BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007955
(583 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q0D3J9|C3H53_ORYSJ Zinc finger CCCH domain-containing protein 53 OS=Oryza sativa
subsp. japonica GN=Os07g0682400 PE=2 SV=1
Length = 682
Score = 473 bits (1217), Expect = e-132, Method: Compositional matrix adjust.
Identities = 315/600 (52%), Positives = 375/600 (62%), Gaps = 113/600 (18%)
Query: 1 MDGYEATRIVFSRIQNLDPENASKIMGLLLLQDHGEKEMIRLAFGPEALVHSVILKARKE 60
MD YEAT++VFSRIQ LDP++A+KIMG LL+QDHGEKEMIRLAFGPEAL+H+V+ KARKE
Sbjct: 1 MDAYEATKVVFSRIQALDPDHAAKIMGFLLIQDHGEKEMIRLAFGPEALLHTVMAKARKE 60
Query: 61 L-VRASNSPNSPSTPSSP-----SPF-LARQNSS------------------SSRLLGSN 95
L + ++ P +P++ ++ SPF L+RQNS + N
Sbjct: 61 LGLLPASGPGTPTSVAAAAAAAHSPFMLSRQNSGRCGTAPSPLSVSSPSSWAPPPVFSRN 120
Query: 96 NLPPLTIPSGTSWSTAVTDLPNPDDLIPQTTTTMNSSALPFYGNGTGSGSSDVIDEYQLQ 155
N +I +G D+LI + PF+G ++DE QLQ
Sbjct: 121 N----SISNGAGEEMVGLG----DELI--SPANGGGPPSPFFGG------DPLMDELQLQ 164
Query: 156 DQLSFLNESSQNLGNKNQDLFYPSQMDLSSSPPNGATDSMLFPSY---WGGGSSVHRRSC 212
DQL+FLNE G++ D G D LF SY W G HRRS
Sbjct: 165 DQLAFLNEGGVPAGHQM------PMFDGGECRSPGGGDGGLF-SYNLGWANGGPGHRRSA 217
Query: 213 SVSDVLGSSSDDLNSGLGWRPCLYFARGYCKNGSSCRFVHGGETGSGNLMGSDGAATLVG 272
SVS++ +D GLGW+PCLY+ARGYCKNGS+CRFVHGG + D A +
Sbjct: 218 SVSELCLGGAD----GLGWKPCLYYARGYCKNGSACRFVHGG-------LPDDAAGKM-- 264
Query: 273 SPSKMEPIDHCHE-LLRSKSAAAAQVQQQRLAAASQLMGSSSFPYSPK------------ 319
PS +E C + L+RSKS QRLAAA+ FPYSP
Sbjct: 265 DPSAVE--QQCQDFLIRSKS--------QRLAAAA-------FPYSPTGSLPGSPSAATK 307
Query: 320 --SMNLFLQQQQNDTQRAAAAAALMLNED-MHKF-GRSRLERNDFSINGSAGIVNPASRQ 375
S+ L QQQQN++QRAAAAAALML D HKF GR RLER DF A ++NP SRQ
Sbjct: 308 CLSLLLQQQQQQNESQRAAAAAALMLGGDEAHKFMGRPRLERADF-----ASMMNPGSRQ 362
Query: 376 IYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPH 435
IYLTFPADSTFREEDVSNYFSIYGPV DVRIPYQQKRMFGFVTFVYPETVK+ILAKGNPH
Sbjct: 363 IYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPH 422
Query: 436 FVCDARVLVKPYKEKGKVPDKYRKQQQQVERGEFSPCGTPTGLDSRDPFDL-QLGARMFY 494
F+CDARVLVKPYKEKGKVPDKYRKQ Q ER +FS C TPTGLD+RDPFD+ QLGARM
Sbjct: 423 FICDARVLVKPYKEKGKVPDKYRKQHQPGERVDFSSCTTPTGLDARDPFDMHQLGARMLQ 482
Query: 495 --NNTQDMLWRRK---MEEQADLQQALELQSRRLMGLQLLDVKKHHHHRALSTGSPIPSP 549
N+ +ML RRK ++ A+LQQA+EL SRRLMGLQLLD K RA + +PI +P
Sbjct: 483 HSNSANEMLLRRKLEEQQQAAELQQAIELHSRRLMGLQLLDFKS----RAAAAPTPIGNP 538
>sp|Q10M00|C3H22_ORYSJ Zinc finger CCCH domain-containing protein 22 OS=Oryza sativa
subsp. japonica GN=Os03g0328900 PE=2 SV=2
Length = 688
Score = 473 bits (1217), Expect = e-132, Method: Compositional matrix adjust.
Identities = 302/572 (52%), Positives = 370/572 (64%), Gaps = 87/572 (15%)
Query: 1 MDGYEATRIVFSRIQNLDPENASKIMGLLLLQDHGEKEMIRLAFGPEALVHSVILKARKE 60
MD YEAT++VFSRIQ LDP++A+KIMGLLL+QDHG+KEMIRLAFGPEAL+HSV+ +ARKE
Sbjct: 1 MDAYEATKVVFSRIQALDPDHAAKIMGLLLIQDHGDKEMIRLAFGPEALLHSVMAQARKE 60
Query: 61 LV----RASNSPNSPSTPSSPSPFL-ARQNSSSSRLLGSNNLPPLTIPSGTSWSTA---- 111
L S +SP+ P++ SPFL +RQNS + L + S +SW+ A
Sbjct: 61 LALLPPPPPPSSSSPTVPAAHSPFLLSRQNSGRGPAPSPSPL---SASSPSSWAQAQPFS 117
Query: 112 -----VTDLPNP-DDLIPQTTTTMNSSA--LPFYGNGTGSGSSDVI-DEYQLQDQLSFLN 162
V ++ ++LI + ++A PF+ G DV+ D++QLQ+QL+FLN
Sbjct: 118 RSNGSVDEVVGAGEELISPANSGGGAAANAPPFFPRG-----GDVLLDDFQLQEQLAFLN 172
Query: 163 ESSQNLGNKNQDLFYPSQMDLSSSPPNGATDSMLFPSYWGGGSSVHRRSCSVSDV-LGSS 221
E N + Q + S P + W G HRRS SV+++ LG
Sbjct: 173 EGGVNPSHPLQGF---DGAECRSPGPGEGGGMFPYGLGWANGGPGHRRSASVNELCLGGG 229
Query: 222 SDDLNSGLGWRPCLYFARGYCKNGSSCRFVHGGETGSGNLMGSDGAATLVGSPSKMEPID 281
