.+.++.. +. ..+
T Consensus 188 ~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~v~~~~~~~~~~~~ 267 (718)
T PLN03073 188 GGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQCVLNTDIERTQLLE 267 (718)
T ss_pred CCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHHHHHhhHHHHHHHH
Confidence 456799999999999999999999999999999999996421 24567776543321 10 012
Q ss_pred ccEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCCHH-------------------HHHHHHHHHHHHcCCC-ccccccc
Q 007952 66 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQ-------------------QKEKRAIDVINELGLE-RCQDTMI 125 (583)
Q Consensus 66 ~~i~yv~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~-------------------~~~~~v~~~l~~lgL~-~~~~~~i 125 (583)
+.++|++|++.+... ++.++...... ...+.+ ..++++.++++.+|+. +..++
T Consensus 268 ~~~~~~~q~~~l~~~-~~~~~~~~~~~----~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~~~~~~~-- 340 (718)
T PLN03073 268 EEAQLVAQQRELEFE-TETGKGKGANK----DGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTPEMQVK-- 340 (718)
T ss_pred HHHHHHHHHHHhhhc-ccccccccccc----cccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCChHHHhC--
Confidence 224556654332111 11111100000 001111 2344566777778875 23333
Q ss_pred cCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEE
Q 007952 126 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLIL 205 (583)
Q Consensus 126 g~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~ 205 (583)
.+.+|||||||||+||++|+.+|++|+|||||++||+.+...+.+.|+++ +.|||++||+.. .+.+.||++++
T Consensus 341 ---~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~~tviivsHd~~-~l~~~~d~i~~ 413 (718)
T PLN03073 341 ---ATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW---PKTFIVVSHARE-FLNTVVTDILH 413 (718)
T ss_pred ---chhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc---CCEEEEEECCHH-HHHHhCCEEEE
Confidence 45799999999999999999999999999999999999999999999886 679999999954 57788999999
Q ss_pred EcCCeEE-EEcChhhH
Q 007952 206 LGKGSLL-YFGKASEA 220 (583)
Q Consensus 206 L~~G~iv-~~G~~~~~ 220 (583)
|++|+++ |.|+.++.
T Consensus 414 l~~g~i~~~~g~~~~~ 429 (718)
T PLN03073 414 LHGQKLVTYKGDYDTF 429 (718)
T ss_pred EECCEEEEeCCCHHHH
Confidence 9999996 77876654
No 368
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.97 E-value=3.9e-31 Score=241.50 Aligned_cols=133 Identities=44% Similarity=0.761 Sum_probs=118.2
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCCCHHH
Q 007952 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLTVKE 85 (583)
Q Consensus 10 L~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~lTv~e 85 (583)
|+|+|+++++||+++|+|+||||||||+++|+|... +.+|+|.++|.++.. ..++.++|++|++.+++.+||+|
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~--~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~ 78 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLP--PDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRE 78 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSH--ESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccc--cccccccccccccccccccccccccccccccccccccccccc
Confidence 799999999999999999999999999999999653 578999999998864 35678999999999999999999
Q ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 007952 86 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 161 (583)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPts 161 (583)
+ ..+++++++++.+++.+..++.++. ...+||||||||++||++|+.+|++++|||||+
T Consensus 79 ~----------------~~~~~~~~~l~~l~~~~~~~~~~~~-~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 79 N----------------ESDERIEEVLKKLGLEDLLDRKIGQ-RASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp H----------------HHHHHHHHHHHHTTHGGGTGSBGTS-CGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred c----------------ccccccccccccccccccccccccc-ccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 8 2345688999999998877777653 348999999999999999999999999999996
No 369
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=6.1e-31 Score=239.35 Aligned_cols=192 Identities=28% Similarity=0.425 Sum_probs=160.7
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCcc--CC------c----cccccEEEEccC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP--YS------K----SLKSKIGFVTQD 74 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~--~~------~----~~~~~i~yv~Q~ 74 (583)
-++++|+||+++.||++++=||||||||||||+|-|.. .+++|+|++.-.. ++ . -.++.||||.|-
T Consensus 24 LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY--~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQF 101 (235)
T COG4778 24 LPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANY--LPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQF 101 (235)
T ss_pred eeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhcc--CCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHH
Confidence 47899999999999999999999999999999999965 3689999985432 11 1 135669999999
Q ss_pred CCCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEE
Q 007952 75 DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLL 154 (583)
Q Consensus 75 ~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~il 154 (583)
-...|..+..|-+.-.+.- ...+.+....++.+++.++++.+..-.+ .+.+.||||+|||.|||.++.|-+||
T Consensus 102 LRviPRV~aLdVvaePll~---~gv~~~~a~~~a~~Ll~rLnlperLW~L----aPaTFSGGEqQRVNIaRgfivd~pIL 174 (235)
T COG4778 102 LRVIPRVSALDVVAEPLLA---RGVPREVARAKAADLLTRLNLPERLWSL----APATFSGGEQQRVNIARGFIVDYPIL 174 (235)
T ss_pred HHhccCcchHHHHHhHHHH---cCCCHHHHHHHHHHHHHHcCCCHHHhcC----CCcccCCchheehhhhhhhhccCceE
Confidence 8888888777766554432 3467778888899999999998765543 47899999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcC
Q 007952 155 FLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 208 (583)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~ 208 (583)
+|||||+.||..++.-++++|++-+.+|..+|=+-|| .+.-...+||++-+..
T Consensus 175 LLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHD-eevre~vadR~~~~~~ 227 (235)
T COG4778 175 LLDEPTASLDATNRAVVVELIREAKARGAALVGIFHD-EEVREAVADRLLDVSA 227 (235)
T ss_pred EecCCcccccccchHHHHHHHHHHHhcCceEEEeecc-HHHHHHHhhheeeccc
Confidence 9999999999999999999999988889999999999 3333457999988754
No 370
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.97 E-value=2.2e-30 Score=302.96 Aligned_cols=200 Identities=25% Similarity=0.426 Sum_probs=166.9
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~l 81 (583)
...+|||||++|+|||.+||+|+.|||||||+++|-+.. + +.+|+|.+||.++.+ .+|++++.+||||.+|..
T Consensus 1152 lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~-e-~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsG- 1228 (1381)
T KOG0054|consen 1152 LPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLV-E-PAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSG- 1228 (1381)
T ss_pred CcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhc-C-ccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecC-
Confidence 457999999999999999999999999999999999754 3 478999999999874 689999999999999987
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCccCcccChHHHHHHHHHHHHHhCCCEE
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-------CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLL 154 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~il 154 (583)
|||+||.=. ...++ +.+.+.|+..+|.+ ..|+.+. +...++|-||||.+++||||+++++||
T Consensus 1229 TvR~NLDPf------~e~sD----~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~-egG~N~SvGQRQLlCLARALLr~skIL 1297 (1381)
T KOG0054|consen 1229 TVRFNLDPF------DEYSD----DEIWEALERCQLKDVVSSLPGGLDSEVS-EGGENFSVGQRQLLCLARALLRKSKIL 1297 (1381)
T ss_pred ccccccCcc------cccCH----HHHHHHHHHhChHHHHhhCCcCCCceec-CCCccCChHHHHHHHHHHHHhccCCEE
Confidence 999998511 11233 33444555544432 2344442 335789999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 155 FLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
+|||.|++.|+.+-..|.+.||+-= +++|||.+-|+.+. +.+ +|||++|++|+++++|+|.++++
T Consensus 1298 vLDEATAsVD~~TD~lIQ~tIR~~F-~dcTVltIAHRl~T-Vmd-~DrVlVld~G~v~EfdsP~~Ll~ 1362 (1381)
T KOG0054|consen 1298 VLDEATASVDPETDALIQKTIREEF-KDCTVLTIAHRLNT-VMD-SDRVLVLDAGRVVEFDSPAELLS 1362 (1381)
T ss_pred EEecccccCChHHHHHHHHHHHHHh-cCCeEEEEeeccch-hhh-cCeEEEeeCCeEeecCChHHHHh
Confidence 9999999999999999999999853 37999999999875 544 89999999999999999999875
No 371
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.96 E-value=7.8e-29 Score=264.73 Aligned_cols=203 Identities=24% Similarity=0.446 Sum_probs=172.4
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-----cccccEEEEccC---CCCCCC
Q 007952 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-----SLKSKIGFVTQD---DVLFPH 80 (583)
Q Consensus 9 iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-----~~~~~i~yv~Q~---~~~~~~ 80 (583)
.++|+||++++||+++|-|-=|||+|-|+++|.|.. +..+|+|.+||+++.. ..+..++|||.| +.++..
T Consensus 274 ~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~--~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~ 351 (500)
T COG1129 274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGAR--PASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLD 351 (500)
T ss_pred ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCC--cCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCC
Confidence 478999999999999999999999999999999943 4568999999998742 346689999998 568999
Q ss_pred CCHHHHHHHHHHcCCCC--CCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeC
Q 007952 81 LTVKETLTYAALLRLPN--TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 158 (583)
Q Consensus 81 lTv~e~l~~~~~~~~~~--~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDE 158 (583)
++|+||+.++...+... -++....++.+++..+.+++....- +..+..||||.+|||.||+.|..+|++|+|||
T Consensus 352 ~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~----~~~v~~LSGGNQQKVvlarwL~~~p~vLilDE 427 (500)
T COG1129 352 MSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSP----EQPIGTLSGGNQQKVVLARWLATDPKVLILDE 427 (500)
T ss_pred CcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCc----cchhhcCCchhhhhHHHHHHHhcCCCEEEECC
Confidence 99999999883322221 2455666677899999998863211 23567999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChh
Q 007952 159 PTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 218 (583)
Q Consensus 159 PtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 218 (583)
||.|.|..+..+|.+++++++++|++||++|.+. +|+..+||||++|++|+++..=+.+
T Consensus 428 PTRGIDVGAK~eIy~li~~lA~~G~ail~iSSEl-pEll~~~DRIlVm~~Gri~~e~~~~ 486 (500)
T COG1129 428 PTRGIDVGAKAEIYRLIRELAAEGKAILMISSEL-PELLGLSDRILVMREGRIVGELDRE 486 (500)
T ss_pred CCcCcccchHHHHHHHHHHHHHCCCEEEEEeCCh-HHHHhhCCEEEEEECCEEEEEeccc
Confidence 9999999999999999999999999999999995 5799999999999999998754443
No 372
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.96 E-value=2.4e-30 Score=236.45 Aligned_cols=197 Identities=28% Similarity=0.466 Sum_probs=168.4
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCCCH
Q 007952 8 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLTV 83 (583)
Q Consensus 8 ~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~lTv 83 (583)
+-|-.+|+++..||++-++|||||||||||-.++|.. +-+|+|.++|+++.. ++.+.-+|..|+..-...|.|
T Consensus 13 tRL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~---~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV 89 (248)
T COG4138 13 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT---SGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPV 89 (248)
T ss_pred ccccccccccccceEEEEECCCCccHHHHHHHHhCCC---CCCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhh
Confidence 3467889999999999999999999999999999965 458999999999853 455667899998776667889
Q ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHh-----CC--CEEEE
Q 007952 84 KETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIII-----NP--SLLFL 156 (583)
Q Consensus 84 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~-----~p--~illL 156 (583)
.+++... . +.++....++++...++|.+.... .+.+|||||.|||-+|...+. || ++|+|
T Consensus 90 ~~YL~L~----q----P~~~~a~~i~~i~~~L~l~DKL~R-----s~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLll 156 (248)
T COG4138 90 WHYLTLH----Q----PDKTRTELLNDVAGALALDDKLGR-----STNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLL 156 (248)
T ss_pred hhhhhhc----C----chHHHHHHHHHHHhhhcccchhhh-----hhhhcCcccceeeEEeEEEEEecCCCCccceeEEe
Confidence 9888653 2 345666778889999999865543 467999999999999987763 44 69999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 157 DEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 157 DEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|||.++||...+..+-..|.+++.+|.+||++.||.+. ..+-+|++.+|+.|++...|..+|++
T Consensus 157 DEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNh-TLrhA~~~wLL~rG~l~~~G~~~eVl 220 (248)
T COG4138 157 DEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNH-TLRHAHRAWLLKRGKLLASGRREEVL 220 (248)
T ss_pred cCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhh-HHHHHHHHHHHhcCeEEeecchhhhc
Confidence 99999999999999999999999999999999999876 56789999999999999999999875
No 373
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.96 E-value=4.8e-29 Score=242.21 Aligned_cols=165 Identities=18% Similarity=0.265 Sum_probs=130.4
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC-------CCcccEEEECCccCCc-cccccEEEEccCCCCCCCCC
Q 007952 11 NGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-------PTVGGSITYNDHPYSK-SLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 11 ~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~-------~~~~G~I~~~g~~~~~-~~~~~i~yv~Q~~~~~~~lT 82 (583)
+++++++++| +++|+||||||||||+++|+|.... ....|++.++|++... ..+++++||+|++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~---- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR---- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc----
Confidence 6789999999 9999999999999999999986421 1224578888876533 2357799999998765
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHH----hCCCEEEEeC
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEII----INPSLLFLDE 158 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~----~~p~illLDE 158 (583)
|.. . ..++++++++. .+..++ .+..||||||||++||++++ .+|++++|||
T Consensus 89 ------~~~--~---------~~~~~~~~l~~---~~~~~~-----~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDE 143 (197)
T cd03278 89 ------YSI--I---------SQGDVSEIIEA---PGKKVQ-----RLSLLSGGEKALTALALLFAIFRVRPSPFCVLDE 143 (197)
T ss_pred ------eeE--E---------ehhhHHHHHhC---CCcccc-----chhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeC
Confidence 110 0 12356667766 333333 46799999999999999997 4669999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcC
Q 007952 159 PTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 208 (583)
Q Consensus 159 PtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~ 208 (583)
||+|||+.++..+.+.|+++++ +.|||++||++. ..+.+|+++.+..
T Consensus 144 P~~~LD~~~~~~l~~~l~~~~~-~~tiIiitH~~~--~~~~~d~v~~~~~ 190 (197)
T cd03278 144 VDAALDDANVERFARLLKEFSK-ETQFIVITHRKG--TMEAADRLYGVTM 190 (197)
T ss_pred CcccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHH--HHhhcceEEEEEe
Confidence 9999999999999999999875 789999999975 3478999999864
No 374
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.95 E-value=1.3e-27 Score=261.31 Aligned_cols=190 Identities=28% Similarity=0.455 Sum_probs=154.8
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCC-CCCCCCCHH
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDD-VLFPHLTVK 84 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~-~~~~~lTv~ 84 (583)
.+.+++++||.+.+|+.+||+||||+|||||||+|+|... +.+|+|.+.-. -++||..|+. .+.+..|+.
T Consensus 334 ~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~--~~~G~v~~g~~-------v~igyf~Q~~~~l~~~~t~~ 404 (530)
T COG0488 334 GRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELG--PLSGTVKVGET-------VKIGYFDQHRDELDPDKTVL 404 (530)
T ss_pred CceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcc--cCCceEEeCCc-------eEEEEEEehhhhcCccCcHH
Confidence 3689999999999999999999999999999999999653 45899977532 3599999986 445888999
Q ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCC
Q 007952 85 ETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLD 164 (583)
Q Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD 164 (583)
|++.-.. |. ..+..+...|..++++...- ...++.||||||.|+.+|+.++.+|.+|+|||||+.||
T Consensus 405 d~l~~~~----~~-----~~e~~~r~~L~~f~F~~~~~----~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLD 471 (530)
T COG0488 405 EELSEGF----PD-----GDEQEVRAYLGRFGFTGEDQ----EKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLD 471 (530)
T ss_pred HHHHhhC----cc-----ccHHHHHHHHHHcCCChHHH----hCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCC
Confidence 9886431 11 11566888999999974322 13467999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEE-cChhhHHH
Q 007952 165 STTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF-GKASEAMA 222 (583)
Q Consensus 165 ~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~-G~~~~~~~ 222 (583)
..+...+.+.|.+. .-|||++|||. .-+-+.+++++.+.+ ++..+ |..++..+
T Consensus 472 i~s~~aLe~aL~~f---~Gtvl~VSHDr-~Fl~~va~~i~~~~~-~~~~~~g~y~~y~~ 525 (530)
T COG0488 472 IESLEALEEALLDF---EGTVLLVSHDR-YFLDRVATRIWLVED-KVEEFEGGYEDYLE 525 (530)
T ss_pred HHHHHHHHHHHHhC---CCeEEEEeCCH-HHHHhhcceEEEEcC-ceeEcCCCHHHHHH
Confidence 99999999999876 45999999995 457889999999988 55444 77666443
No 375
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.95 E-value=1e-27 Score=240.63 Aligned_cols=189 Identities=16% Similarity=0.290 Sum_probs=133.7
Q ss_pred CccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCC--------------CCCccc--------EEEECCcc-
Q 007952 3 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLM--------------EPTVGG--------SITYNDHP- 59 (583)
Q Consensus 3 ~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~--------------~~~~~G--------~I~~~g~~- 59 (583)
+.+++.++++++ |++++|+||||||||||+++|++.+. ..+.+| +|.+++.+
T Consensus 11 sy~~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~~~~~~ 85 (243)
T cd03272 11 SYKDQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNSDN 85 (243)
T ss_pred CcccCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEEEcCCC
Confidence 455677788876 78999999999999999999983210 011234 55665532
Q ss_pred ---CC---ccccccEEEEccCCCCCC-CCCHHHHHHHHHHcCCCCCCCH-HHHHHHHHHHHHHcCCCccccccccCccCc
Q 007952 60 ---YS---KSLKSKIGFVTQDDVLFP-HLTVKETLTYAALLRLPNTLTK-QQKEKRAIDVINELGLERCQDTMIGGSFVR 131 (583)
Q Consensus 60 ---~~---~~~~~~i~yv~Q~~~~~~-~lTv~e~l~~~~~~~~~~~~~~-~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~ 131 (583)
.. ...++.++|++|+..+++ ..|..|...+............ .....++ .+.+++.+..+. .++
T Consensus 86 ~~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i---~~l~~l~~~~~~-----~~~ 157 (243)
T cd03272 86 RFPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKI---NSLTNMKQDEQQ-----EMQ 157 (243)
T ss_pred ccCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCch---HHhhhccccccc-----ccc
Confidence 11 124667999999887776 4677776666554432211000 0001122 233444433333 457
Q ss_pred ccChHHHHHHHHHHHHHh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEc
Q 007952 132 GVSGGERKRVCIGNEIII----NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG 207 (583)
Q Consensus 132 ~LSgGerqRv~ia~~L~~----~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~ 207 (583)
.||||||||++||++|+. +|+++++||||+|||+.++..+.+.|+++++ ++|||+++|++ ++.+.||++++|.
T Consensus 158 ~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~~--~~~~~~d~i~~l~ 234 (243)
T cd03272 158 QLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD-GAQFITTTFRP--ELLEVADKFYGVK 234 (243)
T ss_pred ccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecCH--HHHhhCCEEEEEE
Confidence 899999999999999974 5899999999999999999999999999865 78889888884 4678999999985
No 376
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.95 E-value=5.1e-29 Score=244.68 Aligned_cols=181 Identities=15% Similarity=0.180 Sum_probs=136.0
Q ss_pred CccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCC
Q 007952 3 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 3 ~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lT 82 (583)
+.+++.+++++++ ++++|+||||||||||+++|.- ++|.+.....++++++++|+..+++.+|
T Consensus 13 ~~~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~------------~~G~~~~~~~~~~i~~~~~~~~~~~~~~ 75 (212)
T cd03274 13 SYAGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLF------------VFGFRASKMRQKKLSDLIHNSAGHPNLD 75 (212)
T ss_pred cCCCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHH------------HhccCHHHhhhhhHHHHhcCCCCCCCCc
Confidence 4567789999887 7999999999999999999982 1222221122356899999998999999
Q ss_pred HHHHHHHHHHcCCC-----CCCCHHHHHH--HHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHh----CC
Q 007952 83 VKETLTYAALLRLP-----NTLTKQQKEK--RAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIII----NP 151 (583)
Q Consensus 83 v~e~l~~~~~~~~~-----~~~~~~~~~~--~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~----~p 151 (583)
++|.+.+....... .....+.... ...++++.++|.+..++. ++.+|+|||||++||++++. +|
T Consensus 76 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~-----~~~lS~G~~~r~~la~al~~~~~~~p 150 (212)
T cd03274 76 SCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKN-----ISNLSGGEKTLSSLALVFALHHYKPT 150 (212)
T ss_pred eEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccc-----hhhcCHHHHHHHHHHHHHHhcccCCC
Confidence 99887765432100 0011111010 124566777887766654 46899999999999999974 57
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcC
Q 007952 152 SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 208 (583)
Q Consensus 152 ~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~ 208 (583)
+++++||||+|||+.+...+.+.|+++++ +.|+|++||++ ++.+.||++++|+.
T Consensus 151 ~ililDEPt~gLD~~~~~~l~~~l~~~~~-~~~~iivs~~~--~~~~~~d~v~~~~~ 204 (212)
T cd03274 151 PLYVMDEIDAALDFRNVSIVANYIKERTK-NAQFIVISLRN--NMFELADRLVGIYK 204 (212)
T ss_pred CEEEEcCCCcCCCHHHHHHHHHHHHHHcC-CCEEEEEECcH--HHHHhCCEEEEEEe
Confidence 99999999999999999999999999864 67888888985 57889999999974
No 377
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.94 E-value=1.6e-27 Score=240.44 Aligned_cols=186 Identities=18% Similarity=0.247 Sum_probs=137.5
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCc-cCCc------cccccEEEEccCC---------CCCC
Q 007952 16 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH-PYSK------SLKSKIGFVTQDD---------VLFP 79 (583)
Q Consensus 16 ~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~-~~~~------~~~~~i~yv~Q~~---------~~~~ 79 (583)
.+.+| +++|+||||||||||+++|++.+. +...|++...|. ++-. ..+.++++++|++ .+.|
T Consensus 22 ~~~~~-~~~IvG~NGsGKStll~Ai~~ll~-~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~ 99 (251)
T cd03273 22 GFDPQ-FNAITGLNGSGKSNILDAICFVLG-ITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYP 99 (251)
T ss_pred cCCCC-eEEEECCCCCCHHHHHHHHHHHhc-ccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCc
Confidence 44444 999999999999999999999663 223567877775 3211 1234799999985 3466
Q ss_pred CCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccc---------------cccCccCcccChHHHHHHHHH
Q 007952 80 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDT---------------MIGGSFVRGVSGGERKRVCIG 144 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~---------------~ig~~~~~~LSgGerqRv~ia 144 (583)
.+||.+++......+...+ .++...+++.+.++.+|+...... ..-+..+.+||||||||++||
T Consensus 100 ~ltV~r~I~~~~~~~~~in-~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la 178 (251)
T cd03273 100 EITVTRQIVLGGTNKYLIN-GHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALS 178 (251)
T ss_pred eEEEEEEEEcCCceEEEEC-CEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHH
Confidence 8899988865422110000 122334678899999998611000 011235679999999999999
Q ss_pred HHHH----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEc
Q 007952 145 NEII----INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG 207 (583)
Q Consensus 145 ~~L~----~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~ 207 (583)
++|+ .+|+++++||||+|||+.++..+.+.|++++ +|.|||++||++ ++.+.||+++-+.
T Consensus 179 ~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~-~g~~ii~iSH~~--~~~~~~d~v~~~~ 242 (251)
T cd03273 179 LILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF-KGSQFIVVSLKE--GMFNNANVLFRTR 242 (251)
T ss_pred HHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECCH--HHHHhCCEEEEEE
Confidence 9998 5789999999999999999999999999985 488999999994 5678899998875
No 378
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.94 E-value=1.1e-25 Score=270.21 Aligned_cols=138 Identities=25% Similarity=0.365 Sum_probs=113.2
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCccCcccChHHHHHHHHHHHHH---hCCC
Q 007952 77 LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC-QDTMIGGSFVRGVSGGERKRVCIGNEII---INPS 152 (583)
Q Consensus 77 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~ig~~~~~~LSgGerqRv~ia~~L~---~~p~ 152 (583)
.+...||.|+|.+...-........++..+++ ++++.+||.+. .+. .+.+||||||||++||++|+ .+|+
T Consensus 759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q-----~~~tLSGGE~QRV~LAraL~~~~~~P~ 832 (1809)
T PRK00635 759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGR-----PLSSLSGGEIQRLKLAYELLAPSKKPT 832 (1809)
T ss_pred ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcC-----ccccCCHHHHHHHHHHHHHhhcCCCCC
Confidence 45678999999886542111112234455566 58899999764 444 45799999999999999998 6999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEc------CCeEEEEcChhhHHH
Q 007952 153 LLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG------KGSLLYFGKASEAMA 222 (583)
Q Consensus 153 illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~------~G~iv~~G~~~~~~~ 222 (583)
+++|||||+|||+.+...+++.|++++++|.|||+++|++. .+ +.+|++++|. +|+++..|+++++..
T Consensus 833 LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~-~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~~ 906 (1809)
T PRK00635 833 LYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMH-VV-KVADYVLELGPEGGNLGGYLLASCSPEELIH 906 (1809)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-HhCCEEEEEccCCCCCCCEEEEeCCHHHHHh
Confidence 99999999999999999999999999988999999999975 35 8999999996 789999999988753
No 379
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.94 E-value=2.2e-26 Score=224.90 Aligned_cols=166 Identities=17% Similarity=0.267 Sum_probs=126.0
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHh----CCCCCCCcccEEEECCccCC-ccccccEEEEccCC-----CCCCC
Q 007952 11 NGITGSVNPGEVLALMGPSGSGKTTLLNLLS----GRLMEPTVGGSITYNDHPYS-KSLKSKIGFVTQDD-----VLFPH 80 (583)
Q Consensus 11 ~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~----g~~~~~~~~G~I~~~g~~~~-~~~~~~i~yv~Q~~-----~~~~~ 80 (583)
+..++++.+| +++|+||||||||||+++|. |... +.+|.+..+...+. ...+..+++++|++ .....
T Consensus 14 ~~~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~--~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~ 90 (204)
T cd03240 14 ERSEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELP--PNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRS 90 (204)
T ss_pred CceEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCC--cccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEE
Confidence 4456778888 99999999999999999995 7543 34455542222222 23456799999987 34455
Q ss_pred CCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHH------HHHHHHHHhCCCEE
Q 007952 81 LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR------VCIGNEIIINPSLL 154 (583)
Q Consensus 81 lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqR------v~ia~~L~~~p~il 154 (583)
+|+.|++.+. +.+ .+++.+ + ..++.||+||||| ++||++++.+|+++
T Consensus 91 ~~~~~~~~~~---------~~~----~~~~~~---------~-----~~~~~LS~G~~~~~~la~rlala~al~~~p~il 143 (204)
T cd03240 91 LAILENVIFC---------HQG----ESNWPL---------L-----DMRGRCSGGEKVLASLIIRLALAETFGSNCGIL 143 (204)
T ss_pred hhHhhceeee---------chH----HHHHHH---------h-----cCccccCccHHHHHHHHHHHHHHHHhccCCCEE
Confidence 6888887542 111 122333 2 2457899999996 78999999999999
Q ss_pred EEeCCCCCCCHHHHH-HHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcC
Q 007952 155 FLDEPTSGLDSTTAL-RIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGK 208 (583)
Q Consensus 155 lLDEPtsgLD~~~~~-~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~ 208 (583)
++||||++||+.++. .+.+.|++++++ |.|||++||++. ..+.||+++.|.+
T Consensus 144 llDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~--~~~~~d~i~~l~~ 197 (204)
T cd03240 144 ALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEE--LVDAADHIYRVEK 197 (204)
T ss_pred EEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHH--HHhhCCEEEEEee
Confidence 999999999999999 999999999876 889999999964 4567999999964
No 380
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.93 E-value=7.1e-26 Score=222.88 Aligned_cols=179 Identities=17% Similarity=0.165 Sum_probs=124.6
Q ss_pred eceEEEEe-CCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECC--ccCC-ccccccEEEEccCCCCCCCCCHHHH
Q 007952 11 NGITGSVN-PGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND--HPYS-KSLKSKIGFVTQDDVLFPHLTVKET 86 (583)
Q Consensus 11 ~~vs~~i~-~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g--~~~~-~~~~~~i~yv~Q~~~~~~~lTv~e~ 86 (583)
++++|... +|++++|+||||||||||+++|++.+.. +..+....+. ..+. ...+..+++++|++.... ++.+.
T Consensus 18 ~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g-~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~--~~~r~ 94 (213)
T cd03279 18 QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYG-KTPRYGRQENLRSVFAPGEDTAEVSFTFQLGGKKY--RVERS 94 (213)
T ss_pred eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEec-CccccccchhHHHHhcCCCccEEEEEEEEECCeEE--EEEEe
Confidence 45666543 5889999999999999999999964432 2223333321 1111 234566999999863311 12111
Q ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHh----------CCCEEEE
Q 007952 87 LTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIII----------NPSLLFL 156 (583)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~----------~p~illL 156 (583)
. ..+.++..+.+ .++..++.+..+ ..+..||||||||+++|++|+. +|++++|
T Consensus 95 ~----------gl~~~~~~~~~--~l~~g~l~~~l~-----~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lll 157 (213)
T cd03279 95 R----------GLDYDQFTRIV--LLPQGEFDRFLA-----RPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFI 157 (213)
T ss_pred c----------CCCHHHHHHhh--hhhhcchHHHhc-----CCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEE
Confidence 1 22222222211 123333433333 3467899999999999999985 5789999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCe
Q 007952 157 DEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 210 (583)
Q Consensus 157 DEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~ 210 (583)
||||+|||+.+...+.+.|++++++|+|||++||++. .+...+|+++++++|.
