Query 007956
Match_columns 583
No_of_seqs 286 out of 712
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 14:38:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007956.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007956hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2r4f_A 3-hydroxy-3-methylgluta 100.0 1E-142 5E-147 1129.9 35.2 411 166-576 27-440 (441)
2 1r31_A 3-hydroxy-3-methylgluta 100.0 4E-115 2E-119 919.5 19.2 353 194-579 12-392 (428)
3 3qae_A 3-hydroxy-3-methylgluta 100.0 1E-111 4E-116 897.9 17.3 357 190-579 39-423 (458)
4 3byp_A CZRB protein; membrane 55.0 63 0.0021 26.1 8.5 68 320-387 14-84 (94)
5 2zzt_A Putative uncharacterize 48.5 57 0.002 27.6 7.5 69 319-387 13-83 (107)
6 3h90_A Ferrous-iron efflux pum 41.6 43 0.0015 32.8 6.4 64 320-383 210-273 (283)
7 2rdd_B UPF0092 membrane protei 39.5 21 0.00071 25.7 2.8 23 35-57 4-26 (37)
8 1zbp_A Hypothetical protein VP 26.0 25 0.00086 35.7 1.8 57 190-261 113-173 (273)
9 3j1z_P YIIP, cation efflux fam 22.3 53 0.0018 32.8 3.3 64 320-383 219-282 (306)
10 1v54_C Cytochrome C oxidase po 19.3 1.3E+02 0.0043 29.9 5.3 22 45-66 49-72 (261)
No 1
>2r4f_A 3-hydroxy-3-methylglutaryl-coenzyme A reductase; oxidoreductase, cholesterol, biocynthesis, HMG-COA, NADPH, statin, alternative splicing; HET: RIE; 1.70A {Homo sapiens} PDB: 2q1l_A* 2q6c_A* 2q6b_A* 3bgl_A* 3cct_A* 3ccw_A* 3ccz_A* 3cd0_A* 3cd5_A* 3cd7_A* 3cda_A* 3cdb_A* 1dqa_A* 1dq9_A* 1dq8_A* 1hw8_A* 1hw9_A* 1hwi_A* 1hwj_A* 1hwk_A* ...
Probab=100.00 E-value=1.5e-142 Score=1129.92 Aligned_cols=411 Identities=58% Similarity=0.958 Sum_probs=390.3
Q ss_pred CCCHHHHHHHhhcCCCCCCCcchhcccHHHHHHHHHHHHHHH--hCCCCCCCCCCCCCcccccccccccceEEeeeceee
Q 007956 166 TEEDEEMIKSVVDGTTPSYSLESKLGDCRRAAAIRREALQRS--TGKSLHGLPLEGFDYGSILGQCCEMPVGYVQIPVGI 243 (583)
Q Consensus 166 ~~~~~ei~~~v~~g~~~~~~lE~~l~d~~ra~~iRR~~l~~~--tg~sl~~L~~~~~D~~~i~g~~iEN~IG~v~IPvGV 243 (583)
..+|+||++++.+|++|+|+||+.++|++||+.+||++|++. ++.++++|+.+++||++++++||||+|||+|||+||
T Consensus 27 ~~~~~e~~~~~~~~~~~~~~le~~~~~~~~a~~~Rr~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~iEN~IG~~~lPvGv 106 (441)
T 2r4f_A 27 FLSDAEIIQLVNAKHIPAYKLETLIETHERGVSIRRQLLSKKLSEPSSLQYLPYRDYNYSLVMGACCENVIGYMPIPVGV 106 (441)
T ss_dssp SSCHHHHHHHHHTTSSCGGGHHHHSSSHHHHHHHHHHHHHHHSSSTTGGGGSCCTTCCGGGTBTTTBSSEEEEEEEEEEE
T ss_pred cCCHHHHHHHhhcCCCCCccchhhccChHHHHHHHHHHHHhhhCCChhHHhccccCCChHHHhccccccceeeeecceee
Confidence 458999999999999999999999999999999999999999 778899999999999999999999999999999999
Q ss_pred ecCeEEcCeEEeeeccccchhHHHHhhhHHHHHhhCCCeEEEEcCCceEEceEEEeCCHHHHHHHHHHhcCCCCCcchhh
Q 007956 244 AGPLLLDGREYSVPMATTEGCLVASANRGCKAIHLSGGATSVLLKDGMTRAPVVRFGSAKRAAELKLFLENPVNFDPLSM 323 (583)
Q Consensus 244 AGPL~InG~ey~VPMATtEgsLVAS~nRGaKai~~sGG~~t~v~~d~MtRapV~~f~~~~~A~~~~~wl~~p~n~~~L~~ 323 (583)
||||+|||++|+|||||||||||||+|||||+|+.+|||++++++|+|||+|||.|+++.+|.+++.|+++|+||++|++
T Consensus 107 Agpl~InG~~y~VPMATeE~slVAS~srGaK~i~~~GG~~t~v~~~~MtR~pv~~f~~~~~a~~~~~~i~~~~~~~~l~~ 186 (441)
