Query 007955
Match_columns 583
No_of_seqs 410 out of 1712
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 14:36:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007955.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007955hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u1l_A PRE-mRNA-splicing facto 99.9 4.5E-24 1.6E-28 213.7 6.5 89 362-453 123-232 (240)
2 4f25_A Polyadenylate-binding p 99.7 7.3E-18 2.5E-22 148.7 9.8 82 372-454 4-87 (115)
3 4fxv_A ELAV-like protein 1; RN 99.7 8.8E-18 3E-22 145.1 9.9 78 371-449 17-98 (99)
4 3s8s_A Histone-lysine N-methyl 99.7 4E-17 1.4E-21 143.9 13.2 79 371-450 4-86 (110)
5 2lxi_A RNA-binding protein 10; 99.7 1.2E-17 4.1E-22 141.8 8.7 80 373-453 1-86 (91)
6 2cqb_A Peptidyl-prolyl CIS-tra 99.7 4.2E-17 1.4E-21 139.3 10.9 87 366-453 5-95 (102)
7 2dgs_A DAZ-associated protein 99.7 4.3E-17 1.5E-21 138.8 10.6 85 367-453 4-92 (99)
8 3mdf_A Peptidyl-prolyl CIS-tra 99.7 4.5E-17 1.5E-21 134.3 9.8 80 368-448 2-85 (85)
9 1whw_A Hypothetical protein ri 99.7 9.2E-17 3.1E-21 136.5 12.0 83 370-453 5-91 (99)
10 2e5h_A Zinc finger CCHC-type a 99.7 1.1E-16 3.6E-21 134.7 12.1 82 366-448 9-94 (94)
11 1x5s_A Cold-inducible RNA-bind 99.7 6.3E-17 2.2E-21 138.3 9.6 86 367-453 6-95 (102)
12 3bs9_A Nucleolysin TIA-1 isofo 99.7 6.9E-17 2.4E-21 133.7 9.3 79 371-450 4-86 (87)
13 3md1_A Nuclear and cytoplasmic 99.7 9.2E-17 3.1E-21 131.8 10.0 78 373-451 1-82 (83)
14 2cq3_A RNA-binding protein 9; 99.7 2.1E-16 7E-21 135.5 12.5 84 369-453 11-96 (103)
15 2cqi_A Nucleolysin TIAR; RNA r 99.7 2.4E-16 8.3E-21 135.1 12.9 83 370-453 12-96 (103)
16 2dgx_A KIAA0430 protein; RRM d 99.7 1.9E-16 6.4E-21 134.9 12.0 81 371-452 7-92 (96)
17 2lkz_A RNA-binding protein 5; 99.7 7.2E-17 2.5E-21 139.3 9.1 81 368-449 4-94 (95)
18 4a8x_A RNA-binding protein wit 99.7 1.4E-16 4.6E-21 132.0 10.3 79 372-451 3-86 (88)
19 1x5t_A Splicing factor 3B subu 99.7 1.6E-16 5.5E-21 134.1 10.6 82 371-453 3-89 (96)
20 2dgo_A Cytotoxic granule-assoc 99.7 2.4E-16 8.3E-21 137.6 11.9 84 370-454 12-99 (115)
21 1x5u_A Splicing factor 3B subu 99.7 1.9E-16 6.7E-21 135.9 11.1 84 369-453 11-98 (105)
22 1x4a_A Splicing factor, argini 99.7 2.4E-16 8.1E-21 136.7 11.7 83 370-453 19-102 (109)
23 1sjq_A Polypyrimidine tract-bi 99.7 9.4E-17 3.2E-21 141.9 9.3 82 370-454 13-96 (105)
24 2wbr_A GW182, gawky, LD47780P; 99.7 1.7E-16 6E-21 136.5 10.6 76 370-448 4-79 (89)
25 2do4_A Squamous cell carcinoma 99.7 2.5E-16 8.7E-21 134.3 11.4 82 370-452 14-98 (100)
26 2dnz_A Probable RNA-binding pr 99.7 1.7E-16 5.9E-21 133.6 10.0 82 371-453 3-88 (95)
27 2jvr_A Nucleolar protein 3; RN 99.7 2.2E-16 7.7E-21 140.2 11.1 81 370-451 25-106 (111)
28 2dnm_A SRP46 splicing factor; 99.7 1.4E-16 4.7E-21 136.6 9.2 84 369-453 9-96 (103)
29 2cq0_A Eukaryotic translation 99.7 2.3E-16 8E-21 135.2 10.6 83 370-453 12-98 (103)
30 2cpz_A CUG triplet repeat RNA- 99.7 1.9E-16 6.4E-21 138.6 10.2 83 370-453 22-108 (115)
31 2err_A Ataxin-2-binding protei 99.7 2.2E-16 7.6E-21 137.9 10.4 82 369-451 25-108 (109)
32 2x1f_A MRNA 3'-END-processing 99.7 2.5E-16 8.5E-21 133.6 10.4 82 373-455 2-87 (96)
33 1x4h_A RNA-binding protein 28; 99.7 3.3E-16 1.1E-20 135.5 11.2 83 370-453 12-104 (111)
34 1p27_B RNA-binding protein 8A; 99.7 1.7E-16 5.8E-21 136.5 9.3 82 370-452 20-105 (106)
35 2e5j_A Methenyltetrahydrofolat 99.7 1.5E-16 5.1E-21 135.4 8.7 82 369-452 15-96 (97)
36 1oo0_B CG8781-PA, drosophila Y 99.7 3.3E-16 1.1E-20 135.7 10.9 83 369-452 22-108 (110)
37 2dgw_A Probable RNA-binding pr 99.7 5.5E-16 1.9E-20 130.0 11.8 83 367-452 4-89 (91)
38 2dgp_A Bruno-like 4, RNA bindi 99.7 2.6E-16 8.8E-21 135.4 10.0 85 368-453 8-99 (106)
39 2ywk_A Putative RNA-binding pr 99.7 2.2E-16 7.4E-21 133.0 9.3 79 370-449 13-94 (95)
40 2cpf_A RNA binding motif prote 99.7 3.4E-16 1.2E-20 132.7 10.5 82 371-453 3-91 (98)
41 2ytc_A PRE-mRNA-splicing facto 99.7 4.7E-16 1.6E-20 128.4 10.9 77 369-448 8-85 (85)
42 2dgv_A HnRNP M, heterogeneous 99.7 1.7E-16 5.8E-21 132.9 8.3 83 370-453 5-89 (92)
43 2cqc_A Arginine/serine-rich sp 99.7 4.1E-16 1.4E-20 131.1 10.6 79 370-449 12-94 (95)
44 1x4c_A Splicing factor, argini 99.7 1E-15 3.5E-20 133.1 13.2 80 370-453 12-96 (108)
45 3p5t_L Cleavage and polyadenyl 99.6 5.3E-17 1.8E-21 136.6 4.6 79 374-453 2-86 (90)
46 2div_A TRNA selenocysteine ass 99.6 3.2E-16 1.1E-20 133.2 9.5 82 370-452 6-96 (99)
47 2dnh_A Bruno-like 5, RNA bindi 99.6 3.3E-16 1.1E-20 134.5 9.6 83 370-453 12-100 (105)
48 1s79_A Lupus LA protein; RRM, 99.6 1.5E-16 5.2E-21 138.8 7.6 77 371-449 9-88 (103)
49 2dh8_A DAZ-associated protein 99.6 2.4E-16 8.2E-21 135.5 8.7 84 369-454 12-99 (105)
50 3ucg_A Polyadenylate-binding p 99.6 5E-16 1.7E-20 129.0 10.3 78 372-451 5-86 (89)
51 1u6f_A Tcubp1, RNA-binding pro 99.6 6.5E-16 2.2E-20 139.2 11.6 85 369-454 38-126 (139)
52 2la4_A Nuclear and cytoplasmic 99.6 2.9E-16 9.9E-21 134.1 8.8 77 371-450 25-101 (101)
53 2d9p_A Polyadenylate-binding p 99.6 3.4E-16 1.2E-20 134.1 9.1 82 371-453 13-96 (103)
54 2cph_A RNA binding motif prote 99.6 5.4E-16 1.9E-20 133.3 10.2 84 369-453 11-100 (107)
55 2dgt_A RNA-binding protein 30; 99.6 1.3E-15 4.4E-20 128.2 12.3 81 368-453 5-85 (92)
56 2cqd_A RNA-binding region cont 99.6 9.6E-16 3.3E-20 134.3 11.9 83 369-453 13-99 (116)
57 3ns6_A Eukaryotic translation 99.6 7.7E-17 2.6E-21 138.7 4.7 77 373-450 6-93 (100)
58 2rs2_A Musashi-1, RNA-binding 99.6 8.4E-16 2.9E-20 134.4 11.4 81 371-453 23-107 (109)
59 2dnq_A RNA-binding protein 4B; 99.6 5.8E-16 2E-20 129.8 10.0 79 370-453 5-83 (90)
60 2cpi_A CCR4-NOT transcription 99.6 4E-16 1.4E-20 136.5 9.3 81 371-452 13-103 (111)
61 2do0_A HnRNP M, heterogeneous 99.6 8.2E-16 2.8E-20 133.8 11.0 82 370-452 12-96 (114)
62 3s7r_A Heterogeneous nuclear r 99.6 9.6E-16 3.3E-20 127.3 10.8 76 370-447 8-87 (87)
63 2cpe_A RNA-binding protein EWS 99.6 7.7E-16 2.6E-20 134.1 10.7 83 370-453 12-106 (113)
64 3n9u_C Cleavage and polyadenyl 99.6 3.6E-16 1.2E-20 146.1 8.9 80 371-451 53-138 (156)
65 1whx_A Hypothetical protein ri 99.6 2.6E-16 8.8E-21 138.2 7.5 80 369-451 6-85 (111)
66 1x4d_A Matrin 3; structural ge 99.6 3.2E-16 1.1E-20 137.4 8.0 79 371-452 13-94 (102)
67 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 1.3E-15 4.3E-20 136.5 12.0 80 367-447 57-140 (140)
68 2fy1_A RNA-binding motif prote 99.6 7.4E-16 2.5E-20 136.3 10.3 82 371-453 5-89 (116)
69 2khc_A Testis-specific RNP-typ 99.6 7.4E-16 2.5E-20 135.1 10.1 79 369-448 36-118 (118)
70 3r27_A HnRNP L, heterogeneous 99.6 7.6E-16 2.6E-20 135.0 10.2 80 369-451 17-98 (100)
71 1why_A Hypothetical protein ri 99.6 9.9E-16 3.4E-20 130.1 10.6 80 370-452 14-95 (97)
72 2cqp_A RNA-binding protein 12; 99.6 5.3E-16 1.8E-20 131.6 8.9 82 369-451 11-96 (98)
73 2cpj_A Non-POU domain-containi 99.6 6.3E-16 2.1E-20 131.8 9.4 80 370-452 12-91 (99)
74 1x4g_A Nucleolysin TIAR; struc 99.6 1E-15 3.5E-20 132.9 10.7 80 371-453 23-102 (109)
75 1nu4_A U1A RNA binding domain; 99.6 4.3E-16 1.5E-20 131.7 8.1 83 371-454 6-93 (97)
76 2dgu_A Heterogeneous nuclear r 99.6 1.7E-15 5.7E-20 130.3 11.8 80 370-454 8-87 (103)
77 2cq1_A PTB-like protein L; RRM 99.6 1.1E-15 3.8E-20 133.3 10.6 80 371-453 13-94 (101)
78 2a3j_A U1 small nuclear ribonu 99.6 8.7E-16 3E-20 139.3 10.2 82 370-452 26-112 (127)
79 2dng_A Eukaryotic translation 99.6 9.8E-16 3.3E-20 131.5 10.0 81 370-453 12-96 (103)
80 1x4b_A Heterogeneous nuclear r 99.6 1.3E-15 4.4E-20 133.4 10.9 80 372-453 26-109 (116)
81 2kxn_B Transformer-2 protein h 99.6 5.4E-16 1.9E-20 140.1 8.5 82 370-452 43-128 (129)
82 2ad9_A Polypyrimidine tract-bi 99.6 7.8E-16 2.7E-20 138.7 9.5 82 370-454 28-111 (119)
83 3ulh_A THO complex subunit 4; 99.6 1.1E-15 3.8E-20 131.6 10.0 79 369-448 25-106 (107)
84 2m2b_A RNA-binding protein 10; 99.6 3E-16 1E-20 141.1 6.7 82 370-453 20-111 (131)
85 1wi8_A EIF-4B, eukaryotic tran 99.6 1.2E-15 4E-20 131.2 10.1 80 371-453 13-97 (104)
86 2nlw_A Eukaryotic translation 99.6 1.1E-15 3.6E-20 132.5 9.8 80 372-452 14-102 (105)
87 2jrs_A RNA-binding protein 39; 99.6 6.3E-16 2.1E-20 135.2 8.5 82 369-451 22-107 (108)
88 2dhg_A TRNA selenocysteine ass 99.6 5.9E-16 2E-20 132.6 8.2 82 371-453 7-93 (104)
89 2kt5_A RNA and export factor-b 99.6 2.6E-15 9E-20 133.1 12.5 85 368-453 30-117 (124)
90 2la6_A RNA-binding protein FUS 99.6 8.4E-16 2.9E-20 131.0 8.9 80 368-448 8-99 (99)
91 3ex7_B RNA-binding protein 8A; 99.6 8.8E-16 3E-20 136.2 9.4 85 369-454 18-106 (126)
92 3d2w_A TAR DNA-binding protein 99.6 1E-15 3.4E-20 129.6 9.3 80 369-452 7-86 (89)
93 2cqg_A TDP-43, TAR DNA-binding 99.6 3.3E-15 1.1E-19 128.0 12.2 81 370-453 12-96 (103)
94 2mss_A Protein (musashi1); RNA 99.6 4.6E-16 1.6E-20 125.8 6.4 71 375-447 1-75 (75)
95 2cq4_A RNA binding motif prote 99.6 7.8E-16 2.7E-20 134.4 8.3 78 371-450 23-104 (114)
96 2hvz_A Splicing factor, argini 99.6 5.6E-16 1.9E-20 132.3 7.2 78 374-453 1-78 (101)
97 1p1t_A Cleavage stimulation fa 99.6 6.1E-16 2.1E-20 132.3 7.5 81 371-452 6-90 (104)
98 2kn4_A Immunoglobulin G-bindin 99.6 1.7E-15 5.8E-20 139.1 10.9 83 370-453 67-153 (158)
99 2cqh_A IGF-II mRNA-binding pro 99.6 9.4E-16 3.2E-20 129.0 8.4 80 370-453 5-86 (93)
100 2cpy_A RNA-binding protein 12; 99.6 1.2E-15 4.1E-20 134.1 9.3 79 370-450 12-94 (114)
101 1x5p_A Negative elongation fac 99.6 5.2E-15 1.8E-19 125.8 13.0 78 371-453 13-90 (97)
102 2dis_A Unnamed protein product 99.6 1.4E-15 4.9E-20 131.3 9.7 82 371-453 6-95 (109)
103 1wex_A Hypothetical protein (r 99.6 9.4E-16 3.2E-20 134.3 8.5 79 371-452 13-93 (104)
104 2ek1_A RNA-binding protein 12; 99.6 5.3E-16 1.8E-20 130.6 6.7 78 370-448 12-93 (95)
105 1wg5_A Heterogeneous nuclear r 99.6 1.3E-15 4.5E-20 131.7 9.1 80 370-451 12-95 (104)
106 2xnq_A Nuclear polyadenylated 99.6 2.7E-15 9.1E-20 128.6 10.9 78 369-451 18-96 (97)
107 2dnp_A RNA-binding protein 14; 99.6 3E-15 1E-19 125.5 10.9 79 370-453 6-84 (90)
108 1uaw_A Mouse-musashi-1; RNP-ty 99.6 6.3E-16 2.2E-20 125.1 6.4 72 374-447 1-76 (77)
109 1h2v_Z 20 kDa nuclear CAP bind 99.6 2.6E-15 8.9E-20 138.2 11.3 83 371-454 37-123 (156)
110 3lqv_A PRE-mRNA branch site pr 99.6 1.2E-15 4.2E-20 133.1 8.7 79 371-450 6-85 (115)
111 2ki2_A SS-DNA binding protein 99.6 3E-16 1E-20 131.1 4.4 78 374-453 2-83 (90)
112 2i2y_A Fusion protein consists 99.6 1.4E-15 4.7E-20 139.2 9.2 81 369-451 69-149 (150)
113 2jvo_A Nucleolar protein 3; nu 99.6 2.1E-15 7.3E-20 131.9 9.9 79 370-453 28-106 (108)
114 2j76_E EIF-4B, EIF4B, eukaryot 99.6 6.2E-16 2.1E-20 132.7 6.2 79 370-451 16-99 (100)
115 2hgl_A HNRPF protein, heteroge 99.6 1.1E-15 3.9E-20 140.2 8.4 80 368-449 39-124 (136)
116 2db1_A Heterogeneous nuclear r 99.6 1.3E-15 4.5E-20 135.1 8.4 78 370-449 14-97 (118)
117 2cpx_A Hypothetical protein FL 99.6 3.5E-15 1.2E-19 130.1 10.7 82 371-453 23-108 (115)
118 2fc9_A NCL protein; structure 99.6 3.3E-15 1.1E-19 127.5 10.3 80 369-452 11-93 (101)
119 2jwn_A Embryonic polyadenylate 99.6 2.3E-15 7.7E-20 133.1 9.5 78 373-452 36-117 (124)
120 1fj7_A Nucleolin RBD1, protein 99.6 6.4E-16 2.2E-20 132.0 5.6 82 370-454 14-99 (101)
121 2krb_A Eukaryotic translation 99.6 8.1E-16 2.8E-20 126.7 5.9 71 373-444 1-80 (81)
122 2cpd_A Apobec-1 stimulating pr 99.6 7.3E-15 2.5E-19 125.2 11.8 78 370-452 12-91 (99)
123 1x4f_A Matrin 3; structural ge 99.6 1.2E-15 4E-20 136.2 7.0 80 371-453 23-105 (112)
124 2dnn_A RNA-binding protein 12; 99.6 2.5E-15 8.5E-20 132.8 9.0 76 371-449 14-92 (109)
125 1wez_A HnRNP H', FTP-3, hetero 99.6 1.7E-15 5.9E-20 131.4 7.5 81 369-452 11-94 (102)
126 1x4e_A RNA binding motif, sing 99.6 4.8E-16 1.6E-20 128.6 3.7 77 371-448 3-83 (85)
127 1fjc_A Nucleolin RBD2, protein 99.6 3.2E-15 1.1E-19 126.3 8.7 82 370-453 13-94 (96)
128 2lea_A Serine/arginine-rich sp 99.6 1.7E-15 5.7E-20 137.8 7.4 84 370-454 44-131 (135)
129 2kvi_A Nuclear polyadenylated 99.6 2.2E-15 7.5E-20 128.1 7.6 79 370-453 7-86 (96)
130 2e44_A Insulin-like growth fac 99.6 4E-15 1.4E-19 125.7 8.9 80 371-451 13-93 (96)
131 1wf1_A RNA-binding protein RAL 99.6 5.6E-15 1.9E-19 128.4 9.9 77 371-452 25-102 (110)
132 1wg1_A KIAA1579 protein, homol 99.6 5.6E-15 1.9E-19 123.7 9.3 77 371-451 3-79 (88)
133 1rk8_A CG8781-PA, CG8781-PA pr 99.6 6E-15 2E-19 137.6 10.4 84 370-454 69-156 (165)
134 4f02_A Polyadenylate-binding p 99.6 2E-15 6.9E-20 145.5 6.9 79 372-451 102-182 (213)
135 1iqt_A AUF1, heterogeneous nuc 99.6 1.6E-15 5.6E-20 122.3 5.3 71 375-447 1-75 (75)
136 2cq2_A Hypothetical protein LO 99.6 5.7E-15 1.9E-19 132.3 9.3 78 371-451 23-107 (114)
137 2lmi_A GRSF-1, G-rich sequence 99.6 1.8E-15 6E-20 131.5 5.4 78 370-449 8-91 (107)
138 1x5o_A RNA binding motif, sing 99.6 5.3E-15 1.8E-19 128.9 8.3 81 370-451 22-113 (114)
139 1wf0_A TDP-43, TAR DNA-binding 99.6 5.4E-15 1.8E-19 123.4 7.8 78 372-453 4-81 (88)
140 3egn_A RNA-binding protein 40; 99.6 7.5E-15 2.6E-19 133.3 9.0 84 371-455 43-135 (143)
141 2hzc_A Splicing factor U2AF 65 99.6 1.1E-14 3.9E-19 120.3 9.2 72 371-446 4-86 (87)
142 3q2s_C Cleavage and polyadenyl 99.5 3.7E-15 1.3E-19 147.2 7.3 78 372-450 67-150 (229)
143 1sjr_A Polypyrimidine tract-bi 99.5 1.1E-14 3.7E-19 138.3 10.1 80 372-452 45-126 (164)
144 1wel_A RNA-binding protein 12; 99.5 1.6E-15 5.5E-20 134.9 4.2 80 370-451 22-105 (124)
145 2e5g_A U6 snRNA-specific termi 99.5 1.7E-14 5.9E-19 121.9 10.3 79 371-452 6-84 (94)
146 2xs2_A Deleted in azoospermia- 99.5 4.4E-15 1.5E-19 127.0 6.5 80 371-453 7-89 (102)
147 2fc8_A NCL protein; structure 99.5 2.1E-14 7.1E-19 122.6 9.5 81 369-453 11-95 (102)
148 2dha_A FLJ20171 protein; RRM d 99.5 7E-15 2.4E-19 132.8 6.3 77 371-449 21-104 (123)
149 2lcw_A RNA-binding protein FUS 99.3 7.8E-16 2.7E-20 135.0 0.0 81 371-452 5-97 (116)
150 2bz2_A Negative elongation fac 99.5 2.1E-14 7.1E-19 128.5 8.8 78 371-453 37-114 (121)
151 3tyt_A Heterogeneous nuclear r 99.5 3.4E-14 1.2E-18 137.7 10.7 78 372-451 3-81 (205)
152 1fxl_A Paraneoplastic encephal 99.5 3.6E-14 1.2E-18 128.4 10.1 79 372-451 1-83 (167)
153 3beg_B Splicing factor, argini 99.5 1.3E-14 4.3E-19 128.0 6.8 77 371-451 14-95 (115)
154 4f02_A Polyadenylate-binding p 99.5 3.2E-14 1.1E-18 137.1 10.1 79 372-451 14-96 (213)
155 2f3j_A RNA and export factor b 99.5 3.5E-14 1.2E-18 135.1 10.2 82 369-451 84-168 (177)
156 1b7f_A Protein (SXL-lethal pro 99.5 3.7E-14 1.3E-18 128.9 9.6 80 372-452 2-85 (168)
157 2hgn_A Heterogeneous nuclear r 99.5 5.8E-15 2E-19 136.1 4.2 80 371-453 44-126 (139)
158 3md3_A Nuclear and cytoplasmic 99.5 3.3E-14 1.1E-18 128.5 9.1 78 374-452 1-81 (166)
159 2dnl_A Cytoplasmic polyadenyla 99.5 4.5E-14 1.6E-18 123.9 9.6 76 371-450 6-88 (114)
160 2hgm_A HNRPF protein, heteroge 99.5 1.4E-14 4.6E-19 131.7 6.3 76 371-449 40-120 (126)
161 3md3_A Nuclear and cytoplasmic 99.5 8.5E-14 2.9E-18 125.8 10.9 79 370-449 84-166 (166)
162 2e5i_A Heterogeneous nuclear r 99.5 1.7E-13 5.9E-18 124.2 12.4 76 374-452 26-104 (124)
163 2cjk_A Nuclear polyadenylated 99.5 3.7E-14 1.2E-18 129.2 7.9 77 372-450 86-166 (167)
164 3zzy_A Polypyrimidine tract-bi 99.5 9.9E-14 3.4E-18 127.0 10.4 79 372-452 27-108 (130)
165 1l3k_A Heterogeneous nuclear r 99.5 9.2E-14 3.2E-18 129.7 10.1 81 370-452 10-94 (196)
166 2adc_A Polypyrimidine tract-bi 99.5 6.6E-14 2.2E-18 136.4 9.3 83 366-450 27-110 (229)
167 2yh0_A Splicing factor U2AF 65 99.5 1E-13 3.4E-18 129.6 10.2 82 371-453 112-197 (198)
168 1l3k_A Heterogeneous nuclear r 99.5 9.9E-14 3.4E-18 129.5 10.1 82 371-454 102-187 (196)
169 2qfj_A FBP-interacting repress 99.5 9.3E-14 3.2E-18 131.6 9.1 81 371-452 123-207 (216)
170 3pgw_A U1-A; protein-RNA compl 99.5 1.6E-13 5.6E-18 136.3 11.3 83 369-452 5-92 (282)
171 2g4b_A Splicing factor U2AF 65 99.5 9.2E-14 3.2E-18 127.1 8.4 77 371-448 92-172 (172)
172 3pgw_S U1-70K; protein-RNA com 99.5 1.6E-13 5.5E-18 147.7 11.0 81 371-452 100-184 (437)
173 2qfj_A FBP-interacting repress 99.4 1.6E-13 5.6E-18 129.9 8.8 81 373-454 28-112 (216)
174 2voo_A Lupus LA protein; RNA-b 99.4 2.4E-13 8.2E-18 130.8 10.1 76 373-450 109-187 (193)
175 2pe8_A Splicing factor 45; RRM 99.4 3.3E-13 1.1E-17 118.3 10.1 79 371-449 6-93 (105)
176 2diu_A KIAA0430 protein; struc 99.4 1.9E-13 6.6E-18 118.9 8.4 79 369-454 5-88 (96)
177 2j8a_A Histone-lysine N-methyl 99.4 2.9E-13 1E-17 124.2 9.6 75 374-448 3-94 (136)
178 2dit_A HIV TAT specific factor 99.4 5.6E-13 1.9E-17 116.8 11.0 81 371-452 13-104 (112)
179 3nmr_A Cugbp ELAV-like family 99.4 2E-13 7E-18 124.6 7.9 80 372-452 2-90 (175)
180 2cjk_A Nuclear polyadenylated 99.4 2.2E-13 7.6E-18 124.0 7.9 76 372-450 2-81 (167)
181 3sde_A Paraspeckle component 1 99.4 3.1E-13 1.1E-17 134.2 9.4 78 372-450 95-179 (261)
182 1qm9_A Polypyrimidine tract-bi 99.4 1.7E-13 5.9E-18 129.0 7.1 78 372-451 2-80 (198)
183 1fje_B Nucleolin RBD12, protei 99.4 3.2E-13 1.1E-17 124.3 8.6 80 370-451 96-175 (175)
184 3pgw_A U1-A; protein-RNA compl 99.4 6.9E-13 2.4E-17 131.8 11.1 77 370-448 204-281 (282)
185 3nmr_A Cugbp ELAV-like family 99.4 3.3E-13 1.1E-17 123.2 7.9 76 371-447 93-174 (175)
186 1b7f_A Protein (SXL-lethal pro 99.4 5.9E-13 2E-17 121.0 8.8 77 370-447 86-168 (168)
187 1fxl_A Paraneoplastic encephal 99.4 7.3E-13 2.5E-17 119.7 8.1 76 371-447 86-167 (167)
188 3smz_A Protein raver-1, ribonu 99.4 1.1E-12 3.6E-17 130.5 10.1 85 371-456 182-270 (284)
189 2g4b_A Splicing factor U2AF 65 99.4 1.6E-12 5.5E-17 118.8 10.1 76 372-451 3-89 (172)
190 2yh0_A Splicing factor U2AF 65 99.4 2E-12 6.9E-17 120.8 10.6 77 372-452 3-90 (198)
191 3sde_A Paraspeckle component 1 99.4 1.5E-12 5.2E-17 129.3 10.3 78 370-450 19-96 (261)
192 2d9o_A DNAJ (HSP40) homolog, s 99.4 4.3E-12 1.5E-16 110.8 11.4 84 367-453 4-93 (100)
193 2ghp_A U4/U6 snRNA-associated 99.4 1.9E-12 6.3E-17 129.3 10.3 80 370-451 207-292 (292)
194 1fje_B Nucleolin RBD12, protei 99.4 9.4E-13 3.2E-17 121.2 7.5 82 369-452 9-93 (175)
195 1qm9_A Polypyrimidine tract-bi 99.3 1.8E-12 6.1E-17 122.1 7.4 78 371-450 118-197 (198)
196 3smz_A Protein raver-1, ribonu 99.3 5.1E-12 1.7E-16 125.6 10.4 81 371-452 93-177 (284)
197 1jmt_A Splicing factor U2AF 35 99.3 8.1E-13 2.8E-17 115.4 3.6 69 378-447 20-103 (104)
198 2adc_A Polypyrimidine tract-bi 99.3 4.3E-12 1.5E-16 123.5 9.1 78 371-450 149-228 (229)
199 2ghp_A U4/U6 snRNA-associated 99.3 7.2E-12 2.5E-16 125.0 9.5 80 372-452 116-199 (292)
200 3tyt_A Heterogeneous nuclear r 99.3 5E-12 1.7E-16 122.5 7.7 76 371-447 121-204 (205)
201 3v4m_A Splicing factor U2AF 65 99.3 1.5E-11 5E-16 107.7 8.9 78 372-449 4-96 (105)
202 3tht_A Alkylated DNA repair pr 99.2 1.5E-11 5.3E-16 128.9 9.5 76 370-448 15-97 (345)
203 3s6e_A RNA-binding protein 39; 99.2 2.3E-11 8E-16 108.5 9.3 78 372-449 6-92 (114)
204 3ue2_A Poly(U)-binding-splicin 99.2 2.3E-11 7.8E-16 109.1 7.8 78 372-449 19-108 (118)
205 2dnr_A Synaptojanin-1; RRM dom 98.9 3.4E-09 1.2E-13 91.4 9.1 76 370-450 4-86 (91)
206 1ufw_A Synaptojanin 2; RNP dom 98.7 4.6E-08 1.6E-12 84.9 8.4 75 368-448 10-93 (95)
207 1owx_A Lupus LA protein, SS-B, 98.6 7.1E-08 2.4E-12 87.3 8.1 75 371-448 16-94 (121)
208 3dxb_A Thioredoxin N-terminall 98.6 3.9E-08 1.3E-12 95.0 5.6 63 386-448 141-211 (222)
209 2l9w_A U4/U6 snRNA-associated- 97.4 0.00062 2.1E-08 60.8 9.7 73 372-447 20-97 (117)
210 2dhx_A Poly (ADP-ribose) polym 97.3 0.0012 4.2E-08 58.1 10.0 76 371-452 6-86 (104)
211 2cqe_A KIAA1064 protein; CCCH 96.7 0.00087 3E-08 58.3 3.5 21 232-252 14-34 (98)
212 1wwh_A Nucleoporin 35, nucleop 96.3 0.013 4.4E-07 52.8 8.4 72 372-448 23-95 (119)
213 2d9m_A Zinc finger CCCH-type d 96.3 0.0018 6.2E-08 53.0 2.6 24 231-254 20-43 (69)
214 2rhk_C Cleavage and polyadenyl 96.2 0.0011 3.7E-08 54.5 1.0 25 229-253 14-38 (72)
215 2d9n_A Cleavage and polyadenyl 96.2 0.0013 4.3E-08 54.6 1.2 24 230-253 9-32 (77)
216 1wey_A Calcipressin 1; structu 96.1 0.011 3.8E-07 52.0 7.0 74 373-449 5-83 (104)
217 1m9o_A Tristetraproline; Cys3H 96.0 0.0036 1.2E-07 51.2 3.1 27 228-254 9-36 (77)
218 1i2t_A HYD protein; four alpha 95.8 0.0056 1.9E-07 49.0 3.3 51 8-61 7-57 (61)
219 3d2q_A Muscleblind-like protei 95.7 0.0026 8.9E-08 51.8 1.0 22 232-253 7-29 (70)
220 3p3d_A Nucleoporin 53; structu 95.2 0.03 1E-06 51.2 6.4 72 374-448 8-97 (132)
221 3d2n_A Muscleblind-like protei 95.2 0.0061 2.1E-07 51.5 1.7 23 231-253 9-32 (83)
222 2cqe_A KIAA1064 protein; CCCH 95.1 0.006 2E-07 53.0 1.3 23 231-253 36-59 (98)
223 1m9o_A Tristetraproline; Cys3H 95.0 0.0042 1.4E-07 50.7 0.0 24 231-254 50-74 (77)
224 2dyd_A Poly(A)-binding protein 94.9 0.01 3.4E-07 50.6 2.2 51 8-61 28-78 (85)
225 3d2q_A Muscleblind-like protei 94.9 0.0062 2.1E-07 49.5 0.9 23 230-253 41-63 (70)
226 2e5s_A Otthump00000018578; ZF- 94.9 0.0054 1.9E-07 53.3 0.4 23 231-253 20-43 (98)
227 1ifw_A Polyadenylate-binding p 94.5 0.02 6.7E-07 49.4 3.1 52 8-62 26-79 (92)
228 3pq1_A Poly(A) RNA polymerase; 94.3 0.022 7.5E-07 62.0 3.6 56 373-431 53-108 (464)
229 2e5s_A Otthump00000018578; ZF- 94.3 0.0094 3.2E-07 51.8 0.6 24 229-253 54-77 (98)
230 2rpp_A Muscleblind-like protei 94.3 0.011 3.6E-07 50.8 0.8 23 231-253 17-40 (89)
231 1nmr_A Poly(A)-binding protein 94.1 0.013 4.4E-07 49.9 1.0 51 8-61 29-79 (85)
232 3kuj_A Polyadenylate-binding p 93.9 0.044 1.5E-06 46.9 4.0 52 9-63 27-78 (88)
233 3d2n_A Muscleblind-like protei 93.4 0.02 6.7E-07 48.4 0.8 23 230-253 42-64 (83)
234 2kn4_A Immunoglobulin G-bindin 93.3 0.031 1.1E-06 50.4 2.2 32 403-434 2-35 (158)
235 2d9n_A Cleavage and polyadenyl 93.1 0.025 8.5E-07 46.7 1.0 23 231-254 38-61 (77)
236 1g9l_A Polyadenylate-binding p 92.9 0.044 1.5E-06 50.8 2.5 51 10-63 74-124 (144)
237 2rhk_C Cleavage and polyadenyl 92.8 0.027 9.2E-07 46.2 0.8 24 230-254 43-67 (72)
238 1whv_A Poly(A)-specific ribonu 92.5 0.31 1E-05 42.6 7.0 53 374-432 17-69 (100)
239 1uw4_A UPF3X; nonsense mediate 92.2 0.38 1.3E-05 41.2 7.2 65 374-439 2-72 (91)
240 2rpp_A Muscleblind-like protei 90.2 0.068 2.3E-06 45.7 0.6 23 230-253 50-72 (89)
241 3ctr_A Poly(A)-specific ribonu 89.3 0.34 1.2E-05 42.4 4.3 54 374-433 7-60 (101)
242 2i2y_A Fusion protein consists 88.4 0.14 4.6E-06 46.0 1.2 40 410-450 11-51 (150)
243 2fc6_A Nuclear, target of EGR1 79.9 0.47 1.6E-05 36.4 0.6 25 229-253 18-43 (50)
244 2l08_A Regulator of nonsense t 75.7 3.4 0.00012 35.8 4.9 67 372-439 8-80 (97)
245 3d45_A Poly(A)-specific ribonu 66.8 11 0.00038 41.1 7.7 55 373-433 440-494 (507)
246 3u9g_A Zinc finger CCCH-type a 42.4 7.6 0.00026 38.4 1.1 25 229-253 87-115 (229)
247 3u9g_A Zinc finger CCCH-type a 41.7 16 0.00055 36.1 3.3 23 230-253 174-196 (229)
248 3v33_A Ribonuclease ZC3H12A; r 32.9 10 0.00035 37.4 0.3 23 228-252 189-211 (223)
249 3dve_B Voltage-dependent N-typ 32.5 8.9 0.0003 25.0 -0.1 14 21-34 1-14 (23)
250 3dvk_B Voltage-dependent R-typ 30.2 10 0.00035 24.7 -0.1 14 21-34 2-15 (23)
251 2g0c_A ATP-dependent RNA helic 24.7 1E+02 0.0035 24.1 4.9 69 375-448 2-75 (76)
252 3e50_C Protransforming growth 22.6 19 0.00066 27.3 0.2 21 232-253 6-26 (50)
253 3bee_A Putative YFRE protein; 22.1 1.5E+02 0.0052 24.0 5.7 57 4-60 25-92 (93)
254 2rnl_A Amphiregulin; AR, color 21.5 17 0.00059 27.5 -0.3 21 232-253 10-30 (50)
No 1
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.89 E-value=4.5e-24 Score=213.70 Aligned_cols=89 Identities=20% Similarity=0.258 Sum_probs=73.2
Q ss_pred cCCCCCCCCCCCcEEEEeCCCCCCC---------CHHHHHHHHhhcCCceeEEEeccCCCceEEEEECCHHHHHHHHHhC
Q 007955 362 INGSAGIVNPASRQIYLTFPADSTF---------REEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKG 432 (583)
Q Consensus 362 ~~g~~g~~~~~~rtIYVgnL~~~~~---------tEedLre~FsqFG~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~m 432 (583)
.|++.+......+|||||+| +..+ +|++|+++|++||+|++|+|+. +||||||+|.+.++|++|++.|
T Consensus 123 ~~~g~gs~~~~~rtLfVgnL-~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~--~kG~AFV~F~~~~~Ae~A~~am 199 (240)
T 3u1l_A 123 DMGGIGSFRKKNKTLYVGGI-DGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE--SKNCGFVKFKYQANAEFAKEAM 199 (240)
T ss_dssp --------CCCCCEEEEECT-TGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG--GGTEEEEEESSHHHHHHHHHHH
T ss_pred cccCcCccccCCceeecCCC-ChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC--CCCEEEEEeCCHHHHHHHHHHh
Confidence 45556677888999999999 8777 7999999999999999999998 8999999999999999999999
Q ss_pred CCeEE------------cCeEEEEEecccCCCC
Q 007955 433 NPHFV------------CDARVLVKPYKEKGKV 453 (583)
Q Consensus 433 ng~~L------------~GR~V~Vk~Ak~K~k~ 453 (583)
+++.| .|+.|.|+||.++...
T Consensus 200 ~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~pnp 232 (240)
T 3u1l_A 200 SNQTLLLPSDKEWDDRREGTGLLVKWANEDPDP 232 (240)
T ss_dssp TTCCCCCTTSTTGGGGGGSCCCEEEECC-----
T ss_pred CCCEEeccccccccccCCCCEEEEEEccCCCCH
Confidence 99999 8999999999876543
No 2
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.73 E-value=7.3e-18 Score=148.66 Aligned_cols=82 Identities=21% Similarity=0.395 Sum_probs=75.0
Q ss_pred CCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc--CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEeccc
Q 007955 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ--QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (583)
Q Consensus 372 ~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D--ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~Ak~ 449 (583)
..++|||+|| ++++||++|+++|++||+|.+|+|+.| ++||||||+|.+.++|++|++.|+++.|+|+.|.|.++++
T Consensus 4 ~~~~lfV~nL-p~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 4 GSGNIFIKNL-DKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp -CCEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCCEEEECCC-CCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 3578999999 999999999999999999999999987 5789999999999999999999999999999999999988
Q ss_pred CCCCc
Q 007955 450 KGKVP 454 (583)
Q Consensus 450 K~k~~ 454 (583)
+....