S D G GW+PCLY+ARG+CKNGSSCRFVHG D AA L G+
Sbjct: 230 SSD---GFGWKPCLYYARGFCKNGSSCRFVHG-----------DDAAALTGAA------- 268
Query: 282 HCHELLRSKSAAAAQVQQQRLAAASQLMGSSSFPYSP------------KSMNLFLQQQQ 329
+ + +A Q Q L + SQ +G ++FPYSP K ++L LQQQ
Sbjct: 269 -----MDAATAEQQQCQDFLLRSKSQRLGPAAFPYSPTGSLPGSPSAATKCLSLLLQQQH 323
Query: 330 NDTQRAAAAAALML--NEDMHKF-GRSRLERNDFSINGSAGIVNPASRQIYLTFPADSTF 386
ND QRAAAAAALML +++ HKF GR RL+R DF A ++NP SRQIYLTFPADSTF
Sbjct: 324 NDNQRAAAAAALMLGGSDEAHKFMGRPRLDRVDF-----ASMMNPGSRQIYLTFPADSTF 378
Query: 387 REEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446
REEDVSNYFSIYGPV DVRIPYQQKRMFGFVTFVYPETVK+ILAKGNPHF+CDARVLVKP
Sbjct: 379 REEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFICDARVLVKP 438
Query: 447 YKEKGKVPDKYRKQQQQVERGEFSPCGTPTGLDSRDPFDL-QLGARMFY--NNTQDMLWR 503
YKEKGKVPDKYRK Q G+FS C TPTGLD RDPFDL QLGARM N+T +M+ R
Sbjct: 439 YKEKGKVPDKYRKHQ-----GDFSGCTTPTGLDGRDPFDLHQLGARMLQHSNSTNEMMLR 493
Query: 504 RK---MEEQADLQQALELQSRRLMGLQLLDVK 532
RK ++ A+LQQA+EL SRRLM LQLLD+K
Sbjct: 494 RKLEEQQQAAELQQAIELHSRRLMDLQLLDLK 525
>sp|Q9SV09|C3H46_ARATH Zinc finger CCCH domain-containing protein 46 OS=Arabidopsis
thaliana GN=At3g51950 PE=1 SV=1
Length = 540
Score = 451 bits (1160), Expect = e-126, Method: Compositional matrix adjust.
Identities = 296/570 (51%), Positives = 338/570 (59%), Gaps = 150/570 (26%)
Query: 1 MDGYEATRIVFSRIQNLDPENASKIMGLLLLQDHGEKEMIRLAFGPEALVHSVILKARKE 60
MDGYEATRIV SRIQ+LDPENASKIMGLLLLQDHGEKEMIRLAFGPE LVHSVI+KA+KE
Sbjct: 1 MDGYEATRIVLSRIQSLDPENASKIMGLLLLQDHGEKEMIRLAFGPETLVHSVIVKAKKE 60
Query: 61 L--VRASNSPNSPSTPSSPSPFLARQNSSSSRLLGSNNLPPLTIPSGTSWSTAVTDLPNP 118
L + S SP WS +
Sbjct: 61 LGLMNCSRSP---------------------------------------WS-------HQ 74
Query: 119 DDLI-PQTT--TTMNSSALPFYGNGTGSGSSDVIDEYQLQDQLSFLNESSQNLGNKNQDL 175
D+LI P+ +++N ++LPFY NG G S D+ ++++L D ++ + S+ LG
Sbjct: 75 DELISPKNNRGSSLNPASLPFYANG-GRSSRDLTNDFELMDDMN--SRSTDFLG------ 125
Query: 176 FYPSQMDLSSSPPNGATDSMLFPSYWGGGSSVHRRSCS-VSDVLGSSSDDLNSGLGWRPC 234
SVH RS S V D LG D + G G PC
Sbjct: 126 ------------------------------SVHARSGSCVLDGLGYGGDS-DLGFGGVPC 154
Query: 235 LYFARGYCKNGSSCRFVHGGETGSGNLMGSDGAATLVGSPSKMEPIDHCHELLRSKSAAA 294
YFARG+CKNG+SCRFVH SDG A LVGSPS++E LLRS S
Sbjct: 155 SYFARGFCKNGASCRFVH-----------SDGGADLVGSPSRIE-------LLRSNSVPP 196
Query: 295 AQVQQQRLAAASQLMGSSSFP-YSPKSMNLFLQQQQNDTQRAAAAAALMLNEDMHKFGRS 353
RLA M SS P +S K +NL QQND QRAAAA LM+ +++ K GR
Sbjct: 197 ------RLA--HHFMTRSSLPSFSTKGVNL----QQNDVQRAAAA--LMIGDELQKLGRW 242
Query: 354 RLERNDFSINGSAGIVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRM 413
R ER D S + PASRQIYLTFPADS FREEDVSNYFS +GPVQDVRIPYQQKRM
Sbjct: 243 RPERIDLS-----AMACPASRQIYLTFPADSRFREEDVSNYFSTFGPVQDVRIPYQQKRM 297
Query: 414 FGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEKGKVPDKYRKQQQQVERGEFSPCG 473
FGFVTFVYPETVK ILAKGNPHFVCD+RVLVKPYKEKGKVPDKYR Q ER E S
Sbjct: 298 FGFVTFVYPETVKSILAKGNPHFVCDSRVLVKPYKEKGKVPDKYR-TNQTTER-ELS--- 352
Query: 474 TPTGLDSRDPFDLQLGARMFYNNTQDMLWRRKMEEQADLQQALELQSRRLMGLQLLDVKK 533
PTGLDS P D+ LG R FYNNTQD+LWR K EE + LELQSRRLM LQLLDVKK
Sbjct: 353 -PTGLDS-SPRDV-LGGRGFYNNTQDVLWRSKFEE-----EILELQSRRLMNLQLLDVKK 404
Query: 534 HHHHRALSTGSPIPSPTHSPNIFHQNLVFP 563
H + P+ HSPN F Q+L+ P
Sbjct: 405 HFQLNS-------PTNIHSPNPFSQSLISP 427
>sp|Q10LZ9|C3H23_ORYSJ Zinc finger CCCH domain-containing protein 23 OS=Oryza sativa
subsp. japonica GN=Os03g0329200 PE=2 SV=1
Length = 677
Score = 446 bits (1147), Expect = e-124, Method: Compositional matrix adjust.