T Consensus 158 DEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~-~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 158 DEGFGTLDPEALEAVATALELIRTENRMVGVISHVEE-LKERIPQRLEVIKTPG 210 (213)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchH-HHHhhCcEEEEEecCC
Confidence 9999999999999999999999877999999999975 4678899999999874
No 381
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.93 E-value=1e-24 Score=252.11 Aligned_cols=126 Identities=29% Similarity=0.458 Sum_probs=107.0
Q ss_pred CCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCcccChHHHHHHHHHHHHHhCC---CEEEE
Q 007952 81 LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGERKRVCIGNEIIINP---SLLFL 156 (583)
Q Consensus 81 lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p---~illL 156 (583)
+||.|++.|...++ + ..+..+.++.+||.+ ..+. .+.+||||||||+.||++|+.+| ++++|
T Consensus 792 ltv~E~l~~f~~~~------~---i~~~l~~L~~vgL~~l~l~~-----~~~tLSgGEkQRl~LAraL~~~p~~~~llIL 857 (943)
T PRK00349 792 MTVEEALEFFEAIP------K---IARKLQTLVDVGLGYIKLGQ-----PATTLSGGEAQRVKLAKELSKRSTGKTLYIL 857 (943)
T ss_pred CcHHHHHHHHHhch------h---hhHHHHHHHHCCCCcccccC-----CcccCCHHHHHHHHHHHHHhcCCCCCeEEEE
Confidence 78999998875431 1 123467899999975 2343 45789999999999999999999 99999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEE------cCCeEEEEcChhhHHH
Q 007952 157 DEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL------GKGSLLYFGKASEAMA 222 (583)
Q Consensus 157 DEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~~ 222 (583)
||||+|||+.+...+++.|++++++|.|||+++|++.. + +.+|+++.| ++|++++.|+++++..
T Consensus 858 DEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~-i-~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~ 927 (943)
T PRK00349 858 DEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDV-I-KTADWIIDLGPEGGDGGGEIVATGTPEEVAK 927 (943)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-H-HhCCEEEEecCCcCCCCCEEEEeCCHHHHHh
Confidence 99999999999999999999998889999999999753 4 679999999 6899999999998753
No 382
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.93 E-value=4.9e-25 Score=231.20 Aligned_cols=207 Identities=23% Similarity=0.377 Sum_probs=177.3
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccC-C---c--cccccEEEEccCC---CC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY-S---K--SLKSKIGFVTQDD---VL 77 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~-~---~--~~~~~i~yv~Q~~---~~ 77 (583)
...+++|||++++||+++|.|-.|-|-+.|+.+|+|..+ +.+|+|.++|+++ . . ..+..++|||+|- .+
T Consensus 271 ~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~--~~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Gl 348 (501)
T COG3845 271 VTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRK--PASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGL 348 (501)
T ss_pred CceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCc--cCCceEEECCEeccccCCHHHHHhcCCccCChhhccCcc
Confidence 467999999999999999999999999999999999653 3459999999986 2 1 2346799999985 57
Q ss_pred CCCCCHHHHHHHHHHcCCC----CCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCE
Q 007952 78 FPHLTVKETLTYAALLRLP----NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSL 153 (583)
Q Consensus 78 ~~~lTv~e~l~~~~~~~~~----~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~i 153 (583)
.+.+|+.||+.+...-+.| ..+...+.++.+.+++++++...... ....+.||||++||+-+||+|..+|++
T Consensus 349 v~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~----~~~a~~LSGGNqQK~IlaREl~~~p~l 424 (501)
T COG3845 349 VLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSP----DAPARSLSGGNQQKLILARELARRPDL 424 (501)
T ss_pred ccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCC----CcchhhcCCcceehhhhhhhhccCCCE
Confidence 8899999999876543211 12566778888999999999873322 134689999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhH
Q 007952 154 LFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 220 (583)
Q Consensus 154 llLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 220 (583)
|+..+||.|||..+...|.+.|.+.+++|+.|++++-+. +|++++||+|.+|.+|+++...+++++
T Consensus 425 LI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dL-DEil~lsDrIaVi~~Gri~~~~~~~~~ 490 (501)
T COG3845 425 LIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDL-DEILELSDRIAVIYEGRIVGIVPPEEA 490 (501)
T ss_pred EEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhH-HHHHHhhheeeeeeCCceecccccccC
Confidence 999999999999999999999999999999999999996 579999999999999999998888763
No 383
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.92 E-value=5.7e-25 Score=239.41 Aligned_cols=184 Identities=29% Similarity=0.464 Sum_probs=147.1
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCH
Q 007952 4 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTV 83 (583)
Q Consensus 4 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv 83 (583)
++.+..|++.|+.+++||-+.|.||||||||||+|+|+|.-+ --+|+|..- ....+-|+||.+.+... |.
T Consensus 403 p~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP--~g~G~I~~P-------~~~~~lflpQ~PY~p~G-tL 472 (604)
T COG4178 403 PDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWP--WGSGRISMP-------ADSALLFLPQRPYLPQG-TL 472 (604)
T ss_pred CCCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCc--cCCCceecC-------CCCceEEecCCCCCCCc-cH
Confidence 445689999999999999999999999999999999999764 335776442 12458899999997766 99
Q ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCcccccccc-CccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCC
Q 007952 84 KETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIG-GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 162 (583)
Q Consensus 84 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig-~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsg 162 (583)
||-+.|.... ... .++.+.++|.++||.+..+..-+ ++.-+.||+|||||+++||.|+++|++++|||.|++
T Consensus 473 re~l~YP~~~---~~~----~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsA 545 (604)
T COG4178 473 REALCYPNAA---PDF----SDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSA 545 (604)
T ss_pred HHHHhCCCCC---CCC----ChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhc
Confidence 9999875321 112 34557789999999877665322 223468999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEc
Q 007952 163 LDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG 207 (583)
Q Consensus 163 LD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~ 207 (583)
||..++..+.+.+++-. .+.|||.+.|++. +..+.++.+-+.
T Consensus 546 LDe~~e~~l~q~l~~~l-p~~tvISV~Hr~t--l~~~h~~~l~l~ 587 (604)
T COG4178 546 LDEETEDRLYQLLKEEL-PDATVISVGHRPT--LWNFHSRQLELL 587 (604)
T ss_pred cChHHHHHHHHHHHhhC-CCCEEEEeccchh--hHHHHhhheeec
Confidence 99999999999998743 3899999999975 456666655553
No 384
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.92 E-value=1.1e-23 Score=243.15 Aligned_cols=125 Identities=27% Similarity=0.459 Sum_probs=104.3
Q ss_pred CCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCccCcccChHHHHHHHHHHHHHh---CCCEEE
Q 007952 80 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC-QDTMIGGSFVRGVSGGERKRVCIGNEIII---NPSLLF 155 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~ig~~~~~~LSgGerqRv~ia~~L~~---~p~ill 155 (583)
++||.|.+.|...+. . ..+..++++.+||... .+ +.+++|||||+||+.||++|+. +|++++
T Consensus 789 ~~tv~e~~~f~~~~~---~------i~~~l~~L~~~gL~~l~l~-----~~~~tLSgGe~QRl~LA~aL~~~~~~p~llI 854 (924)
T TIGR00630 789 DMTVEEAYEFFEAVP---S------ISRKLQTLCDVGLGYIKLG-----QPATTLSGGEAQRIKLAKELSKRSTGRTLYI 854 (924)
T ss_pred CCcHHHHHHHHHhcc---c------hhHHHHHHHHcCCCchhhc-----CccccCCHHHHHHHHHHHHHhhcCCCCCEEE
Confidence 478888888765431 0 1234578899999752 33 3467999999999999999997 599999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEE------cCCeEEEEcChhhH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL------GKGSLLYFGKASEA 220 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~ 220 (583)
|||||+|||+.+...+++.|+++.++|.|||+++|++. .+ +.+|+++.| ++|++++.|+++++
T Consensus 855 LDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~-~i-~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 855 LDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLD-VI-KTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 99999999999999999999999888999999999975 34 679999999 79999999998864
No 385
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.91 E-value=4.4e-25 Score=207.34 Aligned_cols=218 Identities=22% Similarity=0.333 Sum_probs=169.7
Q ss_pred CCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCC--CcccEEEECCccCC---c-c----ccccEEEE
Q 007952 2 TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP--TVGGSITYNDHPYS---K-S----LKSKIGFV 71 (583)
Q Consensus 2 ~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~--~~~G~I~~~g~~~~---~-~----~~~~i~yv 71 (583)
|+.+..++++++|++++.||+-+++|+||||||-.-|+|+|..... .+.-...+++.++- . + ..+.|+++
T Consensus 15 TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMI 94 (330)
T COG4170 15 TSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMI 94 (330)
T ss_pred cCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhh
Confidence 6778889999999999999999999999999999999999965321 12234455555431 1 1 22458899
Q ss_pred ccCCC--CCCCCCHHHHHHHHHHcCCCCC-C--CHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHH
Q 007952 72 TQDDV--LFPHLTVKETLTYAALLRLPNT-L--TKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNE 146 (583)
Q Consensus 72 ~Q~~~--~~~~lTv~e~l~~~~~~~~~~~-~--~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~ 146 (583)
+|++. +-|.-+|...|.-..-...-++ . .-..+++++-++|..+|+.+..|-. ..++.+|.-||-|+|+||.|
T Consensus 95 FQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM--~SYP~ElTeGE~QKVMIA~A 172 (330)
T COG4170 95 FQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIM--RSYPYELTEGECQKVMIAIA 172 (330)
T ss_pred hcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHH--HhCcchhccCcceeeeeehh
Confidence 99974 4555455433321110000000 0 1124567788999999999877643 46789999999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 147 IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 147 L~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
++.+|++|+.||||+.+|+.++.+|.++|.++.. +|.||+.++||.. .+-+.||++-+|.-|+-++.++.+++++
T Consensus 173 ~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~-~is~W~d~i~VlYCGQ~~ESa~~e~l~~ 248 (330)
T COG4170 173 LANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQ-MISQWADKINVLYCGQTVESAPSEELVT 248 (330)
T ss_pred hccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHH-HHHHHhhheEEEEecccccccchhHHhc
Confidence 9999999999999999999999999999999975 5899999999965 4889999999999999999999998874
No 386
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.91 E-value=2.8e-25 Score=225.73 Aligned_cols=189 Identities=25% Similarity=0.311 Sum_probs=152.7
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCCCHH
Q 007952 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLTVK 84 (583)
Q Consensus 9 iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~lTv~ 84 (583)
=+..||++|++||++-|+|.||||||||++.|.|... |.+|+|++||+|++. ++|+-++-|+-|-.+|+.+--.
T Consensus 338 hvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~--PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~~ 415 (546)
T COG4615 338 HVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQ--PQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGP 415 (546)
T ss_pred eecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccC--CCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhhCC
Confidence 3678999999999999999999999999999999653 679999999999863 4677788888888888753211
Q ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCC
Q 007952 85 ETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLD 164 (583)
Q Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD 164 (583)
+.. ...+.++..++.+.|.+...-+-|+-..-.||.|||||+++-.||+-+-+|+++||=-+.-|
T Consensus 416 ------------e~~---as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQD 480 (546)
T COG4615 416 ------------EGK---ASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQD 480 (546)
T ss_pred ------------ccC---CChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhccCC
Confidence 111 11244677888887766443332333456899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH-HHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcC
Q 007952 165 STTALRIVQMLQD-IAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 216 (583)
Q Consensus 165 ~~~~~~i~~~l~~-l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 216 (583)
|.-++.+.+.+-- ++++||||+.+|||- .-+..+||++.+.+|++++.-+
T Consensus 481 PaFRR~FY~~lLp~LK~qGKTI~aIsHDd--~YF~~ADrll~~~~G~~~e~tg 531 (546)
T COG4615 481 PAFRREFYQVLLPLLKEQGKTIFAISHDD--HYFIHADRLLEMRNGQLSELTG 531 (546)
T ss_pred hHHHHHHHHHHhHHHHHhCCeEEEEecCc--hhhhhHHHHHHHhcCceeeccc
Confidence 9999999877654 567799999999993 3578899999999999987553
No 387
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.90 E-value=1.2e-23 Score=204.56 Aligned_cols=168 Identities=20% Similarity=0.210 Sum_probs=122.6
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEE--CCccCC-----ccccccEEEEccCCCCCCCC
Q 007952 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITY--NDHPYS-----KSLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 9 iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~--~g~~~~-----~~~~~~i~yv~Q~~~~~~~l 81 (583)
-++++++++.+| +.+|+||||||||||+.+|...+ .|+... .|.... ......+.+++|+..++++
T Consensus 11 ~~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l-----~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~- 83 (198)
T cd03276 11 CHRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGL-----GGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDAN- 83 (198)
T ss_pred ceeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHh-----cCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccCC-
Confidence 347888899888 88999999999999999998422 122111 121110 1123457888887665541
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHH----HhCCCEEEEe
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEI----IINPSLLFLD 157 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L----~~~p~illLD 157 (583)
.. ....+++++++++. .+..++ .+++||+|||||++||+++ +.+|++++||
T Consensus 84 ----------------~~-~~~~~~~~~~~l~~---~~~~~~-----~~~~lS~G~k~r~~ia~al~~~~~~~p~illlD 138 (198)
T cd03276 84 ----------------PL-CVLSQDMARSFLTS---NKAAVR-----DVKTLSGGERSFSTVCLLLSLWEVMESPFRCLD 138 (198)
T ss_pred ----------------cC-CHHHHHHHHHHhcc---ccccCC-----cccccChhHHHHHHHHHHHHHhcccCCCEEEec
Confidence 01 11123557777766 444443 4679999999999999999 5899999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHC---CcEEEEEecCCChHHHhhcCeEEEEcCCe
Q 007952 158 EPTSGLDSTTALRIVQMLQDIAEA---GKTVVTTIHQPSSRLFHKFDKLILLGKGS 210 (583)
Q Consensus 158 EPtsgLD~~~~~~i~~~l~~l~~~---g~tii~~~H~~~~~i~~~~D~v~~L~~G~ 210 (583)
|||+|||+.++..+.+.|++++++ ++||++++|++.. +.+ +|+|.+|..++
T Consensus 139 EP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~-i~~-~d~v~~~~~~~ 192 (198)
T cd03276 139 EFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISG-LAS-SDDVKVFRMKD 192 (198)
T ss_pred CcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccc-ccc-ccceeEEEecC
Confidence 999999999999999999998653 3689999999764 544 59999998764
No 388
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.90 E-value=5.8e-24 Score=224.05 Aligned_cols=205 Identities=25% Similarity=0.350 Sum_probs=138.3
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCH
Q 007952 4 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTV 83 (583)
Q Consensus 4 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv 83 (583)
...+.+++|+++++.+|+-+||+|+|||||||+|++|.|+..+.|..=.++.-.+++.....+.+-++.+ +.-..
T Consensus 85 ~~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av~~v~~-----~~~~e 159 (614)
T KOG0927|consen 85 FHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQAVQAVVM-----ETDHE 159 (614)
T ss_pred cCCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHHHHHHhh-----hhHHH
Confidence 3467899999999999999999999999999999999998754333323333333222111111111110 00011
Q ss_pred HHHHHHHHH-c----------------CCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccChHHHHHHHHHH
Q 007952 84 KETLTYAAL-L----------------RLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGERKRVCIGN 145 (583)
Q Consensus 84 ~e~l~~~~~-~----------------~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~LSgGerqRv~ia~ 145 (583)
+.-+++-+. + .....+..+..+.++.+++..+|.. +..++ .+.++|||+|.|+++||
T Consensus 160 ~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k-----~~~~~SgGwrmR~aLAr 234 (614)
T KOG0927|consen 160 RKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDK-----KVKDLSGGWRMRAALAR 234 (614)
T ss_pred HHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHH-----HhhccCchHHHHHHHHH
Confidence 111111000 0 0001123334455566677766654 33333 46799999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCe-EEEEcChhhHH
Q 007952 146 EIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS-LLYFGKASEAM 221 (583)
Q Consensus 146 ~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~-iv~~G~~~~~~ 221 (583)
+|..+|++|+|||||+|||..+..-+-+.|.+..+ + ++++++|.- .-+-..|.+|+-|.+++ +.|.|+.+..+
T Consensus 235 ~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~-~-~lVi~sh~Q-Dfln~vCT~Ii~l~~kkl~~y~Gnydqy~ 308 (614)
T KOG0927|consen 235 ALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDR-I-ILVIVSHSQ-DFLNGVCTNIIHLDNKKLIYYEGNYDQYV 308 (614)
T ss_pred HHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccC-c-eEEEEecch-hhhhhHhhhhheecccceeeecCCHHHHh
Confidence 99999999999999999999999999998877532 2 899999974 45778999999999998 67788877644
No 389
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.89 E-value=3.9e-23 Score=208.00 Aligned_cols=183 Identities=17% Similarity=0.206 Sum_probs=120.0
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCcc-C-C---------ccccccEEEEccCCCC-CCCCC
Q 007952 15 GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP-Y-S---------KSLKSKIGFVTQDDVL-FPHLT 82 (583)
Q Consensus 15 ~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~-~-~---------~~~~~~i~yv~Q~~~~-~~~lT 82 (583)
+...++ +++|+|||||||||||++|++.+. +..|++..++.. + . ....-.+.|..|++.. .-..+
T Consensus 18 ~~~~~~-~~~i~G~NGsGKStll~ai~~~l~--~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~ 94 (247)
T cd03275 18 IGPFDR-FTCIIGPNGSGKSNLMDAISFVLG--EKSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRI 94 (247)
T ss_pred ecCCCC-eEEEECCCCCCHHHHHHHHHHHhC--CCcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEE
Confidence 333444 999999999999999999998653 224555443321 0 0 0112224444444321 00111
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCcccccc---------ccC--------ccCcccChHHHHHHHHHH
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTM---------IGG--------SFVRGVSGGERKRVCIGN 145 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~---------ig~--------~~~~~LSgGerqRv~ia~ 145 (583)
+++... ..+... +....+.++++++.+|+....+.. +.+ ..+..||||||||++||+
T Consensus 95 ~~~~~~---~~~ing---k~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~ 168 (247)
T cd03275 95 ITGGSS---SYRING---KVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALAL 168 (247)
T ss_pred EECCce---EEEECC---EEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHH
Confidence 111100 001111 011233456888889986322111 111 224789999999999999
Q ss_pred HHHhC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcC
Q 007952 146 EIIIN----PSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 208 (583)
Q Consensus 146 ~L~~~----p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~ 208 (583)
+++.+ |+++++||||+|||+..+..+.+.|++++++|.+||++||++ ++.+.+|++++|.+
T Consensus 169 al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~--~~~~~~d~i~~~~~ 233 (247)
T cd03275 169 LFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKE--EFFSKADALVGVYR 233 (247)
T ss_pred HHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCH--HHHhhCCeEEEEEe
Confidence 99875 899999999999999999999999999987799999999994 45788999999864
No 390
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.88 E-value=1.9e-22 Score=208.58 Aligned_cols=170 Identities=28% Similarity=0.378 Sum_probs=134.3
Q ss_pred eEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHHHHHHHHH
Q 007952 13 ITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAAL 92 (583)
Q Consensus 13 vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~l~~~~~ 92 (583)
=.+++..||+++++||||-||||+.++|+|.+. |++|+ . ..-+++|-||--.--.+.||++.|.-...
T Consensus 360 ~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ik--Pdeg~----~------~~~~vSyKPQyI~~~~~gtV~~~l~~~~~ 427 (591)
T COG1245 360 EEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIK--PDEGS----E------EDLKVSYKPQYISPDYDGTVEDLLRSAIR 427 (591)
T ss_pred cCCeeecceEEEEECCCCcchHHHHHHHhcccc--CCCCC----C------ccceEeecceeecCCCCCcHHHHHHHhhh
Confidence 345667788999999999999999999999764 56775 1 12358899997554456799998865433
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHH
Q 007952 93 LRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIV 172 (583)
Q Consensus 93 ~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~~~~~i~ 172 (583)
-+... .-.-.++++-|+|++..+.. +.+|||||.|||+||.+|..++++++||||++-||++.+..+-
T Consensus 428 ~~~~~-------s~~~~ei~~pl~l~~i~e~~-----v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~va 495 (591)
T COG1245 428 SAFGS-------SYFKTEIVKPLNLEDLLERP-----VDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVA 495 (591)
T ss_pred hhccc-------chhHHhhcCccchHHHHhcc-----cccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHH
Confidence 21111 12235678888888777764 5799999999999999999999999999999999999999999
Q ss_pred HHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEc
Q 007952 173 QMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLG 207 (583)
Q Consensus 173 ~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~ 207 (583)
+.+|++.++ ++|.+++-||... +--+.|++++..
T Consensus 496 kvIRR~~e~~~kta~vVdHDi~~-~dyvsDr~ivF~ 530 (591)
T COG1245 496 KVIRRFIENNEKTALVVDHDIYM-IDYVSDRLIVFE 530 (591)
T ss_pred HHHHHHHhhcCceEEEEecceeh-hhhhhceEEEEe
Confidence 999999864 7899999999653 444678887663
No 391
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.88 E-value=4.9e-23 Score=217.12 Aligned_cols=186 Identities=23% Similarity=0.346 Sum_probs=144.1
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccC--CCCCCCCCHHH
Q 007952 8 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQD--DVLFPHLTVKE 85 (583)
Q Consensus 8 ~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~--~~~~~~lTv~e 85 (583)
.++++++|-+..++.++++||||||||||||++.|.+. |..|.|.-.-+ .++++--|+ +.+--+.++-|
T Consensus 404 ~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~--p~~G~vs~~~H-------~~~~~y~Qh~~e~ldl~~s~le 474 (614)
T KOG0927|consen 404 MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQ--PTIGMVSRHSH-------NKLPRYNQHLAEQLDLDKSSLE 474 (614)
T ss_pred hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccc--ccccccccccc-------ccchhhhhhhHhhcCcchhHHH
Confidence 58889999999999999999999999999999999764 56787754322 234455554 23333567777
Q ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCH
Q 007952 86 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS 165 (583)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~ 165 (583)
++.=.. +.+...+.+..++..+||...... ..+++||+|||+||.+|+.++..|.+|+|||||+|||.
T Consensus 475 ~~~~~~--------~~~~~~e~~r~ilgrfgLtgd~q~----~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi 542 (614)
T KOG0927|consen 475 FMMPKF--------PDEKELEEMRSILGRFGLTGDAQV----VPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDI 542 (614)
T ss_pred HHHHhc--------cccchHHHHHHHHHHhCCCccccc----cchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCc
Confidence 764321 112344567889999999854443 25789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeE-EEEcChh
Q 007952 166 TTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL-LYFGKAS 218 (583)
Q Consensus 166 ~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~i-v~~G~~~ 218 (583)
.+...+-+.|.+. .-++|.++||-. -|-+.++++.+..+|.+ .+.|...
T Consensus 543 ~tid~laeaiNe~---~Ggvv~vSHDfr-lI~qVaeEi~~c~~~~~~~~~G~i~ 592 (614)
T KOG0927|consen 543 ETIDALAEAINEF---PGGVVLVSHDFR-LISQVAEEIWVCENGTVTKWDGDIE 592 (614)
T ss_pred hhHHHHHHHHhcc---CCceeeeechhh-HHHHHHHHhHhhccCceeecCccHH
Confidence 9999988888775 347999999965 47788999999988755 4566544
No 392
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.87 E-value=1.6e-21 Score=207.08 Aligned_cols=189 Identities=22% Similarity=0.345 Sum_probs=147.0
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHH
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 85 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e 85 (583)
+..+.+|+|++|++|+-+.|.||||||||+|+|+|+|+- |..+|++.--.+.- -+.+-||||.|.+--. |.||
T Consensus 447 g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLW--p~~~G~l~k~~~~~----~~~lfflPQrPYmt~G-TLRd 519 (659)
T KOG0060|consen 447 GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLW--PSTGGKLTKPTDGG----PKDLFFLPQRPYMTLG-TLRD 519 (659)
T ss_pred CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhccc--ccCCCeEEecccCC----CCceEEecCCCCcccc-chhh
Confidence 566788999999999999999999999999999999965 35678886433221 1458999999987655 9999
Q ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCcccccccc------CccCcccChHHHHHHHHHHHHHhCCCEEEEeCC
Q 007952 86 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIG------GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEP 159 (583)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig------~~~~~~LSgGerqRv~ia~~L~~~p~illLDEP 159 (583)
.+.|...--. ...+...++++.+.|+.++|.|..+..=| -+....||+||+||+++||-+.++|++-+|||.
T Consensus 520 QvIYP~~~~~--~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~ 597 (659)
T KOG0060|consen 520 QVIYPLKAED--MDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDEC 597 (659)
T ss_pred eeeccCcccc--ccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeech
Confidence 9988632111 11122234567788888888876553211 123467999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcC
Q 007952 160 TSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 208 (583)
Q Consensus 160 tsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~ 208 (583)
||++|......+.+.+++ .|.|.|-+.|..+ +.+.=|.++-|+.
T Consensus 598 TSAv~~dvE~~~Yr~~r~---~giT~iSVgHRkS--L~kfHd~~L~~~g 641 (659)
T KOG0060|consen 598 TSAVTEDVEGALYRKCRE---MGITFISVGHRKS--LWKFHDYVLRMDG 641 (659)
T ss_pred hhhccHHHHHHHHHHHHH---cCCeEEEeccHHH--HHhhhhEEEEecC
Confidence 999999999999888876 4999999999865 4565688888864
No 393
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.86 E-value=2.5e-21 Score=190.27 Aligned_cols=81 Identities=19% Similarity=0.224 Sum_probs=69.0
Q ss_pred cCcccChHHHHHHHHHHHH----HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-C-cEEEEEecCCChHHHhhcC-
Q 007952 129 FVRGVSGGERKRVCIGNEI----IINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-G-KTVVTTIHQPSSRLFHKFD- 201 (583)
Q Consensus 129 ~~~~LSgGerqRv~ia~~L----~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g-~tii~~~H~~~~~i~~~~D- 201 (583)
.+.+||||||||+.++.++ +.+|+++++||||+|||+.++..+++.|++++++ | .|+|++||+... +.+.+|
T Consensus 123 ~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~-~~~~~~~ 201 (213)
T cd03277 123 DPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLP-GLNYHEK 201 (213)
T ss_pred chhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhcc-CCcccCc
Confidence 4678999999998877554 4799999999999999999999999999999876 5 579999999654 456666
Q ss_pred -eEEEEcCCe
Q 007952 202 -KLILLGKGS 210 (583)
Q Consensus 202 -~v~~L~~G~ 210 (583)
++++|++|+
T Consensus 202 ~~v~~l~~g~ 211 (213)
T cd03277 202 MTVLCVYNGP 211 (213)
T ss_pred eEEEEEecCc
Confidence 788888886
No 394
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=4.3e-22 Score=208.96 Aligned_cols=192 Identities=24% Similarity=0.298 Sum_probs=134.3
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCC-CCCCCCC
Q 007952 4 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDD-VLFPHLT 82 (583)
Q Consensus 4 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~-~~~~~lT 82 (583)
.+.|.+|++-++++..|.-++|+|+||+|||||||+|+. |.| .+.+..++.+. -+++-.. .+..+.+
T Consensus 90 ~G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~--------~~v--~~f~veqE~~g--~~t~~~~~~l~~D~~ 157 (582)
T KOG0062|consen 90 YGGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN--------GQV--SGFHVEQEVRG--DDTEALQSVLESDTE 157 (582)
T ss_pred ecchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh--------cCc--CccCchhheec--cchHHHhhhhhccHH
Confidence 467889999999999999999999999999999999996 111 22222222221 1222221 2223333
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCC
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 162 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsg 162 (583)
+.+.+.--.. +.... +..+...++|..+|.++..-. ..++.||||=|-|+++||||..+|++|+|||||+.
T Consensus 158 ~~dfl~~e~~--l~~~~---~l~ei~~~~L~glGFt~emq~----~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNh 228 (582)
T KOG0062|consen 158 RLDFLAEEKE--LLAGL---TLEEIYDKILAGLGFTPEMQL----QPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNH 228 (582)
T ss_pred HHHHHHhhhh--hhccc---hHHHHHHHHHHhCCCCHHHHh----ccccccCcchhhHHHHHHHHhcCCCEEeecCCccc
Confidence 3332221100 00111 233444458889998754332 35689999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeE-EEEcChhhH
Q 007952 163 LDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL-LYFGKASEA 220 (583)
Q Consensus 163 LD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~i-v~~G~~~~~ 220 (583)
||..+..-+...|+.. +.|+|+++|| +.-+-..|..|+-+++-|+ .|.|..++.
T Consensus 229 LDv~av~WLe~yL~t~---~~T~liVSHD-r~FLn~V~tdIIH~~~~kL~~YkGN~~~F 283 (582)
T KOG0062|consen 229 LDVVAVAWLENYLQTW---KITSLIVSHD-RNFLNTVCTDIIHLENLKLDYYKGNYSQF 283 (582)
T ss_pred chhHHHHHHHHHHhhC---CceEEEEecc-HHHHHHHHHHHHHHhhhhhhhhcCcHHHH
Confidence 9999999999998875 4799999999 5556677888888877665 466665543
No 395
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.84 E-value=3e-21 Score=188.10 Aligned_cols=153 Identities=23% Similarity=0.246 Sum_probs=109.3
Q ss_pred eeceEEEEeCCe-EEEEECCCCCcHHHHHHHHh-CCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHHHH
Q 007952 10 LNGITGSVNPGE-VLALMGPSGSGKTTLLNLLS-GRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETL 87 (583)
Q Consensus 10 L~~vs~~i~~Ge-~~~i~G~nGaGKSTLl~~l~-g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~l 87 (583)
..++|+++.+|+ +++|.||||||||||||+|+ +... ...|. .+...-...++|..|...
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~--~~~G~------~vp~~~~~~~~~~~~~~~----------- 77 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLM--AQSGL------PIPAAEGSSLPVFENIFA----------- 77 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHH--HHcCC------CccccccccCcCccEEEE-----------
Confidence 348899999995 89999999999999999998 1100 00110 000000012334333211
Q ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 007952 88 TYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTT 167 (583)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~~ 167 (583)
.++.++..+. ....+|+||||++.++++ +.+|+++++|||++|||+..