T Consensus 83 ~~~~~ 87 (115)
T 4f25_A 83 RKERE 87 (115)
T ss_dssp CCC--
T ss_pred ccccc
Confidence 76543
No 3
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.73 E-value=8.8e-18 Score=145.13 Aligned_cols=78 Identities=13% Similarity=0.241 Sum_probs=73.5
Q ss_pred CCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 007955 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (583)
Q Consensus 371 ~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~ 446 (583)
...++|||+|| ++++||++|+++|++||+|.+|+|++| ++||||||+|.+.++|++|++.||+..|.|+.|.|.+
T Consensus 17 ~~gt~lfV~nL-p~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~ 95 (99)
T 4fxv_A 17 FQGTNLIVNYL-PQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95 (99)
T ss_dssp CCCSEEEEESC-CTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34578999999 999999999999999999999999986 5899999999999999999999999999999999999
Q ss_pred ccc
Q 007955 447 YKE 449 (583)
Q Consensus 447 Ak~ 449 (583)
|+|
T Consensus 96 AkP 98 (99)
T 4fxv_A 96 ARP 98 (99)
T ss_dssp CCB
T ss_pred eeC
Confidence 975
No 4
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.72 E-value=4e-17 Score=143.88 Aligned_cols=79 Identities=14% Similarity=0.112 Sum_probs=74.3
Q ss_pred CCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 007955 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (583)
Q Consensus 371 ~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~ 446 (583)
+..++|||+|| +++++|++|+++|++||+|.+|+|++| ++||||||+|.+.++|++|++.||+..|+|+.|.|.+
T Consensus 4 ~p~~~lfV~nL-~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 4 IPLKEVTFARL-NDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp SCCCEEEEESC-CTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCcEEEEECC-CCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 45789999999 999999999999999999999999987 5899999999999999999999999999999999999
Q ss_pred cccC
Q 007955 447 YKEK 450 (583)
Q Consensus 447 Ak~K 450 (583)
+..+
T Consensus 83 a~~~ 86 (110)
T 3s8s_A 83 DIKG 86 (110)
T ss_dssp CSTT
T ss_pred CCCC
Confidence 8644
No 5
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.72 E-value=1.2e-17 Score=141.81 Aligned_cols=80 Identities=20% Similarity=0.269 Sum_probs=73.7
Q ss_pred CcEEEEeCCCCCCCCHHHHHHHHhhcC-CceeEEEecc----CCCceEEEEECCHHHHHHHHHhC-CCeEEcCeEEEEEe
Q 007955 373 SRQIYLTFPADSTFREEDVSNYFSIYG-PVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKG-NPHFVCDARVLVKP 446 (583)
Q Consensus 373 ~rtIYVgnL~~~~~tEedLre~FsqFG-~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~m-ng~~L~GR~V~Vk~ 446 (583)
+++|||+|| ++++||++|+++|++|| +|.+|+|++| ++||||||+|.+.++|++|++.+ ++..|+|++|.|.+
T Consensus 1 S~~i~v~nL-p~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~ 79 (91)
T 2lxi_A 1 SNIVMLRML-PQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHY 79 (91)
T ss_dssp CCEEEEETC-CSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEEC
T ss_pred CCEEEEeCC-CCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEE
Confidence 479999999 99999999999999999 8999999987 68999999999999999999987 46689999999999
Q ss_pred cccCCCC
Q 007955 447 YKEKGKV 453 (583)
Q Consensus 447 Ak~K~k~ 453 (583)
+.++.+.
T Consensus 80 a~~~~~~ 86 (91)
T 2lxi_A 80 SDPKPKI 86 (91)
T ss_dssp CCSCCCC
T ss_pred cCCCCCC
Confidence 9887654
No 6
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=4.2e-17 Score=139.33 Aligned_cols=87 Identities=18% Similarity=0.266 Sum_probs=79.9
Q ss_pred CCCCCCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeE
Q 007955 366 AGIVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDAR 441 (583)
Q Consensus 366 ~g~~~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~ 441 (583)
.+......++|||+|| ++.+++++|+++|++||+|++|+|+.| +++|||||+|.+.++|++|++.||++.|+|+.
T Consensus 5 ~~~~~~~~~~l~V~nL-p~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 83 (102)
T 2cqb_A 5 SSGMATTKRVLYVGGL-AEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRT 83 (102)
T ss_dssp SSCSCCCCSCEEEESC-CSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCcCCCCCEEEEeCC-CCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 3455677899999999 999999999999999999999999886 57999999999999999999999999999999
Q ss_pred EEEEecccCCCC
Q 007955 442 VLVKPYKEKGKV 453 (583)
Q Consensus 442 V~Vk~Ak~K~k~ 453 (583)
|.|.+++++...
T Consensus 84 l~V~~a~~~~~~ 95 (102)
T 2cqb_A 84 IRVNLAKPMRIK 95 (102)
T ss_dssp EEEEECCCCCCC
T ss_pred EEEEeCCCCCCC
Confidence 999999887654
No 7
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=4.3e-17 Score=138.79 Aligned_cols=85 Identities=25% Similarity=0.384 Sum_probs=78.0
Q ss_pred CCCCCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEE
Q 007955 367 GIVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARV 442 (583)
Q Consensus 367 g~~~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V 442 (583)
+......++|||+|| ++.+++++|+++|++||+|.+|+|+.| ++||||||+|.+.++|++|++ |+++.|+|+.|
T Consensus 4 ~~~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l 81 (99)
T 2dgs_A 4 GSSGSKSNKIFVGGI-PHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKV 81 (99)
T ss_dssp CCCCSSCCEEEEESC-CSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBC
T ss_pred CCCCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEE
Confidence 445567899999999 999999999999999999999999986 589999999999999999999 89999999999
Q ss_pred EEEecccCCCC
Q 007955 443 LVKPYKEKGKV 453 (583)
Q Consensus 443 ~Vk~Ak~K~k~ 453 (583)
.|.++.++...
T Consensus 82 ~V~~a~~~~~~ 92 (99)
T 2dgs_A 82 EVKRAEPRDSK 92 (99)
T ss_dssp EEEECCCCCCC
T ss_pred EEEECCCCccc
Confidence 99999887654
No 8
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.70 E-value=4.5e-17 Score=134.26 Aligned_cols=80 Identities=20% Similarity=0.321 Sum_probs=74.2
Q ss_pred CCCCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEE
Q 007955 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVL 443 (583)
Q Consensus 368 ~~~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~ 443 (583)
+.....++|||+|| +.++++++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.||+..++|+.|.
T Consensus 2 ~~~~~~~~l~V~nl-~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 80 (85)
T 3mdf_A 2 SMATTKRVLYVGGL-AEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 80 (85)
T ss_dssp -CCCCSSEEEEECC-CTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCEEEEECC-CCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 34567899999999 999999999999999999999999876 5799999999999999999999999999999999
Q ss_pred EEecc
Q 007955 444 VKPYK 448 (583)
Q Consensus 444 Vk~Ak 448 (583)
|.+++
T Consensus 81 v~~ak 85 (85)
T 3mdf_A 81 VNLAK 85 (85)
T ss_dssp EEECC
T ss_pred EEEcC
Confidence 99875
No 9
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=9.2e-17 Score=136.52 Aligned_cols=83 Identities=27% Similarity=0.451 Sum_probs=77.3
Q ss_pred CCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEE
Q 007955 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (583)
Q Consensus 370 ~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk 445 (583)
....++|||+|| ++.+|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.||++.|.|+.|.|.
T Consensus 5 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (99)
T 1whw_A 5 SSGSGRLFVRNL-SYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVL 83 (99)
T ss_dssp CCSCEEEEEECC-CTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 456799999999 999999999999999999999999886 588999999999999999999999999999999999
Q ss_pred ecccCCCC
Q 007955 446 PYKEKGKV 453 (583)
Q Consensus 446 ~Ak~K~k~ 453 (583)
+++++...
T Consensus 84 ~a~~~~~~ 91 (99)
T 1whw_A 84 PSTIKKEA 91 (99)
T ss_dssp ECCCCSTT
T ss_pred EcCCCccc
Confidence 99887653
No 10
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=1.1e-16 Score=134.69 Aligned_cols=82 Identities=17% Similarity=0.242 Sum_probs=76.1
Q ss_pred CCCCCCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeE
Q 007955 366 AGIVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDAR 441 (583)
Q Consensus 366 ~g~~~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~ 441 (583)
.+...+..++|||+|| ++.+++++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.||++.|+|+.
T Consensus 9 ~~~~~~~~~~l~V~nl-p~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 87 (94)
T 2e5h_A 9 SGGLAPSKSTVYVSNL-PFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRV 87 (94)
T ss_dssp CCSCCCCTTSEEEESC-CTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEE
T ss_pred CCCCCCCCCEEEEECC-CCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcE
Confidence 4455677899999999 999999999999999999999999886 57899999999999999999999999999999
Q ss_pred EEEEecc
Q 007955 442 VLVKPYK 448 (583)
Q Consensus 442 V~Vk~Ak 448 (583)
|.|.+|+
T Consensus 88 l~v~~ak 94 (94)
T 2e5h_A 88 IKASIAI 94 (94)
T ss_dssp EEEEECC
T ss_pred EEEEecC
Confidence 9999875
No 11
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=6.3e-17 Score=138.25 Aligned_cols=86 Identities=20% Similarity=0.248 Sum_probs=79.2
Q ss_pred CCCCCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEE
Q 007955 367 GIVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARV 442 (583)
Q Consensus 367 g~~~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V 442 (583)
+......++|||+|| ++.+++++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.||++.|+|+.|
T Consensus 6 ~~~~~~~~~l~v~nL-p~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 84 (102)
T 1x5s_A 6 SGMASDEGKLFVGGL-SFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQI 84 (102)
T ss_dssp CCCCCCCSEEEEESC-CTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCC
T ss_pred CCCCCCCCEEEEECC-CCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 345667899999999 999999999999999999999999986 579999999999999999999999999999999
Q ss_pred EEEecccCCCC
Q 007955 443 LVKPYKEKGKV 453 (583)
Q Consensus 443 ~Vk~Ak~K~k~ 453 (583)
.|.+++++...
T Consensus 85 ~v~~a~~~~~~ 95 (102)
T 1x5s_A 85 RVDQAGKSSDN 95 (102)
T ss_dssp EEEEEECCCCC
T ss_pred EEEECCCCCCC
Confidence 99999877653
No 12
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.69 E-value=6.9e-17 Score=133.71 Aligned_cols=79 Identities=11% Similarity=0.245 Sum_probs=72.2
Q ss_pred CCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 007955 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (583)
Q Consensus 371 ~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~ 446 (583)
...++|||+|| +..+++++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.||++.++|+.|.|.+
T Consensus 4 ~~~~~l~v~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (87)
T 3bs9_A 4 GSHFHVFVGDL-SPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 82 (87)
T ss_dssp --CEEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCceEEEEeCC-CCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 35789999999 999999999999999999999999886 4789999999999999999999999999999999999
Q ss_pred cccC
Q 007955 447 YKEK 450 (583)
Q Consensus 447 Ak~K 450 (583)
++++
T Consensus 83 a~~k 86 (87)
T 3bs9_A 83 ATRK 86 (87)
T ss_dssp EC--
T ss_pred cCCC
Confidence 9875
No 13
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.69 E-value=9.2e-17 Score=131.84 Aligned_cols=78 Identities=10% Similarity=0.165 Sum_probs=73.5
Q ss_pred CcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEecc
Q 007955 373 SRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (583)
Q Consensus 373 ~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~Ak 448 (583)
+.+|||+|| +.++++++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.||+..++|+.|.|.+++
T Consensus 1 t~~l~V~nl-p~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 79 (83)
T 3md1_A 1 TFNLFVGDL-NVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 79 (83)
T ss_dssp CEEEEEECC-CTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CeEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecC
Confidence 368999999 999999999999999999999999876 569999999999999999999999999999999999998
Q ss_pred cCC
Q 007955 449 EKG 451 (583)
Q Consensus 449 ~K~ 451 (583)
++.
T Consensus 80 ~~~ 82 (83)
T 3md1_A 80 KLE 82 (83)
T ss_dssp CCC
T ss_pred cCC
Confidence 765
No 14
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2.1e-16 Score=135.52 Aligned_cols=84 Identities=20% Similarity=0.314 Sum_probs=78.0
Q ss_pred CCCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc--CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 007955 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ--QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (583)
Q Consensus 369 ~~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D--ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~ 446 (583)
.....++|||+|| ++.+|+++|+++|++||+|.+|+|+.+ .++|||||+|.+.++|++|++.||++.|+|+.|.|.+
T Consensus 11 ~~~~~~~l~V~nl-p~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 11 SKSTPKRLHVSNI-PFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp CSCCCCEEEEESC-CTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456799999999 999999999999999999999999987 5799999999999999999999999999999999999
Q ss_pred cccCCCC
Q 007955 447 YKEKGKV 453 (583)
Q Consensus 447 Ak~K~k~ 453 (583)
+.++...
T Consensus 90 a~~~~~~ 96 (103)
T 2cq3_A 90 ATARVMT 96 (103)
T ss_dssp CCSSCCC
T ss_pred cccCCCC
Confidence 9887654
No 15
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2.4e-16 Score=135.08 Aligned_cols=83 Identities=18% Similarity=0.198 Sum_probs=77.1
Q ss_pred CCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc--CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEec
Q 007955 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ--QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (583)
Q Consensus 370 ~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D--ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~A 447 (583)
....++|||+|| ++.+++++|+++|++||+|.+|+|+.+ .+||||||+|.+.++|++|++.||++.|.|+.|.|.++
T Consensus 12 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2cqi_A 12 DGQPRTLYVGNL-SRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA 90 (103)
T ss_dssp SCCCCEEEEESC-CTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCC-CccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEEC
Confidence 456799999999 999999999999999999999999987 57899999999999999999999999999999999999
Q ss_pred ccCCCC
Q 007955 448 KEKGKV 453 (583)
Q Consensus 448 k~K~k~ 453 (583)
+++...
T Consensus 91 ~~~~~~ 96 (103)
T 2cqi_A 91 TTPSSQ 96 (103)
T ss_dssp CCTTCC
T ss_pred CCCccc
Confidence 876543
No 16
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.9e-16 Score=134.94 Aligned_cols=81 Identities=10% Similarity=0.087 Sum_probs=75.1
Q ss_pred CCCcEEEEeCCCCCCCCHHHHH----HHHhhcCCceeEEEeccC-CCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEE
Q 007955 371 PASRQIYLTFPADSTFREEDVS----NYFSIYGPVQDVRIPYQQ-KRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (583)
Q Consensus 371 ~~~rtIYVgnL~~~~~tEedLr----e~FsqFG~V~~VrI~~Dk-sRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk 445 (583)
...++|||+|| ++.+++++|+ ++|++||+|.+|+|+.|+ .||||||+|.+.++|++|++.||+..|+|+.|.|.
T Consensus 7 ~~~~~l~V~nL-~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~ 85 (96)
T 2dgx_A 7 GNGADVQVSNI-DYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVS 85 (96)
T ss_dssp SSCEEEEEESC-CTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCEEEEECC-CCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 45689999999 9999999999 999999999999999872 39999999999999999999999999999999999
Q ss_pred ecccCCC
Q 007955 446 PYKEKGK 452 (583)
Q Consensus 446 ~Ak~K~k 452 (583)
+++++..
T Consensus 86 ~a~~~~~ 92 (96)
T 2dgx_A 86 LATGASG 92 (96)
T ss_dssp ECCCSSC
T ss_pred EcCCCCC
Confidence 9987654
No 17
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.68 E-value=7.2e-17 Score=139.28 Aligned_cols=81 Identities=17% Similarity=0.121 Sum_probs=72.8
Q ss_pred CCCCCCcEEEEeCCCCCCCCHHHHHHHHhhcCC--ceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCe----EE
Q 007955 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGP--VQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPH----FV 437 (583)
Q Consensus 368 ~~~~~~rtIYVgnL~~~~~tEedLre~FsqFG~--V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~----~L 437 (583)
.....-.||||+|| ++.+|+++|+++|++||. |.+|+|++| ++||||||+|.+.++|++|++.||+. .|
T Consensus 4 ~~~~~m~tlfV~nL-~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i 82 (95)
T 2lkz_A 4 HHHHHMDTIILRNI-APHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKI 82 (95)
T ss_dssp CSSCCCCEEEEESC-CTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEE
T ss_pred ccCCccCEEEEeCC-CCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceE
Confidence 33455689999999 999999999999999995 779999987 68999999999999999999999875 69
Q ss_pred cCeEEEEEeccc
Q 007955 438 CDARVLVKPYKE 449 (583)
Q Consensus 438 ~GR~V~Vk~Ak~ 449 (583)
+||+|.|.+|+.
T Consensus 83 ~Gr~i~V~~Aks 94 (95)
T 2lkz_A 83 DGKTIGVDFAKS 94 (95)
T ss_dssp TTEEEEEEECCC
T ss_pred CCEEEEEEEccC
Confidence 999999999874
No 18
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.68 E-value=1.4e-16 Score=131.97 Aligned_cols=79 Identities=11% Similarity=0.261 Sum_probs=74.3
Q ss_pred CCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEeccC-----CCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 007955 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQ-----KRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (583)
Q Consensus 372 ~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~Dk-----sRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~ 446 (583)
..++|||+|| ++++|+++|+++|++||+|.+|+|+.++ ++|||||+|.+.++|++|++.||+..++|+.|.|.+
T Consensus 3 ~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 3 KPTKVHIGRL-TRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCEEEEECC-CTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCEEEEeCC-CCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 4689999999 9999999999999999999999998873 899999999999999999999999999999999999
Q ss_pred cccCC
Q 007955 447 YKEKG 451 (583)
Q Consensus 447 Ak~K~ 451 (583)
+.+..
T Consensus 82 a~~~~ 86 (88)
T 4a8x_A 82 VLAPW 86 (88)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 97654
No 19
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.6e-16 Score=134.08 Aligned_cols=82 Identities=17% Similarity=0.318 Sum_probs=76.5
Q ss_pred CCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeE-EEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEE
Q 007955 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDV-RIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (583)
Q Consensus 371 ~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~V-rI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk 445 (583)
...++|||+|| ++.+++++|+++|++||+|.+| +|+.| +++|||||+|.+.++|++|++.||++.|.|+.|.|.
T Consensus 3 ~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 81 (96)
T 1x5t_A 3 SGSSGIFIGNL-DPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVS 81 (96)
T ss_dssp SCCCEEEEECC-CTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34789999999 9999999999999999999999 99886 579999999999999999999999999999999999
Q ss_pred ecccCCCC
Q 007955 446 PYKEKGKV 453 (583)
Q Consensus 446 ~Ak~K~k~ 453 (583)
++.++...
T Consensus 82 ~a~~~~~~ 89 (96)
T 1x5t_A 82 YAFKKDSK 89 (96)
T ss_dssp ESCCCCCC
T ss_pred EecccCCC
Confidence 99887654
No 20
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.67 E-value=2.4e-16 Score=137.65 Aligned_cols=84 Identities=14% Similarity=0.286 Sum_probs=77.8
Q ss_pred CCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEE
Q 007955 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (583)
Q Consensus 370 ~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk 445 (583)
....++|||+|| ++.+++++|+++|++||.|.+|+|+.+ +++|||||+|.+.++|++|++.||++.|+|+.|.|.
T Consensus 12 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 12 TSNHFHVFVGDL-SPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp STTCEEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCcEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 356789999999 999999999999999999999999986 468999999999999999999999999999999999
Q ss_pred ecccCCCCc
Q 007955 446 PYKEKGKVP 454 (583)
Q Consensus 446 ~Ak~K~k~~ 454 (583)
+++++....
T Consensus 91 ~a~~~~~~~ 99 (115)
T 2dgo_A 91 WATRKPPAP 99 (115)
T ss_dssp ESSCCCCCS
T ss_pred EccCCCCCC
Confidence 998876643
No 21
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.9e-16 Score=135.89 Aligned_cols=84 Identities=19% Similarity=0.245 Sum_probs=77.8
Q ss_pred CCCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEE
Q 007955 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (583)
Q Consensus 369 ~~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~V 444 (583)
.....++|||+|| ++.+++++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.|+++.|+|+.|.|
T Consensus 11 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 11 ERNQDATVYVGGL-DEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCTTTEEEEECC-CTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred cCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 3456799999999 999999999999999999999999886 58999999999999999999999999999999999
Q ss_pred EecccCCCC
Q 007955 445 KPYKEKGKV 453 (583)
Q Consensus 445 k~Ak~K~k~ 453 (583)
.++.++.+.
T Consensus 90 ~~a~~~~~~ 98 (105)
T 1x5u_A 90 NKASAHNKN 98 (105)
T ss_dssp EETTTTSCC
T ss_pred EECCCCCcC
Confidence 999887654
No 22
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.4e-16 Score=136.67 Aligned_cols=83 Identities=18% Similarity=0.242 Sum_probs=77.1
Q ss_pred CCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc-CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEecc
Q 007955 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ-QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (583)
Q Consensus 370 ~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D-ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~Ak 448 (583)
....++|||+|| ++.+|+++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.||++.|+|+.|.|.+++
T Consensus 19 ~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 97 (109)
T 1x4a_A 19 GNNDCRIYVGNL-PPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR 97 (109)
T ss_dssp CCCSSEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcc
Confidence 456789999999 999999999999999999999999887 579999999999999999999999999999999999998
Q ss_pred cCCCC
Q 007955 449 EKGKV 453 (583)
Q Consensus 449 ~K~k~ 453 (583)
++.+.
T Consensus 98 ~~~~~ 102 (109)
T 1x4a_A 98 SGRGT 102 (109)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 76653
No 23
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=9.4e-17 Score=141.91 Aligned_cols=82 Identities=12% Similarity=0.083 Sum_probs=74.9
Q ss_pred CCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEeccCCCceEEEEECCHHHHHHHHHhCC--CeEEcCeEEEEEec
Q 007955 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGN--PHFVCDARVLVKPY 447 (583)
Q Consensus 370 ~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~mn--g~~L~GR~V~Vk~A 447 (583)
.+..++|||+|| ++++||++|+++|++||+|++|+|++ .||||||+|.+.++|++|++.++ +..|+|++|.|.++
T Consensus 13 ~~~~~~LfV~nL-p~~vte~dL~~lF~~fG~V~~v~i~~--~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A 89 (105)
T 1sjq_A 13 GVPSRVIHIRKL-PIDVTEGEVISLGLPFGKVTNLLMLK--GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 89 (105)
T ss_dssp CCCCCEEEECSC-CTTSCHHHHHHHHHHHCCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCC
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEc--CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 356799999999 99999999999999999999999998 48999999999999999999765 58999999999999
Q ss_pred ccCCCCc
Q 007955 448 KEKGKVP 454 (583)
Q Consensus 448 k~K~k~~ 454 (583)
+++....
T Consensus 90 ~~~~~~~ 96 (105)
T 1sjq_A 90 NHKELKT 96 (105)
T ss_dssp SSSSCCC
T ss_pred CCCCCCc
Confidence 8876654
No 24
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.67 E-value=1.7e-16 Score=136.45 Aligned_cols=76 Identities=8% Similarity=0.054 Sum_probs=72.5
Q ss_pred CCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEecc
Q 007955 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (583)
Q Consensus 370 ~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~Ak 448 (583)
...+.-|||||| ++.+||++|+++|.+||+|.+|+|+. +||||||+|.++++|++|++.||+..|.||.|+|+.|.
T Consensus 4 ~~~~~wL~VgNL-~~~~te~~L~~lF~q~G~V~~~~l~~--~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 4 AWGSSWLLLKNL-TAQIDGPTLRTLCMQHGPLVSFHPYL--NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCCCEEEEECC-CTTCCCHHHHHHHHHHSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred CCccceEEEeCC-CccCCHHHHHHHHHhhCCEEEEEEcC--CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 456789999999 99999999999999999999999988 89999999999999999999999999999999999993
No 25
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=2.5e-16 Score=134.25 Aligned_cols=82 Identities=10% Similarity=0.153 Sum_probs=76.6
Q ss_pred CCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 007955 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (583)
Q Consensus 370 ~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D---ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~ 446 (583)
....++|||+|| ++.+|+++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.||++.|+|+.|.|.+
T Consensus 14 ~~~~~~l~v~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 14 SLEKHKLFISGL-PFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp CCCCSCEEEESC-CTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 356789999999 999999999999999999999999986 5789999999999999999999999999999999999
Q ss_pred cccCCC
Q 007955 447 YKEKGK 452 (583)
Q Consensus 447 Ak~K~k 452 (583)
++++..
T Consensus 93 a~~~~~ 98 (100)
T 2do4_A 93 SNSGPS 98 (100)
T ss_dssp CCCCSC
T ss_pred CCCCCC
Confidence 988765
No 26
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=1.7e-16 Score=133.62 Aligned_cols=82 Identities=17% Similarity=0.262 Sum_probs=76.5
Q ss_pred CCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 007955 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (583)
Q Consensus 371 ~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~ 446 (583)
+..++|||+|| +..+++++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.||++.|.|+.|.|.+
T Consensus 3 ~~~~~l~v~nl-p~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 3 SGSSGLYVGSL-HFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp SCCCEEEEESC-CTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCcEEEEeCC-CCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 45789999999 999999999999999999999999986 5799999999999999999999999999999999999
Q ss_pred cccCCCC
Q 007955 447 YKEKGKV 453 (583)
Q Consensus 447 Ak~K~k~ 453 (583)
+.++...
T Consensus 82 a~~~~~~ 88 (95)
T 2dnz_A 82 VTERLDG 88 (95)
T ss_dssp SSCCCCC
T ss_pred cccccCC
Confidence 9877653
No 27
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.67 E-value=2.2e-16 Score=140.17 Aligned_cols=81 Identities=10% Similarity=-0.042 Sum_probs=74.4
Q ss_pred CCCCcEEEEeCCCCCCCCHHHHHHHHhhcC-CceeEEEeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEecc
Q 007955 370 NPASRQIYLTFPADSTFREEDVSNYFSIYG-PVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (583)
Q Consensus 370 ~~~~rtIYVgnL~~~~~tEedLre~FsqFG-~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~Ak 448 (583)
.+...+|||+|| ++++++++|+++|++|| +|..|+|+.+++||||||+|.+.++|++|++.||+..|+|+.|.|.++.
T Consensus 25 p~~~~~l~VgnL-p~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~ 103 (111)
T 2jvr_A 25 PAKRYRITMKNL-PEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDD 103 (111)
T ss_dssp CCCCEEEEEECS-SCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESC
T ss_pred CCCCCEEEEECC-CCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 355689999999 99999999999999999 9999999877799999999999999999999999999999999999987
Q ss_pred cCC
Q 007955 449 EKG 451 (583)
Q Consensus 449 ~K~ 451 (583)
...
T Consensus 104 ~~p 106 (111)
T 2jvr_A 104 NPP 106 (111)
T ss_dssp C--
T ss_pred CCC
Confidence 543
No 28
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=1.4e-16 Score=136.59 Aligned_cols=84 Identities=18% Similarity=0.125 Sum_probs=77.3
Q ss_pred CCCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEE
Q 007955 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (583)
Q Consensus 369 ~~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~V 444 (583)
.....++|||+|| ++.+++++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.||++.|+|+.|.|
T Consensus 9 ~~~~~~~l~V~nL-p~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2dnm_A 9 DVDGMITLKVDNL-TYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRV 87 (103)
T ss_dssp CCSCCCEEEEESC-CTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEE
T ss_pred CCCCCeEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 3455799999999 999999999999999999999999886 57999999999999999999999999999999999
Q ss_pred EecccCCCC
Q 007955 445 KPYKEKGKV 453 (583)
Q Consensus 445 k~Ak~K~k~ 453 (583)
.+++++...
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2dnm_A 88 QVARYGRRD 96 (103)
T ss_dssp EECSSCCSC
T ss_pred EECCcCCCC
Confidence 999876554
No 29
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.3e-16 Score=135.16 Aligned_cols=83 Identities=18% Similarity=0.184 Sum_probs=77.1
Q ss_pred CCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEE
Q 007955 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (583)
Q Consensus 370 ~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk 445 (583)
....++|||+|| ++.+++++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.||++.|.|+.|.|.
T Consensus 12 ~~~~~~l~V~nl-p~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 12 ADDNATIRVTNL-SEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CSSSEEEEEESC-CTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 355799999999 999999999999999999999999886 578999999999999999999999999999999999
Q ss_pred ecccCCCC
Q 007955 446 PYKEKGKV 453 (583)
Q Consensus 446 ~Ak~K~k~ 453 (583)
+++++...
T Consensus 91 ~a~~~~~~ 98 (103)
T 2cq0_A 91 WAKPSTNS 98 (103)
T ss_dssp ESSCCCCS
T ss_pred ECCCCCCC
Confidence 99887654
No 30
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.67 E-value=1.9e-16 Score=138.57 Aligned_cols=83 Identities=18% Similarity=0.360 Sum_probs=77.0
Q ss_pred CCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEE
Q 007955 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (583)
Q Consensus 370 ~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk 445 (583)
.+..++|||+|| ++.+++++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.||+..|+|+.|.|.
T Consensus 22 ~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 100 (115)
T 2cpz_A 22 GPEGANLFIYHL-PQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQ 100 (115)
T ss_dssp CSTTCCEEEESC-CSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCcEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 356789999999 999999999999999999999999886 578999999999999999999999999999999999
Q ss_pred ecccCCCC
Q 007955 446 PYKEKGKV 453 (583)
Q Consensus 446 ~Ak~K~k~ 453 (583)
+++++...
T Consensus 101 ~a~~~~~~ 108 (115)
T 2cpz_A 101 LKRSKNDS 108 (115)
T ss_dssp CCCCSCCC
T ss_pred EcCCCCcC
Confidence 99887654
No 31
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.2e-16 Score=137.85 Aligned_cols=82 Identities=21% Similarity=0.319 Sum_probs=76.4
Q ss_pred CCCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc--CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 007955 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ--QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (583)
Q Consensus 369 ~~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D--ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~ 446 (583)
.....++|||+|| +..+++++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.||++.|+|+.|.|.+
T Consensus 25 ~~~~~~~l~V~nL-p~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 25 NKSQPKRLHVSNI-PFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp CTTCCCEEEEESC-CTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCEEEEECC-CCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3456799999999 999999999999999999999999987 5799999999999999999999999999999999999
Q ss_pred cccCC
Q 007955 447 YKEKG 451 (583)
Q Consensus 447 Ak~K~ 451 (583)
++++.
T Consensus 104 a~~~~ 108 (109)
T 2err_A 104 ATARV 108 (109)
T ss_dssp CCCSC
T ss_pred CCCCc
Confidence 98763
No 32
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.66 E-value=2.5e-16 Score=133.56 Aligned_cols=82 Identities=17% Similarity=0.172 Sum_probs=76.6
Q ss_pred CcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEecc
Q 007955 373 SRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (583)
Q Consensus 373 ~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~Ak 448 (583)
+++|||+|| +..+++++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.||+..|+|+.|.|.++.
T Consensus 2 ~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 2 SRVVYLGSI-PYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CSEEEEESC-CTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CcEEEEECC-CCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 589999999 999999999999999999999999886 569999999999999999999999999999999999999
Q ss_pred cCCCCch
Q 007955 449 EKGKVPD 455 (583)
Q Consensus 449 ~K~k~~~ 455 (583)
++.....
T Consensus 81 ~~~~~~~ 87 (96)
T 2x1f_A 81 NSDISGV 87 (96)
T ss_dssp CSSGGGH
T ss_pred CCCCCCc
Confidence 8776543
No 33
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=3.3e-16 Score=135.48 Aligned_cols=83 Identities=13% Similarity=0.207 Sum_probs=77.2
Q ss_pred CCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCC------CeEEcC
Q 007955 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGN------PHFVCD 439 (583)
Q Consensus 370 ~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mn------g~~L~G 439 (583)
....++|||+|| ++.+|+++|+++|++||+|.+|+|+.| +++|||||+|.+.++|++|++.|| ++.|+|
T Consensus 12 ~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 12 VTEGKTVFIRNL-SFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCEEEESC-CTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred CCCCCEEEEECC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 355789999999 999999999999999999999999987 579999999999999999999999 999999
Q ss_pred eEEEEEecccCCCC
Q 007955 440 ARVLVKPYKEKGKV 453 (583)
Q Consensus 440 R~V~Vk~Ak~K~k~ 453 (583)
+.|.|.++.++...
T Consensus 91 ~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 91 RQLKVDLAVTRDEA 104 (111)
T ss_dssp CEEEEECCCCCCCC
T ss_pred EEEEEEECCCCccC
Confidence 99999999887654
No 34
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.7e-16 Score=136.47 Aligned_cols=82 Identities=13% Similarity=0.204 Sum_probs=76.1
Q ss_pred CCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEE
Q 007955 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (583)
Q Consensus 370 ~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk 445 (583)
....++|||+|| ++.+++++|+++|++||+|.+|+|+.| +++|||||+|.+.++|++|++.||++.|.|+.|.|.
T Consensus 20 ~~~~~~l~V~nl-p~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 20 SVEGWILFVTGV-HEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 98 (106)
T ss_dssp BTTBEEEEEECC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 345789999999 999999999999999999999999886 568999999999999999999999999999999999
Q ss_pred ecccCCC
Q 007955 446 PYKEKGK 452 (583)
Q Consensus 446 ~Ak~K~k 452 (583)
++.++..
T Consensus 99 ~a~~~~~ 105 (106)
T 1p27_B 99 WCFVRGP 105 (106)
T ss_dssp ESEESSC
T ss_pred eecCCCC
Confidence 9988754
No 35
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=1.5e-16 Score=135.42 Aligned_cols=82 Identities=13% Similarity=0.167 Sum_probs=76.2
Q ss_pred CCCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEecc
Q 007955 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (583)
Q Consensus 369 ~~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~Ak 448 (583)
.....++|||+|| ++.+|+++|+++|++||.|. ++|+.++++|||||+|.+.++|++|++.||+..|+|+.|.|.+++
T Consensus 15 ~~~~~~~l~V~nL-~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 92 (97)
T 2e5j_A 15 GAPLAADVYVGNL-PRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALAR 92 (97)
T ss_dssp SSCCCCEEEEECC-CTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECC
T ss_pred CCCCCCEEEEeCC-CCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 3456789999999 99999999999999999997 788888899999999999999999999999999999999999998
Q ss_pred cCCC
Q 007955 449 EKGK 452 (583)
Q Consensus 449 ~K~k 452 (583)
++.+
T Consensus 93 ~~~~ 96 (97)
T 2e5j_A 93 QQRD 96 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8754
No 36
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.66 E-value=3.3e-16 Score=135.72 Aligned_cols=83 Identities=12% Similarity=0.178 Sum_probs=76.9
Q ss_pred CCCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEE
Q 007955 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (583)
Q Consensus 369 ~~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~V 444 (583)
.....++|||+|| ++.+|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.||++.|+|+.|.|
T Consensus 22 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 100 (110)
T 1oo0_B 22 RSVEGWILFVTSI-HEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQV 100 (110)
T ss_dssp CBTTBEEEEEESC-CTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 3456789999999 999999999999999999999999876 57999999999999999999999999999999999
Q ss_pred EecccCCC
Q 007955 445 KPYKEKGK 452 (583)
Q Consensus 445 k~Ak~K~k 452 (583)
.++.++..
T Consensus 101 ~~a~~~~~ 108 (110)
T 1oo0_B 101 DWCFVKGP 108 (110)
T ss_dssp EESEESSC
T ss_pred EEcccCCC
Confidence 99988764
No 37
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=5.5e-16 Score=130.00 Aligned_cols=83 Identities=20% Similarity=0.203 Sum_probs=76.2
Q ss_pred CCCCCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEE
Q 007955 367 GIVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVL 443 (583)
Q Consensus 367 g~~~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D---ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~ 443 (583)
+......++|||+|| ++++++++|+++|++| .|.+|+|+++ +++|||||+|.+.++|++|++ ||+..|.|+.|.
T Consensus 4 ~~~~~~~~~l~v~nL-p~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~ 80 (91)
T 2dgw_A 4 GSSGTTCHTVKLRGA-PFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIE 80 (91)
T ss_dssp CCCCCCCCEEEEECC-CSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEE
T ss_pred CCCCCCccEEEEECC-CCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEE
Confidence 344566899999999 9999999999999999 9999999986 679999999999999999999 999999999999
Q ss_pred EEecccCCC
Q 007955 444 VKPYKEKGK 452 (583)
Q Consensus 444 Vk~Ak~K~k 452 (583)
|.++.++.+
T Consensus 81 v~~a~~~~~ 89 (91)
T 2dgw_A 81 VFREKSGPS 89 (91)
T ss_dssp EEEESSCCC
T ss_pred EEECCcCCC
Confidence 999987754
No 38
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.66 E-value=2.6e-16 Score=135.36 Aligned_cols=85 Identities=12% Similarity=0.232 Sum_probs=77.5
Q ss_pred CCCCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEE---cCe
Q 007955 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFV---CDA 440 (583)
Q Consensus 368 ~~~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L---~GR 440 (583)
......++|||+|| +..+++++|+++|++||+|.+|+|+.| ++||||||+|.+.++|++|++.||+..+ .|+
T Consensus 8 ~~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~ 86 (106)
T 2dgp_A 8 MKDHDAIKLFIGQI-PRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNR 86 (106)
T ss_dssp CCCTTCEEEEEESC-CTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSS
T ss_pred CCCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCc
Confidence 34466899999999 999999999999999999999999986 5799999999999999999999999988 899
Q ss_pred EEEEEecccCCCC
Q 007955 441 RVLVKPYKEKGKV 453 (583)
Q Consensus 441 ~V~Vk~Ak~K~k~ 453 (583)
.|.|.++.++...
T Consensus 87 ~l~v~~a~~~~~~ 99 (106)
T 2dgp_A 87 PIQVKPADSESRG 99 (106)
T ss_dssp CCEEEECCCCSCC
T ss_pred eEEEEECCccccc
Confidence 9999999876643
No 39
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.66 E-value=2.2e-16 Score=133.01 Aligned_cols=79 Identities=27% Similarity=0.349 Sum_probs=73.9
Q ss_pred CCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 007955 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (583)
Q Consensus 370 ~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D---ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~ 446 (583)
....++|||+|| ++.+++++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.||++.|+|+.|.|.+
T Consensus 13 ~~~~~~l~v~nl-p~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 13 EEADRTVFVGNL-EARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp TTGGGEEEEECC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEECC-CCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 456799999999 999999999999999999999999986 5789999999999999999999999999999999998
Q ss_pred ccc
Q 007955 447 YKE 449 (583)
Q Consensus 447 Ak~ 449 (583)
++.
T Consensus 92 a~~ 94 (95)
T 2ywk_A 92 PSS 94 (95)
T ss_dssp CCC
T ss_pred cCC
Confidence 863
No 40
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=3.4e-16 Score=132.75 Aligned_cols=82 Identities=22% Similarity=0.295 Sum_probs=75.6
Q ss_pred CCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc-------CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEE
Q 007955 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ-------QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVL 443 (583)
Q Consensus 371 ~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D-------ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~ 443 (583)
...++|||+|| ++.+++++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.||++.|+|+.|.
T Consensus 3 ~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (98)
T 2cpf_A 3 SGSSGLFIKNL-NFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLE 81 (98)
T ss_dssp CCCCCEEEESC-CTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 45789999999 999999999999999999999999864 4689999999999999999999999999999999
Q ss_pred EEecccCCCC
Q 007955 444 VKPYKEKGKV 453 (583)
Q Consensus 444 Vk~Ak~K~k~ 453 (583)
|.++.++...
T Consensus 82 V~~a~~~~~~ 91 (98)
T 2cpf_A 82 VRISERATKP 91 (98)
T ss_dssp EECSSCSSCC
T ss_pred EEEccCCCCC
Confidence 9999876653
No 41
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=4.7e-16 Score=128.38 Aligned_cols=77 Identities=19% Similarity=0.312 Sum_probs=72.5
Q ss_pred CCCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEeccCCCceEEEEECCHHHHHHHHHhC-CCeEEcCeEEEEEec
Q 007955 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKG-NPHFVCDARVLVKPY 447 (583)
Q Consensus 369 ~~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~m-ng~~L~GR~V~Vk~A 447 (583)
.....++|||+|| +..+++++|+++|++||+|.+|+|+. +||||||+|.+.++|++|++.| ++..++|+.|.|.++
T Consensus 8 ~~~~~~~l~V~~l-~~~~t~~~l~~~f~~~G~i~~~~~~~--~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~a 84 (85)
T 2ytc_A 8 EDKTITTLYVGGL-GDTITETDLRNHFYQFGEIRTITVVQ--RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWG 84 (85)
T ss_dssp SCSSCCCEEEECC-TTTSCHHHHHHHHHTTSCEEEEEEEG--GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEEC
T ss_pred CCCCccEEEEcCC-CCCCCHHHHHHHHHhCCCEeEEEEEC--CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEec
Confidence 3466799999999 99999999999999999999999998 7999999999999999999999 999999999999987
Q ss_pred c
Q 007955 448 K 448 (583)
Q Consensus 448 k 448 (583)
+
T Consensus 85 k 85 (85)
T 2ytc_A 85 R 85 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 42
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.66 E-value=1.7e-16 Score=132.91 Aligned_cols=83 Identities=17% Similarity=0.152 Sum_probs=76.9
Q ss_pred CCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc--CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEec
Q 007955 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ--QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (583)
Q Consensus 370 ~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D--ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~A 447 (583)
....++|||+|| ++.+++++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.|+++.|+|+.|.|.++
T Consensus 5 ~~~~~~l~V~nl-p~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 5 SSGACQIFVRNL-PFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSSCCEEEECSC-CTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCCcEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 456789999999 999999999999999999999999876 68999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 007955 448 KEKGKV 453 (583)
Q Consensus 448 k~K~k~ 453 (583)
+++...