T 2r4f_A 107 AGPLCLDEKEFQVPMATTEGCLVASTNRGCRAIGLGGGASSRVLADGMTRGPVVRLPRACDSAEVKAWLETSEGFAVIKE 186 (441)
T ss_dssp EEEEEETTEEEEEEEECCCTTHHHHHHHHHHHHHHTTCBEEEEEEEEEEECCEEECSSHHHHHHHHHHHHSHHHHHHHHH
T ss_pred eccEEEcCeEEEeeccccchhHHHHHhHHHHHHHhCCCEEEEECCCcEEEEEEEEECcHhhHHHHHHHHhChhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998889999999
Q ss_pred hhhhcCCccceeeEEEEeeCCeEEEEEEeeccccccchhHHHHHHHHHHHHHhhCCCCcEEEeecCCccCcccceecccc
Q 007956 324 VFNKSSRFARLQAIKCAIAGKNLYLRFTCSTGDAMGMNMVSKGVQNVLDFLQAEFPDMDVIGISGNFCSDKKPAAVNWIE 403 (583)
Q Consensus 324 van~tsR~g~L~~I~~~i~G~~l~lrf~~~TgDAMG~NMVn~~~e~v~~~l~~~~~~~~~i~IsgN~ctDKK~sA~n~I~ 403 (583)
+++++||||||++|++++.|++||+||.|+||||||||||||++|++++||+++||++.+++||||||+||||+|+|||+
T Consensus 187 ~~~stsr~g~l~~i~~~~~g~~l~lrf~~~TgDAMG~NMvn~~~E~v~~~l~~~~~~~~~~sIsgN~~tdkk~~A~n~i~ 266 (441)
T 2r4f_A 187 AFDSTSRFARLQKLHTSIAGRNLYIRFQSRSGDAMGMNMISKGTEKALSKLHEYFPEMQILAVSGNYCTDKKPAAINWIE 266 (441)
T ss_dssp HHHTTCSSCEECCCEEEEETTEEEEEEEEECTTBCCHHHHHHHHHHHHHHHHHHCTTCEEEESCCSCSCCSSCCHHHHHH
T ss_pred HhhhcccccccceEEEEeeCCEEEEEEEEecchhhcchhHHHHHHHHHHHHHhhCCCCeEEEEecCCcccceeeEEeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccEEEeeeechHHHHHHHHccCHHHHHhhhhhhhhhHhhhhhccccCCCCcchhHHHHHHHhCCCcccccccccceee
Q 007956 404 GRGKSVVCEAIIKGDVVRKVLKTNVDALVELNMLKNLTGSAMAGALGGFNAHASNIVTAVYIATGQDPAQNVESSHCITM 483 (583)
Q Consensus 404 gRGksVvaea~i~~eVv~kiLkts~~al~eln~~knltGsa~aGs~gG~NkhiaNgIaAvfIATGQD~A~~VESS~~iT~ 483 (583)
||||+|+||+++|++|++++++|++++++|+|..||++|||+||++||||||+||||+||||||||||||+||||+|+|.
T Consensus 267 gRGk~V~ae~~i~~~vv~~vl~ts~~a~vd~~~aknl~gsa~ag~~gt~Nkh~aNgI~Av~lATGqD~a~~vEss~~~t~ 346 (441)
T 2r4f_A 267 GRGKSVVCEAVIPAKVVREVLKTTTEAMIEVNINKNLVGSAMAGSIGGYNAHAANIVTAIYIACGQDAAQNVGSSNCITL 346 (441)
T ss_dssp CCEEEEEEEEEECHHHHHHTSSSCHHHHHHHHHHHHTHHHHHTTCSSEESSSHHHHHHHHHHHTTCCGGGHHHHTCEEEE
T ss_pred CCceEEEEEEecHHHHHHHHHCcCHHHHHHHHHHhhhhHHHhhccCCcCCCChHHHhHHHhhhcCCcHHHHHhhccceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEec-CCCcEEEEEEcCCceeEeecCcccchhHHHHHHHcCCCCCCCCCCCccHHHHHHHHHHHHHhhHHHHHHHhccc
Q 007956 484 MEAIN-DGKDLHVSVTMPSIEVGTVGGGTQLASQSACLNLLGVKGANKESPGANSRLLATIVAGSVLAGELSLMSALAAG 562 (583)
Q Consensus 484 ~e~~~-~g~dL~~SvtLPsL~VGTVGGGT~L~~q~~~L~lLGv~Ga~~~~pG~nAr~LAeIIAA~vLAgeLSll~ALaa~ 562 (583)
||.++ +++|||+|||||||+||||||||+||+|++||+||||+|+++++||.||++||+||||+|||||||||+||+++
T Consensus 347 le~~~~~~~dL~~svtlPsL~VGTVGGgT~lp~q~~~L~iLG~~g~~~~~pg~nA~~LA~IiAa~~LAgeLSal~ALat~ 426 (441)
T 2r4f_A 347 MEASGPTNEDLYISCTMPSIEIGTVGGGTNLLPQQACLQMLGVQGACKDNPGENARQLARIVCGTVMAGELSLMAALAAG 426 (441)
T ss_dssp EEEESTTSCEEEEEEEEEEECCCSBSGGGGSHHHHHHHHHTTCCSCCSSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred eeeeccCCCeEEEEEECCCceEEeecCcCCCHHHHHHHHHhCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99876 55699999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhccCCc
Q 007956 563 QLVKSHMKYNRSSK 576 (583)
Q Consensus 563 gi~kgHMkL~R~~~ 576 (583)
|||||||||||++.
