Query 007953
Match_columns 583
No_of_seqs 46 out of 48
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 14:33:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007953.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007953hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pzl_A Hepatocyte nuclear fact 93.6 0.61 2.1E-05 42.9 11.1 118 394-523 83-201 (237)
2 2nxx_A Ultraspiracle (USP, NR2 91.9 0.7 2.4E-05 43.1 9.3 114 399-523 84-197 (235)
3 3oll_A Estrogen receptor beta; 91.9 1.3 4.5E-05 41.3 11.1 120 398-522 79-202 (240)
4 2iz2_A FTZ-F1 alpha, nuclear h 89.4 2.7 9.3E-05 39.6 10.9 115 398-523 92-207 (243)
5 3k6p_A Steroid hormone recepto 89.1 1 3.4E-05 42.7 7.7 114 397-522 93-210 (248)
6 1yye_A ER-beta, estrogen recep 88.6 2.9 0.0001 40.1 10.7 121 398-522 77-200 (268)
7 2p1t_A Retinoic acid receptor 88.2 0.62 2.1E-05 43.3 5.5 109 404-523 93-201 (240)
8 3ltx_A Estrogen receptor; cons 88.0 2.2 7.5E-05 40.2 9.2 115 397-522 81-195 (243)
9 1l2j_A Estrogen receptor beta; 86.9 1.7 5.7E-05 41.9 7.9 119 398-522 105-228 (271)
10 1g2n_A Ultraspiracle protein; 86.5 1.7 5.9E-05 41.3 7.7 100 414-523 121-220 (264)
11 3plz_A FTZ-F1 related protein; 86.1 2 6.8E-05 41.0 7.9 115 398-522 102-219 (257)
12 2e2r_A Estrogen-related recept 84.3 3.1 0.00011 39.2 8.2 112 399-522 95-206 (244)
13 1ymt_A Steroidogenic factor 1; 83.8 3.6 0.00012 38.6 8.4 117 397-523 90-209 (246)
14 2ocf_A Estrogen receptor; estr 83.7 4.2 0.00014 40.0 9.2 121 398-522 90-214 (298)
15 1lbd_A RXR_LBD, retinoid X rec 83.6 1.9 6.6E-05 41.2 6.6 115 398-523 129-243 (282)
16 3dzy_A Retinoic acid receptor 81.4 2.9 9.8E-05 43.9 7.4 104 409-523 324-428 (467)
17 3ipq_A Oxysterols receptor LXR 80.8 4 0.00014 39.4 7.7 104 409-522 144-247 (283)
18 1ovl_A Orphan nuclear receptor 80.7 9.3 0.00032 36.3 10.0 114 398-523 120-233 (271)
19 1fcy_A RAR-gamma-1, retinoic a 80.4 2.6 8.8E-05 39.3 6.0 107 405-523 97-203 (236)
20 3tx7_B Nuclear receptor subfam 80.1 3.4 0.00012 42.0 7.2 113 400-522 199-314 (352)
21 1sqn_A PR, progesterone recept 79.6 12 0.0004 35.8 10.4 116 399-523 88-206 (261)
22 3mnp_A Glucocorticoid receptor 78.4 6.1 0.00021 37.9 8.0 113 399-522 89-206 (261)
23 1xpc_A Estrogen receptor; nucl 76.7 5.4 0.00018 37.4 7.0 72 397-471 80-152 (248)
24 3kmr_A Retinoic acid receptor 76.4 4.7 0.00016 38.7 6.6 102 410-522 125-226 (266)
25 3n00_A REV-ERBA-alpha; reverba 76.0 6 0.0002 37.7 7.2 103 409-522 121-223 (245)
26 3v3e_B Nuclear receptor subfam 75.8 6.3 0.00021 37.8 7.3 103 409-522 108-210 (257)
27 1t7r_A Androgen receptor; nucl 74.7 10 0.00035 36.3 8.5 115 400-523 97-214 (269)
28 3cqv_A Nuclear receptor subfam 74.4 7.3 0.00025 35.3 7.0 104 409-523 76-179 (199)
29 1xdk_B RAR-beta, retinoic acid 73.1 4.1 0.00014 39.8 5.4 106 404-521 123-228 (303)
30 1xvp_B Orphan nuclear receptor 71.5 14 0.00048 34.5 8.4 80 437-523 136-215 (246)
31 3ilz_A Thyroid hormone recepto 68.6 8.3 0.00028 36.9 6.3 102 410-522 127-228 (267)
32 2r40_D Ecdysone receptor, 20-h 67.3 6.5 0.00022 37.6 5.2 103 409-523 124-229 (266)
33 3vhv_A Mineralocorticoid recep 67.2 14 0.00048 35.3 7.5 69 399-469 87-156 (260)
34 2nxx_E Ecdysone receptor (ECR, 65.4 21 0.00072 33.6 8.3 103 409-523 108-211 (248)
35 1z5x_E Ecdysone receptor ligan 64.4 18 0.00063 35.7 8.0 102 410-523 173-275 (310)
36 3cjw_A COUP transcription fact 63.5 28 0.00096 32.4 8.7 111 399-522 84-197 (244)
37 3vhu_A Mineralocorticoid recep 63.3 23 0.00077 34.9 8.3 113 399-522 121-238 (294)
38 3u9q_A Peroxisome proliferator 61.3 17 0.0006 35.0 7.0 105 409-523 127-233 (269)
39 1pdu_A DHR38, nuclear hormone 60.5 16 0.00053 34.7 6.4 65 400-468 95-159 (244)
40 1hg4_A Ultraspiracle; nuclear 59.7 20 0.00067 34.1 7.0 71 443-522 163-233 (279)
41 3f5c_B Nuclear receptor subfam 59.2 27 0.00092 33.7 7.9 78 437-523 155-232 (268)
42 3dzy_D Peroxisome proliferator 58.9 41 0.0014 34.6 9.7 105 409-523 276-382 (419)
43 1nq7_A Nuclear receptor ROR-be 57.0 57 0.002 30.5 9.6 102 409-523 106-207 (244)
44 2o4j_A Vitamin D3 receptor; nu 56.3 23 0.0008 34.4 7.0 78 437-523 143-222 (292)
45 1osh_A BIle acid receptor; nuc 51.8 43 0.0015 30.8 7.7 78 437-523 121-198 (232)
46 2hc4_A Vitamin D receptor; alp 51.3 37 0.0013 33.2 7.6 78 437-523 186-263 (302)
47 1nrl_A Orphan nuclear receptor 47.4 70 0.0024 31.8 8.9 100 413-523 179-280 (316)
48 3vi8_A Peroxisome proliferator 46.5 52 0.0018 31.8 7.7 78 437-523 159-236 (273)
49 3b0t_A Vitamin D3 receptor; nu 43.7 37 0.0013 31.7 6.0 78 437-523 140-219 (254)
50 1n83_A Nuclear receptor ROR-al 35.4 1.8E+02 0.0062 27.8 9.5 77 437-523 146-222 (270)
51 2oqj_C Peptide 2G12.1 (ACPPSHV 35.1 8.9 0.0003 26.3 0.2 13 298-310 6-18 (26)
52 2khv_A Phage integrase; soluti 32.3 47 0.0016 26.1 4.1 46 481-532 42-87 (106)
53 2khq_A Integrase; all-alpha, s 30.1 69 0.0024 24.7 4.7 46 482-532 43-88 (110)
54 3up3_A Acedaf-12; ligand bindi 29.9 63 0.0022 30.6 5.2 84 431-524 123-211 (243)
55 3l0l_A Nuclear receptor ROR-ga 29.9 1.2E+02 0.0041 28.5 7.1 37 437-473 137-173 (248)
56 3p0u_A Nuclear receptor subfam 26.6 71 0.0024 30.1 4.9 72 442-522 129-200 (249)
57 2oxo_A Integrase; DNA-binding 25.7 1.1E+02 0.0039 22.4 5.0 46 482-532 42-87 (103)
58 2kj9_A Integrase; DNA_BRE_C su 24.0 94 0.0032 25.1 4.6 46 482-532 51-96 (118)
59 2kiw_A INT protein; alpha, str 23.4 1.3E+02 0.0046 23.2 5.2 46 482-532 40-85 (111)
60 2kj8_A Putative prophage CPS-5 22.1 1.1E+02 0.0038 24.4 4.6 46 482-532 46-91 (118)
61 1srz_A Gamma-aminobutyric acid 21.9 41 0.0014 25.6 1.9 20 126-146 49-68 (68)
62 2xov_A Rhomboid protease GLPG; 20.7 1.2E+02 0.0039 27.5 4.9 16 44-59 107-122 (181)
No 1
>1pzl_A Hepatocyte nuclear factor 4-alpha; transcription; HET: MYR; 2.10A {Homo sapiens} SCOP: a.123.1.1 PDB: 3fs1_A* 1m7w_A* 1lv2_A*
Probab=93.55 E-value=0.61 Score=42.86 Aligned_cols=118 Identities=19% Similarity=0.185 Sum_probs=76.1
Q ss_pred cchHHHHHHHHHhhhcCCCceEeeCCceeecccCCCccccchhcchhHH-HHHHHHHhccCChhHHHHhHhhhhccCCcc
Q 007953 394 LPAYCLLQALLRSAMANSPGILLSDSVTEITSSNRPKDVFFDWFFNPFL-IIKEQIKAENLTEAEEDYLSKLVLFCGNIG 472 (583)
Q Consensus 394 LPAyslL~~LL~SaKanS~GlllsD~~~EiT~~NrPkd~~fDWff~Pll-viKeQIk~~~L~E~EE~yL~KlvL~~~d~~ 472 (583)
-..+.+|..--+|.+ +++.+++.|| ..+.. |.++..-+.-++++++ -+-+.++.+++|++|=.||+-+++++.|..
T Consensus 83 ~~~~~~L~~a~~s~~-~~~~~~~~~g-~~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~L~ld~~E~~~L~ai~l~~~~~~ 159 (237)
T 1pzl_A 83 AGEHLLLGATKRSMV-FKDVLLLGND-YIVPR-HCPELAEMSRVSIRILDELVLPFQELQIDDNEYAYLKAIIFFDPDAK 159 (237)
T ss_dssp HHHHHHHHHHHHHTT-SSSEEECTTS-CEEES-SCGGGGGGHHHHHHHHHHTHHHHHHHTCCHHHHHHHHHHHHCCTTCT
T ss_pred HHHHHHHHHHHHhhc-cCCceeecCC-cccCc-cchhhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHhCCCCC
Confidence 345677777778876 6778999999 76653 3344322233456654 566899999999999999999999987654
Q ss_pred cccCCCCCCCchhhhHHHHHHHHHHhhhhhhcccCCchhhhhHHHHHHHHH
Q 007953 473 RLKDLNVSPPESERKRAELGALARRLQGITKSVSRYPTFRRQFDDLVKTLT 523 (583)
Q Consensus 473 r~~d~~g~pp~d~~rrAqLqai~RRLqGI~~s~SR~PT~RRrf~~lvK~L~ 523 (583)
... ....+.+- -+.+++-|+--++ .++|....||-++++.|.
T Consensus 160 ~l~------~~~~ve~~-q~~~~~~L~~y~~--~~~~~~~~Rf~~LL~~l~ 201 (237)
T 1pzl_A 160 GLS------DPGKIKRL-RSQVQVSLEDYIN--DRQYDSRGRFGELLLLLP 201 (237)
T ss_dssp TCS------CHHHHHHH-HHHHHHHHHHHHH--SSSSCCTTHHHHHHTHHH
T ss_pred CCC------cHHHHHHH-HHHHHHHHHHHHH--hcCCChhhHHHHHHHHHH
Confidence 431 11222221 2233444444443 367777789998887663
No 2
>2nxx_A Ultraspiracle (USP, NR2B4); hormone receptor, APO and holo ligand binding pocket, hormone/growth factor complex; HET: P1A; 2.75A {Tribolium castaneum}
Probab=91.91 E-value=0.7 Score=43.05 Aligned_cols=114 Identities=15% Similarity=0.172 Sum_probs=69.1
Q ss_pred HHHHHHHhhhcCCCceEeeCCceeecccCCCccccchhcchhHHHHHHHHHhccCChhHHHHhHhhhhccCCcccccCCC
Q 007953 399 LLQALLRSAMANSPGILLSDSVTEITSSNRPKDVFFDWFFNPFLIIKEQIKAENLTEAEEDYLSKLVLFCGNIGRLKDLN 478 (583)
Q Consensus 399 lL~~LL~SaKanS~GlllsD~~~EiT~~NrPkd~~fDWff~PllviKeQIk~~~L~E~EE~yL~KlvL~~~d~~r~~d~~ 478 (583)
+|..--||.+. ++++++.|| ..++...-....+-+++-..+.-+-..++.++++++|=.||+-++|++.|....
T Consensus 84 ~L~~a~rs~~~-~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ld~~E~~lLkaivL~~pd~~gL---- 157 (235)
T 2nxx_A 84 IAAFSHRSMQA-QDAIVLATG-LTVNKSTAHAVGVGNIYDRVLSELVNKMKEMKMDKTELGCLRAIILYNPDVRGI---- 157 (235)
T ss_dssp HHHHHHTTSSS-SSSEECSSS-CEECSSSCSSSSCSSSHHHHHHHTHHHHHHHTCCHHHHHHHHHHHHCCTTSTTC----
T ss_pred HHHHHHhcccC-CCceEecCC-cccccchhhhhchHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCC----
Confidence 34444466666 688999999 877655433334445444444457789999999999999999999998764322
Q ss_pred CCCCchhhhHHHHHHHHHHhhhhhhcccCCchhhhhHHHHHHHHH
Q 007953 479 VSPPESERKRAELGALARRLQGITKSVSRYPTFRRQFDDLVKTLT 523 (583)
Q Consensus 479 g~pp~d~~rrAqLqai~RRLqGI~~s~SR~PT~RRrf~~lvK~L~ 523 (583)
...+.+.+.| +.+.+=|+-.++ .++|.-..||-+++..|-
T Consensus 158 --~~~~~v~~~q-~~~~~aL~~y~~--~~~~~~~~Rf~~LL~~L~ 197 (235)
T 2nxx_A 158 --KSVQEVEMLR-EKIYGVLEEYTR--TTHPNEPGRFAKLLLRLP 197 (235)
T ss_dssp --SCHHHHHHHH-HHHHHHHHHHHH--HHCTTCTTHHHHHHTHHH
T ss_pred --CCHHHHHHHH-HHHHHHHHHHHH--HhCCChhhHHHHHHHHhH
Confidence 1122222222 111122222222 346766778888876553
No 3
>3oll_A Estrogen receptor beta; steroid binding, phosphorylation, hormone receptor-activator; HET: PTR EST; 1.50A {Homo sapiens} SCOP: a.123.1.1 PDB: 1u3s_A* 1u3q_A* 1x78_A* 1x7b_A* 1x7j_A* 1x76_A* 2yjd_A* 3ols_A* 3omo_A* 3omp_A* 3omq_A* 1u3r_A* 1u9e_A* 1qkm_A* 2giu_A* 1nde_A* 2jj3_A* 2i0g_A* 2qtu_A* 2z4b_A* ...
Probab=91.86 E-value=1.3 Score=41.33 Aligned_cols=120 Identities=12% Similarity=0.147 Sum_probs=72.0
Q ss_pred HHHHHHHHhhhcCCCceEeeCCceeecccCCC-ccccchhcchhHHHHHHHHHhccCChhHHHHhHhhhhccCCcccccC
Q 007953 398 CLLQALLRSAMANSPGILLSDSVTEITSSNRP-KDVFFDWFFNPFLIIKEQIKAENLTEAEEDYLSKLVLFCGNIGRLKD 476 (583)
Q Consensus 398 slL~~LL~SaKanS~GlllsD~~~EiT~~NrP-kd~~fDWff~PllviKeQIk~~~L~E~EE~yL~KlvL~~~d~~r~~d 476 (583)
.+|..--+|.+. .+.+++.|| ..++....- ...+-++ ++.+.-+-.++++++++++|=.||+-++|++.|.... .
T Consensus 79 ~~L~~a~~s~~~-~~~l~~~~g-~~~~~~~~~~~~~~~~~-~~~l~~~~~~l~~L~ld~~E~~lLkAivL~~pd~~gL-s 154 (240)
T 3oll_A 79 LMMGLMWRSIDH-PGKLIFAPD-LVLDRDEGKCVEGILEI-FDMLLATTSRFRELKLQHKEYLCVKAMILLNSSMYPL-V 154 (240)
T ss_dssp HHHHHHHHHTTS-TTEEEEETB-EEEEGGGGGGSTTHHHH-HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHCSCCCCC-C
T ss_pred HHHHHHHHccCC-CCeeEecCC-cccchhhHHHHhhHHHH-HHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCc-c
Confidence 344444456664 478999999 777654321 2233443 4677777889999999999999999999999876443 2
Q ss_pred CCCCCCchhhhH--HHHHHHHHHhhhhhh-cccCCchhhhhHHHHHHHH
Q 007953 477 LNVSPPESERKR--AELGALARRLQGITK-SVSRYPTFRRQFDDLVKTL 522 (583)
Q Consensus 477 ~~g~pp~d~~rr--AqLqai~RRLqGI~~-s~SR~PT~RRrf~~lvK~L 522 (583)
++.. ......+ ...+.+.+-|+-.+. +-.++|.-..||-+++-.|
T Consensus 155 ~~~~-~~~~~~~v~~~q~~~~~aL~~y~~~~~~~~~~~~~Rf~~LL~~L 202 (240)
T 3oll_A 155 TATQ-DADSSRKLAHLLNAVTDALVWVIAKSGISSQQQSMRLANLLMLL 202 (240)
T ss_dssp CCC---CHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred cccc-hhhHHHHHHHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHh
Confidence 2211 1111111 112334444443332 2234678888998887543
No 4
>2iz2_A FTZ-F1 alpha, nuclear hormone receptor FTZ-F1; nuclear protein, phosphorylation, PAIR-RULE protein; 2.8A {Drosophila melanogaster} PDB: 2xhs_A
Probab=89.37 E-value=2.7 Score=39.63 Aligned_cols=115 Identities=12% Similarity=0.127 Sum_probs=69.3
Q ss_pred HHHHHHHHhhhcC-CCceEeeCCceeecccCCCccccchhcchhHHHHHHHHHhccCChhHHHHhHhhhhccCCcccccC
Q 007953 398 CLLQALLRSAMAN-SPGILLSDSVTEITSSNRPKDVFFDWFFNPFLIIKEQIKAENLTEAEEDYLSKLVLFCGNIGRLKD 476 (583)
Q Consensus 398 slL~~LL~SaKan-S~GlllsD~~~EiT~~NrPkd~~fDWff~PllviKeQIk~~~L~E~EE~yL~KlvL~~~d~~r~~d 476 (583)
.+|..--+|.+.+ ++++++.|| ..++..+-....+-+ +.+.+.-+-..++.++++++|=.||+-++|++.|....
T Consensus 92 ~~L~~a~rs~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~L~ld~~E~~lLkAivL~npd~~gL-- 167 (243)
T 2iz2_A 92 LVLDHLHHRIHNGLPDETQLNNG-QVFNLMSLGLLGVPQ-LGDYFNELQNKLQDLKFDMGDYVCMKFLILLNPSVRGI-- 167 (243)
T ss_dssp HHHHHHHHHHHSCCCSCCBCSSS-CBCCCCTTTTSSTTS-SHHHHHHHHHHHHHTTCCHHHHHHHHHHHHCCTTSTTC--
T ss_pred HHHHHHHHhhhcCCCCceeecCC-cccChhhHhhcchHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCc--
Confidence 3444445677654 677889999 666544322222223 34667777789999999999999999999998764333
Q ss_pred CCCCCCchhhhHHHHHHHHHHhhhhhhcccCCchhhhhHHHHHHHHH
Q 007953 477 LNVSPPESERKRAELGALARRLQGITKSVSRYPTFRRQFDDLVKTLT 523 (583)
Q Consensus 477 ~~g~pp~d~~rrAqLqai~RRLqGI~~s~SR~PT~RRrf~~lvK~L~ 523 (583)
...+.+.+.| +.+.+=|+--++ .++|.-..||-+++..|-
T Consensus 168 ----~~~~~v~~lq-~~~~~aL~~y~~--~~~p~~~~Rf~~LL~~L~ 207 (243)
T 2iz2_A 168 ----VNRKTVSEGH-DNVQAALLDYTL--TCYPSVNDKFRGLVNILP 207 (243)
T ss_dssp ----SCHHHHHHHH-HHHHHHHHHHHH--HHCTTSTTHHHHHHTHHH
T ss_pred ----ccHHHHHHHH-HHHHHHHHHHHH--HhCCChhhHHHHHHHHHH
Confidence 1122232222 122222333332 256766778887766553
No 5
>3k6p_A Steroid hormone receptor ERR1; estrogen related receptor alpha, DNA-binding, isopeptide BON binding, nucleus, phosphoprotein, transcription; HET: 5FB; 2.00A {Homo sapiens} SCOP: a.123.1.1 PDB: 1xb7_A 2pjl_A* 3d24_A
Probab=89.08 E-value=1 Score=42.69 Aligned_cols=114 Identities=17% Similarity=0.127 Sum_probs=67.3
Q ss_pred HHHHHHHHHhhhcCCCceEeeCCceeecccCCCccccchhcchhHHHHHHHHHhccCChhHHHHhHhhhhccCCcccccC
Q 007953 397 YCLLQALLRSAMANSPGILLSDSVTEITSSNRPKDVFFDWFFNPFLIIKEQIKAENLTEAEEDYLSKLVLFCGNIGRLKD 476 (583)
Q Consensus 397 yslL~~LL~SaKanS~GlllsD~~~EiT~~NrPkd~~fDWff~PllviKeQIk~~~L~E~EE~yL~KlvL~~~d~~r~~d 476 (583)
..+|..--+|.+.+ +++++.|| ..++...--...+.| +++++.-+-.++++++++++|=.||+-++|++.|....
