Query 007955
Match_columns 583
No_of_seqs 410 out of 1712
Neff 5.1
Searched_HMMs 46136
Date Thu Mar 28 17:33:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007955.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007955hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03134 glycine-rich RNA-bind 99.6 1.4E-15 3.1E-20 142.4 12.0 85 368-453 29-117 (144)
2 KOG0153 Predicted RNA-binding 99.6 7.5E-16 1.6E-20 159.5 10.8 79 368-449 223-302 (377)
3 KOG0149 Predicted RNA-binding 99.5 7.9E-15 1.7E-19 145.6 6.7 77 370-448 9-89 (247)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.5 5.9E-14 1.3E-18 146.1 12.1 81 371-452 267-351 (352)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.5 1.6E-13 3.5E-18 142.9 10.8 80 372-452 2-85 (352)
6 PF00076 RRM_1: RNA recognitio 99.5 2.5E-13 5.5E-18 108.3 8.2 67 376-443 1-70 (70)
7 KOG0125 Ataxin 2-binding prote 99.4 1.7E-13 3.7E-18 141.4 8.4 79 371-450 94-174 (376)
8 TIGR01659 sex-lethal sex-letha 99.4 4.1E-13 8.9E-18 142.4 10.0 79 371-450 105-187 (346)
9 PLN03120 nucleic acid binding 99.4 9.6E-13 2.1E-17 133.8 11.1 77 373-451 4-81 (260)
10 TIGR01659 sex-lethal sex-letha 99.3 7.6E-12 1.7E-16 132.8 12.7 83 371-454 191-279 (346)
11 KOG0111 Cyclophilin-type pepti 99.3 9.4E-13 2E-17 129.9 4.0 82 371-453 8-93 (298)
12 TIGR01628 PABP-1234 polyadenyl 99.3 6.4E-12 1.4E-16 139.9 10.7 86 371-457 283-371 (562)
13 KOG0107 Alternative splicing f 99.3 5.9E-12 1.3E-16 120.8 8.2 79 372-452 9-87 (195)
14 TIGR01645 half-pint poly-U bin 99.3 9.2E-12 2E-16 140.0 10.9 79 372-451 203-285 (612)
15 PLN03213 repressor of silencin 99.3 6.7E-12 1.4E-16 134.9 9.2 77 373-450 10-88 (759)
16 TIGR01645 half-pint poly-U bin 99.3 1E-11 2.2E-16 139.7 10.0 77 372-449 106-186 (612)
17 PF14259 RRM_6: RNA recognitio 99.3 1.3E-11 2.8E-16 99.8 7.9 67 376-443 1-70 (70)
18 PLN03121 nucleic acid binding 99.3 1.8E-11 3.9E-16 123.2 10.5 77 371-449 3-80 (243)
19 KOG0148 Apoptosis-promoting RN 99.3 1.3E-11 2.8E-16 125.1 9.4 84 368-454 159-242 (321)
20 smart00362 RRM_2 RNA recogniti 99.3 2.6E-11 5.7E-16 94.7 9.2 70 375-445 1-72 (72)
21 KOG0113 U1 small nuclear ribon 99.3 1.8E-11 3.8E-16 125.4 10.4 78 371-449 99-180 (335)
22 KOG0148 Apoptosis-promoting RN 99.3 7.7E-12 1.7E-16 126.6 6.8 78 373-451 62-143 (321)
23 KOG0144 RNA-binding protein CU 99.2 9.1E-12 2E-16 132.4 6.6 87 371-458 122-214 (510)
24 KOG4207 Predicted splicing fac 99.2 2.1E-11 4.5E-16 119.7 7.8 78 371-449 11-92 (256)
25 TIGR01622 SF-CC1 splicing fact 99.2 4.6E-11 9.9E-16 129.3 11.3 80 371-451 184-267 (457)
26 TIGR01642 U2AF_lg U2 snRNP aux 99.2 6.3E-11 1.4E-15 129.7 12.1 80 371-451 293-376 (509)
27 COG0724 RNA-binding proteins ( 99.2 5.1E-11 1.1E-15 114.1 10.0 76 373-449 115-194 (306)
28 TIGR01628 PABP-1234 polyadenyl 99.2 3.6E-11 7.8E-16 134.0 10.3 74 375-449 2-79 (562)
29 KOG0122 Translation initiation 99.2 7.6E-11 1.7E-15 118.1 9.0 78 372-450 188-269 (270)
30 smart00360 RRM RNA recognition 99.2 1.1E-10 2.4E-15 90.6 8.0 67 378-445 1-71 (71)
31 TIGR01648 hnRNP-R-Q heterogene 99.2 7.3E-11 1.6E-15 132.4 9.8 77 371-448 56-136 (578)
32 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.2 1.1E-10 2.4E-15 128.5 11.0 78 371-450 273-351 (481)
33 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.2 1.2E-10 2.6E-15 128.3 10.5 75 373-450 2-78 (481)
34 TIGR01648 hnRNP-R-Q heterogene 99.2 1.3E-10 2.8E-15 130.5 10.9 77 372-453 232-310 (578)
35 TIGR01622 SF-CC1 splicing fact 99.2 1.3E-10 2.8E-15 125.8 10.6 78 370-449 86-167 (457)
36 KOG4205 RNA-binding protein mu 99.1 5.5E-11 1.2E-15 124.4 6.8 112 340-454 62-180 (311)
37 KOG0109 RNA-binding protein LA 99.1 1.8E-11 3.9E-16 125.0 1.9 127 374-516 3-129 (346)
38 cd00590 RRM RRM (RNA recogniti 99.1 5E-10 1.1E-14 87.8 9.5 71 375-446 1-74 (74)
39 KOG0126 Predicted RNA-binding 99.1 2.8E-11 6.1E-16 116.8 2.4 79 372-451 34-116 (219)
40 KOG0131 Splicing factor 3b, su 99.1 1.2E-10 2.5E-15 112.5 6.4 78 372-450 8-89 (203)
41 PF13893 RRM_5: RNA recognitio 99.1 4.1E-10 8.9E-15 88.2 7.7 56 391-447 1-56 (56)
42 KOG0117 Heterogeneous nuclear 99.1 8.1E-10 1.8E-14 118.2 11.9 79 370-449 80-163 (506)
43 KOG0121 Nuclear cap-binding pr 99.0 3.7E-10 8.1E-15 103.9 6.7 76 371-447 34-113 (153)
44 KOG0108 mRNA cleavage and poly 99.0 7.2E-10 1.6E-14 120.6 9.1 79 374-453 19-101 (435)
45 KOG0124 Polypyrimidine tract-b 99.0 9.5E-10 2.1E-14 115.2 9.2 78 374-452 114-195 (544)
46 KOG0114 Predicted RNA-binding 99.0 1.2E-09 2.6E-14 97.4 8.4 80 371-451 16-96 (124)
47 KOG4205 RNA-binding protein mu 99.0 2.3E-10 4.9E-15 119.8 4.2 80 372-453 5-88 (311)
48 smart00361 RRM_1 RNA recogniti 99.0 1.6E-09 3.5E-14 89.1 7.5 57 388-444 2-69 (70)
49 KOG0117 Heterogeneous nuclear 99.0 1.3E-09 2.8E-14 116.6 8.7 79 371-454 257-335 (506)
50 KOG0147 Transcriptional coacti 98.9 1.1E-09 2.4E-14 119.7 6.4 78 376-454 281-362 (549)
51 KOG0127 Nucleolar protein fibr 98.9 2.4E-09 5.3E-14 116.8 8.5 82 373-455 117-201 (678)
52 KOG0144 RNA-binding protein CU 98.9 3.1E-09 6.7E-14 113.4 8.3 83 370-453 31-120 (510)
53 KOG0105 Alternative splicing f 98.9 2.6E-09 5.7E-14 103.6 6.7 80 371-451 4-84 (241)
54 KOG0145 RNA-binding protein EL 98.9 5E-09 1.1E-13 106.0 8.7 77 373-450 278-358 (360)
55 KOG0132 RNA polymerase II C-te 98.9 3.5E-09 7.6E-14 119.2 8.3 84 368-454 416-499 (894)
56 TIGR01642 U2AF_lg U2 snRNP aux 98.9 6.8E-09 1.5E-13 113.8 9.8 78 368-449 170-259 (509)
57 KOG0145 RNA-binding protein EL 98.8 9.3E-09 2E-13 104.1 8.8 82 369-451 37-122 (360)
58 KOG0127 Nucleolar protein fibr 98.8 5.6E-09 1.2E-13 114.0 7.1 80 374-454 6-89 (678)
59 KOG0123 Polyadenylate-binding 98.8 1.4E-08 3E-13 109.0 7.5 77 376-454 79-157 (369)
60 KOG0109 RNA-binding protein LA 98.7 1.1E-08 2.3E-13 105.0 6.1 81 370-455 75-155 (346)
61 KOG0146 RNA-binding protein ET 98.7 1.4E-08 3E-13 103.2 6.4 82 372-454 18-105 (371)
62 KOG0130 RNA-binding protein RB 98.7 1.7E-08 3.7E-13 93.8 6.0 79 373-452 72-154 (170)
63 KOG4212 RNA-binding protein hn 98.7 3E-08 6.5E-13 106.0 8.3 78 369-447 40-121 (608)
64 KOG0131 Splicing factor 3b, su 98.7 1.9E-08 4.1E-13 97.4 6.2 83 371-454 94-181 (203)
65 KOG0415 Predicted peptidyl pro 98.6 7.9E-08 1.7E-12 100.8 8.6 81 368-449 234-318 (479)
66 KOG4206 Spliceosomal protein s 98.6 7.1E-08 1.5E-12 96.1 7.8 81 373-454 9-94 (221)
67 KOG0146 RNA-binding protein ET 98.5 7.1E-08 1.5E-12 98.1 4.9 82 371-453 283-368 (371)
68 KOG4661 Hsp27-ERE-TATA-binding 98.5 2E-07 4.4E-12 102.2 6.8 77 372-449 404-484 (940)
69 KOG0124 Polypyrimidine tract-b 98.4 3.5E-07 7.6E-12 96.3 6.5 78 371-449 208-289 (544)
70 KOG0110 RNA-binding protein (R 98.4 6.2E-07 1.3E-11 100.8 8.2 74 374-448 516-596 (725)
71 KOG0151 Predicted splicing reg 98.4 7E-07 1.5E-11 100.3 7.8 81 368-449 169-256 (877)
72 KOG0110 RNA-binding protein (R 98.3 3.9E-07 8.4E-12 102.4 4.7 80 372-452 612-695 (725)
73 KOG0123 Polyadenylate-binding 98.3 5.9E-07 1.3E-11 96.6 5.5 83 370-453 267-352 (369)
74 KOG4212 RNA-binding protein hn 98.3 1.3E-06 2.9E-11 93.7 7.3 78 367-447 530-608 (608)
75 KOG4208 Nucleolar RNA-binding 98.3 1.4E-06 3E-11 86.1 6.7 78 372-450 48-130 (214)
76 KOG4454 RNA binding protein (R 98.3 4.9E-07 1.1E-11 90.0 3.3 80 368-449 4-86 (267)
77 KOG0226 RNA-binding proteins [ 98.2 1.1E-06 2.4E-11 89.1 4.9 86 371-457 188-277 (290)
78 KOG0116 RasGAP SH3 binding pro 98.2 2.4E-06 5.1E-11 93.1 7.2 75 373-449 288-366 (419)
79 KOG0106 Alternative splicing f 98.2 1.5E-06 3.1E-11 87.1 4.4 71 374-449 2-72 (216)
80 KOG0533 RRM motif-containing p 98.1 9.3E-06 2E-10 82.8 8.7 80 369-449 79-161 (243)
81 KOG4209 Splicing factor RNPS1, 98.0 9.8E-06 2.1E-10 82.1 5.5 78 371-450 99-180 (231)
82 KOG2135 Proteins containing th 97.9 1.1E-05 2.4E-10 87.7 4.4 83 366-451 365-447 (526)
83 KOG4660 Protein Mei2, essentia 97.7 2.3E-05 5E-10 86.6 3.8 72 370-443 72-143 (549)
84 KOG1457 RNA binding protein (c 97.5 0.00032 7E-09 70.5 8.3 82 372-454 33-122 (284)
85 KOG1548 Transcription elongati 97.5 0.00023 5.1E-09 75.1 7.5 77 371-448 132-219 (382)
86 PF00642 zf-CCCH: Zinc finger 97.4 2.6E-05 5.6E-10 53.6 -0.3 23 231-253 3-26 (27)
87 KOG0147 Transcriptional coacti 97.2 0.00017 3.6E-09 79.9 2.2 76 371-448 177-256 (549)
88 PF04059 RRM_2: RNA recognitio 97.2 0.002 4.2E-08 57.4 8.2 77 374-451 2-88 (97)
89 KOG4211 Splicing factor hnRNP- 97.1 0.0015 3.3E-08 71.8 8.6 78 371-451 8-87 (510)
90 KOG0106 Alternative splicing f 97.0 0.00039 8.4E-09 69.9 3.0 70 371-445 97-166 (216)
91 smart00356 ZnF_C3H1 zinc finge 97.0 0.00032 6.9E-09 47.2 1.6 22 232-253 5-26 (27)
92 KOG1190 Polypyrimidine tract-b 97.0 0.002 4.3E-08 69.5 8.3 76 373-449 297-372 (492)
93 PF14605 Nup35_RRM_2: Nup53/35 97.0 0.002 4.3E-08 51.0 5.7 52 374-429 2-53 (53)
94 COG5175 MOT2 Transcriptional r 96.9 0.0021 4.5E-08 68.0 6.8 80 371-450 112-203 (480)
95 KOG4210 Nuclear localization s 96.8 0.00062 1.4E-08 71.2 2.6 79 373-453 184-267 (285)
96 PF11608 Limkain-b1: Limkain b 96.8 0.005 1.1E-07 53.7 7.1 71 374-451 3-78 (90)
97 KOG1548 Transcription elongati 96.6 0.011 2.3E-07 63.0 9.9 84 368-451 260-353 (382)
98 KOG0120 Splicing factor U2AF, 96.6 0.0017 3.7E-08 72.3 4.1 80 372-452 288-371 (500)
99 PF08777 RRM_3: RNA binding mo 96.5 0.0049 1.1E-07 55.4 5.4 55 375-432 3-57 (105)
100 PF05172 Nup35_RRM: Nup53/35/4 96.4 0.017 3.7E-07 51.7 8.1 71 373-448 6-90 (100)
101 KOG0120 Splicing factor U2AF, 96.2 0.012 2.5E-07 65.8 7.3 61 389-449 424-491 (500)
102 KOG4211 Splicing factor hnRNP- 96.1 0.029 6.3E-07 62.0 10.0 76 371-448 101-180 (510)
103 KOG0129 Predicted RNA-binding 96.1 0.016 3.5E-07 64.2 7.8 76 371-448 368-452 (520)
104 KOG0129 Predicted RNA-binding 96.1 0.012 2.6E-07 65.3 6.7 60 371-432 257-326 (520)
105 PF14608 zf-CCCH_2: Zinc finge 96.0 0.0036 7.9E-08 39.8 1.3 18 233-252 1-18 (19)
106 PF00658 PABP: Poly-adenylate 95.9 0.0074 1.6E-07 51.0 3.5 50 8-60 22-71 (72)
107 KOG4206 Spliceosomal protein s 95.9 0.029 6.4E-07 56.6 8.2 77 370-448 143-220 (221)
108 KOG4307 RNA binding protein RB 95.9 0.017 3.6E-07 66.0 7.1 81 371-452 432-516 (944)
109 KOG1995 Conserved Zn-finger pr 95.7 0.013 2.9E-07 62.4 4.8 82 370-452 63-156 (351)
110 KOG2314 Translation initiation 95.6 0.02 4.4E-07 64.1 6.0 74 373-448 58-142 (698)
111 KOG2185 Predicted RNA-processi 95.3 0.0065 1.4E-07 65.7 1.1 26 230-255 139-164 (486)
112 KOG1456 Heterogeneous nuclear 95.1 0.096 2.1E-06 56.5 9.1 79 371-450 285-363 (494)
113 smart00517 PolyA C-terminal do 95.1 0.014 3E-07 48.4 2.2 51 8-61 11-61 (64)
114 KOG1855 Predicted RNA-binding 95.1 0.018 3.9E-07 62.8 3.6 63 371-434 229-308 (484)
115 KOG3152 TBP-binding protein, a 95.1 0.013 2.9E-07 60.1 2.3 69 372-441 73-157 (278)
116 PF08952 DUF1866: Domain of un 95.0 0.12 2.6E-06 49.4 8.4 76 368-449 22-106 (146)
117 KOG1457 RNA binding protein (c 94.9 0.026 5.7E-07 57.1 4.1 67 370-437 207-273 (284)
118 KOG2202 U2 snRNP splicing fact 94.6 0.016 3.5E-07 59.4 1.8 59 389-447 83-145 (260)
119 KOG4849 mRNA cleavage factor I 94.4 0.049 1.1E-06 58.1 4.8 75 373-448 80-160 (498)
120 KOG1677 CCCH-type Zn-finger pr 94.1 0.022 4.8E-07 60.0 1.5 28 228-255 174-202 (332)
121 PF10309 DUF2414: Protein of u 92.5 0.67 1.4E-05 38.3 7.4 55 373-432 5-62 (62)
122 KOG1190 Polypyrimidine tract-b 92.5 0.26 5.6E-06 53.8 6.4 77 371-448 412-489 (492)
123 KOG1996 mRNA splicing factor [ 92.4 0.3 6.6E-06 51.3 6.6 62 388-449 300-366 (378)
124 KOG4307 RNA binding protein RB 91.6 0.62 1.4E-05 53.8 8.3 73 373-446 867-943 (944)
125 KOG0105 Alternative splicing f 91.4 0.62 1.3E-05 46.4 7.1 75 371-449 113-189 (241)
126 KOG4676 Splicing factor, argin 90.6 0.42 9.2E-06 52.0 5.6 77 374-452 8-91 (479)
127 KOG0115 RNA-binding protein p5 90.2 0.19 4E-06 52.0 2.4 74 374-448 32-112 (275)
128 KOG2068 MOT2 transcription fac 89.9 0.1 2.3E-06 55.4 0.3 81 372-452 76-165 (327)
129 KOG0128 RNA-binding protein SA 89.5 0.16 3.5E-06 59.5 1.5 76 372-448 735-813 (881)
130 KOG0128 RNA-binding protein SA 89.5 0.049 1.1E-06 63.6 -2.6 66 372-438 666-735 (881)
131 KOG1039 Predicted E3 ubiquitin 89.5 0.13 2.8E-06 55.4 0.6 23 232-254 9-31 (344)
132 KOG4285 Mitotic phosphoprotein 88.7 0.87 1.9E-05 48.2 6.0 62 387-451 209-271 (350)
133 KOG0112 Large RNA-binding prot 87.7 0.13 2.8E-06 60.5 -0.8 79 369-448 368-449 (975)
134 KOG1456 Heterogeneous nuclear 87.5 1.8 3.9E-05 47.1 7.5 66 383-450 131-199 (494)
135 KOG1365 RNA-binding protein Fu 87.3 0.84 1.8E-05 49.7 4.9 68 375-444 163-237 (508)
136 PF04847 Calcipressin: Calcipr 87.2 2 4.2E-05 42.6 7.2 63 387-451 8-72 (184)
137 PF15023 DUF4523: Protein of u 86.8 2.9 6.4E-05 40.2 7.7 73 370-447 83-159 (166)
138 KOG2193 IGF-II mRNA-binding pr 86.5 0.57 1.2E-05 51.4 3.3 77 374-453 2-79 (584)
139 KOG1365 RNA-binding protein Fu 86.3 0.86 1.9E-05 49.6 4.4 76 372-448 279-360 (508)
140 KOG0112 Large RNA-binding prot 86.2 0.8 1.7E-05 54.3 4.5 82 371-455 453-536 (975)
141 KOG2891 Surface glycoprotein [ 85.4 0.86 1.9E-05 47.8 3.8 36 372-408 148-195 (445)
142 KOG2416 Acinus (induces apopto 85.4 0.97 2.1E-05 51.5 4.5 82 364-448 435-520 (718)
143 COG5084 YTH1 Cleavage and poly 78.5 1.2 2.5E-05 47.0 1.8 24 232-255 135-159 (285)
144 KOG2494 C3H1-type Zn-finger pr 77.8 0.72 1.6E-05 49.2 0.0 22 231-252 37-59 (331)
145 KOG1040 Polyadenylation factor 74.9 1.8 4E-05 46.4 2.1 27 228-254 74-100 (325)
146 PF08675 RNA_bind: RNA binding 72.9 10 0.00023 33.4 5.8 55 373-433 9-63 (87)
147 KOG4210 Nuclear localization s 71.5 2.3 4.9E-05 44.8 1.8 80 371-451 86-169 (285)
148 KOG1595 CCCH-type Zn-finger pr 69.7 2.2 4.8E-05 48.2 1.3 25 230-254 235-259 (528)
149 KOG1763 Uncharacterized conser 69.4 1.7 3.7E-05 45.9 0.3 22 233-254 94-115 (343)
150 KOG1492 C3H1-type Zn-finger pr 69.0 2.2 4.8E-05 43.5 1.0 22 232-253 207-229 (377)
151 PF10650 zf-C3H1: Putative zin 68.3 2.8 6E-05 28.3 1.0 19 233-252 2-21 (23)
152 KOG1040 Polyadenylation factor 66.7 2.2 4.7E-05 45.9 0.5 28 228-255 131-158 (325)
153 PF07576 BRAP2: BRCA1-associat 66.7 35 0.00076 31.2 8.2 65 373-438 13-80 (110)
154 PF03880 DbpA: DbpA RNA bindin 66.3 20 0.00044 29.9 6.2 59 384-447 11-74 (74)
155 KOG2253 U1 snRNP complex, subu 61.6 5.2 0.00011 46.3 2.3 72 370-447 37-108 (668)
156 PF03467 Smg4_UPF3: Smg-4/UPF3 59.3 9 0.0002 37.5 3.2 67 372-439 6-82 (176)
157 KOG4454 RNA binding protein (R 56.8 2.3 4.9E-05 43.5 -1.4 73 372-445 79-158 (267)
158 KOG2591 c-Mpl binding protein, 53.2 20 0.00044 41.1 5.0 66 375-444 177-246 (684)
159 KOG4574 RNA-binding protein (c 52.4 10 0.00022 45.2 2.7 76 371-449 296-373 (1007)
160 KOG0804 Cytoplasmic Zn-finger 44.0 60 0.0013 36.6 6.8 67 371-438 72-141 (493)
161 COG5063 CTH1 CCCH-type Zn-fing 40.5 13 0.00028 39.7 1.1 28 228-255 271-299 (351)
162 KOG4410 5-formyltetrahydrofola 39.7 1.1E+02 0.0024 32.7 7.6 56 366-423 323-378 (396)
163 COG5152 Uncharacterized conser 39.3 12 0.00025 37.9 0.5 22 232-253 142-164 (259)
164 KOG1677 CCCH-type Zn-finger pr 35.7 18 0.00039 38.2 1.2 28 228-255 129-158 (332)
165 KOG2494 C3H1-type Zn-finger pr 34.6 20 0.00042 38.7 1.3 23 230-253 70-92 (331)
166 COG5084 YTH1 Cleavage and poly 31.2 26 0.00056 37.2 1.5 26 230-255 103-128 (285)
167 KOG2318 Uncharacterized conser 30.6 1.4E+02 0.0031 34.7 7.2 73 371-444 172-300 (650)
168 COG5252 Uncharacterized conser 29.2 19 0.00041 37.3 0.1 23 232-254 86-108 (299)
169 PF11767 SET_assoc: Histone ly 27.9 3.6E+02 0.0078 22.6 7.5 56 384-444 10-65 (66)
170 PF15513 DUF4651: Domain of un 26.9 57 0.0012 27.2 2.5 18 389-406 9-26 (62)
171 KOG2202 U2 snRNP splicing fact 25.4 31 0.00068 36.0 0.9 23 230-252 151-173 (260)
172 KOG1492 C3H1-type Zn-finger pr 23.6 28 0.00061 35.7 0.2 21 232-253 262-282 (377)
173 KOG4660 Protein Mei2, essentia 23.0 85 0.0018 36.1 3.7 75 374-449 389-472 (549)
174 PF12186 AcylCoA_dehyd_C: Acyl 22.9 30 0.00065 32.0 0.2 15 23-37 64-78 (114)
175 KOG4676 Splicing factor, argin 22.7 23 0.00049 39.2 -0.7 64 373-438 151-214 (479)
176 KOG4791 Uncharacterized conser 20.2 33 0.00071 38.8 -0.1 23 232-254 119-141 (667)
177 COG0724 RNA-binding proteins ( 20.1 1.1E+02 0.0024 29.0 3.5 39 370-409 222-260 (306)
No 1
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.64 E-value=1.4e-15 Score=142.43 Aligned_cols=85 Identities=15% Similarity=0.274 Sum_probs=77.9
Q ss_pred CCCCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEE
Q 007955 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVL 443 (583)
Q Consensus 368 ~~~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~ 443 (583)
......++|||++| ++.+||++|+++|++||+|++|+|+.| ++||||||+|.+.++|++|++.||++.|+|+.|+
T Consensus 29 ~~~~~~~~lfVgnL-~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~ 107 (144)
T PLN03134 29 SLRLMSTKLFIGGL-SWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIR 107 (144)
T ss_pred cccCCCCEEEEeCC-CCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 44455789999999 999999999999999999999999987 6899999999999999999999999999999999
Q ss_pred EEecccCCCC
Q 007955 444 VKPYKEKGKV 453 (583)
Q Consensus 444 Vk~Ak~K~k~ 453 (583)
|+++.++...