Identities = 291/589 (49%), Positives = 372/589 (63%), Gaps = 93/589 (15%)
Query: 1 MDGYEATRIVFSRIQNLDPENASKIMGLLLLQDHGEKEMIRLAFGPEALVHSVILKARKE 60
MD YEAT++VFSRIQ LDP++A+KIMGLLL+QDHG+KEMIRLAFGPEAL+HSV+ +ARKE
Sbjct: 1 MDAYEATKVVFSRIQALDPDHAAKIMGLLLIQDHGDKEMIRLAFGPEALLHSVMAQARKE 60
Query: 61 LV-----RASNSPNSPSTPSSPSPFL-ARQNSSSSRLLGSNNLPPLTIPSGTSWSTA--- 111
L +A++S SP+ P++ SPFL +RQNS PS +SW+ A
Sbjct: 61 LALLPPPQAASS--SPTVPAAHSPFLLSRQNSGR-----------CPAPSPSSWAQAQPF 107
Query: 112 -----VTDLPNPDDLIPQTTTTMN---------SSALPFYGNGTGSGSSDVIDEYQLQDQ 157
+ + D+++ M+ ++A PF+ G + ++D+++LQ+Q
Sbjct: 108 SRSNSMGNGGAADEMVGAGEELMSPLNGGGGAAANAPPFFPRGGDA----LLDDFELQEQ 163
Query: 158 LSFLNESSQNLGNKNQDLFYPSQMDLSSSPPNGATDSMLFPSYWGGGSSVHRRSCSVSDV 217
L+FL++ + + N L + S P + + + W G HRRS SV+++
Sbjct: 164 LAFLHDGAGGV-NPGHALQAFDGAECRSPGPGESGGMLPYGLAWANGGPGHRRSASVNEL 222
Query: 218 -LGSSSDDLNSGLGWRPCLYFARGYCKNGSSCRFVHGGETGSGNLMGSDGAATLVGSPSK 276
LG G GW+PCLY+ARG+CKNGS+CRFVHGG SD AA + +
Sbjct: 223 CLG------GDGFGWKPCLYYARGFCKNGSTCRFVHGGL--------SDDAAMDATTAEQ 268
Query: 277 MEPIDHCHELLRSKSAAAAQVQQQRLA-AASQLMGSSSFPYSPKSMNLFLQQQ------Q 329
+ D LLRSKS QRL AA + S P SP + + L
Sbjct: 269 QQCQDF---LLRSKS--------QRLGPAAFPFTPTGSLPASPSATSKCLSLLLQQQQQH 317
Query: 330 NDTQRAAAAAALMLNED-MHKF-GRSRLERNDFSINGSAGIVNPASRQIYLTFPADSTFR 387
ND QRAAAAA ++ D HKF GR RL+R DF A ++NP SRQIYLTFPADSTFR
Sbjct: 318 NDNQRAAAAALMLAGGDEAHKFMGRPRLDRVDF-----ASMMNPGSRQIYLTFPADSTFR 372
Query: 388 EEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447
EEDVSNYFSIYGPV DVRIPYQQKRMFGFVTFVYPETVK+ILAKGNPHF+CDARVLVKPY
Sbjct: 373 EEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFICDARVLVKPY 432
Query: 448 KEKGKVPDKYRKQQQQVERGEFSPCGTPTGLDSRDPFDL-QLGARMFY--NNTQDMLWRR 504
KEKGKVPDKYRKQQQ G+F C +PTGLD+RDPFD QLGARM N+ +++ RR
Sbjct: 433 KEKGKVPDKYRKQQQ----GDFC-CMSPTGLDARDPFDFHQLGARMLQHSNSANELMLRR 487
Query: 505 K---MEEQADLQQALELQSRRLMGLQLLDVKKHHH-HRALSTGSPIPSP 549
K ++ A+LQQA++L SRRL+GLQLLD+K H A +T +P+P
Sbjct: 488 KLEEQQQAAELQQAIDLHSRRLIGLQLLDLKSSAAVHAAETTTMSLPTP 536
>sp|Q94CJ8|C3H55_ARATH Zinc finger CCCH domain-containing protein 55 OS=Arabidopsis
thaliana GN=At5g12440 PE=2 SV=3
Length = 650
Score = 313 bits (801), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 192/415 (46%), Positives = 255/415 (61%), Gaps = 47/415 (11%)
Query: 138 GNGTGSGSSDVIDEYQLQDQLSFLNESSQNLGNKNQDLFYPSQMDLSSSPPNGATDSMLF 197
G+ +G +D++D+ QL D LSFL++S +K +DL PS P + + D
Sbjct: 156 GSADAAGGADLLDDQQLNDCLSFLDDSC----SKTEDLVDPS------IPLDYSVDG--- 202
Query: 198 PSYWGGGSSVHRRSCSVSDVLGSSSDDLNSGLGWRPCLYFARGYCKNGSSCRFVHGGETG 257
G + +HRRS S S D G G +PC+YF+RG CKNG SC+F+HGG
Sbjct: 203 ----DGETHLHRRSFSCDASFVSGDDGF--GGGCKPCVYFSRGLCKNGESCKFIHGGYPD 256
Query: 258 SGNLMGSDGAATLVGSPSKMEPIDHCHE-LLRSKSAAAAQVQQQRLAAASQLMGSS-SFP 315
+ DG + SP KME HE ++R K A QQQRLA SQ++G + P
Sbjct: 257 N-----MDGNGIVADSPRKMENFVRQHEEMMRLKLA----YQQQRLA--SQILGRAPQLP 305
Query: 316 YSPKSMNLFLQQQQNDTQRAAAAAALMLNEDMHKFGRSRLERNDFSINGSAGIVNPASRQ 375
Y K M+ LQQ QR +E RLER + +++ N ASRQ
Sbjct: 306 YE-KRMDFLLQQH---AQRDGGLP--FGDERFWSSSPGRLERMELAMH-LGDQSNSASRQ 358
Query: 376 IYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPH 435
IYLTFPADSTF++EDV+ YFS++G VQDVRIPYQQKRMFGFV+F +PETVK++LA+GNPH
Sbjct: 359 IYLTFPADSTFKDEDVATYFSLFGTVQDVRIPYQQKRMFGFVSFAHPETVKVVLARGNPH 418
Query: 436 FVCDARVLVKPYKEKGKVPDK--YRKQQQQVERGEFSPCGTPTGLDSRDPFDLQLGARMF 493
F+CD+RVLVKPYKEKGKV DK + QQQ+ERG +SPC +P+G+D R+ D LG++M
Sbjct: 419 FICDSRVLVKPYKEKGKVLDKKQQQLLQQQIERGNYSPCSSPSGIDPREQSDFHLGSKML 478
Query: 494 YNNTQDMLWRRKMEEQADLQQALELQSRRLMGLQLLDVKKH---HHHRALSTGSP 545
Y + + RRK+ EQADL +A+EL+ RR + LQL + K +HHR+ S GSP
Sbjct: 479 YERRE--MMRRKI-EQADLLRAIELERRRFINLQLPEFKNSVTLNHHRSFSVGSP 530
>sp|Q9SJ41|C3H18_ARATH Zinc finger CCCH domain-containing protein 18 OS=Arabidopsis
thaliana GN=At2g05160 PE=2 SV=1
Length = 536
Score = 159 bits (403), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 99/242 (40%), Positives = 133/242 (54%), Gaps = 31/242 (12%)
Query: 234 CLYFARGYCKNGSSCRFVHG---------GETGSGNLMGSDGAATLVGSPSKMEPID-HC 283
C YF +G+CK+G++CR+ HG + + N SD V SP +E ++
Sbjct: 162 CHYFNKGFCKHGNNCRYFHGQIIPERESFAQMFNPNNNLSDEEH--VVSPVSLEKLEGEI 219
Query: 284 HELLRSKSAAAAQVQQ----------QRLAAASQLMGSSSFPYSPKSMNLFLQQQQNDTQ 333
ELL+ + A + + L A L S + S+ L + +N +
Sbjct: 220 IELLKLRRGAPISIASLPMMYYEKYGRTLQAEGYLTESQRHGKAGYSLTKLLARLKNTIR 279
Query: 334 ---RAAAAAALMLNEDMHKFGRSRLERNDFSINGSAGIVNPASRQIYLTFPADSTFREED 390
R +++L ED KF ERN+ G + SRQIYLTFPA+S+F E D
