Query 007956
Match_columns 583
No_of_seqs 286 out of 712
Neff 4.0
Searched_HMMs 46136
Date Thu Mar 28 17:34:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007956.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007956hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2480 3-hydroxy-3-methylglut 100.0 3E-171 6E-176 1349.3 40.2 538 23-581 44-588 (602)
2 cd00643 HMG-CoA_reductase_clas 100.0 1E-135 3E-140 1069.2 38.3 399 170-573 1-403 (403)
3 TIGR00920 2A060605 3-hydroxy-3 100.0 3E-135 7E-140 1130.0 40.0 415 166-580 458-875 (886)
4 TIGR00533 HMG_CoA_R_NADP 3-hyd 100.0 1E-129 3E-134 1023.7 38.1 395 167-573 1-402 (402)
5 PF00368 HMG-CoA_red: Hydroxym 100.0 4E-121 9E-126 955.1 19.2 371 194-573 1-373 (373)
6 COG1257 HMG1 Hydroxymethylglut 100.0 8E-112 2E-116 890.5 28.4 402 172-576 2-414 (436)
7 TIGR00532 HMG_CoA_R_NAD hydrox 100.0 5E-107 1E-111 852.0 29.4 363 177-573 3-393 (393)
8 cd00644 HMG-CoA_reductase_clas 100.0 9E-107 2E-111 855.4 27.7 352 193-580 4-384 (417)
9 cd00365 HMG-CoA_reductase Hydr 100.0 4E-105 9E-110 834.3 33.4 359 184-573 1-376 (376)
10 COG1257 HMG1 Hydroxymethylglut 98.8 7.4E-10 1.6E-14 119.1 -0.1 114 451-577 272-399 (436)
11 PF14150 YesK: YesK-like prote 73.1 3.4 7.4E-05 36.3 2.9 56 33-92 2-58 (81)
12 PF14715 FixP_N: N-terminal do 54.1 16 0.00035 29.5 3.3 25 28-52 18-42 (51)
13 PF14012 DUF4229: Protein of u 53.1 22 0.00047 30.1 4.1 31 29-59 29-59 (69)
14 PF11947 DUF3464: Protein of u 50.4 47 0.001 32.4 6.4 67 23-108 46-126 (153)
15 PRK09509 fieF ferrous iron eff 46.8 42 0.00092 34.8 5.9 66 318-383 215-280 (299)
16 COG1862 YajC Preprotein transl 42.5 20 0.00044 32.5 2.4 27 31-57 6-32 (97)
17 PRK13454 F0F1 ATP synthase sub 40.3 27 0.00058 34.2 3.1 22 33-54 30-51 (181)
18 TIGR01297 CDF cation diffusion 40.3 1.1E+02 0.0025 30.5 7.7 66 318-383 194-260 (268)
19 COG5522 Predicted integral mem 37.0 64 0.0014 33.4 5.2 73 24-100 29-114 (236)
20 COG0053 MMT1 Predicted Co/Zn/C 36.0 1E+02 0.0022 32.7 6.8 78 317-394 216-293 (304)
21 TIGR00782 ccoP cytochrome c ox 32.3 42 0.00092 34.9 3.3 25 28-52 24-48 (285)
22 PF08507 COPI_assoc: COPI asso 32.0 1.1E+02 0.0024 28.4 5.7 46 68-113 86-132 (136)
23 TIGR02206 intg_mem_TP0381 cons 31.7 92 0.002 31.6 5.4 45 57-103 63-113 (222)
24 PRK13108 prolipoprotein diacyl 30.6 92 0.002 35.3 5.7 43 43-85 228-272 (460)
25 PF13858 DUF4199: Protein of u 30.6 1.6E+02 0.0035 27.4 6.6 49 36-88 34-85 (163)
26 PF01578 Cytochrom_C_asm: Cyto 29.0 1.1E+02 0.0024 29.9 5.4 50 36-96 162-211 (214)
27 PF01545 Cation_efflux: Cation 24.5 3.8E+02 0.0083 26.9 8.4 65 319-383 208-273 (284)
28 PF10646 Germane: Sporulation 23.8 3.7E+02 0.0081 23.4 7.3 77 308-387 30-107 (117)
29 PF07074 TRAP-gamma: Transloco 23.7 50 0.0011 32.9 1.9 32 24-55 117-148 (170)
30 COG5548 Small integral membran 22.7 1.2E+02 0.0025 28.0 3.8 48 33-96 30-77 (105)
31 KOG2675 Adenylate cyclase-asso 22.7 3.6E+02 0.0079 30.8 8.3 123 40-190 160-285 (480)
32 PF06129 Chordopox_G3: Chordop 21.5 75 0.0016 29.6 2.4 21 33-53 2-22 (109)
33 PRK05886 yajC preprotein trans 21.3 89 0.0019 28.9 2.9 21 37-57 7-27 (109)
34 PRK14066 exodeoxyribonuclease 21.2 1.3E+02 0.0028 26.0 3.7 36 168-206 12-47 (75)
35 TIGR03063 srtB_target sortase 20.8 84 0.0018 23.0 2.1 25 23-53 3-27 (29)
36 TIGR00739 yajC preprotein tran 20.3 79 0.0017 27.7 2.2 22 34-55 3-24 (84)
37 PF07045 DUF1330: Protein of u 20.1 36 0.00078 27.7 0.1 42 271-315 18-59 (65)
No 1
>KOG2480 consensus 3-hydroxy-3-methylglutaryl-CoA (HMG-CoA) reductase [Lipid transport and metabolism]
Probab=100.00 E-value=2.6e-171 Score=1349.29 Aligned_cols=538 Identities=61% Similarity=0.934 Sum_probs=494.4
Q ss_pred hcccCCCchHHHHhHHHHHHHHHHHHHHHHHHH--hhhhcCCCccccchHHHHHHHHH-HHHHHHHHhhcCcccccccc-
Q 007956 23 ETHAQLPLPLYIINALFFTLFFTVVYYLLSRWR--EKIRNSTPLHVVTLSEMVAIVAF-VASCIYLLGFFGIDFVQSIL- 98 (583)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~- 98 (583)
++++.+|||+|+++..|+.|||+++||++++|+ +|+|.|+|||++++++..+.... +++++|+++|++|+++++++
T Consensus 44 ~~~~~~~l~~~~~i~~~~~l~~~~~~~~~~~~~~~~k~~~s~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~s 123 (602)
T KOG2480|consen 44 KASKYLPLSLYLTIESPVLLLLSVVYIGFENWRLADKIRISTPLHVVDLSELAAHIGESIAENIDLLNFAKIDLIKSVIS 123 (602)
T ss_pred hhhhhcccchHHhhhhHHHHHHHHHHHHHhhhhhhhhhhccCceeEEEccchhcceehhhhhhhhhhccccccchhhccc
Confidence 789999999999999999999999999999999 99999999999999999998888 99999999999999999988
Q ss_pred CCCCCccccccccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCcCCCCCHHHHHHHhhc
Q 007956 99 RPSADVWASEDLEEEDSHVIIKDDSRNLPCGQALDCSHVMTLPQPQPQPQPLPSLIIDHDPNTLTFTTEEDEEMIKSVVD 178 (583)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~~v~~ 178 (583)
....+.|..+ ..+...+.+... -|.++. |..+-..++-+ .|......+.+|+||+++|..
T Consensus 124 ~~~~~~~~~~-------~~~~~~~~~~~~-----~~~~~~----pi~~l~~~~~~----~~~g~~~~~~~d~Eiv~lv~~ 183 (602)
T KOG2480|consen 124 DDDVESWVTD-------RTILCVSGRLVT-----FPSIPK----PIRPLLEILNL----FPSGQEVKSLSDEEIVQLVIA 183 (602)
T ss_pred cccccccccc-------cccccCCCcccc-----cCCCCC----Cccchhhhccc----CccccccccCChHHHHHHhhc
Confidence 5555567543 112222222211 011110 01111111001 112222346799999999999
Q ss_pred CCCCCCCcchhcccHHHHHHHHHHHHHHHhCCCCC---CCCCCCCCcccccccccccceEEeeeceeeecCeEEcCeEEe
Q 007956 179 GTTPSYSLESKLGDCRRAAAIRREALQRSTGKSLH---GLPLEGFDYGSILGQCCEMPVGYVQIPVGIAGPLLLDGREYS 255 (583)
Q Consensus 179 g~~~~~~lE~~l~d~~ra~~iRR~~l~~~tg~sl~---~L~~~~~D~~~i~g~~iEN~IG~v~IPvGVAGPL~InG~ey~ 255 (583)
|++|+|+||++|+|++||+.|||++|++.++.+.+ +||+++|||+++.|+||||+|||+||||||||||+|||++||
T Consensus 184 G~~p~y~lEs~l~d~~Rav~iRR~~l~~~~~~~~~~~~~lP~~~yDY~~Vl~aCCENvIGY~piPVGVaGPLlldG~~y~ 263 (602)
T KOG2480|consen 184 GKIPLYALESKLGDAERAVSIRRTALSRNAREPTGTSDKLPYEGYDYSRVLGACCENVIGYMPIPVGVAGPLLLDGTEYY 263 (602)
T ss_pred CcccceeccccccchhhhHHHHHHHHHHhhcCcccccccCCccCcCHHHHHHHhhhccccceecccccccceEECCeEEE
Confidence 99999999999999999999999999999998877 999999999999999999999999999999999999999999
Q ss_pred eeccccchhHHHHhhhHHHHHhhCCCeEEEEcCCceEEceEEEeCCHHHHHHHHHHhcCCCCCcchhhhhhhcCCcccee
Q 007956 256 VPMATTEGCLVASANRGCKAIHLSGGATSVLLKDGMTRAPVVRFGSAKRAAELKLFLENPVNFDPLSMVFNKSSRFARLQ 335 (583)
Q Consensus 256 VPMATtEgsLVAS~nRGaKai~~sGG~~t~v~~d~MtRapV~~f~~~~~A~~~~~wl~~p~n~~~L~~van~tsR~g~L~ 335 (583)
|||||||||||||+|||||+|+.+||+++++.+|||||+||++|+++.+|.++|.||++|+||+.++++||++|||+|||
T Consensus 264 VPMATTEGaLVAStnRGcKaI~a~GGa~sv~~~dGMTRgPvVRFps~~rA~~~k~WLe~~E~~~~lk~~FnstSRFaRLq 343 (602)
T KOG2480|consen 264 VPMATTEGALVASTNRGCKAINAGGGATSVLEKDGMTRGPVVRFPSARRAAEAKIWLESPENQEVLKKAFNSTSRFARLQ 343 (602)
T ss_pred eeeccccchhhHhhccchhheecCCCeeEEEeecCccccceeecchHHHHHHHHHHhcChhhHHHHHHHhcccchhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeeCCeEEEEEEeeccccccchhHHHHHHHHHHHHHhhCCCCcEEEeecCCccCcccceeccccCCccEEEeeeec
Q 007956 336 AIKCAIAGKNLYLRFTCSTGDAMGMNMVSKGVQNVLDFLQAEFPDMDVIGISGNFCSDKKPAAVNWIEGRGKSVVCEAII 415 (583)
Q Consensus 336 ~I~~~i~G~~l~lrf~~~TgDAMG~NMVn~~~e~v~~~l~~~~~~~~~i~IsgN~ctDKK~sA~n~I~gRGksVvaea~i 415 (583)
+|++.++|+++|+||...||||||||||+|++|.++.+|.++||+|++++||||||+||||+|+|||+||||+|+||++|
T Consensus 344 ~i~~~iaG~~lyiRF~~~TGDAMGMNMISKgve~~l~~l~~~fpdM~vi~iSGNyCtDKKpAAiNWieGRGKsVV~Ea~I 423 (602)
T KOG2480|consen 344 SIHTTIAGRNLYIRFCTSTGDAMGMNMISKGVENALRFLSEEFPDMQVISISGNYCTDKKPAAINWIEGRGKSVVAEATI 423 (602)
T ss_pred eeeEEeecceeEEEEEeccccchhhhhHHHHHHHHHHHHHHhCCCceEEEeccCcccCCchHhhhhhccCCceEEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHccCHHHHHhhhhhhhhhHhhhhhccccCCCCcchhHHHHHHHhCCCcccccccccceeeeEEecCCCcEEE
Q 007956 416 KGDVVRKVLKTNVDALVELNMLKNLTGSAMAGALGGFNAHASNIVTAVYIATGQDPAQNVESSHCITMMEAINDGKDLHV 495 (583)
Q Consensus 416 ~~eVv~kiLkts~~al~eln~~knltGsa~aGs~gG~NkhiaNgIaAvfIATGQD~A~~VESS~~iT~~e~~~~g~dL~~ 495 (583)
|.++|+++|||++++|+|+|..||++|||||||+||||+|++|+|+|||||||||+||+||||||+|.||... ++|||+
T Consensus 424 p~~vvr~VLkt~v~aLveln~~KnliGSAmAGSvGGfNAHAANiVtAvFlAtGQDpAQnVeSSnCiT~Me~~~-d~DL~i 502 (602)
T KOG2480|consen 424 PGEVVRKVLKTTVEALVELNILKNLIGSAMAGSVGGFNAHAANIVTAVFLATGQDPAQNVESSNCITLMEAST-DGDLYI 502 (602)
T ss_pred cHHHHHHHHccCHHHHHHHHhhhhhhhhhhhccccCcchhHHHHHHHHHHHhCCChHHhcccchhhhhheecc-CCCeEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999864 469999
Q ss_pred EEEcCCceeEeecCcccchhHHHHHHHcCCCCCCCCCCCccHHHHHHHHHHHHHhhHHHHHHHhccchHHHHHHhhccCC
Q 007956 496 SVTMPSIEVGTVGGGTQLASQSACLNLLGVKGANKESPGANSRLLATIVAGSVLAGELSLMSALAAGQLVKSHMKYNRSS 575 (583)
Q Consensus 496 SvtLPsL~VGTVGGGT~L~~q~~~L~lLGv~Ga~~~~pG~nAr~LAeIIAA~vLAgeLSll~ALaa~gi~kgHMkL~R~~ 575 (583)
|||||||+||||||||.|+||++||++|||+|++++.||.|||+||+||||+|||||||||+|||+|||+|+||+|||++
T Consensus 503 SvtMPsIEVGTVGGGT~L~pQ~AcL~lLGv~G~~~~~PG~NarqLAriVaaaVlAGELSLmaALAag~LVkSHM~~NRs~ 582 (602)
T KOG2480|consen 503 SVTMPSIEVGTVGGGTVLEPQGACLDLLGVRGAHKTSPGDNARQLARIVAAAVLAGELSLMAALAAGHLVKSHMKLNRSS 582 (602)
T ss_pred EEecccEEEEeecCccccCcHHHHHHHhcCCCCCCCCCCccHHHHHHHHHHHHHHhHHHHHHHHhcchHHHHHHhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccccc
Q 007956 576 KDVTKA 581 (583)
Q Consensus 576 ~~~~~~ 581 (583)
.++...