T Consensus 78 --------------------------~lg~~~~l~~-----~~s~fs~g~~~~~~i~~~-~~~p~llllDEp~~glD~~~ 125 (200)
T cd03280 78 --------------------------DIGDEQSIEQ-----SLSTFSSHMKNIARILQH-ADPDSLVLLDELGSGTDPVE 125 (200)
T ss_pred --------------------------ecCchhhhhc-----CcchHHHHHHHHHHHHHh-CCCCcEEEEcCCCCCCCHHH
Confidence 1111111111 235799999999999987 48999999999999999999
Q ss_pred HHHHH-HHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEc
Q 007952 168 ALRIV-QMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 215 (583)
Q Consensus 168 ~~~i~-~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G 215 (583)
...+. ..++++++.|.|+|++||++ ++.+.+|++..|++|++.+.+
T Consensus 126 ~~~i~~~~l~~l~~~~~~vi~~tH~~--~l~~~~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 126 GAALAIAILEELLERGALVIATTHYG--ELKAYAYKREGVENASMEFDP 172 (200)
T ss_pred HHHHHHHHHHHHHhcCCEEEEECCHH--HHHHHHhcCCCeEEEEEEEec
Confidence 99996 47888887799999999983 577899999999999998874
No 396
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.84 E-value=1.8e-20 Score=176.07 Aligned_cols=197 Identities=23% Similarity=0.296 Sum_probs=148.6
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccC-------
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQD------- 74 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~------- 74 (583)
.-+++-|+|++++.|.-+.++|.||||||||||+|+|... .-.|.|.++|.+.-. .......|+--+
T Consensus 26 ~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhm--v~~~~v~VlgrsaFhDt~l~~Sgdl~YLGgeW~~~~~~ 103 (291)
T KOG2355|consen 26 SDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHM--VGGGVVQVLGRSAFHDTSLESSGDLSYLGGEWSKTVGI 103 (291)
T ss_pred CCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCccc--ccCCeEEEcCcCccccccccccCceeEecccccccccc
Confidence 4489999999999999999999999999999999999543 335899999976421 111223333322
Q ss_pred ---CCCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCC
Q 007952 75 ---DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINP 151 (583)
Q Consensus 75 ---~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p 151 (583)
--+-.++++.+.| |+... ... +|-+++++.+++.-. ...+.+|-||||||.|++.|++.-
T Consensus 104 agevplq~D~sae~mi-fgV~g-----~dp----~Rre~LI~iLDIdl~-------WRmHkvSDGqrRRVQicMGLL~Pf 166 (291)
T KOG2355|consen 104 AGEVPLQGDISAEHMI-FGVGG-----DDP----ERREKLIDILDIDLR-------WRMHKVSDGQRRRVQICMGLLKPF 166 (291)
T ss_pred cccccccccccHHHHH-hhccC-----CCh----hHhhhhhhheeccce-------EEEeeccccchhhhHHHHhcccce
Confidence 2233356776544 43211 111 334566777766421 234689999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 152 SLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 152 ~illLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
++|+|||-|-.||..++.++++.+++-+++ |.||+..||--.. +.....+++.+++|+++-.-+.++..+
T Consensus 167 kVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDG-Le~Wpthl~yi~~Gkl~~~l~~~~i~e 237 (291)
T KOG2355|consen 167 KVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDG-LETWPTHLVYIKSGKLVDNLKYQKIKE 237 (291)
T ss_pred eEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccc-hhhcchhEEEecCCeeeeccccchhhh
Confidence 999999999999999999999999998864 9999999998553 667789999999999998666665544
No 397
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=1.9e-20 Score=192.16 Aligned_cols=178 Identities=26% Similarity=0.412 Sum_probs=138.8
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCC--CCCCCC
Q 007952 4 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDD--VLFPHL 81 (583)
Q Consensus 4 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~--~~~~~l 81 (583)
.+.++++++++|-|.-...+||+||||.||||||++|.|.+. |..|+.. +..|-+||+-.|+. .+-..-
T Consensus 597 ~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~--P~~GE~R-------KnhrL~iG~FdQh~~E~L~~Ee 667 (807)
T KOG0066|consen 597 PGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLD--PNDGELR-------KNHRLRIGWFDQHANEALNGEE 667 (807)
T ss_pred CCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCC--CCcchhh-------ccceeeeechhhhhHHhhcccc
Confidence 367889999999999999999999999999999999999774 4567653 33455699988874 455556
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 161 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPts 161 (583)
|.-|.|.-.. +++.+ .+...|-.+||...++|. .++.||||||-||++|.--+..|+||||||||+
T Consensus 668 tp~EyLqr~F------Nlpyq----~ARK~LG~fGL~sHAHTi----kikdLSGGQKaRValaeLal~~PDvlILDEPTN 733 (807)
T KOG0066|consen 668 TPVEYLQRKF------NLPYQ----EARKQLGTFGLASHAHTI----KIKDLSGGQKARVALAELALGGPDVLILDEPTN 733 (807)
T ss_pred CHHHHHHHhc------CCChH----HHHHHhhhhhhhhccceE----eeeecCCcchHHHHHHHHhcCCCCEEEecCCCC
Confidence 7777765322 23332 345678899999888885 478999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcC
Q 007952 162 GLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 208 (583)
Q Consensus 162 gLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~ 208 (583)
+||..+...+-+.|++. .-.||+++||... +.+.--.+.++.+
T Consensus 734 NLDIESIDALaEAIney---~GgVi~VsHDeRL-i~eT~C~LwVvE~ 776 (807)
T KOG0066|consen 734 NLDIESIDALAEAINEY---NGGVIMVSHDERL-IVETDCNLWVVEN 776 (807)
T ss_pred CcchhhHHHHHHHHHhc---cCcEEEEecccce-eeecCceEEEEcc
Confidence 99999999998888876 3479999999543 3333334555544
No 398
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.83 E-value=1.9e-20 Score=193.89 Aligned_cols=169 Identities=31% Similarity=0.461 Sum_probs=126.1
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-------------ccc------ccEEEEccC---
Q 007952 17 VNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-------------SLK------SKIGFVTQD--- 74 (583)
Q Consensus 17 i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-------------~~~------~~i~yv~Q~--- 74 (583)
.++|++++|+||||-||||-+|+|+|.+.+ . =|+ .++.|-.+ .++ -++..-+|-
T Consensus 97 pr~G~V~GilG~NGiGKsTalkILaGel~P-N-LG~--~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~ 172 (591)
T COG1245 97 PRPGKVVGILGPNGIGKSTALKILAGELKP-N-LGR--YEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDL 172 (591)
T ss_pred CCCCcEEEEEcCCCccHHHHHHHHhCcccc-C-CCC--CCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHH
Confidence 468999999999999999999999997752 2 232 22222110 000 112222332
Q ss_pred -CCCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCE
Q 007952 75 -DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSL 153 (583)
Q Consensus 75 -~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~i 153 (583)
+..+.. ||.|-|.-. +..-+.+++++.++|++..|.. +.+|||||.||++||.+++++.++
T Consensus 173 iPk~~KG-~v~elLk~~------------de~g~~devve~l~L~nvl~r~-----v~~LSGGELQr~aIaa~l~rdADv 234 (591)
T COG1245 173 IPKVVKG-KVGELLKKV------------DERGKFDEVVERLGLENVLDRD-----VSELSGGELQRVAIAAALLRDADV 234 (591)
T ss_pred HHHHhcc-hHHHHHHhh------------hhcCcHHHHHHHhcchhhhhhh-----hhhcCchHHHHHHHHHHHhccCCE
Confidence 223332 677765421 1123578899999999887764 579999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcC
Q 007952 154 LFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 208 (583)
Q Consensus 154 llLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~ 208 (583)
+++|||||-||...+....+.++++++.+++||++.||+. .+--++|-|.++..
T Consensus 235 Y~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLa-vLD~lsD~vhI~YG 288 (591)
T COG1245 235 YFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLA-VLDYLSDFVHILYG 288 (591)
T ss_pred EEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHH-HHHHhhheeEEEec
Confidence 9999999999999999999999999988999999999964 34446888888863
No 399
>PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane
Probab=99.83 E-value=8.6e-22 Score=191.29 Aligned_cols=206 Identities=28% Similarity=0.549 Sum_probs=181.3
Q ss_pred HHHHHHHHHHHHH-hhcchhH-HHHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007952 328 QQYTILFRRGIKE-HRHDYFS-WLRITQVLATAVILGLLWWQSDSKSPKGLEDQAGLLFFIAVFWSFFPIFTAIFTFPQE 405 (583)
Q Consensus 328 ~q~~~l~~R~~~~-~r~~~~~-~~r~~~~~~~~li~G~lf~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~i~~~~~e 405 (583)
+|++.+++|+++. +|++... ..+++..++.++++|.+|.+++ ++.++. ++.|++++.+...++............|
T Consensus 1 ~q~~~l~~r~~~~~~r~~~~~~~~~~~~pl~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (210)
T PF01061_consen 1 RQIWALLRREFKRFWRNPFLGLIWSLIFPLLLLLIFGFIFGKLG-NSQDGF-NRPGLIFGSIIFSFFSSISGSSISFERE 78 (210)
T ss_pred CHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHhccc-cccccc-ccceeeehhhHHhhhhhcccchhhhhhh
Confidence 5999999999986 6777666 7788999999999999999887 344455 7788888777766555544555778899
Q ss_pred hHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 007952 406 RAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQGLGLAIGAILM 485 (583)
Q Consensus 406 r~v~~rE~~~~~Y~~~ay~la~~l~~lP~~~~~~~~~~~i~Y~~~gl~~~~~~f~~~~~~~~l~~~~~~~~g~~i~~~~~ 485 (583)
|..+.||+.++.|++.+|.+||.+.+++..++.++++..+.|++.|++.+ +|+.+++.++++.+++.++|.+++++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~g~~~~~~~~ 156 (210)
T PF01061_consen 79 RGTLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFE--SFFLFLLILLLSILCSSGLGLLLAALFP 156 (210)
T ss_pred ccccccccccccccchhhheeeccccccccccccchhhhhhhhhhccccc--cchheecccccccccccccccccccchh
Confidence 99999999999999999999999999999999999999999999999887 6677777788888999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHhhcccC--CCccchhhhhccCHHHHHHHHHHHHHc
Q 007952 486 DLKKATTLASVTIMTFMLAGGYFVQ--EVPVFISWIRYMSFNFHTYKILLKIQY 537 (583)
Q Consensus 486 ~~~~A~~~~~~~~~~~~l~~Gf~i~--~ip~~~~Wl~yis~~~ya~~~l~~~ef 537 (583)
+.+.+..+.+++..++++++|.+.| .+|+|++|+.|+||.+|++|++..++|
T Consensus 157 ~~~~~~~~~~~~~~~~~~~sg~~~p~~~lP~~~~~i~~~~P~~~~~~~~r~~~f 210 (210)
T PF01061_consen 157 SFRDASAISSLILLLLFFLSGVFFPLSSLPSWLRWISYLNPLTYAVEALRAALF 210 (210)
T ss_pred hhhhhhhhhhhcccccccceeeecchHHChHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 9999999999999999999999998 799999999999999999999998876
No 400
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.82 E-value=3.8e-19 Score=214.24 Aligned_cols=200 Identities=23% Similarity=0.360 Sum_probs=145.6
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhC-----CCCC--CCcccEEEECCccCCc--------------cccc
Q 007952 8 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSG-----RLME--PTVGGSITYNDHPYSK--------------SLKS 66 (583)
Q Consensus 8 ~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g-----~~~~--~~~~G~I~~~g~~~~~--------------~~~~ 66 (583)
.=|+|++.+|+-|.+++|.|.||||||||++-..- .+.. ....--|.+|-.|+.+ ..|+
T Consensus 1504 nNLk~v~v~iPlg~l~~vTGVSGSGKStLi~~~l~~~l~~~l~~g~~~~~~vi~vdQspIgrt~RS~paTY~g~fd~IR~ 1583 (1809)
T PRK00635 1504 HTIQNLNVSAPLHSLVAISGVSGSGKTSLLLEGFYKQACALIEKGPSVFSEIIFLDSHPQISSQRSDISTYFDIAPSLRN 1583 (1809)
T ss_pred ccCCcceeeccCCcEEEEeCCCCCcHHHHHHHHHHHHHHHHhcccccccCcEEEEeCCCCCCCCCCchhhhhhhHHHHHH
Confidence 34899999999999999999999999999974431 0000 0122346666655421 0000
Q ss_pred -------------------------------cEEEEccCCCCCC--------------------------------CCCH
Q 007952 67 -------------------------------KIGFVTQDDVLFP--------------------------------HLTV 83 (583)
Q Consensus 67 -------------------------------~i~yv~Q~~~~~~--------------------------------~lTv 83 (583)
.-|++.=+-.++| +|||
T Consensus 1584 lFA~~~~ak~rg~~~~~FSfN~~~GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~~e~L~v~~~gk~I~dvL~mtv 1663 (1809)
T PRK00635 1584 FYASLTQAKALNISASMFSTNTKQGQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQPLAQEVVYEGKHFGQLLQTPI 1663 (1809)
T ss_pred HHhcCHHHHHcCCCcccccccCCCCCCCCCccCceEEEecccCCCcccCCCCCCCcCCCHHHHhheeCCCCHHHHhcCCH
Confidence 0122211111111 4678
Q ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhC---CCEEEEeCCC
Q 007952 84 KETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIIN---PSLLFLDEPT 160 (583)
Q Consensus 84 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~---p~illLDEPt 160 (583)
.|.+.|... ..+-.+.-+.|+++||.... + ++...+|||||.||+-+|.+|..+ +.+++|||||
T Consensus 1664 ~ea~~~F~~---------~~~i~~~L~~L~~vGLgYl~---L-Gq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt 1730 (1809)
T PRK00635 1664 EEVAETFPF---------LKKIQKPLQALIDNGLGYLP---L-GQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIA 1730 (1809)
T ss_pred HHHHHHhhc---------cHHHHHHHHHHHHcCCCeee---C-CCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCC
Confidence 887777521 11233456788999997532 2 345678999999999999999876 7899999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEE------cCCeEEEEcChhhHHH
Q 007952 161 SGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL------GKGSLLYFGKASEAMA 222 (583)
Q Consensus 161 sgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~~ 222 (583)
+||++.....+++.|++|.+.|.|||++.|++ ++.+.+|.|+-| +.|+|++.|+|+++.+
T Consensus 1731 ~GLh~~d~~~Ll~~l~~L~~~g~tvivieH~~--~~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~ 1796 (1809)
T PRK00635 1731 TSLDNQQKSALLVQLRTLVSLGHSVIYIDHDP--ALLKQADYLIEMGPGSGKTGGKILFSGPPKDISA 1796 (1809)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCeEEEEeCCH--HHHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhh
Confidence 99999999999999999999999999999996 467789999999 3479999999999864
No 401
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.82 E-value=5.8e-19 Score=193.97 Aligned_cols=128 Identities=28% Similarity=0.483 Sum_probs=106.6
Q ss_pred CCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCC---CEEEE
Q 007952 80 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINP---SLLFL 156 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p---~illL 156 (583)
+|||.|...|.... + .-.+.-+.|.++||.-. ++| +...+|||||.||+-+|.+|..+. .+++|
T Consensus 783 ~MTveEA~~FF~~~------p---~I~rkLqtL~dVGLgYi---~LG-QpatTLSGGEaQRvKLA~EL~k~~tg~TlYiL 849 (935)
T COG0178 783 DMTVEEALEFFEAI------P---KIARKLQTLVDVGLGYI---KLG-QPATTLSGGEAQRVKLAKELSKRSTGKTLYIL 849 (935)
T ss_pred hccHHHHHHHHhcc------h---HHHHHHHHHHHcCcceE---ecC-CccccccchHHHHHHHHHHHhhccCCCeEEEe
Confidence 57888888876421 1 12344567888898632 233 457799999999999999999877 89999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEE------cCCeEEEEcChhhHHH
Q 007952 157 DEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL------GKGSLLYFGKASEAMA 222 (583)
Q Consensus 157 DEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~~ 222 (583)
||||+||-.....++++.|.+|.++|.|||++.|+. ++.+.+|.|+-| +.|+|+..|+|+++.+
T Consensus 850 DEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNL--dVIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~ 919 (935)
T COG0178 850 DEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNL--DVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAK 919 (935)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccc--ceEeecCEEEEcCCCCCCCCceEEEecCHHHHHh
Confidence 999999999999999999999999999999999985 467899999999 4579999999999875
No 402
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.81 E-value=3.9e-20 Score=179.94 Aligned_cols=136 Identities=18% Similarity=0.251 Sum_probs=102.4
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHH
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 85 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e 85 (583)
++.+++|+++.. |++++|+||||||||||+|+|+|... +...|.++.. -.+++|.+.+++.+|+.|
T Consensus 13 ~~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~-------l~~~G~~v~a-----~~~~~q~~~l~~~~~~~d 78 (199)
T cd03283 13 EKRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI-------LAQAGAPVCA-----SSFELPPVKIFTSIRVSD 78 (199)
T ss_pred CCeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH-------HHHcCCEEec-----CccCcccceEEEeccchh
Confidence 345677776665 79999999999999999999998431 1123444321 136678788999999999
Q ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCH
Q 007952 86 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS 165 (583)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~ 165 (583)
++.+... ....+. +++.++++.+++ .+|+++++|||++|+|+
T Consensus 79 ~l~~~~s------~~~~e~-~~~~~iL~~~~~-------------------------------~~p~llllDEp~~glD~ 120 (199)
T cd03283 79 DLRDGIS------YFYAEL-RRLKEIVEKAKK-------------------------------GEPVLFLLDEIFKGTNS 120 (199)
T ss_pred ccccccC------hHHHHH-HHHHHHHHhccC-------------------------------CCCeEEEEecccCCCCH
Confidence 9976431 112222 557777776642 69999999999999999
Q ss_pred HHHHHHH-HHHHHHHHCCcEEEEEecCCC
Q 007952 166 TTALRIV-QMLQDIAEAGKTVVTTIHQPS 193 (583)
Q Consensus 166 ~~~~~i~-~~l~~l~~~g~tii~~~H~~~ 193 (583)
.....+. ..++++.+.|.|+|++||++.
T Consensus 121 ~~~~~l~~~ll~~l~~~~~tiiivTH~~~ 149 (199)
T cd03283 121 RERQAASAAVLKFLKNKNTIGIISTHDLE 149 (199)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEcCcHH
Confidence 9998775 478888877999999999974
No 403
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.81 E-value=3.6e-19 Score=170.16 Aligned_cols=74 Identities=24% Similarity=0.353 Sum_probs=68.4
Q ss_pred cChHHHHHHHHHHHHH----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcC
Q 007952 133 VSGGERKRVCIGNEII----INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 208 (583)
Q Consensus 133 LSgGerqRv~ia~~L~----~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~ 208 (583)
||||||||+++|++++ .+|+++++|||+++||+..+..+.+.|++++++|.|+|+++|++. ..+.+|+++.+.+
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~--~~~~adrvi~i~~ 172 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKE--MFENADKLIGVLF 172 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH--HHhhCCeEEEEEE
Confidence 9999999999999996 699999999999999999999999999999877899999999964 4578999999965
No 404
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=1.2e-19 Score=190.73 Aligned_cols=186 Identities=23% Similarity=0.305 Sum_probs=143.9
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHHHH
Q 007952 8 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETL 87 (583)
Q Consensus 8 ~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~l 87 (583)
+++.+++..++.-.-.+++|+||+||||++|++.|.+. +..|.+.+++ |.+++|-.|...-+-.+.|-+-
T Consensus 378 ~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~--~~rgi~~~~~-------r~ri~~f~Qhhvd~l~~~v~~v- 447 (582)
T KOG0062|consen 378 QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLT--PTRGIVGRHP-------RLRIKYFAQHHVDFLDKNVNAV- 447 (582)
T ss_pred hhhhccCCccchhhhhheeccCchhHHHHHHHHhccCC--cccceeeecc-------cceecchhHhhhhHHHHHhHHH-
Confidence 67888888899889999999999999999999999654 4567766543 5679999998654444455443
Q ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 007952 88 TYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTT 167 (583)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~~ 167 (583)
.+....+. ..++ +..++-+..+||+.-. ....+.+||||||=||++|.....+|.+|+|||||+.||..+
T Consensus 448 d~~~~~~p--G~~~----ee~r~hl~~~Gl~g~l----a~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~ds 517 (582)
T KOG0062|consen 448 DFMEKSFP--GKTE----EEIRRHLGSFGLSGEL----ALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDS 517 (582)
T ss_pred HHHHHhCC--CCCH----HHHHHHHHhcCCCchh----hhccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHH
Confidence 33333332 2233 3456678999997421 123367899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEE-EcCh
Q 007952 168 ALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY-FGKA 217 (583)
Q Consensus 168 ~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~-~G~~ 217 (583)
-..+.+.|+.. +-.||++|||. +-+...|+.+.+.++|++.- .|..
T Consensus 518 l~AL~~Al~~F---~GGVv~VSHd~-~fi~~~c~E~Wvve~g~vt~ieg~~ 564 (582)
T KOG0062|consen 518 LGALAKALKNF---NGGVVLVSHDE-EFISSLCKELWVVEDGKVTPIEGGI 564 (582)
T ss_pred HHHHHHHHHhc---CCcEEEEECcH-HHHhhcCceeEEEcCCcEEeeeccH
Confidence 99999888876 34799999994 45778999999999999864 3443
No 405
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.80 E-value=6.8e-20 Score=181.20 Aligned_cols=154 Identities=21% Similarity=0.223 Sum_probs=117.0
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEE-EEccCCCCCCCCCH
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIG-FVTQDDVLFPHLTV 83 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~-yv~Q~~~~~~~lTv 83 (583)
+.+.+.+|++++.++|++++|.||||+|||||+++++- .. .-.++| |||.+...++
T Consensus 15 ~~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~-~~------------------~la~~g~~vpa~~~~~~---- 71 (222)
T cd03285 15 DVAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGV-IV------------------LMAQIGCFVPCDSADIP---- 71 (222)
T ss_pred CCCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHH-HH------------------HHHHhCCCcCcccEEEe----
Confidence 34578999999999999999999999999999999982 10 011222 5555432111
Q ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHH--HhCCCEEEEeCC--
Q 007952 84 KETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEI--IINPSLLFLDEP-- 159 (583)
Q Consensus 84 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L--~~~p~illLDEP-- 159 (583)
.++++++.+|+++.. .+++|.|+++++.+++++ +.+|++++||||
T Consensus 72 -----------------------~~~~il~~~~l~d~~--------~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~ 120 (222)
T cd03285 72 -----------------------IVDCILARVGASDSQ--------LKGVSTFMAEMLETAAILKSATENSLIIIDELGR 120 (222)
T ss_pred -----------------------ccceeEeeeccccch--------hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcC
Confidence 123455566665432 358999999999999999 899999999999
Q ss_pred -CCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcC
Q 007952 160 -TSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 216 (583)
Q Consensus 160 -tsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 216 (583)
|++||+.+.... .++.+.+ .|.++|++||+ .++.++||++..+++|++...++
T Consensus 121 gT~~lD~~~~~~~--il~~l~~~~~~~vlisTH~--~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 121 GTSTYDGFGLAWA--IAEYIATQIKCFCLFATHF--HELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred CCChHHHHHHHHH--HHHHHHhcCCCeEEEEech--HHHHHHhhcCCCeEEEEEEEEEe
Confidence 999999888543 3345544 48899999996 46789999999999999987764
No 406
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.80 E-value=3.2e-19 Score=182.71 Aligned_cols=186 Identities=26% Similarity=0.424 Sum_probs=140.4
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC------CCcccEEEECCccCCccccccEEEEccCC-CC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME------PTVGGSITYNDHPYSKSLKSKIGFVTQDD-VL 77 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~------~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~-~~ 77 (583)
.+..+|+|+|++++||++++|+|+|||||||||++|.|.... .|++|.|.+--.. ..+.+|.+. .-
T Consensus 394 ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt-------~~a~iPge~Ep~ 466 (593)
T COG2401 394 IERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNT-------VSALIPGEYEPE 466 (593)
T ss_pred eeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccc-------hhhccCcccccc
Confidence 356799999999999999999999999999999999995321 2456766542211 224455542 22
Q ss_pred CCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEe
Q 007952 78 FPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLD 157 (583)
Q Consensus 78 ~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLD 157 (583)
|..-|+.|.+.- .+. +-..+.++|+..|+.+.. .-....+.||-|||.|+.||..+...|.+++.|
T Consensus 467 f~~~tilehl~s-----~tG------D~~~AveILnraGlsDAv---lyRr~f~ELStGQKeR~KLAkllaerpn~~~iD 532 (593)
T COG2401 467 FGEVTILEHLRS-----KTG------DLNAAVEILNRAGLSDAV---LYRRKFSELSTGQKERAKLAKLLAERPNVLLID 532 (593)
T ss_pred cCchhHHHHHhh-----ccC------chhHHHHHHHhhccchhh---hhhccHhhcCcchHHHHHHHHHHhcCCCcEEhh
Confidence 445577776531 111 112356899999998532 222456799999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhh-cCeEEEEcCCeEE
Q 007952 158 EPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHK-FDKLILLGKGSLL 212 (583)
Q Consensus 158 EPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~-~D~v~~L~~G~iv 212 (583)
|--+.||..++..+.+-+.+++++ |.|.+++||+|.- +-.+ -|+++++.-|++.
T Consensus 533 EF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv-~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 533 EFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEV-GNALRPDTLILVGYGKVP 588 (593)
T ss_pred hhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHH-HhccCCceeEEeeccccc
Confidence 999999999999999999999865 9999999999753 3344 4899888766653
No 407
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.79 E-value=6.3e-19 Score=180.30 Aligned_cols=76 Identities=24% Similarity=0.378 Sum_probs=68.5
Q ss_pred cccChHHHHHHHHHHHHHh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEE
Q 007952 131 RGVSGGERKRVCIGNEIII----NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL 206 (583)
Q Consensus 131 ~~LSgGerqRv~ia~~L~~----~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L 206 (583)
..|||||+||+++|++++. +|+++++||||+|||+.+...+.+.|+++.+ +.|+|+++|+|. +.+.+|+++.|
T Consensus 169 ~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~-~~tii~isH~~~--~~~~~d~~~~l 245 (276)
T cd03241 169 KIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR-SHQVLCITHLPQ--VAAMADNHFLV 245 (276)
T ss_pred hhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEechHH--HHHhcCcEEEE
Confidence 3599999999999997664 9999999999999999999999999999864 789999999975 46899999999
Q ss_pred cCC
Q 007952 207 GKG 209 (583)
Q Consensus 207 ~~G 209 (583)
.+|
T Consensus 246 ~~~ 248 (276)
T cd03241 246 EKE 248 (276)
T ss_pred EEe
Confidence 876
No 408
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.78 E-value=3.1e-19 Score=187.37 Aligned_cols=174 Identities=24% Similarity=0.404 Sum_probs=127.3
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHH
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 85 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e 85 (583)
...+...++|.+++|--+.|.||||||||+|.|+|+|.- |...|...+ .....+-|+||.|.+- .-|.||
T Consensus 494 ~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLW--Pvy~g~L~~-------P~~~~mFYIPQRPYms-~gtlRD 563 (728)
T KOG0064|consen 494 GDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLW--PVYNGLLSI-------PRPNNIFYIPQRPYMS-GGTLRD 563 (728)
T ss_pred cceeecceeEEecCCceEEEECCCCccHHHHHHHHhccC--cccCCeeec-------CCCcceEeccCCCccC-cCcccc
Confidence 345789999999999999999999999999999999965 333443321 1234599999998765 346777
Q ss_pred HHHHHHH---cCCCCCCCHHHHHHHHHHHHHHcCCCcccccccc----CccCcccChHHHHHHHHHHHHHhCCCEEEEeC
Q 007952 86 TLTYAAL---LRLPNTLTKQQKEKRAIDVINELGLERCQDTMIG----GSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 158 (583)
Q Consensus 86 ~l~~~~~---~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig----~~~~~~LSgGerqRv~ia~~L~~~p~illLDE 158 (583)
.+-|.-. ++ .+..+. +..+.+|+.+.|++....-.| .....-||||||||+.+||.+-++|+.-+|||
T Consensus 564 QIIYPdS~e~~~-~kg~~d----~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDE 638 (728)
T KOG0064|consen 564 QIIYPDSSEQMK-RKGYTD----QDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDE 638 (728)
T ss_pred eeecCCcHHHHH-hcCCCH----HHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhh
Confidence 6655311 00 011222 235566677766654433222 11234699999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhh
Q 007952 159 PTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHK 199 (583)
Q Consensus 159 PtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~ 199 (583)
.||+..+.....+.+..++ .|.+.|-++|+|+. +++
T Consensus 639 cTsAvsidvE~~i~~~ak~---~gi~llsithrpsl--wk~ 674 (728)
T KOG0064|consen 639 CTSAVSIDVEGKIFQAAKD---AGISLLSITHRPSL--WKY 674 (728)
T ss_pred hhcccccchHHHHHHHHHh---cCceEEEeecCccH--HHH
Confidence 9999999988888887765 49999999999974 554
No 409
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.78 E-value=1.4e-18 Score=163.57 Aligned_cols=75 Identities=28% Similarity=0.413 Sum_probs=67.9
Q ss_pred ccChHHHHHHHHHHHHHh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEc
Q 007952 132 GVSGGERKRVCIGNEIII----NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG 207 (583)
Q Consensus 132 ~LSgGerqRv~ia~~L~~----~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~ 207 (583)
++|+||+||+++|++|.. +|+++++|||++|+|+.....+.+.+.++.++|.++|++||++. +.+.+|+++.|+
T Consensus 77 ~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~--~~~~~d~~~~l~ 154 (162)
T cd03227 77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPE--LAELADKLIHIK 154 (162)
T ss_pred eccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHH--HHHhhhhEEEEE
Confidence 499999999999999997 78999999999999999999999999998766889999999964 467799999986
Q ss_pred C
Q 007952 208 K 208 (583)
Q Consensus 208 ~ 208 (583)
.