Sbjct: 280 LVDRPHGQHSVILAEDASKFVEYTGERNE------HGAILAGSRQIYLTFPAESSFTEHD 333
Query: 391 VSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEK 450
VS YF+ YG V+DVRIP QQKRM+GFVTF ETVK ILAKGNPHF+C+ARVLVKPY+EK
Sbjct: 334 VSIYFTSYGHVEDVRIPCQQKRMYGFVTFASSETVKHILAKGNPHFICNARVLVKPYREK 393
Query: 451 GK 452
+
Sbjct: 394 SR 395
Score = 72.4 bits (176), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 57/80 (71%), Gaps = 1/80 (1%)
Query: 1 MDGYEATRIVFSRIQNLDPENASKIMG-LLLLQDHGEKEMIRLAFGPEALVHSVILKARK 59
M+ E+ +V +RIQ L+PENA+KI G LLL+Q++G ++MIRLAF P++++ SVI +
Sbjct: 1 MNFTESMNVVHARIQQLEPENAAKIFGYLLLMQENGNRDMIRLAFCPDSVMCSVINCVKY 60
Query: 60 ELVRASNSPNSPSTPSSPSP 79
EL R S+ +SP + P+P
Sbjct: 61 ELARNSHHYHSPPSDHIPTP 80
>sp|Q6ZK57|C3H54_ORYSJ Zinc finger CCCH domain-containing protein 54 OS=Oryza sativa
subsp. japonica GN=Os08g0126700 PE=2 SV=2
Length = 653
Score = 149 bits (375), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 92/245 (37%), Positives = 126/245 (51%), Gaps = 24/245 (9%)
Query: 232 RPCLYFARGYCKNGSSCRFVH--------GGETGSGNLMGSDGAATLVGSPSKMEPIDHC 283
RPC YF++G CKNG +C + H G +G++ GS +E
Sbjct: 264 RPCHYFSKGICKNGQNCHYSHHQVYQDALAGAAINGDVYNHQPGGVTPGSLETLE--MEI 321
Query: 284 HELLRSKSAAAAQVQQ----------QRLAAASQLMGSSSFPYSPKSMNLFLQQ--QQND 331
ELL S+ + + L A L S + S+ L + +
Sbjct: 322 TELLNSRRGQPVSIASLPTLYGEKYGKGLQADGYLTESQRHGKAGYSLTRLLSRLNKIRV 381
Query: 332 TQRAAAAAALMLNEDMHKFGRSRLERNDFSINGSAGIVNPASRQIYLTFPADSTFREEDV 391
+R +++L ED K+ R + G V +S QIYLTFPA+STF E+DV
Sbjct: 382 IERPHGQHSVVLAEDAAKYMDFRGGGGGGGGD--TGSVPASSHQIYLTFPAESTFAEDDV 439
Query: 392 SNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEKG 451
+NYF YGPV+DVRIP Q++RMFGFV+F PETV IL + NPHF+C +RVLVKPY+EK
Sbjct: 440 ANYFGQYGPVRDVRIPCQERRMFGFVSFQSPETVSTILMRRNPHFICGSRVLVKPYREKS 499
Query: 452 KVPDK 456
K D+
Sbjct: 500 KCVDR 504
Score = 53.5 bits (127), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 41/62 (66%)
Query: 1 MDGYEATRIVFSRIQNLDPENASKIMGLLLLQDHGEKEMIRLAFGPEALVHSVILKARKE 60
M+ E ++ F+R+Q ++PE+ KI G++LL++ E E+++LA+GPEA + + I +
Sbjct: 50 MEVPELVKLAFARVQRVEPEHVGKIFGVMLLREPDEDELVQLAYGPEATLLAKIEDTKAA 109
Query: 61 LV 62
L
Sbjct: 110 LT 111
>sp|Q84ZT0|C3H51_ORYSJ Putative zinc finger CCCH domain-containing protein 51 OS=Oryza
sativa subsp. japonica GN=Os07g0583300 PE=4 SV=1
Length = 513
Score = 116 bits (290), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 50/82 (60%), Positives = 63/82 (76%)
Query: 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAK 431
S QIY+TFP S F ++DV NYF +GPV VRIPYQ+KRMFGFV+F+Y ETV++IL+K
Sbjct: 323 GSNQIYMTFPVHSKFTDDDVENYFKQFGPVSGVRIPYQEKRMFGFVSFLYTETVRLILSK 382
Query: 432 GNPHFVCDARVLVKPYKEKGKV 453
G HF+C RVLVK Y EK ++
Sbjct: 383 GTAHFICGLRVLVKRYMEKSEL 404
Score = 33.5 bits (75), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 235 LYFARGYCKNGSSCRFVHG 253
+F RGYCK G +C+F HG
Sbjct: 184 FHFFRGYCKKGVNCQFFHG 202
>sp|Q54PB2|MRD1_DICDI Multiple RNA-binding domain-containing protein 1 OS=Dictyostelium
discoideum GN=mrd1 PE=3 SV=1
Length = 895
Score = 53.1 bits (126), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 55/105 (52%), Gaps = 9/105 (8%)
Query: 361 SINGSAGIVN-PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGF 416
SI + G N P+S+ I P +ST +E + F+ YG +Q VRIP + R FGF
Sbjct: 782 SIKSNGGQPNKPSSKIIIKNLPFESTIKE--IRKLFTAYGEIQSVRIPKKPNGGHRGFGF 839
Query: 417 VTFVYPETVKIIL-AKGNPHFVCDARVLVKPYKEKGKVPDKYRKQ 460
V F+ E K + A GN HF R LV Y E+ K D+ R++
Sbjct: 840 VEFLTEEEAKNAMEALGNSHFY--GRHLVLQYAEQDKNIDELREK 882
>sp|Q8W034|RNP1_ARATH Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana
GN=RNP1 PE=1 SV=1
Length = 411
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 72/189 (38%), Gaps = 11/189 (5%)
Query: 262 MGSDGAATLVGSPSKMEPIDHCHE-LLRSKSAAAAQVQQQRLAAASQLMGSSSFPYSPKS 320
M SD VG S D E + A V + +L + G F P
Sbjct: 1 MDSDQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFS-DPSV 59
Query: 321 MNLFLQQQQNDTQRAAAAAALMLNEDMHKFGRSRLERNDFSINGSAGIVNPASRQIYLTF 380
++ LQ++ + R M E+ GR+ S G A N +
Sbjct: 60 LDRVLQEKHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDA--YNKTKKIFVGGL 117
Query: 381 PADSTFREEDVSNYFSIYGPVQDVRIPYQQK----RMFGFVTFVYPETVKIILAKGNPHF 436
P T +E+ YF +YGPV DV I Y Q R FGFV+F + V +L K H
Sbjct: 118 PP--TLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHK-TFHD 174
Query: 437 VCDARVLVK 445
+ +V VK
Sbjct: 175 LSGKQVEVK 183
>sp|Q75K81|C3H36_ORYSJ Zinc finger CCCH domain-containing protein 36 OS=Oryza sativa
subsp. japonica GN=Os05g0497500 PE=2 SV=1
