BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007957
(583 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|297743168|emb|CBI36035.3| unnamed protein product [Vitis vinifera]
Length = 583
Score = 791 bits (2042), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 413/599 (68%), Positives = 467/599 (77%), Gaps = 36/599 (6%)
Query: 1 MQFPEMKSSVRFF-----HSPKQFLP--LFNRTHFLSRQFPQFSRQFHSTTLRLCSAGES 53
MQ +M++ F+ +PK+ +P L F S Q P+FSR F S +G
Sbjct: 1 MQISDMRALRTFYTQKHLFNPKKHIPISLSPLISFQSLQNPKFSRHFRSQYSDRQESGSR 60
Query: 54 QTVPPVWSIYGSSIANGVPESSGNVNSQSSSDFEKPQVKKKTNLGLGD--LVGTRKKGKA 111
+G S +VN S EK + + L D +V RKKGK+
Sbjct: 61 ---------------SGAERSEVSVNKGFGS-VEKARFGGRYGLASSDGGVVRGRKKGKS 104
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEG----------PVVQRTWLP 161
+ WVCSDCGY+DGQWWG CR C VGTMK++SAGES G V R+WLP
Sbjct: 105 -KVCWVCSDCGYSDGQWWGACRECNKVGTMKQFSAGESGNGGSRVSGFEVSDNVVRSWLP 163
Query: 162 QKPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKS 221
Q+P EVQP+RL +VN+G+ Q++WRIPL G FG EVARVLGGGLVPGSLVL+GGDPG GKS
Sbjct: 164 QQPTEVQPLRLTDVNRGINQMNWRIPLHGPFGYEVARVLGGGLVPGSLVLVGGDPGAGKS 223
Query: 222 TLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIV 281
TLLLQ+AAIIA+ HD+G SPVVYVSGEESVEQIGNRADRM I TEELFLYSSTDIEDI+
Sbjct: 224 TLLLQIAAIIAEGHDIGGSSPVVYVSGEESVEQIGNRADRMRIDTEELFLYSSTDIEDIL 283
Query: 282 EKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTK 341
+V LSPRAL++DSIQTVYL+GV GSAGGL QVKECTSALLRFAKKTNIPV L GHVTK
Sbjct: 284 GQVHLLSPRALVVDSIQTVYLKGVIGSAGGLSQVKECTSALLRFAKKTNIPVFLIGHVTK 343
Query: 342 SGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNP 401
SGDIAGPRVLEHIVD VLYMEGEK SS+RLLRSVKNRFGSTDELGVFEM+QLGLQ VSNP
Sbjct: 344 SGDIAGPRVLEHIVDVVLYMEGEKHSSHRLLRSVKNRFGSTDELGVFEMTQLGLQVVSNP 403
Query: 402 SKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVSRHVNGIQASRADMII 461
S++FLSEQ+SDSE L GLAVAVIMDGSRSFL+EIQALC+SGSTV+R VNG+ ASRADMII
Sbjct: 404 SELFLSEQNSDSEILTGLAVAVIMDGSRSFLLEIQALCLSGSTVARQVNGVPASRADMII 463
Query: 462 SVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGL 521
+VLMKQAGLKLQ+N IFLNVVSGV L ETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGL
Sbjct: 464 AVLMKQAGLKLQDNGIFLNVVSGVTLAETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGL 523
Query: 522 GGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
GGELR V RMEKRV+TVAKLGY+KCIVPK+AEKSL TL +E +GC+N+KEVIN VF
Sbjct: 524 GGELRTVPRMEKRVNTVAKLGYKKCIVPKAAEKSLPTLEDMNIEIVGCRNMKEVINTVF 582
>gi|225442424|ref|XP_002277638.1| PREDICTED: DNA repair protein RadA homolog [Vitis vinifera]
Length = 624
Score = 786 bits (2030), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 413/615 (67%), Positives = 468/615 (76%), Gaps = 47/615 (7%)
Query: 11 RFFHSPKQFLP--LFNRTHFLSRQFPQFSRQFHSTTLRLCSAGES--------------- 53
+ +PK+ +P L F S Q P+FSR F T R S
Sbjct: 11 KHLFNPKKHIPISLSPLISFQSLQNPKFSRHFRCTNHRRSEESTSLDADSPSIGIGSSSP 70
Query: 54 -----QTVPPVWSIY---GSSIAN--------GVPESSGNVNSQSSSDFEKPQVKKKTNL 97
+ W+++ GS ++ G S +VN S EK + + L
Sbjct: 71 DTETNSSRRRTWTVFNTEGSQYSDRQESGSRSGAERSEVSVNKGFGS-VEKARFGGRYGL 129
Query: 98 GLGD--LVGTRKKGKANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEG--- 152
D +V RKKGK+ + WVCSDCGY+DGQWWG CR C VGTMK++SAGES G
Sbjct: 130 ASSDGGVVRGRKKGKS-KVCWVCSDCGYSDGQWWGACRECNKVGTMKQFSAGESGNGGSR 188
Query: 153 -------PVVQRTWLPQKPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLV 205
V R+WLPQ+P EVQP+RL +VN+G+ Q++WRIPL G FG EVARVLGGGLV
Sbjct: 189 VSGFEVSDNVVRSWLPQQPTEVQPLRLTDVNRGINQMNWRIPLHGPFGYEVARVLGGGLV 248
Query: 206 PGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIA 265
PGSLVL+GGDPG GKSTLLLQ+AAIIA+ HD+G SPVVYVSGEESVEQIGNRADRM I
Sbjct: 249 PGSLVLVGGDPGAGKSTLLLQIAAIIAEGHDIGGSSPVVYVSGEESVEQIGNRADRMRID 308
Query: 266 TEELFLYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRF 325
TEELFLYSSTDIEDI+ +V LSPRAL++DSIQTVYL+GV GSAGGL QVKECTSALLRF
Sbjct: 309 TEELFLYSSTDIEDILGQVHLLSPRALVVDSIQTVYLKGVIGSAGGLSQVKECTSALLRF 368
Query: 326 AKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDEL 385
AKKTNIPV L GHVTKSGDIAGPRVLEHIVD VLYMEGEK SS+RLLRSVKNRFGSTDEL
Sbjct: 369 AKKTNIPVFLIGHVTKSGDIAGPRVLEHIVDVVLYMEGEKHSSHRLLRSVKNRFGSTDEL 428
Query: 386 GVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTV 445
GVFEM+QLGLQ VSNPS++FLSEQ+SDSE L GLAVAVIMDGSRSFL+EIQALC+SGSTV
Sbjct: 429 GVFEMTQLGLQVVSNPSELFLSEQNSDSEILTGLAVAVIMDGSRSFLLEIQALCLSGSTV 488
Query: 446 SRHVNGIQASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFL 505
+R VNG+ ASRADMII+VLMKQAGLKLQ+N IFLNVVSGV L ETAGDLAVAAAICSSFL
Sbjct: 489 ARQVNGVPASRADMIIAVLMKQAGLKLQDNGIFLNVVSGVTLAETAGDLAVAAAICSSFL 548
Query: 506 EFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQME 565
EFPIPNGIAFIGEIGLGGELR V RMEKRV+TVAKLGY+KCIVPK+AEKSL TL +E
Sbjct: 549 EFPIPNGIAFIGEIGLGGELRTVPRMEKRVNTVAKLGYKKCIVPKAAEKSLPTLEDMNIE 608
Query: 566 FIGCKNLKEVINVVF 580
+GC+N+KEVIN VF
Sbjct: 609 IVGCRNMKEVINTVF 623
>gi|224059162|ref|XP_002299746.1| predicted protein [Populus trichocarpa]
gi|222847004|gb|EEE84551.1| predicted protein [Populus trichocarpa]
Length = 525
Score = 785 bits (2026), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/495 (78%), Positives = 431/495 (87%), Gaps = 14/495 (2%)
Query: 97 LGLGDLVGTRKKGKANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRY-----------S 145
+G GD R KGK+ +T+WVC CG+T GQWWG CR+C VGTMK++ S
Sbjct: 32 VGSGDRAVYRTKGKS-KTSWVCEICGFTSGQWWGSCRSCNEVGTMKQFFEAKIGSGNKVS 90
Query: 146 AGESDEGPVVQRTWLPQKPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLV 205
E+ E V R+WLPQKP E++P+RL +VN+GM L+WRIPLSGLFG+EV RVLGGGLV
Sbjct: 91 GIEASENAV--RSWLPQKPGELRPLRLTDVNRGMNMLNWRIPLSGLFGSEVERVLGGGLV 148
Query: 206 PGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIA 265
PGSLVL+GGDPGVGKSTLLLQ+AAIIAD D G +PVVYVSGEESVEQIGNRADRM I
Sbjct: 149 PGSLVLVGGDPGVGKSTLLLQVAAIIADSEDPGGSAPVVYVSGEESVEQIGNRADRMEIG 208
Query: 266 TEELFLYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRF 325
TEEL+LYSSTDIEDI+ K+Q LSPRALIIDSIQTVYL+GVAGSAGGL QVKECTSALLRF
Sbjct: 209 TEELYLYSSTDIEDILGKIQHLSPRALIIDSIQTVYLKGVAGSAGGLSQVKECTSALLRF 268
Query: 326 AKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDEL 385
AK TNIP+LL GHV KSGDIAGPRVLEHIVD VLYMEGEK+SS+RLLR VKNRFGSTDEL
Sbjct: 269 AKTTNIPILLIGHVNKSGDIAGPRVLEHIVDVVLYMEGEKYSSHRLLRPVKNRFGSTDEL 328
Query: 386 GVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTV 445
GVFEMSQLGL VSNPS+IFL+EQHSDS+FLAGLAVAVIMDGSRSFLIEIQALCVSGS+V
Sbjct: 329 GVFEMSQLGLAVVSNPSEIFLTEQHSDSDFLAGLAVAVIMDGSRSFLIEIQALCVSGSSV 388
Query: 446 SRHVNGIQASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFL 505
SRH+NGIQ+SRADMIISVL+KQAGL LQENAIFLNVVSGV LTETAGD+A+AAAICSSFL
Sbjct: 389 SRHINGIQSSRADMIISVLIKQAGLMLQENAIFLNVVSGVMLTETAGDVAIAAAICSSFL 448
Query: 506 EFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQME 565
EFPIPN IAFIGEIGLGGELR V RMEKRV TVAKLGY+ C++PKSAEKSLA LGF+ M+
Sbjct: 449 EFPIPNNIAFIGEIGLGGELRAVPRMEKRVHTVAKLGYKMCVIPKSAEKSLANLGFQGMK 508
Query: 566 FIGCKNLKEVINVVF 580
+GCKNLKEVIN VF
Sbjct: 509 IVGCKNLKEVINTVF 523
>gi|147856591|emb|CAN82495.1| hypothetical protein VITISV_033044 [Vitis vinifera]
Length = 647
Score = 720 bits (1859), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/648 (60%), Positives = 456/648 (70%), Gaps = 90/648 (13%)
Query: 11 RFFHSPKQFLPLFNR--THFLSRQFPQFSRQFHSTTLRL----------------CSA-- 50
R SPK+ +P+ F S Q P FSR F T R CS+
Sbjct: 11 RHLLSPKKHIPISPSPLISFQSHQNPNFSRHFRCTNHRRSEESTSLDADSPGIGSCSSSP 70
Query: 51 -GESQTVPP-VWSIYGSSIANGVPESSGNVNSQSSSDFEKPQVKKKTNLGL--------- 99
GE+ + P W+++ + + + S S+S S E+ +V +K G
Sbjct: 71 DGETNSSRPRTWTVFNTEGS----QYSDIQESESKSAAERSEVSEKRGYGSVGKARLGGR 126
Query: 100 -------GDLVGTRKKGKANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEG 152
G +V RKKGK+ + WVCSDCG++DG WWG CR C VGTMK++S GES G
Sbjct: 127 YVPASSDGGVVRGRKKGKS-KVFWVCSDCGHSDGHWWGACRECNKVGTMKQFSEGESGIG 185
Query: 153 ----------PVVQRTWLPQKPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGG 202
+ R+WLPQ+P E QP RL +VN+G+ QL+WRIPL G FG+EVARVLGG
Sbjct: 186 GSRASGFEVSENMVRSWLPQQPTETQPQRLTDVNRGINQLNWRIPLHGPFGSEVARVLGG 245
Query: 203 GLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRM 262
GLVPGSLVL+GGDPG GKSTLLLQ+AAIIA+ HD SPVVYVSGEESVEQIGNRADRM
Sbjct: 246 GLVPGSLVLVGGDPGAGKSTLLLQIAAIIAEGHD-DRSSPVVYVSGEESVEQIGNRADRM 304
Query: 263 MIATEELFLYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSAL 322
I TE+LFLYSSTDIEDI+ +V LSPRAL++DSIQTVYL+GV GSAGGL+QVKECTSAL
Sbjct: 305 RIETEDLFLYSSTDIEDILGQVHHLSPRALVVDSIQTVYLKGVTGSAGGLLQVKECTSAL 364
Query: 323 LRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGST 382
LRFAKKTNIPV L GHVTKSGDIAGPRVLEHIVD GEK SS+RLLRSVKNRFGST
Sbjct: 365 LRFAKKTNIPVFLIGHVTKSGDIAGPRVLEHIVD------GEKHSSHRLLRSVKNRFGST 418
Query: 383 DELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG 442
DELGVFEM+QLGLQ VSNPS++FLSE++SDSE LAGLAVAVIMDGSRSFL+EIQALC+SG
Sbjct: 419 DELGVFEMTQLGLQVVSNPSELFLSERNSDSEILAGLAVAVIMDGSRSFLLEIQALCLSG 478
Query: 443 STVSRHVNGIQA--SRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAI 500
+R V G+ RA+MII VLMKQAGLKLQEN IFLNVVSGV L ETAGD+AVAAAI
Sbjct: 479 IIFARQVKGVPVPVRRAEMIIPVLMKQAGLKLQENGIFLNVVSGVTLAETAGDVAVAAAI 538
Query: 501 CSS----------------------------FLEFPIPNGIAFIGEIGLGGELRMVSRME 532
CS FLEFPIPNGIAFIGEIGLGGELR V R+E
Sbjct: 539 CSRHVLYHLISHHLLLSTGCNFYLHAKYRLIFLEFPIPNGIAFIGEIGLGGELRTVPRIE 598
Query: 533 KRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
KRV+TVAKLGY+KCIVPK+AEKSL TL +E + C+NLKEVI+ VF
Sbjct: 599 KRVNTVAKLGYKKCIVPKAAEKSLPTLEDMNIEIVSCRNLKEVISTVF 646
>gi|356526069|ref|XP_003531642.1| PREDICTED: DNA repair protein RadA homolog [Glycine max]
Length = 560
Score = 716 bits (1848), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/484 (74%), Positives = 405/484 (83%), Gaps = 11/484 (2%)
Query: 106 RKKGKANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESD---------EGPVVQ 156
+KK + WVC +CGY+ GQWWGMCR+C GTMK ++D E VV
Sbjct: 73 KKKAGKEKVQWVCCNCGYSAGQWWGMCRSCSVSGTMKEAKFSDADTVVSGFSVLEDGVVG 132
Query: 157 RTWLPQKPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDP 216
+WLPQ+ E++P+RL EVNKG+ WRIPLSG FG+EV+RV GGGLVPGSL LIGGDP
Sbjct: 133 -SWLPQQEGEMRPLRLTEVNKGLDHHHWRIPLSGPFGDEVSRVFGGGLVPGSLTLIGGDP 191
Query: 217 GVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTD 276
GVGKSTLLLQ+AAIIA GE PVVYVSGEESVEQIGNRADR+ I ++ ++LYSS D
Sbjct: 192 GVGKSTLLLQIAAIIAKGDSDGEACPVVYVSGEESVEQIGNRADRLRIESD-IYLYSSND 250
Query: 277 IEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLA 336
+EDI++KVQ LSP ALI+DSIQTVYL+G+ GS GG+MQVKECTSALLRFAKKTNIPVLL
Sbjct: 251 VEDILKKVQYLSPGALIVDSIQTVYLKGIMGSPGGIMQVKECTSALLRFAKKTNIPVLLI 310
Query: 337 GHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQ 396
GHVTKSGDIAGPRVLEHIVD VLYMEGEK+SS+R+LR+VKNRFGS DELGVFEMS GLQ
Sbjct: 311 GHVTKSGDIAGPRVLEHIVDVVLYMEGEKYSSHRMLRAVKNRFGSADELGVFEMSHSGLQ 370
Query: 397 AVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVSRHVNGIQASR 456
AVSN S++FLSEQ DSE LAGLAVAVIMDGSR+FLIEIQALC+SGST SR VNGIQ R
Sbjct: 371 AVSNASEMFLSEQLLDSEILAGLAVAVIMDGSRTFLIEIQALCLSGSTGSRQVNGIQQKR 430
Query: 457 ADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFI 516
ADMIISVL+KQAGL+LQE+A+FLNVVSG+ALTETAGDLA+AAAICSS LE PIPN IAFI
Sbjct: 431 ADMIISVLIKQAGLRLQEHAVFLNVVSGLALTETAGDLAIAAAICSSCLEIPIPNDIAFI 490
Query: 517 GEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVI 576
GEIGLGGELRMV RMEKRV TVAKLGYR CIVPK AEK+L T G E+ME +GC+NLKEVI
Sbjct: 491 GEIGLGGELRMVPRMEKRVYTVAKLGYRMCIVPKVAEKALGTEGLEKMEVVGCRNLKEVI 550
Query: 577 NVVF 580
N VF
Sbjct: 551 NTVF 554
>gi|357513543|ref|XP_003627060.1| DNA repair protein radA-like protein [Medicago truncatula]
gi|355521082|gb|AET01536.1| DNA repair protein radA-like protein [Medicago truncatula]
Length = 643
Score = 707 bits (1824), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/518 (68%), Positives = 425/518 (82%), Gaps = 12/518 (2%)
Query: 74 SSGNVNSQSSSDFEKPQVKKKTNLGLGD----LVGTRKKGKANRTNWVCSDCGYTDGQWW 129
+S + N+ + +F K + N G+ + G +KK + WVCSDCGY+ GQWW
Sbjct: 37 ASSSTNNNKAENFLKQNATSRVNPIEGNENEVVFGRKKKKGKEKVYWVCSDCGYSTGQWW 96
Query: 130 GMCRACESVGTMKRYSAGESDEG----PVVQR---TWLPQKPEEVQPVRLLEVNKGMKQL 182
G+CR+C GTMK + +S E V++ +WLP+K E++P+RL EVN+G+ L
Sbjct: 97 GVCRSCSVSGTMKEFHEVKSSEKVSGFSVLEDGLGSWLPEKSGELRPLRLSEVNRGVDHL 156
Query: 183 DWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSP 242
WRI LSG FGNEV+RVLGGGLVPGSL L+GGDPGVGKSTLLLQ+AA++A+ + SP
Sbjct: 157 HWRIRLSGPFGNEVSRVLGGGLVPGSLTLVGGDPGVGKSTLLLQVAAMLAEGDEDVGASP 216
Query: 243 VVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIIDSIQTVYL 302
VVYVSGEESVEQIGNRADR+ I ++ ++LYSS DIEDI++KVQ +SPRAL++DS+QTVYL
Sbjct: 217 VVYVSGEESVEQIGNRADRLTIGSD-IYLYSSNDIEDILKKVQYISPRALVVDSVQTVYL 275
Query: 303 RGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYME 362
+G+ GS GG+MQVKECTSALLRFAK TNIPVLL GHVTKSGDIAGPRVLEHIVD VLYME
Sbjct: 276 KGIMGSPGGIMQVKECTSALLRFAKTTNIPVLLIGHVTKSGDIAGPRVLEHIVDVVLYME 335
Query: 363 GEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVA 422
GEK++S+R+LR+VKNRFGSTDELGVFEMS GLQAVSN S++FLSEQ DS+ LAGLAVA
Sbjct: 336 GEKYTSHRMLRAVKNRFGSTDELGVFEMSHSGLQAVSNASEMFLSEQDLDSDVLAGLAVA 395
Query: 423 VIMDGSRSFLIEIQALCVSGSTVSRHVNGIQASRADMIISVLMKQAGLKLQENAIFLNVV 482
VIMDGSR+FLIEIQALC+SGST SR NGIQA+RADMIISVL+KQAGL+LQE+A+FLNVV
Sbjct: 396 VIMDGSRTFLIEIQALCLSGSTGSRQFNGIQANRADMIISVLIKQAGLRLQEHAVFLNVV 455
Query: 483 SGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLG 542
SG+ +TETAGDLA+AAAICSS LE PIPN IAFIGEIGLGGELRMV+RMEKRV TVAKLG
Sbjct: 456 SGLTVTETAGDLAIAAAICSSCLELPIPNDIAFIGEIGLGGELRMVTRMEKRVHTVAKLG 515
Query: 543 YRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
YR CI+PK+AEK L T G E ++ +GC+NLK+VIN +F
Sbjct: 516 YRMCIIPKAAEKVLGTEGLENIKVVGCRNLKDVINTIF 553
>gi|145359080|ref|NP_199845.3| ATP binding / damaged DNA binding / nucleoside-triphosphatase/
nucleotide binding protein [Arabidopsis thaliana]
gi|110741561|dbj|BAE98729.1| DNA repair protein-like [Arabidopsis thaliana]
gi|332008546|gb|AED95929.1| ATP binding / damaged DNA binding / nucleoside-triphosphatase/
nucleotide binding protein [Arabidopsis thaliana]
Length = 587
Score = 707 bits (1824), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/496 (70%), Positives = 411/496 (82%), Gaps = 18/496 (3%)
Query: 100 GDLVGTRKKGKANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGES---------- 149
G++V + K ++T WVC CG+++GQWWG CRAC VGTMKR+S G
Sbjct: 93 GEVVMNKSKKGKSKTVWVCESCGHSEGQWWGSCRACHKVGTMKRFSEGSESSASGGGGNG 152
Query: 150 -----DEGPVVQRTWLPQKPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGL 204
EG + +WLP++ VQP RL +V G+ Q WRI L GLFGNEVARVLGGGL
Sbjct: 153 TGLGFTEGKGL--SWLPEQAT-VQPHRLTDVIHGITQQQWRISLPGLFGNEVARVLGGGL 209
Query: 205 VPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMI 264
PGSL+LIGGDPG+GKSTLLLQ+A+IIA+ +L EP+PV+Y+SGEESVEQIG+RADRM I
Sbjct: 210 APGSLILIGGDPGIGKSTLLLQIASIIAEGSELAEPAPVLYISGEESVEQIGSRADRMRI 269
Query: 265 ATEELFLYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLR 324
TEEL+L+SS+D++DI+ K LSPRALIIDSIQTVYL+ V GSAGGL QVKECTS LLR
Sbjct: 270 QTEELYLFSSSDLQDILNKAHRLSPRALIIDSIQTVYLKDVTGSAGGLTQVKECTSTLLR 329
Query: 325 FAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDE 384
FAKK+NIPV L GHVTK+GDIAGPRVLEHIVD VLY+EGE+ S+YRLLRSVKNRFGSTDE
Sbjct: 330 FAKKSNIPVFLVGHVTKAGDIAGPRVLEHIVDVVLYLEGEESSTYRLLRSVKNRFGSTDE 389
Query: 385 LGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGST 444
LGVFEM+ GL+ VSNPS I+LS+Q+ DS+ LAGLAVAV+MDGSRSFLIE+QALC GST
Sbjct: 390 LGVFEMANSGLEVVSNPSGIYLSQQNPDSDVLAGLAVAVVMDGSRSFLIEVQALCSPGST 449
Query: 445 VSRHVNGIQASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSF 504
VSRHVNG+QASRADMII+VLMKQAGL++QEN IFLNV +G+AL+ETAGDLA+AAAICSSF
Sbjct: 450 VSRHVNGVQASRADMIIAVLMKQAGLRIQENGIFLNVANGMALSETAGDLAIAAAICSSF 509
Query: 505 LEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQM 564
LEFPIP+G+AFIGEIGLGGE+R V RMEKRVSTVAKLG+ KC+VPKS E+SL L +++
Sbjct: 510 LEFPIPHGVAFIGEIGLGGEVRTVPRMEKRVSTVAKLGFNKCVVPKSVEESLKALSLKEI 569
Query: 565 EFIGCKNLKEVINVVF 580
E IGCKNLKE+IN VF
Sbjct: 570 EIIGCKNLKELINAVF 585
>gi|9758916|dbj|BAB09453.1| DNA repair protein-like [Arabidopsis thaliana]
Length = 484
Score = 692 bits (1786), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/489 (70%), Positives = 403/489 (82%), Gaps = 26/489 (5%)
Query: 107 KKGKANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGES---------------DE 151
KKGK+ +T WVC CG+++GQWWG CRAC VGTMKR+S G E
Sbjct: 5 KKGKS-KTVWVCESCGHSEGQWWGSCRACHKVGTMKRFSEGSESSASGGGGNGTGLGFTE 63
Query: 152 GPVVQRTWLPQKPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVL 211
G + +WLP++ VQP RL +V G+ Q WRI L GLFGNEVARVLGGGL PGSL+L
Sbjct: 64 GKGL--SWLPEQA-TVQPHRLTDVIHGITQQQWRISLPGLFGNEVARVLGGGLAPGSLIL 120
Query: 212 IGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFL 271
IGGDPG+GKSTLLLQ + +L EP+PV+Y+SGEESVEQIG+RADRM I TEEL+L
Sbjct: 121 IGGDPGIGKSTLLLQGS-------ELAEPAPVLYISGEESVEQIGSRADRMRIQTEELYL 173
Query: 272 YSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNI 331
+SS+D++DI+ K LSPRALIIDSIQTVYL+ V GSAGGL QVKECTS LLRFAKK+NI
Sbjct: 174 FSSSDLQDILNKAHRLSPRALIIDSIQTVYLKDVTGSAGGLTQVKECTSTLLRFAKKSNI 233
Query: 332 PVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMS 391
PV L GHVTK+GDIAGPRVLEHIVD VLY+EGE+ S+YRLLRSVKNRFGSTDELGVFEM+
Sbjct: 234 PVFLVGHVTKAGDIAGPRVLEHIVDVVLYLEGEESSTYRLLRSVKNRFGSTDELGVFEMA 293
Query: 392 QLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVSRHVNG 451
GL+ VSNPS I+LS+Q+ DS+ LAGLAVAV+MDGSRSFLIE+QALC GSTVSRHVNG
Sbjct: 294 NSGLEVVSNPSGIYLSQQNPDSDVLAGLAVAVVMDGSRSFLIEVQALCSPGSTVSRHVNG 353
Query: 452 IQASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPN 511
+QASRADMII+VLMKQAGL++QEN IFLNV +G+AL+ETAGDLA+AAAICSSFLEFPIP+
Sbjct: 354 VQASRADMIIAVLMKQAGLRIQENGIFLNVANGMALSETAGDLAIAAAICSSFLEFPIPH 413
Query: 512 GIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKN 571
G+AFIGEIGLGGE+R V RMEKRVSTVAKLG+ KC+VPKS E+SL L +++E IGCKN
Sbjct: 414 GVAFIGEIGLGGEVRTVPRMEKRVSTVAKLGFNKCVVPKSVEESLKALSLKEIEIIGCKN 473
Query: 572 LKEVINVVF 580
LKE+IN VF
Sbjct: 474 LKELINAVF 482
>gi|449462910|ref|XP_004149178.1| PREDICTED: DNA repair protein RadA homolog [Cucumis sativus]
Length = 630
Score = 679 bits (1752), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/608 (60%), Positives = 434/608 (71%), Gaps = 49/608 (8%)
Query: 9 SVRFFHSPKQFLPLFNRTHFLSRQFPQFSRQFHSTTLRLCSAG-ESQTVPPVWSIYGS-- 65
S RF+ +P LF+ H LS P L +G E + VWSIYGS
Sbjct: 34 SCRFYLAPNS--SLFHYAH-LSTHAPNADP--------LAGSGPEHEKGRNVWSIYGSVS 82
Query: 66 ----------SIANGVPESS-GNVNSQSSSDF-EKPQVKKKTNLGL----------GDLV 103
SI PE S G N S D K + +GL G +V
Sbjct: 83 SKLATQRVGSSIDGKDPEPSIGVQNGDGSEDLLNKKTSESVRKVGLEDRLTCKPNSGKVV 142
Query: 104 GTRKKGKANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQK 163
G +KK N+ +WVCS+CG+++GQWWG C++C VGTMK++S G G +RTWLP++
Sbjct: 143 GLKKK---NKVSWVCSNCGHSEGQWWGTCQSCHMVGTMKQFSVGNDSGGE--RRTWLPKE 197
Query: 164 PEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTL 223
V P+RL +VN+G+ DWR+PL G FGNEVARVLGGGLVPGSLVLIGGDPGVGKSTL
Sbjct: 198 VTNVNPLRLTDVNRGINTQDWRLPLPGPFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTL 257
Query: 224 LLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEK 283
LLQ+AAI+A+ G VVYVSGEESVEQIGNRADR+ I TE LFLYSSTDI+DI EK
Sbjct: 258 LLQIAAILAEGCGEGGSKSVVYVSGEESVEQIGNRADRLKIQTENLFLYSSTDIQDIFEK 317
Query: 284 VQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSG 343
+QPLSPRALIIDSIQTVYL+ VAGSAGG+ QVKECTSA LRFAK T IP+ L GHV KSG
Sbjct: 318 IQPLSPRALIIDSIQTVYLQEVAGSAGGISQVKECTSAFLRFAKITGIPIFLIGHVNKSG 377
Query: 344 DIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSK 403
++AGPR+LEHIVD VLY+EGEK S +RLLR VKNRFGSTDELGVFEM GL+ VSNPS+
Sbjct: 378 EVAGPRLLEHIVDVVLYVEGEKCSLHRLLRPVKNRFGSTDELGVFEMLPSGLEVVSNPSE 437
Query: 404 IFLSEQHS--DSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVSRHVNGIQASRADMII 461
+F + + +SE L GLAVAV+MDG+++FL+EIQALC S + HVNGIQ RADMII
Sbjct: 438 MFRRDHNGNFNSEHLTGLAVAVVMDGTQTFLLEIQALCSSSRSFDTHVNGIQNRRADMII 497
Query: 462 SVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGL 521
SVLMKQ GLKLQ + IF+NVVSGV LTETAGDLA+A AICSSFLE IPN IAFIGEIGL
Sbjct: 498 SVLMKQVGLKLQTSTIFINVVSGVTLTETAGDLAIAMAICSSFLESHIPNDIAFIGEIGL 557
Query: 522 GGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF- 580
GELRMV RMEKR++TVAKLG+++C+VPKSA L +G +M+ IGC NLK+VIN VF
Sbjct: 558 SGELRMVGRMEKRINTVAKLGFKRCVVPKSAVNCLGVVGLGEMKLIGCTNLKDVINNVFM 617
Query: 581 -----TTP 583
TTP
Sbjct: 618 VRDEVTTP 625
>gi|115466458|ref|NP_001056828.1| Os06g0151600 [Oryza sativa Japonica Group]
gi|53791424|dbj|BAD13707.2| RadA-like protein [Oryza sativa Japonica Group]
gi|55296625|dbj|BAD69327.1| putative RadA [Oryza sativa Japonica Group]
gi|55297278|dbj|BAD69063.1| putative RadA [Oryza sativa Japonica Group]
gi|113594868|dbj|BAF18742.1| Os06g0151600 [Oryza sativa Japonica Group]
gi|215736826|dbj|BAG95755.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 619
Score = 667 bits (1722), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/510 (66%), Positives = 406/510 (79%), Gaps = 16/510 (3%)
Query: 85 DFEKPQVKKKTNLGLGD--------LVG-TRKKGKANRTNWVCSDCGYTDGQWWGMCRAC 135
D E+ +V ++ + G+ D VG R K R ++VC +CG QWWG CR C
Sbjct: 108 DEERSKVGRRRSAGVKDEARWSSVAAVGKARGKAGKERASYVCGNCGEGFSQWWGTCRHC 167
Query: 136 ESVGTMKRYSAGESDEGPVVQ-----RTWLPQKPEEVQPVRLLEVNKGMKQLDWRIPLSG 190
E++GT+ +Y G SD G V R+W+PQK +E+ P L +V KG+ Q +WRIPLSG
Sbjct: 168 EAMGTLTKYVPG-SDPGASVGSHHAFRSWIPQKSKEMVPQSLQQVTKGVDQSEWRIPLSG 226
Query: 191 LFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE 250
FG E+ARVLGGG+VPGSL+L+GGDPGVGKS+L+LQ+A+I+++ GE S +VYVSGEE
Sbjct: 227 NFGMEIARVLGGGVVPGSLILVGGDPGVGKSSLILQLASIMSENIGAGESSAIVYVSGEE 286
Query: 251 SVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAG 310
S+EQIGNRADRM I + L+LYSSTDIEDI++K+QPLSPRALIIDSIQTVYLRG AGSAG
Sbjct: 287 SIEQIGNRADRMSIKSRNLYLYSSTDIEDILDKIQPLSPRALIIDSIQTVYLRGFAGSAG 346
Query: 311 GLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYR 370
+ QVKECTSALLRFAK TNIPV+L GHVTK+GDIAGPR+LEHIVD VLYMEGE+ S+R
Sbjct: 347 NMTQVKECTSALLRFAKLTNIPVILIGHVTKTGDIAGPRLLEHIVDVVLYMEGERCLSHR 406
Query: 371 LLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRS 430
LLRSVKNRFGSTDELGVFEMS GLQ V NP+++FL+E DSE LAGLAVAV++DGSR+
Sbjct: 407 LLRSVKNRFGSTDELGVFEMSGYGLQPVLNPTEMFLTEHDLDSEILAGLAVAVVLDGSRT 466
Query: 431 FLIEIQALCVSGSTVSRHVNGIQASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTET 490
F IE+QALCVSGS + V GI +RAD+IISVLMKQAGLKLQ+NA+FLNVVSG LTET
Sbjct: 467 FAIEVQALCVSGSPRNGEVVGIPRNRADIIISVLMKQAGLKLQDNAVFLNVVSGFMLTET 526
Query: 491 AGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPK 550
AGDLA+AA+ICSSFLE+PIPN IAFIGE+GLGGELR V RM+KRV +AKLGY+KC+VPK
Sbjct: 527 AGDLAIAASICSSFLEYPIPNDIAFIGEVGLGGELRTVPRMDKRVLAIAKLGYKKCVVPK 586
Query: 551 SAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
++EK L L E +E + C NLKEVIN VF
Sbjct: 587 TSEKLLRPLNLE-LEILPCSNLKEVINTVF 615
>gi|242092000|ref|XP_002436490.1| hypothetical protein SORBIDRAFT_10g003620 [Sorghum bicolor]
gi|241914713|gb|EER87857.1| hypothetical protein SORBIDRAFT_10g003620 [Sorghum bicolor]
Length = 673
Score = 666 bits (1718), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/486 (68%), Positives = 394/486 (81%), Gaps = 11/486 (2%)
Query: 106 RKKGKANR--TNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQ------- 156
R GK R ++VCS+CG + QWWG+CR C +VGT+ Y AG + G +
