Your job contains 1 sequence.
>007957
MQFPEMKSSVRFFHSPKQFLPLFNRTHFLSRQFPQFSRQFHSTTLRLCSAGESQTVPPVW
SIYGSSIANGVPESSGNVNSQSSSDFEKPQVKKKTNLGLGDLVGTRKKGKANRTNWVCSD
CGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRLLEVNKGMK
QLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEP
SPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIIDSIQTV
YLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLY
MEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLA
VAVIMDGSRSFLIEIQALCVSGSTVSRHVNGIQASRADMIISVLMKQAGLKLQENAIFLN
VVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAK
LGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVFTTP
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 007957
(583 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2177497 - symbol:AT5G50340 species:3702 "Arabi... 1689 7.7e-174 1
TIGR_CMR|GSU_0285 - symbol:GSU_0285 "DNA repair protein R... 752 1.1e-82 2
TIGR_CMR|BA_0081 - symbol:BA_0081 "DNA repair protein Rad... 818 1.5e-81 1
TIGR_CMR|DET_0058 - symbol:DET_0058 "DNA repair protein R... 737 1.9e-81 2
TIGR_CMR|ECH_0305 - symbol:ECH_0305 "DNA repair protein R... 695 1.8e-76 2
TIGR_CMR|SO_1226 - symbol:SO_1226 "DNA repair protein Rad... 756 5.7e-75 1
TIGR_CMR|CBU_1422 - symbol:CBU_1422 "DNA repair protein R... 708 2.3e-74 2
UNIPROTKB|Q9X8L5 - symbol:Q9X8L5 "DNA repair protein radA... 648 2.9e-74 2
TIGR_CMR|VC_2343 - symbol:VC_2343 "DNA repair protein Rad... 739 3.6e-73 1
TIGR_CMR|CHY_2347 - symbol:CHY_2347 "DNA repair protein R... 727 6.7e-72 1
UNIPROTKB|P24554 - symbol:radA "DNA recombination protein... 722 2.3e-71 1
UNIPROTKB|P65953 - symbol:radA "DNA repair protein RadA h... 699 6.3e-69 1
TIGR_CMR|CJE_1339 - symbol:CJE_1339 "DNA repair protein R... 665 6.8e-69 2
TIGR_CMR|SPO_2674 - symbol:SPO_2674 "DNA repair protein R... 668 1.2e-65 1
TIGR_CMR|CPS_1105 - symbol:CPS_1105 "putative DNA repair ... 555 1.1e-53 1
>TAIR|locus:2177497 [details] [associations]
symbol:AT5G50340 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003678 "DNA
helicase activity" evidence=IEA] [GO:0003684 "damaged DNA binding"
evidence=IEA] [GO:0004176 "ATP-dependent peptidase activity"
evidence=IEA] [GO:0004252 "serine-type endopeptidase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IBA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006508
"proteolysis" evidence=IEA] [GO:0009295 "nucleoid" evidence=IBA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR004504 PRINTS:PR01874 SMART:SM00382
GO:GO:0005524 GO:GO:0005737 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0003684 GO:GO:0006281 GO:GO:0017111 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009295
eggNOG:COG1066 HOGENOM:HOG000218329 PANTHER:PTHR32472
TIGRFAMs:TIGR00416 EMBL:AK226617 IPI:IPI00541634 RefSeq:NP_199845.3
UniGene:At.50521 ProteinModelPortal:Q0WVW9 SMR:Q0WVW9 STRING:Q0WVW9
PaxDb:Q0WVW9 PRIDE:Q0WVW9 EnsemblPlants:AT5G50340.1 GeneID:835101
KEGG:ath:AT5G50340 TAIR:At5g50340 InParanoid:Q0WVW9 OMA:ENAVRSW
PhylomeDB:Q0WVW9 ProtClustDB:CLSN2695956 Genevestigator:Q0WVW9
Uniprot:Q0WVW9
Length = 587
Score = 1689 (599.6 bits), Expect = 7.7e-174, P = 7.7e-174
Identities = 339/495 (68%), Positives = 400/495 (80%)
Query: 100 GDLVGTR-KKGKANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAG-ESD------E 151
G++V + KKGK+ +T WVC CG+++GQWWG CRAC VGTMKR+S G ES
Sbjct: 93 GEVVMNKSKKGKS-KTVWVCESCGHSEGQWWGSCRACHKVGTMKRFSEGSESSASGGGGN 151
Query: 152 GPVVQRT------WLPQKPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARXXXXXXX 205
G + T WLP++ VQP RL +V G+ Q WRI L GLFGNEVAR
Sbjct: 152 GTGLGFTEGKGLSWLPEQAT-VQPHRLTDVIHGITQQQWRISLPGLFGNEVARVLGGGLA 210
Query: 206 XXXXXXXXXDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIA 265
DPG+GKSTLLLQ+A+IIA+ +L EP+PV+Y+SGEESVEQIG+RADRM I
Sbjct: 211 PGSLILIGGDPGIGKSTLLLQIASIIAEGSELAEPAPVLYISGEESVEQIGSRADRMRIQ 270
Query: 266 TEELFLYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRF 325
TEEL+L+SS+D++DI+ K LSPRALIIDSIQTVYL+ V GSAGGL QVKECTS LLRF
Sbjct: 271 TEELYLFSSSDLQDILNKAHRLSPRALIIDSIQTVYLKDVTGSAGGLTQVKECTSTLLRF 330
Query: 326 AKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDEL 385
AKK+NIPV L GHVTK+GDIAGPRVLEHIVD VLY+EGE+ S+YRLLRSVKNRFGSTDEL
Sbjct: 331 AKKSNIPVFLVGHVTKAGDIAGPRVLEHIVDVVLYLEGEESSTYRLLRSVKNRFGSTDEL 390
Query: 386 GVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTV 445
GVFEM+ GL+ VSNPS I+LS+Q+ DS+ LAGLAVAV+MDGSRSFLIE+QALC GSTV
Sbjct: 391 GVFEMANSGLEVVSNPSGIYLSQQNPDSDVLAGLAVAVVMDGSRSFLIEVQALCSPGSTV 450
Query: 446 SRHVNGIQASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFL 505
SRHVNG+QASRADMII+VLMKQAGL++QEN IFLNV +G+AL+ETAGDLA+AAAICSSFL
Sbjct: 451 SRHVNGVQASRADMIIAVLMKQAGLRIQENGIFLNVANGMALSETAGDLAIAAAICSSFL 510
Query: 506 EFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQME 565
EFPIP+G+AFIGEIGLGGE+R V RMEKRVSTVAKLG+ KC+VPKS E+SL L +++E
Sbjct: 511 EFPIPHGVAFIGEIGLGGEVRTVPRMEKRVSTVAKLGFNKCVVPKSVEESLKALSLKEIE 570
Query: 566 FIGCKNLKEVINVVF 580
IGCKNLKE+IN VF
Sbjct: 571 IIGCKNLKELINAVF 585
>TIGR_CMR|GSU_0285 [details] [associations]
symbol:GSU_0285 "DNA repair protein RadA" species:243231
"Geobacter sulfurreducens PCA" [GO:0005524 "ATP binding"
evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS]
InterPro:IPR003593 InterPro:IPR004504 PRINTS:PR01874 SMART:SM00382
GO:GO:0005524 GO:GO:0046872 GO:GO:0003684 GO:GO:0006281
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 HOGENOM:HOG000218329 KO:K04485 OMA:SIQTLWS
ProtClustDB:PRK11823 PANTHER:PTHR32472 TIGRFAMs:TIGR00416
RefSeq:NP_951345.1 ProteinModelPortal:Q74GG1 DNASU:2687470
GeneID:2687470 KEGG:gsu:GSU0285 PATRIC:22023312
BioCyc:GSUL243231:GH27-335-MONOMER Uniprot:Q74GG1
Length = 450
Score = 752 (269.8 bits), Expect = 1.1e-82, Sum P(2) = 1.1e-82
Identities = 161/368 (43%), Positives = 230/368 (62%)
Query: 215 DPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSS 274
DPG+GKST+LLQ + D H PV+YVSGEES Q R +R+ I EL + +
Sbjct: 93 DPGIGKSTILLQ----VMD-HLARTAGPVLYVSGEESARQTKMRGERLGIGARELLVLAE 147
Query: 275 TDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVL 334
T +E I+ +V L+PRAL+IDSIQTV+ + + G + QV+EC L+ AK+ IP L
Sbjct: 148 TSLELILSQVTALAPRALVIDSIQTVFSANLESAPGSVSQVRECAGRLMELAKRNGIPTL 207
Query: 335 LAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLG 394
L GHVTK G +AGPRVLEH+VD VLY EG+ ++R+LR+VKNRFGST+E+GVFEM + G
Sbjct: 208 LVGHVTKDGSLAGPRVLEHMVDTVLYFEGDPGHAFRILRAVKNRFGSTNEIGVFEMKEGG 267
Query: 395 LQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGST-VSRHVN-GI 452
L V NPS++FL+E+ ++G AV ++GSR L+E+QAL S V R G+
Sbjct: 268 LSEVRNPSELFLAERPLG---VSGSAVVTTIEGSRPLLVELQALVTPSSLGVPRRTTLGV 324
Query: 453 QASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNG 512
+R ++++VL K+ GL L IFLN G L+E A DL + AA+ SS L+ I
Sbjct: 325 DHNRLALLVAVLDKKVGLHLSGQDIFLNAAGGARLSEPAIDLGMVAALASSHLDKIIDPH 384
Query: 513 IAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNL 572
+GE+GL GE+R +++ E RV AKLG+ + ++P + + + + M +G K+L
Sbjct: 385 TVIVGEVGLAGEVRAITQAETRVREAAKLGFTRAVIPAGSVRQVGDV--PGMNVVGVKSL 442
Query: 573 KEVINVVF 580
E + +F
Sbjct: 443 DEALEQLF 450
Score = 96 (38.9 bits), Expect = 1.1e-82, Sum P(2) = 1.1e-82
Identities = 29/114 (25%), Positives = 45/114 (39%)
Query: 114 TNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRLL 173
T + C CGY +W G C C + + G +G P +PV +
Sbjct: 5 TRYACQKCGYQSAKWLGKCPDCAAWNSFVEEVTGGGRKGAA-------SLPAATRPVPIC 57
Query: 174 EVNKGMKQLDWRIPLSGLFGNEVARXXXXXXXXXXXXXXXXDPGVGKSTLLLQM 227
+V + + R+ G+ +E R DPG+GKST+LLQ+
Sbjct: 58 DV---ASEAETRLSC-GI--SEFDRVLGGGLVSGSLVLIGGDPGIGKSTILLQV 105
>TIGR_CMR|BA_0081 [details] [associations]
symbol:BA_0081 "DNA repair protein RadA" species:198094
"Bacillus anthracis str. Ames" [GO:0005524 "ATP binding"
evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS] [GO:0008233
"peptidase activity" evidence=ISS] InterPro:IPR003593
InterPro:IPR004504 PRINTS:PR01874 SMART:SM00382 GO:GO:0005524
GO:GO:0046872 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003684 GO:GO:0006281 GO:GO:0017111
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 HOGENOM:HOG000218329 KO:K04485 OMA:SIQTLWS
ProtClustDB:PRK11823 PANTHER:PTHR32472 TIGRFAMs:TIGR00416
RefSeq:NP_842650.1 RefSeq:YP_016686.1 RefSeq:YP_026368.1
ProteinModelPortal:Q81VV8 DNASU:1086967
EnsemblBacteria:EBBACT00000010694 EnsemblBacteria:EBBACT00000017537
EnsemblBacteria:EBBACT00000022174 GeneID:1086967 GeneID:2814935
GeneID:2848767 KEGG:ban:BA_0081 KEGG:bar:GBAA_0081 KEGG:bat:BAS0082
BioCyc:BANT260799:GJAJ-93-MONOMER BioCyc:BANT261594:GJ7F-95-MONOMER
Uniprot:Q81VV8
Length = 458
Score = 818 (293.0 bits), Expect = 1.5e-81, P = 1.5e-81
Identities = 196/473 (41%), Positives = 276/473 (58%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQ----KPEEVQ 168
+T + C +CGY ++ G C C T+ E E PVV L + E +
Sbjct: 5 KTKFTCQECGYQSPKYMGKCPGCGQWNTLV-----EEME-PVVSSRRLNYANAIQTEVTK 58
Query: 169 PVRLLEVNKGMKQLDWRIPLSGLFGNEVARXXXXXXXXXXXXXXXXDPGVGKSTLLLQMA 228
P RL EV + + RI F E R DPG+GKSTLLLQ++
Sbjct: 59 PRRLTEVET---KSEARIETK--F-QEFNRVLGGGIVDGSLVLIGGDPGIGKSTLLLQIS 112
Query: 229 AIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLS 288
+ +AD V+Y+SGEES +QI RADR+ + LF+ S TD++ I ++ ++
Sbjct: 113 SQLAD-----SSYDVLYISGEESAKQIKLRADRLHVNGSNLFVVSETDLQRIATHIEEMN 167
Query: 289 PRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGP 348
P ++IDSIQT++L V + G + QV+ECT+ L++ AK IP+ + GHVTK G IAGP
Sbjct: 168 PAFVVIDSIQTIHLPEVTSAPGSVAQVRECTAELMKLAKTKGIPIFIVGHVTKEGAIAGP 227
Query: 349 RVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSE 408
R+LEH+VDAVLY EG++ +YR+LR+VKNRFGST+E+G+FEM +LGL V NPS+IFL E
Sbjct: 228 RMLEHMVDAVLYFEGDRHHTYRILRAVKNRFGSTNEMGIFEMKELGLAEVLNPSEIFLEE 287
Query: 409 QHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVLMK 466
+ +AG V M+G+R L+EIQAL S R GI +R +I++VL K
Sbjct: 288 RPVG---VAGSTVVASMEGTRPVLVEIQALISPTSFGNPRRMATGIDHNRVSLIMAVLEK 344
Query: 467 QAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELR 526
+ GL LQ +L V G+ L E A DLAVA +I SSF + A IGE+GL GE+R
Sbjct: 345 RTGLLLQNQDAYLKVAGGLKLDEPAIDLAVALSIASSFRDKSTAPTDAVIGEVGLTGEIR 404
Query: 527 MVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGF-EQMEFIGCKNLKEVINV 578
VSR+E+RV AKLG+++ I+P+ K+L + +E +G NL E + +
Sbjct: 405 RVSRIEQRVQEAAKLGFQRAIIPR---KNLGGWTIPDGIEVVGVSNLGEALRL 454
>TIGR_CMR|DET_0058 [details] [associations]