T Consensus 583 ~~~~~~ 588 (602)
T KOG2480|consen 583 IAIGSL 588 (602)
T ss_pred cCCCCC
Confidence 887643
No 2
>cd00643 HMG-CoA_reductase_classI Class I hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase (HMGR). Hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase (HMGR), class I enzyme, homotetramer. Catalyzes the synthesis of coenzyme A and mevalonate in isoprenoid synthesis. In mammals this is the rate limiting committed step in cholesterol biosynthesis. Class I enzymes are found predominantly in eukaryotes and contain N-terminal membrane regions. With the exception of Archaeoglobus fulgidus, most archeae are assigned to class I, based on sequence similarity of the active site, even though they lack membrane regions. Yeast and human HMGR are divergent in their N-terminal regions, but are conserved in their active site. In contrast, human and bacterial HMGR differ in their active site architecture.
Probab=100.00 E-value=1.2e-135 Score=1069.18 Aligned_cols=399 Identities=62% Similarity=0.963 Sum_probs=390.2
Q ss_pred HHHHHHhhcCCCCCCCcchhcccHHHHHHHHHHHHHHHhCCCCCCCCCCCCCcccccccccccceEEeeeceeeecCeEE
Q 007956 170 EEMIKSVVDGTTPSYSLESKLGDCRRAAAIRREALQRSTGKSLHGLPLEGFDYGSILGQCCEMPVGYVQIPVGIAGPLLL 249 (583)
Q Consensus 170 ~ei~~~v~~g~~~~~~lE~~l~d~~ra~~iRR~~l~~~tg~sl~~L~~~~~D~~~i~g~~iEN~IG~v~IPvGVAGPL~I 249 (583)
+||++++.+|++++|+||+.+.|.+|++++||+++++.+|.++++||.+++||+++.++||||+|||+|||+||||||+|
T Consensus 1 ~ei~~~~~~~~~~~~~le~~~~~~~~a~~~Rr~~~~~~~~~~l~~~~~~~~d~~~~~~~~iEN~IG~~~vPlGvAgpl~I 80 (403)
T cd00643 1 EEIIDLLSAGHIKLYKLEKSLEDAERAVRIRRLYLEKSTGKSLEHLPYTTYDYSEVLGRNIENVIGYVQVPVGVAGPLLI 80 (403)
T ss_pred ChHHHhhhcCCCCchhccccccChHHHHHHHHHHHHhccccccccCCCCCcCHHHHhccccccceeeEeeceEEecceEE
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c----CeEEeeeccccchhHHHHhhhHHHHHhhCCCeEEEEcCCceEEceEEEeCCHHHHHHHHHHhcCCCCCcchhhhh
Q 007956 250 D----GREYSVPMATTEGCLVASANRGCKAIHLSGGATSVLLKDGMTRAPVVRFGSAKRAAELKLFLENPVNFDPLSMVF 325 (583)
Q Consensus 250 n----G~ey~VPMATtEgsLVAS~nRGaKai~~sGG~~t~v~~d~MtRapV~~f~~~~~A~~~~~wl~~p~n~~~L~~va 325 (583)
| |++|+|||||||||||||+|||||+++.+||+++++++|+|||+|+|+|+++.+|.++++|+++ |+++|+++|
T Consensus 81 nG~~a~~~~~VPmATtEgslVAS~srGak~i~~~GG~~~~v~~~~Mtrap~~~~~~~~~a~~~~~wi~~--~~~~i~~~a 158 (403)
T cd00643 81 NGEYAGGEFYVPMATTEGALVASTNRGCKAINLSGGATTRVLGDGMTRAPVFRFPSAREAAEFKAWIEE--NFEAIKEVA 158 (403)
T ss_pred ecccCCcEEEEEeeechhHHHHHHHHHHHHHHhcCCceEEEcCCcceeccEEEECchhhHHHHHHHHHH--HHHHHHHHH
Confidence 9 7799999999999999999999999999999999999999999999999999999999999987 999999999
Q ss_pred hhcCCccceeeEEEEeeCCeEEEEEEeeccccccchhHHHHHHHHHHHHHhhCCCCcEEEeecCCccCcccceeccccCC
Q 007956 326 NKSSRFARLQAIKCAIAGKNLYLRFTCSTGDAMGMNMVSKGVQNVLDFLQAEFPDMDVIGISGNFCSDKKPAAVNWIEGR 405 (583)
Q Consensus 326 n~tsR~g~L~~I~~~i~G~~l~lrf~~~TgDAMG~NMVn~~~e~v~~~l~~~~~~~~~i~IsgN~ctDKK~sA~n~I~gR 405 (583)
|+|||||||++|++++.|++|||||.|+|||||||||||+++|++|+||+++||++++++||||||+||||+|+||++||
T Consensus 159 ~stsr~g~l~~i~~~~~g~~v~lrf~~~TgDAMG~NMv~~~~e~v~~~i~~~~~~~~~~~i~gN~~tdKK~sa~n~~~gR 238 (403)
T cd00643 159 ESTSRHARLQSIKPYIAGRSVYLRFEYTTGDAMGMNMVTKATEAACDWIEENFPDMEVISLSGNFCTDKKPSAINWIEGR 238 (403)
T ss_pred HhcCCCcccceEEEEecCCEEEEEEEEEcCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEeccccccccchhhccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEeeeechHHHHHHHHccCHHHHHhhhhhhhhhHhhhhhccccCCCCcchhHHHHHHHhCCCcccccccccceeeeE
Q 007956 406 GKSVVCEAIIKGDVVRKVLKTNVDALVELNMLKNLTGSAMAGALGGFNAHASNIVTAVYIATGQDPAQNVESSHCITMME 485 (583)
Q Consensus 406 GksVvaea~i~~eVv~kiLkts~~al~eln~~knltGsa~aGs~gG~NkhiaNgIaAvfIATGQD~A~~VESS~~iT~~e 485 (583)
||+|+||+.||+++++++++|+++++++++..|+++||+||| .+|||+|+||||+||||||||||||++|||+|+|+||
T Consensus 239 Gk~V~Ae~~I~~~v~~~il~~s~~a~~~~~~~K~~igs~mag-~~g~Nah~aNgi~Av~iATGQD~A~v~ess~~lT~~e 317 (403)
T cd00643 239 GKSVVAEATIPREVVKEVLKTTPEALVEVNIAKNLIGSAMAG-SGGFNAHAANIVAAIFIATGQDAAQVVESSNCITTME 317 (403)
T ss_pred ceEEEEEEEECHHHHHHHHcCCHHHHHHHHHhhhhHHHHhhc-cccccccHHHHHHHHHhhcCCcHHHHHHHhccceeEE
Confidence 999999999999999999999999999999999999999999 6669999999999999999999999999999999999
Q ss_pred EecCCCcEEEEEEcCCceeEeecCcccchhHHHHHHHcCCCCCCCCCCCccHHHHHHHHHHHHHhhHHHHHHHhccchHH
Q 007956 486 AINDGKDLHVSVTMPSIEVGTVGGGTQLASQSACLNLLGVKGANKESPGANSRLLATIVAGSVLAGELSLMSALAAGQLV 565 (583)
Q Consensus 486 ~~~~g~dL~~SvtLPsL~VGTVGGGT~L~~q~~~L~lLGv~Ga~~~~pG~nAr~LAeIIAA~vLAgeLSll~ALaa~gi~ 565 (583)
..+ +++||+|||||||+||||||||+||+|++||+||||+|++.+ ||+||++||+||||+|||||||+|+||+++|||
T Consensus 318 ~~~-~~~L~~svtlPsL~VGTVGGgT~lp~q~~~L~iLg~~g~~~~-pg~~A~~LA~IiAa~~LAgelSll~AL~~~~i~ 395 (403)
T cd00643 318 LTA-DGDLYISVTMPSLEVGTVGGGTGLPTQRECLELLGCYGAGDE-PGANARKLAEIVAATVLAGELSLLAALAAGHLV 395 (403)
T ss_pred EcC-CCeEEEEEEeCCceEEEecCccCCHHHHHHHHHhCCCCCCCC-cccCHHHHHHHHHHHHHHHHHHHHHHHhcChHH
Confidence 753 468999999999999999999999999999999999998765 999999999999999999999999999999999
Q ss_pred HHHHhhcc
Q 007956 566 KSHMKYNR 573 (583)
Q Consensus 566 kgHMkL~R 573 (583)
|+||+|+|
T Consensus 396 ~~Hm~L~R 403 (403)
T cd00643 396 RSHEKLGR 403 (403)
T ss_pred HHHHHhcC
Confidence 99999998
No 3
>TIGR00920 2A060605 3-hydroxy-3-methylglutaryl-coenzyme A reductase.
Probab=100.00 E-value=3.2e-135 Score=1130.02 Aligned_cols=415 Identities=61% Similarity=0.986 Sum_probs=404.7
Q ss_pred CCCHHHHHHHhhcCCCCCCCcchhcccHHHHHHHHHHHHHHHhC--CCCCCCCCCCCCcccccccccccceEEeeeceee
Q 007956 166 TEEDEEMIKSVVDGTTPSYSLESKLGDCRRAAAIRREALQRSTG--KSLHGLPLEGFDYGSILGQCCEMPVGYVQIPVGI 243 (583)
Q Consensus 166 ~~~~~ei~~~v~~g~~~~~~lE~~l~d~~ra~~iRR~~l~~~tg--~sl~~L~~~~~D~~~i~g~~iEN~IG~v~IPvGV 243 (583)
..+|+||++++.+|+++.|+||+.++|++||+++||++|++.+| .++++||+++|||+++.++||||+|||+|||+||
T Consensus 458 ~l~~~ei~~~~~~g~~~~~~le~~~~~~~~av~~Rr~~l~~~~~~~~~l~~l~~~~~d~~~v~~~~iEN~IG~~~vPvGV 537 (886)
T TIGR00920 458 ALSDAEVISLVNAKHIPAYKLETVLDNPERGVAIRRQILSKKLPMPDALDVLPYKNYDYSKVMGACCENVIGYMPIPVGV 537 (886)
T ss_pred cCCHHHHHHHHhcCCCCccchhhhccCHHHHHHHHHHHHHhhcCCchhhhcCCcCCcCHHHHHhcccceeeeeeecceee
Confidence 45999999999999999999999999999999999999999987 6799999999999999999999999999999999
Q ss_pred ecCeEEcCeEEeeeccccchhHHHHhhhHHHHHhhCCCeEEEEcCCceEEceEEEeCCHHHHHHHHHHhcCCCCCcchhh
Q 007956 244 AGPLLLDGREYSVPMATTEGCLVASANRGCKAIHLSGGATSVLLKDGMTRAPVVRFGSAKRAAELKLFLENPVNFDPLSM 323 (583)
Q Consensus 244 AGPL~InG~ey~VPMATtEgsLVAS~nRGaKai~~sGG~~t~v~~d~MtRapV~~f~~~~~A~~~~~wl~~p~n~~~L~~ 323 (583)
||||+|||++|+|||||||||||||+|||||+|+.+||+++++.+|+|||+|||+|+++.+|.++++|++++++++.+++
T Consensus 538 AGpL~InG~~y~VPMATtEgsLVAS~nRGaK~i~~~GG~~a~v~~d~MtRapvv~f~~~~~A~~~~~wi~~~e~~~~ik~ 617 (886)
T TIGR00920 538 AGPLLLDGKEYQVPMATTEGCLVASTNRGCRALMLGGGVRSRVLADGMTRGPVVRLPSACRAAEAKAWLEVPENFAVIKD 617 (886)
T ss_pred eccEEECCeEEEEeeeeccchHHHHHhHHHHHHHhcCCeEEEEccCceeeeeeEEeCcHHhHHHHHHHHhChHhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998889999999
Q ss_pred hhhhcCCccceeeEEEEeeCCeEEEEEEeeccccccchhHHHHHHHHHHHHHhhCCCCcEEEeecCCccCcccceecccc
Q 007956 324 VFNKSSRFARLQAIKCAIAGKNLYLRFTCSTGDAMGMNMVSKGVQNVLDFLQAEFPDMDVIGISGNFCSDKKPAAVNWIE 403 (583)
Q Consensus 324 van~tsR~g~L~~I~~~i~G~~l~lrf~~~TgDAMG~NMVn~~~e~v~~~l~~~~~~~~~i~IsgN~ctDKK~sA~n~I~ 403 (583)
++++++|||||++|++++.|+++|+||.|+||||||||||||++|++|++|+++||++++++||||||+||||+|+|||+
T Consensus 618 ~~~StsR~g~L~~I~~~i~g~~v~lrf~~~TGDAMG~NMVn~atEa~~~~i~~~~~~~~~~sIsgN~ctDKK~sAiN~i~ 697 (886)
T TIGR00920 618 AFDSTSRFARLKKIHIAMAGRNLYIRFQAKTGDAMGMNMISKGTEQALAELQEHFPDMQILSLSGNYCTDKKPAAINWIE 697 (886)
T ss_pred hhhccCcccceeeEEEEeeCCEEEEEEEEEcCchhcchHHHHHHHHHHHHHHHhCCCCeEEEEecccccchhhhhhcccc
Confidence 99999999999999999999999999999999999999999999999999998999999999999999999999999999
Q ss_pred CCccEEEeeeechHHHHHHHHccCHHHHHhhhhhhhhhHhhhhhccccCCCCcchhHHHHHHHhCCCcccccccccceee
Q 007956 404 GRGKSVVCEAIIKGDVVRKVLKTNVDALVELNMLKNLTGSAMAGALGGFNAHASNIVTAVYIATGQDPAQNVESSHCITM 483 (583)
Q Consensus 404 gRGksVvaea~i~~eVv~kiLkts~~al~eln~~knltGsa~aGs~gG~NkhiaNgIaAvfIATGQD~A~~VESS~~iT~ 483 (583)
||||+|+||++||++++++++++++++++|++..||++||++||++||||+|+||||+||||||||||||++|||+|+|.
T Consensus 698 gRGk~Vvae~~Ip~evv~~ilkts~~alvd~~~~KnliGsa~aGs~gg~Nah~aNgIaAifIATGQD~Ahv~eSs~~~t~ 777 (886)
T TIGR00920 698 GRGKSVVCEATIPAKIVRSVLKTSAEALVDVNINKNLIGSAMAGSIGGFNAHAANIVTAIYIATGQDAAQNVGSSNCMTL 777 (886)
T ss_pred cCCcEEEEEEEECHHHHHHHHcCCHHHHHHHHHhhhhHhhhhccccccccCcHHHHHHHHHhhcCCcHHHHHHHhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred eEEec-CCCcEEEEEEcCCceeEeecCcccchhHHHHHHHcCCCCCCCCCCCccHHHHHHHHHHHHHhhHHHHHHHhccc
Q 007956 484 MEAIN-DGKDLHVSVTMPSIEVGTVGGGTQLASQSACLNLLGVKGANKESPGANSRLLATIVAGSVLAGELSLMSALAAG 562 (583)
Q Consensus 484 ~e~~~-~g~dL~~SvtLPsL~VGTVGGGT~L~~q~~~L~lLGv~Ga~~~~pG~nAr~LAeIIAA~vLAgeLSll~ALaa~ 562 (583)
||... ++++||+|+|||||+||||||||+||+|++||+||||+|++.++||.||++||+||||+|||||||+|+||+++
T Consensus 778 me~~~~~~~~L~~SvtlPsL~VGTVGGGT~L~pq~~~L~iLGv~G~~~~~pG~nA~~LAeIIAA~vLAgELSll~ALaa~ 857 (886)
T TIGR00920 778 MEAWGPTGEDLYISCTMPSIEIGTVGGGTVLPPQSACLQMLGVRGANATRPGENAKQLARIVCATVMAGELSLMAALAAG 857 (886)
T ss_pred eeeeeccCCeEEEEEEcCCceEEeecCccCChhHHHHHHHhCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 87653 35689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhccCCccccc
Q 007956 563 QLVKSHMKYNRSSKDVTK 580 (583)
Q Consensus 563 gi~kgHMkL~R~~~~~~~ 580 (583)
|||||||+|||++.++..