T Consensus 155 ~ 155 (162)
T cd03227 155 K 155 (162)
T ss_pred E
Confidence 4
No 410
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.75 E-value=7e-18 Score=195.66 Aligned_cols=136 Identities=23% Similarity=0.396 Sum_probs=109.4
Q ss_pred CCCCHHHHHHHHHHcCCCCC-CC-----HHHHHHHHHHHHHHcCCCcc-ccccccCccCcccChHHHHHHHHHHHHHhCC
Q 007952 79 PHLTVKETLTYAALLRLPNT-LT-----KQQKEKRAIDVINELGLERC-QDTMIGGSFVRGVSGGERKRVCIGNEIIINP 151 (583)
Q Consensus 79 ~~lTv~e~l~~~~~~~~~~~-~~-----~~~~~~~v~~~l~~lgL~~~-~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p 151 (583)
..+||.|.+.|.-.+..+.. .. .++..++++ .++.+||.+. .|+ .+.+|||||||||.||++|..+|
T Consensus 435 ~~~~v~~~~~~~~~~~~~~~~~~~a~~~~~~i~~rl~-~L~~vGL~~l~l~r-----~~~~LSgGE~QRv~LA~aL~~~~ 508 (943)
T PRK00349 435 SELSIGEALEFFENLKLSEQEAKIAEPILKEIRERLK-FLVDVGLDYLTLSR-----SAGTLSGGEAQRIRLATQIGSGL 508 (943)
T ss_pred hcCcHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH-HhhccccCCCCCCC-----chhhCCHHHHHHHHHHHHHhhCC
Confidence 36899999998544432210 00 013334453 6888888754 454 46799999999999999999997
Q ss_pred --CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEE------cCCeEEEEcChhhHHH
Q 007952 152 --SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL------GKGSLLYFGKASEAMA 222 (583)
Q Consensus 152 --~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~~ 222 (583)
++++|||||+|||+..+..+++.|++++++|.|||+++|++. ++ ..||+|++| ++|++++.|+++++..
T Consensus 509 ~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~-~i-~~aD~vi~LgpgaG~~~G~iv~~g~~~e~~~ 585 (943)
T PRK00349 509 TGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDED-TI-RAADYIVDIGPGAGVHGGEVVASGTPEEIMK 585 (943)
T ss_pred CCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEeccccCCCCCEEeeccCHHHHhc
Confidence 999999999999999999999999999888999999999975 35 469999999 8999999999988743
No 411
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.74 E-value=1.3e-17 Score=193.02 Aligned_cols=134 Identities=24% Similarity=0.401 Sum_probs=106.3
Q ss_pred CCCHHHHHHHHHHcCCCCCCCH------HHHHHHHHHHHHHcCCCcc-ccccccCccCcccChHHHHHHHHHHHHHhCC-
Q 007952 80 HLTVKETLTYAALLRLPNTLTK------QQKEKRAIDVINELGLERC-QDTMIGGSFVRGVSGGERKRVCIGNEIIINP- 151 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~~~~~~------~~~~~~v~~~l~~lgL~~~-~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p- 151 (583)
.|||.|.+.|...+..+..... ++..+++ +.+..+||... .+ +.+.+|||||+||+.||++|..+|
T Consensus 434 ~~~v~~~~~~~~~l~~~~~~~~ia~~i~~~i~~rl-~~L~~vgL~~l~l~-----r~~~tLSGGE~QRv~LA~aL~~~~~ 507 (924)
T TIGR00630 434 ELSIREAHEFFNQLDLTPEEKKIAEEILKEIKERL-GFLIDVGLDYLTLS-----RAAGTLSGGEAQRIRLATQIGSGLT 507 (924)
T ss_pred cCCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HhHhhccccccccC-----CCcCcCCHHHHHHHHHHHHHhhCCC
Confidence 6899999988765432211000 1122222 23677788643 33 356799999999999999999986
Q ss_pred -CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEE------cCCeEEEEcChhhHH
Q 007952 152 -SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL------GKGSLLYFGKASEAM 221 (583)
Q Consensus 152 -~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~ 221 (583)
++++|||||+|||+.+...+++.|++++++|.|||+++|++. .+ ..||++++| ++|++++.|+++++.
T Consensus 508 ~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~-~i-~~aD~vi~LgpgaG~~~G~Iv~~g~~~el~ 582 (924)
T TIGR00630 508 GVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEE-TI-RAADYVIDIGPGAGIHGGEVVASGTPEEIL 582 (924)
T ss_pred CcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HH-hhCCEEEEecccccCCCCEEeeccCHHHHh
Confidence 899999999999999999999999999988999999999964 34 589999999 899999999998864
No 412
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.74 E-value=4.1e-17 Score=166.39 Aligned_cols=77 Identities=14% Similarity=0.222 Sum_probs=62.6
Q ss_pred CcccChHHHHHHHHHHHHH---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhc
Q 007952 130 VRGVSGGERKRVCIGNEII---------INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKF 200 (583)
Q Consensus 130 ~~~LSgGerqRv~ia~~L~---------~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~ 200 (583)
..-+|+||||++++|++|+ .+|+++++||||++||+..+..+.+.++++. .+ ++++|+.. .+.+.|
T Consensus 181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~---q~-ii~~~~~~-~~~~~~ 255 (270)
T cd03242 181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV---QT-FVTTTDLA-DFDALW 255 (270)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC---CE-EEEeCCch-hccchh
Confidence 4568999999999999985 6999999999999999999999999998753 34 45555433 355666
Q ss_pred ---CeEEEEcCCeE
Q 007952 201 ---DKLILLGKGSL 211 (583)
Q Consensus 201 ---D~v~~L~~G~i 211 (583)
++++.+++|++
T Consensus 256 ~~~~~i~~l~~g~i 269 (270)
T cd03242 256 LRRAQIFRVDAGTL 269 (270)
T ss_pred ccCccEEEEeCcEE
Confidence 68999999985
No 413
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.73 E-value=2.9e-18 Score=167.35 Aligned_cols=156 Identities=15% Similarity=0.144 Sum_probs=105.7
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHHHHHHHH
Q 007952 12 GITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAA 91 (583)
Q Consensus 12 ~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~l~~~~ 91 (583)
..++++.+|++++|+|||||||||||++|++.... ...|.. .. ..+..++|..|. +..++..++
T Consensus 21 ~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~-~~~g~~------~~-~~~~~i~~~dqi---~~~~~~~d~----- 84 (202)
T cd03243 21 PNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLL-AQIGCF------VP-AESASIPLVDRI---FTRIGAEDS----- 84 (202)
T ss_pred eeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHH-HHcCCC------cc-ccccccCCcCEE---EEEecCccc-----
Confidence 34666778999999999999999999999953210 111210 00 011223333221 111111110
Q ss_pred HcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHH
Q 007952 92 LLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRI 171 (583)
Q Consensus 92 ~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~~~~~i 171 (583)
... ....++++++ |++.+.+++.+|+++++||||+|+|+.....+
T Consensus 85 -----------------------------i~~-----~~s~~~~e~~-~l~~i~~~~~~~~llllDEp~~gld~~~~~~l 129 (202)
T cd03243 85 -----------------------------ISD-----GRSTFMAELL-ELKEILSLATPRSLVLIDELGRGTSTAEGLAI 129 (202)
T ss_pred -----------------------------ccC-----CceeHHHHHH-HHHHHHHhccCCeEEEEecCCCCCCHHHHHHH
Confidence 011 1235666665 47777788899999999999999999988887
Q ss_pred HH-HHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhH
Q 007952 172 VQ-MLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 220 (583)
Q Consensus 172 ~~-~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 220 (583)
.. .++.+.+.+.++|++||++ ++.+.+|++..++.|++...++.++.
T Consensus 130 ~~~ll~~l~~~~~~vi~~tH~~--~~~~~~~~~~~l~~~~~~~~~~~~~~ 177 (202)
T cd03243 130 AYAVLEHLLEKGCRTLFATHFH--ELADLPEQVPGVKNLHMEELITTGGL 177 (202)
T ss_pred HHHHHHHHHhcCCeEEEECChH--HHHHHhhcCCCeEEEEEEEEecCCee
Confidence 65 5677777789999999985 46778999999999999988876443
No 414
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.68 E-value=6.7e-17 Score=157.67 Aligned_cols=137 Identities=20% Similarity=0.227 Sum_probs=99.3
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccE-EEEccCCCCCCCCCH
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKI-GFVTQDDVLFPHLTV 83 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i-~yv~Q~~~~~~~lTv 83 (583)
.++.+.+|+++++++|++++|+||||+|||||++++++... ..++ .+| +...+.+++
T Consensus 14 ~~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~-------------------la~~G~~v---pa~~~~l~~ 71 (204)
T cd03282 14 KKNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAI-------------------MAQIGCFV---PAEYATLPI 71 (204)
T ss_pred CCcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHH-------------------HHHcCCCc---chhhcCccC
Confidence 45689999999999999999999999999999999997421 0111 133 233445566
Q ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCC
Q 007952 84 KETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGL 163 (583)
Q Consensus 84 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgL 163 (583)
.|++.. .++..+..+. ....+|+|++|+ +.+.+++.+|+++++|||++|+
T Consensus 72 ~d~I~~------------------------~~~~~d~~~~-----~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt 121 (204)
T cd03282 72 FNRLLS------------------------RLSNDDSMER-----NLSTFASEMSET-AYILDYADGDSLVLIDELGRGT 121 (204)
T ss_pred hhheeE------------------------ecCCccccch-----hhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCC
Confidence 666532 1222211111 235799999965 5666788999999999999999
Q ss_pred CHHHHHHH-HHHHHHHHHCCcEEEEEecCCC
Q 007952 164 DSTTALRI-VQMLQDIAEAGKTVVTTIHQPS 193 (583)
Q Consensus 164 D~~~~~~i-~~~l~~l~~~g~tii~~~H~~~ 193 (583)
|+.....+ ...++.+.+.|.++|++||+..
T Consensus 122 ~~~~~~~l~~~il~~l~~~~~~~i~~TH~~~ 152 (204)
T cd03282 122 SSADGFAISLAILECLIKKESTVFFATHFRD 152 (204)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEECChHH
Confidence 99776665 4567778878999999999853
No 415
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=1.2e-17 Score=171.63 Aligned_cols=203 Identities=26% Similarity=0.352 Sum_probs=141.0
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCC-----------ccccccEEEEcc
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-----------KSLKSKIGFVTQ 73 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~-----------~~~~~~i~yv~Q 73 (583)
..+.++.|.|+.|-.|..++++||||-||||||+-|+.|-..-|..=+|++..+.+. +.-.++...+..
T Consensus 275 ~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tvl~aD~kRl~lLee 354 (807)
T KOG0066|consen 275 QGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTVLKADKKRLALLEE 354 (807)
T ss_pred ccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHHHHhhHHHHHHHHH
Confidence 457788999999999999999999999999999999986432121223444333221 000111111111
Q ss_pred CCC-----CCCCCCHHHHHHHH-HHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHH
Q 007952 74 DDV-----LFPHLTVKETLTYA-ALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEI 147 (583)
Q Consensus 74 ~~~-----~~~~lTv~e~l~~~-~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L 147 (583)
++. --...|+.|-+.-. ..+|. +.....+.++..+|.-||.+.... +++...+|||=|-||++||||
T Consensus 355 e~~L~~q~e~Gd~taaErl~~v~~ELra---iGA~sAEarARRILAGLGFskEMQ----~rPt~kFSGGWRMRvSLARAL 427 (807)
T KOG0066|consen 355 EAKLMSQIEEGDTTAAERLKEVADELRA---IGADSAEARARRILAGLGFSKEMQ----ERPTTKFSGGWRMRVSLARAL 427 (807)
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHHHH---hccccchhHHHHHHhhcCCChhHh----cCCccccCCceeeehhHHHHH
Confidence 111 11345666665422 22332 112233456778888888875332 234568999999999999999
Q ss_pred HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEE-EEcChh
Q 007952 148 IINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL-YFGKAS 218 (583)
Q Consensus 148 ~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv-~~G~~~ 218 (583)
..+|-+|.|||||+.||..+..-+-..|..+. +|.++++||-. -+-..|..|+-|++.++. |.|...
T Consensus 428 flEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk---KTLLIVSHDQg-FLD~VCtdIIHLD~qkLhyYrGNY~ 495 (807)
T KOG0066|consen 428 FLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK---KTLLIVSHDQG-FLDSVCTDIIHLDNQKLHYYRGNYT 495 (807)
T ss_pred hcCceeeeecCCccccccceeeehhhHHhhhh---heeEEEecccc-hHHHHHHHHhhhhhhhhhhhcchHH
Confidence 99999999999999999999988888888875 49999999965 467889999999988764 456543
No 416
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.65 E-value=4.9e-16 Score=153.11 Aligned_cols=158 Identities=20% Similarity=0.169 Sum_probs=107.7
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHH
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 85 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e 85 (583)
++.+.+|++++.++ ++++|.||||||||||||++++.... |. .|..+.. .+..++++.| +++.+++.|
T Consensus 17 ~~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l----~~---~g~~vp~-~~~~i~~~~~---i~~~~~~~~ 84 (216)
T cd03284 17 EPFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALL----AQ---IGSFVPA-SKAEIGVVDR---IFTRIGASD 84 (216)
T ss_pred CceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHH----hc---cCCeecc-ccceecceee---EeccCCchh
Confidence 45689999999987 99999999999999999999873211 11 1222211 1345777755 566677766
Q ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCh--HHHHHHHHHHHHHhCCCEEEEeCC---C
Q 007952 86 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG--GERKRVCIGNEIIINPSLLFLDEP---T 160 (583)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSg--GerqRv~ia~~L~~~p~illLDEP---t 160 (583)
++..+ .|. .|+++++-+...+.+|++++|||| |
T Consensus 85 ~ls~g------------------------------------------~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt 122 (216)
T cd03284 85 DLAGG------------------------------------------RSTFMVEMVETANILNNATERSLVLLDEIGRGT 122 (216)
T ss_pred hhccC------------------------------------------cchHHHHHHHHHHHHHhCCCCeEEEEecCCCCC
Confidence 65432 111 122233333333579999999999 8
Q ss_pred CCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 161 SGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 161 sgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
+++|.... ....++.+.+. +.++|++||+. ++.+++|++.-+.+|++...+..+++.
T Consensus 123 ~~lD~~~~--~~~il~~l~~~~~~~vi~~TH~~--~l~~l~~~~~~v~~~~~~~~~~~~~l~ 180 (216)
T cd03284 123 STYDGLSI--AWAIVEYLHEKIGAKTLFATHYH--ELTELEGKLPRVKNFHVAVKEKGGGVV 180 (216)
T ss_pred ChHHHHHH--HHHHHHHHHhccCCcEEEEeCcH--HHHHHhhcCCCeEEEEEEEEeeCCeEE
Confidence 88887552 23445555555 88999999994 577888988778889988877766654
No 417
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.61 E-value=1.7e-15 Score=153.39 Aligned_cols=139 Identities=21% Similarity=0.258 Sum_probs=95.4
Q ss_pred eEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCC-----ccccccEEEEccCCCCCCCCCHHHHHHHHHHcCC
Q 007952 21 EVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-----KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRL 95 (583)
Q Consensus 21 e~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~-----~~~~~~i~yv~Q~~~~~~~lTv~e~l~~~~~~~~ 95 (583)
+-++|+||||||||||+++|+|.+. +.+|+|.++|+++. ++..+.+++++|++. .+.++|.|+..
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~--~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~-~~r~~v~~~~~------- 181 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILS--TGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDV-GIRTDVLDGCP------- 181 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccC--CCCceEEECCEEeecchhHHHHHHHhcccccccc-cccccccccch-------
Confidence 5789999999999999999999764 56899999998874 133445678888653 34455544310
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 007952 96 PNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQML 175 (583)
Q Consensus 96 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l 175 (583)
+ ..| ........+|+++++|||++ ...+...+
T Consensus 182 -----k--------------------------------~~~-----~~~~i~~~~P~villDE~~~------~e~~~~l~ 213 (270)
T TIGR02858 182 -----K--------------------------------AEG-----MMMLIRSMSPDVIVVDEIGR------EEDVEALL 213 (270)
T ss_pred -----H--------------------------------HHH-----HHHHHHhCCCCEEEEeCCCc------HHHHHHHH
Confidence 0 001 12223336999999999974 33455555
Q ss_pred HHHHHCCcEEEEEecCCChH-H-----------HhhcCeEEEEcCCeEEEEcChhhH
Q 007952 176 QDIAEAGKTVVTTIHQPSSR-L-----------FHKFDKLILLGKGSLLYFGKASEA 220 (583)
Q Consensus 176 ~~l~~~g~tii~~~H~~~~~-i-----------~~~~D~v~~L~~G~iv~~G~~~~~ 220 (583)
+.+ ++|+++|+++|++..+ + ...|||+++|++|+ ..|++++.
T Consensus 214 ~~~-~~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i 267 (270)
T TIGR02858 214 EAL-HAGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAV 267 (270)
T ss_pred HHH-hCCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceeec
Confidence 554 4699999999986432 2 25689999999886 55665543
No 418
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.61 E-value=3.4e-15 Score=153.89 Aligned_cols=179 Identities=26% Similarity=0.374 Sum_probs=135.1
Q ss_pred ccccceeeceEEEEeCC-----eEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCC
Q 007952 4 SEEKDILNGITGSVNPG-----EVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLF 78 (583)
Q Consensus 4 ~~~~~iL~~vs~~i~~G-----e~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~ 78 (583)
.+.+.-+.+..+.|+.| |++..+|+||.||||++++++|++. |...|+|-. -.++|=||.-.-=
T Consensus 346 p~m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~-pd~~~e~p~----------lnVSykpqkispK 414 (592)
T KOG0063|consen 346 PKMKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLK-PDEGGEIPV----------LNVSYKPQKISPK 414 (592)
T ss_pred CcceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCC-CCccCcccc----------cceeccccccCcc
Confidence 34556677888888877 5789999999999999999999764 334444422 2477888875544
Q ss_pred CCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeC
Q 007952 79 PHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 158 (583)
Q Consensus 79 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDE 158 (583)
..-||++.+.--.+ +.-.....+.++++-|.+++..|. .+.+|||||+||+++|..|-..+++++.||
T Consensus 415 ~~~tvR~ll~~kIr-------~ay~~pqF~~dvmkpL~ie~i~dq-----evq~lSggelQRval~KOGGKpAdvYliDE 482 (592)
T KOG0063|consen 415 REGTVRQLLHTKIR-------DAYMHPQFVNDVMKPLQIENIIDQ-----EVQGLSGGELQRVALALCLGKPADVYLIDE 482 (592)
T ss_pred ccchHHHHHHHHhH-------hhhcCHHHHHhhhhhhhHHHHHhH-----HhhcCCchhhHHHHHHHhcCCCCceEEecC
Confidence 45689987753211 011123457788888888877665 467999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHH-HCCcEEEEEecCCChHHHhhcCeEEEE
Q 007952 159 PTSGLDSTTALRIVQMLQDIA-EAGKTVVTTIHQPSSRLFHKFDKLILL 206 (583)
Q Consensus 159 PtsgLD~~~~~~i~~~l~~l~-~~g~tii~~~H~~~~~i~~~~D~v~~L 206 (583)
|.+=||++.+..--+.+++.- +.++|-.++.||...+. -++||+++.
T Consensus 483 psAylDSeQRi~AskvikRfilhakktafvVEhdfImaT-Yladrvivf 530 (592)
T KOG0063|consen 483 PSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMAT-YLADRVIVF 530 (592)
T ss_pred chhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHH-hhcceeEEE
Confidence 999999999999999998864 55889999999964432 357887655
No 419
>PRK00064 recF recombination protein F; Reviewed
Probab=99.54 E-value=3.2e-13 Score=143.28 Aligned_cols=78 Identities=21% Similarity=0.305 Sum_probs=65.5
Q ss_pred CcccChHHHHHHHHHHHHH---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhc
Q 007952 130 VRGVSGGERKRVCIGNEII---------INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKF 200 (583)
Q Consensus 130 ~~~LSgGerqRv~ia~~L~---------~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~ 200 (583)
...+|.||+|++.+|+.|+ .+|++++||||+++||+..+..+++.+.++ +..+++|+|++. .+...+
T Consensus 271 ~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~---~~qv~it~~~~~-~~~~~~ 346 (361)
T PRK00064 271 ADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL---GAQVFITTTDLE-DLADLL 346 (361)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc---CCEEEEEcCChh-hhhhhh
Confidence 4679999999999999886 699999999999999999999999998764 457888988854 344443
Q ss_pred --CeEEEEcCCeE
Q 007952 201 --DKLILLGKGSL 211 (583)
Q Consensus 201 --D~v~~L~~G~i 211 (583)
+++..+++|++
T Consensus 347 ~~~~i~~v~~G~i 359 (361)
T PRK00064 347 ENAKIFHVEQGKI 359 (361)
T ss_pred ccCcEEEEeCCEE
Confidence 47899999986
No 420
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.52 E-value=5.6e-15 Score=142.23 Aligned_cols=81 Identities=17% Similarity=0.121 Sum_probs=58.0
Q ss_pred CcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEc
Q 007952 130 VRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIV-QMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLG 207 (583)
Q Consensus 130 ~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~~~~~i~-~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~ 207 (583)
...+|+|++|...+.. .+.+|+++++|||++|+|+.....+. ..++.+.++ +.++|++||++ ++.+.+|+---++
T Consensus 59 ~s~fs~~~~~l~~~l~-~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~--~l~~~~~~~~~v~ 135 (185)
T smart00534 59 LSTFMVEMKETANILK-NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYH--ELTKLADEHPGVR 135 (185)
T ss_pred ccHHHHHHHHHHHHHH-hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHHHhhcCccce
Confidence 3578888776433332 23599999999999999999887765 556777774 89999999996 4677787533334
Q ss_pred CCeEEE
Q 007952 208 KGSLLY 213 (583)
Q Consensus 208 ~G~iv~ 213 (583)
+++...
T Consensus 136 ~~~~~~ 141 (185)
T smart00534 136 NLHMSA 141 (185)
T ss_pred EEEEEE
Confidence 444433
No 421
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.49 E-value=2.3e-13 Score=134.49 Aligned_cols=88 Identities=27% Similarity=0.480 Sum_probs=65.0
Q ss_pred HHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHH----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC
Q 007952 106 KRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEII----INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA 181 (583)
Q Consensus 106 ~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~----~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~ 181 (583)
+.+.+.++..++.. ..+|||||.+++||.-|+ .+.++++||||.++||...+..+.++|+++.+
T Consensus 121 ~~~~~~l~~~~i~~-----------~~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~- 188 (220)
T PF02463_consen 121 KDLEELLPEVGISP-----------EFLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSK- 188 (220)
T ss_dssp HHHHHHHHCTTTTT-----------TGS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTT-
T ss_pred cccccccccccccc-----------cccccccccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 34555666655542 279999999999997764 46789999999999999999999999999875
Q ss_pred CcEEEEEecCCChHHHhhcCeEEEEc
Q 007952 182 GKTVVTTIHQPSSRLFHKFDKLILLG 207 (583)
Q Consensus 182 g~tii~~~H~~~~~i~~~~D~v~~L~ 207 (583)
+.-+|++||++ .+++.+|+.+-+.
T Consensus 189 ~~Q~ii~Th~~--~~~~~a~~~~~v~ 212 (220)
T PF02463_consen 189 QSQFIITTHNP--EMFEDADKLIGVT 212 (220)
T ss_dssp TSEEEEE-S-H--HHHTT-SEEEEEE
T ss_pred ccccccccccc--ccccccccccccc
Confidence 46789999985 4788899887663
No 422
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.46 E-value=9e-14 Score=159.67 Aligned_cols=137 Identities=21% Similarity=0.278 Sum_probs=94.7
Q ss_pred ccceeec-----eEEEEeCC-eEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCC-CC
Q 007952 6 EKDILNG-----ITGSVNPG-EVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDV-LF 78 (583)
Q Consensus 6 ~~~iL~~-----vs~~i~~G-e~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~-~~ 78 (583)
.++++++ +|+.+.+| ++++|.||||+|||||||+|+|.... +..| .+||.... .+
T Consensus 302 rhPll~~~~~vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~-aq~G-----------------~~Vpa~~~~~~ 363 (771)
T TIGR01069 302 RHPLLKEPKVVPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALM-FQSG-----------------IPIPANEHSEI 363 (771)
T ss_pred cCceecCCceEeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHH-HHhC-----------------CCccCCccccc
Confidence 3456654 78889888 89999999999999999999985211 1122 13333321 11
Q ss_pred CCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeC
Q 007952 79 PHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 158 (583)
Q Consensus 79 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDE 158 (583)
+ +.+.+. . + +..+ + .+. .....+|+|+++++.|++.+ .+|+++++||
T Consensus 364 ~---~~d~i~--~--~----i~~~---~---si~---------------~~LStfS~~m~~~~~il~~~-~~~sLvLlDE 410 (771)
T TIGR01069 364 P---YFEEIF--A--D----IGDE---Q---SIE---------------QNLSTFSGHMKNISAILSKT-TENSLVLFDE 410 (771)
T ss_pred c---chhhee--e--e----cChH---h---HHh---------------hhhhHHHHHHHHHHHHHHhc-CCCcEEEecC
Confidence 1 111110 0 0 0000 0 011 01357999999999998876 8999999999
Q ss_pred CCCCCCHHHHHHH-HHHHHHHHHCCcEEEEEecCCC
Q 007952 159 PTSGLDSTTALRI-VQMLQDIAEAGKTVVTTIHQPS 193 (583)
Q Consensus 159 PtsgLD~~~~~~i-~~~l~~l~~~g~tii~~~H~~~ 193 (583)
|++|+|+.....+ ..+++.+++.|.++|++||+..
T Consensus 411 ~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~e 446 (771)
T TIGR01069 411 LGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKE 446 (771)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHH
Confidence 9999999999988 5788888888999999999964
No 423
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.45 E-value=7.1e-13 Score=130.41 Aligned_cols=126 Identities=20% Similarity=0.287 Sum_probs=84.6
Q ss_pred EEEEeCC--eEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCC-CCCHHHHHHHH
Q 007952 14 TGSVNPG--EVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFP-HLTVKETLTYA 90 (583)
Q Consensus 14 s~~i~~G--e~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~-~lTv~e~l~~~ 90 (583)
++.+.++ ..++|.||||+|||||||.++....- ...|...... .-.++|..|....+. ..++.+
T Consensus 21 d~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~-------~~~~~~~d~i~~~l~~~~si~~----- 87 (213)
T cd03281 21 DTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPAD-------SATIGLVDKIFTRMSSRESVSS----- 87 (213)
T ss_pred eEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcC-------CcEEeeeeeeeeeeCCccChhh-----
Confidence 4445554 79999999999999999999842110 1234432211 234677777432111 111111
Q ss_pred HHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccC--hHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHH
Q 007952 91 ALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS--GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTA 168 (583)
Q Consensus 91 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LS--gGerqRv~ia~~L~~~p~illLDEPtsgLD~~~~ 168 (583)
++| .-|-||++++++++.+|+++++|||++|+|+...
T Consensus 88 -----------------------------------------~~S~f~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~ 126 (213)
T cd03281 88 -----------------------------------------GQSAFMIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDG 126 (213)
T ss_pred -----------------------------------------ccchHHHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHH
Confidence 122 3467899999999999999999999999999765
Q ss_pred HHH-HHHHHHHHHC---CcEEEEEecCCC
Q 007952 169 LRI-VQMLQDIAEA---GKTVVTTIHQPS 193 (583)
Q Consensus 169 ~~i-~~~l~~l~~~---g~tii~~~H~~~ 193 (583)
..+ ...++++.++ +.++|++||++.
T Consensus 127 ~~~~~ail~~l~~~~~~~~~vli~TH~~~ 155 (213)
T cd03281 127 AGLLIATIEHLLKRGPECPRVIVSTHFHE 155 (213)
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEEcChHH
Confidence 555 5688888764 248999999964
No 424
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.45 E-value=1e-13 Score=120.13 Aligned_cols=73 Identities=19% Similarity=0.120 Sum_probs=60.9
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~lT 82 (583)
+.+|+++++++++||+++|+||||||||||++++. +|++.++|.++.. ..++.++|++|+ +++ .|
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~--------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~-~t 70 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI--------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLE-IR 70 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh--------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cch-hh
Confidence 57899999999999999999999999999999986 5889999987642 345567788777 443 49
Q ss_pred HHHHHHHH
Q 007952 83 VKETLTYA 90 (583)
Q Consensus 83 v~e~l~~~ 90 (583)
++|||.++
T Consensus 71 i~~Ni~~~ 78 (107)
T cd00820 71 LRLNIFLI 78 (107)
T ss_pred HHhhceee
Confidence 99999873
No 425
>TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein. This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.38 E-value=1e-10 Score=116.77 Aligned_cols=145 Identities=14% Similarity=0.166 Sum_probs=115.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007952 419 RLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQGLGLAIGAILMDLKKATTLASVTI 498 (583)
Q Consensus 419 ~~~ay~la~~l~~lP~~~~~~~~~~~i~Y~~~gl~~~~~~f~~~~~~~~l~~~~~~~~g~~i~~~~~~~~~A~~~~~~~~ 498 (583)
++..|+++|.+.+++..++..+++..+.+++.+++. ..++..++..++..++..++|.++++..+|.+.+..+.+++.
T Consensus 88 ~~~~~~l~~~l~~~~~~~~~~~i~~~i~~~~~~~~~--~~~~~~~~~~~l~~~~~~~lg~~l~~~~~~~~~~~~i~~~~~ 165 (236)
T TIGR01247 88 SRVEMIVGRILGGSTVAMIQGAIILALSFIVAILKP--SGVIPTLVLAFIVGVALSGLGVAIAARMDSMEGFQIIMSMLM 165 (236)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 678999999999999999999998888888777553 344444555566677889999999999999999888888888
Q ss_pred HHHHHHhhcccC--CCccchhhhhccCHHHHHHHHHHHHHcCCCCCCCCCcccCcchhhHHHHHHHHHHHHHHHHH
Q 007952 499 MTFMLAGGYFVQ--EVPVFISWIRYMSFNFHTYKILLKIQYADISPIVNGMRTDSGFREVCALVAMVFGYRLLAYL 572 (583)
Q Consensus 499 ~~~~l~~Gf~i~--~ip~~~~Wl~yis~~~ya~~~l~~~ef~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~l~~~ 572 (583)
.++.+++|.+.| .+|+|++|+.+++|.+|+.|++-..-.++ ......+.++++|+.+.+++.+++-.