symbol:DET_0058 "DNA repair protein RadA" species:243164
"Dehalococcoides ethenogenes 195" [GO:0005524 "ATP binding"
evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS]
InterPro:IPR003593 InterPro:IPR004504 PRINTS:PR01874 SMART:SM00382
GO:GO:0005524 GO:GO:0046872 GO:GO:0003684 GO:GO:0006281
EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0017111
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 eggNOG:COG1066 HOGENOM:HOG000218329 KO:K04485
OMA:SIQTLWS ProtClustDB:PRK11823 PANTHER:PTHR32472
TIGRFAMs:TIGR00416 RefSeq:YP_180811.1 ProteinModelPortal:Q3ZAD8
STRING:Q3ZAD8 GeneID:3229039 KEGG:det:DET0058 PATRIC:21607215
BioCyc:DETH243164:GJNF-58-MONOMER Uniprot:Q3ZAD8
Length = 462
Score = 737 (264.5 bits), Expect = 1.9e-81, Sum P(2) = 1.9e-81
Identities = 162/370 (43%), Positives = 233/370 (62%)
Query: 215 DPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSS 274
+PG+GKSTLLLQ+AA +A VVYVSGEE+ QI RA R+ I+ E LFL +
Sbjct: 95 EPGIGKSTLLLQVAASVAQ-----SGGKVVYVSGEENPAQIKMRAQRLGISGEGLFLMAE 149
Query: 275 TDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVL 334
TD+ I+ ++ L P ++IDSIQTV+L + + G + QV+E L+++AK + V
Sbjct: 150 TDLNAILAQLSVLCPLLVVIDSIQTVFLPELEAAPGAINQVRESALRLMQWAKSSGASVF 209
Query: 335 LAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLG 394
+ HVTK G+IAGPR+LEHIVD V+Y EGE S+YRL+RSVKNRFGST+E+G+FEM G
Sbjct: 210 ITAHVTKEGNIAGPRILEHIVDVVMYFEGESQSAYRLVRSVKNRFGSTNEVGIFEMKSEG 269
Query: 395 LQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGI 452
L V+NPS+IFLS + +++ G AV +++GSR L+E+QAL S R NG+
Sbjct: 270 LVEVANPSQIFLSNRQANT---VGSAVTAVLEGSRPLLVEVQALTNTTSFGQPRRTANGV 326
Query: 453 QASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPI-PN 511
+R MI +VL K+ ++L I +N G+ L E A DLA+A AI SS+ + + P
Sbjct: 327 DFNRTLMIAAVLSKRLSMRLGTQDIIVNATGGIRLDEPAADLAIALAIASSYRDTGVCPE 386
Query: 512 GIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKN 571
IA +GEIGL GELR + +E+R+S ++LG+++ +VP A ++ I
Sbjct: 387 TIA-LGEIGLSGELRTIPHLERRLSEASRLGFKRALVPAGANCH----NVHNIQIIPVST 441
Query: 572 LKEVINVVFT 581
+KE + + T
Sbjct: 442 VKEAVKLALT 451
Score = 99 (39.9 bits), Expect = 1.9e-81, Sum P(2) = 1.9e-81
Identities = 39/137 (28%), Positives = 56/137 (40%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEV-QPV 170
+R +VCS+CG +W G C AC+ T +E VV +P V P
Sbjct: 4 SRRVYVCSNCGRESLKWLGRCPACQEWNTF--------EEKTVVSPIGRKNEPARVISPA 55
Query: 171 RLLEVNKGMKQLDWRIPLSGLFGNEVARXXXXXXXXXXXXXXXXDPGVGKSTLLLQMAAI 230
L + + + +S E R +PG+GKSTLLLQ+AA
Sbjct: 56 AELSSLQASETTRRSLSIS-----EFNRVLGGGIVPGSLMLLGGEPGIGKSTLLLQVAAS 110
Query: 231 IAD-----VHDLGEPSP 242
+A V+ GE +P
Sbjct: 111 VAQSGGKVVYVSGEENP 127
>TIGR_CMR|ECH_0305 [details] [associations]
symbol:ECH_0305 "DNA repair protein RadA" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0005524 "ATP binding"
evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS]
InterPro:IPR003593 InterPro:IPR004504 PRINTS:PR01874 SMART:SM00382
GO:GO:0005524 GO:GO:0046872 EMBL:CP000236 GenomeReviews:CP000236_GR
GO:GO:0003684 GO:GO:0006281 GO:GO:0017111 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
eggNOG:COG1066 HOGENOM:HOG000218329 KO:K04485 OMA:SIQTLWS
ProtClustDB:PRK11823 PANTHER:PTHR32472 TIGRFAMs:TIGR00416
RefSeq:YP_507126.1 ProteinModelPortal:Q2GHF7 STRING:Q2GHF7
GeneID:3927876 KEGG:ech:ECH_0305 PATRIC:20576115
BioCyc:ECHA205920:GJNR-305-MONOMER Uniprot:Q2GHF7
Length = 450
Score = 695 (249.7 bits), Expect = 1.8e-76, Sum P(2) = 1.8e-76
Identities = 150/365 (41%), Positives = 231/365 (63%)
Query: 215 DPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSS 274
+PGVGKSTLLLQ+ AI+ D H S +YVSGEES++QI RADR+ I + L S+
Sbjct: 92 EPGVGKSTLLLQLTAIL-DKHF----STCLYVSGEESIDQIKIRADRLQITQSNIQLLST 146
Query: 275 TDIEDIVEKVQPLSP-RALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPV 333
+ + DI+ ++ + ++IDSIQT+Y ++ S G ++Q++ CT L+ F K+ NI +
Sbjct: 147 SSLSDIIFSLKKNKDFKCVVIDSIQTIYDTRISSSPGTVVQIRMCTHELITFTKQHNIIL 206
Query: 334 LLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQL 393
+ G +TK G IAGP+ LEH+VD VLY EGE + R+LR+VKNRFG T+E+GVFEMS
Sbjct: 207 FILGQITKDGQIAGPKTLEHMVDTVLYFEGENNNQLRILRTVKNRFGPTNEIGVFEMSDK 266
Query: 394 GLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVS--RHVNG 451
GL + NPS +FL+ +++ + G AV ++GSR L+EIQ+L + + V+ R V G
Sbjct: 267 GLIPIKNPSSLFLARSQNNN--IVGSAVFAGIEGSRPILMEIQSLIANTNMVTPRRAVVG 324
Query: 452 IQASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPN 511
+R MII+VL + + L + ++LN+ G+ + E A DLA+AA++ SSF+ IP+
Sbjct: 325 WDVNRLAMIIAVLSAKCNIFLGDKEVYLNIAGGLKICEPAADLAIAASLISSFINIAIPS 384
Query: 512 GIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKN 571
+GEI L GE+R +S ++ R+ KLG+ K I+P + + + + ++ I K
Sbjct: 385 LTIILGEIALSGEVRNISNIDARLKEAHKLGFTKAIIPLNNKHIFSDINIVEIGHI--KT 442
Query: 572 LKEVI 576
LK+ +
Sbjct: 443 LKKYL 447
Score = 94 (38.1 bits), Expect = 1.8e-76, Sum P(2) = 1.8e-76
Identities = 41/132 (31%), Positives = 57/132 (43%)
Query: 111 ANRTNWVCSDCGYTDGQWWGMCRAC-------ESVGTMKRYSAGESDEGPVVQRTWLPQK 163
+ +T +VC CG +W G C AC E GT + S E V+ + L K
Sbjct: 2 STKTFYVCQVCGNQTHRWTGKCNACGNWDSIIEETGTEHLINTQHSSE---VKLSSLSDK 58