T Consensus 858 ~l~k~Hm~L~R~~~a~~~ 875 (886)
T TIGR00920 858 HLVKSHMRHNRSSINLQS 875 (886)
T ss_pred chHHHHHHhccccccccC
Confidence 999999999999998765
No 4
>TIGR00533 HMG_CoA_R_NADP 3-hydroxy-3-methylglutaryl Coenzyme A reductase, hydroxymethylglutaryl-CoA reductase (NADP). This model represents archaeal examples of the enzyme hydroxymethylglutaryl-CoA reductase (NADP) (EC 1.1.1.34) and the catalytic domain of eukaryotic examples, which also contain a hydrophobic N-terminal domain. This enzyme synthesizes mevalonate, a precursor of isopentenyl pyrophosphate (IPP), a building block for the synthesis of cholesterol, isoprenoids, and other molecules. A related hydroxymethylglutaryl-CoA reductase, typified by an example from Pseudomonas mevalonii, is NAD-dependent and catabolic.
Probab=100.00 E-value=1.4e-129 Score=1023.71 Aligned_cols=395 Identities=52% Similarity=0.821 Sum_probs=382.3
Q ss_pred CCHHHHHHHhhcCCCCCCCcchhcccHHHHHHHHHHHHHHHhCCCCCCCCCCCCCcccccccccccceEEeeeceeeecC
Q 007956 167 EEDEEMIKSVVDGTTPSYSLESKLGDCRRAAAIRREALQRSTGKSLHGLPLEGFDYGSILGQCCEMPVGYVQIPVGIAGP 246 (583)
Q Consensus 167 ~~~~ei~~~v~~g~~~~~~lE~~l~d~~ra~~iRR~~l~~~tg~sl~~L~~~~~D~~~i~g~~iEN~IG~v~IPvGVAGP 246 (583)
++|+||++++.+|++++|+||+++ +++||+++||++|++.++.++++|+.+.+|++++.++||||+||+++||+|||||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~l~~~~-~~~~a~~~R~~~l~~~~~~~~~~l~~~~~d~~~~~~~~iEN~IG~~~vPlGvagp 79 (402)
T TIGR00533 1 MENNEILELVLNGKIKLYQLEKKL-GTTRAVEIRRKFIEKLAGLESEHLPNYSIDYERAFGANIENVIGYMQIPLGVAGP 79 (402)
T ss_pred CChHHHHHHHhcCCCCchhhhhhc-CcHHHHHHHHHHHHHhcCCChhhccccCCCHHHHhhcCceeccceeeeceeEecc
Confidence 479999999999999999999977 5999999999999999999999999999999999999999999999999999999
Q ss_pred eEEcC----eEEeeeccccchhHHHHhhhHHHHHhhCCCeEEEEcCCceEEceEEEeCCHHHHHHHHHHhcCCCCCcchh
Q 007956 247 LLLDG----REYSVPMATTEGCLVASANRGCKAIHLSGGATSVLLKDGMTRAPVVRFGSAKRAAELKLFLENPVNFDPLS 322 (583)
Q Consensus 247 L~InG----~ey~VPMATtEgsLVAS~nRGaKai~~sGG~~t~v~~d~MtRapV~~f~~~~~A~~~~~wl~~p~n~~~L~ 322 (583)
|+||| ++|+|||||||||||||+|||||+++.+||+++++++|+|+|+|+|+|+++.++.++.+|+++ |+++|+
T Consensus 80 l~InG~~a~~~~~VPmAT~E~slVAS~srGak~i~~~GG~~~~v~~~~M~r~~~~~~~~~~da~~~~~~i~~--~~~~i~ 157 (402)
T TIGR00533 80 LKIDGEYAKGEYYIPLATTEGALVASVNRGCSAITAGGGATVRVTKDGMTRAPVVRTPSVVRAGACRIWIDE--NQNAIK 157 (402)
T ss_pred EEEcCcccCceEEEeeeechhhHHHHHhHHHHHHHhcCCeEEEECCCcEEccEEEEeCChhhHHHHHHHHHH--HHHHHH
Confidence 99999 799999999999999999999999999999999999999999999999999999999999986 999999
Q ss_pred hhhhhcCCccceeeEEE-EeeCCeEEEEEEeeccccccchhHHHHHHHHHHHHHhhCC--CCcEEEeecCCccCccccee
Q 007956 323 MVFNKSSRFARLQAIKC-AIAGKNLYLRFTCSTGDAMGMNMVSKGVQNVLDFLQAEFP--DMDVIGISGNFCSDKKPAAV 399 (583)
Q Consensus 323 ~van~tsR~g~L~~I~~-~i~G~~l~lrf~~~TgDAMG~NMVn~~~e~v~~~l~~~~~--~~~~i~IsgN~ctDKK~sA~ 399 (583)
++||+++|||||++|++ .+.|+++||||.|+|||||||||||+++|++|++|+++|| ++++++||||||+||||+|+
T Consensus 158 ~~a~~tsr~g~l~~i~~~~~~g~~v~l~f~~~tgDAMG~Nmvn~a~e~v~~~i~~~~~~~~~~~~~I~sN~~tdkk~sa~ 237 (402)
T TIGR00533 158 EAAESTTRHGKLQKIQPICLAGDLLYPRFVTTTGDAMGMNMVTIATEYALKQMVEEYGWEGMEVVAVSGNYCTDKKPAAI 237 (402)
T ss_pred HHHHhhCCCCceeeeEEEeccCCEEEEEEEEEccccccchHHHHHHHHHHHHHHHHcCCCCceEEEEeccCccchhhhhh
Confidence 99999999999999998 6789999999999999999999999999999999999986 55789999999999999999
Q ss_pred ccccCCccEEEeeeechHHHHHHHHccCHHHHHhhhhhhhhhHhhhhhccccCCCCcchhHHHHHHHhCCCccccccccc
Q 007956 400 NWIEGRGKSVVCEAIIKGDVVRKVLKTNVDALVELNMLKNLTGSAMAGALGGFNAHASNIVTAVYIATGQDPAQNVESSH 479 (583)
Q Consensus 400 n~I~gRGksVvaea~i~~eVv~kiLkts~~al~eln~~knltGsa~aGs~gG~NkhiaNgIaAvfIATGQD~A~~VESS~ 479 (583)
||++||||+|+||+.||.+|++++++++++++++++..||+.||+++|++| ||||+||||+||||||||||||++|||+
T Consensus 238 n~~~gRGk~V~A~~~Ip~~v~~~il~~s~~a~~d~~rak~~~gs~~tg~~g-~N~~iaNgI~Av~lATGqD~A~v~ess~ 316 (402)
T TIGR00533 238 NLIEGRGKSIVAEATIPGDVVNKVLKTTVSALVEVNIAKNLIGSAMAGSMG-FNAHYANIIGAIFLATGQDEAHIVEGSL 316 (402)
T ss_pred cccccCCeEEEEEEEECHHHHHHHHCCCHHHHHhHHHHhhhHHHHHhcCCc-cCCcHHHHHHHHHhhcCCcHHHHHHhcc
Confidence 999999999999999999999999999999999999889999999999997 9999999999999999999999999999
Q ss_pred ceeeeEEecCCCcEEEEEEcCCceeEeecCcccchhHHHHHHHcCCCCCCCCCCCccHHHHHHHHHHHHHhhHHHHHHHh
Q 007956 480 CITMMEAINDGKDLHVSVTMPSIEVGTVGGGTQLASQSACLNLLGVKGANKESPGANSRLLATIVAGSVLAGELSLMSAL 559 (583)
Q Consensus 480 ~iT~~e~~~~g~dL~~SvtLPsL~VGTVGGGT~L~~q~~~L~lLGv~Ga~~~~pG~nAr~LAeIIAA~vLAgeLSll~AL 559 (583)
|+|+||. .+ ++||+|||||||+||||||||+||||++||+||||.|.+ ||++||+||||+|||||||+|+||
T Consensus 317 ~lt~~e~-~~-~~L~~sitlPsL~VGtVGGgt~l~~q~~~L~iLg~~g~~------~A~~LA~IiAa~~LA~els~l~Al 388 (402)
T TIGR00533 317 GITLAEE-VD-GDLYFSVSLPDVPVGTVGGGTVLETQGECLDLLGVRGGN------NARQFAEIVGCAVLAGELSLCGAL 388 (402)
T ss_pred ccceEEE-cC-CEEEEEEEcCCceEEeecCccCChHHHHHHHHhCCCCCC------CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999996 44 589999999999999999999999999999999998743 899999999999999999999999
Q ss_pred ccchHHHHHHhhcc
Q 007956 560 AAGQLVKSHMKYNR 573 (583)
Q Consensus 560 aa~gi~kgHMkL~R 573 (583)
++++||+|||+|+|
T Consensus 389 ~t~~i~~~Hm~L~R 402 (402)
T TIGR00533 389 AAGHLVQAHMELGR 402 (402)
T ss_pred hcCcHHHHHHHhcC
Confidence 99999999999998
No 5
>PF00368 HMG-CoA_red: Hydroxymethylglutaryl-coenzyme A reductase; InterPro: IPR002202 Synonym(s): 3-hydroxy-3-methylglutaryl-coenzyme A reductase, HMG-CoA reductase. There are two distinct classes of hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase enzymes: class I consists of eukaryotic and most archaeal enzymes (1.1.1.34 from EC), while class II consists of prokaryotic enzymes (1.1.1.88 from EC) [, ]. Class I HMG-CoA reductases catalyse the NADP-dependent synthesis of mevalonate from 3-hydroxy-3-methylglutaryl-CoA (HMG-CoA). In vertebrates, membrane-bound HMG-CoA reductase is the rate-limiting enzyme in the biosynthesis of cholesterol and other isoprenoids. In plants, mevalonate is the precursor of all isoprenoid compounds []. The reduction of HMG-CoA to mevalonate is regulated by feedback inhibition by sterols and non-sterol metabolites derived from mevalonate, including cholesterol. In archaea, HMG-CoA reductase is a cytoplasmic enzyme involved in the biosynthesis of the isoprenoids side chains of lipids []. Class I HMG-CoA reductases consist of an N-terminal membrane domain (lacking in archaeal enzymes), and a C-terminal catalytic region. The catalytic region can be subdivided into three domains: an N-domain (N-terminal), a large L-domain, and a small S-domain (inserted within the L-domain). The L-domain binds the substrate, while the S-domain binds NADP. Class II HMG-CoA reductases catalyse the reverse reaction of class I enzymes, namely the NAD-dependent synthesis of HMG-CoA from mevalonate and CoA []. Some bacteria, such as Pseudomonas mevalonii, can use mevalonate as the sole carbon source. Class II enzymes lack a membrane domain. Their catalytic region is structurally related to that of class I enzymes, but it consists of only two domains: a large L-domain and a small S-domain (inserted within the L-domain). As with class I enzymes, the L-domain binds substrate, but the S-domain binds NAD (instead of NADP in class I).; GO: 0004420 hydroxymethylglutaryl-CoA reductase (NADPH) activity, 0050662 coenzyme binding, 0015936 coenzyme A metabolic process, 0055114 oxidation-reduction process; PDB: 2Q6B_C 2Q6C_D 1HWI_C 1HWJ_C 3CD5_B 2R4F_C 1HWL_B 1HWK_C 1DQA_B 3CCT_D ....
Probab=100.00 E-value=4.1e-121 Score=955.07 Aligned_cols=371 Identities=46% Similarity=0.687 Sum_probs=344.3
Q ss_pred HHHHHHHHHHHHHHhCCC--CCCCCCCCCCcccccccccccceEEeeeceeeecCeEEcCeEEeeeccccchhHHHHhhh
Q 007956 194 RRAAAIRREALQRSTGKS--LHGLPLEGFDYGSILGQCCEMPVGYVQIPVGIAGPLLLDGREYSVPMATTEGCLVASANR 271 (583)
Q Consensus 194 ~ra~~iRR~~l~~~tg~s--l~~L~~~~~D~~~i~g~~iEN~IG~v~IPvGVAGPL~InG~ey~VPMATtEgsLVAS~nR 271 (583)
+|++++||++|++.++.+ +++++.+++|++++.++||||+||+++||+||||||+|||++|+|||||||||||||+||
T Consensus 1 ~ka~~~Rr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~iEN~IG~~~lPlGvagpl~InG~~y~VPmATeE~svVAsasr 80 (373)
T PF00368_consen 1 KKAIEERREFLEELTGTSEQLEHLPNYSLDPEEVADQMIENVIGYVQLPLGVAGPLLINGKDYYVPMATEEPSVVASASR 80 (373)
T ss_dssp -CHHHHHHHHHHTTSSCCCHHHHCTTTTS-HHTHHHHHSSSEEEEEEEEEEEEEEEEETTEEEEEEEE-SSTTHHHHHHH
T ss_pred CchHHHHHHHHHhhhCcchhHHhCCccCCCHHHHhccCCceeeeEEEEeeEEEccEEEcCEEEEeeeceechhHHHhhhh
Confidence 478999999999999988 899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCeEEEEcCCceEEceEEEeCCHHHHHHHHHHhcCCCCCcchhhhhhhcCCccceeeEEEEeeCCeEEEEEE
Q 007956 272 GCKAIHLSGGATSVLLKDGMTRAPVVRFGSAKRAAELKLFLENPVNFDPLSMVFNKSSRFARLQAIKCAIAGKNLYLRFT 351 (583)
Q Consensus 272 GaKai~~sGG~~t~v~~d~MtRapV~~f~~~~~A~~~~~wl~~p~n~~~L~~van~tsR~g~L~~I~~~i~G~~l~lrf~ 351 (583)
|||+++.+|||++++.++.|+|+|+|.|+++.++.++++|+++ |+++|+++||.+||||||++|++++.|+++|+||.