T Consensus 108 V~~a~~~~~~ 117 (144)
T PLN03134 108 VNPANDRPSA 117 (144)
T ss_pred EEeCCcCCCC
Confidence 9999876543
No 2
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.64 E-value=7.5e-16 Score=159.51 Aligned_cols=79 Identities=22% Similarity=0.317 Sum_probs=72.6
Q ss_pred CCCCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEeccCCCceEEEEECCHHHHHHHHHhC-CCeEEcCeEEEEEe
Q 007955 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKG-NPHFVCDARVLVKP 446 (583)
Q Consensus 368 ~~~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~m-ng~~L~GR~V~Vk~ 446 (583)
..+.+.++||||+| ...++|.||+++|.+||+|+.|+|.. .++||||+|.++++|+.|.++. |...|+|++|.|.|
T Consensus 223 PeD~~I~tLyIg~l-~d~v~e~dIrdhFyqyGeirsi~~~~--~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~W 299 (377)
T KOG0153|consen 223 PEDTSIKTLYIGGL-NDEVLEQDIRDHFYQYGEIRSIRILP--RKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKW 299 (377)
T ss_pred CcccceeEEEeccc-ccchhHHHHHHHHhhcCCeeeEEeec--ccccceeeehhhHHHHHHHHhhcceeeecceEEEEEe
Confidence 34567899999999 77999999999999999999999988 7889999999999999998877 77888999999999
Q ss_pred ccc
Q 007955 447 YKE 449 (583)
Q Consensus 447 Ak~ 449 (583)
..+
T Consensus 300 g~~ 302 (377)
T KOG0153|consen 300 GRP 302 (377)
T ss_pred CCC
Confidence 888
No 3
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.53 E-value=7.9e-15 Score=145.65 Aligned_cols=77 Identities=14% Similarity=0.230 Sum_probs=72.0
Q ss_pred CCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEE
Q 007955 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (583)
Q Consensus 370 ~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk 445 (583)
+...+|||||+| +|+++.++|++||++||+|+++.|+.| ||||||||||++.++|.+|++. ...+|+||+..|+
T Consensus 9 DT~~TKifVggL-~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcn 86 (247)
T KOG0149|consen 9 DTTFTKIFVGGL-AWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCN 86 (247)
T ss_pred CceEEEEEEcCc-ccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccc
Confidence 456789999999 999999999999999999999999998 7999999999999999999999 6678999999999
Q ss_pred ecc
Q 007955 446 PYK 448 (583)
Q Consensus 446 ~Ak 448 (583)
.|.
T Consensus 87 lA~ 89 (247)
T KOG0149|consen 87 LAS 89 (247)
T ss_pred hhh
Confidence 874
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.52 E-value=5.9e-14 Score=146.10 Aligned_cols=81 Identities=20% Similarity=0.204 Sum_probs=75.7
Q ss_pred CCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 007955 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (583)
Q Consensus 371 ~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~ 446 (583)
...++|||+|| ++++++++|+++|++||.|++|+|++| ++||||||+|.+.++|.+|+..|||..|.||.|.|.+
T Consensus 267 ~~~~~lfV~NL-~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~ 345 (352)
T TIGR01661 267 GAGYCIFVYNL-SPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSF 345 (352)
T ss_pred CCCcEEEEeCC-CCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 33568999999 999999999999999999999999987 5899999999999999999999999999999999999
Q ss_pred cccCCC
Q 007955 447 YKEKGK 452 (583)
Q Consensus 447 Ak~K~k 452 (583)
+..|.+
T Consensus 346 ~~~~~~ 351 (352)
T TIGR01661 346 KTNKAY 351 (352)
T ss_pred ccCCCC
Confidence 988764
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.47 E-value=1.6e-13 Score=142.89 Aligned_cols=80 Identities=16% Similarity=0.326 Sum_probs=74.8
Q ss_pred CCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEec
Q 007955 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (583)
Q Consensus 372 ~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~A 447 (583)
...+|||++| +.+++|++|+++|++||+|.+|+|++| ++||||||+|.+.++|++|++.||+..|.|+.|.|.++
T Consensus 2 ~~~~l~V~nL-p~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a 80 (352)
T TIGR01661 2 SKTNLIVNYL-PQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYA 80 (352)
T ss_pred CCcEEEEeCC-CCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEee
Confidence 3689999999 999999999999999999999999987 58999999999999999999999999999999999998
Q ss_pred ccCCC
Q 007955 448 KEKGK 452 (583)
Q Consensus 448 k~K~k 452 (583)
+++..
T Consensus 81 ~~~~~ 85 (352)
T TIGR01661 81 RPSSD 85 (352)
T ss_pred ccccc
Confidence 76543
No 6
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.45 E-value=2.5e-13 Score=108.27 Aligned_cols=67 Identities=18% Similarity=0.397 Sum_probs=64.0
Q ss_pred EEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEE
Q 007955 376 IYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVL 443 (583)
Q Consensus 376 IYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D---ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~ 443 (583)
|||+|| +.++|+++|+++|++||.|..+.|+.+ +.+|||||+|.++++|++|++.++++.+.|+.|+
T Consensus 1 l~v~nl-p~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNL-PPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESE-TTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCC-CCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999 999999999999999999999999884 6899999999999999999999999999999885
No 7
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.44 E-value=1.7e-13 Score=141.39 Aligned_cols=79 Identities=23% Similarity=0.354 Sum_probs=74.8
Q ss_pred CCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc--CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEecc
Q 007955 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ--QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (583)
Q Consensus 371 ~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D--ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~Ak 448 (583)
...++|+|.|| ++++.|-||+..|++||+|.+|.|+.. -|||||||||++.++|++|-+++++..|.||+|.|..|.
T Consensus 94 ~~pkRLhVSNI-PFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~AT 172 (376)
T KOG0125|consen 94 DTPKRLHVSNI-PFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNAT 172 (376)
T ss_pred CCCceeEeecC-CccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccc
Confidence 34689999999 999999999999999999999999997 499999999999999999999999999999999999997
Q ss_pred cC
Q 007955 449 EK 450 (583)
Q Consensus 449 ~K 450 (583)
.+
T Consensus 173 ar 174 (376)
T KOG0125|consen 173 AR 174 (376)
T ss_pred hh
Confidence 65
No 8
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.43 E-value=4.1e-13 Score=142.41 Aligned_cols=79 Identities=15% Similarity=0.226 Sum_probs=74.5
Q ss_pred CCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 007955 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (583)
Q Consensus 371 ~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~ 446 (583)
...++|||++| ++++||++|+++|++||+|++|+|+.| ++||||||+|.++++|++|++.||+..|.+++|+|.+
T Consensus 105 ~~~~~LfVgnL-p~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~ 183 (346)
T TIGR01659 105 NSGTNLIVNYL-PQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSY 183 (346)
T ss_pred CCCcEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeec
Confidence 45789999999 999999999999999999999999987 5899999999999999999999999999999999999
Q ss_pred cccC
Q 007955 447 YKEK 450 (583)
Q Consensus 447 Ak~K 450 (583)
+++.
T Consensus 184 a~p~ 187 (346)
T TIGR01659 184 ARPG 187 (346)
T ss_pred cccc
Confidence 8764
No 9
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.41 E-value=9.6e-13 Score=133.84 Aligned_cols=77 Identities=19% Similarity=0.339 Sum_probs=71.8
Q ss_pred CcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEeccC-CCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEecccCC
Q 007955 373 SRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQ-KRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEKG 451 (583)
Q Consensus 373 ~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~Dk-sRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~Ak~K~ 451 (583)
.++|||+|| ++.+||++|+++|+.||+|++|+|+.|+ .+|||||+|.++++|+.|+. ||+..|.|+.|.|.++..-.
T Consensus 4 ~rtVfVgNL-s~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~~ 81 (260)
T PLN03120 4 VRTVKVSNV-SLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDYQ 81 (260)
T ss_pred CCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCCC
Confidence 589999999 9999999999999999999999999984 78999999999999999996 79999999999999986543
No 10
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.33 E-value=7.6e-12 Score=132.79 Aligned_cols=83 Identities=20% Similarity=0.269 Sum_probs=74.9
Q ss_pred CCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcC--eEEEE
Q 007955 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCD--ARVLV 444 (583)
Q Consensus 371 ~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~G--R~V~V 444 (583)
...++|||++| ++.+||++|+++|++||+|++|+|+.| ++||||||+|.+.++|++|++.||++.+.| +.|.|
T Consensus 191 ~~~~~lfV~nL-p~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V 269 (346)
T TIGR01659 191 IKDTNLYVTNL-PRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTV 269 (346)
T ss_pred cccceeEEeCC-CCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEE
Confidence 34678999999 999999999999999999999999987 578999999999999999999999999876 68999
Q ss_pred EecccCCCCc
Q 007955 445 KPYKEKGKVP 454 (583)
Q Consensus 445 k~Ak~K~k~~ 454 (583)
+++.++.+..
T Consensus 270 ~~a~~~~~~~ 279 (346)
T TIGR01659 270 RLAEEHGKAK 279 (346)
T ss_pred EECCcccccc
Confidence 9998765543
No 11
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=9.4e-13 Score=129.92 Aligned_cols=82 Identities=22% Similarity=0.323 Sum_probs=77.3
Q ss_pred CCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 007955 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (583)
Q Consensus 371 ~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~ 446 (583)
..+||||||+| ..+++|.-|...|-.||.|.+|.|+.| ++||||||+|...|+|.+|+..||..+|.||.|+|..
T Consensus 8 ~~KrtlYVGGl-adeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~ 86 (298)
T KOG0111|consen 8 NQKRTLYVGGL-ADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNL 86 (298)
T ss_pred ccceeEEeccc-hHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEee
Confidence 45899999999 889999999999999999999999998 8999999999999999999999999999999999999
Q ss_pred cccCCCC
Q 007955 447 YKEKGKV 453 (583)
Q Consensus 447 Ak~K~k~ 453 (583)
|+|.+-.
T Consensus 87 AkP~kik 93 (298)
T KOG0111|consen 87 AKPEKIK 93 (298)
T ss_pred cCCcccc
Confidence 9886543
No 12
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.31 E-value=6.4e-12 Score=139.93 Aligned_cols=86 Identities=20% Similarity=0.327 Sum_probs=78.5
Q ss_pred CCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEec
Q 007955 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (583)
Q Consensus 371 ~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D---ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~A 447 (583)
....+|||+|| ++++|+++|+++|++||+|++|+|+.| ++||||||+|.+.++|.+|+..||+..|.|+.|.|.+|
T Consensus 283 ~~~~~l~V~nl-~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a 361 (562)
T TIGR01628 283 AQGVNLYVKNL-DDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALA 361 (562)
T ss_pred cCCCEEEEeCC-CCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEec
Confidence 34678999999 999999999999999999999999987 68999999999999999999999999999999999999
Q ss_pred ccCCCCchHH
Q 007955 448 KEKGKVPDKY 457 (583)
Q Consensus 448 k~K~k~~~~~ 457 (583)
..+..+....
T Consensus 362 ~~k~~~~~~~ 371 (562)
T TIGR01628 362 QRKEQRRAHL 371 (562)
T ss_pred cCcHHHHHHH
Confidence 8877654443
No 13
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.30 E-value=5.9e-12 Score=120.75 Aligned_cols=79 Identities=20% Similarity=0.364 Sum_probs=73.1
Q ss_pred CCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEecccCC
Q 007955 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEKG 451 (583)
Q Consensus 372 ~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~Ak~K~ 451 (583)
..++|||||| ...+++.+|+..|+.||+|.+|.|.. ...|||||+|+++.+|+.|+..|++..|+|.+|.|+...-+.
T Consensus 9 ~~~kVYVGnL-~~~a~k~eLE~~F~~yG~lrsvWvAr-nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~ 86 (195)
T KOG0107|consen 9 GNTKVYVGNL-GSRATKRELERAFSKYGPLRSVWVAR-NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRP 86 (195)
T ss_pred CCceEEeccC-CCCcchHHHHHHHHhcCcceeEEEee-cCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCc
Confidence 3689999999 99999999999999999999999987 588999999999999999999999999999999999876544
Q ss_pred C
Q 007955 452 K 452 (583)
Q Consensus 452 k 452 (583)
.
T Consensus 87 r 87 (195)
T KOG0107|consen 87 R 87 (195)
T ss_pred c
Confidence 3
No 14
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.29 E-value=9.2e-12 Score=140.03 Aligned_cols=79 Identities=14% Similarity=0.237 Sum_probs=74.5
Q ss_pred CCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEec
Q 007955 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (583)
Q Consensus 372 ~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~A 447 (583)
..++|||+|| +.++++++|+++|+.||+|++|+|++| ++||||||+|.+.++|.+|++.||+..|+|+.|+|.++
T Consensus 203 ~~~rLfVgnL-p~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kA 281 (612)
T TIGR01645 203 KFNRIYVASV-HPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 281 (612)
T ss_pred ccceEEeecC-CCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEec
Confidence 4579999999 999999999999999999999999987 58999999999999999999999999999999999999
Q ss_pred ccCC
Q 007955 448 KEKG 451 (583)
Q Consensus 448 k~K~ 451 (583)
....
T Consensus 282 i~pP 285 (612)
T TIGR01645 282 VTPP 285 (612)
T ss_pred CCCc
Confidence 8644
No 15
>PLN03213 repressor of silencing 3; Provisional
Probab=99.29 E-value=6.7e-12 Score=134.88 Aligned_cols=77 Identities=17% Similarity=0.242 Sum_probs=72.9
Q ss_pred CcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEeccCCCceEEEEECCH--HHHHHHHHhCCCeEEcCeEEEEEecccC
Q 007955 373 SRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYP--ETVKIILAKGNPHFVCDARVLVKPYKEK 450 (583)
Q Consensus 373 ~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~DksRGfAFVtF~~~--e~A~~Al~~mng~~L~GR~V~Vk~Ak~K 450 (583)
..+|||||| .+.++++||+..|+.||.|.+|.|++...||||||+|... .++.+|++.||+..+.||.|+|..|++.
T Consensus 10 gMRIYVGNL-SydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP~ 88 (759)
T PLN03213 10 GVRLHVGGL-GESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKEH 88 (759)
T ss_pred ceEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccHH
Confidence 479999999 9999999999999999999999999888899999999987 7899999999999999999999999763
No 16
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.27 E-value=1e-11 Score=139.67 Aligned_cols=77 Identities=18% Similarity=0.430 Sum_probs=72.1
Q ss_pred CCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEec
Q 007955 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (583)
Q Consensus 372 ~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~A 447 (583)
..++|||||| +++++|++|+++|++||+|.+|+|+.| ++||||||+|.+.++|++|++.||++.|.||.|+|.+.
T Consensus 106 ~~~rLfVGnL-p~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 106 IMCRVYVGSI-SFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred CCCEEEEcCC-CCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 3579999999 999999999999999999999999987 69999999999999999999999999999999999865
Q ss_pred cc
Q 007955 448 KE 449 (583)
Q Consensus 448 k~ 449 (583)
..
T Consensus 185 ~~ 186 (612)
T TIGR01645 185 SN 186 (612)
T ss_pred cc
Confidence 43
No 17
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.27 E-value=1.3e-11 Score=99.85 Aligned_cols=67 Identities=33% Similarity=0.482 Sum_probs=61.2
Q ss_pred EEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEE
Q 007955 376 IYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVL 443 (583)
Q Consensus 376 IYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D---ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~ 443 (583)
|||+|| ++.+++++|+++|+.||.|..|++..+ +.+|+|||+|.++++|++|++..+++.++|+.|+
T Consensus 1 v~i~nl-p~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNL-PPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESS-TTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCC-CCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 799999 999999999999999999999999986 3689999999999999999999888999999885
No 18
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.27 E-value=1.8e-11 Score=123.16 Aligned_cols=77 Identities=21% Similarity=0.281 Sum_probs=71.3
Q ss_pred CCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc-CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEeccc
Q 007955 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ-QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (583)
Q Consensus 371 ~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D-ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~Ak~ 449 (583)
+...+|||+|| ++.+||++|+++|+.||+|.+|+|+.| +.+|||||+|.++++|+.|+. |+|..|.++.|.|.++..
T Consensus 3 ~~g~TV~V~NL-S~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 3 PGGYTAEVTNL-SPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWGQ 80 (243)
T ss_pred CCceEEEEecC-CCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCcc
Confidence 34579999999 999999999999999999999999998 677999999999999999995 599999999999999764
No 19
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=1.3e-11 Score=125.07 Aligned_cols=84 Identities=23% Similarity=0.263 Sum_probs=76.7
Q ss_pred CCCCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEec
Q 007955 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (583)
Q Consensus 368 ~~~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~A 447 (583)
...+++++|||||| ..-+||++|++.|+.||+|.+|||-+ -+||+||.|+++|.|..||..||+.+|.|..|++.|-
T Consensus 159 Qssp~NtsVY~G~I-~~~lte~~mr~~Fs~fG~I~EVRvFk--~qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWG 235 (321)
T KOG0148|consen 159 QSSPDNTSVYVGNI-ASGLTEDLMRQTFSPFGPIQEVRVFK--DQGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWG 235 (321)
T ss_pred cCCCCCceEEeCCc-CccccHHHHHHhcccCCcceEEEEec--ccceEEEEecchhhHHHHHHHhcCceeCceEEEEecc
Confidence 34578899999999 76899999999999999999999998 5899999999999999999999999999999999998
Q ss_pred ccCCCCc
Q 007955 448 KEKGKVP 454 (583)
Q Consensus 448 k~K~k~~ 454 (583)
++.....
T Consensus 236 Ke~~~~~ 242 (321)
T KOG0148|consen 236 KEGDDGI 242 (321)
T ss_pred ccCCCCC
Confidence 8765443
No 20
>smart00362 RRM_2 RNA recognition motif.
Probab=99.27 E-value=2.6e-11 Score=94.66 Aligned_cols=70 Identities=24% Similarity=0.421 Sum_probs=65.2
Q ss_pred EEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc--CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEE
Q 007955 375 QIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ--QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (583)
Q Consensus 375 tIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D--ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk 445 (583)
+|||++| +..+++++|+++|.+||+|..+++..+ .++|+|||+|.+.++|++|++.+++..+.|+.|.|+
T Consensus 1 ~v~i~~l-~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNL-PPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCC-CCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 5899999 999999999999999999999999885 367999999999999999999999999999999873
No 21
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.27 E-value=1.8e-11 Score=125.38 Aligned_cols=78 Identities=14% Similarity=0.320 Sum_probs=73.4
Q ss_pred CCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 007955 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (583)
Q Consensus 371 ~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~ 446 (583)
...+||||+.| +++++|..|+++|+.||+|..|+||+| ++||||||+|+++.+...|.+..++..|+|++|.|..
T Consensus 99 DPy~TLFv~RL-nydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 99 DPYKTLFVARL-NYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred Cccceeeeeec-cccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 44799999999 999999999999999999999999998 7999999999999999999999999999999999987
Q ss_pred ccc
Q 007955 447 YKE 449 (583)
Q Consensus 447 Ak~ 449 (583)
-..
T Consensus 178 ERg 180 (335)
T KOG0113|consen 178 ERG 180 (335)
T ss_pred ccc
Confidence 543
No 22
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.25 E-value=7.7e-12 Score=126.63 Aligned_cols=78 Identities=15% Similarity=0.283 Sum_probs=74.9
Q ss_pred CcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEecc
Q 007955 373 SRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (583)
Q Consensus 373 ~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~Ak 448 (583)
...+|||.| ...++.++|++.|.+||+|.+++|++| |+||||||.|-+.++|++||..|||+.|.+|.|+-.||.
T Consensus 62 hfhvfvgdl-s~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWAT 140 (321)
T KOG0148|consen 62 HFHVFVGDL-SPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWAT 140 (321)
T ss_pred ceeEEehhc-chhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccc
Confidence 567999999 999999999999999999999999998 899999999999999999999999999999999999998
Q ss_pred cCC
Q 007955 449 EKG 451 (583)
Q Consensus 449 ~K~ 451 (583)
.|.
T Consensus 141 RKp 143 (321)
T KOG0148|consen 141 RKP 143 (321)
T ss_pred cCc
Confidence 776
No 23
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.24 E-value=9.1e-12 Score=132.36 Aligned_cols=87 Identities=21% Similarity=0.285 Sum_probs=77.2
Q ss_pred CCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc---CCCceEEEEECCHHHHHHHHHhCCCe-EE--cCeEEEE
Q 007955 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPH-FV--CDARVLV 444 (583)
Q Consensus 371 ~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D---ksRGfAFVtF~~~e~A~~Al~~mng~-~L--~GR~V~V 444 (583)
...+|||||-| +..+||++|+++|++||.|++|+|++| .+||||||+|.++|.|..|++.||+. .+ +...+.|
T Consensus 122 ~~e~KLFvg~l-sK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVV 200 (510)
T KOG0144|consen 122 VEERKLFVGML-SKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVV 200 (510)
T ss_pred ccchhhhhhhc-cccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEE
Confidence 45789999999 999999999999999999999999997 79999999999999999999999865 34 5678999
Q ss_pred EecccCCCCchHHH
Q 007955 445 KPYKEKGKVPDKYR 458 (583)
Q Consensus 445 k~Ak~K~k~~~~~~ 458 (583)
++|.+++.+..+..
T Consensus 201 kFADtqkdk~~~~l 214 (510)
T KOG0144|consen 201 KFADTQKDKDGKRL 214 (510)
T ss_pred EecccCCCchHHHH
Confidence 99988776665443
No 24
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.22 E-value=2.1e-11 Score=119.68 Aligned_cols=78 Identities=22% Similarity=0.238 Sum_probs=73.4
Q ss_pred CCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 007955 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (583)
Q Consensus 371 ~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~ 446 (583)
....+|-|-|| .+.++.++|+.+|++||.|-+|.|+.| ++||||||.|.+..+|+.|+++|++..|+|+.|.|..
T Consensus 11 ~gm~SLkVdNL-TyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ 89 (256)
T KOG4207|consen 11 EGMTSLKVDNL-TYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQM 89 (256)
T ss_pred ccceeEEecce-eccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehh
Confidence 34578999999 999999999999999999999999998 6999999999999999999999999999999999988
Q ss_pred ccc
Q 007955 447 YKE 449 (583)
Q Consensus 447 Ak~ 449 (583)
|+-
T Consensus 90 ary 92 (256)
T KOG4207|consen 90 ARY 92 (256)
T ss_pred hhc
Confidence 864
No 25
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.22 E-value=4.6e-11 Score=129.27 Aligned_cols=80 Identities=20% Similarity=0.328 Sum_probs=74.5
Q ss_pred CCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 007955 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (583)
Q Consensus 371 ~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~ 446 (583)
+..++|||+|| +..+|+++|+++|++||.|..|.|+.| +++|||||+|.+.++|.+|++.||+..|.|+.|.|.+
T Consensus 184 p~~~~l~v~nl-~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~ 262 (457)
T TIGR01622 184 PNFLKLYVGNL-HFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGY 262 (457)
T ss_pred CCCCEEEEcCC-CCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEE
Confidence 45799999999 999999999999999999999999976 5799999999999999999999999999999999999
Q ss_pred cccCC
Q 007955 447 YKEKG 451 (583)
Q Consensus 447 Ak~K~ 451 (583)
+....
T Consensus 263 a~~~~ 267 (457)
T TIGR01622 263 AQDST 267 (457)
T ss_pred ccCCC
Confidence 87443
No 26
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.21 E-value=6.3e-11 Score=129.71 Aligned_cols=80 Identities=13% Similarity=0.222 Sum_probs=74.2
Q ss_pred CCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 007955 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (583)
Q Consensus 371 ~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~ 446 (583)
...++|||+|| ++.+|+++|+++|++||.|..|.|++| +++|||||+|.+.++|..|++.||+..|.|+.|.|.+
T Consensus 293 ~~~~~l~v~nl-p~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~ 371 (509)
T TIGR01642 293 DSKDRIYIGNL-PLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQR 371 (509)
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 34689999999 999999999999999999999999886 5899999999999999999999999999999999999
Q ss_pred cccCC
Q 007955 447 YKEKG 451 (583)
Q Consensus 447 Ak~K~ 451 (583)
+....
T Consensus 372 a~~~~ 376 (509)
T TIGR01642 372 ACVGA 376 (509)
T ss_pred CccCC
Confidence 86543
No 27
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.21 E-value=5.1e-11 Score=114.10 Aligned_cols=76 Identities=22% Similarity=0.346 Sum_probs=72.5
Q ss_pred CcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEecc
Q 007955 373 SRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (583)
Q Consensus 373 ~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~Ak 448 (583)
.++|||+|| ++++|+++|+++|.+||.|..|+|+.| ++||||||+|.++++|..|+..+++..|.|++|.|.++.
T Consensus 115 ~~~l~v~nL-~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNL-PYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCC-CCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 699999999 999999999999999999999999887 699999999999999999999999999999999999965
Q ss_pred c
Q 007955 449 E 449 (583)
Q Consensus 449 ~ 449 (583)
.
T Consensus 194 ~ 194 (306)
T COG0724 194 P 194 (306)
T ss_pred c
Confidence 3
No 28
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.21 E-value=3.6e-11 Score=134.00 Aligned_cols=74 Identities=20% Similarity=0.316 Sum_probs=70.2
Q ss_pred EEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEeccc
Q 007955 375 QIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (583)
Q Consensus 375 tIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~Ak~ 449 (583)
+||||+| +.++||++|+++|++||+|.+|+|++| +++|||||+|.+.++|++|++.+|+..|.|+.|+|.|+..