T Consensus 93 l~lL~~a~~s~~~~-~~l~~~~g-~~~~~~~~~~~~~~~-~~~~l~~~~~~l~~L~ld~~E~~lLkAivL~npd~~gL-- 167 (248)
T 3k6p_A 93 VLVLGVAQRSLPLQ-DELAFAED-LVLDEEGARAAGLGE-LGAALLQLVRRLQALRLEREEYVLLKALALANSDSVHI-- 167 (248)
T ss_dssp HHHHHHHHHHTTSS-SCEEEETT-EEECHHHHHHTTTTT-HHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTCCCTTC--
T ss_pred HHHHHHHHHccCCC-CeEEeCCC-cccChhhhhhccHHH-HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCC--
Confidence 34555556677776 89999999 777542111122334 35777778889999999999999999999998765433
Q ss_pred CCCCCCchhhhHHHHHHHHHHhhhhhhcccCCc----hhhhhHHHHHHHH
Q 007953 477 LNVSPPESERKRAELGALARRLQGITKSVSRYP----TFRRQFDDLVKTL 522 (583)
Q Consensus 477 ~~g~pp~d~~rrAqLqai~RRLqGI~~s~SR~P----T~RRrf~~lvK~L 522 (583)
-....+.+.| +.+.+=|+-.++ +++| .-..||-+++-.|
T Consensus 168 ----~~~~~ve~lq-~~~~~aL~~y~~--~~~~~~~~~~~~Rf~~LL~~L 210 (248)
T 3k6p_A 168 ----EDAEAVEQLR-EALHEALLEYEA--GRAGPGGGAERRRAGRLLLTL 210 (248)
T ss_dssp ----SCHHHHHHHH-HHHHHHHHHHHH--TC----CCCCCH-HHHHHTTH
T ss_pred ----CCHHHHHHHH-HHHHHHHHHHHH--HhCCCCccchHHHHHHHHHHH
Confidence 1112222222 112222332322 4566 6667787776433
No 6
>1yye_A ER-beta, estrogen receptor beta; ER-beta, nuclear receptor, transcription factor, agonist; HET: 196; 2.03A {Homo sapiens} SCOP: a.123.1.1 PDB: 1yy4_A*
Probab=88.58 E-value=2.9 Score=40.13 Aligned_cols=121 Identities=11% Similarity=0.140 Sum_probs=70.2
Q ss_pred HHHHHHHHhhhcCCCceEeeCCceeecccCCC-ccccchhcchhHHHHHHHHHhccCChhHHHHhHhhhhccCCcccccC
Q 007953 398 CLLQALLRSAMANSPGILLSDSVTEITSSNRP-KDVFFDWFFNPFLIIKEQIKAENLTEAEEDYLSKLVLFCGNIGRLKD 476 (583)
Q Consensus 398 slL~~LL~SaKanS~GlllsD~~~EiT~~NrP-kd~~fDWff~PllviKeQIk~~~L~E~EE~yL~KlvL~~~d~~r~~d 476 (583)
.+|..--+|.+.+ +.+++.+| ..++...-. ...+-+ +++.+.-+-.+++.++++++|=.||+-++|++.|.....+
T Consensus 77 ~lL~~a~rs~~~~-~~l~~~~g-~~~~~~~~~~~~~~~~-~~~~l~~~~~~l~~L~ld~~E~~lLkAIvLfnpd~~gLs~ 153 (268)
T 1yye_A 77 LMMGLMWRSIDHP-GKLIFAPD-LVLDRDEGKCVEGILE-IFDMLLATTSRFRELKLQHKEYLCVKAMILLNSSMYPLVT 153 (268)
T ss_dssp HHHHHHHHHTTST-TEEEEETT-EEEEGGGGGGSTTHHH-HHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHTCCC-----
T ss_pred HHHHHHHHhccCC-CceEecCC-cccChhhHhhhccHHH-HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCccc
Confidence 3444445666654 77888999 666543211 122334 3467777788999999999999999999999877544421
Q ss_pred CC-CCCCchhhhHHHHHHHHHHhhhhhhcc-cCCchhhhhHHHHHHHH
Q 007953 477 LN-VSPPESERKRAELGALARRLQGITKSV-SRYPTFRRQFDDLVKTL 522 (583)
Q Consensus 477 ~~-g~pp~d~~rrAqLqai~RRLqGI~~s~-SR~PT~RRrf~~lvK~L 522 (583)
.. ...-.+.+.+. .+.+.+-|+-.++.- ..+|.-..||-+++..|
T Consensus 154 ~~~~~~~~~~v~~~-q~~~~~aL~~y~~~~~~~~~~~~~Rf~~LLl~L 200 (268)
T 1yye_A 154 ATQDADSSRKLAHL-LNAVTDALVWVIAKSGISSQQQSMRLANLLMLL 200 (268)
T ss_dssp -----CCHHHHHHH-HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHH-HHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHH
Confidence 11 11112333322 233444444444321 12677778998887755
No 7
>2p1t_A Retinoic acid receptor RXR-alpha; protein-ligand complex, hormone receptor; HET: 3TN; 1.80A {Homo sapiens} SCOP: a.123.1.1 PDB: 1mvc_A* 1mzn_A* 1mv9_A* 2p1u_A* 2p1v_A* 2zxz_A* 2zy0_A* 3fug_A* 3nsp_A 3nsq_A* 3r29_A 3r2a_A* 3r5m_A* 3e94_A* 3kwy_A* 1fby_A* 3uvv_B* 3fc6_A* 1rdt_A* 3fal_A* ...
Probab=88.16 E-value=0.62 Score=43.31 Aligned_cols=109 Identities=19% Similarity=0.249 Sum_probs=66.0
Q ss_pred HHhhhcCCCceEeeCCceeecccCCCccccchhcchhHHHHHHHHHhccCChhHHHHhHhhhhccCCcccccCCCCCCCc
Q 007953 404 LRSAMANSPGILLSDSVTEITSSNRPKDVFFDWFFNPFLIIKEQIKAENLTEAEEDYLSKLVLFCGNIGRLKDLNVSPPE 483 (583)
Q Consensus 404 L~SaKanS~GlllsD~~~EiT~~NrPkd~~fDWff~PllviKeQIk~~~L~E~EE~yL~KlvL~~~d~~r~~d~~g~pp~ 483 (583)
-||.+. .+++++.|| ..++..+-..+.+-+.+-..+.-+-+.++.+++|++|=.||+-+++++.|.... ...
T Consensus 93 ~rs~~~-~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ld~~E~~~Lkai~l~~pd~~gl------~~~ 164 (240)
T 2p1t_A 93 HRSIAV-KDGILLATG-LHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGL------SNP 164 (240)
T ss_dssp HHTTTS-SSEEECTTS-CEEEHHHHHTTTCHHHHHHHHHHTHHHHHHTTCCHHHHHHHHHHHHSCTTCTTC------SCH
T ss_pred HhhccC-CCceEecCC-cccccchhhhhchHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCCCCC------CCH
Confidence 355544 578999999 766553322223333333344456678999999999999999999998765333 112
Q ss_pred hhhhHHHHHHHHHHhhhhhhcccCCchhhhhHHHHHHHHH
Q 007953 484 SERKRAELGALARRLQGITKSVSRYPTFRRQFDDLVKTLT 523 (583)
Q Consensus 484 d~~rrAqLqai~RRLqGI~~s~SR~PT~RRrf~~lvK~L~ 523 (583)
..+.+.| |.+.+-|+-.++. ++|....||-+++..|.
T Consensus 165 ~~ve~~q-~~~~~~L~~y~~~--~~~~~~~Rf~~LL~~l~ 201 (240)
T 2p1t_A 165 AEVEALR-EKVYASLEAYCKH--KYPEQPGRFAKLLLRLP 201 (240)
T ss_dssp HHHHHHH-HHHHHHHHHHHHH--HCTTCTTHHHHHHTTHH
T ss_pred HHHHHHH-HHHHHHHHHHHHH--hCCCchhHHHHHHHHHH
Confidence 2232222 2233334444432 57777788888876554
No 8
>3ltx_A Estrogen receptor; constitutive, nuclear receptor, DNA-binding, metal-binding, nucleus, transcription, transcription regulation, zinc-finger; 2.60A {Crassostrea gigas}
Probab=87.96 E-value=2.2 Score=40.16 Aligned_cols=115 Identities=17% Similarity=0.204 Sum_probs=70.0
Q ss_pred HHHHHHHHHhhhcCCCceEeeCCceeecccCCCccccchhcchhHHHHHHHHHhccCChhHHHHhHhhhhccCCcccccC
Q 007953 397 YCLLQALLRSAMANSPGILLSDSVTEITSSNRPKDVFFDWFFNPFLIIKEQIKAENLTEAEEDYLSKLVLFCGNIGRLKD 476 (583)
Q Consensus 397 yslL~~LL~SaKanS~GlllsD~~~EiT~~NrPkd~~fDWff~PllviKeQIk~~~L~E~EE~yL~KlvL~~~d~~r~~d 476 (583)
..+|..--+|...+...++..|| ..++........+-+ +++++.-+-+.++.++++++|=.||+-++|++.|....
T Consensus 81 l~~L~~a~~s~~~~~~~l~~~~g-~~~~~~~~~~~~~~~-~~~~i~~~~~~l~~L~ld~~E~~lLkaivL~~pd~~gL-- 156 (243)
T 3ltx_A 81 LLLLNCAFRSIEHGGKSLAFAPD-LVLDRSSWSTVEMTE-IFEQVAAVSEQMMQNHLHKDELLLLQAMVLVNAEVRRL-- 156 (243)
T ss_dssp HHHHHHHHHTTTTTTSEEEEETT-EEEEHHHHHHTTCHH-HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCCSCC--
T ss_pred HHHHHHHHHhccCCCCeEEecCC-cccchhhhcccCHHH-HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCC--
Confidence 34445555677777777999999 766543211112223 34666677789999999999999999999998765433
Q ss_pred CCCCCCchhhhHHHHHHHHHHhhhhhhcccCCchhhhhHHHHHHHH
Q 007953 477 LNVSPPESERKRAELGALARRLQGITKSVSRYPTFRRQFDDLVKTL 522 (583)
Q Consensus 477 ~~g~pp~d~~rrAqLqai~RRLqGI~~s~SR~PT~RRrf~~lvK~L 522 (583)
.....+.+.| +.+.+=|+-.++ .++|.-..||-+++-.|
T Consensus 157 ----~~~~~v~~lq-~~~~~aL~~y~~--~~~p~~~~Rf~~LL~~L 195 (243)
T 3ltx_A 157 ----ASYNQIFNMQ-QSLLDAIVDTAQ--KYHPDNVRHVPAVLLLL 195 (243)
T ss_dssp ----TTHHHHHHHH-HHHHHHHHHHHH--HHSTTCSSHHHHHHHHH
T ss_pred ----CCHHHHHHHH-HHHHHHHHHHHH--HhCCChhhHHHHHHHHH
Confidence 1122233332 222222332232 35677777888876543
No 9
>1l2j_A Estrogen receptor beta; nuclear receptor, transcription factor, antagonist transcription receptor; HET: ETC; 2.95A {Homo sapiens} SCOP: a.123.1.1
Probab=86.95 E-value=1.7 Score=41.89 Aligned_cols=119 Identities=11% Similarity=0.152 Sum_probs=66.6
Q ss_pred HHHHHHHHhhhcCCCceEeeCCceeecccCCC-ccccchhcchhHHHHHHHHHhccCChhHHHHhHhhhhccCCcccccC
Q 007953 398 CLLQALLRSAMANSPGILLSDSVTEITSSNRP-KDVFFDWFFNPFLIIKEQIKAENLTEAEEDYLSKLVLFCGNIGRLKD 476 (583)
Q Consensus 398 slL~~LL~SaKanS~GlllsD~~~EiT~~NrP-kd~~fDWff~PllviKeQIk~~~L~E~EE~yL~KlvL~~~d~~r~~d 476 (583)
.+|..--+|.+. ++.+++.|| ..++..... ...+-+ +++++.-+-.+++.++++++|=.||+-++|++.|.....+
T Consensus 105 ~iL~~a~rs~~~-~~~l~~~~g-~~~~~~~~~~~~g~~~-~~~~l~~~~~~l~~L~ld~~E~~lLkAIvLfnpd~~gLs~ 181 (271)
T 1l2j_A 105 LMMGLMWRSIDH-PGKLIFAPD-LVLDRDEGKCVEGILE-IFDMLLATTSRFRELKLQHKEYLCVKAMILLNSSMYPLVT 181 (271)
T ss_dssp HHHHHHHHTSSS-TTEECSSSS-CCEETGGGGGSTTHHH-HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC----CCC
T ss_pred HHHHHHHHhhcc-CCeeeecCC-ccccchhhhhhccHHH-HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcCCCcc
Confidence 444444566665 467888888 655543211 112233 3567777788999999999999999999999877544311
Q ss_pred CCCCCCch---hhhHHHHHHHHHHhhhhhhcc-cCCchhhhhHHHHHHHH
Q 007953 477 LNVSPPES---ERKRAELGALARRLQGITKSV-SRYPTFRRQFDDLVKTL 522 (583)
Q Consensus 477 ~~g~pp~d---~~rrAqLqai~RRLqGI~~s~-SR~PT~RRrf~~lvK~L 522 (583)
.. +... .+.+. .+.+.+-|+-.+..- ...|.-..||-+++..|
T Consensus 182 -~~-~~~~~~~~v~~~-q~~~~~aL~~y~~~~~~~~~~~~~Rf~~LLl~L 228 (271)
T 1l2j_A 182 -AT-QDADSSRKLAHL-LNAVTDALVWVIAKSGISSQQQSMRLANLLMLL 228 (271)
T ss_dssp -CG-GGHHHHHHHHHH-HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred -ch-hhHHHHHHHHHH-HHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHH
Confidence 10 0011 11111 123333333333221 12577778999887665
No 10
>1g2n_A Ultraspiracle protein; antiparallel alpha-helical sandwich, structural proteomics in europe, spine, structural genomics, gene regulation; HET: EPH; 1.65A {Heliothis virescens} SCOP: a.123.1.1 PDB: 2r40_A* 1r20_A* 1r1k_A* 3ixp_A*
Probab=86.51 E-value=1.7 Score=41.28 Aligned_cols=100 Identities=12% Similarity=0.103 Sum_probs=59.9
Q ss_pred eEeeCCceeecccCCCccccchhcchhHHHHHHHHHhccCChhHHHHhHhhhhccCCcccccCCCCCCCchhhhHHHHHH
Q 007953 414 ILLSDSVTEITSSNRPKDVFFDWFFNPFLIIKEQIKAENLTEAEEDYLSKLVLFCGNIGRLKDLNVSPPESERKRAELGA 493 (583)
Q Consensus 414 lllsD~~~EiT~~NrPkd~~fDWff~PllviKeQIk~~~L~E~EE~yL~KlvL~~~d~~r~~d~~g~pp~d~~rrAqLqa 493 (583)
+++.|| ..++...--...+-+++-+.+.-+-..++.++++++|=.||+-++|++.|.... ...+.+.+.| +.
T Consensus 121 l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ld~~E~~lLkAivL~npd~~gL------~~~~~ve~lq-~~ 192 (264)
T 1g2n_A 121 MCLMPG-MTLHRNSALQAGVGQIFDRVLSELSLKMRTLRVDQAEYVALKAIILLNPDVKGL------KNRQEVEVLR-EK 192 (264)
T ss_dssp EEEETT-EEEEHHHHHHHTCHHHHHHHHHHTHHHHHHTTCCHHHHHHHHHHHHSCTTCTTC------SCHHHHHHHH-HH
T ss_pred eeecCC-cccCchhhhhccHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCC------ccHHHHHHHH-HH
Confidence 899999 776543211123344444667777789999999999999999999998764333 1122222222 11
Q ss_pred HHHHhhhhhhcccCCchhhhhHHHHHHHHH
Q 007953 494 LARRLQGITKSVSRYPTFRRQFDDLVKTLT 523 (583)
Q Consensus 494 i~RRLqGI~~s~SR~PT~RRrf~~lvK~L~ 523 (583)
+.+=|+-.++ .++|.-..||-+++..|.
T Consensus 193 ~~~aL~~y~~--~~~~~~~~Rf~~LL~~L~ 220 (264)
T 1g2n_A 193 MFLCLDEYCR--RSRSSEEGRFAALLLRLP 220 (264)
T ss_dssp HHHHHHHHHH--HHSTTCTTHHHHHHTHHH
T ss_pred HHHHHHHHHH--HhCCCHhhHHHHHHHHHH
Confidence 1122222222 346666778888775553
No 11
>3plz_A FTZ-F1 related protein; alpha helical sandwhich, family five, TRAN factor, transcription-receptor-agonist comple; HET: 470; 1.75A {Homo sapiens} SCOP: a.123.1.1 PDB: 1yok_A* 1yuc_A* 4dor_A* 1zdu_A* 4dos_A* 1zh7_A 1pk5_A 3f5c_A
Probab=86.13 E-value=2 Score=41.04 Aligned_cols=115 Identities=17% Similarity=0.206 Sum_probs=67.7
Q ss_pred HHHHHHHHhhhcC-CCceEeeCCceeecccCCC-cccc-chhcchhHHHHHHHHHhccCChhHHHHhHhhhhccCCcccc
Q 007953 398 CLLQALLRSAMAN-SPGILLSDSVTEITSSNRP-KDVF-FDWFFNPFLIIKEQIKAENLTEAEEDYLSKLVLFCGNIGRL 474 (583)
Q Consensus 398 slL~~LL~SaKan-S~GlllsD~~~EiT~~NrP-kd~~-fDWff~PllviKeQIk~~~L~E~EE~yL~KlvL~~~d~~r~ 474 (583)
.+|..--+|.+.+ ++.+++.|| .+++...-. .... +.=+.+.+.-+-..+++++++++|=.||+-++|++.|....