T Consensus 427 ~i~~~HmkL~R~~~ 440 (441)
T 2r4f_A 427 HLVKSHMIHNRSKI 440 (441)
T ss_dssp --------------
T ss_pred cHHHHHHHhcCCCC
Confidence 99999999999763
No 2
>1r31_A 3-hydroxy-3-methylglutaryl-coenzyme A reductase; 4-electron oxido-reductase, oxidoreductase; HET: COA MEV; 2.10A {Pseudomonas mevalonii} SCOP: d.58.20.1 d.179.1.1 PDB: 1qay_A* 1qax_A* 1r7i_A 1t02_A*
Probab=100.00 E-value=4.4e-115 Score=919.46 Aligned_cols=353 Identities=23% Similarity=0.250 Sum_probs=323.8
Q ss_pred HHHHHHHHHHHHHHhC---CCCCCCCCCCCCcccccccccccceEEeeeceeeecCeEEcCeEEeeeccccchhHHHHhh
Q 007956 194 RRAAAIRREALQRSTG---KSLHGLPLEGFDYGSILGQCCEMPVGYVQIPVGIAGPLLLDGREYSVPMATTEGCLVASAN 270 (583)
Q Consensus 194 ~ra~~iRR~~l~~~tg---~sl~~L~~~~~D~~~i~g~~iEN~IG~v~IPvGVAGPL~InG~ey~VPMATtEgsLVAS~n 270 (583)
++++++||++|++.++ .++++|+.+.+||++++++||||+|||++||+||||||+|||++|+|||||||||||||+|
T Consensus 12 ~~s~~~Rr~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~iEN~IG~~~lP~GvAgpl~InG~~y~VPMATeE~slVAs~s 91 (428)
T 1r31_A 12 NLSPAARLDHIGQLLGLSHDDVSLLANAGALPMDIANGMIENVIGTFELPYAVASNFQINGRDVLVPLVVEEPSIVAAAS 91 (428)
T ss_dssp GSCHHHHHHHHHHHHTCCHHHHHHHHSSCCSCHHHHHHHSSSEEEEEEEEEEEECSCEETTEECCEEEECSCTTHHHHHH
T ss_pred cccHHHHHHHHHHhcCCCHHHHHhccccCCChHHHHhcccccccceeecceeEecCEEECCeEEEeeeeeccccHHHHhh
Confidence 4588999999999998 5678899999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhCCCeEEEEcCCceEEceEEEeCCHHHHHHHHHHhcCCCCCcchhhhhhhcC-----CccceeeEEEEeeCC-
Q 007956 271 RGCKAIHLSGGATSVLLKDGMTRAPVVRFGSAKRAAELKLFLENPVNFDPLSMVFNKSS-----RFARLQAIKCAIAGK- 344 (583)
Q Consensus 271 RGaKai~~sGG~~t~v~~d~MtRapV~~f~~~~~A~~~~~wl~~p~n~~~L~~van~ts-----R~g~L~~I~~~i~G~- 344 (583)
||||+++.+|||++++++|+|||+|+|.+ +.++.+++.|+++ |+++|+++||+++ |||||++|++++.|+
T Consensus 92 rgaK~i~~~GG~~t~~~~~~M~r~~~~~~--~~~a~~~~~~i~~--~~~~l~~~a~~ts~~~~kr~ggl~~i~~~~~g~~ 167 (428)
T 1r31_A 92 YMAKLARANGGFTTSSSAPLMHAQVQIVG--IQDPLNARLSLLR--RKDEIIELANRKDQLLNSLGGGCRDIEVHTFADT 167 (428)
T ss_dssp HHHHHHHTTTCBEEEECCCEEEEEEEEES--CSCHHHHHHHHHH--THHHHHHHHHTTCHHHHHTTCEEEEEEEEEECCC
T ss_pred HHHHHHHhCCCEEEEECCCcEEeeeEEcc--ccCHHHHHHHHHH--HHHHHHHHHHhhCHHHHhCCcccceEEEEecCCc
Confidence 99999999999999999999999998876 6788899999997 9999999999998 999999999999987
Q ss_pred ----eEEEEEEeeccccccchhHHHHHHHHHHHHHhhCCCCcEEEeecCCccCcccceeccccCCccEEEeeeechHHHH
Q 007956 345 ----NLYLRFTCSTGDAMGMNMVSKGVQNVLDFLQAEFPDMDVIGISGNFCSDKKPAAVNWIEGRGKSVVCEAIIKGDVV 420 (583)
Q Consensus 345 ----~l~lrf~~~TgDAMG~NMVn~~~e~v~~~l~~~~~~~~~i~IsgN~ctDKK~sA~n~I~gRGksVvaea~i~~eVv 420 (583)
++|+||.|||||||||||||+++|++++||++.||++.+++||||||+| |+|+||+.||.+++
T Consensus 168 ~~g~~l~l~~~~~tgDAMGaNmvn~~~E~v~~~l~~~~~~~~~~~I~sN~~td-------------k~V~Ae~~ip~~~l 234 (428)