Query: 164 PEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARXXXXXXXXXXXXXXXXDPGVGKSTL 223
+ P R + K + +LD R+ FG + +PGVGKSTL
Sbjct: 59 -NTLAPSRF--ITK-ISELD-RV-----FGGGIV--------LGSSTLVGGEPGVGKSTL 100
Query: 224 LLQMAAIIADVH 235
LLQ+ AI+ D H
Sbjct: 101 LLQLTAIL-DKH 111
>TIGR_CMR|SO_1226 [details] [associations]
symbol:SO_1226 "DNA repair protein RadA" species:211586
"Shewanella oneidensis MR-1" [GO:0005524 "ATP binding"
evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS]
InterPro:IPR003593 InterPro:IPR004504 PRINTS:PR01874 SMART:SM00382
GO:GO:0005524 GO:GO:0046872 GO:GO:0003684 GO:GO:0006281
GO:GO:0006508 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0017111
GO:GO:0008233 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 HOGENOM:HOG000218329 KO:K04485
OMA:SIQTLWS ProtClustDB:PRK11823 PANTHER:PTHR32472
TIGRFAMs:TIGR00416 MEROPS:S16.004 RefSeq:NP_716849.1
ProteinModelPortal:Q8EHJ5 GeneID:1169052 KEGG:son:SO_1226
PATRIC:23522108 Uniprot:Q8EHJ5
Length = 454
Score = 756 (271.2 bits), Expect = 5.7e-75, P = 5.7e-75
Identities = 176/473 (37%), Positives = 267/473 (56%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRT-WLPQKPEEVQPV 170
N+T +VC++CG +W G C AC T+ G + G + + EV+ +
Sbjct: 4 NKTAYVCNECGQDFPRWQGQCSACHEWNTITEVRLGAASPGRGTKFAGYAGAGSSEVKTL 63
Query: 171 RLLEVNKGMKQLDWRIP-LSGLFGNEVARXXXXXXXXXXXXXXXXDPGVGKSTLLLQMAA 229
+++N +P + FG E+ R PG GKSTLLLQ
Sbjct: 64 DQIDLNA--------LPRIVSHFG-ELDRVLGGGIVPGSAILIGGHPGAGKSTLLLQTLC 114
Query: 230 IIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSP 289
H L E P +YV+GEES++Q+ RA R+ + T +L + S T +E I E SP
Sbjct: 115 -----H-LAEQMPALYVTGEESLQQVAMRAHRLGLPTNKLRMLSETSVEQICEIALQESP 168
Query: 290 RALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPR 349
+ +++DSIQ +++ VA S G + QV+E S L RFAK+ I V++ GHVTK G +AGP+
Sbjct: 169 KVIVVDSIQVMHMSDVASSPGSVSQVRESASYLTRFAKQHGIAVIMVGHVTKDGSLAGPK 228
Query: 350 VLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQ 409
VLEH +D + EG+ S YR LRS KNRFG+ +ELGVF M++ GL+ V+NPS IFLS
Sbjct: 229 VLEHCIDCSVMFEGDSDSRYRTLRSHKNRFGAINELGVFAMTERGLKEVANPSAIFLSRG 288
Query: 410 HSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVS--RHVN-GIQASRADMIISVLMK 466
+S +G V V+ +G+R L+E+Q L V S +S R V G+ A+R M+++V+ +
Sbjct: 289 EEES---SGSLVMVVWEGTRPLLVELQVL-VDNSAMSNPRRVAVGMDANRLAMLLAVMHR 344
Query: 467 QAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELR 526
GL++ + +F+NVV GV +TET+ DL + A+ SSF +P+ + GE+GL GE+R
Sbjct: 345 HGGLQMSDQDVFVNVVGGVKVTETSADLTLLLAMVSSFRGDILPSDLVVFGEVGLSGEIR 404
Query: 527 MVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVV 579
V ++R+ AK G+++ IVP++ +G ME +G L E + +
Sbjct: 405 PVPNGQERLVEAAKHGFKRAIVPRANVPKKPPVG---MEVVGVSKLSEALEAI 454
>TIGR_CMR|CBU_1422 [details] [associations]
symbol:CBU_1422 "DNA repair protein RadA" species:227377
"Coxiella burnetii RSA 493" [GO:0005524 "ATP binding" evidence=ISS]
[GO:0006281 "DNA repair" evidence=ISS] InterPro:IPR003593
InterPro:IPR004504 PRINTS:PR01874 SMART:SM00382 GO:GO:0005524
GO:GO:0046872 GO:GO:0003684 GO:GO:0006281 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0017111 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
HOGENOM:HOG000218329 KO:K04485 OMA:SIQTLWS ProtClustDB:PRK11823
PANTHER:PTHR32472 TIGRFAMs:TIGR00416 RefSeq:NP_820406.1
ProteinModelPortal:Q83BT0 PRIDE:Q83BT0 GeneID:1209328
KEGG:cbu:CBU_1422 PATRIC:17931597
BioCyc:CBUR227377:GJ7S-1408-MONOMER Uniprot:Q83BT0
Length = 451
Score = 708 (254.3 bits), Expect = 2.3e-74, Sum P(2) = 2.3e-74
Identities = 152/365 (41%), Positives = 225/365 (61%)
Query: 215 DPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSS 274
DPGVGKSTLLLQ+ I+ + +Y+SGEES++QI RA R+ + ++L L +
Sbjct: 96 DPGVGKSTLLLQILCQISRNYS------TLYISGEESLQQIALRAQRLQLPQDKLTLLAE 149
Query: 275 TDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVL 334
T IE I+ + P+ ++IDSIQTVY V + GG+ QV+E + L+RFAK+ I +
Sbjct: 150 THIEQILVLAEQSHPQVMVIDSIQTVYTDTVPSAPGGVGQVRESAAQLVRFAKQKGIALF 209
Query: 335 LAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLG 394
+ GHVTK G IAGPRVLEH+VDAVLY EG+ S +R++R+VKNRFG+ +E+GVF M+ G
Sbjct: 210 IVGHVTKEGAIAGPRVLEHMVDAVLYFEGKNDSRFRVIRAVKNRFGAVNEIGVFAMTNAG 269
Query: 395 LQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVS-RHVN-GI 452
L+ V+NPS IFLS + ++G V V +GSR L+E+QAL + R V G+
Sbjct: 270 LKQVNNPSAIFLSRYETP---VSGSVVTVTWEGSRPLLVEVQALVDESHLANPRRVTVGL 326
Query: 453 QASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNG 512
+ +R M+++ L + G+ + +F+N V G+ + ET DL V A+ SS P+P+
Sbjct: 327 EQNRLSMLLATLHRHGGVPTYDQDVFVNAVGGLRIVETGADLPVLLAVLSSLRNKPLPSD 386
Query: 513 IAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNL 572
+ GE+GL GE+R V ++R+ K G+++ IVPK+ A G ME + L
Sbjct: 387 LIVFGEVGLAGEIRPVPSGQERIKEAVKHGFKRAIVPKANAPKDAPEG---MEIVAADKL 443
Query: 573 KEVIN 577
+ V+N
Sbjct: 444 QSVLN 448
Score = 61 (26.5 bits), Expect = 2.3e-74, Sum P(2) = 2.3e-74
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRAC 135
+T + C CG QW G CR C
Sbjct: 5 KTIFSCQHCGSQYAQWQGQCRDC 27
>UNIPROTKB|Q9X8L5 [details] [associations]
symbol:Q9X8L5 "DNA repair protein radA" species:100226
"Streptomyces coelicolor A3(2)" [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0009295 "nucleoid" evidence=ISS] [GO:0004176