Length = 703
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 215 SDVLGSSS--DDLNSGLGWRPCLYFARGYCKNGSSCRFVHGGE-TGSGNLMGSDGAATLV 271
S GSSS D+ + R C ++A+G CKNG SC F+H GE +GS N + + T
Sbjct: 161 SQRFGSSSPGGDMKNKTRKRTCTFYAQGRCKNGKSCTFLHEGEVSGSDNQVYGNHGGTGE 220
Query: 272 GS 273
GS
Sbjct: 221 GS 222
>sp|Q6C007|CWC2_YARLI Pre-mRNA-splicing factor CWC2 OS=Yarrowia lipolytica (strain CLIB
122 / E 150) GN=CWC2 PE=3 SV=1
Length = 382
Score = 43.9 bits (102), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 10/83 (12%)
Query: 178 PSQMDLSSSPPNGATDSMLFPSYWGGGSSVHRR--------SCSVSDVLGSSSDDLNSGL 229
P ++ PP T ++ + W GG + CS++ G + D G
Sbjct: 67 PDSVNTDDRPPQTGTVYNIWFNKWSGGDKEDEKFNQKKADGRCSIARDSGYTRADKVPGS 126
Query: 230 GWRPCLYFARGYCKNGSSCRFVH 252
+ CLYFARG C G C F+H
Sbjct: 127 YF--CLYFARGLCTQGHKCEFLH 147
>sp|Q51TF7|CWC2_MAGO7 Pre-mRNA-splicing factor CWC2 OS=Magnaporthe oryzae (strain 70-15 /
ATCC MYA-4617 / FGSC 8958) GN=CWC2 PE=3 SV=2
Length = 394
Score = 41.6 bits (96), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 10/77 (12%)
Query: 184 SSSPPNGATDSMLFPSYWGGGS--------SVHRRSCSVSDVLGSSSDDLNSGLGWRPCL 235
S PP T ++ + W GG + + C+V+ G + D +G + CL
Sbjct: 54 SEPPPQTGTTFNIWYNKWSGGDREDKYTSQTAAKGRCNVAKDSGYTKADQTTGSYF--CL 111
Query: 236 YFARGYCKNGSSCRFVH 252
+FARG C G C ++H
Sbjct: 112 FFARGVCPKGQDCEYLH 128
>sp|P87126|CWC2_SCHPO Pre-mRNA-splicing factor cwf2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=cwf2 PE=1 SV=2
Length = 388
Score = 41.6 bits (96), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 10/65 (15%)
Query: 196 LFPSYWGGG-------SSVHRRS-CSVSDVLGSSSDDLNSGLGWRPCLYFARGYCKNGSS 247
L+ + W GG S V + C +S G + D N G + CLYFARG C GS
Sbjct: 73 LWYNKWSGGMRQDPLKSQVKSETRCVISRDSGYTKADKNPGSFF--CLYFARGMCSEGSK 130
Query: 248 CRFVH 252
C ++H
Sbjct: 131 CEYLH 135
>sp|Q98SJ2|DAZP1_XENLA DAZ-associated protein 1 OS=Xenopus laevis GN=dazap1 PE=1 SV=1
Length = 360
Score = 40.8 bits (94), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 383 DSTFREEDVSNYFSIYGPVQDVRI----PYQQKRMFGFVTFVYPETVKIILAKGNPHFVC 438
D + +E + +YFS YG V D I Q R FGFV F P V +LA PH +
Sbjct: 18 DWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLD 76
Query: 439 DARVLVKPYKEKGKVPDKYRKQQ 461
+ KP +G P++ R ++
Sbjct: 77 GRNIDPKPCTPRGMQPERSRPRE 99
>sp|Q9JII5|DAZP1_MOUSE DAZ-associated protein 1 OS=Mus musculus GN=Dazap1 PE=2 SV=2
Length = 406
Score = 40.8 bits (94), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 383 DSTFREEDVSNYFSIYGPVQDVRI----PYQQKRMFGFVTFVYPETVKIILAKGNPHFVC 438
D + +E + +YFS YG V D I Q R FGFV F P V +LA PH +
Sbjct: 18 DWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLD 76
Query: 439 DARVLVKPYKEKGKVPDKYRKQQ 461
+ KP +G P++ R ++
Sbjct: 77 GRNIDPKPCTPRGMQPERTRPKE 99
>sp|Q96EP5|DAZP1_HUMAN DAZ-associated protein 1 OS=Homo sapiens GN=DAZAP1 PE=1 SV=1
Length = 407
Score = 40.4 bits (93), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 383 DSTFREEDVSNYFSIYGPVQDVRI----PYQQKRMFGFVTFVYPETVKIILAKGNPHFVC 438
D + +E + +YFS YG V D I Q R FGFV F P V +LA PH +
Sbjct: 18 DWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLD 76
Query: 439 DARVLVKPYKEKGKVPDKYRKQQ 461
+ KP +G P++ R ++
Sbjct: 77 GRNIDPKPCTPRGMQPERTRPKE 99
>sp|Q84VG7|C3H27_ARATH Zinc finger CCCH domain-containing protein 27 OS=Arabidopsis
thaliana GN=FES1 PE=2 SV=2
Length = 587
Score = 40.0 bits (92), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 233 PCLYFARGYCKNGSSCRFVHGGE 255
PC +FA+G+C NG SC+F+H E
Sbjct: 101 PCKFFAKGWCFNGVSCKFLHVKE 123
>sp|P48809|RB27C_DROME Heterogeneous nuclear ribonucleoprotein 27C OS=Drosophila
melanogaster GN=Hrb27C PE=1 SV=2
Length = 421
Score = 39.7 bits (91), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 14/77 (18%)
Query: 388 EEDVSNYFSIYGPVQDVRIPYQQK----RMFGFVTFVYPETVKIILAKGNPHFV------ 437
+E++S YF +G + D + + R FGFVTF P V +L G PH +
Sbjct: 20 QENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQNG-PHTLDGRTID 78
Query: 438 ---CDARVLVKPYKEKG 451
C+ R L KP K G
Sbjct: 79 PKPCNPRTLQKPKKGGG 95
>sp|P53927|NOP15_YEAST Ribosome biogenesis protein 15 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=NOP15 PE=1 SV=1
Length = 220
Score = 38.1 bits (87), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Query: 386 FREEDVSNYFSIYGPVQDVRIPYQQK----RMFGFVTFVYPETVKIILAKGNPHFVCDAR 441
F E+++S YF+ +G +++VR+ +K R +GF+ FV E I N + +
Sbjct: 102 FHEKELSKYFAQFGDLKEVRLARNKKTGNSRHYGFLEFVNKEDAMIAQESMNNYLLMGHL 161
Query: 442 VLVKPYKEKGKVPDKYR-KQQQQVERGEFSPC 472
+ V+ + K+ Y+ K++ VE+G P
