Query 007952
Match_columns 583
No_of_seqs 403 out of 2532
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 14:32:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007952.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007952hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tui_C Methionine import ATP-b 100.0 1.4E-48 4.9E-53 408.6 26.0 205 6-221 40-252 (366)
2 3tif_A Uncharacterized ABC tra 100.0 2.4E-48 8.3E-53 386.7 24.9 205 7-220 18-232 (235)
3 3rlf_A Maltose/maltodextrin im 100.0 3.8E-48 1.3E-52 407.8 27.4 208 4-222 13-223 (381)
4 3gfo_A Cobalt import ATP-bindi 100.0 3.8E-48 1.3E-52 393.2 25.3 206 6-222 20-233 (275)
5 2olj_A Amino acid ABC transpor 100.0 6.6E-48 2.2E-52 389.2 26.6 206 5-221 35-247 (263)
6 3fvq_A Fe(3+) IONS import ATP- 100.0 2.4E-48 8.1E-53 406.7 24.0 208 4-222 14-228 (359)
7 1b0u_A Histidine permease; ABC 100.0 5.7E-48 1.9E-52 390.1 25.9 206 5-221 17-241 (262)
8 1z47_A CYSA, putative ABC-tran 100.0 2.2E-47 7.5E-52 399.6 27.7 207 5-222 26-235 (355)
9 2pcj_A ABC transporter, lipopr 100.0 2.3E-47 7.9E-52 377.0 25.1 200 5-216 15-222 (224)
10 1vpl_A ABC transporter, ATP-bi 100.0 2.2E-47 7.5E-52 384.1 25.3 207 5-222 26-235 (256)
11 1g6h_A High-affinity branched- 100.0 1.2E-47 4.1E-52 386.8 22.6 207 5-219 18-239 (257)
12 2it1_A 362AA long hypothetical 100.0 3.8E-47 1.3E-51 399.1 26.9 208 4-222 13-223 (362)
13 1g29_1 MALK, maltose transport 100.0 7.1E-47 2.4E-51 399.0 27.8 207 5-222 14-229 (372)
14 2yyz_A Sugar ABC transporter, 100.0 3E-47 1E-51 399.5 24.6 207 5-222 14-223 (359)
15 1oxx_K GLCV, glucose, ABC tran 100.0 3.6E-47 1.2E-51 398.9 24.0 207 5-222 14-230 (353)
16 4g1u_C Hemin import ATP-bindin 100.0 3.7E-47 1.3E-51 384.7 22.8 205 4-221 21-236 (266)
17 1ji0_A ABC transporter; ATP bi 100.0 4.9E-47 1.7E-51 378.5 22.0 205 5-221 17-227 (240)
18 1v43_A Sugar-binding transport 100.0 6.6E-47 2.3E-51 398.6 23.9 207 5-222 22-231 (372)
19 3d31_A Sulfate/molybdate ABC t 100.0 2E-46 7E-51 391.8 22.7 202 5-221 12-216 (348)
20 2onk_A Molybdate/tungstate ABC 100.0 4.2E-46 1.4E-50 371.4 22.6 199 9-221 14-215 (240)
21 2yz2_A Putative ABC transporte 100.0 4.5E-46 1.5E-50 377.1 22.0 204 7-222 20-227 (266)
22 2d2e_A SUFC protein; ABC-ATPas 100.0 4.4E-46 1.5E-50 373.8 21.6 209 5-219 14-230 (250)
23 2ihy_A ABC transporter, ATP-bi 100.0 4.6E-46 1.6E-50 379.0 19.2 208 5-220 32-250 (279)
24 2zu0_C Probable ATP-dependent 100.0 5.4E-45 1.8E-49 369.3 25.6 218 5-229 31-260 (267)
25 2qi9_C Vitamin B12 import ATP- 100.0 4.9E-45 1.7E-49 365.5 21.9 196 8-220 14-220 (249)
26 2nq2_C Hypothetical ABC transp 100.0 1.9E-44 6.4E-49 362.4 24.8 197 6-220 17-215 (253)
27 2ff7_A Alpha-hemolysin translo 100.0 6.1E-45 2.1E-49 364.8 20.8 201 6-221 21-231 (247)
28 3nh6_A ATP-binding cassette SU 100.0 9.5E-45 3.2E-49 373.1 20.5 202 5-222 65-277 (306)
29 2ixe_A Antigen peptide transpo 100.0 7.1E-45 2.4E-49 369.0 18.3 202 7-222 32-245 (271)
30 1mv5_A LMRA, multidrug resista 100.0 7.9E-45 2.7E-49 363.3 17.9 204 5-222 13-226 (243)
31 1sgw_A Putative ABC transporte 100.0 3.5E-44 1.2E-48 351.2 15.0 188 8-211 23-210 (214)
32 2ghi_A Transport protein; mult 100.0 2.1E-43 7.2E-48 356.2 20.7 199 7-222 33-242 (260)
33 2pjz_A Hypothetical protein ST 100.0 4.4E-43 1.5E-47 354.0 20.5 193 7-221 18-214 (263)
34 2pze_A Cystic fibrosis transme 100.0 1.2E-42 4.1E-47 344.3 19.0 190 6-221 20-217 (229)
35 2cbz_A Multidrug resistance-as 100.0 2.8E-42 9.5E-47 343.5 19.7 194 6-222 17-217 (237)
36 3gd7_A Fusion complex of cysti 100.0 9.4E-43 3.2E-47 369.1 15.8 201 5-222 32-242 (390)
37 3b60_A Lipid A export ATP-bind 100.0 3.4E-41 1.2E-45 377.5 23.0 201 7-222 356-567 (582)
38 4a82_A Cystic fibrosis transme 100.0 1.7E-41 5.8E-46 379.5 19.2 201 6-222 353-564 (578)
39 2yl4_A ATP-binding cassette SU 100.0 2.7E-41 9.4E-46 379.1 20.8 203 7-222 357-570 (595)
40 3qf4_A ABC transporter, ATP-bi 100.0 1.8E-41 6E-46 379.7 18.3 202 5-222 354-566 (587)
41 3b5x_A Lipid A export ATP-bind 100.0 2.7E-41 9.4E-46 378.2 19.0 201 7-222 356-567 (582)
42 3qf4_B Uncharacterized ABC tra 100.0 4.5E-41 1.5E-45 377.3 15.9 201 6-222 367-578 (598)
43 2bbs_A Cystic fibrosis transme 100.0 2.2E-40 7.6E-45 338.7 17.2 189 6-221 50-246 (290)
44 4f4c_A Multidrug resistance pr 100.0 9.6E-40 3.3E-44 394.7 16.9 204 5-222 1090-1304(1321)
45 4f4c_A Multidrug resistance pr 100.0 1.1E-38 3.9E-43 385.4 19.6 202 5-222 429-641 (1321)
46 3g5u_A MCG1178, multidrug resi 100.0 8.1E-38 2.8E-42 377.0 17.7 203 6-222 402-613 (1284)
47 3g5u_A MCG1178, multidrug resi 100.0 6.1E-37 2.1E-41 369.4 23.3 202 7-222 1046-1258(1284)
48 3bk7_A ABC transporter ATP-bin 100.0 4.9E-36 1.7E-40 335.2 21.8 190 9-222 371-563 (607)
49 1yqt_A RNAse L inhibitor; ATP- 100.0 4.5E-36 1.5E-40 332.0 19.2 190 9-222 301-493 (538)
50 3ozx_A RNAse L inhibitor; ATP 100.0 2.3E-35 7.9E-40 325.7 20.6 191 9-221 283-476 (538)
51 3ux8_A Excinuclease ABC, A sub 100.0 1.6E-35 5.4E-40 336.8 18.0 206 6-221 30-297 (670)
52 3j16_B RLI1P; ribosome recycli 100.0 5.4E-35 1.8E-39 326.3 20.4 192 7-222 360-559 (608)
53 2iw3_A Elongation factor 3A; a 100.0 6.7E-34 2.3E-38 328.6 21.4 188 4-222 445-635 (986)
54 1yqt_A RNAse L inhibitor; ATP- 100.0 1.1E-34 3.6E-39 321.0 11.9 182 8-210 36-235 (538)
55 3bk7_A ABC transporter ATP-bin 100.0 1.2E-34 4E-39 324.1 11.8 182 8-210 106-305 (607)
56 3ux8_A Excinuclease ABC, A sub 100.0 2.1E-33 7.2E-38 319.3 19.4 196 7-221 335-639 (670)
57 2iw3_A Elongation factor 3A; a 100.0 5.8E-33 2E-37 320.8 13.0 192 7-216 686-981 (986)
58 3ozx_A RNAse L inhibitor; ATP 100.0 2.5E-32 8.5E-37 301.5 9.9 174 17-212 22-216 (538)
59 3pih_A Uvrabc system protein A 100.0 1.7E-30 5.7E-35 300.1 24.3 200 7-221 597-901 (916)
60 3j16_B RLI1P; ribosome recycli 100.0 1.7E-31 5.7E-36 298.2 12.5 187 8-213 92-301 (608)
61 2r6f_A Excinuclease ABC subuni 100.0 9.2E-31 3.2E-35 300.2 18.4 198 8-221 638-941 (972)
62 2vf7_A UVRA2, excinuclease ABC 100.0 2.8E-30 9.6E-35 295.9 19.2 198 8-221 511-826 (842)
63 2ygr_A Uvrabc system protein A 100.0 3.5E-30 1.2E-34 296.5 18.3 199 8-222 656-960 (993)
64 4aby_A DNA repair protein RECN 100.0 5.7E-29 2E-33 266.9 18.8 204 7-215 48-381 (415)
65 2npi_A Protein CLP1; CLP1-PCF1 100.0 1E-31 3.6E-36 290.9 -6.5 186 10-220 128-336 (460)
66 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 9.2E-26 3.2E-30 238.2 18.9 84 128-213 275-364 (365)
67 3b85_A Phosphate starvation-in 99.9 1.4E-28 4.7E-33 239.7 -7.5 142 4-193 10-159 (208)
68 1e69_A Chromosome segregation 99.9 2.5E-25 8.5E-30 231.1 13.9 90 129-221 216-312 (322)
69 4gp7_A Metallophosphoesterase; 99.9 6.2E-26 2.1E-30 214.1 3.2 143 12-193 1-160 (171)
70 1tq4_A IIGP1, interferon-induc 99.9 3.8E-27 1.3E-31 251.2 -7.3 170 7-203 36-247 (413)
71 1ye8_A Protein THEP1, hypothet 99.9 1.4E-24 4.7E-29 206.4 3.1 145 22-213 2-159 (178)
72 1znw_A Guanylate kinase, GMP k 99.9 2E-27 6.8E-32 231.1 -18.2 182 5-207 7-202 (207)
73 2v9p_A Replication protein E1; 99.9 1.3E-26 4.4E-31 237.6 -14.1 158 7-227 113-271 (305)
74 3b9q_A Chloroplast SRP recepto 99.9 4.6E-24 1.6E-28 219.3 1.0 173 10-211 90-284 (302)
75 2vf7_A UVRA2, excinuclease ABC 99.9 9.4E-22 3.2E-26 225.5 17.2 110 104-221 356-474 (842)
76 2og2_A Putative signal recogni 99.9 6.9E-23 2.4E-27 214.7 1.5 172 11-211 148-341 (359)
77 3sop_A Neuronal-specific septi 99.8 5.5E-24 1.9E-28 215.4 -7.1 146 22-192 4-150 (270)
78 3qkt_A DNA double-strand break 99.8 5.6E-21 1.9E-25 199.7 13.8 78 128-207 244-327 (339)
79 2o5v_A DNA replication and rep 99.8 3.3E-21 1.1E-25 202.2 12.0 86 127-220 259-354 (359)
80 2dpy_A FLII, flagellum-specifi 99.8 3.4E-23 1.1E-27 223.1 -3.5 177 6-220 144-342 (438)
81 2pt7_A CAG-ALFA; ATPase, prote 99.8 1.8E-22 6.1E-27 210.1 1.6 131 9-211 160-292 (330)
82 1z6g_A Guanylate kinase; struc 99.8 2.8E-25 9.6E-30 217.9 -20.4 171 7-207 10-192 (218)
83 2jeo_A Uridine-cytidine kinase 99.8 1.7E-22 5.9E-27 201.4 -1.2 183 2-225 7-190 (245)
84 1cr0_A DNA primase/helicase; R 99.8 8.9E-22 3.1E-26 201.5 3.4 185 6-211 21-237 (296)
85 3pih_A Uvrabc system protein A 99.8 7.6E-21 2.6E-25 219.7 11.5 153 48-222 394-560 (916)
86 4ad8_A DNA repair protein RECN 99.8 2.7E-20 9.4E-25 205.3 12.0 78 129-209 393-473 (517)
87 3aez_A Pantothenate kinase; tr 99.8 1.4E-22 4.7E-27 209.3 -9.1 123 17-165 87-209 (312)
88 1tf7_A KAIC; homohexamer, hexa 99.8 1.2E-22 4.1E-27 224.5 -11.3 169 6-210 24-211 (525)
89 3thx_A DNA mismatch repair pro 99.8 1.4E-20 4.6E-25 218.5 4.3 161 5-220 647-811 (934)
90 1tf7_A KAIC; homohexamer, hexa 99.8 8.8E-20 3E-24 201.6 10.5 156 14-210 275-444 (525)
91 2r6f_A Excinuclease ABC subuni 99.8 4.6E-19 1.6E-23 203.7 16.1 134 80-221 451-599 (972)
92 2ygr_A Uvrabc system protein A 99.8 7.1E-19 2.4E-23 202.8 13.6 133 78-222 466-617 (993)
93 2eyu_A Twitching motility prot 99.8 6.6E-20 2.2E-24 184.6 4.3 132 8-208 15-147 (261)
94 2ehv_A Hypothetical protein PH 99.8 2.1E-20 7.1E-25 185.4 0.4 169 9-207 18-206 (251)
95 1f2t_B RAD50 ABC-ATPase; DNA d 99.8 7.2E-19 2.5E-23 161.6 10.2 82 127-210 52-141 (148)
96 2o8b_B DNA mismatch repair pro 99.8 3.8E-20 1.3E-24 217.2 1.4 161 5-219 767-939 (1022)
97 2obl_A ESCN; ATPase, hydrolase 99.8 4.8E-20 1.7E-24 192.8 1.9 178 6-220 58-253 (347)
98 4a74_A DNA repair and recombin 99.8 6.4E-20 2.2E-24 179.6 2.5 153 15-210 20-201 (231)
99 3thx_B DNA mismatch repair pro 99.7 1.5E-18 5.1E-23 200.9 6.5 146 5-203 658-805 (918)
100 1ewq_A DNA mismatch repair pro 99.7 6.6E-19 2.3E-23 201.0 2.4 135 5-200 564-704 (765)
101 3asz_A Uridine kinase; cytidin 99.7 1E-20 3.5E-25 183.5 -11.6 145 17-192 3-161 (211)
102 1pzn_A RAD51, DNA repair and r 99.7 3.9E-19 1.3E-23 186.3 -1.7 165 9-216 119-309 (349)
103 1rj9_A FTSY, signal recognitio 99.7 1.1E-18 3.7E-23 179.3 1.2 147 19-192 101-258 (304)
104 2qnr_A Septin-2, protein NEDD5 99.7 1.7E-19 5.8E-24 185.3 -6.0 158 4-193 8-168 (301)
105 1wb9_A DNA mismatch repair pro 99.7 2.6E-18 8.8E-23 197.2 3.0 158 5-216 593-752 (800)
106 2w0m_A SSO2452; RECA, SSPF, un 99.7 4.6E-18 1.6E-22 166.2 2.6 167 7-209 9-192 (235)
107 2i3b_A HCR-ntpase, human cance 99.7 5.4E-19 1.8E-23 169.3 -5.4 156 20-215 1-169 (189)
108 1nlf_A Regulatory protein REPA 99.7 1.8E-16 6.1E-21 160.8 11.9 152 15-193 25-182 (279)
109 3szr_A Interferon-induced GTP- 99.7 2.2E-18 7.4E-23 193.3 -3.9 169 15-222 43-237 (608)
110 3jvv_A Twitching mobility prot 99.7 1.7E-17 5.8E-22 174.0 2.8 128 16-209 119-246 (356)
111 2bdt_A BH3686; alpha-beta prot 99.6 6.5E-20 2.2E-24 174.9 -19.1 169 20-220 2-182 (189)
112 1s96_A Guanylate kinase, GMP k 99.6 1.6E-17 5.3E-22 162.8 -3.1 149 14-225 10-163 (219)
113 2cvh_A DNA repair and recombin 99.6 7.3E-16 2.5E-20 149.6 6.0 155 7-209 6-185 (220)
114 2qag_C Septin-7; cell cycle, c 99.6 9.5E-17 3.3E-21 171.5 -0.6 153 4-192 21-177 (418)
115 3kta_B Chromosome segregation 99.6 1.4E-14 4.6E-19 136.5 13.3 91 129-222 61-158 (173)
116 1pui_A ENGB, probable GTP-bind 99.5 7.1E-17 2.4E-21 155.6 -5.0 165 8-184 16-202 (210)
117 2ewv_A Twitching motility prot 99.5 1E-15 3.4E-20 161.8 2.2 130 9-207 127-257 (372)
118 1zp6_A Hypothetical protein AT 99.5 1.6E-15 5.6E-20 144.2 1.6 153 16-190 5-159 (191)
119 2rcn_A Probable GTPase ENGC; Y 99.5 3.1E-15 1.1E-19 156.2 3.8 124 8-147 204-328 (358)
120 2qag_B Septin-6, protein NEDD5 99.5 4.8E-16 1.6E-20 165.6 -2.5 171 5-191 26-218 (427)
121 2bbw_A Adenylate kinase 4, AK4 99.5 1.6E-17 5.4E-22 165.4 -13.2 153 19-182 26-200 (246)
122 1lw7_A Transcriptional regulat 99.5 1E-17 3.5E-22 176.7 -16.9 162 9-207 157-342 (365)
123 1nij_A Hypothetical protein YJ 99.5 5.5E-18 1.9E-22 175.4 -19.7 162 21-201 5-197 (318)
124 2gza_A Type IV secretion syste 99.5 5.7E-15 2E-19 155.4 2.8 137 9-210 164-303 (361)
125 1n0w_A DNA repair protein RAD5 99.5 7E-14 2.4E-18 137.6 8.7 152 15-209 19-209 (243)
126 3auy_A DNA double-strand break 99.4 2.7E-13 9.2E-18 143.2 12.1 77 128-207 276-359 (371)
127 1htw_A HI0065; nucleotide-bind 99.4 4.3E-15 1.5E-19 138.0 -2.5 78 6-89 19-97 (158)
128 2yhs_A FTSY, cell division pro 99.4 9E-15 3.1E-19 157.7 -0.5 153 10-191 283-448 (503)
129 3e70_C DPA, signal recognition 99.4 3.2E-14 1.1E-18 147.4 0.8 142 17-191 126-278 (328)
130 2qm8_A GTPase/ATPase; G protei 99.4 8.9E-16 3E-20 160.0 -11.0 162 6-180 41-260 (337)
131 2kjq_A DNAA-related protein; s 99.4 2.5E-13 8.5E-18 124.8 6.3 46 148-194 81-127 (149)
132 3ec2_A DNA replication protein 99.4 1.2E-13 4.2E-18 130.3 4.3 49 147-195 97-146 (180)
133 1udx_A The GTP-binding protein 99.4 1.5E-14 5.3E-19 154.3 -2.7 170 10-203 147-319 (416)
134 2f1r_A Molybdopterin-guanine d 99.4 2.9E-15 9.9E-20 141.0 -8.9 137 21-182 3-163 (171)
135 1w1w_A Structural maintenance 99.3 1.5E-12 5.2E-17 140.1 10.2 76 130-207 331-410 (430)
136 2yv5_A YJEQ protein; hydrolase 99.3 5.4E-14 1.8E-18 144.4 -2.1 122 16-146 161-301 (302)
137 1odf_A YGR205W, hypothetical 3 99.3 5.5E-14 1.9E-18 143.4 -2.2 128 18-167 29-169 (290)
138 3lda_A DNA repair protein RAD5 99.3 7.4E-12 2.5E-16 133.0 12.0 62 149-210 272-364 (400)
139 1p9r_A General secretion pathw 99.3 7.6E-15 2.6E-19 156.9 -12.0 135 7-155 156-314 (418)
140 2oap_1 GSPE-2, type II secreti 99.3 1E-14 3.5E-19 159.8 -11.9 178 7-200 247-457 (511)
141 1sxj_E Activator 1 40 kDa subu 99.3 2.8E-12 9.6E-17 133.7 7.0 136 23-194 39-176 (354)
142 1ni3_A YCHF GTPase, YCHF GTP-b 99.2 4.6E-15 1.6E-19 157.0 -16.4 171 15-219 15-210 (392)
143 3c8u_A Fructokinase; YP_612366 99.2 1.2E-13 4.1E-18 133.7 -8.8 165 17-225 19-184 (208)
144 1in4_A RUVB, holliday junction 99.1 2.6E-13 8.8E-18 141.2 -9.2 153 5-181 29-195 (334)
145 1u0l_A Probable GTPase ENGC; p 99.1 1.8E-12 6.2E-17 132.9 -3.4 107 15-135 164-294 (301)
146 1lvg_A Guanylate kinase, GMP k 99.1 6.9E-15 2.4E-19 141.6 -20.2 152 18-208 2-173 (198)
147 1t9h_A YLOQ, probable GTPase E 99.1 3.9E-12 1.3E-16 130.3 -1.6 118 15-140 168-303 (307)
148 1sq5_A Pantothenate kinase; P- 99.1 9.9E-13 3.4E-17 135.3 -6.3 86 8-94 49-156 (308)
149 2x8a_A Nuclear valosin-contain 99.1 5.1E-14 1.7E-18 142.6 -17.4 128 6-161 32-164 (274)
150 1vma_A Cell division protein F 99.0 1.8E-10 6.2E-15 118.1 5.6 115 12-180 96-213 (306)
151 2dr3_A UPF0273 protein PH0284; 99.0 1.3E-09 4.6E-14 106.9 11.4 60 149-208 127-196 (247)
152 2r6a_A DNAB helicase, replicat 99.0 8.5E-10 2.9E-14 119.4 9.8 179 8-211 191-401 (454)
153 1ls1_A Signal recognition part 98.9 2.3E-09 8E-14 109.4 9.3 118 11-178 91-209 (295)
154 2zr9_A Protein RECA, recombina 98.9 1.2E-09 4.3E-14 114.0 7.2 148 15-216 56-237 (349)
155 2ius_A DNA translocase FTSK; n 98.9 6.8E-11 2.3E-15 128.8 -4.2 167 12-194 159-344 (512)
156 2px0_A Flagellar biosynthesis 98.9 2.2E-09 7.5E-14 109.6 7.0 141 18-214 103-247 (296)
157 1iy2_A ATP-dependent metallopr 98.8 1.6E-12 5.6E-17 131.3 -16.9 123 7-153 62-190 (278)
158 3euj_A Chromosome partition pr 98.8 7.2E-10 2.5E-14 119.9 2.3 52 7-61 17-68 (483)
159 1oix_A RAS-related protein RAB 98.8 6.7E-10 2.3E-14 105.4 1.7 140 22-178 31-189 (191)
160 1ixz_A ATP-dependent metallopr 98.8 2.5E-12 8.4E-17 128.1 -16.3 123 7-153 38-166 (254)
161 3k1j_A LON protease, ATP-depen 98.8 7.6E-11 2.6E-15 132.2 -6.5 161 5-177 45-227 (604)
162 3tr0_A Guanylate kinase, GMP k 98.8 1.8E-10 6E-15 110.3 -3.9 65 14-84 1-69 (205)
163 3lnc_A Guanylate kinase, GMP k 98.7 5.6E-10 1.9E-14 109.4 -4.7 38 7-44 14-52 (231)
164 2ce7_A Cell division protein F 98.6 5.7E-08 1.9E-12 105.3 8.8 59 135-193 93-165 (476)
165 1svm_A Large T antigen; AAA+ f 98.6 3.8E-11 1.3E-15 126.5 -16.7 144 7-161 156-312 (377)
166 3hr8_A Protein RECA; alpha and 98.6 3.5E-08 1.2E-12 102.9 4.9 71 15-87 56-128 (356)
167 1qhl_A Protein (cell division 98.5 2.3E-09 7.9E-14 105.1 -4.5 58 14-74 22-91 (227)
168 2f9l_A RAB11B, member RAS onco 98.5 5.1E-08 1.7E-12 92.7 4.7 37 141-179 130-166 (199)
169 4eun_A Thermoresistant glucoki 98.5 4E-09 1.4E-13 101.0 -3.4 62 9-76 18-82 (200)
170 2qtf_A Protein HFLX, GTP-bindi 98.5 1.6E-07 5.5E-12 98.5 8.5 151 19-180 177-353 (364)
171 4a1f_A DNAB helicase, replicat 98.4 1.9E-07 6.6E-12 96.6 5.0 129 8-190 34-164 (338)
172 2xau_A PRE-mRNA-splicing facto 98.3 4.7E-07 1.6E-11 104.0 7.6 73 129-202 187-261 (773)
173 3uie_A Adenylyl-sulfate kinase 98.3 1.3E-08 4.5E-13 97.4 -4.8 54 7-63 12-67 (200)
174 2j41_A Guanylate kinase; GMP, 98.2 3E-07 1E-11 87.6 2.8 30 15-44 1-30 (207)
175 2e87_A Hypothetical protein PH 98.2 1.9E-06 6.6E-11 90.0 8.8 62 130-193 229-293 (357)
176 1zu4_A FTSY; GTPase, signal re 98.2 2.4E-07 8.4E-12 95.4 1.4 77 10-88 95-185 (320)
177 4e22_A Cytidylate kinase; P-lo 98.2 1E-07 3.5E-12 94.8 -1.6 56 18-75 25-96 (252)
178 2dhr_A FTSH; AAA+ protein, hex 98.2 5.7E-09 2E-13 113.7 -11.8 129 7-161 53-187 (499)
179 3kta_A Chromosome segregation 98.2 5.5E-07 1.9E-11 84.3 3.3 33 11-44 18-50 (182)
180 2z4s_A Chromosomal replication 98.2 7.8E-07 2.7E-11 95.7 4.7 70 149-218 193-264 (440)
181 1jjv_A Dephospho-COA kinase; P 98.2 3.2E-07 1.1E-11 87.8 1.3 136 22-223 4-140 (206)
182 3vaa_A Shikimate kinase, SK; s 98.1 9.9E-07 3.4E-11 84.1 3.7 42 3-44 8-49 (199)
183 1v5w_A DMC1, meiotic recombina 98.1 1.7E-05 5.8E-10 82.4 13.2 139 15-191 117-273 (343)
184 3t34_A Dynamin-related protein 98.1 1.6E-05 5.5E-10 83.0 13.1 159 7-190 24-212 (360)
185 3a00_A Guanylate kinase, GMP k 98.1 7.3E-07 2.5E-11 84.1 2.0 25 20-44 1-25 (186)
186 1fnn_A CDC6P, cell division co 98.1 6.4E-06 2.2E-10 86.0 9.2 44 149-193 124-170 (389)
187 1kgd_A CASK, peripheral plasma 98.1 7.8E-07 2.7E-11 83.5 1.9 37 19-56 4-40 (180)
188 3bh0_A DNAB-like replicative h 98.1 4.6E-06 1.6E-10 85.6 7.4 131 8-190 56-189 (315)
189 2z43_A DNA repair and recombin 98.0 2.1E-05 7.2E-10 80.9 11.7 139 15-191 102-257 (324)
190 2dy1_A Elongation factor G; tr 98.0 1.8E-06 6.2E-11 97.6 3.6 131 14-193 3-137 (665)
191 1ega_A Protein (GTP-binding pr 98.0 5.7E-06 2E-10 84.3 6.3 63 133-203 101-169 (301)
192 2vp4_A Deoxynucleoside kinase; 98.0 2.2E-06 7.7E-11 83.7 2.7 44 11-60 11-54 (230)
193 3nwj_A ATSK2; P loop, shikimat 97.9 7.9E-07 2.7E-11 88.3 -1.4 40 5-44 30-72 (250)
194 3b9p_A CG5977-PA, isoform A; A 97.9 6E-05 2E-09 76.0 12.0 73 134-206 97-186 (297)
195 3tau_A Guanylate kinase, GMP k 97.9 4.5E-06 1.6E-10 80.2 2.8 27 18-44 6-32 (208)
196 1knq_A Gluconate kinase; ALFA/ 97.8 6.5E-06 2.2E-10 76.3 2.3 37 18-60 6-42 (175)
197 3ney_A 55 kDa erythrocyte memb 97.8 9.4E-06 3.2E-10 77.5 3.3 30 15-44 14-43 (197)
198 2qt1_A Nicotinamide riboside k 97.8 1.5E-05 5E-10 76.2 4.4 31 14-44 15-45 (207)
199 3tqc_A Pantothenate kinase; bi 97.8 2.3E-06 7.8E-11 88.0 -1.5 40 6-45 72-117 (321)
200 2q6t_A DNAB replication FORK h 97.7 9.2E-05 3.2E-09 79.5 10.8 170 9-208 189-397 (444)
201 1rz3_A Hypothetical protein rb 97.7 8E-06 2.7E-10 77.9 0.9 42 16-59 18-59 (201)
202 2qby_A CDC6 homolog 1, cell di 97.6 7.1E-06 2.4E-10 85.3 -0.5 27 18-44 43-69 (386)
203 1f2t_A RAD50 ABC-ATPase; DNA d 97.6 3.3E-05 1.1E-09 70.3 4.0 30 11-41 15-44 (149)
204 3kl4_A SRP54, signal recogniti 97.6 9.7E-05 3.3E-09 78.8 8.1 26 19-44 96-121 (433)
205 3cf0_A Transitional endoplasmi 97.6 9.7E-05 3.3E-09 75.0 7.2 29 16-44 45-73 (301)
206 3cr8_A Sulfate adenylyltranfer 97.5 1.2E-05 4.2E-10 88.6 -0.0 43 16-60 365-409 (552)
207 2pez_A Bifunctional 3'-phospho 97.5 9.7E-06 3.3E-10 75.6 -0.8 40 18-60 3-44 (179)
208 1lv7_A FTSH; alpha/beta domain 97.5 0.00035 1.2E-08 68.8 10.2 34 9-44 36-69 (257)
209 1cke_A CK, MSSA, protein (cyti 97.5 6E-06 2.1E-10 79.8 -2.8 56 20-75 5-74 (227)
210 2wjg_A FEOB, ferrous iron tran 97.5 4.9E-05 1.7E-09 70.6 3.3 22 22-43 9-30 (188)
211 1kag_A SKI, shikimate kinase I 97.4 4.5E-05 1.5E-09 70.3 2.6 26 19-44 3-28 (173)
212 3llm_A ATP-dependent RNA helic 97.4 3.1E-05 1.1E-09 75.6 1.3 66 134-201 162-228 (235)
213 1ypw_A Transitional endoplasmi 97.4 0.00013 4.4E-09 84.2 6.5 30 15-44 233-262 (806)
214 3lxx_A GTPase IMAP family memb 97.4 0.001 3.5E-08 64.7 11.3 43 149-191 111-155 (239)
215 2w58_A DNAI, primosome compone 97.3 0.00027 9.3E-09 66.8 6.4 24 21-44 55-78 (202)
216 2p67_A LAO/AO transport system 97.3 1.9E-05 6.4E-10 82.0 -2.1 50 6-57 42-91 (341)
217 1w1w_A Structural maintenance 97.3 9.6E-05 3.3E-09 79.0 3.4 30 15-44 21-50 (430)
218 1l8q_A Chromosomal replication 97.3 0.00081 2.8E-08 68.6 10.2 46 148-193 96-142 (324)
219 4eaq_A DTMP kinase, thymidylat 97.3 9E-05 3.1E-09 72.3 2.8 36 9-44 12-50 (229)
220 3qks_A DNA double-strand break 97.3 0.00014 5E-09 69.5 4.0 31 11-42 15-45 (203)
221 1u94_A RECA protein, recombina 97.3 0.0037 1.3E-07 65.0 14.9 28 15-42 58-85 (356)
222 2i1q_A DNA repair and recombin 97.2 0.0016 5.4E-08 66.6 11.6 28 15-42 93-120 (322)
223 1mky_A Probable GTP-binding pr 97.2 0.00023 7.8E-09 76.3 5.5 67 22-88 182-262 (439)
224 3bos_A Putative DNA replicatio 97.2 0.0002 6.7E-09 69.0 4.5 44 149-192 103-148 (242)
225 3bgw_A DNAB-like replicative h 97.2 0.00045 1.6E-08 74.1 7.4 34 9-42 186-219 (444)
226 3m6a_A ATP-dependent protease 97.2 4.3E-05 1.5E-09 84.2 -0.6 48 8-58 97-144 (543)
227 2b8t_A Thymidine kinase; deoxy 97.2 0.00075 2.6E-08 65.5 8.1 53 150-207 89-150 (223)
228 3h4m_A Proteasome-activating n 97.2 0.00059 2E-08 68.1 7.5 28 17-44 48-75 (285)
229 2www_A Methylmalonic aciduria 97.1 0.0001 3.6E-09 76.6 1.4 41 18-60 72-112 (349)
230 1m2o_B GTP-binding protein SAR 97.0 0.00048 1.6E-08 64.5 4.6 36 7-43 11-46 (190)
231 1f6b_A SAR1; gtpases, N-termin 97.0 0.00017 5.8E-09 68.2 1.4 37 6-43 12-48 (198)
232 2qor_A Guanylate kinase; phosp 97.0 0.00034 1.2E-08 66.6 3.1 29 16-44 8-36 (204)
233 1y63_A LMAJ004144AAA protein; 96.9 0.00038 1.3E-08 65.1 3.3 32 12-43 2-33 (184)
234 2gj8_A MNME, tRNA modification 96.9 0.00049 1.7E-08 63.4 3.4 27 18-44 2-28 (172)
235 3d8b_A Fidgetin-like protein 1 96.9 0.0057 2E-07 63.4 12.0 26 18-43 115-140 (357)
236 2qz4_A Paraplegin; AAA+, SPG7, 96.9 0.0045 1.5E-07 60.5 10.6 26 18-43 37-62 (262)
237 1m7g_A Adenylylsulfate kinase; 96.8 0.00022 7.4E-09 68.3 0.7 43 15-59 20-64 (211)
238 3auy_A DNA double-strand break 96.8 0.0006 2.1E-08 71.3 3.8 31 10-41 16-46 (371)
239 3ice_A Transcription terminati 96.8 0.00038 1.3E-08 72.7 2.1 32 12-43 166-197 (422)
240 2v1u_A Cell division control p 96.7 0.0012 4.1E-08 68.4 5.4 27 18-44 42-68 (387)
241 2ffh_A Protein (FFH); SRP54, s 96.7 0.00046 1.6E-08 73.5 2.0 46 11-60 91-136 (425)
242 2if2_A Dephospho-COA kinase; a 96.7 0.00062 2.1E-08 64.4 2.6 21 22-42 3-23 (204)
243 2qag_A Septin-2, protein NEDD5 96.6 0.00019 6.5E-09 75.0 -1.5 32 6-43 29-60 (361)
244 2ga8_A Hypothetical 39.9 kDa p 96.6 0.00023 7.9E-09 73.7 -0.9 37 8-44 10-48 (359)
245 3lxw_A GTPase IMAP family memb 96.6 0.005 1.7E-07 60.4 8.4 23 22-44 23-45 (247)
246 2wji_A Ferrous iron transport 96.6 0.0011 3.9E-08 60.2 3.5 23 22-44 5-27 (165)
247 1xwi_A SKD1 protein; VPS4B, AA 96.6 0.022 7.6E-07 58.1 13.4 28 17-44 42-69 (322)
248 1sxj_C Activator 1 40 kDa subu 96.5 0.00027 9.1E-09 72.9 -1.2 39 6-44 30-70 (340)
249 2p5t_B PEZT; postsegregational 96.5 0.00062 2.1E-08 67.2 1.4 47 9-60 22-68 (253)
250 1j8m_F SRP54, signal recogniti 96.5 0.00034 1.2E-08 71.0 -0.5 46 11-59 89-135 (297)
251 2yvu_A Probable adenylyl-sulfa 96.5 0.0014 4.8E-08 61.0 3.7 29 16-44 9-37 (186)
252 3cm0_A Adenylate kinase; ATP-b 96.5 0.0013 4.4E-08 61.0 3.4 25 18-42 2-26 (186)
253 1q57_A DNA primase/helicase; d 96.5 0.018 6.2E-07 62.5 13.0 34 9-42 231-264 (503)
254 2r8r_A Sensor protein; KDPD, P 96.5 0.0028 9.6E-08 61.4 5.7 48 143-190 77-125 (228)
255 3t61_A Gluconokinase; PSI-biol 96.4 0.0011 3.8E-08 62.7 2.5 24 20-43 18-41 (202)
256 2ohf_A Protein OLA1, GTP-bindi 96.4 0.0014 4.9E-08 68.9 3.3 47 12-58 14-69 (396)
257 3cmw_A Protein RECA, recombina 96.4 0.011 3.9E-07 72.4 11.3 28 16-43 728-755 (1706)
258 1qhx_A CPT, protein (chloramph 96.4 0.002 6.8E-08 59.3 3.7 25 20-44 3-27 (178)
259 2qgz_A Helicase loader, putati 96.4 0.0037 1.3E-07 63.6 6.0 51 148-198 212-264 (308)
260 3kb2_A SPBC2 prophage-derived 96.4 0.0018 6.2E-08 59.0 3.4 23 22-44 3-25 (173)
261 2vhj_A Ntpase P4, P4; non- hyd 96.3 0.0063 2.2E-07 62.1 7.6 28 15-42 118-145 (331)
262 2zej_A Dardarin, leucine-rich 96.3 0.0018 6.1E-08 60.0 3.2 22 22-43 4-25 (184)
263 1np6_A Molybdopterin-guanine d 96.3 0.0017 5.9E-08 60.4 3.0 38 21-58 7-45 (174)
264 1q3t_A Cytidylate kinase; nucl 96.2 0.0021 7E-08 62.6 3.2 28 16-43 12-39 (236)
265 1kht_A Adenylate kinase; phosp 96.2 0.0026 9E-08 58.9 3.6 25 19-43 2-26 (192)
266 1xp8_A RECA protein, recombina 96.2 0.039 1.3E-06 57.4 12.8 28 15-42 69-96 (366)
267 3r20_A Cytidylate kinase; stru 96.1 0.0028 9.5E-08 61.9 3.4 24 20-43 9-32 (233)
268 2rhm_A Putative kinase; P-loop 96.1 0.0026 9E-08 59.1 3.1 26 18-43 3-28 (193)
269 1ex7_A Guanylate kinase; subst 96.1 0.0029 9.9E-08 59.6 3.2 22 22-43 3-24 (186)
270 1xx6_A Thymidine kinase; NESG, 96.1 0.011 3.9E-07 55.7 7.3 53 150-207 81-142 (191)
271 3lw7_A Adenylate kinase relate 96.0 0.0037 1.2E-07 56.7 3.3 19 22-40 3-21 (179)
272 2ze6_A Isopentenyl transferase 95.9 0.0038 1.3E-07 61.6 3.6 24 21-44 2-25 (253)
273 3trf_A Shikimate kinase, SK; a 95.9 0.0043 1.5E-07 57.4 3.5 25 19-43 4-28 (185)
274 1vht_A Dephospho-COA kinase; s 95.9 0.0045 1.5E-07 59.1 3.8 24 19-42 3-26 (218)
275 2v54_A DTMP kinase, thymidylat 95.9 0.0045 1.5E-07 58.2 3.7 26 19-44 3-28 (204)
276 2plr_A DTMP kinase, probable t 95.9 0.0049 1.7E-07 58.1 3.8 26 19-44 3-28 (213)
277 3co5_A Putative two-component 95.8 0.015 5E-07 51.9 6.7 42 150-192 75-116 (143)
278 3iij_A Coilin-interacting nucl 95.8 0.004 1.4E-07 57.5 3.0 25 18-42 9-33 (180)
279 2jaq_A Deoxyguanosine kinase; 95.8 0.0044 1.5E-07 58.0 3.4 23 22-44 2-24 (205)
280 2j9r_A Thymidine kinase; TK1, 95.8 0.018 6.3E-07 55.2 7.6 53 150-207 101-162 (214)
281 1gvn_B Zeta; postsegregational 95.8 0.0047 1.6E-07 62.2 3.4 37 17-57 30-66 (287)
282 1ly1_A Polynucleotide kinase; 95.8 0.0054 1.9E-07 56.2 3.6 22 21-42 3-24 (181)
283 2wwf_A Thymidilate kinase, put 95.7 0.0052 1.8E-07 58.1 3.4 26 18-43 8-33 (212)
284 3k53_A Ferrous iron transport 95.6 0.0048 1.6E-07 61.3 2.9 23 22-44 5-27 (271)
285 1via_A Shikimate kinase; struc 95.6 0.0056 1.9E-07 56.3 3.2 22 22-43 6-27 (175)
286 2c95_A Adenylate kinase 1; tra 95.6 0.0054 1.9E-07 57.1 3.1 26 18-43 7-32 (196)
287 1gtv_A TMK, thymidylate kinase 95.6 0.0027 9.3E-08 60.2 1.0 23 22-44 2-24 (214)
288 3vfd_A Spastin; ATPase, microt 95.6 0.057 1.9E-06 56.4 11.2 25 19-43 147-171 (389)
289 1nn5_A Similar to deoxythymidy 95.6 0.006 2E-07 57.7 3.2 27 17-43 6-32 (215)
290 2orv_A Thymidine kinase; TP4A 95.6 0.065 2.2E-06 51.9 10.4 54 148-207 88-150 (234)
291 3ihw_A Centg3; RAS, centaurin, 95.6 0.0097 3.3E-07 55.1 4.5 22 22-43 22-43 (184)
292 3io5_A Recombination and repai 95.5 0.054 1.8E-06 55.1 10.1 26 15-41 24-49 (333)
293 1uf9_A TT1252 protein; P-loop, 95.5 0.0069 2.4E-07 56.7 3.4 23 20-42 8-30 (203)
294 3cmu_A Protein RECA, recombina 95.5 0.033 1.1E-06 69.2 10.1 72 140-211 449-554 (2050)
295 1tev_A UMP-CMP kinase; ploop, 95.5 0.0078 2.7E-07 55.8 3.7 24 19-42 2-25 (196)
296 1xjc_A MOBB protein homolog; s 95.5 0.0075 2.6E-07 55.8 3.4 24 21-44 5-28 (169)
297 1nks_A Adenylate kinase; therm 95.5 0.0068 2.3E-07 56.1 3.2 23 22-44 3-25 (194)
298 2nzj_A GTP-binding protein REM 95.4 0.0083 2.8E-07 54.3 3.3 23 22-44 6-28 (175)
299 1jal_A YCHF protein; nucleotid 95.4 0.012 3.9E-07 61.3 4.7 38 20-57 2-48 (363)
300 3cmw_A Protein RECA, recombina 95.3 0.15 5.2E-06 62.6 15.0 152 10-215 371-558 (1706)
301 2erx_A GTP-binding protein DI- 95.3 0.0086 3E-07 53.8 3.3 22 22-43 5-26 (172)
302 2ged_A SR-beta, signal recogni 95.3 0.007 2.4E-07 56.0 2.7 23 22-44 50-72 (193)
303 1aky_A Adenylate kinase; ATP:A 95.3 0.0094 3.2E-07 57.0 3.7 26 18-43 2-27 (220)
304 3q72_A GTP-binding protein RAD 95.3 0.0068 2.3E-07 54.4 2.6 23 22-44 4-26 (166)
305 1ko7_A HPR kinase/phosphatase; 95.3 0.012 4E-07 59.9 4.5 36 7-43 132-167 (314)
306 2bwj_A Adenylate kinase 5; pho 95.3 0.0069 2.3E-07 56.5 2.6 27 17-43 9-35 (199)
307 1z2a_A RAS-related protein RAB 95.3 0.0074 2.5E-07 54.1 2.7 23 22-44 7-29 (168)
308 3q85_A GTP-binding protein REM 95.3 0.0094 3.2E-07 53.6 3.3 21 23-43 5-25 (169)
309 3hu3_A Transitional endoplasmi 95.2 0.025 8.6E-07 61.3 7.1 26 18-43 236-261 (489)
310 3tw8_B RAS-related protein RAB 95.2 0.009 3.1E-07 54.2 3.0 23 22-44 11-33 (181)
311 2z0h_A DTMP kinase, thymidylat 95.2 0.01 3.5E-07 55.3 3.4 23 22-44 2-24 (197)
312 1kao_A RAP2A; GTP-binding prot 95.2 0.0085 2.9E-07 53.5 2.7 22 22-43 5-26 (167)
313 2vli_A Antibiotic resistance p 95.2 0.0073 2.5E-07 55.6 2.3 26 19-44 4-29 (183)
314 2dyk_A GTP-binding protein; GT 95.2 0.0086 2.9E-07 53.3 2.7 23 22-44 3-25 (161)
315 3b1v_A Ferrous iron uptake tra 95.2 0.01 3.6E-07 59.2 3.6 22 22-43 5-26 (272)
316 1u8z_A RAS-related protein RAL 95.2 0.0087 3E-07 53.4 2.7 23 22-44 6-28 (168)
317 4ag6_A VIRB4 ATPase, type IV s 95.1 0.0061 2.1E-07 64.0 1.8 45 150-194 262-309 (392)
318 1fzq_A ADP-ribosylation factor 95.1 0.0084 2.9E-07 55.3 2.6 22 22-43 18-39 (181)
319 2ce2_X GTPase HRAS; signaling 95.1 0.0081 2.8E-07 53.4 2.3 23 22-44 5-27 (166)
320 2lkc_A Translation initiation 95.1 0.013 4.5E-07 53.1 3.8 26 19-44 7-32 (178)
321 1z0j_A RAB-22, RAS-related pro 95.1 0.0093 3.2E-07 53.5 2.7 23 22-44 8-30 (170)
322 3iev_A GTP-binding protein ERA 95.1 0.01 3.5E-07 60.2 3.3 23 22-44 12-34 (308)
323 1zd8_A GTP:AMP phosphotransfer 95.1 0.011 3.6E-07 57.0 3.2 26 18-43 5-30 (227)
324 1z08_A RAS-related protein RAB 95.1 0.0095 3.2E-07 53.6 2.7 22 22-43 8-29 (170)
325 2cdn_A Adenylate kinase; phosp 95.1 0.013 4.3E-07 55.2 3.7 25 19-43 19-43 (201)
326 1ek0_A Protein (GTP-binding pr 95.1 0.0096 3.3E-07 53.3 2.7 23 22-44 5-27 (170)
327 1svi_A GTP-binding protein YSX 95.0 0.0095 3.2E-07 55.1 2.7 22 22-43 25-46 (195)
328 1c1y_A RAS-related protein RAP 95.0 0.0098 3.4E-07 53.2 2.7 22 22-43 5-26 (167)
329 1wms_A RAB-9, RAB9, RAS-relate 95.0 0.01 3.4E-07 53.9 2.7 22 22-43 9-30 (177)
330 1ky3_A GTP-binding protein YPT 95.0 0.01 3.5E-07 53.9 2.7 23 22-44 10-32 (182)
331 4dsu_A GTPase KRAS, isoform 2B 95.0 0.011 3.6E-07 54.3 2.9 23 22-44 6-28 (189)
332 1g16_A RAS-related protein SEC 95.0 0.009 3.1E-07 53.6 2.3 22 23-44 6-27 (170)
333 3ake_A Cytidylate kinase; CMP 95.0 0.012 4.3E-07 55.1 3.4 23 22-44 4-26 (208)
334 3pqc_A Probable GTP-binding pr 95.0 0.01 3.5E-07 54.7 2.7 23 22-44 25-47 (195)
335 3tqf_A HPR(Ser) kinase; transf 94.9 0.021 7.3E-07 52.9 4.6 36 6-42 3-38 (181)
336 3fb4_A Adenylate kinase; psych 94.9 0.013 4.5E-07 55.6 3.4 21 22-42 2-22 (216)
337 2cxx_A Probable GTP-binding pr 94.9 0.011 3.8E-07 54.3 2.7 22 23-44 4-25 (190)
338 1ukz_A Uridylate kinase; trans 94.9 0.014 4.8E-07 54.8 3.5 25 19-43 14-38 (203)
339 2pbr_A DTMP kinase, thymidylat 94.9 0.014 4.7E-07 54.1 3.4 22 22-43 2-23 (195)
340 1zuh_A Shikimate kinase; alpha 94.9 0.015 5.1E-07 52.9 3.5 24 20-43 7-30 (168)
341 1zak_A Adenylate kinase; ATP:A 94.9 0.011 3.7E-07 56.6 2.7 25 19-43 4-28 (222)
342 2fn4_A P23, RAS-related protei 94.9 0.01 3.5E-07 53.8 2.4 22 22-43 11-32 (181)
343 2hxs_A RAB-26, RAS-related pro 94.9 0.013 4.6E-07 53.1 3.1 22 22-43 8-29 (178)
344 1r2q_A RAS-related protein RAB 94.9 0.012 4.1E-07 52.7 2.7 22 22-43 8-29 (170)
345 1e6c_A Shikimate kinase; phosp 94.8 0.013 4.4E-07 53.4 2.9 23 21-43 3-25 (173)
346 3a4m_A L-seryl-tRNA(SEC) kinas 94.8 0.016 5.5E-07 57.2 3.8 25 19-43 3-27 (260)
347 3clv_A RAB5 protein, putative; 94.8 0.012 4.1E-07 54.3 2.7 23 22-44 9-31 (208)
348 1upt_A ARL1, ADP-ribosylation 94.8 0.012 4.2E-07 52.8 2.7 22 22-43 9-30 (171)
349 1moz_A ARL1, ADP-ribosylation 94.8 0.0086 3E-07 54.7 1.6 24 19-42 17-40 (183)
350 2oil_A CATX-8, RAS-related pro 94.8 0.013 4.3E-07 54.4 2.7 23 22-44 27-49 (193)
351 3dl0_A Adenylate kinase; phosp 94.8 0.015 5.3E-07 55.2 3.4 22 22-43 2-23 (216)
352 1wf3_A GTP-binding protein; GT 94.8 0.015 5.2E-07 58.8 3.5 26 18-44 6-31 (301)
353 3bc1_A RAS-related protein RAB 94.8 0.013 4.4E-07 53.8 2.7 22 22-43 13-34 (195)
354 1r8s_A ADP-ribosylation factor 94.7 0.013 4.5E-07 52.4 2.7 21 23-43 3-23 (164)
355 2pt5_A Shikimate kinase, SK; a 94.7 0.017 5.8E-07 52.3 3.5 22 22-43 2-23 (168)
356 3t5d_A Septin-7; GTP-binding p 94.7 0.012 4.2E-07 58.4 2.7 22 22-43 10-31 (274)
357 3tlx_A Adenylate kinase 2; str 94.7 0.017 6E-07 56.3 3.7 25 18-42 27-51 (243)
358 1qf9_A UMP/CMP kinase, protein 94.7 0.016 5.5E-07 53.5 3.3 23 20-42 6-28 (194)
359 2iyv_A Shikimate kinase, SK; t 94.7 0.014 4.6E-07 54.0 2.7 23 21-43 3-25 (184)
360 2qmh_A HPR kinase/phosphorylas 94.7 0.028 9.5E-07 53.3 4.8 36 7-43 22-57 (205)
361 2g6b_A RAS-related protein RAB 94.6 0.014 4.9E-07 53.0 2.7 23 22-44 12-34 (180)
362 3dm5_A SRP54, signal recogniti 94.6 0.25 8.7E-06 52.5 12.7 26 19-44 99-124 (443)
363 3iby_A Ferrous iron transport 94.6 0.015 5.1E-07 57.4 2.9 22 22-43 3-24 (256)
364 2a9k_A RAS-related protein RAL 94.6 0.015 5E-07 53.1 2.7 23 22-44 20-42 (187)
365 2y8e_A RAB-protein 6, GH09086P 94.6 0.013 4.4E-07 53.0 2.3 22 22-43 16-37 (179)
366 1z0f_A RAB14, member RAS oncog 94.6 0.015 5E-07 52.7 2.7 23 22-44 17-39 (179)
367 1ksh_A ARF-like protein 2; sma 94.6 0.017 5.8E-07 53.0 3.1 26 19-44 17-42 (186)
368 3cbq_A GTP-binding protein REM 94.6 0.013 4.6E-07 54.8 2.4 22 22-43 25-46 (195)
369 3t1o_A Gliding protein MGLA; G 94.6 0.015 5E-07 53.6 2.7 23 22-44 16-38 (198)
370 3con_A GTPase NRAS; structural 94.6 0.015 5.2E-07 53.6 2.7 23 22-44 23-45 (190)
371 2efe_B Small GTP-binding prote 94.6 0.016 5.3E-07 52.8 2.7 23 22-44 14-36 (181)
372 3a8t_A Adenylate isopentenyltr 94.5 0.028 9.5E-07 57.7 4.8 26 19-44 39-64 (339)
373 2xtp_A GTPase IMAP family memb 94.5 0.017 5.8E-07 56.6 2.9 23 22-44 24-46 (260)
374 1nrj_B SR-beta, signal recogni 94.5 0.016 5.5E-07 54.8 2.7 23 22-44 14-36 (218)
375 2dby_A GTP-binding protein; GD 94.4 0.015 5.3E-07 60.5 2.7 21 23-43 4-24 (368)
376 2bov_A RAla, RAS-related prote 94.4 0.017 5.7E-07 53.9 2.7 23 22-44 16-38 (206)
377 1vg8_A RAS-related protein RAB 94.4 0.017 5.8E-07 53.9 2.7 23 22-44 10-32 (207)
378 2gf9_A RAS-related protein RAB 94.4 0.017 5.8E-07 53.3 2.7 23 22-44 24-46 (189)
379 3kkq_A RAS-related protein M-R 94.4 0.018 6.1E-07 52.6 2.8 22 22-43 20-41 (183)
380 1zbd_A Rabphilin-3A; G protein 94.4 0.021 7E-07 53.3 3.3 23 22-44 10-32 (203)
381 3bwd_D RAC-like GTP-binding pr 94.4 0.021 7.1E-07 52.0 3.2 22 22-43 10-31 (182)
382 2bme_A RAB4A, RAS-related prot 94.4 0.015 5.2E-07 53.2 2.3 23 22-44 12-34 (186)
383 3a1s_A Iron(II) transport prot 94.4 0.02 6.9E-07 56.5 3.3 22 22-43 7-28 (258)
384 2il1_A RAB12; G-protein, GDP, 94.4 0.019 6.5E-07 53.3 2.9 22 22-43 28-49 (192)
385 3tkl_A RAS-related protein RAB 94.4 0.018 6E-07 53.2 2.7 23 22-44 18-40 (196)
386 1jwy_B Dynamin A GTPase domain 94.4 0.023 7.9E-07 57.3 3.7 23 22-44 26-48 (315)
387 2grj_A Dephospho-COA kinase; T 94.3 0.023 7.8E-07 53.6 3.4 23 20-42 12-34 (192)
388 3v9p_A DTMP kinase, thymidylat 94.3 0.019 6.3E-07 55.8 2.8 29 16-44 21-49 (227)
389 2gf0_A GTP-binding protein DI- 94.3 0.017 5.7E-07 53.5 2.4 22 22-43 10-31 (199)
390 3llu_A RAS-related GTP-binding 94.3 0.021 7.3E-07 53.1 3.1 23 22-44 22-44 (196)
391 1m7b_A RND3/RHOE small GTP-bin 94.3 0.017 5.7E-07 53.2 2.3 22 22-43 9-30 (184)
392 1mh1_A RAC1; GTP-binding, GTPa 94.3 0.019 6.5E-07 52.3 2.7 22 22-43 7-28 (186)
393 3i8s_A Ferrous iron transport 94.3 0.02 6.7E-07 57.1 2.9 22 22-43 5-26 (274)
394 1jbk_A CLPB protein; beta barr 94.3 0.026 9E-07 51.4 3.6 26 19-44 42-67 (195)
395 2fg5_A RAB-22B, RAS-related pr 94.3 0.017 5.8E-07 53.6 2.4 23 22-44 25-47 (192)
396 2xb4_A Adenylate kinase; ATP-b 94.3 0.024 8.1E-07 54.5 3.4 21 22-42 2-22 (223)
397 2cjw_A GTP-binding protein GEM 94.2 0.019 6.6E-07 53.5 2.7 21 22-42 8-28 (192)
398 1z06_A RAS-related protein RAB 94.2 0.02 6.8E-07 52.8 2.7 22 22-43 22-43 (189)
399 4edh_A DTMP kinase, thymidylat 94.2 0.027 9.3E-07 54.0 3.7 27 18-44 4-30 (213)
400 2qu8_A Putative nucleolar GTP- 94.2 0.022 7.5E-07 54.6 3.1 23 21-43 30-52 (228)
401 4dhe_A Probable GTP-binding pr 94.2 0.012 4E-07 55.9 1.1 23 22-44 31-53 (223)
402 3be4_A Adenylate kinase; malar 94.2 0.023 7.9E-07 54.2 3.2 25 19-43 4-28 (217)
403 4bas_A ADP-ribosylation factor 94.2 0.022 7.7E-07 52.6 3.0 23 22-44 19-41 (199)
404 1zj6_A ADP-ribosylation factor 94.2 0.022 7.5E-07 52.4 2.9 23 21-43 17-39 (187)
405 2o52_A RAS-related protein RAB 94.2 0.022 7.4E-07 53.4 2.9 22 22-43 27-48 (200)
406 2h57_A ADP-ribosylation factor 94.2 0.017 5.8E-07 53.3 2.1 23 22-44 23-45 (190)
407 2aka_B Dynamin-1; fusion prote 94.2 0.026 9E-07 56.2 3.6 23 22-44 28-50 (299)
408 2a5j_A RAS-related protein RAB 94.1 0.021 7.2E-07 52.8 2.7 23 22-44 23-45 (191)
409 1njg_A DNA polymerase III subu 94.1 0.0072 2.5E-07 57.4 -0.6 42 150-193 126-167 (250)
410 2f7s_A C25KG, RAS-related prot 94.1 0.026 8.9E-07 53.3 3.3 23 22-44 27-49 (217)
411 3oes_A GTPase rhebl1; small GT 94.1 0.019 6.5E-07 53.7 2.3 23 22-44 26-48 (201)
412 2h17_A ADP-ribosylation factor 94.1 0.02 7E-07 52.4 2.4 22 22-43 23-44 (181)
413 4fcw_A Chaperone protein CLPB; 94.1 0.024 8.3E-07 56.8 3.2 24 21-44 48-71 (311)
414 1zd9_A ADP-ribosylation factor 94.1 0.022 7.6E-07 52.6 2.7 22 22-43 24-45 (188)
415 1a7j_A Phosphoribulokinase; tr 94.0 0.014 4.8E-07 58.8 1.3 24 19-42 4-27 (290)
416 3umf_A Adenylate kinase; rossm 94.0 0.029 1E-06 54.0 3.6 28 16-43 25-52 (217)
417 2atv_A RERG, RAS-like estrogen 94.0 0.023 7.8E-07 52.8 2.7 22 22-43 30-51 (196)
418 1x3s_A RAS-related protein RAB 94.0 0.023 7.7E-07 52.4 2.7 23 22-44 17-39 (195)
419 3dz8_A RAS-related protein RAB 94.0 0.02 6.8E-07 53.0 2.3 23 22-44 25-47 (191)
420 2wsm_A Hydrogenase expression/ 94.0 0.022 7.4E-07 54.1 2.6 23 21-43 31-53 (221)
421 3reg_A RHO-like small GTPase; 94.0 0.023 7.8E-07 52.6 2.7 23 22-44 25-47 (194)
422 2f6r_A COA synthase, bifunctio 94.0 0.025 8.5E-07 56.6 3.1 22 20-41 75-96 (281)
423 3cph_A RAS-related protein SEC 94.0 0.023 7.9E-07 53.3 2.7 23 21-43 21-43 (213)
424 2p5s_A RAS and EF-hand domain 94.0 0.023 8E-07 52.9 2.7 24 21-44 29-52 (199)
425 2bcg_Y Protein YP2, GTP-bindin 94.0 0.021 7E-07 53.5 2.3 23 22-44 10-32 (206)
426 2q3h_A RAS homolog gene family 94.0 0.029 9.8E-07 52.2 3.3 24 20-43 20-43 (201)
427 3t5g_A GTP-binding protein RHE 93.9 0.025 8.7E-07 51.5 2.8 21 22-42 8-28 (181)
428 1ltq_A Polynucleotide kinase; 93.9 0.03 1E-06 56.0 3.6 22 21-42 3-24 (301)
429 1uj2_A Uridine-cytidine kinase 93.9 0.033 1.1E-06 54.5 3.7 24 21-44 23-46 (252)
430 2ew1_A RAS-related protein RAB 93.9 0.022 7.4E-07 53.7 2.3 22 22-43 28-49 (201)
431 1ak2_A Adenylate kinase isoenz 93.9 0.033 1.1E-06 53.7 3.7 26 18-43 14-39 (233)
432 2iwr_A Centaurin gamma 1; ANK 93.9 0.02 6.8E-07 52.0 1.9 22 22-43 9-30 (178)
433 1e4v_A Adenylate kinase; trans 93.9 0.028 9.6E-07 53.4 3.0 21 22-42 2-22 (214)
434 2j1l_A RHO-related GTP-binding 93.8 0.028 9.5E-07 53.3 2.9 22 22-43 36-57 (214)
435 3lv8_A DTMP kinase, thymidylat 93.8 0.031 1.1E-06 54.5 3.3 26 19-44 26-51 (236)
436 3c5c_A RAS-like protein 12; GD 93.8 0.027 9.3E-07 52.0 2.7 22 22-43 23-44 (187)
437 2fv8_A H6, RHO-related GTP-bin 93.8 0.024 8.2E-07 53.3 2.4 24 21-44 26-49 (207)
438 2fu5_C RAS-related protein RAB 93.8 0.019 6.6E-07 52.4 1.6 22 22-43 10-31 (183)
439 2b6h_A ADP-ribosylation factor 93.8 0.027 9.1E-07 52.4 2.6 23 21-43 30-52 (192)
440 3zvl_A Bifunctional polynucleo 93.7 0.032 1.1E-06 59.0 3.5 25 18-42 256-280 (416)
441 3exa_A TRNA delta(2)-isopenten 93.7 0.038 1.3E-06 56.1 3.8 25 20-44 3-27 (322)
442 1sky_E F1-ATPase, F1-ATP synth 93.7 0.039 1.3E-06 59.1 4.0 34 9-43 141-174 (473)
443 2fh5_B SR-beta, signal recogni 93.7 0.028 9.7E-07 52.9 2.7 22 22-43 9-30 (214)
444 1gwn_A RHO-related GTP-binding 93.7 0.026 8.8E-07 53.3 2.3 23 22-44 30-52 (205)
445 3def_A T7I23.11 protein; chlor 93.7 0.031 1E-06 55.1 2.9 23 22-44 38-60 (262)
446 2zts_A Putative uncharacterize 93.6 0.046 1.6E-06 52.6 4.1 60 148-207 133-206 (251)
447 4tmk_A Protein (thymidylate ki 93.6 0.036 1.2E-06 53.1 3.3 26 19-44 2-27 (213)
448 3tmk_A Thymidylate kinase; pho 93.6 0.036 1.2E-06 53.3 3.2 27 18-44 3-29 (216)
449 2g3y_A GTP-binding protein GEM 93.6 0.036 1.2E-06 52.9 3.3 22 22-43 39-60 (211)
450 2p65_A Hypothetical protein PF 93.6 0.032 1.1E-06 50.8 2.8 26 19-44 42-67 (187)
451 1h65_A Chloroplast outer envel 93.6 0.031 1.1E-06 55.3 2.9 23 22-44 41-63 (270)
452 3ld9_A DTMP kinase, thymidylat 93.6 0.042 1.4E-06 53.1 3.7 27 18-44 19-45 (223)
453 3d3q_A TRNA delta(2)-isopenten 93.6 0.036 1.2E-06 57.0 3.4 24 21-44 8-31 (340)
454 2gco_A H9, RHO-related GTP-bin 93.5 0.029 9.8E-07 52.5 2.3 23 22-44 27-49 (201)
455 2ocp_A DGK, deoxyguanosine kin 93.4 0.043 1.5E-06 53.2 3.4 26 19-44 1-26 (241)
456 4djt_A GTP-binding nuclear pro 93.4 0.019 6.4E-07 54.3 0.8 22 22-43 13-34 (218)
457 3cnl_A YLQF, putative uncharac 93.3 0.038 1.3E-06 54.7 3.0 24 21-44 100-123 (262)
458 2atx_A Small GTP binding prote 93.3 0.033 1.1E-06 51.5 2.4 22 22-43 20-41 (194)
459 3sr0_A Adenylate kinase; phosp 93.3 0.046 1.6E-06 52.1 3.4 22 22-43 2-23 (206)
460 1p5z_B DCK, deoxycytidine kina 93.2 0.031 1E-06 55.1 2.2 27 18-44 22-48 (263)
461 1sxj_D Activator 1 41 kDa subu 93.2 0.014 4.7E-07 59.7 -0.4 42 150-193 133-174 (353)
462 3crm_A TRNA delta(2)-isopenten 93.2 0.047 1.6E-06 55.7 3.6 24 21-44 6-29 (323)
463 2h92_A Cytidylate kinase; ross 93.2 0.042 1.4E-06 52.2 3.0 25 20-44 3-27 (219)
464 2x77_A ADP-ribosylation factor 93.2 0.027 9.1E-07 51.9 1.6 23 20-42 22-44 (189)
465 2yc2_C IFT27, small RAB-relate 93.1 0.02 6.8E-07 53.4 0.5 22 22-43 22-43 (208)
466 3cpj_B GTP-binding protein YPT 93.1 0.041 1.4E-06 52.4 2.8 23 22-44 15-37 (223)
467 2hup_A RAS-related protein RAB 93.0 0.038 1.3E-06 51.7 2.4 22 22-43 31-52 (201)
468 2hf9_A Probable hydrogenase ni 93.0 0.047 1.6E-06 51.9 3.0 23 21-43 39-61 (226)
469 4gzl_A RAS-related C3 botulinu 93.0 0.039 1.3E-06 51.8 2.4 23 21-43 31-53 (204)
470 4dcu_A GTP-binding protein ENG 93.0 0.04 1.4E-06 59.0 2.7 52 136-191 88-140 (456)
471 3pxi_A Negative regulator of g 92.9 0.22 7.4E-06 56.8 8.9 22 22-43 523-544 (758)
472 3foz_A TRNA delta(2)-isopenten 92.9 0.061 2.1E-06 54.5 3.8 24 20-43 10-33 (316)
473 3cmu_A Protein RECA, recombina 92.8 0.19 6.5E-06 62.6 8.6 35 8-42 1067-1103(2050)
474 3q3j_B RHO-related GTP-binding 92.8 0.048 1.6E-06 51.7 2.7 22 22-43 29-50 (214)
475 2x2e_A Dynamin-1; nitration, h 92.7 0.049 1.7E-06 56.2 2.8 23 22-44 33-55 (353)
476 2j0v_A RAC-like GTP-binding pr 92.5 0.047 1.6E-06 51.2 2.3 22 22-43 11-32 (212)
477 2r62_A Cell division protease 92.5 0.02 6.8E-07 56.3 -0.4 27 15-43 41-67 (268)
478 2orw_A Thymidine kinase; TMTK, 92.5 0.068 2.3E-06 49.8 3.3 53 150-207 76-137 (184)
479 3eph_A TRNA isopentenyltransfe 92.4 0.065 2.2E-06 56.3 3.4 24 20-43 2-25 (409)
480 1puj_A YLQF, conserved hypothe 92.2 0.075 2.6E-06 53.1 3.5 24 21-44 121-144 (282)
481 3euj_A Chromosome partition pr 92.2 0.21 7.1E-06 53.8 7.1 71 130-207 377-464 (483)
482 1ypw_A Transitional endoplasmi 92.2 0.025 8.4E-07 65.2 -0.2 31 14-44 505-535 (806)
483 1wxq_A GTP-binding protein; st 91.9 0.07 2.4E-06 56.1 2.9 41 107-156 181-221 (397)
484 3r7w_A Gtpase1, GTP-binding pr 91.9 0.087 3E-06 53.2 3.5 24 20-43 3-26 (307)
485 3n70_A Transport activator; si 91.9 0.078 2.7E-06 47.1 2.8 42 150-193 76-117 (145)
486 3gmt_A Adenylate kinase; ssgci 91.8 0.086 2.9E-06 51.1 3.2 23 21-43 9-31 (230)
487 2chg_A Replication factor C sm 91.8 0.087 3E-06 49.1 3.1 41 150-192 102-142 (226)
488 3th5_A RAS-related C3 botulinu 91.0 0.032 1.1E-06 52.2 0.0 21 22-42 32-52 (204)
489 2hjg_A GTP-binding protein ENG 91.6 0.073 2.5E-06 56.6 2.7 22 22-43 5-26 (436)
490 3syl_A Protein CBBX; photosynt 91.6 0.094 3.2E-06 52.4 3.3 27 18-44 65-91 (309)
491 4hlc_A DTMP kinase, thymidylat 91.5 0.12 4E-06 49.2 3.7 25 20-44 2-26 (205)
492 3p32_A Probable GTPase RV1496/ 91.5 0.11 3.8E-06 53.6 3.8 26 19-44 78-103 (355)
493 3l0i_B RAS-related protein RAB 91.4 0.022 7.5E-07 53.2 -1.5 23 22-44 35-57 (199)
494 1f5n_A Interferon-induced guan 91.2 0.086 2.9E-06 58.3 2.8 25 20-44 38-62 (592)
495 3gj0_A GTP-binding nuclear pro 91.2 0.06 2.1E-06 51.0 1.3 21 22-42 17-38 (221)
496 3geh_A MNME, tRNA modification 91.2 0.075 2.6E-06 57.1 2.2 25 19-43 223-247 (462)
497 1d2n_A N-ethylmaleimide-sensit 91.1 0.12 4E-06 50.9 3.4 26 18-43 62-87 (272)
498 3ec1_A YQEH GTPase; atnos1, at 91.0 0.09 3.1E-06 54.7 2.6 25 19-43 161-185 (369)
499 1lnz_A SPO0B-associated GTP-bi 90.9 0.11 3.7E-06 53.5 3.1 32 12-43 150-181 (342)
500 2qpt_A EH domain-containing pr 90.9 0.1 3.4E-06 57.4 2.9 24 21-44 66-89 (550)
No 1
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=1.4e-48 Score=408.58 Aligned_cols=205 Identities=25% Similarity=0.422 Sum_probs=185.0
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-------cccccEEEEccCCCCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-------SLKSKIGFVTQDDVLF 78 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-------~~~~~i~yv~Q~~~~~ 78 (583)
.+.+|+||||+|++||+++|+||||||||||+|+|+|... +++|+|.++|+++.. ..|+.||||+|++.++
T Consensus 40 ~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~--p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~ 117 (366)
T 3tui_C 40 TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLL 117 (366)
T ss_dssp EEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCC
T ss_pred CeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCC--CCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccC
Confidence 3579999999999999999999999999999999999653 679999999998752 2357899999999999
Q ss_pred CCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeC
Q 007952 79 PHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 158 (583)
Q Consensus 79 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDE 158 (583)
+.+||+||+.++...+ ..++++.+++++++++.+||.+..++ ++.+|||||||||+|||||+.+|++|+|||
T Consensus 118 ~~~TV~env~~~~~~~---~~~~~~~~~~v~~lL~~vgL~~~~~~-----~~~~LSGGqkQRVaIArAL~~~P~lLLlDE 189 (366)
T 3tui_C 118 SSRTVFGNVALPLELD---NTPKDEVKRRVTELLSLVGLGDKHDS-----YPSNLSGGQKQRVAIARALASNPKVLLCDQ 189 (366)
T ss_dssp TTSCHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHTCGGGTTC-----CTTTSCHHHHHHHHHHHHTTTCCSEEEEES
T ss_pred CCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 9999999999987654 34677788899999999999887665 467999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 159 PTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 159 PtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
||+|||+.++..+++.|++++++ |+|||++||++. .+.++||+|++|++|++++.|+++++.