T Consensus 81 Gak~i~~sGG~~t~v~~~~m~rq~~~~f~~~~~a~~~~~~i~~--~~~~l~~~a~~~sr~ggl~~i~~~~~g~~v~l~~~ 158 (373)
T PF00368_consen 81 GAKAINESGGFTTSVLEDGMTRQPVFVFDDVEDAAAFKQWIEE--NFEELKEIANSTSRGGGLRDIEVRIVGRFVHLRFH 158 (373)
T ss_dssp HHHHHHHTTSBEEEEEEEEEEEEEEEE-SSHSHHHHHHHHHHH--THHHHHHHHHHHCCTEEEEEEEEEECSTEEEEEEE
T ss_pred HHHHHhhcCCeEEEEcCCceeeeeEEEeCCHhhHHHHHHHHHH--HHHHHHHhhhhcCCceeeeEEEEEecCCEEEEEEE
Confidence 9999999999999999999999999999999999999999996 99999999999999999999999999999999999
Q ss_pred eeccccccchhHHHHHHHHHHHHHhhCCCCcEEEeecCCccCcccceeccccCCccEEEeeeechHHHHHHHHccCHHHH
Q 007956 352 CSTGDAMGMNMVSKGVQNVLDFLQAEFPDMDVIGISGNFCSDKKPAAVNWIEGRGKSVVCEAIIKGDVVRKVLKTNVDAL 431 (583)
Q Consensus 352 ~~TgDAMG~NMVn~~~e~v~~~l~~~~~~~~~i~IsgN~ctDKK~sA~n~I~gRGksVvaea~i~~eVv~kiLkts~~al 431 (583)
|||||||||||||+++|++|+||+++|++..+++|+||||+||||+++||++||||+|.||+.||.++++++++++.+++
T Consensus 159 ~dtgDAMGaNmvn~~~e~v~~~i~~~~~~~~~~~I~sN~~~dKK~s~~n~~~grG~~v~A~~~ip~~~l~~~~~~~~~~v 238 (373)
T PF00368_consen 159 YDTGDAMGANMVNTATEAVCPWIEEQFGGMVLMSILSNLCTDKKPSAINWIEGRGKLVTAEATIPVEVLARVLGTTGEQV 238 (373)
T ss_dssp EEETTC--HHHHHHHHHHHHHHHHHHHTSEEEEEEE-SSSCCSS--HHHHHH--ECEEEEEEEEEHHHHHCSSSSHHHHH
T ss_pred EEccccchhhHHHHHHHHHHHHHHHhcccceEEeeecccchhhhhhhhheeccCCEEEEEEEEECHHHHhhhcCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhhhHhhhhhccccCCCCcchhHHHHHHHhCCCcccccccccceeeeEEecCCCcEEEEEEcCCceeEeecCcc
Q 007956 432 VELNMLKNLTGSAMAGALGGFNAHASNIVTAVYIATGQDPAQNVESSHCITMMEAINDGKDLHVSVTMPSIEVGTVGGGT 511 (583)
Q Consensus 432 ~eln~~knltGsa~aGs~gG~NkhiaNgIaAvfIATGQD~A~~VESS~~iT~~e~~~~g~dL~~SvtLPsL~VGTVGGGT 511 (583)
++++..+++.|+.++|+. |||||+||||+|||||||||||++.|||||++.++...++++||+|+|||||+||||||||
T Consensus 239 ~~i~~a~~~a~~~~~ra~-t~Nkg~~Ngi~Av~lATGqD~raV~~ssha~a~~~~~~~~~~L~~sitlPsL~VGtVGGgt 317 (373)
T PF00368_consen 239 AEINQASNLAGSDPYRAV-THNKGIMNGIAAVFLATGQDWRAVEESSHAYASMEGQYDGGDLYGSITLPSLPVGTVGGGT 317 (373)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHTT--HHHHHHHHHHHCTTTSSSTTTEEEEEEEEEEE---SBSCHH
T ss_pred HHHHHHHHHHhhhHhhcc-ccCCChHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcCCCCCeEEEEEEcCCceEEEecCCc
Confidence 999999999999999999 4999999999999999999999988999999999987776799999999999999999999
Q ss_pred cchhHHHHHHHcCCCCCCCCCCCccHHHHHHHHHHHHHhhHHHHHHHhccchHHHHHHhhcc
Q 007956 512 QLASQSACLNLLGVKGANKESPGANSRLLATIVAGSVLAGELSLMSALAAGQLVKSHMKYNR 573 (583)
Q Consensus 512 ~L~~q~~~L~lLGv~Ga~~~~pG~nAr~LAeIIAA~vLAgeLSll~ALaa~gi~kgHMkL~R 573 (583)
++|+|++||+||||+|.+ ||++||+||||+|||||||+|+||++++||+|||||||
T Consensus 318 ~lp~~~~~l~ilg~~g~~------~a~~LA~IiAa~gLA~nlsal~Al~t~giq~gHm~L~R 373 (373)
T PF00368_consen 318 GLPTQKECLKILGCPGPG------NARELAEIIAAVGLAQNLSALRALVTEGIQKGHMKLHR 373 (373)
T ss_dssp HHHHHHHHHHHTT-SS--------CHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHCT
T ss_pred cChhHHHHHHHhCCCCCC------CHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHhcC
Confidence 999999999999999865 79999999999999999999999999999999999997
No 6
>COG1257 HMG1 Hydroxymethylglutaryl-CoA reductase [Lipid metabolism]
Probab=100.00 E-value=8.3e-112 Score=890.45 Aligned_cols=402 Identities=46% Similarity=0.638 Sum_probs=387.6
Q ss_pred HHHHhhcCCCCCCCcchhcccHHHHHHHHHHHHHHHhCCCCCCCCCCCCCcc---cccccccccceEEeeeceeeecCeE
Q 007956 172 MIKSVVDGTTPSYSLESKLGDCRRAAAIRREALQRSTGKSLHGLPLEGFDYG---SILGQCCEMPVGYVQIPVGIAGPLL 248 (583)
Q Consensus 172 i~~~v~~g~~~~~~lE~~l~d~~ra~~iRR~~l~~~tg~sl~~L~~~~~D~~---~i~g~~iEN~IG~v~IPvGVAGPL~ 248 (583)
+++++..|++++|++|+.++ ..+++.+||++|++.++.+++++.....|+. +++++||||+||++|+|+||||||+
T Consensus 2 ~~~~~~~~~~~~~~~~~f~~-~~~a~~~Rr~~l~~~~~l~~~~~~~~~~d~~~~~~~~~~~iENvIG~~~lPlGia~~l~ 80 (436)
T COG1257 2 VVQKVLAGEIKLSELEKFYK-ANKAVEERRQALERFTGLSLEEIGSLSIDGSLPIDVANRNIENVIGTVQLPLGIAGPLL 80 (436)
T ss_pred hhhhhhcccchhhhhhhhcc-ccccHHHHHHHHHHHhCCChhhhhhhccCcchhHHHHHHhhhhhhceeeeecccccceE
Confidence 67899999999999999874 6699999999999999999999999888887 9999999999999999999999999
Q ss_pred EcCeEEeeeccccchhHHHHhhhHHHHHhhCCCeEEEEcCCceEEceEEEeCCHHHHHHHHHHhcCCCCCcchhhhhhhc
Q 007956 249 LDGREYSVPMATTEGCLVASANRGCKAIHLSGGATSVLLKDGMTRAPVVRFGSAKRAAELKLFLENPVNFDPLSMVFNKS 328 (583)
Q Consensus 249 InG~ey~VPMATtEgsLVAS~nRGaKai~~sGG~~t~v~~d~MtRapV~~f~~~~~A~~~~~wl~~p~n~~~L~~van~t 328 (583)
|||++|||||||||||||||+|||||+|+.+||+++++++|+|||+|+|+|.+..++.+++.|++.+++++.++++++++
T Consensus 81 InG~~Y~iPmATtEgalVAs~~rgaK~i~~~GG~~~~~~~~~Mtr~~v~~~~~~~~a~~~~~w~~~~e~~e~~k~~~~s~ 160 (436)
T COG1257 81 INGKEYYIPMATTEGALVASASRGAKLITASGGATARVTEDGMTRQPVFRFVSLPEAAKFAIWVKKKEIIELAKEAAPST 160 (436)
T ss_pred EcCceeEEeeeccchHHHHHHHhHHHHHHhcCCcEEEEeccccccccEEecCchHHHHHHHHHhhhHHHHHHHHHhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999888999999999999
Q ss_pred CCccceeeEEEEeeCCeEEEEEEeeccccccchhHHHHHHHHHHHHHhhC-CCCcEEEeecCCccCcccceeccccCCcc
Q 007956 329 SRFARLQAIKCAIAGKNLYLRFTCSTGDAMGMNMVSKGVQNVLDFLQAEF-PDMDVIGISGNFCSDKKPAAVNWIEGRGK 407 (583)
Q Consensus 329 sR~g~L~~I~~~i~G~~l~lrf~~~TgDAMG~NMVn~~~e~v~~~l~~~~-~~~~~i~IsgN~ctDKK~sA~n~I~gRGk 407 (583)
+||+|+++|++...|++||+||.+||||||||||||+++|+++++|+++| ++..+++|||||||||||+|+||++||||
T Consensus 161 ~~~~kl~~i~~~~~g~~l~l~~~~dT~DAMGmNMvn~~~E~v~~~i~~~~~~~~~~~~issN~ctdkk~~a~~~~~grgk 240 (436)
T COG1257 161 GRGGKLIHIEPFVEGNLLYLRFYVDTGDAMGMNMVNIATEAVAPFIEEETFGGAVLLAISSNLCTDKKPAAINSIEGRGK 240 (436)
T ss_pred CCcceeeeeeeeccCcEEEEEEEEecchhhhhHHHHHHHHHHHHHHHHhccCCceEEEEecccccccchhheEEEEeccc
Confidence 99999999999999999999999999999999999999999999999996 78999999999999999999999999999
Q ss_pred EEEeeeechHHHHHHHHccCHHHHHhhhhhhhhhHhhhhhccccCCCCcchhHHHHHHHhCCCcccccccccceeeeEEe
Q 007956 408 SVVCEAIIKGDVVRKVLKTNVDALVELNMLKNLTGSAMAGALGGFNAHASNIVTAVYIATGQDPAQNVESSHCITMMEAI 487 (583)
Q Consensus 408 sVvaea~i~~eVv~kiLkts~~al~eln~~knltGsa~aGs~gG~NkhiaNgIaAvfIATGQD~A~~VESS~~iT~~e~~ 487 (583)
+|++|..+|+|+|++|+++|+++++|+|..||+.||+|+|+.| ||+|.+|.+.|+|+|||||.||++|+|.|+|+++..
T Consensus 241 ~v~ae~~~~~evv~~il~at~~a~~d~~rakt~~ggamnG~~g-fna~~aN~~~Ai~~a~gqdaA~~~e~s~~~t~~~~~ 319 (436)
T COG1257 241 TVVAEATIPEEVVKKILKATPEAIVDVNRAKTLNGGAMNGIDG-FNAHTANDVRAIEAATGQDAAQVGEYSPLITWMEDQ 319 (436)
T ss_pred eeeccccchHHHHHHHHhcCHHHHhhHHHHHhhhhhhhhhHHH-HHHHHhhHHHHHHHHhCccHHhhcccCCceEEEEec
Confidence 9999999999999999999999999999999999999999998 999999999999999999999999999999988854
Q ss_pred cCCCcEEEEEEcCCceeEeecCcccchhHHHHHHHcCCCCCCCC-------CCCccHHHHHHHHHHHHHhhHHHHHHHhc
Q 007956 488 NDGKDLHVSVTMPSIEVGTVGGGTQLASQSACLNLLGVKGANKE-------SPGANSRLLATIVAGSVLAGELSLMSALA 560 (583)
Q Consensus 488 ~~g~dL~~SvtLPsL~VGTVGGGT~L~~q~~~L~lLGv~Ga~~~-------~pG~nAr~LAeIIAA~vLAgeLSll~ALa 560 (583)
+ ++|||+|+|||+++|||+||||.+|+|++||+||||.|++.- .||+|++.|++|+++.+|+||+||++|++
T Consensus 320 ~-~~~L~~svtlP~~~vgt~Gggt~lp~q~~~l~ilGV~ga~e~~~v~~~vgla~N~~alaalva~gi~aGemsL~aal~ 398 (436)
T COG1257 320 R-DGDLYGSVTLPSLVVGTGGGGTVLPTQREALKILGVAGAGELAGVLAAVGLAQNAAALAALVAEGILAGEMSLLAALA 398 (436)
T ss_pred C-CCcEEEEEEeccceeEeecCCCcChhHHHHHHHhCCCCcccchhhhcccChhhhHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4 459999999999999999999999999999999999998632 89999999999999999999999999999
Q ss_pred cchHHHHHHhhccCCc
Q 007956 561 AGQLVKSHMKYNRSSK 576 (583)
Q Consensus 561 a~gi~kgHMkL~R~~~ 576 (583)
++++.++|++++|...
T Consensus 399 A~~lg~ah~el~r~~~ 414 (436)
T COG1257 399 AGHLGAAHDELGRVVE 414 (436)
T ss_pred HHHhhhhHHHHhHHHH
Confidence 9999999999999533
No 7
>TIGR00532 HMG_CoA_R_NAD hydroxymethylglutaryl-CoA reductase, degradative. Most known examples of hydroxymethylglutaryl-CoA reductase are NADP-dependent (EC 1.1.1.34) from eukaryotes and archaea, involved in the biosynthesis of mevalonate from 3-hydroxy-3-methylglutaryl-CoA. This model, in contrast, is built from the two examples in completed genomes of sequences closely related to the degradative, NAD-dependent hydroxymethylglutaryl-CoA reductase of Pseudomonas mevalonii, a bacterium that can use mevalonate as its sole carbon source.