"ATP-dependent peptidase activity" evidence=ISS] [GO:0004252
"serine-type endopeptidase activity" evidence=ISS] [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006515 "misfolded or incompletely
synthesized protein catabolic process" evidence=ISS] [GO:0043565
"sequence-specific DNA binding" evidence=ISS] InterPro:IPR003593
InterPro:IPR004504 PRINTS:PR01874 SMART:SM00382 GO:GO:0005737
GO:GO:0000166 GO:GO:0046872 GO:GO:0003684 GO:GO:0006281
GenomeReviews:AL645882_GR GO:GO:0017111 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009295
HOGENOM:HOG000218329 KO:K04485 OMA:SIQTLWS ProtClustDB:PRK11823
PANTHER:PTHR32472 TIGRFAMs:TIGR00416 EMBL:AL939116 PIR:T36362
RefSeq:NP_627559.1 ProteinModelPortal:Q9X8L5 GeneID:1098788
KEGG:sco:SCO3351 PATRIC:23736458 Uniprot:Q9X8L5
Length = 469
Score = 648 (233.2 bits), Expect = 2.9e-74, Sum P(2) = 2.9e-74
Identities = 139/339 (41%), Positives = 215/339 (63%)
Query: 215 DPGVGKSTLLLQMAAIIA-DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYS 273
+PGVGKSTLLL +AA A D H +YV+GEES Q+ RADR+ + L+L +
Sbjct: 99 EPGVGKSTLLLDVAAKSASDEHR------TLYVTGEESASQVRLRADRIHAIDDHLYLAA 152
Query: 274 STDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPV 333
TD+ ++ + + P LI+DS+QTV + G+ GG+ QV+E AL+R +K+ +
Sbjct: 153 ETDLAAVLGHLDAVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMST 212
Query: 334 LLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQL 393
LL GHVTK G IAGPR+LEH+VD VL+ EG++ + RL+R VKNR+G+TDE+G FE+
Sbjct: 213 LLVGHVTKDGAIAGPRLLEHLVDVVLHFEGDRHARLRLVRGVKNRYGTTDEVGCFELHDE 272
Query: 394 GLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVS--RHVNG 451
G+ +++PS +FL+ + +E + G + V ++G R + E+QAL V S R +G
Sbjct: 273 GITGLADPSGLFLTRR---AEPVPGTCLTVTLEGRRPLVAEVQALTVDSQIPSPRRTTSG 329
Query: 452 IQASRADMIISVLMKQAGLK-LQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIP 510
++ SR M+++VL ++ + L + I+ V GV L+E A DLAVA A+ S+ + P+P
Sbjct: 330 LETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAVALALASAASDTPLP 389
Query: 511 NGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVP 549
+ IGE+GL GE+R V+ +++R+S +LG+ +VP
Sbjct: 390 KNLVAIGEVGLAGEVRRVTGVQRRLSEAHRLGFTHALVP 428
Score = 120 (47.3 bits), Expect = 2.9e-74, Sum P(2) = 2.9e-74
Identities = 43/135 (31%), Positives = 60/135 (44%)
Query: 103 VGTRKKGKANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQ 162
+ R K R ++ C++CG+ +W G C C++ GT++ Y A P V RT P
Sbjct: 1 MAARTKSAKERPSYRCTECGWQTAKWLGRCPECQAWGTVEEYGA------PAV-RTTTPG 53
Query: 163 KPEEVQPVRLLEVNKGMKQLDWRIPLSGLFG-NEVARXXXXXXXXXXXXXXXXDPGVGKS 221
+ V V G Q+D R + G E+ R +PGVGKS
Sbjct: 54 R------VTTSAVPIG--QVDGRQATARSTGVPELDRVLGGGLVPGAVVLVAGEPGVGKS 105
Query: 222 TLLLQMAAIIA-DVH 235
TLLL +AA A D H
Sbjct: 106 TLLLDVAAKSASDEH 120
Score = 43 (20.2 bits), Expect = 0.00062, Sum P(2) = 0.00062
Identities = 8/29 (27%), Positives = 17/29 (58%)
Query: 509 IPNGIAFIGEIGLGGELRMVSRMEKRVST 537
+P+G+ + +G LR++ R +R +T
Sbjct: 434 VPDGMKVLEVADMGDALRVLPRSRRREAT 462
>TIGR_CMR|VC_2343 [details] [associations]
symbol:VC_2343 "DNA repair protein RadA" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0005524 "ATP binding"
evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS]
InterPro:IPR003593 InterPro:IPR004504 PRINTS:PR01874 SMART:SM00382
GO:GO:0005524 GO:GO:0046872 GO:GO:0003684 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006281 GO:GO:0017111
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 KO:K04485 OMA:SIQTLWS ProtClustDB:PRK11823
PANTHER:PTHR32472 TIGRFAMs:TIGR00416 PIR:H82088 RefSeq:NP_231973.1
ProteinModelPortal:Q9KPM4 DNASU:2613139 GeneID:2613139
KEGG:vch:VC2343 PATRIC:20083711 Uniprot:Q9KPM4
Length = 459
Score = 739 (265.2 bits), Expect = 3.6e-73, P = 3.6e-73
Identities = 177/474 (37%), Positives = 273/474 (57%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQP 169
KA R +VC++CG +W G C AC S ++ S P V R V
Sbjct: 4 KAKRA-YVCNECGADFPRWQGQCNACGSWNSISEVRLAAS---PQVARN-----ERLVGY 54
Query: 170 VRLLEVN-KGMKQLDWR-IP--LSGLFGNEVARXXXXXXXXXXXXXXXXDPGVGKSTLLL 225
LE + + +D + +P SG E+ R +PG GKSTLLL
Sbjct: 55 AGALEAKVQTLADIDLQEVPRFTSGF--KELDRVLGGGIVPGAAILIGGNPGAGKSTLLL 112
Query: 226 QMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQ 285
Q +++ G+ P +YV+GEES++Q+ RA R+ + + L + S T+++ I + +
Sbjct: 113 QTMCLLS-----GQ-MPTLYVTGEESLQQVAMRASRLGLPKQHLKMLSETNVDRICQIAE 166
Query: 286 PLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDI 345
PR ++IDSIQ +++ V S G + QV+E +AL R+AK+ N+ V + GHVTK G +
Sbjct: 167 QEKPRIMVIDSIQVMHVADVQSSPGSVAQVRESATALTRYAKQNNVAVFIVGHVTKDGTL 226
Query: 346 AGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIF 405
AGP+VLEHI+D + ++G+ S +R LRS KNRFG+ +ELGVF M+ G++ VSNPS IF
Sbjct: 227 AGPKVLEHIIDCSILLDGDTDSRFRTLRSHKNRFGAVNELGVFAMTGQGMREVSNPSAIF 286
Query: 406 LSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVS--RHVN-GIQASRADMIIS 462
LS E +G +V V+ +G+R L+EIQAL V S ++ R V G++ +R ++++
Sbjct: 287 LSR---GEEATSGSSVMVVWEGTRPLLVEIQAL-VDYSQLANPRRVAVGLEQNRLSLLLA 342
Query: 463 VLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLG 522
VL K GL++ + +F+NVV GV +TET+ DLA+ A+ SSF + P+P + GE+GL