T Consensus 84 ~~~~~~ 89 (92)
T 2dgv_A 84 RNASGP 89 (92)
T ss_dssp SCCSSC
T ss_pred CCCCCC
Confidence 876543
No 43
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=4.1e-16 Score=131.09 Aligned_cols=79 Identities=25% Similarity=0.276 Sum_probs=73.9
Q ss_pred CCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEE
Q 007955 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (583)
Q Consensus 370 ~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk 445 (583)
....++|||+|| ++.+++++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.||+..|+|+.|.|.
T Consensus 12 ~~~~~~l~v~nl-p~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (95)
T 2cqc_A 12 PDPNCCLGVFGL-SLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVS 90 (95)
T ss_dssp CCGGGCEEEESC-CSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCEEEEECC-CCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 456789999999 999999999999999999999999876 578999999999999999999999999999999999
Q ss_pred eccc
Q 007955 446 PYKE 449 (583)
Q Consensus 446 ~Ak~ 449 (583)
+++.
T Consensus 91 ~a~~ 94 (95)
T 2cqc_A 91 GPSS 94 (95)
T ss_dssp CCSC
T ss_pred ecCC
Confidence 9864
No 44
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=1e-15 Score=133.08 Aligned_cols=80 Identities=15% Similarity=0.066 Sum_probs=74.9
Q ss_pred CCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEeccCCCceEEEEECCHHHHHHHHHhCCCeEEcC-----eEEEE
Q 007955 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCD-----ARVLV 444 (583)
Q Consensus 370 ~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~mng~~L~G-----R~V~V 444 (583)
....++|||+|| ++++|+++|+++|++||+|.+|+|+.| |||||+|.+.++|++|++.||++.|.| +.|.|
T Consensus 12 ~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V 87 (108)
T 1x4c_A 12 RRSENRVVVSGL-PPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV 87 (108)
T ss_dssp CSCCCEEEEESC-CSSCCHHHHHHHHGGGSCEEEEEEETT---TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEeEEEEecC---CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEE
Confidence 355789999999 999999999999999999999999986 999999999999999999999999999 99999
Q ss_pred EecccCCCC
Q 007955 445 KPYKEKGKV 453 (583)
Q Consensus 445 k~Ak~K~k~ 453 (583)
.++.++...
T Consensus 88 ~~a~~~~~~ 96 (108)
T 1x4c_A 88 KVDGPRSPS 96 (108)
T ss_dssp EESSCCSCC
T ss_pred EeCCCCCCC
Confidence 999987654
No 45
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.65 E-value=5.3e-17 Score=136.58 Aligned_cols=79 Identities=13% Similarity=0.123 Sum_probs=68.0
Q ss_pred cEEEEeCCCCCCCCHHHHHHHHhhcC--CceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEec
Q 007955 374 RQIYLTFPADSTFREEDVSNYFSIYG--PVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (583)
Q Consensus 374 rtIYVgnL~~~~~tEedLre~FsqFG--~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~A 447 (583)
.+|||+|| ++++|+++|+++|++|| +|.+|+|+.| ++||||||+|.+.++|++|++.||+..|+|+.|.|.++
T Consensus 2 ~~l~V~nL-~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~ 80 (90)
T 3p5t_L 2 IALYIGNL-TWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPS 80 (90)
T ss_dssp --CEEESC-CTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC
T ss_pred eEEEEeCC-CCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEEC
Confidence 48999999 99999999999999999 9999999987 68999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 007955 448 KEKGKV 453 (583)
Q Consensus 448 k~K~k~ 453 (583)
.+....
T Consensus 81 ~~~~~~ 86 (90)
T 3p5t_L 81 NKLEHH 86 (90)
T ss_dssp ------
T ss_pred CCCccc
Confidence 876543
No 46
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=3.2e-16 Score=133.17 Aligned_cols=82 Identities=18% Similarity=0.148 Sum_probs=75.8
Q ss_pred CCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCce-eEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeE---
Q 007955 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQ-DVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDAR--- 441 (583)
Q Consensus 370 ~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~-~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~--- 441 (583)
....++|||+|| ++.+++++|+++|++||+|. +|+|+.| +++|||||+|.+.++|++|++.||+..|.|+.
T Consensus 6 ~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 6 SGMAASLWMGDL-EPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CSSSSEEEECSC-CTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCccEEEEeCC-CCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 456799999999 99999999999999999999 9999987 57899999999999999999999999999999
Q ss_pred -EEEEecccCCC
Q 007955 442 -VLVKPYKEKGK 452 (583)
Q Consensus 442 -V~Vk~Ak~K~k 452 (583)
|+|.++++...
T Consensus 85 ~l~v~~a~~~~~ 96 (99)
T 2div_A 85 RFKLNYATYSGP 96 (99)
T ss_dssp ECCEEETTCCSS
T ss_pred eEEEeecCCCCC
Confidence 99999986543
No 47
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.65 E-value=3.3e-16 Score=134.48 Aligned_cols=83 Identities=14% Similarity=0.222 Sum_probs=76.9
Q ss_pred CCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcC---eEEE
Q 007955 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCD---ARVL 443 (583)
Q Consensus 370 ~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D---ksRGfAFVtF~~~e~A~~Al~~mng~~L~G---R~V~ 443 (583)
....++|||+|| ++.+++++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.||+..+.| +.|.
T Consensus 12 ~~~~~~l~v~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 12 GGRDRKLFVGML-NKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp CCCCCEEEEESC-CTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 356899999999 999999999999999999999999987 568999999999999999999999999998 9999
Q ss_pred EEecccCCCC
Q 007955 444 VKPYKEKGKV 453 (583)
Q Consensus 444 Vk~Ak~K~k~ 453 (583)
|.++.++...
T Consensus 91 V~~a~~~~~~ 100 (105)
T 2dnh_A 91 VKFADTDKES 100 (105)
T ss_dssp EEESCSSCCC
T ss_pred EEECccCccc
Confidence 9999887654
No 48
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.5e-16 Score=138.75 Aligned_cols=77 Identities=14% Similarity=0.156 Sum_probs=72.0
Q ss_pred CCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEec
Q 007955 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (583)
Q Consensus 371 ~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D---ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~A 447 (583)
...++|||+|| ++++|+++|+++|++||+|.+|+|+.| ++||||||+|.+.++|++|++ ++++.|+|+.|.|.++
T Consensus 9 ~~~~~lfV~~L-p~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 9 VKNRSVYIKGF-PTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp SGGGCEEEECC-CTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred CCCCEEEEECC-CCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 44689999999 999999999999999999999999986 689999999999999999999 7999999999999986
Q ss_pred cc
Q 007955 448 KE 449 (583)
Q Consensus 448 k~ 449 (583)
.+
T Consensus 87 ~~ 88 (103)
T 1s79_A 87 DD 88 (103)
T ss_dssp HH
T ss_pred hH
Confidence 53
No 49
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=2.4e-16 Score=135.54 Aligned_cols=84 Identities=32% Similarity=0.473 Sum_probs=77.4
Q ss_pred CCCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEE
Q 007955 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (583)
Q Consensus 369 ~~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~V 444 (583)
.....++|||+|| ++.+++++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++. +++.|+|+.|.|
T Consensus 12 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V 89 (105)
T 2dh8_A 12 GADEIGKLFVGGL-DWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDP 89 (105)
T ss_dssp CSSSSSEECCBSC-CTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBC
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEE
Confidence 3466899999999 999999999999999999999999986 5789999999999999999999 999999999999
Q ss_pred EecccCCCCc
Q 007955 445 KPYKEKGKVP 454 (583)
Q Consensus 445 k~Ak~K~k~~ 454 (583)
.++.++....
T Consensus 90 ~~a~~~~~~~ 99 (105)
T 2dh8_A 90 KPCTPRGMQP 99 (105)
T ss_dssp CCSCCSSCCT
T ss_pred EEccCCCCCC
Confidence 9998877543
No 50
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.65 E-value=5e-16 Score=129.02 Aligned_cols=78 Identities=22% Similarity=0.321 Sum_probs=72.9
Q ss_pred CCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEec
Q 007955 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (583)
Q Consensus 372 ~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~A 447 (583)
..++|||+|| ++.+++++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|+ .||++.+.|+.|.|.++
T Consensus 5 ~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a 82 (89)
T 3ucg_A 5 DARSIYVGNV-DYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPK 82 (89)
T ss_dssp HHTEEEEESC-CTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEET
T ss_pred cCCEEEEeCC-CCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEc
Confidence 3589999999 999999999999999999999999876 57999999999999999999 89999999999999999
Q ss_pred ccCC
Q 007955 448 KEKG 451 (583)
Q Consensus 448 k~K~ 451 (583)
+++.
T Consensus 83 ~~~~ 86 (89)
T 3ucg_A 83 RTNR 86 (89)
T ss_dssp TTTS
T ss_pred cCCC
Confidence 7653
No 51
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.65 E-value=6.5e-16 Score=139.22 Aligned_cols=85 Identities=24% Similarity=0.371 Sum_probs=78.2
Q ss_pred CCCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEE
Q 007955 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (583)
Q Consensus 369 ~~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~V 444 (583)
.....++|||+|| ++++++++|+++|++||+|++|+|+.+ ++||||||+|.+.++|++|++.||+..|+|+.|.|
T Consensus 38 ~~~~~~~l~V~nL-p~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 38 EPDVLRNLMVNYI-PTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CTTTTSEEEEESC-STTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 3456799999999 999999999999999999999999986 46999999999999999999999999999999999
Q ss_pred EecccCCCCc
Q 007955 445 KPYKEKGKVP 454 (583)
Q Consensus 445 k~Ak~K~k~~ 454 (583)
.+++++....
T Consensus 117 ~~a~~~~~~~ 126 (139)
T 1u6f_A 117 ALAASGHQRP 126 (139)
T ss_dssp EESSCCCCCC
T ss_pred EECCCCCCCC
Confidence 9998876653
No 52
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.65 E-value=2.9e-16 Score=134.13 Aligned_cols=77 Identities=14% Similarity=0.112 Sum_probs=73.0
Q ss_pred CCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEecccC
Q 007955 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEK 450 (583)
Q Consensus 371 ~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~Ak~K 450 (583)
+..++|||+|| +..+++++|+++|++||+|.+|+|+. +||||||+|.+.++|++|++.||+..|+|+.|.|.+++++
T Consensus 25 ~~~~~l~V~nl-p~~~~~~~l~~~f~~~G~i~~~~~~~--~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 101 (101)
T 2la4_A 25 PRVTTAYIGNI-PHFATEADLIPLFQNFGFILDFKHYP--EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKER 101 (101)
T ss_dssp SSCCEEEEESC-CTTCCHHHHHHHHHTTSCCSEEEEET--TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCCC
T ss_pred CCCCEEEEcCC-CcccCHHHHHHHHHhCCCEEEEEEec--CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccCC
Confidence 44689999999 99999999999999999999999996 8999999999999999999999999999999999998764
No 53
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=3.4e-16 Score=134.11 Aligned_cols=82 Identities=21% Similarity=0.353 Sum_probs=77.2
Q ss_pred CCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc--CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEecc
Q 007955 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ--QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (583)
Q Consensus 371 ~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D--ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~Ak 448 (583)
...++|||+|| ++.+|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.||++.|.|+.|.|.+++
T Consensus 13 ~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2d9p_A 13 YQVVNLYVKNL-DDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 91 (103)
T ss_dssp SSCCCEEEECC-CTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECS
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEec
Confidence 46789999999 999999999999999999999999976 789999999999999999999999999999999999998
Q ss_pred cCCCC
Q 007955 449 EKGKV 453 (583)
Q Consensus 449 ~K~k~ 453 (583)
++...
T Consensus 92 ~~~~~ 96 (103)
T 2d9p_A 92 RKEER 96 (103)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 87654
No 54
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=5.4e-16 Score=133.29 Aligned_cols=84 Identities=19% Similarity=0.345 Sum_probs=77.3
Q ss_pred CCCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc-----CCCceEEEEECCHHHHHHHHHhC-CCeEEcCeEE
Q 007955 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ-----QKRMFGFVTFVYPETVKIILAKG-NPHFVCDARV 442 (583)
Q Consensus 369 ~~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D-----ksRGfAFVtF~~~e~A~~Al~~m-ng~~L~GR~V 442 (583)
.....++|||+|| ++.+++++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.| |++.|.|+.|
T Consensus 11 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l 89 (107)
T 2cph_A 11 KKQTTSKILVRNI-PFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL 89 (107)
T ss_dssp CSSCCCCEEEESC-CTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBC
T ss_pred cCCCCCEEEEeCC-CCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEE
Confidence 3456799999999 999999999999999999999999876 47999999999999999999999 9999999999
Q ss_pred EEEecccCCCC
Q 007955 443 LVKPYKEKGKV 453 (583)
Q Consensus 443 ~Vk~Ak~K~k~ 453 (583)
.|.+++++...
T Consensus 90 ~v~~a~~~~~~ 100 (107)
T 2cph_A 90 VLEWADSEVTV 100 (107)
T ss_dssp EEEECCCCCCC
T ss_pred EEEeCCCCCCC
Confidence 99999887654
No 55
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=1.3e-15 Score=128.20 Aligned_cols=81 Identities=17% Similarity=0.178 Sum_probs=74.6
Q ss_pred CCCCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEec
Q 007955 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (583)
Q Consensus 368 ~~~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~A 447 (583)
......++|||+|| ++.+++++|+++|++||+|.+|+|++ +||||+|.+.++|++|++.||++.|.|+.|.|.++
T Consensus 5 ~~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~v~~v~~~~----~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 79 (92)
T 2dgt_A 5 SSGKASTKLHVGNI-SPTCTNQELRAKFEEYGPVIECDIVK----DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 79 (92)
T ss_dssp CCCCSSEEEEEESC-CSSCCHHHHHHHHHTTSCCCEEEECS----SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEES
T ss_pred CCCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEC----CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 44566899999999 99999999999999999999999974 59999999999999999999999999999999999
Q ss_pred ccCCCC
Q 007955 448 KEKGKV 453 (583)
Q Consensus 448 k~K~k~ 453 (583)
+++...
T Consensus 80 ~~~~~~ 85 (92)
T 2dgt_A 80 TSRLRT 85 (92)
T ss_dssp SCCCSC
T ss_pred cCCCCC
Confidence 887654
No 56
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=9.6e-16 Score=134.25 Aligned_cols=83 Identities=16% Similarity=0.231 Sum_probs=75.8
Q ss_pred CCCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEE
Q 007955 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (583)
Q Consensus 369 ~~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~V 444 (583)
.....++|||+|| ++.+|+++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.+++ .|.|+.|.|
T Consensus 13 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V 90 (116)
T 2cqd_A 13 KDTTFTKIFVGGL-PYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANV 90 (116)
T ss_dssp CSCSSSEEEEECC-CSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEE
Confidence 3456899999999 999999999999999999999999986 5899999999999999999999997 899999999
Q ss_pred EecccCCCC
Q 007955 445 KPYKEKGKV 453 (583)
Q Consensus 445 k~Ak~K~k~ 453 (583)
.++..+.+.
T Consensus 91 ~~a~~~~~~ 99 (116)
T 2cqd_A 91 NLAYLGAKP 99 (116)
T ss_dssp EESTTTCCC
T ss_pred EEcccCCCc
Confidence 999765443
No 57
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.64 E-value=7.7e-17 Score=138.74 Aligned_cols=77 Identities=17% Similarity=0.178 Sum_probs=73.0
Q ss_pred CcEEEEeCCCCC------CCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcC-eE
Q 007955 373 SRQIYLTFPADS------TFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCD-AR 441 (583)
Q Consensus 373 ~rtIYVgnL~~~------~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~G-R~ 441 (583)
.++|||+|| ++ ++++++|+++|++||+|.+|+|++| ++||||||+|.+.++|++|++.||+..|.| +.
T Consensus 6 ~~~vfV~nL-p~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 6 DQYIVVNGA-PVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGEEEEESC-CCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred CcEEEEeCC-CcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 689999999 99 9999999999999999999999987 589999999999999999999999999999 99
Q ss_pred EEEEecccC
Q 007955 442 VLVKPYKEK 450 (583)
Q Consensus 442 V~Vk~Ak~K 450 (583)
|.|.++.++
T Consensus 85 l~V~~a~~~ 93 (100)
T 3ns6_A 85 LFLYTMKDV 93 (100)
T ss_dssp CEEEESHHH
T ss_pred EEEEECchh
Confidence 999999764
No 58
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.64 E-value=8.4e-16 Score=134.37 Aligned_cols=81 Identities=21% Similarity=0.308 Sum_probs=73.0
Q ss_pred CCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 007955 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (583)
Q Consensus 371 ~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~ 446 (583)
...++|||+|| ++++|+++|+++|++||+|.+|+|+.| ++||||||+|.+.++|++|++.+ ++.|+|+.|.|.+
T Consensus 23 ~~~~~lfV~nL-p~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 23 SSGCKMFIGGL-SWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKV 100 (109)
T ss_dssp ---CCEEEESC-CTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEE
Confidence 45789999999 999999999999999999999999986 57999999999999999999996 5999999999999
Q ss_pred cccCCCC
Q 007955 447 YKEKGKV 453 (583)
Q Consensus 447 Ak~K~k~ 453 (583)
+.++...
T Consensus 101 a~~~~~~ 107 (109)
T 2rs2_A 101 AFPRRAQ 107 (109)
T ss_dssp CCCCCCC
T ss_pred ccCCCCC
Confidence 9887654
No 59
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=5.8e-16 Score=129.79 Aligned_cols=79 Identities=16% Similarity=0.257 Sum_probs=74.1
Q ss_pred CCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEeccc
Q 007955 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (583)
Q Consensus 370 ~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~Ak~ 449 (583)
....++|||+|| ++++++++|+++|++||+|.+|+|+ ||||||+|.+.++|++|++.||+..|+|+.|.|.++++
T Consensus 5 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 79 (90)
T 2dnq_A 5 SSGMVKLFIGNL-PREATEQEIRSLFEQYGKVLECDII----KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKN 79 (90)
T ss_dssp SSCCEEEEEESC-CSSCCHHHHHHHHHTSSCEEEEEEE----TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSC
T ss_pred CCCCeEEEEeCC-CCCCCHHHHHHHHHhCCCEEEEEEE----CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCC
Confidence 456799999999 9999999999999999999999997 69999999999999999999999999999999999988
Q ss_pred CCCC
Q 007955 450 KGKV 453 (583)
Q Consensus 450 K~k~ 453 (583)
+.+.
T Consensus 80 ~~~~ 83 (90)
T 2dnq_A 80 KSKA 83 (90)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 60
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=4e-16 Score=136.47 Aligned_cols=81 Identities=15% Similarity=0.162 Sum_probs=75.1
Q ss_pred CCCcEEEEeCCCCCCCCHHHHH---HHHhhcCCceeEEEecc-------CCCceEEEEECCHHHHHHHHHhCCCeEEcCe
Q 007955 371 PASRQIYLTFPADSTFREEDVS---NYFSIYGPVQDVRIPYQ-------QKRMFGFVTFVYPETVKIILAKGNPHFVCDA 440 (583)
Q Consensus 371 ~~~rtIYVgnL~~~~~tEedLr---e~FsqFG~V~~VrI~~D-------ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR 440 (583)
...++|||+|| ++++++++|+ ++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.||++.|+|+
T Consensus 13 ~~~~~l~V~nL-p~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 13 VQKNLVFVVGL-SQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCSSCEEEEEE-CTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred cCCCEEEEECC-CCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 45789999999 9999999999 99999999999999986 3569999999999999999999999999999
Q ss_pred EEEEEecccCCC
Q 007955 441 RVLVKPYKEKGK 452 (583)
Q Consensus 441 ~V~Vk~Ak~K~k 452 (583)
.|.|.+++++..
T Consensus 92 ~l~V~~a~~k~~ 103 (111)
T 2cpi_A 92 TLKASLGTTKYC 103 (111)
T ss_dssp EEEEESCCCCSC
T ss_pred EEEEEecccccc
Confidence 999999988763
No 61
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=8.2e-16 Score=133.84 Aligned_cols=82 Identities=18% Similarity=0.146 Sum_probs=75.6
Q ss_pred CCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 007955 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (583)
Q Consensus 370 ~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D---ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~ 446 (583)
....++|||+|| ++.+++++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.||++.|+|+.|.|.+
T Consensus 12 ~~~~~~l~V~nl-p~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 12 GRLGSTVFVANL-DYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCSCEEEESC-CTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 355789999999 999999999999999999999999987 5789999999999999999999999999999999999
Q ss_pred cccCCC
Q 007955 447 YKEKGK 452 (583)
Q Consensus 447 Ak~K~k 452 (583)
+.....
T Consensus 91 a~~~~~ 96 (114)
T 2do0_A 91 DERALP 96 (114)
T ss_dssp CSCCCC
T ss_pred cccCCC
Confidence 876543
No 62
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.64 E-value=9.6e-16 Score=127.26 Aligned_cols=76 Identities=21% Similarity=0.359 Sum_probs=70.4
Q ss_pred CCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEE
Q 007955 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (583)
Q Consensus 370 ~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk 445 (583)
....++|||+|| ++.+++++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++. +++.|+|+.|.|+
T Consensus 8 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 8 EEDAGKMFVGGL-SWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-KEHRLDGRVIDPK 85 (87)
T ss_dssp CSCTTEEEEECC-CTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS-SCEEETTEEEEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh-CCCEECCEEEEEE
Confidence 356789999999 999999999999999999999999876 5699999999999999999976 8899999999998
Q ss_pred ec
Q 007955 446 PY 447 (583)
Q Consensus 446 ~A 447 (583)
+|
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 63
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=7.7e-16 Score=134.05 Aligned_cols=83 Identities=16% Similarity=0.210 Sum_probs=77.0
Q ss_pred CCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCce--------eEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEE
Q 007955 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQ--------DVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFV 437 (583)
Q Consensus 370 ~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~--------~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L 437 (583)
....++|||+|| ++.+|+++|+++|++||.|. .|+|+.| ++||||||+|.+.++|++|++.||++.|
T Consensus 12 ~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 12 DSDNSAIYVQGL-NDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCEEEEECC-CTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred CCCCCEEEEcCC-CCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 356799999999 99999999999999999999 6999887 5799999999999999999999999999
Q ss_pred cCeEEEEEecccCCCC
Q 007955 438 CDARVLVKPYKEKGKV 453 (583)
Q Consensus 438 ~GR~V~Vk~Ak~K~k~ 453 (583)
.|+.|.|.+++++...
T Consensus 91 ~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 91 QGSKLKVSLARKKPPM 106 (113)
T ss_dssp TTEECEEECSSCCCCS
T ss_pred CCCEEEEEECCCCCCC
Confidence 9999999999887654
No 64
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.63 E-value=3.6e-16 Score=146.09 Aligned_cols=80 Identities=13% Similarity=0.148 Sum_probs=73.5
Q ss_pred CCCcEEEEeCCCCCCCCHHHHHHHHhhcC--CceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEE
Q 007955 371 PASRQIYLTFPADSTFREEDVSNYFSIYG--PVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (583)
Q Consensus 371 ~~~rtIYVgnL~~~~~tEedLre~FsqFG--~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~V 444 (583)
...++|||+|| ++++||++|+++|++|| +|.+|+|+.| ++||||||+|.+.++|++|++.||++.|+|+.|.|
T Consensus 53 ~~~~~lfVgnL-p~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V 131 (156)
T 3n9u_C 53 NRRAAVYVGSF-SWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDV 131 (156)
T ss_dssp ---CEEEEECC-CTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEE
Confidence 34689999999 99999999999999999 9999999987 68999999999999999999999999999999999
Q ss_pred EecccCC
Q 007955 445 KPYKEKG 451 (583)
Q Consensus 445 k~Ak~K~ 451 (583)
.++.++.
T Consensus 132 ~~a~~~~ 138 (156)
T 3n9u_C 132 RPATRQN 138 (156)
T ss_dssp EECCHHH
T ss_pred EEcCCCc
Confidence 9998654
No 65
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=2.6e-16 Score=138.24 Aligned_cols=80 Identities=11% Similarity=0.071 Sum_probs=74.3
Q ss_pred CCCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEecc
Q 007955 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (583)
Q Consensus 369 ~~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~Ak 448 (583)
.....++|||+|| ++.+++++|+++|++||+|.+|+|+. +||||||+|.+.++|++|++.||+..|.|+.|.|.++.
T Consensus 6 ~~~~~~~l~V~nL-p~~~te~~L~~~F~~~G~i~~v~i~~--~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 6 SGRSKTVILAKNL-PAGTLAAEIQETFSRFGSLGRVLLPE--GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp TSEEEEEEEEESC-CTTCCHHHHHHHHHTTSCEEEEECCS--SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEeC--CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 3445789999999 99999999999999999999999987 89999999999999999999999999999999999997
Q ss_pred cCC
Q 007955 449 EKG 451 (583)
Q Consensus 449 ~K~ 451 (583)
...
T Consensus 83 ~~~ 85 (111)
T 1whx_A 83 IGV 85 (111)
T ss_dssp TTT
T ss_pred CCc
Confidence 654
No 66
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=3.2e-16 Score=137.40 Aligned_cols=79 Identities=11% Similarity=0.053 Sum_probs=72.0
Q ss_pred CCCcEEEEeCCCCC-CCCHHHHHHHHhhcCCceeEEEeccCCCceEEEEECCHHHHHHHHHhCCC--eEEcCeEEEEEec
Q 007955 371 PASRQIYLTFPADS-TFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNP--HFVCDARVLVKPY 447 (583)
Q Consensus 371 ~~~rtIYVgnL~~~-~~tEedLre~FsqFG~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~mng--~~L~GR~V~Vk~A 447 (583)
...++|||+|| ++ ++||++|+++|++||+|.+|+|++ .||||||+|.+.++|++|++.|++ ..|.|++|.|.++
T Consensus 13 ~p~~~l~V~nL-p~~~~te~dL~~lF~~fG~V~~v~i~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a 89 (102)
T 1x4d_A 13 ETRRVVHIMDF-QRGKNLRYQLLQLVEPFGVISNHLILN--KINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLS 89 (102)
T ss_dssp CCCCEEEEESC-CCSSSHHHHHHTTTGGGSCEEEEEECS--SSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEE
T ss_pred CCCCEEEEeCC-CCCcCCHHHHHHHHHhcCCEEEEEEEc--CCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEEC
Confidence 45789999999 98 999999999999999999999998 579999999999999999998874 5699999999999
Q ss_pred ccCCC
Q 007955 448 KEKGK 452 (583)
Q Consensus 448 k~K~k 452 (583)
+.+.+
T Consensus 90 ~~~~~ 94 (102)
T 1x4d_A 90 QKYKR 94 (102)
T ss_dssp CCCTT
T ss_pred CCCCC
Confidence 86543
No 67
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.63 E-value=1.3e-15 Score=136.54 Aligned_cols=80 Identities=20% Similarity=0.314 Sum_probs=73.8
Q ss_pred CCCCCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEE
Q 007955 367 GIVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARV 442 (583)
Q Consensus 367 g~~~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V 442 (583)
+......++|||+|| +..+++++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.||++.|.|+.|
T Consensus 57 ~~~~~~~~~l~v~nl-p~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 135 (140)
T 2ku7_A 57 GGSATTKRVLYVGGL-AEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTI 135 (140)
T ss_dssp CSSCSSCCEEEEECC-CTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEE
T ss_pred CCCCCCCcEEEEEeC-CCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 345567899999999 999999999999999999999999886 579999999999999999999999999999999
Q ss_pred EEEec
Q 007955 443 LVKPY 447 (583)
Q Consensus 443 ~Vk~A 447 (583)
.|.+|
T Consensus 136 ~v~~A 140 (140)
T 2ku7_A 136 RVNLA 140 (140)
T ss_dssp EEEC-
T ss_pred EEEeC
Confidence 99875
No 68
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.63 E-value=7.4e-16 Score=136.32 Aligned_cols=82 Identities=18% Similarity=0.241 Sum_probs=76.3
Q ss_pred CCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEec
Q 007955 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (583)
Q Consensus 371 ~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D---ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~A 447 (583)
...++|||+|| ++++|+++|+++|++||+|++|+|+.+ +++|||||+|.+.++|++|++.||+..|+|+.|.|.++
T Consensus 5 ~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 5 DHPGKLFIGGL-NRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp CSCCEEEEECC-TTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 34689999999 999999999999999999999999986 58899999999999999999999999999999999999
Q ss_pred ccCCCC
Q 007955 448 KEKGKV 453 (583)
Q Consensus 448 k~K~k~ 453 (583)
+++...
T Consensus 84 ~~~~~~ 89 (116)
T 2fy1_A 84 KKPSFQ 89 (116)
T ss_dssp CCSSCS
T ss_pred CCCCCC
Confidence 876643
No 69
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.63 E-value=7.4e-16 Score=135.14 Aligned_cols=79 Identities=22% Similarity=0.404 Sum_probs=73.2
Q ss_pred CCCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEE
Q 007955 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (583)
Q Consensus 369 ~~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~V 444 (583)
..+..++|||+|| ++++++++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.||+..|+|+.|+|
T Consensus 36 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 114 (118)
T 2khc_A 36 EGPEGCNLFIYHL-PQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKV 114 (118)
T ss_dssp CCCCSEEEEEECS-CTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 3456799999999 999999999999999999999999886 57999999999999999999999999999999999
Q ss_pred Eecc
Q 007955 445 KPYK 448 (583)
Q Consensus 445 k~Ak 448 (583)
.+++
T Consensus 115 ~~ak 118 (118)
T 2khc_A 115 QLKK 118 (118)
T ss_dssp EEC-
T ss_pred EecC
Confidence 9874
No 70
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.63 E-value=7.6e-16 Score=135.04 Aligned_cols=80 Identities=15% Similarity=0.132 Sum_probs=73.1
Q ss_pred CCCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEeccCCCceEEEEECCHHHHHHHHHhCCCe--EEcCeEEEEEe
Q 007955 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPH--FVCDARVLVKP 446 (583)
Q Consensus 369 ~~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~mng~--~L~GR~V~Vk~ 446 (583)
..+.+++|||+|| ++++||++|+++|++||+|.+|+|++ +||||||+|.+.++|.+|++.|++. .|.|++|.|.+
T Consensus 17 ~~~ps~~l~V~NL-p~~~te~~L~~lF~~fG~V~~v~i~~--~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~ 93 (100)
T 3r27_A 17 KTPASPVVHIRGL-IDGVVEADLVEALQEFGPISYVVVMP--KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNY 93 (100)
T ss_dssp CCCCCSEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEE
T ss_pred cCCCCcEEEEeCC-CCCCCHHHHHHHHhccCCEEEEEEEc--CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEe
Confidence 3456799999999 99999999999999999999999997 7999999999999999999998765 48899999999
Q ss_pred cccCC
Q 007955 447 YKEKG 451 (583)
Q Consensus 447 Ak~K~ 451 (583)
++.+.
T Consensus 94 S~~k~ 98 (100)
T 3r27_A 94 STSQK 98 (100)
T ss_dssp CSCSC
T ss_pred ccccc
Confidence 98764
No 71
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=9.9e-16 Score=130.11 Aligned_cols=80 Identities=11% Similarity=0.144 Sum_probs=74.8
Q ss_pred CCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEeccCCCceEEEEECCHHHHHHHHHhCCCeEEc--CeEEEEEec
Q 007955 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVC--DARVLVKPY 447 (583)
Q Consensus 370 ~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~mng~~L~--GR~V~Vk~A 447 (583)
.+..++|||+|| ++.+|+++|+++|++||+|.+|+|+. .||||||+|.+.++|++|++.||+..|. |+.|.|.++
T Consensus 14 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~v~~v~~~~--~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a 90 (97)
T 1why_A 14 ANPTTRLWVGGL-GPNTSLAALAREFDRFGSIRTIDHVK--GDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFA 90 (97)
T ss_dssp CCCCSCEEEECC-CSSCCHHHHHHHHHTTSCEEEEEECS--SSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEEC
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEeC--CCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEEC
Confidence 355789999999 99999999999999999999999998 4899999999999999999999999999 999999999
Q ss_pred ccCCC
Q 007955 448 KEKGK 452 (583)
Q Consensus 448 k~K~k 452 (583)
+++..
T Consensus 91 ~~~~~ 95 (97)
T 1why_A 91 KSGPS 95 (97)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 88764
No 72
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=5.3e-16 Score=131.56 Aligned_cols=82 Identities=11% Similarity=0.026 Sum_probs=74.8
Q ss_pred CCCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEE
Q 007955 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (583)
Q Consensus 369 ~~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~V 444 (583)
.....++|||+|| ++.+++++|+++|++||.|.+|.++.+ +++|||||+|.+.++|++|++.||++.|.|+.|.|
T Consensus 11 ~~~~~~~l~v~nL-p~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 89 (98)
T 2cqp_A 11 GKPGPTIIKVQNM-PFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKL 89 (98)
T ss_dssp CCCSSEEEEEESC-CTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4456789999999 999999999999999999998888775 57899999999999999999999999999999999
Q ss_pred EecccCC
Q 007955 445 KPYKEKG 451 (583)
Q Consensus 445 k~Ak~K~ 451 (583)
.++..+.
T Consensus 90 ~~a~~~~ 96 (98)
T 2cqp_A 90 VLGSGPS 96 (98)
T ss_dssp EESSCSS
T ss_pred EEcCCCC
Confidence 9987543
No 73
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=6.3e-16 Score=131.80 Aligned_cols=80 Identities=15% Similarity=0.205 Sum_probs=75.2
Q ss_pred CCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEeccc
Q 007955 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (583)
Q Consensus 370 ~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~Ak~ 449 (583)
....++|||+|| ++.+|+++|+++|++||+|.+|+|+. .||||||+|.+.++|++|++.|+++.|.|+.|.|.++++
T Consensus 12 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~~~~--~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 88 (99)
T 2cpj_A 12 FTQRSRLFVGNL-PPDITEEEMRKLFEKYGKAGEVFIHK--DKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACH 88 (99)
T ss_dssp CCCTTEEEEESC-CTTCCHHHHHHHTSTTCCCSEEEEET--TTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSC
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHhhcCCeEEEEEec--CCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCC
Confidence 456789999999 99999999999999999999999997 699999999999999999999999999999999999987
Q ss_pred CCC
Q 007955 450 KGK 452 (583)
Q Consensus 450 K~k 452 (583)
+..
T Consensus 89 ~~~ 91 (99)
T 2cpj_A 89 SAS 91 (99)
T ss_dssp CSC
T ss_pred CCC
Confidence 654
No 74
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1e-15 Score=132.85 Aligned_cols=80 Identities=19% Similarity=0.220 Sum_probs=75.1
Q ss_pred CCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEecccC
Q 007955 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEK 450 (583)
Q Consensus 371 ~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~Ak~K 450 (583)
...++|||+|| +..+++++|+++|++||+|.+|+|+.+ ||||||+|.+.++|++|++.|+++.|+|+.|.|.+++++
T Consensus 23 ~~~~~l~V~nl-~~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 99 (109)
T 1x4g_A 23 PKNCTVYCGGI-ASGLTDQLMRQTFSPFGQIMEIRVFPE--KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKES 99 (109)
T ss_dssp SSCCEEEEECC-SSCCCHHHHHHHHHHHSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred CCCcEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEeCC--CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCC
Confidence 45789999999 999999999999999999999999984 999999999999999999999999999999999999887
Q ss_pred CCC
Q 007955 451 GKV 453 (583)
Q Consensus 451 ~k~ 453 (583)
...
T Consensus 100 ~~~ 102 (109)
T 1x4g_A 100 PDM 102 (109)
T ss_dssp CSS
T ss_pred CCC
Confidence 653
No 75
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.63 E-value=4.3e-16 Score=131.67 Aligned_cols=83 Identities=16% Similarity=0.249 Sum_probs=76.6
Q ss_pred CCCcEEEEeCCCCCCCCHHHHH----HHHhhcCCceeEEEecc-CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEE
Q 007955 371 PASRQIYLTFPADSTFREEDVS----NYFSIYGPVQDVRIPYQ-QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (583)
Q Consensus 371 ~~~rtIYVgnL~~~~~tEedLr----e~FsqFG~V~~VrI~~D-ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk 445 (583)
+..++|||+|| ++.+++++|+ ++|++||+|.+|+|+.. +++|||||+|.+.++|++|++.||+..++|+.|.|.
T Consensus 6 ~~~~~l~V~nL-p~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (97)
T 1nu4_A 6 RPNHTIYINNL-NEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 84 (97)
T ss_dssp CCCSEEEEESC-CTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 56789999999 9999999999 99999999999999854 689999999999999999999999999999999999
Q ss_pred ecccCCCCc
Q 007955 446 PYKEKGKVP 454 (583)
Q Consensus 446 ~Ak~K~k~~ 454 (583)
+++++....
T Consensus 85 ~a~~~~~~~ 93 (97)
T 1nu4_A 85 YAKTDSDII 93 (97)
T ss_dssp ECSSCCTHH
T ss_pred EccCCCccc
Confidence 999876543
No 76
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.63 E-value=1.7e-15 Score=130.26 Aligned_cols=80 Identities=14% Similarity=0.168 Sum_probs=74.0
Q ss_pred CCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEeccc
Q 007955 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (583)
Q Consensus 370 ~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~Ak~ 449 (583)
....++|||+|| ++.+|+++|+++|++||+|.+|+|+ ||||||+|.+.++|++|++.||++.|+|+.|.|.++++
T Consensus 8 ~~~~~~l~V~nl-~~~~t~~~l~~~F~~~G~i~~v~~~----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 82 (103)
T 2dgu_A 8 MAKVKVLFVRNL-ANTVTEEILEKAFSQFGKLERVKKL----KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP 82 (103)
T ss_dssp CCCCCCEEEECC-CTTCCHHHHHHHHHHHSCEEEEEEC----SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEE----CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCC
Confidence 355789999999 9999999999999999999999987 57999999999999999999999999999999999988
Q ss_pred CCCCc
Q 007955 450 KGKVP 454 (583)
Q Consensus 450 K~k~~ 454 (583)
+....
T Consensus 83 ~~~~~ 87 (103)
T 2dgu_A 83 PDQKR 87 (103)
T ss_dssp CCCCC
T ss_pred Ccccc
Confidence 76544
No 77
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.1e-15 Score=133.32 Aligned_cols=80 Identities=11% Similarity=0.092 Sum_probs=73.4
Q ss_pred CCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEeccCCCceEEEEECCHHHHHHHHHhC--CCeEEcCeEEEEEecc
Q 007955 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKG--NPHFVCDARVLVKPYK 448 (583)
Q Consensus 371 ~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~m--ng~~L~GR~V~Vk~Ak 448 (583)
+..++|||+|| ++.+||++|+++|++||+|.+|+|+. .||||||+|.+.++|++|++.+ ++..|.|++|.|.+++
T Consensus 13 ~p~~~l~V~nL-p~~~te~~L~~~F~~fG~v~~v~i~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~ 89 (101)
T 2cq1_A 13 APSRVLHIRKL-PGEVTETEVIALGLPFGKVTNILMLK--GKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSN 89 (101)
T ss_dssp SCCSEEEEESC-CTTCCHHHHHHTTTTTSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECS
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEC--CCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcC
Confidence 45789999999 99999999999999999999999998 5999999999999999999976 5788999999999998
Q ss_pred cCCCC
Q 007955 449 EKGKV 453 (583)
Q Consensus 449 ~K~k~ 453 (583)
.+...