T Consensus 102 ~lL~~a~rs~~~~~~~~l~~~~g-~~~~~~~~~~~~g~~~~~~~~~l~~~~~~l~~L~ld~~E~~lLkAivL~npd~~gL 180 (257)
T 3plz_A 102 LILDHIYRQVVHGKEGSIFLVTG-QQVDYSIIASQAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNL 180 (257)
T ss_dssp HHHHHHHHHHHHCBTTEEECTTS-CEEEHHHHHTTSCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCTTCCSC
T ss_pred HHHHHHHHHhhcCCCCeEEecCC-CccChHHHhhhcCCcHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCC
Confidence 3444445677766 578888999 777543211 1111 01134667778899999999999999999999998765333
Q ss_pred cCCCCCCCchhhhHHHHHHHHHHhhhhhhcccCCchhhhhHHHHHHHH
Q 007953 475 KDLNVSPPESERKRAELGALARRLQGITKSVSRYPTFRRQFDDLVKTL 522 (583)
Q Consensus 475 ~d~~g~pp~d~~rrAqLqai~RRLqGI~~s~SR~PT~RRrf~~lvK~L 522 (583)
.....+.+.| +.+.+=|+--+. +++|.-..||-+++-.|
T Consensus 181 ------~~~~~ve~lq-~~~~~aL~~y~~--~~~p~~~~Rf~~LL~~L 219 (257)
T 3plz_A 181 ------ENFQLVEGVQ-EQVNAALLDYTM--CNYPQQTEKFGQLLLRL 219 (257)
T ss_dssp ------TTHHHHHHHH-HHHHHHHHHHHH--HHCTTSTTHHHHHHTHH
T ss_pred ------ccHHHHHHHH-HHHHHHHHHHHH--HhCCCchhHHHHHHHHh
Confidence 1122222222 111222222222 35677777888776544
No 12
>2e2r_A Estrogen-related receptor gamma; ERR gamma, BPA, nuclear receptor, transcription; HET: 2OH; 1.60A {Homo sapiens} SCOP: a.123.1.1 PDB: 2zas_A* 2zbs_A 2zkc_A* 2p7g_A* 1vjb_A* 1tfc_A 2p7a_A* 2p7z_A* 2gpu_A* 1kv6_A 2gp7_A 2gpp_A* 2gpo_A* 2gpv_A* 1s9q_A* 1s9p_A* 2ewp_A*
Probab=84.33 E-value=3.1 Score=39.19 Aligned_cols=112 Identities=16% Similarity=0.165 Sum_probs=65.9
Q ss_pred HHHHHHHhhhcCCCceEeeCCceeecccCCCccccchhcchhHHHHHHHHHhccCChhHHHHhHhhhhccCCcccccCCC
Q 007953 399 LLQALLRSAMANSPGILLSDSVTEITSSNRPKDVFFDWFFNPFLIIKEQIKAENLTEAEEDYLSKLVLFCGNIGRLKDLN 478 (583)
Q Consensus 399 lL~~LL~SaKanS~GlllsD~~~EiT~~NrPkd~~fDWff~PllviKeQIk~~~L~E~EE~yL~KlvL~~~d~~r~~d~~ 478 (583)
+|..--+|... ++++++.+| ..++....-...+.+ +++.+.-+-.+++.++++++|=.||+-++|++.|....
T Consensus 95 ~L~~a~rs~~~-~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~l~~~~~~l~~L~ld~~E~~lLkAivL~~pd~~gL---- 167 (244)
T 2e2r_A 95 ILGVVYRSLSF-EDELVYADD-YIMDEDQSKLAGLLD-LNNAILQLVKKYKSMKLEKEEFVTLKAIALANSDSMHI---- 167 (244)
T ss_dssp HHHHHHHTTTS-SSCEEEETT-EEECHHHHHHTTCHH-HHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHTCCCTTC----
T ss_pred HHHHHHHhccc-CCeEEecCC-EeecHHHhhhccHHH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCC----
Confidence 33444456655 567999999 655432111122333 45777788899999999999999999999998764332
Q ss_pred CCCCchhhhHHHHHHHHHHhhhhhhcccCCchhhhhHHHHHHHH
Q 007953 479 VSPPESERKRAELGALARRLQGITKSVSRYPTFRRQFDDLVKTL 522 (583)
Q Consensus 479 g~pp~d~~rrAqLqai~RRLqGI~~s~SR~PT~RRrf~~lvK~L 522 (583)
...+.+.+.| +.+.+=|+-.++ .++|.-..||-+++-.|
T Consensus 168 --~~~~~v~~lq-~~~~~aL~~y~~--~~~~~~~~Rf~~LL~~L 206 (244)
T 2e2r_A 168 --EDVEAVQKLQ-DVLHEALQDYEA--GQHMEDPRRAGKMLMTL 206 (244)
T ss_dssp --SCHHHHHHHH-HHHHHHHHHHHH--HHCTTCTTHHHHHHTTH
T ss_pred --cCHHHHHHHH-HHHHHHHHHHHH--hcCCCcccHHHHHHHHH
Confidence 1122222222 222233333332 24566666777766433
No 13
>1ymt_A Steroidogenic factor 1; SF-1, ligand-binding domain, ligand, phosphatidyl glycerol, CO-repressor peptide, transcription; HET: DR9; 1.20A {Mus musculus} PDB: 3f7d_A* 1yp0_A* 1yow_A* 1zdt_A*
Probab=83.75 E-value=3.6 Score=38.55 Aligned_cols=117 Identities=23% Similarity=0.236 Sum_probs=69.7
Q ss_pred HHHHHHHHHhhhc-CCCceEeeCCceeecccCCC--ccccchhcchhHHHHHHHHHhccCChhHHHHhHhhhhccCCccc
Q 007953 397 YCLLQALLRSAMA-NSPGILLSDSVTEITSSNRP--KDVFFDWFFNPFLIIKEQIKAENLTEAEEDYLSKLVLFCGNIGR 473 (583)
Q Consensus 397 yslL~~LL~SaKa-nS~GlllsD~~~EiT~~NrP--kd~~fDWff~PllviKeQIk~~~L~E~EE~yL~KlvL~~~d~~r 473 (583)
..+|..--+|.+. +++.+++.|| ..++...-. .+.-++=+.+++.-+-..++.++++++|=.||+-++|++.|...
T Consensus 90 l~~L~~a~rs~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ld~~E~~lLkAivL~~pd~~g 168 (246)
T 1ymt_A 90 LLVLDHIYRQVQYGKEDSILLVTG-QEVELSTVAVQAGSLLHSLVLRAQELVLQLHALQLDRQEFVCLKFLILFSLDVKF 168 (246)
T ss_dssp HHHHHHHHHHHHHCCTTEEECTTS-CEEEHHHHHHHCCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHTCSCGGG
T ss_pred HHHHHHHHHHhhcCCCCeeEecCC-CccchhhhhhhcchhHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccc
Confidence 3445555577776 4778888999 777542100 00001114456667788999999999999999999999876543
Q ss_pred ccCCCCCCCchhhhHHHHHHHHHHhhhhhhcccCCchhhhhHHHHHHHHH
Q 007953 474 LKDLNVSPPESERKRAELGALARRLQGITKSVSRYPTFRRQFDDLVKTLT 523 (583)
Q Consensus 474 ~~d~~g~pp~d~~rrAqLqai~RRLqGI~~s~SR~PT~RRrf~~lvK~L~ 523 (583)
.++ .+.+.+.| +.+.+=|+-.++ .++|.-..||-+++..|-
T Consensus 169 L~~------~~~v~~lq-~~~~~aL~~y~~--~~~~~~~~Rf~~LL~~L~ 209 (246)
T 1ymt_A 169 LNN------HSLVKDAQ-EKANAALLDYTL--SHYPHSGDKFQQLLLSLV 209 (246)
T ss_dssp SSC------HHHHHHHH-HHHHHHHHHHHH--HHCTTSTTHHHHHHHHHH
T ss_pred ccc------HHHHHHHH-HHHHHHHHHHHH--hcCCchhhHHHHHHHHhH
Confidence 311 12222222 112222333332 457777788888876554
No 14
>2ocf_A Estrogen receptor; estrogen receptor, LBD, monobody, estradiol, hormone-growth complex; HET: CME EST; 2.95A {Homo sapiens}
Probab=83.69 E-value=4.2 Score=40.01 Aligned_cols=121 Identities=12% Similarity=0.154 Sum_probs=68.4
Q ss_pred HHHHHHHHhhhcCCCceEeeCCceeecccCC-CccccchhcchhHHHHHHHHHhccCChhHHHHhHhhhhccCCcccccC
Q 007953 398 CLLQALLRSAMANSPGILLSDSVTEITSSNR-PKDVFFDWFFNPFLIIKEQIKAENLTEAEEDYLSKLVLFCGNIGRLKD 476 (583)
Q Consensus 398 slL~~LL~SaKanS~GlllsD~~~EiT~~Nr-Pkd~~fDWff~PllviKeQIk~~~L~E~EE~yL~KlvL~~~d~~r~~d 476 (583)
.+|..--+|.+. .+.+++.|| ..++.... -...+-++ ++.+.-+-.+++.++++++|=.||+-++|++.|.....+
T Consensus 90 ~lL~~a~rs~~~-~~~l~~~~g-~~~~~~~~~~~~g~~~~-~~~l~~~~~~l~~L~ld~~Ey~lLkAIvLfnpd~~~LS~ 166 (298)
T 2ocf_A 90 LMIGLVWRSMEH-PGKLLFAPN-LLLDRNQGKCVEGMVEI-FDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVYTFLS 166 (298)
T ss_dssp HHHHHHHHTTTS-TTEEEEETT-EEEEHHHHTTSTTHHHH-HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCC---
T ss_pred HHHHHHHHhccc-CCceeecCC-ceechhhhhhhhhHHHH-HHHHHHHHHhHhhhCcCHHHHHHHHHHHHcCCCcccccc
Confidence 444555566665 478999999 76654321 11223343 466666778999999999999999999999877533211
Q ss_pred C--CCCCCchhhhHHHHHHHHHHhhhhhhccc-CCchhhhhHHHHHHHH
Q 007953 477 L--NVSPPESERKRAELGALARRLQGITKSVS-RYPTFRRQFDDLVKTL 522 (583)
Q Consensus 477 ~--~g~pp~d~~rrAqLqai~RRLqGI~~s~S-R~PT~RRrf~~lvK~L 522 (583)
. .|....+.+.+.| +.+.+-|+-.++.-- ..|.-..||-+++..|
T Consensus 167 ~~~~gL~~~~~ve~lq-e~~~~aL~~y~~~~~~~~~~~~~RF~~LLl~L 214 (298)
T 2ocf_A 167 STLKSLEEKDHIHRVL-DKITDTLIHLMAKAGLTLQQQHQRLAQLLLIL 214 (298)
T ss_dssp --------CHHHHHHH-HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred ccccccccHHHHHHHH-HHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Confidence 1 2222223333332 233333433333211 2466667888776544
No 15
>1lbd_A RXR_LBD, retinoid X receptor; transcription factor, nuclear receptor, structural proteomic europe, spine, structural genomics; 2.70A {Homo sapiens} SCOP: a.123.1.1 PDB: 1z5x_U* 2q60_A
Probab=83.62 E-value=1.9 Score=41.22 Aligned_cols=115 Identities=18% Similarity=0.225 Sum_probs=68.6
Q ss_pred HHHHHHHHhhhcCCCceEeeCCceeecccCCCccccchhcchhHHHHHHHHHhccCChhHHHHhHhhhhccCCcccccCC
Q 007953 398 CLLQALLRSAMANSPGILLSDSVTEITSSNRPKDVFFDWFFNPFLIIKEQIKAENLTEAEEDYLSKLVLFCGNIGRLKDL 477 (583)
Q Consensus 398 slL~~LL~SaKanS~GlllsD~~~EiT~~NrPkd~~fDWff~PllviKeQIk~~~L~E~EE~yL~KlvL~~~d~~r~~d~ 477 (583)
.+|..--+|.+. .+++++.|| ..++...-....+-++|-..+.-+-..++.++++++|=.||+-++|++.|....
T Consensus 129 ~il~~a~rs~~~-~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ld~~E~~lLkaivL~~pd~~gL--- 203 (282)
T 1lbd_A 129 LIASFSHRSIAV-KDGILLATG-LHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGL--- 203 (282)
T ss_dssp HHHHHHHGGGGS-SSEEECTTS-CEEEHHHHHHTTTHHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHSCTTCTTC---
T ss_pred HHHHHHHhcccC-CCceEecCC-cccccchhhhcccHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHcCCCCCCC---
Confidence 344444456654 578999999 666543211222333433344456678999999999999999999998765333
Q ss_pred CCCCCchhhhHHHHHHHHHHhhhhhhcccCCchhhhhHHHHHHHHH
Q 007953 478 NVSPPESERKRAELGALARRLQGITKSVSRYPTFRRQFDDLVKTLT 523 (583)
Q Consensus 478 ~g~pp~d~~rrAqLqai~RRLqGI~~s~SR~PT~RRrf~~lvK~L~ 523 (583)
.....+++.| |.+.+-|+-.++ .++|.-..||-+++..|.
T Consensus 204 ---s~~~~v~~lq-~~~~~~L~~y~~--~~~~~~~~Rf~~LL~~L~ 243 (282)
T 1lbd_A 204 ---SNPAEVEALR-EKVYASLEAYCK--HKYPEQPGRFAKLLLRLP 243 (282)
T ss_dssp ---SCHHHHHHHH-HHHHHHHHHHHH--HHSCCSTTTHHHHHTTHH
T ss_pred ---CCHHHHHHHH-HHHHHHHHHHHH--HhCCCchhHHHHHHHHHH
Confidence 2222333222 222233444443 356777788888876554
No 16
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A*
Probab=81.39 E-value=2.9 Score=43.90 Aligned_cols=104 Identities=20% Similarity=0.302 Sum_probs=63.7
Q ss_pred cCCCceEeeCCceeecccCCCccccchhcchhHH-HHHHHHHhccCChhHHHHhHhhhhccCCcccccCCCCCCCchhhh
Q 007953 409 ANSPGILLSDSVTEITSSNRPKDVFFDWFFNPFL-IIKEQIKAENLTEAEEDYLSKLVLFCGNIGRLKDLNVSPPESERK 487 (583)
Q Consensus 409 anS~GlllsD~~~EiT~~NrPkd~~fDWff~Pll-viKeQIk~~~L~E~EE~yL~KlvL~~~d~~r~~d~~g~pp~d~~r 487 (583)
...+++++.|| ..++..+--...+-+ +++.++ -+-+.++++++|++|=.||+-++|++.|.....+ .+.+.
T Consensus 324 ~~~~~~ll~~g-~~i~~~~~~~~~~~~-~~~~il~~lv~~l~~L~ld~~E~~lLkAIvLfnpd~~gL~~------~~~Ve 395 (467)
T 3dzy_A 324 AVKDGILLATG-LHVHRNSAHSAGVGA-IFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSN------PAEVE 395 (467)
T ss_dssp SSTTBCCCSSS-CCCBTHHHHTTTCHH-HHHHHHHHTHHHHHHHTCCHHHHHHHHHHHHSCTTSTTCSC------HHHHH
T ss_pred cCCCceEecCC-ceechhhhhhhcchH-HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCC------HHHHH
Confidence 36688999999 666543322222222 233333 5667899999999999999999999987655411 12232
Q ss_pred HHHHHHHHHHhhhhhhcccCCchhhhhHHHHHHHHH
Q 007953 488 RAELGALARRLQGITKSVSRYPTFRRQFDDLVKTLT 523 (583)
Q Consensus 488 rAqLqai~RRLqGI~~s~SR~PT~RRrf~~lvK~L~ 523 (583)
+-| |.+.+=|+-.++ .++|....||-+++..|-
T Consensus 396 ~lQ-e~~~~aL~~Y~~--~~~p~~p~Rf~kLLl~Lp 428 (467)
T 3dzy_A 396 ALR-EKVYASLEAYCK--HKYPEQPGRFAKLLLRLP 428 (467)
T ss_dssp HHH-HHHHHHHHHHHH--HHCTTCTTHHHHHHTHHH
T ss_pred HHH-HHHHHHHHHHHH--hcCCChHHHHHHHHHHHH
Confidence 221 222223333332 367777889988876554
No 17
>3ipq_A Oxysterols receptor LXR-alpha; LXR homodimer, LXR signaling, alternative DNA-binding, metal-binding, nucleus, polymorphism, receptor transcription; HET: 965; 2.00A {Homo sapiens} PDB: 3ips_A* 3ipu_A* 3fc6_B* 3fal_B* 1uhl_B* 2acl_B* 1upv_A* 1upw_A* 1p8d_A* 1pq9_A* 1pq6_A* 1pqc_A* 3kfc_A* 4dk7_A* 4dk8_A* 3l0e_A*
Probab=80.84 E-value=4 Score=39.40 Aligned_cols=104 Identities=16% Similarity=0.207 Sum_probs=64.3
Q ss_pred cCCCceEeeCCceeecccCCCccccchhcchhHHHHHHHHHhccCChhHHHHhHhhhhccCCcccccCCCCCCCchhhhH
Q 007953 409 ANSPGILLSDSVTEITSSNRPKDVFFDWFFNPFLIIKEQIKAENLTEAEEDYLSKLVLFCGNIGRLKDLNVSPPESERKR 488 (583)
Q Consensus 409 anS~GlllsD~~~EiT~~NrPkd~~fDWff~PllviKeQIk~~~L~E~EE~yL~KlvL~~~d~~r~~d~~g~pp~d~~rr 488 (583)
.+.+.+++.|| ..++...-.+..+-.-+.+.+.-+-..++.++++++|=.||+-++|++.|.... -..+.+.+
T Consensus 144 ~~~~~~~~~~g-~~~~~~~~~~~g~~~~~~~~l~~~~~~l~~L~ld~~E~~lLkAIvL~npd~~gL------~~~~~ve~ 216 (283)
T 3ipq_A 144 PGSESITFLKD-FSYNREDFAKAGLQVEFINPIFEFSRAMNELQLNDAEFALLIAISIFSADRPNV------QDQLQVER 216 (283)
T ss_dssp TTTTEEEETTT-EEECHHHHHHTTCCHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHTCTTSTTC------SCHHHHHH
T ss_pred CCCCeEEeCCC-ceecHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCC------CcHHHHHH
Confidence 45577888898 766532211222323566788888899999999999999999999998775433 11122222
Q ss_pred HHHHHHHHHhhhhhhcccCCchhhhhHHHHHHHH
Q 007953 489 AELGALARRLQGITKSVSRYPTFRRQFDDLVKTL 522 (583)
Q Consensus 489 AqLqai~RRLqGI~~s~SR~PT~RRrf~~lvK~L 522 (583)
.| +.+.+=|+=.++ .++|.-..||-+++..|
T Consensus 217 lq-~~~~~aL~~y~~--~~~p~~~~Rf~~LL~~L 247 (283)
T 3ipq_A 217 LQ-HTYVEALHAYVS--IHHPHDRLMFPRMLMKL 247 (283)
T ss_dssp HH-HHHHHHHHHHHH--HHSTTCTTHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHH--HhCCChhhHHHHHHHHH
Confidence 22 112222222222 35677778888887654
No 18
>1ovl_A Orphan nuclear receptor NURR1 (MSe 414, 496, 511); NUUR1, LBD, transcription; 2.20A {Homo sapiens} SCOP: a.123.1.1
Probab=80.67 E-value=9.3 Score=36.31 Aligned_cols=114 Identities=9% Similarity=0.088 Sum_probs=68.0
Q ss_pred HHHHHHHHhhhcCCCceEeeCCceeecccCCCccccchhcchhHHHHHHHHHhccCChhHHHHhHhhhhccCCcccccCC
Q 007953 398 CLLQALLRSAMANSPGILLSDSVTEITSSNRPKDVFFDWFFNPFLIIKEQIKAENLTEAEEDYLSKLVLFCGNIGRLKDL 477 (583)
Q Consensus 398 slL~~LL~SaKanS~GlllsD~~~EiT~~NrPkd~~fDWff~PllviKeQIk~~~L~E~EE~yL~KlvL~~~d~~r~~d~ 477 (583)
.+|..--+|... .+.+++.|| ..++..+ ....+ .-+++++.-+-.+++.++++++|=.||+-++|++ | +.
