BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 007956
         (583 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1DQ8|A Chain A, Complex Of The Catalytic Portion Of Human Hmg-Coa
           Reductase With Hmg And Coa
 pdb|1DQ8|B Chain B, Complex Of The Catalytic Portion Of Human Hmg-Coa
           Reductase With Hmg And Coa
 pdb|1DQ8|C Chain C, Complex Of The Catalytic Portion Of Human Hmg-Coa
           Reductase With Hmg And Coa
 pdb|1DQ8|D Chain D, Complex Of The Catalytic Portion Of Human Hmg-Coa
           Reductase With Hmg And Coa
 pdb|1DQ9|A Chain A, Complex Of Catalytic Portion Of Human Hmg-Coa Reductase
           With Hmg-Coa
 pdb|1DQ9|B Chain B, Complex Of Catalytic Portion Of Human Hmg-Coa Reductase
           With Hmg-Coa
 pdb|1DQ9|C Chain C, Complex Of Catalytic Portion Of Human Hmg-Coa Reductase
           With Hmg-Coa
 pdb|1DQ9|D Chain D, Complex Of Catalytic Portion Of Human Hmg-Coa Reductase
           With Hmg-Coa
 pdb|1DQA|A Chain A, Complex Of The Catalytic Portion Of Human Hmg-Coa
           Reductase With Hmg, Coa, And Nadp+
 pdb|1DQA|B Chain B, Complex Of The Catalytic Portion Of Human Hmg-Coa
           Reductase With Hmg, Coa, And Nadp+
 pdb|1DQA|C Chain C, Complex Of The Catalytic Portion Of Human Hmg-Coa
           Reductase With Hmg, Coa, And Nadp+
 pdb|1DQA|D Chain D, Complex Of The Catalytic Portion Of Human Hmg-Coa
           Reductase With Hmg, Coa, And Nadp+
 pdb|1HW8|A Chain A, Complex Of The Catalytic Portion Of Human Hmg-Coa
           Reductase With Compactin (Also Known As Mevastatin)
 pdb|1HW8|B Chain B, Complex Of The Catalytic Portion Of Human Hmg-Coa
           Reductase With Compactin (Also Known As Mevastatin)
 pdb|1HW8|C Chain C, Complex Of The Catalytic Portion Of Human Hmg-Coa
           Reductase With Compactin (Also Known As Mevastatin)
 pdb|1HW8|D Chain D, Complex Of The Catalytic Portion Of Human Hmg-Coa
           Reductase With Compactin (Also Known As Mevastatin)
 pdb|1HW9|A Chain A, Complex Of The Catalytic Portion Of Human Hmg-Coa
           Reductase With Simvastatin
 pdb|1HW9|B Chain B, Complex Of The Catalytic Portion Of Human Hmg-Coa
           Reductase With Simvastatin
 pdb|1HW9|C Chain C, Complex Of The Catalytic Portion Of Human Hmg-Coa
           Reductase With Simvastatin
 pdb|1HW9|D Chain D, Complex Of The Catalytic Portion Of Human Hmg-Coa
           Reductase With Simvastatin
 pdb|1HWI|A Chain A, Complex Of The Catalytic Portion Of Human Hmg-Coa
           Reductase With Fluvastatin
 pdb|1HWI|B Chain B, Complex Of The Catalytic Portion Of Human Hmg-Coa
           Reductase With Fluvastatin
 pdb|1HWI|C Chain C, Complex Of The Catalytic Portion Of Human Hmg-Coa
           Reductase With Fluvastatin
 pdb|1HWI|D Chain D, Complex Of The Catalytic Portion Of Human Hmg-Coa
           Reductase With Fluvastatin
 pdb|1HWJ|A Chain A, Complex Of The Catalytic Portion Of Human Hmg-Coa
           Reductase With Cerivastatin
 pdb|1HWJ|B Chain B, Complex Of The Catalytic Portion Of Human Hmg-Coa
           Reductase With Cerivastatin
 pdb|1HWJ|C Chain C, Complex Of The Catalytic Portion Of Human Hmg-Coa
           Reductase With Cerivastatin
 pdb|1HWJ|D Chain D, Complex Of The Catalytic Portion Of Human Hmg-Coa
           Reductase With Cerivastatin
 pdb|1HWK|A Chain A, Complex Of The Catalytic Portion Of Human Hmg-Coa
           Reductase With Atorvastatin
 pdb|1HWK|B Chain B, Complex Of The Catalytic Portion Of Human Hmg-Coa
           Reductase With Atorvastatin
 pdb|1HWK|C Chain C, Complex Of The Catalytic Portion Of Human Hmg-Coa
           Reductase With Atorvastatin
 pdb|1HWK|D Chain D, Complex Of The Catalytic Portion Of Human Hmg-Coa
           Reductase With Atorvastatin
 pdb|1HWL|A Chain A, Complex Of The Catalytic Portion Of Human Hmg-Coa
           Reductase With Rosuvastatin (Formally Known As Zd4522)
 pdb|1HWL|B Chain B, Complex Of The Catalytic Portion Of Human Hmg-Coa
           Reductase With Rosuvastatin (Formally Known As Zd4522)
 pdb|1HWL|C Chain C, Complex Of The Catalytic Portion Of Human Hmg-Coa
           Reductase With Rosuvastatin (Formally Known As Zd4522)
 pdb|1HWL|D Chain D, Complex Of The Catalytic Portion Of Human Hmg-Coa
           Reductase With Rosuvastatin (Formally Known As Zd4522)
          Length = 467