T 1r31_A 168 PRGPMLVAHLIVDVRDAMGANTVNTMAEAVAPLMEAITGGQVRLRILSNLADL-------------RLARAQVRITPQQL 234 (428)
T ss_dssp TTCCEEEEEEEEECTTBCCHHHHHHHHHHHHHHHHHHHCSEEEEEEECSCCTT-------------SEEEEEEEECHHHH
T ss_pred CcCcEEEEEEEEeccccccchHHHHHHHHHHHHHHHhCCCCEEEEEcCccCCC-------------ceEEEEEEEcHHHH
Confidence 9999999999999999999999999999999999999999999999999 46788999999999
Q ss_pred HHHHccCHHHHHhhhhhhhhhHhhhhhcc----ccCCCCcchhHHHHHHHhCCCcccccccc----------cceeeeEE
Q 007956 421 RKVLKTNVDALVELNMLKNLTGSAMAGAL----GGFNAHASNIVTAVYIATGQDPAQNVESS----------HCITMMEA 486 (583)
Q Consensus 421 ~kiLkts~~al~eln~~knltGsa~aGs~----gG~NkhiaNgIaAvfIATGQD~A~~VESS----------~~iT~~e~ 486 (583)
+++ +++++++++ |++.||++||+. +|||||+||||+|||||||||||+++||| +|||+||.
T Consensus 235 ~~~-~~~~~~~~~----k~~~~s~~A~~~~~RA~t~Nk~~~Ngi~Av~lATGqD~ravea~sHayA~~~g~y~~lt~~e~ 309 (428)
T 1r31_A 235 ETA-EFSGEAVIE----GILDAYAFAAVDPYRAATHNKGIMNGIDPLIVATGNDWRAVEAGAHAYACRSGHYGSLTTWEK 309 (428)
T ss_dssp CCS-SSCHHHHHH----HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTTSSCCCSEEEEE
T ss_pred hcC-CCCHHHHHH----HHHHHHHHhcchHHhhccCCCCHHHHHHHHHHHcCCCHHHHHhhhhHhHhhcCCcccceEEEE
Confidence 999 999999997 899999999997 88999999999999999999999888888 78999998
Q ss_pred ecCCCcEEEEEEcCCceeEeecCcccc-hhHHHHHHHcCCCCCCCCCCCccHHHHHHHHHHHHHhhHHHHHHHhccchHH
Q 007956 487 INDGKDLHVSVTMPSIEVGTVGGGTQL-ASQSACLNLLGVKGANKESPGANSRLLATIVAGSVLAGELSLMSALAAGQLV 565 (583)
Q Consensus 487 ~~~g~dL~~SvtLPsL~VGTVGGGT~L-~~q~~~L~lLGv~Ga~~~~pG~nAr~LAeIIAA~vLAgeLSll~ALaa~gi~ 565 (583)
.++| |||+||||| |+||||||||+| |+|++||+||||+ ||++||+||||+|||||||+|+||+++|||
T Consensus 310 ~~~g-~L~~svtlP-l~VGtVGGgt~l~p~~~~~L~iLg~~---------~A~~LA~IiAa~~LA~nlsal~ALat~gi~ 378 (428)
T 1r31_A 310 DNNG-HLVGTLEMP-MPVGLVGGATKTHPLAQLSLRILGVK---------TAQALAEIAVAVGLAQNLGAMRALATEGIQ 378 (428)
T ss_dssp CTTS-CEEEEEEEE-CCCCSBSTHHHHCHHHHHHHHHHTCS---------SHHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred cCCC-eEEEEEEee-eeEEEecCccccCHHHHHHHHHhCCc---------CHHHHHHHHHHHHHHHHHHHHHHHhhCcHH
Confidence 7554 999999999 999999999999 8999999999998 799999999999999999999999999999
Q ss_pred HHHHhhccCCcccc
Q 007956 566 KSHMKYNRSSKDVT 579 (583)
Q Consensus 566 kgHMkL~R~~~~~~ 579 (583)
||||||||++.+++
T Consensus 379 ~gHmkL~r~~~a~~ 392 (428)
T 1r31_A 379 RGHMALHARNIAVV 392 (428)
T ss_dssp --------------
T ss_pred HHHHHHhhhchhhh
Confidence 99999999998765
No 3
>3qae_A 3-hydroxy-3-methylglutaryl-coenzyme A reductase; 4-electron oxido-reductase, oxidoreductase; HET: CIT; 2.30A {Streptococcus pneumoniae} PDB: 3qau_A
Probab=100.00 E-value=1.1e-111 Score=897.87 Aligned_cols=357 Identities=23% Similarity=0.252 Sum_probs=312.0