Sbjct: 186 RPAGKRGREKNSYVCSNCGEGNSQWWGICRHCGAVGTVVEYVAGSNSGGASAEGSHSHHI 245
Query: 157 -RTWLPQKPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGD 215
R+W+PQK +E+ P L EVNKG+ Q +WRIPL G FG E++RVLGGG+VPGSLVL+GGD
Sbjct: 246 GRSWIPQKAKEMVPQSLPEVNKGVDQAEWRIPLWGSFGMEISRVLGGGIVPGSLVLVGGD 305
Query: 216 PGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSST 275
PGVGKS+L+LQ+A+ I + E SPVVYVSGEES+EQIGNRADRM I + L+LYS T
Sbjct: 306 PGVGKSSLMLQLASNILEGFKAKESSPVVYVSGEESIEQIGNRADRMSITSSNLYLYSGT 365
Query: 276 DIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLL 335
DIEDI++K+QPLSP+ALIIDSIQTVY+R AGSAG L QVKECTSALLRFAK TNIPV L
Sbjct: 366 DIEDILDKIQPLSPKALIIDSIQTVYVRSFAGSAGNLSQVKECTSALLRFAKLTNIPVFL 425
Query: 336 AGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGL 395
GHVTK+GDIAGPR+LEHIVD VLYMEGE+ SS+RLLRSVKNRFGSTDELGVFEM++ GL
Sbjct: 426 IGHVTKTGDIAGPRLLEHIVDVVLYMEGERCSSHRLLRSVKNRFGSTDELGVFEMAEFGL 485
Query: 396 QAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVSRHVNGIQAS 455
QAV NPS++FL+E SDSE LAGLAVAVI+DGSR+F +E+QALCVSGS S V GI S
Sbjct: 486 QAVLNPSQMFLTEHDSDSEILAGLAVAVILDGSRTFALEVQALCVSGSHRSGQVVGIPPS 545
Query: 456 RADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAF 515
RAD+IISVLMKQAG+KLQ++ IFLNVVSG LTETAGDLA+AA+ICSSFLEFPIPN +AF
Sbjct: 546 RADVIISVLMKQAGVKLQDSTIFLNVVSGFKLTETAGDLAIAASICSSFLEFPIPNDVAF 605
Query: 516 IGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEV 575
IGE+GLGGELR V RM+KRV +AKLGY+KC+VPK++EK L L + +E + C NLK+V
Sbjct: 606 IGEVGLGGELRAVPRMDKRVMAIAKLGYKKCVVPKTSEKLLRPLDLD-IEILPCSNLKQV 664
Query: 576 INVVFT 581
IN VFT
Sbjct: 665 INTVFT 670
>gi|356557312|ref|XP_003546961.1| PREDICTED: DNA repair protein RadA homolog [Glycine max]
Length = 585
Score = 660 bits (1702), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/533 (63%), Positives = 407/533 (76%), Gaps = 18/533 (3%)
Query: 60 WSIYGSSIANGVPESSGNVNSQSSSDFEKPQVKKKTNLGLGDLVGTRKKGKAN-RTNWVC 118
WS+YG+ P + +N S D E P + V T+ KGK +T WVC
Sbjct: 57 WSMYGNVYDR--PIAQRELNDHSDGD-ENPSSGRAAK---SVAVVTKIKGKGKVKTQWVC 110
Query: 119 SDCGYTDGQWWGMCRACESVGTMKRY-----SAGESDEGPVVQRT----WLPQKPEEVQP 169
CG++ G+WWG C CE VGTM + + +S G V WLPQ+PE+++P
Sbjct: 111 CSCGHSTGKWWGQCPECEMVGTMNEFHESKLTDSKSRGGLEVSEDAVGLWLPQRPEDLRP 170
Query: 170 VRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAA 229
V+L EVN+G WRIPLSG FGNEV+ VLGGGLVPGSL L+GGDPG+GKSTLLLQ+AA
Sbjct: 171 VKLEEVNRGFNYQQWRIPLSGSFGNEVSTVLGGGLVPGSLTLVGGDPGIGKSTLLLQIAA 230
Query: 230 IIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSP 289
+IA+ E PVVYVSGEES++QIG RADR+ I + ++LYSSTDIEDI+ K LSP
Sbjct: 231 MIANECSDYEGPPVVYVSGEESLQQIGIRADRLGIKSN-IYLYSSTDIEDILTKTHGLSP 289
Query: 290 RALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPR 349
RAL++DSIQTVYL+ + GSAGG+MQVKECT+AL+RFAK TNI V L GHVTKSGDIAGPR
Sbjct: 290 RALVVDSIQTVYLKTIIGSAGGIMQVKECTAALMRFAKTTNISVFLIGHVTKSGDIAGPR 349
Query: 350 VLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQ 409
VLEHIVD VLYMEGEK+S YR+LR+VKNRFGSTDEL V EMSQ GLQ VSN S++FL++Q
Sbjct: 350 VLEHIVDVVLYMEGEKYSPYRMLRAVKNRFGSTDELAVLEMSQSGLQVVSNASEMFLTQQ 409
Query: 410 HSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVSRHV-NGIQASRADMIISVLMKQA 468
HSDS LAGLA+AVIMDGSR+FLIEIQALC++ VS + NGI A++A++I VL+KQ
Sbjct: 410 HSDSNVLAGLAIAVIMDGSRTFLIEIQALCLTHCPVSSSLSNGINANKANIIKCVLIKQT 469
Query: 469 GLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMV 528
GL LQ+NA+FLNVVSG+ +TETAGDLA+AAAICSSFLEFPIP G AFIGEIGLGGELRMV
Sbjct: 470 GLHLQDNAVFLNVVSGMTVTETAGDLAIAAAICSSFLEFPIPEGTAFIGEIGLGGELRMV 529
Query: 529 SRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVFT 581
R+EKRV+T+ KLGYR C+VPK AEK L T G +M+ +GCK+LKEVIN VF+
Sbjct: 530 PRIEKRVNTLVKLGYRMCVVPKQAEKLLETEGLGKMKVVGCKDLKEVINAVFS 582
>gi|413942867|gb|AFW75516.1| hypothetical protein ZEAMMB73_801953 [Zea mays]
Length = 648
Score = 659 bits (1701), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/564 (60%), Positives = 418/564 (74%), Gaps = 36/564 (6%)
Query: 52 ESQTVPPVWSIY----GSSIANGVPESSGNVNSQSSS---------DFEKPQVKKK---- 94
E V W +Y G + G P S ++ + + EK VK+K
Sbjct: 82 EPPAVSDAWGVYDPVLGRIVKQGSPPPSSSITVEEDDEEGEEAGKLEEEKAGVKEKGKRR 141
Query: 95 -TNLGLGDLV------GTRK---KGKANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRY 144
T +G+ D V R+ KG R+++VCS+CG D QWWG CR C ++GT+ +Y
Sbjct: 142 VTAVGVNDHVRWSSVAAARRPAGKGGKERSSYVCSNCGEGDSQWWGKCRHCNAMGTVDKY 201
Query: 145 S--AGESDEGPVVQ------RTWLPQKPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEV 196
AG G V+ R+W+PQK +EV P L EVNKG+ Q WRIPL G FG E+
Sbjct: 202 VGVAGPESGGVDVEWSHHIGRSWMPQKAKEVVPQSLQEVNKGVDQAQWRIPLWGSFGMEI 261
Query: 197 ARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIG 256
+RVLGGG+VPGSL+L+GGDPGVGKS+L+LQ+A+ I + E SPVVYVSGEES+EQIG
Sbjct: 262 SRVLGGGIVPGSLILVGGDPGVGKSSLMLQLASNILEGFKAKESSPVVYVSGEESIEQIG 321
Query: 257 NRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVK 316
NRADRM I + L+LYS TDIEDI++K+QPLSPRALIIDSIQTVY+R AGSAG L QVK
Sbjct: 322 NRADRMSITSSNLYLYSGTDIEDILDKIQPLSPRALIIDSIQTVYVRSFAGSAGNLSQVK 381
Query: 317 ECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVK 376
ECTSALLRFAK TNIPV L GHVTK+GDIAGPR+LEHIVD VLYMEGE+ SS+RLLRSVK
Sbjct: 382 ECTSALLRFAKLTNIPVFLIGHVTKTGDIAGPRLLEHIVDVVLYMEGERCSSHRLLRSVK 441
Query: 377 NRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQ 436
NRFGS DELGVFEM++ GLQAV NPS++FL+E SDSE +AGLAVAVI+DGSR+F +E+Q
Sbjct: 442 NRFGSADELGVFEMAEFGLQAVLNPSQMFLTEHDSDSEIMAGLAVAVILDGSRTFALEVQ 501
Query: 437 ALCVSGSTVSRHVNGIQASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAV 496
ALCVSG S V GI SRAD+IISVL+KQAGLKLQ+N +FLNVVSG LTETAGDLA+
Sbjct: 502 ALCVSGYHRSGQVVGIPQSRADVIISVLIKQAGLKLQDNIVFLNVVSGFKLTETAGDLAI 561
Query: 497 AAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSL 556
AA+ICSSFLEFPIPN +AFIGE+GLGGELR V RM+KRV ++KLGY+KC+VPK++EK L
Sbjct: 562 AASICSSFLEFPIPNDVAFIGEVGLGGELRTVPRMDKRVIAISKLGYKKCVVPKTSEKLL 621
Query: 557 ATLGFEQMEFIGCKNLKEVINVVF 580
L + +E + C NLK++IN VF
Sbjct: 622 RPLDID-IEILPCSNLKQLINTVF 644
>gi|293333824|ref|NP_001170708.1| uncharacterized protein LOC100384790 [Zea mays]
gi|238007076|gb|ACR34573.1| unknown [Zea mays]
Length = 641
Score = 659 bits (1699), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/564 (60%), Positives = 418/564 (74%), Gaps = 36/564 (6%)
Query: 52 ESQTVPPVWSIY----GSSIANGVPESSGNVNSQSSS---------DFEKPQVKKK---- 94
E V W +Y G + G P S ++ + + EK VK+K
Sbjct: 75 EPPAVSDAWGVYDPVLGRIVKQGSPPPSSSITVEEDDEEGEEAGKLEEEKAGVKEKGKRR 134
Query: 95 -TNLGLGDLV------GTRK---KGKANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRY 144
T +G+ D V R+ KG R+++VCS+CG D QWWG CR C ++GT+ +Y
Sbjct: 135 VTAVGVNDHVRWSSVAAARRPAGKGGKERSSYVCSNCGEGDSQWWGKCRHCNAMGTVDKY 194
Query: 145 S--AGESDEGPVVQ------RTWLPQKPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEV 196
AG G V+ R+W+PQK +EV P L EVNKG+ Q WRIPL G FG E+
Sbjct: 195 VGVAGPESGGVDVEWSHHIGRSWMPQKAKEVVPQSLQEVNKGVDQAQWRIPLWGSFGMEI 254
Query: 197 ARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIG 256
+RVLGGG+VPGSL+L+GGDPGVGKS+L+LQ+A+ I + E SPVVYVSGEES+EQIG
Sbjct: 255 SRVLGGGIVPGSLILVGGDPGVGKSSLMLQLASNILEGFKAKESSPVVYVSGEESIEQIG 314
Query: 257 NRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVK 316
NRADRM I + L+LYS TDIEDI++K+QPLSPRALIIDSIQTVY+R AGSAG L QVK
Sbjct: 315 NRADRMSITSSNLYLYSGTDIEDILDKIQPLSPRALIIDSIQTVYVRSFAGSAGNLSQVK 374
Query: 317 ECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVK 376
ECTSALLRFAK TNIPV L GHVTK+GDIAGPR+LEHIVD VLYMEGE+ SS+RLLRSVK
Sbjct: 375 ECTSALLRFAKLTNIPVFLIGHVTKTGDIAGPRLLEHIVDVVLYMEGERCSSHRLLRSVK 434
Query: 377 NRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQ 436
NRFGS DELGVFEM++ GLQAV NPS++FL+E SDSE +AGLAVAVI+DGSR+F +E+Q
Sbjct: 435 NRFGSADELGVFEMAEFGLQAVLNPSQMFLTEHDSDSEIMAGLAVAVILDGSRTFALEVQ 494
Query: 437 ALCVSGSTVSRHVNGIQASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAV 496
ALCVSG S V GI SRAD+IISVL+KQAGLKLQ+N +FLNVVSG LTETAGDLA+
Sbjct: 495 ALCVSGYHRSGQVVGIPQSRADVIISVLIKQAGLKLQDNIVFLNVVSGFKLTETAGDLAI 554
Query: 497 AAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSL 556
AA+ICSSFLEFPIPN +AFIGE+GLGGELR V RM+KRV ++KLGY+KC+VPK++EK L
Sbjct: 555 AASICSSFLEFPIPNDVAFIGEVGLGGELRTVPRMDKRVIAISKLGYKKCVVPKTSEKLL 614
Query: 557 ATLGFEQMEFIGCKNLKEVINVVF 580
L + +E + C NLK++IN VF
Sbjct: 615 RPLDID-IEILPCSNLKQLINTVF 637
>gi|357119189|ref|XP_003561328.1| PREDICTED: DNA repair protein RadA homolog [Brachypodium
distachyon]
Length = 629
Score = 651 bits (1680), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/480 (68%), Positives = 389/480 (81%), Gaps = 10/480 (2%)
Query: 108 KGKANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRY-------SAGESDEGPVVQRTWL 160
K + ++VCS+CG QWWG+C C++ GT+ +Y A E++ V R+W+
Sbjct: 149 KAAKAKVSYVCSNCGEGSSQWWGVCCHCKA-GTLTKYVVPPEHDYAPEAEGSHHVIRSWI 207
Query: 161 PQKPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGK 220
PQK +E+ P L +V KG Q +WRIPL G FG E+ARVLGGG+VPGSLVL+GGDPGVGK
Sbjct: 208 PQKSKEMVPQSLRDVTKGFGQAEWRIPLPGNFGMEIARVLGGGIVPGSLVLVGGDPGVGK 267
Query: 221 STLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDI 280
S+L+LQ+A+I++D E SPVVYVSGEES+EQIGNRADRM I ++ L+LYSSTDIEDI
Sbjct: 268 SSLMLQLASIVSDGSVDDESSPVVYVSGEESIEQIGNRADRMSIRSKNLYLYSSTDIEDI 327
Query: 281 VEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVT 340
++K+QPLSPRALI+DSIQTVYLR AGSAG QVKECTSALL FAK TNIPV L GHVT
Sbjct: 328 LDKIQPLSPRALIVDSIQTVYLRAFAGSAGNQTQVKECTSALLSFAKLTNIPVFLIGHVT 387
Query: 341 KSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSN 400
K+GDIAGPR+LEHIVD VLYMEGE+ S+RLLRSVKNRFGSTDELGVFEMS+ GLQAV N
Sbjct: 388 KTGDIAGPRILEHIVDVVLYMEGERCLSHRLLRSVKNRFGSTDELGVFEMSENGLQAVLN 447
Query: 401 PSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVSRHVNGIQASRADMI 460
PS++FL++ SDSE LAGLAVAV++DGSR+F IE+QALCVSGS S V GI +SRAD+I
Sbjct: 448 PSEMFLTQHDSDSEILAGLAVAVVLDGSRAFAIEVQALCVSGSR-SGQVVGIPSSRADVI 506
Query: 461 ISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIG 520
ISVLMKQAGLKL ++ IFLNVVSG L ETAGDLA+AA+ICSSFLEFPIPN IAFIGEIG
Sbjct: 507 ISVLMKQAGLKLDDSTIFLNVVSGFKLKETAGDLAIAASICSSFLEFPIPNDIAFIGEIG 566
Query: 521 LGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
LGGELR V RM+KRV +AKLGYRKC+VPK++EK L L + +E + C NLKEVIN+VF
Sbjct: 567 LGGELRTVPRMDKRVIAIAKLGYRKCVVPKTSEKLLKPLNLD-IEILPCNNLKEVINIVF 625
>gi|125554112|gb|EAY99717.1| hypothetical protein OsI_21700 [Oryza sativa Indica Group]
Length = 625
Score = 613 bits (1582), Expect = e-173, Method: Compositional matrix adjust.
Identities = 319/518 (61%), Positives = 391/518 (75%), Gaps = 26/518 (5%)
Query: 85 DFEKPQVKKKTNLGLGD--------LVG-TRKKGKANRTNWVCSDCGYTDGQWWGMCRAC 135
D E+ +V ++ + G+ D VG R K R ++VC +CG QWWG CR C
Sbjct: 108 DEERSKVGRRRSAGVKDEARWSSVAAVGKARGKAGKERASYVCGNCGEGFSQWWGTCRHC 167
Query: 136 ESVGTMKRYSAGESDEGPVVQ-----RTWLPQKPEEVQPVRLLEVNKGMKQLDWRIPLSG 190
E++GT+ +Y G SD G V R+W+PQK +E+ P L +V KG+ Q +WRIPLSG
Sbjct: 168 EAMGTLTKYVPG-SDPGASVGSHHAFRSWIPQKSKEMVPQSLQQVTKGVDQSEWRIPLSG 226
Query: 191 LFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE 250
FG E+ARVLGGG+VPGSL+L+GGDPGVGKS+L+LQ+A+I+++ GE S VVYVSGEE
Sbjct: 227 NFGMEIARVLGGGVVPGSLILVGGDPGVGKSSLILQLASIMSENIGAGESSAVVYVSGEE 286
Query: 251 SVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAG 310
S+EQIGNRADRM I + L+LYSSTDIEDI++K+QPLSPRALIIDSIQTVYLRG AGSAG
Sbjct: 287 SIEQIGNRADRMSIKSRNLYLYSSTDIEDILDKIQPLSPRALIIDSIQTVYLRGFAGSAG 346
Query: 311 GLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEK----- 365
+ QVKECTSALLRFAK TNIPV+L GHVTK+GDIAGPR+LEHIVD VLYME EK
Sbjct: 347 NMTQVKECTSALLRFAKLTNIPVILIGHVTKTGDIAGPRLLEHIVDVVLYMEVEKPNRKF 406
Query: 366 ---FSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVA 422
S +L + + +++ F GLQ V NP+++FL+E SDSE LAGLAVA
Sbjct: 407 GACISGREML--ISSVVAISEKSFRFNRRGYGLQPVLNPTEMFLTEHDSDSEILAGLAVA 464
Query: 423 VIMDGSRSFLIEIQALCVSGSTVSRHVNGIQASRADMIISVLMKQAGLKLQENAIFLNVV 482
V++DGSR+F IE+QALCVSGS + V GI +RAD+IISVLMKQAGLKLQ+NA+FLNVV
Sbjct: 465 VVLDGSRTFAIEVQALCVSGSPRNGEVVGIPRNRADIIISVLMKQAGLKLQDNAVFLNVV 524
Query: 483 SGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLG 542
SG LTETAGDLA+AA+ICSSFLE+PIPN IAFIGE+GLGGELR V RM+KRV +AKLG
Sbjct: 525 SGFMLTETAGDLAIAASICSSFLEYPIPNDIAFIGEVGLGGELRTVPRMDKRVLAIAKLG 584
Query: 543 YRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
Y+KC+VPK++EK L L E +E + C NLKEVIN VF
Sbjct: 585 YKKCVVPKTSEKLLRPLNLE-LEILPCSNLKEVINTVF 621
>gi|125596069|gb|EAZ35849.1| hypothetical protein OsJ_20147 [Oryza sativa Japonica Group]
Length = 625
Score = 611 bits (1575), Expect = e-172, Method: Compositional matrix adjust.
Identities = 317/518 (61%), Positives = 390/518 (75%), Gaps = 26/518 (5%)
Query: 85 DFEKPQVKKKTNLGLGD--------LVG-TRKKGKANRTNWVCSDCGYTDGQWWGMCRAC 135
D E+ +V ++ + G+ D VG R K R ++VC +CG QWWG CR C
Sbjct: 108 DEERSKVGRRRSAGVKDEARWSSVAAVGKARGKAGKERASYVCGNCGEGFSQWWGTCRHC 167
Query: 136 ESVGTMKRYSAGESDEGPVVQ-----RTWLPQKPEEVQPVRLLEVNKGMKQLDWRIPLSG 190
E++GT+ +Y G SD G V R+W+PQK +E+ P L +V KG+ Q +WRIPLSG
Sbjct: 168 EAMGTLTKYVPG-SDPGASVGSHHAFRSWIPQKSKEMVPQSLQQVTKGVDQSEWRIPLSG 226
Query: 191 LFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE 250
FG E+ARVLGGG+VPGSL+L+GGDPGVGKS+L+LQ+A+I+++ GE S +VYVSGEE
Sbjct: 227 NFGMEIARVLGGGVVPGSLILVGGDPGVGKSSLILQLASIMSENIGAGESSAIVYVSGEE 286
Query: 251 SVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAG 310
S+EQIGNRADRM I + L+LYSSTDIEDI++K+QPLSPRALIIDSIQTVYLRG AGSAG
Sbjct: 287 SIEQIGNRADRMSIKSRNLYLYSSTDIEDILDKIQPLSPRALIIDSIQTVYLRGFAGSAG 346
Query: 311 GLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEK----- 365
+ QVKECTSALLRFAK TNIPV+L GHVTK+GDIAGPR+LEHIVD VLYME EK
Sbjct: 347 NMTQVKECTSALLRFAKLTNIPVILIGHVTKTGDIAGPRLLEHIVDVVLYMEVEKPNRKF 406
Query: 366 ---FSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVA 422
S +L + + +++ F GLQ V NP+++FL+E DSE LAGLAVA
Sbjct: 407 GACISGREML--ISSVVAISEKSFRFNRRGYGLQPVLNPTEMFLTEHDLDSEILAGLAVA 464
Query: 423 VIMDGSRSFLIEIQALCVSGSTVSRHVNGIQASRADMIISVLMKQAGLKLQENAIFLNVV 482
V++DGSR+F IE+QALCVSGS + V GI +RAD+IISVLMKQAGLKLQ+NA+FLNVV
Sbjct: 465 VVLDGSRTFAIEVQALCVSGSPRNGEVVGIPRNRADIIISVLMKQAGLKLQDNAVFLNVV 524
Query: 483 SGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLG 542
SG LTETAGDLA+AA+ICSSFLE+PIPN IAFIGE+GLGGELR V RM+KRV +AKLG
Sbjct: 525 SGFMLTETAGDLAIAASICSSFLEYPIPNDIAFIGEVGLGGELRTVPRMDKRVLAIAKLG 584
Query: 543 YRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
Y+KC+VPK++EK L L E +E + C NLKEVIN VF
Sbjct: 585 YKKCVVPKTSEKLLRPLNLE-LEILPCSNLKEVINTVF 621
>gi|357454751|ref|XP_003597656.1| DNA repair protein radA-like protein [Medicago truncatula]
gi|355486704|gb|AES67907.1| DNA repair protein radA-like protein [Medicago truncatula]
Length = 646
Score = 607 bits (1564), Expect = e-171, Method: Compositional matrix adjust.
Identities = 330/640 (51%), Positives = 415/640 (64%), Gaps = 81/640 (12%)
Query: 13 FHSPKQFLPLFNRTHFLSRQFPQFSRQFHSTTLRLCSAGESQTVPPVWSIYGSSIANGVP 72
F +PK+ + S P+ + HS + Q WS+YG+ IA
Sbjct: 16 FLNPKRVFSSLLSPNPSSTTTPEDTETLHSNE-------KPQKPTNTWSMYGNVIA--TK 66
Query: 73 ESSGNVNSQSSSDFEKP---------QVKKKTNLGLGDLVGT--RKKGKANRTNWVCSDC 121
+ N N + EKP +K KT T ++ K +T WVC +C
Sbjct: 67 QKINNHNEDDETKEEKPTESENGSMMNLKNKTIFKTAATTVTVDKRSTKKVKTQWVCCNC 126
Query: 122 GYTDGQWWGMCRACESVGTMKRYSAGESDEG-------------PVVQRTWLPQKPEEVQ 168
GYT GQWWG C +C VGTMK + + +G V WLPQ+ +++
Sbjct: 127 GYTAGQWWGTCPSCTMVGTMKEFHEAKLGDGIDSNKVRTGLSVSEDVMGAWLPQRGDQLH 186
Query: 169 PVRLLEVNKGMKQLDWRIPLSGLFGNEVA------------RVLGG-------------- 202
PV+L EVN+G + WR PLSG FG+EV+ R G
Sbjct: 187 PVKLSEVNRGFDEKGWRFPLSGPFGDEVSIVLGGGLVPGLLRWFGHVKKRLVDSIVRRVD 246
Query: 203 ---------------GLVPGSLVLIGGDPGVGKSTLLLQMAAIIAD-VHDL-GEPSPVVY 245
+ SL L+ GDPGVGKSTLLLQMAA+IAD +D GE PVVY
Sbjct: 247 QMEGSQITRRGKSRKTIRERSLNLVSGDPGVGKSTLLLQMAALIADGCNDSDGEALPVVY 306
Query: 246 VSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGV 305
VSGEES++QIG+RA R+ I ++ ++LYSSTDIEDI+ Q RAL++DSIQTVYL+G+
Sbjct: 307 VSGEESLQQIGHRAGRLGINSD-IYLYSSTDIEDIIRIAQSFPIRALVVDSIQTVYLKGI 365
Query: 306 AGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEK 365
AGSAGG++QVKECTSAL+RFAK TNIPVLL GHVTKSGDIAGPRVLEHIVD VLY+EGE+
Sbjct: 366 AGSAGGIVQVKECTSALMRFAKTTNIPVLLIGHVTKSGDIAGPRVLEHIVDVVLYLEGER 425
Query: 366 FSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIM 425
F+SYR+LR+VKNRFGSTDELGVFEMS+ G +AVSN +++FL+EQ +DS+ L GLA VIM
Sbjct: 426 FTSYRMLRAVKNRFGSTDELGVFEMSESGFKAVSNATEMFLTEQDADSDVLVGLAFTVIM 485
Query: 426 DGSRSFLIEIQALCVS----GSTVSRHVNGIQASRADMIISVLMKQAGLKLQENAIFLNV 481
DGSR+F+IE+QALC+S G + SR VNGI RA+MI VL+KQAGL + N++ LNV
Sbjct: 486 DGSRTFIIEVQALCLSQSPVGGSTSRVVNGIDTDRANMIKCVLIKQAGLHIPVNSVHLNV 545
Query: 482 VSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKL 541
VSG+ +TETAGDLA+AAAICSSFLE+PIP GIAFIGEIGL GELR V R++KRV +AKL
Sbjct: 546 VSGLKMTETAGDLAIAAAICSSFLEYPIPKGIAFIGEIGLSGELRTVPRIDKRVHALAKL 605
Query: 542 GYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVFT 581
GY+ C+VPK A K+L T G E ++ +GCKNLKE IN VF+
Sbjct: 606 GYKTCVVPKQALKALGTEGLENIKVVGCKNLKEFINAVFS 645
>gi|413942866|gb|AFW75515.1| hypothetical protein ZEAMMB73_801953 [Zea mays]
Length = 548
Score = 515 bits (1327), Expect = e-143, Method: Compositional matrix adjust.
Identities = 276/465 (59%), Positives = 334/465 (71%), Gaps = 37/465 (7%)
Query: 52 ESQTVPPVWSIY----GSSIANGVPESSGNVNSQSSS---------DFEKPQVKKK---- 94
E V W +Y G + G P S ++ + + EK VK+K
Sbjct: 82 EPPAVSDAWGVYDPVLGRIVKQGSPPPSSSITVEEDDEEGEEAGKLEEEKAGVKEKGKRR 141
Query: 95 -TNLGLGDLV------GTRK---KGKANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRY 144
T +G+ D V R+ KG R+++VCS+CG D QWWG CR C ++GT+ +Y
Sbjct: 142 VTAVGVNDHVRWSSVAAARRPAGKGGKERSSYVCSNCGEGDSQWWGKCRHCNAMGTVDKY 201
Query: 145 S--AGESDEGPVVQ------RTWLPQKPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEV 196
AG G V+ R+W+PQK +EV P L EVNKG+ Q WRIPL G FG E+
Sbjct: 202 VGVAGPESGGVDVEWSHHIGRSWMPQKAKEVVPQSLQEVNKGVDQAQWRIPLWGSFGMEI 261
Query: 197 ARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIG 256
+RVLGGG+VPGSL+L+GGDPGVGKS+L+LQ+A+ I + E SPVVYVSGEES+EQIG
Sbjct: 262 SRVLGGGIVPGSLILVGGDPGVGKSSLMLQLASNILEGFKAKESSPVVYVSGEESIEQIG 321
Query: 257 NRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVK 316
NRADRM I + L+LYS TDIEDI++K+QPLSPRALIIDSIQTVY+R AGSAG L QVK
Sbjct: 322 NRADRMSITSSNLYLYSGTDIEDILDKIQPLSPRALIIDSIQTVYVRSFAGSAGNLSQVK 381
Query: 317 ECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVK 376
ECTSALLRFAK TNIPV L GHVTK+GDIAGPR+LEHIVD VLYMEGE+ SS+RLLRSVK
Sbjct: 382 ECTSALLRFAKLTNIPVFLIGHVTKTGDIAGPRLLEHIVDVVLYMEGERCSSHRLLRSVK 441
Query: 377 NRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQ 436
NRFGS DELGVFEM++ GLQAV NPS++FL+E SDSE +AGLAVAVI+DGSR+F +E+Q
Sbjct: 442 NRFGSADELGVFEMAEFGLQAVLNPSQMFLTEHDSDSEIMAGLAVAVILDGSRTFALEVQ 501
Query: 437 ALCVSGSTVSRHVNGIQASRADMIISVLMKQAGLKLQENAIFLNV 481
ALCVSG S V GI SRAD+IISVL+KQAGLKLQ+N FL +
Sbjct: 502 ALCVSGYHRSGQVVGIPQSRADVIISVLIKQAGLKLQDN--FLGI 544
>gi|168009770|ref|XP_001757578.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691272|gb|EDQ77635.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 610
Score = 482 bits (1241), Expect = e-133, Method: Compositional matrix adjust.
Identities = 270/538 (50%), Positives = 348/538 (64%), Gaps = 38/538 (7%)
Query: 74 SSGNV--NSQSSSDFEKPQVKKKTNLGLGDLVGT-RKKGKA-NRTNWVCSDCGYTDGQWW 129
+SGN+ + QS DF +K G D G RKK A +T+WVC DCG + QWW
Sbjct: 77 TSGNLLFSRQSCIDFRFVAKRKIFACGSRDFTGIGRKKAVAKTKTHWVCEDCGESYTQWW 136
Query: 130 GMCRACESVGTMKRYSAGESDEGP-------VVQRTWLPQKPEEVQ-------------- 168
G CR C+++ +MK + + G V+ L Q V+
Sbjct: 137 GQCRNCKAMNSMKEFKEHTGNAGKRGGAGARAVENLVLSQANGTVKKSPRAGGRAWLESV 196
Query: 169 ---PVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLL 225
P RL +V G QL WR+PL G G E+ RVLGGGLVPGSL+L+GGDPGVGKSTLLL
Sbjct: 197 GGGPQRLSDVAAGHSQLHWRLPLQGDTGQEIGRVLGGGLVPGSLILVGGDPGVGKSTLLL 256
Query: 226 QMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQ 285
Q D P PV+YVSGEESVEQI NRADR+ I ELFLYS+TD+E ++ +
Sbjct: 257 QGT-------DEQGPGPVLYVSGEESVEQISNRADRLNITAHELFLYSATDLELVIGSIT 309
Query: 286 PLSPRALIIDSIQTVYLRGVAGSAGGL-MQVKECTSALLRFAKKTNIPVLLAGHVTKSGD 344
+ PRA+I+DSIQTVYL GSAG + QV+EC +ALLR AK+T IP+ L GHVTK GD
Sbjct: 310 EIQPRAVIVDSIQTVYLAEANGSAGSVSQQVRECATALLRAAKETKIPIFLVGHVTKGGD 369
Query: 345 IAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKI 404
IAGP++LEH+VD VLYMEGE+ S+RLLR VKNR+GSTDE+GVFEM Q GL AV++PS++
Sbjct: 370 IAGPKILEHVVDVVLYMEGERLQSHRLLRVVKNRYGSTDEVGVFEMVQEGLAAVASPSEL 429
Query: 405 FLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIIS 462
FLS ++ + A AVAV M+GSR L+E+QAL V R NG+ A R ++++
Sbjct: 430 FLSARNENLTNAASAAVAVTMEGSRPILLEVQALTSSVGQQPGRRTANGVDAQRLSLLLA 489
Query: 463 VLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLG 522
VL+KQA L+L +F+NVV G+ L E A D+A+A AICSS+ E + +AFIGEIGLG
Sbjct: 490 VLVKQASLRLSNQDVFINVVGGLQLREPAADVAIAVAICSSYFEKAVDREMAFIGEIGLG 549
Query: 523 GELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
GELR V +ME+R+ AKLG++KC+VP+SA K+L L I C ++KEVI +F
Sbjct: 550 GELRSVGQMERRLLEAAKLGFKKCVVPRSAAKTLKGLAGAAFVTIPCADIKEVIEKLF 607
>gi|302789590|ref|XP_002976563.1| hypothetical protein SELMODRAFT_105715 [Selaginella moellendorffii]
gi|300155601|gb|EFJ22232.1| hypothetical protein SELMODRAFT_105715 [Selaginella moellendorffii]
Length = 588
Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust.
Identities = 233/482 (48%), Positives = 321/482 (66%), Gaps = 25/482 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYS---------AGESDEGPVVQRTWLPQK 163
+ +VC +CG +W G C C ++K ++ G V+ L +
Sbjct: 76 KHGFVCENCGTIHAKWHGFCNQCRQANSLKEFTNVVSSGSSGGGGGAGARAVEGVGLADR 135
Query: 164 PE--EVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKS 221
E++P RL E+ L WR+ L G G+E+ARVLGGGLVPGSL+L+ GDPGVGKS
Sbjct: 136 ATKAELKPQRLAEITASKNHLHWRLSLPGKTGSEIARVLGGGLVPGSLILVSGDPGVGKS 195
Query: 222 TLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIV 281
TLLLQ V E +PV+Y+SGEESVEQIGNRA+R+ I + E+F+ S+TD++ ++
Sbjct: 196 TLLLQ-------VFGADEAAPVLYISGEESVEQIGNRAERLKIESNEIFILSATDLDVVL 248
Query: 282 EKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTK 341
+Q + PRA+++DSIQTVYL +GSAG + QV+ECTSALLR AKKTN + L GHVTK
Sbjct: 249 TWIQEIVPRAVVLDSIQTVYLPDASGSAGSISQVRECTSALLRVAKKTNTAIFLIGHVTK 308
Query: 342 SGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNP 401
SG+IAGPR LEH+VD L++EG++ S RLLRS+KNRFGST E+GVFEM GL+AV NP
Sbjct: 309 SGEIAGPRTLEHMVDVCLHLEGDRLLSQRLLRSLKNRFGSTKEVGVFEMVDNGLRAVENP 368
Query: 402 SKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTV--SRHVNGIQASRADM 459
S +FLS++ + A V V ++GSR L+EIQALC +++ R G+ SR ++
Sbjct: 369 SLMFLSDRTGEDSN-ASATVGVALEGSRPLLVEIQALCSPATSLPSKRTFTGVDPSRFNL 427
Query: 460 IISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEI 519
I++VL+KQA L+L IF+NVV G L E A D+AVA AI SS++E P+P F+GE+
Sbjct: 428 IVAVLLKQARLRLARQDIFVNVVGGFRLEEPATDIAVAVAIASSYIERPVPRDTVFVGEL 487
Query: 520 GLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVV 579
GLGGELR V+++E+R+ +KLG++KCIVP+ A+ + + ME I C +LK+V+ V
Sbjct: 488 GLGGELRFVTQLERRLFEASKLGFKKCIVPQGAK----GVKVDGMELILCSSLKDVLEKV 543
Query: 580 FT 581
F
Sbjct: 544 FN 545
>gi|302782752|ref|XP_002973149.1| hypothetical protein SELMODRAFT_98813 [Selaginella moellendorffii]
gi|300158902|gb|EFJ25523.1| hypothetical protein SELMODRAFT_98813 [Selaginella moellendorffii]
Length = 588
Score = 433 bits (1114), Expect = e-118, Method: Compositional matrix adjust.