T Consensus 90 ~~~~~ 94 (101)
T 2cq1_A 90 HKELK 94 (101)
T ss_dssp CSSCC
T ss_pred cccCc
Confidence 76654
No 78
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.63 E-value=8.7e-16 Score=139.33 Aligned_cols=82 Identities=10% Similarity=0.116 Sum_probs=74.9
Q ss_pred CCCCcEEEEeCCCCCCCCHHHHH----HHHhhcCCceeEEEecc-CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEE
Q 007955 370 NPASRQIYLTFPADSTFREEDVS----NYFSIYGPVQDVRIPYQ-QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (583)
Q Consensus 370 ~~~~rtIYVgnL~~~~~tEedLr----e~FsqFG~V~~VrI~~D-ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~V 444 (583)
.+..++|||+|| ++.+++++|+ ++|++||+|.+|.|+.. ++||||||+|.+.++|++|++.||+..|.|+.|.|
T Consensus 26 ~~p~~~LfV~nL-~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V 104 (127)
T 2a3j_A 26 TEPSQVVLITNI-NPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVI 104 (127)
T ss_dssp CSCCSEEEEESC-CTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEE
Confidence 345789999999 9999999876 69999999999999765 79999999999999999999999999999999999
Q ss_pred EecccCCC
Q 007955 445 KPYKEKGK 452 (583)
Q Consensus 445 k~Ak~K~k 452 (583)
.+++.+..
T Consensus 105 ~~a~~~~~ 112 (127)
T 2a3j_A 105 TFSETPQS 112 (127)
T ss_dssp EECCCCCH
T ss_pred EEccCcch
Confidence 99987654
No 79
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.63 E-value=9.8e-16 Score=131.49 Aligned_cols=81 Identities=15% Similarity=0.167 Sum_probs=74.5
Q ss_pred CCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEE
Q 007955 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (583)
Q Consensus 370 ~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk 445 (583)
....++|||+|| ++.+++++|+++|++|| |.+|+|+.| ++||||||+|.+.++|++|+ .||+..|.|+.|.|.
T Consensus 12 ~~~~~~l~V~nL-p~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 88 (103)
T 2dng_A 12 TEPPYTAYVGNL-PFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVD 88 (103)
T ss_dssp SSSCEEEEEESC-CTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEE
T ss_pred CCCCeEEEEeCC-CCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEE
Confidence 345789999999 99999999999999997 999999987 47999999999999999999 899999999999999
Q ss_pred ecccCCCC
Q 007955 446 PYKEKGKV 453 (583)
Q Consensus 446 ~Ak~K~k~ 453 (583)
++.++...
T Consensus 89 ~a~~~~~~ 96 (103)
T 2dng_A 89 IAEGRKQD 96 (103)
T ss_dssp ECCCCCCC
T ss_pred EecCCCCC
Confidence 99876653
No 80
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.3e-15 Score=133.41 Aligned_cols=80 Identities=25% Similarity=0.355 Sum_probs=74.9
Q ss_pred CCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEec
Q 007955 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (583)
Q Consensus 372 ~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~A 447 (583)
..++|||+|| ++.+|+++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++. +++.|+|+.|.|.++
T Consensus 26 ~~~~l~V~nL-p~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 26 QFRKLFIGGL-SFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHTEEEEECC-TTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECC
T ss_pred CCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEEC
Confidence 3589999999 999999999999999999999999986 5799999999999999999999 999999999999999
Q ss_pred ccCCCC
Q 007955 448 KEKGKV 453 (583)
Q Consensus 448 k~K~k~ 453 (583)
.++...
T Consensus 104 ~~~~~~ 109 (116)
T 1x4b_A 104 VAREES 109 (116)
T ss_dssp SSCCCC
T ss_pred CCCccC
Confidence 887654
No 81
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.62 E-value=5.4e-16 Score=140.11 Aligned_cols=82 Identities=26% Similarity=0.260 Sum_probs=76.7
Q ss_pred CCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEE
Q 007955 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (583)
Q Consensus 370 ~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk 445 (583)
....++|||+|| ++.+++++|+++|++||+|.+|+|+.| ++||||||+|.+.++|++|++.||+..|+|+.|.|.
T Consensus 43 ~~~~~~l~V~nL-p~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~ 121 (129)
T 2kxn_B 43 PDPNCCLGVFGL-SLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 121 (129)
T ss_dssp CCCSSCBCEETC-TTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEES
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 355789999999 999999999999999999999999986 689999999999999999999999999999999999
Q ss_pred ecccCCC
Q 007955 446 PYKEKGK 452 (583)
Q Consensus 446 ~Ak~K~k 452 (583)
+++++..
T Consensus 122 ~a~~~~p 128 (129)
T 2kxn_B 122 FSITKRP 128 (129)
T ss_dssp CCSSSSC
T ss_pred EecCCCC
Confidence 9988764
No 82
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=7.8e-16 Score=138.74 Aligned_cols=82 Identities=12% Similarity=0.083 Sum_probs=74.3
Q ss_pred CCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEeccCCCceEEEEECCHHHHHHHHHhCC--CeEEcCeEEEEEec
Q 007955 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGN--PHFVCDARVLVKPY 447 (583)
Q Consensus 370 ~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~mn--g~~L~GR~V~Vk~A 447 (583)
.+..++|||+|| ++++||++|+++|++||+|++|+|+. .||||||+|.+.++|++|++.++ +..|.|+.|+|.++
T Consensus 28 ~~ps~~LfVgNL-p~~vte~dL~~lF~~fG~V~~v~i~~--~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a 104 (119)
T 2ad9_A 28 GVPSRVIHIRKL-PIDVTEGEVISLGLPFGKVTNLLMLK--GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 104 (119)
T ss_dssp SSCCSEEEEESC-CTTCCHHHHHHHHTTTSCCCEEEEEG--GGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEEC
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEeC--CCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEc
Confidence 355789999999 99999999999999999999999998 58999999999999999999886 46899999999999
Q ss_pred ccCCCCc
Q 007955 448 KEKGKVP 454 (583)
Q Consensus 448 k~K~k~~ 454 (583)
+.+....
T Consensus 105 ~~k~~~~ 111 (119)
T 2ad9_A 105 NHKELKT 111 (119)
T ss_dssp SSSSCCC
T ss_pred cCCCCCc
Confidence 8776543
No 83
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.62 E-value=1.1e-15 Score=131.59 Aligned_cols=79 Identities=10% Similarity=0.102 Sum_probs=74.0
Q ss_pred CCCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEE
Q 007955 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (583)
Q Consensus 369 ~~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D---ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk 445 (583)
.....++|||+|| ++.+|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.||+..|.|+.|.|.
T Consensus 25 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 25 GVETGGKLLVSNL-DFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCCSEEEEEESC-CTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 3456899999999 999999999999999999999999986 679999999999999999999999999999999999
Q ss_pred ecc
Q 007955 446 PYK 448 (583)
Q Consensus 446 ~Ak 448 (583)
++.
T Consensus 104 ~a~ 106 (107)
T 3ulh_A 104 LVT 106 (107)
T ss_dssp EEC
T ss_pred EeC
Confidence 875
No 84
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.62 E-value=3e-16 Score=141.12 Aligned_cols=82 Identities=15% Similarity=0.123 Sum_probs=75.5
Q ss_pred CCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCcee--EEEecc----CCCceEEEEECCHHHHHHHHHhCCCe----EEcC
Q 007955 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQD--VRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPH----FVCD 439 (583)
Q Consensus 370 ~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~--VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~----~L~G 439 (583)
....++|||+|| ++++||++|+++|++||.|.. |+|++| ++||||||+|.+. +|.+|+..||+. .|+|
T Consensus 20 ~~~~~~lfV~nL-~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 20 ENANDTIILRNL-NPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp SCCCCEEEECSC-CTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC
Confidence 356789999999 999999999999999999976 999987 5899999999999 999999999999 9999
Q ss_pred eEEEEEecccCCCC
Q 007955 440 ARVLVKPYKEKGKV 453 (583)
Q Consensus 440 R~V~Vk~Ak~K~k~ 453 (583)
+.|.|.+++++.+.
T Consensus 98 r~l~V~~a~~~~~~ 111 (131)
T 2m2b_A 98 KTINVEFAKGSKRD 111 (131)
T ss_dssp CCCCCEECCCSCCC
T ss_pred EEEEEEECCCCCCC
Confidence 99999999876553
No 85
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.2e-15 Score=131.21 Aligned_cols=80 Identities=18% Similarity=0.274 Sum_probs=74.0
Q ss_pred CCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc-----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEE
Q 007955 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ-----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (583)
Q Consensus 371 ~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D-----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk 445 (583)
...++|||+|| ++.+++++|+++|++|| |.+|+|+.+ +++|||||+|.+.++|++|+ .||++.|.|+.|.|.
T Consensus 13 ~~~~~l~V~nl-p~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 13 SPPYTAFLGNL-PYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVD 89 (104)
T ss_dssp SSCEEEEEESC-CSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEE
T ss_pred CCCCEEEEeCC-CCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEE
Confidence 45689999999 99999999999999999 999999876 46999999999999999999 899999999999999
Q ss_pred ecccCCCC
Q 007955 446 PYKEKGKV 453 (583)
Q Consensus 446 ~Ak~K~k~ 453 (583)
++.++...
T Consensus 90 ~a~~~~~~ 97 (104)
T 1wi8_A 90 VADQAQDK 97 (104)
T ss_dssp ECCCCCCC
T ss_pred EccCCCCC
Confidence 99887654
No 86
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.62 E-value=1.1e-15 Score=132.53 Aligned_cols=80 Identities=11% Similarity=0.144 Sum_probs=73.6
Q ss_pred CCcEEEEeCCCCCCC------CHHHHHHHHhhcCCceeEEEecc--CCCceEEEEECCHHHHHHHHHhCCCeEEcCe-EE
Q 007955 372 ASRQIYLTFPADSTF------REEDVSNYFSIYGPVQDVRIPYQ--QKRMFGFVTFVYPETVKIILAKGNPHFVCDA-RV 442 (583)
Q Consensus 372 ~~rtIYVgnL~~~~~------tEedLre~FsqFG~V~~VrI~~D--ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR-~V 442 (583)
..++|||+|| ++.+ |+++|+++|++||+|.+|+|+.. ++||||||+|.+.++|++|+..||+..|+|+ .|
T Consensus 14 ~~~~l~V~nL-p~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l 92 (105)
T 2nlw_A 14 IDSVIVVDNV-PQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 92 (105)
T ss_dssp CCSEEEEESC-CCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEE
T ss_pred CCCEEEEeCC-CcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceE
Confidence 4689999999 8888 78999999999999999999854 6899999999999999999999999999999 99
Q ss_pred EEEecccCCC
Q 007955 443 LVKPYKEKGK 452 (583)
Q Consensus 443 ~Vk~Ak~K~k 452 (583)
.|.++.+..+
T Consensus 93 ~V~~a~~~~k 102 (105)
T 2nlw_A 93 RVNLFTDFDK 102 (105)
T ss_dssp EEECSCCCCC
T ss_pred EEEEcchHhh
Confidence 9999986654
No 87
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.62 E-value=6.3e-16 Score=135.15 Aligned_cols=82 Identities=17% Similarity=0.294 Sum_probs=76.3
Q ss_pred CCCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEE
Q 007955 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (583)
Q Consensus 369 ~~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~V 444 (583)
..+..++|||+|| +..+++++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.||+..|.|+.|.|
T Consensus 22 ~~~~~~~l~V~nL-p~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 100 (108)
T 2jrs_A 22 GSAGPMRLYVGSL-HFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 100 (108)
T ss_dssp SCSSCEEEEEECC-CSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 3456799999999 999999999999999999999999876 57899999999999999999999999999999999
Q ss_pred EecccCC
Q 007955 445 KPYKEKG 451 (583)
Q Consensus 445 k~Ak~K~ 451 (583)
.+++++.
T Consensus 101 ~~a~~k~ 107 (108)
T 2jrs_A 101 GHVTERT 107 (108)
T ss_dssp ECSCSSC
T ss_pred EEcccCC
Confidence 9998775
No 88
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=5.9e-16 Score=132.63 Aligned_cols=82 Identities=12% Similarity=0.151 Sum_probs=76.2
Q ss_pred CCCcEEEEeCCCCCCCCHHHHHHHHhh-cCCceeEEEecc---CCCceEEEEECCHHHHHHHHHhCCCeE-EcCeEEEEE
Q 007955 371 PASRQIYLTFPADSTFREEDVSNYFSI-YGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHF-VCDARVLVK 445 (583)
Q Consensus 371 ~~~rtIYVgnL~~~~~tEedLre~Fsq-FG~V~~VrI~~D---ksRGfAFVtF~~~e~A~~Al~~mng~~-L~GR~V~Vk 445 (583)
...++|||+|| ++.+|+++|+++|++ ||+|.+|+|+.| ++||||||+|.+.++|++|++.|++.. |+|+.|.|.
T Consensus 7 ~~~~~l~V~nL-p~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 7 GPEYSLFVGDL-TPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SCCCCEEEECC-CTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCcEEEEeCC-CCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 45789999999 999999999999999 999999999986 589999999999999999999999999 999999999
Q ss_pred ecccCCCC
Q 007955 446 PYKEKGKV 453 (583)
Q Consensus 446 ~Ak~K~k~ 453 (583)
++.++...
T Consensus 86 ~a~~~~~~ 93 (104)
T 2dhg_A 86 VAIPKASR 93 (104)
T ss_dssp BCCCCCSC
T ss_pred EccCCCcC
Confidence 99876643
No 89
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.62 E-value=2.6e-15 Score=133.13 Aligned_cols=85 Identities=8% Similarity=0.067 Sum_probs=77.8
Q ss_pred CCCCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEE
Q 007955 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (583)
Q Consensus 368 ~~~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D---ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~V 444 (583)
......++|||+|| ++.+++++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.||+..|+|+.|.|
T Consensus 30 ~~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 108 (124)
T 2kt5_A 30 EGVETGAKLLVSNL-DFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDI 108 (124)
T ss_dssp CCCSSCEEEEEESC-CSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred CCCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 34456789999999 999999999999999999999999987 58999999999999999999999999999999999
Q ss_pred EecccCCCC
Q 007955 445 KPYKEKGKV 453 (583)
Q Consensus 445 k~Ak~K~k~ 453 (583)
.++.+....
T Consensus 109 ~~a~~~~~~ 117 (124)
T 2kt5_A 109 QLVASQIDL 117 (124)
T ss_dssp EEECCTTCC
T ss_pred EEeCCCCCC
Confidence 999876543
No 90
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.62 E-value=8.4e-16 Score=131.01 Aligned_cols=80 Identities=14% Similarity=0.139 Sum_probs=74.0
Q ss_pred CCCCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCcee--------EEEecc----CCCceEEEEECCHHHHHHHHHhCCCe
Q 007955 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQD--------VRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPH 435 (583)
Q Consensus 368 ~~~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~--------VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~ 435 (583)
...+..++|||+|| ++++++++|+++|++||.|.+ |+|+.| ++||||||+|.+.++|++|++.||+.
T Consensus 8 ~~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 8 HSHSDNNTIFVQGL-GENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp CSCCCCSEEEEECC-CSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCCCEEEEeCC-CCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 34466799999999 999999999999999999999 999886 57999999999999999999999999
Q ss_pred EEcCeEEEEEecc
Q 007955 436 FVCDARVLVKPYK 448 (583)
Q Consensus 436 ~L~GR~V~Vk~Ak 448 (583)
.|.|+.|.|.+|+
T Consensus 87 ~~~g~~l~V~~A~ 99 (99)
T 2la6_A 87 EFSGNPIKVSFAT 99 (99)
T ss_dssp BSSSSBCEEEECC
T ss_pred EeCCcEEEEEecC
Confidence 9999999999874
No 91
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.62 E-value=8.8e-16 Score=136.15 Aligned_cols=85 Identities=13% Similarity=0.180 Sum_probs=78.0
Q ss_pred CCCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEE
Q 007955 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (583)
Q Consensus 369 ~~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~V 444 (583)
.....++|||+|| ++.+|+++|+++|++||+|.+|.|+.+ +++|||||+|.+.++|++|++.||+..|+|+.|.|
T Consensus 18 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 96 (126)
T 3ex7_B 18 RSVEGWILFVTGV-HEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 96 (126)
T ss_dssp CCSSSEEEEEESC-CTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3456789999999 999999999999999999999999876 57999999999999999999999999999999999
Q ss_pred EecccCCCCc
Q 007955 445 KPYKEKGKVP 454 (583)
Q Consensus 445 k~Ak~K~k~~ 454 (583)
.++.++....
T Consensus 97 ~~a~~~~~~~ 106 (126)
T 3ex7_B 97 DWCFVRGPPK 106 (126)
T ss_dssp EESEESSSCC
T ss_pred EEecCCCCCC
Confidence 9998876554
No 92
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.62 E-value=1e-15 Score=129.61 Aligned_cols=80 Identities=21% Similarity=0.343 Sum_probs=64.3
Q ss_pred CCCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEecc
Q 007955 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (583)
Q Consensus 369 ~~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~Ak 448 (583)
..+...+||||+| ++++||++|+++|++||+|.+|+|+++ +||||||+|.++++|+++. . ....+.|++|.|.++.
T Consensus 7 ~~~~~~~l~V~~L-p~~~te~~L~~~F~~~G~i~~v~i~~~-srGfaFV~F~~~~~A~~~~-~-~~~~~~g~~v~v~~a~ 82 (89)
T 3d2w_A 7 HHHHGSKVFVGRC-TEDMTAEELQQFFCQYGEVVDVFIPKP-FRAFAFVTFADDKVAQSLC-G-EDLIIKGISVHISNAE 82 (89)
T ss_dssp ----CCEEEEESC-CTTCCHHHHHHHHTTTSCEEEEECCSS-CCSEEEEEESCHHHHHHHT-T-CEEEETTEEEEEEECC
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHhccCCEEEEEEeeC-CCCEEEEEECCHHHHHHHc-C-CCcccCCEEEEEEEcC
Confidence 3466789999999 999999999999999999999999986 8999999999999998532 2 2345669999999998
Q ss_pred cCCC
Q 007955 449 EKGK 452 (583)
Q Consensus 449 ~K~k 452 (583)
++..
T Consensus 83 ~k~~ 86 (89)
T 3d2w_A 83 PKHN 86 (89)
T ss_dssp ----
T ss_pred CCCc
Confidence 7654
No 93
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=3.3e-15 Score=127.98 Aligned_cols=81 Identities=22% Similarity=0.283 Sum_probs=74.1
Q ss_pred CCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEE
Q 007955 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (583)
Q Consensus 370 ~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk 445 (583)
....++|||+|| ++.+++++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++. ++.|+|+.|.|.
T Consensus 12 ~~~~~~l~v~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~l~v~ 88 (103)
T 2cqg_A 12 VQKTSDLIVLGL-PWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ--RHMIDGRWCDCK 88 (103)
T ss_dssp CCCCCCEEEESC-CSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS--CEEETTEEEEEE
T ss_pred cCCCCEEEEEcC-CCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc--CCeeCCeEEEEE
Confidence 355789999999 999999999999999999999999886 5789999999999999999995 689999999999
Q ss_pred ecccCCCC
Q 007955 446 PYKEKGKV 453 (583)
Q Consensus 446 ~Ak~K~k~ 453 (583)
++.++...
T Consensus 89 ~a~~~~~~ 96 (103)
T 2cqg_A 89 LPNSKQSQ 96 (103)
T ss_dssp CCCTTCCC
T ss_pred ecCCCCcC
Confidence 99887654
No 94
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.61 E-value=4.6e-16 Score=125.76 Aligned_cols=71 Identities=28% Similarity=0.408 Sum_probs=67.2
Q ss_pred EEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEec
Q 007955 375 QIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (583)
Q Consensus 375 tIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~A 447 (583)
+|||+|| ++++++++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++ ++++.|+|+.|.|++|
T Consensus 1 ~l~v~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGL-SVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECC-CSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecC-CCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 6999999 999999999999999999999999876 579999999999999999998 8999999999999875
No 95
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=7.8e-16 Score=134.44 Aligned_cols=78 Identities=19% Similarity=0.358 Sum_probs=72.6
Q ss_pred CCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 007955 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (583)
Q Consensus 371 ~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~ 446 (583)
...++|||+|| ++.+++++|+++|++||+|.+|+|+.| +++|||||+|.+.++|++|+ .||++.|.|+.|.|.+
T Consensus 23 ~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 100 (114)
T 2cq4_A 23 RDARTVFCMQL-AARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQA 100 (114)
T ss_dssp HHHTEEEEESC-CTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEe
Confidence 34689999999 999999999999999999999999976 57999999999999999999 8899999999999999
Q ss_pred cccC
Q 007955 447 YKEK 450 (583)
Q Consensus 447 Ak~K 450 (583)
++++
T Consensus 101 a~~~ 104 (114)
T 2cq4_A 101 SQAE 104 (114)
T ss_dssp HHHH
T ss_pred cCCC
Confidence 8754
No 96
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.61 E-value=5.6e-16 Score=132.32 Aligned_cols=78 Identities=22% Similarity=0.348 Sum_probs=73.8
Q ss_pred cEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEecccCCCC
Q 007955 374 RQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEKGKV 453 (583)
Q Consensus 374 rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~Ak~K~k~ 453 (583)
++|||+|| ++.+|+++|+++|++||+|.+|+|+.+ ++|||||+|.+.++|++|++.|++..++|+.|.|.+++++.+.
T Consensus 1 ~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 78 (101)
T 2hvz_A 1 MKVYVGNL-GTGAGKGELERAFSYYGPLRTVWIARN-PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRR 78 (101)
T ss_dssp CEEEEECC-CSSCSHHHHHHHHHHHCCCSEEEEESS-SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCCS
T ss_pred CEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEeeC-CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCCc
Confidence 48999999 999999999999999999999999997 8999999999999999999999999999999999999887643
No 97
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=6.1e-16 Score=132.32 Aligned_cols=81 Identities=20% Similarity=0.279 Sum_probs=75.3
Q ss_pred CCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 007955 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (583)
Q Consensus 371 ~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~ 446 (583)
...++|||+|| ++.+++++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.||+..|+|+.|.|.+
T Consensus 6 ~~~~~l~V~nl-p~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 84 (104)
T 1p1t_A 6 RSLRSVFVGNI-PYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDN 84 (104)
T ss_dssp HHHSCEEEESC-CTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEE
T ss_pred CCccEEEEeCC-CCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Confidence 34689999999 999999999999999999999999876 4689999999999999999999999999999999999
Q ss_pred cccCCC
Q 007955 447 YKEKGK 452 (583)
Q Consensus 447 Ak~K~k 452 (583)
+.++..
T Consensus 85 a~~~~~ 90 (104)
T 1p1t_A 85 AASEKN 90 (104)
T ss_dssp TTCTTH
T ss_pred CCCccc
Confidence 987654
No 98
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.61 E-value=1.7e-15 Score=139.08 Aligned_cols=83 Identities=17% Similarity=0.170 Sum_probs=77.2
Q ss_pred CCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEE
Q 007955 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (583)
Q Consensus 370 ~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk 445 (583)
....++|||+|| ++.+|+++|+++|++||+|.+|+|+.| ++||||||+|.+.++|++|++.||++.|.|+.|.|.
T Consensus 67 ~~~~~~l~v~nl-~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 145 (158)
T 2kn4_A 67 VEGMTSLKVDNL-TYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 145 (158)
T ss_dssp CCBCCEEEEESC-CTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 355789999999 999999999999999999999999986 589999999999999999999999999999999999
Q ss_pred ecccCCCC
Q 007955 446 PYKEKGKV 453 (583)
Q Consensus 446 ~Ak~K~k~ 453 (583)
++.++...
T Consensus 146 ~a~~~~~~ 153 (158)
T 2kn4_A 146 MARYGRPP 153 (158)
T ss_dssp EECCSSCC
T ss_pred ECCCCCCC
Confidence 99876554
No 99
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=9.4e-16 Score=129.05 Aligned_cols=80 Identities=10% Similarity=0.041 Sum_probs=72.5
Q ss_pred CCCCcEEEEeCCCCCCCCHHHHHHHHhhcCC-ceeEEEeccCCCceEEEEECCHHHHHHHHHhCCC-eEEcCeEEEEEec
Q 007955 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGP-VQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNP-HFVCDARVLVKPY 447 (583)
Q Consensus 370 ~~~~rtIYVgnL~~~~~tEedLre~FsqFG~-V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~mng-~~L~GR~V~Vk~A 447 (583)
....++|||+|| ++++|+++|+++|++||. |..+.|. ++|||||+|.+.++|++|++.||+ ..|+|+.|.|.++
T Consensus 5 ~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~vv~~~~~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 80 (93)
T 2cqh_A 5 SSGMNKLYIGNL-SPAVTADDLRQLFGDRKLPLAGQVLL---KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYS 80 (93)
T ss_dssp CCCCCCEEEECC-CTTCCHHHHHHHHHHTTCCCSSCEEE---ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEEC
T ss_pred CCCCcEEEEeCC-CCCCCHHHHHHHHHHcCCceEEEEEc---CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEc
Confidence 356789999999 999999999999999999 6666663 799999999999999999999999 9999999999999
Q ss_pred ccCCCC
Q 007955 448 KEKGKV 453 (583)
Q Consensus 448 k~K~k~ 453 (583)
+++...
T Consensus 81 ~~~~~~ 86 (93)
T 2cqh_A 81 VSKKLR 86 (93)
T ss_dssp CCCCCC
T ss_pred cCcccc
Confidence 887654
No 100
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.2e-15 Score=134.07 Aligned_cols=79 Identities=13% Similarity=0.012 Sum_probs=73.7
Q ss_pred CCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCc-eeEEEecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEE
Q 007955 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPV-QDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (583)
Q Consensus 370 ~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V-~~VrI~~D---ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk 445 (583)
....++|||+|| ++++|+++|+++|++||.| .+|+|++| ++||||||+|.+.++|++|++. |++.|+|+.|.|.
T Consensus 12 ~~~~~~l~V~nL-p~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 12 NSAKVCAHITNI-PFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CSCCCEEEEESC-CTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCccEEEEeCc-CCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 455789999999 9999999999999999999 99999987 6899999999999999999998 9999999999999
Q ss_pred ecccC
Q 007955 446 PYKEK 450 (583)
Q Consensus 446 ~Ak~K 450 (583)
++.++
T Consensus 90 ~a~~~ 94 (114)
T 2cpy_A 90 VVTLE 94 (114)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 98754
No 101
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=5.2e-15 Score=125.82 Aligned_cols=78 Identities=18% Similarity=0.201 Sum_probs=72.5
Q ss_pred CCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEecccC
Q 007955 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEK 450 (583)
Q Consensus 371 ~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~Ak~K 450 (583)
...++|||+|+ .+|+++|+++|++||+|.+|+|.. +||||||+|.+.++|++|++.||++.|+|+.|.|.++.++
T Consensus 13 ~~~~~l~V~n~---~~t~~~l~~~F~~~G~i~~v~i~~--~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~ 87 (97)
T 1x5p_A 13 RKGNTLYVYGE---DMTPTLLRGAFSPFGNIIDLSMDP--PRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 87 (97)
T ss_dssp CCCSEEEEECS---SCCHHHHHHHHTTTSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSC
T ss_pred CCCCEEEEcCC---CCCHHHHHHHHhhCCCEEEEEecC--CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCC
Confidence 45789999997 799999999999999999999975 8999999999999999999999999999999999999877
Q ss_pred CCC
Q 007955 451 GKV 453 (583)
Q Consensus 451 ~k~ 453 (583)
...
T Consensus 88 ~~~ 90 (97)
T 1x5p_A 88 PML 90 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 102
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.4e-15 Score=131.28 Aligned_cols=82 Identities=13% Similarity=0.096 Sum_probs=75.3
Q ss_pred CCCcEEEEeCCCCCCCCHHHHHHHHhhcCC-ceeEEEe-cc----CCCceEEEEECCHHHHHHHHHhCC--CeEEcCeEE
Q 007955 371 PASRQIYLTFPADSTFREEDVSNYFSIYGP-VQDVRIP-YQ----QKRMFGFVTFVYPETVKIILAKGN--PHFVCDARV 442 (583)
Q Consensus 371 ~~~rtIYVgnL~~~~~tEedLre~FsqFG~-V~~VrI~-~D----ksRGfAFVtF~~~e~A~~Al~~mn--g~~L~GR~V 442 (583)
...++|||+|| ++.+|+++|+++|++||+ |.+|+|+ .+ ++||||||+|.+.++|++|++.|+ +..++|+.|
T Consensus 6 ~~~~~l~V~nL-p~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 6 SGNCRLFIGGI-PKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCSEEEEEECC-CTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred cCCCEEEEeCC-CCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 45789999999 999999999999999999 9999998 44 589999999999999999999996 589999999
Q ss_pred EEEecccCCCC
Q 007955 443 LVKPYKEKGKV 453 (583)
Q Consensus 443 ~Vk~Ak~K~k~ 453 (583)
.|.++.++...
T Consensus 85 ~V~~a~~~~~~ 95 (109)
T 2dis_A 85 AVDWAEPEIDV 95 (109)
T ss_dssp EEEESCSSCST
T ss_pred EEEEcCCCCCc
Confidence 99999887654
No 103
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=9.4e-16 Score=134.33 Aligned_cols=79 Identities=11% Similarity=0.082 Sum_probs=72.2
Q ss_pred CCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEeccCCCceEEEEECCHHHHHHHHHhCCC--eEEcCeEEEEEecc
Q 007955 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNP--HFVCDARVLVKPYK 448 (583)
Q Consensus 371 ~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~mng--~~L~GR~V~Vk~Ak 448 (583)
+..++|||+|| +++++|++|+++|++||+|.+|+|+. .||||||+|.+.++|++|++.|++ ..|+|++|.|.+++
T Consensus 13 ~p~~~l~V~nL-p~~~te~~L~~~F~~fG~V~~v~i~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~ 89 (104)
T 1wex_A 13 SVSPVVHVRGL-CESVVEADLVEALEKFGTICYVMMMP--FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYST 89 (104)
T ss_dssp CCCSEEEEESC-CSSCCHHHHHHHHTTTSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECS
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhCCCEEEEEEEC--CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcc
Confidence 45789999999 99999999999999999999999998 689999999999999999998754 56999999999998
Q ss_pred cCCC
Q 007955 449 EKGK 452 (583)
Q Consensus 449 ~K~k 452 (583)
.+..
T Consensus 90 ~~~~ 93 (104)
T 1wex_A 90 SKRI 93 (104)
T ss_dssp SSSC
T ss_pred Cccc
Confidence 7654
No 104
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.61 E-value=5.3e-16 Score=130.62 Aligned_cols=78 Identities=12% Similarity=0.061 Sum_probs=71.0
Q ss_pred CCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEE
Q 007955 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (583)
Q Consensus 370 ~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk 445 (583)
.+..++|||+|| ++.+|+++|+++|++||.|.+|+++.+ ++||||||+|.++++|++|++.||++.|.|+.|.|.
T Consensus 12 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~ 90 (95)
T 2ek1_A 12 KPGPTVIKVQNM-PFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLS 90 (95)
T ss_dssp ---CEEEEEECC-CTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEE
Confidence 345689999999 999999999999999999999988875 578999999999999999999999999999999999
Q ss_pred ecc
Q 007955 446 PYK 448 (583)
Q Consensus 446 ~Ak 448 (583)
++.
T Consensus 91 ~a~ 93 (95)
T 2ek1_A 91 GPS 93 (95)
T ss_dssp CCC
T ss_pred ecc
Confidence 875
No 105
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.3e-15 Score=131.73 Aligned_cols=80 Identities=15% Similarity=0.148 Sum_probs=73.3
Q ss_pred CCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCcee-EEEecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEE
Q 007955 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQD-VRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (583)
Q Consensus 370 ~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~-VrI~~D---ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk 445 (583)
....++|||+|| ++++|+++|+++|++||.|.+ |+|+.+ ++||||||+|.++++|++|++. +++.|.||.|.|.
T Consensus 12 ~~~~~~l~V~nL-p~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~ 89 (104)
T 1wg5_A 12 TANDGFVRLRGL-PFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIF 89 (104)
T ss_dssp CSCCCEEEEESC-CTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEE
Confidence 356789999999 999999999999999999998 888876 6899999999999999999998 9999999999999
Q ss_pred ecccCC
Q 007955 446 PYKEKG 451 (583)
Q Consensus 446 ~Ak~K~ 451 (583)
++.++.
T Consensus 90 ~~~~~~ 95 (104)
T 1wg5_A 90 KSSRAE 95 (104)
T ss_dssp EECTTT
T ss_pred ECCHHH
Confidence 886543
No 106
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.61 E-value=2.7e-15 Score=128.57 Aligned_cols=78 Identities=17% Similarity=0.360 Sum_probs=72.1
Q ss_pred CCCCCcEEEEeCCCCC-CCCHHHHHHHHhhcCCceeEEEeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEec
Q 007955 369 VNPASRQIYLTFPADS-TFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (583)
Q Consensus 369 ~~~~~rtIYVgnL~~~-~~tEedLre~FsqFG~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~A 447 (583)
..+..++|||+|| ++ .+++++|+++|++||+|.+|+|. ||||||+|.+.++|++|++.||+..++|+.|.|.++
T Consensus 18 ~~~~~~~l~V~nL-p~~~~t~~~L~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 92 (97)
T 2xnq_A 18 GSHMKSRLFIGNL-PLKNVSKEDLFRIFSPYGHIMQINIK----NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVS 92 (97)
T ss_dssp -CCTTCEEEEESC-CSSCCCHHHHHHHHGGGSCEEEEEEC----SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEEC
T ss_pred CCCCCCEEEEeCC-CcccCCHHHHHHHHHhcCCEEEEEEe----CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 3466899999999 87 99999999999999999999984 799999999999999999999999999999999999
Q ss_pred ccCC
Q 007955 448 KEKG 451 (583)
Q Consensus 448 k~K~ 451 (583)
+.+.
T Consensus 93 ~~~~ 96 (97)
T 2xnq_A 93 SSNA 96 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8754
No 107
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=3e-15 Score=125.45 Aligned_cols=79 Identities=16% Similarity=0.189 Sum_probs=73.2
Q ss_pred CCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEeccc
Q 007955 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (583)
Q Consensus 370 ~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~Ak~ 449 (583)
....++|||+|| ++.+|+++|+++|++||+|.+|+|++ +||||+|.+.++|++|++.||++.|+|+.|.|.++++
T Consensus 6 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~v~~~~~~~----~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 80 (90)
T 2dnp_A 6 SGNTWKIFVGNV-SAACTSQELRSLFERRGRVIECDVVK----DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTK 80 (90)
T ss_dssp SCCSCCEEEESC-CTTCCHHHHHHHHHHHSCEEEEEECS----SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHcCCCEEEEEEEC----CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCC
Confidence 456789999999 99999999999999999999999974 6999999999999999999999999999999999987
Q ss_pred CCCC
Q 007955 450 KGKV 453 (583)
Q Consensus 450 K~k~ 453 (583)
+...
T Consensus 81 ~~~~ 84 (90)
T 2dnp_A 81 GQKK 84 (90)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7543
No 108
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=6.3e-16 Score=125.10 Aligned_cols=72 Identities=24% Similarity=0.362 Sum_probs=68.5
Q ss_pred cEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEec
Q 007955 374 RQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (583)
Q Consensus 374 rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~A 447 (583)
++|||+|| ++++++++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.++ +.++|+.|.|++|
T Consensus 1 ~~l~v~nl-p~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGL-SWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESC-CSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 58999999 999999999999999999999999886 579999999999999999999999 9999999999987
No 109
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.61 E-value=2.6e-15 Score=138.22 Aligned_cols=83 Identities=14% Similarity=0.062 Sum_probs=76.8
Q ss_pred CCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 007955 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (583)
Q Consensus 371 ~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~ 446 (583)
...++|||+|| ++.+|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.||++.|+|+.|.|.+
T Consensus 37 ~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 37 KKSCTLYVGNL-SFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTCCEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 45789999999 999999999999999999999999886 4789999999999999999999999999999999999
Q ss_pred cccCCCCc
Q 007955 447 YKEKGKVP 454 (583)
Q Consensus 447 Ak~K~k~~ 454 (583)
++++....
T Consensus 116 a~~~~~~~ 123 (156)
T 1h2v_Z 116 DAGFKEGR 123 (156)
T ss_dssp ESCCCTTC
T ss_pred CCCCCCcC
Confidence 98766543
No 110
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.60 E-value=1.2e-15 Score=133.12 Aligned_cols=79 Identities=18% Similarity=0.294 Sum_probs=74.3
Q ss_pred CCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc-CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEeccc
Q 007955 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ-QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (583)
Q Consensus 371 ~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D-ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~Ak~ 449 (583)
...++|||+|| ++.+|+++|+++|++||.|.+|+|+.+ +++|||||+|.+.++|++|++.||+..++|+.|.|.++.+
T Consensus 6 ~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 84 (115)
T 3lqv_A 6 EVNRILYIRNL-PYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNA 84 (115)
T ss_dssp TCCSEEEEESC-CTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCH
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 44689999999 999999999999999999999999987 6799999999999999999999999999999999999975
Q ss_pred C
Q 007955 450 K 450 (583)
Q Consensus 450 K 450 (583)
+
T Consensus 85 ~ 85 (115)
T 3lqv_A 85 N 85 (115)
T ss_dssp H
T ss_pred C
Confidence 3
No 111
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.60 E-value=3e-16 Score=131.12 Aligned_cols=78 Identities=26% Similarity=0.336 Sum_probs=69.5
Q ss_pred cEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEeccc
Q 007955 374 RQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (583)
Q Consensus 374 rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~Ak~ 449 (583)
++|||+|| +..+++++|+++|++||+|.+|+|+.+ +++|||||+|.+.+ |++|+..||+..++|+.|.|.+|.+
T Consensus 2 ~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~ 79 (90)
T 2ki2_A 2 RNIYVGNL-VYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANP 79 (90)
T ss_dssp EEEEEEEE-CTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC--
T ss_pred cEEEECCC-CCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCC
Confidence 68999999 999999999999999999999999986 57999999999999 9999999999999999999999987
Q ss_pred CCCC
Q 007955 450 KGKV 453 (583)
Q Consensus 450 K~k~ 453 (583)
+...
T Consensus 80 ~~~~ 83 (90)
T 2ki2_A 80 KKSL 83 (90)
T ss_dssp ----
T ss_pred CCCC
Confidence 6543
No 112
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.60 E-value=1.4e-15 Score=139.21 Aligned_cols=81 Identities=20% Similarity=0.340 Sum_probs=76.1
Q ss_pred CCCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEecc
Q 007955 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (583)
Q Consensus 369 ~~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~Ak 448 (583)
.....++|||+|| ++.+|+++|+++|++||+|.+|+|+.+ +||||||+|.+.++|++|++.||+..|+|+.|.|.+++
T Consensus 69 ~~~~~~~l~V~nl-~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 146 (150)
T 2i2y_A 69 SCPLDCKVYVGNL-GNNGNKTELERAFGYYGPLRSVWVARN-PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSN 146 (150)
T ss_dssp SSTTSCEEEEESC-CSCCSCHHHHHHHHHHSCEEEEEECSS-SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECC
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhhCCEEEEEEeeC-CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcC
Confidence 3456799999999 999999999999999999999999987 79999999999999999999999999999999999998
Q ss_pred cCC
Q 007955 449 EKG 451 (583)
Q Consensus 449 ~K~ 451 (583)
++.
T Consensus 147 ~~~ 149 (150)
T 2i2y_A 147 GEK 149 (150)
T ss_dssp CCC
T ss_pred CCC
Confidence 765
No 113
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.60 E-value=2.1e-15 Score=131.92 Aligned_cols=79 Identities=18% Similarity=0.280 Sum_probs=73.1
Q ss_pred CCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEeccc
Q 007955 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (583)
Q Consensus 370 ~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~Ak~ 449 (583)
....++|||+|| ++.+|+++|+++|++||+|.+|+|+ ||||||+|.+.++|++|++.||+..|+|+.|.|.++++
T Consensus 28 ~~~~~~l~V~nL-p~~~t~~~L~~~F~~~G~i~~v~i~----kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 102 (108)
T 2jvo_A 28 ELSNTRLFVRPF-PLDVQESELNEIFGPFGPMKEVKIL----NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKL 102 (108)
T ss_dssp CCSCSEEEECSS-CTTCCHHHHHHHHTTTSCCCEEEEE----TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSC
T ss_pred CCCCCEEEEECC-CCCCCHHHHHHHHHhcCCEEEEEEE----CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 356799999999 9999999999999999999999998 79999999999999999999999999999999999987
Q ss_pred CCCC
Q 007955 450 KGKV 453 (583)
Q Consensus 450 K~k~ 453 (583)
+.+.