T Consensus 190 PTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~-~~~~~aDrv~vl~~G~iv~~g~~~ev~ 252 (366)
T 3tui_C 190 ATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVISNGELIEQDTVSEVF 252 (366)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEEEETTEEEECCBHHHHH
T ss_pred CCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999764 999999999964 577899999999999999999999875
No 2
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=2.4e-48 Score=386.69 Aligned_cols=205 Identities=29% Similarity=0.455 Sum_probs=178.5
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCcc--------ccccEEEEccCCCCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS--------LKSKIGFVTQDDVLF 78 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~--------~~~~i~yv~Q~~~~~ 78 (583)
+.+|+|+|+++++||+++|+||||||||||+|+|+|... +++|+|.++|+++... .++.+|||+|++.++
T Consensus 18 ~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~ 95 (235)
T 3tif_A 18 IYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK--PTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLI 95 (235)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCC
T ss_pred eeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccC
Confidence 569999999999999999999999999999999999653 6799999999887421 134699999999999
Q ss_pred CCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccc-cccccCccCcccChHHHHHHHHHHHHHhCCCEEEEe
Q 007952 79 PHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ-DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLD 157 (583)
Q Consensus 79 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLD 157 (583)
+.+||+||+.++...+.....+.++..+++.++++.+||.+.. +. ++.+|||||||||+|||||+.+|++|+||
T Consensus 96 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~LSgGq~QRv~iAral~~~p~llllD 170 (235)
T 3tif_A 96 PLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANH-----KPNQLSGGQQQRVAIARALANNPPIILAD 170 (235)
T ss_dssp TTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTC-----CGGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred CCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhC-----ChhhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 9999999999986644222345667778899999999998643 43 46799999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhH
Q 007952 158 EPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 220 (583)
Q Consensus 158 EPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 220 (583)
|||+|||+.++.++++.|++++++ |+|||++||++. +.++||++++|++|+++..+++++.
T Consensus 171 EPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~--~~~~~d~i~~l~~G~i~~~~~~~~~ 232 (235)
T 3tif_A 171 QPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERIIYLKDGEVEREEKLRGF 232 (235)
T ss_dssp STTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH--HHTTSSEEEEEETTEEEEEEECC--
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH--HHHhCCEEEEEECCEEEEEcChhhh
Confidence 999999999999999999999765 999999999974 4589999999999999999988764
No 3
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=3.8e-48 Score=407.84 Aligned_cols=208 Identities=28% Similarity=0.485 Sum_probs=188.0
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc--cccccEEEEccCCCCCCCC
Q 007952 4 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 4 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~--~~~~~i~yv~Q~~~~~~~l 81 (583)
.+++.+|+|+|+++++||+++|+||||||||||||+|+|... +++|+|.++|+++.. ..++.+|||+|+..++|.+
T Consensus 13 yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~l 90 (381)
T 3rlf_A 13 WGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHL 90 (381)
T ss_dssp ETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTS
T ss_pred ECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCC--CCCeEEEECCEECCCCCHHHCCEEEEecCCcCCCCC
Confidence 456789999999999999999999999999999999999763 679999999998753 3457799999999999999
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 161 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPts 161 (583)
||+||+.|+...+ ..++++.+++++++++.+||++..++ ++.+|||||||||+|||||+.+|++|+|||||+
T Consensus 91 tV~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r-----~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts 162 (381)
T 3rlf_A 91 SVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLDR-----KPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLS 162 (381)
T ss_dssp CHHHHHTHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTC-----CGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTT
T ss_pred CHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcC-----ChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCc
Confidence 9999999987654 35677788899999999999887765 467999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 162 GLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 162 gLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
|||+..+.++.+.|+++.++ |+|+|++|||+. ++.++||+|++|++|+++..|+++++.+
T Consensus 163 ~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~~aDri~vl~~G~i~~~g~~~~l~~ 223 (381)
T 3rlf_A 163 NLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDAGRVAQVGKPLELYH 223 (381)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH-HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEEeCHHHHHh
Confidence 99999999999999999765 999999999964 5889999999999999999999998753
No 4
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=3.8e-48 Score=393.24 Aligned_cols=206 Identities=29% Similarity=0.509 Sum_probs=181.7
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCC--c----cccccEEEEccCC-CCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS--K----SLKSKIGFVTQDD-VLF 78 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~--~----~~~~~i~yv~Q~~-~~~ 78 (583)
.+.+|+|+|+++++||+++|+||||||||||+|+|+|... +++|+|.++|+++. + ..++.+|||+|++ ..+
T Consensus 20 ~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~--p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~ 97 (275)
T 3gfo_A 20 GTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILK--PSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQL 97 (275)
T ss_dssp SCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTC
T ss_pred CCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCeEEEECCEECCcccccHHHHhCcEEEEEcCccccc
Confidence 3459999999999999999999999999999999999653 67999999999873 1 2467899999986 334
Q ss_pred CCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeC
Q 007952 79 PHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 158 (583)
Q Consensus 79 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDE 158 (583)
..+||+||+.|+...+ ..+.++..++++++++.+||++..+. ++.+|||||||||+||+||+.+|++|+|||
T Consensus 98 ~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~-----~~~~LSgGqkQRv~iAraL~~~P~lLlLDE 169 (275)
T 3gfo_A 98 FSASVYQDVSFGAVNM---KLPEDEIRKRVDNALKRTGIEHLKDK-----PTHCLSFGQKKRVAIAGVLVMEPKVLILDE 169 (275)
T ss_dssp CSSBHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTS-----BGGGSCHHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred ccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcC-----CcccCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 4789999999987543 34677778889999999999887765 467999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHH-HCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 159 PTSGLDSTTALRIVQMLQDIA-EAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 159 PtsgLD~~~~~~i~~~l~~l~-~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
||+|||+.++..+++.|++++ ++|+|||++||++.. +.++||+|++|++|++++.|+++++.+
T Consensus 170 Pts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~-~~~~~drv~~l~~G~i~~~g~~~~~~~ 233 (275)
T 3gfo_A 170 PTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDI-VPLYCDNVFVMKEGRVILQGNPKEVFA 233 (275)
T ss_dssp TTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSS-GGGGCSEEEEEETTEEEEEECHHHHTH
T ss_pred ccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHH-HHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 999999999999999999997 569999999999764 778999999999999999999998754
No 5
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=6.6e-48 Score=389.25 Aligned_cols=206 Identities=28% Similarity=0.510 Sum_probs=181.8
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCC--c----cccccEEEEccCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS--K----SLKSKIGFVTQDDVLF 78 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~--~----~~~~~i~yv~Q~~~~~ 78 (583)
+++++|+|+|+++++||+++|+||||||||||+|+|+|... +++|+|.++|+++. . ..++.+|||+|++.++
T Consensus 35 ~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~ 112 (263)
T 2olj_A 35 GSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED--FDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLF 112 (263)
T ss_dssp TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCC
T ss_pred CCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCC--CCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCC
Confidence 45679999999999999999999999999999999999753 67999999998873 1 2356799999999999
Q ss_pred CCCCHHHHHHHHH-HcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEe
Q 007952 79 PHLTVKETLTYAA-LLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLD 157 (583)
Q Consensus 79 ~~lTv~e~l~~~~-~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLD 157 (583)
+.+||+||+.++. ..+ ..+.++.+++++++++.+||++..++ .+.+|||||||||+||+||+.+|++|+||
T Consensus 113 ~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~-----~~~~LSgGqkQRv~lAraL~~~p~lllLD 184 (263)
T 2olj_A 113 PHMTVLNNITLAPMKVR---KWPREKAEAKAMELLDKVGLKDKAHA-----YPDSLSGGQAQRVAIARALAMEPKIMLFD 184 (263)
T ss_dssp TTSCHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTS-----CGGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred CCCCHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcC-----ChhhCCHHHHHHHHHHHHHHCCCCEEEEe
Confidence 9999999999864 322 23455566789999999999877665 46799999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 158 EPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 158 EPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|||+|||+.++..+++.|++++++|+|||++||++. ++.++||++++|++|++++.|+++++.
T Consensus 185 EPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~ 247 (263)
T 2olj_A 185 EPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMG-FAREVGDRVLFMDGGYIIEEGKPEDLF 247 (263)
T ss_dssp STTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999878999999999964 577899999999999999999998875
No 6
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=2.4e-48 Score=406.71 Aligned_cols=208 Identities=27% Similarity=0.469 Sum_probs=184.0
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccC----Cc--cccccEEEEccCCCC
Q 007952 4 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY----SK--SLKSKIGFVTQDDVL 77 (583)
Q Consensus 4 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~----~~--~~~~~i~yv~Q~~~~ 77 (583)
.+++.+|+|+|+++++||+++|+||||||||||||+|+|... +++|+|.++|+++ .. ..++.+|||+|+..+
T Consensus 14 y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l 91 (359)
T 3fvq_A 14 FQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQ--PDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVL 91 (359)
T ss_dssp ETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC--CSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCC
T ss_pred ECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCC--CCCcEEEECCEECcccccccchhhCCEEEEeCCCcC
Confidence 456789999999999999999999999999999999999653 6799999999886 21 245779999999999
Q ss_pred CCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEe
Q 007952 78 FPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLD 157 (583)
Q Consensus 78 ~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLD 157 (583)
||.+||+||+.|+...+ ..++++.+++++++++.+||++..++ ++.+|||||||||+|||||+.+|++|+||
T Consensus 92 ~p~ltV~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r-----~~~~LSGGq~QRValArAL~~~P~lLLLD 163 (359)
T 3fvq_A 92 FPHLTVYRNIAYGLGNG---KGRTAQERQRIEAMLELTGISELAGR-----YPHELSGGQQQRAALARALAPDPELILLD 163 (359)
T ss_dssp CTTSCHHHHHHTTSTTS---SCCSHHHHHHHHHHHHHHTCGGGTTS-----CGGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred CCCCCHHHHHHHHHHHc---CCChHHHHHHHHHHHHHcCCchHhcC-----ChhhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 99999999999975432 23456677889999999999987775 46799999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHH-HCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 158 EPTSGLDSTTALRIVQMLQDIA-EAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 158 EPtsgLD~~~~~~i~~~l~~l~-~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
|||+|||+..+.++.+.|+++. +.|+|+|++|||.. ++.++||+|++|++|+++..|+++++..
T Consensus 164 EPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~-ea~~~aDri~vl~~G~i~~~g~~~el~~ 228 (359)
T 3fvq_A 164 EPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDRE-EALQYADRIAVMKQGRILQTASPHELYR 228 (359)
T ss_dssp STTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHHCCEEEEEECCEEEEEeCHHHHHh
Confidence 9999999999999999888875 46999999999964 5788999999999999999999998753
No 7
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=5.7e-48 Score=390.08 Aligned_cols=206 Identities=28% Similarity=0.484 Sum_probs=181.9
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-----------------ccccc
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-----------------SLKSK 67 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-----------------~~~~~ 67 (583)
+++++|+|+|+++++||+++|+||||||||||+|+|+|... +++|+|.++|+++.. ..++.
T Consensus 17 ~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (262)
T 1b0u_A 17 GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTR 94 (262)
T ss_dssp TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHH
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEccccccccccccccChhhHHHHhcc
Confidence 45679999999999999999999999999999999999753 679999999988751 23567
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHH-HcCCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCccCcccChHHHHHHHHHH
Q 007952 68 IGFVTQDDVLFPHLTVKETLTYAA-LLRLPNTLTKQQKEKRAIDVINELGLERC-QDTMIGGSFVRGVSGGERKRVCIGN 145 (583)
Q Consensus 68 i~yv~Q~~~~~~~lTv~e~l~~~~-~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~ig~~~~~~LSgGerqRv~ia~ 145 (583)
+|||+|++.+++.+||+||+.++. ..+ ..+.++.+++++++++.+||++. .++ .+.+|||||||||+|||
T Consensus 95 i~~v~Q~~~l~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~~LSgGq~qRv~lAr 166 (262)
T 1b0u_A 95 LTMVFQHFNLWSHMTVLENVMEAPIQVL---GLSKHDARERALKYLAKVGIDERAQGK-----YPVHLSGGQQQRVSIAR 166 (262)
T ss_dssp EEEECSSCCCCTTSCHHHHHHHHHHHTT---CCCHHHHHHHHHHHHHHTTCCHHHHTS-----CGGGSCHHHHHHHHHHH
T ss_pred eEEEecCcccCCCCcHHHHHHhhHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhcC-----CcccCCHHHHHHHHHHH
Confidence 999999999999999999999864 322 23455566789999999999887 665 46799999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 146 EIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 146 ~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||++. ++.++||++++|++|++++.|+++++.
T Consensus 167 aL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~ 241 (262)
T 1b0u_A 167 ALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHVIFLHQGKIEEEGDPEQVF 241 (262)
T ss_dssp HHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999888999999999964 577899999999999999999998874
No 8
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=2.2e-47 Score=399.56 Aligned_cols=207 Identities=25% Similarity=0.491 Sum_probs=185.6
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc--cccccEEEEccCCCCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~--~~~~~i~yv~Q~~~~~~~lT 82 (583)
+++++|+|+|+++++||+++|+||||||||||||+|+|... +++|+|.++|+++.. ..++.+|||+|+..++|.+|
T Consensus 26 g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~lt 103 (355)
T 1z47_A 26 GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLER--PTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMT 103 (355)
T ss_dssp TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSC
T ss_pred CCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC--CCccEEEECCEECCcCChhhCcEEEEecCcccCCCCC
Confidence 55679999999999999999999999999999999999753 679999999988753 34678999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCC
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 162 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsg 162 (583)
|+||+.|+...+ ..++++.+++++++++.+||++..++ ++.+|||||||||+|||||+.+|++|+|||||+|
T Consensus 104 v~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r-----~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~ 175 (355)
T 1z47_A 104 VYDNVSFGLREK---RVPKDEMDARVRELLRFMRLESYANR-----FPHELSGGQQQRVALARALAPRPQVLLFDEPFAA 175 (355)
T ss_dssp HHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTS-----CGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCC
T ss_pred HHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcC-----CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 999999987653 24566677889999999999887765 4679999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 163 LDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 163 LD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
||+.++.++.+.|++++++ |+|+|++|||+. ++..+||++++|++|+++..|+++++.+
T Consensus 176 LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~G~i~~~g~~~~l~~ 235 (355)
T 1z47_A 176 IDTQIRRELRTFVRQVHDEMGVTSVFVTHDQE-EALEVADRVLVLHEGNVEQFGTPEEVYE 235 (355)
T ss_dssp SSHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999765 999999999964 5788999999999999999999998753
No 9
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=2.3e-47 Score=376.97 Aligned_cols=200 Identities=31% Similarity=0.450 Sum_probs=176.7
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCcc-------cc-ccEEEEccCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS-------LK-SKIGFVTQDDV 76 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~-------~~-~~i~yv~Q~~~ 76 (583)
+++++|+|+|+++++||+++|+||||||||||+|+|+|... +++|+|.++|+++... .+ +.++||+|++.
T Consensus 15 ~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~ 92 (224)
T 2pcj_A 15 RGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA--PTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHY 92 (224)
T ss_dssp TTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSC--CSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCC
T ss_pred CCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcc
Confidence 45679999999999999999999999999999999999653 6799999999887431 22 57999999999
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEE
Q 007952 77 LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFL 156 (583)
Q Consensus 77 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illL 156 (583)
+++.+||+||+.++...+ ..+.++.+++++++++.+||.+..++. +.+|||||||||+||+||+.+|++|+|
T Consensus 93 l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGq~qrv~laral~~~p~lllL 164 (224)
T 2pcj_A 93 LIPELTALENVIVPMLKM---GKPKKEAKERGEYLLSELGLGDKLSRK-----PYELSGGEQQRVAIARALANEPILLFA 164 (224)
T ss_dssp CCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTCC-----GGGSCHHHHHHHHHHHHTTTCCSEEEE
T ss_pred cCCCCCHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 999999999999876543 234455667899999999998877654 579999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcC
Q 007952 157 DEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 216 (583)
Q Consensus 157 DEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 216 (583)
||||+|||+.++..+++.|++++++|+|||++|||+. .+ +.||++++|++|++++.|+
T Consensus 165 DEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~-~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 165 DEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERE-LA-ELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp ESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HH-TTSSEEEEEETTEEEEEEE
T ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HH-HhCCEEEEEECCEEEEEee
Confidence 9999999999999999999999877999999999964 34 8899999999999999886
No 10
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=2.2e-47 Score=384.09 Aligned_cols=207 Identities=25% Similarity=0.414 Sum_probs=182.9
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc---cccccEEEEccCCCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---SLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~---~~~~~i~yv~Q~~~~~~~l 81 (583)
+++.+|+|+|+++++||+++|+||||||||||+|+|+|... +.+|+|.++|+++.+ ..++.+|||+|++.+++.+
T Consensus 26 ~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~l 103 (256)
T 1vpl_A 26 GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK--PSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNM 103 (256)
T ss_dssp TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTS
T ss_pred CCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCC
Confidence 45679999999999999999999999999999999999753 679999999988753 2457799999999999999
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 161 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPts 161 (583)
||+||+.+....+ ..+.++.+++++++++.+||++..++. +.+|||||||||+||+||+.+|++|+|||||+
T Consensus 104 tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LSgGq~qRv~lAraL~~~p~lllLDEPts 175 (256)
T 1vpl_A 104 QGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKIKDR-----VSTYSKGMVRKLLIARALMVNPRLAILDEPTS 175 (256)
T ss_dssp BHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHCCGGGGGSB-----GGGCCHHHHHHHHHHHHHTTCCSEEEEESTTT
T ss_pred cHHHHHHHHHHHc---CCChHHHHHHHHHHHHHCCCchHhcCC-----hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 9999999875432 123445567789999999998877654 57999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 162 GLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 162 gLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
|||+.++..+++.|++++++|+|||++||++. ++.++||++++|++|++++.|+++++.+
T Consensus 176 ~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 176 GLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIALIHNGTIVETGTVEELKE 235 (256)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence 99999999999999999878999999999964 4677899999999999999999988754
No 11
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=1.2e-47 Score=386.80 Aligned_cols=207 Identities=26% Similarity=0.410 Sum_probs=179.5
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-----cccccEEEEccCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-----SLKSKIGFVTQDDVLFP 79 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-----~~~~~i~yv~Q~~~~~~ 79 (583)
+++++|+|+|+++++||+++|+||||||||||+|+|+|... +++|+|.++|+++.. ..++.+|||+|++.+++
T Consensus 18 ~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~ 95 (257)
T 1g6h_A 18 GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK--ADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLK 95 (257)
T ss_dssp TTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGG
T ss_pred CCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCCCCHHHHHhCCEEEEccCCccCC
Confidence 45679999999999999999999999999999999999763 679999999988743 13457999999999999
Q ss_pred CCCHHHHHHHHHHc-CCCC---------CCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHh
Q 007952 80 HLTVKETLTYAALL-RLPN---------TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIII 149 (583)
Q Consensus 80 ~lTv~e~l~~~~~~-~~~~---------~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~ 149 (583)
.+||+||+.++... +... ..+.++.+++++++++.+||++..++. +.+|||||||||+||+||+.
T Consensus 96 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGqkQrv~iAraL~~ 170 (257)
T 1g6h_A 96 EMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRK-----AGELSGGQMKLVEIGRALMT 170 (257)
T ss_dssp GSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSB-----GGGSCHHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCC-----chhCCHHHHHHHHHHHHHHc
Confidence 99999999986432 1110 012344567789999999998777654 57999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhh
Q 007952 150 NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 219 (583)
Q Consensus 150 ~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 219 (583)
+|++|+|||||+|||+.++..+++.|++++++|+|||++||++.. +.++||++++|++|++++.|++++
T Consensus 171 ~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~-~~~~~d~v~~l~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 171 NPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDI-VLNYIDHLYVMFNGQIIAEGRGEE 239 (257)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCST-TGGGCSEEEEEETTEEEEEEESHH
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH-HHHhCCEEEEEECCEEEEEeCHHH
Confidence 999999999999999999999999999998889999999999764 678999999999999999999988
No 12
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=3.8e-47 Score=399.09 Aligned_cols=208 Identities=28% Similarity=0.517 Sum_probs=185.6
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc--cccccEEEEccCCCCCCCC
Q 007952 4 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 4 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~--~~~~~i~yv~Q~~~~~~~l 81 (583)
.+++.+|+|+|+++++||+++|+||||||||||||+|+|... +++|+|.++|+++.. ..++.+|||+|+..++|++
T Consensus 13 y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~l 90 (362)
T 2it1_A 13 FGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK--PTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHM 90 (362)
T ss_dssp SSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTS
T ss_pred ECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC--CCceEEEECCEECCcCCHhHCcEEEEecCcccCCCC
Confidence 345679999999999999999999999999999999999753 679999999998753 2357799999999999999
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 161 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPts 161 (583)
||+||+.|+...+ ..++++.+++++++++.+||++..++ ++.+|||||||||+|||||+.+|++|+|||||+
T Consensus 91 tv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r-----~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s 162 (362)
T 2it1_A 91 TVYKNIAFPLELR---KAPREEIDKKVREVAKMLHIDKLLNR-----YPWQLSGGQQQRVAIARALVKEPEVLLLDEPLS 162 (362)
T ss_dssp CHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTC-----CGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGG
T ss_pred CHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhhC-----ChhhCCHHHHHHHHHHHHHHcCCCEEEEECccc
Confidence 9999999987543 23566677889999999999987765 467999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 162 GLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 162 gLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
|||+.++.++.+.|++++++ |+|+|++|||+. ++..+||++++|++|+++..|+++++.+
T Consensus 163 ~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~G~i~~~g~~~~~~~ 223 (362)
T 2it1_A 163 NLDALLRLEVRAELKRLQKELGITTVYVTHDQA-EALAMADRIAVIREGEILQVGTPDEVYY 223 (362)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999765 999999999964 5778999999999999999999998753
No 13
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=7.1e-47 Score=399.00 Aligned_cols=207 Identities=29% Similarity=0.501 Sum_probs=184.8
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc--------cccccEEEEccCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--------SLKSKIGFVTQDDV 76 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~--------~~~~~i~yv~Q~~~ 76 (583)
+++.+|+|+|+++++||+++|+||||||||||||+|+|... +++|+|.++|+++.. ..++.+|||+|+..
T Consensus 14 ~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~ 91 (372)
T 1g29_1 14 GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE--PSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYA 91 (372)
T ss_dssp TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCC
T ss_pred CCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCC--CCccEEEECCEECccccccccCCHhHCCEEEEeCCCc
Confidence 45679999999999999999999999999999999999753 679999999987632 23567999999999
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEE
Q 007952 77 LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFL 156 (583)
Q Consensus 77 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illL 156 (583)
++|++||+||+.|+...+ ..++++.+++++++++.+||++..+. ++.+|||||||||+|||||+.+|++|+|
T Consensus 92 l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r-----~~~~LSGGq~QRvalArAL~~~P~lLLL 163 (372)
T 1g29_1 92 LYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNR-----KPRELSGGQRQRVALGRAIVRKPQVFLM 163 (372)
T ss_dssp CCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHTCGGGTTC-----CGGGSCHHHHHHHHHHHHHHTCCSEEEE
T ss_pred cCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcC-----CcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999987653 24566677889999999999887765 4679999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 157 DEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 157 DEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
||||+|||+.++.++.+.|+++.++ |+|+|++|||+. ++..+||++++|++|+++..|+++++.+
T Consensus 164 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~G~i~~~g~~~~l~~ 229 (372)
T 1g29_1 164 DEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMNRGVLQQVGSPDEVYD 229 (372)
T ss_dssp ECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEeCCEEEEeCCHHHHHh
Confidence 9999999999999999999999765 999999999964 5788999999999999999999998753
No 14
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=3e-47 Score=399.46 Aligned_cols=207 Identities=28% Similarity=0.517 Sum_probs=183.4
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc--cccccEEEEccCCCCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~--~~~~~i~yv~Q~~~~~~~lT 82 (583)
+++.+|+|+|+++++||+++|+||||||||||||+|+|... +++|+|.++|+++.. ..++.+|||+|+..++|++|
T Consensus 14 ~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~lt 91 (359)
T 2yyz_A 14 GKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK--PTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMT 91 (359)
T ss_dssp TTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSC
T ss_pred CCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCC--CCccEEEECCEECCCCChhhCcEEEEecCcccCCCCC
Confidence 45679999999999999999999999999999999999753 679999999998753 23577999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCC
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 162 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsg 162 (583)
|+||+.|+...+ ..++++.+++++++++.+||++..++ ++.+|||||||||+|||||+.+|++|+|||||+|
T Consensus 92 v~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r-----~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~ 163 (359)
T 2yyz_A 92 VFENIAFPLRAR---RISKDEVEKRVVEIARKLLIDNLLDR-----KPTQLSGGQQQRVALARALVKQPKVLLFDEPLSN 163 (359)
T ss_dssp HHHHHHGGGSSS---CSHHHHTTHHHHHHHHHTTCGGGTTS-----CGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTT
T ss_pred HHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcC-----ChhhCCHHHHHHHHHHHHHHcCCCEEEEECCccc
Confidence 999999875432 23445556789999999999887765 4679999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 163 LDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 163 LD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
||+.++.++.+.|+++.++ |+|+|++|||+. ++..+||++++|++|+++..|+++++.+
T Consensus 164 LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~G~i~~~g~~~~l~~ 223 (359)
T 2yyz_A 164 LDANLRMIMRAEIKHLQQELGITSVYVTHDQA-EAMTMASRIAVFNQGKLVQYGTPDEVYD 223 (359)
T ss_dssp SCHHHHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999765 999999999964 5778999999999999999999998753
No 15
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=3.6e-47 Score=398.85 Aligned_cols=207 Identities=28% Similarity=0.514 Sum_probs=183.9
Q ss_pred cccc--eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-------cccccEEEEccCC
Q 007952 5 EEKD--ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-------SLKSKIGFVTQDD 75 (583)
Q Consensus 5 ~~~~--iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-------~~~~~i~yv~Q~~ 75 (583)
+++. +|+|+|+++++||+++|+||||||||||||+|+|... +++|+|.++|+++.. ..++.+|||+|+.
T Consensus 14 ~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~ 91 (353)
T 1oxx_K 14 KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV--PSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTW 91 (353)
T ss_dssp GGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC--CSEEEEEETTEEEEETTEESSCGGGSCEEEEETTS
T ss_pred CCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECcccccccCChhhCCEEEEeCCC
Confidence 4456 9999999999999999999999999999999999653 679999999987632 2467899999999
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 76 VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 76 ~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
.++|++||+||+.|+...+ ..++++.+++++++++.+||++..++ ++.+|||||||||+|||||+.+|++|+
T Consensus 92 ~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~~-----~~~~LSGGq~QRvalAraL~~~P~lLL 163 (353)
T 1oxx_K 92 ALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNH-----FPRELSGAQQQRVALARALVKDPSLLL 163 (353)
T ss_dssp CCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTS-----CGGGSCHHHHHHHHHHHHHTTCCSEEE
T ss_pred ccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcC-----ChhhCCHHHHHHHHHHHHHHhCCCEEE
Confidence 9999999999999875432 24566777889999999999887765 467999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
|||||+|||+.++.++.+.|++++++ |+|+|++|||+. ++.++||++++|++|+++..|+++++.+
T Consensus 164 LDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~G~i~~~g~~~~l~~ 230 (353)
T 1oxx_K 164 LDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVKGKLVQVGKPEDLYD 230 (353)
T ss_dssp EESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred EECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999764 999999999964 5788999999999999999999998753
No 16
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=3.7e-47 Score=384.68 Aligned_cols=205 Identities=25% Similarity=0.394 Sum_probs=179.9
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCC
Q 007952 4 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFP 79 (583)
Q Consensus 4 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~ 79 (583)
.+++++|+|+|+++++||+++|+||||||||||+|+|+|... +++|+|.++|+++.. ..++.++|++|++.+++
T Consensus 21 ~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~ 98 (266)
T 4g1u_C 21 VQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLS--PSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAF 98 (266)
T ss_dssp ETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSC--CSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCS
T ss_pred eCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEECCcCCHHHHhheEEEEecCCccCC
Confidence 356789999999999999999999999999999999999653 678999999998753 24567999999999888
Q ss_pred CCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHh------CCCE
Q 007952 80 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIII------NPSL 153 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~------~p~i 153 (583)
.+||+||+.++.... ...+.+++++++++.+||.+..++. +.+|||||||||+|||||+. +|++
T Consensus 99 ~~tv~e~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGq~QRv~iAraL~~~~~~~~~p~l 168 (266)
T 4g1u_C 99 PFSVSEVIQMGRAPY-----GGSQDRQALQQVMAQTDCLALAQRD-----YRVLSGGEQQRVQLARVLAQLWQPQPTPRW 168 (266)
T ss_dssp CCBHHHHHHGGGTTS-----CSTTHHHHHHHHHHHTTCSTTTTSB-----GGGCCHHHHHHHHHHHHHHHTCCSSCCCEE
T ss_pred CCCHHHHHHhhhhhc-----CcHHHHHHHHHHHHHcCChhHhcCC-----cccCCHHHHHHHHHHHHHhcccccCCCCCE
Confidence 899999999875432 1223456789999999998877654 57999999999999999999 9999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 154 LFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 154 llLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|+|||||+|||+.++.++++.|++++++ |+|||++|||+. ++.++||++++|++|++++.|+++++.
T Consensus 169 LllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~-~~~~~~d~v~vl~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 169 LFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLN-LAALYADRIMLLAQGKLVACGTPEEVL 236 (266)
T ss_dssp EEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHH-HHHHHCSEEEEEETTEEEEEECHHHHC
T ss_pred EEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHH-HHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 9999999999999999999999999865 579999999964 577899999999999999999998863
No 17
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=4.9e-47 Score=378.53 Aligned_cols=205 Identities=26% Similarity=0.425 Sum_probs=177.4
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCcc-----ccccEEEEccCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS-----LKSKIGFVTQDDVLFP 79 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~-----~~~~i~yv~Q~~~~~~ 79 (583)
+++++|+|+|+++++||+++|+||||||||||+|+|+|... +++|+|.++|+++.+. .++.+|||+|++.+++
T Consensus 17 ~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~ 94 (240)
T 1ji0_A 17 GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR--AQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFP 94 (240)
T ss_dssp TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCT
T ss_pred CCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCC
Confidence 45679999999999999999999999999999999999653 6799999999987431 2456999999999999
Q ss_pred CCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcC-CCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeC
Q 007952 80 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG-LERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 158 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDE 158 (583)
.+||+||+.++.... .+.++.+++++++++.++ |.+..++ .+.+|||||||||+|||||+.+|++|+|||
T Consensus 95 ~ltv~enl~~~~~~~----~~~~~~~~~~~~~l~~~~~l~~~~~~-----~~~~LSgGq~qrv~lAraL~~~p~lllLDE 165 (240)
T 1ji0_A 95 ELTVYENLMMGAYNR----KDKEGIKRDLEWIFSLFPRLKERLKQ-----LGGTLSGGEQQMLAIGRALMSRPKLLMMDE 165 (240)
T ss_dssp TSBHHHHHHGGGTTC----CCSSHHHHHHHHHHHHCHHHHTTTTS-----BSSSSCHHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred CCcHHHHHHHhhhcC----CCHHHHHHHHHHHHHHcccHhhHhcC-----ChhhCCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 999999999863211 122344567888999994 8766654 467999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 159 PTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 159 PtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
||+|||+.++..+++.|++++++|+|||++||++. ++.++||++++|++|++++.|+++++.
T Consensus 166 Pts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~ 227 (240)
T 1ji0_A 166 PSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHYGYVLETGQIVLEGKASELL 227 (240)
T ss_dssp TTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSEEEEEETTEEEEEEEHHHHH
T ss_pred CcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 99999999999999999999878999999999964 477899999999999999999988764
No 18
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=6.6e-47 Score=398.61 Aligned_cols=207 Identities=26% Similarity=0.478 Sum_probs=177.9
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc--cccccEEEEccCCCCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~--~~~~~i~yv~Q~~~~~~~lT 82 (583)
+++.+|+|+|+++++||+++|+||||||||||||+|+|... +++|+|.++|+++.. ..++.+|||+|+..+||++|
T Consensus 22 ~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~lt 99 (372)
T 1v43_A 22 GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE--PTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMT 99 (372)
T ss_dssp TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCGGGGTEEEEEC------CCC
T ss_pred CCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC--CCceEEEECCEECCCCChhhCcEEEEecCcccCCCCC
Confidence 45679999999999999999999999999999999999753 679999999998753 23577999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCC
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 162 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsg 162 (583)
|+||+.|+...+ ..++++.+++++++++.+||++..++ ++.+|||||||||+|||||+.+|++|+|||||+|
T Consensus 100 v~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r-----~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~ 171 (372)
T 1v43_A 100 VYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNR-----YPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSN 171 (372)
T ss_dssp HHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTS-----CTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTT
T ss_pred HHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhHhcC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCcc
Confidence 999999864322 24566677889999999999887765 4679999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 163 LDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 163 LD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
||+.++.++.+.|+++.++ |+|+|++|||+. ++..+||++++|++|+++..|+++++..
T Consensus 172 LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~G~i~~~g~~~~l~~ 231 (372)
T 1v43_A 172 LDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNRGQLLQIGSPTEVYL 231 (372)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999765 999999999964 5778999999999999999999998753
No 19
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=2e-46 Score=391.84 Aligned_cols=202 Identities=30% Similarity=0.511 Sum_probs=179.3
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc--cccccEEEEccCCCCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~--~~~~~i~yv~Q~~~~~~~lT 82 (583)
+++ +|+|+|+++++||+++|+||||||||||||+|+|... +++|+|.++|+++.. ..++.+|||+|+..++|++|
T Consensus 12 ~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~lt 88 (348)
T 3d31_A 12 KNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV--PDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMN 88 (348)
T ss_dssp SSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC--CSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSC
T ss_pred CCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCC--CCCcEEEECCEECCCCchhhCcEEEEecCcccCCCCC
Confidence 445 9999999999999999999999999999999999753 679999999998753 24567999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCC
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 162 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsg 162 (583)
|+||+.|+...+. .+++ ++++++++.+||++..++ ++.+|||||||||+|||||+.+|++|+|||||+|
T Consensus 89 v~enl~~~~~~~~---~~~~---~~v~~~l~~~~L~~~~~~-----~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~ 157 (348)
T 3d31_A 89 VKKNLEFGMRMKK---IKDP---KRVLDTARDLKIEHLLDR-----NPLTLSGGEQQRVALARALVTNPKILLLDEPLSA 157 (348)
T ss_dssp HHHHHHHHHHHHC---CCCH---HHHHHHHHHTTCTTTTTS-----CGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTT
T ss_pred HHHHHHHHHHHcC---CCHH---HHHHHHHHHcCCchHhcC-----ChhhCCHHHHHHHHHHHHHHcCCCEEEEECcccc
Confidence 9999999865431 1112 678999999999987775 4679999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 163 LDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 163 LD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
||+.++.++.+.|++++++ |+|+|++|||+. ++.++||++++|++|+++..|+++++.
T Consensus 158 LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-~~~~~adri~vl~~G~i~~~g~~~~~~ 216 (348)
T 3d31_A 158 LDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVMDGKLIQVGKPEEIF 216 (348)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEESSSCEEEEECHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999764 999999999964 578899999999999999999999874
No 20
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=4.2e-46 Score=371.37 Aligned_cols=199 Identities=27% Similarity=0.460 Sum_probs=175.0
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc--cccccEEEEccCCCCCCCCCHHHH
Q 007952 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKSKIGFVTQDDVLFPHLTVKET 86 (583)
Q Consensus 9 iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~--~~~~~i~yv~Q~~~~~~~lTv~e~ 86 (583)
+|+|+|+++++ |+++|+||||||||||+|+|+|... +.+|+|.++|+++.. ..++.+|||+|++.+++.+||+||
T Consensus 14 ~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~en 90 (240)
T 2onk_A 14 FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVK--PDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRN 90 (240)
T ss_dssp EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHH
T ss_pred EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHH
Confidence 59999999999 9999999999999999999999753 679999999988743 345679999999999999999999
Q ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHH
Q 007952 87 LTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDST 166 (583)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~ 166 (583)
+.++...+ .....+++++++++.+||.+..++. +.+||||||||++|||||+.+|++|+|||||+|||+.
T Consensus 91 l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~ 160 (240)
T 2onk_A 91 IAYGLRNV-----ERVERDRRVREMAEKLGIAHLLDRK-----PARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLK 160 (240)
T ss_dssp HHTTCTTS-----CHHHHHHHHHHHHHTTTCTTTTTCC-----GGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHH
T ss_pred HHHHHHHc-----CCchHHHHHHHHHHHcCCHHHhcCC-----hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence 98853221 1222356789999999998876654 5799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 167 TALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 167 ~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
++..+++.|++++++ |+|||++||++. ++.++||++++|++|++++.|+++++.
T Consensus 161 ~~~~~~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 215 (240)
T 2onk_A 161 TKGVLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLNGRIVEKGKLKELF 215 (240)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999764 999999999964 477899999999999999999998875
No 21
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=4.5e-46 Score=377.08 Aligned_cols=204 Identities=26% Similarity=0.451 Sum_probs=177.2
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-cccccEEEEccCC-CCCCCCCHH
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-SLKSKIGFVTQDD-VLFPHLTVK 84 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-~~~~~i~yv~Q~~-~~~~~lTv~ 84 (583)
+.+|+|+|+++++||+++|+||||||||||+|+|+|... +.+|+|.++|+++.+ ..++.+|||+|++ ..++.+||+
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~--p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~ 97 (266)
T 2yz2_A 20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIE--PTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVF 97 (266)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHH
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHH
Confidence 579999999999999999999999999999999999653 679999999988753 3467799999995 566779999
Q ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCC--ccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCC
Q 007952 85 ETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE--RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 162 (583)
Q Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~--~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsg 162 (583)
||+.++.... .+.++.+++++++++.+||. +..++. +.+|||||||||+||++|+.+|++|+|||||+|
T Consensus 98 enl~~~~~~~----~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~ 168 (266)
T 2yz2_A 98 DEVAFAVKNF----YPDRDPVPLVKKAMEFVGLDFDSFKDRV-----PFFLSGGEKRRVAIASVIVHEPDILILDEPLVG 168 (266)
T ss_dssp HHHHHTTTTT----CTTSCSHHHHHHHHHHTTCCHHHHTTCC-----GGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTT
T ss_pred HHHHHHHHhc----CCHHHHHHHHHHHHHHcCcCCcccccCC-----hhhCCHHHHHHHHHHHHHHcCCCEEEEcCcccc
Confidence 9999864321 11222346688999999998 776654 579999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 163 LDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 163 LD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
||+.++..+++.|++++++|+|||++||++.. +.++||++++|++|++++.|+++++.+
T Consensus 169 LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~-~~~~~d~v~~l~~G~i~~~g~~~~~~~ 227 (266)
T 2yz2_A 169 LDREGKTDLLRIVEKWKTLGKTVILISHDIET-VINHVDRVVVLEKGKKVFDGTRMEFLE 227 (266)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCEEEEECSCCTT-TGGGCSEEEEEETTEEEEEEEHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999998779999999999764 667899999999999999999988764
No 22
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=4.4e-46 Score=373.84 Aligned_cols=209 Identities=24% Similarity=0.297 Sum_probs=171.0
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCcc-----ccccEEEEccCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS-----LKSKIGFVTQDDVLFP 79 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~-----~~~~i~yv~Q~~~~~~ 79 (583)
+++.+|+|+|+++++||+++|+||||||||||+|+|+|....++.+|+|.++|+++... .++.++||+|++.+++
T Consensus 14 ~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 93 (250)
T 2d2e_A 14 DGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQYPVEVP 93 (250)
T ss_dssp TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CC
T ss_pred CCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEeccCCcccc
Confidence 45679999999999999999999999999999999999621236799999999987431 2345899999999999
Q ss_pred CCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCC-CccccccccCccCcc-cChHHHHHHHHHHHHHhCCCEEEEe
Q 007952 80 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL-ERCQDTMIGGSFVRG-VSGGERKRVCIGNEIIINPSLLFLD 157 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-~~~~~~~ig~~~~~~-LSgGerqRv~ia~~L~~~p~illLD 157 (583)
.+||+||+.+............++..++++++++.+|| .+..++. +.+ ||||||||++||+||+.+|++|+||
T Consensus 94 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~~~LSgGqkQrv~iAraL~~~p~lllLD 168 (250)
T 2d2e_A 94 GVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRY-----LNEGFSGGEKKRNEILQLLVLEPTYAVLD 168 (250)
T ss_dssp SCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSB-----TTCC----HHHHHHHHHHHHHCCSEEEEE
T ss_pred CCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCC-----cccCCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 99999999986531111112334455778999999999 4666654 457 9999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhh-cCeEEEEcCCeEEEEcChhh
Q 007952 158 EPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHK-FDKLILLGKGSLLYFGKASE 219 (583)
Q Consensus 158 EPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~-~D~v~~L~~G~iv~~G~~~~ 219 (583)
|||+|||+.++..+++.|++++++|+|||++||++. .+... ||++++|++|++++.|+++.
T Consensus 169 EPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~~~~~d~v~~l~~G~i~~~g~~~~ 230 (250)
T 2d2e_A 169 ETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQR-ILNYIQPDKVHVMMDGRVVATGGPEL 230 (250)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSG-GGGTSCCSEEEEEETTEEEEEESHHH
T ss_pred CCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhcCCEEEEEECCEEEEEeCHHH
Confidence 999999999999999999999777999999999975 45566 59999999999999999873
No 23
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=4.6e-46 Score=379.05 Aligned_cols=208 Identities=24% Similarity=0.381 Sum_probs=174.5
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCC--c----cccccEEEEccCCCC-
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS--K----SLKSKIGFVTQDDVL- 77 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~--~----~~~~~i~yv~Q~~~~- 77 (583)
+++++|+|+|+++++||+++|+||||||||||+|+|+|... +++|+|.++|+++. . ..++.+|||+|++.+
T Consensus 32 ~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~ 109 (279)
T 2ihy_A 32 QGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP--ATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEK 109 (279)
T ss_dssp TTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTBCCC---CCHHHHHTTEEEECHHHHTT
T ss_pred CCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCeEEEECCEEcccccCCHHHHcCcEEEEEcCcccc
Confidence 45679999999999999999999999999999999999763 67899999998875 2 245779999999754
Q ss_pred -CCCCCHHHHHHHHHHcCCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 78 -FPHLTVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 78 -~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
.+.+||+||+.++...... .....++..++++++++.+||++..++. +.+|||||||||+|||||+.+|++|+
T Consensus 110 ~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGqkqRv~lAraL~~~p~lLl 184 (279)
T 2ihy_A 110 FQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQY-----IGYLSTGEKQRVMIARALMGQPQVLI 184 (279)
T ss_dssp SCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSB-----GGGSCHHHHHHHHHHHHHHTCCSEEE
T ss_pred cCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCC-----hhhCCHHHHHHHHHHHHHhCCCCEEE
Confidence 3457999999875311000 0111234456789999999998777654 57999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEE--EEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTV--VTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 220 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~ti--i~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 220 (583)
|||||+|||+.++..+++.|++++++|+|| |++||++. ++.++||++++|++|++++.|+++++
T Consensus 185 LDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~ 250 (279)
T 2ihy_A 185 LDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIE-EITANFSKILLLKDGQSIQQGAVEDI 250 (279)
T ss_dssp EESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGG-GCCTTCCEEEEEETTEEEEEEEHHHH
T ss_pred EeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999998779999 99999975 46788999999999999999998875
No 24
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=5.4e-45 Score=369.28 Aligned_cols=218 Identities=28% Similarity=0.351 Sum_probs=179.9
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cc-cccEEEEccCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SL-KSKIGFVTQDDVLFP 79 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~-~~~i~yv~Q~~~~~~ 79 (583)
+++++|+|+|+++++||+++|+||||||||||+|+|+|....++.+|+|.++|+++.. .. ++.++||+|++.+++
T Consensus 31 ~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~ 110 (267)
T 2zu0_C 31 EDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIP 110 (267)
T ss_dssp TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCCT
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCccccc
Confidence 4568999999999999999999999999999999999964223578999999987642 11 345999999999999
Q ss_pred CCCHHHHHHHHHH-cC---CCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCc-ccChHHHHHHHHHHHHHhCCCE
Q 007952 80 HLTVKETLTYAAL-LR---LPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVR-GVSGGERKRVCIGNEIIINPSL 153 (583)
Q Consensus 80 ~lTv~e~l~~~~~-~~---~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~-~LSgGerqRv~ia~~L~~~p~i 153 (583)
.+||.|++.+... .+ .....+.++.+++++++++.+||. +..++ .+. +|||||||||+|||||+.+|++
T Consensus 111 ~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~~~LSgGq~QRv~iAraL~~~p~l 185 (267)
T 2zu0_C 111 GVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTR-----SVNVGFSGGEKKRNDILQMAVLEPEL 185 (267)
T ss_dssp TCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTS-----BTTTTCCHHHHHHHHHHHHHHHCCSE
T ss_pred cccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcC-----CcccCCCHHHHHHHHHHHHHHhCCCE
Confidence 9999999987542 11 111234455567899999999996 45554 344 5999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhh-cCeEEEEcCCeEEEEcChhhHHHHHHhcCC
Q 007952 154 LFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHK-FDKLILLGKGSLLYFGKASEAMAYFSSIGC 229 (583)
Q Consensus 154 llLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~-~D~v~~L~~G~iv~~G~~~~~~~~f~~~g~ 229 (583)
|+|||||+|||+.++..+++.|++++++|+|||++||++.. +... ||++++|++|++++.|+++++.. .+..|+
T Consensus 186 LlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~ 260 (267)
T 2zu0_C 186 CILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRI-LDYIKPDYVHVLYQGRIVKSGDFTLVKQ-LEEQGY 260 (267)
T ss_dssp EEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGG-GGTSCCSEEEEEETTEEEEEECTTHHHH-HHTTTC
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHH-HHhhcCCEEEEEECCEEEEEcCHHHHhh-hhhcch
Confidence 99999999999999999999999997779999999999753 5555 89999999999999999988653 344443
No 25
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=4.9e-45 Score=365.53 Aligned_cols=196 Identities=27% Similarity=0.407 Sum_probs=173.3
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCCCH
Q 007952 8 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLTV 83 (583)
Q Consensus 8 ~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~lTv 83 (583)
.+|+|+|+++++||+++|+||||||||||+|+|+|... +. |+|.++|+++.+ ..++.++||+|++.+++.+||
T Consensus 14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~--p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 90 (249)
T 2qi9_C 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS--GK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPV 90 (249)
T ss_dssp TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBH
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcH
Confidence 68999999999999999999999999999999999753 57 999999988642 245679999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCC-------EEEE
Q 007952 84 KETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPS-------LLFL 156 (583)
Q Consensus 84 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~-------illL 156 (583)
+||+.++. .+. .+ +++++++++.+||++..++ .+.+||||||||++||++|+.+|+ +|+|
T Consensus 91 ~e~l~~~~---~~~-~~----~~~~~~~l~~~~l~~~~~~-----~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllL 157 (249)
T 2qi9_C 91 WHYLTLHQ---HDK-TR----TELLNDVAGALALDDKLGR-----STNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLL 157 (249)
T ss_dssp HHHHHTTC---SST-TC----HHHHHHHHHHTTCGGGTTS-----BGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEE
T ss_pred HHHHHHhh---ccC-Cc----HHHHHHHHHHcCChhHhcC-----ChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEE
Confidence 99998752 111 11 4568899999999887665 357999999999999999999999 9999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhH
Q 007952 157 DEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 220 (583)
Q Consensus 157 DEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 220 (583)
||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||++++|++|++++.|+++++
T Consensus 158 DEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~ 220 (249)
T 2qi9_C 158 DEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLN-HTLRHAHRAWLLKGGKMLASGRREEV 220 (249)
T ss_dssp SSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEETTEEEEEEEHHHH
T ss_pred ECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999877999999999965 46689999999999999999998876
No 26
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=1.9e-44 Score=362.37 Aligned_cols=197 Identities=29% Similarity=0.426 Sum_probs=170.8
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHH
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 85 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e 85 (583)
++.+|+|+|+++++||+++|+||||||||||+|+|+|... +.+|+|. .++.+|||+|++.+++.+||+|
T Consensus 17 ~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~---------~~~~i~~v~q~~~~~~~~tv~e 85 (253)
T 2nq2_C 17 ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHR--PIQGKIE---------VYQSIGFVPQFFSSPFAYSVLD 85 (253)
T ss_dssp TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSC--CSEEEEE---------ECSCEEEECSCCCCSSCCBHHH
T ss_pred CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEE---------EeccEEEEcCCCccCCCCCHHH
Confidence 5689999999999999999999999999999999999753 6789998 2467999999999999999999
Q ss_pred HHHHHHHcCCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCC
Q 007952 86 TLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLD 164 (583)
Q Consensus 86 ~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD 164 (583)
|+.++...... .....++.+++++++++.+||.+..++. +.+|||||||||+||+||+.+|++|+|||||+|||
T Consensus 86 nl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD 160 (253)
T 2nq2_C 86 IVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKRE-----FTSLSGGQRQLILIARAIASECKLILLDEPTSALD 160 (253)
T ss_dssp HHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSB-----GGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSC
T ss_pred HHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCC-----hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCC
Confidence 99986432110 0011234456789999999998877654 57999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhH
Q 007952 165 STTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 220 (583)
Q Consensus 165 ~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 220 (583)
+.++..+++.|++++++ |+|||++|||+. ++.++||++++|++|+ ++.|+++++
T Consensus 161 ~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~G~-~~~g~~~~~ 215 (253)
T 2nq2_C 161 LANQDIVLSLLIDLAQSQNMTVVFTTHQPN-QVVAIANKTLLLNKQN-FKFGETRNI 215 (253)
T ss_dssp HHHHHHHHHHHHHHHHTSCCEEEEEESCHH-HHHHHCSEEEEEETTE-EEEEEHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeCCe-EecCCHHHH
Confidence 99999999999999877 999999999964 4678999999999999 999998876
No 27
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=6.1e-45 Score=364.78 Aligned_cols=201 Identities=30% Similarity=0.516 Sum_probs=170.0
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~l 81 (583)
++.+|+|+|+++++||+++|+||||||||||+|+|+|... +.+|+|.++|+++.+ ..++.+|||+|++.+++ .
T Consensus 21 ~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~ 97 (247)
T 2ff7_A 21 SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI--PENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLN-R 97 (247)
T ss_dssp SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTT-S
T ss_pred CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCcccc-c
Confidence 5679999999999999999999999999999999999753 679999999988753 24567999999998887 5
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccc------cCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMI------GGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~i------g~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
||+||+.++. + ..+ .++++++++.+++.+..+... -++.+.+|||||||||+|||||+.+|++|+
T Consensus 98 tv~enl~~~~----~-~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lll 168 (247)
T 2ff7_A 98 SIIDNISLAN----P-GMS----VEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILI 168 (247)
T ss_dssp BHHHHHTTTC----T-TCC----HHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEE
T ss_pred cHHHHHhccC----C-CCC----HHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999998742 1 112 234667788888865544321 123467999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
|||||+|||+.++..+++.|++++ +|+|||++||++.. + +.||++++|++|++++.|+++++.
T Consensus 169 LDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~~-~-~~~d~v~~l~~G~i~~~g~~~~l~ 231 (247)
T 2ff7_A 169 FDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLST-V-KNADRIIVMEKGKIVEQGKHKELL 231 (247)
T ss_dssp ECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGGG-G-TTSSEEEEEETTEEEEEECHHHHH
T ss_pred EeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHH-H-HhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999995 59999999999763 4 469999999999999999998874
No 28
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=9.5e-45 Score=373.11 Aligned_cols=202 Identities=30% Similarity=0.514 Sum_probs=169.5
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPH 80 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~ 80 (583)
+.+.+|+|+||+|++||++||+||||||||||+|+|+|... +.+|+|.+||+++.. .+++.+|||+|++.+|+
T Consensus 65 ~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~- 141 (306)
T 3nh6_A 65 DGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYD--ISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFN- 141 (306)
T ss_dssp TTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSC--CSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCS-
T ss_pred CCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCC--CCCcEEEECCEEcccCCHHHHhcceEEEecCCccCc-
Confidence 35679999999999999999999999999999999999653 679999999998753 35778999999999986
Q ss_pred CCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCccCcccChHHHHHHHHHHHHHhCCCE
Q 007952 81 LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-------CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSL 153 (583)
Q Consensus 81 lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~i 153 (583)
.||+||+.++.. .... +++++.++..++.+ -.++.+| +...+||||||||++|||||+.+|++
T Consensus 142 ~Tv~eNi~~~~~-----~~~~----~~~~~~~~~~~l~~~i~~lp~gl~t~~~-~~g~~LSGGqrQRvaiARAL~~~p~i 211 (306)
T 3nh6_A 142 DTIADNIRYGRV-----TAGN----DEVEAAAQAAGIHDAIMAFPEGYRTQVG-ERGLKLSGGEKQRVAIARTILKAPGI 211 (306)
T ss_dssp EEHHHHHHTTST-----TCCH----HHHHHHHHHHTCHHHHHHSTTGGGCEES-TTSBCCCHHHHHHHHHHHHHHHCCSE
T ss_pred ccHHHHHHhhcc-----cCCH----HHHHHHHHHhCcHHHHHhccchhhhHhc-CCcCCCCHHHHHHHHHHHHHHhCCCE
Confidence 599999987532 1122 23445555555543 2345554 45678999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 154 LFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 154 llLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
|+|||||+|||+.++..+++.|+++.+ ++|+|+++|+++. +. .||+|++|++|++++.|+++++.+
T Consensus 212 LlLDEPts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~~-~~-~aD~i~vl~~G~iv~~G~~~el~~ 277 (306)
T 3nh6_A 212 ILLDEATSALDTSNERAIQASLAKVCA-NRTTIVVAHRLST-VV-NADQILVIKDGCIVERGRHEALLS 277 (306)
T ss_dssp EEEECCSSCCCHHHHHHHHHHHHHHHT-TSEEEEECCSHHH-HH-TCSEEEEEETTEEEEEECHHHHHH
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHcC-CCEEEEEEcChHH-HH-cCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999864 7999999999754 54 499999999999999999999865
No 29
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=7.1e-45 Score=369.05 Aligned_cols=202 Identities=31% Similarity=0.497 Sum_probs=168.7
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~lT 82 (583)
+.+|+|+|+++++||+++|+||||||||||+|+|+|... +.+|+|.++|+++.. ..++.++||+|++.+++ .|
T Consensus 32 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~t 108 (271)
T 2ixe_A 32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ--PTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFG-RS 108 (271)
T ss_dssp SCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCS-SB
T ss_pred ceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCCEEEECCEEcccCCHHHHhccEEEEecCCcccc-cc
Confidence 679999999999999999999999999999999999753 678999999988742 24567999999998887 59
Q ss_pred HHHHHHHHHHcCCCCCCCHHH-----HHHHHHHHHHHc--CCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 83 VKETLTYAALLRLPNTLTKQQ-----KEKRAIDVINEL--GLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~-----~~~~v~~~l~~l--gL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
|+||+.++... ....++ ....++++++.+ |+.+..+. .+.+|||||||||+|||||+.+|++|+
T Consensus 109 v~enl~~~~~~----~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~-----~~~~LSgGq~QRv~lAraL~~~p~lll 179 (271)
T 2ixe_A 109 FRENIAYGLTR----TPTMEEITAVAMESGAHDFISGFPQGYDTEVGE-----TGNQLSGGQRQAVALARALIRKPRLLI 179 (271)
T ss_dssp HHHHHHTTCSS----CCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCG-----GGTTSCHHHHHHHHHHHHHTTCCSEEE
T ss_pred HHHHHhhhccc----CChHHHHHHHHHHHhHHHHHHhhhcchhhhhcC-----CcCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999875321 111111 122356677777 66655443 467999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
|||||+|||+.++..+++.|+++++ +|+|||++||++. .+ ..||++++|++|+++..|+++++.+
T Consensus 180 LDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~-~~-~~~d~v~~l~~G~i~~~g~~~~l~~ 245 (271)
T 2ixe_A 180 LDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLS-LA-ERAHHILFLKEGSVCEQGTHLQLME 245 (271)
T ss_dssp EESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHH-HH-TTCSEEEEEETTEEEEEECHHHHHH
T ss_pred EECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HH-HhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999864 4899999999975 34 4599999999999999999988754
No 30
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=7.9e-45 Score=363.29 Aligned_cols=204 Identities=31% Similarity=0.510 Sum_probs=173.1
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPH 80 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~ 80 (583)
+++.+|+|+|+++++||+++|+||||||||||+|+|+|... +.+|+|.++|+++.. ..++.++||+|++.+++
T Consensus 13 ~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~- 89 (243)
T 1mv5_A 13 DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ--PTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMA- 89 (243)
T ss_dssp SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC--CSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCC-
T ss_pred CCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCcccc-
Confidence 45689999999999999999999999999999999999653 578999999988742 35678999999998887
Q ss_pred CCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCcccccccc------CccCcccChHHHHHHHHHHHHHhCCCEE
Q 007952 81 LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIG------GSFVRGVSGGERKRVCIGNEIIINPSLL 154 (583)
Q Consensus 81 lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig------~~~~~~LSgGerqRv~ia~~L~~~p~il 154 (583)
.||+||+.++.. + ... +++++++++.+++.+..+.... ++.+.+||||||||++|||+|+.+|++|
T Consensus 90 ~tv~enl~~~~~---~-~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~ll 161 (243)
T 1mv5_A 90 GTIRENLTYGLE---G-DYT----DEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKIL 161 (243)
T ss_dssp EEHHHHTTSCTT---S-CSC----HHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEE
T ss_pred ccHHHHHhhhcc---C-CCC----HHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 599999987421 1 112 2457788999999876654321 2346799999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 155 FLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
+|||||+|||+.++..+++.|++++ +|+|||++||++. .+ +.||++++|++|++++.|+++++.+
T Consensus 162 lLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~~~~ 226 (243)
T 1mv5_A 162 MLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLS-TI-VDADKIYFIEKGQITGSGKHNELVA 226 (243)
T ss_dssp EEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHH-HH-HHCSEEEEEETTEECCCSCHHHHHH
T ss_pred EEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChH-HH-HhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999999997 6999999999975 34 5699999999999999999988753
No 31
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=3.5e-44 Score=351.17 Aligned_cols=188 Identities=23% Similarity=0.387 Sum_probs=161.9
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHHHH
Q 007952 8 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETL 87 (583)
Q Consensus 8 ~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~l 87 (583)
++|+|+|+++++||+++|+||||||||||||+|+|... +.+|+|.++|+++. ..++.++||+|++.+++.+||+||+
T Consensus 23 ~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~~~-~~~~~i~~v~q~~~~~~~~tv~enl 99 (214)
T 1sgw_A 23 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPIT-KVKGKIFFLPEEIIVPRKISVEDYL 99 (214)
T ss_dssp EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEGG-GGGGGEEEECSSCCCCTTSBHHHHH
T ss_pred eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEhh-hhcCcEEEEeCCCcCCCCCCHHHHH
Confidence 79999999999999999999999999999999999753 67999999998875 4567899999999999999999999
Q ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 007952 88 TYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTT 167 (583)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~~ 167 (583)
.+....+.. . .+ +++++++++.+||++. +. .+.+||||||||++||++|+.+|++|+|||||+|||+.+
T Consensus 100 ~~~~~~~~~-~---~~-~~~~~~~l~~~gl~~~-~~-----~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~ 168 (214)
T 1sgw_A 100 KAVASLYGV-K---VN-KNEIMDALESVEVLDL-KK-----KLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDS 168 (214)
T ss_dssp HHHHHHTTC-C---CC-HHHHHHHHHHTTCCCT-TS-----BGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTT
T ss_pred HHHHHhcCC-c---hH-HHHHHHHHHHcCCCcC-CC-----ChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHH
Confidence 987644211 1 11 4568889999999876 54 467999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeE
Q 007952 168 ALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 211 (583)
Q Consensus 168 ~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~i 211 (583)
+..+++.|++++++|+|||++||++.. +...+|+++++ +|+|
T Consensus 169 ~~~l~~~l~~~~~~g~tiiivtHd~~~-~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 169 KHKVLKSILEILKEKGIVIISSREELS-YCDVNENLHKY-STKI 210 (214)
T ss_dssp HHHHHHHHHHHHHHHSEEEEEESSCCT-TSSEEEEGGGG-BC--
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCHHH-HHHhCCEEEEe-CCcc
Confidence 999999999998779999999999764 66778887755 4554
No 32
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=2.1e-43 Score=356.22 Aligned_cols=199 Identities=30% Similarity=0.473 Sum_probs=166.7
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~lT 82 (583)
+.+|+|+|+++++||+++|+||||||||||+|+|+|... + +|+|.++|+++.+ ..++.++||+|++.+++ .|
T Consensus 33 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~-~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~t 108 (260)
T 2ghi_A 33 HRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD--A-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFN-ET 108 (260)
T ss_dssp SCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--C-EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCS-EE
T ss_pred CceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC--C-CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccc-cC
Confidence 469999999999999999999999999999999999763 4 7999999988742 24678999999999886 59
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC-------QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
|+||+.++. . ... ++++.+.++.+++.+. .++.++ +.+.+|||||||||+|||||+.+|++|+
T Consensus 109 v~enl~~~~----~-~~~----~~~~~~~l~~~~l~~~~~~l~~~~~~~~~-~~~~~LSgGqkqRv~lAraL~~~p~lll 178 (260)
T 2ghi_A 109 IKYNILYGK----L-DAT----DEEVIKATKSAQLYDFIEALPKKWDTIVG-NKGMKLSGGERQRIAIARCLLKDPKIVI 178 (260)
T ss_dssp HHHHHHTTC----T-TCC----HHHHHHHHHHTTCHHHHHTSTTGGGCEES-SSSBCCCHHHHHHHHHHHHHHHCCSEEE
T ss_pred HHHHHhccC----C-CCC----HHHHHHHHHHhCCHHHHHhcccccccccc-CCcCcCCHHHHHHHHHHHHHHcCCCEEE
Confidence 999998742 1 112 2345566666665432 333332 3578999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
|||||+|||+.++..+++.|+++++ |+|||++||++.. + +.||++++|++|+++..|+++++..
T Consensus 179 LDEPts~LD~~~~~~i~~~l~~l~~-~~tviivtH~~~~-~-~~~d~i~~l~~G~i~~~g~~~~l~~ 242 (260)
T 2ghi_A 179 FDEATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAHRLST-I-SSAESIILLNKGKIVEKGTHKDLLK 242 (260)
T ss_dssp EECCCCTTCHHHHHHHHHHHHHHTT-TSEEEEECSSGGG-S-TTCSEEEEEETTEEEEEECHHHHHH
T ss_pred EECccccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHH-H-HhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999965 8999999999764 4 5699999999999999999988753
No 33
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=4.4e-43 Score=354.00 Aligned_cols=193 Identities=24% Similarity=0.273 Sum_probs=168.9
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-cccccEE-EEccCCCCCCCCCHH
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-SLKSKIG-FVTQDDVLFPHLTVK 84 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-~~~~~i~-yv~Q~~~~~~~lTv~ 84 (583)
+.+|+|+|++++ ||+++|+||||||||||+|+|+|.. +.+|+|.++|+++.+ ..++.++ ||+|++.+ .+||+
T Consensus 18 ~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~---p~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l--~~tv~ 91 (263)
T 2pjz_A 18 RFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL---PYSGNIFINGMEVRKIRNYIRYSTNLPEAYEI--GVTVN 91 (263)
T ss_dssp EEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS---CCEEEEEETTEEGGGCSCCTTEEECCGGGSCT--TSBHH
T ss_pred ceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC---CCCcEEEECCEECcchHHhhheEEEeCCCCcc--CCcHH
Confidence 679999999999 9999999999999999999999964 468999999987642 1256799 99999887 78999
Q ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCC
Q 007952 85 ETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGL 163 (583)
Q Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgL 163 (583)
||+.+....+ .. .+++++++++.+||. +..++ .+.+||||||||++||+||+.+|++|+|||||+||
T Consensus 92 enl~~~~~~~---~~----~~~~~~~~l~~~gl~~~~~~~-----~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~L 159 (263)
T 2pjz_A 92 DIVYLYEELK---GL----DRDLFLEMLKALKLGEEILRR-----KLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENV 159 (263)
T ss_dssp HHHHHHHHHT---CC----CHHHHHHHHHHTTCCGGGGGS-----BGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTC
T ss_pred HHHHHhhhhc---ch----HHHHHHHHHHHcCCChhHhcC-----ChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccc
Confidence 9999876432 11 135688999999998 76665 45799999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcC-eEEEEcCCeEEEEcChhhHH
Q 007952 164 DSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFD-KLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 164 D~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D-~v~~L~~G~iv~~G~~~~~~ 221 (583)
|+.++..+++.|+++++ |||++||++. ++.+.|| ++++|++|++++.|+++++.
T Consensus 160 D~~~~~~l~~~L~~~~~---tviivtHd~~-~~~~~~d~~i~~l~~G~i~~~g~~~~l~ 214 (263)
T 2pjz_A 160 DAARRHVISRYIKEYGK---EGILVTHELD-MLNLYKEYKAYFLVGNRLQGPISVSELL 214 (263)
T ss_dssp CHHHHHHHHHHHHHSCS---EEEEEESCGG-GGGGCTTSEEEEEETTEEEEEEEHHHHH
T ss_pred CHHHHHHHHHHHHHhcC---cEEEEEcCHH-HHHHhcCceEEEEECCEEEEecCHHHHH
Confidence 99999999999998854 9999999975 4678999 99999999999999998875
No 34
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=1.2e-42 Score=344.34 Aligned_cols=190 Identities=29% Similarity=0.457 Sum_probs=156.4
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHH
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 85 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e 85 (583)
++++|+|+|+++++||+++|+||||||||||+|+|+|... +.+|+|.++| +++|++|++.+++. ||+|
T Consensus 20 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g---------~i~~v~q~~~~~~~-tv~e 87 (229)
T 2pze_A 20 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE--PSEGKIKHSG---------RISFCSQFSWIMPG-TIKE 87 (229)
T ss_dssp SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEECS---------CEEEECSSCCCCSB-CHHH
T ss_pred CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc--CCccEEEECC---------EEEEEecCCcccCC-CHHH
Confidence 5689999999999999999999999999999999999753 6799999998 49999999998885 9999
Q ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccc-------cccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeC
Q 007952 86 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ-------DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 158 (583)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDE 158 (583)
|+.++.. ... .+.++.++.+++.+.. ++.++ +.+.+||||||||++|||||+.+|++|+|||
T Consensus 88 nl~~~~~------~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~LSgGqkqrv~lAral~~~p~lllLDE 156 (229)
T 2pze_A 88 NIIFGVS------YDE----YRYRSVIKACQLEEDISKFAEKDNIVLG-EGGITLSGGQRARISLARAVYKDADLYLLDS 156 (229)
T ss_dssp HHHTTSC------CCH----HHHHHHHHHTTCHHHHTTSTTGGGSCBC-TTCTTSCHHHHHHHHHHHHHHSCCSEEEEES
T ss_pred HhhccCC------cCh----HHHHHHHHHhCcHHHHHhCccccccccc-CCCCcCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 9987421 111 1233444445554322 22222 3467999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHH-HHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 159 PTSGLDSTTALRIVQM-LQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 159 PtsgLD~~~~~~i~~~-l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
||+|||+.++..+++. +++++ +|+|||++||++. .+ +.||++++|++|++++.|+++++.