Probab=100.00 E-value=5.2e-107 Score=852.05 Aligned_cols=363 Identities=23% Similarity=0.286 Sum_probs=330.8
Q ss_pred hcCCCCCCCcchhcccHHHHHHHHHHHHHHHhC---CCCCCCCCCCCCcccccccccccceEEeeeceeeecCeEEcCeE
Q 007956 177 VDGTTPSYSLESKLGDCRRAAAIRREALQRSTG---KSLHGLPLEGFDYGSILGQCCEMPVGYVQIPVGIAGPLLLDGRE 253 (583)
Q Consensus 177 ~~g~~~~~~lE~~l~d~~ra~~iRR~~l~~~tg---~sl~~L~~~~~D~~~i~g~~iEN~IG~v~IPvGVAGPL~InG~e 253 (583)
.+|++++|+++...+=+++++..||++|++.++ .+++.|+...+|++...++||||+||+++||+||||||+|||++
T Consensus 3 ~~~~~~~~~~~~~~~f~~~s~~eR~~~l~~~~~l~~~~~~~l~~~~l~~~~a~~~~iEN~Ig~~~vPlGvAg~l~InG~~ 82 (393)
T TIGR00532 3 KEGKIRFAELSKIFGFYHKSVEEKLKEIAEFAELSDEEVKAFFSNGANEDFAFDRMIENVIGTFEFPIGIAKNFKIDGKD 82 (393)
T ss_pred cccccchhhhccccChhhcCHHHHHHHHHHhcCCCHHHHHHHhhCCCCHHHHhccCcccccceeeeceeEeccEEECCeE
Confidence 468999999987443377899999999999999 45667877788888777999999999999999999999999999
Q ss_pred EeeeccccchhHHHHhhhHHHHHhhCCCeEEEEcCCceEEc-eEEEeCCHHHHHHHHHHhcCCCCCcchhhhhhhcC---
Q 007956 254 YSVPMATTEGCLVASANRGCKAIHLSGGATSVLLKDGMTRA-PVVRFGSAKRAAELKLFLENPVNFDPLSMVFNKSS--- 329 (583)
Q Consensus 254 y~VPMATtEgsLVAS~nRGaKai~~sGG~~t~v~~d~MtRa-pV~~f~~~~~A~~~~~wl~~p~n~~~L~~van~ts--- 329 (583)
|+|||||||||||||+|||||+++.+|||++++.+++|+|+ |++.|+|+.++. ..|++ ++++|++++|+++
T Consensus 83 y~VPMATeE~svVAs~srGak~~~~~GG~~~~v~~~~M~gqi~~~~~~~~~~a~--~~~~~---~~~~i~~~a~~~~~~~ 157 (393)
T TIGR00532 83 YLIPIAIEEPSVVAAANFAAKIAEEADGFTSDGEGLGIIGQIQQIKIKNEKAAK--FEFLD---LGDEIIERAEECDPML 157 (393)
T ss_pred EEEEeeeccccHHHHHHHHHHHHHhcCCeEEEEcCCceEEEEEEEecCCHHHHH--HHHHH---HHHHHHHHHHHhCHHH
Confidence 99999999999999999999999999999999999999966 578999988765 45665 7999999999986
Q ss_pred --CccceeeEEEE----eeCCeEEEEEEeeccccccchhHHHHHHHHHHHHHhhCCCCcEEEeecCCccCcccceecccc
Q 007956 330 --RFARLQAIKCA----IAGKNLYLRFTCSTGDAMGMNMVSKGVQNVLDFLQAEFPDMDVIGISGNFCSDKKPAAVNWIE 403 (583)
Q Consensus 330 --R~g~L~~I~~~----i~G~~l~lrf~~~TgDAMG~NMVn~~~e~v~~~l~~~~~~~~~i~IsgN~ctDKK~sA~n~I~ 403 (583)
||||+++|+++ +.|+++|+||.|||||||||||||+++|++|++|++.||+..+++|+||||+|||+ +
T Consensus 158 ~~rggg~~~i~~r~~~~~~g~~v~l~~~~dtgDAMGaNmvn~~~Eav~~~i~~~~~~~~~~~IlsN~~~dk~~------~ 231 (393)
T TIGR00532 158 NNLGGGCKDIEARVIDIIEGGILILHIIVDTCDAMGANALNSIAEKVAEFIELEFGGECVLKIISNDAAEFTA------K 231 (393)
T ss_pred HhhcCCeEEEEEEeeecccCCEEEEEEEEecccccccHHHHHHHHHHHHHHHHhCCCceEEEEecCccccceE------E
Confidence 99999999986 56899999999999999999999999999999999999988889999999999977 5
Q ss_pred CCccEEEeeeechHH----HHHHHHccCHHHHHhhhhhhhhhHhhhhhccccCCCCcchhHHHHHHHhCCCccccccccc
Q 007956 404 GRGKSVVCEAIIKGD----VVRKVLKTNVDALVELNMLKNLTGSAMAGALGGFNAHASNIVTAVYIATGQDPAQNVESSH 479 (583)
Q Consensus 404 gRGksVvaea~i~~e----Vv~kiLkts~~al~eln~~knltGsa~aGs~gG~NkhiaNgIaAvfIATGQD~A~~VESS~ 479 (583)
+|||.+++|..++.+ +++|++++++++. .|+||++| ||||+||||+|||||||||||++.||+|
T Consensus 232 arg~~~~a~~~i~~~~~~~v~~ki~~~s~~a~--~d~~ra~t----------~Nkgi~NgI~Av~lATGqD~raVea~~h 299 (393)
T TIGR00532 232 ARAKADFDHDLIGGEDSWNLAEGIELASAFAA--ADEERAAT----------HNKGIMNGISALCIATFNDFRAIEAGAH 299 (393)
T ss_pred EEEEEEhheeecCchhhHHHHHHHHHHHHHhh--cChHhhhc----------ccchHHHHHHHHHhhcCCcHHHHHHhhh
Confidence 689999999999877 8999999999554 55899876 9999999999999999999987777776
Q ss_pred ----------ceeeeEEecCCCcEEEEEEcCCceeEeecCcccch-hHHHHHHHcCCCCCCCCCCCccHHHHHHHHHHHH
Q 007956 480 ----------CITMMEAINDGKDLHVSVTMPSIEVGTVGGGTQLA-SQSACLNLLGVKGANKESPGANSRLLATIVAGSV 548 (583)
Q Consensus 480 ----------~iT~~e~~~~g~dL~~SvtLPsL~VGTVGGGT~L~-~q~~~L~lLGv~Ga~~~~pG~nAr~LAeIIAA~v 548 (583)
|+|+||... +++||+|+||| |+||||||||+++ .|++||+||||+ ||++||+||||+|
T Consensus 300 ayAa~~G~Y~~lt~~e~~~-~g~L~gsitlP-L~VGtVGGgt~l~p~~~~~l~iLg~~---------~a~~LA~IiAavg 368 (393)
T TIGR00532 300 KFAAIGGKYFPLSKFEVDR-DGALVGEIEIP-LAVGTIGGAIKFNEAAIISFKILGVN---------SAEEFAGIAAALG 368 (393)
T ss_pred HHHHhcCCcccceEEEEcC-CCEEEEEEEEc-ceEEEecCccccCHHHHHHHHHhCCC---------CHHHHHHHHHHHH
Confidence 699999743 45899999999 9999999999995 678999999998 6899999999999
Q ss_pred HhhHHHHHHHhccchHHHHHHhhcc
Q 007956 549 LAGELSLMSALAAGQLVKSHMKYNR 573 (583)
Q Consensus 549 LAgeLSll~ALaa~gi~kgHMkL~R 573 (583)
||||||+|+||+++|||||||+||.
T Consensus 369 LA~nlsal~AL~t~giq~gHm~L~~ 393 (393)
T TIGR00532 369 LAQNFAALRALAFEGIQKGHMELHA 393 (393)
T ss_pred HHHHHHHHHHHhcCchHHHHHHhcC
Confidence 9999999999999999999999995
No 8
>cd00644 HMG-CoA_reductase_classII Class II hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase (HMGR). Hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase (HMGR), class II, prokaryotic enzyme is a homodimer. Class II enzymes are found primarily in prokaryotes and Archaeoglobus fulgidus and are soluble as they lack the membrane region. Enzymes catalyze the synthesis of coenzyme A and mevalonate in isoprenoid synthesis. Bacteria, such as Pseudomonas mevalonii, which rely solely on mevalonate for their carbon source, catalyze the reverse reaction, using an NAD-dependent HMGR to deacetylate mevalonate into 3-hydroxy-3-methylglutaryl-CoA. Human and bacterial HMGR differ in their active site architecture.
Probab=100.00 E-value=9e-107 Score=855.45 Aligned_cols=352 Identities=26% Similarity=0.328 Sum_probs=316.1
Q ss_pred HHHHHHHHHHHHHHH---hCCCCCCCCCCCCCcccccccccccceEEeeeceeeecCeEEcCeEEeeeccccchhHHHHh
Q 007956 193 CRRAAAIRREALQRS---TGKSLHGLPLEGFDYGSILGQCCEMPVGYVQIPVGIAGPLLLDGREYSVPMATTEGCLVASA 269 (583)
Q Consensus 193 ~~ra~~iRR~~l~~~---tg~sl~~L~~~~~D~~~i~g~~iEN~IG~v~IPvGVAGPL~InG~ey~VPMATtEgsLVAS~ 269 (583)
++.+++.||++|++. ++..++.++.++.|++++.++||||+||+++||+||||||+|||++|+|||||||||||||+
T Consensus 4 y~~s~~eR~~~l~~~~~lt~~~~~~l~~~~~~~~~~~~~~iEN~IG~~~vP~Gvag~l~InG~~y~VPMATeE~svVAs~ 83 (417)
T cd00644 4 YKLSPEERLQILAEFAGLSEEDVQLLKSGGALPLELADQMIENVIGTFSLPLGVATNFLVNGKDYLVPMATEEPSVVAAA 83 (417)
T ss_pred cccCHHHHHHHHHHhcCCCHHHHHHHhccCCChHHHHhcCcccccceeecceeEeccEEECCeEEEEeeeeccchHHHHH
Confidence 455789999999986 56567788888899999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHhhCCCeEEEEcCCceEEceEEEeCCHHHHHHHHHHhcCCCCCcchhhhhhhcC-----CccceeeEEEEeeC-
Q 007956 270 NRGCKAIHLSGGATSVLLKDGMTRAPVVRFGSAKRAAELKLFLENPVNFDPLSMVFNKSS-----RFARLQAIKCAIAG- 343 (583)
Q Consensus 270 nRGaKai~~sGG~~t~v~~d~MtRapV~~f~~~~~A~~~~~wl~~p~n~~~L~~van~ts-----R~g~L~~I~~~i~G- 343 (583)
|||||+++.+|||++++.+++|+|+|+| .++.++.++..|+++ ++++|+++||+++ |||||++|++++.|
T Consensus 84 srGak~i~~~GG~~~~~~~~~m~~q~~~--~~~~~a~~~~~~i~~--~~~~l~~~a~~~~ps~~~rgggl~~i~~~~~~~ 159 (417)
T cd00644 84 SNAAKIARKSGGFKTSSSDRLMIGQIQL--VDVSDPAKARAFILA--HKDEILEIANEAHPSLVKRGGGARDIEVRVLDA 159 (417)
T ss_pred hHHHHHHHhcCCEEEEECCCceEeccEE--CcccCHHHHHHHHHH--hHHHHHHHHHhhChhHHhcCCceeEEEEEecCC
Confidence 9999999999999999999999999985 677889999999986 8999999999984 99999999999988
Q ss_pred ---CeEEEEEEeeccccccchhHHHHHHHHHHHHHhhCCCCcEEEeecCCccCcccceeccccCCccEEEeeee-----c
Q 007956 344 ---KNLYLRFTCSTGDAMGMNMVSKGVQNVLDFLQAEFPDMDVIGISGNFCSDKKPAAVNWIEGRGKSVVCEAI-----I 415 (583)
Q Consensus 344 ---~~l~lrf~~~TgDAMG~NMVn~~~e~v~~~l~~~~~~~~~i~IsgN~ctDKK~sA~n~I~gRGksVvaea~-----i 415 (583)
+++|+||.|||||||||||||+++|++|++|+++||+..+++|+||||+||+++|...|+ .+.+ .