T Consensus 2 sl~VgnL-p~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~ 79 (562)
T TIGR01628 2 SLYVGDL-DPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQR 79 (562)
T ss_pred eEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccc
Confidence 6999999 999999999999999999999999987 5789999999999999999999999999999999998753
No 29
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.17 E-value=7.6e-11 Score=118.09 Aligned_cols=78 Identities=22% Similarity=0.261 Sum_probs=74.5
Q ss_pred CCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEec
Q 007955 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (583)
Q Consensus 372 ~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~A 447 (583)
...+|-|.|| +.+++|++|+++|.+||.|..|.|.+| .+||||||+|.++++|.+|++.|||+-.+.-.+.|.|+
T Consensus 188 D~~tvRvtNL-sed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 188 DEATVRVTNL-SEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred ccceeEEecC-ccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 3678999999 999999999999999999999999998 69999999999999999999999999999999999999
Q ss_pred ccC
Q 007955 448 KEK 450 (583)
Q Consensus 448 k~K 450 (583)
+|+
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 886
No 30
>smart00360 RRM RNA recognition motif.
Probab=99.17 E-value=1.1e-10 Score=90.63 Aligned_cols=67 Identities=24% Similarity=0.319 Sum_probs=61.7
Q ss_pred EeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEE
Q 007955 378 LTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (583)
Q Consensus 378 VgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk 445 (583)
|++| +..+++++|+++|++||.|..|.|..+ +++|||||+|.+.++|.+|++.+++..+.|+.|.|.
T Consensus 1 i~~l-~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNL-PPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCC-CcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 5788 899999999999999999999999886 358999999999999999999999999999998873
No 31
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.16 E-value=7.3e-11 Score=132.38 Aligned_cols=77 Identities=19% Similarity=0.211 Sum_probs=70.1
Q ss_pred CCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc---CCCceEEEEECCHHHHHHHHHhCCCeEEc-CeEEEEEe
Q 007955 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVC-DARVLVKP 446 (583)
Q Consensus 371 ~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D---ksRGfAFVtF~~~e~A~~Al~~mng~~L~-GR~V~Vk~ 446 (583)
...++|||+|| +++++|++|+++|++||+|.+|+|++| ++||||||+|.+.++|++||+.||+..|. |+.|.|..
T Consensus 56 ~~~~~lFVgnL-p~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~ 134 (578)
T TIGR01648 56 GRGCEVFVGKI-PRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCI 134 (578)
T ss_pred CCCCEEEeCCC-CCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccc
Confidence 34689999999 999999999999999999999999987 79999999999999999999999998885 78777766
Q ss_pred cc
Q 007955 447 YK 448 (583)
Q Consensus 447 Ak 448 (583)
+.
T Consensus 135 S~ 136 (578)
T TIGR01648 135 SV 136 (578)
T ss_pred cc
Confidence 54
No 32
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.16 E-value=1.1e-10 Score=128.53 Aligned_cols=78 Identities=17% Similarity=0.238 Sum_probs=72.4
Q ss_pred CCCcEEEEeCCCCC-CCCHHHHHHHHhhcCCceeEEEeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEeccc
Q 007955 371 PASRQIYLTFPADS-TFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (583)
Q Consensus 371 ~~~rtIYVgnL~~~-~~tEedLre~FsqFG~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~Ak~ 449 (583)
+..++|||+|| ++ .+|+++|+++|++||.|.+|+|+++ ++|||||+|.+.++|.+|+..||++.|.|+.|+|.+++.
T Consensus 273 ~~~~~l~v~nL-~~~~vt~~~L~~lF~~yG~V~~vki~~~-~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~ 350 (481)
T TIGR01649 273 GPGSVLMVSGL-HQEKVNCDRLFNLFCVYGNVERVKFMKN-KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQ 350 (481)
T ss_pred CCCCEEEEeCC-CCCCCCHHHHHHHHHhcCCeEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccc
Confidence 45789999999 76 7999999999999999999999986 589999999999999999999999999999999999865
Q ss_pred C
Q 007955 450 K 450 (583)
Q Consensus 450 K 450 (583)
+
T Consensus 351 ~ 351 (481)
T TIGR01649 351 Q 351 (481)
T ss_pred c
Confidence 4
No 33
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.15 E-value=1.2e-10 Score=128.25 Aligned_cols=75 Identities=16% Similarity=0.166 Sum_probs=70.3
Q ss_pred CcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEeccCCCceEEEEECCHHHHHHHHHhC--CCeEEcCeEEEEEecccC
Q 007955 373 SRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKG--NPHFVCDARVLVKPYKEK 450 (583)
Q Consensus 373 ~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~m--ng~~L~GR~V~Vk~Ak~K 450 (583)
+++|||+|| +++++|++|+++|++||+|.+|.|++ +||||||+|.+.++|++|++.+ ++..|.|+.|.|.++..+
T Consensus 2 s~vv~V~nL-p~~~te~~L~~~f~~fG~V~~v~i~~--~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~ 78 (481)
T TIGR01649 2 SPVVHVRNL-PQDVVEADLVEALIPFGPVSYVMMLP--GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQ 78 (481)
T ss_pred ccEEEEcCC-CCCCCHHHHHHHHHhcCCeeEEEEEC--CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCc
Confidence 689999999 99999999999999999999999997 7899999999999999999864 789999999999998754
No 34
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.15 E-value=1.3e-10 Score=130.48 Aligned_cols=77 Identities=23% Similarity=0.229 Sum_probs=71.4
Q ss_pred CCcEEEEeCCCCCCCCHHHHHHHHhhc--CCceeEEEeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEeccc
Q 007955 372 ASRQIYLTFPADSTFREEDVSNYFSIY--GPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (583)
Q Consensus 372 ~~rtIYVgnL~~~~~tEedLre~FsqF--G~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~Ak~ 449 (583)
..++|||+|| ++.++|++|+++|++| |+|++|+++ ++||||+|.+.++|++|++.||+..|+|+.|+|.++++
T Consensus 232 ~~k~LfVgNL-~~~~tee~L~~~F~~f~~G~I~rV~~~----rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp 306 (578)
T TIGR01648 232 KVKILYVRNL-MTTTTEEIIEKSFSEFKPGKVERVKKI----RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKP 306 (578)
T ss_pred cccEEEEeCC-CCCCCHHHHHHHHHhcCCCceEEEEee----cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccC
Confidence 4689999999 9999999999999999 999999876 47999999999999999999999999999999999987
Q ss_pred CCCC
Q 007955 450 KGKV 453 (583)
Q Consensus 450 K~k~ 453 (583)
+.+.
T Consensus 307 ~~~~ 310 (578)
T TIGR01648 307 VDKK 310 (578)
T ss_pred CCcc
Confidence 6543
No 35
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.15 E-value=1.3e-10 Score=125.82 Aligned_cols=78 Identities=22% Similarity=0.313 Sum_probs=71.8
Q ss_pred CCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEE
Q 007955 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (583)
Q Consensus 370 ~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk 445 (583)
....++|||+|| +..+++++|+++|++||+|.+|+|+.| ++||||||+|.+.++|.+|+. |++..|.|+.|.|.
T Consensus 86 ~~~~~~l~V~nl-p~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~ 163 (457)
T TIGR01622 86 ERDDRTVFVLQL-ALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQ 163 (457)
T ss_pred ccCCcEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEe
Confidence 345789999999 999999999999999999999999987 589999999999999999997 59999999999998
Q ss_pred eccc
Q 007955 446 PYKE 449 (583)
Q Consensus 446 ~Ak~ 449 (583)
....
T Consensus 164 ~~~~ 167 (457)
T TIGR01622 164 SSQA 167 (457)
T ss_pred ecch
Confidence 7654
No 36
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.14 E-value=5.5e-11 Score=124.35 Aligned_cols=112 Identities=29% Similarity=0.378 Sum_probs=92.1
Q ss_pred HHHhccccccc-CcccccccccccCCCCC--CCCCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCC
Q 007955 340 ALMLNEDMHKF-GRSRLERNDFSINGSAG--IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKR 412 (583)
Q Consensus 340 a~~L~~d~~~f-gr~R~erkd~~~~g~~g--~~~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksR 412 (583)
..+|....|++ |+. ++.+.+.+.+... ......++||||+| +..++|++++++|.+||.|.++.|++| +.|
T Consensus 62 ~~vl~~~~h~~dgr~-ve~k~av~r~~~~~~~~~~~tkkiFvGG~-~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~r 139 (311)
T KOG4205|consen 62 DAVLNARTHKLDGRS-VEPKRAVSREDQTKVGRHLRTKKIFVGGL-PPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPR 139 (311)
T ss_pred heeecccccccCCcc-ccceeccCcccccccccccceeEEEecCc-CCCCchHHHhhhhhccceeEeeEEeecccccccc
Confidence 34677778888 554 6666554333221 12224779999999 999999999999999999999999998 699
Q ss_pred ceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEecccCCCCc
Q 007955 413 MFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEKGKVP 454 (583)
Q Consensus 413 GfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~Ak~K~k~~ 454 (583)
|||||+|.+++++++++.. .-|.|+|+.|.|+.|.+|....
T Consensus 140 gFgfv~~~~e~sVdkv~~~-~f~~~~gk~vevkrA~pk~~~~ 180 (311)
T KOG4205|consen 140 GFGFVTFDSEDSVDKVTLQ-KFHDFNGKKVEVKRAIPKEVMQ 180 (311)
T ss_pred cceeeEeccccccceeccc-ceeeecCceeeEeeccchhhcc
Confidence 9999999999999999988 8999999999999999987654
No 37
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.12 E-value=1.8e-11 Score=125.03 Aligned_cols=127 Identities=17% Similarity=0.236 Sum_probs=91.9
Q ss_pred cEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEecccCCCC
Q 007955 374 RQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEKGKV 453 (583)
Q Consensus 374 rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~Ak~K~k~ 453 (583)
.||||||| +..+++.+|+.+|++||+|.+|.|++ .||||..++...++.|+..|++..|+|..|.|+.++.|.+.
T Consensus 3 ~KLFIGNL-p~~~~~~elr~lFe~ygkVlECDIvK----NYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKsk~ 77 (346)
T KOG0109|consen 3 VKLFIGNL-PREATEQELRSLFEQYGKVLECDIVK----NYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKSKA 77 (346)
T ss_pred cchhccCC-CcccchHHHHHHHHhhCceEeeeeec----ccceEEeecccccHHHHhhcccceecceEEEEEeccccCCC
Confidence 48999999 99999999999999999999999996 69999999999999999999999999999999999988655
Q ss_pred chHHHHHHHHhhcCCCCCCCCCCCCCCCCcccccccccccCCchHHHHHHHHHHHHHHHHHHH
Q 007955 454 PDKYRKQQQQVERGEFSPCGTPTGLDSRDPFDLQLGARMFYNNTQDMLWRRKMEEQADLQQAL 516 (583)
Q Consensus 454 ~~~~~~qqqq~eRg~~s~~~~p~~~d~~dp~dl~lg~R~~~~~~~e~l~rrkleeq~eLqqAi 516 (583)
..+.. -||.+..+....+... |+- . ..+.+++..+.....+++..++.++||
T Consensus 78 stkl~-------vgNis~tctn~ElRa~--fe~-y-gpviecdivkdy~fvh~d~~eda~~ai 129 (346)
T KOG0109|consen 78 STKLH-------VGNISPTCTNQELRAK--FEK-Y-GPVIECDIVKDYAFVHFDRAEDAVEAI 129 (346)
T ss_pred ccccc-------cCCCCccccCHHHhhh--hcc-c-CCceeeeeecceeEEEEeeccchHHHH
Confidence 44433 3455444433322221 110 0 112333333333344555556666777
No 38
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.11 E-value=5e-10 Score=87.81 Aligned_cols=71 Identities=25% Similarity=0.329 Sum_probs=66.1
Q ss_pred EEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEeccC---CCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 007955 375 QIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQ---KRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (583)
Q Consensus 375 tIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~Dk---sRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~ 446 (583)
+|||++| +..+++++|+++|..||.|..+.+..+. .+|+|||+|.+.++|..|++.+++..+.|+++.|.+
T Consensus 1 ~i~i~~l-~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNL-PPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCC-CCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 5899999 9999999999999999999999998863 589999999999999999999999999999999863
No 39
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.10 E-value=2.8e-11 Score=116.76 Aligned_cols=79 Identities=18% Similarity=0.234 Sum_probs=73.7
Q ss_pred CCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEec
Q 007955 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (583)
Q Consensus 372 ~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~A 447 (583)
.+--|||||| ++++||.||--+|++||+|++|.+++| +|+||||..|++..+--.|+..|||..|.||.|+|...
T Consensus 34 dsA~Iyiggl-~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 34 DSAYIYIGGL-PYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred cceEEEECCC-cccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 3678999999 999999999999999999999999998 79999999999999999999999999999999999987
Q ss_pred ccCC
Q 007955 448 KEKG 451 (583)
Q Consensus 448 k~K~ 451 (583)
..-.
T Consensus 113 ~~Yk 116 (219)
T KOG0126|consen 113 SNYK 116 (219)
T ss_pred cccc
Confidence 5433
No 40
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.10 E-value=1.2e-10 Score=112.52 Aligned_cols=78 Identities=21% Similarity=0.282 Sum_probs=73.6
Q ss_pred CCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEec
Q 007955 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (583)
Q Consensus 372 ~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~A 447 (583)
...||||||| +..++++.|+++|-+.|+|++++|++| ..+|||||+|.++|+|+-|++-||...|.||+|+|..+
T Consensus 8 qd~tiyvgnl-d~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 8 QDATLYVGNL-DEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCceEEEecC-CHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 3579999999 999999999999999999999999998 58999999999999999999999999999999999998
Q ss_pred ccC
Q 007955 448 KEK 450 (583)
Q Consensus 448 k~K 450 (583)
...
T Consensus 87 s~~ 89 (203)
T KOG0131|consen 87 SAH 89 (203)
T ss_pred ccc
Confidence 743
No 41
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.08 E-value=4.1e-10 Score=88.15 Aligned_cols=56 Identities=23% Similarity=0.304 Sum_probs=51.2
Q ss_pred HHHHHhhcCCceeEEEeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEec
Q 007955 391 VSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (583)
Q Consensus 391 Lre~FsqFG~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~A 447 (583)
|+++|++||+|.+|.+...+ +++|||+|.+.++|++|++.+|+..++|++|+|.++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999998843 599999999999999999999999999999999875
No 42
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.07 E-value=8.1e-10 Score=118.18 Aligned_cols=79 Identities=16% Similarity=0.215 Sum_probs=72.6
Q ss_pred CCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEc-CeEEEE
Q 007955 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVC-DARVLV 444 (583)
Q Consensus 370 ~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~-GR~V~V 444 (583)
.+.-.-||||.| +.++.|++|..+|++-|+|-++|||.| .+||||||+|.+.++|++|++.+|+++|. |+.|.|
T Consensus 80 p~~G~EVfvGkI-PrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igv 158 (506)
T KOG0117|consen 80 PPRGCEVFVGKI-PRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGV 158 (506)
T ss_pred CCCCceEEecCC-CccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEE
Confidence 355678999999 999999999999999999999999998 69999999999999999999999999885 999998
Q ss_pred Eeccc
Q 007955 445 KPYKE 449 (583)
Q Consensus 445 k~Ak~ 449 (583)
+....
T Consensus 159 c~Sva 163 (506)
T KOG0117|consen 159 CVSVA 163 (506)
T ss_pred EEeee
Confidence 87643
No 43
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.04 E-value=3.7e-10 Score=103.88 Aligned_cols=76 Identities=16% Similarity=0.134 Sum_probs=70.5
Q ss_pred CCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEeccC----CCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 007955 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQ----KRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (583)
Q Consensus 371 ~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~Dk----sRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~ 446 (583)
.++.||||||| ++.++||.|.++|++.|+|..|.|-.|+ .-||+||+|-..++|+.|++-+++..|+.+.|.|.|
T Consensus 34 r~S~tvyVgNl-SfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 34 RKSCTVYVGNL-SFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred hhcceEEEeee-eeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 45789999999 9999999999999999999999887773 459999999999999999999999999999999987
Q ss_pred c
Q 007955 447 Y 447 (583)
Q Consensus 447 A 447 (583)
-
T Consensus 113 D 113 (153)
T KOG0121|consen 113 D 113 (153)
T ss_pred c
Confidence 4
No 44
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.02 E-value=7.2e-10 Score=120.60 Aligned_cols=79 Identities=22% Similarity=0.275 Sum_probs=75.2
Q ss_pred cEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEeccc
Q 007955 374 RQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (583)
Q Consensus 374 rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~Ak~ 449 (583)
+.||||++ +++++|++|.++|+..|.|.++++++| +.|||||++|.+.++|..|++.+|+.++.||+|+|.++..
T Consensus 19 ~~v~vgni-p~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 19 SSVFVGNI-PYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASN 97 (435)
T ss_pred cceEecCC-CCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccc
Confidence 89999999 999999999999999999999999998 7999999999999999999999999999999999999876
Q ss_pred CCCC
Q 007955 450 KGKV 453 (583)
Q Consensus 450 K~k~ 453 (583)
....
T Consensus 98 ~~~~ 101 (435)
T KOG0108|consen 98 RKNA 101 (435)
T ss_pred cchh
Confidence 5543
No 45
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.01 E-value=9.5e-10 Score=115.15 Aligned_cols=78 Identities=18% Similarity=0.427 Sum_probs=72.4
Q ss_pred cEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEeccc
Q 007955 374 RQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (583)
Q Consensus 374 rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~Ak~ 449 (583)
.+||||.| .+++.|+.||..|..||+|.+|.+-.| ++||||||+|+-+|.|+.|++.||+..+.||.|+|.+-..
T Consensus 114 cRvYVGSI-sfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 114 CRVYVGSI-SFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred Hheeeeee-EEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 57999999 999999999999999999999999887 8999999999999999999999999999999999986554
Q ss_pred CCC
Q 007955 450 KGK 452 (583)
Q Consensus 450 K~k 452 (583)
-..
T Consensus 193 mpQ 195 (544)
T KOG0124|consen 193 MPQ 195 (544)
T ss_pred Ccc
Confidence 443
No 46
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.01 E-value=1.2e-09 Score=97.37 Aligned_cols=80 Identities=19% Similarity=0.240 Sum_probs=74.0
Q ss_pred CCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc-CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEeccc
Q 007955 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ-QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (583)
Q Consensus 371 ~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D-ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~Ak~ 449 (583)
..++-|||.|| ++++|.++..++|++||.|..|||-.. .-||-|||.|++-.+|++|++.|++..++++-+.|-.+++
T Consensus 16 evnriLyirNL-p~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~ 94 (124)
T KOG0114|consen 16 EVNRILYIRNL-PFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQP 94 (124)
T ss_pred hhheeEEEecC-CccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCH
Confidence 34788999999 999999999999999999999999665 5899999999999999999999999999999999999876
Q ss_pred CC
Q 007955 450 KG 451 (583)
Q Consensus 450 K~ 451 (583)
.+
T Consensus 95 ~~ 96 (124)
T KOG0114|consen 95 ED 96 (124)
T ss_pred HH
Confidence 44
No 47
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.00 E-value=2.3e-10 Score=119.83 Aligned_cols=80 Identities=29% Similarity=0.398 Sum_probs=74.8
Q ss_pred CCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEec
Q 007955 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (583)
Q Consensus 372 ~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~A 447 (583)
...|||||+| +|+++++.|++||++||+|.+|.|++| ++|||+||+|.+.+.+.+++.. ..|.|+|+.|.++.|
T Consensus 5 ~~~KlfiGgi-sw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~a 82 (311)
T KOG4205|consen 5 ESGKLFIGGL-SWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRA 82 (311)
T ss_pred CCcceeecCc-CccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceec
Confidence 5789999999 999999999999999999999999998 7999999999999999999888 789999999999999
Q ss_pred ccCCCC
Q 007955 448 KEKGKV 453 (583)
Q Consensus 448 k~K~k~ 453 (583)
.++...
T Consensus 83 v~r~~~ 88 (311)
T KOG4205|consen 83 VSREDQ 88 (311)
T ss_pred cCcccc
Confidence 887643
No 48
>smart00361 RRM_1 RNA recognition motif.
Probab=98.97 E-value=1.6e-09 Score=89.10 Aligned_cols=57 Identities=25% Similarity=0.318 Sum_probs=51.5
Q ss_pred HHHHHHHHh----hcCCceeEE-Eecc------CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEE
Q 007955 388 EEDVSNYFS----IYGPVQDVR-IPYQ------QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (583)
Q Consensus 388 EedLre~Fs----qFG~V~~Vr-I~~D------ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~V 444 (583)
+++|+++|+ +||+|.+|. |+.+ ++||||||+|.+.++|.+|+..||+..+.||.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 678999999 999999995 5443 57999999999999999999999999999999986
No 49
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.97 E-value=1.3e-09 Score=116.63 Aligned_cols=79 Identities=20% Similarity=0.275 Sum_probs=73.4
Q ss_pred CCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEecccC
Q 007955 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEK 450 (583)
Q Consensus 371 ~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~Ak~K 450 (583)
...+-|||.|| ..++|||.|++.|++||+|+.|+.++| ||||.|.++++|-+|++.||++.|+|..|.|..|++.
T Consensus 257 s~VKvLYVRNL-~~~tTeE~lk~~F~~~G~veRVkk~rD----YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~ 331 (506)
T KOG0117|consen 257 SKVKVLYVRNL-MESTTEETLKKLFNEFGKVERVKKPRD----YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPV 331 (506)
T ss_pred hheeeeeeecc-chhhhHHHHHHHHHhccceEEeecccc----eeEEeecchHHHHHHHHHhcCceecCceEEEEecCCh
Confidence 45678999999 999999999999999999999998875 9999999999999999999999999999999999986
Q ss_pred CCCc
Q 007955 451 GKVP 454 (583)
Q Consensus 451 ~k~~ 454 (583)
.+..
T Consensus 332 ~k~k 335 (506)
T KOG0117|consen 332 DKKK 335 (506)
T ss_pred hhhc
Confidence 6544
No 50
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.93 E-value=1.1e-09 Score=119.65 Aligned_cols=78 Identities=21% Similarity=0.348 Sum_probs=73.7
Q ss_pred EEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEecccCC
Q 007955 376 IYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEKG 451 (583)
Q Consensus 376 IYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~Ak~K~ 451 (583)
|||||| .++++|++|+.+|+.||+|+.|.+++| ++||||||+|.+.++|++|++.||+.+|.||.|+|.....+.
T Consensus 281 l~vgnL-HfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~ 359 (549)
T KOG0147|consen 281 LYVGNL-HFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERV 359 (549)
T ss_pred hhhccc-ccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeec
Confidence 999999 999999999999999999999999987 799999999999999999999999999999999999887766
Q ss_pred CCc
Q 007955 452 KVP 454 (583)
Q Consensus 452 k~~ 454 (583)
...
T Consensus 360 ~~~ 362 (549)
T KOG0147|consen 360 DTK 362 (549)
T ss_pred ccc
Confidence 544
No 51
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.92 E-value=2.4e-09 Score=116.77 Aligned_cols=82 Identities=22% Similarity=0.229 Sum_probs=75.7
Q ss_pred CcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEeccc
Q 007955 373 SRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (583)
Q Consensus 373 ~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D---ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~Ak~ 449 (583)
.-+|.|.|| +|.+.+.||+.+|+.||.|.+|.||+- +-.|||||.|.+..+|..|++.+|++.|+||.|-|.||.+
T Consensus 117 k~rLIIRNL-Pf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 117 KWRLIIRNL-PFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred cceEEeecC-CcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 568999999 999999999999999999999999984 5569999999999999999999999999999999999998
Q ss_pred CCCCch
Q 007955 450 KGKVPD 455 (583)
Q Consensus 450 K~k~~~ 455 (583)
|..-..
T Consensus 196 Kd~ye~ 201 (678)
T KOG0127|consen 196 KDTYED 201 (678)
T ss_pred cccccc
Confidence 875443
No 52
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.90 E-value=3.1e-09 Score=113.43 Aligned_cols=83 Identities=16% Similarity=0.194 Sum_probs=71.9
Q ss_pred CCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCe-EEc--CeEE
Q 007955 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPH-FVC--DARV 442 (583)
Q Consensus 370 ~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~-~L~--GR~V 442 (583)
+.+.-|+|||-| +..++|.||+++|++||.|.+|.|++| .+|||+||+|.+.++|.+|+.++++. .|- ...|
T Consensus 31 d~~~vKlfVgqI-prt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pv 109 (510)
T KOG0144|consen 31 DGSAVKLFVGQI-PRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPV 109 (510)
T ss_pred CchhhhheeccC-CccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcce
Confidence 355679999999 999999999999999999999999999 58999999999999999999999654 443 4578
Q ss_pred EEEecccCCCC
Q 007955 443 LVKPYKEKGKV 453 (583)
Q Consensus 443 ~Vk~Ak~K~k~ 453 (583)
.|++|....++
T Consensus 110 qvk~Ad~E~er 120 (510)
T KOG0144|consen 110 QVKYADGERER 120 (510)
T ss_pred eecccchhhhc
Confidence 88888765554
No 53
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.89 E-value=2.6e-09 Score=103.60 Aligned_cols=80 Identities=20% Similarity=0.304 Sum_probs=71.6
Q ss_pred CCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc-CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEeccc
Q 007955 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ-QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (583)
Q Consensus 371 ~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D-ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~Ak~ 449 (583)
...++|||||| +.++.|.+|+++|.+||.|.+|.+..- ....||||+|+++.+|+.||..-++..++|.++.|.++..
T Consensus 4 r~~~~iyvGNL-P~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprg 82 (241)
T KOG0105|consen 4 RNSRRIYVGNL-PGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRG 82 (241)
T ss_pred cccceEEecCC-CcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccC
Confidence 45789999999 999999999999999999999987442 3468999999999999999999999999999999999865
Q ss_pred CC
Q 007955 450 KG 451 (583)
Q Consensus 450 K~ 451 (583)
-.