Sbjct: 162 LQVRVLPKGAKIEKLYKYKKRVLVEKGITKPV 193
>sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5
PE=1 SV=3
Length = 682
Score = 38.1 bits (87), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 42/193 (21%), Positives = 84/193 (43%), Gaps = 30/193 (15%)
Query: 324 FLQQQQNDTQRAAAAA--ALMLNEDMHKFGRSRLERNDFSINGSAGIVNPASRQIYL-TF 380
F+Q ++ +T +AA ++LN D F + R D + + S + P+ +Y+
Sbjct: 190 FVQFEKEETAQAAIDKLNGMLLN-DKQVFVGHFVRRQDRARSESGAV--PSFTNVYVKNL 246
Query: 381 PADSTFREEDVSNYFSIYGPVQDVRIPYQQK---RMFGFVTFVYPETVKIILAKGNPHFV 437
P + T ++++ F YG + + Q R FGFV FV PE + + K N +
Sbjct: 247 PKEIT--DDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGISL 304
Query: 438 CDARVLVKPYKEKGKVPDKYRK--QQQQVERGEFSPCGTPTGLDSRDPFDLQLGARMFYN 495
+ + V ++K ++ R+ +Q+++ R F+ G+ ++
Sbjct: 305 GEDVLYVGRAQKKSDREEELRRKFEQERISR-----------------FEKLQGSNLYLK 347
Query: 496 NTQDMLWRRKMEE 508
N D + K++E
Sbjct: 348 NLDDSVNDEKLKE 360
>sp|Q6FNR8|CWC2_CANGA Pre-mRNA-splicing factor CWC2 OS=Candida glabrata (strain ATCC 2001
/ CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=CWC2
PE=3 SV=1
Length = 306
Score = 37.7 bits (86), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 231 WRPCLYFARGYCKNGSSCRFVH 252
W+ CLYFARG C G C ++H
Sbjct: 67 WKFCLYFARGLCALGHKCEYLH 88
>sp|Q8WXF0|SRS12_HUMAN Serine/arginine-rich splicing factor 12 OS=Homo sapiens GN=SRSF12
PE=2 SV=1
Length = 261
Score = 37.7 bits (86), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 49/108 (45%), Gaps = 12/108 (11%)
Query: 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIP---YQQK-RMFGFVTFVYPET 424
P + +++ AD+T R ED+ F YGP+ DV IP Y ++ R F +V F
Sbjct: 5 TRPPNTSLFIRNVADAT-RPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRD 63
Query: 425 VKIILAKGNPHFVCDARVLVKPYKEKGKVPDKYRKQQQQVERGEFSPC 472
+ L N +VC ++ ++ + K P Q++ E PC
Sbjct: 64 AEDALYNLNRKWVCGRQIEIQFAQGDRKTPG-------QMKSKERHPC 104
>sp|Q9USY2|YOW4_SCHPO Uncharacterized RNA-binding protein C1861.04c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC1861.04c PE=4 SV=1
Length = 1014
Score = 37.7 bits (86), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 374 RQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIP--YQQKRMFGFVT 418
R++Y+T D E+DV +F YG V+ VRIP + Q + FG+V
Sbjct: 757 RELYVT-NIDFKVNEKDVETFFRDYGQVESVRIPKRFNQHKGFGYVV 802
>sp|Q8R3C6|RBM19_MOUSE Probable RNA-binding protein 19 OS=Mus musculus GN=Rbm19 PE=1 SV=1
Length = 952
Score = 37.4 bits (85), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Query: 385 TFREEDVSNYFSIYGPVQDVRIPY----QQKRMFGFVTFVYPE 423
T EED+ FS YGP+ ++ P ++ + F FVTF++PE
Sbjct: 410 TSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPE 452
>sp|Q0P678|ZCH18_MOUSE Zinc finger CCCH domain-containing protein 18 OS=Mus musculus
GN=Zc3h18 PE=1 SV=1
Length = 948
Score = 37.4 bits (85), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 234 CLYFARGYCKNGSSCRFVHGGETGSGN 260
C +F +G C G SCRF+H G GN
Sbjct: 220 CRFFMKGNCTWGMSCRFIHPGVNDKGN 246
>sp|Q09167|SRSF5_RAT Serine/arginine-rich splicing factor 5 OS=Rattus norvegicus
GN=Srsf5 PE=2 SV=1
Length = 269
Score = 37.0 bits (84), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Query: 387 REEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445
RE+DV +F YG ++D+ + KR FGFV F P + + + +C RV ++
Sbjct: 16 REKDVERFFKGYGRIRDIDL----KRGFGFVEFEDPRDADDAVYELDGKELCSERVTIE 70
>sp|O35326|SRSF5_MOUSE Serine/arginine-rich splicing factor 5 OS=Mus musculus GN=Srsf5
PE=1 SV=2
Length = 269
Score = 37.0 bits (84), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Query: 387 REEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445
RE+DV +F YG ++D+ + KR FGFV F P + + + +C RV ++
Sbjct: 16 REKDVERFFKGYGRIRDIDL----KRGFGFVEFEDPRDADDAVYELDGKELCSERVTIE 70
>sp|Q13243|SRSF5_HUMAN Serine/arginine-rich splicing factor 5 OS=Homo sapiens GN=SRSF5
PE=1 SV=1
Length = 272
Score = 37.0 bits (84), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Query: 387 REEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445
RE+DV +F YG ++D+ + KR FGFV F P + + + +C RV ++
Sbjct: 16 REKDVERFFKGYGRIRDIDL----KRGFGFVEFEDPRDADDAVYELDGKELCSERVTIE 70
>sp|Q0J952|C3H32_ORYSJ Zinc finger CCCH domain-containing protein 32 OS=Oryza sativa
subsp. japonica GN=Os04g0671800 PE=2 SV=1
Length = 711
Score = 37.0 bits (84), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 18/36 (50%)
Query: 225 LNSGLGWRPCLYFARGYCKNGSSCRFVHGGETGSGN 260
NSG PC YF +G C G C F HG ++ N
Sbjct: 109 FNSGKQLVPCYYFKKGNCLKGDRCAFYHGPQSVGNN 144