T Consensus 160 ~~~~~v~l~~~~dtgDAMGaNmvn~~~eav~~~l~~~~~~~~~~~IlsN~~tdk~v~A~~~ip-------~~~l~~~~~~ 232 (417)
T cd00644 160 DLGDFLSVHLLVDTKDAMGANIVNTMLEAVAPLLEEITGGEVLLRILSNYATERLVRAKVSIP-------VEALGTKGGS 232 (417)
T ss_pred CCCCeEEEEEEEEccchhcchhHHHHHHHHHHHHHHhCCcceeEEEeccCCCCceEEEEEEEc-------HHHhhhcccc
Confidence 999999999999999999999999999999999999988999999999999877744322 2221 1
Q ss_pred hHHHHHHHHccCHHHHHhhhhhhhhhHhhhhhccccCCCCcchhHHHHHHHhCCCcccccccc-c----------ceeee
Q 007956 416 KGDVVRKVLKTNVDALVELNMLKNLTGSAMAGALGGFNAHASNIVTAVYIATGQDPAQNVESS-H----------CITMM 484 (583)
Q Consensus 416 ~~eVv~kiLkts~~al~eln~~knltGsa~aGs~gG~NkhiaNgIaAvfIATGQD~A~~VESS-~----------~iT~~ 484 (583)
+++++++|++++.. +++|+||+.| ||||+||||+||||||||||| +|||+ | |+|+|
T Consensus 233 g~~va~~i~~~~~~--a~~d~~rA~t----------~Nkgi~NgI~Av~lATGqD~r-aVea~ahayA~~~g~y~~lt~~ 299 (417)
T cd00644 233 GEEVAKKIALASAF--AQVDPYRAAT----------HNKGIMNGIDAVVLATGNDWR-AVEAGAHAYAARSGQYRSLSTW 299 (417)
T ss_pred hhHHHHHHHHHHHH--HhhhHHHhhh----------ccccHHHHHHHHHhhCCCcHH-HHHhhhhhhhhhcCCcccceEE
Confidence 33677777777764 3455676654 999999999999999999995 68875 5 79999
Q ss_pred EEecCCCcEEEEEEcCCceeEeecCcccc-hhHHHHHHHcCCCCCCCCCCCccHHHHHHHHHHHHHhhHHHHHHHhccch
Q 007956 485 EAINDGKDLHVSVTMPSIEVGTVGGGTQL-ASQSACLNLLGVKGANKESPGANSRLLATIVAGSVLAGELSLMSALAAGQ 563 (583)
Q Consensus 485 e~~~~g~dL~~SvtLPsL~VGTVGGGT~L-~~q~~~L~lLGv~Ga~~~~pG~nAr~LAeIIAA~vLAgeLSll~ALaa~g 563 (583)
|.. +++||+||||| |+||||||||++ |+|++||+||||+ ||++||+||||+|||||||+|+||+++|
T Consensus 300 ~~~--~~~L~~sitlP-l~VGtVGGgt~l~p~~~~~L~ilg~~---------~A~~LA~Iiaa~gLA~nlsal~AL~t~g 367 (417)
T cd00644 300 EID--DGKLVGELELP-LAVGTVGGSTKVHPLAKLALKILGVP---------SAKELAEIIAAVGLAQNFAALRALATEG 367 (417)
T ss_pred EEc--CCEEEEEEEEe-eeeEeecCccCcCHHHHHHHHHhCCC---------CHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 974 45899999999 999999999995 8899999999998 7999999999999999999999999999
Q ss_pred HHHHHHhhccCCccccc
Q 007956 564 LVKSHMKYNRSSKDVTK 580 (583)
Q Consensus 564 i~kgHMkL~R~~~~~~~ 580 (583)
||||||+|||++.+++-
T Consensus 368 iq~gHm~L~~r~la~~~ 384 (417)
T cd00644 368 IQKGHMKLHARNLAIAA 384 (417)
T ss_pred hHHHHHHHHhhchhhhc
Confidence 99999999999988753
No 9
>cd00365 HMG-CoA_reductase Hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase (HMGR). Hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase (HMGR) is a tightly regulated enzyme, which catalyzes the synthesis of coenzyme A and mevalonate in isoprenoid synthesis. In mammals, this is the rate limiting committed step in cholesterol biosynthesis. Bacteria, such as Pseudomonas mevalonii, which rely solely on mevalonate for their carbon source, catalyze the reverse reaction, using an NAD-dependent HMGR to deacetylate mevalonate into 3-hydroxy-3-methylglutaryl-CoA. There are two classes of HMGR: class I enzymes which are found predominantly in eukaryotes and contain N-terminal membrane regions and class II enzymes which are found primarily in prokaryotes and are soluble as they lack the membrane region. With the exception of Archaeoglobus fulgidus, most archeae are assigned to class I, based on sequence similarity of the active site, even though they lack membrane regions. Yeast and human HMGR
Probab=100.00 E-value=4.1e-105 Score=834.30 Aligned_cols=359 Identities=24% Similarity=0.262 Sum_probs=331.5
Q ss_pred CCcchhcccHHHHHHHHHHHHHHHhCCCCCCCCCCCCCcccccccccccceEEeeeceeeecCeEEcCeEEeeeccccch
Q 007956 184 YSLESKLGDCRRAAAIRREALQRSTGKSLHGLPLEGFDYGSILGQCCEMPVGYVQIPVGIAGPLLLDGREYSVPMATTEG 263 (583)
Q Consensus 184 ~~lE~~l~d~~ra~~iRR~~l~~~tg~sl~~L~~~~~D~~~i~g~~iEN~IG~v~IPvGVAGPL~InG~ey~VPMATtEg 263 (583)
|.+|+.. +.+|++++|++++. +++..++.|+...+|++.. ++||||+||+++||+||||||+|||++|+||||||||
T Consensus 1 ~~~~~~~-~~~~~~~~~~~~~~-lt~~~~~~l~~~~l~~~~~-~~~iEN~IG~~~vPlGva~~l~InG~~y~VPmATeE~ 77 (376)
T cd00365 1 PAFRTLS-PHAARLDHIGQLLG-LSHDDVQLLANAALPMDIA-NGMIENVIGTFELPYAVASNFQIDGRDVLVPLVTEEP 77 (376)
T ss_pred Cchhhhc-CHHHHHHHHHHHhc-cChHHHhhccccCCCHHHH-hcccccccceeeeeeEEecCEEEcCcEEEEEeEecch
Confidence 4566655 78999999999985 5787888899888998877 8899999999999999999999999999999999999
Q ss_pred hHHHHhhhHHHHHhhCCCeEEEEcCCceEEceEEEeCCHHHHHHHHHHhcCCCCCcchhhhhhhcCCc-----cceeeEE
Q 007956 264 CLVASANRGCKAIHLSGGATSVLLKDGMTRAPVVRFGSAKRAAELKLFLENPVNFDPLSMVFNKSSRF-----ARLQAIK 338 (583)
Q Consensus 264 sLVAS~nRGaKai~~sGG~~t~v~~d~MtRapV~~f~~~~~A~~~~~wl~~p~n~~~L~~van~tsR~-----g~L~~I~ 338 (583)
|||||+|||||+++.+|||++++.+++|+|+|+|.|.+ ++.+++.|+.+ +|+++|+++||+++++ |||++|+
T Consensus 78 svVAs~srgak~i~~~GG~~~~~~~~~m~~q~~~~~~~--d~~~~~~~i~~-~~~~~i~~~a~~~~~~~~~rgggl~~i~ 154 (376)
T cd00365 78 SIVAAASYMAKLARAGGGFTTSSSAPLMHAQVQIVLIQ--DPLNAKLSLLR-SGKDEIIELANRKDQLLNSLGGGCRDIE 154 (376)
T ss_pred hHHHHHHHHHHHHHhcCCEEEEECCCcEEeeeEEEeCC--CHHHHHHHHHh-hhHHHHHHHHhhhCcchhccCccceEEE
Confidence 99999999999999999999999999999999999988 78889999984 2899999999999777 9999999
Q ss_pred EEeeCCeEEEEEEeeccccccchhHHHHHHHHHHHHHhhCCCCcEEEeecCCccCcccceeccccCCccEEEeeeechHH
Q 007956 339 CAIAGKNLYLRFTCSTGDAMGMNMVSKGVQNVLDFLQAEFPDMDVIGISGNFCSDKKPAAVNWIEGRGKSVVCEAIIKGD 418 (583)
Q Consensus 339 ~~i~G~~l~lrf~~~TgDAMG~NMVn~~~e~v~~~l~~~~~~~~~i~IsgN~ctDKK~sA~n~I~gRGksVvaea~i~~e 418 (583)
+++.|+++|+||.|||||||||||||+++|+++++|++.+++.++..+++|+|+ +|||.|+||+.||.+
T Consensus 155 ~~~~~~~v~l~~~~dtgDAMGaNmvn~~~eav~~~i~~~~~~~~~~~~si~~n~-----------~~g~~v~A~~~I~~~ 223 (376)
T cd00365 155 VHTFGPMLVAHLIVDVGDAMGANMINTMAEAVAPLMEAYTGGMQVRLRSLSNLT-----------GDGRLARAQARITPQ 223 (376)
T ss_pred EEeeCCEEEEEEEEEccchhhchhHHHHHHHHHHHHHHHcCCCceEEEEEeccc-----------CCCcEEEEEEEEcHH
Confidence 999999999999999999999999999999999999999988754455555555 899999999999999
Q ss_pred HHHHHH---ccCHHHHHhhhhhhhhhHhhhhhccccCCCCcchhHHHHHHHhCCCcccc-ccccc-------ceeeeEEe
Q 007956 419 VVRKVL---KTNVDALVELNMLKNLTGSAMAGALGGFNAHASNIVTAVYIATGQDPAQN-VESSH-------CITMMEAI 487 (583)
Q Consensus 419 Vv~kiL---kts~~al~eln~~knltGsa~aGs~gG~NkhiaNgIaAvfIATGQD~A~~-VESS~-------~iT~~e~~ 487 (583)
++++.+ +++++.+++++..|+..|+.+|| |||||+||||+|||||||||||++ +|++. |+|+||..
T Consensus 224 ~l~~~~~~g~~~a~~i~~~~~~~a~~d~~rA~---t~Nkgi~NgI~Av~iATGqD~raVea~~h~yA~~~Y~~lt~~e~~ 300 (376)
T cd00365 224 QLETAEFSGEAVIEGILDAYAFKAAVDSYRAA---THNKGIMNGVDPLIVACGQDWRAVEVGAHAYACRHYGSLTTWEKD 300 (376)
T ss_pred HHhhhccccccHHHHHHHHHHHHHhhhhHhhc---cccccHHHHHHHHHhhcCCcHHHHHHHHHHHhhccCCcceEEEEc
Confidence 999999 99999999999889999999999 599999999999999999999654 56677 99999975
Q ss_pred cCCCcEEEEEEcCCceeEeecCccc-chhHHHHHHHcCCCCCCCCCCCccHHHHHHHHHHHHHhhHHHHHHHhccchHHH
Q 007956 488 NDGKDLHVSVTMPSIEVGTVGGGTQ-LASQSACLNLLGVKGANKESPGANSRLLATIVAGSVLAGELSLMSALAAGQLVK 566 (583)
Q Consensus 488 ~~g~dL~~SvtLPsL~VGTVGGGT~-L~~q~~~L~lLGv~Ga~~~~pG~nAr~LAeIIAA~vLAgeLSll~ALaa~gi~k 566 (583)
++ ++||+|+||| |+||||||||+ +|+|++||+||||++ |++||+||||+|||||||+|+||+++||||
T Consensus 301 ~~-~~L~~sitlp-l~VGtVGGgt~~lp~~~~~L~iLg~~~---------a~~LA~IiAavgLA~nlsal~ALat~giq~ 369 (376)
T cd00365 301 NN-GHLVITLEMS-MPVGLVGGATKTHPLAQASLRILGVKT---------AQALARIAVAVGLAQNLGAMRALATEGIQR 369 (376)
T ss_pred CC-CeEEEEEEEe-EEEEeecCcccCCHHHHHHHHHhCCcC---------HHHHHHHHHHHHHHHHHHHHHHHhcCcHHH
Confidence 33 5899999996 99999999999 899999999999994 899999999999999999999999999999
Q ss_pred HHHhhcc
Q 007956 567 SHMKYNR 573 (583)
Q Consensus 567 gHMkL~R 573 (583)
|||||||
T Consensus 370 gHm~L~~ 376 (376)
T cd00365 370 GHMALHA 376 (376)
T ss_pred HHHHhcC
Confidence 9999997
No 10
>COG1257 HMG1 Hydroxymethylglutaryl-CoA reductase [Lipid metabolism]
Probab=98.81 E-value=7.4e-10 Score=119.09 Aligned_cols=114 Identities=18% Similarity=0.128 Sum_probs=77.0
Q ss_pred cCCCCcchhHHHHHHHhCCCcccccccc-cceeeeEEecCCCcEEEEEEc-CC-ceeEeecCcccchhH-----------
Q 007956 451 GFNAHASNIVTAVYIATGQDPAQNVESS-HCITMMEAINDGKDLHVSVTM-PS-IEVGTVGGGTQLASQ----------- 516 (583)
Q Consensus 451 G~NkhiaNgIaAvfIATGQD~A~~VESS-~~iT~~e~~~~g~dL~~SvtL-Ps-L~VGTVGGGT~L~~q----------- 516 (583)
.||+++|||++|+.+|||||| +++|++ |...-.. .+...++-+.+- +- =-+| ...||.+
T Consensus 272 t~~ggamnG~~gfna~~aN~~-~Ai~~a~gqdaA~~--~e~s~~~t~~~~~~~~~L~~----svtlP~~~vgt~Gggt~l 344 (436)
T COG1257 272 TLNGGAMNGIDGFNAHTANDV-RAIEAATGQDAAQV--GEYSPLITWMEDQRDGDLYG----SVTLPSLVVGTGGGGTVL 344 (436)
T ss_pred hhhhhhhhhHHHHHHHHhhHH-HHHHHHhCccHHhh--cccCCceEEEEecCCCcEEE----EEEeccceeEeecCCCcC
Confidence 489999999999999999999 799998 4322111 112223333222 21 1222 2245532
Q ss_pred HHHHHHcCCCCCCCCCCCccHHHHHHHHHHHHHhhHHHHHHHhccchHHHHHHhhccCCcc
Q 007956 517 SACLNLLGVKGANKESPGANSRLLATIVAGSVLAGELSLMSALAAGQLVKSHMKYNRSSKD 577 (583)
Q Consensus 517 ~~~L~lLGv~Ga~~~~pG~nAr~LAeIIAA~vLAgeLSll~ALaa~gi~kgHMkL~R~~~~ 577 (583)
-..-..|.+-|-. .+++||.++|+++|+||+++|+||++.++|+|||+||.+..+
T Consensus 345 p~q~~~l~ilGV~------ga~e~~~v~~~vgla~N~~alaalva~gi~aGemsL~aal~A 399 (436)
T COG1257 345 PTQREALKILGVA------GAGELAGVLAAVGLAQNAAALAALVAEGILAGEMSLLAALAA 399 (436)
T ss_pred hhHHHHHHHhCCC------CcccchhhhcccChhhhHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 2223333333321 467899999999999999999999999999999999986544
No 11
>PF14150 YesK: YesK-like protein
Probab=73.11 E-value=3.4 Score=36.33 Aligned_cols=56 Identities=20% Similarity=0.446 Sum_probs=35.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHhhhhcCCCccccc-hHHHHHHHHHHHHHHHHHhhcCcc
Q 007956 33 YIINALFFTLFFTVVYYLLSRWREKIRNSTPLHVVT-LSEMVAIVAFVASCIYLLGFFGID 92 (583)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 92 (583)
|+.-++++.+.|+++|++=+||++|- |--.++ ..=+..+..++-|.++.=|+.|++
T Consensus 2 ~llg~~~~ii~f~~S~~lr~r~p~k~----~~~il~~ililis~~~v~~S~f~vGGweGmg 58 (81)
T PF14150_consen 2 YLLGIVTFIIVFGVSVLLRKRFPKKQ----PEIILPLILILISLLTVLISIFLVGGWEGMG 58 (81)
T ss_pred cHHHHHHHHHHHHHHHHHHHhCCCcc----hhHHHHHHHHHHHHHHHHHHHheEcchhhhh
Confidence 67778899999999999999999984 444433 222233334444555545555544
No 12
>PF14715 FixP_N: N-terminal domain of cytochrome oxidase-cbb3, FixP
Probab=54.12 E-value=16 Score=29.48 Aligned_cols=25 Identities=32% Similarity=0.547 Sum_probs=22.6
Q ss_pred CCchHHHHhHHHHHHHHHHHHHHHH
Q 007956 28 LPLPLYIINALFFTLFFTVVYYLLS 52 (583)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~ 52 (583)
-|||-...-.++.+.+|++.|+++.