T Consensus 103 ~~~r 106 (108)
T 2jvo_A 103 PAKR 106 (108)
T ss_dssp CC--
T ss_pred CCCC
Confidence 7653
No 114
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.60 E-value=6.2e-16 Score=132.68 Aligned_cols=79 Identities=18% Similarity=0.285 Sum_probs=71.0
Q ss_pred CCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc-----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEE
Q 007955 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ-----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (583)
Q Consensus 370 ~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D-----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~V 444 (583)
....++|||+|| ++++++++|+++|++|| |.+|+|+.+ ++||||||+|.+.++|++|+ .|++..|+|+.|.|
T Consensus 16 ~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V 92 (100)
T 2j76_E 16 KSPPYTAFLGNL-PYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRV 92 (100)
T ss_dssp ----CEEEESCC-SSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCC
T ss_pred CCCCcEEEEeCC-CCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEE
Confidence 355799999999 99999999999999999 999999876 47999999999999999999 89999999999999
Q ss_pred EecccCC
Q 007955 445 KPYKEKG 451 (583)
Q Consensus 445 k~Ak~K~ 451 (583)
.+++++.
T Consensus 93 ~~a~~~~ 99 (100)
T 2j76_E 93 DVADQAQ 99 (100)
T ss_dssp EECCCSC
T ss_pred EeccCCC
Confidence 9998764
No 115
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.60 E-value=1.1e-15 Score=140.17 Aligned_cols=80 Identities=18% Similarity=0.088 Sum_probs=73.8
Q ss_pred CCCCCCcEEEEeCCCCCCCCHHHHHHHHhhcCC---ceeEEEecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeE
Q 007955 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGP---VQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDAR 441 (583)
Q Consensus 368 ~~~~~~rtIYVgnL~~~~~tEedLre~FsqFG~---V~~VrI~~D---ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~ 441 (583)
......++|||+|| ++++||++|+++|++||. |.+|+|++| ++||||||+|.++++|++|++ +|++.|+||.
T Consensus 39 ~~~~~~~~lfVgnL-p~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~ 116 (136)
T 2hgl_A 39 PEGGEGFVVKLRGL-PWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRY 116 (136)
T ss_dssp SSCCTTCEEEEESC-CTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSE
T ss_pred CCCCCCCEEEEeCC-CCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEE
Confidence 34456789999999 999999999999999999 899999987 689999999999999999999 8999999999
Q ss_pred EEEEeccc
Q 007955 442 VLVKPYKE 449 (583)
Q Consensus 442 V~Vk~Ak~ 449 (583)
|.|.++.+
T Consensus 117 i~V~~a~~ 124 (136)
T 2hgl_A 117 IEVFKSHR 124 (136)
T ss_dssp EEEEECCH
T ss_pred EEEEECCh
Confidence 99999854
No 116
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.60 E-value=1.3e-15 Score=135.13 Aligned_cols=78 Identities=19% Similarity=0.133 Sum_probs=72.6
Q ss_pred CCCCcEEEEeCCCCCCCCHHHHHHHHhhcCC---ceeEEEecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEE
Q 007955 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGP---VQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVL 443 (583)
Q Consensus 370 ~~~~rtIYVgnL~~~~~tEedLre~FsqFG~---V~~VrI~~D---ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~ 443 (583)
....++|||+|| ++++|+++|+++|++||. |.+|+|++| ++||||||+|.++++|++|++ +|++.|+||.|.
T Consensus 14 ~~~~~~l~V~nL-p~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 91 (118)
T 2db1_A 14 GGEGYVVKLRGL-PWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIE 91 (118)
T ss_dssp BCCCCEEEEESC-CTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEE
T ss_pred CCCCcEEEEeCC-CCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEE
Confidence 355789999999 999999999999999999 899999987 679999999999999999999 799999999999
Q ss_pred EEeccc
Q 007955 444 VKPYKE 449 (583)
Q Consensus 444 Vk~Ak~ 449 (583)
|.++..
T Consensus 92 V~~a~~ 97 (118)
T 2db1_A 92 VFKSHR 97 (118)
T ss_dssp EEEECH
T ss_pred EEECCH
Confidence 999864
No 117
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=3.5e-15 Score=130.05 Aligned_cols=82 Identities=18% Similarity=0.171 Sum_probs=75.2
Q ss_pred CCCcEEEEeCCCCCCCCHHHHHHHHhhcCCc----eeEEEeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 007955 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPV----QDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (583)
Q Consensus 371 ~~~rtIYVgnL~~~~~tEedLre~FsqFG~V----~~VrI~~DksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~ 446 (583)
...++|||+|| ++.+|+++|+++|++||.| ..++++.+++||||||+|.+.++|++|++.||+..|+|+.|.|.+
T Consensus 23 ~~~~~l~V~nL-p~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 23 EPNKVLYLKNL-SPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp SCCSEEEEECC-CTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 45789999999 9999999999999999999 566777668999999999999999999999999999999999999
Q ss_pred cccCCCC
Q 007955 447 YKEKGKV 453 (583)
Q Consensus 447 Ak~K~k~ 453 (583)
++++...
T Consensus 102 a~~~~~~ 108 (115)
T 2cpx_A 102 GKNKKQR 108 (115)
T ss_dssp CCCCSCC
T ss_pred ccCCCCC
Confidence 9887654
No 118
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=3.3e-15 Score=127.54 Aligned_cols=80 Identities=16% Similarity=0.223 Sum_probs=72.3
Q ss_pred CCCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEE
Q 007955 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (583)
Q Consensus 369 ~~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D---ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk 445 (583)
.....++|||+|| ++.+|+++|+++|++||.| +|+.+ ++||||||+|.+.++|++|++.||++.|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 86 (101)
T 2fc9_A 11 WSGESKTLVLSNL-SYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 86 (101)
T ss_dssp CSCCCSEEEEESC-CTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEE
Confidence 4456899999999 9999999999999999987 45554 789999999999999999999999999999999999
Q ss_pred ecccCCC
Q 007955 446 PYKEKGK 452 (583)
Q Consensus 446 ~Ak~K~k 452 (583)
+++++.+
T Consensus 87 ~a~~~~~ 93 (101)
T 2fc9_A 87 LQGPRGS 93 (101)
T ss_dssp ECSSCCC
T ss_pred EcCCCCC
Confidence 9987754
No 119
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.60 E-value=2.3e-15 Score=133.13 Aligned_cols=78 Identities=15% Similarity=0.275 Sum_probs=72.8
Q ss_pred CcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEecc
Q 007955 373 SRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (583)
Q Consensus 373 ~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~Ak 448 (583)
.++|||+|| ++.+|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|+ .||++.|+|+.|.|.+++
T Consensus 36 ~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 36 KRSVYVGNV-DYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HTEEEEEEE-CTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 589999999 999999999999999999999999876 57999999999999999999 899999999999999998
Q ss_pred cCCC
Q 007955 449 EKGK 452 (583)
Q Consensus 449 ~K~k 452 (583)
+...
T Consensus 114 ~~~~ 117 (124)
T 2jwn_A 114 TNMP 117 (124)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 6543
No 120
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.59 E-value=6.4e-16 Score=131.97 Aligned_cols=82 Identities=13% Similarity=0.120 Sum_probs=73.9
Q ss_pred CCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEE
Q 007955 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (583)
Q Consensus 370 ~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk 445 (583)
....++|||+|| ++.+|+++|+++|++||.|.. .++.+ ++||||||+|.+.++|++|++ ||++.|.|+.|.|.
T Consensus 14 ~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~ 90 (101)
T 1fj7_A 14 STTPFNLFIGNL-NPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 90 (101)
T ss_dssp CSCSEEEEEECC-CTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEE
Confidence 345789999999 999999999999999999998 55554 689999999999999999999 99999999999999
Q ss_pred ecccCCCCc
Q 007955 446 PYKEKGKVP 454 (583)
Q Consensus 446 ~Ak~K~k~~ 454 (583)
+++++....
T Consensus 91 ~a~~~~~~~ 99 (101)
T 1fj7_A 91 KPKGRDGTR 99 (101)
T ss_dssp CCSCCCCSS
T ss_pred EcCCCCCCC
Confidence 998876543
No 121
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.59 E-value=8.1e-16 Score=126.70 Aligned_cols=71 Identities=11% Similarity=0.136 Sum_probs=65.8
Q ss_pred CcEEEEeCCCCCCC------CHHHHHHHHhhcCCceeEEEecc--CCCceEEEEECCHHHHHHHHHhCCCeEEcCe-EEE
Q 007955 373 SRQIYLTFPADSTF------REEDVSNYFSIYGPVQDVRIPYQ--QKRMFGFVTFVYPETVKIILAKGNPHFVCDA-RVL 443 (583)
Q Consensus 373 ~rtIYVgnL~~~~~------tEedLre~FsqFG~V~~VrI~~D--ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR-~V~ 443 (583)
.++|||+|| ++.+ ++++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.||+..|+|+ .|.
T Consensus 1 ~~~l~V~nL-p~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 1 DSVIVVDNV-PQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CCEEEEESC-CCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CCEEEEeCC-CCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 379999999 8888 77999999999999999999854 7899999999999999999999999999999 887
Q ss_pred E
Q 007955 444 V 444 (583)
Q Consensus 444 V 444 (583)
|
T Consensus 80 V 80 (81)
T 2krb_A 80 V 80 (81)
T ss_dssp C
T ss_pred e
Confidence 6
No 122
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=7.3e-15 Score=125.15 Aligned_cols=78 Identities=21% Similarity=0.197 Sum_probs=72.6
Q ss_pred CCCCcEEEEeCCCCCCCCHHHHHHHHhhc--CCceeEEEeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEec
Q 007955 370 NPASRQIYLTFPADSTFREEDVSNYFSIY--GPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (583)
Q Consensus 370 ~~~~rtIYVgnL~~~~~tEedLre~FsqF--G~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~A 447 (583)
....++|||+|| ++.+|+++|+++|++| |.|.+|+++ ||||||+|.+.++|++|++.||++.|+|+.|.|.++
T Consensus 12 ~~~~~~l~V~nL-p~~~t~~~l~~~F~~~g~g~v~~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpd_A 12 MSSVKILYVRNL-MLSTSEEMIEKEFNNIKPGAVERVKKI----RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLA 86 (99)
T ss_dssp SSCCCEEEEESC-CTTCCHHHHHHHHHTTSTTCEEEEEEC----SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECC
T ss_pred cCCcCEEEEeCC-CCCCCHHHHHHHHHhcCCcceEEEEEe----CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 356799999999 9999999999999999 999999875 689999999999999999999999999999999999
Q ss_pred ccCCC
Q 007955 448 KEKGK 452 (583)
Q Consensus 448 k~K~k 452 (583)
+++.+
T Consensus 87 ~~~~~ 91 (99)
T 2cpd_A 87 KPVDK 91 (99)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 88765
No 123
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=1.2e-15 Score=136.21 Aligned_cols=80 Identities=14% Similarity=0.140 Sum_probs=72.6
Q ss_pred CCCcEEEEeCCCCCC-CCHHHHHHHHhhcCCceeEEEeccCCCceEEEEECCHHHHHHHHHhCC--CeEEcCeEEEEEec
Q 007955 371 PASRQIYLTFPADST-FREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGN--PHFVCDARVLVKPY 447 (583)
Q Consensus 371 ~~~rtIYVgnL~~~~-~tEedLre~FsqFG~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~mn--g~~L~GR~V~Vk~A 447 (583)
...++|||+|| +++ +||++|+++|++||+|.+|+|++ +||||||+|.+.++|++|++.|+ +..|.||+|+|.++
T Consensus 23 ~p~~~l~V~NL-p~~~~te~~L~~lF~~fG~V~~v~i~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a 99 (112)
T 1x4f_A 23 ELGRVIHLSNL-PHSGYSDSAVLKLAEPYGKIKNYILMR--MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLS 99 (112)
T ss_dssp CCCCEEEEESC-CCSSCCSHHHHTTTTTTSCCSEEEEET--TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCC-CCccCCHHHHHHHHHhcCCEEEEEEec--CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEC
Confidence 45789999999 997 99999999999999999999997 89999999999999999999874 56799999999999
Q ss_pred ccCCCC
Q 007955 448 KEKGKV 453 (583)
Q Consensus 448 k~K~k~ 453 (583)
+.+...
T Consensus 100 ~~~~~~ 105 (112)
T 1x4f_A 100 EKYKKL 105 (112)
T ss_dssp CSCSSS
T ss_pred cccccc
Confidence 876543
No 124
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=2.5e-15 Score=132.82 Aligned_cols=76 Identities=24% Similarity=0.269 Sum_probs=70.4
Q ss_pred CCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEec
Q 007955 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (583)
Q Consensus 371 ~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D---ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~A 447 (583)
....+|||+|| ++++||++|+++|++| .|.+|+|++| ++||||||+|.++++|++|+ .+|++.|.||.|.|..+
T Consensus 14 ~~~~~v~V~nL-p~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 14 PDDLYVSVHGM-PFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPA 90 (109)
T ss_dssp HHHHEEEEECC-CSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 34579999999 9999999999999999 8999999987 68999999999999999999 57999999999999888
Q ss_pred cc
Q 007955 448 KE 449 (583)
Q Consensus 448 k~ 449 (583)
.+
T Consensus 91 ~~ 92 (109)
T 2dnn_A 91 TE 92 (109)
T ss_dssp CH
T ss_pred Cc
Confidence 54
No 125
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.7e-15 Score=131.38 Aligned_cols=81 Identities=17% Similarity=0.103 Sum_probs=72.5
Q ss_pred CCCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEE
Q 007955 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (583)
Q Consensus 369 ~~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D---ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk 445 (583)
.....++|||+|| ++++||++|+++|++||. ++|+|++| ++||||||+|.++++|++|++ +|++.|.||.|.|.
T Consensus 11 ~~~~~~~l~V~nL-p~~~te~~l~~~F~~~G~-~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (102)
T 1wez_A 11 QSTTGHCVHMRGL-PYRATENDIYNFFSPLNP-MRVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELF 87 (102)
T ss_dssp CCSSSCEEEEESC-CTTCCHHHHHHSSCSCCC-SEEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHHcCc-eEEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 3456789999999 999999999999999995 59999987 689999999999999999995 69999999999999
Q ss_pred ecccCCC
Q 007955 446 PYKEKGK 452 (583)
Q Consensus 446 ~Ak~K~k 452 (583)
++.+...
T Consensus 88 ~~~~~~~ 94 (102)
T 1wez_A 88 LNSTAGT 94 (102)
T ss_dssp EECCCCC
T ss_pred ECCCCCC
Confidence 8876553
No 126
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=4.8e-16 Score=128.57 Aligned_cols=77 Identities=14% Similarity=0.185 Sum_probs=71.0
Q ss_pred CCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 007955 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (583)
Q Consensus 371 ~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~ 446 (583)
...++|||+|| ++.+++++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.||+..|.|+.++|.+
T Consensus 3 ~~~~~l~v~nl-p~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 3 SGSSGLYIRGL-QPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCEEEEESC-CTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCcEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 45789999999 999999999999999999999999886 5799999999999999999999999999999988766
Q ss_pred cc
Q 007955 447 YK 448 (583)
Q Consensus 447 Ak 448 (583)
..
T Consensus 82 ~~ 83 (85)
T 1x4e_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 127
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.58 E-value=3.2e-15 Score=126.29 Aligned_cols=82 Identities=13% Similarity=0.084 Sum_probs=74.0
Q ss_pred CCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEeccc
Q 007955 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (583)
Q Consensus 370 ~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~Ak~ 449 (583)
....++|||+|| ++.+++++|+++|++||.|..| ...++++|||||+|.+.++|++|++.|++..|+|+.|.|.++.+
T Consensus 13 ~~~~~~l~V~nL-~~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 90 (96)
T 1fjc_A 13 VRAARTLLAKNL-SFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 90 (96)
T ss_dssp TTGGGEEEEESC-CSSCCHHHHHHHHCSEEEECCE-EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSS
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHhhCCcEEEe-CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCC
Confidence 345789999999 9999999999999999999888 33347899999999999999999999999999999999999988
Q ss_pred CCCC
Q 007955 450 KGKV 453 (583)
Q Consensus 450 K~k~ 453 (583)
+...
T Consensus 91 ~~~~ 94 (96)
T 1fjc_A 91 KGGT 94 (96)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7653
No 128
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.58 E-value=1.7e-15 Score=137.79 Aligned_cols=84 Identities=17% Similarity=0.165 Sum_probs=77.4
Q ss_pred CCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEE
Q 007955 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (583)
Q Consensus 370 ~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk 445 (583)
....++|||+|| ++.+|+++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.||+..|.|+.|.|.
T Consensus 44 ~~~~~~l~V~nL-p~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 122 (135)
T 2lea_A 44 VEGMTSLKVDNL-TYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 122 (135)
T ss_dssp GGGCCCEEEECC-CSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 345789999999 999999999999999999999999876 689999999999999999999999999999999999
Q ss_pred ecccCCCCc
Q 007955 446 PYKEKGKVP 454 (583)
Q Consensus 446 ~Ak~K~k~~ 454 (583)
+++++....
T Consensus 123 ~a~~~~~~~ 131 (135)
T 2lea_A 123 MARYGRPPD 131 (135)
T ss_dssp ECCCCCCCT
T ss_pred ECCCCCCCc
Confidence 998776543
No 129
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.58 E-value=2.2e-15 Score=128.13 Aligned_cols=79 Identities=18% Similarity=0.390 Sum_probs=71.9
Q ss_pred CCCCcEEEEeCCCCC-CCCHHHHHHHHhhcCCceeEEEeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEecc
Q 007955 370 NPASRQIYLTFPADS-TFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (583)
Q Consensus 370 ~~~~rtIYVgnL~~~-~~tEedLre~FsqFG~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~Ak 448 (583)
.+..++|||+|| ++ .+++++|+++|++||+|.+|+|+ ||||||+|.+.++|++|++.||+..+.|+.|.|.+++
T Consensus 7 ~~~~~~l~V~nl-p~~~~t~~~l~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 81 (96)
T 2kvi_A 7 IPPKSRLFIGNL-PLKNVSKEDLFRIFSPYGHIMQINIK----NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSS 81 (96)
T ss_dssp --CCEEEEEESS-TTSCCCHHHHHHHHTTTCCCCEEEEE----TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEE
T ss_pred CCCCCEEEEeCC-CcccCCHHHHHHHHHhcCCEEEEEEe----CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcC
Confidence 356789999999 88 99999999999999999999985 7999999999999999999999999999999999998
Q ss_pred cCCCC
Q 007955 449 EKGKV 453 (583)
Q Consensus 449 ~K~k~ 453 (583)
++...
T Consensus 82 ~~~~~ 86 (96)
T 2kvi_A 82 SNARP 86 (96)
T ss_dssp CCCC-
T ss_pred cCCCC
Confidence 76653
No 130
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=4e-15 Score=125.68 Aligned_cols=80 Identities=14% Similarity=0.113 Sum_probs=74.6
Q ss_pred CCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEE-EeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEeccc
Q 007955 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVR-IPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (583)
Q Consensus 371 ~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~Vr-I~~DksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~Ak~ 449 (583)
...++|||+|| ++.+++++|+++|++||+|.+|+ |+.++..|.|||+|.+.++|++|++.||+..|.|+.|.|.++.+
T Consensus 13 ~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 91 (96)
T 2e44_A 13 QRIRKLQIRNI-PPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPD 91 (96)
T ss_dssp CSCCCEEEEEE-CSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCC
T ss_pred CCCCEEEEEcC-CCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCc
Confidence 44789999999 99999999999999999999995 88887777799999999999999999999999999999999988
Q ss_pred CC
Q 007955 450 KG 451 (583)
Q Consensus 450 K~ 451 (583)
+.
T Consensus 92 ~~ 93 (96)
T 2e44_A 92 EM 93 (96)
T ss_dssp CC
T ss_pred cc
Confidence 74
No 131
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.58 E-value=5.6e-15 Score=128.42 Aligned_cols=77 Identities=14% Similarity=0.304 Sum_probs=71.3
Q ss_pred CCCcEEEEeCCCCCC-CCHHHHHHHHhhcCCceeEEEeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEeccc
Q 007955 371 PASRQIYLTFPADST-FREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (583)
Q Consensus 371 ~~~rtIYVgnL~~~~-~tEedLre~FsqFG~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~Ak~ 449 (583)
...++|||+|| ++. +++++|+++|++||+|.+|+| +||||||+|.+.++|++|++.|++..|+|+.|.|.++++
T Consensus 25 ~~~~~l~V~nl-~~~~~t~~~l~~~F~~~G~v~~v~i----~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 99 (110)
T 1wf1_A 25 SINSRVFIGNL-NTALVKKSDVETIFSKYGRVAGCSV----HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGE 99 (110)
T ss_dssp TCSSEEEECSC-CCSSCCHHHHHHHHGGGSCCSEEEE----ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCC
T ss_pred CCCcEEEEeCC-CcccCCHHHHHHHHHhCCCeEEEEE----eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 34689999999 888 999999999999999999998 689999999999999999999999999999999999975
Q ss_pred CCC
Q 007955 450 KGK 452 (583)
Q Consensus 450 K~k 452 (583)
+..
T Consensus 100 ~~~ 102 (110)
T 1wf1_A 100 PKP 102 (110)
T ss_dssp CCS
T ss_pred CCC
Confidence 443
No 132
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.57 E-value=5.6e-15 Score=123.69 Aligned_cols=77 Identities=12% Similarity=0.109 Sum_probs=71.7
Q ss_pred CCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEecccC
Q 007955 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEK 450 (583)
Q Consensus 371 ~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~Ak~K 450 (583)
...++|||+|| ++.+++++|+++|++| +|.+|+|+ ++||||||+|.++++|++|++.||+..++|++|.|.++..+
T Consensus 3 ~~~~~l~V~nL-p~~~t~~~l~~~F~~~-~v~~~~i~--~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 78 (88)
T 1wg1_A 3 SGSSGILVKNL-PQDSNCQEVHDLLKDY-DLKYCYVD--RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTD 78 (88)
T ss_dssp CCCCCEEEESC-CSSCCHHHHHHHTCSS-CCCCEEEE--GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHhhC-CeEEEEEe--CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCC
Confidence 35689999999 9999999999999999 99999996 59999999999999999999999999999999999998654
Q ss_pred C
Q 007955 451 G 451 (583)
Q Consensus 451 ~ 451 (583)
.
T Consensus 79 ~ 79 (88)
T 1wg1_A 79 A 79 (88)
T ss_dssp C
T ss_pred c
Confidence 3
No 133
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.57 E-value=6e-15 Score=137.57 Aligned_cols=84 Identities=12% Similarity=0.174 Sum_probs=75.4
Q ss_pred CCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEE
Q 007955 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (583)
Q Consensus 370 ~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk 445 (583)
....++|||+|| ++.+++++|+++|++||+|..|.|+.+ +++|||||+|.+.++|++|++.||+..|.|+.|.|.
T Consensus 69 ~~~~~~l~V~nL-p~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 147 (165)
T 1rk8_A 69 SVEGWILFVTSI-HEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 147 (165)
T ss_dssp CC-CEEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 455789999999 999999999999999999999999986 478999999999999999999999999999999999
Q ss_pred ecccCCCCc
Q 007955 446 PYKEKGKVP 454 (583)
Q Consensus 446 ~Ak~K~k~~ 454 (583)
++.++....
T Consensus 148 ~a~~~~~~~ 156 (165)
T 1rk8_A 148 WCFVKGPKR 156 (165)
T ss_dssp ESEECC---
T ss_pred EecCCCCCC
Confidence 998876543
No 134
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.57 E-value=2e-15 Score=145.49 Aligned_cols=79 Identities=20% Similarity=0.402 Sum_probs=74.2
Q ss_pred CCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc--CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEeccc
Q 007955 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ--QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (583)
Q Consensus 372 ~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D--ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~Ak~ 449 (583)
..++|||+|| ++.+|+++|+++|++||.|++|+|++| .+||||||+|.+.++|++|++.||++.|+|+.|.|.+|++
T Consensus 102 ~~~~l~v~nl-~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~ 180 (213)
T 4f02_A 102 GVGNIFIKNL-DKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 180 (213)
T ss_dssp CTTEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred ccccceECCc-ccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence 3579999999 999999999999999999999999987 5799999999999999999999999999999999999986
Q ss_pred CC
Q 007955 450 KG 451 (583)
Q Consensus 450 K~ 451 (583)
+.
T Consensus 181 ~~ 182 (213)
T 4f02_A 181 RK 182 (213)
T ss_dssp HH
T ss_pred Cc
Confidence 53
No 135
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.57 E-value=1.6e-15 Score=122.26 Aligned_cols=71 Identities=30% Similarity=0.469 Sum_probs=67.1
Q ss_pred EEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEec
Q 007955 375 QIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (583)
Q Consensus 375 tIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~A 447 (583)
||||+|| ++.+++++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++. +++.++|+.|.|++|
T Consensus 1 ~l~v~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGL-SPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCC-CSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 6999999 999999999999999999999999886 5799999999999999999997 889999999999875
No 136
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=5.7e-15 Score=132.34 Aligned_cols=78 Identities=12% Similarity=0.102 Sum_probs=71.7
Q ss_pred CCCcEEEE--eCCCCCCCCHHHHHHHHhhcCCceeEEEeccCCCceEEEEECCHHHHHHHHHhCCCeEE-----cCeEEE
Q 007955 371 PASRQIYL--TFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFV-----CDARVL 443 (583)
Q Consensus 371 ~~~rtIYV--gnL~~~~~tEedLre~FsqFG~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~mng~~L-----~GR~V~ 443 (583)
...++||| ||| ++.+||++|+++|++||+|.+|.|+. .||||||+|.+.++|++|++.||++.| .|+.|.
T Consensus 23 ~pt~~L~V~Ng~L-~~~~te~~L~~~F~~fG~v~~v~i~~--~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~ 99 (114)
T 2cq2_A 23 YATQSLVVANGGL-GNGVSRNQLLPVLEKCGLVDALLMPP--NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLY 99 (114)
T ss_dssp SCCSEEEEETCTG-GGTCCHHHHHHHHHHHSCEEEEECCT--TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECE
T ss_pred CCCCEEEEECCCC-CCCCCHHHHHHHHHhcCCeEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEE
Confidence 34688999 889 99999999999999999999999987 689999999999999999999999999 799999
Q ss_pred EEecccCC
Q 007955 444 VKPYKEKG 451 (583)
Q Consensus 444 Vk~Ak~K~ 451 (583)
|.+++...
T Consensus 100 v~~a~~~p 107 (114)
T 2cq2_A 100 LNFVEKVQ 107 (114)
T ss_dssp EEEESCCC
T ss_pred EEecccCc
Confidence 99987544
No 137
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.56 E-value=1.8e-15 Score=131.55 Aligned_cols=78 Identities=15% Similarity=0.069 Sum_probs=72.7
Q ss_pred CCCCcEEEEeCCCCCCCCHHHHHHHHhhcCC---ceeEEEecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEE
Q 007955 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGP---VQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVL 443 (583)
Q Consensus 370 ~~~~rtIYVgnL~~~~~tEedLre~FsqFG~---V~~VrI~~D---ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~ 443 (583)
....++|||+|| ++++|+++|+++|++||. |.+|+|++| ++||||||+|.+.++|++|++ ++++.|+||.|.
T Consensus 8 ~~~~~~l~V~nL-p~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 8 VDDVFLIRAQGL-PWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CSSCCEEEEECC-CSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCccEEEEeCC-CCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 356789999999 999999999999999998 999999987 689999999999999999999 899999999999
Q ss_pred EEeccc
Q 007955 444 VKPYKE 449 (583)
Q Consensus 444 Vk~Ak~ 449 (583)
|.++.+
T Consensus 86 V~~a~~ 91 (107)
T 2lmi_A 86 VYEINN 91 (107)
T ss_dssp CEECCH
T ss_pred EEECCH
Confidence 999865
No 138
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=5.3e-15 Score=128.92 Aligned_cols=81 Identities=19% Similarity=0.301 Sum_probs=74.2
Q ss_pred CCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc---CCCceEEEEECCHHHHHHHHHhCCCeEE--------c
Q 007955 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFV--------C 438 (583)
Q Consensus 370 ~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D---ksRGfAFVtF~~~e~A~~Al~~mng~~L--------~ 438 (583)
....++|||+|| ++.+|+++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.||+..| .
T Consensus 22 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 22 EQDPTNLYISNL-PLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCTTEEEEESC-CTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 345789999999 999999999999999999999999987 5789999999999999999999999999 6
Q ss_pred CeEEEEEecccCC
Q 007955 439 DARVLVKPYKEKG 451 (583)
Q Consensus 439 GR~V~Vk~Ak~K~ 451 (583)
++.|.|+++.++.
T Consensus 101 ~~~l~v~~a~p~~ 113 (114)
T 1x5o_A 101 TEPLLCKFSGPSS 113 (114)
T ss_dssp SSCBEEEECCCSC
T ss_pred CCceeEEccCCCC
Confidence 8889999998653
No 139
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=5.4e-15 Score=123.39 Aligned_cols=78 Identities=24% Similarity=0.387 Sum_probs=68.9
Q ss_pred CCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEecccCC
Q 007955 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEKG 451 (583)
Q Consensus 372 ~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~Ak~K~ 451 (583)
..++|||+|| ++++|+++|+++|++||+|.+|+|+.+ +||||||+|.+.++|++|+.. ...+.|++|.|.++.++.
T Consensus 4 ~~~~l~V~nL-p~~~te~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~~~ 79 (88)
T 1wf0_A 4 GSSGVFVGRC-TGDMTEDELREFFSQYGDVMDVFIPKP-FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEPKH 79 (88)
T ss_dssp CCCEEEEESC-CSSSCHHHHHHHSTTTSCCCEEECCSS-CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCCCC
T ss_pred CCcEEEEeCC-CCCCCHHHHHHHHHHcCCeeEEEEecC-CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCCCC
Confidence 4689999999 999999999999999999999999986 899999999999999865433 456699999999998876
Q ss_pred CC
Q 007955 452 KV 453 (583)
Q Consensus 452 k~ 453 (583)
..
T Consensus 80 ~~ 81 (88)
T 1wf0_A 80 NS 81 (88)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 140
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.55 E-value=7.5e-15 Score=133.26 Aligned_cols=84 Identities=14% Similarity=0.171 Sum_probs=72.7
Q ss_pred CCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeE--------EEec-cCCCceEEEEECCHHHHHHHHHhCCCeEEcCeE
Q 007955 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDV--------RIPY-QQKRMFGFVTFVYPETVKIILAKGNPHFVCDAR 441 (583)
Q Consensus 371 ~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~V--------rI~~-DksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~ 441 (583)
...++|||+|| ++.+|+++|+++|++||.|..| ++.. +++||||||+|.+.++|.+|++.||+..|.|+.
T Consensus 43 ~~~~~l~V~nL-p~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 43 EPNCRIYVKNL-AKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp SCCSEEEEEEE-CTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 44689999999 9999999999999999999874 3333 379999999999999999999999999999999
Q ss_pred EEEEecccCCCCch
Q 007955 442 VLVKPYKEKGKVPD 455 (583)
Q Consensus 442 V~Vk~Ak~K~k~~~ 455 (583)
|.|.+++.+.....
T Consensus 122 l~V~~a~~~~~~~~ 135 (143)
T 3egn_A 122 MVVQFARSARPKQD 135 (143)
T ss_dssp CEEEECCCSCC---
T ss_pred EEEEECCCCCCccC
Confidence 99999987665443
No 141
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.55 E-value=1.1e-14 Score=120.28 Aligned_cols=72 Identities=18% Similarity=0.314 Sum_probs=68.0
Q ss_pred CCCcEEEEeCCCCCCCCHHHHHHHHhhc----C-------CceeEEEeccCCCceEEEEECCHHHHHHHHHhCCCeEEcC
Q 007955 371 PASRQIYLTFPADSTFREEDVSNYFSIY----G-------PVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCD 439 (583)
Q Consensus 371 ~~~rtIYVgnL~~~~~tEedLre~FsqF----G-------~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~mng~~L~G 439 (583)
...++|||+|| ++++++++|+++|++| | +|.+|+++. .||||||+|.+.++|++|+ .||+..|+|
T Consensus 4 ~~~~~l~V~nL-p~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~--~kg~afV~f~~~~~a~~A~-~l~g~~~~g 79 (87)
T 2hzc_A 4 GSARRLYVGNI-PFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ--DKNFAFLEFRSVDETTQAM-AFDGIIFQG 79 (87)
T ss_dssp GGGGEEEEESC-CTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECS--SSSEEEEEESSHHHHHHHG-GGTTCEETT
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecC--CCcEEEEEcCCHHHHHHHH-hcCCCEECC
Confidence 45789999999 9999999999999999 8 999999997 6999999999999999999 999999999
Q ss_pred eEEEEEe
Q 007955 440 ARVLVKP 446 (583)
Q Consensus 440 R~V~Vk~ 446 (583)
+.|.|.+
T Consensus 80 ~~l~V~r 86 (87)
T 2hzc_A 80 QSLKIRR 86 (87)
T ss_dssp EECEEEC
T ss_pred eEEEEeC
Confidence 9999974
No 142
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.55 E-value=3.7e-15 Score=147.17 Aligned_cols=78 Identities=13% Similarity=0.150 Sum_probs=72.8
Q ss_pred CCcEEEEeCCCCCCCCHHHHHHHHhhcC--CceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEE
Q 007955 372 ASRQIYLTFPADSTFREEDVSNYFSIYG--PVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (583)
Q Consensus 372 ~~rtIYVgnL~~~~~tEedLre~FsqFG--~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk 445 (583)
..++|||+|| ++.+||++|+++|++|| +|++|+|++| ++||||||+|.+.++|++||+.||++.|+|+.|+|.
T Consensus 67 ~~~~lfVgnL-~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~ 145 (229)
T 3q2s_C 67 KRIALYIGNL-TWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVT 145 (229)
T ss_dssp --CEEEEESC-CTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEE
T ss_pred CccEEEEeCC-CCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEE
Confidence 4679999999 99999999999999999 9999999987 589999999999999999999999999999999999
Q ss_pred ecccC
Q 007955 446 PYKEK 450 (583)
Q Consensus 446 ~Ak~K 450 (583)
+++++
T Consensus 146 ~a~~~ 150 (229)
T 3q2s_C 146 PVNKQ 150 (229)
T ss_dssp ECCHH
T ss_pred ECCCC
Confidence 99754
No 143
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.55 E-value=1.1e-14 Score=138.27 Aligned_cols=80 Identities=9% Similarity=0.063 Sum_probs=73.9
Q ss_pred CCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEeccCCCceEEEEECCHHHHHHHHHhCCCeEEcC--eEEEEEeccc
Q 007955 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCD--ARVLVKPYKE 449 (583)
Q Consensus 372 ~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~mng~~L~G--R~V~Vk~Ak~ 449 (583)
...+|||+|| ++.+|+++|+++|++||+|++|+|..++++|||||+|.+.++|++|++.||+..|.| ++|+|.++++
T Consensus 45 ~vl~l~VgNL-~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~ 123 (164)
T 1sjr_A 45 PVLRIIVENL-FYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 123 (164)
T ss_dssp CEEEEEECSC-CSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSS
T ss_pred ceEEEEEeCc-CCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecC
Confidence 3568999999 999999999999999999999999876678999999999999999999999999976 9999999988
Q ss_pred CCC
Q 007955 450 KGK 452 (583)
Q Consensus 450 K~k 452 (583)
+..
T Consensus 124 ~~l 126 (164)
T 1sjr_A 124 TSL 126 (164)
T ss_dssp SSC
T ss_pred Ccc
Confidence 753
No 144
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.6e-15 Score=134.93 Aligned_cols=80 Identities=21% Similarity=0.247 Sum_probs=71.6
Q ss_pred CCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEE
Q 007955 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (583)
Q Consensus 370 ~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk 445 (583)
....++|||+|| ++++|+++|+++|++||.|.+|.++.+ +++|||||+|.+.++|++|++ ||++.|+|+.|.|.
T Consensus 22 ~~~~~~l~V~nL-p~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 22 HEAGFCVYLKGL-PFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVH 99 (124)
T ss_dssp CCCCCEEEEECC-CTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEE
T ss_pred CCCCcEEEEeCC-CCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 345689999999 999999999999999999998555543 689999999999999999999 89999999999999
Q ss_pred ecccCC
Q 007955 446 PYKEKG 451 (583)
Q Consensus 446 ~Ak~K~ 451 (583)
++.++.
T Consensus 100 ~a~~~~ 105 (124)
T 1wel_A 100 PITKKG 105 (124)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 987643
No 145
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=1.7e-14 Score=121.94 Aligned_cols=79 Identities=20% Similarity=0.328 Sum_probs=68.8
Q ss_pred CCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEecccC
Q 007955 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEK 450 (583)
Q Consensus 371 ~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~Ak~K 450 (583)
...++|||+|| ++++|+++|+++|++||+|.+|.+.....+ ||||+|.+.++|++|++ ||++.|+|+.|.|.++.++
T Consensus 6 ~~~~~l~V~nl-~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~-~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~ 82 (94)
T 2e5g_A 6 SGLRSVFVSGF-PRGVDSAQLSEYFLAFGPVASVVMDKDKGV-FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQK 82 (94)
T ss_dssp TTCCEEEEECC-CTTCCHHHHHHHGGGTSCEEEEEECSSSCC-EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCS
T ss_pred CCCCEEEEECC-CCCCCHHHHHHHHHhcCCeEEEEEcCCCCc-EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcC
Confidence 45689999999 999999999999999999999822222233 99999999999999999 9999999999999988766
Q ss_pred CC
Q 007955 451 GK 452 (583)
Q Consensus 451 ~k 452 (583)
..
T Consensus 83 ~~ 84 (94)
T 2e5g_A 83 EF 84 (94)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 146
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.55 E-value=4.4e-15 Score=126.97 Aligned_cols=80 Identities=20% Similarity=0.378 Sum_probs=73.0
Q ss_pred CCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEec
Q 007955 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (583)
Q Consensus 371 ~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D---ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~A 447 (583)
...++|||+|| ++.+++++|+++|++||+|.+|+|+.| ++||||||+|.+.++|++|++ +++.|+|+.|.|.++
T Consensus 7 ~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 7 IMPNTVFVGGI-DVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEECC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 34689999999 999999999999999999999999986 578999999999999999999 899999999999999
Q ss_pred ccCCCC
Q 007955 448 KEKGKV 453 (583)
Q Consensus 448 k~K~k~ 453 (583)
.++...
T Consensus 84 ~~~~~~ 89 (102)
T 2xs2_A 84 IRKQNL 89 (102)
T ss_dssp EECC--
T ss_pred CcCcch
Confidence 877654
No 147
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=2.1e-14 Score=122.56 Aligned_cols=81 Identities=21% Similarity=0.192 Sum_probs=71.8
Q ss_pred CCCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEE
Q 007955 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (583)
Q Consensus 369 ~~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~V 444 (583)
.....++|||+|| ++.+|+++|+++|+.|+ +|+|+.+ +++|||||+|.+.++|++|++.||++.|.|+.|.|
T Consensus 11 ~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2fc8_A 11 RSQPSKTLFVKGL-SEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTL 86 (102)
T ss_dssp SSCCCSSEEEECC-CTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEeCC-CCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 3456799999999 99999999999999884 5666665 57899999999999999999999999999999999
Q ss_pred EecccCCCC
Q 007955 445 KPYKEKGKV 453 (583)
Q Consensus 445 k~Ak~K~k~ 453 (583)
.+++++...