Identities = 233/482 (48%), Positives = 321/482 (66%), Gaps = 25/482 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYS---------AGESDEGPVVQRTWLPQK 163
+ +VC +CG +W G C C ++K ++ G V+ L +
Sbjct: 76 KHGFVCENCGTIHAKWHGFCNQCRQANSLKEFTNVVSSGSSGGGGGAGARAVEGVGLADR 135
Query: 164 PE--EVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKS 221
E++P RL E+ L WR+ L G G+E+ARVLGGGLVPGSL+L+ GDPGVGKS
Sbjct: 136 ATKAELKPQRLAEITASKNHLHWRLSLPGKTGSEIARVLGGGLVPGSLILVSGDPGVGKS 195
Query: 222 TLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIV 281
TLLLQ V E +PV+Y+SGEESVEQIGNRA+R+ I + E+F+ S+TD++ ++
Sbjct: 196 TLLLQ-------VFGADEAAPVLYISGEESVEQIGNRAERLKIESNEIFILSATDLDVVL 248
Query: 282 EKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTK 341
+Q + PRA+++DSIQTVYL +GSAG + QV+ECTSALLR AKKTN + L GHVTK
Sbjct: 249 TWIQEIVPRAVVLDSIQTVYLPDASGSAGSISQVRECTSALLRVAKKTNTAIFLIGHVTK 308
Query: 342 SGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNP 401
SG+IAGPR LEH+VD L++EG++ S RLLRS+KNRFGST E+GVFEM GL+AV NP
Sbjct: 309 SGEIAGPRTLEHMVDVCLHLEGDRLLSQRLLRSLKNRFGSTKEVGVFEMVDNGLRAVENP 368
Query: 402 SKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTV--SRHVNGIQASRADM 459
S +FLS++ + A V V ++GSR L+EIQALC +++ R G+ SR ++
Sbjct: 369 SLMFLSDRTGEDSN-ASATVGVALEGSRPLLVEIQALCSPATSLPSKRTFTGVDPSRFNL 427
Query: 460 IISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEI 519
I++VL+KQA L+L IF+NVV G L E A D+AVA AI SS++E P+P F+GE+
Sbjct: 428 IVAVLLKQARLRLARQDIFVNVVGGFRLEEPATDIAVAVAIASSYIERPVPRDTVFVGEL 487
Query: 520 GLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVV 579
GLGGELR V+++E+R+ +KLG++KCIVP+ A+ + + ME I C +LK+V+ V
Sbjct: 488 GLGGELRFVTQLERRLFEASKLGFKKCIVPQGAKG----VKVDGMELILCSSLKDVLEKV 543
Query: 580 FT 581
F
Sbjct: 544 FN 545
>gi|297743167|emb|CBI36034.3| unnamed protein product [Vitis vinifera]
Length = 545
Score = 432 bits (1112), Expect = e-118, Method: Compositional matrix adjust.
Identities = 218/284 (76%), Positives = 244/284 (85%), Gaps = 11/284 (3%)
Query: 141 MKRYSAGESDEG----------PVVQRTWLPQKPEEVQPVRLLEVNKGMKQLDWRIPLSG 190
MK++S GES G V R+WLPQ+P E QP RL +VN+G+ QL+WRIPL G
Sbjct: 1 MKQFSEGESGIGGWRASGFEVSENVVRSWLPQQPTETQPQRLTDVNRGINQLNWRIPLHG 60
Query: 191 LFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEE 250
FG+EVARVLGGGLVPGSLVL+GGDPG GKSTLLLQ+AAIIA+ HD SPVVYVSGEE
Sbjct: 61 PFGSEVARVLGGGLVPGSLVLVGGDPGAGKSTLLLQIAAIIAEGHD-DRSSPVVYVSGEE 119
Query: 251 SVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAG 310
SVEQIGNRADRM I TE+LFLYSSTDIEDI+ +V LSPRAL++DSIQTVYL+GV GSAG
Sbjct: 120 SVEQIGNRADRMRIETEDLFLYSSTDIEDILGQVHHLSPRALVVDSIQTVYLKGVTGSAG 179
Query: 311 GLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYR 370
GL+QVKECTSALLRFAKKTNIPV L GHVTKSGDIAGPRVLEHIVD VLY+EGEK SS+R
Sbjct: 180 GLLQVKECTSALLRFAKKTNIPVFLIGHVTKSGDIAGPRVLEHIVDVVLYIEGEKHSSHR 239
Query: 371 LLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSE 414
LLRSVKNRFGSTDELGVFEM+QLGLQ VSNPS++FLSE++SDSE
Sbjct: 240 LLRSVKNRFGSTDELGVFEMTQLGLQVVSNPSELFLSERNSDSE 283
Score = 257 bits (656), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 132/183 (72%), Positives = 149/183 (81%), Gaps = 2/183 (1%)
Query: 400 NPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVSRHVNGIQA--SRA 457
N +K+ + LAGLAVAVIMDGSRSFL+EIQALC+SG +R V G+ RA
Sbjct: 362 NATKVITINGQQSTLILAGLAVAVIMDGSRSFLLEIQALCLSGIIFARQVKGVPVPVRRA 421
Query: 458 DMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIG 517
+MII VLMKQAGLKLQEN IFLNVVSGV L ETAGDLAVAAAICSSFLEFPIPNGIAFIG
Sbjct: 422 EMIIPVLMKQAGLKLQENGIFLNVVSGVTLAETAGDLAVAAAICSSFLEFPIPNGIAFIG 481
Query: 518 EIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVIN 577
EIGLGGELR V R+EKRV+TVAKLGY+KC+VPK+AEKSL TL +E +GC+NLKEVI+
Sbjct: 482 EIGLGGELRTVPRIEKRVNTVAKLGYKKCVVPKAAEKSLPTLEDMNIEIVGCRNLKEVIS 541
Query: 578 VVF 580
VF
Sbjct: 542 SVF 544
>gi|384245101|gb|EIE18597.1| DNA repair protein rada [Coccomyxa subellipsoidea C-169]
Length = 594
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 233/516 (45%), Positives = 312/516 (60%), Gaps = 55/516 (10%)
Query: 115 NWVCSDCGYTDGQWWGMCRACESVGTMK-----RYSAGES-------------------- 149
+ C++CG QW G C +C T++ R +A S
Sbjct: 60 TYKCTECGEQSPQWKGRCPSCSGWNTLEKAEVLRETAKSSGGGGGGGAVAAAAAAAVRPL 119
Query: 150 -----DEGPVVQRT---WLPQKPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLG 201
+ P + R W+ + +P RL EV + WRIPL G G E+ARVLG
Sbjct: 120 GERIRNAAPTISRPRTGWVSSVSQ--RPQRLSEVGRNGYGSQWRIPLRGANGAELARVLG 177
Query: 202 GGLVPGSLVLIGGDPGVGKSTLLLQMAAII--------ADVHDLGEPSP------VVYVS 247
GG+VPGSL L+GGDPGVGKSTLLLQ+AA++ +D D E P V+YVS
Sbjct: 178 GGVVPGSLTLVGGDPGVGKSTLLLQVAAMLGPEPAIGGSDEEDADEEGPPPAGEAVLYVS 237
Query: 248 GEESVEQIGNRADRM-MIATEELFLYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVA 306
EESVEQ+G+RA+RM + + LFLYS+T + ++++++ + PRA+IIDSIQTVYL V
Sbjct: 238 AEESVEQVGSRAERMGLRGAKHLFLYSATRLVEVLQEIVAMQPRAVIIDSIQTVYLDDVT 297
Query: 307 GSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKF 366
GSAG + QV+EC +ALL AK+ +PV L GHVTK+GDIAGPRVLEHIVD V+YMEGE+
Sbjct: 298 GSAGSVSQVRECATALLHVAKRQGVPVFLVGHVTKAGDIAGPRVLEHIVDTVVYMEGERH 357
Query: 367 SSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMD 426
++RL+R +KNR+G TDE+GVF+M + GLQAV+NPS +FLS++ A AV V M+
Sbjct: 358 QAFRLVRGIKNRYGPTDEVGVFQMEESGLQAVANPSALFLSDRQMARN--ASSAVTVAME 415
Query: 427 GSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVLMKQAGLKLQENAIFLNVVSG 484
G+R L+E+QAL V R NGI +R +I++VL K L+L NVV G
Sbjct: 416 GTRPLLMEVQALTSPVHQGPPLRMPNGIHRNRLSLIMAVLTKHVRLRLHSVDCHTNVVGG 475
Query: 485 VALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYR 544
+ LTE A DLAVA A+ SS+ E PI IA IGEIGLGGELR + +E+RV AKLG+
Sbjct: 476 LTLTEPATDLAVALAVASSYFERPIAQNIAVIGEIGLGGELRPANHIERRVVEAAKLGFT 535
Query: 545 KCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
IVP + + AT + I C+ +K+ +
Sbjct: 536 TVIVPATRAPT-ATGRLAGVNIIPCRTIKDALEAAL 570
>gi|269836529|ref|YP_003318757.1| DNA repair protein RadA [Sphaerobacter thermophilus DSM 20745]
gi|269785792|gb|ACZ37935.1| DNA repair protein RadA [Sphaerobacter thermophilus DSM 20745]
Length = 462
Score = 384 bits (985), Expect = e-103, Method: Compositional matrix adjust.
Identities = 207/443 (46%), Positives = 289/443 (65%), Gaps = 29/443 (6%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRT--WLPQKPEEVQPV 170
RT +VC +CG ++G C C + G+M GP +R +P +P
Sbjct: 5 RTKFVCQNCGMETPAYYGRCPQCGTWGSMVETVEAR---GPARERRERGMPA----TRPA 57
Query: 171 RLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAI 230
RL EV ++ +P+ E RVLGGGLVPGSLVL+GGDPGVGKSTLLLQ+A +
Sbjct: 58 RLSEVTSAEERRKV-VPI-----GEFNRVLGGGLVPGSLVLLGGDPGVGKSTLLLQVAGL 111
Query: 231 IADVHDLGEPS--PVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLS 288
+A PS PVVYVS EES +QI RADR+ I ++L+L S T++E ++ V P+
Sbjct: 112 LA-------PSAGPVVYVSAEESTQQIKLRADRLGITADDLYLLSETNLEAALDAVDPVK 164
Query: 289 PRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGP 348
P LI+DSIQTVYL + +AG + QV+ECT+ L+++AK ++PV + GHVTK G IAGP
Sbjct: 165 PGLLIVDSIQTVYLDDLTSAAGSVSQVRECTARLMQYAKPRHLPVFIVGHVTKEGAIAGP 224
Query: 349 RVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSE 408
RVLEH+VDAVLY+EGE++ YR+LR+VKNRFGSTDE+GVF M+ G+Q V+NPS+ FL E
Sbjct: 225 RVLEHMVDAVLYLEGERYHQYRVLRAVKNRFGSTDEVGVFAMTGDGMQEVANPSEAFLQE 284
Query: 409 QHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMK 466
+ D+ G AV V ++G+R L+E+QAL + + R NG +R M+++VL K
Sbjct: 285 RSPDTH---GSAVGVTLEGTRPILVEVQALTSNSAFGLPRRTANGFDNNRLQMLVAVLSK 341
Query: 467 QAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELR 526
+ GL L I++N+V G+ + E A DLAV AI SS+ E P+ IGE+GL GELR
Sbjct: 342 RVGLGLGSQDIYVNIVGGLRIAEPAADLAVVTAIASSYRERPVDPNTVVIGEVGLSGELR 401
Query: 527 MVSRMEKRVSTVAKLGYRKCIVP 549
V+++E+R++ +KLG+ + +VP
Sbjct: 402 SVNQIERRLNEASKLGFARAVVP 424
>gi|345021356|ref|ZP_08784969.1| DNA repair protein RadA [Ornithinibacillus scapharcae TW25]
Length = 458
Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust.
Identities = 206/470 (43%), Positives = 295/470 (62%), Gaps = 25/470 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSA--GESDEGPVVQRTWLPQKPEEVQPV 170
+T +VC +CGY +W G C C + T+ +A G+ + KPE + +
Sbjct: 5 KTKFVCQECGYESAKWLGKCPGCNNWNTLVEETAITGKQSRHTFSGISQAGSKPERITSI 64
Query: 171 RLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAI 230
+ + +L NE+ RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ+++
Sbjct: 65 ESQDEPRIATKL-----------NELNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSSQ 113
Query: 231 IADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPR 290
+AD + PV+Y+SGEES Q RA+R+ + ++ L++ S T+++DI ++ L P
Sbjct: 114 LAD-----QELPVLYISGEESTRQTKLRAERLGVNSDLLYVLSETNLQDIANHIEDLKPA 168
Query: 291 ALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRV 350
++IDSIQT+Y V+ + G + QV+ECTS L+R AK +NIPV + GHVTK G IAGPR+
Sbjct: 169 LVVIDSIQTIYREEVSSAPGSVSQVRECTSELMRIAKTSNIPVFIVGHVTKEGAIAGPRL 228
Query: 351 LEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQH 410
LEH+VD VLY EGE+ +YR+LR VKNRFGST+E+G+FEM + GL+ V NPS+IFL E+
Sbjct: 229 LEHMVDTVLYFEGERHHTYRILRGVKNRFGSTNEMGIFEMKEEGLREVKNPSEIFLEER- 287
Query: 411 SDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMKQA 468
S+ AG V M+G+R L+EIQAL S R NG+ +R ++++VL K+
Sbjct: 288 --SKGAAGSTVVASMEGTRPVLVEIQALISPSSFGNPRRMANGLDNNRVPLLMAVLEKRV 345
Query: 469 GLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMV 528
G+ LQ +L V GV L E A DLAV +I SSF + P FIGE+GL GE+R V
Sbjct: 346 GMMLQNQDAYLKVAGGVKLDEPAIDLAVTISIASSFRDIPTRPDDIFIGEVGLTGEIRRV 405
Query: 529 SRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINV 578
SR+E+RV AKLG+++ I PK+ + +E IG ++++E +N+
Sbjct: 406 SRIEQRVQEAAKLGFKRVICPKNNLDGWTIP--KGIEVIGIQSVQEALNI 453
>gi|390559269|ref|ZP_10243620.1| DNA repair protein; 6-O-methylguanine-DNA methyltransferase
[Nitrolancetus hollandicus Lb]
gi|390174146|emb|CCF82913.1| DNA repair protein; 6-O-methylguanine-DNA methyltransferase
[Nitrolancetus hollandicus Lb]
Length = 457
Score = 379 bits (974), Expect = e-102, Method: Compositional matrix adjust.
Identities = 205/472 (43%), Positives = 299/472 (63%), Gaps = 22/472 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
RT +VC C ++G C C + G++ E +T +P +P RL
Sbjct: 5 RTKFVCQSCALESPAYYGRCPGCGAWGSLVETFEAEPKGRHRPAQTGVPARP-----ARL 59
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
EV +Q +P+ E+ RVLGGGLVPGSLVL+GGDPG+GKSTLLLQ A+++
Sbjct: 60 SEVPSA-EQSRHPVPI-----GELNRVLGGGLVPGSLVLVGGDPGIGKSTLLLQAASMLP 113
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
V PV+YVS EESV+Q+ RADR+ + ++LF+ + T +++++ + +P L
Sbjct: 114 PVV-----GPVLYVSAEESVQQVKLRADRLGLRIDDLFVLAETSLDNVLLATERANPGLL 168
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
+IDSIQTVYL G+ +AG + QV+ECT+ L++FAK +PVL+ GHVTK G IAGPRVLE
Sbjct: 169 VIDSIQTVYLDGLTSAAGSVSQVRECTARLMQFAKPRQLPVLIVGHVTKEGAIAGPRVLE 228
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VDAVLY+EG+++ YR+LR+VKNRFGSTDE+GVFEM+ G++ V NPS+ FL E+ +
Sbjct: 229 HMVDAVLYLEGDRYHQYRVLRAVKNRFGSTDEVGVFEMADAGMREVHNPSEAFLQERAGN 288
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMKQAGL 470
+ AG AVAV ++G+R L+E+QAL + S R NG A+R M+ +VL K+ GL
Sbjct: 289 A---AGSAVAVALEGTRPILVEVQALTSATSFGLPRRTANGFDANRLQMLTAVLTKRVGL 345
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
L I++N+V G+ + E A DL VA A+ SS+LE + IGEIGL GELR V++
Sbjct: 346 GLGGQDIYVNIVGGLRIAEPAVDLGVAVAVASSYLEQAVDPKTVVIGEIGLSGELRSVNQ 405
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVFTT 582
+++R++ AKLG+R+ ++P + + E ++ + + E I T
Sbjct: 406 LDRRLNEAAKLGFRRAVIPATLSRGRINRD-EDIQIVRAATVAEAIEAALVT 456
>gi|383762139|ref|YP_005441121.1| DNA repair protein RadA [Caldilinea aerophila DSM 14535 = NBRC
104270]
gi|381382407|dbj|BAL99223.1| DNA repair protein RadA [Caldilinea aerophila DSM 14535 = NBRC
104270]
Length = 451
Score = 377 bits (967), Expect = e-101, Method: Compositional matrix adjust.
Identities = 207/469 (44%), Positives = 297/469 (63%), Gaps = 25/469 (5%)
Query: 117 VCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEV--QPVRLLE 174
+CS CG +W G C C T++ + V+R+ P E +PV L +
Sbjct: 1 MCSACGAVHLRWAGKCSECGEWNTLEEVTVRP------VERSRSGMAPVETMSRPVALPD 54
Query: 175 VNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADV 234
V + + R+PL + E++RVLGGG+VPGS VL+GGDPG+GKSTLLLQMAA +A
Sbjct: 55 VARNDQP---RLPLQMV---ELSRVLGGGIVPGSCVLVGGDPGIGKSTLLLQMAADVAQ- 107
Query: 235 HDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALII 294
V+YVS EES QIG RA R+ I E L + S +E I+E ++ L P +I+
Sbjct: 108 ----RTGTVLYVSAEESAHQIGRRAARLGIRHERLMVLSEIVVESIIEHIENLKPVLVIV 163
Query: 295 DSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHI 354
DS+Q +Y A +AG + QV++C SALLR K NIP+ L GHVTK G IAGPRVLEH+
Sbjct: 164 DSVQAIYSGNGASAAGTVSQVRDCASALLRIGKTQNIPIFLVGHVTKEGSIAGPRVLEHM 223
Query: 355 VDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSE 414
VD VL +EGE+F ++RLLRS+KNRFGST+E+GVFEM++ G+Q V NPS++FL+E+ ++
Sbjct: 224 VDVVLQLEGERFHAFRLLRSIKNRFGSTNEVGVFEMNEQGMQEVRNPSELFLAERLPNA- 282
Query: 415 FLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVLMKQAGLKL 472
AG A+AV M+G+R L+E+QALC + S R NG+ +R ++++VL K+ G+ L
Sbjct: 283 --AGSAIAVSMEGTRPILVEVQALCSATAFSMPRRTANGVDVNRLLLLVAVLSKRVGMDL 340
Query: 473 QENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRME 532
+ IF+NVV G+ + E A DLA+A AI SSF P+ +A +GE+GL GELR V ++
Sbjct: 341 SDQDIFVNVVGGIRIDEPAADLAIAVAIASSFRNRPVHADLALMGEVGLSGELRSVGQLG 400
Query: 533 KRVSTVAKLGYRKCIVPKSA-EKSLATLGFEQMEFIGCKNLKEVINVVF 580
+R+ AKLG+ + + P+ A ++ +E IG + L + ++V
Sbjct: 401 RRLHEAAKLGFTRALAPRGALQRQSGERLPSGIEVIGVRTLHDALDVAL 449
>gi|317126828|ref|YP_004093110.1| DNA repair protein RadA [Bacillus cellulosilyticus DSM 2522]
gi|315471776|gb|ADU28379.1| DNA repair protein RadA [Bacillus cellulosilyticus DSM 2522]
Length = 467
Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust.
Identities = 215/474 (45%), Positives = 302/474 (63%), Gaps = 29/474 (6%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKR---YSAGESDEGPVVQRTWLPQKPEEVQP 169
+T +VC DCGY +W G C C+S +M +A G V T L KP QP
Sbjct: 5 KTKFVCQDCGYESMKWMGKCPGCQSWNSMVEEFEATASPKKRGFVTASTTL-SKP---QP 60
Query: 170 VRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAA 229
+ +E + ++ + I NE+ RVLGGG+VPGSLVL+GGDPG+GKSTLLLQ+++
Sbjct: 61 ITKIE-RREEQRYNTHI-------NELNRVLGGGIVPGSLVLVGGDPGIGKSTLLLQVSS 112
Query: 230 IIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSP 289
+V GE V+Y+SGEES++Q RADR+ I+++ELF+ + TD+E I + ++ ++P
Sbjct: 113 ---EVAKHGER--VLYISGEESIKQTKLRADRLHISSDELFVLAETDVEHIEKIIEEMNP 167
Query: 290 RALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPR 349
+IIDSIQTVYL V + G + QV+ECT+A +R AK I + + GHVTK G IAGPR
Sbjct: 168 TLVIIDSIQTVYLDAVTSAPGSVSQVRECTAAFMRIAKTKGIAIFIVGHVTKQGSIAGPR 227
Query: 350 VLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQ 409
+LEH+VD+VLY EGE+ +YR+LR+VKNRFGST+E+G+FEM ++GL V NPS+IFL E+
Sbjct: 228 LLEHMVDSVLYFEGERHHTYRILRAVKNRFGSTNEIGIFEMKEIGLAEVLNPSEIFLEER 287
Query: 410 HSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVLMKQ 467
+ + AG AV M+G+R+ L+EIQAL S R GI +R +I++VL K+
Sbjct: 288 SAGA---AGSAVVASMEGTRTVLVEIQALISPTSFGNPRRMSTGIDHNRISLIMAVLEKR 344
Query: 468 AGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRM 527
G+ LQ ++ V GV L E + DLA A AI SSF + P P IGE+GL GE+R
Sbjct: 345 VGMLLQNQDAYVKVAGGVRLDEPSIDLATAIAIASSFRDAPTPTSDVIIGEVGLTGEVRR 404
Query: 528 VSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQ-MEFIGCKNLKEVINVVF 580
V+R+E+RV +KLG+++ IVP EK+L ++ IG + E I V
Sbjct: 405 VTRLEQRVLEASKLGFKRVIVP---EKNLGGWNIPSGIDVIGVNTVNEAIEVTL 455
>gi|298242790|ref|ZP_06966597.1| DNA repair protein RadA [Ktedonobacter racemifer DSM 44963]
gi|297555844|gb|EFH89708.1| DNA repair protein RadA [Ktedonobacter racemifer DSM 44963]
Length = 523
Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust.
Identities = 199/457 (43%), Positives = 283/457 (61%), Gaps = 37/457 (8%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDE-------------GPVVQRTW 159
RT +VC CG +W G C C + T++ + + P+ Q T
Sbjct: 55 RTKYVCQQCGGEQNKWMGKCPDCGAWNTLEEVAETSPSQNATQQRRQALLTHAPLTQGTN 114
Query: 160 LPQKPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVG 219
+P E+QP+ ++ G ++D RVLG GLVPGS++LIGG+PG+G
Sbjct: 115 VPVVLPEIQPLSQPRISVGYPEMD--------------RVLGSGLVPGSVILIGGEPGIG 160
Query: 220 KSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIED 279
KSTLLLQ++ IA + PV+YVSGEESVEQ+ RA+R+ IA E L+L +S +++
Sbjct: 161 KSTLLLQVSGAIAQ-----QVGPVLYVSGEESVEQVKMRAERLEIAGERLYLLASIELDT 215
Query: 280 IVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHV 339
I E V L P LI+DSIQT+ + + G + QV+ECT L++ AK +++PV + GHV
Sbjct: 216 ITEAVHRLKPSLLIVDSIQTLIASHLTAAPGSISQVRECTLQLMQLAKSSHVPVFIIGHV 275
Query: 340 TKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVS 399
TK G +AGP+ LEHI DAVLY+EGE++ SYRLLR VKNRFG+T E+GVFEM G+ VS
Sbjct: 276 TKEGTVAGPKALEHIADAVLYLEGERYHSYRLLRGVKNRFGATHEVGVFEMQGEGMVEVS 335
Query: 400 NPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRA 457
NPS +FL+++ +D+ G A+ V M+G+R L+E+QAL + NGI +R
Sbjct: 336 NPSAVFLADRDADA---TGSAIVVSMEGTRPLLVEVQALVTPSNFGNARCTTNGIDHNRL 392
Query: 458 DMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIG 517
M+++VL K+ GL + + ++ NV+ G L E + DL VAAAI SS+ E +P+ + IG
Sbjct: 393 LMLLAVLTKRVGLAVGSHDVYANVIGGFNLEEPSIDLGVAAAIASSYREKNVPSDMVLIG 452
Query: 518 EIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEK 554
E+GL GELR VSR+ RV AKLG+++CIVP + K
Sbjct: 453 EVGLSGELRAVSRLAMRVREAAKLGFKRCIVPSAVGK 489
>gi|309790852|ref|ZP_07685396.1| DNA repair protein RadA [Oscillochloris trichoides DG-6]
gi|308227139|gb|EFO80823.1| DNA repair protein RadA [Oscillochloris trichoides DG6]
Length = 453
Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust.
Identities = 209/470 (44%), Positives = 299/470 (63%), Gaps = 25/470 (5%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVR 171
+RT +VC CG +W G C C + + S + + +P+ R
Sbjct: 4 SRTIFVCQQCGAQQSRWMGKCPDCGTWDSFVEQVETRSSNAKARESALVGARPQ-----R 58
Query: 172 LLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAII 231
L +V G Q R+P+ G E RVLGGGLVPGS+VLIGGDPGVGK+TLL Q+AA
Sbjct: 59 LRDVAVGGFQ---RLPI---LGAEFTRVLGGGLVPGSVVLIGGDPGVGKTTLLSQVAAQF 112
Query: 232 ADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRA 291
A D+G P +YVS EES +QI RA+R+ + E+L+++S ++ I+ +++ L P+
Sbjct: 113 A--ADVG---PALYVSAEESAQQIKLRAERLGMHAEDLYVFSENSLDTILVQIRELRPKL 167
Query: 292 LIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVL 351
+IIDSIQTVYL ++ +AG + QV+E L+ AK+ +IPV L GHVTK G IAGPRVL
Sbjct: 168 VIIDSIQTVYLEELSSAAGSVSQVREGALRLMHLAKELHIPVFLVGHVTKEGAIAGPRVL 227
Query: 352 EHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHS 411
EHIVD VLY+EG++F YRLLR VKNRFGST+E+GVFEM+ G++ V NPS +FL+E+ +
Sbjct: 228 EHIVDVVLYLEGDRFHQYRLLRGVKNRFGSTNEVGVFEMTGDGMREVLNPSAVFLAERSA 287
Query: 412 DSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVS--RHVNGIQASRADMIISVLMKQAG 469
S G AVAV+M+G+R LIE+QAL + + R NG +R M+++VL K+ G
Sbjct: 288 GS---PGSAVAVMMEGTRPLLIEVQALTSNTGSAQPRRTTNGFDPNRLLMLVAVLAKRVG 344
Query: 470 LKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVS 529
+ L I++N+V G+ ++E A DLAVA AI SSF PI + +GEIGL GELR VS
Sbjct: 345 MPLFNQDIYVNIVGGLRISEPAADLAVALAITSSFRNQPIAADMVLLGEIGLSGELRSVS 404
Query: 530 RMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVV 579
++E+R+S AKLG+ ++P ++ + T I ++L +V++++
Sbjct: 405 QIERRLSEAAKLGFHHAVLPAVSQVTPPT----GTTLIPARSLADVVDLI 450
>gi|56961904|ref|YP_173626.1| DNA repair protein RadA [Bacillus clausii KSM-K16]
gi|56908138|dbj|BAD62665.1| DNA repair protein RadA [Bacillus clausii KSM-K16]
Length = 482
Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust.
Identities = 208/474 (43%), Positives = 301/474 (63%), Gaps = 27/474 (5%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTM-KRYSAGESDEG-PVVQRTWLPQKPEEVQP 169
+T +VC +CGY +W G C C+S TM + + E + V + QKP+ +
Sbjct: 29 QKTKFVCQECGYESAKWMGKCPGCQSWNTMVEEINILEKQKNRSYVTSSGTRQKPQPITA 88
Query: 170 VRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAA 229
V +G K+ P E+ RVLGGG+VPGSLVL+GGDPG+GKSTLLLQ++A
Sbjct: 89 V------QGEKE-----PRVSTTMAELDRVLGGGIVPGSLVLVGGDPGIGKSTLLLQLSA 137
Query: 230 IIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSP 289
+A+V++ V+Y+SGEESV+Q RADR+ +A+++L++ + TDI I + + P
Sbjct: 138 KLANVNE-----RVLYISGEESVKQTKLRADRLELASDQLYVLAETDIALIEGAIDEVQP 192
Query: 290 RALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPR 349
+IIDSIQTVY + + G + QV+ECT+A +R AK + + + GHVTK G IAGP+
Sbjct: 193 SLVIIDSIQTVYQDEITSAPGSVAQVRECTAAFMRVAKTKGVAIFIVGHVTKQGSIAGPK 252
Query: 350 VLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQ 409
+LEH+VD+VLY EGE+ SYR+LR+VKNRFGST+E+G+FEM QLGL+ V NPS+IFL E+
Sbjct: 253 LLEHMVDSVLYFEGERHHSYRILRAVKNRFGSTNEMGIFEMKQLGLEEVKNPSEIFLEER 312
Query: 410 HSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVLMKQ 467
S+ AG V M+G+R L+E+QAL + R G+ +R ++++VL K+
Sbjct: 313 ---SQGAAGSVVVASMEGTRPVLVELQALISPMGFGNPRRMATGLDHNRVSLLMAVLEKR 369
Query: 468 AGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRM 527
AG+ LQ +L V GV L E A DLA+A +I SSF + P IGE+GL GE+R
Sbjct: 370 AGMLLQNQDAYLKVAGGVKLDEPAIDLAIALSIASSFRDQPTEPMDVAIGEVGLTGEIRR 429
Query: 528 VSRMEKRVSTVAKLGYRKCIVPKSAEKS-LATLGFEQMEFIGCKNLKEVINVVF 580
VSR+++RV+ AKLG+++ I+P+ + A G +E IG + L++ I VV
Sbjct: 430 VSRIDQRVNEAAKLGFKRVIIPEKNKGGWTAPAG---IEVIGVQTLEQAIEVVL 480
>gi|297582419|ref|YP_003698199.1| DNA repair protein RadA [Bacillus selenitireducens MLS10]
gi|297140876|gb|ADH97633.1| DNA repair protein RadA [Bacillus selenitireducens MLS10]
Length = 470
Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust.
Identities = 200/473 (42%), Positives = 294/473 (62%), Gaps = 30/473 (6%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTM-----KRYSAGESDEGPVVQRTWLPQKPEEV 167
+T ++C +CGY +W G C C T+ K S+ V + QKP+ +
Sbjct: 5 KTKFICQECGYESAKWMGKCPGCSGWNTLVEEMEKPASSAHEKRSFVTAGGGIRQKPQSI 64
Query: 168 QPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQM 227
+ E N+ + NE+ RVLGGG+VPGSLVL+GGDPG+GKSTLLLQ+
Sbjct: 65 MDIEQKEENR-----------VSTYINELNRVLGGGIVPGSLVLVGGDPGIGKSTLLLQV 113
Query: 228 AAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPL 287
+A +++ V+Y+SGEES++Q RA+R+ + + LF++S TD+E I + + +
Sbjct: 114 SATLSE-----HKKKVLYISGEESLKQTKLRANRLGVGNDYLFVHSETDVEYIEQAIDQV 168
Query: 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAG 347
+P +IIDSIQTVYL + + G + QV+E TS +R AK I + L GHVTK G IAG
Sbjct: 169 NPDLVIIDSIQTVYLDHITSAPGSVSQVRESTSVFMRIAKTRGIAIFLVGHVTKQGSIAG 228
Query: 348 PRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLS 407
PR+LEH+VD+VLY EGE+ +YR+LR+VKNRFGST+E+G+FEM + GL+ V NPS+IFL
Sbjct: 229 PRILEHMVDSVLYFEGERHHTYRILRAVKNRFGSTNEIGIFEMKETGLEEVLNPSEIFLE 288
Query: 408 EQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLM 465
E+ S + +G AV M+G+R L+E+Q+L S R G+ +R +I++VL
Sbjct: 289 ERSSGA---SGSAVVASMEGTRPVLVEMQSLIAPTSFGNPRRMATGVDHNRISLIMAVLE 345
Query: 466 KQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGEL 525
K+AG+ LQ + ++ V GV L E + DLA+A +I SSF + P G IGE+GL GE+
Sbjct: 346 KRAGILLQNHDAYVKVAGGVRLDEPSIDLAIAISIVSSFRDQPSRAGDVIIGEVGLTGEI 405
Query: 526 RMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGF-EQMEFIGCKNLKEVIN 577
R VSR+E+RV AKLG+ + I+P +++ + +E IG +++ E IN
Sbjct: 406 RRVSRIEQRVQEAAKLGFERVIIP---DRNFGGWTVPDGIEVIGARDINEAIN 455
>gi|23097549|ref|NP_691015.1| DNA repair protein RadA [Oceanobacillus iheyensis HTE831]
gi|22775772|dbj|BAC12050.1| DNA repair protein [Oceanobacillus iheyensis HTE831]
Length = 457
Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust.
Identities = 212/476 (44%), Positives = 298/476 (62%), Gaps = 37/476 (7%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQ------KPEE 166
+T +VC +CGY +W G C AC TM E D V RT KPE+
Sbjct: 5 KTKFVCQECGYESAKWMGKCPACHQWNTM----VEEIDPASVKGRTGYATSTTSAGKPEK 60
Query: 167 VQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQ 226
+ + +K ++ ++ E RVLGGG+V GSLVLIGGDPG+GKSTLLLQ
Sbjct: 61 ITAIE----SKKEPRITTKM-------REFNRVLGGGIVLGSLVLIGGDPGIGKSTLLLQ 109
Query: 227 MAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQP 286
++A +A+ D+ V+YVSGEES Q RADR+ I T++L++ S T++ DI ++V+
Sbjct: 110 ISAQLAE-KDMS----VLYVSGEESTRQTKLRADRLDITTDQLYVLSETNLYDISKQVEE 164
Query: 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIA 346
+ P ++IDSIQT++ V + G + QV+ECT L++ AK IP+ + GHVTK G IA
Sbjct: 165 VKPSFVVIDSIQTIFKEEVTSAPGSVSQVRECTMELMKIAKSNGIPIFIVGHVTKEGSIA 224
Query: 347 GPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFL 406
GPR+LEH+VDAVLY EGE+ +YR+LR VKNRFGST E+G+FEM + GL+ V NPS+IFL
Sbjct: 225 GPRLLEHMVDAVLYFEGERHHTYRILRGVKNRFGSTHEMGIFEMKEEGLREVMNPSEIFL 284
Query: 407 SEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVL 464
E+ SE AG V M+G+R+ L+EIQAL S R GI +R ++++VL
Sbjct: 285 EER---SEGAAGSTVVASMEGTRTVLVEIQALISPTSFGNPRRTATGIDHNRVPLLMAVL 341
Query: 465 MKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPI-PNGIAFIGEIGLGG 523
K+ GL LQ ++ V GV L E A DLA+A +I SSF + P PN I F+GE+GL G
Sbjct: 342 EKRVGLMLQNQDAYIKVAGGVKLDEPAIDLALAVSIASSFRDQPTNPNDI-FVGEVGLTG 400
Query: 524 ELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQ-MEFIGCKNLKEVINV 578
E+R VSR+E+RV AKLG+++ I PK+ +L + +E IG +++E +++
Sbjct: 401 EIRRVSRIEQRVQEAAKLGFKRVICPKN---NLDGWNYPSGIEVIGVSSVQEALDI 453
>gi|402299366|ref|ZP_10818977.1| DNA repair protein RadA [Bacillus alcalophilus ATCC 27647]
gi|401725404|gb|EJS98689.1| DNA repair protein RadA [Bacillus alcalophilus ATCC 27647]
Length = 458
Score = 369 bits (946), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 208/476 (43%), Positives = 300/476 (63%), Gaps = 30/476 (6%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKR---YSAGESDEGPVVQRTWLPQKPEEVQ 168
+T +VC +CGY +W G C C+ TM +A S V KP+ +
Sbjct: 4 KKTKFVCQECGYESAKWMGKCPGCQGWNTMVEEFDQTAKSSSRSYVTSANQGAAKPQSIT 63
Query: 169 PVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMA 228
V + + RI + + E+ RVLGGG+VPGSLVL+GGDPG+GKSTLLLQ++
Sbjct: 64 KVE--------SEKEPRINTTMV---ELNRVLGGGVVPGSLVLVGGDPGIGKSTLLLQLS 112
Query: 229 AIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLS 288
+ +A+ + V+Y+SGEESV+Q RADR+ ++T EL++ + TDI I + + +
Sbjct: 113 SKLAE-----QKQRVLYISGEESVKQTKLRADRLNLSTAELYVLAETDISFIEKAIDEVD 167
Query: 289 PRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGP 348
P ++IDSIQTVY +A + G + QV+ECT+A ++ AK I + + GHVTK G IAGP
Sbjct: 168 PVLVVIDSIQTVYQEEIASAPGSVAQVRECTAAFMKIAKTRGISIFIVGHVTKQGSIAGP 227
Query: 349 RVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSE 408
++LEH+VD+VLY EGE+ +YR+LR+VKNRFGST+E+G+FEM +LGL+ V NPS+IFL E
Sbjct: 228 KLLEHMVDSVLYFEGERHHTYRILRAVKNRFGSTNEMGIFEMKELGLEEVLNPSEIFLEE 287
Query: 409 QHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVLMK 466
+ S+ +AG V M+G+R L+E+QAL S R GI +R ++++VL K
Sbjct: 288 R---SQGVAGSIVVASMEGTRPVLVELQALISPTSFGNPRRMATGIDHNRVSLLMAVLEK 344
Query: 467 QAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFL-EFPIPNGIAFIGEIGLGGEL 525
+ GL LQ +LNV GV L E A DLAVA +I SSF + P +A IGEIGL GE+
Sbjct: 345 RVGLLLQNQDAYLNVAGGVRLDEPAIDLAVAISIASSFRNQVTNPMDVA-IGEIGLTGEI 403
Query: 526 RMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGF-EQMEFIGCKNLKEVINVVF 580
R VSR+E+RV+ AKLG+++ I+P EK++ + ++ IG L+E ++ V
Sbjct: 404 RRVSRIEQRVNEAAKLGFKRAIIP---EKNIGGWSVPKDIKVIGVSTLEEALDAVL 456
>gi|386712439|ref|YP_006178761.1| DNA repair protein RadA [Halobacillus halophilus DSM 2266]
gi|384071994|emb|CCG43484.1| DNA repair protein RadA [Halobacillus halophilus DSM 2266]
Length = 459
Score = 367 bits (942), Expect = 9e-99, Method: Compositional matrix adjust.