Sbjct: 343 VLHKHGGLQMADQDVFVNVVGGVKVTETSADLALLMALLSSFRDRPLPKDVVVFGEVGLA 402
Query: 523 GELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVI 576
GE+R V ++R++ K G++K IVP + ++ G E M+ G K L + I
Sbjct: 403 GEIRPVPSGQERLNEAFKHGFKKAIVPIA---NMPKGGIEGMQIHGVKKLSDAI 453
>TIGR_CMR|CHY_2347 [details] [associations]
symbol:CHY_2347 "DNA repair protein RadA" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS]
InterPro:IPR003593 InterPro:IPR004504 PRINTS:PR01874 SMART:SM00382
GO:GO:0005524 GO:GO:0046872 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0003684 GO:GO:0006281 GO:GO:0017111 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
eggNOG:COG1066 HOGENOM:HOG000218329 KO:K04485 OMA:SIQTLWS
ProtClustDB:PRK11823 PANTHER:PTHR32472 TIGRFAMs:TIGR00416
RefSeq:YP_361152.1 ProteinModelPortal:Q3A9N2 STRING:Q3A9N2
GeneID:3727511 KEGG:chy:CHY_2347 PATRIC:21277761
BioCyc:CHYD246194:GJCN-2346-MONOMER Uniprot:Q3A9N2
Length = 444
Score = 727 (261.0 bits), Expect = 6.7e-72, P = 6.7e-72
Identities = 177/421 (42%), Positives = 255/421 (60%)
Query: 166 EVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARXXXXXXXXXXXXXXXXDPGVGKSTLLL 225
EV+PV + ++ G + D R +G FG E+ R DPG+GKSTLLL
Sbjct: 46 EVEPVGISKILTG--ETD-RFS-TG-FG-ELDRVLGGGIVAGSLILLGGDPGIGKSTLLL 99
Query: 226 QMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQ 285
Q+A + G+ V+YVSGEES QI RA+R+ I+ E + L T++ +I E
Sbjct: 100 QLAGKV------GQKQKVLYVSGEESPAQIKLRAERLNISGE-IDLLPHTNVAEIEEVAV 152
Query: 286 PLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDI 345
+I+DSIQT+YL + + G + QV+E +R +K+ N + L GHVTK G +
Sbjct: 153 KGGYELIIVDSIQTMYLPELGSAPGTVTQVRESAGRFMRLSKEKNKTIFLIGHVTKDGYL 212
Query: 346 AGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIF 405
AGPRV+EH+VD VLY+EGE+ +++RLLRSVKNRFGST+ELG+FEM GL+ VSNPS+ F
Sbjct: 213 AGPRVMEHMVDVVLYLEGERHNTFRLLRSVKNRFGSTNELGIFEMVGEGLKEVSNPSEFF 272
Query: 406 LS--EQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCV-SGSTVSRHV-NGIQASRADMII 461
+S QH G AV V ++GSR FL+E+QAL +G R V G +R +++
Sbjct: 273 ISLDRQHD----CIGSAVVVSLEGSRPFLVEVQALVAPTGFGTPRRVATGFDYNRFVLLL 328
Query: 462 SVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGL 521
+VL K+ G ++ + +LNVV G+ ++E A DL V A+ SSF E P+PN F+GEIGL
Sbjct: 329 AVLEKKLGFRMSVHDAYLNVVGGLKISEPAADLGVLLAVVSSFREEPLPNDGVFLGEIGL 388
Query: 522 GGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFE-QMEFIGCKNLKEVINVVF 580
GE+R V ++KR+ +LG++K +PK + + F+ +ME NLKE I +F
Sbjct: 389 TGEIRPVLGVDKRLREAERLGFKKAFLPKQS------INFKTEMEITTFANLKEAIFKLF 442
Query: 581 T 581
+
Sbjct: 443 S 443
>UNIPROTKB|P24554 [details] [associations]
symbol:radA "DNA recombination protein" species:83333
"Escherichia coli K-12" [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0003684 "damaged DNA binding"
evidence=IEA] [GO:0000725 "recombinational repair" evidence=IMP]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IMP] InterPro:IPR003593 InterPro:IPR004504
PRINTS:PR01874 PROSITE:PS50162 SMART:SM00382 GO:GO:0005524
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0046872 GO:GO:0003684 EMBL:U14003
GO:GO:0017111 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0000725 EMBL:X63155
EMBL:U59449 PIR:JC1417 RefSeq:NP_418806.1 RefSeq:YP_492519.1
ProteinModelPortal:P24554 SMR:P24554 DIP:DIP-10635N IntAct:P24554
MEROPS:S16.A04 PRIDE:P24554 EnsemblBacteria:EBESCT00000000920
EnsemblBacteria:EBESCT00000018080 GeneID:12933786 GeneID:948912
KEGG:ecj:Y75_p4273 KEGG:eco:b4389 PATRIC:32124394 EchoBASE:EB1273
EcoGene:EG11296 eggNOG:COG1066 HOGENOM:HOG000218329 KO:K04485
OMA:SIQTLWS ProtClustDB:PRK11823 BioCyc:EcoCyc:EG11296-MONOMER
BioCyc:ECOL316407:JW4352-MONOMER Genevestigator:P24554
PANTHER:PTHR32472 TIGRFAMs:TIGR00416 Uniprot:P24554
Length = 460
Score = 722 (259.2 bits), Expect = 2.3e-71, P = 2.3e-71
Identities = 172/473 (36%), Positives = 265/473 (56%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQP 169
KA + +VC++CG +W G C AC + T+ S P+V R +
Sbjct: 3 KAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAAS---PMVARN--ERLSGYAGS 57
Query: 170 VRLLEVNKGMKQLDWR-IPLSGLFGNEVARXXXXXXXXXXXXXXXXDPGVGKSTLLLQMA 228
+ +V K + + +P E R +PG GKSTLLLQ
Sbjct: 58 AGVAKVQK-LSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTL 116
Query: 229 AIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLS 288
+A + +YV+GEES++Q+ RA R+ + T+ L + S T IE I +
Sbjct: 117 CKLA------QQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQ 170
Query: 289 PRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGP 348
P+ ++IDSIQ +++ V S G + QV+E + L RFAK + +++ GHVTK G +AGP
Sbjct: 171 PKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGP 230
Query: 349 RVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSE 408
+VLEH +D + ++G+ S +R LRS KNRFG+ +ELGVF M++ GL+ VSNPS IFLS
Sbjct: 231 KVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSR 290
Query: 409 QHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVS--RHVN-GIQASRADMIISVLM 465
D E +G +V V+ +G+R L+EIQAL V S ++ R V G++ +R ++++VL
Sbjct: 291 --GD-EVTSGSSVMVVWEGTRPLLVEIQAL-VDHSMMANPRRVAVGLEQNRLAILLAVLH 346
Query: 466 KQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGEL 525