T Consensus 87 ~~a~~~~~~ 95 (102)
T 2fc8_A 87 DWAKPKGEG 95 (102)
T ss_dssp EECCCCCSS
T ss_pred EEecCCCCC
Confidence 999887653
No 148
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=7e-15 Score=132.76 Aligned_cols=77 Identities=14% Similarity=0.106 Sum_probs=70.6
Q ss_pred CCCcEEEEeCCCCCCCCHHHHHHHHhhcCCc----eeEEEecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEE
Q 007955 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPV----QDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVL 443 (583)
Q Consensus 371 ~~~rtIYVgnL~~~~~tEedLre~FsqFG~V----~~VrI~~D---ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~ 443 (583)
....+|||+|| ++++||++|+++|++||+| .+|+|++| ++||||||+|.++++|++|++. |++.|.||.|.
T Consensus 21 ~~~~~v~V~nL-p~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGL-PFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSC-CTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 34689999999 9999999999999999986 69999886 6899999999999999999998 99999999999
Q ss_pred EEeccc
Q 007955 444 VKPYKE 449 (583)
Q Consensus 444 Vk~Ak~ 449 (583)
|..+.+
T Consensus 99 V~~a~~ 104 (123)
T 2dha_A 99 LFRSTA 104 (123)
T ss_dssp CEEECH
T ss_pred EEECCH
Confidence 998753
No 149
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.28 E-value=7.8e-16 Score=135.04 Aligned_cols=81 Identities=14% Similarity=0.162 Sum_probs=75.4
Q ss_pred CCCcEEEEeCCCCCCCCHHHHHHHHhhcCCcee--------EEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEc
Q 007955 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQD--------VRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVC 438 (583)
Q Consensus 371 ~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~--------VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~ 438 (583)
...++|||+|| ++.+++++|+++|++||.|.+ |+|+.| ++||||||+|.+.++|++|++.||+..|.
T Consensus 5 ~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 5 SDNNTIFVQGL-GENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 45789999999 999999999999999999999 889876 57999999999999999999999999999
Q ss_pred CeEEEEEecccCCC
Q 007955 439 DARVLVKPYKEKGK 452 (583)
Q Consensus 439 GR~V~Vk~Ak~K~k 452 (583)
|+.|.|.+++++..
T Consensus 84 g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 84 GNPIKVSFATRRAD 97 (116)
Confidence 99999999987654
No 150
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.52 E-value=2.1e-14 Score=128.52 Aligned_cols=78 Identities=18% Similarity=0.201 Sum_probs=72.1
Q ss_pred CCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEecccC
Q 007955 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEK 450 (583)
Q Consensus 371 ~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~Ak~K 450 (583)
...++|||+|+ ++|+++|+++|++||+|.+|+|+. +||||||+|.+.++|++|++.||+..|+|+.|.|.+++++
T Consensus 37 ~~~~~lfVgnl---~~te~~L~~~F~~~G~I~~v~i~~--~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~ 111 (121)
T 2bz2_A 37 RKGNTLYVYGE---DMTPTLLRGAFSPFGNIIDLSMDP--PRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 111 (121)
T ss_dssp CCCCEEEEECS---SCCHHHHHHHHSTTCCCSCEEEET--TTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSS
T ss_pred CCCCEEEEcCC---CCCHHHHHHHHHccCCEEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCC
Confidence 45789999997 599999999999999999999985 9999999999999999999999999999999999999877
Q ss_pred CCC
Q 007955 451 GKV 453 (583)
Q Consensus 451 ~k~ 453 (583)
...
T Consensus 112 ~~~ 114 (121)
T 2bz2_A 112 PML 114 (121)
T ss_dssp CC-
T ss_pred CCC
Confidence 543
No 151
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.52 E-value=3.4e-14 Score=137.71 Aligned_cols=78 Identities=22% Similarity=0.216 Sum_probs=73.1
Q ss_pred CCcEEEEeCCCC-CCCCHHHHHHHHhhcCCceeEEEeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEecccC
Q 007955 372 ASRQIYLTFPAD-STFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEK 450 (583)
Q Consensus 372 ~~rtIYVgnL~~-~~~tEedLre~FsqFG~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~Ak~K 450 (583)
..++|||+|| + +.+|+++|+++|++||.|.+|+|+++ +||||||+|.+.++|++|++.||++.|.|+.|.|.+++.+
T Consensus 3 ~~~~l~V~nL-~~~~~~~~~L~~~F~~~G~v~~v~i~~~-~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~ 80 (205)
T 3tyt_A 3 DSPVLMVYGL-DQSKMNCDRVFNVFCLYGNVEKVKFMKS-KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQP 80 (205)
T ss_dssp CCSEEEEECC-CTTTCCHHHHHHHHTTTSCEEEEEECTT-STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCS
T ss_pred CCCEEEEeCC-CcccCCHHHHHHHHHhcCCeEEEEEecC-CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCC
Confidence 4689999999 7 89999999999999999999999986 5899999999999999999999999999999999998754
Q ss_pred C
Q 007955 451 G 451 (583)
Q Consensus 451 ~ 451 (583)
.
T Consensus 81 ~ 81 (205)
T 3tyt_A 81 A 81 (205)
T ss_dssp C
T ss_pred c
Confidence 3
No 152
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.51 E-value=3.6e-14 Score=128.38 Aligned_cols=79 Identities=13% Similarity=0.282 Sum_probs=73.8
Q ss_pred CCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEec
Q 007955 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (583)
Q Consensus 372 ~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~A 447 (583)
++++|||+|| +.++++++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.+++..+.|+.|.|.++
T Consensus 1 s~~~l~v~nl-p~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 79 (167)
T 1fxl_A 1 SKTNLIVNYL-PQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 79 (167)
T ss_dssp CCSEEEEESC-CTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CcceEEEcCC-CCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEec
Confidence 3689999999 999999999999999999999999886 47799999999999999999999999999999999999
Q ss_pred ccCC
Q 007955 448 KEKG 451 (583)
Q Consensus 448 k~K~ 451 (583)
.++.
T Consensus 80 ~~~~ 83 (167)
T 1fxl_A 80 RPSS 83 (167)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 7654
No 153
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.51 E-value=1.3e-14 Score=128.04 Aligned_cols=77 Identities=14% Similarity=0.069 Sum_probs=67.3
Q ss_pred CCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeE-----EEEE
Q 007955 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDAR-----VLVK 445 (583)
Q Consensus 371 ~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~-----V~Vk 445 (583)
....+|||+|| ++++|+++|+++|++||+|.+|.|+.+ |||||+|.+.++|++|++.||+..|+|+. |+|.
T Consensus 14 r~~~~l~V~nL-p~~~t~~~l~~~F~~~G~v~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~ 89 (115)
T 3beg_B 14 RSENRVVVSGL-PPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 89 (115)
T ss_dssp ---CCEEEEEC-CSSCCTTHHHHHHGGGSCEEEEEECTT---SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEE
T ss_pred CCCcEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEecC---CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEec
Confidence 35689999999 999999999999999999999999985 99999999999999999999999999998 7777
Q ss_pred ecccCC
Q 007955 446 PYKEKG 451 (583)
Q Consensus 446 ~Ak~K~ 451 (583)
.+.++.
T Consensus 90 ~~~~~~ 95 (115)
T 3beg_B 90 VDGPRS 95 (115)
T ss_dssp ECC---
T ss_pred cCCCCC
Confidence 666543
No 154
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.51 E-value=3.2e-14 Score=137.13 Aligned_cols=79 Identities=16% Similarity=0.201 Sum_probs=73.3
Q ss_pred CCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEec
Q 007955 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (583)
Q Consensus 372 ~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~A 447 (583)
..+||||||| ++++||++|+++|++||+|++|+|++| +++|||||+|.+.++|++|++.+++..+.|+.|.|.++
T Consensus 14 p~~tlfVgnL-p~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 14 PMASLYVGDL-HPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp -CCEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCcEEEEeCC-CCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 3589999999 999999999999999999999999986 58999999999999999999999999999999999988
Q ss_pred ccCC
Q 007955 448 KEKG 451 (583)
Q Consensus 448 k~K~ 451 (583)
....
T Consensus 93 ~~~~ 96 (213)
T 4f02_A 93 QRDP 96 (213)
T ss_dssp CCCT
T ss_pred cccc
Confidence 6543
No 155
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.51 E-value=3.5e-14 Score=135.08 Aligned_cols=82 Identities=9% Similarity=0.071 Sum_probs=76.0
Q ss_pred CCCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEE
Q 007955 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (583)
Q Consensus 369 ~~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D---ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk 445 (583)
.....++|||+|| ++.+++++|+++|++||+|++|.|+.+ +++|||||+|.+.++|++|++.||+..|+|+.|.|.
T Consensus 84 ~~~~~~~l~V~nL-p~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 84 GVETGAKLLVSNL-DFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SCTTCEEEEEECC-CSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3456789999999 999999999999999999999999986 689999999999999999999999999999999999
Q ss_pred ecccCC
Q 007955 446 PYKEKG 451 (583)
Q Consensus 446 ~Ak~K~ 451 (583)
++....
T Consensus 163 ~a~~~~ 168 (177)
T 2f3j_A 163 LVASQI 168 (177)
T ss_dssp EESSGG
T ss_pred EecCCC
Confidence 987644
No 156
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.51 E-value=3.7e-14 Score=128.94 Aligned_cols=80 Identities=16% Similarity=0.261 Sum_probs=74.4
Q ss_pred CCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEec
Q 007955 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (583)
Q Consensus 372 ~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~A 447 (583)
..++|||+|| +.++++++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.+++..+.|+.|.|.++
T Consensus 2 ~~~~l~v~nl-p~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 80 (168)
T 1b7f_A 2 SNTNLIVNYL-PQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYA 80 (168)
T ss_dssp CCSEEEEECC-CTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CccEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEec
Confidence 3689999999 999999999999999999999999876 47899999999999999999999999999999999999
Q ss_pred ccCCC
Q 007955 448 KEKGK 452 (583)
Q Consensus 448 k~K~k 452 (583)
.++..
T Consensus 81 ~~~~~ 85 (168)
T 1b7f_A 81 RPGGE 85 (168)
T ss_dssp CCCSS
T ss_pred CCCcc
Confidence 86553
No 157
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.51 E-value=5.8e-15 Score=136.05 Aligned_cols=80 Identities=14% Similarity=0.050 Sum_probs=72.5
Q ss_pred CCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEec
Q 007955 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (583)
Q Consensus 371 ~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D---ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~A 447 (583)
...++|||+|| ++++||++|+++|++|| |++|+|++| ++||||||+|.++++|++|+ .+|++.|.||.|.|..+
T Consensus 44 ~~~~~lfV~nL-p~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 44 TTGHCVHMRGL-PYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLN 120 (139)
T ss_dssp -CCCCEECCSC-CTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEEC
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEEC
Confidence 45689999999 99999999999999999 779999987 68999999999999999999 77999999999999998
Q ss_pred ccCCCC
Q 007955 448 KEKGKV 453 (583)
Q Consensus 448 k~K~k~ 453 (583)
.++...
T Consensus 121 ~~~~~~ 126 (139)
T 2hgn_A 121 STTGAS 126 (139)
T ss_dssp CCSCC-
T ss_pred CCCCCC
Confidence 876653
No 158
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.50 E-value=3.3e-14 Score=128.49 Aligned_cols=78 Identities=19% Similarity=0.335 Sum_probs=73.2
Q ss_pred cEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEecccC
Q 007955 374 RQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEK 450 (583)
Q Consensus 374 rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D---ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~Ak~K 450 (583)
|+|||+|| +.++|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.+++..+.|+.|.|.++.++
T Consensus 1 R~l~V~nl-p~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNL-DKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEE-ETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCC-CCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 68999999 999999999999999999999999887 57899999999999999999999999999999999998765
Q ss_pred CC
Q 007955 451 GK 452 (583)
Q Consensus 451 ~k 452 (583)
..
T Consensus 80 ~~ 81 (166)
T 3md3_A 80 QQ 81 (166)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 159
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=4.5e-14 Score=123.94 Aligned_cols=76 Identities=16% Similarity=0.268 Sum_probs=66.3
Q ss_pred CCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc-------CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEE
Q 007955 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ-------QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVL 443 (583)
Q Consensus 371 ~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D-------ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~ 443 (583)
...++|||+|| ++++|+++|+++|++||+|. +.++.+ ++||||||+|.++++|++|++.| +.++|+.+.
T Consensus 6 ~~~~~lfVgnL-p~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~--~~~~G~~~~ 81 (114)
T 2dnl_A 6 SGSRKVFVGGL-PPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC--LEEDGKLYL 81 (114)
T ss_dssp SCCCCEEEECC-CTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS--EEETTEEEE
T ss_pred CCCCEEEEcCC-CCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh--hhcCCcEEE
Confidence 45789999999 99999999999999999999 888774 56999999999999999999998 457888888
Q ss_pred EEecccC
Q 007955 444 VKPYKEK 450 (583)
Q Consensus 444 Vk~Ak~K 450 (583)
|..+.+.
T Consensus 82 ~~~~~~~ 88 (114)
T 2dnl_A 82 CVSSPTI 88 (114)
T ss_dssp EECCSSS
T ss_pred eccCCCc
Confidence 7765443
No 160
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.50 E-value=1.4e-14 Score=131.66 Aligned_cols=76 Identities=16% Similarity=0.160 Sum_probs=69.6
Q ss_pred CCCcEEEEeCCCCCCCCHHHHHHHHhhcCCce--eEEEecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEE
Q 007955 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQ--DVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (583)
Q Consensus 371 ~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~--~VrI~~D---ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk 445 (583)
...++|||+|| ++++||++|+++|++| .|+ +|+|++| ++||||||+|.++++|++|++. ++..|+||.|.|.
T Consensus 40 ~~~~~lfVgnL-p~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V~ 116 (126)
T 2hgm_A 40 ANDGFVRLRGL-PFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIGHRYIEVF 116 (126)
T ss_dssp SSCCEEEEECC-CTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCCE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEEE
Confidence 45689999999 9999999999999999 677 9999987 6899999999999999999997 7799999999998
Q ss_pred eccc
Q 007955 446 PYKE 449 (583)
Q Consensus 446 ~Ak~ 449 (583)
++.+
T Consensus 117 ~a~~ 120 (126)
T 2hgm_A 117 KSSQ 120 (126)
T ss_dssp EECH
T ss_pred ECCH
Confidence 8754
No 161
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.49 E-value=8.5e-14 Score=125.78 Aligned_cols=79 Identities=10% Similarity=0.175 Sum_probs=73.9
Q ss_pred CCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEE
Q 007955 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (583)
Q Consensus 370 ~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk 445 (583)
....++|||+|| +..+|+++|+++|++||.|.+|+|+.+ +++|||||+|.+.++|.+|++.||+..++|+.|.|.
T Consensus 84 ~~~~~~l~v~nl-~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 162 (166)
T 3md3_A 84 SDDTFNLFVGDL-NVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRIN 162 (166)
T ss_dssp CTTCEEEEEESC-CTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCceEEECCC-CCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Confidence 456789999999 999999999999999999999999876 579999999999999999999999999999999999
Q ss_pred eccc
Q 007955 446 PYKE 449 (583)
Q Consensus 446 ~Ak~ 449 (583)
+|++
T Consensus 163 ~a~~ 166 (166)
T 3md3_A 163 WAAK 166 (166)
T ss_dssp ESCC
T ss_pred ecCC
Confidence 9863
No 162
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.49 E-value=1.7e-13 Score=124.20 Aligned_cols=76 Identities=12% Similarity=-0.005 Sum_probs=69.4
Q ss_pred cEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEeccCCCce-EEEEECCHHHHHHHHHhCCCeEEcC--eEEEEEecccC
Q 007955 374 RQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMF-GFVTFVYPETVKIILAKGNPHFVCD--ARVLVKPYKEK 450 (583)
Q Consensus 374 rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~DksRGf-AFVtF~~~e~A~~Al~~mng~~L~G--R~V~Vk~Ak~K 450 (583)
-.|||+|| ++.+|+++|+++|++||+|.+|+|+. + .|| |||+|.+.++|..|++.|||..|.| +.|+|.+|+++
T Consensus 26 l~l~V~NL-~~~vt~~~L~~~Fs~yG~V~~v~i~~-~-~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~ 102 (124)
T 2e5i_A 26 LLLSIQNP-LYPITVDVLYTVCNPVGKVQRIVIFK-R-NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPT 102 (124)
T ss_dssp EEEEEESC-CSCCCHHHHHHHHTTTSCEEEEEEEE-S-SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCS
T ss_pred EEEEEcCc-CCCCCHHHHHHHHHhcCCEEEEEEEe-C-CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCC
Confidence 35789999 99999999999999999999999976 3 597 9999999999999999999999988 69999999877
Q ss_pred CC
Q 007955 451 GK 452 (583)
Q Consensus 451 ~k 452 (583)
.-
T Consensus 103 ~l 104 (124)
T 2e5i_A 103 RL 104 (124)
T ss_dssp CC
T ss_pred cc
Confidence 53
No 163
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.49 E-value=3.7e-14 Score=129.15 Aligned_cols=77 Identities=21% Similarity=0.367 Sum_probs=72.4
Q ss_pred CCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEec
Q 007955 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (583)
Q Consensus 372 ~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~A 447 (583)
..++|||+|| ++.+|+++|+++|++||+|.+|+|+.| +++|||||+|.+.++|.+|++ +++..++|+.|.|.+|
T Consensus 86 ~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a 163 (167)
T 2cjk_A 86 KTGKIFVGGI-GPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRA 163 (167)
T ss_dssp HCEEEEEEEE-CTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEEC
T ss_pred CCCeEEECCC-CCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeec
Confidence 3579999999 999999999999999999999999886 579999999999999999998 7999999999999999
Q ss_pred ccC
Q 007955 448 KEK 450 (583)
Q Consensus 448 k~K 450 (583)
.+|
T Consensus 164 ~pk 166 (167)
T 2cjk_A 164 EPR 166 (167)
T ss_dssp CCC
T ss_pred CCC
Confidence 876
No 164
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.48 E-value=9.9e-14 Score=127.00 Aligned_cols=79 Identities=10% Similarity=0.085 Sum_probs=72.3
Q ss_pred CCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEeccCCCce-EEEEECCHHHHHHHHHhCCCeEEcC--eEEEEEecc
Q 007955 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMF-GFVTFVYPETVKIILAKGNPHFVCD--ARVLVKPYK 448 (583)
Q Consensus 372 ~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~DksRGf-AFVtF~~~e~A~~Al~~mng~~L~G--R~V~Vk~Ak 448 (583)
..-+|||+|| ++.+|+++|+++|++||+|.+|+|+. ++||| |||+|.+.++|++|++.|||..|.| +.|+|.+++
T Consensus 27 ~VL~I~V~NL-~~~vte~~L~~lFs~yG~V~~V~i~~-~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak 104 (130)
T 3zzy_A 27 PVLRIIVENL-FYPVTLDVLHQIFSKFGTVLKIITFT-KNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 104 (130)
T ss_dssp SEEEEEEESC-CSCCCHHHHHHHHTTSSCEEEEEEEE-ETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECS
T ss_pred ceEEEEECCC-CCCCCHHHHHHHHhCcCCEEEEEEEc-CCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecC
Confidence 3468999999 99999999999999999999999876 46788 9999999999999999999999998 999999998
Q ss_pred cCCC
Q 007955 449 EKGK 452 (583)
Q Consensus 449 ~K~k 452 (583)
++.-
T Consensus 105 ~~~l 108 (130)
T 3zzy_A 105 LTSL 108 (130)
T ss_dssp CSSC
T ss_pred CCce
Confidence 7653
No 165
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.48 E-value=9.2e-14 Score=129.68 Aligned_cols=81 Identities=22% Similarity=0.306 Sum_probs=73.0
Q ss_pred CCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEE
Q 007955 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (583)
Q Consensus 370 ~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk 445 (583)
....++|||+|| ++++|+++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++. +++.+.|+.|.|.
T Consensus 10 ~~~~~~l~V~nL-p~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~ 87 (196)
T 1l3k_A 10 PEQLRKLFIGGL-SFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPK 87 (196)
T ss_dssp CGGGGEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeee
Confidence 356789999999 999999999999999999999999986 4799999999999999999988 9999999999999
Q ss_pred ecccCCC
Q 007955 446 PYKEKGK 452 (583)
Q Consensus 446 ~Ak~K~k 452 (583)
++..+..
T Consensus 88 ~~~~~~~ 94 (196)
T 1l3k_A 88 RAVSRED 94 (196)
T ss_dssp ECCC---
T ss_pred cccCccc
Confidence 9876543
No 166
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.48 E-value=6.6e-14 Score=136.35 Aligned_cols=83 Identities=14% Similarity=0.286 Sum_probs=76.5
Q ss_pred CCCCCCCCcEEEEeCCCCC-CCCHHHHHHHHhhcCCceeEEEeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEE
Q 007955 366 AGIVNPASRQIYLTFPADS-TFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (583)
Q Consensus 366 ~g~~~~~~rtIYVgnL~~~-~~tEedLre~FsqFG~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~V 444 (583)
.+...+..++|||+|| ++ ++++++|+++|++||+|.+|+|+.++ +|||||+|.+.++|++|++.|++..|.|+.|.|
T Consensus 27 p~~~~~~~~~l~V~nL-p~~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v 104 (229)
T 2adc_A 27 PGLAGAGNSVLLVSNL-NPERVTPQSLFILFGVYGDVQRVKILFNK-KENALVQMADGNQAQLAMSHLNGHKLHGKPIRI 104 (229)
T ss_dssp GGGGCCCCSEEEEESC-CTTTCCHHHHHHHHHHHTCEEEEEECCTT-SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEE
T ss_pred CCCCCCCCCEEEEeCC-CcccCCHHHHHHHHHhCCCeEEEEEEECC-CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 3445567899999999 87 99999999999999999999999975 899999999999999999999999999999999
Q ss_pred EecccC
Q 007955 445 KPYKEK 450 (583)
Q Consensus 445 k~Ak~K 450 (583)
.++..+
T Consensus 105 ~~a~~~ 110 (229)
T 2adc_A 105 TLSKHQ 110 (229)
T ss_dssp ECCSCC
T ss_pred EEecCc
Confidence 999765
No 167
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.48 E-value=1e-13 Score=129.62 Aligned_cols=82 Identities=13% Similarity=0.263 Sum_probs=76.4
Q ss_pred CCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 007955 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (583)
Q Consensus 371 ~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~ 446 (583)
...++|||+|| ++.+++++|+++|++||.|.+|+|+.+ +++|||||+|.+.++|++|++.||+..|+|+.|.|.+
T Consensus 112 ~~~~~l~v~nl-~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 190 (198)
T 2yh0_A 112 DSAHKLFIGGL-PNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 190 (198)
T ss_dssp CCCCEEEEECC-CTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 56789999999 999999999999999999999999876 4699999999999999999999999999999999999
Q ss_pred cccCCCC
Q 007955 447 YKEKGKV 453 (583)
Q Consensus 447 Ak~K~k~ 453 (583)
+.++.+.
T Consensus 191 a~~~~~~ 197 (198)
T 2yh0_A 191 ASVGAKN 197 (198)
T ss_dssp SCCCCCC
T ss_pred CCCCCCC
Confidence 9887653
No 168
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.48 E-value=9.9e-14 Score=129.47 Aligned_cols=82 Identities=24% Similarity=0.363 Sum_probs=71.4
Q ss_pred CCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 007955 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (583)
Q Consensus 371 ~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~ 446 (583)
...++|||+|| ++.+|+++|+++|++||.|.+|+|+.| +++|||||+|.+.++|.+|++. +++.|+|+.|.|.+
T Consensus 102 ~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~ 179 (196)
T 1l3k_A 102 LTVKKIFVGGI-KEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRK 179 (196)
T ss_dssp -CCSEEEEECC-TTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEE
T ss_pred CCcceEEEeCC-CCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEe
Confidence 45689999999 999999999999999999999999986 5799999999999999999998 89999999999999
Q ss_pred cccCCCCc
Q 007955 447 YKEKGKVP 454 (583)
Q Consensus 447 Ak~K~k~~ 454 (583)
+.++....
T Consensus 180 a~~k~~~~ 187 (196)
T 1l3k_A 180 ALSKQEMA 187 (196)
T ss_dssp CC------
T ss_pred cCChhHhc
Confidence 99877654
No 169
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.46 E-value=9.3e-14 Score=131.59 Aligned_cols=81 Identities=12% Similarity=0.256 Sum_probs=75.4
Q ss_pred CCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 007955 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (583)
Q Consensus 371 ~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~ 446 (583)
...++|||+|| +..+|+++|+++|++||+|++|+|+.+ +++|||||+|.+.++|.+|++.||+..|+|+.|.|.+
T Consensus 123 ~~~~~l~v~nl-p~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~ 201 (216)
T 2qfj_A 123 RAFNRIYVASV-HQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGK 201 (216)
T ss_dssp TTSCEEEEECC-CTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEE
T ss_pred CCCcEEEEeCC-CCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEE
Confidence 34689999999 999999999999999999999999986 5699999999999999999999999999999999999
Q ss_pred cccCCC
Q 007955 447 YKEKGK 452 (583)
Q Consensus 447 Ak~K~k 452 (583)
+.++..
T Consensus 202 a~~~~~ 207 (216)
T 2qfj_A 202 AVTPPM 207 (216)
T ss_dssp CSSCSS
T ss_pred ecCCCC
Confidence 987654
No 170
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.46 E-value=1.6e-13 Score=136.26 Aligned_cols=83 Identities=16% Similarity=0.243 Sum_probs=75.9
Q ss_pred CCCCCcEEEEeCCCCCCCCHHHHH----HHHhhcCCceeEEEecc-CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEE
Q 007955 369 VNPASRQIYLTFPADSTFREEDVS----NYFSIYGPVQDVRIPYQ-QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVL 443 (583)
Q Consensus 369 ~~~~~rtIYVgnL~~~~~tEedLr----e~FsqFG~V~~VrI~~D-ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~ 443 (583)
.....++|||+|| ++++|+++|+ ++|++||+|.+|+|+++ ++||||||+|.+.++|++|++.||+..|.|+.|.
T Consensus 5 ~~~~~~~l~V~nl-p~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 83 (282)
T 3pgw_A 5 ETRPNHTIYINNL-NEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 83 (282)
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEE
Confidence 3466899999999 9999999977 89999999999999875 7899999999999999999999999999999999
Q ss_pred EEecccCCC
Q 007955 444 VKPYKEKGK 452 (583)
Q Consensus 444 Vk~Ak~K~k 452 (583)
|.+++.+..
T Consensus 84 v~~a~~~~~ 92 (282)
T 3pgw_A 84 IQYAKTDSD 92 (282)
T ss_pred EEEeccCcc
Confidence 999966553
No 171
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.46 E-value=9.2e-14 Score=127.07 Aligned_cols=77 Identities=14% Similarity=0.319 Sum_probs=72.2
Q ss_pred CCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 007955 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (583)
Q Consensus 371 ~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~ 446 (583)
...++|||+|| +..+|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|.+|++.||+..++|+.|.|.+
T Consensus 92 ~~~~~l~v~nl-p~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 170 (172)
T 2g4b_A 92 PGAHKLFIGGL-PNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 170 (172)
T ss_dssp TTTTCEEEECC-CTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEEcC-CCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 44789999999 999999999999999999999999886 4689999999999999999999999999999999998
Q ss_pred cc
Q 007955 447 YK 448 (583)
Q Consensus 447 Ak 448 (583)
|.
T Consensus 171 As 172 (172)
T 2g4b_A 171 AS 172 (172)
T ss_dssp CC
T ss_pred CC
Confidence 73
No 172
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.45 E-value=1.6e-13 Score=147.69 Aligned_cols=81 Identities=16% Similarity=0.358 Sum_probs=75.3
Q ss_pred CCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 007955 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (583)
Q Consensus 371 ~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~ 446 (583)
...++|||+|| ++.+|+++|+++|++||+|+.|.|+.| +++|||||+|.+.++|.+||..||++.|+|+.|.|.+
T Consensus 100 ~~~~~lfV~nL-~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 100 DAFKTLFVARV-NYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34689999999 999999999999999999999999976 5799999999999999999999999999999999999
Q ss_pred cccCCC
Q 007955 447 YKEKGK 452 (583)
Q Consensus 447 Ak~K~k 452 (583)
+.++..
T Consensus 179 a~~~~~ 184 (437)
T 3pgw_S 179 ERGRTV 184 (437)
T ss_pred eCCCCC
Confidence 986543
No 173
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.44 E-value=1.6e-13 Score=129.90 Aligned_cols=81 Identities=17% Similarity=0.408 Sum_probs=73.9
Q ss_pred CcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEecc
Q 007955 373 SRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (583)
Q Consensus 373 ~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~Ak 448 (583)
.++|||+|| +.++|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.+++..|.|+.|.|.++.
T Consensus 28 ~~~l~V~nL-p~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 28 MSRVYVGSI-YYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HTEEEEECC-CTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred CCEEEEECC-CCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 589999999 999999999999999999999999886 589999999999999999999999999999999999887
Q ss_pred cCCCCc
Q 007955 449 EKGKVP 454 (583)
Q Consensus 449 ~K~k~~ 454 (583)
.+....
T Consensus 107 ~~~~~~ 112 (216)
T 2qfj_A 107 NIGQAQ 112 (216)
T ss_dssp CCGGGH
T ss_pred Cccccc
Confidence 665443
No 174
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.44 E-value=2.4e-13 Score=130.82 Aligned_cols=76 Identities=14% Similarity=0.169 Sum_probs=69.9
Q ss_pred CcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEeccc
Q 007955 373 SRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (583)
Q Consensus 373 ~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D---ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~Ak~ 449 (583)
.++|||+|| ++++|+++|+++|++||+|.+|+|+++ ++||||||+|.+.++|++|++.++ +.++|+.|.|.++++
T Consensus 109 ~~~l~V~nL-p~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKGF-PTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKDD 186 (193)
T ss_dssp HTEEEEECC-CTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETTT
T ss_pred cCEEEecCC-CCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhHH
Confidence 589999999 999999999999999999999999986 589999999999999999998854 699999999998765
Q ss_pred C
Q 007955 450 K 450 (583)
Q Consensus 450 K 450 (583)
-
T Consensus 187 y 187 (193)
T 2voo_A 187 Y 187 (193)
T ss_dssp C
T ss_pred H
Confidence 3
No 175
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.44 E-value=3.3e-13 Score=118.31 Aligned_cols=79 Identities=15% Similarity=0.061 Sum_probs=69.4
Q ss_pred CCCcEEEEeCCCCC----CCCHHHHHHHHhhcCCceeEEEecc-----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeE
Q 007955 371 PASRQIYLTFPADS----TFREEDVSNYFSIYGPVQDVRIPYQ-----QKRMFGFVTFVYPETVKIILAKGNPHFVCDAR 441 (583)
Q Consensus 371 ~~~rtIYVgnL~~~----~~tEedLre~FsqFG~V~~VrI~~D-----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~ 441 (583)
..+++|+|.|+... +-++++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|.+|++.||+..++||.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 45789999999321 2378999999999999999999875 57999999999999999999999999999999
Q ss_pred EEEEeccc
Q 007955 442 VLVKPYKE 449 (583)
Q Consensus 442 V~Vk~Ak~ 449 (583)
|.|.++.+
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999854
No 176
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=1.9e-13 Score=118.92 Aligned_cols=79 Identities=9% Similarity=0.091 Sum_probs=69.6
Q ss_pred CCCCCcEEEEeCCCCCCCCHHH----HHHHHhhc-CCceeEEEeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEE
Q 007955 369 VNPASRQIYLTFPADSTFREED----VSNYFSIY-GPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVL 443 (583)
Q Consensus 369 ~~~~~rtIYVgnL~~~~~tEed----Lre~FsqF-G~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~ 443 (583)
..+..+.|||+|| ++++++++ |+++|++| |+|.+|. .|||||+|.+.++|++|++.|++..|.||.|+
T Consensus 5 ~~p~~T~lYV~NL-~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt------gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~ 77 (96)
T 2diu_A 5 SSGCHTLLYVYNL-PANKDGKSVSNRLRRLSDNCGGKVLSIT------GCSAILRFINQDSAERAQKRMENEDVFGNRII 77 (96)
T ss_dssp CCCSSEEEEEESC-CTTSCHHHHHHHHHHHHHTTTCCEEECC------TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCcceEEEEeCC-CCcCCHHHHHHHHHHHHHHcCCeeEEEe------cCEEEEEECCHHHHHHHHHHhcCCccCCceEE
Confidence 3455556999999 99999988 55899999 5999993 39999999999999999999999999999999
Q ss_pred EEecccCCCCc
Q 007955 444 VKPYKEKGKVP 454 (583)
Q Consensus 444 Vk~Ak~K~k~~ 454 (583)
|.+|+.+....
T Consensus 78 v~~A~~~sd~~ 88 (96)
T 2diu_A 78 VSFTPKNRELC 88 (96)
T ss_dssp EESSCCSCCCC
T ss_pred EEecCCCccee
Confidence 99999887653
No 177
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.43 E-value=2.9e-13 Score=124.21 Aligned_cols=75 Identities=12% Similarity=0.167 Sum_probs=66.0
Q ss_pred cEEEEeCC---CCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECC----HHH----HHHHHH--hCCCeE
Q 007955 374 RQIYLTFP---ADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVY----PET----VKIILA--KGNPHF 436 (583)
Q Consensus 374 rtIYVgnL---~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~----~e~----A~~Al~--~mng~~ 436 (583)
++||||+| .++.++|++|+++|++||+|.+|.++.| ++||||||+|.+ +++ |.+|+. .+|+..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 3569999999999999999999999998 689999999996 333 889988 789999
Q ss_pred EcCeEEEEEecc
Q 007955 437 VCDARVLVKPYK 448 (583)
Q Consensus 437 L~GR~V~Vk~Ak 448 (583)
|+||.|+|..-.
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999998643
No 178
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=5.6e-13 Score=116.78 Aligned_cols=81 Identities=11% Similarity=0.148 Sum_probs=70.4
Q ss_pred CCCcEEEEeCCCCCCC-----------CHHHHHHHHhhcCCceeEEEeccCCCceEEEEECCHHHHHHHHHhCCCeEEcC
Q 007955 371 PASRQIYLTFPADSTF-----------REEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCD 439 (583)
Q Consensus 371 ~~~rtIYVgnL~~~~~-----------tEedLre~FsqFG~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~mng~~L~G 439 (583)
..+++|+|.|| -... ++++|+++|++||+|.+|.|+...+||||||+|.+.++|++|++.||++.|+|
T Consensus 13 ~~s~~l~l~Nl-~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 91 (112)
T 2dit_A 13 RHERVVIIKNM-FHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGG 91 (112)
T ss_dssp CSCCEEEEESS-CCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETT
T ss_pred CCceEEEEEcC-CCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 45789999999 3322 25899999999999999977433689999999999999999999999999999
Q ss_pred eEEEEEecccCCC
Q 007955 440 ARVLVKPYKEKGK 452 (583)
Q Consensus 440 R~V~Vk~Ak~K~k 452 (583)
+.|.|.++.++..
T Consensus 92 r~l~v~~a~~~~~ 104 (112)
T 2dit_A 92 RQITAQAWDGTTD 104 (112)
T ss_dssp EECEEEECCSCCC
T ss_pred cEEEEEEeCCCCC
Confidence 9999999987654
No 179
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.42 E-value=2e-13 Score=124.58 Aligned_cols=80 Identities=19% Similarity=0.264 Sum_probs=71.9
Q ss_pred CCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc------CCCceEEEEECCHHHHHHHHHhCCCeEEc---CeEE
Q 007955 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ------QKRMFGFVTFVYPETVKIILAKGNPHFVC---DARV 442 (583)
Q Consensus 372 ~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D------ksRGfAFVtF~~~e~A~~Al~~mng~~L~---GR~V 442 (583)
..++|||+|| ++++|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.|++..+. ++.+
T Consensus 2 ~~~~l~V~nL-p~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~ 80 (175)
T 3nmr_A 2 DAIKMFVGQV-PRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPI 80 (175)
T ss_dssp CCEEEEEESC-CTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CceEEEEeCC-CCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccce
Confidence 4689999999 999999999999999999999999986 47899999999999999999999988776 7888
Q ss_pred EEEecccCCC
Q 007955 443 LVKPYKEKGK 452 (583)
Q Consensus 443 ~Vk~Ak~K~k 452 (583)
.|.++..+..
T Consensus 81 ~~~~~~~~~~ 90 (175)
T 3nmr_A 81 QMKPADSEKN 90 (175)
T ss_dssp EEEECGGGCC
T ss_pred EEcccccccc
Confidence 8888776544
No 180
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.42 E-value=2.2e-13 Score=123.96 Aligned_cols=76 Identities=24% Similarity=0.426 Sum_probs=69.8
Q ss_pred CCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEec
Q 007955 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (583)
Q Consensus 372 ~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~A 447 (583)
..++|||+|| ++++|+++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++. ++.++|+.|.|.++
T Consensus 2 ~~~~l~v~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~ 78 (167)
T 2cjk_A 2 ESCKMFIGGL-NWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRA 78 (167)
T ss_dssp GGGEEEECSC-CTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEEC
T ss_pred CCcEEEEeCC-CCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcccccc
Confidence 3689999999 999999999999999999999999886 5899999999999999999996 57999999999988
Q ss_pred ccC
Q 007955 448 KEK 450 (583)
Q Consensus 448 k~K 450 (583)
.++
T Consensus 79 ~~~ 81 (167)
T 2cjk_A 79 IPR 81 (167)
T ss_dssp CCH
T ss_pred cch
Confidence 653
No 181
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.42 E-value=3.1e-13 Score=134.24 Aligned_cols=78 Identities=19% Similarity=0.307 Sum_probs=70.9
Q ss_pred CCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc---CCCceEEEEECCHHHHHHHHHhC-CCeEEc---CeEEEE
Q 007955 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKG-NPHFVC---DARVLV 444 (583)
Q Consensus 372 ~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D---ksRGfAFVtF~~~e~A~~Al~~m-ng~~L~---GR~V~V 444 (583)
..++|||+|| +..+|+++|+++|++||+|.+|+|+.| +++|||||+|.+.++|.+|+..| ++..+. |+.|.|
T Consensus 95 ~~~~l~v~nl-~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 95 HGAALTVKNL-SPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CSSEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred cCCcccccCC-CCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 3679999999 999999999999999999999999987 67999999999999999999999 556665 999999
Q ss_pred EecccC
Q 007955 445 KPYKEK 450 (583)
Q Consensus 445 k~Ak~K 450 (583)
.++...
T Consensus 174 ~~~~~~ 179 (261)
T 3sde_A 174 EPMEQF 179 (261)
T ss_dssp EECCCE
T ss_pred eecccc
Confidence 999764
No 182
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.41 E-value=1.7e-13 Score=129.03 Aligned_cols=78 Identities=14% Similarity=0.261 Sum_probs=73.1
Q ss_pred CCcEEEEeCCCCC-CCCHHHHHHHHhhcCCceeEEEeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEecccC
Q 007955 372 ASRQIYLTFPADS-TFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEK 450 (583)
Q Consensus 372 ~~rtIYVgnL~~~-~~tEedLre~FsqFG~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~Ak~K 450 (583)
+.++|||+|| +. .+++++|+++|++||+|.+|+|+.++ +|||||+|.+.++|++|++.|++..+.|+.|.|.++..+
T Consensus 2 ~~~~l~v~nl-p~~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~ 79 (198)
T 1qm9_A 2 GNSVLLVSNL-NPERVTPQSLFILFGVYGDVQRVKILFNK-KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 79 (198)
T ss_dssp CCCEEEEECC-CSSSCCHHHHHHHHHTTCCCSEEECSTTC-SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCC
T ss_pred CCcEEEEeCC-CcccCCHHHHHHHHHhcCCEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCC
Confidence 3689999999 87 99999999999999999999999975 899999999999999999999999999999999999765
Q ss_pred C
Q 007955 451 G 451 (583)
Q Consensus 451 ~ 451 (583)
.
T Consensus 80 ~ 80 (198)
T 1qm9_A 80 N 80 (198)
T ss_dssp S
T ss_pred C
Confidence 3
No 183
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.41 E-value=3.2e-13 Score=124.32 Aligned_cols=80 Identities=14% Similarity=0.091 Sum_probs=72.4
Q ss_pred CCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEeccc
Q 007955 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (583)
Q Consensus 370 ~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~Ak~ 449 (583)
....++|||+|| +..+|+++|+++|++||.|..| ....+++|||||+|.+.++|.+|++.||+..|+|+.|.|.++.+
T Consensus 96 ~~~~~~l~v~nl-p~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 173 (175)
T 1fje_B 96 VRAARTLLAKNL-SFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 173 (175)
T ss_dssp TGGGGEEEEESC-CSSCCHHHHHHHCTTCSEEEEE-CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSS
T ss_pred cccCCEEEEeCC-CCCCCHHHHHHHHHhcCeEEEe-cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCC
Confidence 345789999999 9999999999999999999887 33337999999999999999999999999999999999999987
Q ss_pred CC
Q 007955 450 KG 451 (583)
Q Consensus 450 K~ 451 (583)
|.