 Score =  492 bits (1266), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 240/409 (58%), Positives = 307/409 (75%), Gaps = 3/409 (0%)

Query: 169 DEEMIKSVVDGTTPSYSLESKLGDCRRAAAIRREALQR--STGKSLHGLPLEGFDYGSIL 226
           D E+I+ V     P+Y LE+ +    R  +IRR+ L +  S   SL  LP   ++Y  ++
Sbjct: 43  DAEIIQLVNAKHIPAYKLETLIETHERGVSIRRQLLSKKLSEPSSLQYLPYRDYNYSLVM 102

Query: 227 GQCCEMPVGYVQIPVGIAGPLLLDGREYSVPMATTEGCLVASANRGCKAIHLSGGATSVL 286
           G CCE  +GY+ IPVG+AGPL LD +E+ VPMATTEGCLVAS NRGC+AI L GGA+S +
Sbjct: 103 GACCENVIGYMPIPVGVAGPLCLDEKEFQVPMATTEGCLVASTNRGCRAIGLGGGASSRV 162

Query: 287 LKDGMTRAPVVRFGSAKRAAELKLFLENPVNFDPLSMVFNKSSRFARLQAIKCAIAGKNL 346
           L DGMTR PVVR   A  +AE+K +LE    F  +   F+ +SRFARLQ +  +IAG+NL
Sbjct: 163 LADGMTRGPVVRLPRACDSAEVKAWLETSEGFAVIKEAFDSTSRFARLQKLHTSIAGRNL 222

Query: 347 YLRFTCSTGDAMGMNMVSKGVQNVLDFLQAEFPDMDVIGISGNFCSDKKPAAVNWIEGRG 406
           Y+RF   +GDAMGMNM+SKG +  L  L   FP+M ++ +SGN+C+DKKPAA+NWIEGRG
Sbjct: 223 YIRFQSRSGDAMGMNMISKGTEKALSKLHEYFPEMQILAVSGNYCTDKKPAAINWIEGRG 282