+ GL++ + +F+NVV GV +TET+ DLA+ A+ SS + P+P + GE+GL GE+
Sbjct: 347 RHGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEI 406
Query: 526 RMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINV 578
R V ++R+S AK G+R+ IVP + A G M+ G K L + ++V
Sbjct: 407 RPVPSGQERISEAAKHGFRRAIVPAANVPKKAPEG---MQIFGVKKLSDALSV 456
>UNIPROTKB|P65953 [details] [associations]
symbol:radA "DNA repair protein RadA homolog" species:1773
"Mycobacterium tuberculosis" [GO:0005829 "cytosol" evidence=IDA]
InterPro:IPR003593 InterPro:IPR004504 PRINTS:PR01874
PROSITE:PS50162 SMART:SM00382 GO:GO:0005829 GO:GO:0005524
EMBL:AE000516 GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR
GO:GO:0046872 GO:GO:0003684 EMBL:BX842583 GO:GO:0006281
GO:GO:0017111 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 eggNOG:COG1066
HOGENOM:HOG000218329 KO:K04485 OMA:SIQTLWS ProtClustDB:PRK11823
PANTHER:PTHR32472 TIGRFAMs:TIGR00416 PIR:B70804 RefSeq:NP_218102.1
RefSeq:NP_338235.1 RefSeq:YP_006517075.1 ProteinModelPortal:P65953
SMR:P65953 MEROPS:S16.004 EnsemblBacteria:EBMYCT00000003962
EnsemblBacteria:EBMYCT00000070333 GeneID:13317194 GeneID:887287
GeneID:922797 KEGG:mtc:MT3691 KEGG:mtu:Rv3585 KEGG:mtv:RVBD_3585
PATRIC:18129871 TubercuList:Rv3585 Uniprot:P65953
Length = 480
Score = 699 (251.1 bits), Expect = 6.3e-69, P = 6.3e-69
Identities = 165/446 (36%), Positives = 255/446 (57%)
Query: 111 AN-RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQP 169
AN R+ + CS+C + +W G C C GT+ + S G +R+ P P
Sbjct: 2 ANARSQYRCSECRHVSAKWVGRCLECGRWGTVDEVAV-LSAVGGTRRRSVAPASG--AVP 58
Query: 170 VRLLEVNKGMKQLDWRIPLSGLFGNEVARXXXXXXXXXXXXXXXXDPGVGKSTLLLQMAA 229
+ ++ ++ P +G+ +E+ R DPGVGKSTLLL++A
Sbjct: 59 ISAVDAHRTRP-----CP-TGI--DELDRVLGGGIVPGSVTLLAGDPGVGKSTLLLEVAH 110
Query: 230 IIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATE--ELFLYSSTDIEDIVEKVQPL 287
A G + +YVSGEES QI RADR+ TE E++L + +D+ ++++++ +
Sbjct: 111 RWAQS---GRRA--LYVSGEESAGQIRLRADRIGCGTEVEEIYLAAQSDVHTVLDQIETV 165
Query: 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAG 347
P +I+DS+QT+ G GG+ QV+ T+AL AK + ++L GHVTK G IAG
Sbjct: 166 QPALVIVDSVQTMSTSEADGVTGGVTQVRAVTAALTAAAKANEVALILVGHVTKDGAIAG 225
Query: 348 PRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLS 407
PR LEH+VD VL+ EG++ + R++R VKNRFG+ DE+G F + G+ + +PS +FL
Sbjct: 226 PRSLEHLVDVVLHFEGDRNGALRMVRGVKNRFGAADEVGCFLLHDNGIDGIVDPSNLFLD 285
Query: 408 EQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVS--GSTVSRHVNGIQASRADMIISVLM 465
++ + +AG A+ V +DG R + E+QAL + G + R V+GI +RA MI +VL
Sbjct: 286 QRPTP---VAGTAITVTLDGKRPLVGEVQALLATPCGGSPRRAVSGIHQARAAMIAAVLE 342
Query: 466 KQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGEL 525
K A L + N I+L+ V G+ LTE + DLAVA A+ S++ P+P IGE+GL G++
Sbjct: 343 KHARLAIAVNDIYLSTVGGMRLTEPSADLAVAIALASAYANLPLPTTAVMIGEVGLAGDI 402
Query: 526 RMVSRMEKRVSTVAKLGYRKCIVPKS 551
R V+ M +R+S A+ G+ +VP S
Sbjct: 403 RRVNGMARRLSEAARQGFTIALVPPS 428
>TIGR_CMR|CJE_1339 [details] [associations]
symbol:CJE_1339 "DNA repair protein RadA" species:195099
"Campylobacter jejuni RM1221" [GO:0005524 "ATP binding"
evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS]
InterPro:IPR003593 InterPro:IPR004504 PRINTS:PR01874 SMART:SM00382
GO:GO:0005524 GO:GO:0046872 GO:GO:0003684 GO:GO:0006281
EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0017111
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 eggNOG:COG1066 HOGENOM:HOG000218329 KO:K04485
OMA:SIQTLWS ProtClustDB:PRK11823 PANTHER:PTHR32472
TIGRFAMs:TIGR00416 RefSeq:YP_179326.1 ProteinModelPortal:Q5HTQ9
STRING:Q5HTQ9 GeneID:3231846 KEGG:cjr:CJE1339 PATRIC:20044478
BioCyc:CJEJ195099:GJC0-1365-MONOMER Uniprot:Q5HTQ9
Length = 446
Score = 665 (239.2 bits), Expect = 6.8e-69, Sum P(2) = 6.8e-69
Identities = 148/361 (40%), Positives = 219/361 (60%)
Query: 216 PGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSST 275
PGVGKSTLLL++A+ +A + V+YVSGEES QI RADR+ T LFL +
Sbjct: 98 PGVGKSTLLLKIASNLAK-----QGKKVLYVSGEESKAQIKLRADRLEANTPNLFLLTEL 152
Query: 276 DIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLL 335
+E+I+E++ LI+DSIQT+Y + +AG + QV+E T L+R +K NI +
Sbjct: 153 CLENILEELHKKDYSILIVDSIQTLYSNKITSAAGSITQVREITFELMRVSKAYNISTFI 212
Query: 336 AGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGL 395
GH+TK G IAGPRVLEH+VD VLY EG+ RLLR KNRFG T+E+G+FEM+ GL
Sbjct: 213 IGHITKEGAIAGPRVLEHMVDVVLYFEGDATKEIRLLRGFKNRFGGTNEVGIFEMTAKGL 272
Query: 396 QAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVSRHVNGIQAS 455
+ + + F + + ++G A+ V+M+GSR+ ++E+QAL S R G + +
Sbjct: 273 ISAKDLANRFFTR----GKAISGSALGVVMEGSRALVLEVQALVCESSYPKRSATGYEKN 328
Query: 456 RADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAF 515
R DM++++L ++ G+ L +F+N+ GV ++ETA DLAV AAI SSF P+ F
Sbjct: 329 RLDMLLALLERKLGIPLGHYDVFVNISGGVKVSETAADLAVVAAIISSFKNRPLSKDSIF 388
Query: 516 IGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEV 575
IGE+ L GE+R V ++ R+ ++ I+P K L +G + F+ K L +V
Sbjct: 389 IGELSLNGEIREVFSLDTRLKEAKMQKFKNAIIPS---KPLEDIGLKC--FVA-KELSQV 442
Query: 576 I 576
+
Sbjct: 443 L 443
Score = 52 (23.4 bits), Expect = 6.8e-69, Sum P(2) = 6.8e-69
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRAC 135