Identities = 204/476 (42%), Positives = 299/476 (62%), Gaps = 32/476 (6%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTM-KRYSAGESDEGPVVQ--RTWLPQKPEEVQP 169
+T +VC +CGY +W G C C+ T+ + SA ++ V Q T KPE++
Sbjct: 5 KTKFVCQECGYETAKWMGKCPGCQQWNTLVEEVSAPSTNSRHVFQTSSTSSKTKPEKINS 64
Query: 170 VRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAA 229
++ + + R+P E RVLGGG+V GSLVLIGGDPG+GKSTLLLQ++A
Sbjct: 65 IK--------SEKEPRLPTDM---PEFNRVLGGGIVAGSLVLIGGDPGIGKSTLLLQVSA 113
Query: 230 IIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSP 289
IA+ + PV+Y+SGEES Q RA+R+ I ++EL++ S T+++D++ +++ + P
Sbjct: 114 QIAN-----KDKPVLYISGEESSRQTKLRAERLNITSDELYVLSETNLQDVINQIEAIEP 168
Query: 290 RALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPR 349
++IDSIQT++ V + G + QV+ECTS L+R AK IP+ + GHVTK G IAGPR
Sbjct: 169 EFVVIDSIQTIFKEDVTSAPGSVSQVRECTSQLMRIAKNKGIPIFIVGHVTKEGSIAGPR 228
Query: 350 VLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQ 409
+LEH+VDAVLY EGE+ ++R+LRSVKNRFGST E+G+FEM + GL V NPS+IFL E+
Sbjct: 229 LLEHMVDAVLYFEGERHHTFRILRSVKNRFGSTHEMGIFEMKEQGLVEVLNPSEIFLEER 288
Query: 410 HSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVLMKQ 467
S+ AG V M+G+R L+EIQ+L + R G+ +R ++++VL K+
Sbjct: 289 ---SQGAAGSVVVASMEGTRPVLVEIQSLISPTAYGNPRRMATGLDNNRVPLLMAVLEKR 345
Query: 468 AGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRM 527
AGL LQ ++ V GV L E A DLAVA +I SSF + +GE+GL GE+R
Sbjct: 346 AGLLLQNQDAYVKVAGGVKLDEPAIDLAVALSIASSFRDQVSKAEDVVVGEVGLTGEVRR 405
Query: 528 VSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFE---QMEFIGCKNLKEVINVVF 580
V+R+E+RV AKLG+++ I+PK K+L G++ +E +G ++E + V
Sbjct: 406 VARIEQRVQEAAKLGFKRVIIPK---KNLD--GWKPSSSIEVVGVSTVQEAMKVTL 456
>gi|219850116|ref|YP_002464549.1| DNA repair protein RadA [Chloroflexus aggregans DSM 9485]
gi|219544375|gb|ACL26113.1| DNA repair protein RadA [Chloroflexus aggregans DSM 9485]
Length = 465
Score = 367 bits (942), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 201/440 (45%), Positives = 282/440 (64%), Gaps = 20/440 (4%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVR 171
RT +VC CG +W G C C + ++ + + T L Q QP R
Sbjct: 4 TRTIFVCQQCGAQQSRWMGRCPECGAWDSLVEQLIAPARATGTGRPTALGQN----QPTR 59
Query: 172 LLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAII 231
L ++ Q R+P+ + E ARVLGGGLVPGS+VLIGGDPGVGKSTLL Q+AA
Sbjct: 60 LRDIPLADFQ---RLPV---YAEEFARVLGGGLVPGSVVLIGGDPGVGKSTLLGQVAA-- 111
Query: 232 ADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRA 291
H P +YVS EES +QI RA+R+ + ++LF+ + T ++ I+E ++ L PR
Sbjct: 112 ---HFAASVGPALYVSAEESAQQIRMRAERLGLTADDLFILAETSLDLIIEHIRTLRPRL 168
Query: 292 LIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVL 351
+I+DSIQTVYL + +AG + QV+E L++ AK+T IP++L GHVTK G IAGPRVL
Sbjct: 169 VIVDSIQTVYLPELTSAAGSVSQVREGALRLMQLAKETAIPIVLVGHVTKEGAIAGPRVL 228
Query: 352 EHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHS 411
EHIVD VLY+EG++F +RLLR VKNRFGST+E+GVFEM+ GL+ V NPS++FL+E+++
Sbjct: 229 EHIVDVVLYLEGDRFHQFRLLRGVKNRFGSTNEVGVFEMAGDGLREVRNPSQVFLAERNT 288
Query: 412 DSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVLMKQAG 469
S G VAV ++G+R L+E+QAL + + R NG +R M+ +VLMK+ G
Sbjct: 289 HS---PGSTVAVTLEGTRPLLVEVQALTSHTANAQPRRTTNGFDLNRLLMLTAVLMKRVG 345
Query: 470 LKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVS 529
L L +++N+V G+ + E A DLAV AI SS+ I + +GE+GL GELR VS
Sbjct: 346 LPLFNQDLYVNIVGGLRIGEPAADLAVTLAIASSYRNQRIDPDVVCLGEVGLSGELRSVS 405
Query: 530 RMEKRVSTVAKLGYRKCIVP 549
++++R+S AKLG+R +VP
Sbjct: 406 QIDRRLSEAAKLGFRHAVVP 425
>gi|433461664|ref|ZP_20419270.1| DNA repair protein RadA [Halobacillus sp. BAB-2008]
gi|432189836|gb|ELK46901.1| DNA repair protein RadA [Halobacillus sp. BAB-2008]
Length = 459
Score = 367 bits (941), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 206/474 (43%), Positives = 291/474 (61%), Gaps = 28/474 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYS---AGESDEGPVVQRTWLPQKPEEVQP 169
+T +VC +CGY +W G C C T+ + AG S T KPE +
Sbjct: 5 KTKFVCQECGYETPKWMGKCPGCNQWNTLVEETSAPAGNSRHVFQTSSTSAMTKPERITQ 64
Query: 170 VRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAA 229
++ Q + R+P S E RVLGGG+V GSLVLIGGDPG+GKSTLLLQ++A
Sbjct: 65 IK--------SQKEPRLPTSM---PEFNRVLGGGIVAGSLVLIGGDPGIGKSTLLLQVSA 113
Query: 230 IIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSP 289
IA D PV+Y+SGEES Q RA+R+ + ++EL++ T+++D++ ++ + P
Sbjct: 114 QIAK-KDF----PVLYISGEESSRQTKLRAERLGVMSDELYVLPETNLQDVLNQIDQIEP 168
Query: 290 RALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPR 349
+ ++IDSIQT++ + + G + QV+ECTS L+R AK IP+ + GHVTK G IAGPR
Sbjct: 169 KFVVIDSIQTIFKEDITSAPGSVAQVRECTSHLMRIAKTKGIPIFIVGHVTKEGSIAGPR 228
Query: 350 VLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQ 409
+LEH+VDAVLY EGE+ ++R+LRSVKNRFGST E+G+FEM + GL+ V NPS+IFL E+
Sbjct: 229 LLEHMVDAVLYFEGERHHTFRILRSVKNRFGSTHEMGIFEMKEKGLEEVLNPSEIFLEER 288
Query: 410 HSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVLMKQ 467
S+ AG V M+G+R L+EIQAL + R G+ +R ++++VL K+
Sbjct: 289 ---SQGAAGSIVVASMEGTRPVLVEIQALISPTAYGNPRRMATGLDTNRVPLLMAVLEKR 345
Query: 468 AGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNG-IAFIGEIGLGGELR 526
AGL LQ ++ V GV L E A DLAVA +I SSF + NG +GE+GL GE+R
Sbjct: 346 AGLLLQNQDAYVKVAGGVKLDEPAIDLAVALSIASSFRN-KVSNGDDVVVGEVGLTGEIR 404
Query: 527 MVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
VSR+E+RV AKLG+++ I+PK Q+E IG ++E + V
Sbjct: 405 RVSRIEQRVQEAAKLGFKRAIIPKKNMDGWTPPS--QIEVIGVSTVQEAMKVTL 456
>gi|212637927|ref|YP_002314447.1| DNA repair protein RadA [Anoxybacillus flavithermus WK1]
gi|212559407|gb|ACJ32462.1| ATP-dependent serine protease, RadA [Anoxybacillus flavithermus
WK1]
Length = 464
Score = 367 bits (941), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 201/447 (44%), Positives = 279/447 (62%), Gaps = 31/447 (6%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQ---RTWLPQKPEEV-Q 168
+T +VC CGY +W G C C S M +E +V+ R E V +
Sbjct: 5 KTKFVCQHCGYETAKWMGKCPGCHSWNAM-------VEETEIVKPHTRALFVHTEEIVAK 57
Query: 169 PVRLLEVNKGMK-QLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQM 227
PV + V + ++D + E RVLGGG+V GSLVLIGGDPG+GKSTLLLQ+
Sbjct: 58 PVSITTVETTQEPRIDTKF-------TEFNRVLGGGIVRGSLVLIGGDPGIGKSTLLLQI 110
Query: 228 AAIIA-DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQP 286
A +A D H V+Y+SGEESV+Q RA+R+ + E L++ S T++E I++ V
Sbjct: 111 CAQLASDAHS------VLYISGEESVKQTKLRAERLHVTAEHLYVLSETNLEHIIQTVDE 164
Query: 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIA 346
+ P ++IDSIQT+Y + + G + QV+ECT+ L+R AK I + + GHVTK G +A
Sbjct: 165 MKPAFVVIDSIQTIYRSEITSAPGSVSQVRECTAELMRLAKTKGIAIFIVGHVTKEGALA 224
Query: 347 GPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFL 406
GPR+LEH+VD VLY EGE+ +YR+LR+VKNRFGST+E+G+FEM ++GL V NPS+IFL
Sbjct: 225 GPRILEHMVDTVLYFEGERHHTYRILRAVKNRFGSTNEIGIFEMKEMGLTEVKNPSEIFL 284
Query: 407 SEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVL 464
E+ S+ AG V M+G+R L+EIQAL S T R GI +R ++++VL
Sbjct: 285 EER---SKGAAGSTVVASMEGTRPVLVEIQALVSPTSFGTPRRMATGIDHNRVSLLMAVL 341
Query: 465 MKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGE 524
K+ GL LQ +L V G+ L E A DLA+A +I SSF + P + IGE+GL GE
Sbjct: 342 EKRVGLLLQNQDAYLKVAGGIKLDEPAIDLAIAVSIASSFRDQPTNHTDVVIGEVGLTGE 401
Query: 525 LRMVSRMEKRVSTVAKLGYRKCIVPKS 551
+R VSR+E+RV AKLG+++ I+PKS
Sbjct: 402 VRRVSRIEQRVQEAAKLGFQRIIIPKS 428
>gi|222523773|ref|YP_002568243.1| DNA repair protein RadA [Chloroflexus sp. Y-400-fl]
gi|222447652|gb|ACM51918.1| DNA repair protein RadA [Chloroflexus sp. Y-400-fl]
Length = 467
Score = 366 bits (940), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 208/447 (46%), Positives = 283/447 (63%), Gaps = 34/447 (7%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRAC-------ESVGTMKRYSAGESDEGPVVQRTWLPQKP 164
RT +VC CG +W G C C E + T R + G+ V Q
Sbjct: 4 TRTVFVCQQCGAQQSRWMGKCPECGAWDSLVEQIVTPARGTGGQR-AATVGQN------- 55
Query: 165 EEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLL 224
QP+RL +V Q R+P+ + E ARVLGGGLVPGS+VLIGGDPGVGKSTLL
Sbjct: 56 ---QPIRLRDVPLTDFQ---RLPV---YAEEFARVLGGGLVPGSVVLIGGDPGVGKSTLL 106
Query: 225 LQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKV 284
Q+AA H P +YVS EES +QI RA+R+ + ++LFL + T ++ I+E +
Sbjct: 107 GQVAA-----HFAASVGPALYVSAEESAQQIRLRAERLGLTADDLFLLAETSLDLIIEHI 161
Query: 285 QPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGD 344
+ L PR +I+DSIQTVYL + +AG + QV+E L++ AK+T IP++L GHVTK G
Sbjct: 162 RHLRPRLVIVDSIQTVYLPELTSAAGSVSQVREGALRLMQLAKETAIPIVLVGHVTKEGA 221
Query: 345 IAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKI 404
IAGPRVLEHIVD VLY+EG++F +RLLR VKNRFGST+E+GVFEM+ GL+ V NPS++
Sbjct: 222 IAGPRVLEHIVDVVLYLEGDRFHQFRLLRGVKNRFGSTNEVGVFEMTGDGLREVRNPSQV 281
Query: 405 FLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIIS 462
FL+E+++ S G V V ++G+R L+E+QAL + R NG +R M+ +
Sbjct: 282 FLAERNTQS---PGSTVTVTLEGTRPLLVEVQALTSHTGNAQPRRTTNGFDLNRLLMLTA 338
Query: 463 VLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLG 522
VL K+ GL L +++N+V G+ + E A DLAVA AI SS+ I + +GEIGL
Sbjct: 339 VLSKRVGLPLFNQDLYVNIVGGLRIGEPAADLAVALAIASSYRNQRIDPDLVCLGEIGLS 398
Query: 523 GELRMVSRMEKRVSTVAKLGYRKCIVP 549
GELR VS++E+R+S AKLG+R+ IVP
Sbjct: 399 GELRSVSQLERRLSEAAKLGFRRAIVP 425
>gi|333373137|ref|ZP_08465053.1| DNA repair protein RadA [Desmospora sp. 8437]
gi|332970716|gb|EGK09696.1| DNA repair protein RadA [Desmospora sp. 8437]
Length = 460
Score = 366 bits (940), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 209/448 (46%), Positives = 288/448 (64%), Gaps = 28/448 (6%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTM--KRYSAGE-SDEGPVVQRTWLPQKPEEVQ 168
N+T + C +CGY +W G C C + TM +R G S G QR P P
Sbjct: 10 NKTKFACQECGYESPKWMGRCPGCGNWNTMVEERTIQGRGSQRGAGTQRR--PALP---- 63
Query: 169 PVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMA 228
+ EV+ G K P S E+ RVLGGGLVPGS++L+GGDPG+GKSTLLLQ +
Sbjct: 64 ---ITEVS-GQKH-----PRSDTGVRELNRVLGGGLVPGSMILVGGDPGIGKSTLLLQAS 114
Query: 229 AIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLS 288
+A+ LG P++YVSGEES EQI RADR+ +LF+ + TD++ + V+ +S
Sbjct: 115 HRLAE---LG--MPILYVSGEESAEQIRLRADRLESVHPQLFVAAETDLDAVEALVEEVS 169
Query: 289 PRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGP 348
PR L++DSIQTVYL V + G + QV+ECT L+R AK I V++ GHVTK G IAGP
Sbjct: 170 PRVLVVDSIQTVYLPDVTSAPGSVAQVRECTGRLMRLAKGQGIAVIIVGHVTKEGAIAGP 229
Query: 349 RVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSE 408
R+LEH+VD VLY EGE+ +YR+LR+VKNRFGST+E+G+FEM GL V NPS++FLSE
Sbjct: 230 RMLEHMVDCVLYFEGERHHTYRVLRAVKNRFGSTNEIGLFEMRTQGLAEVDNPSEMFLSE 289
Query: 409 QHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVLMK 466
+ + ++G AV M+G+R LIE+QAL S +T R +G+ +R MI++VL K
Sbjct: 290 RPAG---VSGSAVTASMEGTRPVLIELQALVAPTSFATPKRMASGLDHNRVTMIMAVLEK 346
Query: 467 QAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELR 526
+ GL LQ ++NVV GV L E A DLAVA ++ SSF + P IGE+GL GE+R
Sbjct: 347 RLGLFLQNQDAYVNVVGGVRLDEPAVDLAVAVSLASSFRDRPTRPKDVLIGEVGLTGEVR 406
Query: 527 MVSRMEKRVSTVAKLGYRKCIVPKSAEK 554
V+R+E+RV+ A +G+++ I+P+ ++
Sbjct: 407 GVTRLEQRVAEAANMGFQRAILPRKNQR 434
>gi|402838774|ref|ZP_10887277.1| DNA repair protein RadA [Eubacteriaceae bacterium OBRC8]
gi|402272334|gb|EJU21555.1| DNA repair protein RadA [Eubacteriaceae bacterium OBRC8]
Length = 467
Score = 365 bits (938), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 197/467 (42%), Positives = 294/467 (62%), Gaps = 19/467 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T + C +CGY +WWG+C +C + GT+K + + + ++ L E+V P++L
Sbjct: 5 KTKYTCENCGYETSKWWGVCPSCSTAGTLKEEVYTQKSK-TIEKQVELITLGEDVSPIKL 63
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
EV KG + + + + E RVLGGG+V GSLVLIGGDPG+GKST+LLQ+ I+
Sbjct: 64 SEV-KGQEYVRFSTGIK-----EFDRVLGGGIVSGSLVLIGGDPGIGKSTILLQLTNNIS 117
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
D + V+YVS EES+EQI RADR+ +L + + T++E I +++ + P +
Sbjct: 118 DRKN------VLYVSAEESLEQIKLRADRIFEKEADLLIMAQTNLEIIEKQILEIKPDVI 171
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQT+ + G + QVK+ + L++ KK NI + GHVTK G IAGPRVLE
Sbjct: 172 IIDSIQTISSTTLDSLPGSVSQVKDIANRLMKICKKENICCFIVGHVTKDGAIAGPRVLE 231
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EGEK++SYR++R+VKNRFGST+ELGVFEM+ GL V NPS+I LSE S+
Sbjct: 232 HLVDTVLYFEGEKYNSYRMIRAVKNRFGSTNELGVFEMTDRGLVEVDNPSRILLSENDSN 291
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVS--RHVNGIQASRADMIISVLMKQAGL 470
AG A+ ++G+R L+EIQ+L +S + S R GI +R +M+++VL K AG+
Sbjct: 292 E---AGTAIVSCVEGTRPMLVEIQSLVISTNFPSPRRTGTGIDYNRLNMLLAVLEKHAGI 348
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
+Q +++N+ G+ L E DL V AI SS+ P+ +A GE+GL GE+R VS
Sbjct: 349 LIQNYDVYVNLTGGIKLNEPFIDLGVIIAIASSYYNVPVKKLLAICGEVGLTGEIRNVSF 408
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVIN 577
++ R++ KLG+ + +VP S K + G +++ G KN+K+ ++
Sbjct: 409 VQNRINEAEKLGFEEILVPYSNLKDIKLKG-NKIKVTGVKNIKQALD 454
>gi|406661733|ref|ZP_11069846.1| DNA repair protein RadA [Cecembia lonarensis LW9]
gi|405554371|gb|EKB49467.1| DNA repair protein RadA [Cecembia lonarensis LW9]
Length = 459
Score = 365 bits (937), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 195/475 (41%), Positives = 300/475 (63%), Gaps = 29/475 (6%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGT-----MKRYSAGESDEGPVVQRTWLPQKPEEV 167
+T++ C +CG +W G C +C + T +++ AG + +P+++
Sbjct: 5 KTSFFCQECGAQSPKWIGKCPSCGAWNTYVEEVIQKEEAGRGNWKQANTGIKKASQPKKL 64
Query: 168 QPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQM 227
Q + E + + Q E+ RVLGGG+VPG+LVLIGG+PG+GKSTL+LQ+
Sbjct: 65 QEINFEEQPRIITQ-----------DQELDRVLGGGIVPGALVLIGGEPGIGKSTLMLQI 113
Query: 228 AAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPL 287
A +++ + V+YVSGEES QI RA+RM +E ++ S T+ + I E+V L
Sbjct: 114 ALMLSKLK-------VLYVSGEESESQIKMRAERMHFVSENCYVLSETNTQHIFEEVNKL 166
Query: 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAG 347
P L+IDSIQT++ + V +AG + QV+ECT L+RFAK+T PV L GH+TK G IAG
Sbjct: 167 QPDILVIDSIQTLHSKYVESAAGSVSQVRECTGELMRFAKETGTPVFLIGHITKDGAIAG 226
Query: 348 PRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLS 407
P+VLEH+VD VL EG++ SYR+LR+ KNRFGST+ELG++EM GL+ V+NPS+I L+
Sbjct: 227 PKVLEHMVDTVLQFEGDRHLSYRILRTSKNRFGSTNELGIYEMRADGLRQVANPSEILLT 286
Query: 408 EQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLM 465
++ E L G+A+ +++G+R LIEIQ+L + T R G A R +M+++VL
Sbjct: 287 QRE---ELLNGVAIGAMLEGNRPLLIEIQSLVSPATYGTPQRSSTGFDAKRLNMLLAVLE 343
Query: 466 KQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGEL 525
K+ G++L + +FLNV G+ + + A DLAV A++ SS+ + P+P + F GEIGLGGE+
Sbjct: 344 KRGGMRLGQQDVFLNVAGGMRVDDPALDLAVCASLISSYEDSPVPEDLCFAGEIGLGGEI 403
Query: 526 RMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
R V R+E R++ KLG+++ +V K A K L T + +++ + L+++ V+F
Sbjct: 404 RAVHRIENRIAEAEKLGFKRIMVSKYAVKGLDTKKY-KIKVLPLSKLEDMYQVIF 457
>gi|288554697|ref|YP_003426632.1| DNA repair protein RadA [Bacillus pseudofirmus OF4]
gi|288545857|gb|ADC49740.1| DNA repair protein RadA [Bacillus pseudofirmus OF4]
Length = 458
Score = 365 bits (937), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 204/476 (42%), Positives = 298/476 (62%), Gaps = 30/476 (6%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRY---SAGESDEGPVVQRTWLPQKPEEVQ 168
+T +VC +CGY +W G C C+ TM SA +S V KP+ +
Sbjct: 4 KKTKFVCQECGYESAKWMGKCPGCQGWNTMVEEFEPSAKQSSRSYVTSGAAQGTKPQAIT 63
Query: 169 PVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMA 228
+ + + + R+ + + E+ RVLGGG+VPGSLVL+GGDPG+GKSTLLLQ++
Sbjct: 64 TI--------VSETEARMSTTMV---ELNRVLGGGIVPGSLVLVGGDPGIGKSTLLLQLS 112
Query: 229 AIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLS 288
A +A ++ V+Y+SGEESV+Q RADR+ +++ L++ + TD+ I + +
Sbjct: 113 AKLAATNE-----KVLYISGEESVKQTKLRADRLNVSSSNLYVLAETDLSFIERAIDQVE 167
Query: 289 PRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGP 348
P +IIDSIQTVY +A + G + QV+ECT+A ++ AK I + + GHVTK G IAGP
Sbjct: 168 PALVIIDSIQTVYQDEIASAPGSVAQVRECTAAFMKIAKTRGIAIFIVGHVTKQGSIAGP 227
Query: 349 RVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSE 408
++LEH+VD+VLY EGE+ +YR+LR+VKNRFGST+E+G+FEM +LGL+ V NPS+IFL E
Sbjct: 228 KLLEHMVDSVLYFEGERHHTYRILRAVKNRFGSTNEMGIFEMKELGLEEVLNPSEIFLEE 287
Query: 409 QHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVLMK 466
+ S+ AG V M+G+R L+E+QAL S R GI +R ++++VL K
Sbjct: 288 R---SKGAAGSIVVASMEGTRPVLVELQALISPTSFGNPRRMATGIDHNRVSLLMAVLEK 344
Query: 467 QAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFL-EFPIPNGIAFIGEIGLGGEL 525
+ GL LQ +LNV GV L E A DLA+A +I SSF + P +A IGEIGL GE+
Sbjct: 345 RVGLLLQNQDAYLNVAGGVRLDEPAIDLAIALSIASSFRNQVTSPTDVA-IGEIGLTGEI 403
Query: 526 RMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGF-EQMEFIGCKNLKEVINVVF 580
R VSR+E+RV+ AKLG+++ I+P EK+L ++++ +G L+ + V
Sbjct: 404 RRVSRIEQRVNEAAKLGFKRAIIP---EKNLGGWSVPKEIQVVGVPTLERALEVAL 456
>gi|403071333|ref|ZP_10912665.1| DNA repair protein RadA [Oceanobacillus sp. Ndiop]
Length = 457
Score = 365 bits (937), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 207/471 (43%), Positives = 291/471 (61%), Gaps = 27/471 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTM--KRYSAGESDEGPVVQRTWLPQKPEEVQPV 170
+T +VC +CGY +W G C +C S TM + ++ G T KPE + +
Sbjct: 5 KTKYVCQECGYESAKWMGKCPSCNSWNTMVEEIEASAVRGRGSFSSGTQTVSKPESITSI 64
Query: 171 RLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAI 230
Q + RI S E RVLGGG+V GSLVLIGGDPG+GKSTLLLQ+++
Sbjct: 65 E--------SQKEPRITTSM---KEFNRVLGGGIVLGSLVLIGGDPGIGKSTLLLQISSQ 113
Query: 231 IADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPR 290
+A G+ PV+YVSGEES Q RADR+ I + L++ S T++ DI ++++ + P
Sbjct: 114 LA-----GKEVPVLYVSGEESTRQTKLRADRLGIKEDLLYVLSETNLFDIGKQIEEVRPS 168
Query: 291 ALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRV 350
++IDSIQT++ V + G + QV+ECT L++ AK IP+ + GHVTK G IAGPR+
Sbjct: 169 FVVIDSIQTIFKEEVTSAPGSVSQVRECTVELMKIAKSNGIPIFIVGHVTKEGAIAGPRL 228
Query: 351 LEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQH 410
LEH+VDAVLY EGE+ +YR+LR VKNRFGST+E+G+FEM + GL+ V NPS+IFL E+
Sbjct: 229 LEHMVDAVLYFEGERHHTYRILRGVKNRFGSTNEMGIFEMKEEGLREVLNPSEIFLEER- 287
Query: 411 SDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVLMKQA 468
SE AG V M+G+R L+EIQAL S R GI +R ++++VL K+
Sbjct: 288 --SEGTAGSTVVASMEGTRPVLVEIQALISPTSFGNPRRTATGIDHNRVPLLMAVLEKRV 345
Query: 469 GLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMV 528
GL LQ ++ V GV L E A DLA+A +I SSF + P F+GE+GL GE+R V
Sbjct: 346 GLMLQNQDAYIKVAGGVKLDEPAIDLALAVSIASSFRDQPTNPDDIFVGEVGLTGEIRRV 405
Query: 529 SRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQ-MEFIGCKNLKEVINV 578
SR+E+RV AKLG+++ I PK+ +L + + ++ IG ++E + V
Sbjct: 406 SRIEQRVQEAAKLGFKRVICPKN---NLDGWSYPKGIQVIGVSTVQEALEV 453
>gi|147856590|emb|CAN82494.1| hypothetical protein VITISV_033043 [Vitis vinifera]
Length = 415
Score = 365 bits (937), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 205/372 (55%), Positives = 243/372 (65%), Gaps = 47/372 (12%)
Query: 11 RFFHSPKQFLP--LFNRTHFLSRQFPQFSRQFHSTTLRLCSAGES--------------- 53
+ +PK+ +P L F S Q P+FSR F T R S
Sbjct: 11 KHLFNPKKHIPISLSPLISFQSLQNPKFSRHFRCTNHRRSEESTSLDADSPSIGIGSSSP 70
Query: 54 -----QTVPPVWSIY---GSSIAN--------GVPESSGNVNSQSSSDFEKPQVKKKTNL 97
+ W+++ GS ++ G S +VN S EK + + L
Sbjct: 71 DTETNSSRRRTWTVFNTEGSQYSDRQESGSRSGAERSEVSVNKGFGS-VEKARFGGRYGL 129
Query: 98 GLGD--LVGTRKKGKANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEG--- 152
D +V RKKGK+ + WVCSDCGY+DGQWWG CR C VGTMK++SAGES G
Sbjct: 130 ASSDGGVVRGRKKGKS-KVCWVCSDCGYSDGQWWGACRECNKVGTMKQFSAGESGNGGSR 188
Query: 153 -------PVVQRTWLPQKPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLV 205
V R+WLPQ+P EVQP+RL +VN+G+ Q++WRIPL G FG EVARVLGGGLV
Sbjct: 189 VSGFEVSDNVVRSWLPQQPTEVQPLRLTDVNRGINQMNWRIPLHGPFGYEVARVLGGGLV 248
Query: 206 PGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIA 265
PGSLVL+GGDPG GKSTLLLQ+AAIIA+ HD+G SPVVYVSGEESVEQIGNRADRM I
Sbjct: 249 PGSLVLVGGDPGAGKSTLLLQIAAIIAEGHDIGGSSPVVYVSGEESVEQIGNRADRMRID 308
Query: 266 TEELFLYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRF 325
TEELFLYSSTDIEDI+ +V LSPRAL++DSIQTVYL+GV GSAGGL QVKECTSALLR
Sbjct: 309 TEELFLYSSTDIEDILGQVHLLSPRALVVDSIQTVYLKGVIGSAGGLSQVKECTSALLRX 368
Query: 326 AKKTNIPVLLAG 337
AKKTNIPV + G
Sbjct: 369 AKKTNIPVWVIG 380
>gi|452854150|ref|YP_007495833.1| DNA repair protein; 6-O-methylguanine-DNA methyltransferase
[Bacillus amyloliquefaciens subsp. plantarum UCMB5036]
gi|452078410|emb|CCP20160.1| DNA repair protein; 6-O-methylguanine-DNA methyltransferase
[Bacillus amyloliquefaciens subsp. plantarum UCMB5036]
Length = 459
Score = 365 bits (937), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 202/473 (42%), Positives = 287/473 (60%), Gaps = 32/473 (6%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLP------QKPE 165
++T ++C CGY +W G C C + TM + + P +R QKP
Sbjct: 4 SKTKFICHSCGYESAKWMGKCPGCGAWNTMVEETI---KKAPANRRAAFSHSVQTVQKPS 60
Query: 166 EVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLL 225
+ + E + +L+ E RVLGGG+V GSLVLIGGDPG+GKSTLLL
Sbjct: 61 PITSIETSEEPRVQTKLE-----------EFNRVLGGGVVKGSLVLIGGDPGIGKSTLLL 109
Query: 226 QMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQ 285
Q++A +AD V+Y+SGEESV+Q RADR+ I ++ L + S TD+E I +Q
Sbjct: 110 QVSAQLADT-----AGSVLYISGEESVKQTKLRADRLGINSQMLHVLSETDMEYISSAIQ 164
Query: 286 PLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDI 345
+ P +++DSIQTVY + + G + QV+ECT+ L++ AK IP+ + GHVTK G I
Sbjct: 165 EMKPAFVVVDSIQTVYQSDITSAPGSVSQVRECTAELMKIAKTNGIPIFIVGHVTKEGSI 224
Query: 346 AGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIF 405
AGPR+LEH+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM + GL V NPS+IF
Sbjct: 225 AGPRLLEHMVDTVLYFEGERHHTFRILRAVKNRFGSTNEMGIFEMREEGLTEVLNPSEIF 284
Query: 406 LSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISV 463
L E+ + + +G ++ M+G+R L+EIQAL S R GI +R +I++V
Sbjct: 285 LEERSAGA---SGSSIVASMEGTRPILVEIQALISPTSFGNPRRMATGIDHNRVSLIMAV 341
Query: 464 LMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGG 523
L K+ GL LQ +L V GV L E A DLAVA +I SSF + P FIGE+GL G
Sbjct: 342 LEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAVAVSIASSFRDTPPNPADCFIGEVGLTG 401
Query: 524 ELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVI 576
E+R VSR+E+RV AKLG+++ I+P++ A + +E +G N+ E +
Sbjct: 402 EVRRVSRIEQRVKEAAKLGFKRMIIPEANTDGWAIP--KGIEVVGVANVAEAL 452
>gi|335427928|ref|ZP_08554848.1| DNA repair protein RadA [Haloplasma contractile SSD-17B]
gi|334893854|gb|EGM32063.1| DNA repair protein RadA [Haloplasma contractile SSD-17B]
Length = 459
Score = 365 bits (936), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 195/470 (41%), Positives = 292/470 (62%), Gaps = 23/470 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T + CS+CG +W G C C S TM E + P L QK +P ++
Sbjct: 5 KTVFFCSECGNESLKWVGKCPGCGSWNTMV-----EEPKKPKSTTNGLFQKEHSHKPNKI 59
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
+N D I + E RVLGGG+V GSLVLIGGDPG+GKSTLLLQ+AA
Sbjct: 60 TTINT-----DDAIRYHTSY-QEFNRVLGGGIVRGSLVLIGGDPGIGKSTLLLQVAA--- 110
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
++G V+YV+GEES +QI NRA+R+ + ++L++YS + DI++ ++ L+P +
Sbjct: 111 ---NVGTKDTVLYVTGEESEQQIKNRAERLGLTPDQLYIYSENNTHDIIKHIELLNPSLV 167
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
I+DSIQTV++ + + G + QV+ECTS +R AK IP+ + GHVTK G IAGPRVLE
Sbjct: 168 IVDSIQTVFVPDITSAPGSVSQVRECTSNFMRLAKTKQIPIFIVGHVTKDGAIAGPRVLE 227
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EGE++++YR+LR+VKNRFGST+E+G+F+M + GL+ V NPS +FL ++
Sbjct: 228 HMVDTVLYFEGERYNTYRILRAVKNRFGSTNEIGIFDMKEKGLEEVLNPSGVFLEDR--- 284
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVLMKQAGL 470
S AG +V M+G+R L+EIQ+L S R GI ++ ++I+VL K+ GL
Sbjct: 285 SYGYAGASVVAAMEGTRPVLVEIQSLLSPTSFGNPKRMSQGIDYNKLSLLIAVLEKRLGL 344
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ ++ V GV L E A D+A+ +I SS+ + + FIGE+GL GE+R V+R
Sbjct: 345 LLQNQDAYIKVTGGVKLVEPAVDVAILCSIVSSYKDQSLSPYDIFIGEVGLTGEIRRVAR 404
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+E+R+ K+G+++ +P +KSL+ L + +G +++E++ F
Sbjct: 405 IEERIKEAHKMGFKRVFIPAKNKKSLS-LNLKDFTIVGVNDIEELVKNAF 453
>gi|404393638|ref|ZP_09319472.2| DNA repair protein RadA [Eubacteriaceae bacterium CM2]
gi|404278864|gb|EHL17298.2| DNA repair protein RadA [Eubacteriaceae bacterium CM2]
Length = 471
Score = 365 bits (936), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 197/467 (42%), Positives = 294/467 (62%), Gaps = 19/467 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T + C +CGY +WWG+C +C + GT+K + + + ++ L E+V P++L
Sbjct: 5 KTKYTCENCGYETSKWWGVCPSCSTAGTLKEEVYTQKSK-TIEKQVELIMLGEDVSPIKL 63
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
EV KG + + + + E RVLGGG+V GSLVLIGGDPG+GKST+LLQ+ I+
Sbjct: 64 SEV-KGQEYVRFSTGIK-----EFDRVLGGGIVSGSLVLIGGDPGIGKSTILLQLTNNIS 117
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
D + V+YVS EES+EQI RADR+ +L + + T++E I +++ + P +
Sbjct: 118 DRKN------VLYVSAEESLEQIKLRADRIFEKEADLLIIAQTNLEIIEKQILEIKPDVI 171
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQT+ + G + QVK+ + L++ KK NI + GHVTK G IAGPRVLE
Sbjct: 172 IIDSIQTISSTTLDSLPGSVSQVKDIANRLMKICKKENICCFIVGHVTKDGAIAGPRVLE 231
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EGEK++SYR++R+VKNRFGST+ELGVFEM+ GL V NPS+I LSE S+
Sbjct: 232 HLVDTVLYFEGEKYNSYRMIRAVKNRFGSTNELGVFEMTDRGLVEVDNPSRILLSENDSN 291
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVS--RHVNGIQASRADMIISVLMKQAGL 470
AG A+ ++G+R L+EIQ+L +S + S R GI +R +M+++VL K AG+
Sbjct: 292 E---AGTAIVSCVEGTRPMLVEIQSLVISTNFPSPRRTGTGIDYNRLNMLLAVLEKHAGI 348
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
+Q +++N+ G+ L E DL V AI SS+ P+ +A GE+GL GE+R VS
Sbjct: 349 LIQNYDVYVNLTGGIKLNEPFIDLGVIIAIASSYYNVPVKKLLAICGEVGLTGEIRNVSF 408
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVIN 577
++ R++ KLG+ + +VP S K + G +++ G KN+K+ ++
Sbjct: 409 VQNRINEAEKLGFEEILVPYSNLKDIKLKG-NKIKVTGVKNIKQALD 454
>gi|159896717|ref|YP_001542964.1| DNA repair protein RadA [Herpetosiphon aurantiacus DSM 785]
gi|159889756|gb|ABX02836.1| DNA repair protein RadA [Herpetosiphon aurantiacus DSM 785]
Length = 476
Score = 364 bits (935), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 206/441 (46%), Positives = 284/441 (64%), Gaps = 19/441 (4%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVR 171
RT +VC C +W G C C S ++ +S G T P E P+R
Sbjct: 4 QRTIFVCQQCDAQFPRWMGRCTECGSWDSLVEQVIAKS-AGTTGGSTRSPIGVSE--PLR 60
Query: 172 LLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAII 231
L ++ G Q R+P+ G +E ARVLGGG+VPGSLVLIGGDPG+GKSTLLL+ +A +
Sbjct: 61 LPDIQLGDVQ---RLPVRG---SEFARVLGGGIVPGSLVLIGGDPGIGKSTLLLEQSAAL 114
Query: 232 ADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRA 291
A+ V+Y+S EES +QI RA R+ ++ + L++ + T ++ + ++ + P
Sbjct: 115 AETA-----GDVLYISAEESQQQIKLRATRLGLSAQRLYILAETSLDTAIATIERMKPVL 169
Query: 292 LIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVL 351
+I+DSIQTVY V +AG + QV+E L R AK+ NI ++L GHVTK G IAGPRVL
Sbjct: 170 VIVDSIQTVYSESVTSAAGSVSQVREGALRLQRVAKQHNISIMLVGHVTKEGAIAGPRVL 229
Query: 352 EHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHS 411
EHIVD VLY+EGE+F YRLLRSVKNRFGST+E+GVFEM+Q G+ V+NPS+IFL+E+ +
Sbjct: 230 EHIVDVVLYLEGERFHQYRLLRSVKNRFGSTNEVGVFEMNQGGMVEVTNPSQIFLAERST 289
Query: 412 DSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVLMKQAG 469
+S G AVAV+++G+R L+E+QAL + + R NG +R MII+VL K+ G
Sbjct: 290 NS---PGSAVAVMLEGTRPLLLEVQALTSHTANAQPRRTANGFDQNRLAMIIAVLSKRVG 346
Query: 470 LKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVS 529
+ L I++NVV G+ +TE A DLAVA AI SSF + IGEIGL GELR VS
Sbjct: 347 VPLFNQDIYVNVVGGLKVTEPAIDLAVATAITSSFRNQRVEPNTVLIGEIGLSGELRSVS 406
Query: 530 RMEKRVSTVAKLGYRKCIVPK 550
++++R++ AKLG+ IVP+
Sbjct: 407 QLDRRLNEAAKLGFHNAIVPQ 427
>gi|456013239|gb|EMF46898.1| DNA repair protein RadA [Planococcus halocryophilus Or1]
Length = 828
Score = 364 bits (935), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 207/475 (43%), Positives = 294/475 (61%), Gaps = 30/475 (6%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKR---YSAGESDEGPVVQRTWLPQKPEEVQP 169
+T ++C CGY +W G C C S TM A + G +PQK P
Sbjct: 375 KTKFICQSCGYESARWMGKCPGCASWNTMTEEVEVQAPKGTRGAFQHSASVPQK---ATP 431
Query: 170 VRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAA 229
+ +E Q + R+ +E+ RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++A
Sbjct: 432 INAIET-----QDEPRVETEL---SELNRVLGGGIVPGSLVLIGGDPGIGKSTLLLQVSA 483
Query: 230 IIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSP 289
++A+ + V+Y+SGEES+ Q RA+R+ ++ ELF+Y+ T++E I ++ ++P
Sbjct: 484 MLAN-----SGNRVLYISGEESIRQTKLRAERLDASSSELFIYAETNLELIHHTIEDVAP 538
Query: 290 RALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPR 349
+IIDSIQTV+ V + G + QV+E T+ L+R AK NI + L GHVTK G IAGPR
Sbjct: 539 DFVIIDSIQTVHHPEVTSAPGSVTQVRESTAELMRIAKTKNIAIFLVGHVTKEGQIAGPR 598
Query: 350 VLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQ 409
+LEH+VD VLY EGE+ +YR+LRSVKNRFGST+E+ +FEM Q GL+ V NPS++FL E+
Sbjct: 599 ILEHMVDTVLYFEGERHHTYRILRSVKNRFGSTNEIAIFEMLQSGLKEVLNPSELFLQER 658
Query: 410 HSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMKQ 467
S S AG V M+G+R L+EIQAL S R GI +R ++++VL K+
Sbjct: 659 SSGS---AGSTVVASMEGTRPILVEIQALVTPSSFNYPKRMATGIDVNRVTLLMAVLEKR 715
Query: 468 AGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGI-AFIGEIGLGGELR 526
G+ LQ ++ V GV L E A DLAV A+I SSF + PN IGE+GL GE+R
Sbjct: 716 VGMLLQAQDAYIKVAGGVKLDEPAIDLAVLASIVSSFRD-KAPNVYDCIIGEVGLTGEVR 774
Query: 527 MVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGF-EQMEFIGCKNLKEVINVVF 580
VSR+E+RV AKLG+++ I+P S +L + E + +G +++ + + +F
Sbjct: 775 RVSRIEQRVQEAAKLGFKRAIIPAS---NLGGWDYPEGIRVVGVESVNDALKEIF 826
>gi|228995473|ref|ZP_04155142.1| DNA repair protein radA [Bacillus mycoides Rock3-17]
gi|228764277|gb|EEM13155.1| DNA repair protein radA [Bacillus mycoides Rock3-17]
Length = 458
Score = 364 bits (934), Expect = 8e-98, Method: Compositional matrix adjust.