T Consensus 166 ~~l~~lsG~~~P~~~~P~~~~~i~~~~P~~~~~~~~r~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~l~~~ 234 (236)
T TIGR01247 166 LPMFFLSGAFYPITTMPAWMQGLAKINPLTYAVDGARYYLAGV-------SPTFPLEQDLLVLTLLAVIFVGIAAV 234 (236)
T ss_pred HHHHHHHHhhcCHHhCHHHHHHHHHHCcHHHHHHHHHHHHhCC-------CcccchHHHHHHHHHHHHHHHHHHHH
Confidence 899999999998 79999999999999999999965443221 11233445788888888887776643
No 426
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.36 E-value=5e-12 Score=124.84 Aligned_cols=135 Identities=19% Similarity=0.210 Sum_probs=87.0
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHH
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 85 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e 85 (583)
++.+.+|+++.+++|++++|.||||+||||+++++++... .+..|...... . -.++|..|= +-.+...|
T Consensus 17 ~~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~-la~~G~~v~a~-~------~~~~~~~~i---~~~~~~~d 85 (222)
T cd03287 17 KSFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITI-MAQIGSFVPAS-S------ATLSIFDSV---LTRMGASD 85 (222)
T ss_pred CCEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHH-HHhCCCEEEcC-c------eEEeccceE---EEEecCcc
Confidence 4678899999999999999999999999999999998322 13445533221 1 112332221 11100111
Q ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccC--hHHHHHHHHHHHHHhCCCEEEEeCCCCCC
Q 007952 86 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS--GGERKRVCIGNEIIINPSLLFLDEPTSGL 163 (583)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LS--gGerqRv~ia~~L~~~p~illLDEPtsgL 163 (583)
++. .++| ..|-+|++-...-+.+|+++++|||.+|.
T Consensus 86 ~~~------------------------------------------~~~StF~~e~~~~~~il~~~~~~sLvllDE~~~gT 123 (222)
T cd03287 86 SIQ------------------------------------------HGMSTFMVELSETSHILSNCTSRSLVILDELGRGT 123 (222)
T ss_pred ccc------------------------------------------cccchHHHHHHHHHHHHHhCCCCeEEEEccCCCCC
Confidence 100 0111 22334444444445689999999999999
Q ss_pred CHHHHHHH-HHHHHHHHHC-CcEEEEEecCCC
Q 007952 164 DSTTALRI-VQMLQDIAEA-GKTVVTTIHQPS 193 (583)
Q Consensus 164 D~~~~~~i-~~~l~~l~~~-g~tii~~~H~~~ 193 (583)
|+.....+ ...++.+.+. +.++|++||++.
T Consensus 124 ~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~ 155 (222)
T cd03287 124 STHDGIAIAYATLHYLLEEKKCLVLFVTHYPS 155 (222)
T ss_pred ChhhHHHHHHHHHHHHHhccCCeEEEEcccHH
Confidence 87777664 5677777776 889999999964
No 427
>TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain. This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=99.36 E-value=2.7e-11 Score=118.61 Aligned_cols=148 Identities=14% Similarity=0.101 Sum_probs=119.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007952 419 RLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQGLGLAIGAILMDLKKATTLASVTI 498 (583)
Q Consensus 419 ~~~ay~la~~l~~lP~~~~~~~~~~~i~Y~~~gl~~~~~~f~~~~~~~~l~~~~~~~~g~~i~~~~~~~~~A~~~~~~~~ 498 (583)
+...++++|.+..++..+++++++..+.|++.|++.+ +++.+++.+++..++..++|.++++.+++...+. +.+.+
T Consensus 58 ~~~~~~~~k~~~~~~~~~~~~~~~~~i~~~~~g~~~~--~~~~~~l~~~l~~~~~~~lg~~l~~~~~~~~~~~--~~~~~ 133 (208)
T TIGR03062 58 RSWRIALAKLLPGGLIGVLQAIILYGVLILGLGLDPA--HPPATFGFAILTSLTFMAIIQFLVALFGNVGRFL--ALVLL 133 (208)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccC--CHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHH--HHHHH
Confidence 4567799999999999999999999999999999864 4666677778888999999999999998765543 33444
Q ss_pred HHHHHHhhcccC--CCccchhhhhccCHHHHHHHHHHHHHcCCCCCCCCCcccCcchhhHHHHHHHHHHHHHHHHHHHHH
Q 007952 499 MTFMLAGGYFVQ--EVPVFISWIRYMSFNFHTYKILLKIQYADISPIVNGMRTDSGFREVCALVAMVFGYRLLAYLSLRK 576 (583)
Q Consensus 499 ~~~~l~~Gf~i~--~ip~~~~Wl~yis~~~ya~~~l~~~ef~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~l~~~~L~~ 576 (583)
.+.++++|.+.| .+|+|++|+.|++|.+|+.+++-.+.+.+ .....+.++++|+++.+++.++++...|+
T Consensus 134 ~~~~~~sG~~~P~~~~P~~~~~i~~~~P~t~~~~~~r~~~~~~--------~~~~~~~~~~~L~~~~~v~~~la~~~~~~ 205 (208)
T TIGR03062 134 VLQLGSSGGTFPIELLPAFFQAIHPFLPMTYSVNGLRQLISGG--------NDGTLWQAVAVLLLILVVFLALSLLSARR 205 (208)
T ss_pred HHHHccCCCccchhhCHHHHHHhhhhCcHHHHHHHHHHHHhCC--------cHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 566667888887 79999999999999999999998777643 12234668889999999999988888775
Q ss_pred hh
Q 007952 577 MK 578 (583)
Q Consensus 577 ~~ 578 (583)
.+
T Consensus 206 ~~ 207 (208)
T TIGR03062 206 KR 207 (208)
T ss_pred hc
Confidence 54
No 428
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.36 E-value=1.6e-12 Score=134.38 Aligned_cols=170 Identities=26% Similarity=0.357 Sum_probs=117.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEE----------EECCccCC--------ccccccEEEEccCCCCCC
Q 007952 18 NPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSI----------TYNDHPYS--------KSLKSKIGFVTQDDVLFP 79 (583)
Q Consensus 18 ~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I----------~~~g~~~~--------~~~~~~i~yv~Q~~~~~~ 79 (583)
+||++.+++|.||-||||-+++++|++++ +..+.. ++-|..+. ..++ .-.-||.-..+|
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kp-nlg~~~~pp~w~~il~~frgselq~yftk~le~~lk--~~~kpQyvd~ip 174 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKP-NLGRYDNPPDWQEILTYFRGSELQNYFTKILEDNLK--AIIKPQYVDQIP 174 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCC-CCCCCCCCcchHHHhhhhhhHHHhhhhhhhcccccc--CcCChHHHHHHH
Confidence 58999999999999999999999998753 222110 01111100 0000 001112111111
Q ss_pred ---CCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEE
Q 007952 80 ---HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFL 156 (583)
Q Consensus 80 ---~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illL 156 (583)
..+|+++|. ....++..+++++.+.|.+..+.- +..|||||-||.+||++-+.+.++.++
T Consensus 175 r~~k~~v~~~l~------------~~~~r~~~~~~~~~~~L~~~~~re-----~~~lsggelqrfaia~~~vq~advyMF 237 (592)
T KOG0063|consen 175 RAVKGTVGSLLD------------RKDERDNKEEVCDQLDLNNLLDRE-----VEQLSGGELQRFAIAMVCVQKADVYMF 237 (592)
T ss_pred HHHHHHHHHHHH------------HHhhcccHHHHHHHHHHhhHHHhh-----hhhcccchhhhhhhhhhhhhhcceeEe
Confidence 113333332 112223456778888887766653 568999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcC
Q 007952 157 DEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 208 (583)
Q Consensus 157 DEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~ 208 (583)
|||.+-||...+.+--..++.+.+..+=||++.||.+- +--+.|-+.+|..
T Consensus 238 DEpSsYLDVKQRLkaA~~IRsl~~p~~YiIVVEHDLsV-LDylSDFiCcLYG 288 (592)
T KOG0063|consen 238 DEPSSYLDVKQRLKAAITIRSLINPDRYIIVVEHDLSV-LDYLSDFICCLYG 288 (592)
T ss_pred cCCcccchHHHhhhHHHHHHHhhCCCCeEEEEEeechH-HHhhhcceeEEec
Confidence 99999999999999999999998888899999999753 4446788888863
No 429
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.35 E-value=1.2e-12 Score=128.77 Aligned_cols=44 Identities=20% Similarity=0.381 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCC-----CCCCHHHHHHHHHHHHHHHH
Q 007952 137 ERKRVCIGNEIIINPSLLFLDEPT-----SGLDSTTALRIVQMLQDIAE 180 (583)
Q Consensus 137 erqRv~ia~~L~~~p~illLDEPt-----sgLD~~~~~~i~~~l~~l~~ 180 (583)
|++++.||++++.+|+++++|||| +|||+.+...+.+.++++++
T Consensus 157 ~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~ 205 (215)
T PTZ00132 157 EKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN 205 (215)
T ss_pred HHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999 99999999999999999875
No 430
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.31 E-value=4.5e-12 Score=142.16 Aligned_cols=77 Identities=26% Similarity=0.400 Sum_probs=70.1
Q ss_pred cccChHHHHHHHHHHHHHhC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEE
Q 007952 131 RGVSGGERKRVCIGNEIIIN----PSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL 206 (583)
Q Consensus 131 ~~LSgGerqRv~ia~~L~~~----p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L 206 (583)
+.+||||+||++||++++.. |+++++||||+|||+.++..+.+.|+++++ +++||++||+|. +...||++++|
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~-~~~vi~iTH~~~--~~~~ad~~~~l 515 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE-RHQVLCVTHLPQ--VAAHADAHFKV 515 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEEChHH--HHHhcCeEEEE
Confidence 57899999999999999985 699999999999999999999999999975 899999999974 45689999999
Q ss_pred cCCe
Q 007952 207 GKGS 210 (583)
Q Consensus 207 ~~G~ 210 (583)
++|.
T Consensus 516 ~k~~ 519 (563)
T TIGR00634 516 EKEG 519 (563)
T ss_pred EEcc
Confidence 8764
No 431
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.30 E-value=9.4e-12 Score=124.87 Aligned_cols=77 Identities=16% Similarity=0.227 Sum_probs=64.4
Q ss_pred cCcccChHH--------HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHH-HHHHHHHHHHCCcEEEEEecCCChHHHhh
Q 007952 129 FVRGVSGGE--------RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALR-IVQMLQDIAEAGKTVVTTIHQPSSRLFHK 199 (583)
Q Consensus 129 ~~~~LSgGe--------rqRv~ia~~L~~~p~illLDEPtsgLD~~~~~~-i~~~l~~l~~~g~tii~~~H~~~~~i~~~ 199 (583)
..+.+|||+ +||+++|+++..+++|.+| ||+.+|+.+..+ ++ +.++...+.|.|+.+|+... ...
T Consensus 126 ~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la~--~~~ 199 (249)
T cd01128 126 SGKILSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLAE--RRI 199 (249)
T ss_pred CCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeheecCCCcccchH--HHHHhcCCCcEEEEchHHhh--CCC
Confidence 345689999 9999999999899999999 999999765554 55 55555467899999999654 578
Q ss_pred cCeEEEEcCCeE
Q 007952 200 FDKLILLGKGSL 211 (583)
Q Consensus 200 ~D~v~~L~~G~i 211 (583)
+|.|.+|+.|+.
T Consensus 200 ~paI~vl~s~sr 211 (249)
T cd01128 200 FPAIDILKSGTR 211 (249)
T ss_pred CCeEEEcCCCCc
Confidence 999999999987
No 432
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.28 E-value=7.4e-11 Score=127.18 Aligned_cols=175 Identities=19% Similarity=0.264 Sum_probs=115.0
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccC---C---------ccccccEEEEcc
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY---S---------KSLKSKIGFVTQ 73 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~---~---------~~~~~~i~yv~Q 73 (583)
+..+++++ +.+.+|+.++|+|+||+|||||+++|+|... +..|.|.+.|+.- . ..+++.+.+|.+
T Consensus 145 g~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~--~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~ 221 (438)
T PRK07721 145 GVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTS--ADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVAT 221 (438)
T ss_pred chhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccC--CCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEEC
Confidence 35689999 9999999999999999999999999999653 4679999866432 2 124567888887
Q ss_pred CCCCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHH-HHHHhCCC
Q 007952 74 DDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG-NEIIINPS 152 (583)
Q Consensus 74 ~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia-~~L~~~p~ 152 (583)
.+.-. -.+....+.+ -.+.|.+.+-|- |..+ ...+++ |.+-| |++.
T Consensus 222 ~~~~~---~~r~~~~~~a--------------~~iAEyfr~~g~----~Vll---~~Dslt-----r~A~A~rEis---- 268 (438)
T PRK07721 222 SDQPA---LMRIKGAYTA--------------TAIAEYFRDQGL----NVML---MMDSVT-----RVAMAQREIG---- 268 (438)
T ss_pred CCCCH---HHHHHHHHHH--------------HHHHHHHHHCCC----cEEE---EEeChH-----HHHHHHHHHH----
Confidence 54311 0111111111 112233333232 1111 011222 11111 1111
Q ss_pred EEEEeC--CCCCCCHHHHHHHHHHHHHHHH--CCc-----EEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhH
Q 007952 153 LLFLDE--PTSGLDSTTALRIVQMLQDIAE--AGK-----TVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 220 (583)
Q Consensus 153 illLDE--PtsgLD~~~~~~i~~~l~~l~~--~g~-----tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 220 (583)
+.+.| .|+|+|+.....+.+.++++.+ +|. ||++.+||.++ ..||++..+.+|+++..++..+.
T Consensus 269 -l~~ge~P~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e---~i~d~v~~i~dG~Ivls~~la~~ 341 (438)
T PRK07721 269 -LAVGEPPTTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE---PIADTVRGILDGHFVLDRQLANK 341 (438)
T ss_pred -HhcCCCCccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc---hhhhhEEEecCEEEEEeccHHHC
Confidence 11234 3789999999999999999874 575 99999999763 67999999999999999987763
No 433
>TIGR01291 nodJ ABC-2 type transporter, NodJ family. Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins.
Probab=99.28 E-value=2.9e-09 Score=107.67 Aligned_cols=237 Identities=12% Similarity=0.029 Sum_probs=144.9
Q ss_pred HHHHHHHHHHH-hhc-chhHHHHHHHHHHHHHHHHHHhhCCCCC-ChhhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 007952 330 YTILFRRGIKE-HRH-DYFSWLRITQVLATAVILGLLWWQSDSK-SPKGLEDQ--AGLLFFIAVFWSFFPIFTAIFTFPQ 404 (583)
Q Consensus 330 ~~~l~~R~~~~-~r~-~~~~~~r~~~~~~~~li~G~lf~~~~~~-~~~~~~~~--~g~lf~~~~~~~~~~~~~~i~~~~~ 404 (583)
...+.+|+++. +|+ +......+++-++.-+++|..+-...++ +..+..+- -|.+-+.+.+.++.........-..
T Consensus 7 ~~~~~~R~~~~~~r~~~~~~~~~~~~P~~~l~~fg~~~~~~~~~~~g~~y~~f~~pg~l~~~~~~~~~~~~~~~~~~~~r 86 (253)
T TIGR01291 7 WAAVWRRNALAWKKVAAASVLGNLADPLIYLFGLGVGLGKMVGSVDGVSYAAFLAAGMVATSAMTASTFETIYATFARMR 86 (253)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556888876 455 4444445666666666677665432111 10111111 1222222221111110000001112
Q ss_pred hhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 007952 405 ERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQGLGLAIGAIL 484 (583)
Q Consensus 405 er~v~~rE~~~~~Y~~~ay~la~~l~~lP~~~~~~~~~~~i~Y~~~gl~~~~~~f~~~~~~~~l~~~~~~~~g~~i~~~~ 484 (583)
|+..+.|-+..-. ++..+.++|++.+.-..++..++...+.++ .|..+. ...+..+..+++..++..++|.+++++.
T Consensus 87 ~~g~~~~l~~~Pv-~~~~~~~g~~~~~~~~~~~~~~ii~~~~~~-~g~~~~-~~~l~~~~~~ll~~l~~~~lg~~~a~~~ 163 (253)
T TIGR01291 87 VTRTWEAMLYTPI-TVGDIVLGEVAWAATKASLAGTIIGVVTAT-LGYIEW-WSLIYILPVIALTGLAFASLSMLVAALA 163 (253)
T ss_pred HcccHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhchh-hhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444443444 678999999998877666666655544443 344433 3343344455566777789999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhcccC--CCccchhhhhccCHHHHHHHHHHHHHcCCCCCCCCCcccCcchhhHHHHHHH
Q 007952 485 MDLKKATTLASVTIMTFMLAGGYFVQ--EVPVFISWIRYMSFNFHTYKILLKIQYADISPIVNGMRTDSGFREVCALVAM 562 (583)
Q Consensus 485 ~~~~~A~~~~~~~~~~~~l~~Gf~i~--~ip~~~~Wl~yis~~~ya~~~l~~~ef~~~~~~~~g~~~~~~~~~~~~l~~~ 562 (583)
++.+.+..+..++..|+++.+|.+.| .+|.|++|+.+++|..|+.|++-..-+++ +....+.++++++++
T Consensus 164 ~~~~~~~~i~~~i~~pl~flSg~~~P~~~mP~~lq~i~~~nPlt~~v~~~R~~~~g~--------~~~~~~~~~~~l~~~ 235 (253)
T TIGR01291 164 PSYAYFAFYQSLVITPMLFLSGVVFPVFQLNDVIQGMTHFLPLAHSIDDIRPVMLGG--------PGTQVGLHLGALCLY 235 (253)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhcCHHhChHHHHHHHHHCcHHHHHHHHHHHHhCC--------CcHHHHHHHHHHHHH
Confidence 99999888889999999999999988 79999999999999999999965554322 111224567888888
Q ss_pred HHHHHHHHHHHHHHh
Q 007952 563 VFGYRLLAYLSLRKM 577 (583)
Q Consensus 563 ~~~~~~l~~~~L~~~ 577 (583)
.+++..++....|++
T Consensus 236 ~vv~~~la~~~fr~~ 250 (253)
T TIGR01291 236 AVVPFFISAALLRRR 250 (253)
T ss_pred HHHHHHHHHHHHHhh
Confidence 888877777666654
No 434
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.28 E-value=9.9e-12 Score=148.95 Aligned_cols=81 Identities=21% Similarity=0.239 Sum_probs=74.1
Q ss_pred ccCcccChHHHHHHHHHHHHHh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHH
Q 007952 128 SFVRGVSGGERKRVCIGNEIII----------NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLF 197 (583)
Q Consensus 128 ~~~~~LSgGerqRv~ia~~L~~----------~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~ 197 (583)
..+++|||||++|++||++|+. +|++||+||||+|||+.+...+++.|+++.+.|++|+++||++. ...
T Consensus 946 r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~-~~~ 1024 (1042)
T TIGR00618 946 RPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPE-FRE 1024 (1042)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHH
Confidence 4678999999999999999986 79999999999999999999999999999888999999999975 467
Q ss_pred hhcCeEEEEcCC
Q 007952 198 HKFDKLILLGKG 209 (583)
Q Consensus 198 ~~~D~v~~L~~G 209 (583)
..+|+|.+++.|
T Consensus 1025 ~~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1025 RIPHRILVKKTN 1036 (1042)
T ss_pred hhCCEEEEEECC
Confidence 889999999753
No 435
>PRK10869 recombination and repair protein; Provisional
Probab=99.27 E-value=1.1e-11 Score=138.09 Aligned_cols=76 Identities=24% Similarity=0.396 Sum_probs=69.3
Q ss_pred cccChHHHHHHHHHHHHHh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEE
Q 007952 131 RGVSGGERKRVCIGNEIII----NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL 206 (583)
Q Consensus 131 ~~LSgGerqRv~ia~~L~~----~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L 206 (583)
+.+||||+||++||++++. +|+++++|||++|||..++..+.+.|+++++ +.+|||+||+|. +...+|+.+.+
T Consensus 429 k~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~-~~qvi~iTH~~~--~~~~ad~~~~v 505 (553)
T PRK10869 429 KVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE-STQVMCVTHLPQ--VAGCGHQHFFV 505 (553)
T ss_pred hhCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH--HHHhCCEEEEE
Confidence 4689999999999999997 5899999999999999999999999999975 789999999984 55899999999
Q ss_pred cCC
Q 007952 207 GKG 209 (583)
Q Consensus 207 ~~G 209 (583)
+++
T Consensus 506 ~k~ 508 (553)
T PRK10869 506 SKE 508 (553)
T ss_pred ecc
Confidence 875
No 436
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.25 E-value=4.8e-12 Score=145.87 Aligned_cols=81 Identities=19% Similarity=0.236 Sum_probs=63.8
Q ss_pred CcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcC
Q 007952 130 VRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ-MLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 208 (583)
Q Consensus 130 ~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~~~~~i~~-~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~ 208 (583)
...+|+|++|++.|++++ .+|+++++|||++|+|+.....+.. +++.+.+.|.++|++||++.. ....+|+..+. +
T Consensus 388 lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el-~~~~~~~~~v~-~ 464 (782)
T PRK00409 388 LSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKEL-KALMYNREGVE-N 464 (782)
T ss_pred hhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHH-HHHHhcCCCeE-E
Confidence 357999999999999988 8999999999999999999888854 677787789999999999542 22334544443 4
Q ss_pred CeEEE
Q 007952 209 GSLLY 213 (583)
Q Consensus 209 G~iv~ 213 (583)
+.+.+
T Consensus 465 ~~~~~ 469 (782)
T PRK00409 465 ASVEF 469 (782)
T ss_pred EEEEE
Confidence 55554
No 437
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.25 E-value=9.2e-11 Score=130.11 Aligned_cols=137 Identities=23% Similarity=0.394 Sum_probs=104.3
Q ss_pred CCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHH------HHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhC--
Q 007952 79 PHLTVKETLTYAALLRLPNTLTKQQKEKRAIDV------INELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIIN-- 150 (583)
Q Consensus 79 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~------l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~-- 150 (583)
..|++.|.+.|...+.+... ..+..+..+.++ |..+||.-.. -++...+|||||.||+-+|..+-++
T Consensus 427 ~~msi~~~~~f~~~l~l~~~-~~~ia~~ilkei~~RL~fL~~VGL~YLt----L~R~a~TLSGGEaQRIRLAtqiGS~Lt 501 (935)
T COG0178 427 SEMSIADALEFFENLKLSEK-EKKIAEPILKEIKERLGFLVDVGLGYLT----LSRSAGTLSGGEAQRIRLATQIGSGLT 501 (935)
T ss_pred hhccHHHHHHHHHhCCCchh-hHHHHHHHHHHHHHHHHHHHHcCcCccc----ccccCCCcChhHHHHHHHHHHhcccce
Confidence 46788888888776653221 111112222232 3445664321 1345679999999999999999776
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEE------cCCeEEEEcChhhHHH
Q 007952 151 PSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL------GKGSLLYFGKASEAMA 222 (583)
Q Consensus 151 p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~~ 222 (583)
-=+++||||+-||-+..-.++++.|++|++.|.|+|++.||+ +....+|+|+-+ +.|+|++.|+++++++
T Consensus 502 GVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDe--dti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~ 577 (935)
T COG0178 502 GVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDE--DTIRAADHIIDIGPGAGEHGGEIVAEGTPEELLA 577 (935)
T ss_pred eeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCH--HHHhhcCEEEeeCCCCCcCCCEEEEccCHHHHHh
Confidence 347799999999999999999999999999999999999995 467889999998 4689999999999875
No 438
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.25 E-value=1.2e-11 Score=139.00 Aligned_cols=79 Identities=24% Similarity=0.381 Sum_probs=69.9
Q ss_pred cCcccChHHHHHHHHHHHHH----------hCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHH
Q 007952 129 FVRGVSGGERKRVCIGNEII----------INPSLLFLDEPT-SGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLF 197 (583)
Q Consensus 129 ~~~~LSgGerqRv~ia~~L~----------~~p~illLDEPt-sgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~ 197 (583)
.+..||||||||++||++|+ .+|++++||||| ++||+.+...+.+.|+++ +|.|||++||++. ..
T Consensus 465 ~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~--~~~~iiiish~~~--~~ 540 (562)
T PHA02562 465 SYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL--KDTNVFVISHKDH--DP 540 (562)
T ss_pred ChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC--CCCeEEEEECchh--ch
Confidence 45789999999999999887 599999999998 789999999999999998 5889999999964 45
Q ss_pred hhcCeEEEEcC-CeE
Q 007952 198 HKFDKLILLGK-GSL 211 (583)
Q Consensus 198 ~~~D~v~~L~~-G~i 211 (583)
..+|++++|.+ |+.
T Consensus 541 ~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 541 QKFDRHLKMEKVGRF 555 (562)
T ss_pred hhhhcEEEEEEECCe
Confidence 77999999986 544
No 439
>TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein. Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis.
Probab=99.24 E-value=5.8e-09 Score=105.34 Aligned_cols=233 Identities=11% Similarity=0.153 Sum_probs=147.9
Q ss_pred HHHHHHHHHHHHH-hhcchhHHHHHHHHHHHHHHHHHHhhCC-CC------CChhh--HHHHHHHHHHHHHHHHHHHHHH
Q 007952 328 QQYTILFRRGIKE-HRHDYFSWLRITQVLATAVILGLLWWQS-DS------KSPKG--LEDQAGLLFFIAVFWSFFPIFT 397 (583)
Q Consensus 328 ~q~~~l~~R~~~~-~r~~~~~~~r~~~~~~~~li~G~lf~~~-~~------~~~~~--~~~~~g~lf~~~~~~~~~~~~~ 397 (583)
+++..+++|.++. .|++......+++-++.-+++|.+|-.. +. ++..+ ..--.|.+-+.....++..
T Consensus 2 ~~~~~l~~rel~~~~r~~~~~~~~ll~Pl~~l~~f~~~f~~~~~~~~~~~~~~~~~y~~fl~pGi~~~~~~~~~~~~--- 78 (253)
T TIGR03861 2 ICFNGIVLREALRFVQQRSRFLSALVRPLLWLLVFAAGFRAALGISIIEPYDTYITYEVYIVPGLCCMILLFNGMQS--- 78 (253)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHh---
Confidence 5788899999986 5666555566777777777778777432 10 00001 1112233333222222111
Q ss_pred HHH-HHHHhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCChHHHHHHHHHHHHHHHHHHHH
Q 007952 398 AIF-TFPQERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQGL 476 (583)
Q Consensus 398 ~i~-~~~~er~v~~rE~~~~~Y~~~ay~la~~l~~lP~~~~~~~~~~~i~Y~~~gl~~~~~~f~~~~~~~~l~~~~~~~~ 476 (583)
+.. ..-+|+..+.+=+.... +...+.++|++...-..+++.+++..+.+. .|.+.+...++.....+++..++..++
T Consensus 79 ~~~~~~~r~~g~~~~l~~~p~-~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~-~g~~~~~~~~l~~~~~~~l~~~~~~~l 156 (253)
T TIGR03861 79 SLSMVYDREMGSMRVLLTSPL-PRPFLLFCKLLASALISLLQVYAFLAIAAL-VGVQPPVWGYVSVLPALVLVAFMLGAL 156 (253)
T ss_pred hhHhHHhHhcCHHHHHhhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCCchhHHHHHHHHHHHHHHHHHH
Confidence 111 11223334444454444 678899999999987777766555544433 366555444444444455667778899
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcccC--C---CccchhhhhccCHHHHHHHHHHHHHcCCCCCCCCCcccCc
Q 007952 477 GLAIGAILMDLKKATTLASVTIMTFMLAGGYFVQ--E---VPVFISWIRYMSFNFHTYKILLKIQYADISPIVNGMRTDS 551 (583)
Q Consensus 477 g~~i~~~~~~~~~A~~~~~~~~~~~~l~~Gf~i~--~---ip~~~~Wl~yis~~~ya~~~l~~~ef~~~~~~~~g~~~~~ 551 (583)
|+++|+++++.+.+..+.++++.+++..+|.+.| . +|+|++|+.++||..|..|++=..-+++ .
T Consensus 157 gl~la~l~~~~~~~~~i~~~~~~~l~flSgi~~p~~~~~~~p~~l~~i~~~nPl~~~i~~~R~~~~g~-----------~ 225 (253)
T TIGR03861 157 GLALSNLIRQLENFAGVMNFVIFPMFFLSSALYPLWKMQEASTWLYWICALNPFTHAVELVRFALYGQ-----------L 225 (253)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHhhHhhhhhhcccccHHHHHHHHhCcHHHHHHHHHHHHhCC-----------c
Confidence 9999999999988888888888888889998875 3 4889999999999999999865432211 1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHH
Q 007952 552 GFREVCALVAMVFGYRLLAYLSLRK 576 (583)
Q Consensus 552 ~~~~~~~l~~~~~~~~~l~~~~L~~ 576 (583)
.+...+++.++.+++..++....||
T Consensus 226 ~~~~~~~~~~~~~v~~~~~~~~fr~ 250 (253)
T TIGR03861 226 NLPALGWTLGATTLFTLLAFWGFDP 250 (253)
T ss_pred chhHHHHHHHHHHHHHHHHHHHhhc
Confidence 2455667777777777766665554
No 440
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=99.24 E-value=2.1e-11 Score=120.76 Aligned_cols=64 Identities=22% Similarity=0.489 Sum_probs=54.4
Q ss_pred CcccChHHHHHHHHHHHHHhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCC
Q 007952 130 VRGVSGGERKRVCIGNEIIINP---SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPS 193 (583)
Q Consensus 130 ~~~LSgGerqRv~ia~~L~~~p---~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~ 193 (583)
...+|.|+||.+.++..+...+ .++++|||-++|+|..+..+++.|++.++.+.-+|+|||.|.
T Consensus 234 ~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~ 300 (303)
T PF13304_consen 234 LSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPF 300 (303)
T ss_dssp GS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GG
T ss_pred eccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccch
Confidence 4567999999999999988776 899999999999999999999999888776789999999874
No 441
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.23 E-value=8.5e-11 Score=117.05 Aligned_cols=153 Identities=19% Similarity=0.257 Sum_probs=94.0
Q ss_pred eEEEEeCCeEEEEECCCCCcHHHH-HHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHHHHHHHH
Q 007952 13 ITGSVNPGEVLALMGPSGSGKTTL-LNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAA 91 (583)
Q Consensus 13 vs~~i~~Ge~~~i~G~nGaGKSTL-l~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~l~~~~ 91 (583)
+.+-+++|++++|.|+|||||||| ++.+.+... .| .++.|+..+ .|..+.+....