T Consensus 157 Pts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~~~ 217 (229)
T 2pze_A 157 PFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKME-HL-KKADKILILHEGSSYFYGTFSELQ 217 (229)
T ss_dssp TTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCCHH-HH-HHCSEEEEEETTEEEEEECHHHHH
T ss_pred cccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCChH-HH-HhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999997 45654 4899999999964 34 469999999999999999998874
No 35
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=2.8e-42 Score=343.46 Aligned_cols=194 Identities=25% Similarity=0.438 Sum_probs=155.4
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHH
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 85 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e 85 (583)
++.+|+|+|+++++||+++|+||||||||||+|+|+|... +.+|+|.++| .++||+|++.+ +.+||+|
T Consensus 17 ~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g---------~i~~v~Q~~~~-~~~tv~e 84 (237)
T 2cbz_A 17 DPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD--KVEGHVAIKG---------SVAYVPQQAWI-QNDSLRE 84 (237)
T ss_dssp SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSE--EEEEEEEECS---------CEEEECSSCCC-CSEEHHH
T ss_pred CCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECC---------EEEEEcCCCcC-CCcCHHH
Confidence 4689999999999999999999999999999999999653 6799999998 39999999865 5789999
Q ss_pred HHHHHHHcCCCCCCCHHHHHHHHHH---HHHHcCCCcc-ccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 007952 86 TLTYAALLRLPNTLTKQQKEKRAID---VINELGLERC-QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 161 (583)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~v~~---~l~~lgL~~~-~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPts 161 (583)
|+.++... ..+. .+++.+ +.+.+++.+. .++.+ ++.+.+||||||||++|||||+.+|++|+|||||+
T Consensus 85 nl~~~~~~------~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts 156 (237)
T 2cbz_A 85 NILFGCQL------EEPY-YRSVIQACALLPDLEILPSGDRTEI-GEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLS 156 (237)
T ss_dssp HHHTTSCC------CTTH-HHHHHHHTTCHHHHTTSTTGGGSEE-STTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTT
T ss_pred HhhCcccc------CHHH-HHHHHHHHhhHHHHHhccccccccc-cCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccc
Confidence 99875311 1111 111111 2233333221 12222 24578999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHH---HHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 162 GLDSTTALRIVQMLQ---DIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 162 gLD~~~~~~i~~~l~---~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
|||+.++..+++.|+ +++ +|+|||++||++.. + +.||++++|++|++++.|+++++.+
T Consensus 157 ~LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~~~~-~-~~~d~v~~l~~G~i~~~g~~~~~~~ 217 (237)
T 2cbz_A 157 AVDAHVGKHIFENVIGPKGML-KNKTRILVTHSMSY-L-PQVDVIIVMSGGKISEMGSYQELLA 217 (237)
T ss_dssp TSCHHHHHHHHHHTTSTTSTT-TTSEEEEECSCSTT-G-GGSSEEEEEETTEEEEEECHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHhhc-CCCEEEEEecChHH-H-HhCCEEEEEeCCEEEEeCCHHHHhh
Confidence 999999999999995 443 48999999999864 4 5799999999999999999988753
No 36
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=9.4e-43 Score=369.15 Aligned_cols=201 Identities=23% Similarity=0.381 Sum_probs=170.4
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPH 80 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~ 80 (583)
+++.+|+|+|++|++||+++|+||||||||||||+|+|.. + .+|+|.++|+++.. ..++.+|||+|++.+|+
T Consensus 32 ~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~--~-~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~- 107 (390)
T 3gd7_A 32 GGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL--N-TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFS- 107 (390)
T ss_dssp SSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCS--E-EEEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCS-
T ss_pred CCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCC--C-CCeEEEECCEECCcCChHHHhCCEEEEcCCcccCc-
Confidence 4578999999999999999999999999999999999965 3 68999999998753 24678999999999998
Q ss_pred CCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccC------ccCcccChHHHHHHHHHHHHHhCCCEE
Q 007952 81 LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGG------SFVRGVSGGERKRVCIGNEIIINPSLL 154 (583)
Q Consensus 81 lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~------~~~~~LSgGerqRv~ia~~L~~~p~il 154 (583)
+||+||+.+.. ... +++++++++.++|.+..+.+... +...+|||||||||+|||||+.+|++|
T Consensus 108 ~tv~enl~~~~------~~~----~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lL 177 (390)
T 3gd7_A 108 GTFRKNLDPNA------AHS----DQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKIL 177 (390)
T ss_dssp EEHHHHHCTTC------CSC----HHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred cCHHHHhhhcc------ccC----HHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEE
Confidence 69999996321 112 34678899999998776654321 112339999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 155 FLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
+|||||||||+.++.++.+.|+++. +++|+|++|||+. ....||+|++|++|+++..|+++++.+
T Consensus 178 LLDEPts~LD~~~~~~l~~~l~~~~-~~~tvi~vtHd~e--~~~~aDri~vl~~G~i~~~g~~~el~~ 242 (390)
T 3gd7_A 178 LLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEARIE--AMLECDQFLVIEENKVRQYDSILELYH 242 (390)
T ss_dssp EEESHHHHSCHHHHHHHHHHHHTTT-TTSCEEEECSSSG--GGTTCSEEEEEETTEEEEESSHHHHHH
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcCHH--HHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999864 4899999999963 456799999999999999999998754
No 37
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=3.4e-41 Score=377.45 Aligned_cols=201 Identities=27% Similarity=0.432 Sum_probs=172.3
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~lT 82 (583)
+++|+|+|+++++||+++|+||||||||||+|+|+|... +++|+|.+||+++.+ .+++.++||+|++.+++. |
T Consensus 356 ~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~--p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-t 432 (582)
T 3b60_A 356 VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD--IDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFND-T 432 (582)
T ss_dssp CCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC--CSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSS-B
T ss_pred CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccC--CCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCCC-C
Confidence 679999999999999999999999999999999999653 679999999998753 356789999999999985 9
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC-------QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
|+||+.++.. + ..+ +++++++++.+++.+. .++.+| +...+||||||||++|||||+.+|++|+
T Consensus 433 v~eni~~~~~---~-~~~----~~~~~~~l~~~~l~~~~~~~p~g~~~~~~-~~~~~LSgGq~qrl~iAral~~~p~ill 503 (582)
T 3b60_A 433 VANNIAYART---E-EYS----REQIEEAARMAYAMDFINKMDNGLDTIIG-ENGVLLSGGQRQRIAIARALLRDSPILI 503 (582)
T ss_dssp HHHHHHTTTT---S-CCC----HHHHHHHHHTTTCHHHHHHSTTGGGSBCC-TTSCSSCHHHHHHHHHHHHHHHCCSEEE
T ss_pred HHHHHhccCC---C-CCC----HHHHHHHHHHcCCHHHHHhcccccccccc-CCCCCCCHHHHHHHHHHHHHHhCCCEEE
Confidence 9999987521 1 122 2446677777777543 345554 3468899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
|||||||||+.++..+.+.|+++++ |+|+|+++|+++. + +.||++++|++|++++.|+++++.+
T Consensus 504 lDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~-~-~~~d~i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b60_A 504 LDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLST-I-EQADEIVVVEDGIIVERGTHSELLA 567 (582)
T ss_dssp EETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGGG-T-TTCSEEEEEETTEEEEEECHHHHHH
T ss_pred EECccccCCHHHHHHHHHHHHHHhC-CCEEEEEeccHHH-H-HhCCEEEEEECCEEEEecCHHHHHH
Confidence 9999999999999999999999875 9999999999864 4 5799999999999999999998864
No 38
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=1.7e-41 Score=379.49 Aligned_cols=201 Identities=32% Similarity=0.516 Sum_probs=169.5
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~l 81 (583)
++++|+|+|+++++||++||+||||||||||+|+|+|... +++|+|.+||+++.+ .+++++|||+|++.+|+.
T Consensus 353 ~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~--p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~- 429 (578)
T 4a82_A 353 EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD--VTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSD- 429 (578)
T ss_dssp SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC--CSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSS-
T ss_pred CCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCC--CCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcc-
Confidence 4679999999999999999999999999999999999653 679999999998753 357789999999999986
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCccCcccChHHHHHHHHHHHHHhCCCEE
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-------RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLL 154 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~il 154 (583)
||+||+.++. + ..+. +++.+.++..++. +-.++.+| +...+||||||||++|||||+.+|++|
T Consensus 430 tv~eni~~~~----~-~~~~----~~~~~~~~~~~~~~~~~~lp~g~~t~~~-~~g~~LSgGq~Qrv~lAral~~~p~il 499 (578)
T 4a82_A 430 TVKENILLGR----P-TATD----EEVVEAAKMANAHDFIMNLPQGYDTEVG-ERGVKLSGGQKQRLSIARIFLNNPPIL 499 (578)
T ss_dssp BHHHHHGGGC----S-SCCH----HHHHHHHHHTTCHHHHHTSTTGGGCBCC-GGGTTSCHHHHHHHHHHHHHHHCCSEE
T ss_pred cHHHHHhcCC----C-CCCH----HHHHHHHHHhCcHHHHHhCcchhhhhhc-cCCCcCCHHHHHHHHHHHHHHcCCCEE
Confidence 9999998752 1 1222 2344555555443 33456665 446789999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 155 FLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
+|||||||||+.++..+.+.++++. +++|+|+++|+++. + +.||+|++|++|++++.|+++++.+
T Consensus 500 llDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~-~-~~~d~i~~l~~G~i~~~g~~~el~~ 564 (578)
T 4a82_A 500 ILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLST-I-THADKIVVIENGHIVETGTHRELIA 564 (578)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGGG-T-TTCSEEEEEETTEEEEEECHHHHHH
T ss_pred EEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HcCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999985 47999999999864 4 5699999999999999999999864
No 39
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=2.7e-41 Score=379.11 Aligned_cols=203 Identities=31% Similarity=0.516 Sum_probs=170.4
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~lT 82 (583)
+++|+|+|+++++||++||+||||||||||+|+|+|... +++|+|.+||+++.+ .++++++||+|++.+++. |
T Consensus 357 ~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~--p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~-t 433 (595)
T 2yl4_A 357 VPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYD--PASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSC-S 433 (595)
T ss_dssp SEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSC--CSEEEEEETTEETTTBCHHHHHHSEEEECSSCCCCSS-B
T ss_pred CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCcEEEECCEEhhhCCHHHHHhceEEEccCCcccCC-C
Confidence 469999999999999999999999999999999999653 679999999998753 356789999999999875 9
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-------CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
|+||+.++... ....+ +++++++++.+++.+ ..|+.+|. ...+||||||||++|||||+++|++|+
T Consensus 434 v~eni~~~~~~--~~~~~----~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~-~~~~LSgGq~qrv~iAral~~~p~ill 506 (595)
T 2yl4_A 434 IAENIAYGADD--PSSVT----AEEIQRVAEVANAVAFIRNFPQGFNTVVGE-KGVLLSGGQKQRIAIARALLKNPKILL 506 (595)
T ss_dssp HHHHHHTTSSS--TTTSC----HHHHHHHHHHTTCHHHHHTSSSGGGCBCSS-SSCCCCHHHHHHHHHHHHHHHCCSEEE
T ss_pred HHHHHhhcCCC--ccccC----HHHHHHHHHHcCCHHHHHhCcccccccccC-CCCcCCHHHHHHHHHHHHHHcCCCEEE
Confidence 99999885311 00122 345677788877643 34666653 468899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
|||||+|||+.++..+.+.|+++.+ |+|+|+++|+++. + +.||++++|++|++++.|+++++.+
T Consensus 507 lDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~-~-~~~d~i~~l~~G~i~~~g~~~~l~~ 570 (595)
T 2yl4_A 507 LDEATSALDAENEYLVQEALDRLMD-GRTVLVIAHRLST-I-KNANMVAVLDQGKITEYGKHEELLS 570 (595)
T ss_dssp EECCCSSCCHHHHHHHHHHHHHHHT-TSEEEEECCCHHH-H-HHSSEEEEEETTEEEEEECSCC---
T ss_pred EECcccCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHH-H-HcCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999876 8999999999753 4 5699999999999999999988753
No 40
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.8e-41 Score=379.68 Aligned_cols=202 Identities=28% Similarity=0.462 Sum_probs=168.6
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPH 80 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~ 80 (583)
+++++|+|+|+++++||+++|+||||||||||+|+|+|... +.+|+|.+||+++.+ .+|++++||+|++.+|+.
T Consensus 354 ~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~--~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ 431 (587)
T 3qf4_A 354 NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLID--PERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSG 431 (587)
T ss_dssp SSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSC--CSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSE
T ss_pred CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc--CCCcEEEECCEEcccCCHHHHHhheEEECCCCcCcCc
Confidence 35679999999999999999999999999999999999653 679999999998753 357789999999999975
Q ss_pred CCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCccCcccChHHHHHHHHHHHHHhCCCE
Q 007952 81 LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL-------ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSL 153 (583)
Q Consensus 81 lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~i 153 (583)
||+||+.++. + ..+.++ +.+.++..++ .+-.++.+| +...+||||||||++|||||+.+|++
T Consensus 432 -tv~eni~~~~----~-~~~~~~----~~~~~~~~~~~~~i~~l~~g~~~~~~-~~~~~LSgGqrQrv~lARal~~~p~i 500 (587)
T 3qf4_A 432 -TIKENLKWGR----E-DATDDE----IVEAAKIAQIHDFIISLPEGYDSRVE-RGGRNFSGGQKQRLSIARALVKKPKV 500 (587)
T ss_dssp -EHHHHHTTTC----S-SCCHHH----HHHHHHHTTCHHHHHTSSSGGGCEEC-SSSCSSCHHHHHHHHHHHHHHTCCSE
T ss_pred -cHHHHHhccC----C-CCCHHH----HHHHHHHhCcHHHHHhcccchhhHhc-CCCCCcCHHHHHHHHHHHHHHcCCCE
Confidence 9999998742 1 122322 2333333333 333455554 45779999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 154 LFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 154 llLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
|+||||||+||+.++.++.+.|+++. +|+|+|+++|+++. .+.||+|++|++|++++.|+++|+.+
T Consensus 501 lllDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~--~~~~d~i~vl~~G~i~~~g~~~el~~ 566 (587)
T 3qf4_A 501 LILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIITQKIPT--ALLADKILVLHEGKVAGFGTHKELLE 566 (587)
T ss_dssp EEEESCCTTSCHHHHHHHHHHHHHHS-TTCEEEEEESCHHH--HTTSSEEEEEETTEEEEEECHHHHHH
T ss_pred EEEECCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecChHH--HHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999985 58999999999753 46899999999999999999999865
No 41
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=2.7e-41 Score=378.19 Aligned_cols=201 Identities=29% Similarity=0.474 Sum_probs=171.5
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~lT 82 (583)
+++|+|+|+++++||+++|+||||||||||+|+|+|... +++|+|.+||+++.+ .+++.+|||+|++.+++. |
T Consensus 356 ~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~--p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-t 432 (582)
T 3b5x_A 356 KPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYD--VDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFND-T 432 (582)
T ss_pred ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccc-c
Confidence 679999999999999999999999999999999999653 678999999988742 357789999999999975 9
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC-------QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
|+||+.++.. + ..+ +++++++++.+++.+. .|+.+| +...+||||||||++|||||+.+|++|+
T Consensus 433 v~eni~~~~~---~-~~~----~~~~~~~~~~~~l~~~~~~~p~g~~t~~~-~~~~~LSgGq~qr~~iAral~~~p~ill 503 (582)
T 3b5x_A 433 IANNIAYAAE---G-EYT----REQIEQAARQAHAMEFIENMPQGLDTVIG-ENGTSLSGGQRQRVAIARALLRDAPVLI 503 (582)
T ss_pred HHHHHhccCC---C-CCC----HHHHHHHHHHCCCHHHHHhCcccccchhc-CCCCcCCHHHHHHHHHHHHHHcCCCEEE
Confidence 9999988531 1 122 3446777777777543 344554 3467899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
|||||+|||+.++..+.+.|+++++ |+|+|+++|+++. + +.||++++|++|++++.|+++++.+
T Consensus 504 lDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~-~-~~~d~i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b5x_A 504 LDEATSALDTESERAIQAALDELQK-NKTVLVIAHRLST-I-EQADEILVVDEGEIIERGRHADLLA 567 (582)
T ss_pred EECccccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHHH-H-HhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999865 9999999999753 4 5799999999999999999998753
No 42
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=4.5e-41 Score=377.31 Aligned_cols=201 Identities=33% Similarity=0.507 Sum_probs=167.9
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~l 81 (583)
++++|+|+|+++++||+++|+||||||||||+|+|+|... +++|+|.+||+++.+ .+|++++||+|++.+|+.
T Consensus 367 ~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~--p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~- 443 (598)
T 3qf4_B 367 KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYD--VDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFST- 443 (598)
T ss_dssp SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSC--CSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSS-
T ss_pred CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcC--CCCeEEEECCEEhhhCCHHHHHhceEEEeCCCccccc-
Confidence 4679999999999999999999999999999999999653 679999999998753 357789999999999874
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCccCcccChHHHHHHHHHHHHHhCCCEE
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-------CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLL 154 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~il 154 (583)
||+||+.++. + ..+. +++.+.++..++.+ -.++.+| +...+||||||||++|||||+.+|++|
T Consensus 444 tv~eni~~~~----~-~~~~----~~~~~~~~~~~~~~~~~~~~~g~~t~~~-~~g~~LSgGq~Qrv~iAral~~~p~il 513 (598)
T 3qf4_B 444 TVKENLKYGN----P-GATD----EEIKEAAKLTHSDHFIKHLPEGYETVLT-DNGEDLSQGQRQLLAITRAFLANPKIL 513 (598)
T ss_dssp BHHHHHHSSS----T-TCCT----THHHHHTTTTTCHHHHHTSTTGGGCBCH-HHHTTSCHHHHHHHHHHHHHHTCCSEE
T ss_pred cHHHHHhcCC----C-CCCH----HHHHHHHHHhCCHHHHHhccccccchhc-CCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999998752 1 1122 22344454444432 3345444 345789999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 155 FLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
+||||||+||+.++..+.+.|+++. +|+|+|+++|+++. + +.||+|++|++|++++.|+++++.+
T Consensus 514 llDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~-~-~~~d~i~~l~~G~i~~~g~~~~l~~ 578 (598)
T 3qf4_B 514 ILDEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHRLNT-I-KNADLIIVLRDGEIVEMGKHDELIQ 578 (598)
T ss_dssp EECCCCTTCCHHHHHHHHHHHHHHH-TTSEEEEESCCTTH-H-HHCSEEEEECSSSEEECSCHHHHHH
T ss_pred EEECCccCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HcCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999986 59999999999874 4 5599999999999999999999864
No 43
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=2.2e-40 Score=338.68 Aligned_cols=189 Identities=29% Similarity=0.460 Sum_probs=153.6
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHH
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 85 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e 85 (583)
.+.+|+|+|+++++||+++|+||||||||||+|+|+|... +.+|+|.++| +++||+|++.+++. ||+|
T Consensus 50 ~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g---------~i~~v~Q~~~l~~~-tv~e 117 (290)
T 2bbs_A 50 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE--PSEGKIKHSG---------RISFCSQNSWIMPG-TIKE 117 (290)
T ss_dssp CCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSC--EEEEEEECCS---------CEEEECSSCCCCSS-BHHH
T ss_pred CceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECC---------EEEEEeCCCccCcc-cHHH
Confidence 3679999999999999999999999999999999999653 6799999998 49999999998885 9999
Q ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccc-------cccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeC
Q 007952 86 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ-------DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 158 (583)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDE 158 (583)
|+. +. . ... .++++.++.+++.+.. ++.++ ..+.+||||||||++|||+|+.+|++|+|||
T Consensus 118 nl~-~~--~----~~~----~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~~LSgGq~QRv~lAraL~~~p~lllLDE 185 (290)
T 2bbs_A 118 NII-GV--S----YDE----YRYRSVIKACQLEEDISKFAEKDNIVLG-EGGITLSGGQRARISLARAVYKDADLYLLDS 185 (290)
T ss_dssp HHH-TT--C----CCH----HHHHHHHHHTTCHHHHHTSTTGGGCBC-----CCCCHHHHHHHHHHHHHHSCCSEEEEES
T ss_pred Hhh-Cc--c----cch----HHHHHHHHHhChHHHHHhccccccchhc-CccCcCCHHHHHHHHHHHHHHCCCCEEEEEC
Confidence 997 31 1 111 1233445555554322 22222 2357999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHH-HHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 007952 159 PTSGLDSTTALRIVQML-QDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 221 (583)
Q Consensus 159 PtsgLD~~~~~~i~~~l-~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 221 (583)
||+|||+.++..+++.+ ++++ +|+|||++||++. .+ +.||++++|++|++++.|+++++.
T Consensus 186 Pts~LD~~~~~~i~~~ll~~~~-~~~tviivtHd~~-~~-~~~d~i~~l~~G~i~~~g~~~~l~ 246 (290)
T 2bbs_A 186 PFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKME-HL-KKADKILILHEGSSYFYGTFSELQ 246 (290)
T ss_dssp TTTTCCHHHHHHHHHHCCCCCT-TTSEEEEECCCHH-HH-HHSSEEEEEETTEEEEEECHHHHH
T ss_pred CcccCCHHHHHHHHHHHHHHhh-CCCEEEEEecCHH-HH-HcCCEEEEEECCeEEEeCCHHHHh
Confidence 99999999999999974 5554 4899999999974 34 569999999999999999998874
No 44
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=9.6e-40 Score=394.71 Aligned_cols=204 Identities=29% Similarity=0.507 Sum_probs=174.8
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPH 80 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~ 80 (583)
.++++|+|+|++|+|||.+||+||||||||||+++|.|... +.+|+|.+||.++.+ .+|++++|||||+.+|+.
T Consensus 1090 ~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~--p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~g 1167 (1321)
T 4f4c_A 1090 PEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYD--TLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDC 1167 (1321)
T ss_dssp CSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSC--CSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSE
T ss_pred CCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCcc--CCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCc
Confidence 34579999999999999999999999999999999998653 678999999999864 578999999999999986
Q ss_pred CCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCccCcccChHHHHHHHHHHHHHhCCCE
Q 007952 81 LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL-------ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSL 153 (583)
Q Consensus 81 lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~i 153 (583)
|++|||.|+. .|...+.+ ++.+.++..++ ++-.||.+|. ...+||||||||++|||||+++|+|
T Consensus 1168 -TIreNI~~gl---d~~~~sd~----ei~~Al~~a~l~~~I~~Lp~GldT~vge-~G~~LSgGQrQriaiARAllr~~~I 1238 (1321)
T 4f4c_A 1168 -SIAENIIYGL---DPSSVTMA----QVEEAARLANIHNFIAELPEGFETRVGD-RGTQLSGGQKQRIAIARALVRNPKI 1238 (1321)
T ss_dssp -EHHHHHSSSS---CTTTSCHH----HHHHHHHHTTCHHHHHTSTTTTCSEETT-TSCSSCHHHHHHHHHHHHHHSCCSE
T ss_pred -cHHHHHhccC---CCCCCCHH----HHHHHHHHhCChHHHHcCcCCCCCEecC-CCcccCHHHHHHHHHHHHHHhCCCE
Confidence 9999998752 12233433 34555555554 4556888874 4578999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 154 LFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 154 llLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
|+||||||+||+.+...|.+.|+++. +|+|+|+++|+++. ...||+|++|++|+|+++|+++++++
T Consensus 1239 LiLDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLsT--i~~aD~I~Vld~G~IvE~Gth~eLl~ 1304 (1321)
T 4f4c_A 1239 LLLDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLNT--VMNADCIAVVSNGTIIEKGTHTQLMS 1304 (1321)
T ss_dssp EEEESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSST--TTTCSEEEEESSSSEEEEECHHHHHH
T ss_pred EEEeCccccCCHHHHHHHHHHHHHHc-CCCEEEEeccCHHH--HHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999998865 48999999999875 46799999999999999999999985
No 45
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=1.1e-38 Score=385.38 Aligned_cols=202 Identities=29% Similarity=0.475 Sum_probs=174.0
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPH 80 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~ 80 (583)
.++++|+|+|+++++||.+||+||||||||||+++|.|... +.+|+|.+||.++++ .+|++||||+|++.+|..
T Consensus 429 ~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~--~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~ 506 (1321)
T 4f4c_A 429 PDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYD--VLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNC 506 (1321)
T ss_dssp TTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSC--CSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSE
T ss_pred CCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccc--cccCcccCCCccchhccHHHHhhcccccCCcceeeCC
Confidence 46789999999999999999999999999999999999653 679999999998863 467889999999999976
Q ss_pred CCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCccCcccChHHHHHHHHHHHHHhCCCE
Q 007952 81 LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG-------LERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSL 153 (583)
Q Consensus 81 lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~i 153 (583)
|++|||.|+. + ..+.+ ++.++++..+ |++-.+|.+|. ...+||||||||++||||+++||+|
T Consensus 507 -TI~eNI~~g~----~-~~~~~----~v~~a~~~a~l~~~i~~lp~G~~T~vGe-~G~~LSGGQkQRiaiARAl~~~~~I 575 (1321)
T 4f4c_A 507 -TIEENISLGK----E-GITRE----EMVAACKMANAEKFIKTLPNGYNTLVGD-RGTQLSGGQKQRIAIARALVRNPKI 575 (1321)
T ss_dssp -EHHHHHHTTC----T-TCCHH----HHHHHHHHTTCHHHHHHSTTTTSSEESS-SSCCCCHHHHHHHHHHHHHTTCCSE
T ss_pred -chhHHHhhhc----c-cchHH----HHHHHHHHccchhHHHcCCCCCccEecC-CCCCCCHHHHHHHHHHHHHccCCCE
Confidence 9999999862 1 23333 3444444443 35566888885 4678999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 154 LFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 154 llLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
|+||||||+||+.+...+.+.|+++.+ |+|+|+++|+++. .+.||+|++|++|+|++.|+++|+.+
T Consensus 576 liLDE~tSaLD~~te~~i~~~l~~~~~-~~T~iiiaHrls~--i~~aD~Iivl~~G~ive~Gth~eL~~ 641 (1321)
T 4f4c_A 576 LLLDEATSALDAESEGIVQQALDKAAK-GRTTIIIAHRLST--IRNADLIISCKNGQVVEVGDHRALMA 641 (1321)
T ss_dssp EEEESTTTTSCTTTHHHHHHHHHHHHT-TSEEEEECSCTTT--TTTCSEEEEEETTEEEEEECHHHHHT
T ss_pred EEEecccccCCHHHHHHHHHHHHHHhC-CCEEEEEcccHHH--HHhCCEEEEeeCCeeeccCCHHHHHH
Confidence 999999999999999999999999864 8999999999864 57899999999999999999999864
No 46
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=8.1e-38 Score=377.05 Aligned_cols=203 Identities=30% Similarity=0.493 Sum_probs=168.8
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~l 81 (583)
++++|+|+|+++++||++||+||||||||||+++|+|... +++|+|.+||+++.+ .+|+.+|||+|++.+++.
T Consensus 402 ~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~--~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~- 478 (1284)
T 3g5u_A 402 EVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYD--PLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFAT- 478 (1284)
T ss_dssp SCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSC--CSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSS-
T ss_pred CCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCc-
Confidence 3579999999999999999999999999999999999653 679999999998753 457789999999999986
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHH-----HHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEE
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRA-----IDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFL 156 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v-----~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illL 156 (583)
||+||+.++.. ..+.++..+.+ ++.++. +.+..++.+| +...+||||||||++|||||+.+|+||+|
T Consensus 479 ti~eNi~~g~~-----~~~~~~~~~~~~~~~~~~~i~~--l~~g~~t~~~-~~g~~LSgGq~QriaiARal~~~p~iliL 550 (1284)
T 3g5u_A 479 TIAENIRYGRE-----DVTMDEIEKAVKEANAYDFIMK--LPHQFDTLVG-ERGAQLSGGQKQRIAIARALVRNPKILLL 550 (1284)
T ss_dssp CHHHHHHHHCS-----SCCHHHHHHHHHHTTCHHHHHH--STTGGGCCCS-SSSCSSCHHHHHHHHHHHHHHHCCSEEEE
T ss_pred cHHHHHhcCCC-----CCCHHHHHHHHHHhCcHHHHHh--cccccccccc-CCCCccCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999998731 12333332222 222333 3344567776 34678999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 157 DEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 157 DEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
|||||+||+.+...+.+.++++. +|+|+|+++|+++. + ..||+|++|++|++++.|+++++.+
T Consensus 551 DEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~-i-~~~d~i~vl~~G~i~~~g~~~~l~~ 613 (1284)
T 3g5u_A 551 DEATSALDTESEAVVQAALDKAR-EGRTTIVIAHRLST-V-RNADVIAGFDGGVIVEQGNHDELMR 613 (1284)
T ss_dssp ESTTCSSCHHHHHHHHHHHHHHH-TTSEEEEECSCHHH-H-TTCSEEEECSSSCCCCEECHHHHHH
T ss_pred ECCCCCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HcCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999998875 59999999999753 4 5599999999999999999999864
No 47
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=6.1e-37 Score=369.44 Aligned_cols=202 Identities=26% Similarity=0.487 Sum_probs=168.6
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~lT 82 (583)
+++|+|+|+++++||++||+||||||||||+++|+|... +.+|+|.+||+++.+ .+|++++|||||+.+++ .|
T Consensus 1046 ~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~--p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~-~t 1122 (1284)
T 3g5u_A 1046 IPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYD--PMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFD-CS 1122 (1284)
T ss_dssp CCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSC--CSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCS-SB
T ss_pred CeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCEEcccCCHHHHHhceEEECCCCcccc-cc
Confidence 469999999999999999999999999999999999653 679999999998753 35788999999998886 59
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELG-------LERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
|+||+.++.. ....+.++. .+.++..+ +.+..||.+|. ...+||||||||++|||+|+.+|++|+
T Consensus 1123 i~eNi~~~~~---~~~~~~~~i----~~~~~~~~~~~~i~~l~~gldt~vge-~G~~LSgGq~Qrv~iARal~~~p~iLi 1194 (1284)
T 3g5u_A 1123 IAENIAYGDN---SRVVSYEEI----VRAAKEANIHQFIDSLPDKYNTRVGD-KGTQLSGGQKQRIAIARALVRQPHILL 1194 (1284)
T ss_dssp HHHHHTCCCS---SCCCCHHHH----HHHHHHHTCHHHHSSTTTGGGCBCST-TSCSSCHHHHHHHHHHHHHHHCCSSEE
T ss_pred HHHHHhccCC---CCCCCHHHH----HHHHHHhCcHHHHHhCccccccccCC-CCCccCHHHHHHHHHHHHHHcCCCEEE
Confidence 9999987421 112333333 23333333 34455777763 467899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
|||||+|||+.++..+.+.|+++. +|+|+|+++|+++. + +.||+|++|++|++++.|+++++.+
T Consensus 1195 LDEpTs~lD~~~~~~i~~~l~~~~-~~~tvi~isH~l~~-i-~~~dri~vl~~G~i~~~g~~~~l~~ 1258 (1284)
T 3g5u_A 1195 LDEATSALDTESEKVVQEALDKAR-EGRTCIVIAHRLST-I-QNADLIVVIQNGKVKEHGTHQQLLA 1258 (1284)
T ss_dssp EESCSSSCCHHHHHHHHHHHHHHS-SSSCEEEECSCTTG-G-GSCSEEEEEETBEEEEEECHHHHHH
T ss_pred EeCCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecCHHH-H-HcCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999998854 59999999999874 5 5699999999999999999999864
No 48
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=4.9e-36 Score=335.21 Aligned_cols=190 Identities=25% Similarity=0.324 Sum_probs=162.9
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHHHHH
Q 007952 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLT 88 (583)
Q Consensus 9 iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~l~ 88 (583)
.|+++|+++++||+++|+||||||||||+|+|+|... +++|+|.+ ...+||++|+....+.+||.|++.
T Consensus 371 ~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~---------~~~i~~v~Q~~~~~~~~tv~e~~~ 439 (607)
T 3bk7_A 371 KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEE--PTEGKVEW---------DLTVAYKPQYIKAEYEGTVYELLS 439 (607)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC--CSBSCCCC---------CCCEEEECSSCCCCCSSBHHHHHH
T ss_pred EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEE---------eeEEEEEecCccCCCCCcHHHHHH
Confidence 5788888899999999999999999999999999653 57899875 246999999988778899999887
Q ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHH
Q 007952 89 YAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTA 168 (583)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~~~ 168 (583)
..... .....++++++++.+|+.+..++ .+.+|||||||||+||++|+.+|++|+|||||+|||+.++
T Consensus 440 ~~~~~-------~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~ 507 (607)
T 3bk7_A 440 KIDSS-------KLNSNFYKTELLKPLGIIDLYDR-----NVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQR 507 (607)
T ss_dssp HHHHH-------HHHCHHHHHHTHHHHTCTTTTTS-----BGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHH
T ss_pred hhhcc-------CCCHHHHHHHHHHHcCCchHhcC-----ChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHH
Confidence 64110 00123567889999999877665 4579999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH-CCcEEEEEecCCChHHHhhcCeEEEEcC--CeEEEEcChhhHHH
Q 007952 169 LRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGK--GSLLYFGKASEAMA 222 (583)
Q Consensus 169 ~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~--G~iv~~G~~~~~~~ 222 (583)
..+++.|+++++ +|+|||++|||+. .+..+||++++|++ |+++..|+++++..
T Consensus 508 ~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 508 LAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 999999999974 6999999999964 57789999999986 88889999988765
No 49
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=4.5e-36 Score=331.97 Aligned_cols=190 Identities=25% Similarity=0.334 Sum_probs=161.5
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHHHHH
Q 007952 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLT 88 (583)
Q Consensus 9 iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~l~ 88 (583)
.|+++|+++++||+++|+||||||||||+|+|+|... +.+|+|.+ ...++||+|+....+.+||.|++.
T Consensus 301 ~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~i~~---------~~~i~~v~Q~~~~~~~~tv~~~~~ 369 (538)
T 1yqt_A 301 RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEE--PTEGKIEW---------DLTVAYKPQYIKADYEGTVYELLS 369 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC--CSBCCCCC---------CCCEEEECSSCCCCCSSBHHHHHH
T ss_pred EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEE---------CceEEEEecCCcCCCCCcHHHHHH
Confidence 5777888889999999999999999999999999653 57899875 246999999988778899999886
Q ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHH
Q 007952 89 YAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTA 168 (583)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~~~ 168 (583)
....... ...++++++++.+|+.+..++ .+.+|||||||||+||++|+.+|++|+|||||+|||+.++
T Consensus 370 ~~~~~~~-------~~~~~~~~~l~~~~l~~~~~~-----~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~ 437 (538)
T 1yqt_A 370 KIDASKL-------NSNFYKTELLKPLGIIDLYDR-----EVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQR 437 (538)
T ss_dssp HHHHHHH-------TCHHHHHHTTTTTTCGGGTTS-----BGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHH
T ss_pred hhhccCC-------CHHHHHHHHHHHcCChhhhcC-----ChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHH
Confidence 5311100 113467889999999876655 4679999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH-CCcEEEEEecCCChHHHhhcCeEEEEcC--CeEEEEcChhhHHH
Q 007952 169 LRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGK--GSLLYFGKASEAMA 222 (583)
Q Consensus 169 ~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~--G~iv~~G~~~~~~~ 222 (583)
..+++.|+++++ .|.|||++|||+. ++.++||++++|++ |+++..|+++++..
T Consensus 438 ~~i~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 438 LAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp HHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 999999999974 5999999999964 57789999999986 78889999988765
No 50
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=2.3e-35 Score=325.68 Aligned_cols=191 Identities=23% Similarity=0.267 Sum_probs=159.4
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHHHHH
Q 007952 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLT 88 (583)
Q Consensus 9 iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~l~ 88 (583)
.|+++|+++++||+++|+||||||||||+|+|+|... +++|+|.+++ +.++|++|+......+||+|++.
T Consensus 283 ~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~~--------~~i~~~~q~~~~~~~~tv~~~l~ 352 (538)
T 3ozx_A 283 QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEIT--ADEGSVTPEK--------QILSYKPQRIFPNYDGTVQQYLE 352 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSBCCEESSC--------CCEEEECSSCCCCCSSBHHHHHH
T ss_pred EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECC--------eeeEeechhcccccCCCHHHHHH
Confidence 4666788899999999999999999999999999653 6789998764 35899999977777899999998
Q ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHH
Q 007952 89 YAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTA 168 (583)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~~~ 168 (583)
+..... .. .....++++++.++|.+..++ .+.+|||||||||+||++|+.+|++|+|||||+|||+.++
T Consensus 353 ~~~~~~----~~--~~~~~~~~~l~~~~l~~~~~~-----~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~ 421 (538)
T 3ozx_A 353 NASKDA----LS--TSSWFFEEVTKRLNLHRLLES-----NVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEER 421 (538)
T ss_dssp HHCSST----TC--TTSHHHHHTTTTTTGGGCTTS-----BGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHH
T ss_pred Hhhhhc----cc--hhHHHHHHHHHHcCCHHHhcC-----ChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHH
Confidence 742111 10 112457788999999877665 4679999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH-CCcEEEEEecCCChHHHhhcCeEEEEcC--CeEEEEcChhhHH
Q 007952 169 LRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGK--GSLLYFGKASEAM 221 (583)
Q Consensus 169 ~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~--G~iv~~G~~~~~~ 221 (583)
..+++.|+++++ .|+|||++|||+. ++..+||+|++|++ |.....+++.++.
T Consensus 422 ~~i~~~l~~l~~~~g~tvi~vsHdl~-~~~~~aDri~vl~~~~~~~~~~~~~~~~~ 476 (538)
T 3ozx_A 422 YIVAKAIKRVTRERKAVTFIIDHDLS-IHDYIADRIIVFKGEPEKAGLATSPVTLK 476 (538)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceeccCCChHHHH
Confidence 999999999975 5899999999964 57789999999986 5666777766543
No 51
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=1.6e-35 Score=336.83 Aligned_cols=206 Identities=25% Similarity=0.367 Sum_probs=141.0
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHH---------------------HHHhCCCCCCCc-------ccEEEECC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLL---------------------NLLSGRLMEPTV-------GGSITYND 57 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl---------------------~~l~g~~~~~~~-------~G~I~~~g 57 (583)
.+.+|+||||+|++||+++|+||||||||||+ +++.|... +. .|.|.++|
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~--~~~~~i~~~~~~i~~~~ 107 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEK--PDVDAIEGLSPAISIDQ 107 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC----------------CCCSEEESCCCEEEESS
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhccccc--CCccceeccccceEecC
Confidence 45789999999999999999999999999998 77777543 22 56777888
Q ss_pred ccCCccccccEEEEccCCCC-------------------CCCCCHHHHHHHHHHcCCCCCCCHHHHHH------HHHHHH
Q 007952 58 HPYSKSLKSKIGFVTQDDVL-------------------FPHLTVKETLTYAALLRLPNTLTKQQKEK------RAIDVI 112 (583)
Q Consensus 58 ~~~~~~~~~~i~yv~Q~~~~-------------------~~~lTv~e~l~~~~~~~~~~~~~~~~~~~------~v~~~l 112 (583)
.+.....++.+++|+|...+ ++.+||+||+.+......... ..+..+. ...+++
T Consensus 108 ~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l 186 (670)
T 3ux8_A 108 KTTSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEK-EAQIARLILREIRDRLGFL 186 (670)
T ss_dssp CC-----CCBHHHHTTCC-------------------------CC---------------------------CHHHHHHH
T ss_pred chhhccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchh-hhHHHHHHHHHHHHHHHHH
Confidence 76544344556666664332 467899999987532221110 0000001 112458
Q ss_pred HHcCCCcc-ccccccCccCcccChHHHHHHHHHHHHHhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEe
Q 007952 113 NELGLERC-QDTMIGGSFVRGVSGGERKRVCIGNEIIINPS--LLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTI 189 (583)
Q Consensus 113 ~~lgL~~~-~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~--illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~ 189 (583)
+.+||.+. .++ .+.+|||||||||+|||||+.+|+ +|+|||||+|||+.++..+++.|++++++|+|||++|
T Consensus 187 ~~~gL~~~~~~~-----~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vt 261 (670)
T 3ux8_A 187 QNVGLDYLTLSR-----SAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVE 261 (670)
T ss_dssp HHTTCTTCCTTC-----BGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHcCCchhhhcC-----CcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 88999764 344 467999999999999999999998 9999999999999999999999999998899999999
Q ss_pred cCCChHHHhhcCeEEEE------cCCeEEEEcChhhHH
Q 007952 190 HQPSSRLFHKFDKLILL------GKGSLLYFGKASEAM 221 (583)
Q Consensus 190 H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~ 221 (583)
||+. . ...||++++| ++|++++.|+++++.
T Consensus 262 Hd~~-~-~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~ 297 (670)
T 3ux8_A 262 HDED-T-MLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 297 (670)
T ss_dssp CCHH-H-HHHCSEEEEECSSSGGGCCSEEEEECHHHHH
T ss_pred CCHH-H-HhhCCEEEEecccccccCCEEEEecCHHHHh
Confidence 9964 3 4569999999 899999999998875
No 52
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.4e-35 Score=326.30 Aligned_cols=192 Identities=25% Similarity=0.288 Sum_probs=161.0
Q ss_pred cceeeceEEEEeCC-----eEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCC
Q 007952 7 KDILNGITGSVNPG-----EVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 7 ~~iL~~vs~~i~~G-----e~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~l 81 (583)
+.+++|+|+++++| |+++|+||||||||||+|+|+|... +++|+. + .+..++|++|+.......
T Consensus 360 ~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~--p~~G~~------~---~~~~i~~~~q~~~~~~~~ 428 (608)
T 3j16_B 360 KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALK--PDEGQD------I---PKLNVSMKPQKIAPKFPG 428 (608)
T ss_dssp EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSC--CSBCCC------C---CSCCEEEECSSCCCCCCS
T ss_pred ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCC--CCCCcC------c---cCCcEEEecccccccCCc
Confidence 35789999999999 7899999999999999999999763 567752 1 134699999997766667
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 161 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPts 161 (583)
||+|++... .+. ... ..+.++++++.++|.+..++ .+.+|||||||||+||++|+.+|++|+|||||+
T Consensus 429 tv~e~~~~~--~~~--~~~---~~~~~~~~l~~l~l~~~~~~-----~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~ 496 (608)
T 3j16_B 429 TVRQLFFKK--IRG--QFL---NPQFQTDVVKPLRIDDIIDQ-----EVQHLSGGELQRVAIVLALGIPADIYLIDEPSA 496 (608)
T ss_dssp BHHHHHHHH--CSS--TTT---SHHHHHHTHHHHTSTTTSSS-----BSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred cHHHHHHHH--hhc--ccc---cHHHHHHHHHHcCChhhhcC-----ChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCC
Confidence 999987542 221 111 12456789999999887765 467999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHH-HCCcEEEEEecCCChHHHhhcCeEEEEcC--CeEEEEcChhhHHH
Q 007952 162 GLDSTTALRIVQMLQDIA-EAGKTVVTTIHQPSSRLFHKFDKLILLGK--GSLLYFGKASEAMA 222 (583)
Q Consensus 162 gLD~~~~~~i~~~l~~l~-~~g~tii~~~H~~~~~i~~~~D~v~~L~~--G~iv~~G~~~~~~~ 222 (583)
|||+.++..+++.|++++ +.|+|||++|||+. ++..+||+|++|++ |+++..|+|++++.
T Consensus 497 gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~-~~~~~aDrvivl~~~~g~~~~~g~p~~~~~ 559 (608)
T 3j16_B 497 YLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI-MATYLADKVIVFEGIPSKNAHARAPESLLT 559 (608)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEECEEETTTEEECCCCEEHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCCCeEEecCChHHHhh
Confidence 999999999999999986 45999999999964 57789999999986 89999999998865
No 53
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=6.7e-34 Score=328.59 Aligned_cols=188 Identities=22% Similarity=0.322 Sum_probs=157.0
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCC-CCCCCCC
Q 007952 4 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDD-VLFPHLT 82 (583)
Q Consensus 4 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~-~~~~~lT 82 (583)
.+++.+|+|+||++++||+++|+||||||||||+|+|+| |+| +|.+.... .+++|++|+. .+++.+|
T Consensus 445 yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag--------G~i--~g~~~~~~--~~~~~v~q~~~~~~~~lt 512 (986)
T 2iw3_A 445 YGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN--------GQV--DGFPTQEE--CRTVYVEHDIDGTHSDTS 512 (986)
T ss_dssp ETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH--------TCS--TTCCCTTT--SCEEETTCCCCCCCTTSB
T ss_pred ECCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC--------CCc--CCCccccc--eeEEEEcccccccccCCc
Confidence 345789999999999999999999999999999999995 222 34333222 2478999984 6788999
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 161 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPts 161 (583)
|.|++.+ .. . .. +++++++++.+|+. +..++ .+.+||||||||++||++|+.+|++|||||||+
T Consensus 513 v~e~l~~--~~--~-~~-----~~~v~~~L~~lgL~~~~~~~-----~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs 577 (986)
T 2iw3_A 513 VLDFVFE--SG--V-GT-----KEAIKDKLIEFGFTDEMIAM-----PISALSGGWKMKLALARAVLRNADILLLDEPTN 577 (986)
T ss_dssp HHHHHHT--TC--S-SC-----HHHHHHHHHHTTCCHHHHHS-----BGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTT
T ss_pred HHHHHHH--hh--c-CH-----HHHHHHHHHHcCCChhhhcC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEECCcc
Confidence 9999975 11 1 11 46688999999995 45554 356999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEE-EEcChhhHHH
Q 007952 162 GLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL-YFGKASEAMA 222 (583)
Q Consensus 162 gLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv-~~G~~~~~~~ 222 (583)
|||+.++..+.+.|++ .|+|||++||++. .+.+.||++++|++|+++ +.|++++...
T Consensus 578 ~LD~~~~~~l~~~L~~---~g~tvIivSHdl~-~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 578 HLDTVNVAWLVNYLNT---CGITSITISHDSV-FLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp TCCHHHHHHHHHHHHH---SCSEEEEECSCHH-HHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred CCCHHHHHHHHHHHHh---CCCEEEEEECCHH-HHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 9999999999999988 5899999999964 577899999999999997 7899988764
No 54
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=1.1e-34 Score=320.98 Aligned_cols=182 Identities=26% Similarity=0.369 Sum_probs=150.1
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEE---------EECCccCCc------cccccEEEEc
Q 007952 8 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSI---------TYNDHPYSK------SLKSKIGFVT 72 (583)
Q Consensus 8 ~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I---------~~~g~~~~~------~~~~~i~yv~ 72 (583)
.+|+|+| ++++||+++|+||||||||||+|+|+|... +++|++ .++|.++.. ..+..+++++
T Consensus 36 ~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~--p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 112 (538)
T 1yqt_A 36 FVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLI--PNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKP 112 (538)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSC--CCTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEEC
T ss_pred ccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhh
Confidence 4899999 999999999999999999999999999753 567885 356665421 1134588999
Q ss_pred cCCCCCCC---CCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHh
Q 007952 73 QDDVLFPH---LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIII 149 (583)
Q Consensus 73 Q~~~~~~~---lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~ 149 (583)
|+....+. .|+.|++... . ..++++++++.+||++..++ .+.+|||||||||+||++|+.
T Consensus 113 q~~~~~~~~~~~~v~e~~~~~---~---------~~~~~~~~l~~lgl~~~~~~-----~~~~LSgGekQRv~iAraL~~ 175 (538)
T 1yqt_A 113 QYVDLIPKAVKGKVIELLKKA---D---------ETGKLEEVVKALELENVLER-----EIQHLSGGELQRVAIAAALLR 175 (538)
T ss_dssp SCGGGSGGGCCSBHHHHHHHH---C---------SSSCHHHHHHHTTCTTTTTS-----BGGGCCHHHHHHHHHHHHHHS
T ss_pred hhhhhcchhhhccHHHHHhhh---h---------HHHHHHHHHHHcCCChhhhC-----ChhhCCHHHHHHHHHHHHHhc
Confidence 97544332 3899987531 0 12357889999999876665 467999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCe
Q 007952 150 NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 210 (583)
Q Consensus 150 ~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~ 210 (583)
+|++|+|||||++||+.++..+++.|++++++|+|||++||++. .+.++||+|++|++|.
T Consensus 176 ~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~-~~~~~~dri~vl~~~~ 235 (538)
T 1yqt_A 176 NATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLA-VLDYLSDIIHVVYGEP 235 (538)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEET
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEcCcc
Confidence 99999999999999999999999999999888999999999964 5778999999998653
No 55
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=1.2e-34 Score=324.09 Aligned_cols=182 Identities=26% Similarity=0.388 Sum_probs=150.0
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEE---------EECCccCCc------cccccEEEEc
Q 007952 8 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSI---------TYNDHPYSK------SLKSKIGFVT 72 (583)
Q Consensus 8 ~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I---------~~~g~~~~~------~~~~~i~yv~ 72 (583)
.+|+|+| ++++||+++|+||||||||||||+|+|.+. +++|++ .++|.++.. ..+..+++++
T Consensus 106 ~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~--p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~ 182 (607)
T 3bk7_A 106 FVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLI--PNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKP 182 (607)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSC--CCTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEEC
T ss_pred eeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCC--CCCCccccccchhhheeCCEehhhhhhhhhhhhcceEEee
Confidence 4899999 999999999999999999999999999763 567885 456665421 1234588999
Q ss_pred cCCCCCC---CCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHh
Q 007952 73 QDDVLFP---HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIII 149 (583)
Q Consensus 73 Q~~~~~~---~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~ 149 (583)
|+....+ ..||.|++... . ..++++++++.+||++..++. +.+|||||||||+||+||+.
T Consensus 183 q~~~~~~~~~~~tv~e~l~~~------~------~~~~~~~~L~~lgL~~~~~~~-----~~~LSGGekQRvaIAraL~~ 245 (607)
T 3bk7_A 183 QYVDLLPKAVKGKVRELLKKV------D------EVGKFEEVVKELELENVLDRE-----LHQLSGGELQRVAIAAALLR 245 (607)
T ss_dssp SCGGGGGGTCCSBHHHHHHHT------C------CSSCHHHHHHHTTCTTGGGSB-----GGGCCHHHHHHHHHHHHHHS
T ss_pred chhhhchhhccccHHHHhhhh------H------HHHHHHHHHHHcCCCchhCCC-----hhhCCHHHHHHHHHHHHHhc
Confidence 8743322 23999998631 0 123478899999998877654 57999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCe
Q 007952 150 NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 210 (583)
Q Consensus 150 ~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~ 210 (583)
+|++|+|||||+|||+.++..+++.|++++++|+|||++|||+. .+..+||+|++|+++.
T Consensus 246 ~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~-~~~~~adri~vl~~~~ 305 (607)
T 3bk7_A 246 KAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLA-VLDYLSDVIHVVYGEP 305 (607)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEESCT
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChH-HHHhhCCEEEEECCCc
Confidence 99999999999999999999999999999888999999999964 5778899999998653
No 56
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=2.1e-33 Score=319.35 Aligned_cols=196 Identities=27% Similarity=0.438 Sum_probs=149.7
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHh----------------------CCCCCCCcccEEEECCccCCccc
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLS----------------------GRLMEPTVGGSITYNDHPYSKSL 64 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~----------------------g~~~~~~~~G~I~~~g~~~~~~~ 64 (583)
+.+|+|||++|++||+++|+||||||||||+++|. |.. ...|.|.++|.++....
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~---~~~~~i~~~~~~~~~~~ 411 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLE---HLDKVIDIDQSPIGRTP 411 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGG---GCSEEEECCSSCSCSST
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhccccccccccccccc---ccCceeEeccccCCCCC
Confidence 45799999999999999999999999999998764 111 12467888887653110
Q ss_pred ---------------------------------------------cccEEEEccCCCCCC--------------------
Q 007952 65 ---------------------------------------------KSKIGFVTQDDVLFP-------------------- 79 (583)
Q Consensus 65 ---------------------------------------------~~~i~yv~Q~~~~~~-------------------- 79 (583)
.+..|+++|+..++|
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (670)
T 3ux8_A 412 RSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLE 491 (670)
T ss_dssp TCCHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHT
T ss_pred CcchhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhh
Confidence 011244444433322
Q ss_pred ------------CCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCccCcccChHHHHHHHHHHH
Q 007952 80 ------------HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC-QDTMIGGSFVRGVSGGERKRVCIGNE 146 (583)
Q Consensus 80 ------------~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~ig~~~~~~LSgGerqRv~ia~~ 146 (583)
.+||+||+.+... . ...+++.+.++.+||.+. .+ ..+.+|||||||||+||||
T Consensus 492 ~~~~~~~~~~~~~ltv~e~l~~~~~------~---~~~~~~~~~l~~~~l~~~~~~-----~~~~~LSgG~~qrv~iAra 557 (670)
T 3ux8_A 492 VTYKGKNIAEVLDMTVEDALDFFAS------I---PKIKRKLETLYDVGLGYMKLG-----QPATTLSGGEAQRVKLAAE 557 (670)
T ss_dssp CCBTTBCHHHHHTSBHHHHHHHTTT------C---HHHHHHHHHHHHTTCTTSBTT-----CCGGGCCHHHHHHHHHHHH
T ss_pred eeecCCCHHHHhhCCHHHHHHHHHH------h---hhHHHHHHHHHHcCCchhhcc-----CCchhCCHHHHHHHHHHHH
Confidence 4799999987431 1 123456678888998642 23 3567999999999999999
Q ss_pred HHhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEE------cCCeEEEEcCh
Q 007952 147 IIINP---SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL------GKGSLLYFGKA 217 (583)
Q Consensus 147 L~~~p---~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~ 217 (583)
|+.+| ++|+|||||+|||+.++..+++.|++++++|+|||++|||+. . .+.||+|++| ++|++++.|++
T Consensus 558 L~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~-~-~~~~d~i~~l~~~~g~~~G~i~~~g~~ 635 (670)
T 3ux8_A 558 LHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD-V-IKTADYIIDLGPEGGDRGGQIVAVGTP 635 (670)
T ss_dssp HHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-H-HTTCSEEEEEESSSGGGCCEEEEEECH
T ss_pred HhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-H-HHhCCEEEEecCCcCCCCCEEEEecCH
Confidence 99987 599999999999999999999999999988999999999975 3 4679999999 89999999999
Q ss_pred hhHH
Q 007952 218 SEAM 221 (583)
Q Consensus 218 ~~~~ 221 (583)
+++.
T Consensus 636 ~~~~ 639 (670)
T 3ux8_A 636 EEVA 639 (670)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9874
No 57
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.98 E-value=5.8e-33 Score=320.79 Aligned_cols=192 Identities=22% Similarity=0.379 Sum_probs=150.3
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCC----CCCCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVL----FPHLT 82 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~----~~~lT 82 (583)
+++|+|+|+++++||+++|+||||||||||+|+|+|... +.+|+|.++|. ..++|++|+... ....|
T Consensus 686 ~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~--P~sG~I~~~~~-------~~I~yv~Q~~~~~l~~~~~~t 756 (986)
T 2iw3_A 686 KPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELL--PTSGEVYTHEN-------CRIAYIKQHAFAHIESHLDKT 756 (986)
T ss_dssp SCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSC--CSEEEEEECTT-------CCEEEECHHHHHHGGGCTTSC
T ss_pred ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEEcCc-------cceEeeccchhhhhhcccccC
Confidence 679999999999999999999999999999999999653 67899999863 248999997521 23468
Q ss_pred HHHHHHHHHHcC------------CC----------------------------------------------------CC
Q 007952 83 VKETLTYAALLR------------LP----------------------------------------------------NT 98 (583)
Q Consensus 83 v~e~l~~~~~~~------------~~----------------------------------------------------~~ 98 (583)
++|++.+..... .. ..
T Consensus 757 ~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~~~sv~ENi~l~~~~~~~ 836 (986)
T 2iw3_A 757 PSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVP 836 (986)
T ss_dssp HHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEESTTSTTCEEEE
T ss_pred HHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhhhhhhhhhhhcccccccc
Confidence 888876532100 00 00
Q ss_pred C--------C--------------------------HHHHHHHHHHHHHHcCCCcc--ccccccCccCcccChHHHHHHH
Q 007952 99 L--------T--------------------------KQQKEKRAIDVINELGLERC--QDTMIGGSFVRGVSGGERKRVC 142 (583)
Q Consensus 99 ~--------~--------------------------~~~~~~~v~~~l~~lgL~~~--~~~~ig~~~~~~LSgGerqRv~ 142 (583)
. + +....++++++++.+||.+. .+. .+++|||||||||+
T Consensus 837 lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~-----~~~~LSGGQkQRVa 911 (986)
T 2iw3_A 837 MMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHS-----RIRGLSGGQKVKLV 911 (986)
T ss_dssp CCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHS-----CGGGCCHHHHHHHH
T ss_pred cchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcCC-----CccccCHHHHHHHH
Confidence 0 0 00013567889999999742 343 35799999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcC
Q 007952 143 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 216 (583)
Q Consensus 143 ia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 216 (583)
||++|+.+|++|+|||||+|||+.+...+.+.|+++ |.|||++||++. .+.++||++++|++|+++..|+
T Consensus 912 LArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~---g~tVIiISHD~e-~v~~l~DrVivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 912 LAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF---EGGVIIITHSAE-FTKNLTEEVWAVKDGRMTPSGH 981 (986)
T ss_dssp HHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC---SSEEEEECSCHH-HHTTTCCEEECCBTTBCCC---
T ss_pred HHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh---CCEEEEEECCHH-HHHHhCCEEEEEECCEEEEeCC
Confidence 999999999999999999999999999999988765 679999999964 5678999999999999988774
No 58
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.97 E-value=2.5e-32 Score=301.47 Aligned_cols=174 Identities=21% Similarity=0.280 Sum_probs=138.0
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEE-----------EECCccCCcc------ccccEEEEccC----C
Q 007952 17 VNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSI-----------TYNDHPYSKS------LKSKIGFVTQD----D 75 (583)
Q Consensus 17 i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I-----------~~~g~~~~~~------~~~~i~yv~Q~----~ 75 (583)
.++||++||+||||||||||+|+|+|.+. +++|+| .++|+++... ....+....|. +
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~--p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGEII--PNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYAS 99 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTSSC--CCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGG
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhh
Confidence 45999999999999999999999999763 568988 5777665211 11224444443 3
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 76 VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 76 ~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
.++. .||+|++... . ..++++++++.+|+.+..++. +.+|||||||||+||+||+.+|++|+
T Consensus 100 ~~~~-~~v~~~l~~~---~---------~~~~~~~~l~~l~l~~~~~~~-----~~~LSgGe~Qrv~iA~aL~~~p~ill 161 (538)
T 3ozx_A 100 KFLK-GTVNEILTKI---D---------ERGKKDEVKELLNMTNLWNKD-----ANILSGGGLQRLLVAASLLREADVYI 161 (538)
T ss_dssp TTCC-SBHHHHHHHH---C---------CSSCHHHHHHHTTCGGGTTSB-----GGGCCHHHHHHHHHHHHHHSCCSEEE
T ss_pred hhcc-CcHHHHhhcc---h---------hHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 3333 4888866421 0 123477899999998877654 57999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEE
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 212 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv 212 (583)
|||||++||+.++..+.+.|+++++ |+|||+++|++. ++..+||+|++|++|..+
T Consensus 162 lDEPts~LD~~~~~~l~~~l~~l~~-g~tii~vsHdl~-~~~~~~d~i~vl~~~~~~ 216 (538)
T 3ozx_A 162 FDQPSSYLDVRERMNMAKAIRELLK-NKYVIVVDHDLI-VLDYLTDLIHIIYGESSV 216 (538)
T ss_dssp EESTTTTCCHHHHHHHHHHHHHHCT-TSEEEEECSCHH-HHHHHCSEEEEEEEETTT
T ss_pred EECCcccCCHHHHHHHHHHHHHHhC-CCEEEEEEeChH-HHHhhCCEEEEecCCccc
Confidence 9999999999999999999999976 999999999964 688899999999876543
No 59
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.97 E-value=1.7e-30 Score=300.05 Aligned_cols=200 Identities=27% Similarity=0.475 Sum_probs=154.3
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHH---------HHHhCCCCCC----Ccc------cEEEECCccCCcc----
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLL---------NLLSGRLMEP----TVG------GSITYNDHPYSKS---- 63 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl---------~~l~g~~~~~----~~~------G~I~~~g~~~~~~---- 63 (583)
+..|+|||++|++|++++|+||||||||||+ +.+.+..... ..+ +.+.+++.++...
T Consensus 597 ~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~ 676 (916)
T 3pih_A 597 HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSN 676 (916)
T ss_dssp STTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCC
T ss_pred cccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeecccccccccccc
Confidence 3569999999999999999999999999997 4555432110 112 2355555443210
Q ss_pred -----------------------------------------ccccEEEEccCCCCCC-----------------------
Q 007952 64 -----------------------------------------LKSKIGFVTQDDVLFP----------------------- 79 (583)
Q Consensus 64 -----------------------------------------~~~~i~yv~Q~~~~~~----------------------- 79 (583)
..+..|++.|+..++|
T Consensus 677 ~at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~ 756 (916)
T 3pih_A 677 PATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITY 756 (916)
T ss_dssp HHHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCB
T ss_pred ccchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhh
Confidence 0123578888776665
Q ss_pred ---------CCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhC
Q 007952 80 ---------HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIIN 150 (583)
Q Consensus 80 ---------~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~ 150 (583)
.+||.|++.|... . ...+++.++|+.+||.... + ++.+.+|||||||||.||++|+.+
T Consensus 757 ~g~~i~~vl~~tv~eal~f~~~------~---~~~~~~~~~L~~vGL~~~~---l-gq~~~~LSGGErQRV~LAraL~~~ 823 (916)
T 3pih_A 757 KGKNISDILDMTVDEALEFFKN------I---PSIKRTLQVLHDVGLGYVK---L-GQPATTLSGGEAQRIKLASELRKR 823 (916)
T ss_dssp TTBCHHHHHSSBHHHHHHHTTT------C---HHHHHHHHHHHHTTGGGSB---T-TCCSTTCCHHHHHHHHHHHHHTSC
T ss_pred ccCCHHHHhhCCHHHHHHHHhc------c---hhHHHHHHHHHHcCCchhh---c-cCCccCCCHHHHHHHHHHHHHhhC
Confidence 3688888887421 1 1235677899999996422 1 235679999999999999999987
Q ss_pred C---CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEE------cCCeEEEEcChhhHH
Q 007952 151 P---SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL------GKGSLLYFGKASEAM 221 (583)
Q Consensus 151 p---~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~ 221 (583)
| ++|+|||||+|||+.+...+++.|++++++|.|||+++|++. .+ +.||+|++| ++|++++.|+++++.
T Consensus 824 p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~-~i-~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~ 901 (916)
T 3pih_A 824 DTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLD-VI-KNADHIIDLGPEGGKEGGYIVATGTPEEIA 901 (916)
T ss_dssp CCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HH-TTCSEEEEEESSSGGGCCEEEEEESHHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-HhCCEEEEecCCCCCCCCEEEEEcCHHHHH
Confidence 5 799999999999999999999999999988999999999974 34 669999999 899999999999985
No 60
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.7e-31 Score=298.18 Aligned_cols=187 Identities=25% Similarity=0.308 Sum_probs=143.0
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEE-----------EECCccCCc----ccccc--EEE
Q 007952 8 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSI-----------TYNDHPYSK----SLKSK--IGF 70 (583)
Q Consensus 8 ~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I-----------~~~g~~~~~----~~~~~--i~y 70 (583)
..|++++ .+++||+++|+||||||||||||+|+|.+. +++|+| .+.|.++.. ...+. ..+
T Consensus 92 ~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~--P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 168 (608)
T 3j16_B 92 FKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQK--PNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAII 168 (608)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSC--CCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEE
T ss_pred eeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCC--CCCceEecccchhhhhheecChhhhhhhhHHHHHhhhhhh
Confidence 3567766 689999999999999999999999999763 568987 233333211 01111 233
Q ss_pred EccCCCC------CCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHH
Q 007952 71 VTQDDVL------FPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 144 (583)
Q Consensus 71 v~Q~~~~------~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia 144 (583)
.+|.... -+..++.+++.... . +..++++++++.+||.+..++. +.+|||||||||+||
T Consensus 169 ~~~~~~~~~~~~~~~~~~v~~~l~~~~------~----~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGe~Qrv~iA 233 (608)
T 3j16_B 169 KPQYVDNIPRAIKGPVQKVGELLKLRM------E----KSPEDVKRYIKILQLENVLKRD-----IEKLSGGELQRFAIG 233 (608)
T ss_dssp ECCCTTTHHHHCSSSSSHHHHHHHHHC------C----SCHHHHHHHHHHHTCTGGGGSC-----TTTCCHHHHHHHHHH
T ss_pred chhhhhhhhhhhcchhhHHHHHHhhhh------h----hHHHHHHHHHHHcCCcchhCCC-----hHHCCHHHHHHHHHH
Confidence 4443211 12235666654321 0 1135688999999998877754 579999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEE
Q 007952 145 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 213 (583)
Q Consensus 145 ~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~ 213 (583)
+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. ++..++|+|++|++|..++
T Consensus 234 raL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~-~~~~~~drv~vl~~~~~~~ 301 (608)
T 3j16_B 234 MSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLS-VLDYLSDFVCIIYGVPSVY 301 (608)
T ss_dssp HHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHH-HHHHHCSEEEEEESCTTTE
T ss_pred HHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcccc
Confidence 9999999999999999999999999999999999888999999999964 5788999999999876555
No 61
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.97 E-value=9.2e-31 Score=300.24 Aligned_cols=198 Identities=27% Similarity=0.432 Sum_probs=153.6
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHh-CCC---------CCCC---ccc------EEEECCccCCccc----
Q 007952 8 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLS-GRL---------MEPT---VGG------SITYNDHPYSKSL---- 64 (583)
Q Consensus 8 ~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~-g~~---------~~~~---~~G------~I~~~g~~~~~~~---- 64 (583)
..|+|||++|++||++||+|+||||||||++.|. |.+ ..+. ..| .|.++|.++.+..
T Consensus 638 ~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I~idq~pig~~~rs~p 717 (972)
T 2r6f_A 638 HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNP 717 (972)
T ss_dssp SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEEEECSSCSCSSTTCCH
T ss_pred cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceEEEEcCcccccCccccc
Confidence 4699999999999999999999999999999853 110 1110 123 4888888763210
Q ss_pred -------------------cccEEEEccCCCCC----------------------C------------------------
Q 007952 65 -------------------KSKIGFVTQDDVLF----------------------P------------------------ 79 (583)
Q Consensus 65 -------------------~~~i~yv~Q~~~~~----------------------~------------------------ 79 (583)
.+.+||++|...+. +
T Consensus 718 aty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~c~G~r~~~e~l~v~~~ 797 (972)
T 2r6f_A 718 ATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYK 797 (972)
T ss_dssp HHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTTTTTCCBCTTGGGCCBT
T ss_pred hhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccccccccccccccchhhhhhcc
Confidence 13357777753221 1
Q ss_pred --------CCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCcccChHHHHHHHHHHHHHhC
Q 007952 80 --------HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGERKRVCIGNEIIIN 150 (583)
Q Consensus 80 --------~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~ 150 (583)
.+||.|++.|... . . ..+++.++++.+||.. ..+. .+.+|||||||||+||++|+.+
T Consensus 798 g~sI~dvl~ltv~e~l~~~~~------~-~--~~~~~~~~L~~~gL~~~~l~~-----~~~~LSGGekQRv~LAraL~~~ 863 (972)
T 2r6f_A 798 GKNIAEVLDMTVEDALDFFAS------I-P--KIKRKLETLYDVGLGYMKLGQ-----PATTLSGGEAQRVKLAAELHRR 863 (972)
T ss_dssp TBCHHHHHTSBHHHHHHHTCS------C-H--HHHHHHHHHHHTTCSSSBTTC-----CGGGCCHHHHHHHHHHHHHSSC
T ss_pred CCCHHHhhhcCHHHHHHHHhc------c-h--hHHHHHHHHHHcCCCcccccC-----chhhCCHHHHHHHHHHHHHhcC
Confidence 4678888876321 1 1 1234578999999976 3443 4679999999999999999986
Q ss_pred C---CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEE------cCCeEEEEcChhhHH
Q 007952 151 P---SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL------GKGSLLYFGKASEAM 221 (583)
Q Consensus 151 p---~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~ 221 (583)
| ++|+|||||+|||+.++..+++.|++++++|.|||+++|++. .+ +.||+|++| ++|++++.|+++++.
T Consensus 864 p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~-~i-~~aDrIivL~p~gG~~~G~Iv~~g~~~el~ 941 (972)
T 2r6f_A 864 SNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD-VI-KTADYIIDLGPEGGDRGGQIVAVGTPEEVA 941 (972)
T ss_dssp CCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HH-TTCSEEEEECSSSTTSCCSEEEEESHHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HH-HhCCEEEEEcCCCCCCCCEEEEecCHHHHH
Confidence 5 999999999999999999999999999988999999999964 34 689999999 689999999999875
No 62
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.97 E-value=2.8e-30 Score=295.90 Aligned_cols=198 Identities=27% Similarity=0.444 Sum_probs=150.2
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHH-HhCCC-------CC----------------CCccc-------EEEEC
Q 007952 8 DILNGITGSVNPGEVLALMGPSGSGKTTLLNL-LSGRL-------ME----------------PTVGG-------SITYN 56 (583)
Q Consensus 8 ~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~-l~g~~-------~~----------------~~~~G-------~I~~~ 56 (583)
..|+|||++|++||++||+|+||||||||++. |+|.+ .. .+.+| .|.++
T Consensus 511 ~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~i~vd 590 (842)
T 2vf7_A 511 NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGSARLGGDLAQITRLVRVD 590 (842)
T ss_dssp TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------CCCEEEESGGGCCEEEEEC
T ss_pred cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccccccccCcccccceEEEEC
Confidence 46999999999999999999999999999996 66422 10 11356 78999
Q ss_pred CccCCcccc-----------------------ccEEEEcc----------------------CCCCCC------------
Q 007952 57 DHPYSKSLK-----------------------SKIGFVTQ----------------------DDVLFP------------ 79 (583)
Q Consensus 57 g~~~~~~~~-----------------------~~i~yv~Q----------------------~~~~~~------------ 79 (583)
|.++....+ +..||.++ +-.+++
T Consensus 591 q~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~~~~f~~~v~~~c~~c~G~ 670 (842)
T 2vf7_A 591 QKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMVELLFLPSVYAPCPVCHGT 670 (842)
T ss_dssp SSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEETTCSSSCEEEECTTTTTC
T ss_pred CeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccchhhhcCCccceecccccCc
Confidence 887642111 11122222 111222
Q ss_pred --------------------CCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCccCcccChHHH
Q 007952 80 --------------------HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC-QDTMIGGSFVRGVSGGER 138 (583)
Q Consensus 80 --------------------~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~ig~~~~~~LSgGer 138 (583)
.+|+.|++.|.. . . ...+++.++++.+||... .+ ..+.+||||||
T Consensus 671 r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~------~-~--~~~~~~~~~L~~~gL~~~~l~-----~~~~~LSGGek 736 (842)
T 2vf7_A 671 RYNAETLEVEYRGKNIADVLALTVDEAHDFFA------D-E--SAIFRALDTLREVGLGYLRLG-----QPATELSGGEA 736 (842)
T ss_dssp CBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTT------T-S--HHHHHHHHHHHHTTCTTSBTT-----CCGGGCCHHHH
T ss_pred ccchhhHhhhhcCCCHHHHHhccHHHHHHHhh------c-c--hHHHHHHHHHHHcCCCccccc-----CCcccCCHHHH
Confidence 245555554421 1 1 123467899999999763 23 34679999999
Q ss_pred HHHHHHHHHHhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEE------cCC
Q 007952 139 KRVCIGNEIIIN---PSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL------GKG 209 (583)
Q Consensus 139 qRv~ia~~L~~~---p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L------~~G 209 (583)
|||.||++|+.+ |++|+|||||+|||+.+...+++.|++++++|.|||+++|++. .+ +.||+|++| ++|
T Consensus 737 QRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~-~i-~~aDrii~L~p~~g~~~G 814 (842)
T 2vf7_A 737 QRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQ-VV-AASDWVLDIGPGAGEDGG 814 (842)
T ss_dssp HHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HH-TTCSEEEEECSSSGGGCC
T ss_pred HHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HH-HhCCEEEEECCCCCCCCC
Confidence 999999999996 7999999999999999999999999999988999999999964 45 789999999 799
Q ss_pred eEEEEcChhhHH
Q 007952 210 SLLYFGKASEAM 221 (583)
Q Consensus 210 ~iv~~G~~~~~~ 221 (583)
++++.|+++++.