T Consensus 83 gr 84 (241)
T KOG0105|consen 83 GR 84 (241)
T ss_pred CC
Confidence 43
No 54
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.88 E-value=5e-09 Score=106.02 Aligned_cols=77 Identities=21% Similarity=0.230 Sum_probs=72.3
Q ss_pred CcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEecc
Q 007955 373 SRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (583)
Q Consensus 373 ~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~Ak 448 (583)
--.|||-|| ..+.+|.-||.+|++||.|..|+|++| ++||||||++.+.++|..|+..+||..+.+|.+.|.+..
T Consensus 278 g~ciFvYNL-spd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKt 356 (360)
T KOG0145|consen 278 GWCIFVYNL-SPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKT 356 (360)
T ss_pred eeEEEEEec-CCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEec
Confidence 457999999 889999999999999999999999998 899999999999999999999999999999999998865
Q ss_pred cC
Q 007955 449 EK 450 (583)
Q Consensus 449 ~K 450 (583)
.|
T Consensus 357 nk 358 (360)
T KOG0145|consen 357 NK 358 (360)
T ss_pred CC
Confidence 44
No 55
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.88 E-value=3.5e-09 Score=119.18 Aligned_cols=84 Identities=20% Similarity=0.254 Sum_probs=78.5
Q ss_pred CCCCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEec
Q 007955 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (583)
Q Consensus 368 ~~~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~A 447 (583)
.....+||||||+| +..++|.||+..|+.||+|++|.++. .||||||++..+.+|.+|+.+|+.+.+.++.|+|.|+
T Consensus 416 ~isV~SrTLwvG~i-~k~v~e~dL~~~feefGeiqSi~li~--~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa 492 (894)
T KOG0132|consen 416 HISVCSRTLWVGGI-PKNVTEQDLANLFEEFGEIQSIILIP--PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWA 492 (894)
T ss_pred ceeEeeeeeeeccc-cchhhHHHHHHHHHhcccceeEeecc--CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeee
Confidence 34456899999999 99999999999999999999999988 9999999999999999999999999999999999999
Q ss_pred ccCCCCc
Q 007955 448 KEKGKVP 454 (583)
Q Consensus 448 k~K~k~~ 454 (583)
..++-+.
T Consensus 493 ~g~G~ks 499 (894)
T KOG0132|consen 493 VGKGPKS 499 (894)
T ss_pred ccCCcch
Confidence 9887665
No 56
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.86 E-value=6.8e-09 Score=113.83 Aligned_cols=78 Identities=19% Similarity=0.294 Sum_probs=66.2
Q ss_pred CCCCCCcEEEEeCCCCCCCCHHHHHHHHhhc------------CCceeEEEeccCCCceEEEEECCHHHHHHHHHhCCCe
Q 007955 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIY------------GPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPH 435 (583)
Q Consensus 368 ~~~~~~rtIYVgnL~~~~~tEedLre~FsqF------------G~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~mng~ 435 (583)
......++|||||| ++.+|+++|+++|.+| +.|..|.+.. .+|||||+|.+.++|..||+ |++.
T Consensus 170 ~~~~~~r~lyVgnL-p~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~--~kg~afVeF~~~e~A~~Al~-l~g~ 245 (509)
T TIGR01642 170 QATRQARRLYVGGI-PPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINK--EKNFAFLEFRTVEEATFAMA-LDSI 245 (509)
T ss_pred cCCccccEEEEeCC-CCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECC--CCCEEEEEeCCHHHHhhhhc-CCCe
Confidence 34566799999999 9999999999999985 3455566554 78999999999999999994 8999
Q ss_pred EEcCeEEEEEeccc
Q 007955 436 FVCDARVLVKPYKE 449 (583)
Q Consensus 436 ~L~GR~V~Vk~Ak~ 449 (583)
.|.|+.|+|.+...
T Consensus 246 ~~~g~~l~v~r~~~ 259 (509)
T TIGR01642 246 IYSNVFLKIRRPHD 259 (509)
T ss_pred EeeCceeEecCccc
Confidence 99999999976543
No 57
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.84 E-value=9.3e-09 Score=104.08 Aligned_cols=82 Identities=12% Similarity=0.296 Sum_probs=76.3
Q ss_pred CCCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEE
Q 007955 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (583)
Q Consensus 369 ~~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~V 444 (583)
.+.+.+.|.|.-| +..+|+++|+.+|+..|+|++|++++| ++-|||||.|.++++|++|+..+||..|..+.|+|
T Consensus 37 t~~skTNLIvNYL-PQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKV 115 (360)
T KOG0145|consen 37 TDESKTNLIVNYL-PQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKV 115 (360)
T ss_pred cCcccceeeeeec-ccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEE
Confidence 3456778999999 999999999999999999999999998 68899999999999999999999999999999999
Q ss_pred EecccCC
Q 007955 445 KPYKEKG 451 (583)
Q Consensus 445 k~Ak~K~ 451 (583)
.+|++..
T Consensus 116 SyARPSs 122 (360)
T KOG0145|consen 116 SYARPSS 122 (360)
T ss_pred EeccCCh
Confidence 9998754
No 58
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.82 E-value=5.6e-09 Score=114.03 Aligned_cols=80 Identities=25% Similarity=0.400 Sum_probs=75.5
Q ss_pred cEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEeccc
Q 007955 374 RQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (583)
Q Consensus 374 rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~Ak~ 449 (583)
.||||++| +++++.++|.++|+.+|+|..|.++.+ ++||||||+|.-.|++++|++..++..+.||.|.|..|+.
T Consensus 6 ~TlfV~~l-p~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~ 84 (678)
T KOG0127|consen 6 ATLFVSRL-PFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKK 84 (678)
T ss_pred ceEEEecC-CCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccc
Confidence 79999999 999999999999999999999999986 6999999999999999999999999999999999999987
Q ss_pred CCCCc
Q 007955 450 KGKVP 454 (583)
Q Consensus 450 K~k~~ 454 (583)
+.+..
T Consensus 85 R~r~e 89 (678)
T KOG0127|consen 85 RARSE 89 (678)
T ss_pred cccch
Confidence 76544
No 59
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.75 E-value=1.4e-08 Score=108.98 Aligned_cols=77 Identities=17% Similarity=0.347 Sum_probs=72.6
Q ss_pred EEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc--CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEecccCCCC
Q 007955 376 IYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ--QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEKGKV 453 (583)
Q Consensus 376 IYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D--ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~Ak~K~k~ 453 (583)
|||.|| +.+++..+|.+.|+.||+|.+|+|++| -+||| ||.|+++++|++|++.+||..+.|+.|.|..+..+..+
T Consensus 79 ~~i~nl-~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er 156 (369)
T KOG0123|consen 79 VFIKNL-DESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEER 156 (369)
T ss_pred eeecCC-CcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhh
Confidence 999999 999999999999999999999999998 58999 99999999999999999999999999999998876654
Q ss_pred c
Q 007955 454 P 454 (583)
Q Consensus 454 ~ 454 (583)
.
T Consensus 157 ~ 157 (369)
T KOG0123|consen 157 E 157 (369)
T ss_pred c
Confidence 3
No 60
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.75 E-value=1.1e-08 Score=105.03 Aligned_cols=81 Identities=19% Similarity=0.211 Sum_probs=74.1
Q ss_pred CCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEeccc
Q 007955 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (583)
Q Consensus 370 ~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~Ak~ 449 (583)
+..++||+|||| ...++..+|+..|.+||+|.+|.|++ +|+||.|+..++|..|++.|++.++.|+++.|.....
T Consensus 75 sk~stkl~vgNi-s~tctn~ElRa~fe~ygpviecdivk----dy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~sts 149 (346)
T KOG0109|consen 75 SKASTKLHVGNI-SPTCTNQELRAKFEKYGPVIECDIVK----DYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTS 149 (346)
T ss_pred CCCccccccCCC-CccccCHHHhhhhcccCCceeeeeec----ceeEEEEeeccchHHHHhcccccccccceeeeeeecc
Confidence 456789999999 99999999999999999999999986 6999999999999999999999999999999999877
Q ss_pred CCCCch
Q 007955 450 KGKVPD 455 (583)
Q Consensus 450 K~k~~~ 455 (583)
+-+...
T Consensus 150 rlrtap 155 (346)
T KOG0109|consen 150 RLRTAP 155 (346)
T ss_pred ccccCC
Confidence 655443
No 61
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.74 E-value=1.4e-08 Score=103.23 Aligned_cols=82 Identities=13% Similarity=0.246 Sum_probs=71.6
Q ss_pred CCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc---CCCceEEEEECCHHHHHHHHHhCCCe-EEc--CeEEEEE
Q 007955 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPH-FVC--DARVLVK 445 (583)
Q Consensus 372 ~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D---ksRGfAFVtF~~~e~A~~Al~~mng~-~L~--GR~V~Vk 445 (583)
..||||||-| ...-.|+|++++|..||.|++|.|.++ .+||||||.|.+..+|+.||..+++. .+- ...+.|+
T Consensus 18 ~drklfvgml-~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGML-NKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhh-cccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 6799999999 999999999999999999999999885 79999999999999999999999754 333 3568899
Q ss_pred ecccCCCCc
Q 007955 446 PYKEKGKVP 454 (583)
Q Consensus 446 ~Ak~K~k~~ 454 (583)
++...+++.
T Consensus 97 ~ADTdkER~ 105 (371)
T KOG0146|consen 97 FADTDKERT 105 (371)
T ss_pred eccchHHHH
Confidence 987666554
No 62
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.72 E-value=1.7e-08 Score=93.78 Aligned_cols=79 Identities=18% Similarity=0.229 Sum_probs=72.6
Q ss_pred CcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEecc
Q 007955 373 SRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (583)
Q Consensus 373 ~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~Ak 448 (583)
---|||+++ ....||++|.+.|..||+|..|.+-.| -.||||.|+|++.+.|++|+..+|+..|-|..|.|.|+-
T Consensus 72 GwIi~Vtgv-HeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~F 150 (170)
T KOG0130|consen 72 GWIIFVTGV-HEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCF 150 (170)
T ss_pred eEEEEEecc-CcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEE
Confidence 347999999 999999999999999999999999877 379999999999999999999999999999999999986
Q ss_pred cCCC
Q 007955 449 EKGK 452 (583)
Q Consensus 449 ~K~k 452 (583)
-+.+
T Consensus 151 v~gp 154 (170)
T KOG0130|consen 151 VKGP 154 (170)
T ss_pred ecCC
Confidence 5544
No 63
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.71 E-value=3e-08 Score=106.05 Aligned_cols=78 Identities=26% Similarity=0.321 Sum_probs=71.7
Q ss_pred CCCCCcEEEEeCCCCCCCCHHHHHHHHh-hcCCceeEEEecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEE
Q 007955 369 VNPASRQIYLTFPADSTFREEDVSNYFS-IYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (583)
Q Consensus 369 ~~~~~rtIYVgnL~~~~~tEedLre~Fs-qFG~V~~VrI~~D---ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~V 444 (583)
.....|.+||+|| +++..+.||+++|. +.|+|+.|.+..| |+||||.|+|+++|.+++|++.||.+.+.||.|+|
T Consensus 40 ~~~r~R~vfItNI-pyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~v 118 (608)
T KOG4212|consen 40 VAARDRSVFITNI-PYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVV 118 (608)
T ss_pred cccccceEEEecC-cchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEE
Confidence 3445677999999 99999999999997 5799999999998 89999999999999999999999999999999999
Q ss_pred Eec
Q 007955 445 KPY 447 (583)
Q Consensus 445 k~A 447 (583)
+.-
T Consensus 119 KEd 121 (608)
T KOG4212|consen 119 KED 121 (608)
T ss_pred ecc
Confidence 754
No 64
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.71 E-value=1.9e-08 Score=97.44 Aligned_cols=83 Identities=17% Similarity=0.301 Sum_probs=73.5
Q ss_pred CCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeE-EEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEE
Q 007955 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDV-RIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (583)
Q Consensus 371 ~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~V-rI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk 445 (583)
....+|||||| +..++|.-|.+.|+.||.+... .|++| .++|||||.|.+.|.+.+|++.||++.++.|+|.|.
T Consensus 94 ~vganlfvgNL-d~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ 172 (203)
T KOG0131|consen 94 DVGANLFVGNL-DPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVS 172 (203)
T ss_pred ccccccccccc-CcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEE
Confidence 44579999999 7799999999999999998874 55554 789999999999999999999999999999999999
Q ss_pred ecccCCCCc
Q 007955 446 PYKEKGKVP 454 (583)
Q Consensus 446 ~Ak~K~k~~ 454 (583)
.+..+....
T Consensus 173 ya~k~~~kg 181 (203)
T KOG0131|consen 173 YAFKKDTKG 181 (203)
T ss_pred EEEecCCCc
Confidence 998766543
No 65
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=7.9e-08 Score=100.77 Aligned_cols=81 Identities=17% Similarity=0.289 Sum_probs=73.9
Q ss_pred CCCCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEeccC----CCceEEEEECCHHHHHHHHHhCCCeEEcCeEEE
Q 007955 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQ----KRMFGFVTFVYPETVKIILAKGNPHFVCDARVL 443 (583)
Q Consensus 368 ~~~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~Dk----sRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~ 443 (583)
...|...-|||--| ..-+|.+||.-+|+.||+|..|.|++|+ +-.||||+|++.+++++|.-+|++..|+.|+|.
T Consensus 234 d~~PPeNVLFVCKL-NPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIH 312 (479)
T KOG0415|consen 234 DVKPPENVLFVCKL-NPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIH 312 (479)
T ss_pred ccCCCcceEEEEec-CCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEE
Confidence 34466789999999 8899999999999999999999999983 668999999999999999999999999999999
Q ss_pred EEeccc
Q 007955 444 VKPYKE 449 (583)
Q Consensus 444 Vk~Ak~ 449 (583)
|.+.+.
T Consensus 313 VDFSQS 318 (479)
T KOG0415|consen 313 VDFSQS 318 (479)
T ss_pred eehhhh
Confidence 988754
No 66
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.63 E-value=7.1e-08 Score=96.05 Aligned_cols=81 Identities=15% Similarity=0.230 Sum_probs=74.1
Q ss_pred CcEEEEeCCCCCCCCHHHHHH----HHhhcCCceeEEEecc-CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEec
Q 007955 373 SRQIYLTFPADSTFREEDVSN----YFSIYGPVQDVRIPYQ-QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (583)
Q Consensus 373 ~rtIYVgnL~~~~~tEedLre----~FsqFG~V~~VrI~~D-ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~A 447 (583)
+.||||.|| ...+..++|++ +|++||+|.+|...+- +.||-|||.|.+.+.|..|+..|+|-.+.|+.++|.+|
T Consensus 9 n~TlYInnL-nekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA 87 (221)
T KOG4206|consen 9 NGTLYINNL-NEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYA 87 (221)
T ss_pred CceEeehhc-cccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheecc
Confidence 349999999 99999999998 9999999999988654 79999999999999999999999999999999999999
Q ss_pred ccCCCCc
Q 007955 448 KEKGKVP 454 (583)
Q Consensus 448 k~K~k~~ 454 (583)
+.+....
T Consensus 88 ~s~sdii 94 (221)
T KOG4206|consen 88 KSDSDII 94 (221)
T ss_pred cCccchh
Confidence 8876544
No 67
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.54 E-value=7.1e-08 Score=98.09 Aligned_cols=82 Identities=18% Similarity=0.354 Sum_probs=76.1
Q ss_pred CCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 007955 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (583)
Q Consensus 371 ~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~ 446 (583)
+.-.+|||-.| +-++.+.+|-..|-.||.|++.+|-.| ++|+||||.|+++.+|+.||..|||..|.-++++|..
T Consensus 283 PeGCNlFIYHL-PQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQL 361 (371)
T KOG0146|consen 283 PEGCNLFIYHL-PQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQL 361 (371)
T ss_pred CCcceEEEEeC-chhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhh
Confidence 55689999999 999999999999999999999999777 7999999999999999999999999999999999998
Q ss_pred cccCCCC
Q 007955 447 YKEKGKV 453 (583)
Q Consensus 447 Ak~K~k~ 453 (583)
.++|..+
T Consensus 362 KRPkdan 368 (371)
T KOG0146|consen 362 KRPKDAN 368 (371)
T ss_pred cCccccC
Confidence 8877653
No 68
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.48 E-value=2e-07 Score=102.21 Aligned_cols=77 Identities=23% Similarity=0.323 Sum_probs=71.6
Q ss_pred CCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEec
Q 007955 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (583)
Q Consensus 372 ~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~A 447 (583)
..+.|||.+| ...+...||+.+|++||+|+-.+|++. -.|+|||||+.+.++|.+||+.|+...|.||.|.|..+
T Consensus 404 ~gRNlWVSGL-SstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 404 LGRNLWVSGL-SSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred cccceeeecc-ccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 3578999999 888889999999999999999999997 36899999999999999999999999999999999998
Q ss_pred cc
Q 007955 448 KE 449 (583)
Q Consensus 448 k~ 449 (583)
+.
T Consensus 483 KN 484 (940)
T KOG4661|consen 483 KN 484 (940)
T ss_pred cc
Confidence 74
No 69
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.42 E-value=3.5e-07 Score=96.27 Aligned_cols=78 Identities=14% Similarity=0.247 Sum_probs=72.8
Q ss_pred CCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 007955 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (583)
Q Consensus 371 ~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~ 446 (583)
+...+|||..+ ..+++|+||+..|+.||+|.+|.+.++ .+||||||+|.+..+...|+..||-..|.|.-++|..
T Consensus 208 k~fnRiYVaSv-HpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk 286 (544)
T KOG0124|consen 208 KKFNRIYVASV-HPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGK 286 (544)
T ss_pred HhhheEEeeec-CCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccc
Confidence 45679999999 889999999999999999999999886 6999999999999999999999999999999999988
Q ss_pred ccc
Q 007955 447 YKE 449 (583)
Q Consensus 447 Ak~ 449 (583)
+..
T Consensus 287 ~vT 289 (544)
T KOG0124|consen 287 CVT 289 (544)
T ss_pred ccC
Confidence 754
No 70
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.40 E-value=6.2e-07 Score=100.84 Aligned_cols=74 Identities=22% Similarity=0.308 Sum_probs=68.7
Q ss_pred cEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc-------CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 007955 374 RQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ-------QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (583)
Q Consensus 374 rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D-------ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~ 446 (583)
++|||.|| .+++|.++|...|...|.|.+|.|.+- .|.|||||.|.+.++|+.|++.|+++.|+|+.|.|+.
T Consensus 516 t~lfvkNl-nf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~ 594 (725)
T KOG0110|consen 516 TKLFVKNL-NFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKI 594 (725)
T ss_pred hhhhhhcC-CcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEe
Confidence 34999999 999999999999999999999999763 2459999999999999999999999999999999999
Q ss_pred cc
Q 007955 447 YK 448 (583)
Q Consensus 447 Ak 448 (583)
+.
T Consensus 595 S~ 596 (725)
T KOG0110|consen 595 SE 596 (725)
T ss_pred cc
Confidence 87
No 71
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.37 E-value=7e-07 Score=100.27 Aligned_cols=81 Identities=20% Similarity=0.301 Sum_probs=75.2
Q ss_pred CCCCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc-------CCCceEEEEECCHHHHHHHHHhCCCeEEcCe
Q 007955 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ-------QKRMFGFVTFVYPETVKIILAKGNPHFVCDA 440 (583)
Q Consensus 368 ~~~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D-------ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR 440 (583)
..++.++.+||||| +..++|+.|-..|+.||+|..|+|+.- +-+.||||.|-+..+|++|++.|++.++.++
T Consensus 169 dgDP~TTNlyv~Nl-npsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~ 247 (877)
T KOG0151|consen 169 DGDPQTTNLYVGNL-NPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEY 247 (877)
T ss_pred CCCCcccceeeecC-CccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeee
Confidence 44688999999999 999999999999999999999999873 5789999999999999999999999999999
Q ss_pred EEEEEeccc
Q 007955 441 RVLVKPYKE 449 (583)
Q Consensus 441 ~V~Vk~Ak~ 449 (583)
.+++.|.+.
T Consensus 248 e~K~gWgk~ 256 (877)
T KOG0151|consen 248 EMKLGWGKA 256 (877)
T ss_pred eeeeccccc
Confidence 999999853
No 72
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.33 E-value=3.9e-07 Score=102.44 Aligned_cols=80 Identities=21% Similarity=0.380 Sum_probs=73.9
Q ss_pred CCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEec
Q 007955 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (583)
Q Consensus 372 ~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~A 447 (583)
..++|.|.|| ++..+-.+|+.+|..||.|.+|+|+.- .+||||||+|.++.+|.+|+..+....|.||++.+.||
T Consensus 612 ~~tKIlVRNi-pFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA 690 (725)
T KOG0110|consen 612 KGTKILVRNI-PFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWA 690 (725)
T ss_pred ccceeeeecc-chHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehh
Confidence 3469999999 999999999999999999999999873 47999999999999999999999999999999999999
Q ss_pred ccCCC
Q 007955 448 KEKGK 452 (583)
Q Consensus 448 k~K~k 452 (583)
.....
T Consensus 691 ~~d~~ 695 (725)
T KOG0110|consen 691 KSDNT 695 (725)
T ss_pred ccchH
Confidence 87654
No 73
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.31 E-value=5.9e-07 Score=96.57 Aligned_cols=83 Identities=22% Similarity=0.398 Sum_probs=75.8
Q ss_pred CCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 007955 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (583)
Q Consensus 370 ~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D---ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~ 446 (583)
.....+|||.|+ +..++++.|+++|+.||+|..++|+.+ +++|||||.|...++|.+|+..||+..+.++.+.|.+
T Consensus 267 ~~~~~nl~vknl-d~~~~~e~L~~~f~~~GeI~s~kv~~~~~g~skG~gfV~fs~~eeA~~A~~~~n~~~i~~k~l~vav 345 (369)
T KOG0123|consen 267 SLQGANLYVKNL-DETLSDEKLRKIFSSFGEITSAKVMVDENGKSKGFGFVEFSSPEEAKKAMTEMNGRLIGGKPLYVAV 345 (369)
T ss_pred cccccccccccC-ccccchhHHHHHHhcccceeeEEEEeccCCCccceEEEEcCCHHHHHHHHHhhChhhhcCCchhhhH
Confidence 345679999999 999999999999999999999999886 8999999999999999999999999999999999999
Q ss_pred cccCCCC
Q 007955 447 YKEKGKV 453 (583)
Q Consensus 447 Ak~K~k~ 453 (583)
++.+...
T Consensus 346 ~qr~~~r 352 (369)
T KOG0123|consen 346 AQRKEDR 352 (369)
T ss_pred Hhhhccc
Confidence 8844433
No 74
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.29 E-value=1.3e-06 Score=93.71 Aligned_cols=78 Identities=18% Similarity=0.075 Sum_probs=70.4
Q ss_pred CCCCCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc-CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEE
Q 007955 367 GIVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ-QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (583)
Q Consensus 367 g~~~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D-ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk 445 (583)
....+...+|||.|| |+++|++.|++-|..||.|..+.|+.. ++|| .|.|.++++|++|+..|++..|+||.|.|.
T Consensus 530 ~gaarKa~qIiirNl-P~dfTWqmlrDKfre~G~v~yadime~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~ 606 (608)
T KOG4212|consen 530 VGAARKACQIIIRNL-PFDFTWQMLRDKFREIGHVLYADIMENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVT 606 (608)
T ss_pred ccccccccEEEEecC-CccccHHHHHHHHHhccceehhhhhccCCccc--eEEecCHHHHHHHHHHhccCcccCceeeee
Confidence 345567789999999 999999999999999999999999664 6776 899999999999999999999999999997
Q ss_pred ec
Q 007955 446 PY 447 (583)
Q Consensus 446 ~A 447 (583)
++
T Consensus 607 y~ 608 (608)
T KOG4212|consen 607 YF 608 (608)
T ss_pred eC
Confidence 63
No 75
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.28 E-value=1.4e-06 Score=86.08 Aligned_cols=78 Identities=21% Similarity=0.340 Sum_probs=69.7
Q ss_pred CCcEEEEeCCCCCCCCHHHHHHHHhhc-CCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 007955 372 ASRQIYLTFPADSTFREEDVSNYFSIY-GPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (583)
Q Consensus 372 ~~rtIYVgnL~~~~~tEedLre~FsqF-G~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~ 446 (583)
...-+||..+ +.-+-|..+..+|.+| |.|..+++-+. .|||||||+|++++.|+-|.+.||+.-|.|+.+.|..
T Consensus 48 ~~g~~~~~~~-p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~v 126 (214)
T KOG4208|consen 48 IEGVVYVDHI-PHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHV 126 (214)
T ss_pred Cccceeeccc-ccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEE
Confidence 3567899999 9999999999999999 78888888665 6999999999999999999999999999999999887
Q ss_pred cccC
Q 007955 447 YKEK 450 (583)
Q Consensus 447 Ak~K 450 (583)
--+.