Query: 407 KSVVCEAIIKGDVVRKVLKTNVDALVELNMLKNLTGSAMAGALGGFNAHASNIVTAVYIA 466
           KSVVCEA+I   VVR+VLKT  +A++E+N+ KNL GSAMAG++GG+NAHA+NIVTA+YIA
Sbjct: 283 KSVVCEAVIPAKVVREVLKTTTEAMIEVNINKNLVGSAMAGSIGGYNAHAANIVTAIYIA 342

Query: 467 TGQDPAQNVESSHCITMMEAIN-DGKDLHVSVTMPSIEVGTVGGGTQLASQSACLNLLGV 525
            GQD AQNV SS+CIT+MEA     +DL++S TMPSIE+GTVGGGT L  Q ACL +LGV
Sbjct: 343 CGQDAAQNVGSSNCITLMEASGPTNEDLYISCTMPSIEIGTVGGGTNLLPQQACLQMLGV 402

Query: 526 KGANKESPGANSRLLATIVAGSVLAGELSLMSALAAGQLVKSHMKYNRS 574
           +GA K++PG N+R LA IV G+V+AGELSLM+ALAAG LVKSHM +NRS
Sbjct: 403 QGACKDNPGENARQLARIVCGTVMAGELSLMAALAAGHLVKSHMIHNRS 451