T Consensus 815 ~Iv~~g~~~el~ 826 (842)
T 2vf7_A 815 RLVAQGTPAEVA 826 (842)
T ss_dssp SEEEEECHHHHT
T ss_pred EEEEEcCHHHHH
Confidence 999999998864
No 63
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.97 E-value=3.5e-30 Score=296.49 Aligned_cols=199 Identities=25% Similarity=0.412 Sum_probs=151.1
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHh-C----CCCCC-Cccc-------------EEEECCccCCccc----
Q 007952 8 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLS-G----RLMEP-TVGG-------------SITYNDHPYSKSL---- 64 (583)
Q Consensus 8 ~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~-g----~~~~~-~~~G-------------~I~~~g~~~~~~~---- 64 (583)
..|+|||++|++||++||+|+||||||||+++|. | .+... +..| .|.+++.++.+..
T Consensus 656 ~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~i~idq~pig~~~rs~p 735 (993)
T 2ygr_A 656 HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLDKLVRIDQSPIGRTPRSNP 735 (993)
T ss_dssp TTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTTCSEEECCCCSCSCSSTTCCH
T ss_pred ccccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccccceEEEecCcccccCcccch
Confidence 4699999999999999999999999999999853 2 11110 1122 3566666652110
Q ss_pred -------------------cccEEEEccCCCC----------------------CC------------------------
Q 007952 65 -------------------KSKIGFVTQDDVL----------------------FP------------------------ 79 (583)
Q Consensus 65 -------------------~~~i~yv~Q~~~~----------------------~~------------------------ 79 (583)
.+..||++|...+ ++
T Consensus 736 aty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~~ce~c~G~r~~~e~l~v~~~ 815 (993)
T 2ygr_A 736 ATYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPCEVCQGARYNRETLEVHYK 815 (993)
T ss_dssp HHHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEEECTTTTTCSBCGGGGGCCBT
T ss_pred hhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccceeeehhccccccchhhhhhhcc
Confidence 1235777775322 11
Q ss_pred --------CCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCcccChHHHHHHHHHHHHHhC
Q 007952 80 --------HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGERKRVCIGNEIIIN 150 (583)
Q Consensus 80 --------~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~ 150 (583)
.+||.|++.|... . . ..+++.++++.+||.. ..+. .+.+|||||||||+||++|+.+
T Consensus 816 g~si~dvl~ltv~e~l~~~~~------~-~--~~~~~~~~L~~lgL~~~~l~~-----~~~~LSGGekQRv~LAraL~~~ 881 (993)
T 2ygr_A 816 GKTVSEVLDMSIEEAAEFFEP------I-A--GVHRYLRTLVDVGLGYVRLGQ-----PAPTLSGGEAQRVKLASELQKR 881 (993)
T ss_dssp TBCHHHHHSSBHHHHHHHSTT------C-H--HHHHHHHHHHHTTGGGSBTTC-----CGGGSCHHHHHHHHHHHHHSSC
T ss_pred CCCHHHHhhccHHHHHHHhhc------c-h--HHHHHHHHHHHcCCCcccccC-----ccccCCHHHHHHHHHHHHHHhC
Confidence 3577888776321 1 1 1234578999999975 3333 4679999999999999999986
Q ss_pred C---CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEE------cCCeEEEEcChhhHH
Q 007952 151 P---SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL------GKGSLLYFGKASEAM 221 (583)
Q Consensus 151 p---~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~ 221 (583)
| ++|+|||||+|||+.+...+++.|++++++|.|||+++|++. .+ +.||+|++| ++|++++.|+++++.
T Consensus 882 p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~-~i-~~aDrIivL~p~gg~~~G~Iv~~G~~~el~ 959 (993)
T 2ygr_A 882 STGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLD-VI-KTSDWIIDLGPEGGAGGGTVVAQGTPEDVA 959 (993)
T ss_dssp CCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HH-TTCSEEEEEESSSTTSCSEEEEEECHHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HH-HhCCEEEEECCCcCCCCCEEEEecCHHHHH
Confidence 5 999999999999999999999999999988999999999964 34 689999999 689999999999875
Q ss_pred H
Q 007952 222 A 222 (583)
Q Consensus 222 ~ 222 (583)
+
T Consensus 960 ~ 960 (993)
T 2ygr_A 960 A 960 (993)
T ss_dssp H
T ss_pred h
Confidence 4
No 64
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.96 E-value=5.7e-29 Score=266.92 Aligned_cols=204 Identities=16% Similarity=0.218 Sum_probs=147.8
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC------------------------------------CCcc
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME------------------------------------PTVG 50 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~------------------------------------~~~~ 50 (583)
..+++++|+++++| +++|+|||||||||||++|.+.... .+.+
T Consensus 48 f~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~ 126 (415)
T 4aby_A 48 LATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGR 126 (415)
T ss_dssp ETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSC
T ss_pred ccceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCc
Confidence 45799999999999 9999999999999999999764421 1236
Q ss_pred cEEEECCccCCc----cc-cccEEEEccCCCCCCCCCHHHHHHHHHHcC-----------------------CCCCC---
Q 007952 51 GSITYNDHPYSK----SL-KSKIGFVTQDDVLFPHLTVKETLTYAALLR-----------------------LPNTL--- 99 (583)
Q Consensus 51 G~I~~~g~~~~~----~~-~~~i~yv~Q~~~~~~~lTv~e~l~~~~~~~-----------------------~~~~~--- 99 (583)
|++.+||++++. .. +..+++++|++.++.. +..+...|.-... .....
T Consensus 127 ~~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~ 205 (415)
T 4aby_A 127 GAARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSK 205 (415)
T ss_dssp EEEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred eEEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 889999998763 22 3448999999876543 5554444321110 00000
Q ss_pred -C------------------------------HHHHHHHHHHHHHHcCCCcccc----------------c---cccC--
Q 007952 100 -T------------------------------KQQKEKRAIDVINELGLERCQD----------------T---MIGG-- 127 (583)
Q Consensus 100 -~------------------------------~~~~~~~v~~~l~~lgL~~~~~----------------~---~ig~-- 127 (583)
. .+...+.+.+.++.+++.+..- . .+..
T Consensus 206 ~~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 285 (415)
T 4aby_A 206 HPTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANP 285 (415)
T ss_dssp ----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSS
T ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCC
Confidence 0 0011234556667776653110 0 0100
Q ss_pred ----ccCcc-cChHHHHHHHHHHHHHhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhc
Q 007952 128 ----SFVRG-VSGGERKRVCIGNEIIINP--SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKF 200 (583)
Q Consensus 128 ----~~~~~-LSgGerqRv~ia~~L~~~p--~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~ 200 (583)
..++. +|||||||++||++|+.+| ++|+|||||+|||+.++..+.+.|++++ +|+|||++||++ ++.+.|
T Consensus 286 ~~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~--~~~~~~ 362 (415)
T 4aby_A 286 GEELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLA--QIAARA 362 (415)
T ss_dssp SCCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCH--HHHTTC
T ss_pred CCcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcH--HHHhhc
Confidence 12223 6999999999999999999 9999999999999999999999999998 599999999997 356889
Q ss_pred CeEEEE----cCCeEEEEc
Q 007952 201 DKLILL----GKGSLLYFG 215 (583)
Q Consensus 201 D~v~~L----~~G~iv~~G 215 (583)
|++++| ++|+++...
T Consensus 363 d~i~~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 363 HHHYKVEKQVEDGRTVSHV 381 (415)
T ss_dssp SEEEEEEEEEETTEEEEEE
T ss_pred CeEEEEEEeccCCceEEEE
Confidence 999999 999987654
No 65
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1e-31 Score=290.93 Aligned_cols=186 Identities=14% Similarity=0.108 Sum_probs=148.0
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCccc-E-EEECCccCCccccccEEEEccCCC---CCCCCCHH
Q 007952 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGG-S-ITYNDHPYSKSLKSKIGFVTQDDV---LFPHLTVK 84 (583)
Q Consensus 10 L~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G-~-I~~~g~~~~~~~~~~i~yv~Q~~~---~~~~lTv~ 84 (583)
++++|+++++|++++|+||||||||||+|+|+|... +.+| + |.+||. .++.++|++|+.. +.+.+||+
T Consensus 128 y~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~--p~~G~~pI~vdg~-----~~~~i~~vpq~~~l~~~~~~~tv~ 200 (460)
T 2npi_A 128 LEKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYAL--KFNAYQPLYINLD-----PQQPIFTVPGCISATPISDILDAQ 200 (460)
T ss_dssp HHHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTH--HHHCCCCEEEECC-----TTSCSSSCSSCCEEEECCSCCCTT
T ss_pred hhcCceEeCCCCEEEEECCCCCCHHHHHHHHhCccc--ccCCceeEEEcCC-----ccCCeeeeccchhhcccccccchh
Confidence 357899999999999999999999999999999653 5789 9 999983 2567999999984 45567999
Q ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHH--HHhCCCE----EEEeC
Q 007952 85 ETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNE--IIINPSL----LFLDE 158 (583)
Q Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~--L~~~p~i----llLDE 158 (583)
||+ |+....... . ..+++.++++.+|+++..+ +.+|||||||||+||++ |+.+|++ |+|||
T Consensus 201 eni-~~~~~~~~~--~---~~~~~~~ll~~~gl~~~~~-------~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDE 267 (460)
T 2npi_A 201 LPT-WGQSLTSGA--T---LLHNKQPMVKNFGLERINE-------NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDT 267 (460)
T ss_dssp CTT-CSCBCBSSC--C---SSCCBCCEECCCCSSSGGG-------CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEEC
T ss_pred hhh-cccccccCc--c---hHHHHHHHHHHhCCCcccc-------hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeC
Confidence 988 643211110 0 1233556778888876554 46899999999999999 9999999 99999
Q ss_pred -CCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCC--h---HHHhhcCe-----EEEEc-CCeEEEEcChhhH
Q 007952 159 -PTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPS--S---RLFHKFDK-----LILLG-KGSLLYFGKASEA 220 (583)
Q Consensus 159 -PtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~--~---~i~~~~D~-----v~~L~-~G~iv~~G~~~~~ 220 (583)
||++||+. ...+.+.+++ .|+|+|+++|+.. . ++.+++|+ |++|+ +|+++ .|++++.
T Consensus 268 pPts~LD~~-~~~l~~l~~~---~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~ 336 (460)
T 2npi_A 268 PSISQLDEN-LAELHHIIEK---LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYK 336 (460)
T ss_dssp CCGGGSCSS-CHHHHHHHHH---TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHH
T ss_pred CcccccChh-HHHHHHHHHH---hCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHH
Confidence 99999999 5555554443 3789999999976 1 45578999 99999 99999 9998765
No 66
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.93 E-value=9.2e-26 Score=238.22 Aligned_cols=84 Identities=26% Similarity=0.425 Sum_probs=77.4
Q ss_pred ccCcccChHHHHHHHHHHHHH------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcC
Q 007952 128 SFVRGVSGGERKRVCIGNEII------INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFD 201 (583)
Q Consensus 128 ~~~~~LSgGerqRv~ia~~L~------~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D 201 (583)
..+.+||||||||++||++|+ .+|++|+|||||+|||+.++..+++.|++++++|+|||++||++. ..+.||
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~--~~~~~d 352 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDRE--FSEAFD 352 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHH--HHTTCS
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchH--HHHhCC
Confidence 457799999999999999999 699999999999999999999999999999888999999999974 367899
Q ss_pred eEEEEcCCeEEE
Q 007952 202 KLILLGKGSLLY 213 (583)
Q Consensus 202 ~v~~L~~G~iv~ 213 (583)
++++|++|+++.
T Consensus 353 ~~~~l~~G~i~~ 364 (365)
T 3qf7_A 353 RKLRITGGVVVN 364 (365)
T ss_dssp CEEEEETTEEC-
T ss_pred EEEEEECCEEEe
Confidence 999999999874
No 67
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.93 E-value=1.4e-28 Score=239.67 Aligned_cols=142 Identities=19% Similarity=0.272 Sum_probs=102.5
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCC---ccccccEEEEccCCCCCCC
Q 007952 4 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---KSLKSKIGFVTQDDVLFPH 80 (583)
Q Consensus 4 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~---~~~~~~i~yv~Q~~~~~~~ 80 (583)
.+++.+|+|+ ++||+++|+||||||||||+|+|+|. . +++|+|.. .++. ...++.+||++|++
T Consensus 10 ~g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~--p~~G~I~~--~~~~~~~~~~~~~ig~v~q~~----- 75 (208)
T 3b85_A 10 LGQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-A--LQSKQVSR--IILTRPAVEAGEKLGFLPGTL----- 75 (208)
T ss_dssp HHHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-H--HHTTSCSE--EEEEECSCCTTCCCCSSCC-------
T ss_pred HhHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-C--CcCCeeee--EEecCCchhhhcceEEecCCH-----
Confidence 4567799996 89999999999999999999999996 3 56898842 2111 23467799999976
Q ss_pred CCHHHHH-HHHH----HcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 81 LTVKETL-TYAA----LLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 81 lTv~e~l-~~~~----~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
+||+ .+.. .... ... .++++++++. |+ |||||++|||+|+.+|++|+
T Consensus 76 ---~enl~~~~~~~~~~~~~--~~~----~~~~~~~l~~-gl------------------Gq~qrv~lAraL~~~p~lll 127 (208)
T 3b85_A 76 ---NEKIDPYLRPLHDALRD--MVE----PEVIPKLMEA-GI------------------VEVAPLAYMRGRTLNDAFVI 127 (208)
T ss_dssp -------CTTTHHHHHHHTT--TSC----TTHHHHHHHT-TS------------------EEEEEGGGGTTCCBCSEEEE
T ss_pred ---HHHHHHHHHHHHHHHHH--hcc----HHHHHHHHHh-CC------------------chHHHHHHHHHHhcCCCEEE
Confidence 4444 2210 1110 000 1234555543 22 99999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCC
Q 007952 156 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPS 193 (583)
Q Consensus 156 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~ 193 (583)
|||||+| ++..+.+.|+++ ++|+||| +|||+.
T Consensus 128 LDEPts~----~~~~l~~~l~~l-~~g~tii-vtHd~~ 159 (208)
T 3b85_A 128 LDEAQNT----TPAQMKMFLTRL-GFGSKMV-VTGDIT 159 (208)
T ss_dssp ECSGGGC----CHHHHHHHHTTB-CTTCEEE-EEEC--
T ss_pred EeCCccc----cHHHHHHHHHHh-cCCCEEE-EECCHH
Confidence 9999999 899999999998 6689999 999964
No 68
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.92 E-value=2.5e-25 Score=231.12 Aligned_cols=90 Identities=20% Similarity=0.243 Sum_probs=74.5
Q ss_pred cCcccChHHHHHHHHHHHHH----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeE-
Q 007952 129 FVRGVSGGERKRVCIGNEII----INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKL- 203 (583)
Q Consensus 129 ~~~~LSgGerqRv~ia~~L~----~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v- 203 (583)
.+..||||||||++||++|+ .+|++++|||||++||+..+..+.+.|++++ +|+|||++||++. +.+.||++
T Consensus 216 ~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~~--~~~~~d~~~ 292 (322)
T 1e69_A 216 KLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNKI--VMEAADLLH 292 (322)
T ss_dssp BGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCTT--GGGGCSEEE
T ss_pred chhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCHH--HHhhCceEE
Confidence 45799999999999999997 5789999999999999999999999999985 4899999999953 57889987
Q ss_pred -EEEcCCe-EEEEcChhhHH
Q 007952 204 -ILLGKGS-LLYFGKASEAM 221 (583)
Q Consensus 204 -~~L~~G~-iv~~G~~~~~~ 221 (583)
++|.+|+ .+.....++..
T Consensus 293 ~v~~~~g~s~~~~~~~~~~~ 312 (322)
T 1e69_A 293 GVTMVNGVSAIVPVEVEKIL 312 (322)
T ss_dssp EEEESSSCEEEEECCC----
T ss_pred EEEEeCCEEEEEEEEcchhh
Confidence 7888874 45555555543
No 69
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.91 E-value=6.2e-26 Score=214.09 Aligned_cols=143 Identities=13% Similarity=0.150 Sum_probs=100.9
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCC-CCCCCHHHHHHHH
Q 007952 12 GITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVL-FPHLTVKETLTYA 90 (583)
Q Consensus 12 ~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~-~~~lTv~e~l~~~ 90 (583)
|+|+++++||+++|+||||||||||+|++.+ |...+++.. ..|+++|++.- ...-++.+.+.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~--------~~~~~~~d~-------~~g~~~~~~~~~~~~~~~~~~~~-- 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK--------PTEVISSDF-------CRGLMSDDENDQTVTGAAFDVLH-- 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC--------GGGEEEHHH-------HHHHHCSSTTCGGGHHHHHHHHH--
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc--------CCeEEccHH-------HHHHhcCcccchhhHHHHHHHHH--
Confidence 6899999999999999999999999999664 111122111 12566776421 00001111111
Q ss_pred HHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHH----
Q 007952 91 ALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDST---- 166 (583)
Q Consensus 91 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~---- 166 (583)
..... ....|.....+. ....|||||||++||++++.+|++++|||||++||+.
T Consensus 64 ---------------~~~~~-~~~~g~~~~~~~------~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R 121 (171)
T 4gp7_A 64 ---------------YIVSK-RLQLGKLTVVDA------TNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNR 121 (171)
T ss_dssp ---------------HHHHH-HHHTTCCEEEES------CCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTC
T ss_pred ---------------HHHHH-HHhCCCeEEEEC------CCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcc
Confidence 11111 223344433332 2346999999999999999999999999999999999
Q ss_pred ------------HHHHHHHHHHHHHHCCcEEEEEecCCC
Q 007952 167 ------------TALRIVQMLQDIAEAGKTVVTTIHQPS 193 (583)
Q Consensus 167 ------------~~~~i~~~l~~l~~~g~tii~~~H~~~ 193 (583)
...++.+.|++++++|.|+|++||++.
T Consensus 122 ~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~ 160 (171)
T 4gp7_A 122 TDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPE 160 (171)
T ss_dssp SSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHH
T ss_pred cCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHH
Confidence 558999999999877999999999964
No 70
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.91 E-value=3.8e-27 Score=251.16 Aligned_cols=170 Identities=15% Similarity=0.169 Sum_probs=135.6
Q ss_pred cceeeceEEEEeCCe--------------------EEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccc
Q 007952 7 KDILNGITGSVNPGE--------------------VLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 66 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge--------------------~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~ 66 (583)
+.+|+|+|+++++|+ ++||+||||||||||+|+|+|... +.+|+|.++|.+.+ +
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~--p~~GsI~~~g~~~t---~- 109 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGN--EEEGAAKTGVVEVT---M- 109 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCT--TSTTSCCCCC-------C-
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCC--ccCceEEECCeecc---e-
Confidence 468999999999999 999999999999999999999653 57899999997653 1
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChH--HHHHHHHH
Q 007952 67 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG--ERKRVCIG 144 (583)
Q Consensus 67 ~i~yv~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgG--erqRv~ia 144 (583)
.+|++|++ .++.+|+.|++.+.. + +.+++++++.+++.+... . +. +||| ||||+.||
T Consensus 110 -~~~v~q~~-~~~~ltv~D~~g~~~----~--------~~~~~~~L~~~~L~~~~~-~-----~~-lS~G~~~kqrv~la 168 (413)
T 1tq4_A 110 -ERHPYKHP-NIPNVVFWDLPGIGS----T--------NFPPDTYLEKMKFYEYDF-F-----II-ISATRFKKNDIDIA 168 (413)
T ss_dssp -CCEEEECS-SCTTEEEEECCCGGG----S--------SCCHHHHHHHTTGGGCSE-E-----EE-EESSCCCHHHHHHH
T ss_pred -eEEecccc-ccCCeeehHhhcccc----h--------HHHHHHHHHHcCCCccCC-e-----EE-eCCCCccHHHHHHH
Confidence 27899985 577889998875431 1 124678899999876522 1 22 9999 99999999
Q ss_pred HHHHh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-----HCC----cEEEEEecCCCh-HHHhhcCeE
Q 007952 145 NEIII----------NPSLLFLDEPTSGLDSTTALRIVQMLQDIA-----EAG----KTVVTTIHQPSS-RLFHKFDKL 203 (583)
Q Consensus 145 ~~L~~----------~p~illLDEPtsgLD~~~~~~i~~~l~~l~-----~~g----~tii~~~H~~~~-~i~~~~D~v 203 (583)
++|+. +|++++|||||+|||+.++.++++.++++. +.| .+|++++|+... .+.+++|++
T Consensus 169 ~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I 247 (413)
T 1tq4_A 169 KAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKL 247 (413)
T ss_dssp HHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHH
T ss_pred HHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHH
Confidence 99999 999999999999999999999999999985 333 678899998653 255566654
No 71
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.89 E-value=1.4e-24 Score=206.35 Aligned_cols=145 Identities=19% Similarity=0.159 Sum_probs=102.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCCCHHHHHHHHHHcCCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPN 97 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~lTv~e~l~~~~~~~~~~ 97 (583)
.++|+||||||||||+|+|+|.+. |.++|.+..+ ..++.+||++|+. ++.+++ + +..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-------i~~~g~~~~~~~~~~~~~~ig~~~~~~------~~~~~~-~-~~~---- 62 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-------KRAIGFWTEEVRDPETKKRTGFRIITT------EGKKKI-F-SSK---- 62 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-------GGEEEEEEEEEC------CCEEEEEET------TCCEEE-E-EET----
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-------CcCCCEEhhhhccccccceeEEEeecC------cHHHHH-H-Hhh----
Confidence 589999999999999999999652 3344433211 3456799999975 222322 1 000
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHH-----HHhCCCEEEEeC--CCCCCCHHHHHH
Q 007952 98 TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNE-----IIINPSLLFLDE--PTSGLDSTTALR 170 (583)
Q Consensus 98 ~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~-----L~~~p~illLDE--PtsgLD~~~~~~ 170 (583)
+... +... +.++..||||||||++||++ ++.+|++++||| ||++||+.....
T Consensus 63 ------------------~~~~--~~~~-~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~ 121 (178)
T 1ye8_A 63 ------------------FFTS--KKLV-GSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDL 121 (178)
T ss_dssp ------------------TCCC--SSEE-TTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHH
T ss_pred ------------------cCCc--cccc-cccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHH
Confidence 0000 0111 23467899999999999996 999999999999 999999999999
Q ss_pred HHHHHHHHHHCCcEEEEEec--CCChHHHhhcCeEEEEcCCeEEE
Q 007952 171 IVQMLQDIAEAGKTVVTTIH--QPSSRLFHKFDKLILLGKGSLLY 213 (583)
Q Consensus 171 i~~~l~~l~~~g~tii~~~H--~~~~~i~~~~D~v~~L~~G~iv~ 213 (583)
+.+.+++ .+.|+|+++| +....+.+++|+ .+|+++.
T Consensus 122 l~~~l~~---~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 122 VRQIMHD---PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp HHHHHTC---TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred HHHHHhc---CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 9988876 4777888887 224556677887 5677765
No 72
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.89 E-value=2e-27 Score=231.12 Aligned_cols=182 Identities=18% Similarity=0.156 Sum_probs=120.1
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHH
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVK 84 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~ 84 (583)
+.+.+++| .++++||+++|+||||||||||+|+|+|... ...+.+.+.+.+.....++.++|++|++..++.+|+.
T Consensus 7 ~~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~--~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 7 DTKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP--NLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp --------------CCCEEEEECSTTSSHHHHHHHHHHHST--TCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHT
T ss_pred CCCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC--ceEEcccccccCCcccccCCCeeEecCHHHHHHHHhc
Confidence 45678888 7999999999999999999999999999653 2223222222222222356799999998888888887
Q ss_pred HHHHHHHHcCC---CCCCCHHHHHHHHHHH------HHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEE
Q 007952 85 ETLTYAALLRL---PNTLTKQQKEKRAIDV------INELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 155 (583)
Q Consensus 85 e~l~~~~~~~~---~~~~~~~~~~~~v~~~------l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ill 155 (583)
|++........ ....++++.++++++. ++.+|+.+..+. .++.|| +|+.+|++++
T Consensus 83 ~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----~~~~lS-----------~l~~~p~~~~ 146 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKT-----MPEAVT-----------VFLAPPSWQD 146 (207)
T ss_dssp TCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHH-----CTTSEE-----------EEEECSCHHH
T ss_pred CCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHh-----cCCcEE-----------EEEECCCHHH
Confidence 77632110000 0012344555556555 455555444443 345677 8899999999
Q ss_pred EeCCCCCC----CHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhhcCeEEEEc
Q 007952 156 LDEPTSGL----DSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLG 207 (583)
Q Consensus 156 LDEPtsgL----D~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~ 207 (583)
|||||+|+ |+..+.++.+.++++++ .|.|+|+++||+. ++.++||+|++|.
T Consensus 147 LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~d~i~~l~ 202 (207)
T 1znw_A 147 LQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLE-SACAELVSLLVGT 202 (207)
T ss_dssp HHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHH-HHHHHHHHHHC--
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHH-HHHHHHHHHHHhc
Confidence 99999998 78899999999999975 5899999999964 6889999999985
No 73
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.88 E-value=1.3e-26 Score=237.55 Aligned_cols=158 Identities=20% Similarity=0.249 Sum_probs=121.8
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHH-
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE- 85 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e- 85 (583)
+.+|+|+|++|++|++++|+||||||||||+++|+|.+ +|+| ++|++|++.+++. |++|
T Consensus 113 ~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~-----~G~I--------------~~~v~q~~~lf~~-ti~~~ 172 (305)
T 2v9p_A 113 INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL-----GGSV--------------LSFANHKSHFWLA-SLADT 172 (305)
T ss_dssp HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH-----TCEE--------------ECGGGTTSGGGGG-GGTTC
T ss_pred hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc-----CceE--------------EEEecCccccccc-cHHHH
Confidence 45899999999999999999999999999999999954 6888 3567888877764 7776
Q ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCH
Q 007952 86 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS 165 (583)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~ 165 (583)
|+.+.. ..+. .+.+.++.+ |.+..+ ...|||||||| ||+|+.+|+||+ ||+||+
T Consensus 173 ni~~~~------~~~~-----~~~~~i~~~-L~~gld-------g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~ 226 (305)
T 2v9p_A 173 RAALVD------DATH-----ACWRYFDTY-LRNALD-------GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDV 226 (305)
T ss_dssp SCEEEE------EECH-----HHHHHHHHT-TTGGGG-------TCCEECCCSSC---CCCEECCCCEEE----EESSCS
T ss_pred hhccCc------cccH-----HHHHHHHHH-hHccCC-------ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCH
Confidence 765521 1111 345556654 443333 35899999999 999999999999 999999
Q ss_pred HHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHHHHHhc
Q 007952 166 TTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSI 227 (583)
Q Consensus 166 ~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~~ 227 (583)
.++..+.. .+|++. ..+.+|+| +|++|++++.|+++++..+|..+
T Consensus 227 ~~~~~i~~--------------ltH~~~--~~~~aD~i-vl~~G~iv~~g~~~el~~~y~~l 271 (305)
T 2v9p_A 227 QAEDRYLY--------------LHSRVQ--TFRFEQPC-TDESGEQPFNITDADWKSFFVRL 271 (305)
T ss_dssp TTCGGGGG--------------GTTTEE--EEECCCCC-CCC---CCCCCCHHHHHHHHHHS
T ss_pred HHHHHHHH--------------HhCCHH--HHHhCCEE-EEeCCEEEEeCCHHHHHHHHHHH
Confidence 99988862 188865 35789999 99999999999999986666543
No 74
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.87 E-value=4.6e-24 Score=219.27 Aligned_cols=173 Identities=16% Similarity=0.185 Sum_probs=132.5
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCcc--------c--cccEEEEccCCC-CC
Q 007952 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS--------L--KSKIGFVTQDDV-LF 78 (583)
Q Consensus 10 L~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~--------~--~~~i~yv~Q~~~-~~ 78 (583)
++++|+++++|++++|+||||||||||++.|+|.+. +.+|+|.++|.+..+. + +..++|++|++. ++
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~--~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~ 167 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK--NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 167 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHH--HcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccC
Confidence 357899999999999999999999999999999753 4689999999876431 1 346999999988 89
Q ss_pred CCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCC--EEEE
Q 007952 79 PHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPS--LLFL 156 (583)
Q Consensus 79 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~--illL 156 (583)
|.+||+|++.++.... . ...+++.+|+.+..+. .+.+|| |||++||++++.+|+ +|+|
T Consensus 168 ~~~~v~e~l~~~~~~~----~--------d~~lldt~gl~~~~~~-----~~~eLS---kqr~~iaral~~~P~e~lLvL 227 (302)
T 3b9q_A 168 AATVLSKAVKRGKEEG----Y--------DVVLCDTSGRLHTNYS-----LMEELI---ACKKAVGKIVSGAPNEILLVL 227 (302)
T ss_dssp HHHHHHHHHHHHHHTT----C--------SEEEECCCCCSSCCHH-----HHHHHH---HHHHHHHTTSTTCCSEEEEEE
T ss_pred HHHHHHHHHHHHHHcC----C--------cchHHhcCCCCcchhH-----HHHHHH---HHHHHHHHhhccCCCeeEEEE
Confidence 9999999998864211 0 0134567787765554 356899 999999999999999 9999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCC--------hHHHhhcCeEEEEcCCeE
Q 007952 157 DEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPS--------SRLFHKFDKLILLGKGSL 211 (583)
Q Consensus 157 DEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~--------~~i~~~~D~v~~L~~G~i 211 (583)
| ||+|||+.++ ++++.+ .|.|+|++||... +...+..+.|.++..|+.
T Consensus 228 D-ptsglD~~~~------~~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 228 D-GNTGLNMLPQ------AREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp E-GGGGGGGHHH------HHHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred e-CCCCcCHHHH------HHHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 9 9999999865 345553 5899999999422 122344567888888854
No 75
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.87 E-value=9.4e-22 Score=225.51 Aligned_cols=110 Identities=25% Similarity=0.380 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHcCCCcc-ccccccCccCcccChHHHHHHHHHHHHHhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 007952 104 KEKRAIDVINELGLERC-QDTMIGGSFVRGVSGGERKRVCIGNEIIINP--SLLFLDEPTSGLDSTTALRIVQMLQDIAE 180 (583)
Q Consensus 104 ~~~~v~~~l~~lgL~~~-~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p--~illLDEPtsgLD~~~~~~i~~~l~~l~~ 180 (583)
..++++ .++.+||.+. .+. .+.+|||||||||.||++|..+| ++|+|||||+|||+.....+.+.|++|++
T Consensus 356 i~~rl~-~L~~vGL~~l~l~r-----~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~ 429 (842)
T 2vf7_A 356 LVKRLD-VLLHLGLGYLGLDR-----STPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKR 429 (842)
T ss_dssp HHHHHH-HHHHTTCTTSBTTC-----BGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHT
T ss_pred HHHHHH-HHHhCCCCcCCccC-----CcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHH
Confidence 444554 5788999754 343 46799999999999999999999 59999999999999999999999999998
Q ss_pred CCcEEEEEecCCChHHHhhcCeEEEE------cCCeEEEEcChhhHH
Q 007952 181 AGKTVVTTIHQPSSRLFHKFDKLILL------GKGSLLYFGKASEAM 221 (583)
Q Consensus 181 ~g~tii~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~ 221 (583)
.|.|||+++|++. +.+.+|+|++| ++|++++.|+++++.
T Consensus 430 ~G~TVIvVeHdl~--~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~ 474 (842)
T 2vf7_A 430 GGNSLFVVEHDLD--VIRRADWLVDVGPEAGEKGGEILYSGPPEGLK 474 (842)
T ss_dssp TTCEEEEECCCHH--HHTTCSEEEEECSSSGGGCCSEEEEECGGGGG
T ss_pred cCCEEEEEcCCHH--HHHhCCEEEEeCCCcccCCCEEEEecCHHHHH
Confidence 8999999999963 55789999999 799999999998754
No 76
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.85 E-value=6.9e-23 Score=214.66 Aligned_cols=172 Identities=16% Similarity=0.190 Sum_probs=133.1
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCcc--------c--cccEEEEccCCC-CCC
Q 007952 11 NGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS--------L--KSKIGFVTQDDV-LFP 79 (583)
Q Consensus 11 ~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~--------~--~~~i~yv~Q~~~-~~~ 79 (583)
+++|+++++|++++|+||||||||||++.|+|.+. +.+|+|.++|.+..+. + +..++|++|++. ++|
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~--~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p 225 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK--NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA 225 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcc--ccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccCh
Confidence 46899999999999999999999999999999763 4689999999886431 1 346999999988 899
Q ss_pred CCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCC--EEEEe
Q 007952 80 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPS--LLFLD 157 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~--illLD 157 (583)
.+|++|++.++.... .. ..+++.+|+.+..+. .+.+|| |||++||++++.+|+ +|+||
T Consensus 226 ~~tv~e~l~~~~~~~----~d--------~~lldt~Gl~~~~~~-----~~~eLS---kqr~~iaral~~~P~e~lLvLD 285 (359)
T 2og2_A 226 ATVLSKAVKRGKEEG----YD--------VVLCDTSGRLHTNYS-----LMEELI---ACKKAVGKIVSGAPNEILLVLD 285 (359)
T ss_dssp HHHHHHHHHHHHHTT----CS--------EEEEECCCCSSCCHH-----HHHHHH---HHHHHHHHHSTTCCSEEEEEEE
T ss_pred hhhHHHHHHHHHhCC----CH--------HHHHHhcCCChhhhh-----HHHHHH---HHHHHHHHHHhcCCCceEEEEc
Confidence 999999998864211 00 134566787765554 356899 999999999999999 99999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCC--------hHHHhhcCeEEEEcCCeE
Q 007952 158 EPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPS--------SRLFHKFDKLILLGKGSL 211 (583)
Q Consensus 158 EPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~--------~~i~~~~D~v~~L~~G~i 211 (583)
||+|||+.++. +++.+ .|.|+|++||... +......+.|..+..|+.
T Consensus 286 -pttglD~~~~~------~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 286 -GNTGLNMLPQA------REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp -GGGGGGGHHHH------HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred -CCCCCCHHHHH------HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 99999998653 44543 4899999999421 122344567877777753
No 77
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.85 E-value=5.5e-24 Score=215.40 Aligned_cols=146 Identities=19% Similarity=0.227 Sum_probs=95.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-cccccEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLT 100 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-~~~~~i~yv~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~ 100 (583)
.++|+||||||||||+|+|+|... +.+|+|.++|+++.. ..++.++|++|++.+++.+||.||+.|+..... ...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~--~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~--~~~ 79 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV--SRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINN--ENC 79 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC--------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBC--TTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC--CCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhccc--HHH
Confidence 479999999999999999999653 578999999988754 345779999999999999999999988743221 111
Q ss_pred HHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 007952 101 KQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE 180 (583)
Q Consensus 101 ~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~ 180 (583)
.+.+.+.++ .+..+. ...+||||||||+++||+++. ++++|||+.|||+.. .+.++++++
T Consensus 80 ----~~~i~~~~~----~~~~~~-----~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~ 139 (270)
T 3sop_A 80 ----WEPIEKYIN----EQYEKF-----LKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSK 139 (270)
T ss_dssp ----SHHHHHHHH----HHHHHH-----HHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHT
T ss_pred ----HHHHHHHHH----HHHHhh-----hHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHh
Confidence 122333332 222232 245899999999999999775 999999999999987 556666666
Q ss_pred CCcEEEEEecCC
Q 007952 181 AGKTVVTTIHQP 192 (583)
Q Consensus 181 ~g~tii~~~H~~ 192 (583)
. ++||+++|..
T Consensus 140 ~-~~vI~Vi~K~ 150 (270)
T 3sop_A 140 V-VNIIPVIAKA 150 (270)
T ss_dssp T-SEEEEEETTG
T ss_pred c-CcEEEEEecc
Confidence 5 8999999873
No 78
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.84 E-value=5.6e-21 Score=199.68 Aligned_cols=78 Identities=27% Similarity=0.349 Sum_probs=70.1
Q ss_pred ccCcccChHHHH------HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcC
Q 007952 128 SFVRGVSGGERK------RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFD 201 (583)
Q Consensus 128 ~~~~~LSgGerq------Rv~ia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D 201 (583)
..+..||||||| |+++|++|+.+|++|+|||||+|||+..+..+++.|+++.++|+|||++||++ ++.+.||
T Consensus 244 ~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~--~~~~~~d 321 (339)
T 3qkt_A 244 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAAD 321 (339)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCS
T ss_pred CChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChH--HHHHhCC
Confidence 356789999999 56777888889999999999999999999999999999987789999999994 4678999
Q ss_pred eEEEEc
Q 007952 202 KLILLG 207 (583)
Q Consensus 202 ~v~~L~ 207 (583)
+++.|.
T Consensus 322 ~~~~l~ 327 (339)
T 3qkt_A 322 HVIRIS 327 (339)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999985
No 79
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.84 E-value=3.3e-21 Score=202.19 Aligned_cols=86 Identities=15% Similarity=0.146 Sum_probs=77.4
Q ss_pred CccCc-ccChHHHHHHHHHHHHH---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHH
Q 007952 127 GSFVR-GVSGGERKRVCIGNEII---------INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRL 196 (583)
Q Consensus 127 ~~~~~-~LSgGerqRv~ia~~L~---------~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i 196 (583)
+..++ .+|||||||++||++|+ .+|+||+|||||++||+..+..+++.++++. .|+|++||. ..
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th~-~~-- 332 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTEL-AP-- 332 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESSC-CT--
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEec-cc--
Confidence 34566 79999999999999999 8999999999999999999999999998874 799999994 32
Q ss_pred HhhcCeEEEEcCCeEEEEcChhhH
Q 007952 197 FHKFDKLILLGKGSLLYFGKASEA 220 (583)
Q Consensus 197 ~~~~D~v~~L~~G~iv~~G~~~~~ 220 (583)
.+|++++|++|+++..|+++++
T Consensus 333 --~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 333 --GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp --TCSEEEEEETTEEEECCCTTTS
T ss_pred --cCCEEEEEECCEEEecCCHHHH
Confidence 7999999999999999998875
No 80
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.84 E-value=3.4e-23 Score=223.10 Aligned_cols=177 Identities=14% Similarity=0.142 Sum_probs=141.3
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCc---cCCc---------cccccEEEEcc
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH---PYSK---------SLKSKIGFVTQ 73 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~---~~~~---------~~~~~i~yv~Q 73 (583)
++++|+++ +++++||+++|+||||||||||+++|+|... ++.|.|.++|+ ++.+ .+++.++|++|
T Consensus 144 g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~--~~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q 220 (438)
T 2dpy_A 144 GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTR--ADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAP 220 (438)
T ss_dssp SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSC--CSEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEEC
T ss_pred CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccC--CCeEEEEEeceecHHHHHHHHhhccccccCceEEEEEC
Confidence 46799999 9999999999999999999999999999653 56899999998 4422 24577999999
Q ss_pred C-CCCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCC
Q 007952 74 D-DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPS 152 (583)
Q Consensus 74 ~-~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~ 152 (583)
+ +..++.+||.+|+.+.+.... .-+ .++.. .+ .....+|+|| ||++|| +.+|+
T Consensus 221 ~~~~~~~~~~v~~~~~~~ae~~~------------------~~~-~~v~~-~l--d~l~~lS~g~-qrvslA---l~~p~ 274 (438)
T 2dpy_A 221 ADVSPLLRMQGAAYATRIAEDFR------------------DRG-QHVLL-IM--DSLTRYAMAQ-REIALA---IGEPP 274 (438)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHH------------------TTT-CEEEE-EE--ECHHHHHHHH-HHHHHH---TTCCC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHH------------------hCC-CCHHH-HH--HhHHHHHHHH-HHHHHH---hCCCc
Confidence 5 566778899999987653210 000 01100 01 1245799999 999999 88888
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHH---C-Cc-----EEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhH
Q 007952 153 LLFLDEPTSGLDSTTALRIVQMLQDIAE---A-GK-----TVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 220 (583)
Q Consensus 153 illLDEPtsgLD~~~~~~i~~~l~~l~~---~-g~-----tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 220 (583)
+ |+|||+.+...+.+.++++.+ + |+ ||++++||.+ ...+|++++|.+|+++..|++++.
T Consensus 275 ~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~---~~iad~v~~l~dG~Ivl~~~~~~~ 342 (438)
T 2dpy_A 275 A------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ---DPIADSARAILDGHIVLSRRLAEA 342 (438)
T ss_dssp C------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC---CHHHHHHHHHSSEEEEECHHHHHT
T ss_pred c------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc---chhhceEEEEeCcEEEEeCCHHHc
Confidence 8 999999999999999999876 3 74 9999999986 367999999999999999988765
No 81
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.84 E-value=1.8e-22 Score=210.11 Aligned_cols=131 Identities=20% Similarity=0.256 Sum_probs=106.4
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc--cccccEEEEccCCCCCCCCCHHHH
Q 007952 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKSKIGFVTQDDVLFPHLTVKET 86 (583)
Q Consensus 9 iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~--~~~~~i~yv~Q~~~~~~~lTv~e~ 86 (583)
+++++|+.+++|++++|+||||||||||+|+|+|... +.+|.|.++|.+... ..++.+++++
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~--~~~g~i~i~~~~e~~~~~~~~~i~~~~-------------- 223 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIP--KEERIISIEDTEEIVFKHHKNYTQLFF-------------- 223 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSC--TTSCEEEEESSCCCCCSSCSSEEEEEC--------------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCc--CCCcEEEECCeeccccccchhEEEEEe--------------
Confidence 7899999999999999999999999999999999653 578999999864211 1223344332
Q ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHH
Q 007952 87 LTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDST 166 (583)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~ 166 (583)
+ |||+||++||++|..+|+++++||||+
T Consensus 224 ---------------------------------------------g--gg~~~r~~la~aL~~~p~ilildE~~~----- 251 (330)
T 2pt7_A 224 ---------------------------------------------G--GNITSADCLKSCLRMRPDRIILGELRS----- 251 (330)
T ss_dssp ---------------------------------------------B--TTBCHHHHHHHHTTSCCSEEEECCCCS-----
T ss_pred ---------------------------------------------C--CChhHHHHHHHHhhhCCCEEEEcCCCh-----
Confidence 1 899999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeE
Q 007952 167 TALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 211 (583)
Q Consensus 167 ~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~i 211 (583)
.++.+.|+.+.+.+.|+|+|+|+++ ..+.+||+++|.+|+.
T Consensus 252 --~e~~~~l~~~~~g~~tvi~t~H~~~--~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 252 --SEAYDFYNVLCSGHKGTLTTLHAGS--SEEAFIRLANMSSSNS 292 (330)
T ss_dssp --THHHHHHHHHHTTCCCEEEEEECSS--HHHHHHHHHHHHHTSG
T ss_pred --HHHHHHHHHHhcCCCEEEEEEcccH--HHHHhhhheehhcCCc
Confidence 2456778777654458999999976 5678999999988754
No 82
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.83 E-value=2.8e-25 Score=217.93 Aligned_cols=171 Identities=15% Similarity=0.119 Sum_probs=109.2
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-----cccccEEEEccCCCCCCCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-----SLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-----~~~~~i~yv~Q~~~~~~~l 81 (583)
+.-|+|+|+++++|++++|+||||||||||+|+|+|.. + |+|.+ |.+... ..++.++|++|++.+|+.+
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~---p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 83 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF---P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDK 83 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHS---T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHH
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC---C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHh
Confidence 45799999999999999999999999999999999954 2 89999 765421 2356789999987666543
Q ss_pred C-HHHHHHHHHHcCCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHH-----HHHHHhCCCEE
Q 007952 82 T-VKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI-----GNEIIINPSLL 154 (583)
Q Consensus 82 T-v~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~i-----a~~L~~~p~il 154 (583)
+ +.+++.+. ..... ...+ .+.++++++...+. .+ ...+|||||||++| +++++.+|+++
T Consensus 84 ~~~~~~l~~~-~~~~~~~g~~----~~~i~~~l~~~~~~-----il----~~~lsggq~qR~~i~~~~~~~~ll~~~~~~ 149 (218)
T 1z6g_A 84 LKNEDFLEYD-NYANNFYGTL----KSEYDKAKEQNKIC-----LF----EMNINGVKQLKKSTHIKNALYIFIKPPSTD 149 (218)
T ss_dssp HHTTCEEEEE-EETTEEEEEE----HHHHHHHHHTTCEE-----EE----EECHHHHHHHTTCSSCCSCEEEEEECSCHH
T ss_pred hhccchhhhh-hcccccCCCc----HHHHHHHHhCCCcE-----EE----EecHHHHHHHHHHhcCCCcEEEEEeCcCHH
Confidence 2 11111110 00000 0111 12456666653321 11 14799999999999 89999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEc
Q 007952 155 FLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG 207 (583)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~ 207 (583)
+|||||+++|..+...+.+.|+++.+ ++| ++| + ..||.|++++
T Consensus 150 ~Lde~~~~~d~~~~~~i~~~l~~~~~-~~~---~~h-~-----~~~d~iiv~~ 192 (218)
T 1z6g_A 150 VLLSRLLTRNTENQEQIQKRMEQLNI-ELH---EAN-L-----LNFNLSIIND 192 (218)
T ss_dssp HHHHHHHHTCCCCHHHHHHHHHHHHH-HHH---HHT-T-----SCCSEEEECS
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHH-HHH---hhc-c-----cCCCEEEECC
Confidence 99999999999999999999988754 333 344 1 3466665554
No 83
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.83 E-value=1.7e-22 Score=201.39 Aligned_cols=183 Identities=11% Similarity=0.086 Sum_probs=111.5
Q ss_pred CCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCC
Q 007952 2 TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHL 81 (583)
Q Consensus 2 ~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~l 81 (583)
++.+++.+|+|+||++++|+++||+||||||||||+++|+|.+ |.+.++ ..++.++|++|++ +++.+
T Consensus 7 ~~~~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l------G~~~~~------~~~~~i~~v~~d~-~~~~l 73 (245)
T 2jeo_A 7 HSSGVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL------GQNEVE------QRQRKVVILSQDR-FYKVL 73 (245)
T ss_dssp ----------------CCSEEEEEECSTTSSHHHHHHHHHHHH------TGGGSC------GGGCSEEEEEGGG-GBCCC
T ss_pred ccCCCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh------chhccc------ccCCceEEEeCCc-Ccccc
Confidence 3567788999999999999999999999999999999999853 333333 2467799999995 77889
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 161 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPts 161 (583)
|+.|++.+....... ..+.....+.+.+.++.+ .+..+. .+..+|+||+||+.+ ++++.+|+++++|||..
T Consensus 74 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~L~~l--~~~~~~-----~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~ 144 (245)
T 2jeo_A 74 TAEQKAKALKGQYNF-DHPDAFDNDLMHRTLKNI--VEGKTV-----EVPTYDFVTHSRLPE-TTVVYPADVVLFEGILV 144 (245)
T ss_dssp CHHHHHHHHTTCCCT-TSGGGBCHHHHHHHHHHH--HTTCCE-----EECCEETTTTEECSS-CEEECCCSEEEEECTTT
T ss_pred CHhHhhhhhccCCCC-CCcccccHHHHHHHHHHH--HCCCCe-----ecccccccccCccCc-eEEecCCCEEEEeCccc
Confidence 999998775432110 001111123344555543 232332 356899999999988 57788999999999988
Q ss_pred CCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHh-hcCeEEEEcCCeEEEEcChhhHHHHHH
Q 007952 162 GLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFH-KFDKLILLGKGSLLYFGKASEAMAYFS 225 (583)
Q Consensus 162 gLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~-~~D~v~~L~~G~iv~~G~~~~~~~~f~ 225 (583)
..|.. +.++ .+.+|++++|+.. .+.+ +++++ ++|+ +.+++.+.+.
T Consensus 145 ~~~~~--------l~~~--~~~~i~v~th~~~-~~~r~~~r~~---~~G~-----~~e~~~~~~~ 190 (245)
T 2jeo_A 145 FYSQE--------IRDM--FHLRLFVDTDSDV-RLSRRVLRDV---RRGR-----DLEQILTQYT 190 (245)
T ss_dssp TTSHH--------HHTT--CSEEEEEECCHHH-HHHHHHHHHT---C--------CHHHHHHHHH
T ss_pred cccHH--------HHHh--cCeEEEEECCHHH-HHHHHHHHHH---HcCC-----CHHHHHHHHH
Confidence 88764 2222 3789999999733 3333 34444 5564 5666665443
No 84
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.83 E-value=8.9e-22 Score=201.52 Aligned_cols=185 Identities=15% Similarity=0.114 Sum_probs=122.2
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCccc-EEEECCccCCc-cccccEEEEccCCCCCCCCCH
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGG-SITYNDHPYSK-SLKSKIGFVTQDDVLFPHLTV 83 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G-~I~~~g~~~~~-~~~~~i~yv~Q~~~~~~~lTv 83 (583)
...+|+++++.+++|++++|+||||||||||++.|+|... +.+| .|.+.+.+... ..++++..+.|+.. +++
T Consensus 21 g~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~--~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~~ 94 (296)
T 1cr0_A 21 GCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWG--TAMGKKVGLAMLEESVEETAEDLIGLHNRVR----LRQ 94 (296)
T ss_dssp SCTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHH--HTSCCCEEEEESSSCHHHHHHHHHHHHTTCC----GGG
T ss_pred CHHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHH--HHcCCeEEEEeCcCCHHHHHHHHHHHHcCCC----hhh
Confidence 3568999999999999999999999999999999999653 3346 67554433332 23333333343322 123
Q ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHH-HHHHHHHHHHHhCCCEEEEeCCCC-
Q 007952 84 KETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE-RKRVCIGNEIIINPSLLFLDEPTS- 161 (583)
Q Consensus 84 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGe-rqRv~ia~~L~~~p~illLDEPts- 161 (583)
.+++.... .+.++..+.++++++..++. ..+ .+..+|.+| +||+. |+++..+|+++++||||+
T Consensus 95 ~~~l~~~~-------~~~~~~~~~~~~~l~~~~l~-i~~------~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~ 159 (296)
T 1cr0_A 95 SDSLKREI-------IENGKFDQWFDELFGNDTFH-LYD------SFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIV 159 (296)
T ss_dssp CHHHHHHH-------HHHTHHHHHHHHHHSSSCEE-EEC------CCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC--
T ss_pred ccccccCC-------CCHHHHHHHHHHHhccCCEE-EEC------CCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCcccc
Confidence 33443321 11223334455554432221 111 124688888 66776 999999999999999999
Q ss_pred --C---CCH-HHHHHHHHHHHHHHHC-CcEEEEEecCCC-h--------------------HHHhhcCeEEEEcCCeE
Q 007952 162 --G---LDS-TTALRIVQMLQDIAEA-GKTVVTTIHQPS-S--------------------RLFHKFDKLILLGKGSL 211 (583)
Q Consensus 162 --g---LD~-~~~~~i~~~l~~l~~~-g~tii~~~H~~~-~--------------------~i~~~~D~v~~L~~G~i 211 (583)
+ +|. ....++++.|++++++ |+|||+++|+.. . .+.+.||+|++|++|+.
T Consensus 160 ~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 160 VSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 5 565 6778899999999865 999999999951 2 57789999999998874
No 85
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.83 E-value=7.6e-21 Score=219.70 Aligned_cols=153 Identities=23% Similarity=0.411 Sum_probs=120.1
Q ss_pred CcccEEEECCccCCccccccEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCC-C-H---HHHHHHHHHHHHHcCCCcc-c
Q 007952 48 TVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTL-T-K---QQKEKRAIDVINELGLERC-Q 121 (583)
Q Consensus 48 ~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~l~~~~~~~~~~~~-~-~---~~~~~~v~~~l~~lgL~~~-~ 121 (583)
+..|+|.++|+++.+ +..+||.|++.|......+... . . .+..++..+.+..+||.+. .
T Consensus 394 ~~~~~V~i~G~~i~~---------------~~~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~vgL~~l~l 458 (916)
T 3pih_A 394 REALSVKINGLNIHE---------------FTELSISEELEFLKNLNLTEREREIVGELLKEIEKRLEFLVDVGLEYLTL 458 (916)
T ss_dssp TTGGGEEETTEEHHH---------------HHHSBHHHHHHHHHSCCCCTTTTTTHHHHHHHHHHHHHHHHTTTCTTCBT
T ss_pred hHhcCcEECCccHHH---------------hhhCCHHHHHHHHHhccCcHHHHHHHHhhHHHHHHHHHHHHHcCCccccc
Confidence 467999999987632 3346888888875544332111 0 0 0111234567888999754 3
Q ss_pred cccccCccCcccChHHHHHHHHHHHHHhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhh
Q 007952 122 DTMIGGSFVRGVSGGERKRVCIGNEIIINPS--LLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHK 199 (583)
Q Consensus 122 ~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~--illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~ 199 (583)
++ .+.+|||||||||.||++|+++|+ +|+|||||+|||+.....+++.|++++++|.|||+++||+. ....
T Consensus 459 ~r-----~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd~~--~~~~ 531 (916)
T 3pih_A 459 SR-----SATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEE--VIRN 531 (916)
T ss_dssp TS-----BGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCCHH--HHHT
T ss_pred cC-----CcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHHh
Confidence 43 467999999999999999999887 99999999999999999999999999888999999999963 3456
Q ss_pred cCeEEEE------cCCeEEEEcChhhHHH
Q 007952 200 FDKLILL------GKGSLLYFGKASEAMA 222 (583)
Q Consensus 200 ~D~v~~L------~~G~iv~~G~~~~~~~ 222 (583)
||+|++| ++|++++.|+++++.+
T Consensus 532 aD~ii~lgpgag~~~G~iv~~G~~~e~~~ 560 (916)
T 3pih_A 532 ADHIIDIGPGGGTNGGRVVFQGTVDELLK 560 (916)
T ss_dssp CSEEEEEESSSGGGCSEEEEEECHHHHHH
T ss_pred CCEEEEEcCCcccCCCEEEEeechhhhhc
Confidence 9999999 8999999999998754
No 86
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.82 E-value=2.7e-20 Score=205.26 Aligned_cols=78 Identities=21% Similarity=0.363 Sum_probs=71.5
Q ss_pred cCccc-ChHHHHHHHHHHHHHhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEE
Q 007952 129 FVRGV-SGGERKRVCIGNEIIINP--SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLIL 205 (583)
Q Consensus 129 ~~~~L-SgGerqRv~ia~~L~~~p--~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~ 205 (583)
.+..| ||||||||+||++|+.+| ++|+|||||+|||+.++..+.+.|+++++ |+|||++||++. +...||++++
T Consensus 393 ~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~--~~~~~d~~~~ 469 (517)
T 4ad8_A 393 PLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQ--IAARAHHHYK 469 (517)
T ss_dssp BSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHH--HHHHSSEEEE
T ss_pred cHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCEEEE
Confidence 45677 999999999999999999 99999999999999999999999999987 899999999964 4567999999
Q ss_pred EcCC
Q 007952 206 LGKG 209 (583)
Q Consensus 206 L~~G 209 (583)
|+++
T Consensus 470 ~~~~ 473 (517)
T 4ad8_A 470 VEKQ 473 (517)
T ss_dssp EECC
T ss_pred Eecc
Confidence 9665
No 87
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.80 E-value=1.4e-22 Score=209.26 Aligned_cols=123 Identities=12% Similarity=0.164 Sum_probs=97.7
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHHHHHHHHHcCCC
Q 007952 17 VNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP 96 (583)
Q Consensus 17 i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~l~~~~~~~~~ 96 (583)
+++|+++||+||||||||||+++|+|.+. +..|. +.++||+|++.+++. |++||+.+...
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~--~~~G~-------------~~v~~v~qd~~~~~~-t~~e~~~~~~~---- 146 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLA--RWDHH-------------PRVDLVTTDGFLYPN-AELQRRNLMHR---- 146 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHH--TSTTC-------------CCEEEEEGGGGBCCH-HHHHHTTCTTC----
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhcc--ccCCC-------------CeEEEEecCccCCcc-cHHHHHHHHHh----
Confidence 89999999999999999999999999653 33332 469999999999988 99999854211
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCH
Q 007952 97 NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS 165 (583)
Q Consensus 97 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~ 165 (583)
...+.....+++.+.++.++ .+..+. .+..|||||+||+++|++++.+|+|||+|||+..+|+
T Consensus 147 ~g~~~~~d~~~~~~~L~~l~-~~~~~~-----~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 147 KGFPESYNRRALMRFVTSVK-SGSDYA-----CAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp TTSGGGBCHHHHHHHHHHHH-TTCSCE-----EEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred cCCChHHHHHHHHHHHHHhC-CCcccC-----CcccCChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 11222233456778888887 443333 3468999999999999999999999999999999986
No 88
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.80 E-value=1.2e-22 Score=224.55 Aligned_cols=169 Identities=15% Similarity=0.118 Sum_probs=119.4
Q ss_pred ccceeeceEE-EEeCCeEEEEECCCCCcHHHHHHH--HhCCCCCCCcccEEEECCccCCc---cccccEEEEccCCCCCC
Q 007952 6 EKDILNGITG-SVNPGEVLALMGPSGSGKTTLLNL--LSGRLMEPTVGGSITYNDHPYSK---SLKSKIGFVTQDDVLFP 79 (583)
Q Consensus 6 ~~~iL~~vs~-~i~~Ge~~~i~G~nGaGKSTLl~~--l~g~~~~~~~~G~I~~~g~~~~~---~~~~~i~yv~Q~~~~~~ 79 (583)
..++|+|+|+ .+++||+++|+||||||||||+++ ++|... +.+|+|+++|++... ..++.+||++|+....+
T Consensus 24 g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~--~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~ 101 (525)
T 1tf7_A 24 MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIE--FDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEG 101 (525)
T ss_dssp CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHH--HCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTT
T ss_pred CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh--CCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccC
Confidence 4679999999 999999999999999999999999 678542 357999999987432 23456899999754211
Q ss_pred CCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCC
Q 007952 80 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEP 159 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEP 159 (583)
+ +.+ ..... . ++..++++.+++.+..+. .++.|||| +|+++++|||
T Consensus 102 ~------l~~---~~~~~--~-----~~~~~~l~~~~l~~~~~~-----~~~~LS~g-------------~~~~lilDe~ 147 (525)
T 1tf7_A 102 K------LFI---LDASP--D-----PEGQEVVGGFDLSALIER-----INYAIQKY-------------RARRVSIDSV 147 (525)
T ss_dssp S------EEE---EECCC--C-----SSCCSCCSSHHHHHHHHH-----HHHHHHHH-------------TCSEEEEECS
T ss_pred c------EEE---EecCc--c-----cchhhhhcccCHHHHHHH-----HHHHHHHc-------------CCCEEEECCH
Confidence 1 100 00000 0 001112223333322222 23456665 4789999999
Q ss_pred CC-----CCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChH--------HHhhcCeEEEEcCCe
Q 007952 160 TS-----GLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSR--------LFHKFDKLILLGKGS 210 (583)
Q Consensus 160 ts-----gLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~--------i~~~~D~v~~L~~G~ 210 (583)
|+ +||+..+..+.+++++++++|+|||+++|++... ...+||+|++|++|+
T Consensus 148 t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~~ 211 (525)
T 1tf7_A 148 TSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNVL 211 (525)
T ss_dssp TTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEEC
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEEEc
Confidence 98 5699999999999999988899999999998652 234599999999843
No 89
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.79 E-value=1.4e-20 Score=218.54 Aligned_cols=161 Identities=16% Similarity=0.132 Sum_probs=112.2
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHH
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVK 84 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~ 84 (583)
+.+.+++|+|+++++|++++|+||||||||||||++++... ....| +|||++....+.
T Consensus 647 ~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~-~aq~G-----------------~~vpa~~~~~~~---- 704 (934)
T 3thx_A 647 EIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVL-MAQIG-----------------CFVPCESAEVSI---- 704 (934)
T ss_dssp -CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHH-HHHHT-----------------CCBSEEEEEEEC----
T ss_pred CceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHH-HHhcC-----------------CccccccccchH----
Confidence 34678999999999999999999999999999999942110 00011 011111000000
Q ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHH--HhCCCEEEEeCCCCC
Q 007952 85 ETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEI--IINPSLLFLDEPTSG 162 (583)
Q Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L--~~~p~illLDEPtsg 162 (583)
+++++..+|+.+. ..+++|+|++++..+|+++ +++|++++|||||+|
T Consensus 705 -----------------------~d~i~~~ig~~d~--------l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~G 753 (934)
T 3thx_A 705 -----------------------VDCILARVGAGDS--------QLKGVSTFMAEMLETASILRSATKDSLIIIDELGRG 753 (934)
T ss_dssp -----------------------CSEEEEECC-----------------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCS
T ss_pred -----------------------HHHHHHhcCchhh--------HHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCC
Confidence 0011122222211 1246888888888888888 899999999999999
Q ss_pred CCHHHHHHH-HHHHHHHHH-CCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhH
Q 007952 163 LDSTTALRI-VQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 220 (583)
Q Consensus 163 LD~~~~~~i-~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 220 (583)
+|+.....+ ..+++.+++ .|+|+|++||+. ++.+++|++..+.+|++...++.+++
T Consensus 754 lD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~--el~~lad~~~~v~ng~v~~~~~~~~l 811 (934)
T 3thx_A 754 TSTYDGFGLAWAISEYIATKIGAFCMFATHFH--ELTALANQIPTVNNLHVTALTTEETL 811 (934)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCCEEEEEESCG--GGGGGGGTCTTEEEEEEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcH--HHHHHhcccceeEeeEEEEEecCCcE
Confidence 999999888 677788876 499999999994 46789999999999999998887664
No 90
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.79 E-value=8.8e-20 Score=201.59 Aligned_cols=156 Identities=13% Similarity=0.119 Sum_probs=118.4
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHHHHHHHHHc
Q 007952 14 TGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALL 93 (583)
Q Consensus 14 s~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~l~~~~~~ 93 (583)
++.+++|++++|+||||||||||++.++|... + .|+ +.+.+++|++. .++.++. .
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~--~-~G~-------------~vi~~~~ee~~----~~l~~~~---~-- 329 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENAC--A-NKE-------------RAILFAYEESR----AQLLRNA---Y-- 329 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHH--T-TTC-------------CEEEEESSSCH----HHHHHHH---H--
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH--h-CCC-------------CEEEEEEeCCH----HHHHHHH---H--
Confidence 56899999999999999999999999999542 2 242 12456666541 1223222 1
Q ss_pred CCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHH-----HH
Q 007952 94 RLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDST-----TA 168 (583)
Q Consensus 94 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~-----~~ 168 (583)
+. ..+ +++ +...|+.+..+. .+..|||||+||+.+|+++..+|+++++| ||+|||.. .+
T Consensus 330 ~~--g~~-------~~~-~~~~g~~~~~~~-----~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~ 393 (525)
T 1tf7_A 330 SW--GMD-------FEE-MERQNLLKIVCA-----YPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFR 393 (525)
T ss_dssp TT--SCC-------HHH-HHHTTSEEECCC-----CGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHH
T ss_pred Hc--CCC-------HHH-HHhCCCEEEEEe-----ccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHH
Confidence 11 122 112 223455444433 46789999999999999999999999999 99999999 99
Q ss_pred HHHHHHHHHHHHCCcEEEEEecCCC---------hHHHhhcCeEEEEcCCe
Q 007952 169 LRIVQMLQDIAEAGKTVVTTIHQPS---------SRLFHKFDKLILLGKGS 210 (583)
Q Consensus 169 ~~i~~~l~~l~~~g~tii~~~H~~~---------~~i~~~~D~v~~L~~G~ 210 (583)
..+.++++.+++.|+|||+++|+.. ..+..+||+|++|++|+
T Consensus 394 ~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 394 QFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred HHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 9999999999988999999999971 34667899999999886
No 91
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.79 E-value=4.6e-19 Score=203.67 Aligned_cols=134 Identities=25% Similarity=0.403 Sum_probs=110.5
Q ss_pred CCCHHHHHHHHHHcCCCCC---CC---HHHHHHHHHHHHHHcCCCcc-ccccccCccCcccChHHHHHHHHHHHHHhCC-
Q 007952 80 HLTVKETLTYAALLRLPNT---LT---KQQKEKRAIDVINELGLERC-QDTMIGGSFVRGVSGGERKRVCIGNEIIINP- 151 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~~~---~~---~~~~~~~v~~~l~~lgL~~~-~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p- 151 (583)
.+||.|++.|...+.++.. .. .++..+++ +.++.+||... .+. .+.+|||||||||.||++|..+|
T Consensus 451 ~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l~ldR-----~~~tLSGGEkQRV~LA~aL~~~~~ 524 (972)
T 2r6f_A 451 AMSVTEALAFFDGLELTEKEAQIARLILREIRDRL-GFLQNVGLDYLTLSR-----SAGTLSGGEAQRIRLATQIGSRLT 524 (972)
T ss_dssp TSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHHH-HHHHHHTCTTSBSSS-----BGGGCCHHHHHHHHHHHHHTTCCC
T ss_pred hCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHhhhCCCCccccCC-----ccccCCHHHHHHHHHHHHHhhCCC
Confidence 6899999999776654321 00 02344555 45899999753 343 46799999999999999999985
Q ss_pred -CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEE------cCCeEEEEcChhhHH
Q 007952 152 -SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL------GKGSLLYFGKASEAM 221 (583)
Q Consensus 152 -~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~ 221 (583)
++|+|||||+|||+.....+++.|++|++.|.|||+++|++. . .+.||+|++| ++|++++.|+++++.
T Consensus 525 ~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~-~-i~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~ 599 (972)
T 2r6f_A 525 GVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDED-T-MLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 599 (972)
T ss_dssp SCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHH-H-HHSCSEEEEECSSSGGGCCSEEEEECTTTTT
T ss_pred CCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-H-HHhCCEEEEeCCCccCCCCEEEEecCHHHHH
Confidence 999999999999999999999999999888999999999963 3 4679999999 789999999998764
No 92
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.77 E-value=7.1e-19 Score=202.84 Aligned_cols=133 Identities=22% Similarity=0.366 Sum_probs=109.7
Q ss_pred CCCCCHHHHHHHHHHcCCCCCCCH----------HHHHHHHHHHHHHcCCCcc-ccccccCccCcccChHHHHHHHHHHH
Q 007952 78 FPHLTVKETLTYAALLRLPNTLTK----------QQKEKRAIDVINELGLERC-QDTMIGGSFVRGVSGGERKRVCIGNE 146 (583)
Q Consensus 78 ~~~lTv~e~l~~~~~~~~~~~~~~----------~~~~~~v~~~l~~lgL~~~-~~~~ig~~~~~~LSgGerqRv~ia~~ 146 (583)
+..+||.|.+.|...+. ++. ++..+++ +.++.+||... .+ +.+.+|||||||||.||++
T Consensus 466 ~~~ltV~e~l~f~enl~----l~~~~~~i~~~i~~ei~~Rl-~~L~~vGL~~l~l~-----r~~~tLSGGEkQRV~LA~a 535 (993)
T 2ygr_A 466 VCELSIADCADFLNALT----LGPREQAIAGQVLKEIRSRL-GFLLDVGLEYLSLS-----RAAATLSGGEAQRIRLATQ 535 (993)
T ss_dssp SSHHHHHHHHHTTTTTT----SCHHHHHHHHHHHHHHHHHH-HHHHHHTGGGSCTT-----CBGGGCCHHHHHHHHHHHH
T ss_pred HhhCCHHHHHHHHHhcC----CCHHHhHHHHHHHHHHHHHH-HHHhhCCCCccccC-----CCcccCCHHHHHHHHHHHH
Confidence 44589999999854433 233 3344555 45788999753 34 3467999999999999999
Q ss_pred HHhC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEE------cCCeEEEEcChh
Q 007952 147 IIIN--PSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL------GKGSLLYFGKAS 218 (583)
Q Consensus 147 L~~~--p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L------~~G~iv~~G~~~ 218 (583)
|..+ |++|+|||||+|||+.....+++.|++|++.|.|||+++|++. ..+.||+|++| ++|++++.|+++
T Consensus 536 L~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~--~i~~ADrIi~Lgp~aG~~gG~iv~~G~~~ 613 (993)
T 2ygr_A 536 IGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDED--TIEHADWIVDIGPGAGEHGGRIVHSGPYD 613 (993)
T ss_dssp HTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHHTCSEEEEECSSSGGGCCSCCEEECHH
T ss_pred HhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCHH--HHHhCCEEEEecCccccCCCEEEEeeCHH
Confidence 9999 5899999999999999999999999999989999999999964 35689999999 789999999998
Q ss_pred hHHH
Q 007952 219 EAMA 222 (583)
Q Consensus 219 ~~~~ 222 (583)
++.+
T Consensus 614 e~~~ 617 (993)
T 2ygr_A 614 ELLR 617 (993)
T ss_dssp HHHH
T ss_pred Hhhh
Confidence 8754
No 93
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.77 E-value=6.6e-20 Score=184.55 Aligned_cols=132 Identities=20% Similarity=0.315 Sum_probs=99.3
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCc-ccEEEECCccCCccccccEEEEccCCCCCCCCCHHHH
Q 007952 8 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTV-GGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKET 86 (583)
Q Consensus 8 ~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~-~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~ 86 (583)
.+|+|+| +++|++++|+||||||||||+++|+|... +. +|+|.++|.++....+..+++++|.
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~--~~~~G~I~~~g~~i~~~~~~~~~~v~q~------------ 78 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN--QTKSYHIITIEDPIEYVFKHKKSIVNQR------------ 78 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHH--HHCCCEEEEEESSCCSCCCCSSSEEEEE------------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCC--CCCCCEEEEcCCcceeecCCcceeeeHH------------
Confidence 5899999 99999999999999999999999999652 44 7999999987532111112222221
Q ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHH
Q 007952 87 LTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDST 166 (583)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~ 166 (583)
.+|++. ..+ |++||++|..+|+++++|||| |+.
T Consensus 79 ---------------------------~~gl~~-----------~~l------~~~la~aL~~~p~illlDEp~---D~~ 111 (261)
T 2eyu_A 79 ---------------------------EVGEDT-----------KSF------ADALRAALREDPDVIFVGEMR---DLE 111 (261)
T ss_dssp ---------------------------EBTTTB-----------SCH------HHHHHHHHHHCCSEEEESCCC---SHH
T ss_pred ---------------------------HhCCCH-----------HHH------HHHHHHHHhhCCCEEEeCCCC---CHH
Confidence 223321 122 899999999999999999999 988
Q ss_pred HHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcC
Q 007952 167 TALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 208 (583)
Q Consensus 167 ~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~ 208 (583)
+...++ +. ++.|.+|++++|+++ ..+.+|+++.|..