Q ss_pred cccHHH-HHHHHHHHHHHHhCCCC---CCCCC-CCCCcccccccccccceEEeeeceeeecCeEEcCeEEeeeccccchh
Q 007956 190 LGDCRR-AAAIRREALQRSTGKSL---HGLPL-EGFDYGSILGQCCEMPVGYVQIPVGIAGPLLLDGREYSVPMATTEGC 264 (583)
Q Consensus 190 l~d~~r-a~~iRR~~l~~~tg~sl---~~L~~-~~~D~~~i~g~~iEN~IG~v~IPvGVAGPL~InG~ey~VPMATtEgs 264 (583)
+.+|.+ ..+.|+++|++.++.+. +.|.. ..+| .+++++||||+|||++||+||||||+|||++|+|||||||||
T Consensus 39 ~~~F~k~s~~eR~~~l~~~~~l~~~~~~~l~~~~~l~-~~~~~~~iEN~IG~~~lPvGvAgpl~InG~~y~VPMATeE~s 117 (458)
T 3qae_A 39 WNGFSKKSYQERLELLKAQALLSPERQASLEKDEQMS-VTVADQLSENVVGTFSLPYSLVPEVLVNGQEYTVPYVTEEPS 117 (458)
T ss_dssp CTTTTTSCHHHHHHHHHHHTCSCHHHHHHHHTTCCCC-HHHHHHHSSSCCCCCCCCCEEEEEEEETTEEEEEEECCCSTT
T ss_pred CcCccccCHHHHHHHHHHhcCCCHHHHHHHhccCCCC-HHHHhcccceeeeeeecceeeecCEEECCEEEEeeceecccc
Confidence 334444 77899999999988542 23332 3455 568899999999999999999999999999999999999999
Q ss_pred HHHHhhhHHHHHhhCCCeEEEEcCCceEEceEEEeCCHHHHHHHHHHhcCCCCCcchhhhhhh-----cCCccceeeEEE
Q 007956 265 LVASANRGCKAIHLSGGATSVLLKDGMTRAPVVRFGSAKRAAELKLFLENPVNFDPLSMVFNK-----SSRFARLQAIKC 339 (583)
Q Consensus 265 LVAS~nRGaKai~~sGG~~t~v~~d~MtRapV~~f~~~~~A~~~~~wl~~p~n~~~L~~van~-----tsR~g~L~~I~~ 339 (583)
||||+|||||+|+.+|||++++++|+|||+|+ |+++.++.+++.|+++ ++++|++++|+ ++|||||++|++
T Consensus 118 lVASasrGaK~i~~~GG~~t~v~~~~Mtrqv~--f~~~~~a~~~~~~i~~--~~~~l~~~a~~~~~s~~~rgggl~~i~~ 193 (458)
T 3qae_A 118 VVAAASYASKIIKRAGGFTTQVHQRQMIGQVA--LYQVANPKLAQEKIAS--KKAELLELANQAYPSIVKRGGGARDLHV 193 (458)
T ss_dssp HHHHHHHHHHHHHHTTCBEEEECCCCEEEEEE--EECCSCHHHHHHHHHH--THHHHHHHHHHHCHHHHTTTCEEEEEEE
T ss_pred HHHHhhHHHHHHHhcCCEEEEEcCCceEeeeE--ecchhhHHHHHHHHHH--HHHHHHHHHHhhCchhhhcccceeEEEE
Confidence 99999999999999999999999999999866 5788899999999997 99999999996 378999999999
Q ss_pred Ee---eCCeEEEEEEeeccccccchhHHHHHHHHHHHHHhhCCCCcEEEeecCCccCcccceeccccCCccEEEeeeech
Q 007956 340 AI---AGKNLYLRFTCSTGDAMGMNMVSKGVQNVLDFLQAEFPDMDVIGISGNFCSDKKPAAVNWIEGRGKSVVCEAIIK 416 (583)
Q Consensus 340 ~i---~G~~l~lrf~~~TgDAMG~NMVn~~~e~v~~~l~~~~~~~~~i~IsgN~ctDKK~sA~n~I~gRGksVvaea~i~ 416 (583)
++ .|++||+||.||||||||||||||++|+++++|+++||++.+++||||||+||| |+||++||
T Consensus 194 ~~~~~~g~~l~lrf~~~TgDAMGaNMvn~~~E~v~~~l~~~~~~~~~~~I~sN~~tdk~-------------V~Ae~~ip 260 (458)
T 3qae_A 194 EQIKGEPDFLVVYIHVDTQEAMGANMLNTMLEALKPVLEELSQGQSLMGILSNYATDSL-------------VTASCRIA 260 (458)
T ss_dssp EEECSSSCEEEEEEEEECTTSCCHHHHHHHHHHHHHHHHHHHTSEEEEEEECSCCGGGE-------------EEEEEEEE
T ss_pred EEecCCCCEEEEEEEEeccccccchHHHHHHHHHHHHHHHhCCCceEEEEeCcCCCCce-------------EEEEEEEc
Confidence 98 799999999999999999999999999999999999999999999999999984 67899999