>pdb|2Q1L|A Chain A, Design And Synthesis Of Pyrrole-Based, Hepatoselective
           Hmg-Coa Reductase Inhibitors
 pdb|2Q1L|B Chain B, Design And Synthesis Of Pyrrole-Based, Hepatoselective
           Hmg-Coa Reductase Inhibitors
 pdb|2Q1L|C Chain C, Design And Synthesis Of Pyrrole-Based, Hepatoselective
           Hmg-Coa Reductase Inhibitors
 pdb|2Q1L|D Chain D, Design And Synthesis Of Pyrrole-Based, Hepatoselective
           Hmg-Coa Reductase Inhibitors
 pdb|2Q6B|A Chain A, Design And Synthesis Of Novel, Conformationally Restricted
           Hmg-Coa Reductase Inhibitors
 pdb|2Q6B|B Chain B, Design And Synthesis Of Novel, Conformationally Restricted
           Hmg-Coa Reductase Inhibitors
 pdb|2Q6B|C Chain C, Design And Synthesis Of Novel, Conformationally Restricted
           Hmg-Coa Reductase Inhibitors
 pdb|2Q6B|D Chain D, Design And Synthesis Of Novel, Conformationally Restricted
           Hmg-Coa Reductase Inhibitors
 pdb|2Q6C|A Chain A, Design And Synthesis Of Novel, Conformationally Restricted
           Hmg-Coa Reductase Inhibitors
 pdb|2Q6C|B Chain B, Design And Synthesis Of Novel, Conformationally Restricted
           Hmg-Coa Reductase Inhibitors
 pdb|2Q6C|C Chain C, Design And Synthesis Of Novel, Conformationally Restricted
           Hmg-Coa Reductase Inhibitors
 pdb|2Q6C|D Chain D, Design And Synthesis Of Novel, Conformationally Restricted
           Hmg-Coa Reductase Inhibitors
 pdb|3BGL|A Chain A, Hepatoselectivity Of Statins: Design And Synthesis Of 4-
           Sulfamoyl Pyrroles As Hmg-Coa Reductase Inhibitors
 pdb|3BGL|B Chain B, Hepatoselectivity Of Statins: Design And Synthesis Of 4-
           Sulfamoyl Pyrroles As Hmg-Coa Reductase Inhibitors
 pdb|3BGL|C Chain C, Hepatoselectivity Of Statins: Design And Synthesis Of 4-
           Sulfamoyl Pyrroles As Hmg-Coa Reductase Inhibitors
 pdb|3BGL|D Chain D, Hepatoselectivity Of Statins: Design And Synthesis Of 4-
           Sulfamoyl Pyrroles As Hmg-Coa Reductase Inhibitors
 pdb|2R4F|A Chain A, Substituted Pyrazoles As Hepatselective Hmg-Coa Reductase
           Inhibitors
 pdb|2R4F|B Chain B, Substituted Pyrazoles As Hepatselective Hmg-Coa Reductase
           Inhibitors
 pdb|2R4F|C Chain C, Substituted Pyrazoles As Hepatselective Hmg-Coa Reductase
           Inhibitors
 pdb|2R4F|D Chain D, Substituted Pyrazoles As Hepatselective Hmg-Coa Reductase
           Inhibitors
 pdb|3CCT|A Chain A, Thermodynamic And Structure Guided Design Of Statin
           Hmg-Coa Reductase Inhibitors
 pdb|3CCT|B Chain B, Thermodynamic And Structure Guided Design Of Statin
           Hmg-Coa Reductase Inhibitors
 pdb|3CCT|C Chain C, Thermodynamic And Structure Guided Design Of Statin
           Hmg-Coa Reductase Inhibitors
 pdb|3CCT|D Chain D, Thermodynamic And Structure Guided Design Of Statin
           Hmg-Coa Reductase Inhibitors
 pdb|3CCW|A Chain A, Thermodynamic And Structure Guided Design Of Statin
           Hmg-Coa Reductase Inhibitors
 pdb|3CCW|B Chain B, Thermodynamic And Structure Guided Design Of Statin
           Hmg-Coa Reductase Inhibitors
 pdb|3CCW|C Chain C, Thermodynamic And Structure Guided Design Of Statin
           Hmg-Coa Reductase Inhibitors
 pdb|3CCW|D Chain D, Thermodynamic And Structure Guided Design Of Statin
           Hmg-Coa Reductase Inhibitors
 pdb|3CCZ|A Chain A, Thermodynamic And Structure Guided Design Of Statin
           Hmg-Coa Reductase Inhibitors
 pdb|3CCZ|B Chain B, Thermodynamic And Structure Guided Design Of Statin
           Hmg-Coa Reductase Inhibitors
 pdb|3CCZ|C Chain C, Thermodynamic And Structure Guided Design Of Statin
           Hmg-Coa Reductase Inhibitors
 pdb|3CCZ|D Chain D, Thermodynamic And Structure Guided Design Of Statin
           Hmg-Coa Reductase Inhibitors
 pdb|3CD0|A Chain A, Thermodynamic And Structure Guided Design Of Statin
           Hmg-Coa Reductase Inhibitors
 pdb|3CD0|B Chain B, Thermodynamic And Structure Guided Design Of Statin
           Hmg-Coa Reductase Inhibitors
 pdb|3CD0|C Chain C, Thermodynamic And Structure Guided Design Of Statin
           Hmg-Coa Reductase Inhibitors
 pdb|3CD0|D Chain D, Thermodynamic And Structure Guided Design Of Statin
           Hmg-Coa Reductase Inhibitors
 pdb|3CD5|A Chain A, Thermodynamic And Structure Guided Design Of Statin
           Hmg-Coa Reductase Inhibitors
 pdb|3CD5|B Chain B, Thermodynamic And Structure Guided Design Of Statin
           Hmg-Coa Reductase Inhibitors
 pdb|3CD5|C Chain C, Thermodynamic And Structure Guided Design Of Statin
           Hmg-Coa Reductase Inhibitors
 pdb|3CD5|D Chain D, Thermodynamic And Structure Guided Design Of Statin
           Hmg-Coa Reductase Inhibitors
 pdb|3CD7|A Chain A, Thermodynamic And Structure Guided Design Of Statin
           Hmg-Coa Reductase Inhibitors
 pdb|3CD7|B Chain B, Thermodynamic And Structure Guided Design Of Statin
           Hmg-Coa Reductase Inhibitors
 pdb|3CD7|C Chain C, Thermodynamic And Structure Guided Design Of Statin
           Hmg-Coa Reductase Inhibitors
 pdb|3CD7|D Chain D, Thermodynamic And Structure Guided Design Of Statin
           Hmg-Coa Reductase Inhibitors
 pdb|3CDA|A Chain A, Thermodynamic And Structure Guided Design Of Statin
           Hmg-Coa Reductase Inhibitors
 pdb|3CDA|B Chain B, Thermodynamic And Structure Guided Design Of Statin
           Hmg-Coa Reductase Inhibitors
 pdb|3CDA|C Chain C, Thermodynamic And Structure Guided Design Of Statin
           Hmg-Coa Reductase Inhibitors
 pdb|3CDA|D Chain D, Thermodynamic And Structure Guided Design Of Statin
           Hmg-Coa Reductase Inhibitors
 pdb|3CDB|A Chain A, Thermodynamic And Structure Guided Design Of Statin
           Hmg-Coa Reductase Inhibitors
 pdb|3CDB|B Chain B, Thermodynamic And Structure Guided Design Of Statin
           Hmg-Coa Reductase Inhibitors
 pdb|3CDB|C Chain C, Thermodynamic And Structure Guided Design Of Statin
           Hmg-Coa Reductase Inhibitors
 pdb|3CDB|D Chain D, Thermodynamic And Structure Guided Design Of Statin
           Hmg-Coa Reductase Inhibitors
          Length = 441