Identities = 208/475 (43%), Positives = 292/475 (61%), Gaps = 28/475 (5%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQ--KPEEVQP 169
+T ++C +CGY ++ G C C T+ E ++ +R + E +P
Sbjct: 4 KKTKFICQECGYQSPKYMGKCPGCGQWNTL----VEEMEQVVSSRRINYANAIQTEVTKP 59
Query: 170 VRLLEV-NKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMA 228
RL EV K +++ + E RVLGGG+V GSLVLIGGDPG+GKSTLLLQ++
Sbjct: 60 RRLTEVETKSEARIETKF-------QEFNRVLGGGIVDGSLVLIGGDPGIGKSTLLLQIS 112
Query: 229 AIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLS 288
+ +AD V+Y+SGEES +QI RADR+ + LF+ S TD++ I + ++
Sbjct: 113 SQLAD-----SSYDVLYISGEESAKQIKLRADRLHVNGSNLFVVSETDLQRIAAHIDEMN 167
Query: 289 PRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGP 348
P ++IDSIQT+YL V + G + QV+ECT+ L++ AK IP+ + GHVTK G IAGP
Sbjct: 168 PSFVVIDSIQTIYLPEVTSAPGSVSQVRECTAELMKLAKTKGIPIFIVGHVTKEGAIAGP 227
Query: 349 RVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSE 408
R+LEH+VDAVLY EG++ +YR+LR+VKNRFGST+E+G+FEM +LGL V NPS+IFL E
Sbjct: 228 RMLEHMVDAVLYFEGDRHHTYRILRAVKNRFGSTNEMGIFEMKELGLAEVLNPSEIFLEE 287
Query: 409 QHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVLMK 466
+ +AG V M+G+R L+EIQAL S R GI +R +I++VL K
Sbjct: 288 RPVG---VAGSTVVASMEGTRPVLVEIQALISPTSFGNPRRMATGIDHNRVSLIMAVLEK 344
Query: 467 QAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELR 526
+AGL LQ +L V G+ L E A DLAVA +I SSF + P A IGE+GL GE+R
Sbjct: 345 RAGLLLQNQDAYLKVAGGLRLDEPAIDLAVALSIASSFRDKSTPPTDAVIGEVGLTGEVR 404
Query: 527 MVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGF-EQMEFIGCKNLKEVINVVF 580
VSR+E+RV AKLG+++ I+P +K+L E +E +G NL E + +
Sbjct: 405 RVSRIEQRVQEAAKLGFQRAIIP---QKNLGGWTIPEGIEVVGVSNLGEALRLTL 456
>gi|385267114|ref|ZP_10045201.1| DNA repair protein RadA [Bacillus sp. 5B6]
gi|385151610|gb|EIF15547.1| DNA repair protein RadA [Bacillus sp. 5B6]
Length = 459
Score = 364 bits (934), Expect = 8e-98, Method: Compositional matrix adjust.
Identities = 201/473 (42%), Positives = 286/473 (60%), Gaps = 32/473 (6%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLP------QKPE 165
++T ++C CGY +W G C C + TM + + P +R QKP
Sbjct: 4 SKTKFICHSCGYESAKWMGKCPGCGAWNTMVEETI---KKAPANRRAAFSHSVQTVQKPS 60
Query: 166 EVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLL 225
+ + E + +L+ E RVLGGG+V GSLVLIGGDPG+GKSTLLL
Sbjct: 61 PITSIETSEEPRVHTKLE-----------EFNRVLGGGVVKGSLVLIGGDPGIGKSTLLL 109
Query: 226 QMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQ 285
Q++A +AD V+Y+SGEESV+Q RADR+ I ++ L + S TD+E I +Q
Sbjct: 110 QVSAQLADT-----AGSVLYISGEESVKQTKLRADRLGINSQTLHVLSETDMEYISSAIQ 164
Query: 286 PLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDI 345
+ P +++DSIQTVY + + G + QV+ECT+ L++ AK IP+ + GHVTK G I
Sbjct: 165 EMKPAFVVVDSIQTVYQSDITSAPGSVSQVRECTAELMKIAKTNGIPIFIVGHVTKEGSI 224
Query: 346 AGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIF 405
AGPR+LEH+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM + GL V NPS+IF
Sbjct: 225 AGPRLLEHMVDTVLYFEGERHHTFRILRAVKNRFGSTNEMGIFEMREEGLTEVLNPSEIF 284
Query: 406 LSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISV 463
L E+ + + +G ++ M+G+R L+EIQAL S R GI +R +I++V
Sbjct: 285 LEERSAGA---SGSSIVASMEGTRPILVEIQALISPTSFGNPRRMATGIDHNRVSLIMAV 341
Query: 464 LMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGG 523
L K+ GL LQ +L V GV L E A DLAVA +I SSF + P FIGE+GL G
Sbjct: 342 LEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAVAVSIASSFRDTPPNPADCFIGEVGLTG 401
Query: 524 ELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVI 576
E+R VSR+E+RV AKLG+++ I+P++ + +E +G N+ E +
Sbjct: 402 EVRRVSRIEQRVKEAAKLGFKRMIIPEANADGWTIP--KGIEVVGVANVAEAL 452
>gi|421733019|ref|ZP_16172134.1| DNA repair protein RadA [Bacillus amyloliquefaciens subsp.
plantarum M27]
gi|407073060|gb|EKE46058.1| DNA repair protein RadA [Bacillus amyloliquefaciens subsp.
plantarum M27]
Length = 459
Score = 363 bits (933), Expect = 9e-98, Method: Compositional matrix adjust.
Identities = 201/473 (42%), Positives = 286/473 (60%), Gaps = 32/473 (6%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLP------QKPE 165
++T ++C CGY +W G C C + TM + + P +R QKP
Sbjct: 4 SKTKFICHSCGYESAKWMGKCPGCGAWNTMVEETI---KKAPANRRAAFSHSVQTVQKPS 60
Query: 166 EVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLL 225
+ + E + +L+ E RVLGGG+V GSLVLIGGDPG+GKSTLLL
Sbjct: 61 PITSIETSEEPRVQTKLE-----------EFNRVLGGGVVKGSLVLIGGDPGIGKSTLLL 109
Query: 226 QMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQ 285
Q++A +AD V+Y+SGEESV+Q RADR+ I ++ L + S TD+E I +Q
Sbjct: 110 QVSAQLADT-----AGSVLYISGEESVKQTKLRADRLGIKSQMLHVLSETDMEYISSAIQ 164
Query: 286 PLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDI 345
+ P +++DSIQTVY + + G + QV+ECT+ L++ AK IP+ + GHVTK G I
Sbjct: 165 EMKPAFVVVDSIQTVYQSDITSAPGSVSQVRECTAELMKIAKTNGIPIFIVGHVTKEGSI 224
Query: 346 AGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIF 405
AGPR+LEH+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM + GL V NPS+IF
Sbjct: 225 AGPRLLEHMVDTVLYFEGERHHTFRILRAVKNRFGSTNEMGIFEMREEGLTEVLNPSEIF 284
Query: 406 LSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISV 463
L E+ + + +G ++ M+G+R L+EIQAL S R GI +R +I++V
Sbjct: 285 LEERSAGA---SGSSIVASMEGTRPILVEIQALISPTSFGNPRRMATGIDHNRVSLIMAV 341
Query: 464 LMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGG 523
L K+ GL LQ +L V GV L E A DLAVA +I SSF + P FIGE+GL G
Sbjct: 342 LEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAVAVSIASSFRDTPPNPADCFIGEVGLTG 401
Query: 524 ELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVI 576
E+R VSR+E+RV AKLG+++ I+P++ + +E +G N+ E +
Sbjct: 402 EVRRVSRIEQRVKEAAKLGFKRMIIPEANADGWTIP--KGIEVVGVANVAEAL 452
>gi|403238379|ref|ZP_10916965.1| DNA repair protein RadA [Bacillus sp. 10403023]
Length = 456
Score = 363 bits (933), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 197/449 (43%), Positives = 276/449 (61%), Gaps = 36/449 (8%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKR-------YSAGESDEGPVVQRTWLP-QK 163
+T + C CGY +W G C C + T+ + P VQR P
Sbjct: 4 TKTKFTCQSCGYESPKWMGKCPGCNAWNTLVEEILQKPGRKGAFAHSSPTVQRKPSPITS 63
Query: 164 PEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTL 223
E V R+ NK E RVLGGG+V GSLVLIGGDPG+GKSTL
Sbjct: 64 IESVNEPRMYTTNK-----------------EFNRVLGGGIVKGSLVLIGGDPGIGKSTL 106
Query: 224 LLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEK 283
LLQ+++ L + + V+Y+SGEESV+Q R+DR+ +++++LF+ + TD+E I +
Sbjct: 107 LLQVSS------QLAKQNKVLYISGEESVKQTKLRSDRLGVSSDQLFVLAETDLEFISQT 160
Query: 284 VQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSG 343
+ L+P ++IDSIQT+Y +A + G + QV+ECT+ L+R AK I + + GHVTK G
Sbjct: 161 ITELNPSFVVIDSIQTIYHSEIASAPGSVSQVRECTAELMRIAKTNGIAIFIVGHVTKEG 220
Query: 344 DIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSK 403
+IAGPR+LEH+VD VLY EGE+ +YR+LR+VKNRFGST+E+G+FEM + GL+ V+NPS+
Sbjct: 221 NIAGPRLLEHMVDTVLYFEGERHHTYRILRAVKNRFGSTNEMGIFEMKETGLEEVANPSE 280
Query: 404 IFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMII 461
IFL E+ + + AG V M+G+R L+EIQAL S R GI +R +++
Sbjct: 281 IFLEERSAGA---AGSTVVASMEGTRPVLVEIQALISPSSFGNPRRMATGIDHNRVSLLM 337
Query: 462 SVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGL 521
+VL K+AG LQ +L V GV L E A DLAVA +I SSF + P IGE+GL
Sbjct: 338 AVLEKRAGFLLQNQDAYLKVAGGVKLDEPAIDLAVALSIASSFRDQPTNPADIIIGEVGL 397
Query: 522 GGELRMVSRMEKRVSTVAKLGYRKCIVPK 550
GE+R VSR+E+RV AKLG+++ I+P+
Sbjct: 398 TGEIRRVSRIEQRVQEAAKLGFKRVILPE 426
>gi|429503621|ref|YP_007184805.1| DNA repair protein RadA [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
gi|429485211|gb|AFZ89135.1| DNA repair protein RadA [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
Length = 459
Score = 363 bits (933), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 201/473 (42%), Positives = 286/473 (60%), Gaps = 32/473 (6%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLP------QKPE 165
++T ++C CGY +W G C C + TM + + P +R QKP
Sbjct: 4 SKTKFICHSCGYESAKWMGKCPGCGAWNTMVEETI---KKAPANRRAAFSHSVQTVQKPS 60
Query: 166 EVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLL 225
+ + E + +L+ E RVLGGG+V GSLVLIGGDPG+GKSTLLL
Sbjct: 61 PISSIETSEEPRVQTKLE-----------EFNRVLGGGVVKGSLVLIGGDPGIGKSTLLL 109
Query: 226 QMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQ 285
Q++A +AD V+Y+SGEESV+Q RADR+ I ++ L + S TD+E I +Q
Sbjct: 110 QVSAQLADT-----AGSVLYISGEESVKQTKLRADRLGINSQMLHVLSETDMEYISSAIQ 164
Query: 286 PLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDI 345
+ P +++DSIQTVY + + G + QV+ECT+ L++ AK IP+ + GHVTK G I
Sbjct: 165 EMKPAFVVVDSIQTVYQSDITSAPGSVSQVRECTAELMKIAKTNGIPIFIVGHVTKEGSI 224
Query: 346 AGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIF 405
AGPR+LEH+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM + GL V NPS+IF
Sbjct: 225 AGPRLLEHMVDTVLYFEGERHHTFRILRAVKNRFGSTNEMGIFEMREEGLTEVLNPSEIF 284
Query: 406 LSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISV 463
L E+ + + +G ++ M+G+R L+EIQAL S R GI +R +I++V
Sbjct: 285 LEERSAGA---SGSSIVASMEGTRPILVEIQALISPTSFGNPRRMATGIDHNRVSLIMAV 341
Query: 464 LMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGG 523
L K+ GL LQ +L V GV L E A DLAVA +I SSF + P FIGE+GL G
Sbjct: 342 LEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAVAVSIASSFRDTPPNPADCFIGEVGLTG 401
Query: 524 ELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVI 576
E+R VSR+E+RV AKLG+++ I+P++ + +E +G N+ E +
Sbjct: 402 EVRRVSRIEQRVKEAAKLGFKRMIIPEANADGWTIP--KGIEVVGVANVAEAL 452
>gi|375360777|ref|YP_005128816.1| radA-like DNA repair protein [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|371566771|emb|CCF03621.1| radA-like DNA repair protein [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
Length = 459
Score = 363 bits (933), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 201/473 (42%), Positives = 286/473 (60%), Gaps = 32/473 (6%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLP------QKPE 165
++T ++C CGY +W G C C + TM + + P +R QKP
Sbjct: 4 SKTKFICHSCGYESAKWMGKCPGCGAWNTMVEETI---KKAPANRRAAFSHSVQTVQKPS 60
Query: 166 EVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLL 225
+ + E + +L+ E RVLGGG+V GSLVLIGGDPG+GKSTLLL
Sbjct: 61 PITSIETSEEPRVQTKLE-----------EFNRVLGGGVVKGSLVLIGGDPGIGKSTLLL 109
Query: 226 QMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQ 285
Q++A +AD V+Y+SGEESV+Q RADR+ I ++ L + S TD+E I +Q
Sbjct: 110 QVSAQLADT-----AGSVLYISGEESVKQTKLRADRLGINSQMLHVLSETDMEYISSAIQ 164
Query: 286 PLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDI 345
+ P +++DSIQTVY + + G + QV+ECT+ L++ AK IP+ + GHVTK G I
Sbjct: 165 EMKPAFVVVDSIQTVYQSDITSAPGSVSQVRECTAELMKIAKTNGIPIFIVGHVTKEGSI 224
Query: 346 AGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIF 405
AGPR+LEH+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM + GL V NPS+IF
Sbjct: 225 AGPRLLEHMVDTVLYFEGERHHTFRILRAVKNRFGSTNEMGIFEMREEGLTEVLNPSEIF 284
Query: 406 LSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISV 463
L E+ + + +G ++ M+G+R L+EIQAL S R GI +R +I++V
Sbjct: 285 LEERSAGA---SGSSIVASMEGTRPILVEIQALISPTSFGNPRRMATGIDHNRVSLIMAV 341
Query: 464 LMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGG 523
L K+ GL LQ +L V GV L E A DLAVA +I SSF + P FIGE+GL G
Sbjct: 342 LEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAVAVSIASSFRDTPPNPADCFIGEVGLTG 401
Query: 524 ELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVI 576
E+R VSR+E+RV AKLG+++ I+P++ + +E +G N+ E +
Sbjct: 402 EVRRVSRIEQRVKEAAKLGFKRMIIPEANADGWTIP--KGIEVVGVANVAEAL 452
>gi|394994758|ref|ZP_10387465.1| DNA repair protein RadA [Bacillus sp. 916]
gi|393804325|gb|EJD65737.1| DNA repair protein RadA [Bacillus sp. 916]
Length = 459
Score = 363 bits (933), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 201/473 (42%), Positives = 286/473 (60%), Gaps = 32/473 (6%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLP------QKPE 165
++T ++C CGY +W G C C + TM + + P +R QKP
Sbjct: 4 SKTKFICHSCGYESAKWMGKCPGCGAWNTMVEETI---KKAPANRRAAFSHSVQTVQKPS 60
Query: 166 EVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLL 225
+ + E + +L+ E RVLGGG+V GSLVLIGGDPG+GKSTLLL
Sbjct: 61 PITSIETSEEPRVQTKLE-----------EFNRVLGGGVVKGSLVLIGGDPGIGKSTLLL 109
Query: 226 QMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQ 285
Q++A +AD V+Y+SGEESV+Q RADR+ I ++ L + S TD+E I +Q
Sbjct: 110 QVSAQLADT-----AGSVLYISGEESVKQTKLRADRLGINSQMLHVLSETDMEYISSAIQ 164
Query: 286 PLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDI 345
+ P +++DSIQTVY + + G + QV+ECT+ L++ AK IP+ + GHVTK G I
Sbjct: 165 EMKPAFVVVDSIQTVYQSDITSAPGSVSQVRECTAELMKIAKTNGIPIFIVGHVTKEGSI 224
Query: 346 AGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIF 405
AGPR+LEH+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM + GL V NPS+IF
Sbjct: 225 AGPRLLEHMVDTVLYFEGERHHTFRILRAVKNRFGSTNEMGIFEMREEGLTEVLNPSEIF 284
Query: 406 LSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISV 463
L E+ + + +G ++ M+G+R L+EIQAL S R GI +R +I++V
Sbjct: 285 LEERSAGA---SGSSIVASMEGTRPILVEIQALISPTSFGNPRRMATGIDHNRVSLIMAV 341
Query: 464 LMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGG 523
L K+ GL LQ +L V GV L E A DLAVA +I SSF + P FIGE+GL G
Sbjct: 342 LEKRGGLLLQNQDAYLKVAGGVKLDEPAIDLAVAVSIASSFRDTPPNPADCFIGEVGLTG 401
Query: 524 ELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVI 576
E+R VSR+E+RV AKLG+++ I+P++ + +E +G N+ E +
Sbjct: 402 EVRRVSRIEQRVKEAAKLGFKRMIIPEANADGWTIP--KGIEVVGVANVAEAL 452
>gi|440750006|ref|ZP_20929251.1| DNA repair protein RadA [Mariniradius saccharolyticus AK6]
gi|436481726|gb|ELP37888.1| DNA repair protein RadA [Mariniradius saccharolyticus AK6]
Length = 458
Score = 363 bits (933), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 197/473 (41%), Positives = 298/473 (63%), Gaps = 25/473 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQ---P 169
+T + C +CG +W G C +C G Y + V + TW +E + P
Sbjct: 5 KTTFFCQNCGAQSPKWIGKCPSC---GEWNTYVEEVIQKEEVGRGTWKASPAKEKRAAVP 61
Query: 170 VRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAA 229
RL E+N + P + E+ RVLGGG+VPGSLVLIGG+PG+GKSTL+LQ+A
Sbjct: 62 KRLQEINFEEQ------PRTVTKDAELDRVLGGGIVPGSLVLIGGEPGIGKSTLMLQIAL 115
Query: 230 IIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSP 289
+ + V+YVSGEES QI RADRM ++ ++ S T+ + I ++++ L P
Sbjct: 116 SLPQLK-------VLYVSGEESEAQIKMRADRMQQFSDNCYVLSETNTQQIFQQIELLEP 168
Query: 290 RALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPR 349
L+IDSIQT++ + V +AG + QV+ECT+ L++FAK+T +PV L GH+TK G IAGP+
Sbjct: 169 DLLVIDSIQTLHSQYVESAAGSVSQVRECTAELMKFAKETGVPVFLIGHITKDGSIAGPK 228
Query: 350 VLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQ 409
VLEH+VD VL EG++ SYR+LR+ KNRFGST+ELG++EM GL+ V+NPS+I L+++
Sbjct: 229 VLEHMVDTVLQFEGDRHLSYRILRTSKNRFGSTNELGIYEMRTDGLRPVANPSEILLTQR 288
Query: 410 HSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMKQ 467
E L G+A+ +++G+R LIEIQ+L + T R G + R +M+++VL K+
Sbjct: 289 E---EILNGVAIGAMLEGNRPLLIEIQSLVSPATYGTPQRSSTGFDSKRLNMLLAVLEKR 345
Query: 468 AGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRM 527
G++L + +FLNV G+ + + A DLAV A++ SS+ + P+P + F GE+GLGGE+R
Sbjct: 346 GGMRLGQQDVFLNVAGGLRVDDPALDLAVCASLISSYEDHPVPGDLCFAGEVGLGGEIRA 405
Query: 528 VSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
V R+E R++ KLG++K +V K A K L F +++ + ++EV +F
Sbjct: 406 VHRIENRIAEAEKLGFKKIMVSKYAVKGLDLKKF-KIQILQVSKMEEVYQRMF 457
>gi|384263717|ref|YP_005419424.1| radA-like DNA repair protein [Bacillus amyloliquefaciens subsp.
plantarum YAU B9601-Y2]
gi|387896614|ref|YP_006326910.1| DNA repair protein [Bacillus amyloliquefaciens Y2]
gi|380497070|emb|CCG48108.1| radA-like DNA repair protein [Bacillus amyloliquefaciens subsp.