Q ss_pred HHHHHHHHccCHHHHHhhhhhhhhhHhhhhhccc----cCCCCcchhHHHHHHHhCCCccccccccc----------cee
Q 007956 417 GDVVRKVLKTNVDALVELNMLKNLTGSAMAGALG----GFNAHASNIVTAVYIATGQDPAQNVESSH----------CIT 482 (583)
Q Consensus 417 ~eVv~kiLkts~~al~eln~~knltGsa~aGs~g----G~NkhiaNgIaAvfIATGQD~A~~VESS~----------~iT 482 (583)
.++++++ ++++++++| |++.||++||+.+ |||||+||||+|||||||||||+++|||| |||
T Consensus 261 ~~~l~~~-~~~~~~~ae----k~~~~s~~A~~~~yRA~t~NkgiaNgI~Av~lATGqD~aaveesshayAar~G~Y~~lT 335 (458)
T 3qae_A 261 FRYLSRQ-KDQGREIAE----KIALASQFAQADPYRAATHNKGIFNGIDAILIATGNDWRAIEAGAHAFASRDGRYQGLS 335 (458)
T ss_dssp HHHHCSS-TTHHHHHHH----HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTTTSSCCCSE
T ss_pred HHHHhhc-CCCHHHHHH----HHHHHHHHhccchhhhhhcchhhHhhhhHHHhhcCCchhHhHHHhhHHHhhcCCcccce
Confidence 9999998 999999987 8899999999987 89999999999999999999998888886 489
Q ss_pred eeEEecCCCcEEEEEEcCCceeEeecCcccc-hhHHHHHHHcCCCCCCCCCCCccHHHHHHHHHHHHHhhHHHHHHHhcc
Q 007956 483 MMEAINDGKDLHVSVTMPSIEVGTVGGGTQL-ASQSACLNLLGVKGANKESPGANSRLLATIVAGSVLAGELSLMSALAA 561 (583)
Q Consensus 483 ~~e~~~~g~dL~~SvtLPsL~VGTVGGGT~L-~~q~~~L~lLGv~Ga~~~~pG~nAr~LAeIIAA~vLAgeLSll~ALaa 561 (583)
+||.+++++|||+||||| |+||||||||+| |+|++||+||||+ ||++||+||||+|||||||||+||++
T Consensus 336 ~~e~~~~~g~L~~svtlP-L~VGTVGGgT~l~P~~~~~L~iLG~~---------nA~~LA~IiAa~gLAgelSal~ALat 405 (458)
T 3qae_A 336 CWTLDLEREELVGEMTLP-MPVATKGSSIGLNPRVALSHDLLGNP---------SARELAQIIVSIGLAQNFAALKALVS 405 (458)
T ss_dssp EEEEETTTTEEEEEEEEE-CCCCSCSHHHHHCHHHHHHHHHTTCC---------CHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred eEEEecCCCEEEEEEEec-ceeeeecCccccCHHHHHHHHHhCCc---------cHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999875667999999999 999999999999 8899999999997 79999999999999999999999999
Q ss_pred chHHHHHHhhccCCcccc
Q 007956 562 GQLVKSHMKYNRSSKDVT 579 (583)
Q Consensus 562 ~gi~kgHMkL~R~~~~~~ 579 (583)
+|||||||||||++.+++
T Consensus 406 ~giqkgHMkL~r~~la~~ 423 (458)
T 3qae_A 406 TGIQQGHMKLQAKSLALL 423 (458)
T ss_dssp C-----------------
T ss_pred CcHHHHHHHHhhhhhHhh
Confidence 999999999999998765
No 4
>3byp_A CZRB protein; membrane protein, zinc transporter, transport protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1 PDB: 3byr_A
Probab=55.00 E-value=63 Score=26.14 Aligned_cols=68 Identities=15% Similarity=0.265 Sum_probs=45.6
Q ss_pred chhhhhhhc--CCccceeeEEEEeeCCeEEEEEEeeccccccchhHHHHHHHHHHHHHhhCCCCcE-EEee
Q 007956 320 PLSMVFNKS--SRFARLQAIKCAIAGKNLYLRFTCSTGDAMGMNMVSKGVQNVLDFLQAEFPDMDV-IGIS 387 (583)
Q Consensus 320 ~L~~van~t--sR~g~L~~I~~~i~G~~l~lrf~~~TgDAMG~NMVn~~~e~v~~~l~~~~~~~~~-i~Is 387 (583)
.+++...+. ...-++.+++.+..|..+++.+++..-+.|-..-....++.+-+.|++.||...+ +-+.