T Consensus 127 mppe 130 (214)
T KOG4208|consen 127 MPPE 130 (214)
T ss_pred eCch
Confidence 6655
No 76
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.27 E-value=4.9e-07 Score=90.02 Aligned_cols=80 Identities=21% Similarity=0.203 Sum_probs=72.3
Q ss_pred CCCCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEE
Q 007955 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (583)
Q Consensus 368 ~~~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D---ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~V 444 (583)
...+..+||||+|+ ...++|+-|.++|-+-|+|.+|.|+.+ +.| ||||.|.++-.+..|++.||+..+.++.+.|
T Consensus 4 aaae~drtl~v~n~-~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~ 81 (267)
T KOG4454|consen 4 AAAEMDRTLLVQNM-YSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQR 81 (267)
T ss_pred CCcchhhHHHHHhh-hhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhc
Confidence 34466899999999 999999999999999999999999886 345 9999999999999999999999999999999
Q ss_pred Eeccc
Q 007955 445 KPYKE 449 (583)
Q Consensus 445 k~Ak~ 449 (583)
+.-.-
T Consensus 82 ~~r~G 86 (267)
T KOG4454|consen 82 TLRCG 86 (267)
T ss_pred ccccC
Confidence 87643
No 77
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.23 E-value=1.1e-06 Score=89.09 Aligned_cols=86 Identities=14% Similarity=0.218 Sum_probs=76.2
Q ss_pred CCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 007955 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (583)
Q Consensus 371 ~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~ 446 (583)
....+||.|.| ..+++.+.|.+.|.+|-.-...++++| +++|||||.|.+.+++..|+.+||+..++.|.|+...
T Consensus 188 ~~DfRIfcgdl-gNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRk 266 (290)
T KOG0226|consen 188 EDDFRIFCGDL-GNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRK 266 (290)
T ss_pred cccceeecccc-cccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhh
Confidence 45679999999 889999999999999999999999998 7999999999999999999999999999999999877
Q ss_pred cccCCCCchHH
Q 007955 447 YKEKGKVPDKY 457 (583)
Q Consensus 447 Ak~K~k~~~~~ 457 (583)
...|.++....
T Consensus 267 S~wkeRn~dvv 277 (290)
T KOG0226|consen 267 SEWKERNLDVV 277 (290)
T ss_pred hhHHhhhhHHH
Confidence 65555544433
No 78
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.21 E-value=2.4e-06 Score=93.07 Aligned_cols=75 Identities=17% Similarity=0.334 Sum_probs=67.2
Q ss_pred CcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEec----cCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEecc
Q 007955 373 SRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPY----QQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (583)
Q Consensus 373 ~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~----DksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~Ak 448 (583)
..+|||++| +.++++.+|+++|.+||+|+..+|.. ++..+||||+|.+.++++.|+.+ +...|+++++.|+.-+
T Consensus 288 ~~~i~V~nl-P~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 288 GLGIFVKNL-PPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKR 365 (419)
T ss_pred ccceEeecC-CCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecc
Confidence 345999999 99999999999999999999998855 35559999999999999999999 7999999999998765
Q ss_pred c
Q 007955 449 E 449 (583)
Q Consensus 449 ~ 449 (583)
.
T Consensus 366 ~ 366 (419)
T KOG0116|consen 366 P 366 (419)
T ss_pred c
Confidence 5
No 79
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.18 E-value=1.5e-06 Score=87.07 Aligned_cols=71 Identities=25% Similarity=0.456 Sum_probs=66.3
Q ss_pred cEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEeccc
Q 007955 374 RQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (583)
Q Consensus 374 rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~Ak~ 449 (583)
.++|||+| ++...+.||.++|..||+|.+|.+. .|||||.|.+.-+|..|+..+|+.+|+|-++.|.++..
T Consensus 2 ~rv~vg~~-~~~~~~~d~E~~f~~yg~~~d~~mk----~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~ 72 (216)
T KOG0106|consen 2 PRVYIGRL-PYRARERDVERFFKGYGKIPDADMK----NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARG 72 (216)
T ss_pred Cceeeccc-CCccchhHHHHHHhhccccccceee----cccceeccCchhhhhcccchhcCceecceeeeeecccc
Confidence 47999999 9999999999999999999999874 58999999999999999999999999999988888874
No 80
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.11 E-value=9.3e-06 Score=82.77 Aligned_cols=80 Identities=13% Similarity=0.138 Sum_probs=72.9
Q ss_pred CCCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEE
Q 007955 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (583)
Q Consensus 369 ~~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D---ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk 445 (583)
......+|+|.|| ++.++++||+++|.+||++..|-|-+| ++.|.|=|+|...++|.+|++.+++.-++|+.+.+.
T Consensus 79 ~~~~~~~v~v~NL-~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~ 157 (243)
T KOG0533|consen 79 NETRSTKVNVSNL-PYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIE 157 (243)
T ss_pred cCCCcceeeeecC-CcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeE
Confidence 3445689999999 999999999999999999999999888 688999999999999999999999999999999887
Q ss_pred eccc
Q 007955 446 PYKE 449 (583)
Q Consensus 446 ~Ak~ 449 (583)
....
T Consensus 158 ~i~~ 161 (243)
T KOG0533|consen 158 IISS 161 (243)
T ss_pred EecC
Confidence 7643
No 81
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.96 E-value=9.8e-06 Score=82.13 Aligned_cols=78 Identities=14% Similarity=0.164 Sum_probs=72.2
Q ss_pred CCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 007955 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (583)
Q Consensus 371 ~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~ 446 (583)
...+.+|||++ ++..|-+.+..+|+.||.|..|.|++| ++|||+||.|.+.+.+..|+. ||+..|.|+.+.|.+
T Consensus 99 ~d~~sv~v~nv-d~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 99 VDAPSVWVGNV-DFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTL 176 (231)
T ss_pred cCCceEEEecc-ccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeee
Confidence 44689999999 999998889999999999999999998 579999999999999999999 899999999999998
Q ss_pred cccC
Q 007955 447 YKEK 450 (583)
Q Consensus 447 Ak~K 450 (583)
.+.+
T Consensus 177 ~r~~ 180 (231)
T KOG4209|consen 177 KRTN 180 (231)
T ss_pred eeee
Confidence 8766
No 82
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=97.87 E-value=1.1e-05 Score=87.67 Aligned_cols=83 Identities=12% Similarity=0.130 Sum_probs=65.5
Q ss_pred CCCCCCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEE
Q 007955 366 AGIVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (583)
Q Consensus 366 ~g~~~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk 445 (583)
.|-+....+.|-+.-.+..--+-++|..+|.+||+|..|.|-+ +---|.|||.+..+|-.|... .+..|++|.|+|.
T Consensus 365 ~g~~~~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~--~~~~a~vTF~t~aeag~a~~s-~~avlnnr~iKl~ 441 (526)
T KOG2135|consen 365 PGHAVVDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDY--SSLHAVVTFKTRAEAGEAYAS-HGAVLNNRFIKLF 441 (526)
T ss_pred CcchhcccchhhhhccCCCCchHhhhhhhhhhcCccccccccC--chhhheeeeeccccccchhcc-ccceecCceeEEE
Confidence 3455566666666666233446789999999999999999876 344699999999999888777 8999999999999
Q ss_pred ecccCC
Q 007955 446 PYKEKG 451 (583)
Q Consensus 446 ~Ak~K~ 451 (583)
|..+-.
T Consensus 442 whnps~ 447 (526)
T KOG2135|consen 442 WHNPSP 447 (526)
T ss_pred EecCCc
Confidence 987643
No 83
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.72 E-value=2.3e-05 Score=86.61 Aligned_cols=72 Identities=17% Similarity=0.225 Sum_probs=66.7
Q ss_pred CCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEE
Q 007955 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVL 443 (583)
Q Consensus 370 ~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~ 443 (583)
+...++|+|-+| +.++++++|+++|+.||+|.+|+.-. .++|-.||+|-|..+|++|++++++..|.|++++
T Consensus 72 ~~~~~~L~v~nl-~~~Vsn~~L~~~f~~yGeir~ir~t~-~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNL-PRSVSNDTLLRIFGAYGEIREIRETP-NKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEec-CCcCCHHHHHHHHHhhcchhhhhccc-ccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 456799999999 99999999999999999999987644 3789999999999999999999999999999998
No 84
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.52 E-value=0.00032 Score=70.51 Aligned_cols=82 Identities=13% Similarity=0.163 Sum_probs=68.9
Q ss_pred CCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEec-cC----CCceEEEEECCHHHHHHHHHhCCCeEEc---CeEEE
Q 007955 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPY-QQ----KRMFGFVTFVYPETVKIILAKGNPHFVC---DARVL 443 (583)
Q Consensus 372 ~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~-Dk----sRGfAFVtF~~~e~A~~Al~~mng~~L~---GR~V~ 443 (583)
..|||||.+| +.++.-.+|..+|..|---+.+.|-. ++ .+-+|||+|.+...|.+|+..+||..++ +..+.
T Consensus 33 ~VRTLFVSGL-P~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 33 AVRTLFVSGL-PNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred ccceeeeccC-CcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 4799999999 99999999999999996666665533 22 3469999999999999999999999985 88899
Q ss_pred EEecccCCCCc
Q 007955 444 VKPYKEKGKVP 454 (583)
Q Consensus 444 Vk~Ak~K~k~~ 454 (583)
+..|+...++.
T Consensus 112 iElAKSNtK~k 122 (284)
T KOG1457|consen 112 IELAKSNTKRK 122 (284)
T ss_pred eeehhcCcccc
Confidence 99998766543
No 85
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.50 E-value=0.00023 Score=75.14 Aligned_cols=77 Identities=10% Similarity=0.153 Sum_probs=68.7
Q ss_pred CCCcEEEEeCCCCCCCCHHHHHHHHhhcCCcee--------EEEecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcC
Q 007955 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQD--------VRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCD 439 (583)
Q Consensus 371 ~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~--------VrI~~D---ksRGfAFVtF~~~e~A~~Al~~mng~~L~G 439 (583)
..++.|||.|| |.++|-+++.++|+++|-|.. |++-.+ +-||=|.++|...++|..|+..|++..|.|
T Consensus 132 ~~Nt~VYVsgL-P~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg 210 (382)
T KOG1548|consen 132 KVNTSVYVSGL-PLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRG 210 (382)
T ss_pred ccCceEEecCC-CCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccC
Confidence 34567999999 999999999999999998864 555544 689999999999999999999999999999
Q ss_pred eEEEEEecc
Q 007955 440 ARVLVKPYK 448 (583)
Q Consensus 440 R~V~Vk~Ak 448 (583)
+.|.|..|+
T Consensus 211 ~~~rVerAk 219 (382)
T KOG1548|consen 211 KKLRVERAK 219 (382)
T ss_pred cEEEEehhh
Confidence 999999985
No 86
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=97.44 E-value=2.6e-05 Score=53.58 Aligned_cols=23 Identities=48% Similarity=1.128 Sum_probs=18.1
Q ss_pred cceeecccc-cccCCCCCCccCCC
Q 007955 231 WRPCLYFAR-GYCKNGSSCRFVHG 253 (583)
Q Consensus 231 ~kpC~YFak-G~Ck~G~sCry~Hg 253 (583)
-++|.+|.+ |.|++|++|+|.|+
T Consensus 3 ~~~C~~f~~~g~C~~G~~C~f~H~ 26 (27)
T PF00642_consen 3 TKLCRFFMRTGTCPFGDKCRFAHG 26 (27)
T ss_dssp SSB-HHHHHTS--TTGGGSSSBSS
T ss_pred cccChhhccCCccCCCCCcCccCC
Confidence 479999988 99999999999995
No 87
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=97.19 E-value=0.00017 Score=79.86 Aligned_cols=76 Identities=22% Similarity=0.341 Sum_probs=69.7
Q ss_pred CCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 007955 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (583)
Q Consensus 371 ~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~ 446 (583)
...+|+|+-.+ .-..++.||.++|+.+|+|.+|+|+.| ++||.|+|+|.+.+.+..|+.. .|+-+.|..|.|..
T Consensus 177 Rd~Rtvf~~ql-a~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaL-sGqrllg~pv~vq~ 254 (549)
T KOG0147|consen 177 RDQRTVFCMQL-ARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIAL-SGQRLLGVPVIVQL 254 (549)
T ss_pred HhHHHHHHHHH-hhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhh-cCCcccCceeEecc
Confidence 45689999999 789999999999999999999999998 6999999999999999999965 99999999999987
Q ss_pred cc
Q 007955 447 YK 448 (583)
Q Consensus 447 Ak 448 (583)
..
T Consensus 255 sE 256 (549)
T KOG0147|consen 255 SE 256 (549)
T ss_pred cH
Confidence 54
No 88
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.15 E-value=0.002 Score=57.41 Aligned_cols=77 Identities=12% Similarity=0.110 Sum_probs=64.2
Q ss_pred cEEEEeCCCCCCCCHHHHHHHHhh--cCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEc----CeEEE
Q 007955 374 RQIYLTFPADSTFREEDVSNYFSI--YGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVC----DARVL 443 (583)
Q Consensus 374 rtIYVgnL~~~~~tEedLre~Fsq--FG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~----GR~V~ 443 (583)
+||-|.|| |...|.++|.+++.. .|...-+.+|.| .+.|||||.|.+++.|.+-.+.++|+.+. .+.+.
T Consensus 2 TTvMirNI-Pn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~ 80 (97)
T PF04059_consen 2 TTVMIRNI-PNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCE 80 (97)
T ss_pred eeEEEecC-CCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEE
Confidence 68999999 999999999988876 377777888888 47899999999999999999999888774 56677
Q ss_pred EEecccCC
Q 007955 444 VKPYKEKG 451 (583)
Q Consensus 444 Vk~Ak~K~ 451 (583)
|.+|+-.+
T Consensus 81 i~yAriQG 88 (97)
T PF04059_consen 81 ISYARIQG 88 (97)
T ss_pred EehhHhhC
Confidence 77776443
No 89
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.12 E-value=0.0015 Score=71.79 Aligned_cols=78 Identities=18% Similarity=0.226 Sum_probs=68.1
Q ss_pred CCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc--CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEecc
Q 007955 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ--QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (583)
Q Consensus 371 ~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D--ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~Ak 448 (583)
....-|=+.+| +|+.|++||.+||+-++ |+.+.+++. +..|=|||+|.+++++++|+++ +...+..|-|.|-.+.
T Consensus 8 ~~~~~vr~rGL-Pwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alkk-dR~~mg~RYIEVf~~~ 84 (510)
T KOG4211|consen 8 STAFEVRLRGL-PWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALKK-DRESMGHRYIEVFTAG 84 (510)
T ss_pred CcceEEEecCC-CccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHHh-hHHHhCCceEEEEccC
Confidence 34556778899 99999999999999994 888888775 7889999999999999999999 9999999999998775
Q ss_pred cCC
Q 007955 449 EKG 451 (583)
Q Consensus 449 ~K~ 451 (583)
.+.
T Consensus 85 ~~e 87 (510)
T KOG4211|consen 85 GAE 87 (510)
T ss_pred Ccc
Confidence 544
No 90
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.04 E-value=0.00039 Score=69.92 Aligned_cols=70 Identities=23% Similarity=0.237 Sum_probs=62.9
Q ss_pred CCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEE
Q 007955 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (583)
Q Consensus 371 ~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk 445 (583)
.+...+.|.++ ...+.+.+|.++|..||++..+.+ .++++||.|..+++|.+|++.+++..+.|+.|.+.
T Consensus 97 ~s~~r~~~~~~-~~r~~~qdl~d~~~~~g~~~~~~~----~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~ 166 (216)
T KOG0106|consen 97 RTHFRLIVRNL-SLRVSWQDLKDHFRPAGEVTYVDA----RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVE 166 (216)
T ss_pred cccceeeeccc-hhhhhHHHHhhhhcccCCCchhhh----hccccceeehhhhhhhhcchhccchhhcCceeeec
Confidence 45678889999 888999999999999999966554 57899999999999999999999999999999993
No 91
>smart00356 ZnF_C3H1 zinc finger.
Probab=97.03 E-value=0.00032 Score=47.15 Aligned_cols=22 Identities=45% Similarity=1.216 Sum_probs=20.6
Q ss_pred ceeecccccccCCCCCCccCCC
Q 007955 232 RPCLYFARGYCKNGSSCRFVHG 253 (583)
Q Consensus 232 kpC~YFakG~Ck~G~sCry~Hg 253 (583)
.+|.+|.+|.|.+|.+|+|.|.
T Consensus 5 ~~C~~~~~g~C~~g~~C~~~H~ 26 (27)
T smart00356 5 ELCKFFKRGYCPYGDRCKFAHP 26 (27)
T ss_pred CcCcCccCCCCCCCCCcCCCCc
Confidence 4899999999999999999994
No 92
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.02 E-value=0.002 Score=69.53 Aligned_cols=76 Identities=14% Similarity=0.259 Sum_probs=70.3
Q ss_pred CcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEeccc
Q 007955 373 SRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (583)
Q Consensus 373 ~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~Ak~ 449 (583)
+..|-|.+|-...+|.+.|..+|+-||.|.+|+|.+.+ +--|.|.|.+...|+.|++.++++.|.|++|+|...+-
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk-kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH 372 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK-KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKH 372 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC-CcceeeeecchhHHHHHHHHhhcceecCceEEEeeccC
Confidence 67899999977899999999999999999999999864 47899999999999999999999999999999998764
No 93
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.95 E-value=0.002 Score=51.01 Aligned_cols=52 Identities=15% Similarity=0.281 Sum_probs=42.8
Q ss_pred cEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEeccCCCceEEEEECCHHHHHHHH
Q 007955 374 RQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIIL 429 (583)
Q Consensus 374 rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~DksRGfAFVtF~~~e~A~~Al 429 (583)
+.|-|.|. +... .+.+.++|.+||+|+++.+.. ..-+.+|+|.++.+|++||
T Consensus 2 ~wI~V~Gf-~~~~-~~~vl~~F~~fGeI~~~~~~~--~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGF-PPDL-AEEVLEHFASFGEIVDIYVPE--STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeE-CchH-HHHHHHHHHhcCCEEEEEcCC--CCcEEEEEECCHHHHHhhC
Confidence 56778888 4333 466777999999999999884 6779999999999999985
No 94
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.88 E-value=0.0021 Score=67.99 Aligned_cols=80 Identities=15% Similarity=0.219 Sum_probs=62.3
Q ss_pred CCCcEEEEeCCCCCCCCHH---HH--HHHHhhcCCceeEEEecc-----CCCc-eE-EEEECCHHHHHHHHHhCCCeEEc
Q 007955 371 PASRQIYLTFPADSTFREE---DV--SNYFSIYGPVQDVRIPYQ-----QKRM-FG-FVTFVYPETVKIILAKGNPHFVC 438 (583)
Q Consensus 371 ~~~rtIYVgnL~~~~~tEe---dL--re~FsqFG~V~~VrI~~D-----ksRG-fA-FVtF~~~e~A~~Al~~mng~~L~ 438 (583)
..+.-+||-+|++.-..|+ -| .+||++||+|.+|.|-+- .-.+ +| +|||...|+|.+|+.+.++..++
T Consensus 112 vQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~D 191 (480)
T COG5175 112 VQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLD 191 (480)
T ss_pred eecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcccccc
Confidence 3456799999955555555 23 489999999999988552 1112 33 99999999999999999999999
Q ss_pred CeEEEEEecccC
Q 007955 439 DARVLVKPYKEK 450 (583)
Q Consensus 439 GR~V~Vk~Ak~K 450 (583)
||.|+..+...|
T Consensus 192 Gr~lkatYGTTK 203 (480)
T COG5175 192 GRVLKATYGTTK 203 (480)
T ss_pred CceEeeecCchH
Confidence 999998776543
No 95
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=96.84 E-value=0.00062 Score=71.15 Aligned_cols=79 Identities=19% Similarity=0.333 Sum_probs=71.1
Q ss_pred CcEEE-EeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEec
Q 007955 373 SRQIY-LTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (583)
Q Consensus 373 ~rtIY-VgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~A 447 (583)
..++| |+++ ++.+++++|+.+|..+|.|..|+++.+ ..+|||+|.|........++.. ..+.+.++.+.+...
T Consensus 184 s~~~~~~~~~-~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 261 (285)
T KOG4210|consen 184 SDTIFFVGEL-DFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEED 261 (285)
T ss_pred cccceeeccc-ccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccC
Confidence 45666 9999 999999999999999999999999886 6899999999999999999987 889999999999887
Q ss_pred ccCCCC
Q 007955 448 KEKGKV 453 (583)
Q Consensus 448 k~K~k~ 453 (583)
.++...
T Consensus 262 ~~~~~~ 267 (285)
T KOG4210|consen 262 EPRPKS 267 (285)
T ss_pred CCCccc
Confidence 776544
No 96
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=96.77 E-value=0.005 Score=53.70 Aligned_cols=71 Identities=11% Similarity=0.052 Sum_probs=47.3
Q ss_pred cEEEEeCCCCCCCCHHHH----HHHHhhc-CCceeEEEeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEecc
Q 007955 374 RQIYLTFPADSTFREEDV----SNYFSIY-GPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (583)
Q Consensus 374 rtIYVgnL~~~~~tEedL----re~FsqF-G~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~Ak 448 (583)
..|||.|| |.+.+-..| +.++.-+ |+|..| +.+-|.|.|.+++.|++|.+.|++..+.|++|.|.+..
T Consensus 3 s~L~V~NL-P~~~d~~~I~~RL~qLsdNCGGkVl~v------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~ 75 (90)
T PF11608_consen 3 SLLYVSNL-PTNKDPSSIKNRLRQLSDNCGGKVLSV------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSP 75 (90)
T ss_dssp EEEEEES---TTS-HHHHHHHHHHHHHTTT--EEE--------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS-
T ss_pred cEEEEecC-CCCCCHHHHHHHHHHHhhccCCEEEEE------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcC
Confidence 57999999 777776554 4555555 688887 46899999999999999999999999999999999875
Q ss_pred cCC
Q 007955 449 EKG 451 (583)
Q Consensus 449 ~K~ 451 (583)
...
T Consensus 76 ~~r 78 (90)
T PF11608_consen 76 KNR 78 (90)
T ss_dssp -S-
T ss_pred Ccc
Confidence 433
No 97
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=96.63 E-value=0.011 Score=62.96 Aligned_cols=84 Identities=14% Similarity=0.122 Sum_probs=67.6
Q ss_pred CCCCCCcEEEEeCCCCC---CCC-------HHHHHHHHhhcCCceeEEEeccCCCceEEEEECCHHHHHHHHHhCCCeEE
Q 007955 368 IVNPASRQIYLTFPADS---TFR-------EEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFV 437 (583)
Q Consensus 368 ~~~~~~rtIYVgnL~~~---~~t-------EedLre~FsqFG~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~mng~~L 437 (583)
......++|.+.|+-.. ..+ .+||++--++||.|.+|.|---...|.+-|.|.+.++|..||..|+|..+
T Consensus 260 sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~f 339 (382)
T KOG1548|consen 260 SKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWF 339 (382)
T ss_pred ccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeee
Confidence 34456789999998211 222 36677778999999999765336889999999999999999999999999
Q ss_pred cCeEEEEEecccCC
Q 007955 438 CDARVLVKPYKEKG 451 (583)
Q Consensus 438 ~GR~V~Vk~Ak~K~ 451 (583)
+||.|....+-.+.
T Consensus 340 dgRql~A~i~DG~t 353 (382)
T KOG1548|consen 340 DGRQLTASIWDGKT 353 (382)
T ss_pred cceEEEEEEeCCcc
Confidence 99999998876544
No 98
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=96.62 E-value=0.0017 Score=72.30 Aligned_cols=80 Identities=16% Similarity=0.293 Sum_probs=73.7
Q ss_pred CCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEec
Q 007955 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (583)
Q Consensus 372 ~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~A 447 (583)
...+|||++| +..+++..+++....||++...+++.| -++||||.+|.+......|++.+||..+.++++.|..|
T Consensus 288 ~~~ki~v~~l-p~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A 366 (500)
T KOG0120|consen 288 SPNKIFVGGL-PLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRA 366 (500)
T ss_pred ccchhhhccC-cCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehh
Confidence 4578999999 999999999999999999999999887 58999999999999999999999999999999999988
Q ss_pred ccCCC
Q 007955 448 KEKGK 452 (583)
Q Consensus 448 k~K~k 452 (583)
.....
T Consensus 367 ~~g~~ 371 (500)
T KOG0120|consen 367 IVGAS 371 (500)
T ss_pred hccch
Confidence 75443
No 99
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=96.47 E-value=0.0049 Score=55.37 Aligned_cols=55 Identities=25% Similarity=0.309 Sum_probs=37.3
Q ss_pred EEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEeccCCCceEEEEECCHHHHHHHHHhC
Q 007955 375 QIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKG 432 (583)
Q Consensus 375 tIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~m 432 (583)
-|.|.++ ...++-++|++.|++||+|..|.+.. .---|+|.|.+.+.|+.|++.+
T Consensus 3 il~~~g~-~~~~~re~iK~~f~~~g~V~yVD~~~--G~~~g~VRf~~~~~A~~a~~~~ 57 (105)
T PF08777_consen 3 ILKFSGL-GEPTSREDIKEAFSQFGEVAYVDFSR--GDTEGYVRFKTPEAAQKALEKL 57 (105)
T ss_dssp EEEEEE---SS--HHHHHHHT-SS--EEEEE--T--T-SEEEEEESS---HHHHHHHH
T ss_pred EEEEecC-CCCcCHHHHHHHHHhcCCcceEEecC--CCCEEEEEECCcchHHHHHHHH
Confidence 4677888 88899999999999999999999877 4558999999999999999876
No 100
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.36 E-value=0.017 Score=51.74 Aligned_cols=71 Identities=20% Similarity=0.214 Sum_probs=51.9
Q ss_pred CcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEE-------------EeccCCCceEEEEECCHHHHHHHHHhCCCeEEcC
Q 007955 373 SRQIYLTFPADSTFREEDVSNYFSIYGPVQDVR-------------IPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCD 439 (583)
Q Consensus 373 ~rtIYVgnL~~~~~tEedLre~FsqFG~V~~Vr-------------I~~DksRGfAFVtF~~~e~A~~Al~~mng~~L~G 439 (583)
.+-|.|=+. +.. ....|-++|++||+|.+.. ++. ...+--|+|.++.+|.+||.+ ||..|.|
T Consensus 6 ~~wVtVFGf-p~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~--~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g 80 (100)
T PF05172_consen 6 ETWVTVFGF-PPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPS--GGNWIHITYDNPLSAQRALQK-NGTIFSG 80 (100)
T ss_dssp CCEEEEE----GG-GHHHHHHHHHCCS-EECEEGGG----------E-C--CTTEEEEEESSHHHHHHHHTT-TTEEETT
T ss_pred CeEEEEEcc-CHH-HHHHHHHHHHhcceEEEeecccccccccccccCCC--CCCEEEEECCCHHHHHHHHHh-CCeEEcC
Confidence 345666666 333 5677889999999999885 443 678999999999999999999 9999998
Q ss_pred eEE-EEEecc
Q 007955 440 ARV-LVKPYK 448 (583)
Q Consensus 440 R~V-~Vk~Ak 448 (583)
.-+ -|++..