T Consensus 17 l~ggi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~----~g--------------~~~~yi~~e------~~~~~~~~~~~ 72 (230)
T PRK08533 17 LGGGIPAGSLILIEGDESTGKSILSQRLAYGFLQ----NG--------------YSVSYVSTQ------LTTTEFIKQMM 72 (230)
T ss_pred hCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHh----CC--------------CcEEEEeCC------CCHHHHHHHHH
Confidence 345689999999999999999999 688887432 12 123455532 35555555443
Q ss_pred HcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHH----hCCCEEEEeCCCCCC----
Q 007952 92 LLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEII----INPSLLFLDEPTSGL---- 163 (583)
Q Consensus 92 ~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~----~~p~illLDEPtsgL---- 163 (583)
.+.. . +++.... +.-...+ ....+|+++.++-.+.+.+- .+|+++++||||+++
T Consensus 73 ~~g~----~-------~~~~~~~-~~l~~~~------~~~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~ 134 (230)
T PRK08533 73 SLGY----D-------INKKLIS-GKLLYIP------VYPLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDA 134 (230)
T ss_pred HhCC----c-------hHHHhhc-CcEEEEE------ecccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCc
Confidence 3221 1 1111111 1000001 01236777665555444333 369999999999999
Q ss_pred CHHHHHHHHHHHHHHHHCCcEEEEEecCCCh------HHHhhcCeEEEEc
Q 007952 164 DSTTALRIVQMLQDIAEAGKTVVTTIHQPSS------RLFHKFDKLILLG 207 (583)
Q Consensus 164 D~~~~~~i~~~l~~l~~~g~tii~~~H~~~~------~i~~~~D~v~~L~ 207 (583)
|+.....+.+.+++++++|.|+++++|+... .+..++|-|+.|+
T Consensus 135 d~~~~~~l~~~l~~l~~~g~tvi~t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 135 SEVAVNDLMAFFKRISSLNKVIILTANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred chHHHHHHHHHHHHHHhCCCEEEEEecccccccccceeEEEeeeEEEEEE
Confidence 8888889999999998888888776664321 1233567777775
No 442
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.22 E-value=1.7e-11 Score=120.75 Aligned_cols=135 Identities=19% Similarity=0.228 Sum_probs=88.0
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHH
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 85 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e 85 (583)
++.+-+|+++..++|++++|.||||+||||+++++++...- ... |..+... ..+++++ +.++..+...|
T Consensus 16 ~~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~l-a~~------G~~vpa~-~~~i~~~---~~i~~~~~~~d 84 (218)
T cd03286 16 SSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIM-AQM------GMDVPAK-SMRLSLV---DRIFTRIGARD 84 (218)
T ss_pred CCeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHH-HHc------CCccCcc-ccEeccc---cEEEEecCccc
Confidence 46788999999999999999999999999999999974210 011 1111100 0111111 11222222222
Q ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCh--HHHHHHHHHHHHHhCCCEEEEeCCCCCC
Q 007952 86 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG--GERKRVCIGNEIIINPSLLFLDEPTSGL 163 (583)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSg--GerqRv~ia~~L~~~p~illLDEPtsgL 163 (583)
++.. ++|- -|-+|++-....+.+|+++++|||.+|+
T Consensus 85 ~~~~------------------------------------------~~StF~~e~~~~~~il~~~~~~sLvLlDE~~~Gt 122 (218)
T cd03286 85 DIMK------------------------------------------GESTFMVELSETANILRHATPDSLVILDELGRGT 122 (218)
T ss_pred cccc------------------------------------------CcchHHHHHHHHHHHHHhCCCCeEEEEecccCCC
Confidence 2210 1111 2444444444445789999999999999
Q ss_pred CHHHHHHHHHH-HHHHHHC-CcEEEEEecCCC
Q 007952 164 DSTTALRIVQM-LQDIAEA-GKTVVTTIHQPS 193 (583)
Q Consensus 164 D~~~~~~i~~~-l~~l~~~-g~tii~~~H~~~ 193 (583)
|+.....+... ++.+.+. +.++|++||++.
T Consensus 123 ~~~dg~~la~ail~~L~~~~~~~~i~~TH~~e 154 (218)
T cd03286 123 STHDGYAIAHAVLEYLVKKVKCLTLFSTHYHS 154 (218)
T ss_pred CchHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 99999888888 7778776 899999999964
No 443
>TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family. This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.
Probab=99.22 E-value=4.2e-09 Score=104.99 Aligned_cols=162 Identities=16% Similarity=0.251 Sum_probs=113.4
Q ss_pred hhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 007952 405 ERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQGLGLAIGAIL 484 (583)
Q Consensus 405 er~v~~rE~~~~~Y~~~ay~la~~l~~lP~~~~~~~~~~~i~Y~~~gl~~~~~~f~~~~~~~~l~~~~~~~~g~~i~~~~ 484 (583)
|+-.+.|-+..-. ++..|+++|.+..++..+++..++ .+++++.|++.....+ ..++.+.+....+.+++.++++++
T Consensus 64 ~~G~l~rl~~~P~-~~~~~l~g~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~ 140 (232)
T TIGR00025 64 RYGALKRLGATPL-PRLGILAGRSLAVVARVFLQTLIL-LVIGFVLGFRFAGGAL-TALTLGAVIIALGTALFAALGLVA 140 (232)
T ss_pred HhCHHHHHhcCCC-cHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhccCcCCchH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555544 788999999998888877665544 4556677887654333 223333444555666777777766
Q ss_pred C---CHHHHHHHHHHHHHHHHHHhhcccC--CCccchhhhhccCHHHHHHHHHHHHHcCCCCCCCCCcccCcchhhHHHH
Q 007952 485 M---DLKKATTLASVTIMTFMLAGGYFVQ--EVPVFISWIRYMSFNFHTYKILLKIQYADISPIVNGMRTDSGFREVCAL 559 (583)
Q Consensus 485 ~---~~~~A~~~~~~~~~~~~l~~Gf~i~--~ip~~~~Wl~yis~~~ya~~~l~~~ef~~~~~~~~g~~~~~~~~~~~~l 559 (583)
+ +.+.+..++.+..++++++||.+.| .+|.|++|+.+++|.+|+.+++-..-.+ |.+....+.+++++
T Consensus 141 ~~~~~~~~~~~i~~~~~~p~~~lSG~~~P~~~mP~~lq~i~~~~P~t~~~~~~r~~~~~-------~~~~~~~~~~~~~l 213 (232)
T TIGR00025 141 GGTLQAEIVLAVANLVWFIFALLSAGLVPLNLIPTWIKWFVRVQPSSYATEALRQAATV-------SVDTFGAVRDLVVV 213 (232)
T ss_pred hccccHHHHHHHHHHHHHHHHHHhheeeecccccHHHHHHHHhCcHHHHHHHHHHHHcC-------CCChhhHHHHHHHH
Confidence 4 4555577888888899999999998 7999999999999999999987654322 22233345678888
Q ss_pred HHHHHHHHHHHHHHHHH
Q 007952 560 VAMVFGYRLLAYLSLRK 576 (583)
Q Consensus 560 ~~~~~~~~~l~~~~L~~ 576 (583)
+++.+++..++....||
T Consensus 214 ~~~~~v~~~la~~~~~r 230 (232)
T TIGR00025 214 LAFWVALAALAAIRLRR 230 (232)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 88888887777666554
No 444
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.18 E-value=1.7e-10 Score=110.66 Aligned_cols=145 Identities=21% Similarity=0.125 Sum_probs=95.5
Q ss_pred EEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCCHH
Q 007952 23 LALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQ 102 (583)
Q Consensus 23 ~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~ 102 (583)
+.|.||+|+|||||.--++-... .. | +.+.|+.= ..|..+.+.....+. .+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~---~~------g--------~~v~~~s~------e~~~~~~~~~~~~~g----~~~- 53 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGL---AR------G--------EPGLYVTL------EESPEELIENAESLG----WDL- 53 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH---HC------C--------CcEEEEEC------CCCHHHHHHHHHHcC----CCh-
Confidence 67899999999999876653111 11 1 12334432 124555444433221 111
Q ss_pred HHHHHHHHHHHHcCCCccccccccCccCcccChHHHH------HHHHHHHHHhCCCEEEEeCCCCCCC---HHHHHHHHH
Q 007952 103 QKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK------RVCIGNEIIINPSLLFLDEPTSGLD---STTALRIVQ 173 (583)
Q Consensus 103 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerq------Rv~ia~~L~~~p~illLDEPtsgLD---~~~~~~i~~ 173 (583)
++ +...|+....+ ..+..+|+||+| +.........+|+++++|||++.+| ......+.+
T Consensus 54 ------~~-l~~~g~l~~~d-----~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~ 121 (187)
T cd01124 54 ------ER-LEDEGLLAIVD-----ADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRR 121 (187)
T ss_pred ------HH-HHhcCCeEEEe-----cCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHH
Confidence 11 22233332222 235678999998 4555555667999999999999999 888888999
Q ss_pred HHHHHHHCCcEEEEEecCCCh--------HHHhhcCeEEEEc
Q 007952 174 MLQDIAEAGKTVVTTIHQPSS--------RLFHKFDKLILLG 207 (583)
Q Consensus 174 ~l~~l~~~g~tii~~~H~~~~--------~i~~~~D~v~~L~ 207 (583)
.++.+++.|.|+|+++|+... .+..++|.++.|+
T Consensus 122 l~~~l~~~g~tvi~v~~~~~~~~~~~~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 122 LLFALKRFGVTTLLTSEQSGLEGTGFGGGDVEYLVDGVIRLR 163 (187)
T ss_pred HHHHHHHCCCEEEEEeccccCCCcccCcCceeEeeeEEEEEE
Confidence 999998889999999998653 2567889999886
No 445
>COG3910 Predicted ATPase [General function prediction only]
Probab=99.16 E-value=4.7e-10 Score=104.97 Aligned_cols=68 Identities=26% Similarity=0.513 Sum_probs=55.4
Q ss_pred ccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCC
Q 007952 125 IGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPS 193 (583)
Q Consensus 125 ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~ 193 (583)
.|+......|-||-=---+.+. .++.-+++||||-++|.+.-+..++..|+++++.|.-+|+.||.|-
T Consensus 122 ~~~~sLh~~SHGEsf~~i~~~r-f~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPi 189 (233)
T COG3910 122 YGGRSLHHMSHGESFLAIFHNR-FNGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPI 189 (233)
T ss_pred cCCcchhhhccchHHHHHHHHH-hccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChh
Confidence 3444556789999643333332 4678899999999999999999999999999999999999999884
No 446
>PRK13695 putative NTPase; Provisional
Probab=99.13 E-value=2.3e-11 Score=115.87 Aligned_cols=81 Identities=14% Similarity=0.197 Sum_probs=65.2
Q ss_pred CcccChHHHHHHHHHHHHHhCCCEEEEeCC--CCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEc
Q 007952 130 VRGVSGGERKRVCIGNEIIINPSLLFLDEP--TSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG 207 (583)
Q Consensus 130 ~~~LSgGerqRv~ia~~L~~~p~illLDEP--tsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~ 207 (583)
...+||+|+.+..+++..+.+|+++++||| +.++| ..+.+.+.++.+.|+++|+++|+. .+...+|++..+.
T Consensus 76 ~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~----~~~~~~l~~~~~~~~~~i~v~h~~--~~~~~~~~i~~~~ 149 (174)
T PRK13695 76 VVNLEDLERIGIPALERALEEADVIIIDEIGKMELKS----PKFVKAVEEVLDSEKPVIATLHRR--SVHPFVQEIKSRP 149 (174)
T ss_pred EEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhh----HHHHHHHHHHHhCCCeEEEEECch--hhHHHHHHHhccC
Confidence 346999999999999999999999999995 44444 445666777666799999999983 3556789999999
Q ss_pred CCeEEEEcC
Q 007952 208 KGSLLYFGK 216 (583)
Q Consensus 208 ~G~iv~~G~ 216 (583)
+|++.+.-+
T Consensus 150 ~~~i~~~~~ 158 (174)
T PRK13695 150 GGRVYELTP 158 (174)
T ss_pred CcEEEEEcc
Confidence 999877643
No 447
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=99.10 E-value=2.7e-10 Score=118.41 Aligned_cols=143 Identities=19% Similarity=0.226 Sum_probs=94.2
Q ss_pred eEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCcc-CCccccccEEEEccCCCCCCCCCHHHHHHHHH
Q 007952 13 ITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP-YSKSLKSKIGFVTQDDVLFPHLTVKETLTYAA 91 (583)
Q Consensus 13 vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~-~~~~~~~~i~yv~Q~~~~~~~lTv~e~l~~~~ 91 (583)
+++.+++|+.++|.||+|||||||+++|++..+ +..|.+.+++.. +....+..+.++.+... +
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~--~~~~iv~ied~~El~~~~~~~~~l~~~~~~--~------------ 200 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIP--KDERIITIEDTREIFLPHPNYVHLFYSKGG--Q------------ 200 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCC--ccccEEEEcCccccCCCCCCEEEEEecCCC--C------------
Confidence 557788999999999999999999999999653 456666664311 00000112222211100 0
Q ss_pred HcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHH
Q 007952 92 LLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRI 171 (583)
Q Consensus 92 ~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~~~~~i 171 (583)
+ ...++- .-.+..+|-.+|+++++|||.+ .+.
T Consensus 201 ------------------------~-------------~~~~~~----~~~l~~~Lr~~pd~ii~gE~r~-------~e~ 232 (308)
T TIGR02788 201 ------------------------G-------------LAKVTP----KDLLQSCLRMRPDRIILGELRG-------DEA 232 (308)
T ss_pred ------------------------C-------------cCccCH----HHHHHHHhcCCCCeEEEeccCC-------HHH
Confidence 0 001111 1134556778999999999996 345
Q ss_pred HHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 172 VQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 172 ~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
.+.++.+...+.+++.|+|..+ ..+..||+..|..|++...|.+.+.+
T Consensus 233 ~~~l~a~~~g~~~~i~T~Ha~~--~~~~~~Rl~~l~~~~~~~~g~~~~~~ 280 (308)
T TIGR02788 233 FDFIRAVNTGHPGSITTLHAGS--PEEAFEQLALMVKSSQAGLGLDFAYI 280 (308)
T ss_pred HHHHHHHhcCCCeEEEEEeCCC--HHHHHHHHHHHhhccccccCCCHHHH
Confidence 6677776643346799999976 45678999999999998888887765
No 448
>PRK03918 chromosome segregation protein; Provisional
Probab=99.09 E-value=2.1e-10 Score=135.79 Aligned_cols=79 Identities=27% Similarity=0.304 Sum_probs=69.2
Q ss_pred ccCcccChHHHHH------HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcC
Q 007952 128 SFVRGVSGGERKR------VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFD 201 (583)
Q Consensus 128 ~~~~~LSgGerqR------v~ia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D 201 (583)
..+..|||||+++ +++|++++.+|+++++||||+|||+..+..+.+.|+.+++.+.+||++||++ ++...||
T Consensus 784 ~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~--~~~~~~d 861 (880)
T PRK03918 784 RPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDE--ELKDAAD 861 (880)
T ss_pred CChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCH--HHHHhCC
Confidence 3567899999995 5555678899999999999999999999999999999887788999999996 3678999
Q ss_pred eEEEEcC
Q 007952 202 KLILLGK 208 (583)
Q Consensus 202 ~v~~L~~ 208 (583)
+++.|..
T Consensus 862 ~~~~l~~ 868 (880)
T PRK03918 862 YVIRVSL 868 (880)
T ss_pred eEEEEEe
Confidence 9999973
No 449
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=99.07 E-value=4e-10 Score=134.69 Aligned_cols=80 Identities=25% Similarity=0.220 Sum_probs=68.7
Q ss_pred ccCcccChHHHHHHHHHHHHHh--------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhh
Q 007952 128 SFVRGVSGGERKRVCIGNEIII--------NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHK 199 (583)
Q Consensus 128 ~~~~~LSgGerqRv~ia~~L~~--------~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~ 199 (583)
..+++|||||++|++||++|+. +|++||+||||++||+.+...+++.|.++++.|+||+++||... ...++
T Consensus 945 r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~-l~~~i 1023 (1047)
T PRK10246 945 RDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEA-MKERI 1023 (1047)
T ss_pred CCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHH-HHHhc
Confidence 4578999999999999999996 89999999999999999999999999999988999999999743 23344
Q ss_pred cCeEEEEcC
Q 007952 200 FDKLILLGK 208 (583)
Q Consensus 200 ~D~v~~L~~ 208 (583)
-.+|.|-..
T Consensus 1024 ~~qi~V~k~ 1032 (1047)
T PRK10246 1024 PVQIKVKKI 1032 (1047)
T ss_pred cceEEEEEC
Confidence 456666643
No 450
>PRK15066 inner membrane transport permease; Provisional
Probab=99.05 E-value=2.1e-07 Score=94.32 Aligned_cols=151 Identities=15% Similarity=0.171 Sum_probs=105.4
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007952 418 YRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQGLGLAIGAILMDLKKATTLASVT 497 (583)
Q Consensus 418 Y~~~ay~la~~l~~lP~~~~~~~~~~~i~Y~~~gl~~~~~~f~~~~~~~~l~~~~~~~~g~~i~~~~~~~~~A~~~~~~~ 497 (583)
-++..+.+++++...-..++..++...+.+...|.+.. ........+++..++....|+++++..++.+.+..+.+++
T Consensus 101 ~~~~~~~~~~il~~~~~~~~~~~iil~i~~~~~~~~~~--~~~~~l~~~ll~~~~f~~~gl~~a~~~~~~~~~~~i~~~~ 178 (257)
T PRK15066 101 VPNHVIILGYVGGGVARGLCVGILVTLISLFFVPLQVH--HWGIVLLTVLLTAILFSLGGLINAVFAKSFDDISIIPTFV 178 (257)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 37788999999987766666655555555444466543 2222233333333333445888888888888888888888
Q ss_pred HHHHHHHhhcccC--CCccchhhhhccCHHHHHHHHHHHHHcCCCCCCCCCcccCcchhhHHHHHHHHHHHHHHHHHHHH
Q 007952 498 IMTFMLAGGYFVQ--EVPVFISWIRYMSFNFHTYKILLKIQYADISPIVNGMRTDSGFREVCALVAMVFGYRLLAYLSLR 575 (583)
Q Consensus 498 ~~~~~l~~Gf~i~--~ip~~~~Wl~yis~~~ya~~~l~~~ef~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~l~~~~L~ 575 (583)
+.+++..+|.+.| ++|+|++|+.+++|..|..|++=..-+++ .....+.+.++++++.+++.+++....|
T Consensus 179 ~~pl~flSgi~~p~~~lP~~l~~i~~~nPlt~~v~~~R~~~~g~--------~~~~~~~~l~~l~~~~~v~~~la~~~~~ 250 (257)
T PRK15066 179 LTPLTYLGGVFYSISLLPPFWQGVSKLNPIVYMVNAFRYGFLGI--------SDVPLWLAFAVLLVFIVVLYLLAWYLLE 250 (257)
T ss_pred HHHHHHHcchhccHHhChHHHHHHHHHCcHHHHHHHHHHHHcCC--------CCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999987 79999999999999999999865442211 1112356788888888888888877776
Q ss_pred Hhh
Q 007952 576 KMK 578 (583)
Q Consensus 576 ~~~ 578 (583)
|.+
T Consensus 251 r~~ 253 (257)
T PRK15066 251 RGR 253 (257)
T ss_pred hhc
Confidence 544
No 451
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=99.04 E-value=3.8e-09 Score=123.24 Aligned_cols=78 Identities=26% Similarity=0.256 Sum_probs=64.6
Q ss_pred HhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHHCCcEEEEEecCCChH--------HHhhcCeEEEEcCCeEEEEcChh
Q 007952 148 IINPSLLFLDEPTSGL-DSTTALRIVQMLQDIAEAGKTVVTTIHQPSSR--------LFHKFDKLILLGKGSLLYFGKAS 218 (583)
Q Consensus 148 ~~~p~illLDEPtsgL-D~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~--------i~~~~D~v~~L~~G~iv~~G~~~ 218 (583)
..+|+++++|||+.+| |+..+..+.+.++++++.|.+++++||++... +.+.||..++|.+|++...|+.
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~~- 728 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPGTR- 728 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccchH-
Confidence 4799999999999999 79999999999999998899999999998642 1367999999999998776643
Q ss_pred hHHHHHHhcCC
Q 007952 219 EAMAYFSSIGC 229 (583)
Q Consensus 219 ~~~~~f~~~g~ 229 (583)
++++.+|+
T Consensus 729 ---~~~~~~gl 736 (818)
T PRK13830 729 ---EFYERIGF 736 (818)
T ss_pred ---HHHHHcCC
Confidence 24455553
No 452
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.03 E-value=7e-10 Score=102.92 Aligned_cols=64 Identities=20% Similarity=0.207 Sum_probs=48.5
Q ss_pred ccChHHHHHHHHHHHHHhCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChH
Q 007952 132 GVSGGERKRVCIGNEIIINPSLLFLDEPTS----------GLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSR 195 (583)
Q Consensus 132 ~LSgGerqRv~ia~~L~~~p~illLDEPts----------gLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~ 195 (583)
..+.++.++...+.+...+|+++++|||++ +.|......+.+++....+.+.|+|+++|.+...
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 67 DPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSGD 140 (165)
T ss_pred CCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCcc
Confidence 345566667788888889999999999994 5555556666666666555699999999987553
No 453
>PRK01156 chromosome segregation protein; Provisional
Probab=98.97 E-value=1.6e-09 Score=128.53 Aligned_cols=77 Identities=23% Similarity=0.325 Sum_probs=66.7
Q ss_pred cCcccChHHHHHHHH------HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HC-C-cEEEEEecCCChHHHhh
Q 007952 129 FVRGVSGGERKRVCI------GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA-EA-G-KTVVTTIHQPSSRLFHK 199 (583)
Q Consensus 129 ~~~~LSgGerqRv~i------a~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~-~~-g-~tii~~~H~~~~~i~~~ 199 (583)
.+..||||||+|++| |++++.+|++++|||||+|||+.....+.+.++... .. | .+||++||++. ..+.
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~--~~~~ 875 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRE--LLSV 875 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchH--HHHh
Confidence 467899999999976 488999999999999999999999999999998654 33 3 48999999964 4578
Q ss_pred cCeEEEEc
Q 007952 200 FDKLILLG 207 (583)
Q Consensus 200 ~D~v~~L~ 207 (583)
||+++.+.
T Consensus 876 ~d~ii~~~ 883 (895)
T PRK01156 876 ADVAYEVK 883 (895)
T ss_pred cCeEEEEE
Confidence 99999997
No 454
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.96 E-value=2.6e-09 Score=114.47 Aligned_cols=156 Identities=19% Similarity=0.195 Sum_probs=107.7
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHHH
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKET 86 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~ 86 (583)
.++++++ +.+.+||.++|+|+||+|||||+++|++... +..|.|.+.|+.. .+|.|.
T Consensus 144 iraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~--~~~gvI~~iGerg--------------------~ev~e~ 200 (432)
T PRK06793 144 IKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAK--ADINVISLVGERG--------------------REVKDF 200 (432)
T ss_pred CEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCC--CCeEEEEeCCCCc--------------------ccHHHH
Confidence 3577774 9999999999999999999999999999643 4556665554321 366665
Q ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHH-------hCCCEEEEeCC
Q 007952 87 LTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEII-------INPSLLFLDEP 159 (583)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~-------~~p~illLDEP 159 (583)
+... +..-|+.+. ..+ .....-|.|+|+|+..+.+.+ .++-++++|||
T Consensus 201 ~~~~---------------------l~~~gl~~t--vvv--~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDsl 255 (432)
T PRK06793 201 IRKE---------------------LGEEGMRKS--VVV--VATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSV 255 (432)
T ss_pred HHHH---------------------hhhccccee--EEE--EECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecch
Confidence 5421 111122210 011 123578999999999998887 78999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcCh
Q 007952 160 TSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 217 (583)
Q Consensus 160 tsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~ 217 (583)
|+..|+. .++-..+.+....|.+..+.+|. ..+.+ |.-...+|.+...++.
T Consensus 256 Tr~a~A~--reisl~~~e~p~~G~~~~~~s~l--~~L~E---Rag~~~~GSiT~~~tv 306 (432)
T PRK06793 256 TRFADAR--RSVDIAVKELPIGGKTLLMESYM--KKLLE---RSGKTQKGSITGIYTV 306 (432)
T ss_pred HHHHHHH--HHHHHHhcCCCCCCeeeeeeccc--hhHHH---HhccCCCcceEEEEEE
Confidence 9999996 55555555655458888888884 23444 4434578888776654
No 455
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.95 E-value=4e-09 Score=102.67 Aligned_cols=57 Identities=23% Similarity=0.347 Sum_probs=42.5
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEc
Q 007952 142 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG 207 (583)
Q Consensus 142 ~ia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~ 207 (583)
+++++|..+|+++++|||. |..+...++ +.+..|..++.|+|.++. .+..||++.+.
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~~~~~l----~~a~~G~~v~~t~Ha~~~--~~~~~Rl~~l~ 122 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLETIRLAL----TAAETGHLVMSTLHTNSA--AKTIDRIIDVF 122 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHHHHHHH----HHHHcCCEEEEEecCCcH--HHHHhHHHhhc
Confidence 4778888999999999996 555433333 345679999999999753 46788886663
No 456
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.94 E-value=7.4e-09 Score=103.39 Aligned_cols=162 Identities=19% Similarity=0.205 Sum_probs=97.1
Q ss_pred eece-EEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHHHHH
Q 007952 10 LNGI-TGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLT 88 (583)
Q Consensus 10 L~~v-s~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~l~ 88 (583)
|+.+ .+=+++|.++.|.|++|+|||||...++-... . .| +++.|+..+. +..+.+.
T Consensus 14 LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~--~-~g--------------~~~~y~~~e~------~~~~~~~ 70 (234)
T PRK06067 14 LDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGAL--K-QG--------------KKVYVITTEN------TSKSYLK 70 (234)
T ss_pred HHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHH--h-CC--------------CEEEEEEcCC------CHHHHHH
Confidence 4443 56799999999999999999999998862110 1 11 2344555432 3333332
Q ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHh--CCCEEEEeCCCCC---C
Q 007952 89 YAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIII--NPSLLFLDEPTSG---L 163 (583)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~--~p~illLDEPtsg---L 163 (583)
-...+. +.- ++.+. -|.-...+... ......|.++++.+.....++. +|+++++||||+. .
T Consensus 71 ~~~~~g----~~~-------~~~~~-~g~l~i~~~~~--~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~ 136 (234)
T PRK06067 71 QMESVK----IDI-------SDFFL-WGYLRIFPLNT--EGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYA 136 (234)
T ss_pred HHHHCC----CCh-------hHHHh-CCCceEEeccc--cccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcC
Confidence 221111 110 01100 01101111000 0122356788999999999997 9999999999964 4
Q ss_pred CHHHHHHHHHHHHHHHHCCcEEEEEecCCCh------HHHhhcCeEEEEcC
Q 007952 164 DSTTALRIVQMLQDIAEAGKTVVTTIHQPSS------RLFHKFDKLILLGK 208 (583)
Q Consensus 164 D~~~~~~i~~~l~~l~~~g~tii~~~H~~~~------~i~~~~D~v~~L~~ 208 (583)
|.....++++.++.++++|.|+++++|+... .+..++|-++.|+.
T Consensus 137 ~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l~DgvI~L~~ 187 (234)
T PRK06067 137 EEDDILNFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRSICDVYLKLRA 187 (234)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhheEEEEEEEe
Confidence 5555556666677777789999999998653 13456677777753
No 457
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.90 E-value=1.7e-09 Score=131.56 Aligned_cols=77 Identities=18% Similarity=0.284 Sum_probs=67.6
Q ss_pred ccCcccChHHHHHHHHHHHHH----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeE
Q 007952 128 SFVRGVSGGERKRVCIGNEII----INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKL 203 (583)
Q Consensus 128 ~~~~~LSgGerqRv~ia~~L~----~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v 203 (583)
..+..||||||+|++||++++ .+|++++|||||+|||+.+...+.++|+++++ +.+||++||++.. ...||++
T Consensus 1085 ~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~-~~~~i~~sh~~~~--~~~~d~~ 1161 (1179)
T TIGR02168 1085 QNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK-NTQFIVITHNKGT--MEVADQL 1161 (1179)
T ss_pred ccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc-CCEEEEEEcChhH--HHHhhhH
Confidence 356789999999999999985 57799999999999999999999999999875 5789999999763 5789999
Q ss_pred EEEc
Q 007952 204 ILLG 207 (583)
Q Consensus 204 ~~L~ 207 (583)
+.+.
T Consensus 1162 ~~~~ 1165 (1179)
T TIGR02168 1162 YGVT 1165 (1179)
T ss_pred eeee
Confidence 7664
No 458
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.89 E-value=2.3e-09 Score=131.26 Aligned_cols=70 Identities=20% Similarity=0.287 Sum_probs=61.4
Q ss_pred CcccChHHHH------HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-----CCcEEEEEecCCChHHHh
Q 007952 130 VRGVSGGERK------RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-----AGKTVVTTIHQPSSRLFH 198 (583)
Q Consensus 130 ~~~LSgGerq------Rv~ia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~-----~g~tii~~~H~~~~~i~~ 198 (583)
...||||||| |++||++++.+|++|+|||||+|||+.+...+.+.|.++.. .|.|||++||++. .+..