T Consensus 14 ~I~~~l~~~~~~gV~~vh~l~~~~~g~~~~v~~hi~v~~~~~~~~~h~i~~~ie~~l~~~~~~~~vtIh~e 84 (94)
T 3byp_A 14 RIRAFLQERIRGRALEVHDLKTRRAGPRSFLEFHLVVRGDTPVEEAHRLCDELERALAQAFPGLQATIHVE 84 (94)
T ss_dssp HHHHHHHHHHTTTCSEEEEEEEEEETTEEEEEEEEEECTTCBHHHHHHHHHHHHHHHHHHSTTEEEEEEEE
T ss_pred HHHHHHHhcCCCCceeeeeEEEEEECCcEEEEEEEEECCCCcHHHHHHHHHHHHHHHHHHCCCCEEEEEeC
Confidence 444444444 5556788899998898888888887766554333345667777778788886543 4454
No 5
>2zzt_A Putative uncharacterized protein; cation diffusion facilitator (CDF), transporter, zinc, membrane protein, cytosolic domain; 2.84A {Thermotoga maritima}
Probab=48.52 E-value=57 Score=27.61 Aligned_cols=69 Identities=9% Similarity=0.166 Sum_probs=44.8
Q ss_pred cchhhhhhhcCCccceeeEEEEeeCCeEEEEEEeeccccccchhHHHHHHHHHHHHHhhCCCCcE--EEee
Q 007956 319 DPLSMVFNKSSRFARLQAIKCAIAGKNLYLRFTCSTGDAMGMNMVSKGVQNVLDFLQAEFPDMDV--IGIS 387 (583)
Q Consensus 319 ~~L~~van~tsR~g~L~~I~~~i~G~~l~lrf~~~TgDAMG~NMVn~~~e~v~~~l~~~~~~~~~--i~Is 387 (583)
+.|++..++....-++.++.++..|+.+++.+.+..-+.|-..-.-..++.+-..|++.||.... +-+.
T Consensus 13 ~~I~~~l~~~~gV~~vh~lr~r~~G~~~~v~~hI~v~~~~sv~eah~i~~~ie~~L~~~~~~i~~vtIhvE 83 (107)
T 2zzt_A 13 DDIFAVLERFPNVHNPHRVRIRRVGTKYFIEMDIEVDGKMSVKDAHELTVKIRKEMLKRRDDIEDVTIHVE 83 (107)
T ss_dssp HHHHHHHTTCSSCEEEEEEEEECSCC-CEEEEEEEECTTSCHHHHHHHHHHHHHHHHHHCTTCCEEEEEEE
T ss_pred HHHHHHHHcCCCccccEEEEEEEECCcEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCcEEEEEEe
Confidence 34555555555556777888888898888888887766654333445667777778888985532 4444
No 6
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=41.62 E-value=43 Score=32.77 Aligned_cols=64 Identities=11% Similarity=0.198 Sum_probs=44.9
Q ss_pred chhhhhhhcCCccceeeEEEEeeCCeEEEEEEeeccccccchhHHHHHHHHHHHHHhhCCCCcE
Q 007956 320 PLSMVFNKSSRFARLQAIKCAIAGKNLYLRFTCSTGDAMGMNMVSKGVQNVLDFLQAEFPDMDV 383 (583)
Q Consensus 320 ~L~~van~tsR~g~L~~I~~~i~G~~l~lrf~~~TgDAMG~NMVn~~~e~v~~~l~~~~~~~~~ 383 (583)
++++..++....-++.+++.+..|+..++.+++..-+-|-..-.....+.+-+.|++.||..++
T Consensus 210 ~i~~~i~~~~~V~~v~~l~~~~~G~~~~v~~hv~v~~~~~~~~~~~i~~~i~~~l~~~~~~~~v 273 (283)
T 3h90_A 210 EIIDIVTSWPGVSGAHDLRTRQSGPTRFIQIHLEMEDSLPLVQAHMVADQVEQAILRRFPGSDV 273 (283)
T ss_dssp HHHHHHHHSSSCSEEEEEEEEEETTEEEEEEEEECCTTCBHHHHHHHHHHHHHHHHHHSTTCEE
T ss_pred HHHHHHhcCCCcccceeeEEEEECCcEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHCCCCeE
Confidence 4444444445556778889998999888888888777654444556677777888888887544
No 7
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=39.46 E-value=21 Score=25.68 Aligned_cols=23 Identities=22% Similarity=0.436 Sum_probs=17.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhh
Q 007956 35 INALFFTLFFTVVYYLLSRWREK 57 (583)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~ 57 (583)
+.-+.+.++|.+.||++.|=..|
T Consensus 4 ~~~l~~v~~~~ifYFl~iRPQ~K 26 (37)