 Score =  491 bits (1263), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 240/409 (58%), Positives = 307/409 (75%), Gaps = 3/409 (0%)

Query: 169 DEEMIKSVVDGTTPSYSLESKLGDCRRAAAIRREALQR--STGKSLHGLPLEGFDYGSIL 226
           D E+I+ V     P+Y LE+ +    R  +IRR+ L +  S   SL  LP   ++Y  ++
Sbjct: 30  DAEIIQLVNAKHIPAYKLETLIETHERGVSIRRQLLSKKLSEPSSLQYLPYRDYNYSLVM 89

Query: 227 GQCCEMPVGYVQIPVGIAGPLLLDGREYSVPMATTEGCLVASANRGCKAIHLSGGATSVL 286
           G CCE  +GY+ IPVG+AGPL LD +E+ VPMATTEGCLVAS NRGC+AI L GGA+S +
Sbjct: 90  GACCENVIGYMPIPVGVAGPLCLDEKEFQVPMATTEGCLVASTNRGCRAIGLGGGASSRV 149

Query: 287 LKDGMTRAPVVRFGSAKRAAELKLFLENPVNFDPLSMVFNKSSRFARLQAIKCAIAGKNL 346
           L DGMTR PVVR   A  +AE+K +LE    F  +   F+ +SRFARLQ +  +IAG+NL
Sbjct: 150 LADGMTRGPVVRLPRACDSAEVKAWLETSEGFAVIKEAFDSTSRFARLQKLHTSIAGRNL 209

Query: 347 YLRFTCSTGDAMGMNMVSKGVQNVLDFLQAEFPDMDVIGISGNFCSDKKPAAVNWIEGRG 406
           Y+RF   +GDAMGMNM+SKG +  L  L   FP+M ++ +SGN+C+DKKPAA+NWIEGRG
Sbjct: 210 YIRFQSRSGDAMGMNMISKGTEKALSKLHEYFPEMQILAVSGNYCTDKKPAAINWIEGRG 269

Query: 407 KSVVCEAIIKGDVVRKVLKTNVDALVELNMLKNLTGSAMAGALGGFNAHASNIVTAVYIA 466
           KSVVCEA+I   VVR+VLKT  +A++E+N+ KNL GSAMAG++GG+NAHA+NIVTA+YIA
Sbjct: 270 KSVVCEAVIPAKVVREVLKTTTEAMIEVNINKNLVGSAMAGSIGGYNAHAANIVTAIYIA 329