>sp|Q4WU07|CWC2_ASPFU Pre-mRNA-splicing factor cwc2 OS=Neosartorya fumigata (strain ATCC
MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=cwc2 PE=3
SV=1
Length = 414
Score = 37.0 bits (84), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 10/77 (12%)
Query: 184 SSSPPNGATDSMLFPSYWGGGSSVHR--------RSCSVSDVLGSSSDDLNSGLGWRPCL 235
S PP T ++ + W GG + C+++ G + D G + CL
Sbjct: 79 SEPPPQTGTVFNIWYNKWSGGDREDKYLSKHAAPSRCNIAKDSGYTRADKVPGSYF--CL 136
Query: 236 YFARGYCKNGSSCRFVH 252
+FARG C G C ++H
Sbjct: 137 FFARGVCPKGHECEYLH 153
>sp|Q9Y4C8|RBM19_HUMAN Probable RNA-binding protein 19 OS=Homo sapiens GN=RBM19 PE=1 SV=3
Length = 960
Score = 36.6 bits (83), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Query: 385 TFREEDVSNYFSIYGPVQDVRIPY----QQKRMFGFVTFVYPE 423
T EED+ FS YGP+ ++ P ++ + F F+TF++PE
Sbjct: 412 TSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPE 454
>sp|Q5BB35|CWC2_EMENI Pre-mRNA-splicing factor cwc2 OS=Emericella nidulans (strain FGSC
A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=cwc2
PE=3 SV=1
Length = 417
Score = 36.6 bits (83), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 10/77 (12%)
Query: 184 SSSPPNGATDSMLFPSYWGGGSSVHR--------RSCSVSDVLGSSSDDLNSGLGWRPCL 235
S PP T ++ + W GG + C+++ G + D G + CL
Sbjct: 84 SEPPPQTGTVFNIWYNKWSGGDREDKYLSKTAAPSRCNIARDSGYTRADKVRGSYF--CL 141
Query: 236 YFARGYCKNGSSCRFVH 252
+FARG C G C ++H
Sbjct: 142 FFARGICPKGHECEYLH 158
>sp|Q10145|YAS9_SCHPO Uncharacterized RNA-binding protein C3H8.09c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC3H8.09c PE=4 SV=1
Length = 738
Score = 36.6 bits (83), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 68/154 (44%), Gaps = 11/154 (7%)
Query: 316 YSPKSMNLFLQQQQND-TQRAAAAAALMLN-EDMHKFGRSRLERNDFSINGSAGIVNPAS 373
YSP+++ L + Q + AA +L +N ED +F + + N G AS
Sbjct: 304 YSPENLQLNHEAQNVEYLGNNAAEKSLQMNLEDEQRFQQFLKDEESIMSNWYPGQFPSAS 363
Query: 374 RQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGN 433
R ++L + + ++ F IYGP+ + + K +GFV F E L
Sbjct: 364 R-LFLGHLNTKSLSKRNLWKVFKIYGPLAQIVL----KANYGFVQFFTNEDCARALNAEQ 418
Query: 434 PHFVCDARVLVKPYKEKGKVPDKYRKQQQQVERG 467
+FV ++ + E K+ KY+ Q + +++G
Sbjct: 419 GNFVRGQKL----HLEISKIQKKYQNQIENMKKG 448
>sp|Q6T412|CWC2_LEPMC Pre-mRNA-splicing factor CWC2 OS=Leptosphaeria maculans GN=CWC2
PE=3 SV=1
Length = 421
Score = 36.2 bits (82), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 11/83 (13%)
Query: 178 PSQMDLSSSPPNGATDSMLFPSYWGGGS--------SVHRRSCSVSDVLGSSSDDLNSGL 229
P+ + P G + ++ + + W GG + + C+V+ G + D G
Sbjct: 71 PATFKTDTPAPTGTSFNIWY-NKWSGGDREDKYLSQTAAQGRCNVARDSGYTKADKTPGS 129
Query: 230 GWRPCLYFARGYCKNGSSCRFVH 252
+ CL+FARG C G C ++H
Sbjct: 130 YF--CLFFARGICPKGVDCEYLH 150
>sp|Q6TQE1|ZCH18_RAT Zinc finger CCCH domain-containing protein 18 OS=Rattus norvegicus
GN=Zc3h18 PE=1 SV=1
Length = 947
Score = 35.8 bits (81), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 234 CLYFARGYCKNGSSCRFVHGGETGSGN 260
C +F +G C G +CRF+H G GN
Sbjct: 219 CRFFMKGNCTWGMNCRFIHPGVNDKGN 245
>sp|Q86VM9|ZCH18_HUMAN Zinc finger CCCH domain-containing protein 18 OS=Homo sapiens
GN=ZC3H18 PE=1 SV=2
Length = 953
Score = 35.8 bits (81), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 234 CLYFARGYCKNGSSCRFVHGGETGSGN 260
C +F +G C G +CRF+H G GN
Sbjct: 224 CRFFMKGNCTWGMNCRFIHPGVNDKGN 250
>sp|Q8GW05|C3H47_ORYSJ Zinc finger CCCH domain-containing protein 47 OS=Oryza sativa
subsp. japonica GN=Os07g0138400 PE=2 SV=1
Length = 388
Score = 35.8 bits (81), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 224 DLNSGLGWRPC--LYFARGYCKNGSSCRFVHGG 254
++ G G RPC L A+G+C+ G +C++ HGG
Sbjct: 355 EMRVGGGGRPCPELAAAKGWCRYGLNCKYCHGG 387
>sp|Q9FIV6|DGP10_ARATH Protease Do-like 10, mitochondrial OS=Arabidopsis thaliana
GN=DEGP10 PE=2 SV=1
Length = 586
Score = 35.4 bits (80), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 240 GYCKNGSSCRFVHGGETGSGNLMGSDGAATLVGSPSKMEPIDHCHELLRSKSAAAA 295
G+C G SC+ + GE SG M S+ LV SK+ P+ H++L+ A
Sbjct: 313 GFCSMGVSCQPMENGELRSGFQMSSEMTGVLV---SKINPLSDAHKILKKDDVLLA 365
>sp|Q925G0|RBM3_RAT Putative RNA-binding protein 3 OS=Rattus norvegicus GN=Rbm3 PE=1
SV=2
Length = 155
Score = 35.0 bits (79), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 8/56 (14%)
Query: 378 LTFPADSTFREEDVSNYFSIYGPVQDVRI----PYQQKRMFGFVTFVYPETVKIIL 429
L F D E+ + ++FS +GP+ +V + Q+ R FGF+TF PE ++
Sbjct: 13 LNFNTD----EQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDVM 64
>sp|P98179|RBM3_HUMAN Putative RNA-binding protein 3 OS=Homo sapiens GN=RBM3 PE=1 SV=1