T Consensus 81 ~~mvGV~~~~ 90 (100)
T PF05172_consen 81 SLMVGVKPCD 90 (100)
T ss_dssp CEEEEEEE-H
T ss_pred cEEEEEEEcH
Confidence 654 466653
No 101
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=96.16 E-value=0.012 Score=65.83 Aligned_cols=61 Identities=25% Similarity=0.298 Sum_probs=53.4
Q ss_pred HHHHHHHhhcCCceeEEEecc-------CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEeccc
Q 007955 389 EDVSNYFSIYGPVQDVRIPYQ-------QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (583)
Q Consensus 389 edLre~FsqFG~V~~VrI~~D-------ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~Ak~ 449 (583)
|||+.-+++||.|..|.|+.+ -.-|.-||+|.+.+++++|.++|+|..+.||.|...++-+
T Consensus 424 Edvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 424 EDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred HHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 566777889999999999885 2557779999999999999999999999999999988753
No 102
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=96.13 E-value=0.029 Score=62.02 Aligned_cols=76 Identities=20% Similarity=0.226 Sum_probs=64.6
Q ss_pred CCCcEEEEeCCCCCCCCHHHHHHHHhhcCCcee-EEEecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 007955 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQD-VRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (583)
Q Consensus 371 ~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~-VrI~~D---ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~ 446 (583)
.....|=+.+| |+.+||+||.+||+-.=-|.+ |.++.| ++-|=|||.|++.+.|++|+.. +...|.-|-|.|-.
T Consensus 101 ~~d~vVRLRGL-Pfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~ 178 (510)
T KOG4211|consen 101 ANDGVVRLRGL-PFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFR 178 (510)
T ss_pred CCCceEEecCC-CccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeeh
Confidence 45678889999 999999999999998766655 445555 6779999999999999999999 88899999999976
Q ss_pred cc
Q 007955 447 YK 448 (583)
Q Consensus 447 Ak 448 (583)
+.
T Consensus 179 Ss 180 (510)
T KOG4211|consen 179 SS 180 (510)
T ss_pred hH
Confidence 54
No 103
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.08 E-value=0.016 Score=64.24 Aligned_cols=76 Identities=21% Similarity=0.271 Sum_probs=62.6
Q ss_pred CCCcEEEEeCCCCCCCCHHHHHHHHh-hcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEE----cCeE
Q 007955 371 PASRQIYLTFPADSTFREEDVSNYFS-IYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFV----CDAR 441 (583)
Q Consensus 371 ~~~rtIYVgnL~~~~~tEedLre~Fs-qFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L----~GR~ 441 (583)
...+|||||+| +.-++.++|..+|. -||-|..|-|-.| -.||-|=|+|.+..+--+||++ --..| -.++
T Consensus 368 DprrTVFVGgv-prpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa-rFvql~h~d~~KR 445 (520)
T KOG0129|consen 368 DPRRTVFVGGL-PRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA-RFVQLDHTDIDKR 445 (520)
T ss_pred CccceEEecCC-CCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh-heEEEecccccee
Confidence 34789999999 99999999999999 7999999999888 3789999999999999999987 22222 2346
Q ss_pred EEEEecc
Q 007955 442 VLVKPYK 448 (583)
Q Consensus 442 V~Vk~Ak 448 (583)
|.|+++.
T Consensus 446 VEIkPYv 452 (520)
T KOG0129|consen 446 VEIKPYV 452 (520)
T ss_pred eeeccee
Confidence 6666654
No 104
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.06 E-value=0.012 Score=65.28 Aligned_cols=60 Identities=20% Similarity=0.325 Sum_probs=49.6
Q ss_pred CCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEec-c------CCCc---eEEEEECCHHHHHHHHHhC
Q 007955 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPY-Q------QKRM---FGFVTFVYPETVKIILAKG 432 (583)
Q Consensus 371 ~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~-D------ksRG---fAFVtF~~~e~A~~Al~~m 432 (583)
.-++|||||+| +++++|+.|...|..||.|. |..+. . ..+| |.|+.|+++..++.-+.+.
T Consensus 257 ~~S~KVFvGGl-p~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC 326 (520)
T KOG0129|consen 257 RYSRKVFVGGL-PWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSAC 326 (520)
T ss_pred ccccceeecCC-CccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHH
Confidence 45789999999 99999999999999999874 33331 1 3567 9999999999999877764
No 105
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type
Probab=95.96 E-value=0.0036 Score=39.80 Aligned_cols=18 Identities=44% Similarity=1.174 Sum_probs=16.6
Q ss_pred eeecccccccCCCCCCccCC
Q 007955 233 PCLYFARGYCKNGSSCRFVH 252 (583)
Q Consensus 233 pC~YFakG~Ck~G~sCry~H 252 (583)
+|.||.. |++|++|.|.|
T Consensus 1 ~Ck~~~~--C~~~~~C~f~H 18 (19)
T PF14608_consen 1 PCKFGPN--CTNGDNCPFSH 18 (19)
T ss_pred CCcCcCC--CCCCCcCccCC
Confidence 6998877 99999999999
No 106
>PF00658 PABP: Poly-adenylate binding protein, unique domain; InterPro: IPR002004 The polyadenylate-binding protein (PABP) has a conserved C-terminal domain (PABC), which is also found in the hyperplastic discs protein (HYD) family of ubiquitin ligases that contain HECT domains (IPR000569 from INTERPRO) []. PABP recognises the 3' mRNA poly(A) tail and plays an essential role in eukaryotic translation initiation and mRNA stabilisation/degradation. PABC domains of PABP are peptide-binding domains that mediate PABP homo-oligomerisation and protein-protein interactions. In mammals, the PABC domain of PABP functions to recruit several different translation factors to the mRNA poly(A) tail [].; GO: 0003723 RNA binding; PDB: 3KUR_E 1JH4_A 2RQH_B 3KUI_A 3KUS_A 3KUJ_A 3KTR_A 2X04_A 3PTH_A 1JGN_A ....
Probab=95.93 E-value=0.0074 Score=50.96 Aligned_cols=50 Identities=28% Similarity=0.464 Sum_probs=40.2
Q ss_pred HHHHHhhhccCCCchhhhHhhhhcccCChhhHHHHhcCchHHHHHHHHHHHHH
Q 007955 8 RIVFSRIQNLDPENASKIMGLLLLQDHGEKEMIRLAFGPEALVHSVILKARKE 60 (583)
Q Consensus 8 ~~v~~riq~~~pe~a~ki~g~ll~qd~~e~emirla~gpd~l~~~~i~~ak~~ 60 (583)
..+|.+|++++|++|.||-|+|| |....|++.|=-.| .+|+..|..|-.-
T Consensus 22 e~Ly~~V~~~~p~~A~KITGMLL--e~~~~ell~ll~~~-~~L~~kv~eA~~v 71 (72)
T PF00658_consen 22 ERLYPLVQAIYPELAGKITGMLL--EMDNSELLHLLEDP-ELLREKVQEAIEV 71 (72)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHT--TSCHHHHHHHHHTH-HHHHHHHHHHHHH
T ss_pred ccccHHHHHhCcchhHHHHHHHh--cCCHHHHHHHhCCH-HHHHHHHHHHHHh
Confidence 45799999999999999999998 46678888887775 5667777777543
No 107
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=95.93 E-value=0.029 Score=56.58 Aligned_cols=77 Identities=16% Similarity=0.201 Sum_probs=66.6
Q ss_pred CCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEeccCCCceEEEEECCHHHHHHHHHhCCCeEEc-CeEEEEEecc
Q 007955 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVC-DARVLVKPYK 448 (583)
Q Consensus 370 ~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~mng~~L~-GR~V~Vk~Ak 448 (583)
.+....+|+.+| +..++.+.+..+|.+|.--.+|+++.. .++.|||+|.+...|..|...+.+..|. ...+.|..++
T Consensus 143 ~ppn~ilf~~ni-P~es~~e~l~~lf~qf~g~keir~i~~-~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 143 APPNNILFLTNI-PSESESEMLSDLFEQFPGFKEIRLIPP-RSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred CCCceEEEEecC-CcchhHHHHHHHHhhCcccceeEeccC-CCceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 567889999999 999999999999999999999998764 5789999999999999999988776665 7777776654
No 108
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=95.91 E-value=0.017 Score=66.04 Aligned_cols=81 Identities=16% Similarity=0.137 Sum_probs=68.8
Q ss_pred CCCcEEEEeCCCCCCCCHHHHHHHHhhcCCcee-EEE---eccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 007955 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQD-VRI---PYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (583)
Q Consensus 371 ~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~-VrI---~~DksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~ 446 (583)
.....|||..| +..+++.++-++|..--.|++ |.| ++|+-++-|||.|..++++..|+.-...+++..|.|.|..
T Consensus 432 ~ag~~lyv~~l-P~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~s 510 (944)
T KOG4307|consen 432 GAGGALYVFQL-PVMTPIVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDS 510 (944)
T ss_pred CccceEEeccC-CccccccchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEeec
Confidence 45678999999 999999999999999888888 665 4468899999999999888888877788899999999987
Q ss_pred cccCCC
Q 007955 447 YKEKGK 452 (583)
Q Consensus 447 Ak~K~k 452 (583)
..++.-
T Consensus 511 i~~~~m 516 (944)
T KOG4307|consen 511 IADYAM 516 (944)
T ss_pred hhhHHH
Confidence 655443
No 109
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=95.65 E-value=0.013 Score=62.38 Aligned_cols=82 Identities=13% Similarity=0.174 Sum_probs=71.3
Q ss_pred CCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCcee--------EEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEE
Q 007955 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQD--------VRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFV 437 (583)
Q Consensus 370 ~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~--------VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L 437 (583)
....-+|||-++ +..+++++|.++|.++|.|.. |.|-+| +.||=|-|+|+++-.|+.|+.-.++..+
T Consensus 63 ~s~~~ti~v~g~-~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf 141 (351)
T KOG1995|consen 63 KSDNETIFVWGC-PDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDF 141 (351)
T ss_pred ccccccceeecc-CccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccc
Confidence 355679999999 999999999999999999863 334344 6899999999999999999999999999
Q ss_pred cCeEEEEEecccCCC
Q 007955 438 CDARVLVKPYKEKGK 452 (583)
Q Consensus 438 ~GR~V~Vk~Ak~K~k 452 (583)
+|..|+|..|..+..
T Consensus 142 ~gn~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 142 CGNTIKVSLAERRTG 156 (351)
T ss_pred cCCCchhhhhhhccC
Confidence 999999998877664
No 110
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=95.56 E-value=0.02 Score=64.09 Aligned_cols=74 Identities=14% Similarity=0.183 Sum_probs=59.9
Q ss_pred CcEEEEeCCCCCCCCH-------HHHHHHHhhcCCceeEEEecc---CCCceEEEEECCHHHHHHHHHhCCCeEEc-CeE
Q 007955 373 SRQIYLTFPADSTFRE-------EDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVC-DAR 441 (583)
Q Consensus 373 ~rtIYVgnL~~~~~tE-------edLre~FsqFG~V~~VrI~~D---ksRGfAFVtF~~~e~A~~Al~~mng~~L~-GR~ 441 (583)
..-|+|.|+ | .+.. .-|.++|+++|+|+.+.++.+ ..+||.|+.|.+..+|+.|++.+||+.|+ ..+
T Consensus 58 D~vVvv~g~-P-vV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 58 DSVVVVDGA-P-VVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred ceEEEECCC-c-ccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 456888888 4 2332 346788999999999999976 68999999999999999999999999886 666
Q ss_pred EEEEecc
Q 007955 442 VLVKPYK 448 (583)
Q Consensus 442 V~Vk~Ak 448 (583)
..|...+
T Consensus 136 f~v~~f~ 142 (698)
T KOG2314|consen 136 FFVRLFK 142 (698)
T ss_pred EEeehhh
Confidence 6665544
No 111
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=95.30 E-value=0.0065 Score=65.66 Aligned_cols=26 Identities=42% Similarity=1.115 Sum_probs=24.4
Q ss_pred CcceeecccccccCCCCCCccCCCCC
Q 007955 230 GWRPCLYFARGYCKNGSSCRFVHGGE 255 (583)
Q Consensus 230 ~~kpC~YFakG~Ck~G~sCry~Hg~~ 255 (583)
..|||.||--|-|+.|++|||.||.+
T Consensus 139 sMkpC~ffLeg~CRF~enCRfSHG~~ 164 (486)
T KOG2185|consen 139 SMKPCKFFLEGRCRFGENCRFSHGLD 164 (486)
T ss_pred hhccchHhhccccccCcccccccCcc
Confidence 58999999999999999999999965
No 112
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=95.14 E-value=0.096 Score=56.49 Aligned_cols=79 Identities=15% Similarity=0.111 Sum_probs=70.4
Q ss_pred CCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEecccC
Q 007955 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEK 450 (583)
Q Consensus 371 ~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~Ak~K 450 (583)
....-+.|-+|....++-+.|-.+|-.||.|++|+.++- +-|-|.|++.+..++++|+..||+..+.|.+|.|+..+..
T Consensus 285 ~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkT-k~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ~ 363 (494)
T KOG1456|consen 285 APGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKT-KPGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQN 363 (494)
T ss_pred CCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeec-ccceeEEEcCcHHHHHHHHHHhccCccccceEEEeecccc
Confidence 445678999996667888999999999999999999883 6799999999999999999999999999999999988653
No 113
>smart00517 PolyA C-terminal domain of Poly(A)-binding protein. Present also in Drosophila hyperplastics discs protein. Involved in homodimerisation (either directly or indirectly)
Probab=95.11 E-value=0.014 Score=48.36 Aligned_cols=51 Identities=35% Similarity=0.544 Sum_probs=37.7
Q ss_pred HHHHHhhhccCCCchhhhHhhhhcccCChhhHHHHhcCchHHHHHHHHHHHHHh
Q 007955 8 RIVFSRIQNLDPENASKIMGLLLLQDHGEKEMIRLAFGPEALVHSVILKARKEL 61 (583)
Q Consensus 8 ~~v~~riq~~~pe~a~ki~g~ll~qd~~e~emirla~gpd~l~~~~i~~ak~~l 61 (583)
.-+|.+|++++|++|.||-|+||= .+..|++.|=-.++ +|.+-|..|-.-|
T Consensus 11 E~Lyp~V~~~~p~~A~KITGMLLE--md~~ell~lle~~~-~L~~kv~EA~~vl 61 (64)
T smart00517 11 ERLYPKVQALEPELAGKITGMLLE--MDNSELLHLLESPE-LLRSKVDEALEVL 61 (64)
T ss_pred HHHhHHHHhhCcccCCcCeeeeeC--CCHHHHHHHhcCHH-HHHHHHHHHHHHH
Confidence 347999999999999999999984 55578888755544 5555566554433
No 114
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=95.11 E-value=0.018 Score=62.76 Aligned_cols=63 Identities=22% Similarity=0.237 Sum_probs=54.6
Q ss_pred CCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEec------c-----------CCCceEEEEECCHHHHHHHHHhCC
Q 007955 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPY------Q-----------QKRMFGFVTFVYPETVKIILAKGN 433 (583)
Q Consensus 371 ~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~------D-----------ksRGfAFVtF~~~e~A~~Al~~mn 433 (583)
-.+|+|.+-+| +.+-.-+.|.++|+.+|.|..|+|.. | ..+-+|+|+|+..+.|.+|.+.|+
T Consensus 229 l~srtivaenL-P~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 229 LPSRTIVAENL-PLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred cccceEEEecC-CcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 46899999999 77777799999999999999999965 1 136789999999999999999975
Q ss_pred C
Q 007955 434 P 434 (583)
Q Consensus 434 g 434 (583)
.
T Consensus 308 ~ 308 (484)
T KOG1855|consen 308 P 308 (484)
T ss_pred h
Confidence 3
No 115
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=95.05 E-value=0.013 Score=60.14 Aligned_cols=69 Identities=20% Similarity=0.254 Sum_probs=58.6
Q ss_pred CCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc---------CCC-----c--eEEEEECCHHHHHHHHHhCCCe
Q 007955 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---------QKR-----M--FGFVTFVYPETVKIILAKGNPH 435 (583)
Q Consensus 372 ~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D---------ksR-----G--fAFVtF~~~e~A~~Al~~mng~ 435 (583)
...-||+++| |..+.-..|+++|++||+|-.|.+... +.+ . =|+|+|.+...|+++...||+.
T Consensus 73 k~GVvylS~I-Pp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~ 151 (278)
T KOG3152|consen 73 KTGVVYLSNI-PPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNT 151 (278)
T ss_pred cceEEEeccC-CCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCC
Confidence 3457999999 889999999999999999999998552 011 1 2899999999999999999999
Q ss_pred EEcCeE
Q 007955 436 FVCDAR 441 (583)
Q Consensus 436 ~L~GR~ 441 (583)
.|.|++
T Consensus 152 ~Iggkk 157 (278)
T KOG3152|consen 152 PIGGKK 157 (278)
T ss_pred ccCCCC
Confidence 999874
No 116
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=94.99 E-value=0.12 Score=49.40 Aligned_cols=76 Identities=18% Similarity=0.219 Sum_probs=54.7
Q ss_pred CCCCCCcEEEEeCCCC------CCCCH---HHHHHHHhhcCCceeEEEeccCCCceEEEEECCHHHHHHHHHhCCCeEEc
Q 007955 368 IVNPASRQIYLTFPAD------STFRE---EDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVC 438 (583)
Q Consensus 368 ~~~~~~rtIYVgnL~~------~~~tE---edLre~FsqFG~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~mng~~L~ 438 (583)
...|..-||.|.-. . ..+.+ .+|-+.|.+||+|.=||++. +-=+|||.+-+.|-+|+.. ++..++
T Consensus 22 ~~GPpDaTVvVsv~-~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~----~~mwVTF~dg~sALaals~-dg~~v~ 95 (146)
T PF08952_consen 22 SQGPPDATVVVSVD-SPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG----DTMWVTFRDGQSALAALSL-DGIQVN 95 (146)
T ss_dssp ----TT-EEEEEEC-S-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET----TCEEEEESSCHHHHHHHHG-CCSEET
T ss_pred hcCCCCceEEEEec-CCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC----CeEEEEECccHHHHHHHcc-CCcEEC
Confidence 33456778888777 4 23433 35677899999999999886 4679999999999999998 999999
Q ss_pred CeEEEEEeccc
Q 007955 439 DARVLVKPYKE 449 (583)
Q Consensus 439 GR~V~Vk~Ak~ 449 (583)
|+.|.|+...+
T Consensus 96 g~~l~i~LKtp 106 (146)
T PF08952_consen 96 GRTLKIRLKTP 106 (146)
T ss_dssp TEEEEEEE---
T ss_pred CEEEEEEeCCc
Confidence 99999987554
No 117
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=94.94 E-value=0.026 Score=57.12 Aligned_cols=67 Identities=12% Similarity=0.165 Sum_probs=51.8
Q ss_pred CCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEeccCCCceEEEEECCHHHHHHHHHhCCCeEE
Q 007955 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFV 437 (583)
Q Consensus 370 ~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~mng~~L 437 (583)
...-.||||.|| ..++||++|+.+|+.|--...++|-.-..-..|||.|++.+.|..|+..+.|..|
T Consensus 207 ~~acstlfianl-~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 207 ARACSTLFIANL-GPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred chhhhhHhhhcc-CCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhccee
Confidence 355679999999 9999999999999999877766664322334788888888888888777655444
No 118
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=94.62 E-value=0.016 Score=59.43 Aligned_cols=59 Identities=17% Similarity=0.178 Sum_probs=50.9
Q ss_pred HHHHHHHh-hcCCceeEEEecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEec
Q 007955 389 EDVSNYFS-IYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (583)
Q Consensus 389 edLre~Fs-qFG~V~~VrI~~D---ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~A 447 (583)
+||...|+ +||+|+++.|-.+ .-+|=.+|.|..+++|++|++.+|+.++.|++|.....
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 45555566 9999999977654 67899999999999999999999999999999998764
No 119
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=94.42 E-value=0.049 Score=58.13 Aligned_cols=75 Identities=12% Similarity=0.068 Sum_probs=61.6
Q ss_pred CcEEEEeCCCCCCCCHHHHHHHHhhcCC--ceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 007955 373 SRQIYLTFPADSTFREEDVSNYFSIYGP--VQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (583)
Q Consensus 373 ~rtIYVgnL~~~~~tEedLre~FsqFG~--V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~ 446 (583)
.-.+||||| -|.+|++||.+....-|- +.+++.... ++||||.|...+...+++.++.+..+.|.|..-.|-.
T Consensus 80 k~~~YvGNL-~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~ 158 (498)
T KOG4849|consen 80 KYCCYVGNL-LWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLS 158 (498)
T ss_pred eEEEEecce-eEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeec
Confidence 346999999 999999999998877663 344443332 7999999999999999999999999999998877766
Q ss_pred cc
Q 007955 447 YK 448 (583)
Q Consensus 447 Ak 448 (583)
+.
T Consensus 159 ~N 160 (498)
T KOG4849|consen 159 YN 160 (498)
T ss_pred cc
Confidence 54
No 120
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=94.08 E-value=0.022 Score=59.96 Aligned_cols=28 Identities=43% Similarity=0.921 Sum_probs=25.0
Q ss_pred CCCcceeecccc-cccCCCCCCccCCCCC
Q 007955 228 GLGWRPCLYFAR-GYCKNGSSCRFVHGGE 255 (583)
Q Consensus 228 ~~~~kpC~YFak-G~Ck~G~sCry~Hg~~ 255 (583)
..+-|+|.+|.+ |+||.|..|+|.|+..
T Consensus 174 ~~kt~lC~~f~~tG~C~yG~rC~F~H~~~ 202 (332)
T KOG1677|consen 174 KYKTKLCPKFQKTGLCKYGSRCRFIHGEP 202 (332)
T ss_pred CCCCcCCCccccCCCCCCCCcCeecCCCc
Confidence 456699999999 9999999999999855
No 121
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=92.52 E-value=0.67 Score=38.28 Aligned_cols=55 Identities=18% Similarity=0.130 Sum_probs=44.8
Q ss_pred CcEEEEeCCCCCCCCHHHHHHHHhhc---CCceeEEEeccCCCceEEEEECCHHHHHHHHHhC
Q 007955 373 SRQIYLTFPADSTFREEDVSNYFSIY---GPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKG 432 (583)
Q Consensus 373 ~rtIYVgnL~~~~~tEedLre~FsqF---G~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~m 432 (583)
..+|+|.|+ .+++.+||+.||..| .....|..+-|. -+=|.|.+.+.|.+|+.+|
T Consensus 5 peavhirGv--d~lsT~dI~~y~~~y~~~~~~~~IEWIdDt---ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGV--DELSTDDIKAYFSEYFDEEGPFRIEWIDDT---SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcC--CCCCHHHHHHHHHHhcccCCCceEEEecCC---cEEEEECCHHHHHHHHHcC
Confidence 458999999 589999999999999 235577777764 3557899999999999864
No 122
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=92.50 E-value=0.26 Score=53.85 Aligned_cols=77 Identities=21% Similarity=0.210 Sum_probs=67.7
Q ss_pred CCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCe-EEEEEecc
Q 007955 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDA-RVLVKPYK 448 (583)
Q Consensus 371 ~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~mng~~L~GR-~V~Vk~Ak 448 (583)
+.+.+|...++ +.+++|++|++.|..-|-+.+...-..+.|-+|.+.+.+.|+|-.|+-.|+.|.+.+. -++|.+.+
T Consensus 412 PpsatlHlsni-p~svsee~lk~~f~~~g~~vkafkff~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSk 489 (492)
T KOG1190|consen 412 PPSATLHLSNI-PPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSK 489 (492)
T ss_pred CchhheeeccC-CcccchhHHHHhhhcCCceEEeeeecCCCcceeecccCChhHhhhhccccccccCCCCceEEEEeec
Confidence 55668999999 9999999999999999998888776667788999999999999999999999999755 78888765
No 123
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=92.43 E-value=0.3 Score=51.35 Aligned_cols=62 Identities=21% Similarity=0.158 Sum_probs=51.5
Q ss_pred HHHHHHHHhhcCCceeEEEecc-----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEeccc
Q 007955 388 EEDVSNYFSIYGPVQDVRIPYQ-----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (583)
Q Consensus 388 EedLre~FsqFG~V~~VrI~~D-----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~Ak~ 449 (583)
|+++++.-++||+|..|-|-.+ .-.---||.|...+.|-+|+-.|||.++.||.|...++.-
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~ 366 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNL 366 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccH
Confidence 5677888999999999987553 1122379999999999999999999999999999888753
No 124
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=91.57 E-value=0.62 Score=53.84 Aligned_cols=73 Identities=16% Similarity=0.130 Sum_probs=62.7
Q ss_pred CcEEEEeCCCCCCCCHHHHHHHHhhcCCce-eEEEecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 007955 373 SRQIYLTFPADSTFREEDVSNYFSIYGPVQ-DVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (583)
Q Consensus 373 ~rtIYVgnL~~~~~tEedLre~FsqFG~V~-~VrI~~D---ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~ 446 (583)
.+-|-+.|. +++++-+||-+||+.|-.+- +|+|-+. ..-|=+-|.|++.++|.+|...++++.|..|.|++..