T Consensus 120 ~~L~~a~~s~~~-~~~l~~~~g-~~~~~~~-~~~~~-~~~~~~l~~~~~~l~~L~ld~~E~~lLkAivL~~-~--~~--- 189 (271)
T 1ovl_A 120 FVLRLAYRSNPV-EGKLIFCNG-VVLHRLQ-CVRGF-GEWIDSIVEFSSNLQNMNIDISAFSCIAALAMVT-E--RH--- 189 (271)
T ss_dssp HHHHHHHHSBTT-TTEEECTTS-BEEEHHH-HTTTT-TTHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHSS-C--CT---
T ss_pred HHHHHHHHhcCC-CCeEEeeCC-eeecHHH-HHhhH-HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-C--CC---
Confidence 344444455554 468999999 6665432 11222 2356778888899999999999999999999996 3 21
Q ss_pred CCCCCchhhhHHHHHHHHHHhhhhhhcccCCchhhhhHHHHHHHHH
Q 007953 478 NVSPPESERKRAELGALARRLQGITKSVSRYPTFRRQFDDLVKTLT 523 (583)
Q Consensus 478 ~g~pp~d~~rrAqLqai~RRLqGI~~s~SR~PT~RRrf~~lvK~L~ 523 (583)
|....+.+.+.| +.+.+=|+--+..-...|.-..||-+++..|-
T Consensus 190 -gL~~~~~v~~lq-~~~~~aL~~y~~~~~~~~~~~~Rf~~LL~~L~ 233 (271)
T 1ovl_A 190 -GLKEPKRVEELQ-NKIVNCLKDHVTFNNGGLNRPNYLSKLLGKLP 233 (271)
T ss_dssp -TCSCHHHHHHHH-HHHHHHHHHHHHGGGTTTTSTTHHHHHHHHHH
T ss_pred -CCCcHHHHHHHH-HHHHHHHHHHHHhcCCCCccccHHHHHHHHHH
Confidence 222222333322 22233333334333345666778888876553
No 19
>1fcy_A RAR-gamma-1, retinoic acid receptor gamma-1; isotype selectivity, retinoid ligand complexes, drug design, antiparallel alpha-helical sandwich fold; HET: 564 LMU; 1.30A {Homo sapiens} SCOP: a.123.1.1 PDB: 1fcz_A* 1fcx_A* 1fd0_A* 1exa_A* 1exx_A* 1dkf_B*
Probab=80.36 E-value=2.6 Score=39.33 Aligned_cols=107 Identities=17% Similarity=0.256 Sum_probs=64.0
Q ss_pred HhhhcCCCceEeeCCceeecccCCCccccchhcchhHHHHHHHHHhccCChhHHHHhHhhhhccCCcccccCCCCCCCch
Q 007953 405 RSAMANSPGILLSDSVTEITSSNRPKDVFFDWFFNPFLIIKEQIKAENLTEAEEDYLSKLVLFCGNIGRLKDLNVSPPES 484 (583)
Q Consensus 405 ~SaKanS~GlllsD~~~EiT~~NrPkd~~fDWff~PllviKeQIk~~~L~E~EE~yL~KlvL~~~d~~r~~d~~g~pp~d 484 (583)
+|.. .++++++.|| ..++...-....+-+ +.+.+.-+-.+++.++++++|=.||+-++|++.|.... ....
T Consensus 97 ~~~~-~~~~l~~~~g-~~~~~~~~~~~g~~~-~~~~i~~~~~~l~~L~ld~~E~~lLkaivL~~pd~~gL------~~~~ 167 (236)
T 1fcy_A 97 RYTP-EQDTMTFSDG-LTLNRTQMHNAGFGP-LTDLVFAFAGQLLPLEMDDTETGLLSAICLICGDRMDL------EEPE 167 (236)
T ss_dssp TEET-TTTEEECTTC-BEEEHHHHHHHTTGG-GHHHHHHHHHHHGGGCCCHHHHHHHHHHHHSCTTSTTC------SCHH
T ss_pred Hhcc-CCCeEEeCCC-ceecHHHHHHcCcHH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCCC------CCHH
Confidence 3443 4578999999 766542111112223 45666667789999999999999999999998664332 1122
Q ss_pred hhhHHHHHHHHHHhhhhhhcccCCchhhhhHHHHHHHHH
Q 007953 485 ERKRAELGALARRLQGITKSVSRYPTFRRQFDDLVKTLT 523 (583)
Q Consensus 485 ~~rrAqLqai~RRLqGI~~s~SR~PT~RRrf~~lvK~L~ 523 (583)
.+.+.| +.+.+=|+--++ .++|.-..||-+++..|.
T Consensus 168 ~v~~lq-~~~~~aL~~y~~--~~~p~~~~Rf~~LL~~L~ 203 (236)
T 1fcy_A 168 KVDKLQ-EPLLEALRLYAR--RRRPSQPYMFPRMLMKIT 203 (236)
T ss_dssp HHHHHH-HHHHHHHHHHHH--HHCTTCTTHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHH--hhCCCchhHHHHHHHHhH
Confidence 232222 112222222222 356777788888876554
No 20
>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin, armadillo repeat, nuclear receptor LIGA binding domain, protein binding; HET: P6L; 2.76A {Homo sapiens}
Probab=80.15 E-value=3.4 Score=41.99 Aligned_cols=113 Identities=17% Similarity=0.226 Sum_probs=65.2
Q ss_pred HHHHHHhhhcC-CCceEeeCCceeecccCCC--ccccchhcchhHHHHHHHHHhccCChhHHHHhHhhhhccCCcccccC
Q 007953 400 LQALLRSAMAN-SPGILLSDSVTEITSSNRP--KDVFFDWFFNPFLIIKEQIKAENLTEAEEDYLSKLVLFCGNIGRLKD 476 (583)
Q Consensus 400 L~~LL~SaKan-S~GlllsD~~~EiT~~NrP--kd~~fDWff~PllviKeQIk~~~L~E~EE~yL~KlvL~~~d~~r~~d 476 (583)
|..--||.+.+ .+.+++.|| .++...+-. ...-++=+.+.+.-+-+.+++++++++|=.||+-++|++.|....++
T Consensus 199 L~~a~rs~~~~~~~~ll~~~G-~~i~~~~~~~~~g~~~~~l~~~l~~l~~~l~~L~ld~~EyalLkAIvLfnpd~~gLs~ 277 (352)
T 3tx7_B 199 LDHIYRQVVHGKEGSIFLVTG-QQVDYSIIASQAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLEN 277 (352)
T ss_dssp HHHHHHHHHTCCSSCCBCTTC-CBCCHHHHHHTSCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCSCC-----
T ss_pred HHHHHHHHhcCCCCeEEecCC-CcccHHHHHHhccccHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCch
Confidence 33334666765 467788888 666432111 01011234566777888999999999999999999999976544311
Q ss_pred CCCCCCchhhhHHHHHHHHHHhhhhhhcccCCchhhhhHHHHHHHH
Q 007953 477 LNVSPPESERKRAELGALARRLQGITKSVSRYPTFRRQFDDLVKTL 522 (583)
Q Consensus 477 ~~g~pp~d~~rrAqLqai~RRLqGI~~s~SR~PT~RRrf~~lvK~L 522 (583)
...+++.| +.+.+-|+--++ .++|.-..||-+++-.|
T Consensus 278 ------~~~Ve~lQ-e~~~~aL~~y~~--~~~p~~~~RF~kLLllL 314 (352)
T 3tx7_B 278 ------FQLVEGVQ-EQVNAALLDYTM--CNYPQQTEKFGQLLLRL 314 (352)
T ss_dssp -------CHHHHHH-HHHHHHHHHHHH--HHCTTCTTHHHHHHHHH
T ss_pred ------HHHHHHHH-HHHHHHHHHHHH--HhCCCccHHHHHHHHHH
Confidence 11222222 122222222222 35677777888887554
No 21
>1sqn_A PR, progesterone receptor; nuclear receptor, steroid receptor, norethindrone, birth control, hormone/growth factor receptior complex; HET: NDR; 1.45A {Homo sapiens} SCOP: a.123.1.1 PDB: 3g8o_A* 3g8n_A* 3d90_A* 1e3k_A* 1sr7_A* 1zuc_B* 3zr7_A* 2w8y_A* 3zra_A* 3zrb_A* 4a2j_A* 4apu_A* 1a28_A* 2ovh_A* 2ovm_A* 3hq5_A* 3kba_A*
Probab=79.62 E-value=12 Score=35.75 Aligned_cols=116 Identities=13% Similarity=0.128 Sum_probs=66.4
Q ss_pred HHHHHHHhhhcCCCc-eEeeCCceeecccCCCccccchhcchhHHHHHHHHHhccCChhHHHHhHhhhhccC-CcccccC
Q 007953 399 LLQALLRSAMANSPG-ILLSDSVTEITSSNRPKDVFFDWFFNPFLIIKEQIKAENLTEAEEDYLSKLVLFCG-NIGRLKD 476 (583)
Q Consensus 399 lL~~LL~SaKanS~G-lllsD~~~EiT~~NrPkd~~fDWff~PllviKeQIk~~~L~E~EE~yL~KlvL~~~-d~~r~~d 476 (583)
+|..--+|.+.+.+. +++.+| .-++..+--...+.+ +.+.+.-+-..+++++++++|=.||+-++|++. |....
T Consensus 88 ~L~~a~~s~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~-~~~~i~~~~~~l~~L~ld~~E~~lLkAIvLfnp~~~~gL-- 163 (261)
T 1sqn_A 88 VFGLGWRSYKHVSGQMLYFAPD-LILNEQRMKESSFYS-LCLTMWQIPQEFVKLQVSQEEFLCMKVLLLLNTIPLEGL-- 163 (261)
T ss_dssp HHHHHHHHHHHHTTSSEEEETT-EEECGGGCCSHHHHH-HHHHHHHHHHHHHHHTCCHHHHHHHHHHHHTSEECTTCC--
T ss_pred HHHHHHHhhhcCCCCeEEeCCC-cccchHhhhhhhHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCccccc--
Confidence 444445666654333 667888 655543322233444 346677778899999999999999999999987 33222
Q ss_pred CCCCCCchhhhHHHHHHHHHHhhhhhhcc-cCCchhhhhHHHHHHHHH
Q 007953 477 LNVSPPESERKRAELGALARRLQGITKSV-SRYPTFRRQFDDLVKTLT 523 (583)
Q Consensus 477 ~~g~pp~d~~rrAqLqai~RRLqGI~~s~-SR~PT~RRrf~~lvK~L~ 523 (583)
.....+.+-| +.+.+-|+--++.- ...|.-..||-+++..|.
T Consensus 164 ----~~~~~ve~lq-~~~~~aL~~y~~~~~~~~~~~~~Rf~~LL~~L~ 206 (261)
T 1sqn_A 164 ----RSQTQFEEMR-SSYIRELIKAIGLRQKGVVSSSQRFYQLTKLLD 206 (261)
T ss_dssp ----TTHHHHHHHH-HHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHH
T ss_pred ----ccHHHHHHHH-HHHHHHHHHHHHhhCCCCCchHHHHHHHHHHhH
Confidence 1122222222 22233333333321 135666778877766553
No 22
>3mnp_A Glucocorticoid receptor; protein-ligand complex, steroid nuclear receptor, mouse GR, hormone receptor; HET: DEX; 1.50A {Mus musculus} SCOP: a.123.1.1 PDB: 3mno_A* 3mne_A* 1m2z_A* 3k22_A* 3cld_A* 3k23_A* 3e7c_A* 1nhz_A* 1p93_A* 3bqd_A* 3h52_A* 3gn8_A* 4e2j_A*
Probab=78.37 E-value=6.1 Score=37.86 Aligned_cols=113 Identities=15% Similarity=0.116 Sum_probs=67.0
Q ss_pred HHHHHHHhhhcCCC-ceEeeCCceeecccCCCccccchhcchhHHHHHHHHHhccCChhHHHHhHhhhhccC-CcccccC
Q 007953 399 LLQALLRSAMANSP-GILLSDSVTEITSSNRPKDVFFDWFFNPFLIIKEQIKAENLTEAEEDYLSKLVLFCG-NIGRLKD 476 (583)
Q Consensus 399 lL~~LL~SaKanS~-GlllsD~~~EiT~~NrPkd~~fDWff~PllviKeQIk~~~L~E~EE~yL~KlvL~~~-d~~r~~d 476 (583)
+|..--||.+.+.+ -++..|| ..++...-....+.|+ ++++.-+-..+++++++++|=.||+-++|++. |....
T Consensus 89 iL~~a~rs~~~~~~~~l~~~~g-~~~~~~~~~~~~~~~~-~~~l~~~~~~l~~L~ld~~E~~lLkAIvL~np~d~~gL-- 164 (261)
T 3mnp_A 89 VFALGWRSYRQASGNLLCFAPD-LIINEQRMTLPCMYDQ-CKHMLFISTELQRLQVSYEEYLCMKTLLLLSSVPKEGL-- 164 (261)
T ss_dssp HHHHHHHHHHHHTTSSEEEETT-EEECHHHHTSTTTHHH-HHHHHHHHHHHHHHTCCHHHHHHHHHHHHTSEEETTCC--
T ss_pred HHHHHHHcccCCCCCEEEecCC-cccchhhhhhhhHHHH-HHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCcCCC--
Confidence 44444466666544 4778888 6665432222334453 46777788889999999999999999999987 43222
Q ss_pred CCCCCCchhhhHHHHHHHHHHhhhhhhcccCCch---hhhhHHHHHHHH
Q 007953 477 LNVSPPESERKRAELGALARRLQGITKSVSRYPT---FRRQFDDLVKTL 522 (583)
Q Consensus 477 ~~g~pp~d~~rrAqLqai~RRLqGI~~s~SR~PT---~RRrf~~lvK~L 522 (583)
.....+.+-| +.+.+=|+-.++ .++|. -..||-+++..|
T Consensus 165 ----~~~~~ve~lq-~~~~~aL~~y~~--~~~~~~~~~~~Rf~~LL~lL 206 (261)
T 3mnp_A 165 ----KSQELFDEIR-MTYIKELGKAIA--KRGGNSSQNWQRFYQLTKLL 206 (261)
T ss_dssp ----TTHHHHHHHH-HHHHHHHHHHHH--TTCCCHHHHHHHHHHHHHHH
T ss_pred ----ccHHHHHHHH-HHHHHHHHHHHH--hhCCCCchhhhHHHHHHHHH
Confidence 1122222222 222222333332 45664 367888877654
No 23
>1xpc_A Estrogen receptor; nuclear receptor, transcription factor, ER-alpha, antagonist hormone-growth factor receptor complex; HET: AIT; 1.60A {Homo sapiens} SCOP: a.123.1.1 PDB: 1sj0_A* 1xp1_A* 1xp9_A* 1xp6_A* 1yim_A* 1yin_A* 3ert_A* 1r5k_A* 3erd_A* 1l2i_A* 2iok_A* 1a52_A* 2ouz_A* 1ere_A* 1err_A* 2qxs_A* 3q95_A* 3q97_A* 2b1z_A* 1zky_A* ...
Probab=76.68 E-value=5.4 Score=37.43 Aligned_cols=72 Identities=14% Similarity=0.218 Sum_probs=50.1
Q ss_pred HHHHHHHHHhhhcCCCceEeeCCceeecccCCC-ccccchhcchhHHHHHHHHHhccCChhHHHHhHhhhhccCCc
Q 007953 397 YCLLQALLRSAMANSPGILLSDSVTEITSSNRP-KDVFFDWFFNPFLIIKEQIKAENLTEAEEDYLSKLVLFCGNI 471 (583)
Q Consensus 397 yslL~~LL~SaKanS~GlllsD~~~EiT~~NrP-kd~~fDWff~PllviKeQIk~~~L~E~EE~yL~KlvL~~~d~ 471 (583)
..+|..--+|.+.+ +.+++.|| ..++..... .+.+-++ ++.+.-+-..++.++++++|=.||+-++|++.|.
T Consensus 80 l~~L~~a~~s~~~~-~~l~~~~g-~~~~~~~~~~~~~~~~~-~~~l~~~~~~l~~L~ld~~E~~lLkAivL~~pd~ 152 (248)
T 1xpc_A 80 ILMIGLVWRSMEHP-GKLLFAPN-LLLDRNQGKCVEGMVEI-FDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGV 152 (248)
T ss_dssp HHHHHHHHHHTTST-TEEEEETT-EEEEHHHHTTSTTHHHH-HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhcccc-CceeecCC-ceeCccchhhhccHHHH-HHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCcc
Confidence 34555556677654 78899999 666543211 1223333 4566667789999999999999999999998775
No 24
>3kmr_A Retinoic acid receptor alpha; nuclear receptor transcription factor ligand binding domain, binding, metal-binding, nucleus, phosphoprotein; HET: EQN; 1.80A {Homo sapiens} PDB: 3kmz_B* 3a9e_B* 4dm6_A* 1xap_A* 4dm8_A* 2lbd_A* 3lbd_A* 4lbd_A*
Probab=76.39 E-value=4.7 Score=38.74 Aligned_cols=102 Identities=17% Similarity=0.276 Sum_probs=63.0
Q ss_pred CCCceEeeCCceeecccCCCccccchhcchhHHHHHHHHHhccCChhHHHHhHhhhhccCCcccccCCCCCCCchhhhHH
Q 007953 410 NSPGILLSDSVTEITSSNRPKDVFFDWFFNPFLIIKEQIKAENLTEAEEDYLSKLVLFCGNIGRLKDLNVSPPESERKRA 489 (583)
Q Consensus 410 nS~GlllsD~~~EiT~~NrPkd~~fDWff~PllviKeQIk~~~L~E~EE~yL~KlvL~~~d~~r~~d~~g~pp~d~~rrA 489 (583)
+.+.+++.|| ..++...-.+..+ .=+.+.+.-+-.+++.++++++|=.||+-++|++.|.... -....+.+.