Length = 157
Score = 35.0 bits (79), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 8/56 (14%)
Query: 378 LTFPADSTFREEDVSNYFSIYGPVQDVRI----PYQQKRMFGFVTFVYPETVKIIL 429
L F D E+ + ++FS +GP+ +V + Q+ R FGF+TF PE + +
Sbjct: 13 LNFNTD----EQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAM 64
>sp|Q920Q6|MSI2H_MOUSE RNA-binding protein Musashi homolog 2 OS=Mus musculus GN=Msi2 PE=1
SV=1
Length = 346
Score = 35.0 bits (79), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 6/59 (10%)
Query: 389 EDVSNYFSIYGPVQD---VRIPYQQK-RMFGFVTFVYPETVKIILAKGNPHFVCDARVL 443
+ + +YFS +G +++ +R P ++ R FGFVTF P +V +L G PH D++ +
Sbjct: 35 DSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVL--GQPHHELDSKTI 91
>sp|Q96DH6|MSI2H_HUMAN RNA-binding protein Musashi homolog 2 OS=Homo sapiens GN=MSI2 PE=1
SV=1
Length = 328
Score = 35.0 bits (79), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 6/59 (10%)
Query: 389 EDVSNYFSIYGPVQD---VRIPYQQK-RMFGFVTFVYPETVKIILAKGNPHFVCDARVL 443
+ + +YFS +G +++ +R P ++ R FGFVTF P +V +L G PH D++ +
Sbjct: 35 DSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVL--GQPHHELDSKTI 91
>sp|Q6CT50|CWC2_KLULA Pre-mRNA-splicing factor CWC2 OS=Kluyveromyces lactis (strain ATCC
8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 /
WM37) GN=CWC2 PE=3 SV=1
Length = 337
Score = 35.0 bits (79), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 234 CLYFARGYCKNGSSCRFVH 252
CLYFA+G C G +CR++H
Sbjct: 74 CLYFAKGMCCLGKNCRYLH 92
>sp|Q9TT91|MKRN1_MACEU E3 ubiquitin-protein ligase makorin-1 OS=Macropus eugenii GN=MKRN1
PE=2 SV=1
Length = 478
Score = 34.7 bits (78), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 34/84 (40%), Gaps = 11/84 (13%)
Query: 234 CLYFARGYCKNGSSCRFVHGGETGSGNLMGS--DGAATLVGSPSKMEPIDHCHELLRSKS 291
C YF G CK G++CR+ H T ++ G + E H L R +
Sbjct: 57 CRYFMHGVCKKGNNCRYSHDLSTSQSAMVCRYYQRGCCAYGDRCRYE---HTKPLKREEV 113
Query: 292 AAAAQVQQQRLAAASQLMGSSSFP 315
AA LAA S L SSS P
Sbjct: 114 TAA------NLAAKSDLPASSSLP 131
>sp|Q9VVE5|MSIR6_DROME RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster
GN=Rbp6 PE=2 SV=3
Length = 369
Score = 34.7 bits (78), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 4/35 (11%)
Query: 389 EDVSNYFSIYGPVQDVRIPYQQK----RMFGFVTF 419
EDV +YF +GP++D + + ++ R FGFVTF
Sbjct: 132 EDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTF 166
>sp|A5DTS1|DUS3_LODEL tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Lodderomyces
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 /
NBRC 1676 / NRRL YB-4239) GN=DUS3 PE=3 SV=1
Length = 642
Score = 34.7 bits (78), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
Query: 202 GGGSSVHRRSCSVSDVLGSSSDDLNSGLGWRPC-LYFARGYCKNGSSCRFVH 252
GG+ + S ++ + L + SDD+ C +Y A GYC +G CR++H
Sbjct: 120 AGGAENCKYSHNIEEYLAAKSDDIEG-----TCPVYEALGYCPSGLKCRWLH 166
>sp|P62997|TRA2B_RAT Transformer-2 protein homolog beta OS=Rattus norvegicus GN=Tra2b
PE=1 SV=1
Length = 288
Score = 34.7 bits (78), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 388 EEDVSNYFSIYGPVQDVRIPYQQ--KRMFGFVTFVYPETV 425
E D+ FS YGP+ DV I Y Q +R GF FVY E V
Sbjct: 131 ERDLREVFSKYGPIADVSIVYDQQSRRSRGFA-FVYFENV 169
>sp|P62996|TRA2B_MOUSE Transformer-2 protein homolog beta OS=Mus musculus GN=Tra2b PE=1
SV=1
Length = 288
Score = 34.7 bits (78), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 388 EEDVSNYFSIYGPVQDVRIPYQQ--KRMFGFVTFVYPETV 425
E D+ FS YGP+ DV I Y Q +R GF FVY E V
Sbjct: 131 ERDLREVFSKYGPIADVSIVYDQQSRRSRGFA-FVYFENV 169
>sp|P62995|TRA2B_HUMAN Transformer-2 protein homolog beta OS=Homo sapiens GN=TRA2B PE=1
SV=1
Length = 288
Score = 34.7 bits (78), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 388 EEDVSNYFSIYGPVQDVRIPYQQ--KRMFGFVTFVYPETV 425
E D+ FS YGP+ DV I Y Q +R GF FVY E V
Sbjct: 131 ERDLREVFSKYGPIADVSIVYDQQSRRSRGFA-FVYFENV 169
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.131 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 229,429,684
Number of Sequences: 539616
Number of extensions: 10405445
Number of successful extensions: 33478
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 144
Number of HSP's that attempted gapping in prelim test: 32767
Number of HSP's gapped (non-prelim): 571
length of query: 583
length of database: 191,569,459
effective HSP length: 123
effective length of query: 460
effective length of database: 125,196,691
effective search space: 57590477860
effective search space used: 57590477860
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)