T Consensus 174 k~ 175 (175)
T 1fje_B 174 KG 175 (175)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 184
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.41 E-value=6.9e-13 Score=131.77 Aligned_cols=77 Identities=17% Similarity=0.155 Sum_probs=72.3
Q ss_pred CCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEeccCCCceEEEEECCHHHHHHHHHhCCCeEEc-CeEEEEEecc
Q 007955 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVC-DARVLVKPYK 448 (583)
Q Consensus 370 ~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~mng~~L~-GR~V~Vk~Ak 448 (583)
.+..++|||+|| +..+++++|+++|++||.|.+|+|+.++ +|||||+|.+.++|.+|++.||+..|. |+.|.|.+++
T Consensus 204 ~~~~~~l~v~nl-~~~~~~~~l~~~F~~~G~i~~v~~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 204 NPPNHILFLTNL-PEETNELMLSMLFNQFPGFKEVRLVPGR-HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred CCCCCEEEEeCC-CCcCCHHHHHHHHHhcCCeEEEEEecCC-CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 356789999999 9999999999999999999999999864 699999999999999999999999999 9999999986
No 185
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.40 E-value=3.3e-13 Score=123.19 Aligned_cols=76 Identities=20% Similarity=0.304 Sum_probs=70.2
Q ss_pred CCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc---CCCceEEEEECCHHHHHHHHHhCCCeEEc---CeEEEE
Q 007955 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVC---DARVLV 444 (583)
Q Consensus 371 ~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D---ksRGfAFVtF~~~e~A~~Al~~mng~~L~---GR~V~V 444 (583)
...++|||+|| ++.+|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|.+|++.||+..+. |+.|.|
T Consensus 93 ~~~~~l~v~nl-~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V 171 (175)
T 3nmr_A 93 VEDRKLFIGMI-SKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVV 171 (175)
T ss_dssp GGGSEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEE
T ss_pred CCCCeEEEcCC-CCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEE
Confidence 35789999999 999999999999999999999999887 57999999999999999999999998776 499999
Q ss_pred Eec
Q 007955 445 KPY 447 (583)
Q Consensus 445 k~A 447 (583)
.+|
T Consensus 172 ~~a 174 (175)
T 3nmr_A 172 KFA 174 (175)
T ss_dssp EEC
T ss_pred Eec
Confidence 987
No 186
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.39 E-value=5.9e-13 Score=120.97 Aligned_cols=77 Identities=17% Similarity=0.227 Sum_probs=71.4
Q ss_pred CCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcC--eEEE
Q 007955 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCD--ARVL 443 (583)
Q Consensus 370 ~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~G--R~V~ 443 (583)
....++|||+|| +..+++++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|.+|++.||+..+.| ++|.
T Consensus 86 ~~~~~~l~v~nl-~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~ 164 (168)
T 1b7f_A 86 SIKDTNLYVTNL-PRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLS 164 (168)
T ss_dssp TTTTCEEEEESC-CTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCE
T ss_pred cCCCCCEEEeCC-CCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEE
Confidence 355789999999 999999999999999999999999886 468999999999999999999999999988 9999
Q ss_pred EEec
Q 007955 444 VKPY 447 (583)
Q Consensus 444 Vk~A 447 (583)
|.+|
T Consensus 165 V~~A 168 (168)
T 1b7f_A 165 VRLA 168 (168)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9875
No 187
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.37 E-value=7.3e-13 Score=119.75 Aligned_cols=76 Identities=21% Similarity=0.243 Sum_probs=69.9
Q ss_pred CCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeE--EEE
Q 007955 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDAR--VLV 444 (583)
Q Consensus 371 ~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~--V~V 444 (583)
...++|||+|| +..+++++|+++|++||.|.+|+|+.+ +++|||||+|.+.++|.+|++.||+..+.|+. |.|
T Consensus 86 ~~~~~l~v~nl-~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v 164 (167)
T 1fxl_A 86 IRDANLYVSGL-PKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITV 164 (167)
T ss_dssp GTTCEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred CCCCcEEECCC-CCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEE
Confidence 45689999999 999999999999999999999999876 46899999999999999999999999999975 888
Q ss_pred Eec
Q 007955 445 KPY 447 (583)
Q Consensus 445 k~A 447 (583)
.+|
T Consensus 165 ~~A 167 (167)
T 1fxl_A 165 KFA 167 (167)
T ss_dssp EEC
T ss_pred EeC
Confidence 775
No 188
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.37 E-value=1.1e-12 Score=130.55 Aligned_cols=85 Identities=9% Similarity=0.013 Sum_probs=77.6
Q ss_pred CCCcEEEEeCCCCCCC-CHHHHHHHHhhcCCceeEEEecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 007955 371 PASRQIYLTFPADSTF-REEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (583)
Q Consensus 371 ~~~rtIYVgnL~~~~~-tEedLre~FsqFG~V~~VrI~~D---ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~ 446 (583)
...++|||+|| ++.+ |+++|+++|++||.|.+|+|+.+ +++|||||+|.+.++|.+|++.||+..|+|+.|.|.+
T Consensus 182 ~~~~~l~v~nl-p~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 260 (284)
T 3smz_A 182 LHSRCLCVDRL-PPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSF 260 (284)
T ss_dssp TSCSEEEEECC-CTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCccEEEEecC-CcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEE
Confidence 45789999999 8885 99999999999999999999886 6799999999999999999999999999999999999
Q ss_pred cccCCCCchH
Q 007955 447 YKEKGKVPDK 456 (583)
Q Consensus 447 Ak~K~k~~~~ 456 (583)
+.++......
T Consensus 261 a~~~~~~~~~ 270 (284)
T 3smz_A 261 CAPGPPGRSM 270 (284)
T ss_dssp CCSSSCHHHH
T ss_pred ecCCCcccch
Confidence 9888764433
No 189
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.37 E-value=1.6e-12 Score=118.79 Aligned_cols=76 Identities=17% Similarity=0.292 Sum_probs=69.7
Q ss_pred CCcEEEEeCCCCCCCCHHHHHHHHhhc----C-------CceeEEEeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCe
Q 007955 372 ASRQIYLTFPADSTFREEDVSNYFSIY----G-------PVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDA 440 (583)
Q Consensus 372 ~~rtIYVgnL~~~~~tEedLre~FsqF----G-------~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~mng~~L~GR 440 (583)
..++|||+|| +.++|+++|+++|++| | .|.++++.. +||||||+|.++++|++|+ .+|++.+.|+
T Consensus 3 ~~~~l~V~nL-p~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~--~~g~afV~f~~~~~A~~A~-~~~~~~~~g~ 78 (172)
T 2g4b_A 3 SARRLYVGNI-PFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ--DKNFAFLEFRSVDETTQAM-AFDGIIFQGQ 78 (172)
T ss_dssp GGGEEEEESC-CTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET--TTTEEEEEESSHHHHHHHG-GGTTCEETTE
T ss_pred cccEEEEcCC-CcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC--CCCEEEEEeCCHHHHHHHH-HhCCcEecCc
Confidence 4689999999 9999999999999999 7 788888876 7999999999999999999 8899999999
Q ss_pred EEEEEecccCC
Q 007955 441 RVLVKPYKEKG 451 (583)
Q Consensus 441 ~V~Vk~Ak~K~ 451 (583)
.|.|.++....
T Consensus 79 ~i~v~~~~~~~ 89 (172)
T 2g4b_A 79 SLKIRRPHDYQ 89 (172)
T ss_dssp ECEEECCSSCC
T ss_pred eeeecCCcccC
Confidence 99999887653
No 190
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.36 E-value=2e-12 Score=120.77 Aligned_cols=77 Identities=17% Similarity=0.278 Sum_probs=69.0
Q ss_pred CCcEEEEeCCCCCCCCHHHHHHHHhhc----C-------CceeEEEeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCe
Q 007955 372 ASRQIYLTFPADSTFREEDVSNYFSIY----G-------PVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDA 440 (583)
Q Consensus 372 ~~rtIYVgnL~~~~~tEedLre~FsqF----G-------~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~mng~~L~GR 440 (583)
..++|||+|| ++++|+++|+++|++| | .|.++++.. +||||||+|.+.++|++|+ .||++.|.|+
T Consensus 3 ~~~~l~V~nL-p~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~--~~g~afV~F~~~~~A~~Al-~l~g~~~~g~ 78 (198)
T 2yh0_A 3 MARRLYVGNI-PFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ--DKNFAFLEFRSVDETTQAM-AFDGIIFQGQ 78 (198)
T ss_dssp -CCEEEEESC-CTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEET--TTTEEEEEESCSHHHHHHG-GGTTEEETTE
T ss_pred ceeEEEEcCC-CCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecC--CCCEEEEEeCCHHHHHHHH-HhcCCEEcCc
Confidence 4689999999 9999999999999999 5 677777665 8999999999999999999 8899999999
Q ss_pred EEEEEecccCCC
Q 007955 441 RVLVKPYKEKGK 452 (583)
Q Consensus 441 ~V~Vk~Ak~K~k 452 (583)
.|.|.++..+..
T Consensus 79 ~i~v~~~~~~~~ 90 (198)
T 2yh0_A 79 SLKIRRPHDYQP 90 (198)
T ss_dssp EEEEECCCCCCC
T ss_pred eEEEeCCCCCCC
Confidence 999999876643
No 191
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.36 E-value=1.5e-12 Score=129.26 Aligned_cols=78 Identities=18% Similarity=0.245 Sum_probs=73.0
Q ss_pred CCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEeccc
Q 007955 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (583)
Q Consensus 370 ~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~Ak~ 449 (583)
....++|||+|| ++++|+++|+++|++||+|.+|+|.+ +||||||+|.+.++|++|+..+++..|.|+.|.|.++.+
T Consensus 19 ~~~~~~l~V~nL-p~~~te~~l~~~F~~~G~i~~v~i~~--~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 95 (261)
T 3sde_A 19 YTQRCRLFVGNL-PTDITEEDFKRLFERYGEPSEVFINR--DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH 95 (261)
T ss_dssp SCGGGEEEEESC-CTTCCHHHHHHHTGGGCCCSEEEEET--TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCCCEEEEECC-CCCCCHHHHHHHHHhcCCEEEEEEeC--CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc
Confidence 355689999999 99999999999999999999999987 799999999999999999999999999999999999875
Q ss_pred C
Q 007955 450 K 450 (583)
Q Consensus 450 K 450 (583)
.
T Consensus 96 ~ 96 (261)
T 3sde_A 96 G 96 (261)
T ss_dssp S
T ss_pred C
Confidence 3
No 192
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=4.3e-12 Score=110.77 Aligned_cols=84 Identities=11% Similarity=0.201 Sum_probs=69.6
Q ss_pred CCCCCCCcEEEEeCCCC------CCCCHHHHHHHHhhcCCceeEEEeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCe
Q 007955 367 GIVNPASRQIYLTFPAD------STFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDA 440 (583)
Q Consensus 367 g~~~~~~rtIYVgnL~~------~~~tEedLre~FsqFG~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~mng~~L~GR 440 (583)
...+...++|-|..... ..++|++|+++|++||+|.+|+|+. ++||||||+|.++++|+.|++.+++ +.|+
T Consensus 4 ~~~~~~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~-~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~ 80 (100)
T 2d9o_A 4 GSSGQGTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSS-KKPGTAVVEFATVKAAELAVQNEVG--LVDN 80 (100)
T ss_dssp CCCCCSSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEES-SSSSEEEEEESCHHHHHHHHHTCCB--CSSS
T ss_pred CcCCCccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEcc-CCCCEEEEEECCHHHHHHHHHhcCC--CCCC
Confidence 34455567777777622 3589999999999999999999984 6999999999999999999998544 6899
Q ss_pred EEEEEecccCCCC
Q 007955 441 RVLVKPYKEKGKV 453 (583)
Q Consensus 441 ~V~Vk~Ak~K~k~ 453 (583)
.|.|.+++++...
T Consensus 81 ~l~V~~a~~~~~~ 93 (100)
T 2d9o_A 81 PLKISWLEGQPQD 93 (100)
T ss_dssp BCEEECSSCCCCC
T ss_pred eEEEEEccCCCCC
Confidence 9999999877643
No 193
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.35 E-value=1.9e-12 Score=129.30 Aligned_cols=80 Identities=16% Similarity=0.275 Sum_probs=74.2
Q ss_pred CCCCcEEEEeCCCCCC-CCHHHHHHHHhhcCCceeEEEecc-----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEE
Q 007955 370 NPASRQIYLTFPADST-FREEDVSNYFSIYGPVQDVRIPYQ-----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVL 443 (583)
Q Consensus 370 ~~~~rtIYVgnL~~~~-~tEedLre~FsqFG~V~~VrI~~D-----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~ 443 (583)
....++|||+|| ++. +|+++|+++|++||.|.+|+|+.+ +++|||||+|.+.++|.+|+ .||+..|.|+.|.
T Consensus 207 ~~~~~~l~v~nl-p~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~ 284 (292)
T 2ghp_A 207 TLEGREIMIRNL-STELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREIS 284 (292)
T ss_dssp CCTTTEEEEEEE-CTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEE
T ss_pred CCCCceEEEECC-CcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEE
Confidence 356789999999 889 999999999999999999999885 46899999999999999999 9999999999999
Q ss_pred EEecccCC
Q 007955 444 VKPYKEKG 451 (583)
Q Consensus 444 Vk~Ak~K~ 451 (583)
|.++++|.
T Consensus 285 V~~a~~k~ 292 (292)
T 2ghp_A 285 VSLADKKP 292 (292)
T ss_dssp EEECCCCC
T ss_pred EEEecCCC
Confidence 99998763
No 194
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.35 E-value=9.4e-13 Score=121.15 Aligned_cols=82 Identities=13% Similarity=0.135 Sum_probs=71.1
Q ss_pred CCCCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEec---cCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEE
Q 007955 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPY---QQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (583)
Q Consensus 369 ~~~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~---DksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk 445 (583)
.....++|||+|| ++++|+++|+++|++||.|..+.|.. +++||||||+|.+.++|++|++ ||+..|.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nL-p~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 9 ESTTPFNLFIGNL-NPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 86 (175)
T ss_dssp SCSSSEEEEEECC-CTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEE
T ss_pred CCCCCcEEEEeCC-CCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEe
Confidence 4466899999999 99999999999999999887732221 2689999999999999999995 89999999999999
Q ss_pred ecccCCC
Q 007955 446 PYKEKGK 452 (583)
Q Consensus 446 ~Ak~K~k 452 (583)
++.++..
T Consensus 87 ~~~~~~~ 93 (175)
T 1fje_B 87 KPKGRDS 93 (175)
T ss_dssp CCCCSSC
T ss_pred cCCCccc
Confidence 9987654
No 195
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.32 E-value=1.8e-12 Score=122.07 Aligned_cols=78 Identities=21% Similarity=0.202 Sum_probs=72.6
Q ss_pred CCCcEEEEeCCCCCCCCHHHHHHHHhhcC-CceeEEEeccCCCceEEEEECCHHHHHHHHHhCCCeEEc-CeEEEEEecc
Q 007955 371 PASRQIYLTFPADSTFREEDVSNYFSIYG-PVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVC-DARVLVKPYK 448 (583)
Q Consensus 371 ~~~rtIYVgnL~~~~~tEedLre~FsqFG-~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~mng~~L~-GR~V~Vk~Ak 448 (583)
+..++|||+|| +..+++++|+++|++|| +|.+|+|+.+ .+|||||+|.+.++|.+|++.||+..+. |+.|.|.+++
T Consensus 118 ~~~~~l~v~nl-~~~~~~~~l~~~f~~~G~~v~~v~i~~~-~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~ 195 (198)
T 1qm9_A 118 PPSATLHLSNI-PPSVSEEDLKVLFSSNGGVVKGFKFFQK-DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 195 (198)
T ss_dssp CCCCEEEECCC-CTTCCHHHHHHHHHHTTSCCCEEEESST-TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEEC
T ss_pred CCccEEEEeCC-CCCCCHHHHHHHHHHcCCCceEEEEEeC-CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeec
Confidence 45799999999 99999999999999999 9999999664 5899999999999999999999999999 9999999987
Q ss_pred cC
Q 007955 449 EK 450 (583)
Q Consensus 449 ~K 450 (583)
++
T Consensus 196 ~~ 197 (198)
T 1qm9_A 196 ST 197 (198)
T ss_dssp CC
T ss_pred cc
Confidence 64
No 196
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.31 E-value=5.1e-12 Score=125.64 Aligned_cols=81 Identities=9% Similarity=0.162 Sum_probs=75.0
Q ss_pred CCCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 007955 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (583)
Q Consensus 371 ~~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D----ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~ 446 (583)
+..++|||+|| ++.+|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|.+|++.|++..++|+.|.|.+
T Consensus 93 ~~~~~l~v~nl-p~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~ 171 (284)
T 3smz_A 93 PTDALLCVANL-PPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHW 171 (284)
T ss_dssp CCSCEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEcCC-CCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 45689999999 999999999999999999999999876 4799999999999999999999999999999999999
Q ss_pred cccCCC
Q 007955 447 YKEKGK 452 (583)
Q Consensus 447 Ak~K~k 452 (583)
+.++..
T Consensus 172 a~~~~~ 177 (284)
T 3smz_A 172 TDAGQL 177 (284)
T ss_dssp CCGGGC
T ss_pred CCCCCC
Confidence 977553
No 197
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.30 E-value=8.1e-13 Score=115.42 Aligned_cols=69 Identities=12% Similarity=0.112 Sum_probs=60.5
Q ss_pred EeCCCCCCCCHHHHHHHH------------hhcCCceeEEEecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEE
Q 007955 378 LTFPADSTFREEDVSNYF------------SIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARV 442 (583)
Q Consensus 378 VgnL~~~~~tEedLre~F------------sqFG~V~~VrI~~D---ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V 442 (583)
+.+| ++.+++++|+++| ++||+|.+|+|+++ ++||||||+|.+.++|++|++.||+..++||.|
T Consensus 20 ~~~l-~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGL-RSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCc-ccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 5566 6667777777666 99999999999987 579999999999999999999999999999999
Q ss_pred EEEec
Q 007955 443 LVKPY 447 (583)
Q Consensus 443 ~Vk~A 447 (583)
.|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99875
No 198
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.30 E-value=4.3e-12 Score=123.47 Aligned_cols=78 Identities=21% Similarity=0.202 Sum_probs=72.5
Q ss_pred CCCcEEEEeCCCCCCCCHHHHHHHHhhcC-CceeEEEeccCCCceEEEEECCHHHHHHHHHhCCCeEEc-CeEEEEEecc
Q 007955 371 PASRQIYLTFPADSTFREEDVSNYFSIYG-PVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVC-DARVLVKPYK 448 (583)
Q Consensus 371 ~~~rtIYVgnL~~~~~tEedLre~FsqFG-~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~mng~~L~-GR~V~Vk~Ak 448 (583)
+..++|||+|| +..+++++|+++|++|| +|.+|+|+.+ ++|||||+|.+.++|.+|++.||+..+. |+.|.|.+++
T Consensus 149 ~~~~~l~V~nl-p~~~t~~~l~~~f~~~G~~i~~v~i~~~-~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~ 226 (229)
T 2adc_A 149 PPSATLHLSNI-PPSVSEEDLKVLFSSNGGVVKGFKFFQK-DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 226 (229)
T ss_dssp CSCSEEEEECC-CTTCCHHHHHHHHHTTSCCEEEEEECSS-STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECS
T ss_pred CCCCEEEEeCC-CccCCHHHHHHHHHHcCCCeeEEEEEEC-CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEec
Confidence 45799999999 99999999999999999 9999999553 6899999999999999999999999999 9999999997
Q ss_pred cC
Q 007955 449 EK 450 (583)
Q Consensus 449 ~K 450 (583)
++
T Consensus 227 ~~ 228 (229)
T 2adc_A 227 ST 228 (229)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 199
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.27 E-value=7.2e-12 Score=125.02 Aligned_cols=80 Identities=13% Similarity=0.208 Sum_probs=71.2
Q ss_pred CCcEEEEeCCCCCCCCHHHHHHHHhhcC-CceeEEEecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEec
Q 007955 372 ASRQIYLTFPADSTFREEDVSNYFSIYG-PVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (583)
Q Consensus 372 ~~rtIYVgnL~~~~~tEedLre~FsqFG-~V~~VrI~~D---ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~A 447 (583)
..++|||+|| ++.+++++|+++|++|| +|.+|+|+.+ +++|||||+|.+.++|.+|++.|+++.|.|+.|.|.++
T Consensus 116 ~~~~l~v~nl-p~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 TECTLWMTNF-PPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CSCEEEEECC-CTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECC-CCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 4789999999 99999999999999999 9999999886 48999999999999999999999999999999999999
Q ss_pred ccCCC
Q 007955 448 KEKGK 452 (583)
Q Consensus 448 k~K~k 452 (583)
.++..
T Consensus 195 ~~~~~ 199 (292)
T 2ghp_A 195 NPLEK 199 (292)
T ss_dssp CCC--
T ss_pred CCCcc
Confidence 87654
No 200
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.27 E-value=5e-12 Score=122.45 Aligned_cols=76 Identities=12% Similarity=0.016 Sum_probs=68.1
Q ss_pred CCCcEEEEeCCCCCCCCHHHHHHHHhhcCCc--eeEEEecc--CCCceEEEEECCHHHHHHHHHhCCCeEEcCe----EE
Q 007955 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPV--QDVRIPYQ--QKRMFGFVTFVYPETVKIILAKGNPHFVCDA----RV 442 (583)
Q Consensus 371 ~~~rtIYVgnL~~~~~tEedLre~FsqFG~V--~~VrI~~D--ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR----~V 442 (583)
+..++|||+|| ++++|+++|+++|++||.| .+|+|+.+ +++|||||+|.+.++|.+|+..||+..|.|+ .+
T Consensus 121 ~p~~~l~v~NL-p~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~ 199 (205)
T 3tyt_A 121 HPSNVLHFFNA-PLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPY 199 (205)
T ss_dssp CCCSEEEEEEE-CTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCE
T ss_pred CCcceEEEeCC-CCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcce
Confidence 44689999999 9999999999999999999 89999887 4579999999999999999999999999988 46
Q ss_pred EEEec
Q 007955 443 LVKPY 447 (583)
Q Consensus 443 ~Vk~A 447 (583)
.|+++
T Consensus 200 ~vk~~ 204 (205)
T 3tyt_A 200 TLKLC 204 (205)
T ss_dssp ECEEE
T ss_pred EEEec
Confidence 66553
No 201
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.25 E-value=1.5e-11 Score=107.73 Aligned_cols=78 Identities=19% Similarity=0.120 Sum_probs=67.4
Q ss_pred CCcEEEEeCCCCC-CC--------CHHHHHHHHhhcCCceeEEEecc------CCCceEEEEECCHHHHHHHHHhCCCeE
Q 007955 372 ASRQIYLTFPADS-TF--------REEDVSNYFSIYGPVQDVRIPYQ------QKRMFGFVTFVYPETVKIILAKGNPHF 436 (583)
Q Consensus 372 ~~rtIYVgnL~~~-~~--------tEedLre~FsqFG~V~~VrI~~D------ksRGfAFVtF~~~e~A~~Al~~mng~~ 436 (583)
.++.|.+.|+-.. .+ .++||++.|++||+|++|+|+++ +++|||||+|.+.++|.+|++.||+..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4788999997221 22 23799999999999999999986 368999999999999999999999999
Q ss_pred EcCeEEEEEeccc
Q 007955 437 VCDARVLVKPYKE 449 (583)
Q Consensus 437 L~GR~V~Vk~Ak~ 449 (583)
++||.|.|.++.+
T Consensus 84 f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 84 FANRVVVTKYCDP 96 (105)
T ss_dssp ETTEECEEEEECH
T ss_pred eCCCEEEEEEeCH
Confidence 9999999998754
No 202
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.23 E-value=1.5e-11 Score=128.94 Aligned_cols=76 Identities=12% Similarity=0.143 Sum_probs=67.0
Q ss_pred CCCCcEEEEeC--CCCCCCCHHHHHHHHhhcCCceeEEEeccCCCceEEEEECCHHHHHHHHHhCCCeEEc---Ce--EE
Q 007955 370 NPASRQIYLTF--PADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVC---DA--RV 442 (583)
Q Consensus 370 ~~~~rtIYVgn--L~~~~~tEedLre~FsqFG~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~mng~~L~---GR--~V 442 (583)
...+++||||| | ++.+||++|+++|++||+|.+|.|+. +||||||+|.+.++|++|++.|||..+. |+ .+
T Consensus 15 ~~ps~~l~VgN~gl-~~~~te~~L~~~F~~~G~V~~v~~~~--~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~l 91 (345)
T 3tht_A 15 SYATQSLVVANGGL-GNGVSRNQLLPVLEKCGLVDALLMPP--NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITL 91 (345)
T ss_dssp SSCCSEEEEETCSG-GGTCCHHHHHHHHHTTSCEEEEECCT--TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEEC
T ss_pred CCCCCEEEEEcCCC-CCCCCHHHHHHHHHhcCCeEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEE
Confidence 45578999999 5 78999999999999999999999887 8999999999999999999999999883 55 56
Q ss_pred EEEecc
Q 007955 443 LVKPYK 448 (583)
Q Consensus 443 ~Vk~Ak 448 (583)
+|.++.
T Consensus 92 y~~~~~ 97 (345)
T 3tht_A 92 YLNFVE 97 (345)
T ss_dssp EEEECS
T ss_pred EEEEee
Confidence 777663
No 203
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.23 E-value=2.3e-11 Score=108.45 Aligned_cols=78 Identities=9% Similarity=-0.022 Sum_probs=67.4
Q ss_pred CCcEEEEeCCCCCCC---------CHHHHHHHHhhcCCceeEEEeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEE
Q 007955 372 ASRQIYLTFPADSTF---------REEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARV 442 (583)
Q Consensus 372 ~~rtIYVgnL~~~~~---------tEedLre~FsqFG~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V 442 (583)
.++.|.+.|+-...- .++||++.|++||+|.+|.|+++..+|||||+|.+.++|++|++.|||..++||.|
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i 85 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMI 85 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 467888888732211 14689999999999999999988789999999999999999999999999999999
Q ss_pred EEEeccc
Q 007955 443 LVKPYKE 449 (583)
Q Consensus 443 ~Vk~Ak~ 449 (583)
.|.++..
T Consensus 86 ~v~~~~~ 92 (114)
T 3s6e_A 86 TAAYVPL 92 (114)
T ss_dssp EEEEECH
T ss_pred EEEEEcH
Confidence 9999853
No 204
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.20 E-value=2.3e-11 Score=109.06 Aligned_cols=78 Identities=19% Similarity=0.210 Sum_probs=67.4
Q ss_pred CCcEEEEeCCCCC----CCCHHHHHHHHhhcCCceeEEEeccC--------CCceEEEEECCHHHHHHHHHhCCCeEEcC
Q 007955 372 ASRQIYLTFPADS----TFREEDVSNYFSIYGPVQDVRIPYQQ--------KRMFGFVTFVYPETVKIILAKGNPHFVCD 439 (583)
Q Consensus 372 ~~rtIYVgnL~~~----~~tEedLre~FsqFG~V~~VrI~~Dk--------sRGfAFVtF~~~e~A~~Al~~mng~~L~G 439 (583)
.+++|+|.|+-.. +-.++||++.|++||+|.+|+|+.++ ++||+||+|.+.++|.+|++.||+..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 3689999998221 12368999999999999999998862 46999999999999999999999999999
Q ss_pred eEEEEEeccc
Q 007955 440 ARVLVKPYKE 449 (583)
Q Consensus 440 R~V~Vk~Ak~ 449 (583)
|.|.|.++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999753
No 205
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.92 E-value=3.4e-09 Score=91.44 Aligned_cols=76 Identities=13% Similarity=0.243 Sum_probs=63.6
Q ss_pred CCCCcEEEEeCCCC---CCCCH----HHHHHHHhhcCCceeEEEeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEE
Q 007955 370 NPASRQIYLTFPAD---STFRE----EDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARV 442 (583)
Q Consensus 370 ~~~~rtIYVgnL~~---~~~tE----edLre~FsqFG~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V 442 (583)
.|..-||+|.-.++ .++-. .+|.+.|++||+|..|+|+.|+ +||+|.+.++|.+|++ ||+..++||.|
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~----~fVtF~d~~sAlaAi~-mnG~~v~Gr~L 78 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK----MWVTFLEGSSALNVLS-LNGKELLNRTI 78 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS----EEEEESSHHHHHHGGG-GTTCEETTEEE
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC----EEEEECChHHHHHHHh-cCCeEeCCeEE
Confidence 35567899888721 22333 6799999999999999999864 8999999999999998 89999999999
Q ss_pred EEEecccC
Q 007955 443 LVKPYKEK 450 (583)
Q Consensus 443 ~Vk~Ak~K 450 (583)
+|..+++.
T Consensus 79 kV~lkt~d 86 (91)
T 2dnr_A 79 TIALKSPS 86 (91)
T ss_dssp EEEECCCS
T ss_pred EEEeCCCC
Confidence 99998753
No 206
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.68 E-value=4.6e-08 Score=84.95 Aligned_cols=75 Identities=21% Similarity=0.256 Sum_probs=63.5
Q ss_pred CCCCCCcEEEEeCCCCCC------CCH---HHHHHHHhhcCCceeEEEeccCCCceEEEEECCHHHHHHHHHhCCCeEEc
Q 007955 368 IVNPASRQIYLTFPADST------FRE---EDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVC 438 (583)
Q Consensus 368 ~~~~~~rtIYVgnL~~~~------~tE---edLre~FsqFG~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~mng~~L~ 438 (583)
...|..-||+|.-+ +.. +.+ .+|.+.|++||+|..|+|+.|+ +||+|.+.++|.+|++ ||+..++
T Consensus 10 ~~GPpD~Tv~V~~~-~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~----~fVtF~d~~sAl~AI~-ldG~~v~ 83 (95)
T 1ufw_A 10 FQGPLDATVVVNLQ-SPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ----MLVTFADSHSALSVLD-VDGMKVK 83 (95)
T ss_dssp CCCCTTCEEEEEES-SCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE----EEEECSCSHHHHHHHH-GGGSEET
T ss_pred ecCCCCCeEEEEec-CCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc----EEEEEcChHHHHHHHh-cCCeeeC
Confidence 34466789999988 432 232 5689999999999999999975 9999999999999999 8999999
Q ss_pred CeEEEEEecc
Q 007955 439 DARVLVKPYK 448 (583)
Q Consensus 439 GR~V~Vk~Ak 448 (583)
||.|+|+...
T Consensus 84 Gr~L~V~~k~ 93 (95)
T 1ufw_A 84 GRAVKISGPS 93 (95)
T ss_dssp TEEEEEECCC
T ss_pred CeEEEEeccC
Confidence 9999998643
No 207
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.62 E-value=7.1e-08 Score=87.27 Aligned_cols=75 Identities=12% Similarity=0.005 Sum_probs=65.8
Q ss_pred CCCcEEEEeCCCCCC-CCHHHHHHHHhhcCCceeEEEeccCCCceEEEEECC-HHHHHHHHHhCC--CeEEcCeEEEEEe
Q 007955 371 PASRQIYLTFPADST-FREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVY-PETVKIILAKGN--PHFVCDARVLVKP 446 (583)
Q Consensus 371 ~~~rtIYVgnL~~~~-~tEedLre~FsqFG~V~~VrI~~DksRGfAFVtF~~-~e~A~~Al~~mn--g~~L~GR~V~Vk~ 446 (583)
+...-|||+|| ++. +++++|+++|++||+|..|.++.| +-.|||.|.+ .++|..|++.+| +..|+|..+.+..
T Consensus 16 ~~G~il~v~~l-~~~~~sredLke~F~~~G~V~~Vd~~~g--~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~ev 92 (121)
T 1owx_A 16 KIGCLLKFSGD-LDDQTCREDLHILFSNHGEIKWIDFVRG--AKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEV 92 (121)
T ss_dssp CCCCEEEEEES-CCSSCCHHHHHHHTCSSCCEEEEECCTT--CSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEE
T ss_pred cCCeEEEEecC-CCCcCCHHHHHHHHHhcCCEEEEEEecC--CCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEE
Confidence 44678999999 888 999999999999999999999985 3479999999 899999999994 7889998888865
Q ss_pred cc
Q 007955 447 YK 448 (583)
Q Consensus 447 Ak 448 (583)
..
T Consensus 93 L~ 94 (121)
T 1owx_A 93 LE 94 (121)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.58 E-value=3.9e-08 Score=95.02 Aligned_cols=63 Identities=19% Similarity=0.223 Sum_probs=58.2
Q ss_pred CCHHHHHHHHhhcCCceeEEEecc--------CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEecc
Q 007955 386 FREEDVSNYFSIYGPVQDVRIPYQ--------QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (583)
Q Consensus 386 ~tEedLre~FsqFG~V~~VrI~~D--------ksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~Ak 448 (583)
-.+++|++.|++||+|.+|.|+.+ +++||+||+|.+.++|.+|+..|||..++||.|.|.++.
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 457899999999999999999853 588999999999999999999999999999999999875
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.44 E-value=0.00062 Score=60.78 Aligned_cols=73 Identities=7% Similarity=-0.052 Sum_probs=67.1
Q ss_pred CCcEEEEeCCCCCCCCHHHHHHHHhhc-----CCceeEEEeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 007955 372 ASRQIYLTFPADSTFREEDVSNYFSIY-----GPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (583)
Q Consensus 372 ~~rtIYVgnL~~~~~tEedLre~FsqF-----G~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~ 446 (583)
..++|-+-+| +.++++..|+.+...| |.|++|.+..| .|=|+|+|.+..+|.+|.-.++|..|.||+|+|.-
T Consensus 20 ~~rtiaL~~i-pDtvndarIr~lve~~~~i~~g~i~KI~L~pD--H~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gT 96 (117)
T 2l9w_A 20 LETLICLFPL-SDKVSPSLICQFLQEEIHINEKDIRKILLVSD--FNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGT 96 (117)
T ss_dssp TTSCEEEECC-CTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT--TTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred CCcEEEEecC-CCCCCHHHHHHHHhhhhccCccceeEEEEecC--CCceEEEEccchhhHHHHhhcCCeeecCeEEEecC
Confidence 3689999999 8999999999999999 99999999884 56799999999999999988899999999999975
Q ss_pred c
Q 007955 447 Y 447 (583)
Q Consensus 447 A 447 (583)
.
T Consensus 97 v 97 (117)
T 2l9w_A 97 I 97 (117)
T ss_dssp H
T ss_pred H
Confidence 3
No 210
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.32 E-value=0.0012 Score=58.08 Aligned_cols=76 Identities=20% Similarity=0.230 Sum_probs=66.6
Q ss_pred CCCcEEEEeCCCCCCCCHHHHHHHHhh-----cCCceeEEEeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEE
Q 007955 371 PASRQIYLTFPADSTFREEDVSNYFSI-----YGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (583)
Q Consensus 371 ~~~rtIYVgnL~~~~~tEedLre~Fsq-----FG~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk 445 (583)
...++|.|.|| +..+.++.|+-||+. =|+|.+|.... +=|+|+|.+++.|+++++. ..|.|.|.+|.|.
T Consensus 6 ~~~~~I~V~~l-Pp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~----~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV~ 79 (104)
T 2dhx_A 6 SGGVAVEVRGL-PPAVPDELLTLYFENRRRSGGGPVLSWQRLG----CGGVLTFREPADAERVLAQ-ADHELHGAQLSLR 79 (104)
T ss_dssp CCCCEEEEESC-CTTSCHHHHHHHHHCTTTTCCCCEEEEEEET----TEEEEEESSHHHHHHHHTC-SCCBSSSSBCEEE
T ss_pred cCccEEEEECC-CCCCChhHheEEEeCCCcCCCceeeEEEEcC----CcEEEEEcChHHHHHHhcC-CcceecCeEEEEE
Confidence 45689999999 889999999999998 37999998643 6799999999999999998 7899999999999
Q ss_pred ecccCCC
Q 007955 446 PYKEKGK 452 (583)
Q Consensus 446 ~Ak~K~k 452 (583)
++.++..
T Consensus 80 P~~~~~~ 86 (104)
T 2dhx_A 80 PAPPRAP 86 (104)
T ss_dssp ECCCCCC
T ss_pred cCCCCCc
Confidence 9877654
No 211
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=96.71 E-value=0.00087 Score=58.28 Aligned_cols=21 Identities=24% Similarity=1.026 Sum_probs=11.5
Q ss_pred ceeecccccccCCCCCCccCC
Q 007955 232 RPCLYFARGYCKNGSSCRFVH 252 (583)
Q Consensus 232 kpC~YFakG~Ck~G~sCry~H 252 (583)
.+|.||.+|.|++|.+|+|.|
T Consensus 14 ~lC~~f~~G~C~~G~~C~f~H 34 (98)
T 2cqe_A 14 ELCKFYITGFCARAENCPYMH 34 (98)
T ss_dssp SBCTTTTTTCCSCSTTCSSBS
T ss_pred ccCcccccCcCCCCCCCCCCC
Confidence 355555555555555555555
No 212
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.28 E-value=0.013 Score=52.82 Aligned_cols=72 Identities=11% Similarity=0.090 Sum_probs=59.5
Q ss_pred CCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEeccCCCceEEEEECCHHHHHHHHHhCCCeEEcC-eEEEEEecc
Q 007955 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCD-ARVLVKPYK 448 (583)
Q Consensus 372 ~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~mng~~L~G-R~V~Vk~Ak 448 (583)
..+.|.|-+. +.. .-..|-++|++||+|.+..... ...+-.|+|.++.+|++||.+ |+..|+| -.|-|++..
T Consensus 23 ~~~wVtVFGF-p~~-~~~~VL~~F~~~G~Iv~~~~~~--~~NWihI~Y~s~~~A~rAL~k-NG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 23 DDTWVTVFGF-PQA-SASYILLQFAQYGNILKHVMSN--TGNWMHIRYQSKLQARKALSK-DGRIFGESIMIGVKPCI 95 (119)
T ss_dssp GGGEEEEECC-CGG-GHHHHHHHHHTTSCEEEEEECS--SSSEEEEEESSHHHHHHHHTT-TTCEETTTEECEEEECC
T ss_pred CCCEEEEECC-CHH-HHHHHHHHHHhhCcEEEeccCC--CCCeEEEEeCCHHHHHHHHHh-CCeEecCCEEEEEEECC
Confidence 3577888787 433 4667889999999999998744 678999999999999999999 9999985 677777765
No 213
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.28 E-value=0.0018 Score=53.05 Aligned_cols=24 Identities=38% Similarity=0.995 Sum_probs=22.3
Q ss_pred cceeecccccccCCCCCCccCCCC
Q 007955 231 WRPCLYFARGYCKNGSSCRFVHGG 254 (583)
Q Consensus 231 ~kpC~YFakG~Ck~G~sCry~Hg~ 254 (583)
++.|.+|.+|.|+.|+.|+|.||.
T Consensus 20 ~~LC~~~~~G~C~~G~~C~FAHG~ 43 (69)
T 2d9m_A 20 FSICDRYMNGTCPEGNSCKFAHGN 43 (69)
T ss_dssp CSBCHHHHHSCCSSCSSCSSBSSH
T ss_pred cccCcccCcCCCCCCCccCCcCCH
Confidence 499999999999999999999973
No 214
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=96.23 E-value=0.0011 Score=54.54 Aligned_cols=25 Identities=36% Similarity=0.779 Sum_probs=22.5
Q ss_pred CCcceeecccccccCCCCCCccCCC
Q 007955 229 LGWRPCLYFARGYCKNGSSCRFVHG 253 (583)
Q Consensus 229 ~~~kpC~YFakG~Ck~G~sCry~Hg 253 (583)
....+|.||.+|.|++|++|+|.|.