T Consensus 1197 ~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~-~~~~ 1275 (1311)
T TIGR00606 1197 RGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDED-FVEL 1275 (1311)
T ss_pred CCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHH-HHHH
Confidence 3589999999 99999999999999999999999999999999999988742 3789999999965 3555
Q ss_pred hc
Q 007952 199 KF 200 (583)
Q Consensus 199 ~~ 200 (583)
+|
T Consensus 1276 ~~ 1277 (1311)
T TIGR00606 1276 LG 1277 (1311)
T ss_pred Hh
Confidence 54
No 459
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.89 E-value=1.3e-08 Score=101.92 Aligned_cols=136 Identities=21% Similarity=0.386 Sum_probs=86.2
Q ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECC-ccCCccccccEEEEccCCCCCCCCCHHHHHHHHHHcCCCCC
Q 007952 20 GEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND-HPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNT 98 (583)
Q Consensus 20 Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g-~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~l~~~~~~~~~~~ 98 (583)
|++..|+||+|+|||||.-.++=.. ..|.=+.++ ... ....++-|+.=|+
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~v----a~G~~~~g~~~~~--~~~~~Vlyi~~Ed----------------------- 51 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAM----ALGKNLFGGGLKV--TEPGRVVYLSAED----------------------- 51 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHH----hcCccccCCcccc--CCCceEEEEECCC-----------------------
Confidence 6788999999999999998887322 122211111 111 1123455555332
Q ss_pred CCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHH----------------HHHhCCCEEEEeCCCC-
Q 007952 99 LTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGN----------------EIIINPSLLFLDEPTS- 161 (583)
Q Consensus 99 ~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~----------------~L~~~p~illLDEPts- 161 (583)
+.++..+|+..+...+++.+..+... ..+|+.|++.+++ ....+|+++++| |++
T Consensus 52 -~~~~i~~Rl~~i~~~~~~~~~~~rl~-------~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl~~ 122 (239)
T cd01125 52 -PREEIHRRLEAILQHLEPDDAGDRLF-------IDSGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PLVS 122 (239)
T ss_pred -CHHHHHHHHHHHHhhcCCcCcccceE-------EeccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-ChHH
Confidence 22334455666666666544333221 2245555555443 235799999999 765
Q ss_pred -----CCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCC
Q 007952 162 -----GLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPS 193 (583)
Q Consensus 162 -----gLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~ 193 (583)
.+|+.....+++.|++++++ |.||++++|...
T Consensus 123 ~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 123 FHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRK 160 (239)
T ss_pred hCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence 47999999999999999865 899999999863
No 460
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.81 E-value=1.3e-08 Score=110.65 Aligned_cols=151 Identities=22% Similarity=0.254 Sum_probs=93.4
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHHHH
Q 007952 8 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETL 87 (583)
Q Consensus 8 ~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~l 87 (583)
.++++.+..++.|++++++||||+||||++..|++... ...|. ++++++.+|. ...++.|+|
T Consensus 244 ~~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~--~~~G~-------------~kV~LI~~Dt---~RigA~EQL 305 (484)
T PRK06995 244 PVLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCV--MRHGA-------------SKVALLTTDS---YRIGGHEQL 305 (484)
T ss_pred hhccCccccccCCcEEEEECCCCccHHHHHHHHHHHHH--HhcCC-------------CeEEEEeCCc---cchhHHHHH
Confidence 34667777788999999999999999999999998542 12221 3588888876 347899999
Q ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHH-HHHHHHHHHhCC-----CEEEEeCCCC
Q 007952 88 TYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK-RVCIGNEIIINP-----SLLFLDEPTS 161 (583)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerq-Rv~ia~~L~~~p-----~illLDEPts 161 (583)
.+.+....- +.....+..+...+..++.+....++ .+...+++. .+.-..+++.++ .+|+||.++.
T Consensus 306 r~~AeilGV---pv~~~~~~~Dl~~aL~~L~d~d~VLI-----DTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~ 377 (484)
T PRK06995 306 RIYGKILGV---PVHAVKDAADLRLALSELRNKHIVLI-----DTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSH 377 (484)
T ss_pred HHHHHHhCC---CeeccCCchhHHHHHHhccCCCeEEe-----CCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCc
Confidence 987665321 11111222333445556666544433 333323322 234444555555 6899999998
Q ss_pred CCCHHHHHHHHHHHHHHHHCCcEEEEEec
Q 007952 162 GLDSTTALRIVQMLQDIAEAGKTVVTTIH 190 (583)
Q Consensus 162 gLD~~~~~~i~~~l~~l~~~g~tii~~~H 190 (583)
+ ..+.+.++.....+.+-++.|+
T Consensus 378 ~------~~l~~i~~~f~~~~~~g~IlTK 400 (484)
T PRK06995 378 G------DTLNEVVQAYRGPGLAGCILTK 400 (484)
T ss_pred H------HHHHHHHHHhccCCCCEEEEeC
Confidence 7 3445555555545555444454
No 461
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.79 E-value=3.6e-09 Score=113.32 Aligned_cols=52 Identities=21% Similarity=0.268 Sum_probs=44.1
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS 61 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~ 61 (583)
+.+|++||+++++||+++|+|||||||||||+ +|... ++.+|+|.++|.++.
T Consensus 19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~-~~sGg~I~ldg~~~~ 70 (504)
T TIGR03238 19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRK-FSEGYEFFLDATHSF 70 (504)
T ss_pred HHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCC-CCCCCEEEECCEECC
Confidence 46899999999999999999999999999999 56543 444458999998764
No 462
>PRK02224 chromosome segregation protein; Provisional
Probab=98.79 E-value=1.3e-08 Score=120.61 Aligned_cols=77 Identities=32% Similarity=0.461 Sum_probs=66.9
Q ss_pred CcccChHHHH------HHHHHHHHHhC-----C-CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCc-EEEEEecCCChHH
Q 007952 130 VRGVSGGERK------RVCIGNEIIIN-----P-SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGK-TVVTTIHQPSSRL 196 (583)
Q Consensus 130 ~~~LSgGerq------Rv~ia~~L~~~-----p-~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~-tii~~~H~~~~~i 196 (583)
+..||||||+ |++++++++.+ | +++++||||++||+.....+.+.|+++.+.|. +||++||++. .
T Consensus 779 ~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~--~ 856 (880)
T PRK02224 779 PEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDE--L 856 (880)
T ss_pred hhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChH--H
Confidence 5789999999 88999888863 3 67999999999999999999999999987665 8999999974 3
Q ss_pred HhhcCeEEEEcC
Q 007952 197 FHKFDKLILLGK 208 (583)
Q Consensus 197 ~~~~D~v~~L~~ 208 (583)
...+|+++.+.+
T Consensus 857 ~~~ad~~~~~~~ 868 (880)
T PRK02224 857 VGAADDLVRVEK 868 (880)
T ss_pred HHhcCeeEEeec
Confidence 467999999964
No 463
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.78 E-value=9.1e-09 Score=125.30 Aligned_cols=77 Identities=17% Similarity=0.242 Sum_probs=68.2
Q ss_pred cCcccChHHHHHHHHHHHHHh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEE
Q 007952 129 FVRGVSGGERKRVCIGNEIII----NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLI 204 (583)
Q Consensus 129 ~~~~LSgGerqRv~ia~~L~~----~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~ 204 (583)
.+..||||||++++||++++. +|++++||||++|||+.....+.++|+++++ +.++|++||++. ....||+++
T Consensus 1071 ~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~-~~~~i~~t~~~~--~~~~~d~~~ 1147 (1164)
T TIGR02169 1071 RLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG-EAQFIVVSLRSP--MIEYADRAI 1147 (1164)
T ss_pred cchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC-CCeEEEEECcHH--HHHhcceeE
Confidence 467899999999999999985 6899999999999999999999999999865 578999999964 568999998
Q ss_pred EEcC
Q 007952 205 LLGK 208 (583)
Q Consensus 205 ~L~~ 208 (583)
.+..
T Consensus 1148 ~~~~ 1151 (1164)
T TIGR02169 1148 GVTM 1151 (1164)
T ss_pred eEEE
Confidence 8753
No 464
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.75 E-value=2.4e-07 Score=82.62 Aligned_cols=60 Identities=30% Similarity=0.320 Sum_probs=46.3
Q ss_pred cccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHH------HHHHHHCCcEEEEEec
Q 007952 131 RGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQM------LQDIAEAGKTVVTTIH 190 (583)
Q Consensus 131 ~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~~~~~i~~~------l~~l~~~g~tii~~~H 190 (583)
....+++..+..+.++--.+|+++++||+..-.+.......... .......+..+|+++|
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 124 (148)
T smart00382 59 ASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTN 124 (148)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeC
Confidence 35677888888888887778999999999999999988877652 2222334778888888
No 465
>COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms]
Probab=98.73 E-value=2.9e-06 Score=85.77 Aligned_cols=167 Identities=20% Similarity=0.292 Sum_probs=117.1
Q ss_pred hhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHH-Hh
Q 007952 405 ERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQGLGLAIG-AI 483 (583)
Q Consensus 405 er~v~~rE~~~~~Y~~~ay~la~~l~~lP~~~~~~~~~~~i~Y~~~gl~~~~~~f~~~~~~~~l~~~~~~~~g~~i~-~~ 483 (583)
++..+.|=..+...+ ..+++++.+...-...+...+...++.+..|.. ....++.......+..+...++|.+++ ..
T Consensus 116 ~~g~~~~~~~sp~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~ 193 (286)
T COG0842 116 EFGTLERLLVSPVSR-LFILLGKIVPYLVVASLIAGLVLLVIAFLLGVP-FLGSLLLLLLLLLLLLLATVALGLLLSTFA 193 (286)
T ss_pred hhCcHHHHHhCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444433 456777777766666666666666666666632 223344445555566677777887666 35
Q ss_pred cCCHHHHHHHHHHHHHHHHHHhhcccC--CCccchhhhhccCHHHHHHHHHHHHHcCCCCCCCCCcccCcchhhHHHHHH
Q 007952 484 LMDLKKATTLASVTIMTFMLAGGYFVQ--EVPVFISWIRYMSFNFHTYKILLKIQYADISPIVNGMRTDSGFREVCALVA 561 (583)
Q Consensus 484 ~~~~~~A~~~~~~~~~~~~l~~Gf~i~--~ip~~~~Wl~yis~~~ya~~~l~~~ef~~~~~~~~g~~~~~~~~~~~~l~~ 561 (583)
.++.+.+..++.++..++.+++|.+.| .+|.|++|+.++.|..|+.+++-.....+.. .+..+.++++|++
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~l~g~~~p~~~~p~~~~~i~~~~P~t~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~ 266 (286)
T COG0842 194 KSQLQCASAVGNLLILPLGFLSGVFFPLELLPAWLQGISYINPLTYAIDALRYVYLGGWR-------NDGIWISLLILLL 266 (286)
T ss_pred hhHHHHHHHHHHHHHHHHHHHccccCchhhhHHHHHHHHHHccHHHHHHHHHHHHhCCCc-------hhhHHHHHHHHHH
Confidence 566777778887888899999999998 7999999999999999999997766543321 1125667889999
Q ss_pred HHHHHHHHHHHHHHHhhhc
Q 007952 562 MVFGYRLLAYLSLRKMKLH 580 (583)
Q Consensus 562 ~~~~~~~l~~~~L~~~~~~ 580 (583)
+.+++.+++...+|+.+++
T Consensus 267 ~~~v~~~~~~~~~~~~~~~ 285 (286)
T COG0842 267 FAVVFLLLGLLLLRRRRKL 285 (286)
T ss_pred HHHHHHHHHHHHHHHhhhc
Confidence 9999999999999886653
No 466
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.68 E-value=1.6e-07 Score=99.21 Aligned_cols=56 Identities=21% Similarity=0.355 Sum_probs=42.5
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEE
Q 007952 142 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL 206 (583)
Q Consensus 142 ~ia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L 206 (583)
.+..+|-.+|+++++||+. |+.++...++ .+..|.+++.|+|..+. ....+|++-|
T Consensus 187 ~l~~~lr~~pd~i~vgEir---d~~~~~~~l~----aa~tGh~v~~T~Ha~~~--~~~~~Rl~~~ 242 (343)
T TIGR01420 187 ALRAALREDPDVILIGEMR---DLETVELALT----AAETGHLVFGTLHTNSA--AQTIERIIDV 242 (343)
T ss_pred HHHHhhccCCCEEEEeCCC---CHHHHHHHHH----HHHcCCcEEEEEcCCCH--HHHHHHHHHh
Confidence 4667888999999999997 8888765444 35679999999998543 4566777554
No 467
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.61 E-value=1.1e-06 Score=103.40 Aligned_cols=52 Identities=21% Similarity=0.233 Sum_probs=47.6
Q ss_pred HHHHHHhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHHCCcEEEEEecCCCh
Q 007952 143 IGNEIIINPSLLFLDEPTSGL-DSTTALRIVQMLQDIAEAGKTVVTTIHQPSS 194 (583)
Q Consensus 143 ia~~L~~~p~illLDEPtsgL-D~~~~~~i~~~l~~l~~~g~tii~~~H~~~~ 194 (583)
|++++..+|+++++|||+.+| |+..+..+.+.++.+++.|.+++++||++..
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d 732 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSD 732 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 567778899999999999999 7999999999999999889999999999764
No 468
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.59 E-value=6.4e-07 Score=96.96 Aligned_cols=176 Identities=18% Similarity=0.207 Sum_probs=107.6
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCC---c---------cccccEEEEcc
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---K---------SLKSKIGFVTQ 73 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~---~---------~~~~~i~yv~Q 73 (583)
...+++++ +.+.+||.++|+|+||+|||||+++|+|... +..|.+...|..-. + .+++.+.++.+
T Consensus 150 Gi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~--~~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~ 226 (440)
T TIGR01026 150 GVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTE--ADVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVAT 226 (440)
T ss_pred eeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCC--CCEEEEEEEeecchHHHHHHHHHhcccccceEEEEEEC
Confidence 35789999 9999999999999999999999999999643 44566655554321 1 12233333333
Q ss_pred CCCCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCE
Q 007952 74 DDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSL 153 (583)
Q Consensus 74 ~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~i 153 (583)
.+. ++.+-..- ...--.+.|.+..-|- |..+ ....++- .|+|+-- ==
T Consensus 227 ~d~-----~p~~r~~~------------~~~a~t~AE~frd~G~----~Vll---~~DslTr-------~A~A~RE--is 273 (440)
T TIGR01026 227 SDQ-----SPLLRLKG------------AYVATAIAEYFRDQGK----DVLL---LMDSVTR-------FAMAQRE--IG 273 (440)
T ss_pred CCC-----CHHHHHHH------------HHHHHHHHHHHHHCCC----CEEE---EEeChHH-------HHHHHHH--HH
Confidence 222 12111100 0111122333333342 2221 1123331 1111100 00
Q ss_pred EEEeCC--CCCCCHHHHHHHHHHHHHHHHCCc-------EEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhH
Q 007952 154 LFLDEP--TSGLDSTTALRIVQMLQDIAEAGK-------TVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 220 (583)
Q Consensus 154 llLDEP--tsgLD~~~~~~i~~~l~~l~~~g~-------tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 220 (583)
+.+.|| +.|+|+.....+-+++.+....+. ||++..||..+ ..+|++.-+.+|+++..++.++.
T Consensus 274 l~~ge~P~~~Gypp~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~~d---pi~d~~~~i~dG~ivLsr~la~~ 346 (440)
T TIGR01026 274 LAAGEPPATKGYTPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDMNE---PIADSVRGILDGHIVLSRALAQR 346 (440)
T ss_pred HhcCCCCcccccChhHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCCCc---chhhhhccccceEEEEecchhhC
Confidence 234565 559999999999999999876666 78888888643 46899999999999999887764
No 469
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.58 E-value=8.2e-08 Score=102.06 Aligned_cols=60 Identities=22% Similarity=0.296 Sum_probs=55.3
Q ss_pred cccChHHHHHHHHHHHHHh---------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCC
Q 007952 131 RGVSGGERKRVCIGNEIII---------NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPS 193 (583)
Q Consensus 131 ~~LSgGerqRv~ia~~L~~---------~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~ 193 (583)
..+|.||+|++.||..|+. +|+|++||||+++||+..+..+++.|++. |.++++|+|++.
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~---~~qv~it~~~~~ 342 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL---GVQVFVTAISLD 342 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc---CCEEEEEecChh
Confidence 4689999999999999999 99999999999999999999999999764 679999999864
No 470
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.56 E-value=6.7e-08 Score=103.79 Aligned_cols=174 Identities=19% Similarity=0.232 Sum_probs=107.7
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCc--ccEEEECCccCCc----------cccccEEEEcc
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTV--GGSITYNDHPYSK----------SLKSKIGFVTQ 73 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~--~G~I~~~g~~~~~----------~~~~~i~yv~Q 73 (583)
...+++++ +.+.+||.++|+|+||+|||||+++|+|... +.. -|.|-.+|.++.+ ..+..+++++|
T Consensus 142 Gi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~-~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~ 219 (434)
T PRK07196 142 GVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQ-ADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPA 219 (434)
T ss_pred ceeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccC-CCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecC
Confidence 35789999 9999999999999999999999999999653 221 2455555554421 12456899999
Q ss_pred CCCCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCE
Q 007952 74 DDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSL 153 (583)
Q Consensus 74 ~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~i 153 (583)
++..+..+++.|++.+.+....... +.|--+++ .++..+.. -+++ ++
T Consensus 220 d~s~~~rl~a~e~a~~iAEyfr~~g-------~~Vll~~D--sltr~a~A------~REi--------sl---------- 266 (434)
T PRK07196 220 DESPLMRIKATELCHAIATYYRDKG-------HDVLLLVD--SLTRYAMA------QREI--------AL---------- 266 (434)
T ss_pred CCChhhhHHHHHHHHHHHHHhhhcc-------CCEEEeec--chhHHHhh------hhHH--------HH----------
Confidence 9999999999999987665421110 00000000 01111100 0111 11
Q ss_pred EEEeCC--CCCCCHHHHHHHHHHHHHHHH---CC-cEEEEEecCCChHHHh-hcCeEEEEcCCeEEEEc
Q 007952 154 LFLDEP--TSGLDSTTALRIVQMLQDIAE---AG-KTVVTTIHQPSSRLFH-KFDKLILLGKGSLLYFG 215 (583)
Q Consensus 154 llLDEP--tsgLD~~~~~~i~~~l~~l~~---~g-~tii~~~H~~~~~i~~-~~D~v~~L~~G~iv~~G 215 (583)
.+.|| +.|-.+..-..+-+++.+..+ .| .|.+.+..-+..++-+ ..|.+.-+-||+++..-
T Consensus 267 -~~ge~P~~~Gyp~svf~~l~~l~ERag~~~~~GSIT~~~tVl~~~dD~~dpi~d~~~~ilDG~ivLsr 334 (434)
T PRK07196 267 -SLGEPPATKGYPPSAFSIIPRLAESAGNSSGNGTMTAIYTVLAEGDDQQDPIVDCARAVLDGHIVLSR 334 (434)
T ss_pred -hcCCCCcccCcCHHHHHHhHHHHHHhhcCCCCEEeeeeeEEEccCCCCCCchhHhhhhhcceEEEEcH
Confidence 12343 347777777777777776532 23 4777776655444333 46788878899998743
No 471
>TIGR01248 drrC daunorubicin resistance protein C. The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters.
Probab=98.55 E-value=3.3e-06 Score=78.65 Aligned_cols=129 Identities=13% Similarity=0.043 Sum_probs=91.7
Q ss_pred HHHhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCCh--HHHHHHHHHHHHHHHHHHHHHHH
Q 007952 402 FPQERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGA--GPFFLSMLTVFLSIVAAQGLGLA 479 (583)
Q Consensus 402 ~~~er~v~~rE~~~~~Y~~~ay~la~~l~~lP~~~~~~~~~~~i~Y~~~gl~~~~--~~f~~~~~~~~l~~~~~~~~g~~ 479 (583)
.-.|+-++.|-+..-. ++..++++|++...-..+++.++..++.++ .|.+.+. ...+.+++...+.......++..
T Consensus 14 ~dr~~G~~~~l~~tP~-~~~~~~~g~~l~~~~~~~~~~~ii~~v~~~-~g~~~~~~~~~~~~~~~~~~l~~~~f~~l~~~ 91 (152)
T TIGR01248 14 IDREIGLLSRLWVLPI-HRASALLARIIAETIRAFIGTILILAIALA-LGFRFRNGVAAALLFLLIPSIFGIAFAALVMA 91 (152)
T ss_pred HHHHhHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888887777 678999999999998988888777777754 3877653 22223333333344445555556
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHhhcccC--CCccchhhhhccCHHHHHHHHHH
Q 007952 480 IGAILMDLKKATTLASVTIMTFMLAGGYFVQ--EVPVFISWIRYMSFNFHTYKILL 533 (583)
Q Consensus 480 i~~~~~~~~~A~~~~~~~~~~~~l~~Gf~i~--~ip~~~~Wl~yis~~~ya~~~l~ 533 (583)
++...++.+. .....++.+|+.+.+|.+.| ++|+|++|+.+++|..|+.+++=
T Consensus 92 ~a~~~~~~~~-~~~~~~v~~pl~flsg~~~P~~~mP~wlq~ia~~~Plt~~~~~~R 146 (152)
T TIGR01248 92 MALRKEGRFA-MEALELAQAAAAFLNPGATPIKLFPDWAQPLIAHQPISPAIEACA 146 (152)
T ss_pred HHHHcCCHHH-HHHHHHHHHHHHHHhhhhcCHHhCcHHHHHHHhhCCccHHHHHHH
Confidence 5554555443 33446667788888888888 89999999999999999999863
No 472
>PRK14079 recF recombination protein F; Provisional
Probab=98.55 E-value=1.4e-07 Score=99.76 Aligned_cols=78 Identities=17% Similarity=0.228 Sum_probs=64.0
Q ss_pred cccChHHHHHHHHHHHHH---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcC
Q 007952 131 RGVSGGERKRVCIGNEII---------INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFD 201 (583)
Q Consensus 131 ~~LSgGerqRv~ia~~L~---------~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D 201 (583)
.-+|+||+|++.+|..|+ .+|++++||||+++||...+..+.+.|.+. ..++|.+++.| ..+|
T Consensus 262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~---~q~~it~t~~~-----~~~~ 333 (349)
T PRK14079 262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASL---PQAIVAGTEAP-----PGAA 333 (349)
T ss_pred HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcC---CcEEEEcCCCC-----CCCc
Confidence 457999999999999998 899999999999999999999999888653 23555555433 4699
Q ss_pred eEEEEcCCeEEEEcC
Q 007952 202 KLILLGKGSLLYFGK 216 (583)
Q Consensus 202 ~v~~L~~G~iv~~G~ 216 (583)
+++.+.+|++.-..|
T Consensus 334 ~~~~~~~~~~~~~~~ 348 (349)
T PRK14079 334 LTLRIEAGVFTPEAP 348 (349)
T ss_pred eEEEEeccEecCCCC
Confidence 999999998754443
No 473
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=98.55 E-value=2e-08 Score=99.83 Aligned_cols=33 Identities=27% Similarity=0.454 Sum_probs=27.7
Q ss_pred eeece-EEEEeCCeEEEEECCCCCcHHHHHHHHh
Q 007952 9 ILNGI-TGSVNPGEVLALMGPSGSGKTTLLNLLS 41 (583)
Q Consensus 9 iL~~v-s~~i~~Ge~~~i~G~nGaGKSTLl~~l~ 41 (583)
-|+++ .+=+++|++++|.||+|+|||||...++
T Consensus 8 ~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~ 41 (229)
T TIGR03881 8 GLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFA 41 (229)
T ss_pred hHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHH
Confidence 35553 5679999999999999999999988665
No 474
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.54 E-value=2.4e-07 Score=109.99 Aligned_cols=79 Identities=27% Similarity=0.417 Sum_probs=70.7
Q ss_pred ccCcccChHHHHHHHHHHHHH------hC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhh
Q 007952 128 SFVRGVSGGERKRVCIGNEII------IN--PSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHK 199 (583)
Q Consensus 128 ~~~~~LSgGerqRv~ia~~L~------~~--p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~ 199 (583)
..+..|||||+-.++||.+|+ .+ -+.+||||||..||+.+...+++.|..+...+.+|++|||++ ++.+.
T Consensus 811 r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~e--el~e~ 888 (908)
T COG0419 811 RPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVE--ELKER 888 (908)
T ss_pred cccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChH--HHHHh
Confidence 367899999999999888875 35 699999999999999999999999999998899999999985 56789
Q ss_pred cCeEEEEcC
Q 007952 200 FDKLILLGK 208 (583)
Q Consensus 200 ~D~v~~L~~ 208 (583)
+|+++.++.
T Consensus 889 ~~~~i~V~k 897 (908)
T COG0419 889 ADVRIRVKK 897 (908)
T ss_pred CCeEEEEEe
Confidence 999998864
No 475
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.54 E-value=2.5e-08 Score=110.07 Aligned_cols=166 Identities=18% Similarity=0.195 Sum_probs=98.0
Q ss_pred eeece-EEEEeCCeEEEEECCCCCcHHHHHHHHh--CCCCCCCcccEEEECCccCCccc---cccEEEEccCCCCCCCCC
Q 007952 9 ILNGI-TGSVNPGEVLALMGPSGSGKTTLLNLLS--GRLMEPTVGGSITYNDHPYSKSL---KSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 9 iL~~v-s~~i~~Ge~~~i~G~nGaGKSTLl~~l~--g~~~~~~~~G~I~~~g~~~~~~~---~~~i~yv~Q~~~~~~~lT 82 (583)
-||.+ .+=+++|..+.|.||+|||||||..-.+ |... .-+..+++......+++ .+..|+-.++..--.
T Consensus 9 gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~--~ge~~lyvs~eE~~~~l~~~~~~~G~~~~~~~~~g--- 83 (484)
T TIGR02655 9 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIH--FDEPGVFVTFEESPQDIIKNARSFGWDLQKLVDEG--- 83 (484)
T ss_pred hHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh--CCCCEEEEEEecCHHHHHHHHHHcCCCHHHHhhcC---
Confidence 35554 5678999999999999999999988763 3211 01234455433222211 122333333110000
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHH--HHHHhCCCEEEEeCCC
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG--NEIIINPSLLFLDEPT 160 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia--~~L~~~p~illLDEPt 160 (583)
++.+ ... .+. .....+++.+++++..+.. .+.+|+|++|||.|+ .++..+|+..
T Consensus 84 ---~l~~---~~~---~~~----~~~~~~~~~~~l~~~l~~i-----~~~ls~g~~qRVvIDSl~aL~~~~~~~------ 139 (484)
T TIGR02655 84 ---KLFI---LDA---SPD----PEGQDVVGGFDLSALIERI-----NYAIRKYKAKRVSIDSVTAVFQQYDAV------ 139 (484)
T ss_pred ---ceEE---Eec---Cch----hccccccccCCHHHHHHHH-----HHHHHHhCCcEEEEeehhHhhhhcCch------
Confidence 0000 000 000 0011123444444444432 458999999999999 6666666543
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChH-------H-HhhcCeEEEEc
Q 007952 161 SGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSR-------L-FHKFDKLILLG 207 (583)
Q Consensus 161 sgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~-------i-~~~~D~v~~L~ 207 (583)
...+..+.++++.+++.|+|+|+++|++... + ..++|.|+.|+
T Consensus 140 ----~~~r~~l~~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 140 ----SVVRREIFRLVARLKQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred ----HHHHHHHHHHHHHHHHCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 4677889999999988899999999986421 1 45789999986
No 476
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.53 E-value=2.2e-07 Score=89.46 Aligned_cols=81 Identities=25% Similarity=0.185 Sum_probs=59.7
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccC-CccccccEEEEccCC--CCCCCCCHHHHH
Q 007952 11 NGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY-SKSLKSKIGFVTQDD--VLFPHLTVKETL 87 (583)
Q Consensus 11 ~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~-~~~~~~~i~yv~Q~~--~~~~~lTv~e~l 87 (583)
+=+.+.+++|+.++|+||||||||||+++|+|..+ +..|.|.+++..- ....+..++++.|.+ ...+..|+.+.+
T Consensus 16 ~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~--~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 93 (186)
T cd01130 16 AYLWLAVEARKNILISGGTGSGKTTLLNALLAFIP--PDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLL 93 (186)
T ss_pred HHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcC--CCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHH
Confidence 34456788999999999999999999999999653 5679999977432 112234566666554 346778999988
Q ss_pred HHHHHc
Q 007952 88 TYAALL 93 (583)
Q Consensus 88 ~~~~~~ 93 (583)
..+.+.
T Consensus 94 ~~~lR~ 99 (186)
T cd01130 94 RSALRM 99 (186)
T ss_pred HHHhcc
Confidence 876554
No 477
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=98.50 E-value=2.1e-07 Score=109.03 Aligned_cols=138 Identities=19% Similarity=0.203 Sum_probs=85.2
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHHH
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKET 86 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~ 86 (583)
..|=+|+++. +.+.++.|.|||++||||+||.++-...- ..-| .|||-+..- +++.
T Consensus 595 ~~vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~il-Aq~G-----------------~~VPa~~a~---i~~~-- 650 (854)
T PRK05399 595 PFVPNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVLL-AQIG-----------------SFVPAESAR---IGIV-- 650 (854)
T ss_pred ceEecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHHH-HhcC-----------------CceeccceE---eccc--
Confidence 3455677777 66789999999999999999998742100 0011 233332211 1111
Q ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHh--CCCEEEEeCC---CC
Q 007952 87 LTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIII--NPSLLFLDEP---TS 161 (583)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~--~p~illLDEP---ts 161 (583)
+++...+|-.+ . ...+.|-=+.....++..|-. +++++++||| |+
T Consensus 651 ----------------------d~I~triga~d---~-----i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs 700 (854)
T PRK05399 651 ----------------------DRIFTRIGASD---D-----LASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTS 700 (854)
T ss_pred ----------------------CeeeeccCccc---c-----cccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCC
Confidence 11111222211 1 124677766666666666654 8999999999 88
Q ss_pred CCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCe
Q 007952 162 GLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDK 202 (583)
Q Consensus 162 gLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~ 202 (583)
.+|..+ .....++.+.+. |.+++++||.. ++.+++++
T Consensus 701 ~~dg~a--ia~aile~l~~~~~~~~l~aTH~~--el~~l~~~ 738 (854)
T PRK05399 701 TYDGLS--IAWAVAEYLHDKIGAKTLFATHYH--ELTELEEK 738 (854)
T ss_pred cchhHH--HHHHHHHHHHhcCCceEEEEechH--HHHHHhhh
Confidence 899544 345566666665 58999999983 56677764
No 478
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.39 E-value=3e-07 Score=89.35 Aligned_cols=112 Identities=18% Similarity=0.232 Sum_probs=66.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHHHHHHHHH-cCCCCCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAAL-LRLPNTLT 100 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~l~~~~~-~~~~~~~~ 100 (583)
+++|.||||||||||.+.|++.+. .|. +.++.+|+.. ..++..+....... ...|...