plantarum YAU B9601-Y2]
gi|387170724|gb|AFJ60185.1| DNA repair protein [Bacillus amyloliquefaciens Y2]
Length = 459
Score = 363 bits (932), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 201/473 (42%), Positives = 286/473 (60%), Gaps = 32/473 (6%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLP------QKPE 165
++T ++C CGY +W G C C + TM + + P +R QKP
Sbjct: 4 SKTKFICHSCGYESAKWMGKCPGCGAWNTMVEETI---KKAPANRRAAFSHSVQTVQKPS 60
Query: 166 EVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLL 225
+ + E + +L+ E RVLGGG+V GSLVLIGGDPG+GKSTLLL
Sbjct: 61 PITSIETSEEPRVHTKLE-----------EFNRVLGGGVVKGSLVLIGGDPGIGKSTLLL 109
Query: 226 QMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQ 285
Q++A +AD V+Y+SGEESV+Q RADR+ I ++ L + S TD+E I +Q
Sbjct: 110 QVSAQLADT-----AGSVLYISGEESVKQTKLRADRLGINSQMLHVLSETDMEYISSAIQ 164
Query: 286 PLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDI 345
+ P +++DSIQTVY + + G + QV+ECT+ L++ AK IP+ + GHVTK G I
Sbjct: 165 EMKPAFVVVDSIQTVYQSDITSAPGSVSQVRECTAELMKIAKTNGIPIFIVGHVTKEGSI 224
Query: 346 AGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIF 405
AGPR+LEH+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM + GL V NPS+IF
Sbjct: 225 AGPRLLEHMVDTVLYFEGERHHTFRILRAVKNRFGSTNEMGIFEMREEGLTEVLNPSEIF 284
Query: 406 LSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISV 463
L E+ + + +G ++ M+G+R L+EIQAL S R GI +R +I++V
Sbjct: 285 LEERSAGA---SGSSIVASMEGTRPILVEIQALISPTSFGNPRRMATGIDHNRVSLIMAV 341
Query: 464 LMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGG 523
L K+ GL LQ +L V GV L E A DLAVA +I SSF + P FIGE+GL G
Sbjct: 342 LEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAVAVSIASSFRDTPPNPADCFIGEVGLTG 401
Query: 524 ELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVI 576
E+R VSR+E+RV AKLG+++ I+P++ + +E +G N+ E +
Sbjct: 402 EVRRVSRIEQRVKEAAKLGFKRMIIPEANADGWTIP--KGIEVVGVANVAEAL 452
>gi|310657475|ref|YP_003935196.1| repair protein radA homolog [[Clostridium] sticklandii]
gi|308824253|emb|CBH20291.1| repair protein radA homolog [[Clostridium] sticklandii]
Length = 453
Score = 363 bits (932), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 196/471 (41%), Positives = 287/471 (60%), Gaps = 26/471 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T ++C CGY +WWG+C C S G+M + + + +++ QK +++ V
Sbjct: 5 KTKYICQQCGYESAKWWGICPECNSGGSMVEEAYTQKETARAKKQSSHLQKSVDLKSVEG 64
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
E ++ + +E RVLGGG+V GSLVLIGGDPG+GKSTLLLQ+A
Sbjct: 65 TEADRFTTHI-----------SEFDRVLGGGIVRGSLVLIGGDPGIGKSTLLLQLA---- 109
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
H + + V+Y+SGEES +QI RA R+ + + + T+++ I ++ + P +
Sbjct: 110 --HHISKEKKVLYISGEESAQQIKLRASRLFSGDMNMLILAETNLDTIEGEILAVMPDVV 167
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
+IDS+QTV + G + QV+E T L+ AK NI L GHVTK G IAGPRVLE
Sbjct: 168 VIDSVQTVSSPELTSLPGSVSQVREATGRLMNIAKANNISCFLVGHVTKEGAIAGPRVLE 227
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EGE+F++YR++R+VKNRFGST+ELGVFEM+ GL VSNPSKI LSE
Sbjct: 228 HLVDTVLYFEGERFNTYRMIRAVKNRFGSTNELGVFEMTDKGLIEVSNPSKILLSEHSVG 287
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVS---RHVNGIQASRADMIISVLMKQAG 469
+ G A+ M+G+R L+EIQAL V+ +T + R GI +R +M+++VL ++AG
Sbjct: 288 A---PGTAIVCTMEGTRPMLVEIQAL-VAPTTFAVPRRTATGIDFNRLNMLLAVLERRAG 343
Query: 470 LKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVS 529
L++Q +++N+ G+ + E + DL +A A+ SSF I N +AF GEIGL GE+R VS
Sbjct: 344 LRIQSQDVYVNLTGGIKIYEPSLDLGIACAVASSFSNREIKNNVAFFGEIGLTGEIRSVS 403
Query: 530 RMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
EKR++ KLG+ + IVP S K L + ++ G K++K + F
Sbjct: 404 FGEKRINEALKLGFEEVIVPYSTAKDLKNIN--SIKITGVKDVKMALAEAF 452
>gi|433447285|ref|ZP_20410882.1| DNA repair protein RadA [Anoxybacillus flavithermus TNO-09.006]
gi|431999949|gb|ELK20856.1| DNA repair protein RadA [Anoxybacillus flavithermus TNO-09.006]
Length = 464
Score = 363 bits (932), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 201/470 (42%), Positives = 289/470 (61%), Gaps = 29/470 (6%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDE--GPVVQRTWLPQKPEEVQPV 170
+T +VC CGY +W G C C S M E E P + ++ + +PV
Sbjct: 5 KTKFVCQHCGYETAKWMGKCPGCHSWNAMV-----EETEIVKPHTRALFVHTEGGTTKPV 59
Query: 171 RLLEVNKGMK-QLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAA 229
+ V + ++D + E RVLGGG+V GSLVLIGGDPG+GKSTLLLQ+ A
Sbjct: 60 SITTVETTQEPRIDTKF-------TEFNRVLGGGIVRGSLVLIGGDPGIGKSTLLLQICA 112
Query: 230 IIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSP 289
+A + V+Y+SGEESV+Q RA+R+ + + L++ S T++E I++ V + P
Sbjct: 113 QLAS-----DDYSVLYISGEESVKQTKLRAERLHVTAKHLYVLSETNLEHIIQTVDEMKP 167
Query: 290 RALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPR 349
++IDSIQT+Y + + G + QV+ECT+ L+R AK I + + GHVTK G +AGPR
Sbjct: 168 AFVVIDSIQTIYRSEITSAPGSVSQVRECTAELMRLAKTKGIAIFIVGHVTKEGALAGPR 227
Query: 350 VLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQ 409
+LEH+VD VLY EGE+ +YR+LR+VKNRFGST+E+G+FEM ++GL V NPS+IFL E+
Sbjct: 228 ILEHMVDTVLYFEGERHHTYRILRAVKNRFGSTNEIGIFEMKEMGLTEVKNPSEIFLEER 287
Query: 410 HSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVLMKQ 467
S+ AG V M+G+R L+EIQAL S T R GI +R ++++VL K+
Sbjct: 288 ---SKGAAGSTVVASMEGTRPVLVEIQALVSPTSFGTPRRMATGIDHNRVSLLMAVLEKR 344
Query: 468 AGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRM 527
GL LQ +L V G+ L E A DLA+A +I SSF + P + IGE+GL GE+R
Sbjct: 345 VGLLLQNQDAYLKVAGGIKLDEPAIDLAIAVSIASSFRDQPTNHTDVVIGEVGLTGEVRR 404
Query: 528 VSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQ-MEFIGCKNLKEVI 576
VSR+E+RV AKLG+++ I+PKS ++ + +E IG N++E +
Sbjct: 405 VSRIEQRVQEAAKLGFQRIIIPKS---NIGGWNIPKGVEIIGIANVEEAL 451
>gi|308171977|ref|YP_003918682.1| DNA repair protein; 6-O-methylguanine-DNA methyltransferase
[Bacillus amyloliquefaciens DSM 7]
gi|384157700|ref|YP_005539773.1| DNA repair protein RadA [Bacillus amyloliquefaciens TA208]
gi|384162493|ref|YP_005543872.1| DNA repair protein; 6-O-methylguanine-DNA methyltransferase
[Bacillus amyloliquefaciens LL3]
gi|384166715|ref|YP_005548093.1| DNA repair protein RadA [Bacillus amyloliquefaciens XH7]
gi|307604841|emb|CBI41212.1| DNA repair protein; 6-O-methylguanine-DNA methyltransferase
[Bacillus amyloliquefaciens DSM 7]
gi|328551788|gb|AEB22280.1| DNA repair protein RadA [Bacillus amyloliquefaciens TA208]
gi|328910048|gb|AEB61644.1| DNA repair protein; 6-O-methylguanine-DNA methyltransferase
[Bacillus amyloliquefaciens LL3]
gi|341825994|gb|AEK87245.1| DNA repair protein RadA [Bacillus amyloliquefaciens XH7]
Length = 459
Score = 363 bits (931), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 200/473 (42%), Positives = 286/473 (60%), Gaps = 32/473 (6%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLP------QKPE 165
++T ++C CGY +W G C C + TM + + P +R QKP
Sbjct: 4 SKTKFICHSCGYESAKWMGKCPGCGAWNTMVEETI---KKAPANRRAAFSHSVQTVQKPS 60
Query: 166 EVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLL 225
+ + E + +L+ E RVLGGG+V GSLVLIGGDPG+GKSTLLL
Sbjct: 61 PITSIETSEEPRVQTKLE-----------EFNRVLGGGVVKGSLVLIGGDPGIGKSTLLL 109
Query: 226 QMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQ 285
Q++A +AD V+Y+SGEESV+Q RADR+ I ++ L + S TD+E I +Q
Sbjct: 110 QVSAQLADT-----AGSVLYISGEESVKQTKLRADRLGINSQLLHVLSETDMEYISSAIQ 164
Query: 286 PLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDI 345
+ P +++DSIQTVY + + G + QV+ECT+ L++ AK IP+ + GHVTK G I
Sbjct: 165 EMKPAFVVVDSIQTVYQSDITSAPGSVSQVRECTAELMKIAKTNGIPIFIVGHVTKEGSI 224
Query: 346 AGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIF 405
AGPR+LEH+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM + GL V NPS+IF
Sbjct: 225 AGPRLLEHMVDTVLYFEGERHHTFRILRAVKNRFGSTNEMGIFEMREEGLTEVLNPSEIF 284
Query: 406 LSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISV 463
L E+ + + +G ++ M+G+R L+EIQAL S R GI +R +I++V
Sbjct: 285 LEERSAGA---SGSSIVASMEGTRPILVEIQALISPTSFGNPRRMATGIDHNRVSLIMAV 341
Query: 464 LMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGG 523
L K+ GL LQ +L V GV L E A DLAVA +I SSF + P FIGE+GL G
Sbjct: 342 LEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAVAVSIASSFRDTPPNPADCFIGEVGLTG 401
Query: 524 ELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVI 576
E+R VSR+E+RV AKLG+++ ++P++ + +E +G N+ E +
Sbjct: 402 EVRRVSRIEQRVKEAAKLGFKRMVIPEANSDGWTIP--KGIEVVGVANVAEAL 452
>gi|452972568|gb|EME72397.1| DNA repair protein RadA [Bacillus sonorensis L12]
Length = 459
Score = 363 bits (931), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 205/471 (43%), Positives = 294/471 (62%), Gaps = 28/471 (5%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVV-QRTWLPQKPEEVQ-- 168
+T ++C CGY +W G C C + TM E+ + P +RT + VQ
Sbjct: 4 TKTKFICQSCGYESPKWMGKCPGCGAWNTM----VEETIKKPAANRRTAFSHSVQRVQKP 59
Query: 169 -PVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQM 227
P+ +E ++ + RI + G E RVLG G+V GSLVLIGGDPG+GKSTLLLQ+
Sbjct: 60 SPISSIETSE-----EPRIKTN--LG-EFNRVLGNGIVKGSLVLIGGDPGIGKSTLLLQV 111
Query: 228 AAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPL 287
+A +AD+++ V+Y+SGEESV+Q RADR+ I + L + S TD+E I ++ +
Sbjct: 112 SAQLADLNE-----NVLYISGEESVKQTKLRADRLGINSSTLHVLSETDMEYITSSIEEM 166
Query: 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAG 347
+P +++DSIQTVY + + G + QV+ECT+ L+R AK IP+ + GHVTK G IAG
Sbjct: 167 NPSFVVVDSIQTVYQSDITSAPGSVSQVRECTAELMRLAKTKGIPIFIVGHVTKEGSIAG 226
Query: 348 PRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLS 407
PR+LEH+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM + GL V NPS+IFL
Sbjct: 227 PRLLEHMVDTVLYFEGERHHTFRILRAVKNRFGSTNEMGIFEMREEGLTEVLNPSEIFLE 286
Query: 408 EQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVLM 465
E+ + + AG +V M+G+R L+EIQAL S R GI +R ++++VL
Sbjct: 287 ERSAGA---AGSSVVASMEGTRPVLVEIQALISPTSFGNPRRMATGIDHNRVSLLMAVLE 343
Query: 466 KQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGEL 525
K+ GL LQ +L V GV L E A DLAVA +I SSF + P FIGE+GL GE+
Sbjct: 344 KRVGLLLQNQDAYLKVAGGVKLDEPAIDLAVAVSIASSFRDTPPHPTDCFIGEVGLTGEV 403
Query: 526 RMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVI 576
R VSR+E+RV AKLG+++ I+P + + + +E +G +N+ E +
Sbjct: 404 RRVSRIEQRVQEAAKLGFKRMIIPAANLEGWTKP--KGIEVVGVENVAEAL 452
>gi|163846042|ref|YP_001634086.1| DNA repair protein RadA [Chloroflexus aurantiacus J-10-fl]
gi|163667331|gb|ABY33697.1| DNA repair protein RadA [Chloroflexus aurantiacus J-10-fl]
Length = 474
Score = 363 bits (931), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 207/447 (46%), Positives = 282/447 (63%), Gaps = 34/447 (7%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRAC-------ESVGTMKRYSAGESDEGPVVQRTWLPQKP 164
RT +VC CG +W G C C E + T R + G+ V Q
Sbjct: 11 TRTVFVCQQCGAQQSRWMGKCPECGAWDSLVEQIVTPARGTGGQR-AATVGQN------- 62
Query: 165 EEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLL 224
QP+RL +V Q R+P+ + E ARVLGGGLVPGS+VLIGGDPGVGKSTLL
Sbjct: 63 ---QPIRLRDVPLTDFQ---RLPV---YAEEFARVLGGGLVPGSVVLIGGDPGVGKSTLL 113
Query: 225 LQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKV 284
Q+AA H P +YVS EES +QI RA+R+ + ++LFL + T ++ I+E +
Sbjct: 114 GQVAA-----HFAASVGPALYVSAEESAQQIRLRAERLGLTADDLFLLAETSLDLIIEHI 168
Query: 285 QPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGD 344
+ L PR +I+DSIQTVYL + +AG + QV+E L++ AK+T IP++L GHVTK G
Sbjct: 169 RHLRPRLVIVDSIQTVYLPELTSAAGSVSQVREGALRLMQLAKETAIPIVLVGHVTKEGA 228
Query: 345 IAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKI 404
IAGPRVLEHIVD VLY+EG++F +RLLR KNRFGST+E+GVFEM+ GL+ V NPS++
Sbjct: 229 IAGPRVLEHIVDVVLYLEGDRFHQFRLLRGGKNRFGSTNEVGVFEMTGDGLREVRNPSQV 288
Query: 405 FLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIIS 462
FL+E+++ S G V V ++G+R L+E+QAL + R NG +R M+ +
Sbjct: 289 FLAERNTQS---PGSTVTVTLEGTRPLLVEVQALTSHTGNAQPRRTTNGFDLNRLLMLTA 345
Query: 463 VLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLG 522
VL K+ GL L +++N+V G+ + E A DLAVA AI SS+ I + +GEIGL
Sbjct: 346 VLSKRVGLPLFNQDLYVNIVGGLRIGEPAADLAVALAIASSYRNQRIDPDLVCLGEIGLS 405
Query: 523 GELRMVSRMEKRVSTVAKLGYRKCIVP 549
GELR VS++E+R+S AKLG+R+ IVP
Sbjct: 406 GELRSVSQLERRLSEAAKLGFRRAIVP 432
>gi|154684605|ref|YP_001419766.1| DNA repair protein RadA [Bacillus amyloliquefaciens FZB42]
gi|154350456|gb|ABS72535.1| RadA [Bacillus amyloliquefaciens FZB42]
Length = 459
Score = 363 bits (931), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 200/473 (42%), Positives = 286/473 (60%), Gaps = 32/473 (6%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLP------QKPE 165
++T ++C CGY +W G C C + TM + + P +R QKP
Sbjct: 4 SKTKFICHSCGYESAKWMGKCPGCGAWNTMVEETI---KKAPANRRAAFSHSVQTVQKPS 60
Query: 166 EVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLL 225
+ + E + +L+ E RVLGGG+V GSLVLIGGDPG+GKSTLLL
Sbjct: 61 PITSIETSEEPRVHTKLE-----------EFNRVLGGGVVKGSLVLIGGDPGIGKSTLLL 109
Query: 226 QMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQ 285
Q++A +AD V+Y+SGEESV+Q RADR+ I ++ L + S TD+E I +Q
Sbjct: 110 QVSAQLADT-----AGSVLYISGEESVKQTKLRADRLGINSQMLHVLSETDMEYISSAIQ 164
Query: 286 PLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDI 345
+ P +++DSIQTVY + + G + QV+ECT+ L++ AK IP+ + GHVTK G I
Sbjct: 165 EMKPAFVVVDSIQTVYQSDITSAPGSVSQVRECTAELMKIAKTNGIPIFIVGHVTKEGSI 224
Query: 346 AGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIF 405
AGPR+LEH+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM + GL V NPS+IF
Sbjct: 225 AGPRLLEHMVDTVLYFEGERHHTFRILRAVKNRFGSTNEMGIFEMREEGLTEVLNPSEIF 284
Query: 406 LSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISV 463
L E+ + + +G ++ M+G+R L+EIQAL S R GI +R +I++V
Sbjct: 285 LEERSAGA---SGSSIVASMEGTRPILVEIQALISPTSFGNPRRMATGIDHNRVSLIMAV 341
Query: 464 LMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGG 523
L K+ GL LQ +L V GV L E A DLAVA +I SSF + P FIGE+GL G
Sbjct: 342 LEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAVAVSIASSFRDTPPNPADCFIGEVGLTG 401
Query: 524 ELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVI 576
E+R VSR+E+RV AKLG+++ ++P++ + +E +G N+ E +
Sbjct: 402 EVRRVSRIEQRVKEAAKLGFKRMVIPEANADGWTIP--KGIEVVGVANVAEAL 452
>gi|392399093|ref|YP_006435694.1| DNA repair protein RadA [Flexibacter litoralis DSM 6794]
gi|390530171|gb|AFM05901.1| DNA repair protein RadA [Flexibacter litoralis DSM 6794]
Length = 461
Score = 362 bits (930), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 199/476 (41%), Positives = 290/476 (60%), Gaps = 23/476 (4%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQ--KPEEV 167
K +T + C +CG+ +W G C ACE T + E V++ W + +
Sbjct: 4 KKVKTAYFCQECGHESAKWMGKCSACEEWNTYVEEVVDKGAEKSDVKKLWQTDTGRRQSN 63
Query: 168 QPVRLLEVNKGMKQLDW-RIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQ 226
+P +L ++ K D+ RI E+ RVLG GLV GSLVLIGG+PG+GKSTL+LQ
Sbjct: 64 KPKKLADIEK----TDFARIST---HDGELNRVLGSGLVQGSLVLIGGEPGIGKSTLMLQ 116
Query: 227 MAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQP 286
+A + D V+YVSGEES +QI RA+R+ +E + + T+ ++I +++
Sbjct: 117 VALALKD-------HTVLYVSGEESEQQIKMRAERLEAYSENCLVLNETNTQNIFIQIEQ 169
Query: 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIA 346
P LIIDSIQT++ + SAG + QV+EC + LLRFAK+T PV L GH+TK G +A
Sbjct: 170 SKPDVLIIDSIQTLHTAHIESSAGSVSQVRECAAELLRFAKETGTPVFLIGHITKEGSLA 229
Query: 347 GPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFL 406
GP+VLEH+VD VL EG++ SYR+LR++KNRFGST ELG++EM GL+ VSNPS+I +
Sbjct: 230 GPKVLEHMVDTVLQFEGDRHMSYRILRTIKNRFGSTSELGIYEMQSTGLREVSNPSEILM 289
Query: 407 SEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVL 464
S++ E + G+ + M+G+R LIE+Q+L + T R G A R +M+++VL
Sbjct: 290 SQR---DEVIGGITIGTTMEGNRPLLIEVQSLVSIAAYGTPQRSSTGFDAKRLNMLLAVL 346
Query: 465 MKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGE 524
K+ G +L +FLN+ G + + A DLAV A++ SS I + I F E+GLGGE
Sbjct: 347 EKRGGFRLGTQDVFLNIAGGFKIEDPAIDLAVCASLISSLENSAISSDICFAAEVGLGGE 406
Query: 525 LRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+R V R+E+R+S AKLG+R+ +V K K L F+ +E K L++VI +VF
Sbjct: 407 IRAVQRIEQRISEAAKLGFRQIVVSKYNIKGLDLKKFD-IEVKIAKTLEDVIKLVF 461
>gi|228989290|ref|ZP_04149282.1| DNA repair protein radA [Bacillus pseudomycoides DSM 12442]
gi|228770443|gb|EEM19015.1| DNA repair protein radA [Bacillus pseudomycoides DSM 12442]
Length = 458
Score = 362 bits (929), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 208/475 (43%), Positives = 291/475 (61%), Gaps = 28/475 (5%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQ--KPEEVQP 169
+T ++C +CGY ++ G C C T+ E ++ +R + E +P
Sbjct: 4 KKTKFICQECGYQSPKYMGKCPGCGQWNTL----VEEMEQVVSSRRINYANAIQTEVTKP 59
Query: 170 VRLLEV-NKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMA 228
RL EV K +++ + E RVLGGG+V GSLVLIGGDPG+GKSTLLLQ++
Sbjct: 60 RRLTEVETKSEARIETKF-------QEFNRVLGGGIVDGSLVLIGGDPGIGKSTLLLQIS 112
Query: 229 AIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLS 288
+ +AD V+Y+SGEES +QI RADR+ + LF+ S TD++ I + ++
Sbjct: 113 SQLAD-----SSYDVLYISGEESAKQIKLRADRLHVNGSNLFVVSETDLQRIAAHIDEMN 167
Query: 289 PRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGP 348
P ++IDSIQT+YL V + G + QV+ECT+ L++ AK IP+ + GHVTK G IAGP
Sbjct: 168 PSFVVIDSIQTIYLPEVTSAPGSVSQVRECTAELMKLAKTKGIPIFIVGHVTKEGAIAGP 227
Query: 349 RVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSE 408
R+LEH+VDAVLY EG++ +YR+LR+VKNRFGST+E+G+FEM +LGL V NPS+IFL E
Sbjct: 228 RMLEHMVDAVLYFEGDRHHTYRILRAVKNRFGSTNEMGIFEMKELGLAEVLNPSEIFLEE 287
Query: 409 QHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVLMK 466
+ +AG V M+G+R L+EIQAL S R GI +R +I++VL K
Sbjct: 288 RPVG---VAGSTVVASMEGTRPVLVEIQALISPTSFGNPRRMATGIDHNRVSLIMAVLEK 344
Query: 467 QAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELR 526
+AGL LQ +L V G+ L E A DLAVA +I SSF + A IGE+GL GE+R
Sbjct: 345 RAGLLLQNQDAYLKVAGGLRLDEPAIDLAVALSIASSFRDKSTAPTDAVIGEVGLTGEVR 404
Query: 527 MVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGF-EQMEFIGCKNLKEVINVVF 580
VSR+E+RV AKLG+++ I+PK K+L E +E +G NL E + +
Sbjct: 405 RVSRIEQRVQEAAKLGFQRAIIPK---KNLGGWTIPEGIEVVGVSNLGEALRLTL 456
>gi|229015485|ref|ZP_04172483.1| DNA repair protein radA [Bacillus cereus AH1273]
gi|229021694|ref|ZP_04178276.1| DNA repair protein radA [Bacillus cereus AH1272]
gi|423421751|ref|ZP_17398840.1| DNA repair protein RadA [Bacillus cereus BAG3X2-1]
gi|228739562|gb|EEL89976.1| DNA repair protein radA [Bacillus cereus AH1272]
gi|228745772|gb|EEL95776.1| DNA repair protein radA [Bacillus cereus AH1273]
gi|401096870|gb|EJQ04907.1| DNA repair protein RadA [Bacillus cereus BAG3X2-1]
Length = 458
Score = 362 bits (929), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 206/477 (43%), Positives = 291/477 (61%), Gaps = 32/477 (6%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQ----KPEEV 167
+T + C +CGY ++ G C C T+ + PVV L + E
Sbjct: 4 KKTKFTCQECGYQSPKYMGKCPGCGQWNTLV------EEMEPVVSSRRLNYANAIQSEVT 57
Query: 168 QPVRLLEV-NKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQ 226
+P RL EV K +++ + E RVLGGG+V GSLVLIGGDPG+GKSTLLLQ
Sbjct: 58 KPRRLTEVETKSEARIETKF-------QEFNRVLGGGIVDGSLVLIGGDPGIGKSTLLLQ 110
Query: 227 MAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQP 286
+++ +AD V+Y+SGEES +QI RADR+ + LF+ + TD++ I ++
Sbjct: 111 ISSQLAD-----SSYDVLYISGEESAKQIKLRADRLHVKGSNLFVVAETDLQRIASHIEE 165
Query: 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIA 346
++P ++IDSIQT++L V + G + QV+ECT+ L++ AK IP+ + GHVTK G IA
Sbjct: 166 MNPAFVVIDSIQTIHLPEVTSAPGSVAQVRECTAELMKLAKTKGIPIFIVGHVTKEGAIA 225
Query: 347 GPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFL 406
GPR+LEH+VDAVLY EG++ +YR+LR+VKNRFGST+E+G+FEM +LGL V NPS+IFL
Sbjct: 226 GPRMLEHMVDAVLYFEGDRHHTYRILRAVKNRFGSTNEMGIFEMKELGLAEVLNPSEIFL 285
Query: 407 SEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVL 464
E+ +AG V M+G+R L+EIQAL S R GI +R +I++VL
Sbjct: 286 EERPVG---VAGSTVVASMEGTRPVLVEIQALISPTSFGNPRRMATGIDHNRVSLIMAVL 342
Query: 465 MKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGE 524
K+ GL LQ +L V G+ L E A DLAVA +I SSF + P A IGE+GL GE
Sbjct: 343 EKRTGLLLQNQDAYLKVAGGLKLDEPAIDLAVALSIASSFRDKPTAPTDAVIGEVGLTGE 402
Query: 525 LRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGF-EQMEFIGCKNLKEVINVVF 580
+R VSR+E+RV AKLG+++ I+P+ K+L + +E +G NL E + +
Sbjct: 403 IRRVSRIEQRVQEAAKLGFQRAIIPR---KNLGGWTIPDGIEVVGVSNLGEALRLTL 456
>gi|229083401|ref|ZP_04215750.1| DNA repair protein radA [Bacillus cereus Rock3-44]
gi|228699910|gb|EEL52546.1| DNA repair protein radA [Bacillus cereus Rock3-44]
Length = 458
Score = 362 bits (929), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 208/473 (43%), Positives = 290/473 (61%), Gaps = 26/473 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQ--KPEEVQPV 170
+T ++C +CGY ++ G C C T+ E ++ +R + E +P
Sbjct: 5 KTKFICQECGYQSPKYMGKCPGCGQWNTL----VEEMEQVVSSRRINYANAIQTEVTKPR 60
Query: 171 RLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAI 230
RL EV + RI E RVLGGG+V GSLVLIGGDPG+GKSTLLLQ+++
Sbjct: 61 RLTEVETNS---EARIETKF---QEFNRVLGGGIVDGSLVLIGGDPGIGKSTLLLQISSQ 114
Query: 231 IADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPR 290
+AD V+Y+SGEES +QI RADR+ + LF+ S TD++ I + ++P
Sbjct: 115 LAD-----SSYDVLYISGEESAKQIKLRADRLHVNGSNLFVVSETDLQRIAAHIDEMNPS 169
Query: 291 ALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRV 350
++IDSIQT+YL V + G + QV+ECT+ L++ AK IP+ + GHVTK G IAGPR+
Sbjct: 170 FVVIDSIQTIYLPEVTSAPGSVSQVRECTAELMKLAKTKGIPIFIVGHVTKEGAIAGPRM 229
Query: 351 LEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQH 410
LEH+VDAVLY EG++ +YR+LR+VKNRFGST+E+G+FEM +LGL V NPS+IFL E+
Sbjct: 230 LEHMVDAVLYFEGDRHHTYRILRAVKNRFGSTNEMGIFEMKELGLAEVLNPSEIFLEERP 289
Query: 411 SDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVLMKQA 468
+AG V M+G+R L+EIQAL S R GI +R +I++VL K+A
Sbjct: 290 VG---VAGSTVVASMEGTRPVLVEIQALISPTSFGNPRRMATGIDHNRVSLIMAVLEKRA 346
Query: 469 GLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMV 528
GL LQ +L V G+ L E A DLAVA +I SSF + P A IGE+GL GE+R V
Sbjct: 347 GLLLQNQDAYLKVAGGLKLDEPAIDLAVALSIASSFRDKPTAPTDAVIGEVGLTGEVRRV 406
Query: 529 SRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGF-EQMEFIGCKNLKEVINVVF 580
SR+E+RV AKLG+++ I+P+ K+L + +E +G NL E + +
Sbjct: 407 SRIEQRVQEAAKLGFQRAIIPR---KNLGGWTIPDGIEVVGVSNLGEALRLTL 456
>gi|323490587|ref|ZP_08095792.1| DNA repair protein RadA [Planococcus donghaensis MPA1U2]
gi|323395679|gb|EGA88520.1| DNA repair protein RadA [Planococcus donghaensis MPA1U2]
Length = 458
Score = 362 bits (929), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 204/476 (42%), Positives = 291/476 (61%), Gaps = 30/476 (6%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKR---YSAGESDEGPVVQRTWLPQKPEEVQ 168
+T ++C CGY +W G C C S TM A + G +PQK +
Sbjct: 4 KKTKFICQSCGYESARWMGKCPGCASWNTMTEEVEVQAPKGTRGSFQHSASVPQKATPIN 63
Query: 169 PVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMA 228
+ + + +L +E+ RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++
Sbjct: 64 AIETQDEPRVETEL-----------SELNRVLGGGIVPGSLVLIGGDPGIGKSTLLLQVS 112
Query: 229 AIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLS 288
A++A+ + V+Y+SGEES+ Q RA+R+ + ELF+Y+ T++E I ++ ++
Sbjct: 113 AMLANGGNR-----VLYISGEESIRQTKLRAERLDATSSELFIYAETNLELIHHTIEEVA 167
Query: 289 PRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGP 348
P +I+DSIQTV+ V + G + QV+E T+ L+R AK NI + L GHVTK G IAGP
Sbjct: 168 PDFVIVDSIQTVHHPEVTSAPGSVTQVRESTAELMRIAKTKNIAIFLVGHVTKEGQIAGP 227
Query: 349 RVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSE 408
R+LEH+VD VLY EGE+ +YR+LRSVKNRFGST+E+ +FEM Q GL+ V NPS++FL E
Sbjct: 228 RILEHMVDTVLYFEGERHHTYRILRSVKNRFGSTNEIAIFEMLQSGLKEVLNPSELFLQE 287
Query: 409 QHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMK 466
+ S S AG V M+G+R L+EIQAL S R GI +R ++++VL K
Sbjct: 288 RSSGS---AGSTVVASMEGTRPILVEIQALVTPSSFNYPKRMATGIDVNRVTLLMAVLEK 344
Query: 467 QAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGI-AFIGEIGLGGEL 525
+ G+ LQ ++ V GV L E A DLAV A+I SSF + PN IGE+GL GE+
Sbjct: 345 RVGMLLQAQDAYIKVAGGVKLDEPAIDLAVLASIVSSFRD-KAPNVYDCIIGEVGLTGEV 403
Query: 526 RMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGF-EQMEFIGCKNLKEVINVVF 580
R VSR+E+RV AKLG+++ I+P S +L F E + +G +++ + + +F
Sbjct: 404 RRVSRIEQRVQEAAKLGFKRAIIPAS---NLGGWDFPEGIRVVGVESVNDALKEIF 456
>gi|229027930|ref|ZP_04184083.1| DNA repair protein radA [Bacillus cereus AH1271]
gi|423462643|ref|ZP_17439437.1| DNA repair protein RadA [Bacillus cereus BAG5X2-1]
gi|228733318|gb|EEL84147.1| DNA repair protein radA [Bacillus cereus AH1271]
gi|401130822|gb|EJQ38478.1| DNA repair protein RadA [Bacillus cereus BAG5X2-1]
Length = 458
Score = 362 bits (928), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 206/477 (43%), Positives = 291/477 (61%), Gaps = 32/477 (6%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQ----KPEEV 167
+T + C +CGY ++ G C C T+ + PVV L + E
Sbjct: 4 KKTKFTCQECGYQSPKYMGKCPGCGQWNTLV------EEMEPVVSSRRLNYANAIQSEVT 57
Query: 168 QPVRLLEV-NKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQ 226
+P RL EV K +++ + E RVLGGG+V GSLVLIGGDPG+GKSTLLLQ
Sbjct: 58 KPRRLTEVETKSEARIETKF-------QEFNRVLGGGIVDGSLVLIGGDPGIGKSTLLLQ 110
Query: 227 MAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQP 286
+++ +AD V+Y+SGEES +QI RADR+ + LF+ + TD++ I ++
Sbjct: 111 ISSQLAD-----SSYDVLYISGEESAKQIKLRADRLHVKGSNLFVVAETDLQRIAAHIEE 165
Query: 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIA 346
++P ++IDSIQT++L V + G + QV+ECT+ L++ AK IP+ + GHVTK G IA
Sbjct: 166 MNPAFVVIDSIQTIHLPEVTSAPGSVAQVRECTAELMKLAKTKGIPIFIVGHVTKEGAIA 225
Query: 347 GPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFL 406
GPR+LEH+VDAVLY EG++ +YR+LR+VKNRFGST+E+G+FEM +LGL V NPS+IFL
Sbjct: 226 GPRMLEHMVDAVLYFEGDRHHTYRILRAVKNRFGSTNEMGIFEMKELGLAEVLNPSEIFL 285
Query: 407 SEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVL 464
E+ +AG V M+G+R L+EIQAL S R GI +R +I++VL
Sbjct: 286 EERPVG---VAGSTVVASMEGTRPVLVEIQALISPTSFGNPRRMATGIDHNRVSLIMAVL 342
Query: 465 MKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGE 524
K+ GL LQ +L V G+ L E A DLAVA +I SSF + P A IGE+GL GE
Sbjct: 343 EKRTGLLLQNQDAYLKVAGGLKLDEPAIDLAVALSIASSFRDKPTTPTDAVIGEVGLTGE 402
Query: 525 LRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGF-EQMEFIGCKNLKEVINVVF 580
+R VSR+E+RV AKLG+++ I+P+ K+L + +E +G NL E + +
Sbjct: 403 IRRVSRIEQRVQEAAKLGFQRAIIPR---KNLGGWTIPDGIEVVGVSNLGEALRLTL 456
>gi|217965680|ref|YP_002351358.1| DNA repair protein RadA [Listeria monocytogenes HCC23]
gi|290892626|ref|ZP_06555619.1| DNA repair protein RadA [Listeria monocytogenes FSL J2-071]
gi|386006962|ref|YP_005925240.1| DNA repair protein [Listeria monocytogenes L99]
gi|386025543|ref|YP_005946319.1| DNA repair protein [Listeria monocytogenes M7]
gi|404406686|ref|YP_006689401.1| DNA repair protein [Listeria monocytogenes SLCC2376]
gi|217334950|gb|ACK40744.1| DNA repair protein RadA [Listeria monocytogenes HCC23]
gi|290557935|gb|EFD91456.1| DNA repair protein RadA [Listeria monocytogenes FSL J2-071]
gi|307569772|emb|CAR82951.1| DNA repair protein [Listeria monocytogenes L99]
gi|336022124|gb|AEH91261.1| DNA repair protein [Listeria monocytogenes M7]
gi|404240835|emb|CBY62235.1| DNA repair protein [Listeria monocytogenes SLCC2376]