T 2rdd_B 4 SLILMLVVFGLIFYFMILRPQQK 26 (37)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHH
Confidence 44567888999999999775433
No 8
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=25.97 E-value=25 Score=35.70 Aligned_cols=57 Identities=19% Similarity=0.230 Sum_probs=38.8
Q ss_pred cccHHHHHHHHHHHHHHHhCC--CCCCCCCC-CCCcccccccccccceEEeeeceeeecCeE-EcCeEEeeecccc
Q 007956 190 LGDCRRAAAIRREALQRSTGK--SLHGLPLE-GFDYGSILGQCCEMPVGYVQIPVGIAGPLL-LDGREYSVPMATT 261 (583)
Q Consensus 190 l~d~~ra~~iRR~~l~~~tg~--sl~~L~~~-~~D~~~i~g~~iEN~IG~v~IPvGVAGPL~-InG~ey~VPMATt 261 (583)
-++..+|.+.|.++++..--. .+++-+++ -.|.++.+|-.|| +. +||+.|+||++--
T Consensus 113 ~G~~~~A~~lr~~A~e~ap~~~G~~~~~~F~wi~D~D~RlGpv~E---------------~i~~~G~Y~WlPf~~I 173 (273)
T 1zbp_A 113 SQDYEQVSELALQIEELRQEKGFLANDTSFSDVRDIDDRLGGYIE---------------LFSTAGNYFLVPIASI 173 (273)
T ss_dssp HTCHHHHHHHHHHHHHHCCCCCEEETTEEESCEEESSTTTTTEEE---------------EECTTSCEEEEEGGGE
T ss_pred cCCHHHHHHHHHHHHhcCcccCCCcCCCCcchhhccccCCcceEE---------------EEEeCCeEEEeeHHHh
Confidence 368899999999998874221 12233333 2566778888888 44 6788899998753
No 9
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=22.34 E-value=53 Score=32.79 Aligned_cols=64 Identities=17% Similarity=0.323 Sum_probs=43.0
Q ss_pred chhhhhhhcCCccceeeEEEEeeCCeEEEEEEeeccccccchhHHHHHHHHHHHHHhhCCCCcE
Q 007956 320 PLSMVFNKSSRFARLQAIKCAIAGKNLYLRFTCSTGDAMGMNMVSKGVQNVLDFLQAEFPDMDV 383 (583)
Q Consensus 320 ~L~~van~tsR~g~L~~I~~~i~G~~l~lrf~~~TgDAMG~NMVn~~~e~v~~~l~~~~~~~~~ 383 (583)
++++..++...--++.+++++..|+.+++.+++..-+-|-..=.-..++.+-+.|++.||..++
T Consensus 219 ~I~~~i~~~~~V~~vh~l~~~~~G~~~~v~~hi~v~~~~sl~eah~i~~~ie~~l~~~~~~~~v 282 (306)
T 3j1z_P 219 RIKLIAKEDPRVLGLHDLRTRQAGKTVFIQFHLELDGNLSLNEAHSITDTTGLRVKAAFEDAEV 282 (306)
T ss_dssp HHHHHHHHSTTBCCCCCBCCEEETTEEEEEECCEECTTSBHHHHHHHHHHHHHHHHHHSTTCEE
T ss_pred HHHHHHhcCCCcceeeeEEEEEECCcEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCCeE
Confidence 3444444445555677888888999988888777766554333445667777788888886554
No 10
>1v54_C Cytochrome C oxidase polypeptide III; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.25.1.1 PDB: 1v55_C* 2dyr_C* 2eij_C* 2eik_C* 2eil_C* 2eim_C* 2ein_C* 2y69_C* 2ybb_N* 2zxw_C* 3abk_C* 3abl_C* 3abm_C* 3ag1_C* 3ag2_C* 3ag3_C* 3ag4_C* 3asn_C* 3aso_C* 2occ_C* ...
Probab=19.26 E-value=1.3e+02 Score=29.90 Aligned_cols=22 Identities=36% Similarity=0.578 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHhhhhcCC--Cccc
Q 007956 45 TVVYYLLSRWREKIRNST--PLHV 66 (583)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~--~~~~ 66 (583)
.+.+-++.-|||-+|.+| |+|-
T Consensus 49 ~~~~~~~~W~~dv~~e~~~~g~ht 72 (261)
T 1v54_C 49 TNMLTMYQWWRDVIRESTFQGHHT 72 (261)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred HHHHHHHHhccccccccccCCCCc
Confidence 344444556699999996 7774
Done!