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~----~~~---------------~~v~~~D~~~-~~~~~~~~~~~~~~~~~~~~~~- 59 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLG----NPK---------------VVIISQDSYY-KDLSHEELEERKNNNYDHPDAF- 59 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC----CCC---------------eEEEEecccc-cccccccHHHhccCCCCCCCcc-
Confidence 579999999999999999998541 122 3344444332 22333332221110 1111111
Q ss_pred HHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCH
Q 007952 101 KQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS 165 (583)
Q Consensus 101 ~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~ 165 (583)
..+...+.++.+...+..+. +....|.|++++..+ .+.+|+++++|+|..+.++
T Consensus 60 ---~~~~~~~~l~~l~~~~~~~~-----p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 60 ---DFDLLISHLQDLKNGKSVEI-----PVYDFKTHSRLKETV---TVYPADVIILEGILALYDK 113 (198)
T ss_pred ---cHHHHHHHHHHHHCCCCEec-----cccccccCcccCCce---ecCCCCEEEEechhhccch
Confidence 22334456666655433222 234678888776555 5678999999999999886
No 479
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=98.34 E-value=2.1e-05 Score=92.29 Aligned_cols=48 Identities=21% Similarity=0.243 Sum_probs=43.5
Q ss_pred HHhCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHHCCcEEEEEecCCCh
Q 007952 147 IIINPSLLFLDEPTSGLD-STTALRIVQMLQDIAEAGKTVVTTIHQPSS 194 (583)
Q Consensus 147 L~~~p~illLDEPtsgLD-~~~~~~i~~~l~~l~~~g~tii~~~H~~~~ 194 (583)
+..+|.++++|||...|| +..+..+.+.++.+.+.|..++++||+|..
T Consensus 639 ~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d 687 (800)
T PRK13898 639 LDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVED 687 (800)
T ss_pred hcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 346899999999999999 889999999999998889999999999754
No 480
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.31 E-value=7.8e-07 Score=109.00 Aligned_cols=60 Identities=25% Similarity=0.373 Sum_probs=53.1
Q ss_pred cCcccChHHHHHHH----HHHH--------HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecC
Q 007952 129 FVRGVSGGERKRVC----IGNE--------IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQ 191 (583)
Q Consensus 129 ~~~~LSgGerqRv~----ia~~--------L~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~ 191 (583)
...+||||||||++ +|++ +..+|++++|||||+|||+.+...++++++++ |.++|+++|.
T Consensus 1244 ~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l---~~~~i~~s~~ 1315 (1353)
T TIGR02680 1244 RFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL---DLDFVMTSER 1315 (1353)
T ss_pred cccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh---CCCEEEEccc
Confidence 35799999999996 5644 45799999999999999999999999999887 7889999986
No 481
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.31 E-value=1.6e-06 Score=105.44 Aligned_cols=162 Identities=16% Similarity=0.245 Sum_probs=88.9
Q ss_pred eEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHHHHHHHHH
Q 007952 13 ITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAAL 92 (583)
Q Consensus 13 vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~l~~~~~ 92 (583)
+++..+++++++|+|++|+|||||++.+.++.. ...+|.+++++..+.... .. +-.++... .+...
T Consensus 200 L~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~-~~F~g~vfv~~~~v~~~~-~~--~~~~~~~~-------~~~~~--- 265 (1153)
T PLN03210 200 LHLESEEVRMVGIWGSSGIGKTTIARALFSRLS-RQFQSSVFIDRAFISKSM-EI--YSSANPDD-------YNMKL--- 265 (1153)
T ss_pred HccccCceEEEEEEcCCCCchHHHHHHHHHHHh-hcCCeEEEeeccccccch-hh--cccccccc-------cchhH---
Confidence 456778899999999999999999999987653 245788988763221110 00 00000000 00000
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHH
Q 007952 93 LRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIV 172 (583)
Q Consensus 93 ~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~~~~~i~ 172 (583)
...++.+.++++..++. +..+ ++.|+| |..++-+++||+- |.. +.+
T Consensus 266 ---------~l~~~~l~~il~~~~~~-----------~~~~-~~~~~~------L~~krvLLVLDdv----~~~---~~l 311 (1153)
T PLN03210 266 ---------HLQRAFLSEILDKKDIK-----------IYHL-GAMEER------LKHRKVLIFIDDL----DDQ---DVL 311 (1153)
T ss_pred ---------HHHHHHHHHHhCCCCcc-----------cCCH-HHHHHH------HhCCeEEEEEeCC----CCH---HHH
Confidence 01122334444443331 1122 566666 3356667889984 433 334
Q ss_pred HHHHHHH---HCCcEEEEEecCCChHHHhh-cCeEEEEcCCeEEEEcChhhHHHHHHhcCC
Q 007952 173 QMLQDIA---EAGKTVVTTIHQPSSRLFHK-FDKLILLGKGSLLYFGKASEAMAYFSSIGC 229 (583)
Q Consensus 173 ~~l~~l~---~~g~tii~~~H~~~~~i~~~-~D~v~~L~~G~iv~~G~~~~~~~~f~~~g~ 229 (583)
+.|+... ..|.+||+|||+... +... +|+++-+.. =+.+++.+.|....+
T Consensus 312 ~~L~~~~~~~~~GsrIIiTTrd~~v-l~~~~~~~~~~v~~------l~~~ea~~LF~~~Af 365 (1153)
T PLN03210 312 DALAGQTQWFGSGSRIIVITKDKHF-LRAHGIDHIYEVCL------PSNELALEMFCRSAF 365 (1153)
T ss_pred HHHHhhCccCCCCcEEEEEeCcHHH-HHhcCCCeEEEecC------CCHHHHHHHHHHHhc
Confidence 4444432 358899999998532 2222 566655431 134677777766544
No 482
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.30 E-value=4.3e-07 Score=86.75 Aligned_cols=65 Identities=25% Similarity=0.352 Sum_probs=45.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCcc--c-cccEEEEccCCCCCCCCCHHHHHHH
Q 007952 19 PGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS--L-KSKIGFVTQDDVLFPHLTVKETLTY 89 (583)
Q Consensus 19 ~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~--~-~~~i~yv~Q~~~~~~~lTv~e~l~~ 89 (583)
+||+++|+|+||||||||+++|+|++. -+.++|.++... . +...++.+|+...++..++.++..+
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~------~~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~ 69 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFS------AKFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASY 69 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC------CEEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHH
Confidence 699999999999999999999999653 157788765421 1 1235666776555555555555544
No 483
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=98.27 E-value=2.2e-05 Score=80.00 Aligned_cols=37 Identities=32% Similarity=0.451 Sum_probs=33.2
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
.+.|+++.+-+++|+++.|.|++|+|||||+..++..
T Consensus 17 ~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~ 53 (271)
T cd01122 17 FPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALD 53 (271)
T ss_pred cceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578998899999999999999999999999988753
No 484
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.24 E-value=2e-06 Score=92.68 Aligned_cols=170 Identities=18% Similarity=0.216 Sum_probs=98.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECC---ccCCc--------cccccEEEEccCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND---HPYSK--------SLKSKIGFVTQDD 75 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g---~~~~~--------~~~~~i~yv~Q~~ 75 (583)
..+++.++ .+.+||.++|+||||+|||||+++|++... ++.|.|.+.| .++.+ ..++.+++|+|.+
T Consensus 153 i~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~--pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd 229 (450)
T PRK06002 153 VRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADA--FDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSD 229 (450)
T ss_pred cEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCC--CCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCC
Confidence 56788886 899999999999999999999999998543 4678888864 44321 1346799999987
Q ss_pred CCCCCCCHHHHH--HHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHH-HHHhCCC
Q 007952 76 VLFPHLTVKETL--TYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGN-EIIINPS 152 (583)
Q Consensus 76 ~~~~~lTv~e~l--~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~-~L~~~p~ 152 (583)
.- ..+-+ .+.+ -.+.|.+..-|- |..+ ....++ |.+-|. ++.
T Consensus 230 ~~-----~~~r~~~~~~a--------------~~iAEyfrd~G~----~Vll---~~DslT-----r~A~A~rEis---- 274 (450)
T PRK06002 230 ES-----PMMRRLAPLTA--------------TAIAEYFRDRGE----NVLL---IVDSVT-----RFAHAAREVA---- 274 (450)
T ss_pred CC-----HHHHHHHHHHH--------------HHHHHHHHHcCC----CEEE---eccchH-----HHHHHHHHHH----
Confidence 41 21211 1111 011222222221 1111 011222 111110 000
Q ss_pred EEEEeCC--CCCCCHHHHHHHHHHHHHHHH--C--C-cEEEEEecCCChHHHh-hcCeEEEEcCCeEEEEc
Q 007952 153 LLFLDEP--TSGLDSTTALRIVQMLQDIAE--A--G-KTVVTTIHQPSSRLFH-KFDKLILLGKGSLLYFG 215 (583)
Q Consensus 153 illLDEP--tsgLD~~~~~~i~~~l~~l~~--~--g-~tii~~~H~~~~~i~~-~~D~v~~L~~G~iv~~G 215 (583)
+.++|| +.|-.+..-..+-+++.+..+ . | .|.+.+..-+..++-+ .+|.+.-+-||+++..-
T Consensus 275 -l~~ge~P~~~gyp~~vf~~l~~l~ERag~~~~~~GSIT~~~tvl~~~dd~~dpI~d~~~~i~Dg~ivLsr 344 (450)
T PRK06002 275 -LAAGEPPVARGYPPSVFSELPRLLERAGPGAEGGGSITGIFSVLVDGDDHNDPVADSIRGTLDGHIVLDR 344 (450)
T ss_pred -HhcCCCCccccCCccHHHHhhHHHHHhccCCCCCeeeeEEEEEEecCCCCCCccHHHHHhhcceEEEEcH
Confidence 122354 336777666677777776653 2 3 4777776655544322 46777777789988743
No 485
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=98.22 E-value=4.4e-05 Score=89.71 Aligned_cols=45 Identities=24% Similarity=0.298 Sum_probs=41.8
Q ss_pred hCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHHCCcEEEEEecCCC
Q 007952 149 INPSLLFLDEPTSGLD-STTALRIVQMLQDIAEAGKTVVTTIHQPS 193 (583)
Q Consensus 149 ~~p~illLDEPtsgLD-~~~~~~i~~~l~~l~~~g~tii~~~H~~~ 193 (583)
.+|+++++|||+.+|| +..+..+.+.++.+++.|.+++++||+|.
T Consensus 634 ~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~ 679 (811)
T PRK13873 634 GRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKKNVSVIFATQSLA 679 (811)
T ss_pred CCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHcCCEEEEEECCHH
Confidence 5899999999999999 78899999999999888999999999975
No 486
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.20 E-value=1.8e-06 Score=67.18 Aligned_cols=35 Identities=43% Similarity=0.757 Sum_probs=29.1
Q ss_pred eeceEEEEeC-CeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 10 LNGITGSVNP-GEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 10 L~~vs~~i~~-Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
+++.++++.+ |+++.|.||||||||||+++|.=.+
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4556788876 5699999999999999999998544
No 487
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=98.18 E-value=3.5e-06 Score=71.22 Aligned_cols=49 Identities=33% Similarity=0.482 Sum_probs=38.1
Q ss_pred cCcccChHHH-HHHHHHHHHH------h------CCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 007952 129 FVRGVSGGER-KRVCIGNEII------I------NPSLLFLDEPTSGLDSTTALRIVQMLQD 177 (583)
Q Consensus 129 ~~~~LSgGer-qRv~ia~~L~------~------~p~illLDEPtsgLD~~~~~~i~~~l~~ 177 (583)
...++||||| ..+.++.+++ . .|.+++||||+++||+.....+++.|++
T Consensus 29 ~~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 29 SFGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp EGGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred cCCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 4578999999 4455544432 2 3799999999999999999999999875
No 488
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.14 E-value=7.8e-06 Score=88.26 Aligned_cols=109 Identities=17% Similarity=0.215 Sum_probs=69.2
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECC---ccCCc----cc---cccEEEE-----
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND---HPYSK----SL---KSKIGFV----- 71 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g---~~~~~----~~---~~~i~yv----- 71 (583)
..+++++ +.+.+||.++|+|+||+|||||+++|+|.... ...|.|.+.| .++.+ .+ ..+.+++
T Consensus 152 i~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~-~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats 229 (442)
T PRK06315 152 VRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEE-ADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTS 229 (442)
T ss_pred EEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhccccc-CCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCC
Confidence 4688888 99999999999999999999999999986532 3346777755 33321 11 1234555
Q ss_pred ccCCC--CCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCC
Q 007952 72 TQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE 118 (583)
Q Consensus 72 ~Q~~~--~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 118 (583)
+|++. +.+.+ +...+.-..+......+...+...++.+.+++++|.
T Consensus 230 ~q~p~~rlnp~~-va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~ 277 (442)
T PRK06315 230 DQSSQLRLNAAY-VGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLA 277 (442)
T ss_pred CCCHHHHhhHHH-HHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCcC
Confidence 88753 33333 333333222222111123456677888899999884
No 489
>COG1682 TagG ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=98.13 E-value=0.0014 Score=66.54 Aligned_cols=230 Identities=17% Similarity=0.236 Sum_probs=132.2
Q ss_pred HHHHHHHHHHHHHHH-hhcchh--HHH---HHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHHHHHHHHHH--HH
Q 007952 326 WIQQYTILFRRGIKE-HRHDYF--SWL---RITQVLATAVILGLLWWQSDSKSPKGLEDQAGLLFFIAVFWSFFPI--FT 397 (583)
Q Consensus 326 ~~~q~~~l~~R~~~~-~r~~~~--~~~---r~~~~~~~~li~G~lf~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~--~~ 397 (583)
.++....|.+|.++. .|+..+ .|. =+++..+++++.|.++-+-+.+ --..--.|.+. +.|.+. ..
T Consensus 16 ~~~li~~L~~~eik~Ryr~s~LG~~W~~l~P~~~~~~~~~vf~~l~~~~~~~--~~~~l~~G~~~-----w~f~~~~i~~ 88 (263)
T COG1682 16 YRRLIGALVKREIKTRYRRSVLGYLWSLLNPLLMILVYTLVFGALLRSPGLN--FLAYLLAGLIL-----WFFFSEAISE 88 (263)
T ss_pred HHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHhCCCcc--hHHHHHHHHHH-----HHHHHHHHHh
Confidence 345677788999986 465543 232 2344444555555554322111 11111223332 222221 12
Q ss_pred HHHHHHHhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 007952 398 AIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQGLG 477 (583)
Q Consensus 398 ~i~~~~~er~v~~rE~~~~~Y~~~ay~la~~l~~lP~~~~~~~~~~~i~Y~~~gl~~~~~~f~~~~~~~~l~~~~~~~~g 477 (583)
+...+.+...++.|-+ .++..+.+++++.++-...+..++....+-+.-+.+ + .++......+.+..+.+.++|
T Consensus 89 ~~~s~~~n~~li~k~~----~p~~~~~~~~~~~~~~~~~i~~iiil~~~i~~~~~~-s-~~~l~~~~~l~~l~l~~~g~~ 162 (263)
T COG1682 89 GAGSVVANAALIKKIN----FPPLILPVARTLSRLFNFLIHLIIILIFLIILGVEP-S-WHWLLLLPALLLLILFSVGLG 162 (263)
T ss_pred HHHHhhhhHHHHhCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-c-HHHHHHHHHHHHHHHHHHHHH
Confidence 2344555555555432 278899999999998666666555544444444433 3 344444455566677777888
Q ss_pred HHHHHhc---CCHHHHHHHHHHHHHHHHHHhhcccC--CCccchhhhhccCHHHHHHHHHHHHHcCCCCCCCCCcccCcc
Q 007952 478 LAIGAIL---MDLKKATTLASVTIMTFMLAGGYFVQ--EVPVFISWIRYMSFNFHTYKILLKIQYADISPIVNGMRTDSG 552 (583)
Q Consensus 478 ~~i~~~~---~~~~~A~~~~~~~~~~~~l~~Gf~i~--~ip~~~~Wl~yis~~~ya~~~l~~~ef~~~~~~~~g~~~~~~ 552 (583)
+++|+++ +|.... -+.++-+++..+|.+=+ .+|+-++|+.++||+.+-.|..=..-+.+..+ .
T Consensus 163 l~~a~l~v~fRD~~~i---~~~v~~~~f~~sPIi~~~~~~p~~~~~~~~~NP~~~iie~~R~~~~~~~~~---------~ 230 (263)
T COG1682 163 LILASLGVRFRDLGQI---LGVVLQLLFFLSPIIYPVSNLPEQLRELVLLNPLTHIIESFRAPLLGGDVP---------D 230 (263)
T ss_pred HHHHhHhhhcccHHHH---HHHHHHHHHHhCceeeehhhccHHHHHHHHHCcHHHHHHHHHHHHhCCCcc---------c
Confidence 8877765 454443 34444455556666544 78999999999999999999866555444332 2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 007952 553 FREVCALVAMVFGYRLLAYLSLRKMKLH 580 (583)
Q Consensus 553 ~~~~~~l~~~~~~~~~l~~~~L~~~~~~ 580 (583)
+.+.....+..++..+++++..++.+++
T Consensus 231 ~~~~~~~~~~~li~l~vg~~~~~~~~~~ 258 (263)
T COG1682 231 LHLLVYILLLTLILLFVGLLLFRKFRKR 258 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344555556666667777777766654
No 490
>PRK01889 GTPase RsgA; Reviewed
Probab=98.11 E-value=3.4e-06 Score=89.44 Aligned_cols=106 Identities=18% Similarity=0.271 Sum_probs=68.6
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-cccccEEEEccCCCCCCCCCHHHHHH
Q 007952 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-SLKSKIGFVTQDDVLFPHLTVKETLT 88 (583)
Q Consensus 10 L~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-~~~~~i~yv~Q~~~~~~~lTv~e~l~ 88 (583)
++.+.-.+++|++++|+|+||+|||||+|.|+|... +..|+|.+++..... ..++.+++++|+..++++ ....++.
T Consensus 185 l~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~--~~~G~i~~~~~~g~~tt~~~~l~~l~~~~~l~Dt-pG~~~~~ 261 (356)
T PRK01889 185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEV--QKTGAVREDDSKGRHTTTHRELHPLPSGGLLIDT-PGMRELQ 261 (356)
T ss_pred HHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcc--cceeeEEECCCCCcchhhhccEEEecCCCeecCC-Cchhhhc
Confidence 455555678999999999999999999999999654 568999998754322 234678999998887765 3444443
Q ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccc
Q 007952 89 YAALLRLPNTLTKQQKEKRAIDVINELGLERCQDT 123 (583)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~ 123 (583)
+.. +. ...........++.+.+...+|.+.
T Consensus 262 l~~----~~-~~l~~~f~~~~~~~~~c~f~~c~h~ 291 (356)
T PRK01889 262 LWD----AE-DGVEETFSDIEELAAQCRFRDCAHE 291 (356)
T ss_pred ccC----ch-hhHHHhHHHHHHHHccCCCCCCCCC
Confidence 321 00 0011112234455565666666553
No 491
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.10 E-value=2.3e-05 Score=70.44 Aligned_cols=55 Identities=18% Similarity=0.288 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-----CCcEEEEEecCCC
Q 007952 138 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-----AGKTVVTTIHQPS 193 (583)
Q Consensus 138 rqRv~ia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~-----~g~tii~~~H~~~ 193 (583)
++..........++.++++||.-.. +......+.+.+..... .+.++|++++.+.
T Consensus 72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 3444555566678999999998775 66677788888888753 4778899988643
No 492
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.07 E-value=4.2e-06 Score=83.30 Aligned_cols=72 Identities=17% Similarity=0.278 Sum_probs=47.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccE----EEECCccCCccccccEEEEccCCCCCCCCCHHHHHHHHHH
Q 007952 18 NPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGS----ITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAAL 92 (583)
Q Consensus 18 ~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~----I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~l~~~~~ 92 (583)
.+..+++|.||||||||||.+.|++.+. +.+|. |.+++.......+...+++++.+ ..+..++.+.+.+...
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~--~~~g~~~v~i~~D~~~~~~~~~~~~g~~~~~~-~~~~~d~~~~~~~l~~ 106 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQ--QDGELPAIQVPMDGFHLDNAVLDAHGLRPRKG-APETFDVAGLAALLRR 106 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhh--hccCCceEEEecccccCCHHHHHhcccccccC-CCCCCCHHHHHHHHHH
Confidence 4567999999999999999999999764 44676 55555433322333456766543 3345666665555433
No 493
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.06 E-value=1.8e-05 Score=76.05 Aligned_cols=67 Identities=13% Similarity=0.173 Sum_probs=44.5
Q ss_pred HHHHHHHHcCCCccccccccCccCcccChHHHHHHH--HHHHHHh-CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC
Q 007952 107 RAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC--IGNEIII-NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA 181 (583)
Q Consensus 107 ~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~--ia~~L~~-~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~ 181 (583)
.+.+.++..++.- -.+++ .+..+|+||++++. +.+.+-. ++++ .|+|++|.....++.+.|.++.++
T Consensus 126 ~i~~~l~~~~~~~---iiv~n-K~Dl~~~~~~~~~~~~i~~~l~~~~~~~----~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 126 QMIEWLKEYGIPV---LIVLT-KADKLKKGERKKQLKKVRKALKFGDDEV----ILFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred HHHHHHHHcCCcE---EEEEE-CcccCCHHHHHHHHHHHHHHHHhcCCce----EEEEcCCCCCHHHHHHHHHHHhcC
Confidence 3445556555431 11222 34568999999977 4444433 3444 399999999999999999988764
No 494
>TIGR03518 ABC_perm_GldF gliding motility-associated ABC transporter permease protein GldF. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldF is believed to be a ABC transporter permease protein (along with ATP-binding subunit, GldA and a sunstrate-binding subunit, GldG) and is linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldF abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.05 E-value=0.0023 Score=64.18 Aligned_cols=153 Identities=16% Similarity=0.200 Sum_probs=92.1
Q ss_pred HHHHHHhcCCCC--------ChHHHHHHHHHHHHHHHHHHHH---hhhhhhhhccC--CCCChHHHHHHHHHHHHHHHHH
Q 007952 407 AMLSKERAADMY--------RLSAYFLARTTSDLPLNLVLPV---LFLVIVYFMAG--LRMGAGPFFLSMLTVFLSIVAA 473 (583)
Q Consensus 407 ~v~~rE~~~~~Y--------~~~ay~la~~l~~lP~~~~~~~---~~~~i~Y~~~g--l~~~~~~f~~~~~~~~l~~~~~ 473 (583)
..+.+||++|.. +...+.++|.++-+-+..+..+ ++.....+... -..+.+.++..++..++...+.
T Consensus 71 ~~ia~Er~~GTle~Llt~Pvs~~~ivlgK~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 150 (240)
T TIGR03518 71 RSFAEERKLGTLELLLTRPISDWQIILGKYLGSLTLVILALLPTLLYVFTIYQLGNPVGNLDIGSTFGSYIGLLLLGSVY 150 (240)
T ss_pred HHHHHHHHcCHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHH
Confidence 455666666653 4578899999888655443322 12222222211 1234556655555566677788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcc-cCCC--ccchhhhhccCHHHHHHHHHHHHHcCCCCCCCCCcccC
Q 007952 474 QGLGLAIGAILMDLKKATTLASVTIMTFMLAGGYF-VQEV--PVFISWIRYMSFNFHTYKILLKIQYADISPIVNGMRTD 550 (583)
Q Consensus 474 ~~~g~~i~~~~~~~~~A~~~~~~~~~~~~l~~Gf~-i~~i--p~~~~Wl~yis~~~ya~~~l~~~ef~~~~~~~~g~~~~ 550 (583)
.++|.++|++.++...|..++... .+.++.|+- +.++ |++.+|+.|+||.+|-.+. ....+
T Consensus 151 ~aig~~iSsl~~~q~~a~~~~~~~--~~~l~~~~~~l~~~~~~~~~~~l~~~sp~~~~~~~-~~g~i------------- 214 (240)
T TIGR03518 151 TAIGLFASSLTENQIVAFIIAVFL--CFLFYFGFDGLASLLWGGSAYTISELGLSYHYESI-SRGVI------------- 214 (240)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHH--HHHHHHHHHHHhhhcchhHHHHHHHcCHHHHHHHH-HcCcc-------------
Confidence 899999999998888876544332 222222221 3334 8889999999997764333 21111
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHH
Q 007952 551 SGFREVCALVAMVFGYRLLAYLSLRK 576 (583)
Q Consensus 551 ~~~~~~~~l~~~~~~~~~l~~~~L~~ 576 (583)
.+.|+...+.+.+.+..++...+++
T Consensus 215 -~~~~~v~~~~~~~~~l~l~~~~~~~ 239 (240)
T TIGR03518 215 -DSRDVIYFLSITVLFLALTKLQLKS 239 (240)
T ss_pred -cHhHHHHHHHHHHHHHHHHHHHHhc
Confidence 1457777777777777777766643
No 495
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=98.03 E-value=1.4e-05 Score=87.37 Aligned_cols=62 Identities=16% Similarity=0.196 Sum_probs=43.3
Q ss_pred hCCCEEEEeCCCCC----CC-----HHHHHHHHHHHHHHHH-CCcEEEEEecCCCh-------HHHhhcCeEEEEcCCe
Q 007952 149 INPSLLFLDEPTSG----LD-----STTALRIVQMLQDIAE-AGKTVVTTIHQPSS-------RLFHKFDKLILLGKGS 210 (583)
Q Consensus 149 ~~p~illLDEPtsg----LD-----~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~-------~i~~~~D~v~~L~~G~ 210 (583)
.+|+++++|.-++= +| ....++++..|.++++ .|.|++++.|...+ .+..++|.|+.|+.++
T Consensus 169 ~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hvtkeg~~aG~~~le~lvD~VI~Le~~~ 247 (454)
T TIGR00416 169 ENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDR 247 (454)
T ss_pred cCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEeccccCCccCCcccEeeeceEEEEEeccC
Confidence 47999999987641 11 2234566667777755 59999999996432 1466899999997654
No 496
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.01 E-value=4.1e-06 Score=85.95 Aligned_cols=73 Identities=10% Similarity=0.145 Sum_probs=48.4
Q ss_pred eEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCcc---CCccccccEEEEccCCCCCCCCCHHHHHHHHHHcC
Q 007952 21 EVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP---YSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLR 94 (583)
Q Consensus 21 e~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~---~~~~~~~~i~yv~Q~~~~~~~lTv~e~l~~~~~~~ 94 (583)
.++||.||||||||||.++|.+.+...+.+|+|.+-+.+ .....++..++. |+..+.+.+++.+.+.+-..++
T Consensus 63 ~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~~~~l~~~g~~-~~~g~P~s~D~~~l~~~L~~Lk 138 (290)
T TIGR00554 63 YIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPNQVLKERNLM-KKKGFPESYDMHRLVKFLSDLK 138 (290)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccccHHHHHHcCCc-cccCCChhccHHHHHHHHHHHH
Confidence 699999999999999999999866432346776653332 222223335543 6666677778877776655443
No 497
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=98.01 E-value=0.00017 Score=72.10 Aligned_cols=46 Identities=24% Similarity=0.369 Sum_probs=33.8
Q ss_pred HhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHH-CCcEEEEEecCCC
Q 007952 148 IINPSLLFLDEPTSGLDSTTALRIVQ-MLQDIAE-AGKTVVTTIHQPS 193 (583)
Q Consensus 148 ~~~p~illLDEPtsgLD~~~~~~i~~-~l~~l~~-~g~tii~~~H~~~ 193 (583)
+.+..++++||+-.|=++.....+.. .++.+.+ .+..++++||...
T Consensus 120 ~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~~ 167 (235)
T PF00488_consen 120 ATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFHE 167 (235)
T ss_dssp --TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-GG
T ss_pred cccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccch
Confidence 45678999999999999988877644 4555777 4888999999863
No 498
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.99 E-value=7e-06 Score=79.00 Aligned_cols=37 Identities=38% Similarity=0.556 Sum_probs=29.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCC
Q 007952 20 GEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS 61 (583)
Q Consensus 20 Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~ 61 (583)
|++++|+||||||||||++.|++... ..+.+++..+.
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~-----~~~~~~~~~~~ 38 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQ-----TQLLVAHRYIT 38 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC-----CeEEEcCEECC
Confidence 78999999999999999999998542 25666666544
No 499
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=97.99 E-value=3.5e-05 Score=81.65 Aligned_cols=43 Identities=30% Similarity=0.461 Sum_probs=31.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCCCCC-CCcccEEEECCccC
Q 007952 18 NPGEVLALMGPSGSGKTTLLNLLSGRLME-PTVGGSITYNDHPY 60 (583)
Q Consensus 18 ~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~-~~~~G~I~~~g~~~ 60 (583)
++|.+++|.||+||||||+|++|.+.+.. ++..+.|.....|+
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~Edpi 175 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPI 175 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCc
Confidence 47899999999999999999999986532 12233555544443
No 500
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=97.98 E-value=8.9e-06 Score=75.23 Aligned_cols=45 Identities=11% Similarity=0.127 Sum_probs=33.9
Q ss_pred CcccChHHHHHHHHHHHHH-----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 007952 130 VRGVSGGERKRVCIGNEII-----INPSLLFLDEPTSGLDSTTALRIVQMLQDI 178 (583)
Q Consensus 130 ~~~LSgGerqRv~ia~~L~-----~~p~illLDEPtsgLD~~~~~~i~~~l~~l 178 (583)
...++++++++........ ..|+++ |+|++|.....++++.|.++
T Consensus 120 ~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 120 ADKLKKSELAKALKEIKKELKLFEIDPPII----LFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred hhcCChHHHHHHHHHHHHHHHhccCCCceE----EEecCCCCCHHHHHHHHHHh
Confidence 4467889888876665533 345555 99999999999999988764
Done!