Query: 467 TGQDPAQNVESSHCITMMEAIN-DGKDLHVSVTMPSIEVGTVGGGTQLASQSACLNLLGV 525
            GQD AQNV SS+CIT+MEA     +DL++S TMPSIE+GTVGGGT L  Q ACL +LGV
Sbjct: 330 CGQDAAQNVGSSNCITLMEASGPTNEDLYISCTMPSIEIGTVGGGTNLLPQQACLQMLGV 389

Query: 526 KGANKESPGANSRLLATIVAGSVLAGELSLMSALAAGQLVKSHMKYNRS 574
           +GA K++PG N+R LA IV G+V+AGELSLM+ALAAG LVKSHM +NRS
Sbjct: 390 QGACKDNPGENARQLARIVCGTVMAGELSLMAALAAGHLVKSHMIHNRS 438


>pdb|3QAE|A Chain A, 3-Hydroxy-3-Methylglutaryl-Coenzyme A Reductase Of
           Streptococcus Pneumoniae
 pdb|3QAU|A Chain A, 3-Hydroxy-3-Methylglutaryl-Coenzyme A Reductase From
           Streptococcus Pneumoniae
          Length = 458

 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 79/176 (44%), Gaps = 8/176 (4%)

Query: 224 SILGQCCEMPVGYVQIPVGIAGPLLLDGREYSVPMATTEGCLVASANRGCKAIHLSGGAT 283
           ++  Q  E  VG   +P  +   +L++G+EY+VP  T E  +VA+A+   K I  +GG T
Sbjct: 77  TVADQLSENVVGTFSLPYSLVPEVLVNGQEYTVPYVTEEPSVVAAASYASKIIKRAGGFT 136

Query: 284 SVLLKDGMTRAPVV------RFGSAKRAAELKLFLENPVNFDPLSMVFNKSSRFARLQAI 337
           + + +  M     +      +    K A++    LE      P  +     +R   ++ I
Sbjct: 137 TQVHQRQMIGQVALYQVANPKLAQEKIASKKAELLELANQAYPSIVKRGGGARDLHVEQI 196

Query: 338 KCAIAGKNLYLRFTCSTGDAMGMNMVSKGVQNVLDFLQAEFPDMDVIGISGNFCSD 393
           K       +Y+     T +AMG NM++  ++ +   L+       ++GI  N+ +D
Sbjct: 197 KGEPDFLVVYIH--VDTQEAMGANMLNTMLEALKPVLEELSQGQSLMGILSNYATD 250


>pdb|1QAX|A Chain A, Ternary Complex Of Pseudomonas Mevalonii Hmg-Coa Reductase
           With Hmg-Coa And Nad+
 pdb|1QAX|B Chain B, Ternary Complex Of Pseudomonas Mevalonii Hmg-Coa Reductase
           With Hmg-Coa And Nad+
 pdb|1QAY|A Chain A, Ternary Complex Of Pseudomonas Mevalonii Hmg-Coa Reductase
           With Mevalonate And Nad+
 pdb|1QAY|B Chain B, Ternary Complex Of Pseudomonas Mevalonii Hmg-Coa Reductase
           With Mevalonate And Nad+
 pdb|1R31|A Chain A, Hmg-Coa Reductase From Pseudomonas Mevalonii Complexed
           With Hmg-Coa
 pdb|1R31|B Chain B, Hmg-Coa Reductase From Pseudomonas Mevalonii Complexed
           With Hmg-Coa
 pdb|1R7I|A Chain A, Hmg-Coa Reductase From P. Mevalonii, Native Structure At
           2.2 Angstroms Resolution.
 pdb|1R7I|B Chain B, Hmg-Coa Reductase From P. Mevalonii, Native Structure At
           2.2 Angstroms Resolution.
 pdb|1T02|A Chain A, Crystal Structure Of A Statin Bound To Class Ii Hmg-Coa
           Reductase
 pdb|1T02|B Chain B, Crystal Structure Of A Statin Bound To Class Ii Hmg-Coa
           Reductase
          Length = 428