T Consensus 125 ~~~~l~~~~g-~~~~~~~~~~~g~-~~~~~~i~~~~~~l~~L~ld~~E~~lLkAIvL~~pd~~gL------~~~~~ve~l 196 (266)
T 3kmr_A 125 EQDTMTFSDG-LTLNRTQMHNAGF-GPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDL------EQPDRVDML 196 (266)
T ss_dssp TTTEEECTTS-BEEEHHHHHHHTT-GGGHHHHHHHHHHHGGGCCCHHHHHHHHHHHHSCTTSTTC------SCHHHHHHH
T ss_pred CCCeEEecCC-cccchHHHhhcch-HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCC------CCHHHHHHH
Confidence 4578888999 6665422111112 2235666667789999999999999999999998765433 112223333
Q ss_pred HHHHHHHHhhhhhhcccCCchhhhhHHHHHHHH
Q 007953 490 ELGALARRLQGITKSVSRYPTFRRQFDDLVKTL 522 (583)
Q Consensus 490 qLqai~RRLqGI~~s~SR~PT~RRrf~~lvK~L 522 (583)
| +.+.+=|+--++ +++|.-..||-+++..|
T Consensus 197 q-~~~~~aL~~y~~--~~~p~~~~Rf~~LL~~L 226 (266)
T 3kmr_A 197 Q-EPLLEALKVYVR--KRRPSRPHMFPKMLMKI 226 (266)
T ss_dssp H-HHHHHHHHHHHH--HHCTTCTTHHHHHHHHH
T ss_pred H-HHHHHHHHHHHH--hhCCCcccHHHHHHHHh
Confidence 2 222233333333 25677788998887654
No 25
>3n00_A REV-ERBA-alpha; reverba ncorid1, anti-parallel B-sheet, transcription regula; 2.60A {Homo sapiens}
Probab=75.95 E-value=6 Score=37.65 Aligned_cols=103 Identities=16% Similarity=0.233 Sum_probs=52.2
Q ss_pred cCCCceEeeCCceeecccCCCccccchhcchhHHHHHHHHHhccCChhHHHHhHhhhhccCCcccccCCCCCCCchhhhH
Q 007953 409 ANSPGILLSDSVTEITSSNRPKDVFFDWFFNPFLIIKEQIKAENLTEAEEDYLSKLVLFCGNIGRLKDLNVSPPESERKR 488 (583)
Q Consensus 409 anS~GlllsD~~~EiT~~NrPkd~~fDWff~PllviKeQIk~~~L~E~EE~yL~KlvL~~~d~~r~~d~~g~pp~d~~rr 488 (583)
.+...+++.|| ..++..+-....+-+ +++++.-+-+.++.++++++|=.||+-++|++.|..... ....+.+
T Consensus 121 ~~~~~l~~~~g-~~~~~~~~~~~~~~~-~~~~i~~~~~~l~~L~ld~~E~~lLkAIvL~npd~~gL~------~~~~ve~ 192 (245)
T 3n00_A 121 VKDQTVMFLSR-TTYSLQELGAMGMGD-LLSAMFDFSEKLNSLALTEEELGLFTAVVLVSADRSGME------NSASVEQ 192 (245)
T ss_dssp SCC---------------CCGGGTTHH-HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTSCCTTCS------SHHHHHH
T ss_pred CCCCeEEecCC-CeecHHHHhhccHHH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCc------cHHHHHH
Confidence 34556777888 666543322222323 456777888899999999999999999999987654331 1122222
Q ss_pred HHHHHHHHHhhhhhhcccCCchhhhhHHHHHHHH
Q 007953 489 AELGALARRLQGITKSVSRYPTFRRQFDDLVKTL 522 (583)
Q Consensus 489 AqLqai~RRLqGI~~s~SR~PT~RRrf~~lvK~L 522 (583)
.| +.+.+=|+=-+. .++|.-..||-+++-.|
T Consensus 193 lq-~~~~~aL~~y~~--~~~p~~~~RF~~LLl~L 223 (245)
T 3n00_A 193 LQ-ETLLRALRALVL--KNRPLETSRFTKLLLKL 223 (245)
T ss_dssp HH-HHHHHHHHHHHH--HHCTTCTTHHHHHHTHH
T ss_pred HH-HHHHHHHHHHHH--HhCCCHHHHHHHHHHHh
Confidence 21 111222222222 35677677888877544
No 26
>3v3e_B Nuclear receptor subfamily 4 group A member 1; orphan nuclear receptor, transcription; 2.06A {Homo sapiens} PDB: 3v3q_A* 2qw4_A 1yje_A
Probab=75.82 E-value=6.3 Score=37.84 Aligned_cols=103 Identities=15% Similarity=0.145 Sum_probs=64.7
Q ss_pred cCCCceEeeCCceeecccCCCccccchhcchhHHHHHHHHHhccCChhHHHHhHhhhhccCCcccccCCCCCCCchhhhH
Q 007953 409 ANSPGILLSDSVTEITSSNRPKDVFFDWFFNPFLIIKEQIKAENLTEAEEDYLSKLVLFCGNIGRLKDLNVSPPESERKR 488 (583)
Q Consensus 409 anS~GlllsD~~~EiT~~NrPkd~~fDWff~PllviKeQIk~~~L~E~EE~yL~KlvL~~~d~~r~~d~~g~pp~d~~rr 488 (583)
.+.+.+++.+| .-+++.. ....+-| +++++.-+-+++++++++++|=.||+-+||++ |.... -....+.+
T Consensus 108 ~~~~~l~~~~~-~~~~~~~-~~~~~~~-~~~~l~~~~~~l~~L~ld~~E~a~LkAivLfs-d~~gL------~~~~~Ve~ 177 (257)
T 3v3e_B 108 PGEGKLIFCSG-LVLHRLQ-CARGFGD-WIDSILAFSRSLHSLLVDVPAFACLSALVLIT-DRHGL------QEPRRVEE 177 (257)
T ss_dssp GGGTEEECTTS-BEEEHHH-HHHHHTT-HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSS-CCTTC------SSHHHHHH
T ss_pred CCCCeeEeCCC-ccccHHH-HHhhhHH-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC-CCCCC------CCHHHHHH
Confidence 34566888888 5555432 1222333 46788888889999999999999999999995 33222 22334444
Q ss_pred HHHHHHHHHhhhhhhcccCCchhhhhHHHHHHHH
Q 007953 489 AELGALARRLQGITKSVSRYPTFRRQFDDLVKTL 522 (583)
Q Consensus 489 AqLqai~RRLqGI~~s~SR~PT~RRrf~~lvK~L 522 (583)
.|= .+..=|+--+++....|.-..||-.++-.|
T Consensus 178 lqe-~~~~aL~~yi~~~~~~p~~~~rf~kLL~~L 210 (257)
T 3v3e_B 178 LQN-RIASCLKEHVAAVAGEPQPASCLSRLLGKL 210 (257)
T ss_dssp HHH-HHHHHHHHHHHHHHCSCC-CHHHHHHHTHH
T ss_pred HHH-HHHHHHHHHHHHhcCCCcHhhHHHHHHHHH
Confidence 332 222334444555667888888998887554
No 27
>1t7r_A Androgen receptor; nuclear receptor, transcription factor, ligand binding domain, AF-2, androgen, testosterone, DHT, alpha-helical sandwich; HET: DHT; 1.40A {Pan troglodytes} SCOP: a.123.1.1 PDB: 1t73_A* 1t76_A* 1t74_A* 1t79_A* 1t7m_A* 1t7f_A* 1t7t_A* 2am9_A* 2ama_A* 2amb_A* 2pnu_A* 1e3g_A* 2q7i_A* 1xj7_A* 2q7j_A* 3g0w_A* 2ihq_A* 2nw4_A* 1i37_A* 2q7k_A* ...
Probab=74.71 E-value=10 Score=36.30 Aligned_cols=115 Identities=14% Similarity=0.093 Sum_probs=64.9
Q ss_pred HHHHHHhhhcCCC-ceEeeCCceeecccCCCccccchhcchhHHHHHHHHHhccCChhHHHHhHhhhhccC-CcccccCC
Q 007953 400 LQALLRSAMANSP-GILLSDSVTEITSSNRPKDVFFDWFFNPFLIIKEQIKAENLTEAEEDYLSKLVLFCG-NIGRLKDL 477 (583)
Q Consensus 400 L~~LL~SaKanS~-GlllsD~~~EiT~~NrPkd~~fDWff~PllviKeQIk~~~L~E~EE~yL~KlvL~~~-d~~r~~d~ 477 (583)
|..--||...+.+ -++..|| ..++..+-....+.+++ +.+.-+-.++++++++++|=.||+-++|++. |....
T Consensus 97 L~~a~rs~~~~~~~~l~~~~g-~~~~~~~~~~~~~~~~~-~~i~~~~~~l~~L~ld~~E~~lLkAIvLfnp~~~~gL--- 171 (269)
T 1t7r_A 97 FAMGWRSFTNVNSRMLYFAPD-LVFNEYRMHKSRMYSQC-VRMRHLSQEFGWLQITPQEFLCMKALLLFSIIPVDGL--- 171 (269)
T ss_dssp HHHHHHHHHHHTTSSEEEETT-EEECHHHHHHTTCHHHH-HHHHHHHHHHHHTTCCHHHHHHHHHHHHTSEEETTCC---
T ss_pred HHHHHHhcccCCCCeEEeCCC-ceecHHhhhhhhHHHHH-HHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCccCCC---
Confidence 3333356665433 4777888 65554322223344543 6677777899999999999999999999987 32222
Q ss_pred CCCCCchhhhHHHHHHHHHHhhhhhhcc-cCCchhhhhHHHHHHHHH
Q 007953 478 NVSPPESERKRAELGALARRLQGITKSV-SRYPTFRRQFDDLVKTLT 523 (583)
Q Consensus 478 ~g~pp~d~~rrAqLqai~RRLqGI~~s~-SR~PT~RRrf~~lvK~L~ 523 (583)
...+.+.+.| +.+.+-|+-.++.- ...|.-..||-+++..|-
T Consensus 172 ---~~~~~ve~lq-~~~~~aL~~y~~~~~~~~~~~~~Rf~~LL~~L~ 214 (269)
T 1t7r_A 172 ---KNQKFFDELR-MNYIKELDRIIACKRKNPTSCSRRFYQLTKLLD 214 (269)
T ss_dssp ---TTHHHHHHHH-HHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHH
T ss_pred ---ccHHHHHHHH-HHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHH
Confidence 1122222222 12233333333221 124566778888776543
No 28
>3cqv_A Nuclear receptor subfamily 1 group D member 2; reverb beta, heme, NR1D2, DNA-binding, metal-binding, nucleus, repressor, transcription; HET: HEM; 1.90A {Homo sapiens} PDB: 2v7c_A 2v0v_A
Probab=74.40 E-value=7.3 Score=35.33 Aligned_cols=104 Identities=15% Similarity=0.208 Sum_probs=62.1
Q ss_pred cCCCceEeeCCceeecccCCCccccchhcchhHHHHHHHHHhccCChhHHHHhHhhhhccCCcccccCCCCCCCchhhhH
Q 007953 409 ANSPGILLSDSVTEITSSNRPKDVFFDWFFNPFLIIKEQIKAENLTEAEEDYLSKLVLFCGNIGRLKDLNVSPPESERKR 488 (583)
Q Consensus 409 anS~GlllsD~~~EiT~~NrPkd~~fDWff~PllviKeQIk~~~L~E~EE~yL~KlvL~~~d~~r~~d~~g~pp~d~~rr 488 (583)
.+.+.+++.|| ..++...-....+-+ +++++.-+-..++.++++++|=.||+-++|++.|.... ...+.+.+
T Consensus 76 ~~~~~~~~~~g-~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~L~ld~~E~~lLkaivL~~pd~~gL------~~~~~v~~ 147 (199)
T 3cqv_A 76 AKERTVTFLSG-KKYSVDDLHSMGAGD-LLNSMFEFSEKLNALQLSDEEMSLFTAVVLVSADRSGI------ENVNSVEA 147 (199)
T ss_dssp TTTTEEECTTS-CEEEHHHHHHTTCCH-HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTSCCTTC------SCHHHHHH
T ss_pred CCCCeEEecCC-CeecHHHHHhcCcHH-HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCC------cCHHHHHH
Confidence 35566778888 666533211111222 45777788899999999999999999999998764333 11222222
Q ss_pred HHHHHHHHHhhhhhhcccCCchhhhhHHHHHHHHH
Q 007953 489 AELGALARRLQGITKSVSRYPTFRRQFDDLVKTLT 523 (583)
Q Consensus 489 AqLqai~RRLqGI~~s~SR~PT~RRrf~~lvK~L~ 523 (583)
-| +.+.+=|+--++ .++|.-..||-+++-.|.
T Consensus 148 ~q-~~~~~aL~~y~~--~~~~~~~~Rf~~LL~~L~ 179 (199)
T 3cqv_A 148 LQ-ETLIRALRTLIM--KNHPNEASIFTKLLLKLP 179 (199)
T ss_dssp HH-HHHHHHHHHHHH--HHCTTCTHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHH--HHCCChhhHHHHHHHHHH
Confidence 22 112222222332 346777778887776553
No 29
>1xdk_B RAR-beta, retinoic acid receptor, beta; nuclear receptor, coactivator, ligand, hormone/growth factor receptor complex; HET: REA; 2.90A {Mus musculus} SCOP: a.123.1.1
Probab=73.10 E-value=4.1 Score=39.78 Aligned_cols=106 Identities=16% Similarity=0.260 Sum_probs=62.8
Q ss_pred HHhhhcCCCceEeeCCceeecccCCCccccchhcchhHHHHHHHHHhccCChhHHHHhHhhhhccCCcccccCCCCCCCc
Q 007953 404 LRSAMANSPGILLSDSVTEITSSNRPKDVFFDWFFNPFLIIKEQIKAENLTEAEEDYLSKLVLFCGNIGRLKDLNVSPPE 483 (583)
Q Consensus 404 L~SaKanS~GlllsD~~~EiT~~NrPkd~~fDWff~PllviKeQIk~~~L~E~EE~yL~KlvL~~~d~~r~~d~~g~pp~ 483 (583)
-+|.+ .++.+++.|| ..++...-....+-+ +++++.-+-.+++.++++++|=.||+-++|++.|.... ...
T Consensus 123 ~~s~~-~~~~l~~~~g-~~~~~~~~~~~g~~~-~~~~i~~~~~~l~~L~ld~~E~~lLkAivL~~pd~~gL------~~~ 193 (303)
T 1xdk_B 123 TRYTP-EQDTMTFSDG-LTLNRTQMHNAGFGP-LTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDL------EEP 193 (303)
T ss_dssp TTEET-TTTEEECTTC-BEEEHHHHHHTTTGG-GHHHHHHHHHHHGGGCCCHHHHHHHHHHHHSCSCSSSC------SSH
T ss_pred HHhcc-cCCeEEecCC-ceecHHHHhhcCcHH-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCC------ccH
Confidence 34444 3578899999 766543211122223 45677778899999999999999999999998764333 112
Q ss_pred hhhhHHHHHHHHHHhhhhhhcccCCchhhhhHHHHHHH
Q 007953 484 SERKRAELGALARRLQGITKSVSRYPTFRRQFDDLVKT 521 (583)
Q Consensus 484 d~~rrAqLqai~RRLqGI~~s~SR~PT~RRrf~~lvK~ 521 (583)
..+.+.| +.+.+=|+-.++ .++|.-..||-+++..
T Consensus 194 ~~ve~lq-~~~~~aL~~y~~--~~~p~~~~Rf~~LL~~ 228 (303)
T 1xdk_B 194 TKVDKLQ-EPLLEALKIYIR--KRRPSKPHMFPKILMK 228 (303)
T ss_dssp HHHHHHT-HHHHHHHHHHHH--HHCTTCTTHHHHHHTH
T ss_pred HHHHHHH-HHHHHHHHHHHH--HhCCCcccHHHHHHHH
Confidence 2222222 111222222222 3467777788877643
No 30
>1xvp_B Orphan nuclear receptor NR1I3; CAR, RXR, citco, SRC1, DNA binding protein; HET: F15 CID; 2.60A {Homo sapiens} SCOP: a.123.1.1 PDB: 1xv9_B* 1xnx_A* 1xls_E*
Probab=71.52 E-value=14 Score=34.47 Aligned_cols=80 Identities=21% Similarity=0.288 Sum_probs=52.8
Q ss_pred cchhHHHHHHHHHhccCChhHHHHhHhhhhccCCcccccCCCCCCCchhhhHHHHHHHHHHhhhhhhcccCCchhhhhHH
Q 007953 437 FFNPFLIIKEQIKAENLTEAEEDYLSKLVLFCGNIGRLKDLNVSPPESERKRAELGALARRLQGITKSVSRYPTFRRQFD 516 (583)
Q Consensus 437 ff~PllviKeQIk~~~L~E~EE~yL~KlvL~~~d~~r~~d~~g~pp~d~~rrAqLqai~RRLqGI~~s~SR~PT~RRrf~ 516 (583)
+.+.+.-+-.+++.++++++|=.||+-++|++.|.... .....+.+.| +.+.+=|+-.++.-.+.|.-+.||-
T Consensus 136 ~~~~i~~~~~~l~~L~ld~~E~~lLkAivL~~pd~~gL------~~~~~v~~lq-~~~~~aL~~y~~~~~~~~~~~~rf~ 208 (246)
T 1xvp_B 136 FLELLFHFHGTLRKLQLQEPEYVLLAAMALFSPDRPGV------TQRDEIDQLQ-EEMALTLQSYIKGQQRRPRDRFLYA 208 (246)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHSCSSSTTC------SCHHHHHHHH-HHHHHHHHHHHHTCSSCCSCSSHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCCC------CCHHHHHHHH-HHHHHHHHHHHHhhCCCCCchhHHH
Confidence 34566666788999999999999999999998764333 1122232222 2233334444554456788888999
Q ss_pred HHHHHHH
Q 007953 517 DLVKTLT 523 (583)
Q Consensus 517 ~lvK~L~ 523 (583)
+++..|-
T Consensus 209 ~LL~~L~ 215 (246)
T 1xvp_B 209 KLLGLLA 215 (246)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887654
No 31
>3ilz_A Thyroid hormone receptor, alpha isoform 1 variant; nuclear receptor, signaling protein; HET: B72; 1.85A {Homo sapiens} SCOP: a.123.1.1 PDB: 3jzb_A* 3hzf_A* 2h79_A* 2h77_A* 1nav_A* 3uvv_A* 1xzx_X* 1y0x_X* 1nq1_A* 3jzc_A* 1nuo_A* 3imy_A* 1nq0_A* 1bsx_A* 1r6g_A* 1nq2_A* 3gws_X* 1n46_A* 2h6w_X* 2j4a_A* ...
Probab=68.55 E-value=8.3 Score=36.89 Aligned_cols=102 Identities=13% Similarity=0.153 Sum_probs=61.7
Q ss_pred CCCceEeeCCceeecccCCCccccchhcchhHHHHHHHHHhccCChhHHHHhHhhhhccCCcccccCCCCCCCchhhhHH
Q 007953 410 NSPGILLSDSVTEITSSNRPKDVFFDWFFNPFLIIKEQIKAENLTEAEEDYLSKLVLFCGNIGRLKDLNVSPPESERKRA 489 (583)
Q Consensus 410 nS~GlllsD~~~EiT~~NrPkd~~fDWff~PllviKeQIk~~~L~E~EE~yL~KlvL~~~d~~r~~d~~g~pp~d~~rrA 489 (583)
+++.+++.|| ..++...-....+-+ +.+.+.-+-..+++++++++|=.||+-++|++.|.... -....+.+.
T Consensus 127 ~~~~l~~~~g-~~~~~~~~~~~~~~~-~~~~i~~~~~~l~~L~ld~~E~~lLkAivL~~pd~~gL------~~~~~ve~l 198 (267)
T 3ilz_A 127 ESDTLTLSGE-MAVKREQLKNGGLGV-VSDAIFELGKSLSAFNLDDTEVALLQAVLLMSTDRSGL------LXVDKIEKS 198 (267)
T ss_dssp TTTBEEETTT-EEECHHHHHHTTTTH-HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHSCCCSSSC------SCHHHHHHH
T ss_pred CCCEEEecCC-eeecHHHHhccCHHH-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCC------chHHHHHHH
Confidence 4567888898 766643211111122 45566667789999999999999999999998775333 112223332
Q ss_pred HHHHHHHHhhhhhhcccCCchhhhhHHHHHHHH
Q 007953 490 ELGALARRLQGITKSVSRYPTFRRQFDDLVKTL 522 (583)
Q Consensus 490 qLqai~RRLqGI~~s~SR~PT~RRrf~~lvK~L 522 (583)
| +.+.+=|+-.+. .++|.-..||-+++..|
T Consensus 199 q-~~~~~aL~~y~~--~~~~~~~~Rf~~LL~~L 228 (267)
T 3ilz_A 199 Q-EAYLLAFEHYVN--HRKHNIPHFWPKLLMKV 228 (267)
T ss_dssp H-HHHHHHHHHHHH--HHTCSSTTHHHHHHHHH
T ss_pred H-HHHHHHHHHHHH--HhCCChhhHHHHHHHHh
Confidence 2 122222332232 35677778888887644
No 32
>2r40_D Ecdysone receptor, 20-hydroxy-ecdysone receptor; nuclear receptor ligand-binding domain, anti-parallel alpha- sandwich, ecdysone receptor, ECR, gene regulation; HET: FLC 20E EPH; 2.40A {Heliothis virescens} SCOP: a.123.1.1 PDB: 1r1k_D* 3ixp_D* 1r20_D*
Probab=67.32 E-value=6.5 Score=37.63 Aligned_cols=103 Identities=15% Similarity=0.154 Sum_probs=60.8
Q ss_pred cCCCceEeeCCceeecccCCCccccchhcchhHHHHHHHHHhccCChhHHHHhHhhhhccCCcccccCCCCCCCchhhhH
Q 007953 409 ANSPGILLSDSVTEITSSNRPKDVFFDWFFNPFLIIKEQIKAENLTEAEEDYLSKLVLFCGNIGRLKDLNVSPPESERKR 488 (583)
Q Consensus 409 anS~GlllsD~~~EiT~~NrPkd~~fDWff~PllviKeQIk~~~L~E~EE~yL~KlvL~~~d~~r~~d~~g~pp~d~~rr 488 (583)
..++.+++.|| ..++...-....+-+ +.+.+.-+-.+++.++++++|=.||+-++|++ |.... .....+.+
T Consensus 124 ~~~~~l~~~~g-~~~~~~~~~~~g~~~-~~~~l~~~~~~l~~L~ld~~E~~lLkAivL~n-d~~gL------~~~~~v~~ 194 (266)
T 2r40_D 124 AATDSVLFANN-QAYTRDNYRKAGMAY-VIEDLLHFCRCMYSMMMDNVHYALLTAIVIFS-DRPGL------EQPLLVEE 194 (266)
T ss_dssp TTTTEEECTTS-CEECHHHHHHTTCHH-HHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTS-CCTTC------SCHHHHHH
T ss_pred CCCCeEEecCC-ceecHHHHhhcCHHH-HHHHHHHHHHHHhcccCCHHHHHHHhhheeec-CCCCC------cCHHHHHH
Confidence 45677899999 766432111112223 45777777789999999999999999999998 43222 11122222
Q ss_pred HHHHHHHHHhhhhhhcccCC---chhhhhHHHHHHHHH
Q 007953 489 AELGALARRLQGITKSVSRY---PTFRRQFDDLVKTLT 523 (583)
Q Consensus 489 AqLqai~RRLqGI~~s~SR~---PT~RRrf~~lvK~L~ 523 (583)
.| +.+.+=|+-.++ .++ |.-..||-+++..|-
T Consensus 195 lq-~~~~~aL~~y~~--~~~~~~~~~~~Rf~~LL~~L~ 229 (266)
T 2r40_D 195 IQ-RYYLNTLRVYIL--NQNSASPRCAVIFGKILGILT 229 (266)
T ss_dssp HH-HHHHHHHHHHHH--HHTTTCTTHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHH--HhCCCCCchhhHHHHHHHHHH
Confidence 21 112222222222 234 777788888876554
No 33
>3vhv_A Mineralocorticoid receptor; nuclear receptor, transcription factor, activating mutation, hypertension, non-steroidal antagonist; HET: LD1 LD2; 1.35A {Homo sapiens} SCOP: a.123.1.1 PDB: 2aax_A* 2aa6_A* 2ab2_A* 2aa2_A* 2aa5_A* 2aa7_A* 2a3i_A* 1y9r_A* 1ya3_A* 2oax_A* 2abi_A* 2q1h_A* 2q1v_A* 2q3y_A* 3ry9_A* 4fne_A* 4fn9_A*
Probab=67.20 E-value=14 Score=35.25 Aligned_cols=69 Identities=14% Similarity=0.113 Sum_probs=47.2
Q ss_pred HHHHHHHhhhcC-CCceEeeCCceeecccCCCccccchhcchhHHHHHHHHHhccCChhHHHHhHhhhhccC
Q 007953 399 LLQALLRSAMAN-SPGILLSDSVTEITSSNRPKDVFFDWFFNPFLIIKEQIKAENLTEAEEDYLSKLVLFCG 469 (583)
Q Consensus 399 lL~~LL~SaKan-S~GlllsD~~~EiT~~NrPkd~~fDWff~PllviKeQIk~~~L~E~EE~yL~KlvL~~~ 469 (583)
+|..--+|.+.+ ++.++..|| ..++...--...+.| +.+.+.-+-+.+++++++++|=.||+-++|++.