N+ + C CG +W G C C
Sbjct: 4 NKALFECQACGNQQSKWLGKCPDC 27
>TIGR_CMR|SPO_2674 [details] [associations]
symbol:SPO_2674 "DNA repair protein RadA" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0005524 "ATP binding" evidence=ISS]
[GO:0006281 "DNA repair" evidence=ISS] InterPro:IPR003593
InterPro:IPR004504 PRINTS:PR01874 SMART:SM00382 GO:GO:0005524
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0046872 GO:GO:0003684
GO:GO:0006281 GO:GO:0017111 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 HOGENOM:HOG000218329 KO:K04485
OMA:SIQTLWS ProtClustDB:PRK11823 PANTHER:PTHR32472
TIGRFAMs:TIGR00416 RefSeq:YP_167884.1 ProteinModelPortal:Q5LQ22
GeneID:3193849 KEGG:sil:SPO2674 PATRIC:23378763 Uniprot:Q5LQ22
Length = 453
Score = 668 (240.2 bits), Expect = 1.2e-65, P = 1.2e-65
Identities = 168/439 (38%), Positives = 240/439 (54%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+ ++ CS CG + +W G C C T+ + AG S GP + L K + V L
Sbjct: 3 KPSFSCSACGASFTKWSGRCEGCGDWNTISQ-DAGLS-AGPAKKS--LGAK--RGRAVTL 56
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARXXXXXXXXXXXXXXXXDPGVGKSTLLLQMAAIIA 232
++ ++ +SG+ E+ R DPG+GKSTLLLQ A A
Sbjct: 57 TDL--ASEEAPPPRAMSGI--GELDRVLGGGLVPASAILVGGDPGIGKSTLLLQAVAAFA 112
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+ +YVSGEE+ Q+ RA R+ +A + L + T++ DI+ ++ P +
Sbjct: 113 R-----KGLKTLYVSGEEASAQVRMRARRLGLADAPVQLAAETNLRDILTTLEAEKPGLV 167
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQT++ V + G + QV+ L FAK+T I V++ GHVTK G IAGPRV+E
Sbjct: 168 IIDSIQTMWADNVDSAPGSVSQVRASAHELTTFAKRTGISVIMVGHVTKDGQIAGPRVVE 227
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EGE+ +R+LRSVKNRFG+ DE+GVFEM+ GL V+NPS +FLSE+ +
Sbjct: 228 HMVDTVLYFEGERGHQFRILRSVKNRFGAADEIGVFEMTGAGLAEVTNPSALFLSERGAP 287
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
S G V ++G+R L+E+QAL S R V G R MI++VL + G+
Sbjct: 288 SP---GSVVFAGIEGTRPVLVELQALVAPSPHSQPRRTVVGWDGGRLAMILAVLEARCGI 344
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
++LNV G+ ++E A DLAVAAA+ S+ + +P GEI L G LR S+
Sbjct: 345 PFAGLDVYLNVAGGLKISEPAADLAVAAALLSAREDRALPGDTVIFGEISLSGALRPASQ 404
Query: 531 MEKRVSTVAKLGYRKCIVP 549
E R+ KLG+ I P
Sbjct: 405 TENRLKEAQKLGFTSAIAP 423
>TIGR_CMR|CPS_1105 [details] [associations]
symbol:CPS_1105 "putative DNA repair protein RadA"
species:167879 "Colwellia psychrerythraea 34H" [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS]
InterPro:IPR003593 InterPro:IPR004504 PRINTS:PR01874 SMART:SM00382
GO:GO:0005524 GO:GO:0046872 GO:GO:0003684 GO:GO:0006281
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0017111
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 eggNOG:COG1066 HOGENOM:HOG000218329 KO:K04485
OMA:SIQTLWS ProtClustDB:PRK11823 PANTHER:PTHR32472
TIGRFAMs:TIGR00416 RefSeq:YP_267849.1 ProteinModelPortal:Q487B6
STRING:Q487B6 GeneID:3521857 KEGG:cps:CPS_1105 PATRIC:21465475
BioCyc:CPSY167879:GI48-1187-MONOMER Uniprot:Q487B6
Length = 462
Score = 555 (200.4 bits), Expect = 1.1e-53, P = 1.1e-53
Identities = 143/477 (29%), Positives = 240/477 (50%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQP 169
KA + +VC+DCG +W G CR C + T+ ++ RT +
Sbjct: 3 KAAKIEFVCTDCGMNHTRWQGQCR-CGAWNTLVEMKIPKAASKNAATRTTSTGGYAGLTG 61
Query: 170 VRLLEVNKGMKQLDWRIPLSGLFGNEVARXXXXXXXXXXXXXXXXDPGVGKSTLLLQMAA 229
++N+ ++ +D +G+ E+ R DPG GK+TLL + A
Sbjct: 62 GGSKKINE-IESIDAEKRSTGI--GELDRVLCGGVTTGSVNIISGDPGAGKTTLLSDLVA 118
Query: 230 IIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEE--LFLYSSTDIEDIVEKVQPL 287
++ H +Y + EES+ Q NR R+ + +E L+L + T +E I++++
Sbjct: 119 RMSKTH------ASLYCTAEESLSQFKNRVHRLKLDYDEDNLYLLAETSVEAIIDELDKN 172
Query: 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAG 347
+ +IDSIQ V GS G QVK +L ++ K+ N+ + + HV K+ +IAG
Sbjct: 173 KIKFAVIDSIQAVVTENANGSPGSPSQVKSSAQSLTQYCKQNNVTMFIIAHVNKNNEIAG 232
Query: 348 PRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLS 407
P+ L HIVDA+L+++ R LR+ KNRFG D +G+F+M + G+ +V NPS+IFLS
Sbjct: 233 PQTLVHIVDALLHIDTND-GQIRTLRANKNRFGDIDTVGIFKMCERGMLSVDNPSEIFLS 291
Query: 408 EQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTV--SRHVNGIQASRADMIISVLM 465
++S G + I G+R+ L+EIQ L R G+ +R M+ +L
Sbjct: 292 GSSTESP---GSTITCIRKGNRNLLLEIQCLTTETEAEFPQRVCVGLNMNRIKMLTGILR 348
Query: 466 KQAGLKLQENAIFLNVVSGVAL--TETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGG 523
K K+ + F N+V G+ + +ET DLA+ A+ SS +F IP +GE+ L G
Sbjct: 349 KHTKTKIFHDTFF-NIVGGLKIDESETCIDLALVTALLSSLNDFVIPRNTCIMGELSLNG 407
Query: 524 ELRMVSRMEKRVSTVAKLGYRKCIVP-KSAEKSLATLGFEQMEFIGCKNLKEVINVV 579
++R + RV A+ G+ + +P ++ KS+ LG ++ + K + E+I ++
Sbjct: 408 DVRPIDSGVPRVKEAAQHGFTEIFIPYRNYHKSMEGLG-ANIKAV--KTIHELIELI 461
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.135 0.391 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 583 556 0.00098 119 3 11 22 0.39 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 15
No. of states in DFA: 617 (66 KB)
Total size of DFA: 286 KB (2150 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 42.25u 0.12s 42.37t Elapsed: 00:00:02
Total cpu time: 42.25u 0.12s 42.37t Elapsed: 00:00:02
Start: Sat May 11 08:42:33 2013 End: Sat May 11 08:42:35 2013