T Consensus 14 ~k~~vCk~fl~G~C~~G~~C~fsH~ 38 (72)
T 2rhk_C 14 EKTVVCKHWLRGLCKKGDQCEFLHE 38 (72)
T ss_dssp CCCSBCHHHHTTCCCCGGGSSSBCS
T ss_pred CcCeeCHHHhcCCCCCCCCCCCccc
Confidence 3457999999999999999999995
No 215
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.18 E-value=0.0013 Score=54.61 Aligned_cols=24 Identities=38% Similarity=0.850 Sum_probs=21.9
Q ss_pred CcceeecccccccCCCCCCccCCC
Q 007955 230 GWRPCLYFARGYCKNGSSCRFVHG 253 (583)
Q Consensus 230 ~~kpC~YFakG~Ck~G~sCry~Hg 253 (583)
--.+|.||.+|.|++|++|+|.|.
T Consensus 9 k~~~C~~fl~G~C~~G~~C~fsH~ 32 (77)
T 2d9n_A 9 KTVVCKHWLRGLCKKGDQCEFLHE 32 (77)
T ss_dssp TTSBCHHHHTTCCSCTTSSSSBCS
T ss_pred cceeCHhHccCcCCCCCCCCCccc
Confidence 346999999999999999999995
No 216
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.13 E-value=0.011 Score=52.04 Aligned_cols=74 Identities=9% Similarity=0.012 Sum_probs=62.6
Q ss_pred CcEEEEeCCCCCC-CCH----HHHHHHHhhcCCceeEEEeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEec
Q 007955 373 SRQIYLTFPADST-FRE----EDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (583)
Q Consensus 373 ~rtIYVgnL~~~~-~tE----edLre~FsqFG~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~A 447 (583)
.++|+|.+| +.+ ++. +.++++|.+|+++......+ |-.=.-|.|.++++|.+|-..|++..+.|++++|..+
T Consensus 5 pntLiitnl-~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lk--SFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFg 81 (104)
T 1wey_A 5 SSGLIACVA-NDDVFSESETRAKFESLFRTYDKDTTFQYFK--SFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFA 81 (104)
T ss_dssp CCEEEEECC-CGGGGSTTTHHHHHHHHHHTTCSSCEEEEET--TTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECC
T ss_pred CceEEEecC-CHHHcCCHHHHHHHHHHHHhhCcCcceeecC--cceEEEEEeCChHHHHHHHHHhccceecCceeEEEec
Confidence 578999999 543 343 46789999999999987776 4445789999999999999999999999999999998
Q ss_pred cc
Q 007955 448 KE 449 (583)
Q Consensus 448 k~ 449 (583)
++
T Consensus 82 q~ 83 (104)
T 1wey_A 82 QT 83 (104)
T ss_dssp CC
T ss_pred CC
Confidence 74
No 217
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=96.01 E-value=0.0036 Score=51.15 Aligned_cols=27 Identities=30% Similarity=0.736 Sum_probs=23.0
Q ss_pred CCCcceeeccc-ccccCCCCCCccCCCC
Q 007955 228 GLGWRPCLYFA-RGYCKNGSSCRFVHGG 254 (583)
Q Consensus 228 ~~~~kpC~YFa-kG~Ck~G~sCry~Hg~ 254 (583)
...-++|.||. .|.|+.|.+|+|.|+.
T Consensus 9 ~~kt~~C~~f~~~G~C~~G~~C~f~H~~ 36 (77)
T 1m9o_A 9 RYKTELCRTYSESGRCRYGAKCQFAHGL 36 (77)
T ss_dssp CCCSCCCSGGGGTSCCTTTTTCSSCSSS
T ss_pred CccchhCHHhhhCCCcCCCCCccCCCCC
Confidence 44568999995 8999999999999963
No 218
>1i2t_A HYD protein; four alpha-helical domain, ligase; 1.04A {Homo sapiens} SCOP: a.144.1.1 PDB: 3ntw_A
Probab=95.82 E-value=0.0056 Score=49.05 Aligned_cols=51 Identities=24% Similarity=0.430 Sum_probs=39.7
Q ss_pred HHHHHhhhccCCCchhhhHhhhhcccCChhhHHHHhcCchHHHHHHHHHHHHHh
Q 007955 8 RIVFSRIQNLDPENASKIMGLLLLQDHGEKEMIRLAFGPEALVHSVILKARKEL 61 (583)
Q Consensus 8 ~~v~~riq~~~pe~a~ki~g~ll~qd~~e~emirla~gpd~l~~~~i~~ak~~l 61 (583)
.-+|.+|++++|++|.||.|+|| +.+..|++.|=-.||+ |++-|..|-.-|
T Consensus 7 e~Lyp~V~~~~p~~A~KITGMLL--E~d~~ell~ll~~~e~-L~~kv~EA~~vl 57 (61)
T 1i2t_A 7 ERLYPRVQAMQPAFASKITGMLL--ELSPAQLLLLLASEDS-LRARVDEAMELI 57 (61)
T ss_dssp HHHHHHHHHHCGGGHHHHHHHHT--TSCHHHHHHHHHCHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccccchhhhhc--cCCHHHHHHHHcCHHH-HHHHHHHHHHHH
Confidence 35899999999999999999998 4666778888766665 566666665544
No 219
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=95.71 E-value=0.0026 Score=51.79 Aligned_cols=22 Identities=41% Similarity=1.029 Sum_probs=20.3
Q ss_pred ceeecccccccCCCCC-CccCCC
Q 007955 232 RPCLYFARGYCKNGSS-CRFVHG 253 (583)
Q Consensus 232 kpC~YFakG~Ck~G~s-Cry~Hg 253 (583)
.+|.+|.+|.|++|++ |+|.|.
T Consensus 7 ~vC~~f~~G~C~rg~~~C~f~H~ 29 (70)
T 3d2q_A 7 EVCREYQRGNCNRGENDCRFAHP 29 (70)
T ss_dssp EBCHHHHTTCCSSCTTTCSSBCC
T ss_pred hhCHHHhcCCCCCCCCCCCCccC
Confidence 5899999999999995 999995
No 220
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.24 E-value=0.03 Score=51.23 Aligned_cols=72 Identities=17% Similarity=0.201 Sum_probs=54.7
Q ss_pred cEEEEeCCCCCCCCHHHHHHHHhhcCCcee-EEEecc-----------------CCCceEEEEECCHHHHHHHHHhCCCe
Q 007955 374 RQIYLTFPADSTFREEDVSNYFSIYGPVQD-VRIPYQ-----------------QKRMFGFVTFVYPETVKIILAKGNPH 435 (583)
Q Consensus 374 rtIYVgnL~~~~~tEedLre~FsqFG~V~~-VrI~~D-----------------ksRGfAFVtF~~~e~A~~Al~~mng~ 435 (583)
.-|-|=+. + ......+-++|++||.|.+ +.+..+ ...++--|+|+++.+|.+||.+ ||.
T Consensus 8 ~~VtVFGF-p-~~~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~-NG~ 84 (132)
T 3p3d_A 8 LAILVFGY-P-ETMANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE-NGA 84 (132)
T ss_dssp CEEEEECC-C-GGGHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT-TTC
T ss_pred eEEEEEec-C-HHHHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh-CCe
Confidence 44555555 3 3445667789999999987 322210 1357789999999999999999 999
Q ss_pred EEcCeEEEEEecc
Q 007955 436 FVCDARVLVKPYK 448 (583)
Q Consensus 436 ~L~GR~V~Vk~Ak 448 (583)
.|+|..|-|+++.
T Consensus 85 ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 85 VFNGVLLGVIPYT 97 (132)
T ss_dssp EETTEECEEEECC
T ss_pred EeCcEEEEEEECC
Confidence 9999999999884
No 221
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=95.22 E-value=0.0061 Score=51.53 Aligned_cols=23 Identities=35% Similarity=0.832 Sum_probs=20.8
Q ss_pred cceeecccccccCCCC-CCccCCC
Q 007955 231 WRPCLYFARGYCKNGS-SCRFVHG 253 (583)
Q Consensus 231 ~kpC~YFakG~Ck~G~-sCry~Hg 253 (583)
.-+|.+|.+|.|+||. .|+|.|.
T Consensus 9 ~~VCr~FlrG~C~r~d~~C~f~H~ 32 (83)
T 3d2n_A 9 LEVCREFQRGTCSRPDTECKFAHP 32 (83)
T ss_dssp EEBCTTGGGTCCCSCTTTCSSBCC
T ss_pred chhcHHHhcCCCCCCCCCCCCcCC
Confidence 3589999999999996 9999994
No 222
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=95.09 E-value=0.006 Score=52.96 Aligned_cols=23 Identities=39% Similarity=0.898 Sum_probs=21.2
Q ss_pred cceeecc-cccccCCCCCCccCCC
Q 007955 231 WRPCLYF-ARGYCKNGSSCRFVHG 253 (583)
Q Consensus 231 ~kpC~YF-akG~Ck~G~sCry~Hg 253 (583)
..+|.|| .+|.|++|..|+|.|.
T Consensus 36 ~~~C~~f~~~G~C~~G~~C~f~H~ 59 (98)
T 2cqe_A 36 DFPCKLYHTTGNCINGDDCMFSHD 59 (98)
T ss_dssp SSBCSHHHHTSCCSSCTTCSSBCC
T ss_pred CCcCcCcccCCcCCCCCCCcccCC
Confidence 5799999 5999999999999994
No 223
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=94.98 E-value=0.0042 Score=50.75 Aligned_cols=24 Identities=33% Similarity=0.780 Sum_probs=0.0
Q ss_pred cceee-cccccccCCCCCCccCCCC
Q 007955 231 WRPCL-YFARGYCKNGSSCRFVHGG 254 (583)
Q Consensus 231 ~kpC~-YFakG~Ck~G~sCry~Hg~ 254 (583)
-++|. |+..|+|++|..|+|.|+.
T Consensus 50 ~~~C~~f~~~G~C~~G~~C~f~H~~ 74 (77)
T 1m9o_A 50 TELCHKFKLQGRCPYGSRCHFIHNP 74 (77)
T ss_dssp -------------------------
T ss_pred CCcccchhhCcCCCCcCcCCCCCCC
Confidence 47897 5569999999999999963
No 224
>2dyd_A Poly(A)-binding protein; alpha helical protein, RNA binding protein; NMR {Triticum aestivum}
Probab=94.93 E-value=0.01 Score=50.55 Aligned_cols=51 Identities=24% Similarity=0.460 Sum_probs=40.0
Q ss_pred HHHHHhhhccCCCchhhhHhhhhcccCChhhHHHHhcCchHHHHHHHHHHHHHh
Q 007955 8 RIVFSRIQNLDPENASKIMGLLLLQDHGEKEMIRLAFGPEALVHSVILKARKEL 61 (583)
Q Consensus 8 ~~v~~riq~~~pe~a~ki~g~ll~qd~~e~emirla~gpd~l~~~~i~~ak~~l 61 (583)
.-+|.+|++++||+|.||.|+||= .+..|++.|=-.||+ |++-|..|-.-|
T Consensus 28 E~LyplV~~~~p~~AgKITGMLLE--md~~Ell~Lles~e~-L~~kv~EA~~vL 78 (85)
T 2dyd_A 28 ENLYPLVDQLEHDQAAKVTGMLLE--MDQTEVLHLLESPDA-LKAKVAEAMEVL 78 (85)
T ss_dssp HHHHHHHCCSCHHHHHHHHHHHHH--HCHHHHHHHTTCSHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhCccccchhhhhhhc--CCHHHHHHHHcCHHH-HHHHHHHHHHHH
Confidence 458999999999999999999985 556778888766665 566666666555
No 225
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=94.93 E-value=0.0062 Score=49.54 Aligned_cols=23 Identities=22% Similarity=0.762 Sum_probs=21.0
Q ss_pred CcceeecccccccCCCCCCccCCC
Q 007955 230 GWRPCLYFARGYCKNGSSCRFVHG 253 (583)
Q Consensus 230 ~~kpC~YFakG~Ck~G~sCry~Hg 253 (583)
...+|.+|.||.|.+| +|+|+|.
T Consensus 41 ~~~vC~~flkG~C~r~-~C~y~H~ 63 (70)
T 3d2q_A 41 TVTVCMDYIKGRCSRE-KCKYFHP 63 (70)
T ss_dssp EEEBCHHHHTTCCCCT-TCCSBCC
T ss_pred cceeccccCcCCCCCC-CcCeeCC
Confidence 4678999999999999 9999994
No 226
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.85 E-value=0.0054 Score=53.32 Aligned_cols=23 Identities=43% Similarity=0.979 Sum_probs=21.0
Q ss_pred cceeecccccccCCCC-CCccCCC
Q 007955 231 WRPCLYFARGYCKNGS-SCRFVHG 253 (583)
Q Consensus 231 ~kpC~YFakG~Ck~G~-sCry~Hg 253 (583)
..+|.||.+|.|++|+ .|+|.|.
T Consensus 20 ~~VCr~FlrG~C~rgd~~C~FsH~ 43 (98)
T 2e5s_A 20 LEVCREFQRGNCARGETDCRFAHP 43 (98)
T ss_dssp EEBCSHHHHTCCSSHHHHCSSBCC
T ss_pred hhhhHHHhcCcCCCCCCCCCCcCC
Confidence 4589999999999999 7999995
No 227
>1ifw_A Polyadenylate-binding protein, cytoplasmic and nuclear; all-helical domain, RNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.144.1.1
Probab=94.55 E-value=0.02 Score=49.43 Aligned_cols=52 Identities=23% Similarity=0.324 Sum_probs=41.4
Q ss_pred HHHHHhhhc--cCCCchhhhHhhhhcccCChhhHHHHhcCchHHHHHHHHHHHHHhh
Q 007955 8 RIVFSRIQN--LDPENASKIMGLLLLQDHGEKEMIRLAFGPEALVHSVILKARKELV 62 (583)
Q Consensus 8 ~~v~~riq~--~~pe~a~ki~g~ll~qd~~e~emirla~gpd~l~~~~i~~ak~~l~ 62 (583)
.-+|.+|++ ++||+|.||.|+|| +.+..|++.|=-.|| +|++-|..|-.-|.
T Consensus 26 E~LyplV~~~~~~pelAgKITGMLL--Emd~~ElL~LLes~e-~L~~kV~EA~~vL~ 79 (92)
T 1ifw_A 26 EQLYKKVSAKTSNEEAAGKITGMIL--DLPPQEVFPLLESDE-LFEQHYKEASAAYE 79 (92)
T ss_dssp HHHHHHHGGGCCCHHHHHHHHHHHT--TSCHHHHHHHHTCHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCccccchhhHhHh--cCCHHHHHHHHcCHH-HHHHHHHHHHHHHH
Confidence 357999999 99999999999998 577778888866555 56777777766664
No 228
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=94.34 E-value=0.022 Score=61.98 Aligned_cols=56 Identities=16% Similarity=0.326 Sum_probs=42.6
Q ss_pred CcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEeccCCCceEEEEECCHHHHHHHHHh
Q 007955 373 SRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAK 431 (583)
Q Consensus 373 ~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~ 431 (583)
.|.|||. . +..+++.+|.+||++||+|.++.+-.+ ..-||.|+|.+.++++.++..
T Consensus 53 ~rsv~v~-~-~~~~~~~~l~~y~~~~g~i~~~~~~~~-~g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIH-C-PEKISENKFLKYLSQFGPINNHFFYES-FGLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEE-E-CCC---CHHHHHHGGGSCCCCEEEECS-SSEEEEEECC---CCHHHHSS
T ss_pred cceEEEE-c-CCCCCHHHHHHHHHhcCCcceEEEEcc-CCeEEEEEeCCHHHHHHHHhc
Confidence 5789998 4 578999999999999999999987664 346999999999999988766
No 229
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.32 E-value=0.0094 Score=51.83 Aligned_cols=24 Identities=21% Similarity=0.668 Sum_probs=21.6
Q ss_pred CCcceeecccccccCCCCCCccCCC
Q 007955 229 LGWRPCLYFARGYCKNGSSCRFVHG 253 (583)
Q Consensus 229 ~~~kpC~YFakG~Ck~G~sCry~Hg 253 (583)
.....|.||.||.|.|| +|+|.|.
T Consensus 54 ~~~~vC~~flkG~C~r~-~C~y~H~ 77 (98)
T 2e5s_A 54 NTVTVCMDYIKGRCMRE-KCKYFHP 77 (98)
T ss_dssp CEEEBCHHHHHTCCCCT-TCCSBCC
T ss_pred CccccchhhccCCCCCC-CcCccCC
Confidence 35679999999999999 9999994
No 230
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=94.26 E-value=0.011 Score=50.76 Aligned_cols=23 Identities=35% Similarity=0.875 Sum_probs=21.0
Q ss_pred cceeecccccccCCCC-CCccCCC
Q 007955 231 WRPCLYFARGYCKNGS-SCRFVHG 253 (583)
Q Consensus 231 ~kpC~YFakG~Ck~G~-sCry~Hg 253 (583)
.-+|.+|.+|.|+||+ .|+|.|-
T Consensus 17 ~~VCrdFlrG~C~r~d~~CrfsH~ 40 (89)
T 2rpp_A 17 LEVCRQFQRGTCSRSDEECKFAHP 40 (89)
T ss_dssp ECBCHHHHHTCCCCCTTTSSSBCC
T ss_pred hhhchHHhcCCCCCCCCCCCCcCC
Confidence 4589999999999998 9999994
No 231
>1nmr_A Poly(A)-binding protein; all helical domain, peptide binding protein; NMR {Trypanosoma cruzi} SCOP: a.144.1.1
Probab=94.10 E-value=0.013 Score=49.88 Aligned_cols=51 Identities=25% Similarity=0.447 Sum_probs=39.5
Q ss_pred HHHHHhhhccCCCchhhhHhhhhcccCChhhHHHHhcCchHHHHHHHHHHHHHh
Q 007955 8 RIVFSRIQNLDPENASKIMGLLLLQDHGEKEMIRLAFGPEALVHSVILKARKEL 61 (583)
Q Consensus 8 ~~v~~riq~~~pe~a~ki~g~ll~qd~~e~emirla~gpd~l~~~~i~~ak~~l 61 (583)
.-+|.+|++++||.|.||.|+||= .+..|++.|=-.|| +|++-|..|-.-|
T Consensus 29 E~LyplV~~~~p~~AgKITGMLLE--md~~ElL~Lle~~e-~L~~kV~EA~~vL 79 (85)
T 1nmr_A 29 ERLYNHIVAINPAAAAKVTGMLLE--MDNGEILNLLDTPG-LLDAKVQEALEVL 79 (85)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHCSC--THHHHHHTTCCTHH-HHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCccccchhhHhHhc--CCHHHHHHHHcCHH-HHHHHHHHHHHHH
Confidence 357999999999999999999984 56667887765554 5677777776555
No 232
>3kuj_A Polyadenylate-binding protein 1; protein-protein complex, methylation, mRNA processing, mRNA nucleus, phosphoprotein, RNA-binding, spliceosome; 1.40A {Homo sapiens} PDB: 3ktr_A 3kui_A 3ktp_A 3kus_A* 3kut_A 3pkn_A 2rqg_B 2rqh_B 3kur_A 3pth_A 2x04_A
Probab=93.94 E-value=0.044 Score=46.91 Aligned_cols=52 Identities=29% Similarity=0.374 Sum_probs=40.4
Q ss_pred HHHHhhhccCCCchhhhHhhhhcccCChhhHHHHhcCchHHHHHHHHHHHHHhhh
Q 007955 9 IVFSRIQNLDPENASKIMGLLLLQDHGEKEMIRLAFGPEALVHSVILKARKELVR 63 (583)
Q Consensus 9 ~v~~riq~~~pe~a~ki~g~ll~qd~~e~emirla~gpd~l~~~~i~~ak~~l~~ 63 (583)
-+|.+|++++|+.|.||.|+||= .+..|++.|==.| ..|++-|..|-.-|..
T Consensus 27 ~Lyp~V~~~~p~~A~KITGMLLE--md~~Ell~lle~~-e~L~~kV~EA~~vL~~ 78 (88)
T 3kuj_A 27 RLFPLIQAMHPTLAGKITGMLLE--IDNSELLHMLESP-ESLRSKVDEAVAVLQA 78 (88)
T ss_dssp HHHHHHHHHCTTTHHHHHHHHTT--SCHHHHHHHHHCH-HHHHHHHHHHHHHHHH
T ss_pred HhHHHHHhhCCCccchhhhHhhc--CCHHHHHHHHcCH-HHHHHHHHHHHHHHHH
Confidence 58999999999999999999985 5566788776555 4567777777666543
No 233
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=93.38 E-value=0.02 Score=48.39 Aligned_cols=23 Identities=22% Similarity=0.667 Sum_probs=21.1
Q ss_pred CcceeecccccccCCCCCCccCCC
Q 007955 230 GWRPCLYFARGYCKNGSSCRFVHG 253 (583)
Q Consensus 230 ~~kpC~YFakG~Ck~G~sCry~Hg 253 (583)
.+-.|.+|.||.|.|| +|+|+|.
T Consensus 42 ~~~vC~dflkG~C~r~-~C~y~H~ 64 (83)
T 3d2n_A 42 RVIACFDSLKGRCSRE-NCKYLHP 64 (83)
T ss_dssp EEECCHHHHTTCCCCS-SCSSCCC
T ss_pred ceeehhHhhhccccCC-CcceeCC
Confidence 4679999999999999 9999994
No 234
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=93.35 E-value=0.031 Score=50.41 Aligned_cols=32 Identities=6% Similarity=-0.055 Sum_probs=26.5
Q ss_pred eEEEecc--CCCceEEEEECCHHHHHHHHHhCCC
Q 007955 403 DVRIPYQ--QKRMFGFVTFVYPETVKIILAKGNP 434 (583)
Q Consensus 403 ~VrI~~D--ksRGfAFVtF~~~e~A~~Al~~mng 434 (583)
.+.|+.+ +++|||||+|.+.++|++|++.+++
T Consensus 2 ~~kl~ln~~~~~G~~fV~f~~~~~A~~al~~~~~ 35 (158)
T 2kn4_A 2 QYKLILNGKTLKGETTTEAVDAATAEKVFKQYAN 35 (158)
T ss_dssp EEEEEEECSSCEEEEEEECSSHHHHHHHHHHHHH
T ss_pred cEEEEecCccccchhHHHHHHHHhHHHHHHhhcc
Confidence 4556655 6899999999999999999988653
No 235
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.06 E-value=0.025 Score=46.72 Aligned_cols=23 Identities=26% Similarity=0.873 Sum_probs=20.6
Q ss_pred cceeecccc-cccCCCCCCccCCCC
Q 007955 231 WRPCLYFAR-GYCKNGSSCRFVHGG 254 (583)
Q Consensus 231 ~kpC~YFak-G~Ck~G~sCry~Hg~ 254 (583)
..+|.||.+ |.|. |..|+|.|..
T Consensus 38 ~~~C~~f~~~G~C~-~~~C~f~H~~ 61 (77)
T 2d9n_A 38 MPECYFYSKFGECS-NKECPFLHID 61 (77)
T ss_dssp SCBCHHHHHTCCCC-CSSCSSBCCC
T ss_pred CCCCcccCCCCccC-CCCeeccCCC
Confidence 458999999 9999 8999999964
No 236
>1g9l_A Polyadenylate-binding protein 1; all-helical domain, RNA binding protein; NMR {Homo sapiens} SCOP: a.144.1.1 PDB: 1jgn_A 1jh4_A
Probab=92.89 E-value=0.044 Score=50.80 Aligned_cols=51 Identities=31% Similarity=0.421 Sum_probs=40.8
Q ss_pred HHHhhhccCCCchhhhHhhhhcccCChhhHHHHhcCchHHHHHHHHHHHHHhhh
Q 007955 10 VFSRIQNLDPENASKIMGLLLLQDHGEKEMIRLAFGPEALVHSVILKARKELVR 63 (583)
Q Consensus 10 v~~riq~~~pe~a~ki~g~ll~qd~~e~emirla~gpd~l~~~~i~~ak~~l~~ 63 (583)
+|-+|++++||+|.||.|+||= .+..|++.|=-.|| +|++.|..|-.-|.-
T Consensus 74 LyplV~~~~p~~A~KITGMLLE--md~~ElL~LLes~e-~L~~kV~EA~~vL~~ 124 (144)
T 1g9l_A 74 LFPLIQAMHPTLAGKITGMLLE--IDNSELLHMLESPE-SLRSKVDEAVAVLQA 124 (144)
T ss_dssp SHHHHHHHTTSCCSSHHHHTTT--SSSHHHHHHHHCTT-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCccccchhhhhhcc--CCHHHHHHHHcCHH-HHHHHHHHHHHHHHH
Confidence 6899999999999999999985 55668888876665 567777777777753
No 237
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=92.81 E-value=0.027 Score=46.15 Aligned_cols=24 Identities=29% Similarity=0.879 Sum_probs=21.2
Q ss_pred Ccceeecccc-cccCCCCCCccCCCC
Q 007955 230 GWRPCLYFAR-GYCKNGSSCRFVHGG 254 (583)
Q Consensus 230 ~~kpC~YFak-G~Ck~G~sCry~Hg~ 254 (583)
...+|.||.+ |.|.+ ..|+|.|..
T Consensus 43 ~~~~C~~f~~~G~C~~-~~C~y~H~~ 67 (72)
T 2rhk_C 43 KMSECYFYSKFGECSN-KECPFLHID 67 (72)
T ss_dssp SCCBCHHHHHHSCCSB-TTCCSBCCC
T ss_pred cCCcccccCCCCCCCC-CCeeccCCC
Confidence 3568999999 99999 999999953
No 238
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=92.47 E-value=0.31 Score=42.58 Aligned_cols=53 Identities=19% Similarity=0.313 Sum_probs=42.8
Q ss_pred cEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEeccCCCceEEEEECCHHHHHHHHHhC
Q 007955 374 RQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKG 432 (583)
Q Consensus 374 rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~m 432 (583)
+-++| .. |.++...||.++|+.|| -..|+.+-| --|||.|.+++.|..|+..+
T Consensus 17 HVf~l-~F-P~ewKt~DI~~lFs~fg-gv~I~WidD---TsAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 17 HVLHV-TF-PKEWKTSDLYQLFSAFG-NIQISWIDD---TSAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp SEEEE-EC-CTTCCHHHHHHHHTTTC-SCCCEEEET---TEEEEECSCHHHHHHHHHHH
T ss_pred eEEEE-eC-ChhhhhHHHHHHhhccC-CEEEEEEcC---CeEEEEecCHHHHHHHHHhc
Confidence 44555 66 68999999999999999 445665654 47999999999999999875
No 239
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=92.16 E-value=0.38 Score=41.19 Aligned_cols=65 Identities=8% Similarity=0.068 Sum_probs=54.0
Q ss_pred cEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc------CCCceEEEEECCHHHHHHHHHhCCCeEEcC
Q 007955 374 RQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ------QKRMFGFVTFVYPETVKIILAKGNPHFVCD 439 (583)
Q Consensus 374 rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D------ksRGfAFVtF~~~e~A~~Al~~mng~~L~G 439 (583)
.||.|.+| +..+||+++.+..+.+.++.....+.+ ..-.-|+|.|.+.+++..-.+..+|+.+.+
T Consensus 2 ~KvVIRrL-PP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRL-PPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEE-CTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCC-CCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 58999999 899999999999999988776666554 123569999999999999999988887643
No 240
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=90.17 E-value=0.068 Score=45.71 Aligned_cols=23 Identities=22% Similarity=0.667 Sum_probs=21.0
Q ss_pred CcceeecccccccCCCCCCccCCC
Q 007955 230 GWRPCLYFARGYCKNGSSCRFVHG 253 (583)
Q Consensus 230 ~~kpC~YFakG~Ck~G~sCry~Hg 253 (583)
.+-.|.+|.||.|.|+ +|+|+|.
T Consensus 50 ~~~vC~dflkG~C~r~-~Cky~H~ 72 (89)
T 2rpp_A 50 RVIACFDSLKGRCSRE-NCKYLHP 72 (89)
T ss_dssp BEEBCHHHHHTCCCCT-TCCSBCC
T ss_pred ceeeehhhhhCcCCCC-CcceecC
Confidence 4778999999999999 9999994
No 241
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=89.29 E-value=0.34 Score=42.38 Aligned_cols=54 Identities=20% Similarity=0.323 Sum_probs=43.3
Q ss_pred cEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEeccCCCceEEEEECCHHHHHHHHHhCC
Q 007955 374 RQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGN 433 (583)
Q Consensus 374 rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~mn 433 (583)
.-++| .. |.++...||..+|+.|| -..|+.+-| --|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~F-P~ewKt~Di~~lFs~fg-gv~I~WidD---TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TF-PKEWKTSDLYQLFSAFG-NIQISWIDD---TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-EC-CTTCCHHHHHHHTTTSE-EEEEEEEET---TEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eC-ChhhhhHHHHHHHhccC-CEEEEEEcC---CeEEEEecCHHHHHHHHHhcc
Confidence 34566 66 68999999999999999 445666654 479999999999999999753
No 242
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=88.38 E-value=0.14 Score=46.01 Aligned_cols=40 Identities=10% Similarity=-0.113 Sum_probs=36.6
Q ss_pred CCCceEEEEECCHHHHHHHHHhC-CCeEEcCeEEEEEecccC
Q 007955 410 QKRMFGFVTFVYPETVKIILAKG-NPHFVCDARVLVKPYKEK 450 (583)
Q Consensus 410 ksRGfAFVtF~~~e~A~~Al~~m-ng~~L~GR~V~Vk~Ak~K 450 (583)
+-+|+++|+|.+.++|++|++.+ |+..++| .+.|.++..+
T Consensus 11 ~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~ 51 (150)
T 2i2y_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKT 51 (150)
T ss_dssp SSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTE
T ss_pred cccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCc
Confidence 67899999999999999999999 9999999 9999987653
No 243
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=79.94 E-value=0.47 Score=36.42 Aligned_cols=25 Identities=32% Similarity=0.571 Sum_probs=21.4
Q ss_pred CCcceeecc-cccccCCCCCCccCCC
Q 007955 229 LGWRPCLYF-ARGYCKNGSSCRFVHG 253 (583)
Q Consensus 229 ~~~kpC~YF-akG~Ck~G~sCry~Hg 253 (583)
-...+|.-| +-|+|.+|..|.+.|.
T Consensus 18 ~~~~iC~~FSayGwCp~G~~Cp~SHD 43 (50)
T 2fc6_A 18 HPTSICDNFSAYGWCPLGPQCPQSHD 43 (50)
T ss_dssp CCSCBCSHHHHTCCCTTGGGCSSBCC
T ss_pred cccchhhhccccccCCCCCCCCcccc
Confidence 456789766 7999999999999995
No 244
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=75.69 E-value=3.4 Score=35.81 Aligned_cols=67 Identities=7% Similarity=0.077 Sum_probs=47.4
Q ss_pred CCcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEecc------CCCceEEEEECCHHHHHHHHHhCCCeEEcC
Q 007955 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ------QKRMFGFVTFVYPETVKIILAKGNPHFVCD 439 (583)
Q Consensus 372 ~~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~D------ksRGfAFVtF~~~e~A~~Al~~mng~~L~G 439 (583)
-+-||.|..| |..+||+++.+.++.+=++.....+.+ ..-.-|+|.|.+.+++..-.+..+++.+-+
T Consensus 8 ~~~KvVIRrL-PP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 8 HSHMVVIRRL-PPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCCCEEEECC-CSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred cceeEEEeCC-CCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 3568999999 889999988776665433222121222 122458999999999999999988887743
No 245
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=66.76 E-value=11 Score=41.14 Aligned_cols=55 Identities=20% Similarity=0.339 Sum_probs=44.5
Q ss_pred CcEEEEeCCCCCCCCHHHHHHHHhhcCCceeEEEeccCCCceEEEEECCHHHHHHHHHhCC
Q 007955 373 SRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGN 433 (583)
Q Consensus 373 ~rtIYVgnL~~~~~tEedLre~FsqFG~V~~VrI~~DksRGfAFVtF~~~e~A~~Al~~mn 433 (583)
...++|+ . +..+...+|.+.|+.||. .+|+.+. ...|||.|.+.+.|..++..++
T Consensus 440 ~~vl~v~-f-~~~~~~~~i~~~fs~fg~-v~V~wid---dt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-F-PKEWKTSDLYQLFSAFGN-IQISWID---DTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-C-CTTCCHHHHHHHGGGGCC-CEEEECS---SSEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-C-CCCCCHHHHHHHHHhcCC-EEEEEEc---CCeEEEEECCHHHHHHHHHHHH
Confidence 4567777 4 467789999999999995 4666654 4579999999999999999874
No 246
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=42.39 E-value=7.6 Score=38.43 Aligned_cols=25 Identities=20% Similarity=0.484 Sum_probs=21.8
Q ss_pred CCcceeeccccccc----CCCCCCccCCC
Q 007955 229 LGWRPCLYFARGYC----KNGSSCRFVHG 253 (583)
Q Consensus 229 ~~~kpC~YFakG~C----k~G~sCry~Hg 253 (583)
-.+-.|+||.-|-| ..|+.|+|.|.
T Consensus 87 ~~LHLCK~~l~G~C~~~~~~~~~Ck~SHd 115 (229)
T 3u9g_A 87 DSLHLCKLNLLGRCHYAQSQRNLCKYSHD 115 (229)
T ss_dssp CSBCCCHHHHTTCCGGGTCCSSCCSSCSC
T ss_pred cceeechhhhcCcCCcccCCCCCcccccc
Confidence 36889999999999 46799999994
No 247
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=41.75 E-value=16 Score=36.15 Aligned_cols=23 Identities=30% Similarity=0.592 Sum_probs=21.1
Q ss_pred CcceeecccccccCCCCCCccCCC
Q 007955 230 GWRPCLYFARGYCKNGSSCRFVHG 253 (583)
Q Consensus 230 ~~kpC~YFakG~Ck~G~sCry~Hg 253 (583)
-+-+|.||-+|.|+. .+|+-.|.
T Consensus 174 kLHIC~~Fl~G~C~f-~~CkRsH~ 196 (229)
T 3u9g_A 174 RLHICEHFTRGNCSY-LNCLRSHN 196 (229)
T ss_dssp SBCSCHHHHTTCCCC-SSCSSCCC
T ss_pred ceeccchhhcCCcCC-CCccCccC
Confidence 478999999999999 89999993
No 248
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=32.91 E-value=10 Score=37.44 Aligned_cols=23 Identities=39% Similarity=0.803 Sum_probs=0.0
Q ss_pred CCCcceeecccccccCCCCCCccCC
Q 007955 228 GLGWRPCLYFARGYCKNGSSCRFVH 252 (583)
Q Consensus 228 ~~~~kpC~YFakG~Ck~G~sCry~H 252 (583)
+..|.||-|=- -|.-|+.|+|.|
T Consensus 189 ~~~~~~~~~~~--~~~~~~~~~~~~ 211 (223)
T 3v33_A 189 EHRKQPCPYGR--KCTYGIKCRFFH 211 (223)
T ss_dssp -------------------------
T ss_pred ccCCCCCCCCc--ccccCCcceecC
Confidence 44688999964 699999999999
No 249
>3dve_B Voltage-dependent N-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.35A {Oryctolagus cuniculus} PDB: 3dvj_B
Probab=32.52 E-value=8.9 Score=24.97 Aligned_cols=14 Identities=21% Similarity=0.427 Sum_probs=12.1
Q ss_pred chhhhHhhhhcccC
Q 007955 21 NASKIMGLLLLQDH 34 (583)
Q Consensus 21 ~a~ki~g~ll~qd~ 34 (583)
++.||-+.|||||+
T Consensus 1 ~VGKiYAallI~d~ 14 (23)
T 3dve_B 1 HMGKVYAALMIFDF 14 (26)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHH
Confidence 57899999999986
No 250
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=30.17 E-value=10 Score=24.68 Aligned_cols=14 Identities=21% Similarity=0.408 Sum_probs=12.5
Q ss_pred chhhhHhhhhcccC
Q 007955 21 NASKIMGLLLLQDH 34 (583)
Q Consensus 21 ~a~ki~g~ll~qd~ 34 (583)
++.||-+.|||||+
T Consensus 2 ~VGKiYA~llI~d~ 15 (23)
T 3dvk_B 2 HMGKIYAAMMIMDY 15 (26)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHH
Confidence 67899999999986
No 251
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=24.73 E-value=1e+02 Score=24.11 Aligned_cols=69 Identities=13% Similarity=0.087 Sum_probs=43.0
Q ss_pred EEEEeCCCCCCCCHHHHHHHHhhcCCce-----eEEEeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEecc
Q 007955 375 QIYLTFPADSTFREEDVSNYFSIYGPVQ-----DVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (583)
Q Consensus 375 tIYVgnL~~~~~tEedLre~FsqFG~V~-----~VrI~~DksRGfAFVtF~~~e~A~~Al~~mng~~L~GR~V~Vk~Ak 448 (583)
++||..=....++..+|-.++..-+.|. .|+|. -.|.||.-.. +.++.+++.+++..+.|+.+.|..++
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~----d~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIM----DNASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEEC----SSCEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEe----CCcEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 4555443245667777777777655443 45553 3599998765 45788899999999999999998764
No 252
>3e50_C Protransforming growth factor alpha; IDE, TGF-alpha, cytoplasm, hydrolase, metal-binding, metalloprotease, polymorphism, protease, zinc; 2.30A {Homo sapiens} SCOP: g.3.11.1 PDB: 1yuf_A 1yug_A 2tgf_A 1mox_C 3tgf_A 4tgf_A
Probab=22.65 E-value=19 Score=27.29 Aligned_cols=21 Identities=29% Similarity=0.727 Sum_probs=17.1
Q ss_pred ceeecccccccCCCCCCccCCC
Q 007955 232 RPCLYFARGYCKNGSSCRFVHG 253 (583)
Q Consensus 232 kpC~YFakG~Ck~G~sCry~Hg 253 (583)
.||.=-.++||-|| .|.|.++
T Consensus 6 ~~C~~~~~~yC~nG-~C~~~~~ 26 (50)
T 3e50_C 6 NDCPDSHTQFCFHG-TCRFLVQ 26 (50)
T ss_pred cccChhhcCcccCC-EEeeccC
Confidence 46666668999999 9999874
No 253
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=22.15 E-value=1.5e+02 Score=24.00 Aligned_cols=57 Identities=18% Similarity=0.195 Sum_probs=42.6
Q ss_pred hhhHHHHHHhhhccCCCchh--hhHhhhhcccCChhhHHH-----HhcCch----HHHHHHHHHHHHH
Q 007955 4 YEATRIVFSRIQNLDPENAS--KIMGLLLLQDHGEKEMIR-----LAFGPE----ALVHSVILKARKE 60 (583)
Q Consensus 4 ~e~t~~v~~riq~~~pe~a~--ki~g~ll~qd~~e~emir-----la~gpd----~l~~~~i~~ak~~ 60 (583)
++..+-+|.+.-++||+|+. -.+|.+.+|...=++-|. |...|+ ..|..-|.+||..
T Consensus 25 ~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~~~~i~~~I~~A~~~ 92 (93)
T 3bee_A 25 TDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLDRVTIIESINKAKKL 92 (93)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhc
Confidence 45667789999999999965 556778887666666665 666776 5788888888764
No 254
>2rnl_A Amphiregulin; AR, colorectum cell-derived growth factor, EGF-like domain, CRDGF, cytokine, glycoprotein, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=21.53 E-value=17 Score=27.50 Aligned_cols=21 Identities=24% Similarity=0.853 Sum_probs=17.9
Q ss_pred ceeecccccccCCCCCCccCCC
Q 007955 232 RPCLYFARGYCKNGSSCRFVHG 253 (583)
Q Consensus 232 kpC~YFakG~Ck~G~sCry~Hg 253 (583)
.||.=-.++||.|| .|.|.++
T Consensus 10 ~~C~~~~~~yC~nG-~C~~i~~ 30 (50)
T 2rnl_A 10 NPCNAEFQNFCIHG-ECKYIEH 30 (50)
T ss_dssp CTTTTTGGGTCSSS-EEEEETT
T ss_pred cccCchhhCcCCCC-EEEEecC
Confidence 58876678999999 9999985
Done!