T Consensus 867 p~V~~~~n~-Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 867 PRVLSCNNF-PFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CeEEEecCC-CccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 357888999 99999999999999997665 4555443 5678899999999999999999999999999998863
No 125
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=91.40 E-value=0.62 Score=46.38 Aligned_cols=75 Identities=11% Similarity=0.071 Sum_probs=61.8
Q ss_pred CCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEeccCCCceEEEEECCHHHHHHHHHhCCCeEE--cCeEEEEEecc
Q 007955 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFV--CDARVLVKPYK 448 (583)
Q Consensus 371 ~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~mng~~L--~GR~V~Vk~Ak 448 (583)
.+...|.|.+| +.+-+++||+++.-+-|.|.-..|.+ -|+|.|.|...|+.+-|+.+++...+ .|-..++....
T Consensus 113 rSe~RVvVsGL-p~SgSWQDLKDHmReaGdvCfadv~r---Dg~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~yirv~~ 188 (241)
T KOG0105|consen 113 RSEYRVVVSGL-PPSGSWQDLKDHMREAGDVCFADVQR---DGVGVVEYLRKEDMKYAVRKLDDQKFRSEGETAYIRVRG 188 (241)
T ss_pred ccceeEEEecC-CCCCchHHHHHHHHhhCCeeeeeeec---ccceeeeeeehhhHHHHHHhhccccccCcCcEeeEEecc
Confidence 34568999999 88999999999999999999888876 47999999999999999999876554 46555555443
Q ss_pred c
Q 007955 449 E 449 (583)
Q Consensus 449 ~ 449 (583)
.
T Consensus 189 ~ 189 (241)
T KOG0105|consen 189 D 189 (241)
T ss_pred c
Confidence 3
No 126
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=90.62 E-value=0.42 Score=51.96 Aligned_cols=77 Identities=16% Similarity=0.276 Sum_probs=60.7
Q ss_pred cEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEec---c----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 007955 374 RQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPY---Q----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (583)
Q Consensus 374 rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~---D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~ 446 (583)
.-|-|.|| ...+|.+.++.+|+-.|+|.+++|.- | -..-.+||.|.+...|..|-...|. .+-++.+.|.+
T Consensus 8 ~vIqvani-spsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtnt-vfvdraliv~p 85 (479)
T KOG4676|consen 8 GVIQVANI-SPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNT-VFVDRALIVRP 85 (479)
T ss_pred ceeeeccc-CchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccc-eeeeeeEEEEe
Confidence 38999999 88999999999999999999999854 2 2345899999999999888766454 45566677777
Q ss_pred cccCCC
Q 007955 447 YKEKGK 452 (583)
Q Consensus 447 Ak~K~k 452 (583)
+.....
T Consensus 86 ~~~~~~ 91 (479)
T KOG4676|consen 86 YGDEVI 91 (479)
T ss_pred cCCCCC
Confidence 655443
No 127
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=90.16 E-value=0.19 Score=51.96 Aligned_cols=74 Identities=14% Similarity=0.180 Sum_probs=61.7
Q ss_pred cEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc---CCCceEEEEECCHHHHHHHHHhCC----CeEEcCeEEEEEe
Q 007955 374 RQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGN----PHFVCDARVLVKP 446 (583)
Q Consensus 374 rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D---ksRGfAFVtF~~~e~A~~Al~~mn----g~~L~GR~V~Vk~ 446 (583)
..|||.|| ...++.+.+..-|+.||+|....+..| +.-+=++|.|...-.|.+|+...+ +....++.+.|.+
T Consensus 32 a~l~V~nl-~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 32 AELYVVNL-MQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred ceEEEEec-chhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCCh
Confidence 78999999 889999999999999999998766555 667789999999999999998873 3455777777766
Q ss_pred cc
Q 007955 447 YK 448 (583)
Q Consensus 447 Ak 448 (583)
..
T Consensus 111 ~e 112 (275)
T KOG0115|consen 111 ME 112 (275)
T ss_pred hh
Confidence 54
No 128
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=89.90 E-value=0.1 Score=55.44 Aligned_cols=81 Identities=11% Similarity=0.065 Sum_probs=62.1
Q ss_pred CCcEEEEeCCCCCCCCHHHHH--HHHhhcCCceeEEEeccC----C-C--ceEEEEECCHHHHHHHHHhCCCeEEcCeEE
Q 007955 372 ASRQIYLTFPADSTFREEDVS--NYFSIYGPVQDVRIPYQQ----K-R--MFGFVTFVYPETVKIILAKGNPHFVCDARV 442 (583)
Q Consensus 372 ~~rtIYVgnL~~~~~tEedLr--e~FsqFG~V~~VrI~~Dk----s-R--GfAFVtF~~~e~A~~Al~~mng~~L~GR~V 442 (583)
....+||-+|......|..|+ ++|++||.|.+|.+-.+. + - .=++|||...++|..||...++..++|+.+
T Consensus 76 qknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~l 155 (327)
T KOG2068|consen 76 QKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRAL 155 (327)
T ss_pred hhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhh
Confidence 456789999933444555565 699999999999987652 1 1 127999999999999999999999999997
Q ss_pred EEEecccCCC
Q 007955 443 LVKPYKEKGK 452 (583)
Q Consensus 443 ~Vk~Ak~K~k 452 (583)
+......+-.
T Consensus 156 ka~~gttkyc 165 (327)
T KOG2068|consen 156 KASLGTTKYC 165 (327)
T ss_pred HHhhCCCcch
Confidence 7766665543
No 129
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=89.55 E-value=0.16 Score=59.48 Aligned_cols=76 Identities=12% Similarity=0.006 Sum_probs=66.8
Q ss_pred CCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEecc
Q 007955 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (583)
Q Consensus 372 ~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D---ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~Ak 448 (583)
.+.+++|.|+ ++.-|.+.++.+++.+|.+.+++++.. +.+|.|||.|.++.++.+++..++...+.-+.+.|....
T Consensus 735 gK~~v~i~g~-pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsn 813 (881)
T KOG0128|consen 735 GKISVAISGP-PFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSN 813 (881)
T ss_pred hhhhhheeCC-CCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccC
Confidence 4678999999 999999999999999999999998764 789999999999999999999988777777766666543
No 130
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=89.54 E-value=0.049 Score=63.58 Aligned_cols=66 Identities=26% Similarity=0.338 Sum_probs=56.6
Q ss_pred CCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEe----ccCCCceEEEEECCHHHHHHHHHhCCCeEEc
Q 007955 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIP----YQQKRMFGFVTFVYPETVKIILAKGNPHFVC 438 (583)
Q Consensus 372 ~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~----~DksRGfAFVtF~~~e~A~~Al~~mng~~L~ 438 (583)
..-++||.+| +..+.+.||...|+.+|.|..|+|. .++-||+|+|.|..++.+.+||.....+.+.
T Consensus 666 ~~~~~fvsnl-~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 666 DLIKIFVSNL-SPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred HHHHHHHhhc-chhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 3458999999 9999999999999999999988876 2378999999999999999999985555444
No 131
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.47 E-value=0.13 Score=55.41 Aligned_cols=23 Identities=39% Similarity=0.912 Sum_probs=21.7
Q ss_pred ceeecccccccCCCCCCccCCCC
Q 007955 232 RPCLYFARGYCKNGSSCRFVHGG 254 (583)
Q Consensus 232 kpC~YFakG~Ck~G~sCry~Hg~ 254 (583)
.||+||.+|+|+.|.-|||.|..
T Consensus 9 tic~~~~~g~c~~g~~cr~~h~~ 31 (344)
T KOG1039|consen 9 TICKYYQKGNCKFGDLCRLSHSL 31 (344)
T ss_pred hhhhhcccccccccceeeeeccC
Confidence 79999999999999999999954
No 132
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=88.72 E-value=0.87 Score=48.20 Aligned_cols=62 Identities=23% Similarity=0.243 Sum_probs=50.5
Q ss_pred CHHHHHHHHhhcCCceeEEEeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeE-EEEEecccCC
Q 007955 387 REEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDAR-VLVKPYKEKG 451 (583)
Q Consensus 387 tEedLre~FsqFG~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~-V~Vk~Ak~K~ 451 (583)
.-.-|-.+|++||+|+++.... .-.|=.|.|...-+|++||.+ |+.+|+|.. |-|+.+.+|.
T Consensus 209 ~~s~vL~~F~~cG~Vvkhv~~~--ngNwMhirYssr~~A~KALsk-ng~ii~g~vmiGVkpCtDks 271 (350)
T KOG4285|consen 209 QVSIVLNLFSRCGEVVKHVTPS--NGNWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKPCTDKS 271 (350)
T ss_pred chhHHHHHHHhhCeeeeeecCC--CCceEEEEecchhHHHHhhhh-cCeeeccceEEeeeecCCHH
Confidence 3456778999999999987663 677999999999999999999 999998764 4566665543
No 133
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=87.66 E-value=0.13 Score=60.53 Aligned_cols=79 Identities=16% Similarity=0.235 Sum_probs=64.7
Q ss_pred CCCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEE
Q 007955 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (583)
Q Consensus 369 ~~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D---ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk 445 (583)
....++|||+|++ +..+++.+|+..|..+|.|.+|.|-.= +---||||.|.+.+.+-.|+..+.+..|..-.+++.
T Consensus 368 D~~atrTLf~Gnl-~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~g 446 (975)
T KOG0112|consen 368 DFRATRTLFLGNL-DSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIG 446 (975)
T ss_pred chhhhhhhhhcCc-ccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCccccc
Confidence 3467899999999 999999999999999999999998442 334599999999999999998887777765555555
Q ss_pred ecc
Q 007955 446 PYK 448 (583)
Q Consensus 446 ~Ak 448 (583)
...
T Consensus 447 lG~ 449 (975)
T KOG0112|consen 447 LGQ 449 (975)
T ss_pred ccc
Confidence 544
No 134
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=87.48 E-value=1.8 Score=47.07 Aligned_cols=66 Identities=15% Similarity=-0.004 Sum_probs=57.2
Q ss_pred CCCCCHHHHHHHHhhcCCceeEEEeccCCCc-eEEEEECCHHHHHHHHHhCCCeEEc--CeEEEEEecccC
Q 007955 383 DSTFREEDVSNYFSIYGPVQDVRIPYQQKRM-FGFVTFVYPETVKIILAKGNPHFVC--DARVLVKPYKEK 450 (583)
Q Consensus 383 ~~~~tEedLre~FsqFG~V~~VrI~~DksRG-fAFVtF~~~e~A~~Al~~mng~~L~--GR~V~Vk~Ak~K 450 (583)
-+.+|-+-|..+-...|+|..|.|.+ +.| -|.|+|++.+.|++|.+.|||..|. -..++|.+|++.
T Consensus 131 ~YpItvDVly~Icnp~GkVlRIvIfk--kngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~ 199 (494)
T KOG1456|consen 131 QYPITVDVLYTICNPQGKVLRIVIFK--KNGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPT 199 (494)
T ss_pred ccccchhhhhhhcCCCCceEEEEEEe--ccceeeEEeechhHHHHHHHhhcccccccccceeEEEEecCcc
Confidence 57899999999999999999999987 344 4899999999999999999998885 357888888764
No 135
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=87.25 E-value=0.84 Score=49.66 Aligned_cols=68 Identities=16% Similarity=0.135 Sum_probs=51.3
Q ss_pred EEEEeCCCCCCCCHHHHHHHHhhc----CCceeEEEec--c-CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEE
Q 007955 375 QIYLTFPADSTFREEDVSNYFSIY----GPVQDVRIPY--Q-QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (583)
Q Consensus 375 tIYVgnL~~~~~tEedLre~FsqF----G~V~~VrI~~--D-ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~V 444 (583)
-|-..+| +++.++.|+.+||..- |-++.|-.++ | +.-|=|||.|..+++|++|+.+ +...|.-|-|.+
T Consensus 163 ivRmRGL-Pfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIEl 237 (508)
T KOG1365|consen 163 IVRMRGL-PFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIEL 237 (508)
T ss_pred EEEecCC-CCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHH
Confidence 3455789 9999999999999732 2344444433 3 7789999999999999999998 766666554544
No 136
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=87.19 E-value=2 Score=42.62 Aligned_cols=63 Identities=16% Similarity=0.016 Sum_probs=48.1
Q ss_pred CHHHHHHHHhhcCCceeEEEeccCCCceEEEEECCHHHHHHHHHhCC--CeEEcCeEEEEEecccCC
Q 007955 387 REEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGN--PHFVCDARVLVKPYKEKG 451 (583)
Q Consensus 387 tEedLre~FsqFG~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~mn--g~~L~GR~V~Vk~Ak~K~ 451 (583)
..+.|+++|..|+.+....+.+ +-+=..|.|.+.++|.+|...++ +..+.|..++|.+++.-.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~--sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLK--SFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEET--TTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred hHHHHHHHHHhcCCceEEEEcC--CCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 3578999999999999998877 66678999999999999999998 899999999999885433
No 137
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=86.79 E-value=2.9 Score=40.18 Aligned_cols=73 Identities=16% Similarity=0.195 Sum_probs=55.8
Q ss_pred CCCCcEEEEeCCCCCCC-CHHHHHH---HHhhcCCceeEEEeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEE
Q 007955 370 NPASRQIYLTFPADSTF-REEDVSN---YFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (583)
Q Consensus 370 ~~~~rtIYVgnL~~~~~-tEedLre---~FsqFG~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk 445 (583)
++.-.||.|.-| ..++ ..+|++. ..+.||+|.+|.+. .|.-|.|+|.+..+|=+|+.+... ..-|..+.+.
T Consensus 83 epPMsTIVVRWl-kknm~~~edl~sV~~~Ls~fGpI~SVT~c---GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCs 157 (166)
T PF15023_consen 83 EPPMSTIVVRWL-KKNMQPTEDLKSVIQRLSVFGPIQSVTLC---GRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCS 157 (166)
T ss_pred CCCceeEEeehh-hhcCChHHHHHHHHHHHHhcCCcceeeec---CCceEEEEehhhHHHHHHHHhhcC-CCCCceEEee
Confidence 355679999888 5444 3455554 56789999999986 577899999999999999999654 4567777776
Q ss_pred ec
Q 007955 446 PY 447 (583)
Q Consensus 446 ~A 447 (583)
|-
T Consensus 158 Wq 159 (166)
T PF15023_consen 158 WQ 159 (166)
T ss_pred cc
Confidence 64
No 138
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=86.53 E-value=0.57 Score=51.42 Aligned_cols=77 Identities=12% Similarity=0.037 Sum_probs=59.8
Q ss_pred cEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEeccCCCceEEEEECCHHHHHHHHHhCCCe-EEcCeEEEEEecccCCC
Q 007955 374 RQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPH-FVCDARVLVKPYKEKGK 452 (583)
Q Consensus 374 rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~mng~-~L~GR~V~Vk~Ak~K~k 452 (583)
.++|+||| ....+..||+.+|..----..=.++. .-||+||...+..-|.+|++.++++ .+.|+++.|....++..
T Consensus 2 nklyignL-~p~~~psdl~svfg~ak~~~~g~fl~--k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkq 78 (584)
T KOG2193|consen 2 NKLYIGNL-SPQVTPSDLESVFGDAKIPGSGQFLV--KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQ 78 (584)
T ss_pred Cccccccc-CCCCChHHHHHHhccccCCCCcceee--ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHH
Confidence 47999999 99999999999998651111111122 5799999999999999999998754 67899999988776654
Q ss_pred C
Q 007955 453 V 453 (583)
Q Consensus 453 ~ 453 (583)
+
T Consensus 79 r 79 (584)
T KOG2193|consen 79 R 79 (584)
T ss_pred H
Confidence 3
No 139
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=86.26 E-value=0.86 Score=49.60 Aligned_cols=76 Identities=12% Similarity=0.110 Sum_probs=64.1
Q ss_pred CCcEEEEeCCCCCCCCHHHHHHHHhhcCCcee---EEEecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEE
Q 007955 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQD---VRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (583)
Q Consensus 372 ~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~---VrI~~D---ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk 445 (583)
.+..|-+.+| ++..+-+||-+||..|-.-++ |.|+.+ +.-|=|||.|.+.|.|..|..+.+++...+|-|.|-
T Consensus 279 ~kdcvRLRGL-Py~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvf 357 (508)
T KOG1365|consen 279 SKDCVRLRGL-PYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVF 357 (508)
T ss_pred CCCeeEecCC-ChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEe
Confidence 3567889999 999999999999999975433 566554 677999999999999999999988888889999998
Q ss_pred ecc
Q 007955 446 PYK 448 (583)
Q Consensus 446 ~Ak 448 (583)
.+.
T Consensus 358 p~S 360 (508)
T KOG1365|consen 358 PCS 360 (508)
T ss_pred ecc
Confidence 764
No 140
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=86.22 E-value=0.8 Score=54.25 Aligned_cols=82 Identities=10% Similarity=0.145 Sum_probs=69.3
Q ss_pred CCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEeccCCCceEEEEECCHHHHHHHHHhCCCeEEc--CeEEEEEecc
Q 007955 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVC--DARVLVKPYK 448 (583)
Q Consensus 371 ~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~mng~~L~--GR~V~Vk~Ak 448 (583)
.-.+.++||+| .....-..|...|..||.|..|.+-. ..-||+|.|++...++.|+..|-+-.|. .+++.|.++.
T Consensus 453 t~ttr~~sggl-g~w~p~~~l~r~fd~fGpir~Idy~h--gq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~ 529 (975)
T KOG0112|consen 453 TPTTRLQSGGL-GPWSPVSRLNREFDRFGPIRIIDYRH--GQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLAS 529 (975)
T ss_pred ccceeeccCCC-CCCChHHHHHHHhhccCcceeeeccc--CCcceeeecccCccchhhHHHHhcCcCCCCCccccccccc
Confidence 44678999999 77778889999999999999987654 6679999999999999999999888776 4779999998
Q ss_pred cCCCCch
Q 007955 449 EKGKVPD 455 (583)
Q Consensus 449 ~K~k~~~ 455 (583)
+-...+.
T Consensus 530 ~~~~~Pq 536 (975)
T KOG0112|consen 530 PPGATPQ 536 (975)
T ss_pred CCCCChh
Confidence 7666543
No 141
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=85.44 E-value=0.86 Score=47.76 Aligned_cols=36 Identities=22% Similarity=0.355 Sum_probs=28.5
Q ss_pred CCcEEEEeCCCCCC------------CCHHHHHHHHhhcCCceeEEEec
Q 007955 372 ASRQIYLTFPADST------------FREEDVSNYFSIYGPVQDVRIPY 408 (583)
Q Consensus 372 ~~rtIYVgnL~~~~------------~tEedLre~FsqFG~V~~VrI~~ 408 (583)
...|||+.+| +-. -+|+.|+..|..||+|..|.|+.
T Consensus 148 rpdti~la~i-p~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 148 RPDTIHLAGI-PCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred CCCceeecCC-cceeeeecccccccCChHHHHHHHHHHhccceecCCcc
Confidence 3568999888 421 35788999999999999999864
No 142
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=85.41 E-value=0.97 Score=51.51 Aligned_cols=82 Identities=7% Similarity=0.031 Sum_probs=66.5
Q ss_pred CCCCCCCCCCcEEEEeCCCCCCCCHHHHHHHHh-hcCCceeEEEeccCCCceEEEEECCHHHHHHHHHhCCCeEE---cC
Q 007955 364 GSAGIVNPASRQIYLTFPADSTFREEDVSNYFS-IYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFV---CD 439 (583)
Q Consensus 364 g~~g~~~~~~rtIYVgnL~~~~~tEedLre~Fs-qFG~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~mng~~L---~G 439 (583)
.++.+..+.+.-|||.|| -.-+|...|+++.. ..|.|++..| |+-|--+||+|.+.++|.+...+|++... ++
T Consensus 435 vpSPsR~~~SnvlhI~nL-vRPFTlgQLkelL~rtgg~Vee~Wm--DkIKShCyV~yss~eEA~atr~AlhnV~WP~sNP 511 (718)
T KOG2416|consen 435 VPSPSRKEPSNVLHIDNL-VRPFTLGQLKELLGRTGGNVEEFWM--DKIKSHCYVSYSSVEEAAATREALHNVQWPPSNP 511 (718)
T ss_pred CCCCCCCCccceEeeecc-cccchHHHHHHHHhhccCchHHHHH--HHhhcceeEecccHHHHHHHHHHHhccccCCCCC
Confidence 344556677889999999 88999999999999 5777887743 44666799999999999999999988765 57
Q ss_pred eEEEEEecc
Q 007955 440 ARVLVKPYK 448 (583)
Q Consensus 440 R~V~Vk~Ak 448 (583)
+.|.+.+..
T Consensus 512 K~L~adf~~ 520 (718)
T KOG2416|consen 512 KHLIADFVR 520 (718)
T ss_pred ceeEeeecc
Confidence 777777764
No 143
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Probab=78.50 E-value=1.2 Score=47.05 Aligned_cols=24 Identities=38% Similarity=0.898 Sum_probs=21.0
Q ss_pred ceeecc-cccccCCCCCCccCCCCC
Q 007955 232 RPCLYF-ARGYCKNGSSCRFVHGGE 255 (583)
Q Consensus 232 kpC~YF-akG~Ck~G~sCry~Hg~~ 255 (583)
-+|.|| .+|.|.+|..|.|.|.++
T Consensus 135 ~~c~~Fs~~G~cs~g~~c~~~h~dp 159 (285)
T COG5084 135 PPCRSFSLKGSCSSGPSCGYSHIDP 159 (285)
T ss_pred CCcccccccceeccCCCCCccccCc
Confidence 489999 899999999999999754
No 144
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]
Probab=77.80 E-value=0.72 Score=49.18 Aligned_cols=22 Identities=36% Similarity=0.902 Sum_probs=20.9
Q ss_pred cceeecccccccCCCCC-CccCC
Q 007955 231 WRPCLYFARGYCKNGSS-CRFVH 252 (583)
Q Consensus 231 ~kpC~YFakG~Ck~G~s-Cry~H 252 (583)
.-+|.=|.||.|+||.. |||.|
T Consensus 37 ~eVCReF~rn~C~R~d~~CkfaH 59 (331)
T KOG2494|consen 37 LEVCREFLRNTCSRGDRECKFAH 59 (331)
T ss_pred HHHHHHHHhccccCCCccccccC
Confidence 36999999999999999 99999
No 145
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]
Probab=74.94 E-value=1.8 Score=46.41 Aligned_cols=27 Identities=37% Similarity=0.779 Sum_probs=23.6
Q ss_pred CCCcceeecccccccCCCCCCccCCCC
Q 007955 228 GLGWRPCLYFARGYCKNGSSCRFVHGG 254 (583)
Q Consensus 228 ~~~~kpC~YFakG~Ck~G~sCry~Hg~ 254 (583)
..+-..|.||-+|.|+.|..|-|+|..
T Consensus 74 ~~~~~vcK~~l~glC~kgD~C~Flhe~ 100 (325)
T KOG1040|consen 74 SRGKVVCKHWLRGLCKKGDQCEFLHEY 100 (325)
T ss_pred cCCceeehhhhhhhhhccCcCcchhhh
Confidence 456789999999999999999999963
No 146
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=72.88 E-value=10 Score=33.37 Aligned_cols=55 Identities=22% Similarity=0.400 Sum_probs=41.1
Q ss_pred CcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEeccCCCceEEEEECCHHHHHHHHHhCC
Q 007955 373 SRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGN 433 (583)
Q Consensus 373 ~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~mn 433 (583)
..-.||+++ ..+...||.++|+.||.|.---| - -.-|||...+++.|..|+..+.
T Consensus 9 dHVFhltFP--keWK~~DI~qlFspfG~I~VsWi-~---dTSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 9 DHVFHLTFP--KEWKTSDIYQLFSPFGQIYVSWI-N---DTSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CCEEEEE----TT--HHHHHHHCCCCCCEEEEEE-C---TTEEEEEECCCHHHHHHHHHHT
T ss_pred ceEEEEeCc--hHhhhhhHHHHhccCCcEEEEEE-c---CCcEEEEeecHHHHHHHHHHhc
Confidence 345677755 78999999999999999864443 3 3579999999999999888764
No 147
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=71.50 E-value=2.3 Score=44.83 Aligned_cols=80 Identities=14% Similarity=0.055 Sum_probs=65.0
Q ss_pred CCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 007955 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (583)
Q Consensus 371 ~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~ 446 (583)
....++|||.+ .+.+.+.+...+|.++|.+..+.+... .++|++.|.|...+.+..|+...-.+.+.++.+....
T Consensus 86 ~~~~~~f~g~~-s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl 164 (285)
T KOG4210|consen 86 GSSSTFFVGEL-SENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDL 164 (285)
T ss_pred ccccccccccc-ccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcc
Confidence 35789999999 888888889999999999988877552 7999999999999999999998554566677666555
Q ss_pred cccCC
Q 007955 447 YKEKG 451 (583)
Q Consensus 447 Ak~K~ 451 (583)
...+.