T Consensus 112 ~~~~~l---~~-~~~g~~vl~t~H~~~--~~~~~dri~~l~~ 147 (261)
T 2eyu_A 112 TVETAL---RA-AETGHLVFGTLHTNT--AIDTIHRIVDIFP 147 (261)
T ss_dssp HHHHHH---HH-HHTTCEEEEEECCSS--HHHHHHHHHHTSC
T ss_pred HHHHHH---HH-HccCCEEEEEeCcch--HHHHHHHHhhhcC
Confidence 866544 33 456999999999965 4678999988854
No 94
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.77 E-value=2.1e-20 Score=185.44 Aligned_cols=169 Identities=15% Similarity=0.124 Sum_probs=107.7
Q ss_pred eeece-EEEEeCCeEEEEECCCCCcHHHHHHHHh--CCCCCCCcccEEEECCccCCcc---ccccEEEEccCCCCCCCCC
Q 007952 9 ILNGI-TGSVNPGEVLALMGPSGSGKTTLLNLLS--GRLMEPTVGGSITYNDHPYSKS---LKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 9 iL~~v-s~~i~~Ge~~~i~G~nGaGKSTLl~~l~--g~~~~~~~~G~I~~~g~~~~~~---~~~~i~yv~Q~~~~~~~lT 82 (583)
.|+++ .+.+++|++++|+||||||||||+++|+ |... +.+|.+.+++...... ..+.++|++|+....+.++
T Consensus 18 ~lD~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 95 (251)
T 2ehv_A 18 GFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEE--YGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIA 95 (251)
T ss_dssp TTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHH--HCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEE
T ss_pred hHHHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh--CCCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEE
Confidence 34444 2489999999999999999999999999 5312 2356777777654321 2345677777654445555
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCC
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 162 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsg 162 (583)
+.++....... ........ ....+.++..+......-..+|+++++||||++
T Consensus 96 ~~~~~~~~~~~----------~~~~~~~~------------------~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ 147 (251)
T 2ehv_A 96 IVDGVSSVVGL----------PSEEKFVL------------------EDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSI 147 (251)
T ss_dssp EEC-----------------------------------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHH
T ss_pred EEEcccccccc----------ccccceec------------------cCcccHHHHHHHHHHHHHhhCCCEEEEccHHHH
Confidence 54433221000 00000000 012234444444444444689999999999999
Q ss_pred CC-----HHHHHHHHHHHHHHHHCCcEEEEEecCCChH--------HHhhc-CeEEEEc
Q 007952 163 LD-----STTALRIVQMLQDIAEAGKTVVTTIHQPSSR--------LFHKF-DKLILLG 207 (583)
Q Consensus 163 LD-----~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~--------i~~~~-D~v~~L~ 207 (583)
|| +..+..+.++++.++++|+|||+++|++... +..+| |++++|+
T Consensus 148 ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~ 206 (251)
T 2ehv_A 148 ALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred HhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCCcccccccChhhEeeeEEEEEe
Confidence 97 6777779999999988899999999997542 15788 9999995
No 95
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.77 E-value=7.2e-19 Score=161.62 Aligned_cols=82 Identities=27% Similarity=0.333 Sum_probs=73.7
Q ss_pred CccCcccChHHHHHHHHH------HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhc
Q 007952 127 GSFVRGVSGGERKRVCIG------NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKF 200 (583)
Q Consensus 127 ~~~~~~LSgGerqRv~ia------~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~ 200 (583)
+..+.+||||||||++|| ++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++ ++.+.|
T Consensus 52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~--~~~~~~ 129 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAA 129 (148)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGC
T ss_pred cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH--HHHHhC
Confidence 345789999999999886 899999999999999999999999999999999987799999999996 367899
Q ss_pred CeEEEE--cCCe
Q 007952 201 DKLILL--GKGS 210 (583)
Q Consensus 201 D~v~~L--~~G~ 210 (583)
|++++| .+|.
T Consensus 130 d~ii~l~~~~g~ 141 (148)
T 1f2t_B 130 DHVIRISLENGS 141 (148)
T ss_dssp SEEEEEEEETTE
T ss_pred CEEEEEEcCCCe
Confidence 999999 4564
No 96
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.77 E-value=3.8e-20 Score=217.21 Aligned_cols=161 Identities=17% Similarity=0.143 Sum_probs=115.2
Q ss_pred cccceeeceEEEEeC-------CeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEE-EEccCCC
Q 007952 5 EEKDILNGITGSVNP-------GEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIG-FVTQDDV 76 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~-------Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~-yv~Q~~~ 76 (583)
+++.+++|+++.+++ |++++|+||||||||||||+| |... . ..++| ||||+..
T Consensus 767 ~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~--~----------------~aqiG~~Vpq~~~ 827 (1022)
T 2o8b_B 767 GDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLA--V----------------MAQMGCYVPAEVC 827 (1022)
T ss_dssp CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHH--H----------------HHTTTCCEESSEE
T ss_pred CCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHH--H----------------HhheeEEeccCcC
Confidence 456799999999987 999999999999999999999 8542 1 12355 9999763
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEE
Q 007952 77 LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFL 156 (583)
Q Consensus 77 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illL 156 (583)
.+||.|++. ..+|+.+.... ....+|+++++ +++|++++++|++++|
T Consensus 828 ---~l~v~d~I~------------------------~rig~~d~~~~-----~~stf~~em~~-~a~al~la~~~sLlLL 874 (1022)
T 2o8b_B 828 ---RLTPIDRVF------------------------TRLGASDRIMS-----GESTFFVELSE-TASILMHATAHSLVLV 874 (1022)
T ss_dssp ---EECCCSBEE------------------------EECC--------------CHHHHHHHH-HHHHHHHCCTTCEEEE
T ss_pred ---CCCHHHHHH------------------------HHcCCHHHHhh-----chhhhHHHHHH-HHHHHHhCCCCcEEEE
Confidence 456655441 11222221111 12467777665 9999999999999999
Q ss_pred eCCCCCCCHHHH-HHHHHHHHHHHHC-CcEEEEEecCCChHHHhhcCeEEEEcCCeEE--EEcChhh
Q 007952 157 DEPTSGLDSTTA-LRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLL--YFGKASE 219 (583)
Q Consensus 157 DEPtsgLD~~~~-~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv--~~G~~~~ 219 (583)
||||+|+|+... ..+.+.|+.++++ |.++|++||++. .+...+|++.++ +|++. +.|++++
T Consensus 875 DEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~e-l~~~~~d~~~v~-~g~~~~~~~~~~~~ 939 (1022)
T 2o8b_B 875 DELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHS-LVEDYSQNVAVR-LGHMACMVENECED 939 (1022)
T ss_dssp ECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHH-HHHHTSSCSSEE-EEEEEEC-------
T ss_pred ECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHH-HHHHhCCcceee-cCeEEEEEecCccc
Confidence 999999999885 5578999999876 999999999964 455678998887 58877 5565543
No 97
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.77 E-value=4.8e-20 Score=192.76 Aligned_cols=178 Identities=15% Similarity=0.173 Sum_probs=129.6
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-----------cccccEEEEccC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-----------SLKSKIGFVTQD 74 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-----------~~~~~i~yv~Q~ 74 (583)
+..+|+++ +++.+||+++|+||||||||||+++|+|... ++.|.|.+.|++..+ .+++.+.++.|.
T Consensus 58 g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~--~~~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~~ 134 (347)
T 2obl_A 58 GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGAS--ADIIVLALIGERGREVNEFLALLPQSTLSKCVLVVTTS 134 (347)
T ss_dssp SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSC--CSEEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEECT
T ss_pred CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCC--CCEEEEEEecccHHHHHHHHHhhhhhhhhceEEEEECC
Confidence 46789999 9999999999999999999999999999653 567999998875211 134557888875
Q ss_pred CCCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEE
Q 007952 75 DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLL 154 (583)
Q Consensus 75 ~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~il 154 (583)
+. +..+.+.-... .....+.....+ .+.. +--..+..+|+|| ||+++| +.+|++
T Consensus 135 ~~-----~~~~r~~~~~~------------~~~~ae~~~~~~-~~vl---~~ld~~~~lS~g~-r~v~la---l~~p~~- 188 (347)
T 2obl_A 135 DR-----PALERMKAAFT------------ATTIAEYFRDQG-KNVL---LMMDSVTRYARAA-RDVGLA---SGEPDV- 188 (347)
T ss_dssp TS-----CHHHHHHHHHH------------HHHHHHHHHTTT-CEEE---EEEETHHHHHHHH-HHHHHH---TTCCCC-
T ss_pred CC-----CHHHHHHHHHH------------HHHHHHHHHhcc-ccHH---HHHhhHHHHHHHH-HHHHHH---cCCCCc-
Confidence 42 23333221100 000111211111 1110 0002356899999 899999 688887
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHH--CCc-----EEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhH
Q 007952 155 FLDEPTSGLDSTTALRIVQMLQDIAE--AGK-----TVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 220 (583)
Q Consensus 155 lLDEPtsgLD~~~~~~i~~~l~~l~~--~g~-----tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 220 (583)
|+|||+....++.++++++.+ +|. ||++++||.+ ...||+++++.+|+++..|++++.
T Consensus 189 -----t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~---~~i~d~v~~i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 189 -----RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN---DPIGDEVRSILDGHIVLTRELAEE 253 (347)
T ss_dssp -----BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC---CHHHHHHHHHCSEEEEBCHHHHTT
T ss_pred -----ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC---ChhhhheEEeeCcEEEEeCCHHHc
Confidence 999999999999999999874 477 8999999976 357999999999999999988765
No 98
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.77 E-value=6.4e-20 Score=179.59 Aligned_cols=153 Identities=23% Similarity=0.239 Sum_probs=97.7
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCC-----cccEEEECCccCCccccccEEEEccCCCCCCCCCHHHHHHH
Q 007952 15 GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT-----VGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTY 89 (583)
Q Consensus 15 ~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~-----~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~l~~ 89 (583)
+-+++||+++|+||||||||||+++|+|....++ .+|.+++++.+.. ..+.+++++|+..+++. |+.||+.+
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~--~~~~i~~~~~~~~~~~~-~~~~~~~~ 96 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF--RPERIREIAQNRGLDPD-EVLKHIYV 96 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCC--CHHHHHHHHHHTTSCHH-HHHHTEEE
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCC--CHHHHHHHHHHcCCCHH-HHhhcEEE
Confidence 5799999999999999999999999999543322 2346666665321 01223444444333322 33333221
Q ss_pred HHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHH-HHHHHHHHHHHh-------CCCEEEEeCCCC
Q 007952 90 AALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE-RKRVCIGNEIII-------NPSLLFLDEPTS 161 (583)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGe-rqRv~ia~~L~~-------~p~illLDEPts 161 (583)
....++++ ++++..+.+++. +|+++++||||+
T Consensus 97 ----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~ 136 (231)
T 4a74_A 97 ----------------------------------------ARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTS 136 (231)
T ss_dssp ----------------------------------------EECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSH
T ss_pred ----------------------------------------EecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHH
Confidence 11223333 333555555555 899999999999
Q ss_pred CCCHH-------H-----HHHHHHHHHHHHHC-CcEEEEEecCCC---hHHHhhcCeEEEEcCCe
Q 007952 162 GLDST-------T-----ALRIVQMLQDIAEA-GKTVVTTIHQPS---SRLFHKFDKLILLGKGS 210 (583)
Q Consensus 162 gLD~~-------~-----~~~i~~~l~~l~~~-g~tii~~~H~~~---~~i~~~~D~v~~L~~G~ 210 (583)
++|+. . ..++++.|++++++ |+|||+++|... ..+...+|+++.|++|+
T Consensus 137 ~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 137 HFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp HHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred HhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 99984 2 23788888888654 999999999532 13667899999998753
No 99
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.73 E-value=1.5e-18 Score=200.89 Aligned_cols=146 Identities=16% Similarity=0.180 Sum_probs=101.0
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHH
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVK 84 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~ 84 (583)
+++.|++|+|+++++|++++|+||||||||||||++++... ....| ..+... ...++. -+.++..+.+.
T Consensus 658 ~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~-~aq~g------~~vpa~-~~~i~~---~d~i~~~ig~~ 726 (918)
T 3thx_B 658 QDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITI-MAQIG------SYVPAE-EATIGI---VDGIFTRMGAA 726 (918)
T ss_dssp CSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHH-HHHHT------CCBSSS-EEEEEC---CSEEEEEC---
T ss_pred CCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHH-HhhcC------ccccch-hhhhhH---HHHHHHhCChH
Confidence 35789999999999999999999999999999999986321 00111 001000 011121 11122222221
Q ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCC
Q 007952 85 ETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLD 164 (583)
Q Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD 164 (583)
++ ... ....+|+||+|++.|+++ +++|++++|||||+|||
T Consensus 727 d~----------------------------------l~~-----~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD 766 (918)
T 3thx_B 727 DN----------------------------------IYK-----GRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTS 766 (918)
T ss_dssp ----------------------------------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSC
T ss_pred HH----------------------------------HHH-----hHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCC
Confidence 11 111 134789999999999998 89999999999999999
Q ss_pred HHHHHHHH-HHHHHHHH-CCcEEEEEecCCChHHHhhcCeE
Q 007952 165 STTALRIV-QMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKL 203 (583)
Q Consensus 165 ~~~~~~i~-~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v 203 (583)
+.....+. .+++.+++ .|+|+|++||++. +.+++|+.
T Consensus 767 ~~~~~~i~~~il~~L~~~~g~tvl~vTH~~e--l~~l~~~~ 805 (918)
T 3thx_B 767 THDGIAIAYATLEYFIRDVKSLTLFVTHYPP--VCELEKNY 805 (918)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEEeCcHH--HHHHHhhc
Confidence 99999997 77888865 5999999999953 45667653
No 100
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.72 E-value=6.6e-19 Score=200.97 Aligned_cols=135 Identities=19% Similarity=0.209 Sum_probs=101.6
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHH
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVK 84 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~ 84 (583)
+++.+++|+|++ |++++|+||||||||||||+|+|... .+..|.+. . ..+..+++++| +++.+++.
T Consensus 564 ~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~-~~~~G~~v------p-a~~~~i~~v~~---i~~~~~~~ 629 (765)
T 1ewq_A 564 RTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIAL-LAQVGSFV------P-AEEAHLPLFDG---IYTRIGAS 629 (765)
T ss_dssp TSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHH-HHTTTCCB------S-SSEEEECCCSE---EEEECCC-
T ss_pred CCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhh-hcccCcee------e-hhccceeeHHH---hhccCCHH
Confidence 346789999999 99999999999999999999999532 12345431 1 12345788776 55556665
Q ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHH--HhCCCEEEEeCC---
Q 007952 85 ETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEI--IINPSLLFLDEP--- 159 (583)
Q Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L--~~~p~illLDEP--- 159 (583)
|++. .++|+|+++++.+++++ +++|++++||||
T Consensus 630 d~l~------------------------------------------~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrG 667 (765)
T 1ewq_A 630 DDLA------------------------------------------GGKSTFMVEMEEVALILKEATENSLVLLDEVGRG 667 (765)
T ss_dssp -----------------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTT
T ss_pred HHHH------------------------------------------hcccHHHHHHHHHHHHHHhccCCCEEEEECCCCC
Confidence 5431 14789999999999999 999999999999
Q ss_pred CCCCCHHHH-HHHHHHHHHHHHCCcEEEEEecCCChHHHhhc
Q 007952 160 TSGLDSTTA-LRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKF 200 (583)
Q Consensus 160 tsgLD~~~~-~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~ 200 (583)
|++||..+. ..+++.|++ .|.|+|++||++. +.+++
T Consensus 668 Ts~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~~--l~~~~ 704 (765)
T 1ewq_A 668 TSSLDGVAIATAVAEALHE---RRAYTLFATHYFE--LTALG 704 (765)
T ss_dssp SCHHHHHHHHHHHHHHHHH---HTCEEEEECCCHH--HHTCC
T ss_pred CCCcCHHHHHHHHHHHHHh---CCCEEEEEeCCHH--HHHhh
Confidence 999999875 578888766 5899999999953 44444
No 101
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.72 E-value=1e-20 Score=183.53 Aligned_cols=145 Identities=19% Similarity=0.202 Sum_probs=113.6
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCC--CCCCHHHHHHHHHHcC
Q 007952 17 VNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLF--PHLTVKETLTYAALLR 94 (583)
Q Consensus 17 i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~--~~lTv~e~l~~~~~~~ 94 (583)
.++|++++|+||||||||||+++|+|.+. + .++|++|++.++ +.+|++++..+.. .
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~--~------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~--~ 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLG--E------------------RVALLPMDHYYKDLGHLPLEERLRVNY--D 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHG--G------------------GEEEEEGGGCBCCCTTSCHHHHHHSCT--T
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhC--C------------------CeEEEecCccccCcccccHHHhcCCCC--C
Confidence 57899999999999999999999999541 1 589999998776 5689998865431 1
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHH----HHHHHHHHHHhCCCEEEEeCCCCC-------C
Q 007952 95 LPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER----KRVCIGNEIIINPSLLFLDEPTSG-------L 163 (583)
Q Consensus 95 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGer----qRv~ia~~L~~~p~illLDEPtsg-------L 163 (583)
.+. ....+++.+.++.+++.+..+. ++..+|+||+ ||++++++++.+|+++++||||++ |
T Consensus 61 ~~~----~~~~~~~~~~l~~~~~~~~~~~-----~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~l 131 (211)
T 3asz_A 61 HPD----AFDLALYLEHAQALLRGLPVEM-----PVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFV 131 (211)
T ss_dssp SGG----GBCHHHHHHHHHHHHTTCCEEE-----CCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEE
T ss_pred Chh----hhhHHHHHHHHHHHHcCCCcCC-----CcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEE
Confidence 111 1223456777888887665443 3467999964 688999999999999999999999 9
Q ss_pred CHHHHHHHHHHHHHH-HHCCcEEEEEecCC
Q 007952 164 DSTTALRIVQMLQDI-AEAGKTVVTTIHQP 192 (583)
Q Consensus 164 D~~~~~~i~~~l~~l-~~~g~tii~~~H~~ 192 (583)
|+.....+.+.+++. +++|+|++.++|+.
T Consensus 132 d~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 132 DADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp ECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred eCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 999999999999886 45699999999974
No 102
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.71 E-value=3.9e-19 Score=186.33 Aligned_cols=165 Identities=22% Similarity=0.199 Sum_probs=103.7
Q ss_pred eeece-EEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcc----cE-EEECCccCCccccccEEEEccCCCCCCCCC
Q 007952 9 ILNGI-TGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVG----GS-ITYNDHPYSKSLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 9 iL~~v-s~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~----G~-I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lT 82 (583)
.|+++ ++.+++|++++|+||||||||||++.+++....++.+ |+ |++++.+.. .++++++++|+..+++. +
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~--~~~~i~~i~q~~~~~~~-~ 195 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF--RPERIREIAQNRGLDPD-E 195 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC--CHHHHHHHHHTTTCCHH-H
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC--CHHHHHHHHHHcCCCHH-H
Confidence 35555 6899999999999999999999999999965323333 67 888886541 23456677776655443 4
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHH-------hCCCEEE
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEII-------INPSLLF 155 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~-------~~p~ill 155 (583)
+.||+.+.. ... |.+++|++.++++++ .+|++++
T Consensus 196 v~~ni~~~~------~~~---------------------------------~~~~~~~l~~~~~~~~~lS~G~~~~~llI 236 (349)
T 1pzn_A 196 VLKHIYVAR------AFN---------------------------------SNHQMLLVQQAEDKIKELLNTDRPVKLLI 236 (349)
T ss_dssp HGGGEEEEE------CCS---------------------------------HHHHHHHHHHHHHHHHHSSSSSSCEEEEE
T ss_pred HhhCEEEEe------cCC---------------------------------hHHHHHHHHHHHHHHHHhccccCCCCEEE
Confidence 544443210 001 334455555555554 6899999
Q ss_pred EeCCCCCCCHHH------------HHHHHHHHHHHHH-CCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcC
Q 007952 156 LDEPTSGLDSTT------------ALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 216 (583)
Q Consensus 156 LDEPtsgLD~~~------------~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 216 (583)
+||||+++|+.. ..++++.|+++++ .|+|||+++|... .....++.......|+++.++.
T Consensus 237 lDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~-~~~~~~~~~~~~~~G~~l~~~~ 309 (349)
T 1pzn_A 237 VDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA-RPDAFFGDPTRPIGGHILAHSA 309 (349)
T ss_dssp EETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC----------------CCCCCTTC
T ss_pred EeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc-ccccccCCccccCCcceEeecC
Confidence 999999999862 4567777777765 4899999999854 3333445555566666655544
No 103
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.71 E-value=1.1e-18 Score=179.32 Aligned_cols=147 Identities=16% Similarity=0.163 Sum_probs=108.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCcc--------c--cccEEEEccCCCCCCCCCHHHHHH
Q 007952 19 PGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS--------L--KSKIGFVTQDDVLFPHLTVKETLT 88 (583)
Q Consensus 19 ~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~--------~--~~~i~yv~Q~~~~~~~lTv~e~l~ 88 (583)
+|++++|+||||||||||++.|+|.+. +.+|+|.++|.+..+. + +..++|++|+..++|.+||+|++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~--~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~ 178 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ--NLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQ 178 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH--TTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH--hcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHH
Confidence 699999999999999999999999764 4689999999886421 1 346899999999999999999998
Q ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHH
Q 007952 89 YAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTA 168 (583)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~~~ 168 (583)
++..... ...+++..|+.+..+ +-++..++||++|||+++.+|+.++| .||+.+.
T Consensus 179 ~~~~~~~------------d~~llDt~G~~~~~~--------~~~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~ 233 (304)
T 1rj9_A 179 AMKARGY------------DLLFVDTAGRLHTKH--------NLMEELKKVKRAIAKADPEEPKEVWL-----VLDAVTG 233 (304)
T ss_dssp HHHHHTC------------SEEEECCCCCCTTCH--------HHHHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBC
T ss_pred HHHhCCC------------CEEEecCCCCCCchH--------HHHHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHH
Confidence 6532100 001223334433221 23455569999999999999995544 5666666
Q ss_pred HHHHHHHHHHHHC-CcEEEEEecCC
Q 007952 169 LRIVQMLQDIAEA-GKTVVTTIHQP 192 (583)
Q Consensus 169 ~~i~~~l~~l~~~-g~tii~~~H~~ 192 (583)
.++++.++++.+. |.|+|++||+.
T Consensus 234 ~~~~~~~~~~~~~~~~t~iivTh~d 258 (304)
T 1rj9_A 234 QNGLEQAKKFHEAVGLTGVIVTKLD 258 (304)
T ss_dssp THHHHHHHHHHHHHCCSEEEEECTT
T ss_pred HHHHHHHHHHHHHcCCcEEEEECCc
Confidence 6777778887654 89999999984
No 104
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.70 E-value=1.7e-19 Score=185.35 Aligned_cols=158 Identities=16% Similarity=0.167 Sum_probs=86.9
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCcc-ccccEEEEccCCCCCCCCC
Q 007952 4 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS-LKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 4 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~-~~~~i~yv~Q~~~~~~~lT 82 (583)
.+++.++++++++| +|+||||||||||++.|.|... .+.+| |.++|.++... ..+.+++++|++.....+|
T Consensus 8 ~~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~-~~~~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~lt 79 (301)
T 2qnr_A 8 VHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDL-YPERV-ISGAAEKIERTVQIEASTVEIEERGVKLRLT 79 (301)
T ss_dssp ----------CEEE------EEEEETTSSHHHHHHHHHC--------------------------CEEEEC---CCEEEE
T ss_pred ECCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCc-cCCCC-cccCCcccCCcceEeeEEEEecCCCcccCcc
Confidence 45678999999998 9999999999999999999522 24678 88888765432 2356899999988888899
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCC-
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS- 161 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPts- 161 (583)
|.|+..++.... ..+.....++.+.+. .+. +.+++|||||||+.+|++++ ++++||||+
T Consensus 80 v~Dt~g~~~~~~-----~~e~~~~l~~~l~~~------~~~-----~~~~~sgg~rqrv~~ara~~----ll~ldePt~~ 139 (301)
T 2qnr_A 80 VVDTPGYGDAIN-----CRDCFKTIISYIDEQ------FER-----YLHDESGLNRRHIIDNRVHC----CFYFISPFGH 139 (301)
T ss_dssp EEEEC----------------CTTHHHHHHHH------HHH-----HHHHHTSSCCTTCCCCCCCE----EEEEECSSSS
T ss_pred hhhhhhhhhhcC-----cHHHHHHHHHHHHHH------HHH-----HHHHhCHHhhhhhhhhhhhh----eeeeecCccc
Confidence 999887753221 000111112222111 122 35789999999999888875 999999998
Q ss_pred CCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCC
Q 007952 162 GLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPS 193 (583)
Q Consensus 162 gLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~ 193 (583)
|||+... +.++++.++ +.++|++.||..
T Consensus 140 ~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 140 GLKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp SCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred CCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 5999873 566666544 788999999964
No 105
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.70 E-value=2.6e-18 Score=197.16 Aligned_cols=158 Identities=17% Similarity=0.132 Sum_probs=110.2
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHH
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVK 84 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~ 84 (583)
+++.+++|+|++ ++|++++|+||||||||||||+|+|.... ...| ..+.. .+..++++.| +++.+++.
T Consensus 593 ~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~-~q~G------~~vpa-~~~~i~~~~~---i~~~~~~~ 660 (800)
T 1wb9_A 593 NEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALM-AYIG------SYVPA-QKVEIGPIDR---IFTRVGAA 660 (800)
T ss_dssp SSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHH-HTTT------CCBSS-SEEEECCCCE---EEEEEC--
T ss_pred CCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHH-HhcC------cccch-hcccceeHHH---HHhhCCHH
Confidence 356799999999 99999999999999999999999984311 1112 11211 1234666655 55556666
Q ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCC
Q 007952 85 ETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLD 164 (583)
Q Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD 164 (583)
|++... ...+|+|+++ ++.+...+++|++++||||++|+|
T Consensus 661 d~l~~~---------------------------------------~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd 700 (800)
T 1wb9_A 661 DDLASG---------------------------------------RSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTS 700 (800)
T ss_dssp ------------------------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSS
T ss_pred HHHHhh---------------------------------------hhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCC
Confidence 554221 1135666654 455556789999999999999999
Q ss_pred HHHHHHH-HHHHHHHHH-CCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcC
Q 007952 165 STTALRI-VQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 216 (583)
Q Consensus 165 ~~~~~~i-~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~ 216 (583)
+.....+ .+.++.+++ .|.++|++||++. +.+++|++..+.+|++.+...
T Consensus 701 ~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~e--l~~l~d~~~~v~n~~~~~~~~ 752 (800)
T 1wb9_A 701 TYDGLSLAWACAENLANKIKALTLFATHYFE--LTQLPEKMEGVANVHLDALEH 752 (800)
T ss_dssp SSHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHHSTTEEEEEEEEEEE
T ss_pred hhHHHHHHHHHHHHHHhccCCeEEEEeCCHH--HHHHhhhhhceEEEEEEEEEc
Confidence 9877775 788888887 4999999999964 457889887778888766544
No 106
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.69 E-value=4.6e-18 Score=166.23 Aligned_cols=167 Identities=16% Similarity=0.148 Sum_probs=109.7
Q ss_pred cceeeceEE-EEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-ccc---ccEEEEccCCCCCCCC
Q 007952 7 KDILNGITG-SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-SLK---SKIGFVTQDDVLFPHL 81 (583)
Q Consensus 7 ~~iL~~vs~-~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-~~~---~~i~yv~Q~~~~~~~l 81 (583)
.+.|+++.+ .+++|++++|+||||||||||++.|++... +.+|.|.+.+.+... ... ..+++.+|+.... .+
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 85 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGL--RDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEK-KL 85 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHH--HHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTT-TE
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHH--HCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhC-CE
Confidence 456888885 899999999999999999999999998542 345666654433221 000 0111111110000 00
Q ss_pred CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCC--EEEEeCC
Q 007952 82 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPS--LLFLDEP 159 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~--illLDEP 159 (583)
++ ++.....++ . .. .....|.+|.++...+.....+|+ ++++|||
T Consensus 86 ~~------------------------~~~~~~~~~-~----~~----~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~ 132 (235)
T 2w0m_A 86 II------------------------IDALMKEKE-D----QW----SLVNLTPEELVNKVIEAKQKLGYGKARLVIDSV 132 (235)
T ss_dssp EE------------------------EECCC-----C----TT----BCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETG
T ss_pred EE------------------------EeccccccC-c----ee----eecCCCHHHHHHHHHHHHHhhCCCceEEEEECc
Confidence 00 000000000 0 00 112459999998888888788999 9999999
Q ss_pred CCCC--CHHHHHHHHHHHHHHHH-CCcEEEEEecCCC-------hHHHhhcCeEEEEcCC
Q 007952 160 TSGL--DSTTALRIVQMLQDIAE-AGKTVVTTIHQPS-------SRLFHKFDKLILLGKG 209 (583)
Q Consensus 160 tsgL--D~~~~~~i~~~l~~l~~-~g~tii~~~H~~~-------~~i~~~~D~v~~L~~G 209 (583)
|+++ |+....++++.|+++++ .|.|||+++|+.. ..+.+.||++++|++.
T Consensus 133 ~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 133 SALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp GGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred hHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 9887 99999999999999975 5999999999972 3377889999999764
No 107
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.68 E-value=5.4e-19 Score=169.31 Aligned_cols=156 Identities=15% Similarity=0.163 Sum_probs=103.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc--cccccEEEEccCCCCCCCCCHHHHHHHHHHcCCCC
Q 007952 20 GEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPN 97 (583)
Q Consensus 20 Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~--~~~~~i~yv~Q~~~~~~~lTv~e~l~~~~~~~~~~ 97 (583)
|++++|+||||||||||+++|+|.+. .+| |.++|.+... ..++.+||++|+. ... ++++ +.+..
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~---~~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~---~~~l---~~~~~-- 66 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK---SSG-VPVDGFYTEEVRQGGRRIGFDVVTL--SGT---RGPL---SRVGL-- 66 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH---HTT-CCCEEEECCEEETTSSEEEEEEEET--TSC---EEEE---EECCC--
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc---cCC-EEEcCEecchhHhhhceEEEEEEec--ccc---eehh---hcccc--
Confidence 78999999999999999999999652 578 9998876642 3567899999975 111 1111 01100
Q ss_pred CCCHHHHHHHHHHHHHHcCCCc-cccccccCccCcccChHHHHHH-HHHH---HHHhCCCEEEEeC--CCCCCCHHHHHH
Q 007952 98 TLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGERKRV-CIGN---EIIINPSLLFLDE--PTSGLDSTTALR 170 (583)
Q Consensus 98 ~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~LSgGerqRv-~ia~---~L~~~p~illLDE--PtsgLD~~~~~~ 170 (583)
+.++ ..+..+| .+...+|+|||+++ ++++ |+..+|+++++|| |+..+|......
T Consensus 67 ------------------~~~~~~~~~~v~-~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~ 127 (189)
T 2i3b_A 67 ------------------EPPPGKRECRVG-QYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQA 127 (189)
T ss_dssp ------------------CCCSSSCCEESS-SSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHH
T ss_pred ------------------cCCccccccccc-eEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHH
Confidence 1111 0111233 23457999999988 4444 5789999999999 899999875444
Q ss_pred HHHHHHHHHHCCcEEEE----EecCCChHHHhhcCeEEEEcCCeEEEEc
Q 007952 171 IVQMLQDIAEAGKTVVT----TIHQPSSRLFHKFDKLILLGKGSLLYFG 215 (583)
Q Consensus 171 i~~~l~~l~~~g~tii~----~~H~~~~~i~~~~D~v~~L~~G~iv~~G 215 (583)
|+++.+..+++|+ ++|+.+ ..+.|+|..+.+|+++...
T Consensus 128 ----l~~~l~~~~~~ilgti~vsh~~~---~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 128 ----VRQTLSTPGTIILGTIPVPKGKP---LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp ----HHHHHHCSSCCEEEECCCCCSSC---CTTHHHHHTTCCSEEEECC
T ss_pred ----HHHHHhCCCcEEEEEeecCCCCc---hHHHHHHeecCCcEEEEeC
Confidence 4444444555553 238853 2456777777888887654
No 108
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.67 E-value=1.8e-16 Score=160.78 Aligned_cols=152 Identities=17% Similarity=0.213 Sum_probs=106.3
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHHHHHHHHHcC
Q 007952 15 GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLR 94 (583)
Q Consensus 15 ~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~l~~~~~~~ 94 (583)
.-+++|++++|+||||||||||++.+++... .|++. .|.+... ...+.|+..++.. ..+.+.+. .+.
T Consensus 25 ggl~~G~i~~i~G~~GsGKTtl~~~l~~~~~----~g~~~-~g~~~~~--~~~v~~~~~e~~~---~~~~~r~~---~~g 91 (279)
T 1nlf_A 25 PNMVAGTVGALVSPGGAGKSMLALQLAAQIA----GGPDL-LEVGELP--TGPVIYLPAEDPP---TAIHHRLH---ALG 91 (279)
T ss_dssp TTEETTSEEEEEESTTSSHHHHHHHHHHHHH----TCCCT-TCCCCCC--CCCEEEEESSSCH---HHHHHHHH---HHH
T ss_pred CCccCCCEEEEEcCCCCCHHHHHHHHHHHHh----cCCCc-CCCccCC--CccEEEEECCCCH---HHHHHHHH---HHH
Confidence 3589999999999999999999999998432 45553 3443321 3468888776532 01222221 111
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCC--CCCHHHH---H
Q 007952 95 LPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS--GLDSTTA---L 169 (583)
Q Consensus 95 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPts--gLD~~~~---~ 169 (583)
..... ...+++++.+++.+..+. .+..+|+||+|++ ++++.+|+++++||||+ ++|.... .
T Consensus 92 --~~~~~----~~~~~~~~~l~l~~~~~~-----~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~ 157 (279)
T 1nlf_A 92 --AHLSA----EERQAVADGLLIQPLIGS-----LPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMA 157 (279)
T ss_dssp --TTSCH----HHHHHHHHHEEECCCTTS-----CCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHH
T ss_pred --hhcCh----hhhhhccCceEEeecCCC-----CcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHH
Confidence 11121 235667788888765443 4578999998875 68889999999999999 9998544 8
Q ss_pred HHHHHHHHHHH-CCcEEEEEecCCC
Q 007952 170 RIVQMLQDIAE-AGKTVVTTIHQPS 193 (583)
Q Consensus 170 ~i~~~l~~l~~-~g~tii~~~H~~~ 193 (583)
++++.|+++++ .|+|||+++|+..
T Consensus 158 ~~~~~L~~l~~~~g~tvi~i~H~~~ 182 (279)
T 1nlf_A 158 QVIGRMEAIAADTGCSIVFLHHASK 182 (279)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEEC--
T ss_pred HHHHHHHHHHHHcCCEEEEEecCCC
Confidence 88899999864 5999999999853
No 109
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.66 E-value=2.2e-18 Score=193.30 Aligned_cols=169 Identities=15% Similarity=0.210 Sum_probs=112.5
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCC-------ccccccEEEEccCCCCCCCCCHHHHH
Q 007952 15 GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-------KSLKSKIGFVTQDDVLFPHLTVKETL 87 (583)
Q Consensus 15 ~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~-------~~~~~~i~yv~Q~~~~~~~lTv~e~l 87 (583)
++++. +||+|||||||||||++|+|.. .|..+|+|.++|.++. ..+++.++|++|+..+++.+||+|++
T Consensus 43 l~lp~---iaIvG~nGsGKSTLL~~I~Gl~-~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i 118 (608)
T 3szr_A 43 LALPA---IAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEI 118 (608)
T ss_dssp CCCCC---EECCCCTTSCHHHHHHHHHSCC--------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTH
T ss_pred ccCCe---EEEECCCCChHHHHHHHHhCCC-CCCCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHH
Confidence 45543 9999999999999999999974 3336899999998742 24567899999999999999999999
Q ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCC------CC
Q 007952 88 TYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEP------TS 161 (583)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEP------ts 161 (583)
.++...... ...+++. +++.++.+...+|+++++||| |+
T Consensus 119 ~~~~~~~~~----------------~~~~~s~-------------------~~i~l~i~~~~~p~LlLlDePGi~~~~t~ 163 (608)
T 3szr_A 119 NKAQNAIAG----------------EGMGISH-------------------ELITLEISSRDVPDLTLIDLPGITRVAVG 163 (608)
T ss_dssp HHHHHHHHC----------------SSSCCCS-------------------CCEEEEEEESSSCCEEEEECCC------C
T ss_pred HHHHHHhcC----------------Cccccch-------------------HHHHHHhcCCCCCceeEeeCCCccccccC
Confidence 875321100 0001110 111111222348999999999 99
Q ss_pred CCCHHHHHHHHHHHHHHHHC--CcEEEEEecCCCh------HHHhh-----cCeEEEEcCCeEEEEcChhhHHH
Q 007952 162 GLDSTTALRIVQMLQDIAEA--GKTVVTTIHQPSS------RLFHK-----FDKLILLGKGSLLYFGKASEAMA 222 (583)
Q Consensus 162 gLD~~~~~~i~~~l~~l~~~--g~tii~~~H~~~~------~i~~~-----~D~v~~L~~G~iv~~G~~~~~~~ 222 (583)
|||+..+.++.++++++.++ +.++++++|+... .+.+. ...|.++.++..+..|+.+++.+
T Consensus 164 ~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dlv~~g~~~~~~~ 237 (608)
T 3szr_A 164 NQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLVDKGTEDKVVD 237 (608)
T ss_dssp CSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGGSSSSSTTCCCC
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhhcCcccHHHHHH
Confidence 99999999999999997543 6788899998652 12222 24578889988888887655443
No 110
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.66 E-value=1.7e-17 Score=173.95 Aligned_cols=128 Identities=26% Similarity=0.330 Sum_probs=91.7
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHHHHHHHHHcCC
Q 007952 16 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRL 95 (583)
Q Consensus 16 ~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~l~~~~~~~~ 95 (583)
...+|++++|+|||||||||||++|+|.+. +..+|.|...+.++....+...++++|.......+|..
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~-~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~----------- 186 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLN-NTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFS----------- 186 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHH-HHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHH-----------
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhccc-CCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHH-----------
Confidence 678899999999999999999999999653 22257776655554333333445555543222111111
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 007952 96 PNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQML 175 (583)
Q Consensus 96 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l 175 (583)
+ +||++|..+|++|++|||| |..+ .+.+
T Consensus 187 -----------------------------------------~----~La~aL~~~PdvillDEp~---d~e~----~~~~ 214 (356)
T 3jvv_A 187 -----------------------------------------E----ALRSALREDPDIILVGEMR---DLET----IRLA 214 (356)
T ss_dssp -----------------------------------------H----HHHHHTTSCCSEEEESCCC---SHHH----HHHH
T ss_pred -----------------------------------------H----HHHHHhhhCcCEEecCCCC---CHHH----HHHH
Confidence 1 9999999999999999999 6555 4444
Q ss_pred HHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCC
Q 007952 176 QDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKG 209 (583)
Q Consensus 176 ~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G 209 (583)
.++++.|+||++|+|+.+. + +.+||++.|..|
T Consensus 215 ~~~~~~G~~vl~t~H~~~~-~-~~~dRli~l~~~ 246 (356)
T 3jvv_A 215 LTAAETGHLVFGTLHTTSA-A-KTIDRVVDVFPA 246 (356)
T ss_dssp HHHHHTTCEEEEEESCSSH-H-HHHHHHHHTSCH
T ss_pred HHHHhcCCEEEEEEccChH-H-HHHHHHhhhcCc
Confidence 4556779999999999764 4 789999888654
No 111
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.62 E-value=6.5e-20 Score=174.91 Aligned_cols=169 Identities=12% Similarity=0.061 Sum_probs=113.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCC
Q 007952 20 GEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTL 99 (583)
Q Consensus 20 Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~l~~~~~~~~~~~~ 99 (583)
|++++|+||||||||||+++|++ +.+|++.++|.++.+. ...++++|.....+..|+++++.+.+...
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~-----~~~g~~~i~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 69 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA-----QLDNSAYIEGDIINHM--VVGGYRPPWESDELLALTWKNITDLTVNF----- 69 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH-----HSSSEEEEEHHHHHTT--CCTTCCCGGGCHHHHHHHHHHHHHHHHHH-----
T ss_pred CeEEEEECCCCCcHHHHHHHHhc-----ccCCeEEEcccchhhh--hccccccCccchhHHHHHHHHHHHHHHHH-----
Confidence 78999999999999999999997 2368999998765322 23567777654455567888877643211
Q ss_pred CHHHHHHHHHHHHHHcCCCccccccccC---ccCccc--ChHHHHHHHHHH------HHHhCCCEEEEeCCCCCCCHHHH
Q 007952 100 TKQQKEKRAIDVINELGLERCQDTMIGG---SFVRGV--SGGERKRVCIGN------EIIINPSLLFLDEPTSGLDSTTA 168 (583)
Q Consensus 100 ~~~~~~~~v~~~l~~lgL~~~~~~~ig~---~~~~~L--SgGerqRv~ia~------~L~~~p~illLDEPtsgLD~~~~ 168 (583)
.. -+-....+...+. ...+.+ |+|++|++.++. +++.+|+...+|| +||+...
T Consensus 70 ------------~~-~~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~ 133 (189)
T 2bdt_A 70 ------------LL-AQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCL 133 (189)
T ss_dssp ------------HH-TTCEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGG
T ss_pred ------------Hh-cCCcEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHH
Confidence 00 0100011110000 012345 899998988888 9999999888884 8999888
Q ss_pred HHHHHHHHHHHHCCcEEEEEecC-CChHHHhhcCeEEEEcCCeEEEEcChhhH
Q 007952 169 LRIVQMLQDIAEAGKTVVTTIHQ-PSSRLFHKFDKLILLGKGSLLYFGKASEA 220 (583)
Q Consensus 169 ~~i~~~l~~l~~~g~tii~~~H~-~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 220 (583)
.. .+.++.+.+.+.++|.++|+ +. ++.+.||+|+ ++|+++..|+++-+
T Consensus 134 ~~-~~~~~~~~~~~~~ii~tsh~~~~-~~e~~~~~i~--~~g~~~~~~~~~~~ 182 (189)
T 2bdt_A 134 EL-VEEFESKGIDERYFYNTSHLQPT-NLNDIVKNLK--TNPRFIFCMAGDPL 182 (189)
T ss_dssp HH-HHHHHHTTCCTTSEEECSSSCGG-GHHHHHHHHH--HCGGGSCC------
T ss_pred HH-HHHHhhcCCCccEEEeCCCCChh-hHHHHHHHHh--hCCcEEEeecCCch
Confidence 88 88888876667899999998 65 4778999998 99999999988754
No 112
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.61 E-value=1.6e-17 Score=162.84 Aligned_cols=149 Identities=17% Similarity=0.207 Sum_probs=101.2
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCC-CcccEEEECCccCCccccccEEEEccCCCCCCCCCH----HHHHH
Q 007952 14 TGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTV----KETLT 88 (583)
Q Consensus 14 s~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~-~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv----~e~l~ 88 (583)
.-..++|++++|+||||||||||+|+|+|..+ + ...|.|.+++.+.....++.++|++|++..|+.+|+ .|++.
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~-p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~ 88 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQP-LYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAE 88 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHSC-TTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEE
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccCC-CCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHH
Confidence 45678999999999999999999999999653 2 368999999887654445678999997654443333 11111
Q ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHH
Q 007952 89 YAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTA 168 (583)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~~~ 168 (583)
+ .|+ ..+.| +++ +.+++..+++++|| ||+.++
T Consensus 89 ~-----------------------------------~~~--~yg~~---~~~---v~~~l~~G~illLD-----LD~~~~ 120 (219)
T 1s96_A 89 V-----------------------------------FGN--YYGTS---REA---IEQVLATGVDVFLD-----IDWQGA 120 (219)
T ss_dssp E-----------------------------------TTE--EEEEE---HHH---HHHHHTTTCEEEEE-----CCHHHH
T ss_pred H-----------------------------------Hhc--cCCCC---HHH---HHHHHhcCCeEEEE-----ECHHHH
Confidence 0 000 01112 222 34566678999999 999999
Q ss_pred HHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHHHHH
Q 007952 169 LRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFS 225 (583)
Q Consensus 169 ~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~ 225 (583)
.++.+.+. +++||++++|++.. +.+ |+ +++| .++++++...+.
T Consensus 121 ~~i~~~l~----~~~tI~i~th~~~~-l~~---Rl--~~rG----~~~~e~i~~rl~ 163 (219)
T 1s96_A 121 QQIRQKMP----HARSIFILPPSKIE-LDR---RL--RGRG----QDSEEVIAKRMA 163 (219)
T ss_dssp HHHHHHCT----TCEEEEEECSSHHH-HHH---HH--HTTS----CSCHHHHHHHHH
T ss_pred HHHHHHcc----CCEEEEEECCCHHH-HHH---HH--HHcC----CCCHHHHHHHHH
Confidence 99999876 58999999999643 333 43 6777 577877776554
No 113
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.59 E-value=7.3e-16 Score=149.59 Aligned_cols=155 Identities=19% Similarity=0.177 Sum_probs=100.6
Q ss_pred cceeeceE-EEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHH
Q 007952 7 KDILNGIT-GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 85 (583)
Q Consensus 7 ~~iL~~vs-~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e 85 (583)
.+.|+++. +-+++|++++|+||||||||||++.|++ . ...+.+ |+..++. .+..+
T Consensus 6 ~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~--~~~~v~----------------~i~~~~~----~~~~~ 61 (220)
T 2cvh_A 6 TKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--L--SGKKVA----------------YVDTEGG----FSPER 61 (220)
T ss_dssp CHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--H--HCSEEE----------------EEESSCC----CCHHH
T ss_pred cHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--H--cCCcEE----------------EEECCCC----CCHHH
Confidence 34567766 4899999999999999999999999998 1 112223 3333221 11111
Q ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHH--HHHHHHHHHHHhC-CCEEEEeCCCCC
Q 007952 86 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE--RKRVCIGNEIIIN-PSLLFLDEPTSG 162 (583)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGe--rqRv~ia~~L~~~-p~illLDEPtsg 162 (583)
-....... .... +++++.+. +...|+++ ++++..+++++.+ |+++++||||++
T Consensus 62 ~~~~~~~~----~~~~-------~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~ 117 (220)
T 2cvh_A 62 LVQMAETR----GLNP-------EEALSRFI-------------LFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAH 117 (220)
T ss_dssp HHHHHHTT----TCCH-------HHHHHHEE-------------EECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCC
T ss_pred HHHHHHhc----CCCh-------HHHhhcEE-------------EEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHH
Confidence 11111000 1111 11222221 12445554 5678888899876 999999999999
Q ss_pred CCHHH--------HHHHHHHHHHHHHC-CcEEEEEecCCCh------------HHHhhcCeEEEEcCC
Q 007952 163 LDSTT--------ALRIVQMLQDIAEA-GKTVVTTIHQPSS------------RLFHKFDKLILLGKG 209 (583)
Q Consensus 163 LD~~~--------~~~i~~~l~~l~~~-g~tii~~~H~~~~------------~i~~~~D~v~~L~~G 209 (583)
+|+.. ..++++.|++++++ |.|||+++|.... .+.+.||.+++|++.
T Consensus 118 l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 118 YRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp TTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred hhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 99743 25566778888764 8999999998542 466789999999754
No 114
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.58 E-value=9.5e-17 Score=171.48 Aligned_cols=153 Identities=15% Similarity=0.172 Sum_probs=92.1
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCH
Q 007952 4 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTV 83 (583)
Q Consensus 4 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv 83 (583)
.+.+.+++|+||+| +|+||||||||||+|+|+|.....+..|.+.+++.+ ....+.+++++|++.+++.+||
T Consensus 21 y~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~--t~~~~~i~~v~q~~~~~~~Ltv 92 (418)
T 2qag_C 21 VYRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKK--TVQVEQSKVLIKEGGVQLLLTI 92 (418)
T ss_dssp TTTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-------CCEEEEEECC------CEEEEE
T ss_pred ECCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCcc--ceeeeeEEEEEecCCcccceee
Confidence 35678999999998 999999999999999999965321212222222111 1123568999999988888999
Q ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCC---EEEEeCCC
Q 007952 84 KETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPS---LLFLDEPT 160 (583)
Q Consensus 84 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~---illLDEPt 160 (583)
.||+.+..... ..+..+.+.+.++ ..++.+++||+.||++++.+|+ ++++||||
T Consensus 93 ~Dt~g~~~~~~------~~~~~~~i~~~i~-----------------~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt 149 (418)
T 2qag_C 93 VDTPGFGDAVD------NSNCWQPVIDYID-----------------SKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPS 149 (418)
T ss_dssp EECC-----------------CHHHHHHHH-----------------HHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-
T ss_pred eechhhhhhcc------chhhHHHHHHHHH-----------------HHHHHHHHHHHHHHHHhccCCCeeEEEEEecCc
Confidence 99987753211 1111111212121 1466788889999999999999 99999999
Q ss_pred -CCCCHHHHHHHHHHHHHHHHCCcEEEEEecCC
Q 007952 161 -SGLDSTTALRIVQMLQDIAEAGKTVVTTIHQP 192 (583)
Q Consensus 161 -sgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~ 192 (583)
+|||+... +.++++.+ +.+||+++|..
T Consensus 150 ~~~L~~~d~----~~lk~L~~-~v~iIlVinK~ 177 (418)
T 2qag_C 150 GHGLKPLDI----EFMKRLHE-KVNIIPLIAKA 177 (418)
T ss_dssp CCSCCHHHH----HHHHHHTT-TSEEEEEEEST
T ss_pred ccCCCHHHH----HHHHHHhc-cCcEEEEEEcc
Confidence 69998873 44555544 77888888763
No 115
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.57 E-value=1.4e-14 Score=136.52 Aligned_cols=91 Identities=18% Similarity=0.295 Sum_probs=73.4
Q ss_pred cCcccChHHHHHHHHHHHHHh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEE
Q 007952 129 FVRGVSGGERKRVCIGNEIII----NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLI 204 (583)
Q Consensus 129 ~~~~LSgGerqRv~ia~~L~~----~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~ 204 (583)
.+..||||||||++||++|+. +|++++|||||+|||+.+...+.+.|+++++ +.++|+++|+. ...+.+|+++
T Consensus 61 ~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~-~~~~ivith~~--~~~~~ad~i~ 137 (173)
T 3kta_B 61 RIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK-ESQFIVITLRD--VMMANADKII 137 (173)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSCH--HHHTTCSEEE
T ss_pred ccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc-CCEEEEEEecH--HHHHhCCEEE
Confidence 457899999999999999974 4699999999999999999999999999875 46889999984 4578999998
Q ss_pred EEc--CCeE-EEEcChhhHHH
Q 007952 205 LLG--KGSL-LYFGKASEAMA 222 (583)
Q Consensus 205 ~L~--~G~i-v~~G~~~~~~~ 222 (583)
.+. +|.. +...+.++..+
T Consensus 138 ~v~~~~g~s~~~~~~~~~~~~ 158 (173)
T 3kta_B 138 GVSMRDGVSKVVSLSLEKAMK 158 (173)
T ss_dssp EEEEETTEEEEEECCHHHHHH
T ss_pred EEEecCCEEEEEEEEcHHHHH
Confidence 664 6643 34444444433
No 116
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.55 E-value=7.1e-17 Score=155.59 Aligned_cols=165 Identities=15% Similarity=0.080 Sum_probs=94.8
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCC---CCcccEEEECCccCCccccccEEEEccCCCC----CCC
Q 007952 8 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME---PTVGGSITYNDHPYSKSLKSKIGFVTQDDVL----FPH 80 (583)
Q Consensus 8 ~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~---~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~----~~~ 80 (583)
.++++ +.+++|+.++|+|+||||||||+|.|+|.... .+..|++.+.+.-. ....+-.+ +.+.+ .+.
T Consensus 16 ~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~---~~~~~~l~-Dt~G~~~~~~~~ 89 (210)
T 1pui_A 16 PDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFE---VADGKRLV-DLPGYGYAEVPE 89 (210)
T ss_dssp SSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEE---EETTEEEE-ECCCCC------
T ss_pred CCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEE---ecCCEEEE-ECcCCcccccCH
Confidence 57777 88999999999999999999999999996410 23456554322100 00011111 00110 000
Q ss_pred CC---HHHHHHHHHHc-CC----------CCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHH-HHHHH
Q 007952 81 LT---VKETLTYAALL-RL----------PNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR-VCIGN 145 (583)
Q Consensus 81 lT---v~e~l~~~~~~-~~----------~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqR-v~ia~ 145 (583)
-. .+..+...... +. ....+. ..+.+.+.++..++.... ++ .....+|+||||| +..++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~---v~-nK~D~~s~~~~~~~~~~~~ 163 (210)
T 1pui_A 90 EMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKD--LDQQMIEWAVDSNIAVLV---LL-TKADKLASGARKAQLNMVR 163 (210)
T ss_dssp CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCH--HHHHHHHHHHHTTCCEEE---EE-ECGGGSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCch--hHHHHHHHHHHcCCCeEE---EE-ecccCCCchhHHHHHHHHH
Confidence 00 11122211110 00 011121 223455666666665321 11 1245799999999 89999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcE
Q 007952 146 EIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKT 184 (583)
Q Consensus 146 ~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~t 184 (583)
+++.+|+.+++|||||++|.....++++.|.++.++|.|
T Consensus 164 ~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~ 202 (210)
T 1pui_A 164 EAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP 202 (210)
T ss_dssp HHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred HHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence 999999999999999999999999999999998766644
No 117
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.54 E-value=1e-15 Score=161.76 Aligned_cols=130 Identities=20% Similarity=0.314 Sum_probs=97.8
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCc-ccEEEECCccCCccccccEEEEccCCCCCCCCCHHHHH
Q 007952 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTV-GGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETL 87 (583)
Q Consensus 9 iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~-~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~l 87 (583)
+|++++ +++|++++|+||||||||||+++|+|... +. +|+|.+.|.++....++.++||+|..
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~--~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~------------ 190 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN--QTKSYHIITIEDPIEYVFKHKKSIVNQRE------------ 190 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHH--HHSCCEEEEEESSCCSCCCCSSSEEEEEE------------
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcC--cCCCcEEEEecccHhhhhccCceEEEeee------------
Confidence 566665 78999999999999999999999999653 34 79998877766434566788888841
Q ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 007952 88 TYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTT 167 (583)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~~ 167 (583)
+|+. +..+ +.+|+++|..+|+++++|||+ |+.+
T Consensus 191 ---------------------------~g~~-----------~~~~------~~~l~~~L~~~pd~illdE~~---d~e~ 223 (372)
T 2ewv_A 191 ---------------------------VGED-----------TKSF------ADALRAALREDPDVIFVGEMR---DLET 223 (372)
T ss_dssp ---------------------------BTTT-----------BSCS------HHHHHHHTTSCCSEEEESCCC---SHHH
T ss_pred ---------------------------cCCC-----------HHHH------HHHHHHHhhhCcCEEEECCCC---CHHH
Confidence 2221 1134 459999999999999999999 7766
Q ss_pred HHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEc
Q 007952 168 ALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG 207 (583)
Q Consensus 168 ~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~ 207 (583)
... .++. ++.|.+|+.++|+.+ +.+.+|+++.|.
T Consensus 224 ~~~---~l~~-~~~g~~vi~t~H~~~--~~~~~~rl~~l~ 257 (372)
T 2ewv_A 224 VET---ALRA-AETGHLVFGTLHTNT--AIDTIHRIVDIF 257 (372)
T ss_dssp HHH---HHHH-HTTTCEEEECCCCCS--HHHHHHHHHHTS
T ss_pred HHH---HHHH-HhcCCEEEEEECcch--HHHHHHHHHHhc
Confidence 443 3443 356899999999954 567888887664
No 118
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.52 E-value=1.6e-15 Score=144.15 Aligned_cols=153 Identities=12% Similarity=0.016 Sum_probs=97.2
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCcc--ccccEEEEccCCCCCCCCCHHHHHHHHHHc
Q 007952 16 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS--LKSKIGFVTQDDVLFPHLTVKETLTYAALL 93 (583)
Q Consensus 16 ~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~--~~~~i~yv~Q~~~~~~~lTv~e~l~~~~~~ 93 (583)
.+++|++++|+||||||||||+++|+|. +..|.|.++|.++... .++.++|++|+.. +.+||.|++.+.+..
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~----~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~ 78 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL----PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAGR 78 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC----SSSCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc----cCCCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHHH
Confidence 4789999999999999999999999995 2469999999865321 2234678887644 457889988765321
Q ss_pred CCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHH
Q 007952 94 RLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ 173 (583)
Q Consensus 94 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~~~~~i~~ 173 (583)
...... ...++.+++..++...... +..+..+|+|++||+.++|++..+|+++ +|+.....+.+
T Consensus 79 ~~~~~~-----~~~~~~~~~~~~l~~~~~~---~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~ 142 (191)
T 1zp6_A 79 YAKEGY-----FVILDGVVRPDWLPAFTAL---ARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHS 142 (191)
T ss_dssp HHHTSC-----EEEECSCCCTTTTHHHHTT---CSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHH
T ss_pred HhccCC-----eEEEeccCcHHHHHHHHhc---CCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHH
Confidence 100000 0000111111112111100 1124579999999999999999999876 68888888777
Q ss_pred HHHHHHHCCcEEEEEec
Q 007952 174 MLQDIAEAGKTVVTTIH 190 (583)
Q Consensus 174 ~l~~l~~~g~tii~~~H 190 (583)
.++.+.+.+..+|.++|
T Consensus 143 ~~~~l~~~~~~~i~t~~ 159 (191)
T 1zp6_A 143 QFADLGAFEHHVLPVSG 159 (191)
T ss_dssp HTTCCGGGGGGEEECTT
T ss_pred HHhccCcccccEEECCC
Confidence 77665433334444443
No 119
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.52 E-value=3.1e-15 Score=156.23 Aligned_cols=124 Identities=20% Similarity=0.213 Sum_probs=88.8
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEEC-CccCCccccccEEEEccCCCCCCCCCHHHH
Q 007952 8 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN-DHPYSKSLKSKIGFVTQDDVLFPHLTVKET 86 (583)
Q Consensus 8 ~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~-g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~ 86 (583)
.-+++++.. .+|++++|+||||||||||+|+|+|.... +.+|+|.++ |.......++.+++++|+..++++.||+|+
T Consensus 204 ~gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~-~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e~ 281 (358)
T 2rcn_A 204 DGLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNE-ILTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVREF 281 (358)
T ss_dssp BTHHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSC-CCCC-------------CCCEEEECTTSCEEEECHHHHTC
T ss_pred cCHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccc-cccCCccccCCCCccceEEEEEEEECCCCEecCcccHHHh
Confidence 345666664 47999999999999999999999996531 468999987 765433345679999999999999999984
Q ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHH
Q 007952 87 LTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEI 147 (583)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L 147 (583)
- + ...+.++..+++.++++.+|+.+..+.. +.++| ||+||++||+++
T Consensus 282 ~-------l-~~l~~~e~~~~~~e~l~~~gl~~f~~~~-----~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 282 G-------L-WHLEPEQITQGFVEFHDYLGHCKYRDCK-----HDADP-GCAIREAVENGA 328 (358)
T ss_dssp C-------C-CCCCHHHHHHTSGGGGGGTTCSSSTTCC-----SSSCT-TCHHHHHHHHTS
T ss_pred h-------h-cCCCHHHHHHHHHHHHHHcCCchhcCCC-----cccCC-HHHHHHHHHhcC
Confidence 1 1 1345666777788999999998776653 56899 999999999764
No 120
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.52 E-value=4.8e-16 Score=165.57 Aligned_cols=171 Identities=12% Similarity=0.145 Sum_probs=111.8
Q ss_pred cccceeeceEEEEeCCeE--EEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCC
Q 007952 5 EEKDILNGITGSVNPGEV--LALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~--~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lT 82 (583)
++++ |+++|+++++|++ ++|+||||||||||+|+|+|... .|.-. .... ....++.++|++|++.+++.+|
T Consensus 26 ~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l----~g~~~-~~~~-~~~~~~~i~~v~Q~~~l~~~lt 98 (427)
T 2qag_B 26 DSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF----EGEPA-THTQ-PGVQLQSNTYDLQESNVRLKLT 98 (427)
T ss_dssp C--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC------------CC-SSCEEEEEEEEEEC--CEEEEE
T ss_pred CCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc----cCCcC-CCCC-ccceEeeEEEEeecCccccccc
Confidence 3445 9999999999999 99999999999999999999632 22211 1100 1123457999999999888999
Q ss_pred HHHHHHHHHHcCCCCCCCHH--------HHHHHHHHHHHHc-CCCc----ccccc----cc--CccCcccChHHHHHHHH
Q 007952 83 VKETLTYAALLRLPNTLTKQ--------QKEKRAIDVINEL-GLER----CQDTM----IG--GSFVRGVSGGERKRVCI 143 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~--------~~~~~v~~~l~~l-gL~~----~~~~~----ig--~~~~~~LSgGerqRv~i 143 (583)
|.||+.++.. .... ...+..++.++.. ++.. ..++. +. .....+++-.+ +.|
T Consensus 99 v~D~~~~g~~------~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---iei 169 (427)
T 2qag_B 99 IVSTVGFGDQ------INKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVT 169 (427)
T ss_dssp EEEEECCCC-------CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---HHH
T ss_pred hhhhhhhhhc------cccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---HHH
Confidence 9999866421 1211 1233455566554 4431 11221 10 01113566666 789
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH-HHHCCcEEEEEecC
Q 007952 144 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD-IAEAGKTVVTTIHQ 191 (583)
Q Consensus 144 a~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~-l~~~g~tii~~~H~ 191 (583)
+++|..+++++++|||+..|.+.....+.+.+++ +...|.+|+.++.+
T Consensus 170 lk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 170 MKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp HHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred HHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 9999999999999999999999999999999986 87789999888754
No 121
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.52 E-value=1.6e-17 Score=165.39 Aligned_cols=153 Identities=16% Similarity=0.207 Sum_probs=102.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHh---CCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHHHHHHHHHcCC
Q 007952 19 PGEVLALMGPSGSGKTTLLNLLS---GRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRL 95 (583)
Q Consensus 19 ~Ge~~~i~G~nGaGKSTLl~~l~---g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~l~~~~~~~~ 95 (583)
++++++|+||||||||||+++|+ |... +..|+|.++|.+........+.+++|+..+++..|+.|++........
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~--~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~~ 103 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQH--LSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENRR 103 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCC--EEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTCT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeE--ecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence 47899999999999999999999 9542 567998887765432333445667888888888899999987532100
Q ss_pred -----CCCCCHHHHHHHHHHHHH--HcCCCccc-------cccccCccCcccChHHHHHHHHHHHH-HhCCCEEEEe---
Q 007952 96 -----PNTLTKQQKEKRAIDVIN--ELGLERCQ-------DTMIGGSFVRGVSGGERKRVCIGNEI-IINPSLLFLD--- 157 (583)
Q Consensus 96 -----~~~~~~~~~~~~v~~~l~--~lgL~~~~-------~~~ig~~~~~~LSgGerqRv~ia~~L-~~~p~illLD--- 157 (583)
-...+... .+++.+.+ ..++--.. -..+.++.+..+|| |+ +++ +.+|++++||
T Consensus 104 ~~~~il~g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~~ 174 (246)
T 2bbw_A 104 GQHWLLDGFPRTL--GQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDVT 174 (246)
T ss_dssp TSCEEEESCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCTTT
T ss_pred CCeEEEECCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCccccccccc
Confidence 00111111 11222221 11200000 01112334567998 55 677 8999999999
Q ss_pred -CCCCCCCHHHHHHHHHHHHHHHHCC
Q 007952 158 -EPTSGLDSTTALRIVQMLQDIAEAG 182 (583)
Q Consensus 158 -EPtsgLD~~~~~~i~~~l~~l~~~g 182 (583)
|||+|||..+...+.+.++++.+++
T Consensus 175 ~EP~~~ld~~~~~~i~~~l~~~~~~~ 200 (246)
T 2bbw_A 175 GEPLVQQEDDKPEAVAARLRQYKDVA 200 (246)
T ss_dssp CCBCBCCGGGSHHHHHHHHHHHHHHH
T ss_pred ccccccCCCCcHHHHHHHHHHHHHhH
Confidence 9999999999999999999987654
No 122
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.50 E-value=1e-17 Score=176.69 Aligned_cols=162 Identities=13% Similarity=0.107 Sum_probs=100.0
Q ss_pred eeeceEEEEeC--CeEEEEECCCCCcHHHHHHHHhCCCCCCCcc----cEEEEC----CccCC---ccccccEEEEccCC
Q 007952 9 ILNGITGSVNP--GEVLALMGPSGSGKTTLLNLLSGRLMEPTVG----GSITYN----DHPYS---KSLKSKIGFVTQDD 75 (583)
Q Consensus 9 iL~~vs~~i~~--Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~----G~I~~~----g~~~~---~~~~~~i~yv~Q~~ 75 (583)
+.+.|++++++ |+.++|+||||||||||+++|+|... +.+ |+|.++ |.+.. ..+ +.|++++|+.
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~--~~~~~e~G~i~i~~~~~~~~~~~~~~~~-~~I~~~~q~~ 233 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFN--TTSAWEYGREFVFEKLGGDEQAMQYSDY-PQMALGHQRY 233 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTT--CEEECCTTHHHHHHSSSSCTTSSCTTTH-HHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhC--CCcchhhHHHHHHhhcCCCcccCChhHH-HHHHHHHHHH
Confidence 45779999999 99999999999999999999999653 456 776653 22110 000 1122222211
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHH-hCCCEE
Q 007952 76 VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEII-INPSLL 154 (583)
Q Consensus 76 ~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~-~~p~il 154 (583)
.+++ .|+.||+.+ ++ .+..++ .+..+|+|++||..+++++. .+|+++
T Consensus 234 ~~~~-~t~~~nl~~-------------------------~~-~~~~~~-----~~~~~~~~~~~~~~i~~~~~~~~~~ll 281 (365)
T 1lw7_A 234 IDYA-VRHSHKIAF-------------------------ID-TDFITT-----QAFCIQYEGKAHPFLDSMIKEYPFDVT 281 (365)
T ss_dssp HHHH-HHHCSSEEE-------------------------ES-SCHHHH-----HHHHHHHHSCCCHHHHHHHHHSCCSEE
T ss_pred HHHH-HhccCCEEE-------------------------Ee-CCchHH-----HHHHHHHcCCCCHHHHHHHhhcCCCEE
Confidence 1000 111111100 00 011111 12356777888888888775 599999
Q ss_pred EEeC---CC------CCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhhcCeEEEEc
Q 007952 155 FLDE---PT------SGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLG 207 (583)
Q Consensus 155 lLDE---Pt------sgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~ 207 (583)
+||| |+ .++|...+..+.+.|+++.+ .|.+|++++|. . +..+++|++.+++
T Consensus 282 lLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~-~~~r~~~~i~~i~ 342 (365)
T 1lw7_A 282 ILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-S-YLDRYNQVKAVIE 342 (365)
T ss_dssp EEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-S-HHHHHHHHHHHHH
T ss_pred EECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-C-HHHHHHHHHHHHH
Confidence 9999 65 58999999999999999765 48899999875 3 3456666665553
No 123
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.49 E-value=5.5e-18 Score=175.42 Aligned_cols=162 Identities=18% Similarity=0.118 Sum_probs=104.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhCCCCC------CCcccEEEECCccCCc-------------------cccccEEEE---c
Q 007952 21 EVLALMGPSGSGKTTLLNLLSGRLME------PTVGGSITYNDHPYSK-------------------SLKSKIGFV---T 72 (583)
Q Consensus 21 e~~~i~G~nGaGKSTLl~~l~g~~~~------~~~~G~I~~~g~~~~~-------------------~~~~~i~yv---~ 72 (583)
++++|+|+||||||||+|.|.|.... .++.|+|.++|.++.. .+++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 68999999999999999999986411 2468999999987632 123446777 6
Q ss_pred cCCCCCCCCCHHHHHHHHHHcCCCCCC---CHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHh
Q 007952 73 QDDVLFPHLTVKETLTYAALLRLPNTL---TKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIII 149 (583)
Q Consensus 73 Q~~~~~~~lTv~e~l~~~~~~~~~~~~---~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~ 149 (583)
|+..++++.+|.|+..++........+ +......++++++..+++.+..+.. .++|+||+||+..++.++.
T Consensus 85 q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~------~~ls~g~~Q~~~ad~ill~ 158 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQM------NQFTIAQSQVGYADRILLT 158 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHH------HHCHHHHHHHHTCSEEEEE
T ss_pred hcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHH------hhchHHHHHHHhCCEEEEE
Confidence 776666677887776542100000000 0000000112223334444433332 2689999999988888888
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcC
Q 007952 150 NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFD 201 (583)
Q Consensus 150 ~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D 201 (583)
+|+++ ||| ..+.+.++++. .+.||++++|++.. ...++|
T Consensus 159 k~dl~--de~---------~~l~~~l~~l~-~~~~ii~~sh~~~~-~~~l~~ 197 (318)
T 1nij_A 159 KTDVA--GEA---------EKLHERLARIN-ARAPVYTVTHGDID-LGLLFN 197 (318)
T ss_dssp CTTTC--SCT---------HHHHHHHHHHC-SSSCEEECCSSCCC-GGGGSC
T ss_pred CcccC--CHH---------HHHHHHHHHhC-CCCeEEEecccCCC-HHHHhC
Confidence 99887 888 77888888875 58999999998653 333443
No 124
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.49 E-value=5.7e-15 Score=155.37 Aligned_cols=137 Identities=18% Similarity=0.194 Sum_probs=100.0
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccC-Cc-cccccEEEEc-cCCCCCCCCCHHH
Q 007952 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY-SK-SLKSKIGFVT-QDDVLFPHLTVKE 85 (583)
Q Consensus 9 iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~-~~-~~~~~i~yv~-Q~~~~~~~lTv~e 85 (583)
+++++|+.+++|++++|+||||||||||+|+|+|... +.+|.|.++|..- .. ..++.++|++ |++.+
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~--~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~-------- 233 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIP--FDQRLITIEDVPELFLPDHPNHVHLFYPSEAKE-------- 233 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSC--TTSCEEEEESSSCCCCTTCSSEEEEECC-------------
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCC--CCceEEEECCccccCccccCCEEEEeecCcccc--------
Confidence 4499999999999999999999999999999999653 5789999998532 21 2567789998 65431
Q ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCH
Q 007952 86 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS 165 (583)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~ 165 (583)
+++++..+|-.|+.++..+|+.+++|||+.