Length = 457
Score = 362 bits (928), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 194/448 (43%), Positives = 279/448 (62%), Gaps = 22/448 (4%)
Query: 109 GKANRTN-WVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEV 167
KA RT +VC CGY +W G C C M T P K
Sbjct: 2 AKAKRTTKFVCQACGYESAKWMGKCPNCNEWNQMVEALEPSKKSRSAFNHTGEPSK---A 58
Query: 168 QPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQM 227
P+ +E ++ K+++ +P E+ RVLGGG+VPGS+VL+GGDPG+GKSTLLLQ+
Sbjct: 59 TPITQIE-SETEKRVETNMP-------ELNRVLGGGVVPGSMVLVGGDPGIGKSTLLLQV 110
Query: 228 AAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPL 287
+A + + V+Y+SGEES++Q RA+R+ ++ + L++Y+ T++E + E + +
Sbjct: 111 SAQLTLTN-----KKVLYISGEESIKQTKLRAERLQVSGDNLYVYAETNLEAVQETIDFV 165
Query: 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAG 347
P ++IDSIQTVY V +AG + QV+ECT+AL+R AK NI + + GHVTK G IAG
Sbjct: 166 KPDFVVIDSIQTVYHPDVTSAAGSVSQVRECTAALMRIAKMQNIAIFIVGHVTKEGAIAG 225
Query: 348 PRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLS 407
PR+LEH+VD VLY EGE+ +YR+LR+VKNRFGST+E+G+FEM +GL V+NPS++FL
Sbjct: 226 PRLLEHMVDTVLYFEGERHHAYRILRAVKNRFGSTNEMGIFEMRDVGLVEVANPSEVFLE 285
Query: 408 EQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLM 465
E+ E +G V M+G+R L+EIQAL R GI ++ +I++VL
Sbjct: 286 ERL---EGASGSTVVASMEGTRPVLVEIQALVSPTMFGNAKRMATGIDYNKVSLIMAVLE 342
Query: 466 KQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGEL 525
K+ GL LQ +L GV L E A DLAVA ++ SS+ + P + FIGE+GL GE+
Sbjct: 343 KRVGLMLQNQDAYLKAAGGVKLDEPAVDLAVAVSVASSYRDKPTRSTDCFIGELGLTGEI 402
Query: 526 RMVSRMEKRVSTVAKLGYRKCIVPKSAE 553
R V+R+E+RV AKLG+++ +PK+ E
Sbjct: 403 RRVARIEQRVQEAAKLGFKRIFIPKNNE 430
>gi|423393464|ref|ZP_17370690.1| DNA repair protein RadA [Bacillus cereus BAG1X1-3]
gi|401629571|gb|EJS47384.1| DNA repair protein RadA [Bacillus cereus BAG1X1-3]
Length = 458
Score = 362 bits (928), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 206/477 (43%), Positives = 291/477 (61%), Gaps = 32/477 (6%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQ----KPEEV 167
+T + C +CGY ++ G C C T+ + PVV L + E
Sbjct: 4 KKTKFTCQECGYQSPKYMGKCPGCGQWNTLV------EEMEPVVSSRRLNYANAIQSEVT 57
Query: 168 QPVRLLEV-NKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQ 226
+P RL EV K +++ + E RVLGGG+V GSLVLIGGDPG+GKSTLLLQ
Sbjct: 58 KPRRLTEVETKSEARIETKF-------QEFNRVLGGGIVDGSLVLIGGDPGIGKSTLLLQ 110
Query: 227 MAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQP 286
+++ +AD V+Y+SGEES +QI RADR+ + LF+ + TD++ I ++
Sbjct: 111 ISSQLAD-----SSYDVLYISGEESAKQIKLRADRLHVRGSNLFVVAETDLQRIASHIEE 165
Query: 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIA 346
++P ++IDSIQT++L V + G + QV+ECT+ L++ AK IP+ + GHVTK G IA
Sbjct: 166 MNPAFVVIDSIQTIHLPEVTSAPGSVAQVRECTAELMKLAKTKGIPIFIVGHVTKEGAIA 225
Query: 347 GPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFL 406
GPR+LEH+VDAVLY EG++ +YR+LR+VKNRFGST+E+G+FEM +LGL V NPS+IFL
Sbjct: 226 GPRMLEHMVDAVLYFEGDRHHTYRILRAVKNRFGSTNEMGIFEMKELGLAEVLNPSEIFL 285
Query: 407 SEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVL 464
E+ +AG V M+G+R L+EIQAL S R GI +R +I++VL
Sbjct: 286 EERPVG---VAGSTVVASMEGTRPVLVEIQALISPTSFGNPRRMATGIDHNRVSLIMAVL 342
Query: 465 MKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGE 524
K+ GL LQ +L V G+ L E A DLAVA +I SSF + P A IGE+GL GE
Sbjct: 343 EKRTGLLLQNQDAYLKVAGGLKLDEPAIDLAVALSIASSFRDKPTAPTDAVIGEVGLTGE 402
Query: 525 LRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGF-EQMEFIGCKNLKEVINVVF 580
+R VSR+E+RV AKLG+++ I+P+ K+L + +E +G NL E + +
Sbjct: 403 IRRVSRIEQRVQEAAKLGFQRAIIPR---KNLGGWTIPDGIEVVGVSNLGEALRLTL 456
>gi|152973930|ref|YP_001373447.1| DNA repair protein RadA [Bacillus cytotoxicus NVH 391-98]
gi|152022682|gb|ABS20452.1| DNA repair protein RadA [Bacillus cytotoxicus NVH 391-98]
Length = 458
Score = 362 bits (928), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 209/477 (43%), Positives = 294/477 (61%), Gaps = 32/477 (6%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQ---KPEEVQ 168
+T ++C +CGY ++ G C C T+ E E V R + E +
Sbjct: 4 KKTKFICQECGYQSPKYMGRCPGCGQWNTLV-----EEIEQVVSSRRLNYANAIQTEVTK 58
Query: 169 PVRLLEV-NKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQM 227
P RL+EV K +++ + E RVLGGG+V GSLVLIGGDPG+GKSTLLLQ+
Sbjct: 59 PRRLIEVETKSEARIETQF-------QEFNRVLGGGIVDGSLVLIGGDPGIGKSTLLLQI 111
Query: 228 AAIIAD-VHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQP 286
++ +A+ +D V+Y+SGEES +QI RADR+ + LF+ S TD++ I ++
Sbjct: 112 SSQLANSAYD------VLYISGEESAKQIKLRADRLHVNGRNLFVVSETDLQRIATHIEE 165
Query: 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIA 346
++P ++IDSIQT+YL V + G + QV+ECT+ L++ AK IP+ + GHVTK G IA
Sbjct: 166 MNPSFVVIDSIQTIYLPEVTSAPGSVAQVRECTAELMKLAKTKGIPIFIVGHVTKEGAIA 225
Query: 347 GPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFL 406
GPR+LEH+VDAVLY EG++ +YR+LR+VKNRFGST+E+G+FEM +LGL V NPS+IFL
Sbjct: 226 GPRMLEHMVDAVLYFEGDRHHTYRILRAVKNRFGSTNEMGIFEMKELGLAEVLNPSEIFL 285
Query: 407 SEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVL 464
E+ +AG V M+G+R L+EIQAL S R GI +R +I++VL
Sbjct: 286 EERPVG---VAGSTVVASMEGTRPVLVEIQALISPTSFGNPRRMATGIDHNRVSLIMAVL 342
Query: 465 MKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGE 524
K+AGL LQ +L V G+ L E A DLAVA +I SSF + A IGE+GL GE
Sbjct: 343 EKRAGLLLQNQDAYLKVAGGLKLDEPAIDLAVAISIASSFRDKSTAPTDAVIGEVGLTGE 402
Query: 525 LRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGF-EQMEFIGCKNLKEVINVVF 580
+R VSR+E+RV AKLG+++ I+P+ K+L E +E +G NL E + +
Sbjct: 403 IRRVSRIEQRVQEAAKLGFQRAIIPR---KNLGGWTIPEGIEVVGVSNLGEALRLTL 456
>gi|149183496|ref|ZP_01861924.1| predicted repair protein [Bacillus sp. SG-1]
gi|148848790|gb|EDL63012.1| predicted repair protein [Bacillus sp. SG-1]
Length = 458
Score = 362 bits (928), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 201/473 (42%), Positives = 289/473 (61%), Gaps = 24/473 (5%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTM--KRYSAGESDEGPVVQRTWLPQKPEEVQP 169
+T ++C CGY +W G C C M + G+ G + + Q P + +
Sbjct: 4 KKTKFMCQSCGYESAKWMGRCPGCSEWNKMVEEVEITGKQPRGAF--KHSVQQGPSKAEK 61
Query: 170 VRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAA 229
+ +E + P E+ RVLGGG+VPGSL+LIGGDPG+GKSTLLLQ+++
Sbjct: 62 LISIESRQE--------PRVETDSQELNRVLGGGVVPGSLILIGGDPGIGKSTLLLQVSS 113
Query: 230 IIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSP 289
+A+ V+Y+SGEES++Q RADR+ I ++L++Y+ T++E I ++ L+P
Sbjct: 114 QLAE-----GKHKVLYISGEESIKQTKLRADRLEIKADDLYIYAETNLEAIHGTIEELAP 168
Query: 290 RALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPR 349
+I+DSIQT++ V + G + QV+ECT+ L+R AK I + + GHVTK G IAGPR
Sbjct: 169 EFVIVDSIQTIFHPEVTSAPGSVSQVRECTAELMRIAKTKGIAIFIVGHVTKEGSIAGPR 228
Query: 350 VLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQ 409
+LEH+VD VLY EGE+ +YR+LR+VKNRFGST+E+G+FEM +LGL+ V+NPS+IFL E+
Sbjct: 229 LLEHMVDTVLYFEGERHHAYRILRAVKNRFGSTNEMGIFEMKELGLEEVANPSEIFLEER 288
Query: 410 HSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVLMKQ 467
S+ AG V M+G+R L+EIQAL S + R GI S+ +I++VL K+
Sbjct: 289 ---SQGAAGSTVVASMEGTRPVLVEIQALVTPTSFNNPRRMATGIDHSKVSLIMAVLEKR 345
Query: 468 AGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRM 527
AG LQ +L V GV L E A DLAVAA+I SSF + IGE+GL GE+R
Sbjct: 346 AGFLLQHQDAYLKVAGGVKLDEPAIDLAVAASIASSFRDQTSDPFDCIIGEVGLTGEIRR 405
Query: 528 VSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
VSR+E+RV AKLG+++ I+P A +E +G KN+ E + +
Sbjct: 406 VSRIEQRVQEAAKLGFKRVIIP--ANNIGGWKAPSGIEIVGVKNINEALKQIL 456
>gi|163119184|ref|YP_077373.2| DNA repair protein RadA [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|319649144|ref|ZP_08003352.1| DNA repair protein radA [Bacillus sp. BT1B_CT2]
gi|404487451|ref|YP_006711557.1| DNA repair protein RadA [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|423680480|ref|ZP_17655319.1| DNA repair protein RadA [Bacillus licheniformis WX-02]
gi|52346445|gb|AAU39079.1| DNA repair protein RadA [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|145902687|gb|AAU21735.2| DNA repair protein RadA [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|317388844|gb|EFV69663.1| DNA repair protein radA [Bacillus sp. BT1B_CT2]
gi|383441586|gb|EID49295.1| DNA repair protein RadA [Bacillus licheniformis WX-02]
Length = 459
Score = 361 bits (927), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 202/468 (43%), Positives = 287/468 (61%), Gaps = 22/468 (4%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVV-QRTWLPQKPEEVQPV 170
+T ++C CGY +W G C C + TM E+ + P +RT + VQ
Sbjct: 4 TKTKFICHSCGYESAKWMGKCPGCGAWNTM----VEETIKKPAANRRTAFSHSVQTVQKP 59
Query: 171 RLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAI 230
L + ++ + L E RVLG G+V GSLVLIGGDPG+GKSTLLLQ++A
Sbjct: 60 SPLTSIETTEEPRIKTKL-----GEFNRVLGNGIVKGSLVLIGGDPGIGKSTLLLQVSAQ 114
Query: 231 IADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPR 290
+AD + V+Y+SGEESV+Q RADR+ I + L + S TD+E I ++ ++P
Sbjct: 115 LADSKE-----NVLYISGEESVKQTKLRADRLGINSPTLHVLSETDMEYITSSIEEMNPS 169
Query: 291 ALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRV 350
+++DSIQTVY + + G + QV+ECT+ L+R AK IP+ + GHVTK G IAGPR+
Sbjct: 170 FVVVDSIQTVYQSDITSAPGSVSQVRECTAELMRIAKTKGIPIFIVGHVTKEGSIAGPRL 229
Query: 351 LEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQH 410
LEH+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM + GL V NPS+IFL E+
Sbjct: 230 LEHMVDTVLYFEGERHHTFRILRAVKNRFGSTNEMGIFEMREEGLTEVLNPSEIFLEERS 289
Query: 411 SDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVLMKQA 468
+ + AG +V M+G+R L+EIQAL S R GI +R ++++VL K+
Sbjct: 290 AGA---AGSSVVASMEGTRPVLVEIQALISPTSFGNPRRMATGIDHNRVSLLMAVLEKRV 346
Query: 469 GLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMV 528
GL LQ +L V GV L E A DLAVA +I SSF + P FIGE+GL GE+R V
Sbjct: 347 GLLLQNQDAYLKVAGGVKLDEPAIDLAVAVSIASSFRDTPPHPTDCFIGEVGLTGEVRRV 406
Query: 529 SRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVI 576
SR+E+RV AKLG+++ I+P + + + +E +G +N+ E +
Sbjct: 407 SRIEQRVQEAAKLGFKRMIIPSANVEGWTKP--KGIEVVGVENVAEAL 452
>gi|295396828|ref|ZP_06806960.1| DNA repair protein RadA [Aerococcus viridans ATCC 11563]
gi|294974950|gb|EFG50645.1| DNA repair protein RadA [Aerococcus viridans ATCC 11563]
Length = 460
Score = 361 bits (927), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 203/480 (42%), Positives = 290/480 (60%), Gaps = 33/480 (6%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTM-------KRYSAGESDEGPVVQRTWLPQ 162
K T +VC CGY Q++G C C + M K + E+ G Q
Sbjct: 3 KKTTTRYVCQACGYESVQFYGKCPNCGAWNQMEEERLYGKTIAHPETHAG---QANSSRM 59
Query: 163 KPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKST 222
KP+++ V+ E + QL E+ RVLGGG+V GSLVLIGGDPG+GKST
Sbjct: 60 KPQKLAAVQGEETPRIQTQL-----------GELNRVLGGGVVQGSLVLIGGDPGIGKST 108
Query: 223 LLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVE 282
L+LQ++A ++H PV+YVSGEES+ QI RADR+ + ++Y+ TD+ I +
Sbjct: 109 LMLQVSA---ELHQ--SAGPVLYVSGEESMHQIKLRADRLGFEGADFYVYAETDMAAIQD 163
Query: 283 KVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKS 342
+ L PR ++IDSIQT+ +AG + QV++ T+ L++ AK NI + + GHVTK
Sbjct: 164 AIYDLQPRFVVIDSIQTMTHEDATSTAGSVGQVRQTTAELMKLAKSQNIGIFIVGHVTKE 223
Query: 343 GDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPS 402
G+IAGPR+LEH+VD VLY EGEK ++R+LR+VKNRFGST+E+GVF+M Q GL V+NPS
Sbjct: 224 GNIAGPRILEHMVDTVLYFEGEKHDTFRILRAVKNRFGSTNEIGVFDMQQDGLHEVANPS 283
Query: 403 KIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMI 460
++FL E+ + + G AV M+G+R L EIQAL S R +G+ SR +I
Sbjct: 284 ELFLEERLAGTN---GSAVVASMEGTRPILTEIQALLTPTSFGNARRTASGLDYSRVSLI 340
Query: 461 ISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIG 520
++VL K+AGL LQ +L GV L E A DLA+A A+ SS+ E F+GEIG
Sbjct: 341 MAVLEKRAGLMLQNQDAYLKSTGGVRLDEPAIDLAIAVAVASSYREKETKPTDCFVGEIG 400
Query: 521 LGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
L GE+R V+R+ +RV KLG+ + +PK+A L G ++++ +G ++EV+N +F
Sbjct: 401 LTGEIRRVTRIAERVQEAEKLGFERIFIPKNALSGLT--GKQKIQVVGVTTVREVLNTIF 458
>gi|431796408|ref|YP_007223312.1| DNA repair protein RadA [Echinicola vietnamensis DSM 17526]
gi|430787173|gb|AGA77302.1| DNA repair protein RadA [Echinicola vietnamensis DSM 17526]
Length = 458
Score = 361 bits (926), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 196/470 (41%), Positives = 289/470 (61%), Gaps = 19/470 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T + C +CG +W G C AC T + + G + + P +L
Sbjct: 5 KTAYFCQNCGAQSPKWVGKCPACGEWNTYVEEVIHKEETGRGSWKQGSEKNTRHNSPRKL 64
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
E+N P E+ RVLGGG+VPGSL LIGG+PG+GKSTL+LQ+A ++
Sbjct: 65 QEINYEEH------PRLVTADAELDRVLGGGIVPGSLTLIGGEPGIGKSTLMLQIALVL- 117
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+ V+YVSGEES QI RADRM +E F+ S T+ + I ++++ L P L
Sbjct: 118 ------HQTKVLYVSGEESESQIKMRADRMQYHSENCFVLSETNTQVIFQQIEALKPDVL 171
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
+IDSIQT++ + V +AG + QV+ECT+ L++FAK+T PV L GH+TK G IAGP++LE
Sbjct: 172 VIDSIQTLHSKHVESAAGSVSQVRECTAELMKFAKETGTPVFLIGHITKDGSIAGPKILE 231
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VL EG++ SYR+LR+ KNRFGST+ELG++EM GL+ V+NPS+I LS++
Sbjct: 232 HMVDTVLQFEGDRHLSYRILRTSKNRFGSTNELGIYEMRADGLRGVANPSEILLSQR--- 288
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMKQAGL 470
E L G+A+ +++G+R LIEIQ+L + T R G A R +M+++VL K+ G+
Sbjct: 289 EEVLNGVAIGAMLEGNRPLLIEIQSLISPATYGTPQRSSTGHDAKRLNMLLAVLEKRGGM 348
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
+L + +FLNV G+ + + DLAV AA+ SS+ + P+ + F GE+GLGGE+R V+R
Sbjct: 349 RLGQQDVFLNVAGGMRVDDPGLDLAVCAALLSSYEDTPVSPDLCFAGEVGLGGEIRAVNR 408
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+E R++ KLG++K IV K A K + F +E I L+E+ +F
Sbjct: 409 IENRIAEADKLGFKKIIVSKYAVKGVDLSTF-NIEVIPVTKLEEMYQRLF 457
>gi|340356807|ref|ZP_08679448.1| DNA repair protein RadA [Sporosarcina newyorkensis 2681]
gi|339620145|gb|EGQ24716.1| DNA repair protein RadA [Sporosarcina newyorkensis 2681]
Length = 456
Score = 361 bits (926), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 196/449 (43%), Positives = 284/449 (63%), Gaps = 33/449 (7%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRAC-------ESVGTMKRYSAGESDEGPVVQRTWLPQKP 164
++ ++C CGY +W G C C E V +++ G V++ LP
Sbjct: 4 RKSKFMCRSCGYESPKWMGRCPGCGEWNTMDEEVEIVQKGPRAAFQHGEKVKQKALP--- 60
Query: 165 EEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLL 224
+ V ++E + +L NE+ RVLGGG+VPGSLVLIGGDPG+GKSTLL
Sbjct: 61 --ISAVEMVEEPRVKTEL-----------NELNRVLGGGIVPGSLVLIGGDPGIGKSTLL 107
Query: 225 LQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKV 284
LQ+++++A+ + V+Y+SGEES+ Q RA+R+ + ++EL++Y+ TD+ I E V
Sbjct: 108 LQVSSLLAN-----QQQRVLYISGEESIRQTKLRAERLGVKSDELYIYAETDLGMIHETV 162
Query: 285 QPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGD 344
+ P+ L++DSIQTV+ V + G + QV+ECT+ L+R AK NI + + GHVTK G
Sbjct: 163 DEVKPKFLVVDSIQTVHHPEVTSAPGSVSQVRECTAELMRIAKTQNIAIFIVGHVTKEGQ 222
Query: 345 IAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKI 404
IAGPR+LEH+VDAVLY EGE+ +YR+LRSVKNRFGST+E+ +FEM Q GL+ V NPS++
Sbjct: 223 IAGPRLLEHMVDAVLYFEGERHHTYRILRSVKNRFGSTNEIAIFEMLQSGLKEVLNPSEL 282
Query: 405 FLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIIS 462
FL E+ S+ AG + M+G+R L+EIQAL S R G+ +R ++++
Sbjct: 283 FLRER---SQGGAGSTIVASMEGTRPILVEIQALITPSSFNYPKRMATGLDQNRVSLLMA 339
Query: 463 VLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLG 522
VL K+AG+ LQ ++ V GV L E A DLAV +I SS+ + + G FIGE+GL
Sbjct: 340 VLEKRAGMLLQTQDAYIKVAGGVKLDEPAIDLAVLLSIVSSYRDTAVGVGDCFIGEVGLT 399
Query: 523 GELRMVSRMEKRVSTVAKLGYRKCIVPKS 551
GE+R VSR+E+RV+ AKLG+ + I+P S
Sbjct: 400 GEVRRVSRIEQRVTEAAKLGFERIIMPSS 428
>gi|424713098|ref|YP_007013813.1| DNA repair protein RadA homolog [Listeria monocytogenes serotype 4b
str. LL195]
gi|424012282|emb|CCO62822.1| DNA repair protein RadA homolog [Listeria monocytogenes serotype 4b
str. LL195]
Length = 457
Score = 361 bits (926), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 192/448 (42%), Positives = 277/448 (61%), Gaps = 22/448 (4%)
Query: 109 GKANRTN-WVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEV 167
KA RT +VC CGY +W G C C M T P K +
Sbjct: 2 AKAKRTTKFVCQACGYESAKWMGKCPNCNEWNQMVEALEPSKKSRSAFNHTGEPSKATPI 61
Query: 168 QPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQM 227
+ ++ K+++ +P E+ RVLGGG+VPGS+VL+GGDPG+GKSTLLLQ+
Sbjct: 62 TQI----ASETEKRVETNMP-------ELNRVLGGGVVPGSMVLVGGDPGIGKSTLLLQV 110
Query: 228 AAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPL 287
+A + + V+Y+SGEES++Q RA+R+ ++ + L++Y+ T++E + E + +
Sbjct: 111 SAQLTLTN-----KKVLYISGEESIKQTKLRAERLQVSGDNLYVYAETNLEAVQETIDFV 165
Query: 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAG 347
P ++IDSIQTVY V +AG + QV+ECT+ L+R AK NI + + GHVTK G IAG
Sbjct: 166 KPDFVVIDSIQTVYHPDVTSAAGSVSQVRECTATLMRIAKMQNIAIFIVGHVTKEGAIAG 225
Query: 348 PRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLS 407
PR+LEH+VD VLY EGE+ +YR+LR+VKNRFGST+E+G+FEM +GL V+NPS++FL
Sbjct: 226 PRLLEHMVDTVLYFEGERHHAYRILRAVKNRFGSTNEMGIFEMRDVGLVEVANPSEVFLE 285
Query: 408 EQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLM 465
E+ E +G V M+G+RS L+EIQAL R GI ++ +I++VL
Sbjct: 286 ERL---EGASGSTVVASMEGTRSVLVEIQALVSPTMFGNAKRMATGIDYNKVSLIMAVLE 342
Query: 466 KQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGEL 525
K+ GL LQ +L GV L E A DLAVA ++ SS+ + P + FIGE+GL GE+
Sbjct: 343 KRVGLMLQNQDAYLKAAGGVKLDEPAVDLAVAVSVASSYRDKPTRSTDCFIGELGLTGEI 402
Query: 526 RMVSRMEKRVSTVAKLGYRKCIVPKSAE 553
R V+R+E+RV AKLG+++ +PK+ E
Sbjct: 403 RRVARIEQRVQEAAKLGFKRIFIPKNNE 430
>gi|311070734|ref|YP_003975657.1| DNA repair protein RadA [Bacillus atrophaeus 1942]
gi|310871251|gb|ADP34726.1| DNA repair protein RadA [Bacillus atrophaeus 1942]
Length = 459
Score = 361 bits (926), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 194/445 (43%), Positives = 273/445 (61%), Gaps = 24/445 (5%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGES---DEGPVVQRTWLPQKPEEVQ 168
++T ++C CGY +W G C C + TM + ++ T +KP +
Sbjct: 4 SKTKFICQSCGYESAKWMGKCPGCGAWNTMTEETVKKTPANRRAAFAHSTQTVKKPSPIT 63
Query: 169 PVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMA 228
+ E + QL E RVLGGG+V GSLVLIGGDPG+GKSTLLLQ++
Sbjct: 64 SIETSEEPRIKTQL-----------GEFNRVLGGGVVKGSLVLIGGDPGIGKSTLLLQVS 112
Query: 229 AIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLS 288
A ++D V+Y+SGEESV+Q RADR+ I + L + + TD+E I +Q ++
Sbjct: 113 AQLSD-----STHSVLYISGEESVKQTKLRADRLDINNQTLHVLAETDMEYISSAIQEMN 167
Query: 289 PRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGP 348
P +++DSIQTVY + + G + QV+ECT+ L+R AK IP+ + GHVTK G IAGP
Sbjct: 168 PAFVVVDSIQTVYQSDITSAPGSVSQVRECTAELMRIAKTKGIPIFIVGHVTKEGSIAGP 227
Query: 349 RVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSE 408
R+LEH+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM + GL V NPS+IFL E
Sbjct: 228 RLLEHMVDTVLYFEGERHHTFRILRAVKNRFGSTNEMGIFEMREEGLTEVLNPSEIFLEE 287
Query: 409 QHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVLMK 466
+ + + AG ++ M+G+R L+EIQAL S R GI +R ++++VL K
Sbjct: 288 RSAGA---AGSSIVASMEGTRPILVEIQALISPTSFGNPRRMATGIDHNRVSLLMAVLEK 344
Query: 467 QAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELR 526
+ GL LQ +L V GV L E A DLAVA +I SSF + P IGE+GL GE+R
Sbjct: 345 RVGLLLQNQDAYLKVAGGVKLDEPAIDLAVAVSIASSFRDTPPNPADCIIGEVGLTGEVR 404
Query: 527 MVSRMEKRVSTVAKLGYRKCIVPKS 551
VSR+E+RV AKLG+++ I+P +
Sbjct: 405 RVSRIEQRVKEAAKLGFKRMIIPAA 429
>gi|419823201|ref|ZP_14346761.1| DNA repair protein RadA [Bacillus atrophaeus C89]
gi|388472732|gb|EIM09495.1| DNA repair protein RadA [Bacillus atrophaeus C89]
Length = 459
Score = 361 bits (926), Expect = 7e-97, Method: Compositional matrix adjust.
Identities = 194/445 (43%), Positives = 273/445 (61%), Gaps = 24/445 (5%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGES---DEGPVVQRTWLPQKPEEVQ 168
++T ++C CGY +W G C C + TM + ++ T +KP +
Sbjct: 4 SKTKFICQSCGYESAKWMGKCPGCGAWNTMTEETVKKTPANRRAAFAHSTQTVKKPSPIT 63
Query: 169 PVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMA 228
+ E + QL E RVLGGG+V GSLVLIGGDPG+GKSTLLLQ++
Sbjct: 64 SIETSEEPRIKTQL-----------GEFNRVLGGGVVKGSLVLIGGDPGIGKSTLLLQVS 112
Query: 229 AIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLS 288
A ++D V+Y+SGEESV+Q RADR+ I + L + + TD+E I +Q ++
Sbjct: 113 AQLSD-----STHSVLYISGEESVKQTKLRADRLDINNQSLHVLAETDMEYISSAIQEMN 167
Query: 289 PRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGP 348
P +++DSIQTVY + + G + QV+ECT+ L+R AK IP+ + GHVTK G IAGP
Sbjct: 168 PAFVVVDSIQTVYQSDITSAPGSVSQVRECTAELMRIAKTKGIPIFIVGHVTKEGSIAGP 227
Query: 349 RVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSE 408
R+LEH+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM + GL V NPS+IFL E
Sbjct: 228 RLLEHMVDTVLYFEGERHHTFRILRAVKNRFGSTNEMGIFEMREEGLTEVLNPSEIFLEE 287
Query: 409 QHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVLMK 466
+ + + AG ++ M+G+R L+EIQAL S R GI +R ++++VL K
Sbjct: 288 RSAGA---AGSSIVASMEGTRPILVEIQALISPTSFGNPRRMATGIDHNRVSLLMAVLEK 344
Query: 467 QAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELR 526
+ GL LQ +L V GV L E A DLAVA +I SSF + P IGE+GL GE+R
Sbjct: 345 RVGLLLQNQDAYLKVAGGVKLDEPAIDLAVAVSIASSFRDTPPNPADCIIGEVGLTGEVR 404
Query: 527 MVSRMEKRVSTVAKLGYRKCIVPKS 551
VSR+E+RV AKLG+++ I+P +
Sbjct: 405 RVSRIEQRVKEAAKLGFKRMIIPAA 429
>gi|311744980|ref|ZP_07718765.1| DNA repair protein RadA [Algoriphagus sp. PR1]
gi|126577487|gb|EAZ81707.1| DNA repair protein RadA [Algoriphagus sp. PR1]
Length = 457
Score = 361 bits (926), Expect = 7e-97, Method: Compositional matrix adjust.
Identities = 197/470 (41%), Positives = 291/470 (61%), Gaps = 19/470 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T + C +CG +W G C AC T + + G +T + + P ++
Sbjct: 5 KTTFFCQNCGAQSPKWIGKCPACGEWNTYVEEVIQKEESGKGSWKTSGSTQKKANTPKKI 64
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
EVN +P E+ RVLGGG+VPGSLVLIGG+PG+GKSTL+LQ+A +
Sbjct: 65 QEVNY------EEMPRYVTGDAELDRVLGGGIVPGSLVLIGGEPGIGKSTLMLQIALTL- 117
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+ V+YVSGEES QI RADRM + ++ S T+ + I ++++ L P L
Sbjct: 118 ------KAKSVLYVSGEESEAQIKMRADRMQAKNPDCYVLSETNTQHIFQQIEALKPNLL 171
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
+IDSIQT++ + V +AG + QV+ECT+ L++FAK+T PV L GH+TK G IAGP+VLE
Sbjct: 172 VIDSIQTLHSQLVESAAGSVSQVRECTAELMKFAKETGTPVFLIGHITKDGSIAGPKVLE 231
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VL EG++ SYR+LR+ KNRFGST ELG++EM GL+ V NPS+I L+++
Sbjct: 232 HMVDTVLQFEGDRHMSYRILRTSKNRFGSTHELGIYEMRVEGLRPVVNPSEILLTQRE-- 289
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMKQAGL 470
E L G+A+ +M+G+R LIEIQ+L + T R G A R +M+++VL K+ G+
Sbjct: 290 -EVLNGVAIGAMMEGNRPLLIEIQSLVSPATYGTPQRSSTGHDAKRLNMLLAVLEKRGGM 348
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
+L + +FLNV G+ + + A DLAV A++ SS+ + P+ I F GE+GLGGE+R V R
Sbjct: 349 RLGQQDVFLNVAGGLRVDDPALDLAVCASLISSYEDTPVSEQICFAGEVGLGGEIRAVQR 408
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+E R++ KLG++K IV K A K L + ++E + L+E+ + +F
Sbjct: 409 IENRIAEAEKLGFKKIIVSKYAIKGLDLKKY-RIEVMAVGKLEEMYSKIF 457
>gi|315274645|ref|ZP_07869488.1| DNA repair protein RadA [Listeria marthii FSL S4-120]
gi|313615726|gb|EFR89011.1| DNA repair protein RadA [Listeria marthii FSL S4-120]
Length = 457
Score = 361 bits (926), Expect = 8e-97, Method: Compositional matrix adjust.
Identities = 195/455 (42%), Positives = 284/455 (62%), Gaps = 36/455 (7%)
Query: 109 GKANRTN-WVCSDCGYTDGQWWGMCRAC-------ESVGTMKRYSAGESDEGPVVQRTWL 160
KA RT +VC CGY +W G C C E++ K+ + + G + T +
Sbjct: 2 AKAKRTTKFVCQACGYESAKWMGKCPNCNEWNQMVEALEPSKKSRSAFNHTGEPSKATPI 61
Query: 161 PQKPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGK 220
Q EV+ K+++ +P E+ RVLGGG+VPGS+VL+GGDPG+GK
Sbjct: 62 TQIASEVE-----------KRVETNMP-------ELNRVLGGGVVPGSMVLVGGDPGIGK 103
Query: 221 STLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDI 280
STLLLQ++A + + V+Y+SGEES++Q RA+R+ ++ + L++Y+ T++E +
Sbjct: 104 STLLLQVSAQLTLTN-----KKVLYISGEESIKQTKLRAERLQVSGDNLYVYAETNLEAV 158
Query: 281 VEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVT 340
E + + P ++IDSIQTVY V +AG + QV+ECT+AL+R AK NI + + GHVT
Sbjct: 159 QETIDFVKPDFVVIDSIQTVYHPDVTSAAGSVSQVRECTAALMRIAKMQNIAIFIVGHVT 218
Query: 341 KSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSN 400
K G IAGPR+LEH+VD VLY EGE+ +YR+LR+VKNRFGST+E+G+FEM +GL V+N
Sbjct: 219 KEGAIAGPRLLEHMVDTVLYFEGERHHAYRILRAVKNRFGSTNEMGIFEMRDVGLVEVAN 278
Query: 401 PSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRAD 458
PS++FL E+ E +G V M+G+R L+EIQAL R GI ++
Sbjct: 279 PSEVFLEERL---EGASGSTVVASMEGTRPVLVEIQALVSPTMFGNAKRMATGIDYNKVS 335
Query: 459 MIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGE 518
+I++VL K+ GL LQ +L GV L E A DLAVA ++ SS+ + P + FIGE
Sbjct: 336 LIMAVLEKRVGLMLQNQDAYLKAAGGVKLDEPAVDLAVAVSVASSYRDKPTKSTDCFIGE 395
Query: 519 IGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAE 553
+GL GE+R V+R+E+RV AKLG+++ +PK+ E
Sbjct: 396 LGLTGEIRRVARIEQRVQEAAKLGFKRIFIPKNNE 430
>gi|363582714|ref|ZP_09315524.1| DNA repair protein RadA [Flavobacteriaceae bacterium HQM9]
Length = 454
Score = 360 bits (925), Expect = 8e-97, Method: Compositional matrix adjust.
Identities = 194/471 (41%), Positives = 292/471 (61%), Gaps = 23/471 (4%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVR 171
+T + C CG +W G C +C++ ++ + ++ +++ PQK +P++
Sbjct: 4 TKTTFYCQSCGTQYAKWQGQCNSCKAWNSIAEEIIEKQEKVAWKEQSATPQK-RVSKPLK 62
Query: 172 LLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAII 231
+ E++ D R E RVLGGGLVPGSL L+GG+PG+GKSTLLLQ+A
Sbjct: 63 VSEIDTTA---DIRFNTGD---GEFNRVLGGGLVPGSLTLLGGEPGIGKSTLLLQIA--- 113
Query: 232 ADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRA 291
L P +YVSGEES +QI RA+RM T+ F+ + T + I ++V P
Sbjct: 114 -----LKLPFTTLYVSGEESQKQIKMRAERMQAETDNCFILTETKTQHIFKQVSQTQPDV 168
Query: 292 LIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVL 351
L+IDSIQT++ + S G + Q++ECTS L++FAK+TN PVLL GH+TK G IAGP++L
Sbjct: 169 LVIDSIQTLHTDYIESSPGSISQIRECTSELIKFAKETNTPVLLIGHITKDGTIAGPKIL 228
Query: 352 EHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHS 411
EH+VD VL EG++ YR+LR+ KNRFGST ELG++EM GL+ V+NPS++ LS++
Sbjct: 229 EHMVDTVLQFEGDRNFVYRILRAHKNRFGSTAELGIYEMQSAGLREVANPSELLLSKKE- 287
Query: 412 DSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAG 469
E L+G A+A ++G R +IEIQAL + T R G A R +M+++VL K+AG
Sbjct: 288 --EALSGTAIASTIEGMRPLMIEIQALVSTAVYGTPQRSTTGFPAKRLNMLLAVLEKRAG 345
Query: 470 LKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVS 529
+L +FLN+ G+ + + A DLAV AAI SS + P+ GI F E+GL GE+R VS
Sbjct: 346 FRLGAKDVFLNITGGITVDDPAIDLAVVAAILSSNEDIPLDKGICFAAEVGLAGEIRPVS 405
Query: 530 RMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
R+++R+ KLG+ + ++ K ++ S+AT G +Q I +++V++ +F
Sbjct: 406 RVDQRIQEAEKLGFSQILISKYSKTSVATKGIQQ---IKVARIEDVVSYLF 453
>gi|229003096|ref|ZP_04160947.1| DNA repair protein radA [Bacillus mycoides Rock1-4]
gi|228758156|gb|EEM07350.1| DNA repair protein radA [Bacillus mycoides Rock1-4]
Length = 458
Score = 360 bits (925), Expect = 8e-97, Method: Compositional matrix adjust.
