BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007953
(583 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4E9I|A Chain A, Glucose-6-P Dehydrogenase (Apo Form) From Trypanosoma
Cruzi
pdb|4E9I|B Chain B, Glucose-6-P Dehydrogenase (Apo Form) From Trypanosoma
Cruzi
pdb|4E9I|C Chain C, Glucose-6-P Dehydrogenase (Apo Form) From Trypanosoma
Cruzi
pdb|4E9I|D Chain D, Glucose-6-P Dehydrogenase (Apo Form) From Trypanosoma
Cruzi
pdb|4EM5|A Chain A, Trypanosoma Cruzi Glucose-6-P Dehydrogenase In Complex
With G6p
pdb|4EM5|B Chain B, Trypanosoma Cruzi Glucose-6-P Dehydrogenase In Complex
With G6p
pdb|4EM5|C Chain C, Trypanosoma Cruzi Glucose-6-P Dehydrogenase In Complex
With G6p
pdb|4EM5|D Chain D, Trypanosoma Cruzi Glucose-6-P Dehydrogenase In Complex
With G6p
Length = 541
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 69/172 (40%), Gaps = 11/172 (6%)
Query: 373 ITAKDIEDAKSNSGSQVVSIGLPAYCLLQALLRSAMANSPGILLSDSVTEITSSNRPK-- 430
++A+DI D K QVV PA C+L SA ++PG L SV + S+ P
Sbjct: 311 LSAEDIRDEKVQVLRQVVPAN-PAECVLGQYTASADGSTPGYLDDPSVPK--GSHCPTFA 367
Query: 431 ----DVFFD-WFFNPFLIIKEQIKAENLTEAEEDYLSKLVLFCGNIGRLKDLNVSPPESE 485
V D W PF+I + E L + + ++ F G + +L + SE
Sbjct: 368 VLRLHVNNDRWHGVPFIIRAGKALEERLLDIRIQFKDEIRPF-GESTQRNELVIRAQPSE 426
Query: 486 RKRAELGALARRLQGITKSVSRYPTFRRQFDDLVKTLTEDLAKKNGGSESTN 537
+L A L T T+ R++D + E L + STN
Sbjct: 427 AMYLKLTAKTPGLLNDTHQTELDLTYERRYDVTLPDAYESLIHEALLGNSTN 478
>pdb|3B57|A Chain A, Crystal Structure Of The Lin1889 Protein (Q92an1) From
Listeria Innocua. Northeast Structural Consortium Target
Lkr65
Length = 209
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 422 EITSSNRPKDVFFDWFFNPFLIIKEQIKAE 451
EI + N PK+ F++ L+IK+Q+ E
Sbjct: 146 EIANQNNPKNTTLQHFYDKLLLIKDQLNTE 175
>pdb|3H12|A Chain A, Crystal Structure Of Putative Mandelate Racemase From
Bordetella Bronchiseptica Rb50
pdb|3H12|B Chain B, Crystal Structure Of Putative Mandelate Racemase From
Bordetella Bronchiseptica Rb50
Length = 397
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 4/83 (4%)
Query: 199 VISVVALCKSPYMLFKGWHRLFHDLIGREGPFLETICVPLAGLAIILWPLAVVGAVLGSM 258
VI + + P + WH++FH + R ++G+ I LW L G +
Sbjct: 68 VIGPQLIGEDPANINYLWHKVFHGEVSRNLGHRSVGIAAMSGVDIALWDLK--GRAMNQP 125
Query: 259 VTSIFLGAYA--GVVVYQESSLW 279
+ + G + GV Y S W
Sbjct: 126 IYQLLGGKFHTRGVRAYASSIYW 148
>pdb|3OZM|A Chain A, Crystal Structure Of Enolase Superfamily Member From
Bordetella Bronchiseptica Complexed With Mg, M-Xylarate
And L-Lyxarate
pdb|3OZM|B Chain B, Crystal Structure Of Enolase Superfamily Member From
Bordetella Bronchiseptica Complexed With Mg, M-Xylarate
And L-Lyxarate
pdb|3OZM|C Chain C, Crystal Structure Of Enolase Superfamily Member From
Bordetella Bronchiseptica Complexed With Mg, M-Xylarate
And L-Lyxarate
pdb|3OZM|D Chain D, Crystal Structure Of Enolase Superfamily Member From
Bordetella Bronchiseptica Complexed With Mg, M-Xylarate
And L-Lyxarate
pdb|3OZM|E Chain E, Crystal Structure Of Enolase Superfamily Member From
Bordetella Bronchiseptica Complexed With Mg, M-Xylarate
And L-Lyxarate
pdb|3OZM|F Chain F, Crystal Structure Of Enolase Superfamily Member From
Bordetella Bronchiseptica Complexed With Mg, M-Xylarate
And L-Lyxarate
pdb|3OZM|G Chain G, Crystal Structure Of Enolase Superfamily Member From
Bordetella Bronchiseptica Complexed With Mg, M-Xylarate
And L-Lyxarate
pdb|3OZM|H Chain H, Crystal Structure Of Enolase Superfamily Member From
Bordetella Bronchiseptica Complexed With Mg, M-Xylarate
And L-Lyxarate
pdb|3OZY|A Chain A, Crystal Structure Of Enolase Superfamily Member From
Bordetella Bronchiseptica Complexed With Mg And
M-Xylarate
pdb|3OZY|B Chain B, Crystal Structure Of Enolase Superfamily Member From
Bordetella Bronchiseptica Complexed With Mg And
M-Xylarate
Length = 389
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 4/83 (4%)
Query: 199 VISVVALCKSPYMLFKGWHRLFHDLIGREGPFLETICVPLAGLAIILWPLAVVGAVLGSM 258
VI + + P + WH++FH + R ++G+ I LW L G +
Sbjct: 68 VIGPQLIGEDPANINYLWHKVFHGEVSRNLGHRSVGIAAMSGVDIALWDLK--GRAMNQP 125
Query: 259 VTSIFLGAYA--GVVVYQESSLW 279
+ + G + GV Y S W
Sbjct: 126 IYQLLGGKFHTRGVRAYASSIYW 148
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.140 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,693,526
Number of Sequences: 62578
Number of extensions: 596670
Number of successful extensions: 1307
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1304
Number of HSP's gapped (non-prelim): 6
length of query: 583
length of database: 14,973,337
effective HSP length: 104
effective length of query: 479
effective length of database: 8,465,225
effective search space: 4054842775
effective search space used: 4054842775
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.4 bits)