T Consensus 87 ~L~~a~rs~~~~~~~~l~~~~g-~~~~~~~~~~~~~~~-~~~~l~~~~~~l~~L~ld~~E~~lLkAIvLfnp 156 (260)
T 3vhv_A 87 SFALSWRSYKHTNSQFLYFAPD-LVFNEEKMHQSAMYE-LCQGMHQISLQFVRLQLTFEEYTIMKVLLLLST 156 (260)
T ss_dssp HHHHHHHHHHHHTTSSEEEETT-EEECHHHHHHTTCHH-HHHHHHHHHHHHHHHTCCHHHHHHHHHHHHTSE
T ss_pred HHHHHHHhhccCCCCeEEecCC-ccccHHHhhcccHHH-HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCC
Confidence 344444666654 467888999 666532211112333 356676778899999999999999999999987
No 34
>2nxx_E Ecdysone receptor (ECR, NRH1); hormone receptor, APO and holo ligand binding pocket, hormone/growth factor complex; HET: P1A; 2.75A {Tribolium castaneum}
Probab=65.40 E-value=21 Score=33.59 Aligned_cols=103 Identities=16% Similarity=0.194 Sum_probs=60.4
Q ss_pred cCCCceEeeCCceeecccCCCccccchhcchhHHHHHHHHHhccCChhHHHHhHhhhhccCCcccccCCCCCCCchhhhH
Q 007953 409 ANSPGILLSDSVTEITSSNRPKDVFFDWFFNPFLIIKEQIKAENLTEAEEDYLSKLVLFCGNIGRLKDLNVSPPESERKR 488 (583)
Q Consensus 409 anS~GlllsD~~~EiT~~NrPkd~~fDWff~PllviKeQIk~~~L~E~EE~yL~KlvL~~~d~~r~~d~~g~pp~d~~rr 488 (583)
.+++.+++.|| ..++...-....+-+ +.+.+.-+-..++.++++++|=.||+-++|++ | +. |....+.+.+
T Consensus 108 ~~~~~~~~~~g-~~~~~~~~~~~~~~~-~~~~i~~~~~~l~~L~ld~~E~~lLkAivL~~-d--~~----gL~~~~~v~~ 178 (248)
T 2nxx_E 108 VQTDSILFVNN-QPYSRDSYNLAGMGE-TIEDLLHFCRTMYSMRVDNAEYALLTAIVIFS-E--RP----ALIEGWKVEK 178 (248)
T ss_dssp TTTTEEECTTS-CEECHHHHHHTTCHH-HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHTC-C--CS----SCTTHHHHHH
T ss_pred CCCCeEEecCC-ceecHHHHHhcchHH-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHcC-C--CC----CCCCHHHHHH
Confidence 46778899998 666432111112222 45677777889999999999999999999985 3 21 1211222222
Q ss_pred HHHHHHHHHhhhhhhcccCC-chhhhhHHHHHHHHH
Q 007953 489 AELGALARRLQGITKSVSRY-PTFRRQFDDLVKTLT 523 (583)
Q Consensus 489 AqLqai~RRLqGI~~s~SR~-PT~RRrf~~lvK~L~ 523 (583)
.| +.+.+=|+--++ +++ |.-..||-+++..|-
T Consensus 179 lq-~~~~~aL~~y~~--~~~~~~~~~Rf~~LL~~L~ 211 (248)
T 2nxx_E 179 IQ-EIYLEALRAYVD--NRRKPKPGTIFAKLLSVLT 211 (248)
T ss_dssp HH-HHHHHHHHHHHH--HSCCSSHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHH--HhCCCchhhHHHHHHHHHH
Confidence 22 112222333332 334 457788988877654
No 35
>1z5x_E Ecdysone receptor ligand binding domain; ponasterone A, nuclear receptor, ECR, USP, hormone/growth factor receptor complex; HET: P1A; 3.07A {Bemisia tabaci}
Probab=64.37 E-value=18 Score=35.75 Aligned_cols=102 Identities=18% Similarity=0.194 Sum_probs=60.2
Q ss_pred CCCceEeeCCceeecccCCCccccchhcchhHHHHHHHHHhccCChhHHHHhHhhhhccCCcccccCCCCCCCchhhhHH
Q 007953 410 NSPGILLSDSVTEITSSNRPKDVFFDWFFNPFLIIKEQIKAENLTEAEEDYLSKLVLFCGNIGRLKDLNVSPPESERKRA 489 (583)
Q Consensus 410 nS~GlllsD~~~EiT~~NrPkd~~fDWff~PllviKeQIk~~~L~E~EE~yL~KlvL~~~d~~r~~d~~g~pp~d~~rrA 489 (583)
+++.+++.|| ..++...-....+- -+++.+.-+-..++.++++++|=.||+-++|++ |.... ...+.+.+.
T Consensus 173 ~~~~l~~~~g-~~~~~~~~~~~g~~-~~~~~i~~~~~~l~~L~ld~~E~alLkAIvLf~-d~~gL------~~~~~Ve~l 243 (310)
T 1z5x_E 173 ETDSILFATN-QPYTRESYTVAGMG-DTVEDLLRFCRHMCAMKVDNAEYALLTAIVIFS-ERPSL------SEGWKVEKI 243 (310)
T ss_dssp TTTEEECTTS-CEECHHHHHHTTTH-HHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHTC-CCTTC------TTHHHHHHH
T ss_pred CCCeEEeCCC-ccccHHHHHhcchh-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcC-CCCCC------ccHHHHHHH
Confidence 5778999999 65543211111222 245666667789999999999999999999985 32112 112222222
Q ss_pred HHHHHHHHhhhhhhcccCC-chhhhhHHHHHHHHH
Q 007953 490 ELGALARRLQGITKSVSRY-PTFRRQFDDLVKTLT 523 (583)
Q Consensus 490 qLqai~RRLqGI~~s~SR~-PT~RRrf~~lvK~L~ 523 (583)
| +.+.+=|+-.++ .++ |.-..||-+++..|-
T Consensus 244 q-e~~~~aL~~y~~--~~~~~~~~~RF~kLLl~Lp 275 (310)
T 1z5x_E 244 Q-EIYIEALKAYVE--NRRKPYATTIFAKLLSVLT 275 (310)
T ss_dssp H-HHHHHHHHHHHH--TTTCTTHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHH--HHCCCcHHHHHHHHHHHHH
Confidence 2 122222333332 233 667889998886654
No 36
>3cjw_A COUP transcription factor 2; COUP-TFII, nuclear receptor, ligand binding domain, orphan receptor, three-layered helical sandwich, DNA-binding; 1.48A {Homo sapiens}
Probab=63.46 E-value=28 Score=32.39 Aligned_cols=111 Identities=22% Similarity=0.282 Sum_probs=54.7
Q ss_pred HHHHHHHhhhcCCCceEeeCCceeecccCCCccccchhcchhHHHH---HHHHHhccCChhHHHHhHhhhhccCCccccc
Q 007953 399 LLQALLRSAMANSPGILLSDSVTEITSSNRPKDVFFDWFFNPFLII---KEQIKAENLTEAEEDYLSKLVLFCGNIGRLK 475 (583)
Q Consensus 399 lL~~LL~SaKanS~GlllsD~~~EiT~~NrPkd~~fDWff~Pllvi---KeQIk~~~L~E~EE~yL~KlvL~~~d~~r~~ 475 (583)
+|..--+|.+.+..-++..|| ......+ .+++.. |++++-.+ -..++.++++++|=.||+-++|++.|....
T Consensus 84 ~L~~a~~s~~~~~~~~l~~~g-~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~L~ld~~E~~lLkaivL~~pd~~gL- 158 (244)
T 3cjw_A 84 VLNAAQCSMPLHVAPLLAAAG-LHASPMS--ADRVVA-FMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGL- 158 (244)
T ss_dssp HHHHHHHTCCCSCCC--------------------CC-CSHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCTTSTTC-
T ss_pred HHHHHHHhccccccccccccc-cccCccc--hhhhHH-HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCC-
Confidence 334444566666555666666 4322111 233322 22333333 457899999999999999999998765333
Q ss_pred CCCCCCCchhhhHHHHHHHHHHhhhhhhcccCCchhhhhHHHHHHHH
Q 007953 476 DLNVSPPESERKRAELGALARRLQGITKSVSRYPTFRRQFDDLVKTL 522 (583)
Q Consensus 476 d~~g~pp~d~~rrAqLqai~RRLqGI~~s~SR~PT~RRrf~~lvK~L 522 (583)
.....+.+.| +.+.+=|+-.++ .++|.-..||-+++..|
T Consensus 159 -----~~~~~ve~lq-~~~~~aL~~y~~--~~~~~~~~Rf~~LLl~L 197 (244)
T 3cjw_A 159 -----SDVAHVESLQ-EKSQCALEEYVR--SQYPNQPTRFGKLLLRL 197 (244)
T ss_dssp -----SCHHHHHHHH-HHHHHHHHHHHH--HHCTTCTTHHHHHHTTH
T ss_pred -----CCHHHHHHHH-HHHHHHHHHHHH--HhCCChhhHHHHHHHHh
Confidence 1122333322 222333333333 35677778888887544
No 37
>3vhu_A Mineralocorticoid receptor; nuclear receptor, transcription factor, activating mutation, hypertension, antagonist, spironolactone; HET: SNL; 2.11A {Homo sapiens}
Probab=63.27 E-value=23 Score=34.86 Aligned_cols=113 Identities=14% Similarity=0.119 Sum_probs=61.6
Q ss_pred HHHHHHHhhhcC-CCceEeeCCceeecccCCCccccchhcchhHHHHHHHHHhccCChhHHHHhHhhhhccC-CcccccC
Q 007953 399 LLQALLRSAMAN-SPGILLSDSVTEITSSNRPKDVFFDWFFNPFLIIKEQIKAENLTEAEEDYLSKLVLFCG-NIGRLKD 476 (583)
Q Consensus 399 lL~~LL~SaKan-S~GlllsD~~~EiT~~NrPkd~~fDWff~PllviKeQIk~~~L~E~EE~yL~KlvL~~~-d~~r~~d 476 (583)
+|..--+|.+.+ ++.+++.|| ..++...-....+.| +.+.+.-+-+.+++++++++|=.||+-++|++. |....
T Consensus 121 lL~~a~rS~~~~~~~~l~~~~g-~~~~~~~~~~~~~~~-~~~~l~~~~~~l~~L~ld~~EyalLkAIvLfnp~d~~gL-- 196 (294)
T 3vhu_A 121 SFALSWRSYKHTNSQFLYFAPD-LVFNEEKMHQSAMYE-LCQGMHQISLQFVRLQLTFEEYTIMKVLLLLSTIPKDGL-- 196 (294)
T ss_dssp HHHHHHHHHHHHTTSSEEEETT-EEECHHHHHHTTCHH-HHHHHHHHHHHHHHHTCCHHHHHHHHHHHHTSEEETTCC--
T ss_pred HHHHHHHhhhcCCCCeEEeCCC-ccccHHHhhcccHHH-HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCC--
Confidence 344444566653 457888999 666432111112233 345666677889999999999999999999987 43222
Q ss_pred CCCCCCchhhhHHHHHHHHHHhhhhhhcccCCchh---hhhHHHHHHHH
Q 007953 477 LNVSPPESERKRAELGALARRLQGITKSVSRYPTF---RRQFDDLVKTL 522 (583)
Q Consensus 477 ~~g~pp~d~~rrAqLqai~RRLqGI~~s~SR~PT~---RRrf~~lvK~L 522 (583)
-....+.+.| +.+.+=|+=.++. +.|.- ..||-+++..|
T Consensus 197 ----~~~~~Ve~lQ-e~~~~aL~~y~~~--~~~~~~~~~~RF~~LL~lL 238 (294)
T 3vhu_A 197 ----KSQAAFEEMR-TNYIKELRKMVTK--CPNNSGQSWQRFYQLTKLL 238 (294)
T ss_dssp ----TTHHHHHHHH-HHHHHHHHHHHC--------CHHHHHHHHHHHHH
T ss_pred ----CcHHHHHHHH-HHHHHHHHHHHHh--cCCCCccHhHHHHHHHHHH
Confidence 1122233322 2222333333332 34443 56888877654
No 38
>3u9q_A Peroxisome proliferator-activated receptor gamma; nuclear receptor, adipogenesis, RXRA, nucleus, transcription; HET: DKA; 1.52A {Homo sapiens} SCOP: a.123.1.1 PDB: 1i7i_A* 3ty0_A* 1zeo_A* 2p4y_A* 3et3_A* 3et0_A* 2hwq_A* 2ath_A* 2f4b_A* 2g0g_A* 2g0h_A* 2gtk_A* 2fvj_A* 2hwr_A* 2prg_A* 2q8s_A* 3fej_A* 3g9e_A* 3gbk_A* 3ia6_A* ...
Probab=61.32 E-value=17 Score=34.99 Aligned_cols=105 Identities=19% Similarity=0.280 Sum_probs=61.6
Q ss_pred cCCCceEeeCCceeeccc--CCCccccchhcchhHHHHHHHHHhccCChhHHHHhHhhhhccCCcccccCCCCCCCchhh
Q 007953 409 ANSPGILLSDSVTEITSS--NRPKDVFFDWFFNPFLIIKEQIKAENLTEAEEDYLSKLVLFCGNIGRLKDLNVSPPESER 486 (583)
Q Consensus 409 anS~GlllsD~~~EiT~~--NrPkd~~fDWff~PllviKeQIk~~~L~E~EE~yL~KlvL~~~d~~r~~d~~g~pp~d~~ 486 (583)
.+.+++++.+|..-++.. ....+.+-+ +.+++.-+-..++.++++++|=.||+-++|++.|.... -..+.+
T Consensus 127 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~l~~L~ld~~E~alLkAIvLfnpd~~gL------~~~~~V 199 (269)
T 3u9q_A 127 MNKDGVLISEGQGFMTREFLKSLRKPFGD-FMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGL------LNVKPI 199 (269)
T ss_dssp EETTEEEETTTTEEEEHHHHHHSCTTGGG-SSHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCTTSTTC------SCHHHH
T ss_pred cCCCCeEEeCCCccccHHHHHHhhhhHHH-HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCC------ccHHHH
Confidence 355788888872223221 001122233 35677778889999999999999999999998775333 111222
Q ss_pred hHHHHHHHHHHhhhhhhcccCCchhhhhHHHHHHHHH
Q 007953 487 KRAELGALARRLQGITKSVSRYPTFRRQFDDLVKTLT 523 (583)
Q Consensus 487 rrAqLqai~RRLqGI~~s~SR~PT~RRrf~~lvK~L~ 523 (583)
.+-| +.+.+=|+-.++ .++|.-..||-+++..|-
T Consensus 200 e~lq-e~~~~aL~~y~~--~~~p~~~~Rf~kLL~~Lp 233 (269)
T 3u9q_A 200 EDIQ-DNLLQALELQLK--LNHPESSQLFAKLLQKMT 233 (269)
T ss_dssp HHHH-HHHHHHHHHHHH--HHCTTSTTHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHH--HhCCChhhHHHHHHHHhH
Confidence 2222 111222222222 356888889998886654
No 39
>1pdu_A DHR38, nuclear hormone receptor HR38; nuclear receptor, ligand-binding domain, hormone/growth factor receptor complex; 2.30A {Drosophila melanogaster} SCOP: a.123.1.1
Probab=60.48 E-value=16 Score=34.69 Aligned_cols=65 Identities=12% Similarity=0.227 Sum_probs=44.7
Q ss_pred HHHHHHhhhcCCCceEeeCCceeecccCCCccccchhcchhHHHHHHHHHhccCChhHHHHhHhhhhcc
Q 007953 400 LQALLRSAMANSPGILLSDSVTEITSSNRPKDVFFDWFFNPFLIIKEQIKAENLTEAEEDYLSKLVLFC 468 (583)
Q Consensus 400 L~~LL~SaKanS~GlllsD~~~EiT~~NrPkd~~fDWff~PllviKeQIk~~~L~E~EE~yL~KlvL~~ 468 (583)
|..--+|. .+++++++.|| ..++... ....+-+ +++.+.-+-+++++++++++|=.||+-++|++
T Consensus 95 L~~a~rs~-~~~~~l~~~~g-~~~~~~~-~~~~~~~-~~~~l~~~~~~l~~L~ld~~E~~lLkAIvLfn 159 (244)
T 1pdu_A 95 LRLAYRAR-IDDTKLIFCNG-TVLHRTQ-CLRSFGE-WLNDIMEFSRSLHNLEIDISAFACLCALTLIT 159 (244)
T ss_dssp HHHHHHCC-SSCSEEECTTS-BEEEHHH-HHHHHTT-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHSS
T ss_pred HHHHHHhc-cCCCceEeeCC-eeecHHH-HHhHHHH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 33333444 35678999999 7665421 1112223 35667777889999999999999999999995
No 40
>1hg4_A Ultraspiracle; nuclear hormone receptor, transcription factor, ligand binding; HET: LPP; 2.4A {Drosophila melanogaster} SCOP: a.123.1.1
Probab=59.70 E-value=20 Score=34.14 Aligned_cols=71 Identities=18% Similarity=0.231 Sum_probs=43.1
Q ss_pred HHHHHHHhccCChhHHHHhHhhhhccCCcccccCCCCCCCchhhhHHHHHHHHHHhhhhhhcccCCchhhhhHHHHHHHH
Q 007953 443 IIKEQIKAENLTEAEEDYLSKLVLFCGNIGRLKDLNVSPPESERKRAELGALARRLQGITKSVSRYPTFRRQFDDLVKTL 522 (583)
Q Consensus 443 viKeQIk~~~L~E~EE~yL~KlvL~~~d~~r~~d~~g~pp~d~~rrAqLqai~RRLqGI~~s~SR~PT~RRrf~~lvK~L 522 (583)
-+-..+++++++++|=.||+-++|++.|.... .....+++.| +.+.+=|+-.++ .++|.-..||-+++..|
T Consensus 163 ~~~~~~~~L~ld~~E~~lLkAivL~npd~~gL------~~~~~v~~lq-~~~~~aL~~y~~--~~~p~~~~Rf~~LL~~L 233 (279)
T 1hg4_A 163 ELSVKMKRLNLDRRELSCLKAIILYNPDIRGI------KSRAEIEMCR-EKVYACLDEHCR--LEHPGDDGRFAQLLLRL 233 (279)
T ss_dssp HTHHHHHHHTCCHHHHHHHHHHHHSCTTSTTC------SCHHHHHHHH-HHHHHHHHHHHH--HHCTTCTTHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCC------CCHHHHHHHH-HHHHHHHHHHHH--HHCCChhhHHHHHHHHH
Confidence 45678999999999999999999998764332 1122333222 111222222222 24666667888877655
No 41
>3f5c_B Nuclear receptor subfamily 0 group B member 1; transcriptional corepressor, regulatory complex, DNA-binding, lipid-binding, metal-binding; 3.00A {Mus musculus}
Probab=59.22 E-value=27 Score=33.75 Aligned_cols=78 Identities=14% Similarity=0.040 Sum_probs=52.3
Q ss_pred cchhHHHHHHHHHhccCChhHHHHhHhhhhccCCcccccCCCCCCCchhhhHHHHHHHHHHhhhhhhcccCCchhhhhHH
Q 007953 437 FFNPFLIIKEQIKAENLTEAEEDYLSKLVLFCGNIGRLKDLNVSPPESERKRAELGALARRLQGITKSVSRYPTFRRQFD 516 (583)