T Consensus 18 nplP~ww~~~f~~tivfa~~Y~~~y 42 (51)
T PF14715_consen 18 NPLPRWWLWLFYGTIVFAVGYLVLY 42 (51)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999999874
No 13
>PF14012 DUF4229: Protein of unknown function (DUF4229)
Probab=53.08 E-value=22 Score=30.13 Aligned_cols=31 Identities=26% Similarity=0.511 Sum_probs=24.0
Q ss_pred CchHHHHhHHHHHHHHHHHHHHHHHHHhhhh
Q 007956 29 PLPLYIINALFFTLFFTVVYYLLSRWREKIR 59 (583)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (583)
+.|+.+.=.+-..+=+..+|++++|||+++-
T Consensus 29 ~~p~~~~~l~A~vis~~lS~~ll~~~R~~~~ 59 (69)
T PF14012_consen 29 EVPLLVAALLALVISMPLSYVLLRRLRDRAS 59 (69)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666776666666777889999999999864
No 14
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=50.39 E-value=47 Score=32.44 Aligned_cols=67 Identities=31% Similarity=0.621 Sum_probs=40.0
Q ss_pred hcccCCCchHHHHhHH------HH-------HHHHHHHHHHHHHHHhhhhcCCCccccchHHHHH-HHHHHHHHHHHHhh
Q 007956 23 ETHAQLPLPLYIINAL------FF-------TLFFTVVYYLLSRWREKIRNSTPLHVVTLSEMVA-IVAFVASCIYLLGF 88 (583)
Q Consensus 23 ~~~~~~~~~~~~~~~~------~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 88 (583)
...+...+|.+++|=. |. ..+|.+.|||..+ . .+ |+-. ++.++..+.|.+|+
T Consensus 46 ~~~~~~~IP~~Vs~RM~rRm~~~~GiP~~lG~~~f~~~y~l~~~--~---------~~---dvP~~~~~~~S~~~Fg~gl 111 (153)
T PF11947_consen 46 RDEDDSAIPEVVSNRMLRRMAVFVGIPTALGVAVFVVFYYLKSR--Q---------IV---DVPPWAVLLVSLVFFGLGL 111 (153)
T ss_pred ccccccccCHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHhc--c---------cc---ccCchHHHHHHHHHHHHHH
Confidence 3566778888999832 21 2366777887764 1 12 2222 33344445688999
Q ss_pred cCccccccccCCCCCccccc
Q 007956 89 FGIDFVQSILRPSADVWASE 108 (583)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~ 108 (583)
.||.|- +++ .+||.+
T Consensus 112 lGisYG--ilS---aSWD~~ 126 (153)
T PF11947_consen 112 LGISYG--ILS---ASWDPE 126 (153)
T ss_pred Hhhhhh--hcc---cccCCC
Confidence 999984 223 368644
No 15
>PRK09509 fieF ferrous iron efflux protein F; Reviewed
Probab=46.77 E-value=42 Score=34.82 Aligned_cols=66 Identities=12% Similarity=0.179 Sum_probs=46.4
Q ss_pred CcchhhhhhhcCCccceeeEEEEeeCCeEEEEEEeeccccccchhHHHHHHHHHHHHHhhCCCCcE
Q 007956 318 FDPLSMVFNKSSRFARLQAIKCAIAGKNLYLRFTCSTGDAMGMNMVSKGVQNVLDFLQAEFPDMDV 383 (583)
Q Consensus 318 ~~~L~~van~tsR~g~L~~I~~~i~G~~l~lrf~~~TgDAMG~NMVn~~~e~v~~~l~~~~~~~~~ 383 (583)
.+++++..++....-++.+++++..|+..++.+++..-+.|-..=.....+.+-+.|++.+|..++
T Consensus 215 ~~~I~~~i~~~~~v~~v~~l~~~~~G~~~~v~v~i~v~~~~~~~e~h~i~~~ie~~l~~~~~~~~v 280 (299)
T PRK09509 215 RQEIIDIVTSWPGVSGAHDLRTRQSGPTRFIQLHLEMEDNLPLVQAHMIADQVEQALLRRFPGSDV 280 (299)
T ss_pred HHHHHHHHHhCCCCcCceeeeeEeeCCeEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHhCCCCEE
Confidence 345666666655556777899999999888888887766664333444567777888888887654
No 16
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=42.47 E-value=20 Score=32.46 Aligned_cols=27 Identities=26% Similarity=0.429 Sum_probs=21.8
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHhh
Q 007956 31 PLYIINALFFTLFFTVVYYLLSRWREK 57 (583)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (583)
+-.++..+.|.+||.+.|||+.|=..|
T Consensus 6 ~~~~~~ll~~vl~~~ifyFli~RPQrK 32 (97)
T COG1862 6 GSGLVLLLPLVLIFAIFYFLIIRPQRK 32 (97)
T ss_pred cccHHHHHHHHHHHHHHHHhhcCHHHH
Confidence 456788899999999999998765443
No 17
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=40.34 E-value=27 Score=34.19 Aligned_cols=22 Identities=14% Similarity=0.501 Sum_probs=17.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHH
Q 007956 33 YIINALFFTLFFTVVYYLLSRW 54 (583)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~ 54 (583)
|..+.++|.++|.++||+|.++
T Consensus 30 ~~~q~~~~lI~F~iL~~ll~k~ 51 (181)
T PRK13454 30 FPNQIFWLLVTLVAIYFVLTRV 51 (181)
T ss_pred cchHHHHHHHHHHHHHHHHHHH
Confidence 4457778888899999998773
No 18
>TIGR01297 CDF cation diffusion facilitator family transporter. This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.
Probab=40.27 E-value=1.1e+02 Score=30.49 Aligned_cols=66 Identities=6% Similarity=0.127 Sum_probs=43.6
Q ss_pred CcchhhhhhhcCCccceeeEEEEeeCC-eEEEEEEeeccccccchhHHHHHHHHHHHHHhhCCCCcE
Q 007956 318 FDPLSMVFNKSSRFARLQAIKCAIAGK-NLYLRFTCSTGDAMGMNMVSKGVQNVLDFLQAEFPDMDV 383 (583)
Q Consensus 318 ~~~L~~van~tsR~g~L~~I~~~i~G~-~l~lrf~~~TgDAMG~NMVn~~~e~v~~~l~~~~~~~~~ 383 (583)
.+++.+..++....-++.+++++..|+ .+++.+++...+.|-..-.....+.+-+.+++++|+.+.
T Consensus 194 ~~~i~~~i~~~~~v~~v~~~~~~~~G~~~~~v~~~v~v~~~~~~~~ah~i~~~i~~~i~~~~~~v~~ 260 (268)
T TIGR01297 194 LEEIKKAILSIPGVKGVHDLHIWRIGPGKLFLDVHVVVDPDLDLKQAHDIALEIEREILKRHPGIEH 260 (268)
T ss_pred HHHHHHHHhcCCCcccceEeEEEEcCCCCEEEEEEEEECCCCChhHHHHHHHHHHHHHHHhcCCCCe
Confidence 344555555434445677889999998 888888887766554444455667777777766777643
No 19
>COG5522 Predicted integral membrane protein [Function unknown]
Probab=36.97 E-value=64 Score=33.39 Aligned_cols=73 Identities=22% Similarity=0.425 Sum_probs=46.0
Q ss_pred cccCCCchHHHHhHHHH--HHHHHHHHHHHHHH-----HhhhhcCCCccccchHHHHHHHHHHH------HHHHHHhhcC
Q 007956 24 THAQLPLPLYIINALFF--TLFFTVVYYLLSRW-----REKIRNSTPLHVVTLSEMVAIVAFVA------SCIYLLGFFG 90 (583)
Q Consensus 24 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~ 90 (583)
..+.+|.|....|..-| .+.++-. ...-| ++..|+|-|+|.-...-|.+++.++- ++.|+-|+ |
T Consensus 29 l~f~vp~~raf~fl~afg~~lLg~~l--g~~lw~~~~dg~tvrqslPfhlsda~~ilsaimlitrsrilf~~lyfwgi-g 105 (236)
T COG5522 29 LIFVVPIARAFNFLPAFGWVLLGATL--GSNLWNFMPDGYTVRQSLPFHLSDALRILSAIMLITRSRILFSVLYFWGI-G 105 (236)
T ss_pred HHHhhHHHHHHhhhHHHHHHHHHHHH--HHHHHhhccCceeHhhcCCcccchHHHHHHHHHHHhcchHhhhhHHHhhh-h
Confidence 45677777777776633 3333332 23334 46899999999988888777777653 56665553 5
Q ss_pred ccccccccCC
Q 007956 91 IDFVQSILRP 100 (583)
Q Consensus 91 ~~~~~~~~~~ 100 (583)
|+| |++.-|
T Consensus 106 ~sf-~AlltP 114 (236)
T COG5522 106 ISF-MALLTP 114 (236)
T ss_pred HHH-HHHHcC
Confidence 545 555554
No 20
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=35.99 E-value=1e+02 Score=32.73 Aligned_cols=78 Identities=9% Similarity=0.236 Sum_probs=56.9
Q ss_pred CCcchhhhhhhcCCccceeeEEEEeeCCeEEEEEEeeccccccchhHHHHHHHHHHHHHhhCCCCcEEEeecCCccCc
Q 007956 317 NFDPLSMVFNKSSRFARLQAIKCAIAGKNLYLRFTCSTGDAMGMNMVSKGVQNVLDFLQAEFPDMDVIGISGNFCSDK 394 (583)
Q Consensus 317 n~~~L~~van~tsR~g~L~~I~~~i~G~~l~lrf~~~TgDAMG~NMVn~~~e~v~~~l~~~~~~~~~i~IsgN~ctDK 394 (583)
..++++++..+....-++.+++.+..|+..++++++...+.|--==.-..++.+-+.|++.+|....+.|.-+=+.++
T Consensus 216 ~~~~i~~~i~~~~~V~~v~~lr~R~~G~~~~id~~i~v~~~ls~~eah~I~~~ie~~i~~~~~~~~~v~IhveP~~~~ 293 (304)
T COG0053 216 DLEKIRAIILSVPGVKGVHDLRTRKSGSRIFIDVHIEVDPDLSLEEAHEIADEVEKRIKKEFPKVADVTIHVEPLGEK 293 (304)
T ss_pred HHHHHHHHHhcCCcceeeecceeeeeCCeEEEEEEEEECCCCChHHHHHHHHHHHHHHHHhcCCCceEEEEecCCccc
Confidence 345556666666666788899999999999999999998887765556677778888888888655555555544443
No 21
>TIGR00782 ccoP cytochrome c oxidase, cbb3-type, subunit III. This model describes a di-heme subunit of approximately 26 kDa of the cbb3 type copper and heme-containing cytochrome oxidase.
Probab=32.30 E-value=42 Score=34.85 Aligned_cols=25 Identities=20% Similarity=0.429 Sum_probs=23.1
Q ss_pred CCchHHHHhHHHHHHHHHHHHHHHH
Q 007956 28 LPLPLYIINALFFTLFFTVVYYLLS 52 (583)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~ 52 (583)
-|||-+..-.++.|++|+++|+++.
T Consensus 24 n~~P~ww~~~f~~~i~~~~~y~~~y 48 (285)
T TIGR00782 24 NPLPRWWLWTFYATIVWGFGYLVAY 48 (285)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 4999999999999999999998875
No 22
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=31.98 E-value=1.1e+02 Score=28.38 Aligned_cols=46 Identities=24% Similarity=0.408 Sum_probs=24.8
Q ss_pred chHHHHHHHHHHHHHHHHH-hhcCccccccccCCCCCcccccccccc
Q 007956 68 TLSEMVAIVAFVASCIYLL-GFFGIDFVQSILRPSADVWASEDLEEE 113 (583)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (583)
.++-+++++.++..++|++ +++.......-.|...-.|..++++||
T Consensus 86 ~~~~i~g~~~~~~G~~~i~l~~~~~~~~~~~~r~~~~~~~~~~~~~~ 132 (136)
T PF08507_consen 86 ILSIIIGLLLFLVGVIYIILGFFCPIKEPESMREQEIALSSQQDNED 132 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCchhcCcccccccccccccc
Confidence 3455666667777777765 555544433323444445555554444
No 23
>TIGR02206 intg_mem_TP0381 conserved hypothetical integral membrane protein TIGR02206. This model represents a family of hydrophobic proteins with seven predicted transmembrane alpha helices. Members are found in Bacillus subtilis (ywaF), TP0381 from Treponema pallidum (TP0381), Streptococcus pyogenes, Rhodococcus erythropolis, etc.
Probab=31.69 E-value=92 Score=31.57 Aligned_cols=45 Identities=24% Similarity=0.476 Sum_probs=37.2
Q ss_pred hhhcCCCccccchHHHHHHHHHH------HHHHHHHhhcCccccccccCCCCC
Q 007956 57 KIRNSTPLHVVTLSEMVAIVAFV------ASCIYLLGFFGIDFVQSILRPSAD 103 (583)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 103 (583)
-++++-|||.-+++-+++++.++ -.+.|.+|+.| -+|.++.|+-+
T Consensus 63 ~~~e~LPLhlC~ia~~~~~~~l~~~~~~~~~~~~~~gi~G--a~~Ali~Pd~~ 113 (222)
T TIGR02206 63 TLDESLPLHLCDIAIILAAIMLITKRRWFFQLTYFWGIGG--SFQALLTPDLY 113 (222)
T ss_pred chhhcCChhhccHHHHHHHHHHHcCcHHHHHHHHHHHHHH--HHHHHhcCCCc
Confidence 57799999999999999888875 46888888877 78998877543
No 24
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=30.62 E-value=92 Score=35.27 Aligned_cols=43 Identities=14% Similarity=0.371 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHhhhhcCCCcc--ccchHHHHHHHHHHHHHHHH
Q 007956 43 FFTVVYYLLSRWREKIRNSTPLH--VVTLSEMVAIVAFVASCIYL 85 (583)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 85 (583)
+|.+.|.+.|=|-|-+|...... -++.+.+.+++.++..++|+
T Consensus 228 lYli~Ygi~RF~iEflR~d~~~~~~gl~~~Q~lSl~~il~gl~~~ 272 (460)
T PRK13108 228 FYVAFYCAGRFCVELLRDDPATLIAGIRINSFTSTFVFIGAVVYI 272 (460)
T ss_pred HHHHHHHHHHHHhhhhccCchhhhcCccHHHHHHHHHHHHHHHHH
Confidence 35566777888889999876422 37888988888888877665
No 25
>PF13858 DUF4199: Protein of unknown function (DUF4199)
Probab=30.59 E-value=1.6e+02 Score=27.37 Aligned_cols=49 Identities=14% Similarity=0.341 Sum_probs=34.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhcCCCccccchHHH---HHHHHHHHHHHHHHhh
Q 007956 36 NALFFTLFFTVVYYLLSRWREKIRNSTPLHVVTLSEM---VAIVAFVASCIYLLGF 88 (583)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 88 (583)
+-+.+.+.+...|+.+++-|||..+. ..++.+- .-+++++|++++.+.-
T Consensus 34 ~~~~~~~~~~~i~~~i~~~R~~~~~g----~isf~~a~~~g~~~~~ia~li~~v~~ 85 (163)
T PF13858_consen 34 GILSMVITIIFIYFAIRRYRKKYNGG----FISFGQAFKVGFLISLIAGLISAVFQ 85 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCC----CeeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667777778899999999987655 4777774 4456667777665543
No 26
>PF01578 Cytochrom_C_asm: Cytochrome C assembly protein; InterPro: IPR002541 This entry consists of various proteins involved in cytochrome c assembly from mitochondria and bacteria; CycK from Rhizobium leguminosarum [], CcmC from Escherichia coli and Paracoccus denitrificans [, ] and orf240 from Triticum aestivum (Wheat) mitochondria []. The members of this family are probably integral membrane proteins with six predicted transmembrane helices that may comprise the membrane component of an ABC (ATP binding cassette) transporter complex. This transporter may be necessary for transport of some component needed for cytochrome c assembly. One member, R. leguminosarum CycK, contains a putative haem-binding motif []. Wheat orf240 also contains a putative haem-binding motif and is a proposed ABC transporter with c-type haem as its proposed substrate []. However it seems unlikely that all members of this family transport haem or c-type apocytochromes because P. denitrificans CcmC transports neither [].; GO: 0006461 protein complex assembly, 0008535 respiratory chain complex IV assembly, 0016020 membrane
Probab=29.05 E-value=1.1e+02 Score=29.93 Aligned_cols=50 Identities=20% Similarity=0.426 Sum_probs=34.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhcCCCccccchHHHHHHHHHHHHHHHHHhhcCcccccc
Q 007956 36 NALFFTLFFTVVYYLLSRWREKIRNSTPLHVVTLSEMVAIVAFVASCIYLLGFFGIDFVQS 96 (583)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (583)
+.-+++.++-.+|+.+|.++ +.| ...++..+.++.++-+++|||+.++..