T Consensus 234 ----------------------------------------------~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~---- 263 (361)
T 2gza_A 234 ----------------------------------------------EENAPVTAATLLRSCLRMKPTRILLAELRG---- 263 (361)
T ss_dssp ---------------------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS----
T ss_pred ----------------------------------------------ccccccCHHHHHHHHHhcCCCEEEEcCchH----
Confidence 012222355566667777899999999985
Q ss_pred HHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCe
Q 007952 166 TTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 210 (583)
Q Consensus 166 ~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~ 210 (583)
.++.+.++.+.....|++.++|..+ ....+||+..+..|.
T Consensus 264 ---~~~~~~l~~l~~g~~~~l~t~H~~~--~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 264 ---GEAYDFINVAASGHGGSITSCHAGS--CELTFERLALMVLQN 303 (361)
T ss_dssp ---THHHHHHHHHHTTCCSCEEEEECSS--HHHHHHHHHHHHTTS
T ss_pred ---HHHHHHHHHHhcCCCeEEEEECCCC--HHHHHHHHHHHHhcc
Confidence 3456677776554457899999954 567899999888764
No 125
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.46 E-value=7e-14 Score=137.63 Aligned_cols=152 Identities=20% Similarity=0.332 Sum_probs=86.8
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCC-----cccEEEECCccCCccccccEEEEccCCCCCCCCCHHHHHHH
Q 007952 15 GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT-----VGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTY 89 (583)
Q Consensus 15 ~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~-----~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~l~~ 89 (583)
+-+++|++++|+||||||||||++.|++....++ .+|.+++++.+. + ...+....
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~----------------~----~~~~~~~~ 78 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGT----------------F----RPERLLAV 78 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSC----------------C----CHHHHHHH
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCC----------------c----CHHHHHHH
Confidence 5799999999999999999999999998421122 345666665431 0 11111111
Q ss_pred HHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHH-HHHHHHHH--hCCCEEEEeCCCCCCCHH
Q 007952 90 AALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR-VCIGNEII--INPSLLFLDEPTSGLDST 166 (583)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqR-v~ia~~L~--~~p~illLDEPtsgLD~~ 166 (583)
...+. ... +++++.+. .....+..+... +.-+.+++ .+|+++++|||++.+|+.
T Consensus 79 ~~~~g----~~~-------~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~ 135 (243)
T 1n0w_A 79 AERYG----LSG-------SDVLDNVA------------YARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTD 135 (243)
T ss_dssp HHHTT----CCH-------HHHHHTEE------------EEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC--
T ss_pred HHHcC----CCH-------HHHhhCeE------------EEecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHH
Confidence 11110 111 11222111 012344444332 23233343 489999999999999985
Q ss_pred -------H-----HHHHHHHHHHHHHC-CcEEEEEecCCChH------------------HHhhcCeEEEEcCC
Q 007952 167 -------T-----ALRIVQMLQDIAEA-GKTVVTTIHQPSSR------------------LFHKFDKLILLGKG 209 (583)
Q Consensus 167 -------~-----~~~i~~~l~~l~~~-g~tii~~~H~~~~~------------------i~~~~D~v~~L~~G 209 (583)
. ..++++.|++++++ |+|||+++|..... +...||.+++|++|
T Consensus 136 ~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 136 YSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred hcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 3 34566677777654 99999999964321 22278999999865
No 126
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.45 E-value=2.7e-13 Score=143.15 Aligned_cols=77 Identities=26% Similarity=0.379 Sum_probs=67.7
Q ss_pred ccCcccChHHHHHH------HHHHHHHhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhc
Q 007952 128 SFVRGVSGGERKRV------CIGNEIIIN-PSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKF 200 (583)
Q Consensus 128 ~~~~~LSgGerqRv------~ia~~L~~~-p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~ 200 (583)
..+..+|||||||+ ++|+++..+ |++|+|||||+|||+..+..+.+.|+++.+ +.+||++||++. +...+
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~vi~~th~~~--~~~~~ 352 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKS-IPQMIIITHHRE--LEDVA 352 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCS-CSEEEEEESCGG--GGGGC
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhcc-CCeEEEEEChHH--HHhhC
Confidence 34578999999988 557888899 999999999999999999999999998753 568999999973 57889
Q ss_pred CeEEEEc
Q 007952 201 DKLILLG 207 (583)
Q Consensus 201 D~v~~L~ 207 (583)
|++++|+
T Consensus 353 d~~~~l~ 359 (371)
T 3auy_A 353 DVIINVK 359 (371)
T ss_dssp SEEEEEE
T ss_pred CEEEEEE
Confidence 9999997
No 127
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.43 E-value=4.3e-15 Score=137.98 Aligned_cols=78 Identities=18% Similarity=0.131 Sum_probs=66.3
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCcccc-ccEEEEccCCCCCCCCCHH
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK-SKIGFVTQDDVLFPHLTVK 84 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~-~~i~yv~Q~~~~~~~lTv~ 84 (583)
++.+++++|+++++|++++|+||||||||||+|+|+|.+ +.+|+|.++|.++.+... ++ +++|+..++ .+||.
T Consensus 19 ~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l---~~~G~V~~~g~~i~~~~~~~~--~~~q~~~l~-~ltv~ 92 (158)
T 1htw_A 19 KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI---GHQGNVKSPTYTLVEEYNIAG--KMIYHFDLY-RLADP 92 (158)
T ss_dssp HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT---TCCSCCCCCTTTCEEEEEETT--EEEEEEECT-TCSCT
T ss_pred HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC---CCCCeEEECCEeeeeeccCCC--cceeccccc-cCCcH
Confidence 457899999999999999999999999999999999965 358999999988743221 22 899998888 89999
Q ss_pred HHHHH
Q 007952 85 ETLTY 89 (583)
Q Consensus 85 e~l~~ 89 (583)
|++.+
T Consensus 93 e~l~~ 97 (158)
T 1htw_A 93 EELEF 97 (158)
T ss_dssp THHHH
T ss_pred HHHHH
Confidence 99865
No 128
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.43 E-value=9e-15 Score=157.74 Aligned_cols=153 Identities=14% Similarity=0.143 Sum_probs=104.2
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc--------c--ccccEEEEccCCCCCC
Q 007952 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--------S--LKSKIGFVTQDDVLFP 79 (583)
Q Consensus 10 L~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~--------~--~~~~i~yv~Q~~~~~~ 79 (583)
-+++|+++++|++++|+|+||||||||+++|+|.+. +.+|+|.++|.+..+ . .++.++|++|+..+++
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~--~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p 360 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFE--QQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADS 360 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhh--hcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCH
Confidence 368999999999999999999999999999999653 457999998766532 1 2456999999988888
Q ss_pred CCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHH-hCC-CEEEEe
Q 007952 80 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEII-INP-SLLFLD 157 (583)
Q Consensus 80 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~-~~p-~illLD 157 (583)
.+||++++.++..-. .+ . -+++..|..+... .+-.--+|++.+++++. ..| .++|..
T Consensus 361 ~~tV~e~l~~a~~~~----~D------v--VLIDTaGrl~~~~---------~lm~EL~kiv~iar~l~~~~P~evLLvL 419 (503)
T 2yhs_A 361 ASVIFDAIQAAKARN----ID------V--LIADTAGRLQNKS---------HLMEELKKIVRVMKKLDVEAPHEVMLTI 419 (503)
T ss_dssp HHHHHHHHHHHHHTT----CS------E--EEECCCCSCCCHH---------HHHHHHHHHHHHHHTTCTTCSSEEEEEE
T ss_pred HHHHHHHHHHHHhcC----CC------E--EEEeCCCccchhh---------hHHHHHHHHHHHHHHhccCCCCeeEEEe
Confidence 899999998864311 00 0 0122223322111 11122347788888663 457 456555
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecC
Q 007952 158 EPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQ 191 (583)
Q Consensus 158 EPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~ 191 (583)
+||+|.|.. +.++.+.+ -|.|.+++||-
T Consensus 420 DattGq~al------~~ak~f~~~~~itgvIlTKL 448 (503)
T 2yhs_A 420 DASTGQNAV------SQAKLFHEAVGLTGITLTKL 448 (503)
T ss_dssp EGGGTHHHH------HHHHHHHHHTCCSEEEEECG
T ss_pred cCcccHHHH------HHHHHHHhhcCCCEEEEEcC
Confidence 588886554 33455543 48899999993
No 129
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.40 E-value=3.2e-14 Score=147.42 Aligned_cols=142 Identities=15% Similarity=0.122 Sum_probs=98.0
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCcc--------cc--ccEEEEccCCCCCCCCCHHHH
Q 007952 17 VNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS--------LK--SKIGFVTQDDVLFPHLTVKET 86 (583)
Q Consensus 17 i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~--------~~--~~i~yv~Q~~~~~~~lTv~e~ 86 (583)
.++|++++|+||||||||||++.|+|.+. +.+|+|.++|.+..+. ++ ..+.+++|+..+.|.+||+|+
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~--~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~ 203 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLK--NHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDA 203 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH--hcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHH
Confidence 37899999999999999999999999653 5689999999886421 12 236699999999999999999
Q ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHH
Q 007952 87 LTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDST 166 (583)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~ 166 (583)
+.++...... . -+++..|+.+..+. ....|| .+++++..++.+++||.+|.
T Consensus 204 l~~~~~~~~d----------~--vliDtaG~~~~~~~-----l~~eL~-------~i~ral~~de~llvLDa~t~----- 254 (328)
T 3e70_C 204 IQHAKARGID----------V--VLIDTAGRSETNRN-----LMDEMK-------KIARVTKPNLVIFVGDALAG----- 254 (328)
T ss_dssp HHHHHHHTCS----------E--EEEEECCSCCTTTC-----HHHHHH-------HHHHHHCCSEEEEEEEGGGT-----
T ss_pred HHHHHhccch----------h--hHHhhccchhHHHH-----HHHHHH-------HHHHHhcCCCCEEEEecHHH-----
Confidence 9876321100 0 01222333322221 123444 37888887777777774443
Q ss_pred HHHHHHHHHHHHHH-CCcEEEEEecC
Q 007952 167 TALRIVQMLQDIAE-AGKTVVTTIHQ 191 (583)
Q Consensus 167 ~~~~i~~~l~~l~~-~g~tii~~~H~ 191 (583)
.++++.++.+.+ .+.|+|++||.
T Consensus 255 --~~~~~~~~~~~~~~~it~iilTKl 278 (328)
T 3e70_C 255 --NAIVEQARQFNEAVKIDGIILTKL 278 (328)
T ss_dssp --THHHHHHHHHHHHSCCCEEEEECG
T ss_pred --HHHHHHHHHHHHhcCCCEEEEeCc
Confidence 466667777764 48999999995
No 130
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.40 E-value=8.9e-16 Score=160.05 Aligned_cols=162 Identities=16% Similarity=0.230 Sum_probs=108.2
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc--------cccccEEEEccCCCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--------SLKSKIGFVTQDDVL 77 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~--------~~~~~i~yv~Q~~~~ 77 (583)
.+.+|+++|+++++|++++|+||||||||||+|+|+|.+. +.+|+|.+.|.++.. ..+++++|++|++.+
T Consensus 41 ~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~--~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~ 118 (337)
T 2qm8_A 41 VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLT--AAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNA 118 (337)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTE
T ss_pred hHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhh--hCCCEEEEEEEcCcccccccchHHHhhhheeeccCccc
Confidence 3568999999999999999999999999999999999653 468999999876532 235678999999887
Q ss_pred CCCCC------------HHHHHHHHHH-----------------------------cCCCCCCCHHHH---HHHHHHHHH
Q 007952 78 FPHLT------------VKETLTYAAL-----------------------------LRLPNTLTKQQK---EKRAIDVIN 113 (583)
Q Consensus 78 ~~~lT------------v~e~l~~~~~-----------------------------~~~~~~~~~~~~---~~~v~~~l~ 113 (583)
++..+ ++|.+..... +..+. ..++. ++.+.+...
T Consensus 119 ~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~--~~~~~~~i~~~i~~~~~ 196 (337)
T 2qm8_A 119 FIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPG--AGDELQGIKKGIFELAD 196 (337)
T ss_dssp EEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSC--C------CCTTHHHHCS
T ss_pred ccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCC--CcccHHHHHHHHhcccc
Confidence 75321 3333311100 00000 00010 001111111
Q ss_pred HcCCCccccccccCccCcccChHHHHHHHHHHHHHh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 007952 114 ELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIII------NPSLLFLDEPTSGLDSTTALRIVQMLQDIAE 180 (583)
Q Consensus 114 ~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~------~p~illLDEPtsgLD~~~~~~i~~~l~~l~~ 180 (583)
.+.++ ..|. .....+|+|++|++..+++++. +|++++ ||++|.....++.+.|.++.+
T Consensus 197 ivvlN-K~Dl----~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 197 MIAVN-KADD----GDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp EEEEE-CCST----TCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHHH
T ss_pred EEEEE-chhc----cCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHHH
Confidence 22221 1121 1124689999999999999887 688876 999999999999999988654
No 131
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.39 E-value=2.5e-13 Score=124.81 Aligned_cols=46 Identities=11% Similarity=0.211 Sum_probs=38.5
Q ss_pred HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcE-EEEEecCCCh
Q 007952 148 IINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKT-VVTTIHQPSS 194 (583)
Q Consensus 148 ~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~t-ii~~~H~~~~ 194 (583)
+.+|++|++|||++ +|...+..+.+.++++.++|++ +|+++|.+..
T Consensus 81 ~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~~p~ 127 (149)
T 2kjq_A 81 AFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEYTPQ 127 (149)
T ss_dssp GGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESSCTT
T ss_pred HhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCCCHH
Confidence 45799999999998 6666699999999999888888 8999996543
No 132
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.39 E-value=1.2e-13 Score=130.26 Aligned_cols=49 Identities=20% Similarity=0.193 Sum_probs=43.5
Q ss_pred HHhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChH
Q 007952 147 IIINPSLLFLDEPTS-GLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSR 195 (583)
Q Consensus 147 L~~~p~illLDEPts-gLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~ 195 (583)
.+.+|++|+||||++ ++|+..+..+.+++.+..++|+++|++||.+..+
T Consensus 97 ~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 97 TVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQR 146 (180)
T ss_dssp HHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSCC
T ss_pred HhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChhH
Confidence 355999999999995 9999999999999999888899999999997654
No 133
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.38 E-value=1.5e-14 Score=154.31 Aligned_cols=170 Identities=16% Similarity=0.151 Sum_probs=100.9
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHHHHHH
Q 007952 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTY 89 (583)
Q Consensus 10 L~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~l~~ 89 (583)
-++++++++.|+.++|+|+|||||||||++|+|... .+.+.+.+. ....+++|.+++. ..+++.|+.-+
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~--------~i~~~~ftT-l~p~~G~V~~~~~--~~~~l~DtpGl 215 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP--------KIAPYPFTT-LSPNLGVVEVSEE--ERFTLADIPGI 215 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC--------EECCCTTCS-SCCEEEEEECSSS--CEEEEEECCCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc--------cccCcccce-ecceeeEEEecCc--ceEEEEecccc
Confidence 379999999999999999999999999999999531 233443321 2234566665530 01111111000
Q ss_pred HHHcCCCCCCCHHHH--HHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 007952 90 AALLRLPNTLTKQQK--EKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTT 167 (583)
Q Consensus 90 ~~~~~~~~~~~~~~~--~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~~ 167 (583)
.........+..... .++++.++..++++ +..+.++|+|++||+.++++|+.+|.++++ +++|...
T Consensus 216 i~~a~~~~~L~~~fl~~~era~~lL~vvDls--------~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~ 283 (416)
T 1udx_A 216 IEGASEGKGLGLEFLRHIARTRVLLYVLDAA--------DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLE 283 (416)
T ss_dssp CCCGGGSCCSCHHHHHHHTSSSEEEEEEETT--------SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSC
T ss_pred ccchhhhhhhhHHHHHHHHHHHhhhEEeCCc--------cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhh
Confidence 000000001111111 11122233334443 124568999999999999999999999999 9999987
Q ss_pred HHHHHHHHHHH-HHCCcEEEEEecCCChHHHhhcCeE
Q 007952 168 ALRIVQMLQDI-AEAGKTVVTTIHQPSSRLFHKFDKL 203 (583)
Q Consensus 168 ~~~i~~~l~~l-~~~g~tii~~~H~~~~~i~~~~D~v 203 (583)
+ ..++.+++. .+.|.+++.+|..-...+.++++.+
T Consensus 284 ~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i 319 (416)
T 1udx_A 284 E-EAVKALADALAREGLAVLPVSALTGAGLPALKEAL 319 (416)
T ss_dssp H-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHH
T ss_pred H-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHH
Confidence 7 455555554 3457777766644344455555543
No 134
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.36 E-value=2.9e-15 Score=140.95 Aligned_cols=137 Identities=20% Similarity=0.262 Sum_probs=86.9
Q ss_pred eEEEEECCCCCcHHHHHHHHhCCCCCC-CcccEEEECCccCC-------cccc-ccEE----EEccCCCCCCCCCHHHHH
Q 007952 21 EVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYS-------KSLK-SKIG----FVTQDDVLFPHLTVKETL 87 (583)
Q Consensus 21 e~~~i~G~nGaGKSTLl~~l~g~~~~~-~~~G~I~~~g~~~~-------~~~~-~~i~----yv~Q~~~~~~~lTv~e~l 87 (583)
++++|+|+||||||||++.|+|.+... ...|+|.++|.++. +.+| +.+| +++|+..++ ++|
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~----i~~-- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF----IRR-- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE----EEE--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE----Eec--
Confidence 589999999999999999999965311 12699999998732 1234 3566 888877655 110
Q ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHH-cCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEE-------EEeCC
Q 007952 88 TYAALLRLPNTLTKQQKEKRAIDVINE-LGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLL-------FLDEP 159 (583)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~v~~~l~~-lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~il-------lLDEP 159 (583)
. .. +....++++++. +. -.|+.++. +||||||||++|||+++.+|++. .=|.|
T Consensus 77 --------~---~~-~~~a~l~~~i~~~l~---g~dt~i~E----glSgGq~qri~lARall~~p~i~~~~~~a~~~~~~ 137 (171)
T 2f1r_A 77 --------V---SE-EEGNDLDWIYERYLS---DYDLVITE----GFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDER 137 (171)
T ss_dssp --------C---CH-HHHTCHHHHHHHHTT---TCSEEEEE----SCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSC
T ss_pred --------C---Ch-hhhhCHHHHHHhhCC---CCCEEEEC----CcCCCCCcEEEEEecccCCCccCccceEEEEecCC
Confidence 0 01 111235566665 43 24777763 59999999999999999999873 22454
Q ss_pred CCC---CCHHHHHHHHHHHHHHHHCC
Q 007952 160 TSG---LDSTTALRIVQMLQDIAEAG 182 (583)
Q Consensus 160 tsg---LD~~~~~~i~~~l~~l~~~g 182 (583)
..+ +|......+.+.+.+...+|
T Consensus 138 ~~~~~~f~~~~~~~~a~~i~~~~~~~ 163 (171)
T 2f1r_A 138 VDGHKWFRRDEVERIAEFILSLLREG 163 (171)
T ss_dssp CSSSCEECTTCHHHHHHHHHHHHTC-
T ss_pred cccCcccCcccHHHHHHHHHHHHhcc
Confidence 322 34555677777776665554
No 135
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.35 E-value=1.5e-12 Score=140.06 Aligned_cols=76 Identities=21% Similarity=0.282 Sum_probs=68.7
Q ss_pred CcccChHHHHHHHHHHHHH----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEE
Q 007952 130 VRGVSGGERKRVCIGNEII----INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLIL 205 (583)
Q Consensus 130 ~~~LSgGerqRv~ia~~L~----~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~ 205 (583)
+..||||||||++||++|+ .+|++++|||||++||+..+..+.+.|+++.++|.++|++||++ ...+.||+++.
T Consensus 331 ~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~--~~~~~~d~~~~ 408 (430)
T 1w1w_A 331 MEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVG 408 (430)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEE
T ss_pred cccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCH--HHHHhCCEEEE
Confidence 3469999999999999999 57999999999999999999999999999876688999999994 45688999999
Q ss_pred Ec
Q 007952 206 LG 207 (583)
Q Consensus 206 L~ 207 (583)
+.
T Consensus 409 ~~ 410 (430)
T 1w1w_A 409 VY 410 (430)
T ss_dssp EE
T ss_pred EE
Confidence 86
No 136
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.33 E-value=5.4e-14 Score=144.37 Aligned_cols=122 Identities=12% Similarity=0.134 Sum_probs=82.5
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEE---CCccCCcc---cc-ccEEEEccCCCCC-----CCCCH
Q 007952 16 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITY---NDHPYSKS---LK-SKIGFVTQDDVLF-----PHLTV 83 (583)
Q Consensus 16 ~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~---~g~~~~~~---~~-~~i~yv~Q~~~~~-----~~lTv 83 (583)
++.+|++++|+||||||||||+|+|+ ... +.+|+|.+ +|++.+.. .+ +.+||++|++.+. +.+|+
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~--~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~ 237 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEE--LRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP 237 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCC--CCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-Hhh--CcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH
Confidence 34579999999999999999999999 653 56899999 89876532 22 3689999998653 78999
Q ss_pred HHHH--HHH----HHcCCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCcccChHHHHHHHHHHH
Q 007952 84 KETL--TYA----ALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGERKRVCIGNE 146 (583)
Q Consensus 84 ~e~l--~~~----~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~LSgGerqRv~ia~~ 146 (583)
|++ .|. ..++.....+..+...+++++++.++|.+ ..+. +++.|||.++|++.|||+
T Consensus 238 -e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~-----~~~~ls~~~~R~~~~~~~ 301 (302)
T 2yv5_A 238 -REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKS-----YLKIIKVYLEEIKELCRE 301 (302)
T ss_dssp -GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHH-----HHHHTTCCCTTHHHHSSC
T ss_pred -HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHH-----HHHHHHHHHHHHHHHhcc
Confidence 887 443 10111111122233456889999999985 4443 457899999999999873
No 137
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.33 E-value=5.5e-14 Score=143.36 Aligned_cols=128 Identities=21% Similarity=0.266 Sum_probs=88.1
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHHHHHHHHH----c
Q 007952 18 NPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAAL----L 93 (583)
Q Consensus 18 ~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~l~~~~~----~ 93 (583)
+++.+++|.||||||||||.+.|.+.+. + .| . . ++.+.+|+||+.+++. ++++++.+... +
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~--~-~g------~----~-~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~l~ 93 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLM--E-KY------G----G-EKSIGYASIDDFYLTH-EDQLKLNEQFKNNKLL 93 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH--H-HH------G----G-GSCEEEEEGGGGBCCH-HHHHHHHHHTTTCGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhh--h-cC------C----C-CceEEEeccccccCCh-HHHHHHhccccccchh
Confidence 5788999999999999999999998652 1 22 0 1 3446677999988875 88999887521 1
Q ss_pred C---CCCCCCHHHHHHHHHHHHHHcCCCc--c--ccccccCccCcccChHHHHHHHHH--HHHHhCCCEEEEeCCCCCCC
Q 007952 94 R---LPNTLTKQQKEKRAIDVINELGLER--C--QDTMIGGSFVRGVSGGERKRVCIG--NEIIINPSLLFLDEPTSGLD 164 (583)
Q Consensus 94 ~---~~~~~~~~~~~~~v~~~l~~lgL~~--~--~~~~ig~~~~~~LSgGerqRv~ia--~~L~~~p~illLDEPtsgLD 164 (583)
. .|.... .+...+.++.+.-.- . ....+ ..+...+||||+||+.+| +++ +|+|+|+|||++++|
T Consensus 94 ~~~g~p~a~d----~~~l~~~l~~l~~g~~t~~~~~v~~-p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld 166 (290)
T 1odf_A 94 QGRGLPGTHD----MKLLQEVLNTIFNNNEHPDQDTVVL-PKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFN 166 (290)
T ss_dssp SSSCSTTSBC----HHHHHHHHHHHTC------CCEEEE-CCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCC
T ss_pred hhccCcchhH----HHHHHHHHHHhhccCccccCcceee-ccCccccCCccccccccccceEc--CCCEEEEeCccccCC
Confidence 1 133222 344556676664320 0 01111 224468999999999987 555 999999999999999
Q ss_pred HHH
Q 007952 165 STT 167 (583)
Q Consensus 165 ~~~ 167 (583)
+..
T Consensus 167 ~~~ 169 (290)
T 1odf_A 167 PIL 169 (290)
T ss_dssp CCC
T ss_pred ccc
Confidence 864
No 138
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.30 E-value=7.4e-12 Score=133.00 Aligned_cols=62 Identities=19% Similarity=0.196 Sum_probs=46.7
Q ss_pred hCCCEEEEeCCCCCCCHHHH------------HHHHHHHHHHHHC-CcEEEEEecCCC------------------hHHH
Q 007952 149 INPSLLFLDEPTSGLDSTTA------------LRIVQMLQDIAEA-GKTVVTTIHQPS------------------SRLF 197 (583)
Q Consensus 149 ~~p~illLDEPtsgLD~~~~------------~~i~~~l~~l~~~-g~tii~~~H~~~------------------~~i~ 197 (583)
.+|+++++|||++.+|+... .++++.|++++++ |.|||+++|... ..+.
T Consensus 272 ~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~ 351 (400)
T 3lda_A 272 SRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMA 351 (400)
T ss_dssp SCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHH
T ss_pred cCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHH
Confidence 46999999999999997543 6788889998765 999999999821 2245
Q ss_pred hhcCeEEEEcCCe
Q 007952 198 HKFDKLILLGKGS 210 (583)
Q Consensus 198 ~~~D~v~~L~~G~ 210 (583)
+.+|.++.|.+++
T Consensus 352 ~~ad~vl~L~~~~ 364 (400)
T 3lda_A 352 YSSTTRLGFKKGK 364 (400)
T ss_dssp HHCSEEEEEEECS
T ss_pred HhcceEEEEEecC
Confidence 6789999888764
No 139
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.29 E-value=7.6e-15 Score=156.85 Aligned_cols=135 Identities=18% Similarity=0.222 Sum_probs=92.6
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc--------cccccEEEEc------
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--------SLKSKIGFVT------ 72 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~--------~~~~~i~yv~------ 72 (583)
+.+|+++ + .++|++++|+|||||||||||++|+|.+. +.+|+|.+.|.++.. ..++.+++.+
T Consensus 156 ~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~--~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~ 231 (418)
T 1p9r_A 156 HDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELN--SSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRA 231 (418)
T ss_dssp HHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHC--CTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHH
T ss_pred HHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcC--CCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHH
Confidence 3467777 4 38999999999999999999999999653 458999999987642 1234455655
Q ss_pred ---cCCCC--CCC----CCHHHHHHHHHHcCCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHH
Q 007952 73 ---QDDVL--FPH----LTVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 142 (583)
Q Consensus 73 ---Q~~~~--~~~----lTv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ 142 (583)
|++.. ++. .|+.+++.++...... .+.......+ +.+.+..+|+.+.. .+..|||||+||
T Consensus 232 ~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~-~i~rL~~lgl~~~~-------~~~~LSgg~~QR-- 301 (418)
T 1p9r_A 232 ILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVG-AVTRLRDMGIEPFL-------ISSSLLGVLAQR-- 301 (418)
T ss_dssp HGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHH-HHHHHHHHTCCHHH-------HHHHEEEEEEEE--
T ss_pred HhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHH-HHHHHHHcCCcHHH-------HHHHHHHHHHHH--
Confidence 88754 343 6899998876421100 0000001112 22346778887542 246899999999
Q ss_pred HHHHHHhCCCEEE
Q 007952 143 IGNEIIINPSLLF 155 (583)
Q Consensus 143 ia~~L~~~p~ill 155 (583)
||++|+.+|++..
T Consensus 302 LaraL~~~p~~~~ 314 (418)
T 1p9r_A 302 LVRTLCPDCKEPY 314 (418)
T ss_dssp EEEEECTTTCEEE
T ss_pred hhhhhcCCCCccC
Confidence 9999999999875
No 140
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.28 E-value=1e-14 Score=159.85 Aligned_cols=178 Identities=15% Similarity=0.087 Sum_probs=107.5
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCcc-CCccccccEEEEccCCCCC-------
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP-YSKSLKSKIGFVTQDDVLF------- 78 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~-~~~~~~~~i~yv~Q~~~~~------- 78 (583)
..+++++++.+++|+.++|+|||||||||||++|+|... +.+|.|.++|.+ +.....+.++++.|.....
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~--~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~ 324 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIP--PDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYD 324 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSC--TTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCC--CCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHH
Confidence 457889999999999999999999999999999999663 568999999865 2212234566666553322
Q ss_pred ---------------CCCCHHHHHHHHHHcCCCCC-CCHHHHHHHHHHHHHHcCCCc--ccccccc--C---ccCcccCh
Q 007952 79 ---------------PHLTVKETLTYAALLRLPNT-LTKQQKEKRAIDVINELGLER--CQDTMIG--G---SFVRGVSG 135 (583)
Q Consensus 79 ---------------~~lTv~e~l~~~~~~~~~~~-~~~~~~~~~v~~~l~~lgL~~--~~~~~ig--~---~~~~~LSg 135 (583)
..++..|++.+.......+. ++. .....+.++++.+.... .....+. + .....+||
T Consensus 325 ~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT-~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~ 403 (511)
T 2oap_1 325 LLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYST-LHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRG 403 (511)
T ss_dssp HHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEE-EECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESS
T ss_pred HHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccc-cccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeC
Confidence 23444444433222111100 000 00001233333332211 0000000 0 12346899
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEE--EecCCChHHHhhc
Q 007952 136 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVT--TIHQPSSRLFHKF 200 (583)
Q Consensus 136 GerqRv~ia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~--~~H~~~~~i~~~~ 200 (583)
|||||..++. + | |+|||+.....+++.+.++.++|+|+++ ++|+.. ++.+.|
T Consensus 404 G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~-ei~~~~ 457 (511)
T 2oap_1 404 NTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLE-KMADFL 457 (511)
T ss_dssp SCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHH-HHHHHH
T ss_pred CCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHH-HHHHHc
Confidence 9999877642 2 7 9999998887777777777666888875 888854 455555
No 141
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.28 E-value=2.8e-12 Score=133.66 Aligned_cols=136 Identities=14% Similarity=0.162 Sum_probs=75.4
Q ss_pred EEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc--cccccEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCC
Q 007952 23 LALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLT 100 (583)
Q Consensus 23 ~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~--~~~~~i~yv~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~ 100 (583)
+.|.||||+|||||+++|++.+. ++..|++.++|.+... ..+..+++++|.+.+.-..+ + .. ...
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~-~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-------~~---~~~ 105 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIF-GPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS--D-------MG---NND 105 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHS-CTTCCC------------------CCEECSSEEEECCC----------------CC
T ss_pred EEEECCCCCCHHHHHHHHHHHHc-CCCCCeEEecceeecccccccceeeeecccceEEecHh--h-------cC---Ccc
Confidence 89999999999999999999433 3457999999876542 22456888888764321111 0 00 001
Q ss_pred HHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 007952 101 KQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE 180 (583)
Q Consensus 101 ~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~ 180 (583)
.. .+.+.++.+......+.. . .+|| +..+|+++++|||++ ||+.++..+.+.|.+..
T Consensus 106 ~~----~~~~~i~~~~~~~~~~~~-----~-~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~- 162 (354)
T 1sxj_E 106 RI----VIQELLKEVAQMEQVDFQ-----D-SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS- 162 (354)
T ss_dssp HH----HHHHHHHHHTTTTC-----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHST-
T ss_pred hH----HHHHHHHHHHHhcccccc-----c-cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc-
Confidence 11 233344433211111111 1 4566 778999999999999 99999999999998864
Q ss_pred CCcEEEEEecCCCh
Q 007952 181 AGKTVVTTIHQPSS 194 (583)
Q Consensus 181 ~g~tii~~~H~~~~ 194 (583)
.+.++|+++|++..
T Consensus 163 ~~~~~Il~t~~~~~ 176 (354)
T 1sxj_E 163 KNIRLIMVCDSMSP 176 (354)
T ss_dssp TTEEEEEEESCSCS
T ss_pred CCCEEEEEeCCHHH
Confidence 37899999999764
No 142
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.24 E-value=4.6e-15 Score=156.95 Aligned_cols=171 Identities=14% Similarity=0.131 Sum_probs=120.7
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhCCCC----------CCCcccEEEECCccCCc-----ccccc---EEEEccCCC
Q 007952 15 GSVNPGEVLALMGPSGSGKTTLLNLLSGRLM----------EPTVGGSITYNDHPYSK-----SLKSK---IGFVTQDDV 76 (583)
Q Consensus 15 ~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~----------~~~~~G~I~~~g~~~~~-----~~~~~---i~yv~Q~~~ 76 (583)
+.+++|+.++|+|+||||||||+|+|+|... ..+..|.+.++|..+.. ..++. ..++.+.+.
T Consensus 15 g~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pG 94 (392)
T 1ni3_A 15 GRPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAG 94 (392)
T ss_dssp SSSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGG
T ss_pred ccccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccc
Confidence 3678999999999999999999999999321 12568999998854311 11222 347778888
Q ss_pred CCCCCCHHHHH--HHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCC--C
Q 007952 77 LFPHLTVKETL--TYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINP--S 152 (583)
Q Consensus 77 ~~~~lTv~e~l--~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p--~ 152 (583)
+.+..+..|++ .|...++. ++.++..++..+ +..+..+||+. +| +
T Consensus 95 l~~~~s~~e~L~~~fl~~ir~------------~d~il~Vvd~~~-------d~~i~~v~~~~------------dP~~d 143 (392)
T 1ni3_A 95 LTKGASTGVGLGNAFLSHVRA------------VDAIYQVVRAFD-------DAEIIHVEGDV------------DPIRD 143 (392)
T ss_dssp GCCCCCSSSSSCHHHHHHHTT------------CSEEEEEEECCC-------TTCSSCCSSSS------------CHHHH
T ss_pred cccCCcHHHHHHHHHHHHHHH------------HHHHHHHHhccc-------cceeeeecccc------------Ccchh
Confidence 88877776655 33332221 111222222211 12334567653 89 9
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHH-HHCCcEEEEEecCCChHHHhhcCeEE-EEcCC-eEEEEcChhh
Q 007952 153 LLFLDEPTSGLDSTTALRIVQMLQDI-AEAGKTVVTTIHQPSSRLFHKFDKLI-LLGKG-SLLYFGKASE 219 (583)
Q Consensus 153 illLDEPtsgLD~~~~~~i~~~l~~l-~~~g~tii~~~H~~~~~i~~~~D~v~-~L~~G-~iv~~G~~~~ 219 (583)
++++|||+.++|+....+.++.++++ ++.|+||+ +|+. .++.++||++. +|.+| ++++.|+.++
T Consensus 144 i~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~-~~~~~l~~~i~~~L~~G~~~~~~~~~~~ 210 (392)
T 1ni3_A 144 LSIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAK-KEEQAIIEKVYQYLTETKQPIRKGDWSN 210 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHH-HHHHHHHHHHHHHHHTTCSCGGGSCCCH
T ss_pred hhhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccH-HHHHHHHHHHHHHhccCCceeecCCCCH
Confidence 99999999999999999999999998 76777864 9984 46788999999 99999 9988777543
No 143
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.18 E-value=1.2e-13 Score=133.73 Aligned_cols=165 Identities=19% Similarity=0.147 Sum_probs=89.8
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHHHHHHHHHcCCC
Q 007952 17 VNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP 96 (583)
Q Consensus 17 i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~l~~~~~~~~~ 96 (583)
.++|++++|+||||||||||+++|+|.+. +. | ..+++|++++..++. +..+++........+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~--~~-g--------------~~~g~v~~d~~~~~~-~~~~~~~~~~~~~~~ 80 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALS--AQ-G--------------LPAEVVPMDGFHLDN-RLLEPRGLLPRKGAP 80 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHH--HT-T--------------CCEEEEESGGGBCCH-HHHGGGTCGGGTTSG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHh--hc-C--------------CceEEEecCCCcCCH-HHHHHhcccccCCCC
Confidence 57899999999999999999999999653 11 2 124555555443321 112211100000111
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHH-HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 007952 97 NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG-NEIIINPSLLFLDEPTSGLDSTTALRIVQML 175 (583)
Q Consensus 97 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia-~~L~~~p~illLDEPtsgLD~~~~~~i~~~l 175 (583)
...... ...+.+..+...+..+....+ ...+.|+||+||++++ ++++.++.++++|||.-
T Consensus 81 ~~~~~~----~~~~~l~~l~~~~~i~~p~~d-~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~-------------- 141 (208)
T 3c8u_A 81 ETFDFE----GFQRLCHALKHQERVIYPLFD-RARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW-------------- 141 (208)
T ss_dssp GGBCHH----HHHHHHHHHHHCSCEEEEEEE-TTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTG--------------
T ss_pred chhhHH----HHHHHHHHHhcCCceecccCC-ccccCCCCCceEEcCCCcEEEECCceeccCCchh--------------
Confidence 111211 222333333211111222222 2346799999999987 77788888777888731
Q ss_pred HHHHHCCcEEEEEecCCChHHHhhcCeEEEEcCCeEEEEcChhhHHHHHH
Q 007952 176 QDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFS 225 (583)
Q Consensus 176 ~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~ 225 (583)
.++.+.--.++++.+.....+.+.+.|. +..|+ +.+++.+.+.
T Consensus 142 ~~l~~~~d~~i~vd~~~~~~~~R~~~R~--~~~g~-----t~~~~~~~~~ 184 (208)
T 3c8u_A 142 RDLTAIWDVSIRLEVPMADLEARLVQRW--LDHGL-----NHDAAVARAQ 184 (208)
T ss_dssp GGGGGTCSEEEEECCCHHHHHHHHHHHH--HHTTC-----CHHHHHHHHH
T ss_pred HHHHHhcCEEEEEeCCHHHHHHHHHHHH--HhcCC-----CHHHHHHHHH
Confidence 1112222367777777554456666662 34454 5667666554
No 144
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.14 E-value=2.6e-13 Score=141.21 Aligned_cols=153 Identities=20% Similarity=0.197 Sum_probs=99.3
Q ss_pred cccceeeceEEEEeCC-------eEEEEECCCCCcHHHHHHHHhCCCCC--CCcccEEEECCccCCc---c-ccccEEEE
Q 007952 5 EEKDILNGITGSVNPG-------EVLALMGPSGSGKTTLLNLLSGRLME--PTVGGSITYNDHPYSK---S-LKSKIGFV 71 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~G-------e~~~i~G~nGaGKSTLl~~l~g~~~~--~~~~G~I~~~g~~~~~---~-~~~~i~yv 71 (583)
+++.+++++++.+++| +.++|.||||+|||||+++|+|.+.. .+.+|.+..++.++.. . .++.+.++
T Consensus 29 g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~i 108 (334)
T 1in4_A 29 GQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFI 108 (334)
T ss_dssp SCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEE
T ss_pred CcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEE
Confidence 3456888999999877 89999999999999999999986421 1345666655544321 1 24579999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHcCCCCC-CCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhC
Q 007952 72 TQDDVLFPHLTVKETLTYAALLRLPNT-LTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIIN 150 (583)
Q Consensus 72 ~Q~~~~~~~lTv~e~l~~~~~~~~~~~-~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~ 150 (583)
.|.+.+.+ ++.|++..........- .......+.+++.++.+++.. +++ .+..||+|+|||+.++
T Consensus 109 DE~~~l~~--~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~-at~-----~~~~Ls~~l~sR~~l~------ 174 (334)
T 1in4_A 109 DEIHRLNK--AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG-ATT-----RSGLLSSPLRSRFGII------ 174 (334)
T ss_dssp ETGGGCCH--HHHHHHHHHHHTSCCCC---------------CCCEEEE-EES-----CGGGSCHHHHTTCSEE------
T ss_pred cchhhcCH--HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE-ecC-----CcccCCHHHHHhcCce------
Confidence 99887765 78888854432211000 011122234445555555543 333 3468999999998655
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC
Q 007952 151 PSLLFLDEPTSGLDSTTALRIVQMLQDIAEA 181 (583)
Q Consensus 151 p~illLDEPtsgLD~~~~~~i~~~l~~l~~~ 181 (583)
.+||+.+..++.+.|++.++.
T Consensus 175 ----------~~Ld~~~~~~l~~iL~~~~~~ 195 (334)
T 1in4_A 175 ----------LELDFYTVKELKEIIKRAASL 195 (334)
T ss_dssp ----------EECCCCCHHHHHHHHHHHHHH
T ss_pred ----------eeCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999998753
No 145
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.13 E-value=1.8e-12 Score=132.91 Aligned_cols=107 Identities=15% Similarity=0.194 Sum_probs=70.0
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEE---CCccCCcc---c-cccEEEEccCCC-----------
Q 007952 15 GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITY---NDHPYSKS---L-KSKIGFVTQDDV----------- 76 (583)
Q Consensus 15 ~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~---~g~~~~~~---~-~~~i~yv~Q~~~----------- 76 (583)
+++.+|++++|+||||||||||+|+|+|... +.+|+|.+ +|++++.. . .+.+|||+|++.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~--~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~ 241 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLK--LRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEP 241 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCC--CC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhccccc--ccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCH
Confidence 3456799999999999999999999999653 56899999 88876531 1 236899999974
Q ss_pred -----CCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccCh
Q 007952 77 -----LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSG 135 (583)
Q Consensus 77 -----~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~LSg 135 (583)
++|.+|+ ||+.|.. +. ...+...++.++++.+||. +..+. +++.||+
T Consensus 242 ~~~~~l~~~~~~-~n~~~~~-~~-----~~~e~~~~v~~~l~~~~L~~~~~~~-----~~~~lse 294 (301)
T 1u0l_A 242 EELKHYFKEFGD-KQCFFSD-CN-----HVDEPECGVKEAVENGEIAESRYEN-----YVKMFYE 294 (301)
T ss_dssp HHHGGGSTTSSS-CCCSSTT-CC-----SSSCSSCHHHHHHHHTSSCHHHHHH-----HHHHHHH
T ss_pred HHHHHHHHhccc-ccCcCCC-Cc-----CCCCCCcHHHHHHHcCCCCHHHHHH-----HHHHHHH
Confidence 5889999 9887752 11 1122345688999999995 44443 3556774
No 146
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.13 E-value=6.9e-15 Score=141.62 Aligned_cols=152 Identities=22% Similarity=0.266 Sum_probs=83.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCCCCC-----------CCcccEEEECCccCCc----cccccEEEEccCCCCCCCCC
Q 007952 18 NPGEVLALMGPSGSGKTTLLNLLSGRLME-----------PTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLT 82 (583)
Q Consensus 18 ~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~-----------~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~lT 82 (583)
++|++++|+||||||||||+++|+|.... ++..|+ ++|.++.. .+++.+ .|+..++ ..+
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~-~~~ 75 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIE-HAE 75 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEE-EEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEe-eee
Confidence 58999999999999999999999985420 133455 35554321 122222 3333222 123
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHH----HHHHHH-HHHhCCCEEEEe
Q 007952 83 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK----RVCIGN-EIIINPSLLFLD 157 (583)
Q Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerq----Rv~ia~-~L~~~p~illLD 157 (583)
+.+|+ ++ .+.+ .+++.++.-.. ...+. .+ .|-++ ++ .++ +++.+|++++||
T Consensus 76 ~~~n~-~g--------~~~~----~i~~~~~~~~~-~~~~~--------~~-~g~~~~~~~~~-~~~~~~l~~p~~~ild 131 (198)
T 1lvg_A 76 FSGNL-YG--------TSKE----AVRAVQAMNRI-CVLDV--------DL-QGVRSIKKTDL-CPIYIFVQPPSLDVLE 131 (198)
T ss_dssp ETTEE-EE--------EEHH----HHHHHHHTTCE-EEEEC--------CH-HHHHHHTTSSC-CCEEEEEECSCHHHHH
T ss_pred ecCcc-CC--------CCHH----HHHHHHHcCCc-EEEEC--------CH-HHHHHHHhcCC-CcEEEEEeCCCHHHHH
Confidence 33332 11 1222 23344432100 00000 00 01110 12 344 677788888889
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEEEcC
Q 007952 158 EPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 208 (583)
Q Consensus 158 EPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~ 208 (583)
|+|+++|..+...|.+.|.+..++ +...|.+ ..+|+|+++++
T Consensus 132 e~~~~~d~~~e~~i~~~l~~~~~~----~~~a~~~-----~~~D~iivnd~ 173 (198)
T 1lvg_A 132 QRLRLRNTETEESLAKRLAAARTD----MESSKEP-----GLFDLVIINDD 173 (198)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHH----TTGGGST-----TTCSEEEECSS
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHH----HHHhhcc-----CCceEEEECCC
Confidence 999999999999999999887653 2334522 46899887753
No 147
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.11 E-value=3.9e-12 Score=130.31 Aligned_cols=118 Identities=16% Similarity=0.179 Sum_probs=68.9
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEE---CCccCCcc--c-cccEEEEccCCCCCC----CCCHH
Q 007952 15 GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITY---NDHPYSKS--L-KSKIGFVTQDDVLFP----HLTVK 84 (583)
Q Consensus 15 ~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~---~g~~~~~~--~-~~~i~yv~Q~~~~~~----~lTv~ 84 (583)
+++.+|++++|+||||||||||+|+|+|... +.+|+|.+ +|+..+.. . +..+||++|.+.+.+ .+|+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~--~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~- 244 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELG--LRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE- 244 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC---------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccccc--ccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-
Confidence 5667899999999999999999999999653 56899998 88766432 2 222799999987755 6899
Q ss_pred HHHH--HHH------HcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHH
Q 007952 85 ETLT--YAA------LLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 140 (583)
Q Consensus 85 e~l~--~~~------~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqR 140 (583)
|++. |.. .++........+...+++++++.++|.+.+... ...++.|++||
T Consensus 245 e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~-----y~~lls~~~~~ 303 (307)
T 1t9h_A 245 EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDH-----YVEFMTEIKDR 303 (307)
T ss_dssp HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHH-----HHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHH-----HHHHHHHHhhc
Confidence 8883 331 122111111222345688999999997643321 24677777763
No 148
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.11 E-value=9.9e-13 Score=135.27 Aligned_cols=86 Identities=9% Similarity=0.128 Sum_probs=69.2
Q ss_pred ceeeceEEEE-------------------eCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEE---CCccCCcccc
Q 007952 8 DILNGITGSV-------------------NPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITY---NDHPYSKSLK 65 (583)
Q Consensus 8 ~iL~~vs~~i-------------------~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~---~g~~~~~~~~ 65 (583)
++++++|+.+ ++|+++||+||||||||||+++|+|.+...+.+|+|.+ +|.......+
T Consensus 49 ~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~~~~~~ 128 (308)
T 1sq5_A 49 PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPNQVL 128 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHHHH
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccCcHHHH
Confidence 5678888877 89999999999999999999999996431146899999 8877544445
Q ss_pred ccEEEEccCCCCCCCCCHHHHHHHHHHcC
Q 007952 66 SKIGFVTQDDVLFPHLTVKETLTYAALLR 94 (583)
Q Consensus 66 ~~i~yv~Q~~~~~~~lTv~e~l~~~~~~~ 94 (583)
+.++++ |+..+++.+|+.+++.+...++
T Consensus 129 ~~~~~v-q~~~~~~~~~~~~~~~~~~~l~ 156 (308)
T 1sq5_A 129 KERGLM-KKKGFPESYDMHRLVKFVSDLK 156 (308)
T ss_dssp HHHTCT-TCTTSGGGBCHHHHHHHHHHHT
T ss_pred HhCCEe-ecCCCCCCccHHHHHHHHHHHh
Confidence 567888 8777888899999998865543
No 149
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.08 E-value=5.1e-14 Score=142.55 Aligned_cols=128 Identities=16% Similarity=0.161 Sum_probs=89.4
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCcc----ccccEEEEccCC-CCCCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS----LKSKIGFVTQDD-VLFPH 80 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~----~~~~i~yv~Q~~-~~~~~ 80 (583)
...+++++++.+++| ++|.||||||||||+++|+|... .|.|.++|.++... ..+.+++++|+. ...|.
T Consensus 32 ~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~----~~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~ 105 (274)
T 2x8a_A 32 NPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESG----LNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPC 105 (274)
T ss_dssp SHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTT----CEEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSE
T ss_pred CHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcC----CCEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCC
Confidence 456889999999999 99999999999999999999642 27999999876432 234577888874 45566
Q ss_pred CCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCC
Q 007952 81 LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPT 160 (583)
Q Consensus 81 lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPt 160 (583)
+++.|++......+ .. .... .+.+..++ ....|||||+||+.+++++..+|++| |||+
T Consensus 106 i~~~Deid~~~~~r-------~~--~~~~------~~~~~~~~-----~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al 163 (274)
T 2x8a_A 106 VIFFDEVDALCPRR-------SD--RETG------ASVRVVNQ-----LLTEMDGLEARQQVFIMAATNRPDII--DPAI 163 (274)
T ss_dssp EEEEETCTTTCC------------------------CTTHHHH-----HHHHHHTCCSTTCEEEEEEESCGGGS--CHHH
T ss_pred eEeeehhhhhhccc-------CC--Ccch------HHHHHHHH-----HHHhhhcccccCCEEEEeecCChhhC--CHhh
Confidence 66666665421100 00 0000 01122222 34689999999999999999999986 8886
Q ss_pred C
Q 007952 161 S 161 (583)
Q Consensus 161 s 161 (583)
.
T Consensus 164 ~ 164 (274)
T 2x8a_A 164 L 164 (274)
T ss_dssp H
T ss_pred c
Confidence 4
No 150
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.01 E-value=1.8e-10 Score=118.06 Aligned_cols=115 Identities=17% Similarity=0.241 Sum_probs=81.5
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHHHHHHHH
Q 007952 12 GITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAA 91 (583)
Q Consensus 12 ~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~l~~~~ 91 (583)
.+++..++|++++|+|||||||||+++.|++.+. +.+|+|.+.+.+..+. ...|
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~--~~g~kV~lv~~D~~r~------------------~a~e------ 149 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFV--DEGKSVVLAAADTFRA------------------AAIE------ 149 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEEECTTCH------------------HHHH------
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHH--hcCCEEEEEccccccH------------------HHHH------
Confidence 3566678999999999999999999999999653 3456777765442110 0011
Q ss_pred HcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHH---HHHHHHHhCCCEEEEeCCCCCCCHHHH
Q 007952 92 LLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV---CIGNEIIINPSLLFLDEPTSGLDSTTA 168 (583)
Q Consensus 92 ~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv---~ia~~L~~~p~illLDEPtsgLD~~~~ 168 (583)
....+.+..|+.. ....|||+.+++ ++++++..+|+++++|||.. ....
T Consensus 150 ---------------qL~~~~~~~gl~~----------~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~ 201 (306)
T 1vma_A 150 ---------------QLKIWGERVGATV----------ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTK 201 (306)
T ss_dssp ---------------HHHHHHHHHTCEE----------ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCH
T ss_pred ---------------HHHHHHHHcCCcE----------EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhH
Confidence 1233455566642 235689999999 89999999999999999974 4556
Q ss_pred HHHHHHHHHHHH
Q 007952 169 LRIVQMLQDIAE 180 (583)
Q Consensus 169 ~~i~~~l~~l~~ 180 (583)
..+++.|+++.+
T Consensus 202 ~~l~~eL~~l~~ 213 (306)
T 1vma_A 202 KNLMEELRKVHR 213 (306)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 677777776643
No 151
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=99.00 E-value=1.3e-09 Score=106.92 Aligned_cols=60 Identities=22% Similarity=0.236 Sum_probs=45.7
Q ss_pred hCCCEEEEeCCCCCC--CHHHHHHHHHHHHHHH-HCCcEEEEEecCCChH-------HHhhcCeEEEEcC
Q 007952 149 INPSLLFLDEPTSGL--DSTTALRIVQMLQDIA-EAGKTVVTTIHQPSSR-------LFHKFDKLILLGK 208 (583)
Q Consensus 149 ~~p~illLDEPtsgL--D~~~~~~i~~~l~~l~-~~g~tii~~~H~~~~~-------i~~~~D~v~~L~~ 208 (583)
.+|+++++|||++.+ |+....+.+..|.+++ +.|+||++++|..... +.+.+|.++.|+.
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 589999999999988 6655666667676665 5689999999986431 4577899999964
No 152
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.98 E-value=8.5e-10 Score=119.42 Aligned_cols=179 Identities=13% Similarity=0.136 Sum_probs=110.8
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCccc-EEEECCccCCc-ccccc-EEEEccCCCCCCCCCHH
Q 007952 8 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGG-SITYNDHPYSK-SLKSK-IGFVTQDDVLFPHLTVK 84 (583)
Q Consensus 8 ~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G-~I~~~g~~~~~-~~~~~-i~yv~Q~~~~~~~lTv~ 84 (583)
..|+++.+-+++|+++.|.|+||+|||||+..+++... ...| .|.+.+.+.+. ...++ .+...+ ...
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~--~~~g~~Vl~~s~E~s~~~l~~r~~~~~~~-------~~~- 260 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVA--TKTNENVAIFSLEMSAQQLVMRMLCAEGN-------INA- 260 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHH--HHSSCCEEEEESSSCHHHHHHHHHHHHHT-------CCH-
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH--HhCCCcEEEEECCCCHHHHHHHHHHHHcC-------CCH-
Confidence 46888888899999999999999999999999997432 1123 34443322221 11000 000000 000
Q ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHH--hCCCEEEEeCCCCC
Q 007952 85 ETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEII--INPSLLFLDEPTSG 162 (583)
Q Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~--~~p~illLDEPtsg 162 (583)
+.+ +. ..++.++ .+++.+.++.++..+.. +- ...++|.+|.+ +.++.+. .+|+++++|+++..
T Consensus 261 ~~l------~~-g~l~~~~-~~~~~~a~~~l~~~~l~---i~--d~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~ 325 (454)
T 2r6a_A 261 QNL------RT-GKLTPED-WGKLTMAMGSLSNAGIY---ID--DTPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLI 325 (454)
T ss_dssp HHH------HT-SCCCHHH-HHHHHHHHHHHHSSCEE---EE--CCTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGS
T ss_pred HHH------hc-CCCCHHH-HHHHHHHHHHHhcCCEE---EE--CCCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHh
Confidence 001 11 1233332 33455666665433221 11 12478999987 5667776 68999999999997
Q ss_pred CCH--------HHHHHHHHHHHHHHHC-CcEEEEEec---------C--CC-------hHHHhhcCeEEEEcCCeE
Q 007952 163 LDS--------TTALRIVQMLQDIAEA-GKTVVTTIH---------Q--PS-------SRLFHKFDKLILLGKGSL 211 (583)
Q Consensus 163 LD~--------~~~~~i~~~l~~l~~~-g~tii~~~H---------~--~~-------~~i~~~~D~v~~L~~G~i 211 (583)
.++ ....++.+.|++++++ |++||+++| + |. ..+.+.+|.|++|..++.
T Consensus 326 ~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 326 QGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp CCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 743 3346778888888865 999999999 2 43 136778999999987754
No 153
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.91 E-value=2.3e-09 Score=109.36 Aligned_cols=118 Identities=16% Similarity=0.099 Sum_probs=82.1
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHHHHHHH
Q 007952 11 NGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYA 90 (583)
Q Consensus 11 ~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~l~~~ 90 (583)
++++++ +|++++++|+||+||||++..|++.+. +.+|+|.+.+.+..+.. ++ +.+
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~--~~~~~v~l~~~d~~~~~-----------------~~-~ql--- 145 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK--GKGRRPLLVAADTQRPA-----------------AR-EQL--- 145 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHH--HTTCCEEEEECCSSCHH-----------------HH-HHH---
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEecCCcccHh-----------------HH-HHH---
Confidence 678888 899999999999999999999999653 34688888776542110 00 000
Q ss_pred HHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCC-CCCCCHHHHH
Q 007952 91 ALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEP-TSGLDSTTAL 169 (583)
Q Consensus 91 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEP-tsgLD~~~~~ 169 (583)
..+.+..|+...... ..-.-.+.+|.+++.+...+++++++||| ++++|.....
T Consensus 146 ------------------~~~~~~~~l~~~~~~-------~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~ 200 (295)
T 1ls1_A 146 ------------------RLLGEKVGVPVLEVM-------DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMG 200 (295)
T ss_dssp ------------------HHHHHHHTCCEEECC-------TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHH
T ss_pred ------------------HHhcccCCeEEEEcC-------CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHH
Confidence 012234455432110 01233456788999888899999999999 9999988888
Q ss_pred HHHHHHHHH
Q 007952 170 RIVQMLQDI 178 (583)
Q Consensus 170 ~i~~~l~~l 178 (583)
.+.+..+.+
T Consensus 201 ~l~~~~~~~ 209 (295)
T 1ls1_A 201 ELARLKEVL 209 (295)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHhhhc
Confidence 877776655
No 154
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.90 E-value=1.2e-09 Score=113.99 Aligned_cols=148 Identities=22% Similarity=0.340 Sum_probs=87.6
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHHHHHHHHHcC
Q 007952 15 GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLR 94 (583)
Q Consensus 15 ~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~l~~~~~~~ 94 (583)
+-+++|+++.|.||||+|||||+..++.... ..+| .+.|+.-+...-+ . ++
T Consensus 56 GGl~~G~iv~I~G~pGsGKTtLal~la~~~~--~~g~---------------~vlyi~~E~~~~~------~--~a---- 106 (349)
T 2zr9_A 56 GGLPRGRVIEIYGPESSGKTTVALHAVANAQ--AAGG---------------IAAFIDAEHALDP------E--YA---- 106 (349)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHH--HTTC---------------CEEEEESSCCCCH------H--HH----
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHH--hCCC---------------eEEEEECCCCcCH------H--HH----
Confidence 4789999999999999999999888875321 1112 2444444322110 0 11
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhC--CCEEEEeCCCCCC---------
Q 007952 95 LPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIIN--PSLLFLDEPTSGL--------- 163 (583)
Q Consensus 95 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~--p~illLDEPtsgL--------- 163 (583)
+.+|+.. .+-.+- ...+. .+-+.++++++.+ |+++++|||++.+
T Consensus 107 ------------------~~lG~~~-~~l~i~----~~~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~ 161 (349)
T 2zr9_A 107 ------------------KKLGVDT-DSLLVS----QPDTG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEM 161 (349)
T ss_dssp ------------------HHTTCCG-GGCEEE----CCSSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC-
T ss_pred ------------------HHcCCCH-HHeEEe----cCCCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhcccc
Confidence 1122210 000010 11232 2345677888755 9999999999998
Q ss_pred -CH---HHHHHHHHHHHHH----HHCCcEEEEEecCCCh---------------HHHhhcCeEEEEcCCeEEEEcC
Q 007952 164 -DS---TTALRIVQMLQDI----AEAGKTVVTTIHQPSS---------------RLFHKFDKLILLGKGSLLYFGK 216 (583)
Q Consensus 164 -D~---~~~~~i~~~l~~l----~~~g~tii~~~H~~~~---------------~i~~~~D~v~~L~~G~iv~~G~ 216 (583)
|+ ..+..+.+.++++ ++.|+|||+++|.... .+...+|.++.+..++++..|+
T Consensus 162 gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~ 237 (349)
T 2zr9_A 162 GDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGT 237 (349)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence 33 2333455555555 3459999999996431 2456789888888776654443
No 155
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.87 E-value=6.8e-11 Score=128.81 Aligned_cols=167 Identities=16% Similarity=0.183 Sum_probs=99.2
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc-cccccEEEEccCCCCCCCC--CHHHHHH
Q 007952 12 GITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-SLKSKIGFVTQDDVLFPHL--TVKETLT 88 (583)
Q Consensus 12 ~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~-~~~~~i~yv~Q~~~~~~~l--Tv~e~l~ 88 (583)
.+++++.++..++|.|++||||||++++|..-+......|++.+.+.+... ++. ....+|++ +|.++..
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~--------~~~~lPhl~~~Vvtd~~ 230 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELS--------VYEGIPHLLTEVVTDMK 230 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGG--------GGTTCTTBSSSCBCSHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhh--------hhccCCcccceeecCHH
Confidence 477888899999999999999999999987521111234666655544321 111 00011111 1111111
Q ss_pred HHHH-cCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHH----------HHHHHHHhCCC-EEEE
Q 007952 89 YAAL-LRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV----------CIGNEIIINPS-LLFL 156 (583)
Q Consensus 89 ~~~~-~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv----------~ia~~L~~~p~-illL 156 (583)
.+.. ++ ...++.++| .+.++..|+.+..+-. ......+|+||+||. .+++++...|. ++++
T Consensus 231 ~a~~~L~----~~~~EmerR-~~ll~~~Gv~~i~~yn--~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvI 303 (512)
T 2ius_A 231 DAANALR----WCVNEMERR-YKLMSALGVRNLAGYN--EKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLV 303 (512)
T ss_dssp HHHHHHH----HHHHHHHHH-HHHHHHTTCSSHHHHH--HHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEE
T ss_pred HHHHHHH----HHHHHHHHH-HHHHHHcCCccHHHHH--HHHHHHhhcCCcccccccccccchhccccccccCCcEEEEE
Confidence 1111 11 113455555 3778888887643310 001235899998753 24555667888 7899
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHC----CcEEEEEecCCCh
Q 007952 157 DEPTSGLDSTTALRIVQMLQDIAEA----GKTVVTTIHQPSS 194 (583)
Q Consensus 157 DEPtsgLD~~~~~~i~~~l~~l~~~----g~tii~~~H~~~~ 194 (583)
||++.-+|. ...++.+.+.++++. |.++|++||+|+.
T Consensus 304 DE~~~ll~~-~~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~ 344 (512)
T 2ius_A 304 DEFADLMMT-VGKKVEELIARLAQKARAAGIHLVLATQRPSV 344 (512)
T ss_dssp ETHHHHHHH-HHHHHHHHHHHHHHHCGGGTEEEEEEESCCCT
T ss_pred eCHHHHHhh-hhHHHHHHHHHHHHHhhhCCcEEEEEecCCcc
Confidence 999998884 345666777766543 7799999999973
No 156
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.86 E-value=2.2e-09 Score=109.57 Aligned_cols=141 Identities=20% Similarity=0.219 Sum_probs=87.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHHHHHHHHHcCCCC
Q 007952 18 NPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPN 97 (583)
Q Consensus 18 ~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~l~~~~~~~~~~ 97 (583)
++|++++++|||||||||+++.|++.+. +.+| +++.++.+|.. ..++.|.+...+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~--~~~G--------------~~V~lv~~D~~---r~~a~eqL~~~~------ 157 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISM--LEKH--------------KKIAFITTDTY---RIAAVEQLKTYA------ 157 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHH--HTTC--------------CCEEEEECCCS---STTHHHHHHHHH------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHH--HhcC--------------CEEEEEecCcc---cchHHHHHHHHH------
Confidence 4799999999999999999999998652 1234 24667777652 235566554322
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 007952 98 TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD 177 (583)
Q Consensus 98 ~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~ 177 (583)
+..|+.... ..+. +.-+.+++ .+.+|+++|+| |+|+|+.....+.++.+-
T Consensus 158 ---------------~~~gl~~~~----------~~~~-~~l~~al~--~~~~~dlvIiD--T~G~~~~~~~~~~el~~~ 207 (296)
T 2px0_A 158 ---------------ELLQAPLEV----------CYTK-EEFQQAKE--LFSEYDHVFVD--TAGRNFKDPQYIDELKET 207 (296)
T ss_dssp ---------------TTTTCCCCB----------CSSH-HHHHHHHH--HGGGSSEEEEE--CCCCCTTSHHHHHHHHHH
T ss_pred ---------------HhcCCCeEe----------cCCH-HHHHHHHH--HhcCCCEEEEe--CCCCChhhHHHHHHHHHH
Confidence 122332110 1122 23344555 45999999999 999998766555444333
Q ss_pred HH---HCCcEEEE-EecCCChHHHhhcCeEEEEcCCeEEEE
Q 007952 178 IA---EAGKTVVT-TIHQPSSRLFHKFDKLILLGKGSLLYF 214 (583)
Q Consensus 178 l~---~~g~tii~-~~H~~~~~i~~~~D~v~~L~~G~iv~~ 214 (583)
+. ..+.++++ ++|+. .++.+.+|++..++.+.++..
T Consensus 208 l~~~~~~~~~lVl~at~~~-~~~~~~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 208 IPFESSIQSFLVLSATAKY-EDMKHIVKRFSSVPVNQYIFT 247 (296)
T ss_dssp SCCCTTEEEEEEEETTBCH-HHHHHHTTTTSSSCCCEEEEE
T ss_pred HhhcCCCeEEEEEECCCCH-HHHHHHHHHHhcCCCCEEEEe
Confidence 32 12334444 47874 457777777666666777764
No 157
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.84 E-value=1.6e-12 Score=131.34 Aligned_cols=123 Identities=15% Similarity=0.203 Sum_probs=83.3
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCC-CCCCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDV-LFPHL 81 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~-~~~~l 81 (583)
..+++++++.+++| ++|+||||+|||||+++|++... .|.|.+++.++.. ...+.+++++|+.. ..|.+
T Consensus 62 ~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i 135 (278)
T 1iy2_A 62 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 135 (278)
T ss_dssp HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC----CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcE
Confidence 45788999999999 89999999999999999999542 6899999876422 12345677888753 56677
Q ss_pred CHHHHHHHHHHcCCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCE
Q 007952 82 TVKETLTYAALLRLPN-TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSL 153 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~i 153 (583)
++.|++......+... ....++..+.+.+++ ..|||||+||+.+++++..+|++
T Consensus 136 ~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll------------------~~lsgg~~~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 136 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL------------------VEMDGFEKDTAIVVMAATNRPDI 190 (278)
T ss_dssp EEEETHHHHHCC--------CHHHHHHHHHHH------------------HHHTTCCTTCCEEEEEEESCTTS
T ss_pred EehhhhHhhhcccccccCCcchHHHHHHHHHH------------------HHHhCCCCCCCEEEEEecCCchh
Confidence 8888885432211100 000112222222222 36899999999999999999876
No 158
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.83 E-value=7.2e-10 Score=119.91 Aligned_cols=52 Identities=17% Similarity=0.143 Sum_probs=47.2
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS 61 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~ 61 (583)
..+|+|+|+++++ |+++|+|||||||||||++|+|... +.+|+|.++|+++.
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~~ 68 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALI--PDLTLLNFRNTTEA 68 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHC--CCTTTCCCCCTTSC
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCC--CCCCEEEECCEEcc
Confidence 5689999999999 9999999999999999999999653 57899999998764
No 159
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.83 E-value=6.7e-10 Score=105.44 Aligned_cols=140 Identities=16% Similarity=0.134 Sum_probs=76.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCC---C------cccEEEECCccCCc------cccccEEEEccCCCC-CCCCCHHH
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRLMEP---T------VGGSITYNDHPYSK------SLKSKIGFVTQDDVL-FPHLTVKE 85 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~~~~---~------~~G~I~~~g~~~~~------~~~~~i~yv~Q~~~~-~~~lTv~e 85 (583)
.++|+|+||||||||++.++|..... + .+|+|.++|+++.- ...+..++++|.... ...++|.+
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 110 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYD 110 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEE
Confidence 68999999999999999999965321 1 46899999875421 111112222221000 00011111
Q ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHH---HcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCC
Q 007952 86 TLTYAALLRLPNTLTKQQKEKRAIDVIN---ELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 162 (583)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~---~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsg 162 (583)
.. .... .+.+..+++ ...-.+..-..+++. .+|..-..++..+|++++.+|+++++| ||+
T Consensus 111 ~~------------~~~s-~~~~~~~~~~~~~~~~~~~~i~~v~nK--~Dl~~~~~~~~~~a~~l~~~~~~~~ld--~Sa 173 (191)
T 1oix_A 111 IA------------KHLT-YENVERWLKELRDHADSNIVIMLVGNK--SDLRHLRAVPTDEARAFAEKNGLSFIE--TSA 173 (191)
T ss_dssp TT------------CHHH-HHTHHHHHHHHHHHSCTTCEEEEEEEC--GGGGGGCCSCHHHHHHHHHHTTCEEEE--CCT
T ss_pred Cc------------CHHH-HHHHHHHHHHHHHhcCCCCcEEEEEEC--cccccccccCHHHHHHHHHHcCCEEEE--EeC
Confidence 00 0000 011111111 111111100112221 133333334578899999999999999 999
Q ss_pred CCHHHHHHHHHHHHHH
Q 007952 163 LDSTTALRIVQMLQDI 178 (583)
Q Consensus 163 LD~~~~~~i~~~l~~l 178 (583)
+|..+..++++.|.+.
T Consensus 174 ld~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 174 LDSTNVEAAFQTILTE 189 (191)
T ss_dssp TTCTTHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH
Confidence 9999999999988763
No 160
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.82 E-value=2.5e-12 Score=128.08 Aligned_cols=123 Identities=15% Similarity=0.202 Sum_probs=82.4
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCC-CCCCCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDD-VLFPHL 81 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~-~~~~~l 81 (583)
..+++++++.+++| ++|+||||+|||||+++|++... .|.+.++|.++.. ...+.+++++|+. ...|.+
T Consensus 38 ~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i 111 (254)
T 1ixz_A 38 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 111 (254)
T ss_dssp HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC----CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeE
Confidence 45788999999999 99999999999999999998542 5889998865422 1234467778874 356677
Q ss_pred CHHHHHHHHHHcCCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCE
Q 007952 82 TVKETLTYAALLRLPN-TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSL 153 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~i 153 (583)
++.|++......+... ....++..+.+.+++ ..|||||+||+.+++++..+|++
T Consensus 112 ~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll------------------~~l~g~~~~~~~i~~a~t~~p~~ 166 (254)
T 1ixz_A 112 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL------------------VEMDGFEKDTAIVVMAATNRPDI 166 (254)
T ss_dssp EEEETHHHHHC---------CHHHHHHHHHHH------------------HHHHTCCTTCCEEEEEEESCGGG
T ss_pred EEehhhhhhhcccCccccccchHHHHHHHHHH------------------HHHhCCCCCCCEEEEEccCCchh
Confidence 7777774332211100 001112222222222 36899999999999999999986
No 161
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.81 E-value=7.6e-11 Score=132.19 Aligned_cols=161 Identities=18% Similarity=0.154 Sum_probs=99.0
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCC--------
Q 007952 5 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDV-------- 76 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~-------- 76 (583)
+...+++++++.+++|+.++|+||||+|||||+++|++... +...|.+.+++.+... ....++++++...