Q Consensus 437 ff~PllviKeQIk~~~L~E~EE~yL~KlvL~~~d~~r~~d~~g~pp~d~~rrAqLqai~RRLqGI~~s~SR~PT~RRrf~ 516 (583)
+.+.+.-+-++++.++++++|=.||+-++|++.|.... -..+.+.+-| +.+.+=|+-.++ .++|.-..||-
T Consensus 155 ~i~~l~~~~~~l~~L~ld~~E~~lLkAivL~npd~~gL------~~~~~ve~lq-~~~~~aL~~y~~--~~~p~~~~Rf~ 225 (268)
T 3f5c_B 155 AVQAIKSFFFKCWSLNIDTKEYAYLKGTVLFNPDLPGL------QCVKYIEGLQ-WRTQQILTEHIR--MMQREYQIRSA 225 (268)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCTTSTTC------SCHHHHHHHH-HHHHHHHHHHHH--HHSSCSSHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCC------chHHHHHHHH-HHHHHHHHHHHH--HHCCChHHHHH
Confidence 34677788899999999999999999999999765433 1223333332 222333333333 36777788998
Q ss_pred HHHHHHH
Q 007953 517 DLVKTLT 523 (583)
Q Consensus 517 ~lvK~L~ 523 (583)
+++..|-
T Consensus 226 ~LL~~Lp 232 (268)
T 3f5c_B 226 ELNSALF 232 (268)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8886554
No 42
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Probab=58.94 E-value=41 Score=34.62 Aligned_cols=105 Identities=19% Similarity=0.269 Sum_probs=62.9
Q ss_pred cCCCceEeeCCceeeccc--CCCccccchhcchhHHHHHHHHHhccCChhHHHHhHhhhhccCCcccccCCCCCCCchhh
Q 007953 409 ANSPGILLSDSVTEITSS--NRPKDVFFDWFFNPFLIIKEQIKAENLTEAEEDYLSKLVLFCGNIGRLKDLNVSPPESER 486 (583)
Q Consensus 409 anS~GlllsD~~~EiT~~--NrPkd~~fDWff~PllviKeQIk~~~L~E~EE~yL~KlvL~~~d~~r~~d~~g~pp~d~~ 486 (583)
.+.+|.++.+|..-++.. ...+..+-| +.+++.-+-+.+++++|+++|=.||+-+||++.|..-+ -..+.|
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~i~~f~~~l~~L~ld~~E~alLkAivLf~pD~~gL------~~~~~V 348 (419)
T 3dzy_D 276 MNKDGVLISEGQGFMTREFLKSLRKPFGD-FMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGL------LNVKPI 348 (419)
T ss_dssp BCSSEEEEGGGTEEEEHHHHHSSSGGGSG-GGHHHHHHHHHHHHTCCCHHHHHHHHHHHHSCTTSTTC------SCHHHH
T ss_pred hcCCCceeecCcccccHHHHHhhhhhHHH-HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCC------CCHHHH
Confidence 355677776662222221 111122333 45778888899999999999999999999998765333 222333
Q ss_pred hHHHHHHHHHHhhhhhhcccCCchhhhhHHHHHHHHH
Q 007953 487 KRAELGALARRLQGITKSVSRYPTFRRQFDDLVKTLT 523 (583)
Q Consensus 487 rrAqLqai~RRLqGI~~s~SR~PT~RRrf~~lvK~L~ 523 (583)
.+-|=+ +.+=|+--++ .++|.-..||-.|+..|-
T Consensus 349 e~lQe~-~~~aL~~yi~--~~~p~~~~rf~kLLl~Lp 382 (419)
T 3dzy_D 349 EDIQDN-LLQALELQLK--LNHPESSQLFAKLLQKMT 382 (419)
T ss_dssp HHHHHH-HHHHHHHHHH--HHCTTCTTHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHH--HhCCChhhHHHHHHHHHH
Confidence 332211 1122222222 367888899999887664
No 43
>1nq7_A Nuclear receptor ROR-beta; ligand-binding domain, retinoids, retinoic acid, synthetic ligand, antagonist, transcription; HET: ARL; 1.50A {Rattus norvegicus} SCOP: a.123.1.1 PDB: 1k4w_A* 1n4h_A*
Probab=56.98 E-value=57 Score=30.53 Aligned_cols=102 Identities=14% Similarity=0.061 Sum_probs=58.9
Q ss_pred cCCCceEeeCCceeecccCCCccccchhcchhHHHHHHHHHhccCChhHHHHhHhhhhccCCcccccCCCCCCCchhhhH
Q 007953 409 ANSPGILLSDSVTEITSSNRPKDVFFDWFFNPFLIIKEQIKAENLTEAEEDYLSKLVLFCGNIGRLKDLNVSPPESERKR 488 (583)
Q Consensus 409 anS~GlllsD~~~EiT~~NrPkd~~fDWff~PllviKeQIk~~~L~E~EE~yL~KlvL~~~d~~r~~d~~g~pp~d~~rr 488 (583)
..++.+++ || ..++...-....+-+ +.+.+.-+-.+++.++++++|=.||+-++|++.|.... ...+.+.+
T Consensus 106 ~~~~~~~~-~g-~~~~~~~~~~~~~~~-~~~~i~~~~~~l~~L~ld~~E~~lLkAivL~~pd~~gL------~~~~~v~~ 176 (244)
T 1nq7_A 106 PLNNTVLF-EG-KYGGMQMFKALGSDD-LVNEAFDFAKNLCSLQLTEEEIALFSSAVLISPDRAWL------LEPRKVQK 176 (244)
T ss_dssp TTTTEEEE-TT-EEEEGGGGGGGSCHH-HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHSCTTSTTC------SCHHHHHH
T ss_pred CCCCEEeE-CC-EEecHHHHhhcChHH-HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCC------CCHHHHHH
Confidence 34566666 88 666532111112233 35677777889999999999999999999998764333 11222222
Q ss_pred HHHHHHHHHhhhhhhcccCCchhhhhHHHHHHHHH
Q 007953 489 AELGALARRLQGITKSVSRYPTFRRQFDDLVKTLT 523 (583)
Q Consensus 489 AqLqai~RRLqGI~~s~SR~PT~RRrf~~lvK~L~ 523 (583)
.| +.+.+=|+-.++ .++|.-- ||-+++..|.
T Consensus 177 lq-~~~~~aL~~y~~--~~~~~~~-Rf~~LL~~L~ 207 (244)
T 1nq7_A 177 LQ-EKIYFALQHVIQ--KNHLDDE-TLAKLIAKIP 207 (244)
T ss_dssp HH-HHHHHHHHHHHH--HHCSCTT-HHHHHHHTHH
T ss_pred HH-HHHHHHHHHHHH--HhCCCcc-HHHHHHHHHH
Confidence 21 122222333332 3456544 8888776544
No 44
>2o4j_A Vitamin D3 receptor; nuclear receptor-ligand complex, hormone/growth factor receptor complex; HET: VD4; 1.74A {Rattus norvegicus} SCOP: a.123.1.1 PDB: 1rk3_A* 1rjk_A* 1rkh_A* 1rkg_A* 2o4r_A*
Probab=56.29 E-value=23 Score=34.38 Aligned_cols=78 Identities=17% Similarity=0.284 Sum_probs=48.3
Q ss_pred cchhHHHHHHHHHhccCChhHHHHhHhhhhccCCcccccCCCCCCCchhhhHHHHHHHHHHhhhhhhcccCCc--hhhhh
Q 007953 437 FFNPFLIIKEQIKAENLTEAEEDYLSKLVLFCGNIGRLKDLNVSPPESERKRAELGALARRLQGITKSVSRYP--TFRRQ 514 (583)
Q Consensus 437 ff~PllviKeQIk~~~L~E~EE~yL~KlvL~~~d~~r~~d~~g~pp~d~~rrAqLqai~RRLqGI~~s~SR~P--T~RRr 514 (583)
+.+++.-+-.+++.++++++|=.||+-++|++.|.... ...+.+.+.| +.+.+=|+-.++ .++| .-..|
T Consensus 143 ~~~~l~~~~~~l~~L~ld~~E~~lLkAIvLfnpd~~gL------~~~~~Ve~lq-~~~~~aL~~y~~--~~~p~~~~~~R 213 (292)
T 2o4j_A 143 LIEPLIKFQVGLKKLNLHEEEHVLLMAICIVSPDRPGV------QDAKLVEAIQ-DRLSNTLQTYIR--CRHPPPGSHQL 213 (292)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHSCTTSTTC------SCHHHHHHHH-HHHHHHHHHHHH--HHSCTTTTTTH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCC------ccHHHHHHHH-HHHHHHHHHHHH--HhCCCCchhhH
Confidence 45666677789999999999999999999998764332 1122222221 122222332232 4566 67788
Q ss_pred HHHHHHHHH
Q 007953 515 FDDLVKTLT 523 (583)
Q Consensus 515 f~~lvK~L~ 523 (583)
|-+++..|-
T Consensus 214 f~~LL~~L~ 222 (292)
T 2o4j_A 214 YAKMIQKLA 222 (292)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888775543
No 45
>1osh_A BIle acid receptor; nuclear receptor, ligand binding domain, transcription; HET: FEX; 1.80A {Homo sapiens} SCOP: a.123.1.1 PDB: 3l1b_A* 3bej_A* 3fli_A* 3hc5_A* 3rvf_A* 3dct_A* 3dcu_A* 3ruu_A* 3rut_A* 3olf_A* 3okh_A* 3fxv_A* 3oki_A* 3omk_A* 3omm_A* 3oof_A* 3ook_A* 3hc6_A* 3p89_A* 3p88_A* ...
Probab=51.75 E-value=43 Score=30.82 Aligned_cols=78 Identities=19% Similarity=0.300 Sum_probs=50.5
Q ss_pred cchhHHHHHHHHHhccCChhHHHHhHhhhhccCCcccccCCCCCCCchhhhHHHHHHHHHHhhhhhhcccCCchhhhhHH
Q 007953 437 FFNPFLIIKEQIKAENLTEAEEDYLSKLVLFCGNIGRLKDLNVSPPESERKRAELGALARRLQGITKSVSRYPTFRRQFD 516 (583)
Q Consensus 437 ff~PllviKeQIk~~~L~E~EE~yL~KlvL~~~d~~r~~d~~g~pp~d~~rrAqLqai~RRLqGI~~s~SR~PT~RRrf~ 516 (583)
+.+.+.-+-.+++.++++++|=.||+-++|++.|.... ...+.+.+.| +.+.+=|+-.++ .++|.-..||-
T Consensus 121 ~~~~i~~~~~~l~~L~ld~~E~~lLkaivL~~pd~~gL------~~~~~v~~~q-~~~~~aL~~y~~--~~~~~~~~Rf~ 191 (232)
T 1osh_A 121 YITPMFSFYKSIGELKMTQEEYALLTAIVILSPDRQYI------KDREAVEKLQ-EPLLDVLQKLCK--IHQPENPQHFA 191 (232)
T ss_dssp THHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCTTCTTC------SCHHHHHHHH-HHHHHHHHHHHH--HHCTTCTTHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCC------CChHHHHHHH-HHHHHHHHHHHH--HHCCCchhHHH
Confidence 34566667789999999999999999999998764322 2233333332 122222333333 45777778998
Q ss_pred HHHHHHH
Q 007953 517 DLVKTLT 523 (583)
Q Consensus 517 ~lvK~L~ 523 (583)
+++..|-
T Consensus 192 ~LL~~L~ 198 (232)
T 1osh_A 192 CLLGRLT 198 (232)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8886654
No 46
>2hc4_A Vitamin D receptor; alpha helical sandwich, gene regulation; HET: VDX; 2.20A {Danio rerio} PDB: 2hbh_A* 2hcd_A* 3dr1_A* 3o1d_A* 3o1e_A*
Probab=51.27 E-value=37 Score=33.23 Aligned_cols=78 Identities=17% Similarity=0.255 Sum_probs=50.5
Q ss_pred cchhHHHHHHHHHhccCChhHHHHhHhhhhccCCcccccCCCCCCCchhhhHHHHHHHHHHhhhhhhcccCCchhhhhHH
Q 007953 437 FFNPFLIIKEQIKAENLTEAEEDYLSKLVLFCGNIGRLKDLNVSPPESERKRAELGALARRLQGITKSVSRYPTFRRQFD 516 (583)
Q Consensus 437 ff~PllviKeQIk~~~L~E~EE~yL~KlvL~~~d~~r~~d~~g~pp~d~~rrAqLqai~RRLqGI~~s~SR~PT~RRrf~ 516 (583)
+.+++.-+-..++.++++++|=.||+-++|++.|.... .....+.+.| +.+.+=|+-.++ .++|.-..||-
T Consensus 186 ~~~~l~~~~~~l~~L~ld~~E~alLkAIvLfnpd~~gL------~~~~~Ve~lq-e~~~~aL~~y~~--~~~p~~~~RF~ 256 (302)
T 2hc4_A 186 LLEPLVKFQVGLKKLKLHEEEHVLLMAICLLSPDRPGV------QDHVRIEALQ-DRLCDVLQAYIR--IQHPGGRLLYA 256 (302)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSCSTTC------SCHHHHHHHH-HHHHHHHHHHHH--HHCTTCTTHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC------cCHHHHHHHH-HHHHHHHHHHHH--HHCCChhHHHH
Confidence 45677777789999999999999999999998774333 1122222222 122222333332 36788888998
Q ss_pred HHHHHHH
Q 007953 517 DLVKTLT 523 (583)
Q Consensus 517 ~lvK~L~ 523 (583)
+++..|-
T Consensus 257 ~LLl~L~ 263 (302)
T 2hc4_A 257 KMIQKLA 263 (302)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8886554
No 47
>1nrl_A Orphan nuclear receptor PXR; PXR, xenobiotic, SRC-1, ligand binding domain, transcription; HET: SRL; 2.00A {Homo sapiens} SCOP: a.123.1.1 PDB: 1ilh_A* 1ilg_A* 1m13_A* 2qnv_A* 3r8d_A* 3ctb_A 3ctc_A 3hvl_A* 1skx_A* 2o9i_A*
Probab=47.41 E-value=70 Score=31.83 Aligned_cols=100 Identities=17% Similarity=0.201 Sum_probs=57.4
Q ss_pred ceEeeCCceeecccCCCccccchhcchhHHHHHHHHHhccCChhHHHHhHhhhhccCCcccccCCCCCCCchhhhHHHHH
Q 007953 413 GILLSDSVTEITSSNRPKDVFFDWFFNPFLIIKEQIKAENLTEAEEDYLSKLVLFCGNIGRLKDLNVSPPESERKRAELG 492 (583)
Q Consensus 413 GlllsD~~~EiT~~NrPkd~~fDWff~PllviKeQIk~~~L~E~EE~yL~KlvL~~~d~~r~~d~~g~pp~d~~rrAqLq 492 (583)
+.++.+| ..++...- +..+-+=+.+++.-+-.+++.++++++|=.||+-++|++.|.... .....+.+.| +
T Consensus 179 ~~~l~~~-~~~~~~~~-~~g~~~~~~~~i~~~~~~l~~L~ld~~E~alLkAIvLfnpd~~gL------~~~~~Ve~lq-e 249 (316)
T 1nrl_A 179 GTWECGR-LSYCLEDT-AGGFQQLLLEPMLKFHYMLKKLQLHEEEYVLMQAISLFSPDRPGV------LQHRVVDQLQ-E 249 (316)
T ss_dssp TEEEETT-EEEEECCC-SSCHHHHTTSHHHHHHHHHHHTCCCHHHHHHHHHHHHTCTTSTTC------SCHHHHHHHH-H
T ss_pred CeEEECC-EeecHHHH-hccccHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCC------ccHHHHHHHH-H
Confidence 3444455 55543322 222221245677777889999999999999999999998764322 1112222222 1
Q ss_pred HHHHHhhhhhhcccCCc--hhhhhHHHHHHHHH
Q 007953 493 ALARRLQGITKSVSRYP--TFRRQFDDLVKTLT 523 (583)
Q Consensus 493 ai~RRLqGI~~s~SR~P--T~RRrf~~lvK~L~ 523 (583)
.+..=|+--++ .++| .-..||-+++..|-
T Consensus 250 ~~~~aL~~y~~--~~~p~~~~~~RF~kLLl~Lp 280 (316)
T 1nrl_A 250 QFAITLKSYIE--CNRPQPAHRFLFLKIMAMLT 280 (316)
T ss_dssp HHHHHHHHHHH--HHCCSGGGTTHHHHHHHHHH
T ss_pred HHHHHHHHHHH--HhCCCCchhHHHHHHHHHHH
Confidence 11222222222 3567 67788988876554
No 48
>3vi8_A Peroxisome proliferator-activated receptor alpha; nuclear receptor, protein-ligand complex, PPAR, transcriptio; HET: 13M; 1.75A {Homo sapiens} PDB: 2znn_A* 3et1_A* 3kdu_A* 3kdt_A* 2rew_A* 1i7g_A* 3g8i_A* 1kkq_A* 1k7l_A* 3sp6_A* 2npa_A* 2p54_A* 3fei_A* 3tkm_A* 2znq_A* 2znp_A* 3sp9_A* 3gwx_A* 3dy6_A* 1gwx_A* ...
Probab=46.51 E-value=52 Score=31.82 Aligned_cols=78 Identities=14% Similarity=0.219 Sum_probs=49.4
Q ss_pred cchhHHHHHHHHHhccCChhHHHHhHhhhhccCCcccccCCCCCCCchhhhHHHHHHHHHHhhhhhhcccCCchhhhhHH
Q 007953 437 FFNPFLIIKEQIKAENLTEAEEDYLSKLVLFCGNIGRLKDLNVSPPESERKRAELGALARRLQGITKSVSRYPTFRRQFD 516 (583)
Q Consensus 437 ff~PllviKeQIk~~~L~E~EE~yL~KlvL~~~d~~r~~d~~g~pp~d~~rrAqLqai~RRLqGI~~s~SR~PT~RRrf~ 516 (583)
+.+++.-+=.+++.++++++|=.||+-+||++.|.... -..+.+.+.|= .+..=|+=-++ +++|.-..||-
T Consensus 159 ~~~~l~~~~~~~~~L~ld~~E~alLkAivLf~pd~~gL------~~~~~Ve~lqe-~~~~aL~~yi~--~~~p~~~~rF~ 229 (273)
T 3vi8_A 159 IMEPKFDFAMKFNALELDDSDISLFVAAIICCGDRPGL------LNVGHIEKMQE-GIVHVLRLHLQ--SNHPDDIFLFP 229 (273)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHSCTTCTTC------SCHHHHHHHHH-HHHHHHHHHHH--HHCTTCTTHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCc------ccHHHHHHHHH-HHHHHHHHHHH--HhCCChhhHHH
Confidence 34677777789999999999999999999998765433 11222322221 11122222222 35788888898
Q ss_pred HHHHHHH
Q 007953 517 DLVKTLT 523 (583)
Q Consensus 517 ~lvK~L~ 523 (583)
.++..|-
T Consensus 230 kLL~~Lp 236 (273)
T 3vi8_A 230 KLLQKMA 236 (273)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8876653
No 49
>3b0t_A Vitamin D3 receptor; nuclear receptor, transcription, gene regulation; HET: MCZ; 1.30A {Homo sapiens} PDB: 3a40_X* 1s0z_A* 1s19_A* 2ham_A* 2har_A* 2has_A* 1txi_A* 2hb8_A* 2hb7_A* 3a3z_X* 3a78_A* 3auq_A* 3aur_A* 3ax8_A* 3cs4_A* 3cs6_A* 1ie9_A* 1db1_A* 1ie8_A* 3kpz_A* ...