T Consensus 162 ~~sli~Wl~y~~~lh~r~~~-~~~----------gr~~a~~~i~gf~~~~~~~~gv~~~~~ 211 (214)
T PF01578_consen 162 VWSLITWLVYGAYLHLRSWK-GWR----------GRRAAYLSIIGFLLLLLSYFGVNLLLE 211 (214)
T ss_pred HHHHHHHHHHHHHHHHHHhh-chh----------hHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34455556666666666555 444 234678888888899999999998764
No 27
>PF01545 Cation_efflux: Cation efflux family; InterPro: IPR002524 Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt. These proteins are considered to be efflux pumps that remove these ions from cells [, ], however others are implicated in ion uptake []. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3BYP_B 3BYR_A 3H90_B 2QFI_B 2ZZT_A.
Probab=24.52 E-value=3.8e+02 Score=26.88 Aligned_cols=65 Identities=8% Similarity=0.196 Sum_probs=47.8
Q ss_pred cchhhhhhhcCCccceeeEEEEeeCC-eEEEEEEeeccccccchhHHHHHHHHHHHHHhhCCCCcE
Q 007956 319 DPLSMVFNKSSRFARLQAIKCAIAGK-NLYLRFTCSTGDAMGMNMVSKGVQNVLDFLQAEFPDMDV 383 (583)
Q Consensus 319 ~~L~~van~tsR~g~L~~I~~~i~G~-~l~lrf~~~TgDAMG~NMVn~~~e~v~~~l~~~~~~~~~ 383 (583)
+++++..++....-.+.+++++..|+ .+++.+++..-..|-.-=.....+.+.+.+++++++..-
T Consensus 208 ~~i~~~i~~~~~v~~v~~~~~~~~g~~~~~v~i~v~v~~~~~v~~~~~i~~~i~~~l~~~~~~i~~ 273 (284)
T PF01545_consen 208 EKIRRIIESVPGVIEVHDLRVWQVGRNKYVVEIHVQVDPDMSVEEAHEIRERIEKRLREKFPGIYD 273 (284)
T ss_dssp HHHHHHHHHTSS-SEEEEEEEEEETT-EEEEEEEEEETTTSBHHHHHHHHHHHHHHHHHHSTTCEE
T ss_pred hHHHHhhccCCceEeccceEEEEecCCcEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCCcEE
Confidence 45555555556667889999999998 888888888777664444445678888899888988763
No 28
>PF10646 Germane: Sporulation and spore germination; InterPro: IPR019606 The GerMN domain is a region of approximately 100 residues that is found, duplicated, in the Bacillus GerM protein and is implicated in both sporulation and spore germination. It is also found in lipoprotein LpqB. The domain is present in a number of different bacterial species both alone and in association with other domains such as Gmad1 and Gmad2. It is predicted to have a novel alpha-beta fold.
Probab=23.82 E-value=3.7e+02 Score=23.36 Aligned_cols=77 Identities=14% Similarity=0.275 Sum_probs=47.5
Q ss_pred HHHHhcCCCCCcchhhhhhhcCCccceeeEEEEee-CCeEEEEEEeeccccccchhHHHHHHHHHHHHHhhCCCCcEEEe
Q 007956 308 LKLFLENPVNFDPLSMVFNKSSRFARLQAIKCAIA-GKNLYLRFTCSTGDAMGMNMVSKGVQNVLDFLQAEFPDMDVIGI 386 (583)
Q Consensus 308 ~~~wl~~p~n~~~L~~van~tsR~g~L~~I~~~i~-G~~l~lrf~~~TgDAMG~NMVn~~~e~v~~~l~~~~~~~~~i~I 386 (583)
+..++..|...+.-. ....-..+.++. .+.+. |+.++|+|.-+-.+.+|.-.-.-+.++++.-+.++|++.+-+.|
T Consensus 30 v~~L~~gp~~~~~~~-~~~~~p~~~~l~--~v~~~~~~~~~Vd~s~~~~~~~~~~~~~~~~~~i~~Tl~~~~~~v~~V~i 106 (117)
T PF10646_consen 30 VNALLKGPSDSEGPG-LRSALPPGTKLN--SVTVDDGNTLTVDFSSEFLNFLGSSQEALLLAQIVNTLTEQFPGVKKVQI 106 (117)
T ss_pred HHHHHhCCCccccce-eeecCCCcccee--eEEECCCCEEEEECCHHHhhcCChHHHHHHHHHHHHHHHHhcCCccEEEE
Confidence 555666653332111 222224444554 34444 66999999776655577777777889999999878887665444
Q ss_pred e
Q 007956 387 S 387 (583)
Q Consensus 387 s 387 (583)
.
T Consensus 107 ~ 107 (117)
T PF10646_consen 107 L 107 (117)
T ss_pred E
Confidence 3
No 29
>PF07074 TRAP-gamma: Translocon-associated protein, gamma subunit (TRAP-gamma); InterPro: IPR009779 This family consists of several eukaryotic translocon-associated protein, gamma subunit (TRAP-gamma) sequences. The translocation site (translocon), at which nascent polypeptides pass through the endoplasmic reticulum membrane, contains a component previously called 'signal sequence receptor' that is now renamed as 'translocon-associated protein' (TRAP). The TRAP complex is comprised of four membrane proteins alpha, beta, gamma and delta, which are present in a stoichiometric relation, and are genuine neighbours in intact microsomes. The gamma subunit is predicted to span the membrane four times [].; GO: 0006613 cotranslational protein targeting to membrane, 0005784 Sec61 translocon complex, 0030176 integral to endoplasmic reticulum membrane
Probab=23.75 E-value=50 Score=32.89 Aligned_cols=32 Identities=25% Similarity=0.541 Sum_probs=27.6
Q ss_pred cccCCCchHHHHhHHHHHHHHHHHHHHHHHHH
Q 007956 24 THAQLPLPLYIINALFFTLFFTVVYYLLSRWR 55 (583)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (583)
...+.-+.+..+|++|.++..-.++|+|++|-
T Consensus 117 d~Ea~~~SifynNalFl~l~i~~SF~~lk~~~ 148 (170)
T PF07074_consen 117 DYEATTFSIFYNNALFLALVIVFSFYLLKNFS 148 (170)
T ss_pred hhhheeeehhhhchHHHHHHHHHHHHHHccCC
Confidence 34677888999999999999999999998774
No 30
>COG5548 Small integral membrane protein [Function unknown]
Probab=22.73 E-value=1.2e+02 Score=27.98 Aligned_cols=48 Identities=31% Similarity=0.406 Sum_probs=34.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHhhhhcCCCccccchHHHHHHHHHHHHHHHHHhhcCcccccc
Q 007956 33 YIINALFFTLFFTVVYYLLSRWREKIRNSTPLHVVTLSEMVAIVAFVASCIYLLGFFGIDFVQS 96 (583)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (583)
.|-.++||.+.|.++-||++|=|+. --+.++.+|.. ||+||++-|+-|
T Consensus 30 SL~sG~~~G~~~~~A~yL~~~g~~~---------------Gl~~A~~~s~~-Ll~~~~~R~~~s 77 (105)
T COG5548 30 SLLSGVFSGLLLFVAAYLQLQGQTW---------------GLILATVVSAA-LLVFFALRLVRS 77 (105)
T ss_pred hhHHHHHHhHHHHHHHHHHHcCccc---------------CeehHHHHHHH-HHHhcchhcccc
Confidence 3567888988888888888875432 12345555543 789999999876
No 31
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=22.71 E-value=3.6e+02 Score=30.79 Aligned_cols=123 Identities=17% Similarity=0.290 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCccccchHHHHHHHHHHHHHHHHHhhcCccccccccCCCCC---ccccccccccccc
Q 007956 40 FTLFFTVVYYLLSRWREKIRNSTPLHVVTLSEMVAIVAFVASCIYLLGFFGIDFVQSILRPSAD---VWASEDLEEEDSH 116 (583)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 116 (583)
..=|-=.+-|...|--..-|.+-|.||==.. ++++.|.=| |.+++..|. +|..+ ..
T Consensus 160 vke~~daa~FY~NrvLkEyk~~D~~hveWvK------a~l~l~~eL---------~~YVk~hhtTGl~W~~~-----g~- 218 (480)
T KOG2675|consen 160 VKEFKDAAQFYTNRVLKEYKEKDPRHVEWVK------AYLALFLEL---------QAYVKEHHTTGLVWNKD-----GG- 218 (480)
T ss_pred HHHHHHHHHHHHHHHHHHhccCChhHHHHHH------HHHHHHHHH---------HHHHHHhccccceecCC-----CC-
Confidence 3445555666677777778889999973322 233333222 334433333 68644 11
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCcCCCCCHHHHHHHhhcCCCCCCCcchhc
Q 007956 117 VIIKDDSRNLPCGQALDCSHVMTLPQPQPQPQPLPSLIIDHDPNTLTFTTEEDEEMIKSVVDGTTPSYSLESKL 190 (583)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~~v~~g~~~~~~lE~~l 190 (583)
.-.|....||.++-+..|||| +|+||+.+.++ +-.+.....-.-+..-+...+.+|+---..|-+.-
T Consensus 219 --~~~~~sa~~~~~s~~g~PPPP--PP~PPp~~~~~---~~~~~~~~~~k~~~~AlFaqlNqGe~iTsgLkkVt 285 (480)
T KOG2675|consen 219 --AAPDASASPKAASAPGAPPPP--PPAPPPAPFFA---DSNPPSSDANKGGRGALFAQLNQGEGITSGLKKVT 285 (480)
T ss_pred --cccccccCcCcccCCCCCCCC--CCCCCCccccc---ccCCCCcccccccHHHHHHHHhccchhhhhhhhCC
Confidence 012233356654433333322 12222222111 11111111222356679999999976555554433
No 32
>PF06129 Chordopox_G3: Chordopoxvirus G3 protein; InterPro: IPR010367 This family consists of several poxvirus specific G3 proteins. The function of this family is unknown.
Probab=21.49 E-value=75 Score=29.61 Aligned_cols=21 Identities=24% Similarity=0.735 Sum_probs=17.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHH
Q 007956 33 YIINALFFTLFFTVVYYLLSR 53 (583)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~ 53 (583)
++.|-+||.+|...+||+..-
T Consensus 2 ~ll~l~ffi~Fl~~~Y~~~y~ 22 (109)
T PF06129_consen 2 WLLYLIFFILFLVLCYFFNYY 22 (109)
T ss_pred cHHHHHHHHHHHHHHHHHhhc
Confidence 567888999999998988754
No 33
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=21.35 E-value=89 Score=28.95 Aligned_cols=21 Identities=33% Similarity=0.393 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 007956 37 ALFFTLFFTVVYYLLSRWREK 57 (583)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~ 57 (583)
.++|.++|.++||++.|=+.|
T Consensus 7 ll~lv~i~~i~yF~~iRPQkK 27 (109)
T PRK05886 7 FLPFLLIMGGFMYFASRRQRK 27 (109)
T ss_pred HHHHHHHHHHHHHHHccHHHH
Confidence 356778899999999776544
No 34
>PRK14066 exodeoxyribonuclease VII small subunit; Provisional
Probab=21.20 E-value=1.3e+02 Score=26.04 Aligned_cols=36 Identities=17% Similarity=0.219 Sum_probs=28.3
Q ss_pred CHHHHHHHhhcCCCCCCCcchhcccHHHHHHHHHHHHHH
Q 007956 168 EDEEMIKSVVDGTTPSYSLESKLGDCRRAAAIRREALQR 206 (583)
Q Consensus 168 ~~~ei~~~v~~g~~~~~~lE~~l~d~~ra~~iRR~~l~~ 206 (583)
.-++||+.+.+|.+| ||..+.-|++++.+-+..-++
T Consensus 12 ~LE~IV~~LE~g~l~---Leesl~lyeeG~~L~k~C~~~ 47 (75)
T PRK14066 12 KLEEVVKKLEGGELS---LDDSLKAFEEGVKHAAFCSKK 47 (75)
T ss_pred HHHHHHHHHHCCCCC---HHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999987 788888889988775544433
No 35
>TIGR03063 srtB_target sortase B cell surface sorting signal. Two different classes of sorting signal, both analogous to the sortase A signal LPXTG, may be recognized by the sortase SrtB. These are given as NXZTN and NPKXZ. Proteins sorted by this class of sortase are less common than the sortase A and LPXTG system. This model describes a number of cell surface protein C-terminal regions from Gram-positive bacteria that appear to be sortase B (SrtB) sorting signals.
Probab=20.81 E-value=84 Score=22.99 Aligned_cols=25 Identities=20% Similarity=0.412 Sum_probs=15.4
Q ss_pred hcccCCCchHHHHhHHHHHHHHHHHHHHHHH
Q 007956 23 ETHAQLPLPLYIINALFFTLFFTVVYYLLSR 53 (583)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 53 (583)
|.+|.-|+=+ |.++|.....||++|
T Consensus 3 kT~D~a~i~l------y~~l~~~s~~~Li~k 27 (29)
T TIGR03063 3 KTGDSAQIGL------YAVLFLGSGLFLIRK 27 (29)
T ss_pred CCccchhHHH------HHHHHHHHHHHHhhc
Confidence 6677766644 445666666777755
No 36
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=20.27 E-value=79 Score=27.68 Aligned_cols=22 Identities=27% Similarity=0.557 Sum_probs=16.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHH
Q 007956 34 IINALFFTLFFTVVYYLLSRWR 55 (583)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~ 55 (583)
++..+++.++|.+.||++.|=.
T Consensus 3 ~~~l~~~vv~~~i~yf~~~rpq 24 (84)
T TIGR00739 3 LTTLLPLVLIFLIFYFLIIRPQ 24 (84)
T ss_pred HHHHHHHHHHHHHHHHheechH
Confidence 3456788899999999986543
No 37
>PF07045 DUF1330: Protein of unknown function (DUF1330); InterPro: IPR010753 This family consists of several hypothetical bacterial proteins of around 90 residues in length. The function of this family is unknown.; PDB: 2FIU_B 3HHL_A 3DCA_D 3LO3_I.
Probab=20.06 E-value=36 Score=27.74 Aligned_cols=42 Identities=19% Similarity=0.263 Sum_probs=22.6
Q ss_pred hHHHHHhhCCCeEEEEcCCceEEceEEEeCCHHHHHHHHHHhcCC
Q 007956 271 RGCKAIHLSGGATSVLLKDGMTRAPVVRFGSAKRAAELKLFLENP 315 (583)
Q Consensus 271 RGaKai~~sGG~~t~v~~d~MtRapV~~f~~~~~A~~~~~wl~~p 315 (583)
.|.|++...+...+.--...-.+.-++.|+|.+.| +.|.++|
T Consensus 18 ~GG~~l~~~~~~~~leG~~~~~~~viieFPs~~aa---~~~~~sp 59 (65)
T PF07045_consen 18 YGGRVLARGGEPEVLEGDWDPDRVVIIEFPSMEAA---KAWYNSP 59 (65)
T ss_dssp TT-EEEEECEEEEEEEST-SSSEEEEEEESSHHHH---HHHHCSH
T ss_pred cCCEEEEECCceeEEecCCCCCeEEEEECCCHHHH---HHHHCCH
Confidence 44454444232322222244456678999996655 5688775
Done!