T Consensus 165 ~~~~~ 169 (285)
T KOG4210|consen 165 NTRRG 169 (285)
T ss_pred ccccc
Confidence 44433
No 148
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=69.70 E-value=2.2 Score=48.21 Aligned_cols=25 Identities=40% Similarity=0.979 Sum_probs=22.6
Q ss_pred CcceeecccccccCCCCCCccCCCC
Q 007955 230 GWRPCLYFARGYCKNGSSCRFVHGG 254 (583)
Q Consensus 230 ~~kpC~YFakG~Ck~G~sCry~Hg~ 254 (583)
..-||-=|-||-|++|.+|.|.||-
T Consensus 235 s~tpCPefrkG~C~rGD~CEyaHgv 259 (528)
T KOG1595|consen 235 SSTPCPEFRKGSCERGDSCEYAHGV 259 (528)
T ss_pred cCccCcccccCCCCCCCccccccce
Confidence 4569999999999999999999983
No 149
>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]
Probab=69.43 E-value=1.7 Score=45.91 Aligned_cols=22 Identities=36% Similarity=1.028 Sum_probs=20.6
Q ss_pred eeecccccccCCCCCCccCCCC
Q 007955 233 PCLYFARGYCKNGSSCRFVHGG 254 (583)
Q Consensus 233 pC~YFakG~Ck~G~sCry~Hg~ 254 (583)
.|-||..|.|..|..|+|+|+-
T Consensus 94 vCafFk~g~C~KG~kCKFsHdl 115 (343)
T KOG1763|consen 94 VCAFFKQGTCTKGDKCKFSHDL 115 (343)
T ss_pred HHHHHhccCCCCCCcccccchH
Confidence 7999999999999999999963
No 150
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]
Probab=68.97 E-value=2.2 Score=43.47 Aligned_cols=22 Identities=50% Similarity=1.173 Sum_probs=19.8
Q ss_pred ceeecc-cccccCCCCCCccCCC
Q 007955 232 RPCLYF-ARGYCKNGSSCRFVHG 253 (583)
Q Consensus 232 kpC~YF-akG~Ck~G~sCry~Hg 253 (583)
--|.|| +.|.|-.|..|||+|.
T Consensus 207 vycryynangicgkgaacrfvhe 229 (377)
T KOG1492|consen 207 VYCRYYNANGICGKGAACRFVHE 229 (377)
T ss_pred eEEEEecCCCcccCCceeeeecc
Confidence 469988 6999999999999995
No 151
>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger.
Probab=68.34 E-value=2.8 Score=28.27 Aligned_cols=19 Identities=37% Similarity=0.941 Sum_probs=16.4
Q ss_pred eeeccccc-ccCCCCCCccCC
Q 007955 233 PCLYFARG-YCKNGSSCRFVH 252 (583)
Q Consensus 233 pC~YFakG-~Ck~G~sCry~H 252 (583)
.|.|..+| .|.. .+|.|.|
T Consensus 2 lC~yEl~Gg~Cnd-~~C~~QH 21 (23)
T PF10650_consen 2 LCPYELTGGVCND-PDCEFQH 21 (23)
T ss_pred CCccccCCCeeCC-CCCCccc
Confidence 59999999 8855 7999999
No 152
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]
Probab=66.73 E-value=2.2 Score=45.91 Aligned_cols=28 Identities=25% Similarity=0.796 Sum_probs=24.6
Q ss_pred CCCcceeecccccccCCCCCCccCCCCC
Q 007955 228 GLGWRPCLYFARGYCKNGSSCRFVHGGE 255 (583)
Q Consensus 228 ~~~~kpC~YFakG~Ck~G~sCry~Hg~~ 255 (583)
.-..|.|.+|.+|||.+|.+|++.|...
T Consensus 131 qt~~k~c~~~~~g~c~~g~~c~~~h~~~ 158 (325)
T KOG1040|consen 131 QTAIKKCKWYKEGFCRGGPSCKKRHERK 158 (325)
T ss_pred hhhhhccchhhhccCCCcchhhhhhhcc
Confidence 3467999999999999999999999743
No 153
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=66.67 E-value=35 Score=31.21 Aligned_cols=65 Identities=14% Similarity=0.120 Sum_probs=49.6
Q ss_pred CcEEEEeCCCCCCCCHHHHHHHHhhcC-CceeEEEecc--CCCceEEEEECCHHHHHHHHHhCCCeEEc
Q 007955 373 SRQIYLTFPADSTFREEDVSNYFSIYG-PVQDVRIPYQ--QKRMFGFVTFVYPETVKIILAKGNPHFVC 438 (583)
Q Consensus 373 ~rtIYVgnL~~~~~tEedLre~FsqFG-~V~~VrI~~D--ksRGfAFVtF~~~e~A~~Al~~mng~~L~ 438 (583)
...+-+..+ ++-++-++|..+.+.+- .|..++|++| ..|=-+.++|.+.+.|+.=....||+.++
T Consensus 13 ~~~~~l~vp-~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 13 STLCCLAVP-PYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred ceEEEEEeC-cccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 334444455 77777788877777664 5668899998 46667889999999999999999988764
No 154
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=66.28 E-value=20 Score=29.86 Aligned_cols=59 Identities=17% Similarity=0.155 Sum_probs=36.3
Q ss_pred CCCCHHHHHHHHhhcCCce-----eEEEeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEec
Q 007955 384 STFREEDVSNYFSIYGPVQ-----DVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (583)
Q Consensus 384 ~~~tEedLre~FsqFG~V~-----~VrI~~DksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~A 447 (583)
..++..+|-.++..-+.|. +|+|. ..|.||.-.. +.|+.+++.|++..+.|++|.|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~----~~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIF----DNFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-----SS-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEe----eeEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 4688889999998876665 45553 3599998655 5789999999999999999999875
No 155
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=61.60 E-value=5.2 Score=46.33 Aligned_cols=72 Identities=13% Similarity=0.047 Sum_probs=63.3
Q ss_pred CCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEec
Q 007955 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (583)
Q Consensus 370 ~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~A 447 (583)
.+..-++|||++ ...+..+-++.+...+|-|..+.... |||..|.......+|+..+....++|..+.++.-
T Consensus 37 ~~~~~~vfv~~~-~~~~s~~~~~~il~~~g~v~s~kr~~-----fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d 108 (668)
T KOG2253|consen 37 LPPRDTVFVGNI-SYLVSQEFWKSILAKSGFVPSWKRDK-----FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVD 108 (668)
T ss_pred CCCCceeEecch-hhhhhHHHHHHHHhhCCcchhhhhhh-----hcccchhhHHHHHHHHHHhcccCCCcchhhccch
Confidence 345679999999 88889999999999999999988765 9999999999999999998888888888887663
No 156
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=59.32 E-value=9 Score=37.55 Aligned_cols=67 Identities=13% Similarity=0.132 Sum_probs=44.5
Q ss_pred CCcEEEEeCCCCCCCCHHHHHHHHhh-cCCc---eeEEEecc------CCCceEEEEECCHHHHHHHHHhCCCeEEcC
Q 007955 372 ASRQIYLTFPADSTFREEDVSNYFSI-YGPV---QDVRIPYQ------QKRMFGFVTFVYPETVKIILAKGNPHFVCD 439 (583)
Q Consensus 372 ~~rtIYVgnL~~~~~tEedLre~Fsq-FG~V---~~VrI~~D------ksRGfAFVtF~~~e~A~~Al~~mng~~L~G 439 (583)
...+|.|.+| |..+||+++++..+. ++.. ..+.-..+ ..-.-|+|.|.+.+++..-...++|+.+.+
T Consensus 6 ~~~KvVIR~L-PP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D 82 (176)
T PF03467_consen 6 EGTKVVIRRL-PPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVD 82 (176)
T ss_dssp ---EEEEEEE--TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-
T ss_pred cCceEEEeCC-CCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEEC
Confidence 3569999999 999999999987776 6655 23321111 122448999999999999999999977643
No 157
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=56.78 E-value=2.3 Score=43.48 Aligned_cols=73 Identities=29% Similarity=0.362 Sum_probs=59.2
Q ss_pred CCcEEEEeC----CCCCCCCHHHHHHHHhhcCCceeEEEecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEE
Q 007955 372 ASRQIYLTF----PADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (583)
Q Consensus 372 ~~rtIYVgn----L~~~~~tEedLre~FsqFG~V~~VrI~~D---ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~V 444 (583)
..+|++.|+ | ...++++.+.+.|+.-|+|..+++..+ +.|.++||++.....+-.++....+..+.=+++.+
T Consensus 79 ~q~~~r~G~shapl-d~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~~~~~~~ 157 (267)
T KOG4454|consen 79 EQRTLRCGNSHAPL-DERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQGLELFQKKVTI 157 (267)
T ss_pred hhcccccCCCcchh-hhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhhcccCcCCCCccc
Confidence 356778888 7 789999999999999999999999886 68999999999888888888776555554444444
Q ss_pred E
Q 007955 445 K 445 (583)
Q Consensus 445 k 445 (583)
+
T Consensus 158 g 158 (267)
T KOG4454|consen 158 G 158 (267)
T ss_pred c
Confidence 3
No 158
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=53.22 E-value=20 Score=41.09 Aligned_cols=66 Identities=12% Similarity=-0.022 Sum_probs=49.6
Q ss_pred EEEEeCCCCCCCCHHHHHHHHhh--cCCceeEEEeccCCCceEEEEECCHHHHHHHHHhC--CCeEEcCeEEEE
Q 007955 375 QIYLTFPADSTFREEDVSNYFSI--YGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKG--NPHFVCDARVLV 444 (583)
Q Consensus 375 tIYVgnL~~~~~tEedLre~Fsq--FG~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~m--ng~~L~GR~V~V 444 (583)
-|.+.-| +.++.+|+|+.+|.- +-++.+|..-. . -=-||||++..+|+.|.+.+ .-++|-|+.|..
T Consensus 177 IvilREI-pettp~e~Vk~lf~~encPk~iscefa~--N-~nWyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 177 IVILREI-PETTPIEVVKALFKGENCPKVISCEFAH--N-DNWYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred EEEEeec-CCCChHHHHHHHhccCCCCCceeeeeee--c-CceEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 4556778 889999999999986 77888998765 2 24699999999999998765 234455555543
No 159
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=52.39 E-value=10 Score=45.22 Aligned_cols=76 Identities=18% Similarity=0.125 Sum_probs=63.3
Q ss_pred CCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEeccCCCceEEEEECCHHHHHHHHHhCCCeEE--cCeEEEEEecc
Q 007955 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFV--CDARVLVKPYK 448 (583)
Q Consensus 371 ~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~mng~~L--~GR~V~Vk~Ak 448 (583)
+.-.+.++.+. .-.++...|..+|++||.|.+++..+| -.-|.|.|...+.|-.|++++.|+.+ .|...+|..|+
T Consensus 296 plqp~~~~~nn-~v~~tSssL~~l~s~yg~v~s~wtlr~--~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak 372 (1007)
T KOG4574|consen 296 PLQPKQSLENN-AVNLTSSSLATLCSDYGSVASAWTLRD--LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAK 372 (1007)
T ss_pred cCcchhhhhcc-cccchHHHHHHHHHhhcchhhheeccc--ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecc
Confidence 33456677777 668888999999999999999998773 45799999999999999999988765 58889998887
Q ss_pred c
Q 007955 449 E 449 (583)
Q Consensus 449 ~ 449 (583)
.
T Consensus 373 ~ 373 (1007)
T KOG4574|consen 373 T 373 (1007)
T ss_pred c
Confidence 5
No 160
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=43.97 E-value=60 Score=36.57 Aligned_cols=67 Identities=12% Similarity=0.191 Sum_probs=57.0
Q ss_pred CCCcEEEEeCCCCCCCCHHHHHHHHhhc-CCceeEEEecc--CCCceEEEEECCHHHHHHHHHhCCCeEEc
Q 007955 371 PASRQIYLTFPADSTFREEDVSNYFSIY-GPVQDVRIPYQ--QKRMFGFVTFVYPETVKIILAKGNPHFVC 438 (583)
Q Consensus 371 ~~~rtIYVgnL~~~~~tEedLre~FsqF-G~V~~VrI~~D--ksRGfAFVtF~~~e~A~~Al~~mng~~L~ 438 (583)
...+.|+|-.+ |..+|-.||-.|...| -.|.+++|++| -.|=-..|+|.+.++|..-.+..||..++
T Consensus 72 ~~~~mLcilaV-P~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 72 SSSTMLCILAV-PAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CCCcEEEEEec-cccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 34789999999 8899999999988876 57889999998 35555789999999999999999987764
No 161
>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]
Probab=40.50 E-value=13 Score=39.71 Aligned_cols=28 Identities=36% Similarity=0.991 Sum_probs=23.8
Q ss_pred CCCcceeecccc-cccCCCCCCccCCCCC
Q 007955 228 GLGWRPCLYFAR-GYCKNGSSCRFVHGGE 255 (583)
Q Consensus 228 ~~~~kpC~YFak-G~Ck~G~sCry~Hg~~ 255 (583)
.|--+||.-|.+ |||.-|..|.|-||++
T Consensus 271 ~frTePcinwe~sGyc~yg~Rc~F~hgd~ 299 (351)
T COG5063 271 NFRTEPCINWEKSGYCPYGLRCCFKHGDD 299 (351)
T ss_pred ccccCCccchhhcccCccccccccccCCh
Confidence 445599999965 8999999999999865
No 162
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=39.67 E-value=1.1e+02 Score=32.72 Aligned_cols=56 Identities=18% Similarity=0.161 Sum_probs=43.3
Q ss_pred CCCCCCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEeccCCCceEEEEECCHH
Q 007955 366 AGIVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPE 423 (583)
Q Consensus 366 ~g~~~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~DksRGfAFVtF~~~e 423 (583)
+|.......-|||+|| +.++.-.||+....+-|.+ -.+|...-.+|-+|..|-+..
T Consensus 323 ~g~~a~~~~di~~~nl-~rd~rv~dlk~~lr~~~~~-pm~iswkg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 323 SGVEAGAKTDIKLTNL-SRDIRVKDLKSELRKRECT-PMSISWKGHFGKCFLHFGNRK 378 (396)
T ss_pred CcccCccccceeeccC-ccccchHHHHHHHHhcCCC-ceeEeeecCCcceeEecCCcc
Confidence 4455566778999999 9999999999999888764 234444447889999998763
No 163
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=39.27 E-value=12 Score=37.85 Aligned_cols=22 Identities=45% Similarity=1.111 Sum_probs=18.5
Q ss_pred ceee-cccccccCCCCCCccCCC
Q 007955 232 RPCL-YFARGYCKNGSSCRFVHG 253 (583)
Q Consensus 232 kpC~-YFakG~Ck~G~sCry~Hg 253 (583)
-.|. |-.-|||--|.+|+|+|.
T Consensus 142 dVCKdyk~TGYCGYGDsCKflH~ 164 (259)
T COG5152 142 DVCKDYKETGYCGYGDSCKFLHD 164 (259)
T ss_pred ccccchhhcccccCCchhhhhhh
Confidence 4576 457899999999999995
No 164
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=35.70 E-value=18 Score=38.22 Aligned_cols=28 Identities=43% Similarity=0.775 Sum_probs=23.2
Q ss_pred CCCcceeecc-cccccCC-CCCCccCCCCC
Q 007955 228 GLGWRPCLYF-ARGYCKN-GSSCRFVHGGE 255 (583)
Q Consensus 228 ~~~~kpC~YF-akG~Ck~-G~sCry~Hg~~ 255 (583)
.+.-..|-+| -.|.|+. |.+|+|-|+..
T Consensus 129 ~~kt~lc~~~~~~g~c~y~ge~crfah~~~ 158 (332)
T KOG1677|consen 129 RYKTPLCRSFRKSGTCKYRGEQCRFAHGLE 158 (332)
T ss_pred cccCCcceeeecCccccccCchhhhcCCcc
Confidence 4566789988 5799999 99999999754
No 165
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]
Probab=34.56 E-value=20 Score=38.67 Aligned_cols=23 Identities=22% Similarity=0.681 Sum_probs=19.4
Q ss_pred CcceeecccccccCCCCCCccCCC
Q 007955 230 GWRPCLYFARGYCKNGSSCRFVHG 253 (583)
Q Consensus 230 ~~kpC~YFakG~Ck~G~sCry~Hg 253 (583)
-+--|.=|.||-|.|-+ |||+|.
T Consensus 70 ~v~aC~Ds~kgrCsR~n-CkylHp 92 (331)
T KOG2494|consen 70 RVIACFDSQKGRCSREN-CKYLHP 92 (331)
T ss_pred eEEEEeccccCccCccc-ceecCC
Confidence 45568899999999965 999994
No 166
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Probab=31.19 E-value=26 Score=37.21 Aligned_cols=26 Identities=42% Similarity=0.911 Sum_probs=23.2
Q ss_pred CcceeecccccccCCCCCCccCCCCC
Q 007955 230 GWRPCLYFARGYCKNGSSCRFVHGGE 255 (583)
Q Consensus 230 ~~kpC~YFakG~Ck~G~sCry~Hg~~ 255 (583)
.--+|++|-+|-|+-|..|.|+|+-+
T Consensus 103 s~V~c~~~~~g~c~s~~~c~~lh~~d 128 (285)
T COG5084 103 SSVVCKFFLRGLCKSGFSCEFLHEYD 128 (285)
T ss_pred CCcccchhccccCcCCCccccccCCC
Confidence 34699999999999999999999854
No 167
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.61 E-value=1.4e+02 Score=34.68 Aligned_cols=73 Identities=15% Similarity=0.174 Sum_probs=57.3
Q ss_pred CCCcEEEEeCCCCC-CCCHHHHHHHHhhc----CCceeEEEecc---------------------------C--------
Q 007955 371 PASRQIYLTFPADS-TFREEDVSNYFSIY----GPVQDVRIPYQ---------------------------Q-------- 410 (583)
Q Consensus 371 ~~~rtIYVgnL~~~-~~tEedLre~FsqF----G~V~~VrI~~D---------------------------k-------- 410 (583)
..+++|-|-|+ +| .+..+||--+|+.| |.|.+|.|-.- .
T Consensus 172 ~~T~RLAVvNM-DWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 172 EETKRLAVVNM-DWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred cccceeeEecc-ccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 44788999999 88 57889999999987 69999987430 0
Q ss_pred ----------------CCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEE
Q 007955 411 ----------------KRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (583)
Q Consensus 411 ----------------sRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~V 444 (583)
.-=||.|+|.+.++|..+++.++|..+...-..+
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~ 300 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKL 300 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceecccccee
Confidence 1137999999999999999999999886544433
No 168
>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]
Probab=29.17 E-value=19 Score=37.30 Aligned_cols=23 Identities=35% Similarity=0.905 Sum_probs=21.2
Q ss_pred ceeecccccccCCCCCCccCCCC
Q 007955 232 RPCLYFARGYCKNGSSCRFVHGG 254 (583)
Q Consensus 232 kpC~YFakG~Ck~G~sCry~Hg~ 254 (583)
-.|-.|..|.|..|..|+|.||.
T Consensus 86 ~vcalF~~~~c~kg~~ckF~h~~ 108 (299)
T COG5252 86 VVCALFLNKTCAKGDACKFAHGK 108 (299)
T ss_pred HHHHHhccCccccCchhhhhcch
Confidence 47999999999999999999974
No 169
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=27.94 E-value=3.6e+02 Score=22.56 Aligned_cols=56 Identities=13% Similarity=0.179 Sum_probs=44.3
Q ss_pred CCCCHHHHHHHHhhcCCceeEEEeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEE
Q 007955 384 STFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (583)
Q Consensus 384 ~~~tEedLre~FsqFG~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~V 444 (583)
-.++-+|++.-+..|+-. +|+ .| ..|| ||.|.+..+|+++....++..+.+.++.+
T Consensus 10 ~~~~v~d~K~~Lr~y~~~-~I~--~d-~tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKYRWD-RIR--DD-RTGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CCccHHHHHHHHhcCCcc-eEE--ec-CCEE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 478899999999999753 333 22 3454 78999999999999999999888887664
No 170
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=26.88 E-value=57 Score=27.17 Aligned_cols=18 Identities=17% Similarity=0.517 Sum_probs=16.2
Q ss_pred HHHHHHHhhcCCceeEEE
Q 007955 389 EDVSNYFSIYGPVQDVRI 406 (583)
Q Consensus 389 edLre~FsqFG~V~~VrI 406 (583)
.+||++|++.|+|.-+.|
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 679999999999998876
No 171
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=25.43 E-value=31 Score=36.02 Aligned_cols=23 Identities=35% Similarity=0.742 Sum_probs=21.3
Q ss_pred CcceeecccccccCCCCCCccCC
Q 007955 230 GWRPCLYFARGYCKNGSSCRFVH 252 (583)
Q Consensus 230 ~~kpC~YFakG~Ck~G~sCry~H 252 (583)
---+|-.|-++.|.+|.-|-|.|
T Consensus 151 rea~C~~~e~~~C~rG~~CnFmH 173 (260)
T KOG2202|consen 151 REAICGQFERTECSRGGACNFMH 173 (260)
T ss_pred hhhhhcccccccCCCCCcCcchh
Confidence 44699999999999999999999
No 172
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]
Probab=23.61 E-value=28 Score=35.71 Aligned_cols=21 Identities=48% Similarity=1.081 Sum_probs=18.0
Q ss_pred ceeecccccccCCCCCCccCCC
Q 007955 232 RPCLYFARGYCKNGSSCRFVHG 253 (583)
Q Consensus 232 kpC~YFakG~Ck~G~sCry~Hg 253 (583)
--|.||--|-|.+ -+|||+|=
T Consensus 262 pacryfllgkcnn-pncryvhi 282 (377)
T KOG1492|consen 262 PACRYFLLGKCNN-PNCRYVHI 282 (377)
T ss_pred chhhhhhhccCCC-CCceEEEE
Confidence 3599999999977 58999994
No 173
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=23.03 E-value=85 Score=36.12 Aligned_cols=75 Identities=8% Similarity=0.037 Sum_probs=47.7
Q ss_pred cEEEEeCCCCCCCCHHHHHHHHh-hcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEc----CeEEEE
Q 007955 374 RQIYLTFPADSTFREEDVSNYFS-IYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVC----DARVLV 444 (583)
Q Consensus 374 rtIYVgnL~~~~~tEedLre~Fs-qFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~----GR~V~V 444 (583)
+++-|.++ +...|-.-|.+.-. ..|.=.-+.++.| ...|||||.|.+++++....++.||+..+ .+.+.+
T Consensus 389 tt~~ikni-pNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~i 467 (549)
T KOG4660|consen 389 TTLMIKNI-PNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASI 467 (549)
T ss_pred hhhHhhcc-CchhhHHhhhhhhccccCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeee
Confidence 45555666 44444444443311 2455566677776 36799999999999999999999887542 333444
Q ss_pred Eeccc
Q 007955 445 KPYKE 449 (583)
Q Consensus 445 k~Ak~ 449 (583)
.+|.-
T Consensus 468 tYArI 472 (549)
T KOG4660|consen 468 TYARI 472 (549)
T ss_pred ehhhh
Confidence 44443
No 174
>PF12186 AcylCoA_dehyd_C: Acyl-CoA dehydrogenase C terminal; InterPro: IPR020964 This entry represents the C-terminal alpha helical domain of some bacterial Acyl-CoA dehydrogenases. It is found in association with PF02770 from PFAM, PF00441 from PFAM, PF02771 from PFAM. There is a conserved ARRL sequence motif. ; PDB: 2OKU_A.
Probab=22.87 E-value=30 Score=32.04 Aligned_cols=15 Identities=40% Similarity=0.556 Sum_probs=12.0
Q ss_pred hhhHhhhhcccCChh
Q 007955 23 SKIMGLLLLQDHGEK 37 (583)
Q Consensus 23 ~ki~g~ll~qd~~e~ 37 (583)
-=|||||||||-++.
T Consensus 64 ~iims~LLl~dA~k~ 78 (114)
T PF12186_consen 64 HIIMSYLLLRDASKA 78 (114)
T ss_dssp HHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHh
Confidence 358999999998876
No 175
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=22.70 E-value=23 Score=39.18 Aligned_cols=64 Identities=13% Similarity=-0.053 Sum_probs=51.3
Q ss_pred CcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEeccCCCceEEEEECCHHHHHHHHHhCCCeEEc
Q 007955 373 SRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVC 438 (583)
Q Consensus 373 ~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~mng~~L~ 438 (583)
.+||||+.| ...+...++-+.|..+|+|...++...-..-++-|.|........|+.. ++..+.
T Consensus 151 rRt~~v~sl-~~~~~l~e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr~-~gre~k 214 (479)
T KOG4676|consen 151 RRTREVQSL-ISAAILPESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALRS-HGRERK 214 (479)
T ss_pred Hhhhhhhcc-hhhhcchhhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHHh-cchhhh
Confidence 489999999 8899999999999999999988875542334556999999999999887 444443
No 176
>KOG4791 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.23 E-value=33 Score=38.82 Aligned_cols=23 Identities=13% Similarity=-0.009 Sum_probs=21.4
Q ss_pred ceeecccccccCCCCCCccCCCC
Q 007955 232 RPCLYFARGYCKNGSSCRFVHGG 254 (583)
Q Consensus 232 kpC~YFakG~Ck~G~sCry~Hg~ 254 (583)
-||++|.||+|--|..|-|+|..
T Consensus 119 ~P~l~~~K~~e~~~D~~s~Lh~P 141 (667)
T KOG4791|consen 119 SPQLRSVKKVESSEDVPSPLHPP 141 (667)
T ss_pred chHHHHhhhhhhhccccccCCCC
Confidence 59999999999999999999963
No 177
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=20.14 E-value=1.1e+02 Score=29.02 Aligned_cols=39 Identities=18% Similarity=0.277 Sum_probs=34.0
Q ss_pred CCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc
Q 007955 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ 409 (583)
Q Consensus 370 ~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D 409 (583)
......++++++ ...+++.++...|..+|.+..+.+...
T Consensus 222 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (306)
T COG0724 222 LEKSDNLYVGNL-PLKTAEEELADLFKSRGDIVRASLPPS 260 (306)
T ss_pred ccccceeecccc-ccccchhHHHHhccccccceeeeccCC
Confidence 355778999999 999999999999999999988877664
Done!