T Consensus 45 G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~-~~~~~~~~~~~~~~~~-~~p~i~~~p~g~~~~~~e~~~ 122 (604)
T 3k1j_A 45 GQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLP-TETLEDILVFPNPEDE-NMPRIKTVPACQGRRIVEKYR 122 (604)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSC-CSSCEEEEEECCTTCT-TSCEEEEEETTHHHHHHHHHH
T ss_pred CchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCC-cccCCeEEEeCCcccc-cCCcEEEEecchHHHHHHHHH
Confidence 44568899999999999999999999999999999999664 3344889998876543 3456888887431
Q ss_pred --------------CCCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHH
Q 007952 77 --------------LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 142 (583)
Q Consensus 77 --------------~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ 142 (583)
.+..+++.+|+........+...-. +...... +.+|.-+... ....++|+|++|++.
T Consensus 123 ~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~-~~~~~~~---~L~G~~~~~~-----~~~g~~~~g~~~~i~ 193 (604)
T 3k1j_A 123 EKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFID-ATGAHAG---ALLGDVRHDP-----FQSGGLGTPAHERVE 193 (604)
T ss_dssp HHHHHHTCC-----------CCCEEEECCTTCSSCCEEE-CTTCCHH---HHHCEECCCC-----C----CCCCGGGGEE
T ss_pred HhhccchhhhhhcccccccccccceeeccccCCCCCEEE-cCCCCHH---hcCceEEech-----hhcCCcccccccccc
Confidence 1111111111110000000000000 0000011 1112111111 112579999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 007952 143 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD 177 (583)
Q Consensus 143 ia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~ 177 (583)
.++....++.+||+||... |++..+..+.+.|.+
T Consensus 194 ~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 194 PGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp CCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred CceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 9999999999999999998 899888888887764
No 162
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.79 E-value=1.8e-10 Score=110.31 Aligned_cols=65 Identities=20% Similarity=0.373 Sum_probs=44.9
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCCCHH
Q 007952 14 TGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLTVK 84 (583)
Q Consensus 14 s~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~lTv~ 84 (583)
|+++++|++++|+||||||||||+++|+|.. + .+.+++....+ ..+..++|++|++..++.+++.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKAL--A----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKE 69 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHS--S----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHH
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhC--C----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhc
Confidence 5678899999999999999999999999964 2 46666655432 2345688999976555444433
No 163
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.66 E-value=5.6e-10 Score=109.42 Aligned_cols=38 Identities=32% Similarity=0.305 Sum_probs=22.9
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHh-CCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLS-GRL 44 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~-g~~ 44 (583)
.+..+++|+++++|++++|+||||||||||+++|+ |..
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 45789999999999999999999999999999999 964
No 164
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.61 E-value=5.7e-08 Score=105.26 Aligned_cols=59 Identities=22% Similarity=0.397 Sum_probs=44.2
Q ss_pred hHHHHHHHHHHHHHhCCCEEEEeCC----------CCCCCHHHHHHHHHHHHHHH----HCCcEEEEEecCCC
Q 007952 135 GGERKRVCIGNEIIINPSLLFLDEP----------TSGLDSTTALRIVQMLQDIA----EAGKTVVTTIHQPS 193 (583)
Q Consensus 135 gGerqRv~ia~~L~~~p~illLDEP----------tsgLD~~~~~~i~~~l~~l~----~~g~tii~~~H~~~ 193 (583)
|++++|-.++++....|.+||+||+ +.|.|......+.++|..+- +.+..||.+||+|.
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPD 165 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChh
Confidence 6778888899999999999999999 44777777777777777663 34778999999974
No 165
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.58 E-value=3.8e-11 Score=126.48 Aligned_cols=144 Identities=19% Similarity=0.197 Sum_probs=83.9
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCC-CCCCCCHHH
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDV-LFPHLTVKE 85 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~-~~~~lTv~e 85 (583)
..+++++|+.+++|++++|.||||||||||+++|+|. .+|++..-+.+. +.....+++++|... ++++++...
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~-----~~g~~~~~~~~~-~~~~~~lg~~~q~~~~l~dd~~~~~ 229 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL-----CGGKALNVNLPL-DRLNFELGVAIDQFLVVFEDVKGTG 229 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH-----HCCEEECCSSCT-TTHHHHHGGGTTCSCEEETTCCCST
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh-----cCCcEEEEeccc-hhHHHHHHHhcchhHHHHHHHHHHH
Confidence 4688999999999999999999999999999999983 357776522111 111223667777653 233333221
Q ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHH---cCCCc-cc---cccc--c--CccCcccChHHHHHHHHHHHHHhCCCEE
Q 007952 86 TLTYAALLRLPNTLTKQQKEKRAIDVINE---LGLER-CQ---DTMI--G--GSFVRGVSGGERKRVCIGNEIIINPSLL 154 (583)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~---lgL~~-~~---~~~i--g--~~~~~~LSgGerqRv~ia~~L~~~p~il 154 (583)
.+ ..+.... ........+.+.++. +.+.. .. +... | +.....+++|+++|+..+.+++.+|+++
T Consensus 230 ~~----~r~l~~~-~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDLl 304 (377)
T 1svm_A 230 GE----SRDLPSG-QGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYLK 304 (377)
T ss_dssp TT----TTTCCCC-SHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHHH
T ss_pred HH----Hhhcccc-CcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCeE
Confidence 11 0001000 010011223333331 00110 00 0000 0 1234568999999999888888899988
Q ss_pred E-EeCCCC
Q 007952 155 F-LDEPTS 161 (583)
Q Consensus 155 l-LDEPts 161 (583)
+ ||+|+.
T Consensus 305 iyLd~~~~ 312 (377)
T 1svm_A 305 HCLERSEF 312 (377)
T ss_dssp HHHHTCTH
T ss_pred EEEeCCHH
Confidence 7 999997
No 166
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.55 E-value=3.5e-08 Score=102.93 Aligned_cols=71 Identities=18% Similarity=0.231 Sum_probs=44.4
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEE-EECCccCCc-cccccEEEEccCCCCCCCCCHHHHH
Q 007952 15 GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSI-TYNDHPYSK-SLKSKIGFVTQDDVLFPHLTVKETL 87 (583)
Q Consensus 15 ~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I-~~~g~~~~~-~~~~~i~yv~Q~~~~~~~lTv~e~l 87 (583)
+=+++|+++.|.||||||||||+..+++... ..+|.+ ++++..... ...+++|+.+|+..+....++.+.+
T Consensus 56 GGi~~G~i~~I~GppGsGKSTLal~la~~~~--~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l 128 (356)
T 3hr8_A 56 GGYPRGRIVEIFGQESSGKTTLALHAIAEAQ--KMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQAL 128 (356)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHH
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHH
Confidence 4689999999999999999999999997432 234544 555544321 2233455555544333333444433
No 167
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.53 E-value=2.3e-09 Score=105.07 Aligned_cols=58 Identities=21% Similarity=0.282 Sum_probs=40.7
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc------------cccccEEEEccC
Q 007952 14 TGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK------------SLKSKIGFVTQD 74 (583)
Q Consensus 14 s~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~------------~~~~~i~yv~Q~ 74 (583)
++++++ ++++|+|||||||||||++|+|.+. +.+|+|.++|.++.. ..+..++||+|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALI--PDLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHS--CCTTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhcccc--cCCCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 677777 8999999999999999999999653 568999999987621 124678999984
No 168
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.52 E-value=5.1e-08 Score=92.72 Aligned_cols=37 Identities=22% Similarity=0.188 Sum_probs=32.9
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 007952 141 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA 179 (583)
Q Consensus 141 v~ia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~ 179 (583)
...|++++.+|+++++| ||++|.....++++.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 45689999999999999 99999999999999887754
No 169
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.51 E-value=4e-09 Score=101.02 Aligned_cols=62 Identities=21% Similarity=0.247 Sum_probs=40.2
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCcc---ccccEEEEccCCC
Q 007952 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS---LKSKIGFVTQDDV 76 (583)
Q Consensus 9 iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~---~~~~i~yv~Q~~~ 76 (583)
+..+-....++|++++|+||||||||||+++|++.+ |.+.++|.++... .+...++++|+..
T Consensus 18 ~~~~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~------g~~~i~~d~~~~~~~~~~~~~g~~~~~~~ 82 (200)
T 4eun_A 18 LYFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET------GLEFAEADAFHSPENIATMQRGIPLTDED 82 (200)
T ss_dssp ----------CCCEEEEECCTTSCHHHHHHHHHHHH------CCEEEEGGGGSCHHHHHHHHTTCCCCHHH
T ss_pred hHHHhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh------CCeEEcccccccHHHHHHHhcCCCCCCcc
Confidence 333334567899999999999999999999999843 8899998776421 1223567777543
No 170
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.51 E-value=1.6e-07 Score=98.52 Aligned_cols=151 Identities=19% Similarity=0.212 Sum_probs=87.6
Q ss_pred CCeE-EEEECCCCCcHHHHHHHHhCCCCCC---------CcccEEEECCccCCccccccEEEEccCCCCCCCCCHHH---
Q 007952 19 PGEV-LALMGPSGSGKTTLLNLLSGRLMEP---------TVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE--- 85 (583)
Q Consensus 19 ~Ge~-~~i~G~nGaGKSTLl~~l~g~~~~~---------~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e--- 85 (583)
+|-. ++|+|++|||||||+|.|+|..... +..|.|.++|.++. +....|++.|.+ .-.|..
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~--l~DT~G~i~~lp----~~lve~f~~ 250 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM--LVDTVGFIRGIP----PQIVDAFFV 250 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE--EEECCCBCSSCC----GGGHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE--EEeCCCchhcCC----HHHHHHHHH
Confidence 3444 9999999999999999999964310 35688888885431 222345444422 111211
Q ss_pred HHHHHHHcC-----C-CCCCC--HHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHH----HHH-HhCCC
Q 007952 86 TLTYAALLR-----L-PNTLT--KQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG----NEI-IINPS 152 (583)
Q Consensus 86 ~l~~~~~~~-----~-~~~~~--~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia----~~L-~~~p~ 152 (583)
++....... . ..... ..+..+.+.++++.+++.+..--.++| +...+|+|+++|+.++ +++ ..+|+
T Consensus 251 tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~N-K~Dl~~~~~~~~~~~~~~l~~~l~~~~~~ 329 (364)
T 2qtf_A 251 TLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLN-KIDKINGDLYKKLDLVEKLSKELYSPIFD 329 (364)
T ss_dssp HHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEE-CGGGCCSCHHHHHHHHHHHHHHHCSCEEE
T ss_pred HHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEE-CCCCCCchHHHHHHHHHHHHHHhcCCCCc
Confidence 111100000 0 00111 123334567788888876543112222 2456788888988887 444 33445
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 007952 153 LLFLDEPTSGLDSTTALRIVQMLQDIAE 180 (583)
Q Consensus 153 illLDEPtsgLD~~~~~~i~~~l~~l~~ 180 (583)
+ +|+|++|.....++.+.|.++..
T Consensus 330 ~----~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 330 V----IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp E----EECBTTTTBSHHHHHHHHHHHHH
T ss_pred E----EEEECCCCcCHHHHHHHHHHHhc
Confidence 4 89999999999999999988654
No 171
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.38 E-value=1.9e-07 Score=96.64 Aligned_cols=129 Identities=12% Similarity=0.179 Sum_probs=85.5
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHHHH
Q 007952 8 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETL 87 (583)
Q Consensus 8 ~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~l 87 (583)
.-|+.+.+-+.+|+++.|.|++|+|||||+.-++.... . .| ..+.|+.= .++..+
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a---~------~g--------~~Vl~fSl------Ems~~q-- 88 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSAL---N------DD--------RGVAVFSL------EMSAEQ-- 88 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHH---H------TT--------CEEEEEES------SSCHHH--
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH---H------cC--------CeEEEEeC------CCCHHH--
Confidence 35677777899999999999999999999998886321 1 11 12444332 133332
Q ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 007952 88 TYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTT 167 (583)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~~ 167 (583)
...|.......+++.+..+ ..||.+|++|+..|...+.++++++.|+|...
T Consensus 89 ----------------l~~Rlls~~~~v~~~~l~~--------g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s----- 139 (338)
T 4a1f_A 89 ----------------LALRALSDLTSINMHDLES--------GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVR----- 139 (338)
T ss_dssp ----------------HHHHHHHHHHCCCHHHHHH--------TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCC-----
T ss_pred ----------------HHHHHHHHhhCCCHHHHhc--------CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc-----
Confidence 2222222222233322221 26999999999999999999999999998654
Q ss_pred HHHHHHHHHHHHHC--CcEEEEEec
Q 007952 168 ALRIVQMLQDIAEA--GKTVVTTIH 190 (583)
Q Consensus 168 ~~~i~~~l~~l~~~--g~tii~~~H 190 (583)
..++...+++++++ |..+|++-|
T Consensus 140 i~~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 140 IEQIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp HHHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEec
Confidence 34677777777654 577777754
No 172
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.34 E-value=4.7e-07 Score=104.01 Aligned_cols=73 Identities=12% Similarity=0.206 Sum_probs=58.2
Q ss_pred cCcccChHHHHHHHHHHHHHhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHHCCcEEEEE-ecCCChHHHhhcCe
Q 007952 129 FVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS-GLDSTTALRIVQMLQDIAEAGKTVVTT-IHQPSSRLFHKFDK 202 (583)
Q Consensus 129 ~~~~LSgGerqRv~ia~~L~~~p~illLDEPts-gLD~~~~~~i~~~l~~l~~~g~tii~~-~H~~~~~i~~~~D~ 202 (583)
.+.-+|.|+.+|..++..++.+++++++|||.. +||......+++.+.+.....++|+++ ||++ ..+.+++++
T Consensus 187 ~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~-~~l~~~~~~ 261 (773)
T 2xau_A 187 ILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDA-EKFQRYFND 261 (773)
T ss_dssp SEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCC-HHHHHHTTS
T ss_pred CEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccH-HHHHHHhcC
Confidence 345689999999999999999999999999996 999887777777766654456778775 8975 456677764
No 173
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.33 E-value=1.3e-08 Score=97.37 Aligned_cols=54 Identities=24% Similarity=0.252 Sum_probs=43.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEE--EECCccCCcc
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSI--TYNDHPYSKS 63 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I--~~~g~~~~~~ 63 (583)
....+..+...++|++++|+||||||||||.+.|++++. ..|.+ +++|.++.+.
T Consensus 12 ~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~---~~G~~~~~~d~d~~~~~ 67 (200)
T 3uie_A 12 VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY---QKGKLCYILDGDNVRHG 67 (200)
T ss_dssp CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEEEHHHHTTT
T ss_pred cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH---hcCceEEEecCchhhhH
Confidence 345566667778999999999999999999999999652 45877 8888766443
No 174
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.25 E-value=3e-07 Score=87.59 Aligned_cols=30 Identities=30% Similarity=0.381 Sum_probs=25.9
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 15 GSVNPGEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 15 ~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
+++++|++++|+||||||||||+++|++..
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 367899999999999999999999999965
No 175
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.24 E-value=1.9e-06 Score=89.97 Aligned_cols=62 Identities=8% Similarity=0.123 Sum_probs=48.6
Q ss_pred CcccChHHHHHHHHHHHHHhCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEe--cCCC
Q 007952 130 VRGVSGGERKRVCIGNEIIINPSLLFLD-EPTSGLDSTTALRIVQMLQDIAEAGKTVVTTI--HQPS 193 (583)
Q Consensus 130 ~~~LSgGerqRv~ia~~L~~~p~illLD-EPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~--H~~~ 193 (583)
...+|+||+|++. +.+...++-++++| +|+.|+|......+++.+++... ++.+|++. ||..
T Consensus 229 ~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~ 293 (357)
T 2e87_A 229 ISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVA 293 (357)
T ss_dssp STTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTC
T ss_pred hhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccC
Confidence 3468999998876 55555677789999 99999999998888888877653 67777777 7743
No 176
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.22 E-value=2.4e-07 Score=95.39 Aligned_cols=77 Identities=19% Similarity=0.206 Sum_probs=56.8
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc--------cc-----cccEEEE-ccCC
Q 007952 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--------SL-----KSKIGFV-TQDD 75 (583)
Q Consensus 10 L~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~--------~~-----~~~i~yv-~Q~~ 75 (583)
++++|+++++|++++|+|+||+||||++..|++.+. +.+|+|.+.+.+..+ .+ +..+.++ +|..
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~--~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~ 172 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYA--ELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKL 172 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHH--HTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSST
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCC
Confidence 478999999999999999999999999999999653 357899998876532 12 4568888 6665
Q ss_pred CCCCCCCHHHHHH
Q 007952 76 VLFPHLTVKETLT 88 (583)
Q Consensus 76 ~~~~~lTv~e~l~ 88 (583)
...|..++.+++.
T Consensus 173 ~~~p~~~~~~~l~ 185 (320)
T 1zu4_A 173 NADPASVVFDAIK 185 (320)
T ss_dssp TCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 4444434444443
No 177
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.21 E-value=1e-07 Score=94.81 Aligned_cols=56 Identities=25% Similarity=0.291 Sum_probs=45.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHh---CCCCCCCcccEEE--------ECCccCCc-----cccccEEEEccCC
Q 007952 18 NPGEVLALMGPSGSGKTTLLNLLS---GRLMEPTVGGSIT--------YNDHPYSK-----SLKSKIGFVTQDD 75 (583)
Q Consensus 18 ~~Ge~~~i~G~nGaGKSTLl~~l~---g~~~~~~~~G~I~--------~~g~~~~~-----~~~~~i~yv~Q~~ 75 (583)
++|++++|+|||||||||++++|+ |.. .+++|.+. .+|.++.. .+++.+++++|++
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~--~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 96 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWR--LLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQ 96 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCE--EEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCC--cCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecC
Confidence 789999999999999999999999 843 25789998 88877632 3456788888754
No 178
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.20 E-value=5.7e-09 Score=113.72 Aligned_cols=129 Identities=16% Similarity=0.199 Sum_probs=84.2
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCcc----ccccEEEEccCCC-CCCCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS----LKSKIGFVTQDDV-LFPHL 81 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~----~~~~i~yv~Q~~~-~~~~l 81 (583)
..+++++++.+++| +.|.||||+|||||+++|++... .+.+.++|.++... ..+.+..++|+.. ..|.+
T Consensus 53 ~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~----~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~i 126 (499)
T 2dhr_A 53 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 126 (499)
T ss_dssp GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT----CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCE
T ss_pred hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC----CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCE
Confidence 35688999999999 89999999999999999999542 57899998765432 1233556666643 34555
Q ss_pred CHHHHHHHHHHcCCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCC
Q 007952 82 TVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPT 160 (583)
Q Consensus 82 Tv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPt 160 (583)
.+.|++......+.. .....++..+.+.+++. .|||||+|+..++++...+|++ |||+.
T Consensus 127 l~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~------------------~Ldg~~~~~~viviAatn~p~~--LD~aL 186 (499)
T 2dhr_A 127 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV------------------EMDGFEKDTAIVVMAATNRPDI--LDPAL 186 (499)
T ss_dssp EEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHH------------------HGGGCCSSCCCEEEECCSCGGG--SCTTT
T ss_pred EEEehHHHHHHhhccCcCCCcHHHHHHHHHHHH------------------HhcccccCccEEEEEecCChhh--cCccc
Confidence 555555321111100 00112233333333332 4788999998899899999987 78887
Q ss_pred C
Q 007952 161 S 161 (583)
Q Consensus 161 s 161 (583)
.
T Consensus 187 l 187 (499)
T 2dhr_A 187 L 187 (499)
T ss_dssp S
T ss_pred c
Confidence 5
No 179
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.20 E-value=5.5e-07 Score=84.26 Aligned_cols=33 Identities=24% Similarity=0.371 Sum_probs=30.9
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 11 NGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 11 ~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
+++++++.+| +++|+||||||||||+++|.+.+
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHT
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999 99999999999999999999855
No 180
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.19 E-value=7.8e-07 Score=95.72 Aligned_cols=70 Identities=13% Similarity=0.255 Sum_probs=50.7
Q ss_pred hCCCEEEEeCCCCCCCH-HHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcCeEEE-EcCCeEEEEcChh
Q 007952 149 INPSLLFLDEPTSGLDS-TTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLIL-LGKGSLLYFGKAS 218 (583)
Q Consensus 149 ~~p~illLDEPtsgLD~-~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~-L~~G~iv~~G~~~ 218 (583)
.+|++|++||+..-.+. .++..+.+.+.++.+.|+.||+++|.+..++..+.+++.- +..|.++..++++
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~ 264 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPD 264 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCC
Confidence 38999999999887764 6788899999998888999999999865433222233222 3557777777654
No 181
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.18 E-value=3.2e-07 Score=87.79 Aligned_cols=136 Identities=17% Similarity=0.226 Sum_probs=76.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHHHHHHHHHcCCCCCCCH
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTK 101 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~l~~~~~~~~~~~~~~ 101 (583)
+++|+|||||||||+.+.|++ + |...+++..+.+... .+.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-l------g~~~id~d~~~~~~~-----------------------------~~~---- 43 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-L------GVPLVDADVVAREVV-----------------------------AKD---- 43 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-T------TCCEEEHHHHHHHTT-----------------------------CSS----
T ss_pred EEEEECCCCCCHHHHHHHHHH-C------CCcccchHHHHHHHc-----------------------------cCC----
Confidence 689999999999999999997 2 333343322110000 000
Q ss_pred HHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC
Q 007952 102 QQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA 181 (583)
Q Consensus 102 ~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~ 181 (583)
.....++.+.+|... -.+.|+.+|..++.....+|+.+.++ ++.++|.....+.+.++.. .
T Consensus 44 ---~~~~~~i~~~~g~~~------------~~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~--~ 104 (206)
T 1jjv_A 44 ---SPLLSKIVEHFGAQI------------LTEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ--T 104 (206)
T ss_dssp ---CHHHHHHHHHHCTTC------------C------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--C
T ss_pred ---hHHHHHHHHHhCHHH------------hccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--C
Confidence 012344556666431 13678888999988888887654333 3345666555555544332 2
Q ss_pred CcEEEEEecCCChH-HHhhcCeEEEEcCCeEEEEcChhhHHHH
Q 007952 182 GKTVVTTIHQPSSR-LFHKFDKLILLGKGSLLYFGKASEAMAY 223 (583)
Q Consensus 182 g~tii~~~H~~~~~-i~~~~D~v~~L~~G~iv~~G~~~~~~~~ 223 (583)
+.++|+.+|...+. ....||.+++++ .+++...+.
T Consensus 105 ~~~vv~~~~~l~e~~~~~~~d~vi~l~-------~~~e~~~~R 140 (206)
T 1jjv_A 105 APYTLFVVPLLIENKLTALCDRILVVD-------VSPQTQLAR 140 (206)
T ss_dssp SSEEEEECTTTTTTTCGGGCSEEEEEE-------CCHHHHHHH
T ss_pred CCEEEEEechhhhcCcHhhCCEEEEEE-------CCHHHHHHH
Confidence 56888888875432 246788887774 455555444
No 182
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.14 E-value=9.9e-07 Score=84.09 Aligned_cols=42 Identities=29% Similarity=0.175 Sum_probs=24.5
Q ss_pred CccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 3 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 3 ~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
+.+....++|+|+++++|++++|+|++||||||+.+.|++.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 8 SSGVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ----------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 345567999999999999999999999999999999999743
No 183
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=98.13 E-value=1.7e-05 Score=82.38 Aligned_cols=139 Identities=18% Similarity=0.192 Sum_probs=78.2
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHHHHHHHHHcC
Q 007952 15 GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLR 94 (583)
Q Consensus 15 ~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~l~~~~~~~ 94 (583)
+-+++|+++.|.||+|+|||||+..++.....+...| | ....+.|+.-+..+ ...+-......+.
T Consensus 117 GGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~g-----g------~~~~vlyi~~E~~~----~~~~l~~~~~~~g 181 (343)
T 1v5w_A 117 GGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGG-----Y------PGGKIIFIDTENTF----RPDRLRDIADRFN 181 (343)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTT-----B------CCCEEEEEESSSCC----CHHHHHHHHHHTT
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccC-----C------CCCeEEEEECCCCC----CHHHHHHHHHHcC
Confidence 5689999999999999999999999987421111100 0 01235565554421 2222222222211
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHH-HHHHHHHHHH----hCCCEEEEeCCCCCCCHH---
Q 007952 95 LPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER-KRVCIGNEII----INPSLLFLDEPTSGLDST--- 166 (583)
Q Consensus 95 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGer-qRv~ia~~L~----~~p~illLDEPtsgLD~~--- 166 (583)
.+. +++++.+-+ .+..++.+. +.+..++.++ .+++++++|+.++-.+..
T Consensus 182 ----~~~-------~~~l~~l~~------------~~~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~ 238 (343)
T 1v5w_A 182 ----VDH-------DAVLDNVLY------------ARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSG 238 (343)
T ss_dssp ----CCH-------HHHHHTEEE------------EECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCG
T ss_pred ----CCH-------HHHHhceeE------------eecCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcc
Confidence 111 123332211 112233322 4455566666 569999999999865432
Q ss_pred ---------HHHHHHHHHHHHHHC-CcEEEEEecC
Q 007952 167 ---------TALRIVQMLQDIAEA-GKTVVTTIHQ 191 (583)
Q Consensus 167 ---------~~~~i~~~l~~l~~~-g~tii~~~H~ 191 (583)
...+++..|++++++ |.+||++.|-
T Consensus 239 ~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~ 273 (343)
T 1v5w_A 239 RGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQM 273 (343)
T ss_dssp GGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeec
Confidence 134556666666654 8898888885
No 184
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.13 E-value=1.6e-05 Score=82.99 Aligned_cols=159 Identities=16% Similarity=0.169 Sum_probs=81.9
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCC----ccccccEEEEccCCC-CCCCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSLKSKIGFVTQDDV-LFPHL 81 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~----~~~~~~i~yv~Q~~~-~~~~l 81 (583)
..+|++++++++ .++|+|++|||||||++.|+|....|..+|.+.-....+. .......+...+.+. .+.+.
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDF 100 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCH
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCH
Confidence 468999999998 8999999999999999999995432333444322211110 000122333333221 11110
Q ss_pred -CHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCC----C----------------ccccccccCcc---CcccChHH
Q 007952 82 -TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL----E----------------RCQDTMIGGSF---VRGVSGGE 137 (583)
Q Consensus 82 -Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL----~----------------~~~~~~ig~~~---~~~LSgGe 137 (583)
.+++.+. ++.....|- + ...|+. |-.. ..+-++.+
T Consensus 101 ~~v~~~i~--------------------~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtP-G~~~~~~~~q~~~~~ 159 (360)
T 3t34_A 101 AAVRKEIQ--------------------DETDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLP-GLTKVAVDGQSDSIV 159 (360)
T ss_dssp HHHHHHHH--------------------HHHHHTSCTTCCCCCSCEEEEEEETTSCSEEEEECC-CBCSSCCTTCCSSHH
T ss_pred HHHHHHHH--------------------HHHHHhcCCCCCcccceEEEEEeCCCCCCeEEEECC-CCCcCCcCCCchhHH
Confidence 1111111 111111110 0 011211 1100 12357788
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCC-cEEEEEec
Q 007952 138 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG-KTVVTTIH 190 (583)
Q Consensus 138 rqRv~ia~~L~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g-~tii~~~H 190 (583)
+++..+++..+.+|+++++.-..+..|..+ ....+.++.+...| .+|++.+.
T Consensus 160 ~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 160 KDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp HHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred HHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 999999999999999877774334455443 45566777766555 46666665
No 185
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.10 E-value=7.3e-07 Score=84.11 Aligned_cols=25 Identities=40% Similarity=0.672 Sum_probs=23.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 20 GEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 20 Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
|++++|+||||||||||+++|+|..
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 6789999999999999999999965
No 186
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.09 E-value=6.4e-06 Score=86.03 Aligned_cols=44 Identities=14% Similarity=0.068 Sum_probs=36.1
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH---CCcEEEEEecCCC
Q 007952 149 INPSLLFLDEPTSGLDSTTALRIVQMLQDIAE---AGKTVVTTIHQPS 193 (583)
Q Consensus 149 ~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~---~g~tii~~~H~~~ 193 (583)
.+|.++++||+... |......+.+.+.++.. .+.++|+++|++.
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence 45889999999876 88888888888877665 5788999999863
No 187
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.09 E-value=7.8e-07 Score=83.53 Aligned_cols=37 Identities=22% Similarity=0.281 Sum_probs=29.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEEC
Q 007952 19 PGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN 56 (583)
Q Consensus 19 ~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~ 56 (583)
+|++++|+||||||||||++.|++... +...|.|...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~-~~~~~~i~~t 40 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHP-DRFAYPIPHT 40 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCT-TTEECCCCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC-ccEEEeeecc
Confidence 689999999999999999999998642 2245555443
No 188
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=98.07 E-value=4.6e-06 Score=85.61 Aligned_cols=131 Identities=12% Similarity=0.135 Sum_probs=84.6
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHHHH
Q 007952 8 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETL 87 (583)
Q Consensus 8 ~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~l 87 (583)
.-|+++.+-+++|+++.|.|++|+|||||+..++.... ..| ..+.|+.=+ ++..+..
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a---~~g--------------~~vl~~slE------~s~~~l~ 112 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMS---DND--------------DVVNLHSLE------MGKKENI 112 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHH---TTT--------------CEEEEEESS------SCHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH---HcC--------------CeEEEEECC------CCHHHHH
Confidence 35777777799999999999999999999988875221 111 134444422 3433322
Q ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 007952 88 TYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTT 167 (583)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~~ 167 (583)
.+.......+++.+..+ | . ..||.+|++|+..|...+.++++++.|+|...
T Consensus 113 ------------------~R~~~~~~~i~~~~l~~---~--~-~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~----- 163 (315)
T 3bh0_A 113 ------------------KRLIVTAGSINAQKIKA---A--R-RDFASEDWGKLSMAIGEISNSNINIFDKAGQS----- 163 (315)
T ss_dssp ------------------HHHHHHHTTCCHHHHHS---C--H-HHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB-----
T ss_pred ------------------HHHHHHHcCCCHHHHhc---C--C-CCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC-----
Confidence 22222222222222211 0 0 13999999999999999999999999998643
Q ss_pred HHHHHHHHHHHHHC-CcE--EEEEec
Q 007952 168 ALRIVQMLQDIAEA-GKT--VVTTIH 190 (583)
Q Consensus 168 ~~~i~~~l~~l~~~-g~t--ii~~~H 190 (583)
..++.+.+++++++ |.. +|++-|
T Consensus 164 ~~~i~~~i~~l~~~~~~~~~lVVID~ 189 (315)
T 3bh0_A 164 VNYIWSKTRQTKRKNPGKRVIVMIDY 189 (315)
T ss_dssp HHHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 45567777777654 666 777765
No 189
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=98.04 E-value=2.1e-05 Score=80.94 Aligned_cols=139 Identities=22% Similarity=0.284 Sum_probs=78.0
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHHHHHHHHHcC
Q 007952 15 GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLR 94 (583)
Q Consensus 15 ~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~l~~~~~~~ 94 (583)
+-+++|+++.|.||+|+|||||+..++.....+...| | ....+.|+.-+..+ ...+-......+.
T Consensus 102 GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~g-----g------~~~~vlyi~~e~~~----~~~~l~~~~~~~g 166 (324)
T 2z43_A 102 GGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKG-----G------LSGKAVYIDTEGTF----RWERIENMAKALG 166 (324)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGT-----C------CSCEEEEEESSSCC----CHHHHHHHHHHTT
T ss_pred CCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccC-----C------CCCeEEEEECCCCC----CHHHHHHHHHHhC
Confidence 5789999999999999999999999886432111111 1 01235555544322 1222222222211
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChH-HHHHHHHHHHHH---hCCCEEEEeCCCCCCCH-----
Q 007952 95 LPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG-ERKRVCIGNEII---INPSLLFLDEPTSGLDS----- 165 (583)
Q Consensus 95 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgG-erqRv~ia~~L~---~~p~illLDEPtsgLD~----- 165 (583)
.+. +++++.+-+ .+..++. +.+.+..++.++ .+|+++++|+.++-.+.
T Consensus 167 ----~~~-------~~~~~~l~~------------~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~ 223 (324)
T 2z43_A 167 ----LDI-------DNVMNNIYY------------IRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGR 223 (324)
T ss_dssp ----CCH-------HHHHHTEEE------------EECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTT
T ss_pred ----CCH-------HHHhccEEE------------EeCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCc
Confidence 111 112222111 1122333 235677777777 57999999999975532
Q ss_pred ---HH----HHHHHHHHHHHHHC-CcEEEEEecC
Q 007952 166 ---TT----ALRIVQMLQDIAEA-GKTVVTTIHQ 191 (583)
Q Consensus 166 ---~~----~~~i~~~l~~l~~~-g~tii~~~H~ 191 (583)
.. ..+++..|++++++ +.+||++.|-
T Consensus 224 g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~ 257 (324)
T 2z43_A 224 ENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQV 257 (324)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcce
Confidence 11 24555666666654 8899988774
No 190
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.03 E-value=1.8e-06 Score=97.58 Aligned_cols=131 Identities=17% Similarity=0.107 Sum_probs=75.1
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCc----cccccEEEEccCCCCCCCCCHHHHHHH
Q 007952 14 TGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLTVKETLTY 89 (583)
Q Consensus 14 s~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~----~~~~~i~yv~Q~~~~~~~lTv~e~l~~ 89 (583)
|+.+++|+.++|+|++|+|||||++.|++........|+| .+|....+ +.++.+++..|...+... +++.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~-~~~~---- 76 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFR-GHRV---- 76 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEET-TEEE----
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeC-CEEE----
Confidence 4567899999999999999999999999643221346777 55654432 123445555554332211 1100
Q ss_pred HHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHH
Q 007952 90 AALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTAL 169 (583)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illLDEPtsgLD~~~~~ 169 (583)
...|+. |.. .++ .......-..+..++++| |+.|+|+.+.
T Consensus 77 -----------------------------nliDTp-G~~---~f~-----~~~~~~l~~ad~~ilVvD-~~~g~~~qt~- 116 (665)
T 2dy1_A 77 -----------------------------FLLDAP-GYG---DFV-----GEIRGALEAADAALVAVS-AEAGVQVGTE- 116 (665)
T ss_dssp -----------------------------EEEECC-CSG---GGH-----HHHHHHHHHCSEEEEEEE-TTTCSCHHHH-
T ss_pred -----------------------------EEEeCC-Ccc---chH-----HHHHHHHhhcCcEEEEEc-CCcccchhHH-
Confidence 011211 100 111 112222235678889999 9999998776
Q ss_pred HHHHHHHHHHHCCcEEEEEecCCC
Q 007952 170 RIVQMLQDIAEAGKTVVTTIHQPS 193 (583)
Q Consensus 170 ~i~~~l~~l~~~g~tii~~~H~~~ 193 (583)
+.++.+.+.+.++|++.|..+
T Consensus 117 ---~~~~~~~~~~ip~ilv~NKiD 137 (665)
T 2dy1_A 117 ---RAWTVAERLGLPRMVVVTKLD 137 (665)
T ss_dssp ---HHHHHHHHTTCCEEEEEECGG
T ss_pred ---HHHHHHHHccCCEEEEecCCc
Confidence 333444446888888888754
No 191
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.99 E-value=5.7e-06 Score=84.34 Aligned_cols=63 Identities=13% Similarity=0.093 Sum_probs=44.3
Q ss_pred cChHHHHHHHHHHHHH--hCCCEEEEeCCCCCCCHHH-HHHHHHHHHHHHHC-Cc--EEEEEecCCChHHHhhcCeE
Q 007952 133 VSGGERKRVCIGNEII--INPSLLFLDEPTSGLDSTT-ALRIVQMLQDIAEA-GK--TVVTTIHQPSSRLFHKFDKL 203 (583)
Q Consensus 133 LSgGerqRv~ia~~L~--~~p~illLDEPtsgLD~~~-~~~i~~~l~~l~~~-g~--tii~~~H~~~~~i~~~~D~v 203 (583)
+|+|++ .+++.+. ..|.++++ +.+|... ...+.+.++++++. |. .+.++.|+- ..+.+++|.+
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g-~~v~~l~~~i 169 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETG-LNVDTIAAIV 169 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTT-TTHHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCC-CCHHHHHHHH
Confidence 898887 4566666 68999999 7899877 67788888888764 43 555666663 3455566654
No 192
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.97 E-value=2.2e-06 Score=83.68 Aligned_cols=44 Identities=25% Similarity=0.220 Sum_probs=36.7
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccC
Q 007952 11 NGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY 60 (583)
Q Consensus 11 ~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~ 60 (583)
-+-+...++|++++|.|+||||||||+++|+|. +|+|.+++.|.
T Consensus 11 ~~~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~------~g~v~~~~~~~ 54 (230)
T 2vp4_A 11 GTKYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY------KNDICLLTEPV 54 (230)
T ss_dssp -CCBTTTCCCEEEEEECSTTSCHHHHHHTTGGG------TTTEEEECCTH
T ss_pred CCccCCCCCceEEEEECCCCCCHHHHHHHHHhc------cCCeEEEecCH
Confidence 344556689999999999999999999999984 58898888764
No 193
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.93 E-value=7.9e-07 Score=88.31 Aligned_cols=40 Identities=40% Similarity=0.611 Sum_probs=35.9
Q ss_pred cccceeeceEEEEeC---CeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 5 EEKDILNGITGSVNP---GEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 5 ~~~~iL~~vs~~i~~---Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
+++.+|+|+|+++++ |+.++|+|++||||||+.++|++.+
T Consensus 30 ~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 30 EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp --CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 457799999999999 9999999999999999999999843
No 194
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.91 E-value=6e-05 Score=76.00 Aligned_cols=73 Identities=18% Similarity=0.322 Sum_probs=45.0
Q ss_pred ChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHH----------HHHHHHHHHHHHHH----CCcEEEEEecCCC---hHH
Q 007952 134 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDST----------TALRIVQMLQDIAE----AGKTVVTTIHQPS---SRL 196 (583)
Q Consensus 134 SgGerqRv~ia~~L~~~p~illLDEPtsgLD~~----------~~~~i~~~l~~l~~----~g~tii~~~H~~~---~~i 196 (583)
+++++.|..++.+...+|.+|++||+.+-++.. ....++..+..... .+..||.++++|. ..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 356677777777778899999999998776532 22234444443321 2356788888753 344
Q ss_pred HhhcCeEEEE
Q 007952 197 FHKFDKLILL 206 (583)
Q Consensus 197 ~~~~D~v~~L 206 (583)
.+-||+.+.+
T Consensus 177 ~~R~~~~i~~ 186 (297)
T 3b9p_A 177 LRRFTKRVYV 186 (297)
T ss_dssp HHHCCEEEEC
T ss_pred HhhCCeEEEe
Confidence 4556665444
No 195
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.87 E-value=4.5e-06 Score=80.17 Aligned_cols=27 Identities=33% Similarity=0.481 Sum_probs=25.4
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 18 NPGEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 18 ~~Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
++|++++|+||||||||||++.|++..
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 689999999999999999999999865
No 196
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.79 E-value=6.5e-06 Score=76.32 Aligned_cols=37 Identities=24% Similarity=0.362 Sum_probs=31.4
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccC
Q 007952 18 NPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY 60 (583)
Q Consensus 18 ~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~ 60 (583)
.+|++++|+|||||||||+.+.|++.+ |.+.+++.++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~------g~~~i~~d~~ 42 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL------HAAFLDGDFL 42 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH------TCEEEEGGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh------CcEEEeCccc
Confidence 469999999999999999999999842 6778877654
No 197
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.78 E-value=9.4e-06 Score=77.51 Aligned_cols=30 Identities=27% Similarity=0.368 Sum_probs=25.5
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 15 GSVNPGEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 15 ~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
....+|++++|+||||||||||++.|.+..
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 334589999999999999999999999854
No 198
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.76 E-value=1.5e-05 Score=76.19 Aligned_cols=31 Identities=29% Similarity=0.324 Sum_probs=27.4
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 14 TGSVNPGEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 14 s~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
--++++|++++|+|+||||||||.+.|++.+
T Consensus 15 ~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 15 VPRGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCCSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred cccCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3467889999999999999999999999853
No 199
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.76 E-value=2.3e-06 Score=88.02 Aligned_cols=40 Identities=20% Similarity=0.252 Sum_probs=33.1
Q ss_pred ccceeeceEEEEeCCe------EEEEECCCCCcHHHHHHHHhCCCC
Q 007952 6 EKDILNGITGSVNPGE------VLALMGPSGSGKTTLLNLLSGRLM 45 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge------~~~i~G~nGaGKSTLl~~l~g~~~ 45 (583)
++..|++++..+..++ ++||+||||||||||+++|.+.+.
T Consensus 72 ~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 72 ARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3456777777777776 999999999999999999998653
No 200
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.74 E-value=9.2e-05 Score=79.52 Aligned_cols=170 Identities=15% Similarity=0.221 Sum_probs=94.2
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHHHHH
Q 007952 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLT 88 (583)
Q Consensus 9 iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~l~ 88 (583)
-|+.+.+=+++|+++.|.|++|+|||||..-++.... ...| ..+.|+.=+ ++..+...
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a--~~~g--------------~~vl~~slE------~~~~~l~~ 246 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAA--LKEG--------------VGVGIYSLE------MPAAQLTL 246 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHH--HTTC--------------CCEEEEESS------SCHHHHHH
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHH--HhCC--------------CeEEEEECC------CCHHHHHH
Confidence 4666666799999999999999999999988886321 0011 113332221 22222221
Q ss_pred H--HHHcCCC------CCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHH--hCCCEEEEeC
Q 007952 89 Y--AALLRLP------NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEII--INPSLLFLDE 158 (583)
Q Consensus 89 ~--~~~~~~~------~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~--~~p~illLDE 158 (583)
- +.....+ ..++.++ .+++.+.++.+.-.+ -.+- ...++|..+.+ +.++.+. .+|+++++|.
T Consensus 247 R~~~~~~~i~~~~l~~g~l~~~~-~~~~~~a~~~l~~~~---l~i~--d~~~~s~~~l~--~~~~~l~~~~~~~lIvID~ 318 (444)
T 2q6t_A 247 RMMCSEARIDMNRVRLGQLTDRD-FSRLVDVASRLSEAP---IYID--DTPDLTLMEVR--ARARRLVSQNQVGLIIIDY 318 (444)
T ss_dssp HHHHHHTTCCTTTCCGGGCCHHH-HHHHHHHHHHHHTSC---EEEE--CCTTCBHHHHH--HHHHHHHHHSCCCEEEEEC
T ss_pred HHHHHHcCCCHHHHhCCCCCHHH-HHHHHHHHHHHhcCC---EEEE--CCCCCCHHHHH--HHHHHHHHHcCCCEEEEcC
Confidence 0 1111110 0123333 233444444432111 1111 12356766653 4455555 4799999999
Q ss_pred CCCCCCH----------HHHHHHHHHHHHHHHC-CcEEEEEecC-----------CC-------hHHHhhcCeEEEEcC
Q 007952 159 PTSGLDS----------TTALRIVQMLQDIAEA-GKTVVTTIHQ-----------PS-------SRLFHKFDKLILLGK 208 (583)
Q Consensus 159 PtsgLD~----------~~~~~i~~~l~~l~~~-g~tii~~~H~-----------~~-------~~i~~~~D~v~~L~~ 208 (583)
.+.=.+. ....++.+.|+.++++ +.+||+++|- |. ..+.+.+|.|+.|..
T Consensus 319 l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L~r 397 (444)
T 2q6t_A 319 LQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIYR 397 (444)
T ss_dssp GGGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEEEE
T ss_pred hhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEEec
Confidence 8764432 1235677888888765 8999999883 21 024567888888853
No 201
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.67 E-value=8e-06 Score=77.94 Aligned_cols=42 Identities=38% Similarity=0.290 Sum_probs=33.6
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCcc
Q 007952 16 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP 59 (583)
Q Consensus 16 ~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~ 59 (583)
..++|++++|+|+||||||||++.|++.+. +.+|.|.+.+.+
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~--~~~~~v~~~~~d 59 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLR--EQGISVCVFHMD 59 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHH--HTTCCEEEEEGG
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHh--hcCCeEEEeccC
Confidence 357899999999999999999999998552 245777766544
No 202
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.61 E-value=7.1e-06 Score=85.30 Aligned_cols=27 Identities=22% Similarity=0.501 Sum_probs=23.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 18 NPGEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 18 ~~Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
+++..+.|.||+|+|||||++.+++..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 457799999999999999999999743
No 203
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.61 E-value=3.3e-05 Score=70.27 Aligned_cols=30 Identities=27% Similarity=0.524 Sum_probs=26.0
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHh
Q 007952 11 NGITGSVNPGEVLALMGPSGSGKTTLLNLLS 41 (583)
Q Consensus 11 ~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~ 41 (583)
++.++++.+| +++|+|||||||||++++|.
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 4566777766 99999999999999999987
No 204
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.60 E-value=9.7e-05 Score=78.84 Aligned_cols=26 Identities=35% Similarity=0.326 Sum_probs=23.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 19 PGEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 19 ~Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
++.+++++||+||||||++..|++.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999999999754
No 205
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.56 E-value=9.7e-05 Score=75.04 Aligned_cols=29 Identities=28% Similarity=0.560 Sum_probs=25.8
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 16 SVNPGEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 16 ~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
.++++..+.|.||+|+|||||.++|++..
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 46788899999999999999999999843
No 206
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.53 E-value=1.2e-05 Score=88.56 Aligned_cols=43 Identities=35% Similarity=0.539 Sum_probs=35.4
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCccc-EEE-ECCccC
Q 007952 16 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGG-SIT-YNDHPY 60 (583)
Q Consensus 16 ~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G-~I~-~~g~~~ 60 (583)
.+++|++++|+|+||||||||+++|+|++. +.+| ++. ++|.++
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~--~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLM--EMGGRCVTLLDGDIV 409 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHH--TTCSSCEEEESSHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhc--ccCCceEEEECCcHH
Confidence 578999999999999999999999999763 3454 674 887654
No 207
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.52 E-value=9.7e-06 Score=75.57 Aligned_cols=40 Identities=33% Similarity=0.354 Sum_probs=30.9
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCCCCCCCccc--EEEECCccC
Q 007952 18 NPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGG--SITYNDHPY 60 (583)
Q Consensus 18 ~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G--~I~~~g~~~ 60 (583)
++|++++|+|++||||||+.+.|++.+. + .| .+.+++..+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~--~-~g~~~i~~d~~~~ 44 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLV--C-HGIPCYTLDGDNI 44 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHH--H-TTCCEEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh--h-CCCcEEEECChHH
Confidence 4799999999999999999999998542 1 35 566666544
No 208
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.51 E-value=0.00035 Score=68.85 Aligned_cols=34 Identities=29% Similarity=0.653 Sum_probs=24.2
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 9 iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
.++++++..++| +.|.||+|+|||||+++|++..
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHc
Confidence 345556666666 8899999999999999999843
No 209
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.50 E-value=6e-06 Score=79.82 Aligned_cols=56 Identities=25% Similarity=0.303 Sum_probs=40.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCC-CCcccEEEE--------CCccCCc-----cccccEEEEccCC
Q 007952 20 GEVLALMGPSGSGKTTLLNLLSGRLME-PTVGGSITY--------NDHPYSK-----SLKSKIGFVTQDD 75 (583)
Q Consensus 20 Ge~~~i~G~nGaGKSTLl~~l~g~~~~-~~~~G~I~~--------~g~~~~~-----~~~~~i~yv~Q~~ 75 (583)
+.+++|+|||||||||+.+.|++.+.. ..++|++.. +|.++.+ ..++.+++++|++
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 74 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVST 74 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeecc
Confidence 568999999999999999999975321 135688776 6665542 2456688888764
No 210
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.47 E-value=4.9e-05 Score=70.63 Aligned_cols=22 Identities=41% Similarity=0.742 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
.++|+|++|+|||||++.++|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
No 211
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.45 E-value=4.5e-05 Score=70.27 Aligned_cols=26 Identities=35% Similarity=0.561 Sum_probs=23.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 19 PGEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 19 ~Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
.|++++|+||||||||||+++|++.+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 47889999999999999999999854
No 212
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.42 E-value=3.1e-05 Score=75.63 Aligned_cols=66 Identities=15% Similarity=0.093 Sum_probs=39.5
Q ss_pred ChHHHHHHHHHHHHHhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhhcC
Q 007952 134 SGGERKRVCIGNEIIINPSLLFLDEPTS-GLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFD 201 (583)
Q Consensus 134 SgGerqRv~ia~~L~~~p~illLDEPts-gLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D 201 (583)
+.|...+.. ...+.+-+++++||.-. ++|.......++.+.+...+-++++++---+...+.++++
T Consensus 162 Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~~~~~~~~~~ 228 (235)
T 3llm_A 162 TVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEYFF 228 (235)
T ss_dssp EHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCHHHHHHTT
T ss_pred CHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCCCHHHHHHHcC
Confidence 456555543 33578899999999976 6887766555555544333334566554333444555554
No 213
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.42 E-value=0.00013 Score=84.21 Aligned_cols=30 Identities=30% Similarity=0.505 Sum_probs=27.4
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 15 GSVNPGEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 15 ~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
+.+++|+.++|.||||+|||||+++|++..
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l 262 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTT
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHc
Confidence 467899999999999999999999999964
No 214
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.35 E-value=0.001 Score=64.72 Aligned_cols=43 Identities=14% Similarity=0.157 Sum_probs=29.0
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC--CcEEEEEecC
Q 007952 149 INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA--GKTVVTTIHQ 191 (583)
Q Consensus 149 ~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~--g~tii~~~H~ 191 (583)
.+|+++++..+.+.++......+..+++.+... ..++|+.+|-
T Consensus 111 ~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~ 155 (239)
T 3lxx_A 111 PGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTRK 155 (239)
T ss_dssp TCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEECG
T ss_pred CCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeCC
Confidence 368999999998888886655554444433221 3578888883
No 215
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.31 E-value=0.00027 Score=66.82 Aligned_cols=24 Identities=42% Similarity=0.526 Sum_probs=21.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhCCC
Q 007952 21 EVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 21 e~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
.-+.|.||+|+|||||++.|+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 678999999999999999999743
No 216
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.30 E-value=1.9e-05 Score=81.97 Aligned_cols=50 Identities=22% Similarity=0.315 Sum_probs=39.9
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND 57 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g 57 (583)
.+.+++++++..++|.+++|+|++|||||||++.|++... +.+|+|.+-+
T Consensus 42 ~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~--~~~~~v~v~~ 91 (341)
T 2p67_A 42 STQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLI--REGLKVAVIA 91 (341)
T ss_dssp HHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHH--HTTCCEEEEE
T ss_pred HHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHH--hcCCeEEEEe
Confidence 3467889999999999999999999999999999998542 2345554433
No 217
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.29 E-value=9.6e-05 Score=78.98 Aligned_cols=30 Identities=27% Similarity=0.531 Sum_probs=27.1
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 15 GSVNPGEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 15 ~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
+++.+|++++|+|||||||||||++|++..
T Consensus 21 ~~~~~~~~~~i~G~nG~GKstll~ai~~~~ 50 (430)
T 1w1w_A 21 VGFGESNFTSIIGPNGSGKSNMMDAISFVL 50 (430)
T ss_dssp EECTTCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHhhh
Confidence 557789999999999999999999999855
No 218
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.29 E-value=0.00081 Score=68.61 Aligned_cols=46 Identities=13% Similarity=0.198 Sum_probs=35.5
Q ss_pred HhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHHCCcEEEEEecCCC
Q 007952 148 IINPSLLFLDEPTS-GLDSTTALRIVQMLQDIAEAGKTVVTTIHQPS 193 (583)
Q Consensus 148 ~~~p~illLDEPts-gLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~ 193 (583)
..+|++|++||+.. .-|...+..+...+..+.+.|+.+|++++.+.
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~ 142 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHP 142 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCG
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCCh
Confidence 35799999999866 23447888899999988877877877777543
No 219
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.29 E-value=9e-05 Score=72.35 Aligned_cols=36 Identities=33% Similarity=0.409 Sum_probs=26.4
Q ss_pred eeeceEEEEe---CCeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 9 ILNGITGSVN---PGEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 9 iL~~vs~~i~---~Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
=|.++|++++ +|.+++|.|++||||||+++.|+..+
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4778888887 99999999999999999999999865
No 220
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.27 E-value=0.00014 Score=69.46 Aligned_cols=31 Identities=26% Similarity=0.472 Sum_probs=26.1
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHhC
Q 007952 11 NGITGSVNPGEVLALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 11 ~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g 42 (583)
++.++++.+| +++|+|||||||||++++|.-
T Consensus 15 ~~~~i~f~~~-~~~I~G~NgsGKStil~ai~~ 45 (203)
T 3qks_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (203)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred cceEEEeCCC-eEEEEcCCCCCHHHHHHHHHH
Confidence 4566777765 999999999999999999873
No 221
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.27 E-value=0.0037 Score=64.99 Aligned_cols=28 Identities=36% Similarity=0.600 Sum_probs=25.4
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhC
Q 007952 15 GSVNPGEVLALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 15 ~~i~~Ge~~~i~G~nGaGKSTLl~~l~g 42 (583)
+=+++|+++.|.|++|+|||||...++.
T Consensus 58 GGl~~G~ii~I~G~pGsGKTtLal~la~ 85 (356)
T 1u94_A 58 GGLPMGRIVEIYGPESSGKTTLTLQVIA 85 (356)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999999988875
No 222
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.24 E-value=0.0016 Score=66.55 Aligned_cols=28 Identities=29% Similarity=0.426 Sum_probs=25.8
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhC
Q 007952 15 GSVNPGEVLALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 15 ~~i~~Ge~~~i~G~nGaGKSTLl~~l~g 42 (583)
+-+++|+++.|.||+|+|||||...++.
T Consensus 93 GGl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 93 GGLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999999988874
No 223
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.23 E-value=0.00023 Score=76.29 Aligned_cols=67 Identities=18% Similarity=0.307 Sum_probs=37.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCC----------CCcccEEEECCccCC----ccccccEEEEccCCCCCCCCCHHHHH
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRLME----------PTVGGSITYNDHPYS----KSLKSKIGFVTQDDVLFPHLTVKETL 87 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~~~----------~~~~G~I~~~g~~~~----~~~~~~i~yv~Q~~~~~~~lTv~e~l 87 (583)
.++|+|+||+|||||+|.|+|.... .+..|.+.++|+++. ...++..++.+|....+..++..+++
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i 261 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSI 261 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHH
Confidence 7999999999999999999996420 134688999987541 12233344444544444444444444
Q ss_pred H
Q 007952 88 T 88 (583)
Q Consensus 88 ~ 88 (583)
.
T Consensus 262 ~ 262 (439)
T 1mky_A 262 E 262 (439)
T ss_dssp H
T ss_pred h
Confidence 3
No 224
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.23 E-value=0.0002 Score=69.04 Aligned_cols=44 Identities=11% Similarity=0.165 Sum_probs=31.1
Q ss_pred hCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHHCCcE-EEEEecCC
Q 007952 149 INPSLLFLDEPTSGL-DSTTALRIVQMLQDIAEAGKT-VVTTIHQP 192 (583)
Q Consensus 149 ~~p~illLDEPtsgL-D~~~~~~i~~~l~~l~~~g~t-ii~~~H~~ 192 (583)
.+|.++++||...-- +...+..+.+.+.+..+.++. +|++++.+
T Consensus 103 ~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~ 148 (242)
T 3bos_A 103 EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASAS 148 (242)
T ss_dssp GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSC
T ss_pred cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence 468999999965432 233377788888887776665 77777754
No 225
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=97.21 E-value=0.00045 Score=74.12 Aligned_cols=34 Identities=15% Similarity=0.114 Sum_probs=28.8
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhC
Q 007952 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 9 iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g 42 (583)
-|+.+.+=+++|+++.|.|++|+|||||.--++.
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 3555555689999999999999999999887775
No 226
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.20 E-value=4.3e-05 Score=84.25 Aligned_cols=48 Identities=29% Similarity=0.371 Sum_probs=38.6
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCc
Q 007952 8 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH 58 (583)
Q Consensus 8 ~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~ 58 (583)
.+++++++++ +|+.++|+||||+|||||+++|++... +..|+|..+|.
T Consensus 97 ~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~--~~~~~i~~~~~ 144 (543)
T 3m6a_A 97 LAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLG--RKFVRISLGGV 144 (543)
T ss_dssp HHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHT--CEEEEECCCC-
T ss_pred HHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcC--CCeEEEEeccc
Confidence 3567778888 899999999999999999999998653 34677776664
No 227
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.19 E-value=0.00075 Score=65.53 Aligned_cols=53 Identities=28% Similarity=0.382 Sum_probs=42.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEec---------CCChHHHhhcCeEEEEc
Q 007952 150 NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIH---------QPSSRLFHKFDKLILLG 207 (583)
Q Consensus 150 ~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H---------~~~~~i~~~~D~v~~L~ 207 (583)
+|+++++||--. |+. ++++.++.+++.|.+||++-| .+..++..++|+|.-|+
T Consensus 89 ~~dvViIDEaQ~-l~~----~~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDD----RICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCT----HHHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcH----HHHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 554 366677777778999999999 56677888999999875
No 228
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.17 E-value=0.00059 Score=68.10 Aligned_cols=28 Identities=32% Similarity=0.599 Sum_probs=23.9
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 17 VNPGEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 17 i~~Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
+.++.-+.|.||+|+|||||.+.++...
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3566679999999999999999999743
No 229
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.13 E-value=0.0001 Score=76.59 Aligned_cols=41 Identities=22% Similarity=0.314 Sum_probs=31.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccC
Q 007952 18 NPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY 60 (583)
Q Consensus 18 ~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~ 60 (583)
+++.+++|+|++|||||||+|.|+|... +.+|+|.+.+.+.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~--~~~~~v~V~~~dp 112 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLT--ERGHKLSVLAVDP 112 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEECCC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhh--hcCCeEEEEeecC
Confidence 4588999999999999999999998542 3456776655543
No 230
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.01 E-value=0.00048 Score=64.49 Aligned_cols=36 Identities=33% Similarity=0.518 Sum_probs=20.9
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
..+++++|+..++. .++++|++|+|||||++.+.+.
T Consensus 11 ~~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 11 RDVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 35789999998888 5689999999999999999974
No 231
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.99 E-value=0.00017 Score=68.17 Aligned_cols=37 Identities=30% Similarity=0.430 Sum_probs=31.9
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
-+.+++++|+..++++ ++++|++|+|||||++.+.+.
T Consensus 12 ~~~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 12 FSSVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp -CHHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcC
Confidence 4568899999988885 689999999999999999874
No 232
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.96 E-value=0.00034 Score=66.56 Aligned_cols=29 Identities=31% Similarity=0.456 Sum_probs=25.4
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 16 SVNPGEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 16 ~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
...+|.+++|+||||||||||.+.|+..+
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 45689999999999999999999999754
No 233
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.94 E-value=0.00038 Score=65.13 Aligned_cols=32 Identities=19% Similarity=0.352 Sum_probs=26.5
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHhCC
Q 007952 12 GITGSVNPGEVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 12 ~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
++|+...+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888899999999999999999999999964
No 234
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.88 E-value=0.00049 Score=63.39 Aligned_cols=27 Identities=37% Similarity=0.634 Sum_probs=23.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 18 NPGEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 18 ~~Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
++|..++|+|++|+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999999853
No 235
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.88 E-value=0.0057 Score=63.42 Aligned_cols=26 Identities=31% Similarity=0.625 Sum_probs=22.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCC
Q 007952 18 NPGEVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 18 ~~Ge~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
.+..-+.|.||+|+|||||.++|+..
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34567899999999999999999974
No 236
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.87 E-value=0.0045 Score=60.53 Aligned_cols=26 Identities=31% Similarity=0.470 Sum_probs=22.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCC
Q 007952 18 NPGEVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 18 ~~Ge~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
++..-+.|.||+|+|||||.+.++..
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 44456889999999999999999974
No 237
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.84 E-value=0.00022 Score=68.31 Aligned_cols=43 Identities=26% Similarity=0.211 Sum_probs=33.9
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCccc--EEEECCcc
Q 007952 15 GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGG--SITYNDHP 59 (583)
Q Consensus 15 ~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G--~I~~~g~~ 59 (583)
..+++|.+++|.|++||||||+.+.|++.+. +..| .+.++|..
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~--~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLV--RDRRVHAYRLDGDN 64 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHH--HHHCCCEEEECHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhc--cccCCcEEEECChH
Confidence 3467899999999999999999999998542 2356 67777544
No 238
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.81 E-value=0.0006 Score=71.32 Aligned_cols=31 Identities=23% Similarity=0.448 Sum_probs=27.6
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHh
Q 007952 10 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLS 41 (583)
Q Consensus 10 L~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~ 41 (583)
+++..+++.+| +++|.|||||||||+|.+|.
T Consensus 16 ~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 16 HVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred ccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 46778888876 99999999999999999986
No 239
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.80 E-value=0.00038 Score=72.70 Aligned_cols=32 Identities=22% Similarity=0.424 Sum_probs=30.5
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHhCC
Q 007952 12 GITGSVNPGEVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 12 ~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
|+++.+.+||.++|+||+|+|||||++.|++.
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~ 197 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQS 197 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHH
Confidence 89999999999999999999999999999863
No 240
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.74 E-value=0.0012 Score=68.35 Aligned_cols=27 Identities=33% Similarity=0.460 Sum_probs=23.3
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 18 NPGEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 18 ~~Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
..+..+.|.||+|+|||||++.++...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999999743
No 241
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.70 E-value=0.00046 Score=73.47 Aligned_cols=46 Identities=22% Similarity=0.047 Sum_probs=38.4
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccC
Q 007952 11 NGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY 60 (583)
Q Consensus 11 ~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~ 60 (583)
++++++ +|++++++|+|||||||++..|++.+. ..+|+|.+.+.+.
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~--~~g~~Vllvd~D~ 136 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK--GKGRRPLLVAADT 136 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHH--TTTCCEEEEECCS
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEeeccc
Confidence 577887 899999999999999999999998653 3467888877654
No 242
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.69 E-value=0.00062 Score=64.38 Aligned_cols=21 Identities=29% Similarity=0.544 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 007952 22 VLALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g 42 (583)
+++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999998
No 243
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.65 E-value=0.00019 Score=74.98 Aligned_cols=32 Identities=34% Similarity=0.479 Sum_probs=27.4
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
.+.+++++++.| +|+|+||+|||||++.|.|.
T Consensus 29 ~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~ 60 (361)
T 2qag_A 29 RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLT 60 (361)
T ss_dssp THHHHHCCEECE------EECCCTTSCHHHHHHHHTTC
T ss_pred CeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCC
Confidence 355678888876 99999999999999999884
No 244
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.63 E-value=0.00023 Score=73.70 Aligned_cols=37 Identities=27% Similarity=0.451 Sum_probs=33.6
Q ss_pred ceeeceEEEEeCCeE--EEEECCCCCcHHHHHHHHhCCC
Q 007952 8 DILNGITGSVNPGEV--LALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 8 ~iL~~vs~~i~~Ge~--~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
.+++++++.+++|+. ++|+|++||||||+.++|++.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 578888999999998 9999999999999999999854
No 245
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.58 E-value=0.005 Score=60.40 Aligned_cols=23 Identities=35% Similarity=0.525 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
-++|+|++|+|||||+|.|.|..
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47999999999999999999853
No 246
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.58 E-value=0.0011 Score=60.21 Aligned_cols=23 Identities=39% Similarity=0.667 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
.++|+|++|+|||||++.++|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999853
No 247
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.55 E-value=0.022 Score=58.09 Aligned_cols=28 Identities=29% Similarity=0.500 Sum_probs=23.7
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 17 VNPGEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 17 i~~Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
..+..-+.|.||+|+|||||.+.++...
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 42 RTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 3455678999999999999999999743
No 248
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.53 E-value=0.00027 Score=72.87 Aligned_cols=39 Identities=26% Similarity=0.605 Sum_probs=34.7
Q ss_pred ccceeeceEEEEeCCeE--EEEECCCCCcHHHHHHHHhCCC
Q 007952 6 EKDILNGITGSVNPGEV--LALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~--~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
...+++.++..++.|++ +.+.||+|+||||+++++++.+
T Consensus 30 ~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 30 QNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 45678888889999998 9999999999999999999854
No 249
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.52 E-value=0.00062 Score=67.18 Aligned_cols=47 Identities=23% Similarity=0.390 Sum_probs=35.6
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccC
Q 007952 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY 60 (583)
Q Consensus 9 iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~ 60 (583)
++++.+ ..+++.++.|+|+|||||||+.+.|+..+. .+.+.+++..+
T Consensus 22 ~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~l~----~~~~~~~~D~~ 68 (253)
T 2p5t_B 22 LTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ----GNIVIIDGDSF 68 (253)
T ss_dssp HHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHHTT----TCCEEECGGGG
T ss_pred HHccCC-cccCCeEEEEECCCCCCHHHHHHHHHHhcC----CCcEEEecHHH
Confidence 344444 567889999999999999999999998542 24567777544
No 250
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.52 E-value=0.00034 Score=71.01 Aligned_cols=46 Identities=22% Similarity=0.158 Sum_probs=35.9
Q ss_pred ec-eEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCcc
Q 007952 11 NG-ITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP 59 (583)
Q Consensus 11 ~~-vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~ 59 (583)
++ ++++.+ |++++++|++|+||||++..|++.+. ..+|+|.+.+.+
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~--~~g~~v~l~~~D 135 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYK--KKGFKVGLVGAD 135 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHH--HTTCCEEEEECC
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEecC
Confidence 45 777766 99999999999999999999998553 235666665544
No 251
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.50 E-value=0.0014 Score=61.04 Aligned_cols=29 Identities=41% Similarity=0.548 Sum_probs=25.8
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 16 SVNPGEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 16 ~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
..++|.+++|+|++||||||+.+.|++.+
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34579999999999999999999999854
No 252
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.50 E-value=0.0013 Score=61.04 Aligned_cols=25 Identities=32% Similarity=0.642 Sum_probs=22.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhC
Q 007952 18 NPGEVLALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 18 ~~Ge~~~i~G~nGaGKSTLl~~l~g 42 (583)
.+|.+++|.|++||||||+.+.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999999985
No 253
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.50 E-value=0.018 Score=62.50 Aligned_cols=34 Identities=24% Similarity=0.173 Sum_probs=28.0
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhC
Q 007952 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 9 iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g 42 (583)
-|+.+.+=+.+|+++.|.|++|+|||||+--++-
T Consensus 231 ~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 231 GINDKTLGARGGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp THHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred hhhHhhcccCCCeEEEEeecCCCCchHHHHHHHH
Confidence 3455545589999999999999999999877774
No 254
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.48 E-value=0.0028 Score=61.43 Aligned_cols=48 Identities=25% Similarity=0.342 Sum_probs=30.2
Q ss_pred HHHHHHhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHHCCcEEEEEec
Q 007952 143 IGNEIIINPSLLFLDEPTS-GLDSTTALRIVQMLQDIAEAGKTVVTTIH 190 (583)
Q Consensus 143 ia~~L~~~p~illLDEPts-gLD~~~~~~i~~~l~~l~~~g~tii~~~H 190 (583)
+..++..+|+++++||+-. ..+........+.+..+.+.|..++.++|
T Consensus 77 l~~~L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~N 125 (228)
T 2r8r_A 77 LDALLKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVN 125 (228)
T ss_dssp HHHHHHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEcc
Confidence 3334457899999999764 23433233333444445567888999988
No 255
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.44 E-value=0.0011 Score=62.66 Aligned_cols=24 Identities=29% Similarity=0.470 Sum_probs=21.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHhCC
Q 007952 20 GEVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 20 Ge~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
..+++|.|++||||||+.+.|++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999974
No 256
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.40 E-value=0.0014 Score=68.94 Aligned_cols=47 Identities=19% Similarity=0.310 Sum_probs=33.9
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHhCCCC---------CCCcccEEEECCc
Q 007952 12 GITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLM---------EPTVGGSITYNDH 58 (583)
Q Consensus 12 ~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~---------~~~~~G~I~~~g~ 58 (583)
.+-..+..|..++|+|+||+|||||+|.|+|... ..+..|.+.++|.
T Consensus 14 ~l~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 14 PIIGRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp --CCCSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred HHHhhccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 3455778899999999999999999999998521 1234677777664
No 257
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.36 E-value=0.011 Score=72.36 Aligned_cols=28 Identities=32% Similarity=0.515 Sum_probs=25.9
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHhCC
Q 007952 16 SVNPGEVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 16 ~i~~Ge~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
=+++|+++.|.||+|+|||||+..++..
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~ 755 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAA 755 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHH
Confidence 4999999999999999999999999863
No 258
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.36 E-value=0.002 Score=59.30 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=22.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 20 GEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 20 Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
|.++.|.|++||||||+.+.|+.++
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 5789999999999999999999754
No 259
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.35 E-value=0.0037 Score=63.61 Aligned_cols=51 Identities=20% Similarity=0.087 Sum_probs=29.6
Q ss_pred HhCCCEEEEeCCC-CCCCHHHHHHHHH-HHHHHHHCCcEEEEEecCCChHHHh
Q 007952 148 IINPSLLFLDEPT-SGLDSTTALRIVQ-MLQDIAEAGKTVVTTIHQPSSRLFH 198 (583)
Q Consensus 148 ~~~p~illLDEPt-sgLD~~~~~~i~~-~l~~l~~~g~tii~~~H~~~~~i~~ 198 (583)
+.++++|++||.- ..+|...+.+++. ++......++.+|+||+.+..++..
T Consensus 212 ~~~~~lLiiDdig~~~~~~~~~~~ll~~ll~~r~~~~~~~IitSN~~~~~l~~ 264 (308)
T 2qgz_A 212 VKNVPVLILDDIGAEQATSWVRDEVLQVILQYRMLEELPTFFTSNYSFADLER 264 (308)
T ss_dssp HHTSSEEEEETCCC------CTTTTHHHHHHHHHHHTCCEEEEESSCHHHHHT
T ss_pred hcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHH
Confidence 4578999999983 2445444444554 6655434466788888876555443
No 260
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.35 E-value=0.0018 Score=58.98 Aligned_cols=23 Identities=35% Similarity=0.411 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
+++|.|++||||||+.+.|+.++
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998643
No 261
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.34 E-value=0.0063 Score=62.12 Aligned_cols=28 Identities=29% Similarity=0.447 Sum_probs=25.7
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhC
Q 007952 15 GSVNPGEVLALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 15 ~~i~~Ge~~~i~G~nGaGKSTLl~~l~g 42 (583)
+-+.+|.++.|.||+|+|||||...++.