Probab=43.75 E-value=37 Score=31.75 Aligned_cols=78 Identities=17% Similarity=0.270 Sum_probs=47.9
Q ss_pred cchhHHHHHHHHHhccCChhHHHHhHhhhhccCCcccccCCCCCCCchhhhHHHHHHHHHHhhhhhhcccCCc--hhhhh
Q 007953 437 FFNPFLIIKEQIKAENLTEAEEDYLSKLVLFCGNIGRLKDLNVSPPESERKRAELGALARRLQGITKSVSRYP--TFRRQ 514 (583)
Q Consensus 437 ff~PllviKeQIk~~~L~E~EE~yL~KlvL~~~d~~r~~d~~g~pp~d~~rrAqLqai~RRLqGI~~s~SR~P--T~RRr 514 (583)
+.+.+.-+-..++.++++++|=.||+-++|++.|.... ...+.+.+.| +.+.+=|+-.++ .++| .-..|
T Consensus 140 ~~~~l~~~~~~l~~L~ld~~E~~lLkAivL~~pd~~gL------~~~~~v~~lq-~~~~~aL~~y~~--~~~~~~~~~~R 210 (254)
T 3b0t_A 140 LIEPLIKFQVGLKKLNLHEEEHVLLMAICIVSPDRPGV------QDAALIEAIQ-DRLSNTLQTYIR--CRHPPPGSHLL 210 (254)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHSCSCSTTC------SCHHHHHHHH-HHHHHHHHHHHH--HHCCTTTTTTH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCC------cCHHHHHHHH-HHHHHHHHHHHH--HhCCCCCchhH
Confidence 34566667789999999999999999999998774333 1122222221 112222222222 3556 66778
Q ss_pred HHHHHHHHH
Q 007953 515 FDDLVKTLT 523 (583)
Q Consensus 515 f~~lvK~L~ 523 (583)
|-+++..|-
T Consensus 211 f~~LL~~L~ 219 (254)
T 3b0t_A 211 YAKMIQKLA 219 (254)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhH
Confidence 888776554
No 50
>1n83_A Nuclear receptor ROR-alpha; three-layered alpha helical sandwich, transcription regulation, nuclear protein, DNA binding, lipid binding protein; HET: CLR; 1.63A {Homo sapiens} SCOP: a.123.1.1 PDB: 1s0x_A*
Probab=35.44 E-value=1.8e+02 Score=27.78 Aligned_cols=77 Identities=16% Similarity=0.211 Sum_probs=47.2
Q ss_pred cchhHHHHHHHHHhccCChhHHHHhHhhhhccCCcccccCCCCCCCchhhhHHHHHHHHHHhhhhhhcccCCchhhhhHH
Q 007953 437 FFNPFLIIKEQIKAENLTEAEEDYLSKLVLFCGNIGRLKDLNVSPPESERKRAELGALARRLQGITKSVSRYPTFRRQFD 516 (583)
Q Consensus 437 ff~PllviKeQIk~~~L~E~EE~yL~KlvL~~~d~~r~~d~~g~pp~d~~rrAqLqai~RRLqGI~~s~SR~PT~RRrf~ 516 (583)
+.+.+.-+-.+++.++++++|=.||+-++|++.|.... .....+.+-| +.+.+=|+-.++ .++|. ..||-
T Consensus 146 ~~~~i~~~~~~l~~L~ld~~E~~lLkAivLfnpd~~gL------~~~~~ve~lq-~~~~~aL~~y~~--~~~~~-~~Rf~ 215 (270)
T 1n83_A 146 FISFVFEFGKSLCSMHLTEDEIALFSAFVLMSADRSWL------QEKVKIEKLQ-QKIQLALQHVLQ--KNHRE-DGILT 215 (270)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHSCTTSTTC------SCHHHHHHHH-HHHHHHHHHHHH--HHCTT-SCHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCC------CCHHHHHHHH-HHHHHHHHHHHH--HhCCc-hhHHH
Confidence 45666667789999999999999999999998764333 1122222211 122222333332 23453 57888
Q ss_pred HHHHHHH
Q 007953 517 DLVKTLT 523 (583)
Q Consensus 517 ~lvK~L~ 523 (583)
+++..|-
T Consensus 216 ~LL~~L~ 222 (270)
T 1n83_A 216 KLICKVS 222 (270)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8876654
No 51
>2oqj_C Peptide 2G12.1 (ACPPSHVLDMRSGTCLAAEGK); immunoglobulin fold, immune system; 2.80A {Homo sapiens}
Probab=35.05 E-value=8.9 Score=26.34 Aligned_cols=13 Identities=38% Similarity=0.951 Sum_probs=11.1
Q ss_pred ccccCCCCCcCCC
Q 007953 298 DILDMPEGSCFPR 310 (583)
Q Consensus 298 D~LylrEGScfPR 310 (583)
.+|+||.|+|+-.
T Consensus 6 hvldmrsgtclaa 18 (26)
T 2oqj_C 6 HVLDMRSGTCLAA 18 (26)
T ss_pred heeeccCCceEee
Confidence 5799999999864
No 52
>2khv_A Phage integrase; solution structure, GFT, NESG, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Nitrosospira multiformis atcc 25196}
Probab=32.32 E-value=47 Score=26.14 Aligned_cols=46 Identities=2% Similarity=-0.023 Sum_probs=36.6
Q ss_pred CCchhhhHHHHHHHHHHhhhhhhcccCCchhhhhHHHHHHHHHHHHHHhcCC
Q 007953 481 PPESERKRAELGALARRLQGITKSVSRYPTFRRQFDDLVKTLTEDLAKKNGG 532 (583)
Q Consensus 481 pp~d~~rrAqLqai~RRLqGI~~s~SR~PT~RRrf~~lvK~L~~~~~~~~~~ 532 (583)
-|.+++++.++|++.+++.. + -++..+|...+++.+..+|.+.+-.
T Consensus 42 ~~l~~It~~~i~~~~~~l~~--~----~~~t~~~~~~~l~~i~~~Av~~~~i 87 (106)
T 2khv_A 42 LSVQDVDTKLIMKVLDPIWE--Q----KPETASRLRGRIESVLDWATVRGYR 87 (106)
T ss_dssp SBSSSCCHHHHHHHHHHHHH--H----CHHHHHHHHHHHHHHHHHHHHHTSS
T ss_pred ccHHHcCHHHHHHHHHHHHH--h----ChHHHHHHHHHHHHHHHHHHHcCCc
Confidence 34688999999999998752 1 1367788999999999999987654
No 53
>2khq_A Integrase; all-alpha, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Staphylococcus saprophyticus subsp}
Probab=30.05 E-value=69 Score=24.71 Aligned_cols=46 Identities=11% Similarity=0.062 Sum_probs=37.1
Q ss_pred CchhhhHHHHHHHHHHhhhhhhcccCCchhhhhHHHHHHHHHHHHHHhcCC
Q 007953 482 PESERKRAELGALARRLQGITKSVSRYPTFRRQFDDLVKTLTEDLAKKNGG 532 (583)
Q Consensus 482 p~d~~rrAqLqai~RRLqGI~~s~SR~PT~RRrf~~lvK~L~~~~~~~~~~ 532 (583)
+.+++.+.+++++.+.|. +.. =|+..+|....++++..+|.+.+-.
T Consensus 43 ~l~~it~~~i~~~~~~l~---~~~--s~~t~~~~~~~l~~~~~~a~~~~~i 88 (110)
T 2khq_A 43 LLKDIKRTEYQKFLNEYG---LTH--SYETIRKLNSYIRNAFDDAIHEGYV 88 (110)
T ss_dssp BGGGCCHHHHHHHHHHHH---HHS--CHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CHhhCCHHHHHHHHHHHH---HHh--hHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 568899999999998885 222 3677888999999999999987654
No 54
>3up3_A Acedaf-12; ligand binding domain, nematode, steroid binding protein- transcription complex; HET: XCA; 1.25A {Ancylostoma ceylanicum} PDB: 3up0_A*
Probab=29.90 E-value=63 Score=30.65 Aligned_cols=84 Identities=13% Similarity=0.019 Sum_probs=50.5
Q ss_pred cccchhcchhHHHHHHHHHh-ccCChhHHHHhHhhhhccCCcccccCCCCCCCc---hhhhHHHHHHHHHHhhhhhhccc
Q 007953 431 DVFFDWFFNPFLIIKEQIKA-ENLTEAEEDYLSKLVLFCGNIGRLKDLNVSPPE---SERKRAELGALARRLQGITKSVS 506 (583)
Q Consensus 431 d~~fDWff~PllviKeQIk~-~~L~E~EE~yL~KlvL~~~d~~r~~d~~g~pp~---d~~rrAqLqai~RRLqGI~~s~S 506 (583)
..+-||+.+.+.-.=..+++ ++++++|=.||+-++|++.| + |.-.. ..+.+-| +.+..=|+--+++
T Consensus 123 ~g~~~~~~~~l~~~~~~~~~~L~ld~~E~alLkAivLfsp~--~-----gL~~~~~~~~Ve~lQ-e~~~~aL~~y~~~-- 192 (243)
T 3up3_A 123 ADVRSEQKMRFLQFFKIFHEDIRSNDLVISMIMLIVLFSPR--D-----SITDPEDRRIIARHH-EQFSALLNRYLES-- 192 (243)
T ss_dssp TTTHHHHHHHHHHHHHTSCHHHHTCHHHHHHHHHHHHSCCC--T-----TCCCHHHHHHHHHHH-HHHHHHHHHHHHH--
T ss_pred ccccHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhcCCC--C-----CCCCcchHHHHHHHH-HHHHHHHHHHHHH--
Confidence 45666666676666667776 99999999999999999733 2 22222 1121111 1122223333332
Q ss_pred CC-chhhhhHHHHHHHHHH
Q 007953 507 RY-PTFRRQFDDLVKTLTE 524 (583)
Q Consensus 507 R~-PT~RRrf~~lvK~L~~ 524 (583)
++ |.-..||-++.-.|-+
T Consensus 193 ~~~p~~~~rf~kLL~~Lp~ 211 (243)
T 3up3_A 193 LYGDDAHQLNEQLPTALRM 211 (243)
T ss_dssp HHGGGHHHHHHHHHHHHHH
T ss_pred hcCCChhHHHHHHHHHHHH
Confidence 33 7888899988876643
No 55
>3l0l_A Nuclear receptor ROR-gamma; nuclear receptor, rorgamma, alternative splicing, DNA-bindin binding, nucleus, receptor, zinc-finger, acetylation, activator; HET: HC3; 1.74A {Homo sapiens} SCOP: a.123.1.0 PDB: 3b0w_A* 3kyt_A* 3l0j_A*
Probab=29.89 E-value=1.2e+02 Score=28.54 Aligned_cols=37 Identities=16% Similarity=0.224 Sum_probs=31.9
Q ss_pred cchhHHHHHHHHHhccCChhHHHHhHhhhhccCCccc
Q 007953 437 FFNPFLIIKEQIKAENLTEAEEDYLSKLVLFCGNIGR 473 (583)
Q Consensus 437 ff~PllviKeQIk~~~L~E~EE~yL~KlvL~~~d~~r 473 (583)
+.+++.-+-+.++.++++++|=.||+-++|++.|...
T Consensus 137 ~~~~l~~~~~~l~~L~ld~~E~~lLkAivLfnpd~~g 173 (248)
T 3l0l_A 137 LISSIFDFSHSLSALHFSEDEIALYTALVLINAHRPG 173 (248)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHSCTTCTT
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC
Confidence 3677778889999999999999999999999877533
No 56
>3p0u_A Nuclear receptor subfamily 2 group C member 2; ligand binding domain, orphan nuclear receptor, testicular R 4, signaling protein; 3.00A {Homo sapiens}
Probab=26.65 E-value=71 Score=30.05 Aligned_cols=72 Identities=18% Similarity=0.219 Sum_probs=45.5
Q ss_pred HHHHHHHHhccCChhHHHHhHhhhhccCCcccccCCCCCCCchhhhHHHHHHHHHHhhhhhhcccCCchhhhhHHHHHHH
Q 007953 442 LIIKEQIKAENLTEAEEDYLSKLVLFCGNIGRLKDLNVSPPESERKRAELGALARRLQGITKSVSRYPTFRRQFDDLVKT 521 (583)
Q Consensus 442 lviKeQIk~~~L~E~EE~yL~KlvL~~~d~~r~~d~~g~pp~d~~rrAqLqai~RRLqGI~~s~SR~PT~RRrf~~lvK~ 521 (583)
.-+-++++.++++++|=.||+-++|++.|.... ...+.+.+.|= .+.+-|+--++ .++|.-..||-+++-.
T Consensus 129 ~~~~~~l~~L~ld~~E~~lLkAivL~~pd~~gL------~~~~~v~~lq~-~~~~aL~~y~~--~~~~~~~~Rf~~LL~~ 199 (249)
T 3p0u_A 129 QEFCNSMAKLDIDGYEYAYLKAIVLFSPDHPGL------TSTSQIEKFQE-AAQMELQDYVQ--ATYSEDTYRLARILVR 199 (249)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHTCSCSTTC------CCSHHHHHHHH-HHHHHHHHHHH--HHTTTCSTHHHHHHTT
T ss_pred HHHHHHHHhhCCCHHHHHHHHHHHHhcCCCCCC------ccHHHHHHHHH-HHHHHHHHHHH--HhCCChHHHHHHHHHH
Confidence 345678999999999999999999999765433 11233333221 12222333332 2567777899888765
Q ss_pred H
Q 007953 522 L 522 (583)
Q Consensus 522 L 522 (583)
|
T Consensus 200 L 200 (249)
T 3p0u_A 200 L 200 (249)
T ss_dssp H
T ss_pred H
Confidence 5
No 57
>2oxo_A Integrase; DNA-binding protein, four-helix bundle, DNA binding protein; 2.00A {Unidentified phage}
Probab=25.69 E-value=1.1e+02 Score=22.45 Aligned_cols=46 Identities=7% Similarity=0.008 Sum_probs=37.6
Q ss_pred CchhhhHHHHHHHHHHhhhhhhcccCCchhhhhHHHHHHHHHHHHHHhcCC
Q 007953 482 PESERKRAELGALARRLQGITKSVSRYPTFRRQFDDLVKTLTEDLAKKNGG 532 (583)
Q Consensus 482 p~d~~rrAqLqai~RRLqGI~~s~SR~PT~RRrf~~lvK~L~~~~~~~~~~ 532 (583)
+.+++.+.+++++.+.+..= -| |...+|....++++..+|.+.+-.
T Consensus 42 ~l~~it~~~i~~~~~~l~~~---~~--~~t~~~~~~~l~~~~~~a~~~~~i 87 (103)
T 2oxo_A 42 PLEDITTKEIAAMLNGYIDE---GK--AASAKLIRSTLSDAFREAIAEGHI 87 (103)
T ss_dssp BGGGCCHHHHHHHHHHHHHT---TC--HHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred chhhCCHHHHHHHHHHHHHC---CC--HHHHHHHHHHHHHHHHHHHHcCCC
Confidence 46789999999999888531 12 888899999999999999988654
No 58
>2kj9_A Integrase; DNA_BRE_C superfamily, INTB, PSI-2, structural genomics, protein structure initiative; NMR {Pectobacterium atrosepticum}
Probab=24.04 E-value=94 Score=25.10 Aligned_cols=46 Identities=7% Similarity=0.055 Sum_probs=37.5
Q ss_pred CchhhhHHHHHHHHHHhhhhhhcccCCchhhhhHHHHHHHHHHHHHHhcCC
Q 007953 482 PESERKRAELGALARRLQGITKSVSRYPTFRRQFDDLVKTLTEDLAKKNGG 532 (583)
Q Consensus 482 p~d~~rrAqLqai~RRLqGI~~s~SR~PT~RRrf~~lvK~L~~~~~~~~~~ 532 (583)
+.+++++.++|.+.++|.. + .-|+..+|...+++.+..+|.+.+-.
T Consensus 51 ~l~~It~~~i~~~l~~l~~--~---~~~~t~~~~~~~L~~if~~Av~~g~i 96 (118)
T 2kj9_A 51 DIAELDTGDLLVPIKKIEK--L---GYLEIAMRVKQYATAIMRYAVQQKMI 96 (118)
T ss_dssp BGGGCCHHHHHHHHHHHHT--T---TCHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred CHHHCCHHHHHHHHHHHHH--C---CCHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 5789999999999988742 1 13788899999999999999987654
No 59
>2kiw_A INT protein; alpha, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Staphylococcus haemolyticus JCSC1435}
Probab=23.39 E-value=1.3e+02 Score=23.17 Aligned_cols=46 Identities=4% Similarity=-0.021 Sum_probs=36.9
Q ss_pred CchhhhHHHHHHHHHHhhhhhhcccCCchhhhhHHHHHHHHHHHHHHhcCC
Q 007953 482 PESERKRAELGALARRLQGITKSVSRYPTFRRQFDDLVKTLTEDLAKKNGG 532 (583)
Q Consensus 482 p~d~~rrAqLqai~RRLqGI~~s~SR~PT~RRrf~~lvK~L~~~~~~~~~~ 532 (583)
+.+++.+.+++++...|.. . .=|+..+|....++++..+|.+.+-.
T Consensus 40 ~l~~It~~~i~~~~~~l~~---~--~s~~t~~~~~~~lr~~~~~A~~~~~i 85 (111)
T 2kiw_A 40 PIQTIKKHDYQRFVDDISA---Q--YSKNYVDSIVASTNMIFKYAYDTRLI 85 (111)
T ss_dssp CGGGCCHHHHHHHHHHHHT---T--SCHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred cHHHcCHHHHHHHHHHHHh---h--hCHHHHHHHHHHHHHHHHHHHHhCCh
Confidence 4678999999999998852 2 23677888999999999999987654
No 60
>2kj8_A Putative prophage CPS-53 integrase; INTS, INTC, YFDB, DNA integration, DNA recombination, structural genomics, protein structure initiative; NMR {Escherichia coli k-12}
Probab=22.07 E-value=1.1e+02 Score=24.35 Aligned_cols=46 Identities=7% Similarity=-0.073 Sum_probs=37.1
Q ss_pred CchhhhHHHHHHHHHHhhhhhhcccCCchhhhhHHHHHHHHHHHHHHhcCC
Q 007953 482 PESERKRAELGALARRLQGITKSVSRYPTFRRQFDDLVKTLTEDLAKKNGG 532 (583)
Q Consensus 482 p~d~~rrAqLqai~RRLqGI~~s~SR~PT~RRrf~~lvK~L~~~~~~~~~~ 532 (583)
+.+++.+.++|++..+|+.- .-|+..+|....++++..+|.+.+-.
T Consensus 46 ~l~~It~~~i~~~~~~l~~~-----~s~~t~~~~~~~l~~~~~~Av~~~~i 91 (118)
T 2kj8_A 46 EIQDIEPMQLLEVIRRFEDR-----GAMERANKARRRCGEVFRYAIVTGRA 91 (118)
T ss_dssp BTTSCCHHHHHHHHHHHHTT-----TCHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred cHHHCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 46789999999999888531 13678889999999999999987654
No 61
>1srz_A Gamma-aminobutyric acid type B receptor, subunit 1; GABA(B) receptor, CIS-trans isomerization, CCP module, sushi domain; NMR {Rattus norvegicus} SCOP: g.18.1.1 PDB: 1ss2_A
Probab=21.89 E-value=41 Score=25.65 Aligned_cols=20 Identities=30% Similarity=0.464 Sum_probs=16.5
Q ss_pred ceeEEEeeCccceeecceEEE
Q 007953 126 DIFHCFYDGTWSTIKHSFTIV 146 (583)
Q Consensus 126 kf~HCf~DGTwsTI~GSCTVV 146 (583)
+..+|- ||+||.-.-.|..|
T Consensus 49 ~~~~C~-~g~Ws~~~P~C~~i 68 (68)
T 1srz_A 49 SRSVCS-QGQWSTPKPHCQVN 68 (68)
T ss_dssp CEEEEE-TTEESSCCCCEEEC
T ss_pred CcCEEC-CCEEeCCCCEeeEC
Confidence 578998 99999887788754
No 62
>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A*
Probab=20.71 E-value=1.2e+02 Score=27.49 Aligned_cols=16 Identities=19% Similarity=0.100 Sum_probs=13.1
Q ss_pred hcccceeEEecccchh
Q 007953 44 TIGNSAIILGLLPAHV 59 (583)
Q Consensus 44 ~iGnsaVIlgLwP~Hv 59 (583)
.+|-|++|.|+.=+.+
T Consensus 107 ~vGaSGai~gl~g~~~ 122 (181)
T 2xov_A 107 FGGLSGVVYALMGYVW 122 (181)
T ss_dssp CCCSHHHHHHHHHHHH
T ss_pred ceeHHHHHHHHHHHHH
Confidence 7899999999987543
Done!