 Score = 33.9 bits (76), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 89/374 (23%), Positives = 135/374 (36%), Gaps = 76/374 (20%)

Query: 230 CEMPVGYVQIPVGIAGPLLLDGREYSVPMATTEGCLVASANRGCKAIHLSGGATS----- 284
            E  +G  ++P  +A    ++GR+  VP+   E  +VA+A+   K    +GG T+     
Sbjct: 51  IENVIGTFELPYAVASNFQINGRDVLVPLVVEEPSIVAAASYMAKLARANGGFTTSSSAP 110

Query: 285 --------VLLKDGMTRAPVVRFGSAKRAAELKLFLENPVNFDPLSMVFNKSSRFARLQA 336
                   V ++D +      R    +R  E+   +E     D L        R   +  
Sbjct: 111 LMHAQVQIVGIQDPLN----ARLSLLRRKDEI---IELANRKDQLLNSLGGGCRDIEVHT 163

Query: 337 IKCAIAGKNLYLRFTCSTGDAMGMNMVSKGVQNVLDFLQAEFPDMDVIGISGNFCSDK-- 394
                 G  L         DAMG N V+   + V   ++A       + I  N    +  
Sbjct: 164 FADTPRGPMLVAHLIVDVRDAMGANTVNTMAEAVAPLMEAITGGQVRLRILSNLADLRLA 223

Query: 395 ------KPAAVNWIEGRGKSVVCEAIIKGDVVRKVLKTNVDALVELNMLKNLTGSAMAGA 448
                  P  +   E  G     EA+I+G +       +  A   ++  +  T       
Sbjct: 224 RAQVRITPQQLETAEFSG-----EAVIEGIL-------DAYAFAAVDPYRAAT------- 264

Query: 449 LGGFNAHASNIVTAVYIATGQD--------PAQNVESSH--CITMMEAINDGKDLHVSVT 498
               N    N +  + +ATG D         A    S H   +T  E  N+G  L  ++ 
Sbjct: 265 ---HNKGIMNGIDPLIVATGNDWRAVEAGAHAYACRSGHYGSLTTWEKDNNGH-LVGTLE 320

Query: 499 MPSIEVGTVGGGTQ---LASQSACLNLLGVKGANKESPGANSRLLATIVAGSVLAGELSL 555
           MP + VG VGG T+   LA  S  L +LGVK A           LA I     LA  L  
Sbjct: 321 MP-MPVGLVGGATKTHPLAQLS--LRILGVKTAQA---------LAEIAVAVGLAQNLGA 368

Query: 556 MSALAAGQLVKSHM 569
           M ALA   + + HM
Sbjct: 369 MRALATEGIQRGHM 382


>pdb|1YZH|A Chain A, Crystal Structure Of The Conserved Hypothetical Protein,
           Methyltransferase From Streptococcus Pneumoniae Tigr4
 pdb|1YZH|B Chain B, Crystal Structure Of The Conserved Hypothetical Protein,
           Methyltransferase From Streptococcus Pneumoniae Tigr4
          Length = 214

 Score = 29.6 bits (65), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 16/52 (30%), Positives = 26/52 (50%)

Query: 52  SRWREKIRNSTPLHVVTLSEMVAIVAFVASCIYLLGFFGIDFVQSILRPSAD 103
           ++WR+   N  P+HV   S   A V+  A     + + GID  +S+L  + D
Sbjct: 32  AKWRDLFGNDNPIHVEVGSGKGAFVSGXAKQNPDINYIGIDIQKSVLSYALD 83


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.133    0.384 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,665,757
Number of Sequences: 62578
Number of extensions: 610700
Number of successful extensions: 1446
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1435
Number of HSP's gapped (non-prelim): 8
length of query: 583
length of database: 14,973,337
effective HSP length: 104
effective length of query: 479
effective length of database: 8,465,225
effective search space: 4054842775
effective search space used: 4054842775
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)