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 6788999999999999999999999984
No 262
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.32 E-value=0.0018 Score=60.02 Aligned_cols=22 Identities=50% Similarity=0.685 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
.++|+|++|+|||||++.++|.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999984
No 263
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.31 E-value=0.0017 Score=60.45 Aligned_cols=38 Identities=39% Similarity=0.412 Sum_probs=26.9
Q ss_pred eEEEEECCCCCcHHHHHHHHhCCCCC-CCcccEEEECCc
Q 007952 21 EVLALMGPSGSGKTTLLNLLSGRLME-PTVGGSITYNDH 58 (583)
Q Consensus 21 e~~~i~G~nGaGKSTLl~~l~g~~~~-~~~~G~I~~~g~ 58 (583)
.+++|+|+||||||||++.|.+.+.. ...-|.|..+++
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~ 45 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCC
Confidence 57999999999999999999975321 112355555443
No 264
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.22 E-value=0.0021 Score=62.56 Aligned_cols=28 Identities=25% Similarity=0.407 Sum_probs=24.3
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHhCC
Q 007952 16 SVNPGEVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 16 ~i~~Ge~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
.-.+|.+++|+|++||||||+.+.|++.
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4568899999999999999999999974
No 265
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.19 E-value=0.0026 Score=58.94 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=21.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhCC
Q 007952 19 PGEVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 19 ~Ge~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
+|.+++|.|++||||||+.+.|+..
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3678999999999999999999863
No 266
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.18 E-value=0.039 Score=57.41 Aligned_cols=28 Identities=32% Similarity=0.603 Sum_probs=25.1
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhC
Q 007952 15 GSVNPGEVLALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 15 ~~i~~Ge~~~i~G~nGaGKSTLl~~l~g 42 (583)
+=+++|+++.|.||+|+|||||...++.
T Consensus 69 GGl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 69 GGIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 3689999999999999999999987774
No 267
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.11 E-value=0.0028 Score=61.92 Aligned_cols=24 Identities=33% Similarity=0.547 Sum_probs=21.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHhCC
Q 007952 20 GEVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 20 Ge~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
.-+++|.||+||||||+.+.|+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 348999999999999999999963
No 268
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.09 E-value=0.0026 Score=59.15 Aligned_cols=26 Identities=27% Similarity=0.402 Sum_probs=23.1
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCC
Q 007952 18 NPGEVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 18 ~~Ge~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
+++.++.|.|++||||||+.+.|+..
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999853
No 269
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.06 E-value=0.0029 Score=59.57 Aligned_cols=22 Identities=45% Similarity=0.752 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
.+.|+||||||||||++.|...
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 3689999999999999999754
No 270
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.06 E-value=0.011 Score=55.70 Aligned_cols=53 Identities=23% Similarity=0.357 Sum_probs=41.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEec---------CCChHHHhhcCeEEEEc
Q 007952 150 NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIH---------QPSSRLFHKFDKLILLG 207 (583)
Q Consensus 150 ~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H---------~~~~~i~~~~D~v~~L~ 207 (583)
+.+++++||--- +|+. .++.++++++.|+.||++-+ .+..++..++|.|.-|+
T Consensus 81 ~~dvViIDEaqf-l~~~----~v~~l~~l~~~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~ 142 (191)
T 1xx6_A 81 DTEVIAIDEVQF-FDDE----IVEIVNKIAESGRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ 142 (191)
T ss_dssp TCSEEEECSGGG-SCTH----HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred cCCEEEEECCCC-CCHH----HHHHHHHHHhCCCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence 579999999544 6543 36678888878999999998 55577888999987764
No 271
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.96 E-value=0.0037 Score=56.72 Aligned_cols=19 Identities=42% Similarity=0.726 Sum_probs=18.2
Q ss_pred EEEEECCCCCcHHHHHHHH
Q 007952 22 VLALMGPSGSGKTTLLNLL 40 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l 40 (583)
+++|.||+||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 272
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.94 E-value=0.0038 Score=61.55 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=21.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhCCC
Q 007952 21 EVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 21 e~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
++++|+||||||||||-+.|++.+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 368999999999999999999743
No 273
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.89 E-value=0.0043 Score=57.44 Aligned_cols=25 Identities=28% Similarity=0.300 Sum_probs=21.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhCC
Q 007952 19 PGEVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 19 ~Ge~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
.+..+.|+|++||||||+.+.|+..
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999864
No 274
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.89 E-value=0.0045 Score=59.10 Aligned_cols=24 Identities=38% Similarity=0.513 Sum_probs=21.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Q 007952 19 PGEVLALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 19 ~Ge~~~i~G~nGaGKSTLl~~l~g 42 (583)
.+-+++|.|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999986
No 275
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.89 E-value=0.0045 Score=58.16 Aligned_cols=26 Identities=27% Similarity=0.335 Sum_probs=23.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 19 PGEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 19 ~Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
+|.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 68899999999999999999999754
No 276
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.85 E-value=0.0049 Score=58.10 Aligned_cols=26 Identities=35% Similarity=0.569 Sum_probs=23.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 19 PGEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 19 ~Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
+|.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 47789999999999999999999744
No 277
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.84 E-value=0.015 Score=51.87 Aligned_cols=42 Identities=7% Similarity=0.154 Sum_probs=30.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCC
Q 007952 150 NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQP 192 (583)
Q Consensus 150 ~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~ 192 (583)
+..++++||.- .|+...+..+.+.+.+..+.+..+|++++.+
T Consensus 75 ~~~~l~lDei~-~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~~ 116 (143)
T 3co5_A 75 EGGVLYVGDIA-QYSRNIQTGITFIIGKAERCRVRVIASCSYA 116 (143)
T ss_dssp TTSEEEEEECT-TCCHHHHHHHHHHHHHHTTTTCEEEEEEEEC
T ss_pred CCCeEEEeChH-HCCHHHHHHHHHHHHhCCCCCEEEEEecCCC
Confidence 45789999965 6788888888888877543456677777654
No 278
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.84 E-value=0.004 Score=57.54 Aligned_cols=25 Identities=36% Similarity=0.321 Sum_probs=22.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhC
Q 007952 18 NPGEVLALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 18 ~~Ge~~~i~G~nGaGKSTLl~~l~g 42 (583)
.++..+.|.|++||||||+.+.|+.
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHH
Confidence 4577899999999999999999985
No 279
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.84 E-value=0.0044 Score=58.01 Aligned_cols=23 Identities=35% Similarity=0.628 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 58999999999999999999744
No 280
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.80 E-value=0.018 Score=55.17 Aligned_cols=53 Identities=21% Similarity=0.273 Sum_probs=43.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEec---------CCChHHHhhcCeEEEEc
Q 007952 150 NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIH---------QPSSRLFHKFDKLILLG 207 (583)
Q Consensus 150 ~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H---------~~~~~i~~~~D~v~~L~ 207 (583)
+.+++++||--- +|.. .++.++++++.|+.||++-+ .+..++..++|.|.-|+
T Consensus 101 ~~dvViIDEaQF-~~~~----~V~~l~~l~~~~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~ 162 (214)
T 2j9r_A 101 EMDVIAIDEVQF-FDGD----IVEVVQVLANRGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQ 162 (214)
T ss_dssp SCCEEEECCGGG-SCTT----HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCHH----HHHHHHHHhhCCCEEEEEecccccccCccccHHHHHHhcccEEeee
Confidence 589999999876 6543 34777887878999999999 67778889999998875
No 281
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.75 E-value=0.0047 Score=62.17 Aligned_cols=37 Identities=30% Similarity=0.418 Sum_probs=28.9
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECC
Q 007952 17 VNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND 57 (583)
Q Consensus 17 i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g 57 (583)
-..|.++.|.|||||||||+.+.|+.... .|.+.+++
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~~~~----~~~~~Is~ 66 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFEETQ----GNVIVIDN 66 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHHHTT----TCCEEECT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhC----CCeEEEec
Confidence 34578999999999999999999986431 25566665
No 282
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.75 E-value=0.0054 Score=56.17 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=20.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhC
Q 007952 21 EVLALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 21 e~~~i~G~nGaGKSTLl~~l~g 42 (583)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999985
No 283
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.73 E-value=0.0052 Score=58.10 Aligned_cols=26 Identities=31% Similarity=0.415 Sum_probs=23.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCC
Q 007952 18 NPGEVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 18 ~~Ge~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
++|.+++|.|++||||||+.+.|+..
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999863
No 284
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.64 E-value=0.0048 Score=61.31 Aligned_cols=23 Identities=43% Similarity=0.655 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
.++|+|++|||||||++.|+|..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999953
No 285
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.64 E-value=0.0056 Score=56.25 Aligned_cols=22 Identities=36% Similarity=0.528 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
.++|+|++||||||+.+.|+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4889999999999999999964
No 286
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.63 E-value=0.0054 Score=57.09 Aligned_cols=26 Identities=23% Similarity=0.406 Sum_probs=23.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCC
Q 007952 18 NPGEVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 18 ~~Ge~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
.++.+++|.|++||||||+.+.|+..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999853
No 287
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.63 E-value=0.0027 Score=60.18 Aligned_cols=23 Identities=43% Similarity=0.749 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
+++|.|++||||||+++.|+..+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999754
No 288
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.61 E-value=0.057 Score=56.42 Aligned_cols=25 Identities=40% Similarity=0.715 Sum_probs=22.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhCC
Q 007952 19 PGEVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 19 ~Ge~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
++.-+.|.||+|+|||+|.+.|+..
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHh
Confidence 4567899999999999999999874
No 289
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.58 E-value=0.006 Score=57.71 Aligned_cols=27 Identities=26% Similarity=0.348 Sum_probs=23.6
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHhCC
Q 007952 17 VNPGEVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 17 i~~Ge~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
.++|.+++|.|++||||||+.+.|+..
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 356889999999999999999999853
No 290
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.56 E-value=0.065 Score=51.95 Aligned_cols=54 Identities=24% Similarity=0.281 Sum_probs=45.3
Q ss_pred HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecC---------CChHHHhhcCeEEEEc
Q 007952 148 IINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQ---------PSSRLFHKFDKLILLG 207 (583)
Q Consensus 148 ~~~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~---------~~~~i~~~~D~v~~L~ 207 (583)
+.+.+++++||----.| +.+.++.+++.|+.||++-++ +..++..++|.|.-|+
T Consensus 88 ~~~~dvViIDEaQF~~~------v~el~~~l~~~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 88 ALGVAVIGIDEGQFFPD------IVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp HTTCSEEEESSGGGCTT------HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred hccCCEEEEEchhhhhh------HHHHHHHHHhCCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 36789999999887654 666666677789999999999 8888999999998874
No 291
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.56 E-value=0.0097 Score=55.11 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
-++|+|++|+|||||++.+.+.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999876653
No 292
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.52 E-value=0.054 Score=55.11 Aligned_cols=26 Identities=35% Similarity=0.478 Sum_probs=21.5
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHh
Q 007952 15 GSVNPGEVLALMGPSGSGKTTLLNLLS 41 (583)
Q Consensus 15 ~~i~~Ge~~~i~G~nGaGKSTLl~~l~ 41 (583)
+=+++| ++.|.||+|+|||||+--++
T Consensus 24 GGl~~G-iteI~G~pGsGKTtL~Lq~~ 49 (333)
T 3io5_A 24 GGMQSG-LLILAGPSKSFKSNFGLTMV 49 (333)
T ss_dssp CCBCSE-EEEEEESSSSSHHHHHHHHH
T ss_pred CCCcCC-eEEEECCCCCCHHHHHHHHH
Confidence 457889 99999999999999954444
No 293
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.51 E-value=0.0069 Score=56.70 Aligned_cols=23 Identities=35% Similarity=0.570 Sum_probs=21.1
Q ss_pred CeEEEEECCCCCcHHHHHHHHhC
Q 007952 20 GEVLALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 20 Ge~~~i~G~nGaGKSTLl~~l~g 42 (583)
..+++|.|++||||||+.+.|+.
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999996
No 294
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.51 E-value=0.033 Score=69.25 Aligned_cols=72 Identities=7% Similarity=0.003 Sum_probs=46.6
Q ss_pred HHHHHHHHH--hCCCEEEEeCCCCCCC-H------------HHHHHHHHHHHHH---HH-CCcEEEEEecCCCh------
Q 007952 140 RVCIGNEII--INPSLLFLDEPTSGLD-S------------TTALRIVQMLQDI---AE-AGKTVVTTIHQPSS------ 194 (583)
Q Consensus 140 Rv~ia~~L~--~~p~illLDEPtsgLD-~------------~~~~~i~~~l~~l---~~-~g~tii~~~H~~~~------ 194 (583)
-+.+++.++ .+|+++++|.-++=.. + ..+..+.+.|++| ++ .|++||++.|--..
T Consensus 449 il~~~~~lv~~~~~~lIVIDSL~al~~~~e~eg~~Gd~~~~~q~R~is~~Lr~L~~lake~~i~VIlinQl~~~vg~~~g 528 (2050)
T 3cmu_A 449 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFG 528 (2050)
T ss_dssp HHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECTTCCSS
T ss_pred HHHHHHHHHHhcCCcEEEECCHHHhhcccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCeEEEEeecccccccccC
Confidence 345566654 4799999999876542 1 1234566666666 34 48899998874211
Q ss_pred ---------HHHhhcCeEEEEcCCeE
Q 007952 195 ---------RLFHKFDKLILLGKGSL 211 (583)
Q Consensus 195 ---------~i~~~~D~v~~L~~G~i 211 (583)
.+.+.+|-++.|...+.
T Consensus 529 ~p~~psGg~ale~~ADv~l~L~R~~~ 554 (2050)
T 3cmu_A 529 NPETTTGGNALKFYASVRLDIRRIGA 554 (2050)
T ss_dssp CCEECSSHHHHHHHEEEEEEEEEEEE
T ss_pred CCcCCCCcchhhhhCCEEEEEEeccc
Confidence 35667898888876543
No 295
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.51 E-value=0.0078 Score=55.78 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=21.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Q 007952 19 PGEVLALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 19 ~Ge~~~i~G~nGaGKSTLl~~l~g 42 (583)
++.+++|.|++||||||+.+.|+.
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999985
No 296
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.49 E-value=0.0075 Score=55.80 Aligned_cols=24 Identities=33% Similarity=0.398 Sum_probs=21.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhCCC
Q 007952 21 EVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 21 e~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
.+++|+|++|||||||++.|...+
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhh
Confidence 378999999999999999998754
No 297
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.48 E-value=0.0068 Score=56.09 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
+++|.|++||||||+.+.|+..+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998643
No 298
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.38 E-value=0.0083 Score=54.26 Aligned_cols=23 Identities=39% Similarity=0.738 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
-++|+|++|+|||||++.+.+..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 47899999999999999999853
No 299
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=95.37 E-value=0.012 Score=61.32 Aligned_cols=38 Identities=26% Similarity=0.342 Sum_probs=28.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHhCCCC---------CCCcccEEEECC
Q 007952 20 GEVLALMGPSGSGKTTLLNLLSGRLM---------EPTVGGSITYND 57 (583)
Q Consensus 20 Ge~~~i~G~nGaGKSTLl~~l~g~~~---------~~~~~G~I~~~g 57 (583)
|-.++|+|.+|+|||||+|.|+|... ..+..|.+.+++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 34689999999999999999998421 123457777765
No 300
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.35 E-value=0.15 Score=62.64 Aligned_cols=152 Identities=17% Similarity=0.249 Sum_probs=84.7
Q ss_pred eeceE--EEEeCCeEEEEECCCCCcHHHHHHHHhCCCCCCCcccEEEECCccCCccccccEEEEccCCCCCCCCCHHHHH
Q 007952 10 LNGIT--GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETL 87 (583)
Q Consensus 10 L~~vs--~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~~~~~~~G~I~~~g~~~~~~~~~~i~yv~Q~~~~~~~lTv~e~l 87 (583)
|+.+- +=+++|+++.|.||+|+|||||.--++.... ..| ..+.|+.-+...-+ +
T Consensus 371 LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~---~~G--------------~~vlyis~E~s~~~---~---- 426 (1706)
T 3cmw_A 371 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ---REG--------------KTCAFIDAEHALDP---I---- 426 (1706)
T ss_dssp HHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHH---HTT--------------CCEEEECTTSCCCH---H----
T ss_pred HHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHH---HhC--------------CCeEEEEccCchHH---H----
Confidence 44443 3589999999999999999999887774221 111 23455544432211 0
Q ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHH--hCCCEEEEeCCCCCCCH
Q 007952 88 TYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEII--INPSLLFLDEPTSGLDS 165 (583)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~--~~p~illLDEPtsgLD~ 165 (583)
.+ +.+|++. .+-.+- ..-++.| -+.+++.++ .+|+++++|..+.=...
T Consensus 427 -~a----------------------~~lGvd~-~~L~i~----~~~~~e~--~l~~l~~lv~~~~~~lVVIDSL~al~~~ 476 (1706)
T 3cmw_A 427 -YA----------------------RKLGVDI-DNLLCS----QPDTGEQ--ALEICDALARSGAVDVIVVDSVAALTPK 476 (1706)
T ss_dssp -HH----------------------HHTTCCG-GGCEEE----CCSSHHH--HHHHHHHHHHHTCCSEEEESCSTTCCCH
T ss_pred -HH----------------------HHcCCCH-HHeEEc----CCCCHHH--HHHHHHHHHHhcCCCEEEECCHHHhhcc
Confidence 01 1122210 000010 0112332 234455554 57999999999876541
Q ss_pred -------------HHHHHHHHHHHHH---H-HCCcEEEEEecCC---------------ChHHHhhcCeEEEEcCCeEEE
Q 007952 166 -------------TTALRIVQMLQDI---A-EAGKTVVTTIHQP---------------SSRLFHKFDKLILLGKGSLLY 213 (583)
Q Consensus 166 -------------~~~~~i~~~l~~l---~-~~g~tii~~~H~~---------------~~~i~~~~D~v~~L~~G~iv~ 213 (583)
.....+.+.+++| + +.|++||++.|-. ...+...+|-++.+...+...
T Consensus 477 ~e~e~~~g~~~~~~q~r~~s~~Lr~L~~~ak~~~v~VI~inQl~~~vg~~fg~~~~p~gg~ale~~ADv~L~L~R~~~~~ 556 (1706)
T 3cmw_A 477 AEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVK 556 (1706)
T ss_dssp HHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCSSCCEEESSCSHHHHHEEEEEEEEEEEEEE
T ss_pred ccccccccccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEeecccccccccCCCccCCCCcceeeeCCEEEEEEeccccc
Confidence 1233455555555 3 4599999998742 124567889888887654433
Q ss_pred Ec
Q 007952 214 FG 215 (583)
Q Consensus 214 ~G 215 (583)
.|
T Consensus 557 ~g 558 (1706)
T 3cmw_A 557 EG 558 (1706)
T ss_dssp ET
T ss_pred cC
Confidence 33
No 301
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.35 E-value=0.0086 Score=53.78 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
-++++|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999974
No 302
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.34 E-value=0.007 Score=56.05 Aligned_cols=23 Identities=43% Similarity=0.702 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
.++|+|++|+|||||++.+.+..
T Consensus 50 ~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 78999999999999999999843
No 303
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.34 E-value=0.0094 Score=57.00 Aligned_cols=26 Identities=35% Similarity=0.519 Sum_probs=22.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCC
Q 007952 18 NPGEVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 18 ~~Ge~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
++|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 35778999999999999999999863
No 304
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.33 E-value=0.0068 Score=54.37 Aligned_cols=23 Identities=30% Similarity=0.589 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
-++|+|++|+|||||++.+.|..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 37899999999999999999843
No 305
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=95.32 E-value=0.012 Score=59.93 Aligned_cols=36 Identities=31% Similarity=0.327 Sum_probs=31.5
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
...+|+....+ .|.-++|.|+||+|||||...|.++
T Consensus 132 ~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 132 TTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred ceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 45788888887 7899999999999999999999873
No 306
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.30 E-value=0.0069 Score=56.54 Aligned_cols=27 Identities=26% Similarity=0.441 Sum_probs=23.8
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHhCC
Q 007952 17 VNPGEVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 17 i~~Ge~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
.+++.+++|.|++||||||+.+.|+..
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 456789999999999999999999863
No 307
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.30 E-value=0.0074 Score=54.10 Aligned_cols=23 Identities=13% Similarity=0.406 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
-++|+|++|+|||||++.+.+..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999999743
No 308
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.26 E-value=0.0094 Score=53.61 Aligned_cols=21 Identities=43% Similarity=0.684 Sum_probs=19.5
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 007952 23 LALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 23 ~~i~G~nGaGKSTLl~~l~g~ 43 (583)
++|+|++|+|||||++.+.+.
T Consensus 5 i~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 789999999999999999874
No 309
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=95.24 E-value=0.025 Score=61.25 Aligned_cols=26 Identities=31% Similarity=0.608 Sum_probs=22.3
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCC
Q 007952 18 NPGEVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 18 ~~Ge~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
++..-+.|.||+|+|||+|.++|+..
T Consensus 236 ~~~~~vLL~GppGtGKT~lAraia~~ 261 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIARAVANE 261 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEECcCCCCHHHHHHHHHHH
Confidence 44556899999999999999999874
No 310
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.21 E-value=0.009 Score=54.24 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
-++|+|++|+|||||++.+.+..
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999853
No 311
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.20 E-value=0.01 Score=55.26 Aligned_cols=23 Identities=39% Similarity=0.621 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998643
No 312
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.20 E-value=0.0085 Score=53.45 Aligned_cols=22 Identities=23% Similarity=0.418 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
-++++|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
No 313
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.19 E-value=0.0073 Score=55.61 Aligned_cols=26 Identities=35% Similarity=0.514 Sum_probs=18.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 19 PGEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 19 ~Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
++.++.|.|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999998643
No 314
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.19 E-value=0.0086 Score=53.33 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
.++++|++|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999843
No 315
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=95.18 E-value=0.01 Score=59.16 Aligned_cols=22 Identities=50% Similarity=0.872 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
.++|+|++|+|||||++.|+|.
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999984
No 316
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.15 E-value=0.0087 Score=53.42 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
-++++|++|+|||||++.+.+..
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999999743
No 317
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=95.13 E-value=0.0061 Score=63.96 Aligned_cols=45 Identities=11% Similarity=0.117 Sum_probs=37.0
Q ss_pred CCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHHCCcEEEEEecCCCh
Q 007952 150 NPSLLFLDEPTSGLD---STTALRIVQMLQDIAEAGKTVVTTIHQPSS 194 (583)
Q Consensus 150 ~p~illLDEPtsgLD---~~~~~~i~~~l~~l~~~g~tii~~~H~~~~ 194 (583)
.|.++++||-=.=++ +..+..+.+.+++.++.|..++++||.|..
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d 309 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVID 309 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGG
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHH
Confidence 578999999887774 667778888888888889999999998864
No 318
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.13 E-value=0.0084 Score=55.28 Aligned_cols=22 Identities=41% Similarity=0.616 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
.++|+|++|+|||||++.+.+.
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999974
No 319
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.10 E-value=0.0081 Score=53.43 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
.++++|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37899999999999999998743
No 320
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.10 E-value=0.013 Score=53.12 Aligned_cols=26 Identities=35% Similarity=0.475 Sum_probs=22.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 19 PGEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 19 ~Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
+.-.++|+|++|+|||||++.+.+..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 34468999999999999999999843
No 321
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.10 E-value=0.0093 Score=53.52 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
-++++|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999999854
No 322
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=95.09 E-value=0.01 Score=60.25 Aligned_cols=23 Identities=43% Similarity=0.611 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
.++|+|++|+|||||+|.|.|..
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 78999999999999999999953
No 323
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.09 E-value=0.011 Score=56.98 Aligned_cols=26 Identities=27% Similarity=0.323 Sum_probs=21.9
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCC
Q 007952 18 NPGEVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 18 ~~Ge~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
.++.+++|.|++||||||+.+.|+..
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999853
No 324
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.08 E-value=0.0095 Score=53.56 Aligned_cols=22 Identities=27% Similarity=0.372 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
-++++|++|+|||||++.+.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999974
No 325
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.08 E-value=0.013 Score=55.15 Aligned_cols=25 Identities=32% Similarity=0.478 Sum_probs=21.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhCC
Q 007952 19 PGEVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 19 ~Ge~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
.+.+++|.|++||||||+.+.|+..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999863
No 326
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.06 E-value=0.0096 Score=53.35 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
-++++|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998743
No 327
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.05 E-value=0.0095 Score=55.13 Aligned_cols=22 Identities=41% Similarity=0.614 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
.++|+|++|+|||||++.+.+.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
No 328
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.04 E-value=0.0098 Score=53.21 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
-++++|++|+|||||++.+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999874
No 329
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.03 E-value=0.01 Score=53.88 Aligned_cols=22 Identities=32% Similarity=0.567 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
-++|+|++|+|||||++.+.+.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3799999999999999999874
No 330
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.02 E-value=0.01 Score=53.95 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
-++|+|++|+|||||++.+.+..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47999999999999999998743
No 331
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.01 E-value=0.011 Score=54.25 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
-++|+|++|+|||||++.+.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37899999999999999999743
No 332
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.00 E-value=0.009 Score=53.63 Aligned_cols=22 Identities=36% Similarity=0.516 Sum_probs=20.0
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 007952 23 LALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 23 ~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
++|+|++|+|||||++.+.+..
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEECcCCCCHHHHHHHHHhCC
Confidence 7899999999999999999743
No 333
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.00 E-value=0.012 Score=55.15 Aligned_cols=23 Identities=30% Similarity=0.619 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
+++|.|++||||||+.+.|+.++
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999999743
No 334
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=94.98 E-value=0.01 Score=54.66 Aligned_cols=23 Identities=43% Similarity=0.592 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
.++|+|++|+|||||++.+.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 58999999999999999999853
No 335
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.94 E-value=0.021 Score=52.86 Aligned_cols=36 Identities=17% Similarity=0.094 Sum_probs=28.7
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhC
Q 007952 6 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 6 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g 42 (583)
.+..++..-..+ .|.-++|.|+||+|||||...|..
T Consensus 3 ~~~~lHas~v~v-~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 3 AKQTWHANFLVI-DKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp -CEEEESEEEEE-TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred ccEEEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 456677766555 488999999999999999988875
No 336
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.93 E-value=0.013 Score=55.60 Aligned_cols=21 Identities=33% Similarity=0.466 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 007952 22 VLALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g 42 (583)
.++|.||+||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999975
No 337
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=94.91 E-value=0.011 Score=54.27 Aligned_cols=22 Identities=36% Similarity=0.611 Sum_probs=20.0
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 007952 23 LALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 23 ~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
++|+|++|+|||||++.+.+..
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhCcC
Confidence 6899999999999999999853
No 338
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.91 E-value=0.014 Score=54.79 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=21.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhCC
Q 007952 19 PGEVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 19 ~Ge~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
...+++|.|++||||||+.+.|+..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999999853
No 339
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.91 E-value=0.014 Score=54.08 Aligned_cols=22 Identities=41% Similarity=0.463 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
+++|.|++||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999863
No 340
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.89 E-value=0.015 Score=52.92 Aligned_cols=24 Identities=38% Similarity=0.416 Sum_probs=21.1
Q ss_pred CeEEEEECCCCCcHHHHHHHHhCC
Q 007952 20 GEVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 20 Ge~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
=++++|.|+.||||||+.+.|+..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999863
No 341
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.89 E-value=0.011 Score=56.59 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=21.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhCC
Q 007952 19 PGEVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 19 ~Ge~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
.+..+.|+|++||||||+.+.|+..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4567899999999999999999863
No 342
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=94.87 E-value=0.01 Score=53.84 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
-++|+|++|+|||||++.+.+.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999975
No 343
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=94.87 E-value=0.013 Score=53.06 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
-++|+|++|+|||||++.+.+.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 3789999999999999999974
No 344
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=94.85 E-value=0.012 Score=52.73 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
-++|+|++|+|||||++.+.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999964
No 345
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.84 E-value=0.013 Score=53.37 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=20.4
Q ss_pred eEEEEECCCCCcHHHHHHHHhCC
Q 007952 21 EVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 21 e~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
.+++|.|++||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999863
No 346
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.83 E-value=0.016 Score=57.17 Aligned_cols=25 Identities=28% Similarity=0.313 Sum_probs=22.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhCC
Q 007952 19 PGEVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 19 ~Ge~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
++.++.|.|++||||||+.+.|+..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999864
No 347
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=94.82 E-value=0.012 Score=54.33 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
-++|+|++|+|||||++.+.+..
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999999853
No 348
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=94.80 E-value=0.012 Score=52.83 Aligned_cols=22 Identities=36% Similarity=0.540 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
.++++|++|+|||||++.+.+.
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 349
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.78 E-value=0.0086 Score=54.72 Aligned_cols=24 Identities=33% Similarity=0.434 Sum_probs=20.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Q 007952 19 PGEVLALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 19 ~Ge~~~i~G~nGaGKSTLl~~l~g 42 (583)
+.-.++|+|++|+|||||++.+.+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 344689999999999999999885
No 350
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=94.78 E-value=0.013 Score=54.35 Aligned_cols=23 Identities=39% Similarity=0.582 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999999743
No 351
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.77 E-value=0.015 Score=55.16 Aligned_cols=22 Identities=36% Similarity=0.459 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
.++|.||+||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999853
No 352
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=94.76 E-value=0.015 Score=58.79 Aligned_cols=26 Identities=42% Similarity=0.604 Sum_probs=22.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 18 NPGEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 18 ~~Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
+.| .++|+|++|+|||||+|.|.|..
T Consensus 6 ~~g-~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 6 YSG-FVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEE-EEEEECSTTSSHHHHHHHHHTSC
T ss_pred cCC-EEEEECCCCCCHHHHHHHHhCCc
Confidence 445 59999999999999999999853
No 353
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=94.75 E-value=0.013 Score=53.84 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
-++|+|++|+|||||++.+.+.
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999974
No 354
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=94.75 E-value=0.013 Score=52.35 Aligned_cols=21 Identities=33% Similarity=0.464 Sum_probs=19.2
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 007952 23 LALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 23 ~~i~G~nGaGKSTLl~~l~g~ 43 (583)
++++|++|+|||||++.+.+.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999999863
No 355
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.75 E-value=0.017 Score=52.35 Aligned_cols=22 Identities=41% Similarity=0.422 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
.++|.|++||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999863
No 356
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=94.72 E-value=0.012 Score=58.40 Aligned_cols=22 Identities=45% Similarity=0.582 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
-++|+|++|+|||||+|.|.|.
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3789999999999999999874
No 357
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.72 E-value=0.017 Score=56.32 Aligned_cols=25 Identities=32% Similarity=0.405 Sum_probs=22.4
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhC
Q 007952 18 NPGEVLALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 18 ~~Ge~~~i~G~nGaGKSTLl~~l~g 42 (583)
+++-.++|.||+||||||+.+.|+.
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999985
No 358
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.71 E-value=0.016 Score=53.52 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=20.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHhC
Q 007952 20 GEVLALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 20 Ge~~~i~G~nGaGKSTLl~~l~g 42 (583)
..+++|.|++||||||+.+.|+.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999985
No 359
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.70 E-value=0.014 Score=53.99 Aligned_cols=23 Identities=35% Similarity=0.429 Sum_probs=20.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhCC
Q 007952 21 EVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 21 e~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
.+++|+|++||||||+-+.|+.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999863
No 360
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.67 E-value=0.028 Score=53.33 Aligned_cols=36 Identities=25% Similarity=0.342 Sum_probs=29.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCC
Q 007952 7 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 7 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
...++..-..+ .|..++|+||+|+|||||...|+.+
T Consensus 22 ~~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 22 RRSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp CCCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred ceeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 34566655554 5889999999999999999999964
No 361
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.64 E-value=0.014 Score=52.98 Aligned_cols=23 Identities=39% Similarity=0.495 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
-++|+|++|+|||||++.+.+..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47899999999999999998743
No 362
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.63 E-value=0.25 Score=52.49 Aligned_cols=26 Identities=35% Similarity=0.491 Sum_probs=23.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 19 PGEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 19 ~Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
++.+++++|++|+||||+...|+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence 46799999999999999999999644
No 363
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=94.61 E-value=0.015 Score=57.42 Aligned_cols=22 Identities=41% Similarity=0.567 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
.++|+|++|||||||+|.|+|.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4799999999999999999985
No 364
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=94.61 E-value=0.015 Score=53.11 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
-++|+|++|+|||||++.+.+..
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 48999999999999999999743
No 365
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=94.60 E-value=0.013 Score=53.05 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
-++|+|++|+|||||++.+.+.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999864
No 366
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=94.60 E-value=0.015 Score=52.67 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
-++|+|++|+|||||++.+.+..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48899999999999999999743
No 367
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=94.60 E-value=0.017 Score=53.02 Aligned_cols=26 Identities=31% Similarity=0.442 Sum_probs=22.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 19 PGEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 19 ~Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
+.=-++++|++|+|||||++.+.+..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 44568999999999999999999743
No 368
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=94.59 E-value=0.013 Score=54.77 Aligned_cols=22 Identities=41% Similarity=0.628 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
.++|+|++|+|||||++.+.|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5799999999999999999863
No 369
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=94.59 E-value=0.015 Score=53.64 Aligned_cols=23 Identities=35% Similarity=0.509 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
-++|+|++|+|||||++.+.|..
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 47899999999999999999854
No 370
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=94.56 E-value=0.015 Score=53.56 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
.++++|++|+|||||++.+.+..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 57899999999999999999753
No 371
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=94.56 E-value=0.016 Score=52.79 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
-++|+|++|+|||||++.+.+..
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999999743
No 372
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.55 E-value=0.028 Score=57.72 Aligned_cols=26 Identities=35% Similarity=0.576 Sum_probs=23.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 19 PGEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 19 ~Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
++.+++|+||+|||||||-..|+.++
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 56799999999999999999999754
No 373
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=94.46 E-value=0.017 Score=56.61 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
.++|+|++|||||||++.|.|..
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999843
No 374
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.46 E-value=0.016 Score=54.79 Aligned_cols=23 Identities=43% Similarity=0.702 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
.++|+|++|+|||||++.+.+..
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999999853
No 375
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=94.44 E-value=0.015 Score=60.54 Aligned_cols=21 Identities=33% Similarity=0.589 Sum_probs=19.6
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 007952 23 LALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 23 ~~i~G~nGaGKSTLl~~l~g~ 43 (583)
++|+|++|+|||||++.|++.
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 689999999999999999974
No 376
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=94.43 E-value=0.017 Score=53.87 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
-++|+|++|+|||||++.+.+..
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999998743
No 377
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=94.42 E-value=0.017 Score=53.93 Aligned_cols=23 Identities=35% Similarity=0.601 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999999753
No 378
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=94.42 E-value=0.017 Score=53.31 Aligned_cols=23 Identities=35% Similarity=0.410 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
-++|+|++|+|||||++.+.+..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999999753
No 379
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=94.41 E-value=0.018 Score=52.62 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
-++|+|++|+|||||++.+.+.
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999975
No 380
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=94.41 E-value=0.021 Score=53.32 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37999999999999999999853
No 381
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=94.40 E-value=0.021 Score=51.96 Aligned_cols=22 Identities=27% Similarity=0.306 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
-++|+|++|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999999874
No 382
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=94.40 E-value=0.015 Score=53.16 Aligned_cols=23 Identities=26% Similarity=0.533 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
-++|+|++|+|||||++.+.+..
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998743
No 383
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=94.39 E-value=0.02 Score=56.47 Aligned_cols=22 Identities=45% Similarity=0.658 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
.++|+|++|+|||||++.|+|.
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4899999999999999999984
No 384
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=94.38 E-value=0.019 Score=53.33 Aligned_cols=22 Identities=27% Similarity=0.604 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
-++|+|++|+|||||++.+.+.
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999999974
No 385
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=94.37 E-value=0.018 Score=53.23 Aligned_cols=23 Identities=39% Similarity=0.530 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
-++|+|++|+|||||++.+.+..
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999999743
No 386
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=94.36 E-value=0.023 Score=57.25 Aligned_cols=23 Identities=30% Similarity=0.583 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
.++|+|+.|||||||++.|.|..
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999964
No 387
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.34 E-value=0.023 Score=53.61 Aligned_cols=23 Identities=30% Similarity=0.567 Sum_probs=21.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHhC
Q 007952 20 GEVLALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 20 Ge~~~i~G~nGaGKSTLl~~l~g 42 (583)
..+++|.|++||||||+.+.|+.
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999985
No 388
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.33 E-value=0.019 Score=55.78 Aligned_cols=29 Identities=38% Similarity=0.620 Sum_probs=21.5
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 16 SVNPGEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 16 ~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
+..+|.++.+.|++||||||+.+.|+..+
T Consensus 21 ~m~~g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 21 SMARGKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp --CCCCEEEEECCC---CHHHHHHHHHHH
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999999998644
No 389
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.30 E-value=0.017 Score=53.55 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
-++|+|++|+|||||++.+.+.
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 5899999999999999999874
No 390
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=94.29 E-value=0.021 Score=53.13 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
-++|+|++|+|||||++.+.+..
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 48899999999999999999854
No 391
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=94.28 E-value=0.017 Score=53.16 Aligned_cols=22 Identities=32% Similarity=0.567 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
-++|+|++|+|||||++.+.+.
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999974
No 392
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=94.28 E-value=0.019 Score=52.35 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
-++++|++|+|||||++.+.+.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999863
No 393
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=94.28 E-value=0.02 Score=57.06 Aligned_cols=22 Identities=50% Similarity=0.809 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
.++|+|++|||||||+|.|+|.
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999984
No 394
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.28 E-value=0.026 Score=51.39 Aligned_cols=26 Identities=31% Similarity=0.510 Sum_probs=22.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 19 PGEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 19 ~Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
.+..+.|.||+|+|||||++.++...
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 45678999999999999999998643
No 395
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=94.27 E-value=0.017 Score=53.57 Aligned_cols=23 Identities=22% Similarity=0.459 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998743
No 396
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.27 E-value=0.024 Score=54.46 Aligned_cols=21 Identities=43% Similarity=0.678 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 007952 22 VLALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g 42 (583)
.++|.|++||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999985
No 397
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=94.24 E-value=0.019 Score=53.48 Aligned_cols=21 Identities=43% Similarity=0.812 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 007952 22 VLALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g 42 (583)
-++|+|++|+|||||++.+.|
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999986
No 398
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=94.24 E-value=0.02 Score=52.83 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
-++|+|++|+|||||++.+.+.
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999864
No 399
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.24 E-value=0.027 Score=53.99 Aligned_cols=27 Identities=41% Similarity=0.644 Sum_probs=23.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 18 NPGEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 18 ~~Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
.+|.++++.|++||||||+.+.|...+
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l 30 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERL 30 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999998644
No 400
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=94.23 E-value=0.022 Score=54.57 Aligned_cols=23 Identities=26% Similarity=0.567 Sum_probs=20.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhCC
Q 007952 21 EVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 21 e~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
-.++|+|++|+|||||++.+.+.
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999984
No 401
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=94.22 E-value=0.012 Score=55.94 Aligned_cols=23 Identities=35% Similarity=0.564 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
.++|+|++|+|||||++.|.|..
T Consensus 31 ~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 31 EIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCS
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999853
No 402
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.21 E-value=0.023 Score=54.21 Aligned_cols=25 Identities=32% Similarity=0.474 Sum_probs=21.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhCC
Q 007952 19 PGEVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 19 ~Ge~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
+|..++|+|++||||||+.+.|+..
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 3567899999999999999999863
No 403
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=94.19 E-value=0.022 Score=52.64 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
.++|+|++|+|||||++.+.+..
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999843
No 404
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.19 E-value=0.022 Score=52.44 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=20.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhCC
Q 007952 21 EVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 21 e~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
=.++|+|++|+|||||++.+.+.
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999963
No 405
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=94.19 E-value=0.022 Score=53.36 Aligned_cols=22 Identities=27% Similarity=0.572 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
-++|+|++|+|||||++.+.+.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4799999999999999999974
No 406
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=94.17 E-value=0.017 Score=53.33 Aligned_cols=23 Identities=35% Similarity=0.417 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
-++|+|++|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999843
No 407
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=94.15 E-value=0.026 Score=56.25 Aligned_cols=23 Identities=30% Similarity=0.560 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
.++|+|.+|+|||||++.|.|..
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999964
No 408
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=94.15 E-value=0.021 Score=52.81 Aligned_cols=23 Identities=26% Similarity=0.495 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
-++|+|++|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999999743
No 409
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=94.13 E-value=0.0072 Score=57.40 Aligned_cols=42 Identities=12% Similarity=0.195 Sum_probs=29.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCC
Q 007952 150 NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPS 193 (583)
Q Consensus 150 ~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~ 193 (583)
+|.++++||.-. +|......+.+.+.+. ..+..+|++++++.
T Consensus 126 ~~~vlviDe~~~-l~~~~~~~l~~~l~~~-~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 126 RFKVYLIDEVHM-LSRHSFNALLKTLEEP-PEHVKFLLATTDPQ 167 (250)
T ss_dssp SSEEEEEETGGG-SCHHHHHHHHHHHHSC-CTTEEEEEEESCGG
T ss_pred CceEEEEECccc-ccHHHHHHHHHHHhcC-CCceEEEEEeCChH
Confidence 578999999766 7877777766666432 13567888888754
No 410
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=94.12 E-value=0.026 Score=53.27 Aligned_cols=23 Identities=39% Similarity=0.485 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999999843
No 411
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=94.11 E-value=0.019 Score=53.68 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
-++|+|++|+|||||++.+.+..
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 58999999999999999999853
No 412
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=94.08 E-value=0.02 Score=52.43 Aligned_cols=22 Identities=32% Similarity=0.449 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
-++|+|++|+|||||++.+.+.
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999984
No 413
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=94.08 E-value=0.024 Score=56.79 Aligned_cols=24 Identities=38% Similarity=0.681 Sum_probs=21.9
Q ss_pred eEEEEECCCCCcHHHHHHHHhCCC
Q 007952 21 EVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 21 e~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
..+.|.||+|+|||||.++|++..
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHHH
Confidence 689999999999999999999854
No 414
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=94.07 E-value=0.022 Score=52.57 Aligned_cols=22 Identities=41% Similarity=0.584 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
-++|+|++|+|||||++.+.+.
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999974
No 415
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.05 E-value=0.014 Score=58.76 Aligned_cols=24 Identities=21% Similarity=0.479 Sum_probs=18.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Q 007952 19 PGEVLALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 19 ~Ge~~~i~G~nGaGKSTLl~~l~g 42 (583)
++-+++|-||+||||||+.+.|+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999986
No 416
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.05 E-value=0.029 Score=53.96 Aligned_cols=28 Identities=29% Similarity=0.442 Sum_probs=23.5
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHhCC
Q 007952 16 SVNPGEVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 16 ~i~~Ge~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
..++..++.|+||+||||+|..+.|+-.
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3455668899999999999999999963
No 417
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.05 E-value=0.023 Score=52.81 Aligned_cols=22 Identities=32% Similarity=0.551 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
-++|+|++|+|||||++.+.+.
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999974
No 418
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=94.04 E-value=0.023 Score=52.35 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
-++|+|++|+|||||++.+.+..
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999999753
No 419
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.04 E-value=0.02 Score=52.97 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 48999999999999999999743
No 420
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.04 E-value=0.022 Score=54.08 Aligned_cols=23 Identities=39% Similarity=0.551 Sum_probs=20.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhCC
Q 007952 21 EVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 21 e~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
-.++|+|++|+|||||++.|++.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 47899999999999999999874
No 421
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=94.02 E-value=0.023 Score=52.64 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999999753
No 422
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.00 E-value=0.025 Score=56.57 Aligned_cols=22 Identities=45% Similarity=0.534 Sum_probs=20.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHh
Q 007952 20 GEVLALMGPSGSGKTTLLNLLS 41 (583)
Q Consensus 20 Ge~~~i~G~nGaGKSTLl~~l~ 41 (583)
..+++|.|++||||||+.+.|+
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 3479999999999999999998
No 423
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.00 E-value=0.023 Score=53.27 Aligned_cols=23 Identities=35% Similarity=0.471 Sum_probs=20.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhCC
Q 007952 21 EVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 21 e~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
=-++|+|++|+|||||++.+.+.
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999974
No 424
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=93.99 E-value=0.023 Score=52.94 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=21.1
Q ss_pred eEEEEECCCCCcHHHHHHHHhCCC
Q 007952 21 EVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 21 e~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
=-++|+|++|+|||||++.+.+..
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 358999999999999999999743
No 425
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=93.99 E-value=0.021 Score=53.52 Aligned_cols=23 Identities=43% Similarity=0.543 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999743
No 426
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=93.96 E-value=0.029 Score=52.20 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=20.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHhCC
Q 007952 20 GEVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 20 Ge~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
.=-++|+|++|+|||||++.+.+.
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 345899999999999999999974
No 427
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=93.93 E-value=0.025 Score=51.47 Aligned_cols=21 Identities=24% Similarity=0.368 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 007952 22 VLALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g 42 (583)
-++|+|++|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 478999999999999999985
No 428
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=93.93 E-value=0.03 Score=56.03 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=20.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhC
Q 007952 21 EVLALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 21 e~~~i~G~nGaGKSTLl~~l~g 42 (583)
.++.|+|++||||||+.+.|+.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999985
No 429
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.93 E-value=0.033 Score=54.49 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=21.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhCCC
Q 007952 21 EVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 21 e~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
-+++|.|++||||||+.+.|+..+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998643
No 430
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.92 E-value=0.022 Score=53.73 Aligned_cols=22 Identities=32% Similarity=0.566 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
-++|+|++|+|||||++.+.+.
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4799999999999999998864
No 431
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=93.91 E-value=0.033 Score=53.74 Aligned_cols=26 Identities=35% Similarity=0.500 Sum_probs=22.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCC
Q 007952 18 NPGEVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 18 ~~Ge~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
..+..+.|+|++||||||+.+.|+..
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34568999999999999999999863
No 432
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=93.86 E-value=0.02 Score=52.04 Aligned_cols=22 Identities=27% Similarity=0.481 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
-++++|++|+|||||++.+.+.
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999874
No 433
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.86 E-value=0.028 Score=53.39 Aligned_cols=21 Identities=24% Similarity=0.376 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 007952 22 VLALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g 42 (583)
.++|.|++||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 368999999999999999985
No 434
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=93.85 E-value=0.028 Score=53.27 Aligned_cols=22 Identities=36% Similarity=0.643 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
-++|+|++|+|||||++.+.+.
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4889999999999999999974
No 435
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.82 E-value=0.031 Score=54.53 Aligned_cols=26 Identities=23% Similarity=0.495 Sum_probs=23.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 19 PGEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 19 ~Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
+|.++++.|++||||||+.+.|...+
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999998654
No 436
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=93.80 E-value=0.027 Score=52.05 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
-++|+|++|+|||||++.+.+.
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 4899999999999999998864
No 437
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.79 E-value=0.024 Score=53.29 Aligned_cols=24 Identities=33% Similarity=0.455 Sum_probs=21.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhCCC
Q 007952 21 EVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 21 e~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
--++|+|++|+|||||++.+.+..
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSS
T ss_pred cEEEEECcCCCCHHHHHHHHhcCC
Confidence 368999999999999999999743
No 438
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=93.77 E-value=0.019 Score=52.39 Aligned_cols=22 Identities=45% Similarity=0.557 Sum_probs=9.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
-++|+|++|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999864
No 439
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=93.76 E-value=0.027 Score=52.42 Aligned_cols=23 Identities=30% Similarity=0.367 Sum_probs=20.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhCC
Q 007952 21 EVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 21 e~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
=-++|+|++|+|||||++.+.+.
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHHCSS
T ss_pred cEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999863
No 440
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.72 E-value=0.032 Score=59.05 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=22.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhC
Q 007952 18 NPGEVLALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 18 ~~Ge~~~i~G~nGaGKSTLl~~l~g 42 (583)
.+.+++.|+|++||||||+.+.|+.
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999999986
No 441
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=93.72 E-value=0.038 Score=56.14 Aligned_cols=25 Identities=36% Similarity=0.644 Sum_probs=22.1
Q ss_pred CeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 20 GEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 20 Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
+.+++|+||+|||||||...|+...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4689999999999999999999643
No 442
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.70 E-value=0.039 Score=59.08 Aligned_cols=34 Identities=26% Similarity=0.439 Sum_probs=27.9
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhCC
Q 007952 9 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 9 iL~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
+++.+ ..+-+|+..+|+|+||+|||||++.|++.
T Consensus 141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~ 174 (473)
T 1sky_E 141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHN 174 (473)
T ss_dssp HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHH
T ss_pred HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhh
Confidence 34444 45668999999999999999999999863
No 443
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=93.68 E-value=0.028 Score=52.88 Aligned_cols=22 Identities=32% Similarity=0.356 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
.++|+|++|+|||||++.+.+.
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999874
No 444
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=93.65 E-value=0.026 Score=53.33 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
-++|+|++|+|||||++.+.+..
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999853
No 445
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=93.65 E-value=0.031 Score=55.11 Aligned_cols=23 Identities=30% Similarity=0.577 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
.++|+|++|+|||||++.|.|..
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999854
No 446
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=93.63 E-value=0.046 Score=52.63 Aligned_cols=60 Identities=22% Similarity=0.184 Sum_probs=39.4
Q ss_pred HhCCCEEEEeCCCC----CCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCCh---------HHHhhcCeEEEEc
Q 007952 148 IINPSLLFLDEPTS----GLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSS---------RLFHKFDKLILLG 207 (583)
Q Consensus 148 ~~~p~illLDEPts----gLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~---------~i~~~~D~v~~L~ 207 (583)
-.+|+++++|--+. .-|.....+++..|++++++ |.+++++.|.... .+...+|-|+.|.
T Consensus 133 ~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~~~~~~~~~~~~~~~~~aD~vi~l~ 206 (251)
T 2zts_A 133 AINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred hcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEecccccccccCCceeEEeeEEEEEE
Confidence 35788899886432 12455567778888887765 9999999885321 1234577777774
No 447
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=93.61 E-value=0.036 Score=53.10 Aligned_cols=26 Identities=31% Similarity=0.466 Sum_probs=23.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 19 PGEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 19 ~Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
+|.++.+.|++||||||+.+.|...+
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 48899999999999999999998754
No 448
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=93.61 E-value=0.036 Score=53.32 Aligned_cols=27 Identities=33% Similarity=0.529 Sum_probs=24.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 18 NPGEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 18 ~~Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
++|.++.+.|++||||||+.+.|...+
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l 29 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKL 29 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999999755
No 449
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=93.61 E-value=0.036 Score=52.86 Aligned_cols=22 Identities=41% Similarity=0.745 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
.++|+|++|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999973
No 450
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=93.61 E-value=0.032 Score=50.77 Aligned_cols=26 Identities=27% Similarity=0.429 Sum_probs=22.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 19 PGEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 19 ~Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
.+..+.|.||+|+|||||++.++...
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 35577899999999999999998643
No 451
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=93.60 E-value=0.031 Score=55.28 Aligned_cols=23 Identities=30% Similarity=0.588 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
.++++|++|+|||||++.|.|..
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999854
No 452
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=93.58 E-value=0.042 Score=53.08 Aligned_cols=27 Identities=37% Similarity=0.439 Sum_probs=24.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 18 NPGEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 18 ~~Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
.+|.++++.|++||||||+.+.|+..+
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l 45 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYL 45 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 368899999999999999999998644
No 453
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.56 E-value=0.036 Score=56.95 Aligned_cols=24 Identities=29% Similarity=0.537 Sum_probs=21.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhCCC
Q 007952 21 EVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 21 e~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
.+++|.||+|||||||.+.|+..+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 479999999999999999999744
No 454
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=93.49 E-value=0.029 Score=52.49 Aligned_cols=23 Identities=35% Similarity=0.489 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999999743
No 455
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.38 E-value=0.043 Score=53.19 Aligned_cols=26 Identities=27% Similarity=0.400 Sum_probs=23.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 19 PGEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 19 ~Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
+|.+++|-|+.||||||+.+.|+..+
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 36789999999999999999999754
No 456
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=93.37 E-value=0.019 Score=54.34 Aligned_cols=22 Identities=36% Similarity=0.576 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
-++|+|++|+|||||++.+.+.
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999864
No 457
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=93.34 E-value=0.038 Score=54.72 Aligned_cols=24 Identities=29% Similarity=0.589 Sum_probs=21.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhCCC
Q 007952 21 EVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 21 e~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
..++++|.+|+|||||+|.|.|..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~ 123 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKR 123 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTC
T ss_pred hheEEeCCCCCCHHHHHHHHhccc
Confidence 478999999999999999999854
No 458
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.30 E-value=0.033 Score=51.49 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
-++++|++|+|||||++.+.+.
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999974
No 459
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=93.28 E-value=0.046 Score=52.11 Aligned_cols=22 Identities=36% Similarity=0.693 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
++.|+||+||||+|.-+.|+..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5679999999999999999963
No 460
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.24 E-value=0.031 Score=55.05 Aligned_cols=27 Identities=22% Similarity=0.352 Sum_probs=23.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 18 NPGEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 18 ~~Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
+++.+++|.|+.||||||+.+.|+..+
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 578899999999999999999998754
No 461
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.24 E-value=0.014 Score=59.66 Aligned_cols=42 Identities=7% Similarity=0.135 Sum_probs=31.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCC
Q 007952 150 NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPS 193 (583)
Q Consensus 150 ~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~ 193 (583)
+++++++|| ...+++..+..+.+.+.+... ...+|++++++.
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~-~~~~il~~~~~~ 174 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSG-VTRFCLICNYVT 174 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTT-TEEEEEEESCGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCC-CceEEEEeCchh
Confidence 567999999 788999888888888776543 345666776654
No 462
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=93.24 E-value=0.047 Score=55.75 Aligned_cols=24 Identities=42% Similarity=0.639 Sum_probs=21.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhCCC
Q 007952 21 EVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 21 e~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
.+++|+||+|||||||-+.|+..+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999999743
No 463
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=93.22 E-value=0.042 Score=52.16 Aligned_cols=25 Identities=32% Similarity=0.539 Sum_probs=21.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 20 GEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 20 Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
+.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4578999999999999999999743
No 464
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=93.21 E-value=0.027 Score=51.88 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=20.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHhC
Q 007952 20 GEVLALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 20 Ge~~~i~G~nGaGKSTLl~~l~g 42 (583)
.=-++++|++|+|||||++.+.+
T Consensus 22 ~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 22 KIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 34589999999999999999976
No 465
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=93.11 E-value=0.02 Score=53.36 Aligned_cols=22 Identities=23% Similarity=0.607 Sum_probs=4.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
-++|+|++|+|||||++.+.+.
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999874
No 466
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=93.10 E-value=0.041 Score=52.39 Aligned_cols=23 Identities=35% Similarity=0.577 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
-++|+|++|+|||||++.+.+..
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999999743
No 467
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=93.01 E-value=0.038 Score=51.73 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
-++|+|++|+|||||++.+.+.
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 4899999999999999999874
No 468
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.97 E-value=0.047 Score=51.85 Aligned_cols=23 Identities=39% Similarity=0.570 Sum_probs=20.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhCC
Q 007952 21 EVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 21 e~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
-.++|+|++|+|||||++.+++.
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 46899999999999999999863
No 469
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=92.97 E-value=0.039 Score=51.78 Aligned_cols=23 Identities=26% Similarity=0.277 Sum_probs=20.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhCC
Q 007952 21 EVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 21 e~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
=-++++|++|+|||||++.+.+.
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 36899999999999999999863
No 470
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=92.95 E-value=0.04 Score=59.03 Aligned_cols=52 Identities=10% Similarity=0.101 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHHCCcEEEEEecC
Q 007952 136 GERKRVCIGNEIIINPSLLFLDEPT-SGLDSTTALRIVQMLQDIAEAGKTVVTTIHQ 191 (583)
Q Consensus 136 GerqRv~ia~~L~~~p~illLDEPt-sgLD~~~~~~i~~~l~~l~~~g~tii~~~H~ 191 (583)
.+++....+...+.+++++++.... .++... ...+.+.++ +.++.+|++.+.
T Consensus 88 ~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~-d~~l~~~l~---~~~~pvilV~NK 140 (456)
T 4dcu_A 88 FLAQIRQQAEIAMDEADVIIFMVNGREGVTAA-DEEVAKILY---RTKKPVVLAVNK 140 (456)
T ss_dssp CHHHHHHHHHHHHHHCSEEEEEEESSSCSCHH-HHHHHHHHT---TCCSCEEEEEEC
T ss_pred HHHHHHHHHHhhHhhCCEEEEEEeCCCCCChH-HHHHHHHHH---HcCCCEEEEEEC
Confidence 3666667777778888877665544 455544 345555554 357777777765
No 471
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=92.90 E-value=0.22 Score=56.84 Aligned_cols=22 Identities=36% Similarity=0.674 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
.+.+.||+|+|||+|.++|+..
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~ 544 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAES 544 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999974
No 472
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=92.89 E-value=0.061 Score=54.52 Aligned_cols=24 Identities=42% Similarity=0.519 Sum_probs=21.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHhCC
Q 007952 20 GEVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 20 Ge~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
..+++|+||+|||||||...|+..
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHHh
Confidence 458999999999999999999964
No 473
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.82 E-value=0.19 Score=62.62 Aligned_cols=35 Identities=31% Similarity=0.422 Sum_probs=30.9
Q ss_pred ceeeceE--EEEeCCeEEEEECCCCCcHHHHHHHHhC
Q 007952 8 DILNGIT--GSVNPGEVLALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 8 ~iL~~vs--~~i~~Ge~~~i~G~nGaGKSTLl~~l~g 42 (583)
..|+++. +-+++|+.+.|.||+|+|||||...+.-
T Consensus 1067 ~~Ld~~lg~ggi~~g~~vll~G~~GtGKT~la~~~~~ 1103 (2050)
T 3cmu_A 1067 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 1103 (2050)
T ss_dssp HHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHhccCCcCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4577887 5899999999999999999999998873
No 474
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=92.75 E-value=0.048 Score=51.69 Aligned_cols=22 Identities=36% Similarity=0.575 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
-++|+|++|+|||||++.+.+.
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5889999999999999999874
No 475
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=92.65 E-value=0.049 Score=56.19 Aligned_cols=23 Identities=30% Similarity=0.560 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
.++|+|.+|+|||||++.|.|..
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999954
No 476
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=92.55 E-value=0.047 Score=51.24 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
-++|+|++|+|||||++.+.+.
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999864
No 477
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=92.50 E-value=0.02 Score=56.28 Aligned_cols=27 Identities=37% Similarity=0.753 Sum_probs=22.1
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhCC
Q 007952 15 GSVNPGEVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 15 ~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
...+.| +.|.||+|+|||||.++|++.
T Consensus 41 ~~~~~~--vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 41 AKIPKG--VLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CCCCSC--CCCBCSSCSSHHHHHHHHHHH
T ss_pred CCCCce--EEEECCCCCcHHHHHHHHHHH
Confidence 344445 779999999999999999974
No 478
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=92.47 E-value=0.068 Score=49.82 Aligned_cols=53 Identities=17% Similarity=0.270 Sum_probs=37.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCC---------hHHHhhcCeEEEEc
Q 007952 150 NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPS---------SRLFHKFDKLILLG 207 (583)
Q Consensus 150 ~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~---------~~i~~~~D~v~~L~ 207 (583)
+++++++||--. +|+ ++++.|++++++|..|+++-++.+ ..+...+|.|.-|+
T Consensus 76 ~~dvviIDE~Q~-~~~----~~~~~l~~l~~~~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~ 137 (184)
T 2orw_A 76 DTRGVFIDEVQF-FNP----SLFEVVKDLLDRGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKK 137 (184)
T ss_dssp TEEEEEECCGGG-SCT----THHHHHHHHHHTTCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCH----HHHHHHHHHHHCCCCEEEEeeccccccCCccchHHHHHHhhheEEee
Confidence 578999999754 443 366778888888999999888433 34455677775553
No 479
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=92.43 E-value=0.065 Score=56.28 Aligned_cols=24 Identities=29% Similarity=0.527 Sum_probs=21.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHhCC
Q 007952 20 GEVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 20 Ge~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
-.+++|+||+|||||||.+.|+..
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~ 25 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQK 25 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHHHH
Confidence 357899999999999999999964
No 480
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=92.24 E-value=0.075 Score=53.13 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=21.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhCCC
Q 007952 21 EVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 21 e~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
-.++++|.+|+|||||+|.|.|..
T Consensus 121 ~~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 121 IRALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred ceEEEEecCCCchHHHHHHHhcCc
Confidence 368999999999999999999854
No 481
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=92.23 E-value=0.21 Score=53.81 Aligned_cols=71 Identities=15% Similarity=0.207 Sum_probs=52.2
Q ss_pred CcccChHHHHHHHHHH--HHHh---------------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCC
Q 007952 130 VRGVSGGERKRVCIGN--EIII---------------NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQP 192 (583)
Q Consensus 130 ~~~LSgGerqRv~ia~--~L~~---------------~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~ 192 (583)
..+.||||+|-.-+|+ +++. .-.++++||. +-+|...+...+++++++ |.=+|+++=.
T Consensus 377 ~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l---glQliiatP~- 451 (483)
T 3euj_A 377 SSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL---DMQLLIAAPE- 451 (483)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT---TCEEEEEESS-
T ss_pred cCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc---CCEEEEECcc-
Confidence 5689999999644433 3332 1247999999 999999999999999976 6666666633
Q ss_pred ChHHHhhcCeEEEEc
Q 007952 193 SSRLFHKFDKLILLG 207 (583)
Q Consensus 193 ~~~i~~~~D~v~~L~ 207 (583)
.+....|.++.+-
T Consensus 452 --~i~p~v~~~~~~~ 464 (483)
T 3euj_A 452 --NISPERGTTYKLV 464 (483)
T ss_dssp --SCCCSSSEEEECC
T ss_pred --hhhhccCceEEEE
Confidence 3556778887764
No 482
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=92.18 E-value=0.025 Score=65.17 Aligned_cols=31 Identities=26% Similarity=0.470 Sum_probs=27.7
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 14 TGSVNPGEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 14 s~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
++.+.+++.++|.||||+|||||.++|++..
T Consensus 505 ~~~~~~~~~vLL~GppGtGKT~Lakala~~~ 535 (806)
T 1ypw_A 505 KFGMTPSKGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp CCCCCCCCCCCCBCCTTSSHHHHHHHHHHHH
T ss_pred hcCCCCCceeEEECCCCCCHHHHHHHHHHHh
Confidence 5567889999999999999999999999843
No 483
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=91.94 E-value=0.07 Score=56.12 Aligned_cols=41 Identities=10% Similarity=0.050 Sum_probs=28.8
Q ss_pred HHHHHHHHcCCCccccccccCccCcccChHHHHHHHHHHHHHhCCCEEEE
Q 007952 107 RAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFL 156 (583)
Q Consensus 107 ~v~~~l~~lgL~~~~~~~ig~~~~~~LSgGerqRv~ia~~L~~~p~illL 156 (583)
.++++++.++.... ...+|.+|.+++.-..-+...|-++++
T Consensus 181 ~~~~~l~~l~~~~~---------~~~~~~~e~~~l~~~~~~~~kP~i~v~ 221 (397)
T 1wxq_A 181 DVWEAMHKLNLPED---------PTKWSQDDLLAFASEIRRVNKPMVIAA 221 (397)
T ss_dssp HHHHHHHHTTCCSC---------GGGCCHHHHHHHHHHHHHHHSCEEEEE
T ss_pred HHHHHHHHhccCCc---------cccCCHHHHHHHHHhhhccCCCEEEEE
Confidence 45566666665432 236889998888777666779999887
No 484
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=91.93 E-value=0.087 Score=53.21 Aligned_cols=24 Identities=42% Similarity=0.704 Sum_probs=21.1
Q ss_pred CeEEEEECCCCCcHHHHHHHHhCC
Q 007952 20 GEVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 20 Ge~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
+--++|+|++|+|||||++.+.+.
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 345899999999999999998875
No 485
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=91.91 E-value=0.078 Score=47.07 Aligned_cols=42 Identities=14% Similarity=0.145 Sum_probs=29.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCC
Q 007952 150 NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPS 193 (583)
Q Consensus 150 ~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~ 193 (583)
+..+|++||.- .|++..+..+.+.|+.. .....+|++++.+.
T Consensus 76 ~~g~l~ldei~-~l~~~~q~~Ll~~l~~~-~~~~~~I~~t~~~~ 117 (145)
T 3n70_A 76 QGGTLVLSHPE-HLTREQQYHLVQLQSQE-HRPFRLIGIGDTSL 117 (145)
T ss_dssp TTSCEEEECGG-GSCHHHHHHHHHHHHSS-SCSSCEEEEESSCH
T ss_pred CCcEEEEcChH-HCCHHHHHHHHHHHhhc-CCCEEEEEECCcCH
Confidence 45689999984 68888888888888332 22456777777643
No 486
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=91.84 E-value=0.086 Score=51.13 Aligned_cols=23 Identities=35% Similarity=0.580 Sum_probs=20.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhCC
Q 007952 21 EVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 21 e~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
--+||+|++||||||+.+.|+..
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~ 31 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEK 31 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHH
Confidence 45899999999999999999863
No 487
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=91.78 E-value=0.087 Score=49.07 Aligned_cols=41 Identities=12% Similarity=0.212 Sum_probs=28.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCC
Q 007952 150 NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQP 192 (583)
Q Consensus 150 ~p~illLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~ 192 (583)
++.++++||. ..++......+.+.+.+.. .+..+|++++.+
T Consensus 102 ~~~vliiDe~-~~l~~~~~~~l~~~l~~~~-~~~~~i~~~~~~ 142 (226)
T 2chg_A 102 PFKIIFLDEA-DALTADAQAALRRTMEMYS-KSCRFILSCNYV 142 (226)
T ss_dssp SCEEEEEETG-GGSCHHHHHHHHHHHHHTT-TTEEEEEEESCG
T ss_pred CceEEEEeCh-hhcCHHHHHHHHHHHHhcC-CCCeEEEEeCCh
Confidence 6889999995 4567777777766665532 345677777664
No 488
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=91.01 E-value=0.032 Score=52.16 Aligned_cols=21 Identities=29% Similarity=0.341 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 007952 22 VLALMGPSGSGKTTLLNLLSG 42 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g 42 (583)
-++|+|++|+|||||++.+.+
T Consensus 32 ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 589999999999999998876
No 489
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=91.64 E-value=0.073 Score=56.58 Aligned_cols=22 Identities=36% Similarity=0.736 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
.++|+|++|+|||||+|.|.|.
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~ 26 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGE 26 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
No 490
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=91.57 E-value=0.094 Score=52.42 Aligned_cols=27 Identities=33% Similarity=0.548 Sum_probs=22.4
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 18 NPGEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 18 ~~Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
+++.-+.|.||+|+|||||.+.++..+
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 345578999999999999999988643
No 491
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=91.49 E-value=0.12 Score=49.18 Aligned_cols=25 Identities=44% Similarity=0.729 Sum_probs=22.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 20 GEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 20 Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
|..+++=|+-||||||+.+.|+..+
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L 26 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRL 26 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHH
Confidence 5688999999999999999999755
No 492
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=91.48 E-value=0.11 Score=53.63 Aligned_cols=26 Identities=27% Similarity=0.436 Sum_probs=22.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 19 PGEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 19 ~Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
..-.++|+|++|+|||||++.|++.+
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 44589999999999999999998643
No 493
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=91.43 E-value=0.022 Score=53.15 Aligned_cols=23 Identities=39% Similarity=0.530 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007952 22 VLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
-++|+|++|+|||||++.+.+..
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~~ 57 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADDT 57 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998743
No 494
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=91.22 E-value=0.086 Score=58.25 Aligned_cols=25 Identities=36% Similarity=0.530 Sum_probs=22.1
Q ss_pred CeEEEEECCCCCcHHHHHHHHhCCC
Q 007952 20 GEVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 20 Ge~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
--.++|+|++|+|||||+|.|.|..
T Consensus 38 ~~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 38 MVVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp EEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred CcEEEEECCCCCCHHHHHHhHcCCC
Confidence 3468999999999999999999953
No 495
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=91.17 E-value=0.06 Score=50.98 Aligned_cols=21 Identities=48% Similarity=0.820 Sum_probs=18.4
Q ss_pred EEEEECCCCCcHHHHHHH-HhC
Q 007952 22 VLALMGPSGSGKTTLLNL-LSG 42 (583)
Q Consensus 22 ~~~i~G~nGaGKSTLl~~-l~g 42 (583)
-++|+|++|+|||||++. +.|
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~ 38 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTG 38 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 478999999999999998 555
No 496
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=91.15 E-value=0.075 Score=57.08 Aligned_cols=25 Identities=36% Similarity=0.534 Sum_probs=21.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhCC
Q 007952 19 PGEVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 19 ~Ge~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
+|=.++|+|++|+|||||+|.|.|.
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 3445999999999999999999984
No 497
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=91.07 E-value=0.12 Score=50.92 Aligned_cols=26 Identities=35% Similarity=0.457 Sum_probs=22.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhCC
Q 007952 18 NPGEVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 18 ~~Ge~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
.+..-+.|.||+|+|||||.+.++..
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 34456889999999999999999963
No 498
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=91.03 E-value=0.09 Score=54.68 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=22.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhCC
Q 007952 19 PGEVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 19 ~Ge~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
++..++++|++|+|||||+|.|.|.
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhh
Confidence 3567899999999999999999984
No 499
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=90.92 E-value=0.11 Score=53.50 Aligned_cols=32 Identities=28% Similarity=0.294 Sum_probs=25.0
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHhCC
Q 007952 12 GITGSVNPGEVLALMGPSGSGKTTLLNLLSGR 43 (583)
Q Consensus 12 ~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~g~ 43 (583)
.+.++++----++|+|.++||||||++.|++.
T Consensus 150 ~~~leLk~la~V~lvG~~nvGKSTLln~L~~~ 181 (342)
T 1lnz_A 150 YIVLELKVLADVGLVGFPSVGKSTLLSVVSSA 181 (342)
T ss_dssp EEEEEEECCCCEEEESSTTSSHHHHHHHSEEE
T ss_pred hHhhhhhhcCeeeeeCCCCCCHHHHHHHHHcC
Confidence 44455554445899999999999999999873
No 500
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=90.90 E-value=0.1 Score=57.36 Aligned_cols=24 Identities=21% Similarity=0.394 Sum_probs=21.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhCCC
Q 007952 21 EVLALMGPSGSGKTTLLNLLSGRL 44 (583)
Q Consensus 21 e~~~i~G~nGaGKSTLl~~l~g~~ 44 (583)
-.++|+|..|+|||||+|.|.|..
T Consensus 66 ~~V~vvG~~n~GKSTLIN~Llg~~ 89 (550)
T 2qpt_A 66 PMVLVAGQYSTGKTSFIQYLLEQE 89 (550)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc
Confidence 379999999999999999999953
Done!