Identities = 207/475 (43%), Positives = 291/475 (61%), Gaps = 28/475 (5%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQ--KPEEVQP 169
+T ++C +CGY ++ G C C T+ E ++ +R + E +P
Sbjct: 4 KKTKFICQECGYQSPKYMGKCPGCGQWNTL----VEEMEQVVSSRRINYANAIQTEVTKP 59
Query: 170 VRLLEV-NKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMA 228
RL EV K +++ + E RVLGGG+V GSLVLIGGDPG+GKSTLLLQ++
Sbjct: 60 RRLTEVETKSEARIETKF-------QEFNRVLGGGIVDGSLVLIGGDPGIGKSTLLLQIS 112
Query: 229 AIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLS 288
+ +AD V+Y+SGEES +QI RADR+ + LF+ S TD++ I + ++
Sbjct: 113 SQLAD-----SSYDVLYISGEESAKQIKLRADRLHVNGSNLFVVSETDLQRIAAHIDEMN 167
Query: 289 PRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGP 348
P ++IDSIQT+YL V + G + QV+ECT+ L++ AK IP+ + GHVTK G IAGP
Sbjct: 168 PSFVVIDSIQTIYLPEVTSAPGSVSQVRECTAELMKLAKTKGIPIFIVGHVTKEGAIAGP 227
Query: 349 RVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSE 408
R+LEH+VDAVLY EG++ +YR+LR+VKNRFGST+E+G+FEM +LGL V NPS+IFL E
Sbjct: 228 RMLEHMVDAVLYFEGDRHHTYRILRAVKNRFGSTNEMGIFEMKELGLAEVLNPSEIFLEE 287
Query: 409 QHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVLMK 466
+ +AG V M+G+R L+EIQAL S R GI +R +I++VL K
Sbjct: 288 RPVG---VAGSTVVASMEGTRPVLVEIQALISPTSFGNPRRMATGIDHNRVSLIMAVLEK 344
Query: 467 QAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELR 526
+AGL LQ +L V G+ L E A DLAVA +I SSF + A IGE+GL GE+R
Sbjct: 345 RAGLLLQNQDAYLKVAGGLRLDEPAIDLAVALSIASSFRDKSTAPTDAVIGEVGLTGEVR 404
Query: 527 MVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGF-EQMEFIGCKNLKEVINVVF 580
VSR+E+RV AKLG+++ I+P +K+L E +E +G NL E + +
Sbjct: 405 RVSRIEQRVQEAAKLGFQRAIIP---QKNLGGWTIPEGIEVVGVSNLGEALRLTL 456
>gi|30018353|ref|NP_829984.1| DNA repair protein RadA [Bacillus cereus ATCC 14579]
gi|206972178|ref|ZP_03233125.1| DNA repair protein RadA [Bacillus cereus AH1134]
gi|218235539|ref|YP_002364932.1| DNA repair protein RadA [Bacillus cereus B4264]
gi|228919033|ref|ZP_04082412.1| DNA repair protein radA [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228950631|ref|ZP_04112765.1| DNA repair protein radA [Bacillus thuringiensis serovar kurstaki
str. T03a001]
gi|228956524|ref|ZP_04118320.1| DNA repair protein radA [Bacillus thuringiensis serovar pakistani
str. T13001]
gi|229067848|ref|ZP_04201165.1| DNA repair protein radA [Bacillus cereus F65185]
gi|229107769|ref|ZP_04237405.1| DNA repair protein radA [Bacillus cereus Rock1-15]
gi|229125600|ref|ZP_04254632.1| DNA repair protein radA [Bacillus cereus BDRD-Cer4]
gi|229142889|ref|ZP_04271330.1| DNA repair protein radA [Bacillus cereus BDRD-ST24]
gi|229148492|ref|ZP_04276748.1| DNA repair protein radA [Bacillus cereus m1550]
gi|229176683|ref|ZP_04304087.1| DNA repair protein radA [Bacillus cereus 172560W]
gi|229188368|ref|ZP_04315416.1| DNA repair protein radA [Bacillus cereus ATCC 10876]
gi|296500917|ref|YP_003662617.1| DNA repair protein RadA [Bacillus thuringiensis BMB171]
gi|365164057|ref|ZP_09360143.1| DNA repair protein RadA [Bacillus sp. 7_6_55CFAA_CT2]
gi|423416017|ref|ZP_17393137.1| DNA repair protein RadA [Bacillus cereus BAG3O-2]
gi|423422316|ref|ZP_17399347.1| DNA repair protein RadA [Bacillus cereus BAG3X2-2]
gi|423428189|ref|ZP_17405193.1| DNA repair protein RadA [Bacillus cereus BAG4O-1]
gi|423439462|ref|ZP_17416400.1| DNA repair protein RadA [Bacillus cereus BAG4X12-1]
gi|423507891|ref|ZP_17484458.1| DNA repair protein RadA [Bacillus cereus HD73]
gi|423578490|ref|ZP_17554601.1| DNA repair protein RadA [Bacillus cereus VD014]
gi|423590630|ref|ZP_17566692.1| DNA repair protein RadA [Bacillus cereus VD045]
gi|423631992|ref|ZP_17607738.1| DNA repair protein RadA [Bacillus cereus VD154]
gi|423638086|ref|ZP_17613738.1| DNA repair protein RadA [Bacillus cereus VD156]
gi|423645098|ref|ZP_17620714.1| DNA repair protein RadA [Bacillus cereus VD166]
gi|423646218|ref|ZP_17621788.1| DNA repair protein RadA [Bacillus cereus VD169]
gi|423653017|ref|ZP_17628316.1| DNA repair protein RadA [Bacillus cereus VD200]
gi|449086749|ref|YP_007419190.1| DNA repair protein RadA [Bacillus thuringiensis serovar kurstaki
str. HD73]
gi|29893893|gb|AAP07185.1| DNA repair protein RadA [Bacillus cereus ATCC 14579]
gi|206732752|gb|EDZ49927.1| DNA repair protein RadA [Bacillus cereus AH1134]
gi|218163496|gb|ACK63488.1| DNA repair protein RadA [Bacillus cereus B4264]
gi|228595042|gb|EEK52813.1| DNA repair protein radA [Bacillus cereus ATCC 10876]
gi|228606726|gb|EEK64143.1| DNA repair protein radA [Bacillus cereus 172560W]
gi|228634908|gb|EEK91481.1| DNA repair protein radA [Bacillus cereus m1550]
gi|228640510|gb|EEK96899.1| DNA repair protein radA [Bacillus cereus BDRD-ST24]
gi|228657792|gb|EEL13598.1| DNA repair protein radA [Bacillus cereus BDRD-Cer4]
gi|228675618|gb|EEL30826.1| DNA repair protein radA [Bacillus cereus Rock1-15]
gi|228715207|gb|EEL67066.1| DNA repair protein radA [Bacillus cereus F65185]
gi|228803089|gb|EEM49911.1| DNA repair protein radA [Bacillus thuringiensis serovar pakistani
str. T13001]
gi|228808982|gb|EEM55467.1| DNA repair protein radA [Bacillus thuringiensis serovar kurstaki
str. T03a001]
gi|228840558|gb|EEM85820.1| DNA repair protein radA [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|296321969|gb|ADH04897.1| DNA repair protein RadA [Bacillus thuringiensis BMB171]
gi|363613358|gb|EHL64875.1| DNA repair protein RadA [Bacillus sp. 7_6_55CFAA_CT2]
gi|401094464|gb|EJQ02545.1| DNA repair protein RadA [Bacillus cereus BAG3O-2]
gi|401112816|gb|EJQ20690.1| DNA repair protein RadA [Bacillus cereus BAG4X12-1]
gi|401120033|gb|EJQ27834.1| DNA repair protein RadA [Bacillus cereus BAG3X2-2]
gi|401127111|gb|EJQ34840.1| DNA repair protein RadA [Bacillus cereus BAG4O-1]
gi|401220267|gb|EJR26909.1| DNA repair protein RadA [Bacillus cereus VD045]
gi|401221215|gb|EJR27839.1| DNA repair protein RadA [Bacillus cereus VD014]
gi|401262711|gb|EJR68849.1| DNA repair protein RadA [Bacillus cereus VD154]
gi|401267793|gb|EJR73849.1| DNA repair protein RadA [Bacillus cereus VD166]
gi|401271810|gb|EJR77813.1| DNA repair protein RadA [Bacillus cereus VD156]
gi|401287847|gb|EJR93614.1| DNA repair protein RadA [Bacillus cereus VD169]
gi|401303125|gb|EJS08688.1| DNA repair protein RadA [Bacillus cereus VD200]
gi|402442678|gb|EJV74599.1| DNA repair protein RadA [Bacillus cereus HD73]
gi|449020506|gb|AGE75669.1| DNA repair protein RadA [Bacillus thuringiensis serovar kurstaki
str. HD73]
Length = 458
Score = 360 bits (925), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 207/478 (43%), Positives = 294/478 (61%), Gaps = 34/478 (7%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQ----KPEEV 167
+T + C +CGY ++ G C C ++++ + PVV L + E
Sbjct: 4 KKTKFTCQECGYQSPKYMGKCPGC------GQWNSLVEEMEPVVSSRRLNYANAIQTEVT 57
Query: 168 QPVRLLEV-NKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQ 226
+P RL EV K +++ + E RVLGGG+V GSLVLIGGDPG+GKSTLLLQ
Sbjct: 58 KPRRLTEVETKSEARIETKF-------QEFNRVLGGGIVDGSLVLIGGDPGIGKSTLLLQ 110
Query: 227 MAAIIADV-HDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQ 285
+++ +AD +D V+Y+SGEES +QI RADR+ + LF+ S TD++ I ++
Sbjct: 111 ISSQLADASYD------VLYISGEESAKQIKLRADRLHVNGSNLFVVSETDLQRIAAHIE 164
Query: 286 PLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDI 345
++P ++IDSIQT++L V + G + QV+ECT+ L++ AK IP+ + GHVTK G I
Sbjct: 165 EMNPAFVVIDSIQTIHLPEVTSAPGSVAQVRECTAELMKLAKTKGIPIFIVGHVTKEGAI 224
Query: 346 AGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIF 405
AGPR+LEH+VDAVLY EG++ +YR+LR+VKNRFGST+E+G+FEM +LGL V NPS+IF
Sbjct: 225 AGPRMLEHMVDAVLYFEGDRHHTYRILRAVKNRFGSTNEMGIFEMKELGLAEVLNPSEIF 284
Query: 406 LSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISV 463
L E+ +AG V M+G+R L+EIQAL S R GI +R +I++V
Sbjct: 285 LEERPVG---VAGSTVVASMEGTRPVLVEIQALISPTSFGNPRRMATGIDHNRVSLIMAV 341
Query: 464 LMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGG 523
L K+ GL LQ +L V G+ L E A DLAVA +I SSF + A IGE+GL G
Sbjct: 342 LEKRTGLLLQNQDAYLKVAGGLKLDEPAIDLAVALSIASSFRDKSTAPTDAVIGEVGLTG 401
Query: 524 ELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGF-EQMEFIGCKNLKEVINVVF 580
E+R VSR+E+RV AKLG+++ I+P+ K+L E +E +G NL E + +
Sbjct: 402 EIRRVSRIEQRVQEAAKLGFQRAIIPR---KNLGGWTIPEGIEVVGVSNLGEALRLTL 456
>gi|301051820|ref|YP_003790031.1| DNA repair protein [Bacillus cereus biovar anthracis str. CI]
gi|300373989|gb|ADK02893.1| DNA repair protein [Bacillus cereus biovar anthracis str. CI]
Length = 458
Score = 360 bits (924), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 206/477 (43%), Positives = 291/477 (61%), Gaps = 32/477 (6%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQ----KPEEV 167
+T + C +CGY ++ G C C T+ + PVV L + E +
Sbjct: 4 KKTKFTCQECGYQSPKYMGKCPGCGQWNTLV------EEMEPVVSSRRLNYANAIQTEVI 57
Query: 168 QPVRLLEV-NKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQ 226
+P RL EV K +++ + E RVLGGG+V GSLVLIGGDPG+GKSTLLLQ
Sbjct: 58 KPRRLTEVETKSEARIETKF-------QEFNRVLGGGIVDGSLVLIGGDPGIGKSTLLLQ 110
Query: 227 MAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQP 286
+++ +AD V+Y+SGEES +QI RADR+ + LF+ S TD++ I ++
Sbjct: 111 ISSQLAD-----SSYDVLYISGEESAKQIKLRADRLHVNGSNLFVVSETDLQRIATHIEE 165
Query: 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIA 346
++P ++IDSIQT++L V + G + QV+ECT+ L++ AK IP+ + GHVTK G IA
Sbjct: 166 VNPAFVVIDSIQTIHLPEVTSAPGSVAQVRECTAELMKLAKTKGIPIFIVGHVTKEGAIA 225
Query: 347 GPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFL 406
GPR+LEH+VDAVLY EG++ +YR+LR+VKNRFGST+E+G+FEM +LGL V NPS+IFL
Sbjct: 226 GPRMLEHMVDAVLYFEGDRHHTYRILRAVKNRFGSTNEMGIFEMKELGLAEVLNPSEIFL 285
Query: 407 SEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVL 464
E+ +AG V M+G+R L+EIQAL S R GI +R +I++VL
Sbjct: 286 EERPVG---VAGSTVVASMEGTRPVLVEIQALISPTSFGNPRRMATGIDHNRVSLIMAVL 342
Query: 465 MKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGE 524
K+ GL LQ +L V G+ L E A DLAVA +I SSF + A IGE+GL GE
Sbjct: 343 EKRTGLLLQNQDAYLKVAGGLKLDEPAIDLAVALSIASSFRDKSTAPTDAVIGEVGLTGE 402
Query: 525 LRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGF-EQMEFIGCKNLKEVINVVF 580
+R VSR+E+RV AKLG+++ I+P+ K+L + +E +G NL E + +
Sbjct: 403 IRRVSRIEQRVQEAAKLGFQRAIIPR---KNLGGWTIPDGIEVVGVSNLGEALRLTL 456
>gi|307108248|gb|EFN56488.1| hypothetical protein CHLNCDRAFT_8491, partial [Chlorella
variabilis]
Length = 426
Score = 360 bits (924), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 203/437 (46%), Positives = 285/437 (65%), Gaps = 28/437 (6%)
Query: 116 WVCSDCGYTDGQWWGMCRACESVGTMKRY---SAGESDEGPVVQRTWLPQKPEEVQPVRL 172
++C CG QW G C++C + ++++ +A +S P++ PQ RL
Sbjct: 7 YICGGCGEQSAQWAGQCKSCGAWNSLEKVVVQAAADSTPLPLLPPAAAPQ--------RL 58
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
+V++ + WR+ L G G E+ RVLGGG+VPGSL L+GG+PGVGKSTLLLQMAA++
Sbjct: 59 SDVSRRGFRSRWRLVLPGENGQELGRVLGGGVVPGSLTLVGGEPGVGKSTLLLQMAAMLT 118
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIA---TEELFLYSSTDIEDIVEKVQPLSP 289
G + V+YVSGEESVEQIG+RA+RM A +F+YS+T ++ I++++ L P
Sbjct: 119 QASTGG--ATVLYVSGEESVEQIGSRAERMGPAVGSNPSIFVYSATRLDAILDEIIRLQP 176
Query: 290 RALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPR 349
A+++DSIQTVYL V+ SAG + QV+EC +ALL+ AK+ IPV L GHVTKSGDIAGPR
Sbjct: 177 AAVVVDSIQTVYLDEVSSSAGSVTQVRECATALLQVAKRERIPVFLVGHVTKSGDIAGPR 236
Query: 350 VLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQ 409
VLEHIVD V+YMEG + RL+RS+KNR+G+TDE+GVFEM G+Q V NPS IFLS++
Sbjct: 237 VLEHIVDTVIYMEGGRQQPVRLVRSIKNRYGNTDEVGVFEMHDDGMQVVPNPSSIFLSDR 296
Query: 410 HSDSEFLAGLAVAVIMDGSRSFLIEIQALC-----VSGSTVSRHVNGIQASRADMIISVL 464
D AVAV+++G+R L+E+QALC SG R +G+ R ++++VL
Sbjct: 297 --DLAPNVSSAVAVVLEGTRPLLMEVQALCSPVPQSSGQPPMRMPSGVDRQRLALLLAVL 354
Query: 465 MKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGE 524
K ++ + LNV G+ + E + DLAVA AI SS+ E PI + +GLGGE
Sbjct: 355 GKHTDMRPYSVDVHLNVTGGLEMKEPSTDLAVACAIASSYFEQPIGRDV-----VGLGGE 409
Query: 525 LRMVSRMEKRVSTVAKL 541
LR V +E+R++ AK+
Sbjct: 410 LRPVGNIERRIAEAAKV 426
>gi|392958573|ref|ZP_10324082.1| DNA repair protein RadA [Bacillus macauensis ZFHKF-1]
gi|391875474|gb|EIT84085.1| DNA repair protein RadA [Bacillus macauensis ZFHKF-1]
Length = 458
Score = 360 bits (924), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 200/472 (42%), Positives = 290/472 (61%), Gaps = 28/472 (5%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRT---WLPQKPEEVQ 168
N++ ++C +CGY +W G C C TM + + + T QKP+ +
Sbjct: 4 NKSVFMCQECGYESPKWMGKCPGCHQWNTMVEEIIKKEVQTRGLSSTSALGTKQKPQSIV 63
Query: 169 PVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMA 228
++ + P E+ RVLGGG+VPGSLVL+GGDPG+GKSTLLLQ +
Sbjct: 64 SIK-----------SEQEPRINTHTGELNRVLGGGIVPGSLVLVGGDPGIGKSTLLLQTS 112
Query: 229 AIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLS 288
A +A V+Y+SGEESV+Q R+DR+ IA +EL++ + TD++ I + V+ ++
Sbjct: 113 AKLAQTGQ-----KVLYISGEESVKQTKLRSDRLHIAADELYVLAETDLDLIEKSVEEIA 167
Query: 289 PRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGP 348
P +IIDSIQTVY V + G + QV+ECTS +R AK + + + GHVTK G IAGP
Sbjct: 168 PTVVIIDSIQTVYRPEVTSAPGSVSQVRECTSHFMRIAKTKGVAIFIVGHVTKEGAIAGP 227
Query: 349 RVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSE 408
R+LEH+VDAVLY EGE+ +YR+LR+VKNRFGST+E+GVFEM ++GL V+NPS+IFL E
Sbjct: 228 RMLEHMVDAVLYFEGERHHTYRILRAVKNRFGSTNEIGVFEMKEIGLSEVTNPSEIFLEE 287
Query: 409 QHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVLMK 466
+ S+ +AG V ++G+R L+EIQAL S R GI +R ++++VL K
Sbjct: 288 R---SKGVAGSTVVASLEGTRPMLVEIQALISPTSFGNPRRMATGIDHNRVSLLMAVLEK 344
Query: 467 QAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELR 526
+ GL LQ ++NV GV L E A DLAVA +I SSF + IGE+GL GE+R
Sbjct: 345 RVGLLLQNQDAYINVAGGVRLDEPAVDLAVAVSIASSFKDSSTRPTDVMIGEVGLTGEVR 404
Query: 527 MVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQ-MEFIGCKNLKEVIN 577
VSR+++R+ AKLG+ + I+P +K++ + +E IG ++E ++
Sbjct: 405 RVSRIDQRIHEAAKLGFERAIIP---DKNIGGWTIPKGIEVIGVSTVEEALH 453
>gi|289433588|ref|YP_003463460.1| DNA repair protein [Listeria seeligeri serovar 1/2b str. SLCC3954]
gi|422417726|ref|ZP_16494681.1| DNA repair protein RadA [Listeria seeligeri FSL N1-067]
gi|422420830|ref|ZP_16497783.1| DNA repair protein RadA [Listeria seeligeri FSL S4-171]
gi|289169832|emb|CBH26370.1| DNA repair protein [Listeria seeligeri serovar 1/2b str. SLCC3954]
gi|313635084|gb|EFS01433.1| DNA repair protein RadA [Listeria seeligeri FSL N1-067]
gi|313639761|gb|EFS04510.1| DNA repair protein RadA [Listeria seeligeri FSL S4-171]
Length = 457
Score = 360 bits (923), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 194/455 (42%), Positives = 284/455 (62%), Gaps = 36/455 (7%)
Query: 109 GKANRTN-WVCSDCGYTDGQWWGMCRAC-------ESVGTMKRYSAGESDEGPVVQRTWL 160
KA RT +VC CGY +W G C C E++ K+ + + G V + T +
Sbjct: 2 AKAKRTTKFVCQACGYESPKWMGKCPNCNEWNQMVEALEPSKKSRSAFNHTGEVAKATPI 61
Query: 161 PQKPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGK 220
Q E + +++ R+P E+ RVLGGG+VPGS+VL+GGDPG+GK
Sbjct: 62 TQIASEEEA-----------RVETRMP-------ELNRVLGGGVVPGSMVLVGGDPGIGK 103
Query: 221 STLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDI 280
STLLLQ++A + + V+Y+SGEES++Q RA+R+ ++ + L++Y+ T++E +
Sbjct: 104 STLLLQVSAQLTLTN-----KKVLYISGEESIKQTKLRAERLQVSGDNLYVYAETNLEAV 158
Query: 281 VEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVT 340
E + + P ++IDSIQTVY V +AG + QV+ECT+AL+R AK NI + + GHVT
Sbjct: 159 QETIDFVKPDFVVIDSIQTVYHPDVTSAAGSVSQVRECTAALMRIAKMQNIAIFIVGHVT 218
Query: 341 KSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSN 400
K G IAGPR+LEH+VD VLY EGE+ +YR+LR+VKNRFGST+E+G+FEM +GL V+N
Sbjct: 219 KEGAIAGPRLLEHMVDTVLYFEGERHHAYRILRAVKNRFGSTNEIGIFEMRDVGLVEVAN 278
Query: 401 PSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRAD 458
PS++FL E+ E +G V M+G+R L+EIQAL R GI ++
Sbjct: 279 PSEVFLEERL---EGASGSTVVASMEGTRPVLVEIQALVSPTMFGNAKRMATGIDYNKVS 335
Query: 459 MIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGE 518
+I++VL K+ GL LQ +L GV L E A DLA+A ++ SS+ + P + FIGE
Sbjct: 336 LIMAVLEKRVGLMLQNQDAYLKAAGGVKLDEPAVDLAIAVSVASSYRDKPTKSTDCFIGE 395
Query: 519 IGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAE 553
+GL GE+R V+R+E+RV AKLG+++ +PK+ E
Sbjct: 396 LGLTGEIRRVARIEQRVQEAAKLGFKRIFIPKNNE 430
>gi|451348523|ref|YP_007447154.1| DNA repair protein RadA [Bacillus amyloliquefaciens IT-45]
gi|449852281|gb|AGF29273.1| DNA repair protein RadA [Bacillus amyloliquefaciens IT-45]
Length = 459
Score = 360 bits (923), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 200/473 (42%), Positives = 285/473 (60%), Gaps = 32/473 (6%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLP------QKPE 165
++T ++C CGY +W G C C + TM + + P +R QKP
Sbjct: 4 SKTKFICHSCGYESAKWMGKCPGCGAWNTMVEETI---KKAPANRRAAFSHSVQTVQKPS 60
Query: 166 EVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLL 225
+ + E + +L+ E RVLGGG+V GSLVLIGGDPG+GKSTLLL
Sbjct: 61 PITSIETSEEPRVQTKLE-----------EFNRVLGGGVVKGSLVLIGGDPGIGKSTLLL 109
Query: 226 QMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQ 285
Q++A +AD V+Y+SGEESV+Q RADR+ I ++ L + S TD+E I +Q
Sbjct: 110 QVSAQLADT-----AGSVLYISGEESVKQTKLRADRLGINSQMLHVLSETDMEYISSAIQ 164
Query: 286 PLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDI 345
+ P +++DSIQTVY + + G + QV+ECT+ L++ AK IP+ + GHVTK G I
Sbjct: 165 EMKPAFVVVDSIQTVYQSDITSAPGSVSQVRECTAELMKIAKTNGIPIFIVGHVTKEGSI 224
Query: 346 AGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIF 405
AGPR+LEH+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM + GL V NPS+IF
Sbjct: 225 AGPRLLEHMVDTVLYFEGERHHTFRILRAVKNRFGSTNEMGIFEMREEGLTEVLNPSEIF 284
Query: 406 LSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISV 463
L E+ + + +G ++ M+G+R L+EIQAL S R GI +R +I++V
Sbjct: 285 LEERSAGA---SGSSIVASMEGTRPILVEIQALISPTSFGNPRRMATGIDHNRVSLIMAV 341
Query: 464 LMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGG 523
L K+ GL LQ +L V GV L E A DLAVA +I SSF + P FIGE+GL G
Sbjct: 342 LEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAVAVSIASSFRDTPPNPADCFIGEVGLTG 401
Query: 524 ELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVI 576
E+R VSR+E+RV AKLG+++ I+ ++ + +E +G N+ E +
Sbjct: 402 EVRRVSRIEQRVKEAAKLGFKRMIISEANADGWTIP--KGIEVVGVANVAEAL 452
>gi|407797863|ref|ZP_11144778.1| DNA repair protein RadA [Salimicrobium sp. MJ3]
gi|407017626|gb|EKE30383.1| DNA repair protein RadA [Salimicrobium sp. MJ3]
Length = 456
Score = 360 bits (923), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 203/475 (42%), Positives = 295/475 (62%), Gaps = 29/475 (6%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSA--GESDEGPVVQRTWLPQKPEEVQP 169
+T +VC +CG +W G C AC T +A G++D + T+ K +P
Sbjct: 4 KKTIFVCQECGNESPKWMGKCPACGRWNTFVEETAITGKND-----RHTFQVDKDNRSKP 58
Query: 170 VRLLEVN-KGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMA 228
R+ + K +++ +P E RVLGGG+V GS+VLIGGDPG+GKSTLLLQ++
Sbjct: 59 ERITSIALKEESRIETAMP-------EFNRVLGGGIVGGSMVLIGGDPGIGKSTLLLQVS 111
Query: 229 AIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLS 288
+ +AD + PV+Y+SGEES +Q RADR+ + +++L++ + T++E IV ++ +
Sbjct: 112 SQLADKN-----LPVLYISGEESTKQTKLRADRLNVTSDQLYILAETNLEHIVAHIETVQ 166
Query: 289 PRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGP 348
P+ L++DSIQTVY V + G + QV+ECTS L+R AK IPV + GHVTK G IAGP
Sbjct: 167 PKFLVVDSIQTVYKEEVTSAPGSVSQVRECTSELMRIAKTKGIPVFIVGHVTKEGSIAGP 226
Query: 349 RVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSE 408
R+LEH+VDAVLY EGE+ +++R++RSVKNRFG T E+G+FEM + GL+ V NPS+IFL E
Sbjct: 227 RLLEHMVDAVLYFEGEQHNTFRIVRSVKNRFGGTHEMGIFEMKESGLEEVLNPSEIFLEE 286
Query: 409 QHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVLMK 466
+ S+ AG V M+G+R L+EIQAL + R G+ SR ++++VL K
Sbjct: 287 R---SKGTAGSTVVASMEGTRPVLVEIQALISPTAFGNPRRMATGLDHSRVPLLMAVLEK 343
Query: 467 QAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLE-FPIPNGIAFIGEIGLGGEL 525
+AGL LQ ++ V GV L E A DL VA +I SSF + P I IGE+GL GE+
Sbjct: 344 RAGLLLQNYDAYVKVAGGVKLDEPAIDLGVAVSIASSFRDQVPKATDI-LIGEVGLTGEI 402
Query: 526 RMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
R VSR+E+RV AKLG+ + ++P + + +E IG + +KE ++
Sbjct: 403 RRVSRIEQRVQEAAKLGFSRAVIPSRNLEGWTVP--DNIEVIGVETIKEAMDATL 455
>gi|30260273|ref|NP_842650.1| DNA repair protein RadA [Bacillus anthracis str. Ames]
gi|47525337|ref|YP_016686.1| DNA repair protein RadA [Bacillus anthracis str. 'Ames Ancestor']
gi|49183116|ref|YP_026368.1| DNA repair protein RadA [Bacillus anthracis str. Sterne]
gi|65317543|ref|ZP_00390502.1| COG1066: Predicted ATP-dependent serine protease [Bacillus
anthracis str. A2012]
gi|165873137|ref|ZP_02217753.1| DNA repair protein RadA [Bacillus anthracis str. A0488]
gi|167635099|ref|ZP_02393416.1| DNA repair protein RadA [Bacillus anthracis str. A0442]
gi|167641948|ref|ZP_02400183.1| DNA repair protein RadA [Bacillus anthracis str. A0193]
gi|170707576|ref|ZP_02898029.1| DNA repair protein RadA [Bacillus anthracis str. A0389]
gi|177655584|ref|ZP_02936965.1| DNA repair protein RadA [Bacillus anthracis str. A0174]
gi|190568960|ref|ZP_03021861.1| DNA repair protein RadA [Bacillus anthracis str. Tsiankovskii-I]
gi|196036379|ref|ZP_03103776.1| DNA repair protein RadA [Bacillus cereus W]
gi|227812756|ref|YP_002812765.1| DNA repair protein RadA [Bacillus anthracis str. CDC 684]
gi|228943889|ref|ZP_04106274.1| DNA repair protein radA [Bacillus thuringiensis serovar monterrey
BGSC 4AJ1]
gi|229119745|ref|ZP_04249006.1| DNA repair protein radA [Bacillus cereus 95/8201]
gi|229604919|ref|YP_002864734.1| DNA repair protein RadA [Bacillus anthracis str. A0248]
gi|254724223|ref|ZP_05186008.1| DNA repair protein RadA [Bacillus anthracis str. A1055]
gi|254733763|ref|ZP_05191478.1| DNA repair protein RadA [Bacillus anthracis str. Western North
America USA6153]
gi|254744614|ref|ZP_05202293.1| DNA repair protein RadA [Bacillus anthracis str. Kruger B]
gi|254756319|ref|ZP_05208348.1| DNA repair protein RadA [Bacillus anthracis str. Vollum]
gi|254758397|ref|ZP_05210424.1| DNA repair protein RadA [Bacillus anthracis str. Australia 94]
gi|421510408|ref|ZP_15957301.1| DNA repair protein RadA [Bacillus anthracis str. UR-1]
gi|421640497|ref|ZP_16081079.1| DNA repair protein RadA [Bacillus anthracis str. BF1]
gi|30253594|gb|AAP24136.1| DNA repair protein RadA [Bacillus anthracis str. Ames]
gi|47500485|gb|AAT29161.1| DNA repair protein RadA [Bacillus anthracis str. 'Ames Ancestor']
gi|49177043|gb|AAT52419.1| DNA repair protein RadA [Bacillus anthracis str. Sterne]
gi|164711117|gb|EDR16678.1| DNA repair protein RadA [Bacillus anthracis str. A0488]
gi|167510079|gb|EDR85490.1| DNA repair protein RadA [Bacillus anthracis str. A0193]
gi|167529573|gb|EDR92323.1| DNA repair protein RadA [Bacillus anthracis str. A0442]
gi|170127572|gb|EDS96446.1| DNA repair protein RadA [Bacillus anthracis str. A0389]
gi|172080048|gb|EDT65146.1| DNA repair protein RadA [Bacillus anthracis str. A0174]
gi|190559884|gb|EDV13868.1| DNA repair protein RadA [Bacillus anthracis str. Tsiankovskii-I]
gi|195991009|gb|EDX54980.1| DNA repair protein RadA [Bacillus cereus W]
gi|227002533|gb|ACP12276.1| DNA repair protein RadA [Bacillus anthracis str. CDC 684]
gi|228663646|gb|EEL19225.1| DNA repair protein radA [Bacillus cereus 95/8201]
gi|228815722|gb|EEM61958.1| DNA repair protein radA [Bacillus thuringiensis serovar monterrey
BGSC 4AJ1]
gi|229269327|gb|ACQ50964.1| DNA repair protein RadA [Bacillus anthracis str. A0248]
gi|401819490|gb|EJT18667.1| DNA repair protein RadA [Bacillus anthracis str. UR-1]
gi|403392313|gb|EJY89567.1| DNA repair protein RadA [Bacillus anthracis str. BF1]
Length = 458
Score = 360 bits (923), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 206/477 (43%), Positives = 290/477 (60%), Gaps = 32/477 (6%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQ----KPEEV 167
+T + C +CGY ++ G C C T+ + PVV L + E
Sbjct: 4 KKTKFTCQECGYQSPKYMGKCPGCGQWNTLV------EEMEPVVSSRRLNYANAIQTEVT 57
Query: 168 QPVRLLEV-NKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQ 226
+P RL EV K +++ + E RVLGGG+V GSLVLIGGDPG+GKSTLLLQ
Sbjct: 58 KPRRLTEVETKSEARIETKF-------QEFNRVLGGGIVDGSLVLIGGDPGIGKSTLLLQ 110
Query: 227 MAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQP 286
+++ +AD V+Y+SGEES +QI RADR+ + LF+ S TD++ I ++
Sbjct: 111 ISSQLAD-----SSYDVLYISGEESAKQIKLRADRLHVNGSNLFVVSETDLQRIATHIEE 165
Query: 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIA 346
++P ++IDSIQT++L V + G + QV+ECT+ L++ AK IP+ + GHVTK G IA
Sbjct: 166 MNPAFVVIDSIQTIHLPEVTSAPGSVAQVRECTAELMKLAKTKGIPIFIVGHVTKEGAIA 225
Query: 347 GPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFL 406
GPR+LEH+VDAVLY EG++ +YR+LR+VKNRFGST+E+G+FEM +LGL V NPS+IFL
Sbjct: 226 GPRMLEHMVDAVLYFEGDRHHTYRILRAVKNRFGSTNEMGIFEMKELGLAEVLNPSEIFL 285
Query: 407 SEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVL 464
E+ +AG V M+G+R L+EIQAL S R GI +R +I++VL
Sbjct: 286 EERPVG---VAGSTVVASMEGTRPVLVEIQALISPTSFGNPRRMATGIDHNRVSLIMAVL 342
Query: 465 MKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGE 524
K+ GL LQ +L V G+ L E A DLAVA +I SSF + A IGE+GL GE
Sbjct: 343 EKRTGLLLQNQDAYLKVAGGLKLDEPAIDLAVALSIASSFRDKSTAPTDAVIGEVGLTGE 402
Query: 525 LRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGF-EQMEFIGCKNLKEVINVVF 580
+R VSR+E+RV AKLG+++ I+P+ K+L + +E +G NL E + +
Sbjct: 403 IRRVSRIEQRVQEAAKLGFQRAIIPR---KNLGGWTIPDGIEVVGVSNLGEALRLTL 456
>gi|336233628|ref|YP_004586244.1| DNA repair protein RadA [Geobacillus thermoglucosidasius C56-YS93]
gi|335360483|gb|AEH46163.1| DNA repair protein RadA [Geobacillus thermoglucosidasius C56-YS93]
Length = 457
Score = 360 bits (923), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 196/443 (44%), Positives = 281/443 (63%), Gaps = 20/443 (4%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEV-QPV 170
+T +VC +CGY +W G C C + +M P + ++ + + +PV
Sbjct: 4 KKTKFVCQECGYESAKWLGRCPGCNTWNSMVEEI---ERTKPTTKGVFVHSASDIISKPV 60
Query: 171 RLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAI 230
+ V + RI +G+ +E RVLGGG+V GSLVLIGGDPG+GKSTLLLQ++A
Sbjct: 61 PITTVTATQEP---RIQ-TGI--SEFNRVLGGGIVKGSLVLIGGDPGIGKSTLLLQVSAQ 114
Query: 231 IADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPR 290
+A + V+Y+SGEESV+Q RADR+ +A+++L++ + TD+E IVE ++ + P
Sbjct: 115 LAALQH-----KVLYISGEESVKQTKLRADRLHVASDQLYVLAETDLEYIVEAIETIHPV 169
Query: 291 ALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRV 350
++IDSIQT+Y +A + G + QV+ECT+ L++ AK I + + GHVTK G IAGPR+
Sbjct: 170 CVVIDSIQTIYRADIASAPGSVSQVRECTAELMKIAKTKGITIFIVGHVTKEGAIAGPRI 229
Query: 351 LEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQH 410
LEH+VD VLY EGE+ +YR+LR+VKNRFGST+E+G+FEM + GL V NPS++FL E+
Sbjct: 230 LEHMVDTVLYFEGERHHTYRILRAVKNRFGSTNEIGIFEMRESGLVEVENPSEVFLEER- 288
Query: 411 SDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVLMKQA 468
S AG V M+G+R L+EIQAL S R GI +R ++++VL K++
Sbjct: 289 --SRGAAGSTVVAAMEGTRPVLVEIQALVSPTSFGNPRRMATGIDHNRVSLLMAVLEKRS 346
Query: 469 GLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMV 528
GL LQ +L V GV L E A DLA+A +I SSF + P IGE+GL GE+R V
Sbjct: 347 GLLLQNQDAYLKVAGGVKLDEPAIDLAIAVSIASSFRDQPTNPHDVIIGEVGLTGEVRRV 406
Query: 529 SRMEKRVSTVAKLGYRKCIVPKS 551
SR+E+RV KLG+ + I+PK+
Sbjct: 407 SRIEQRVQEAVKLGFSRMIIPKN 429
>gi|229009592|ref|ZP_04166818.1| DNA repair protein radA [Bacillus mycoides DSM 2048]
gi|423602388|ref|ZP_17578388.1| DNA repair protein RadA [Bacillus cereus VD078]
gi|423665404|ref|ZP_17640543.1| DNA repair protein RadA [Bacillus cereus VDM022]
gi|228751614|gb|EEM01414.1| DNA repair protein radA [Bacillus mycoides DSM 2048]
gi|401225927|gb|EJR32471.1| DNA repair protein RadA [Bacillus cereus VD078]
gi|401290311|gb|EJR96006.1| DNA repair protein RadA [Bacillus cereus VDM022]
Length = 458
Score = 360 bits (923), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 206/478 (43%), Positives = 293/478 (61%), Gaps = 34/478 (7%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQ----KPEEV 167
+T + C +CGY ++ G C C T+ + PVV L + E
Sbjct: 4 KKTKFTCQECGYQSPKYMGKCPGCGQWNTLV------EEMEPVVSSRRLNYANAIQSEVT 57
Query: 168 QPVRLLEV-NKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQ 226
+P RL EV K +++ + E RVLGGG+V GSLVLIGGDPG+GKSTLLLQ
Sbjct: 58 KPRRLTEVETKSEARIETKF-------QEFNRVLGGGIVDGSLVLIGGDPGIGKSTLLLQ 110
Query: 227 MAAIIAD-VHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQ 285
+++ +AD ++D V+Y+SGEES +QI RADR+ + LF+ + TD++ I ++
Sbjct: 111 ISSQLADSLYD------VLYISGEESAKQIKLRADRLHVKGSNLFVVAETDLQRIAAHIE 164
Query: 286 PLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDI 345
++P ++IDSIQT++L V + G + QV+ECT+ L++ AK IP+ + GHVTK G I
Sbjct: 165 EMNPAFVVIDSIQTIHLPEVTSAPGSVTQVRECTAELMKLAKTKGIPIFIVGHVTKEGAI 224
Query: 346 AGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIF 405
AGPR+LEH+VDAVLY EG++ +YR+LR+VKNRFGST+E+G+FEM +LGL V NPS+IF
Sbjct: 225 AGPRMLEHMVDAVLYFEGDRHHTYRILRAVKNRFGSTNEMGIFEMKELGLAEVLNPSEIF 284
Query: 406 LSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISV 463
L E+ +AG V M+G+R L+EIQAL S R GI +R +I++V
Sbjct: 285 LEERPVG---VAGSTVVASMEGTRPVLVEIQALISPTSFGNPRRMATGIDHNRVSLIMAV 341
Query: 464 LMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGG 523
L K+ GL LQ +L V G+ L E A DLAVA +I SSF + A IGE+GL G
Sbjct: 342 LEKRTGLLLQNQDAYLKVAGGLKLDEPAIDLAVALSIASSFRDKATAPADAVIGEVGLTG 401
Query: 524 ELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGF-EQMEFIGCKNLKEVINVVF 580
E+R VSR+E+RV AKLG+++ I+P+ K+L + +E +G NL E + +
Sbjct: 402 EIRRVSRIEQRVQEAAKLGFQRAIIPR---KNLGGWTIPDGIEVVGVSNLGEALRLTL 456
>gi|410027946|ref|ZP_11277782.1| DNA repair protein RadA [Marinilabilia sp. AK2]
Length = 459
Score = 360 bits (923), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 191/470 (40%), Positives = 297/470 (63%), Gaps = 19/470 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T++ C +CG +W G C +C + T + + G + + QP +L
Sbjct: 5 KTSFFCQECGAQSPKWIGKCPSCGAWNTYVEEVIQKEEAGRGNWKQGNTGIKKASQPKKL 64
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
E+N + P E+ RVLGGG+VPG+LVLIGG+PG+GKSTL+LQ+A +++
Sbjct: 65 QEINFEEQ------PRIITRDQELDRVLGGGIVPGALVLIGGEPGIGKSTLMLQIALMLS 118
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+ V+YVSGEES QI RA+RM +E ++ S T+ + I E++ L P L
Sbjct: 119 KLK-------VLYVSGEESESQIKMRAERMHFVSENCYVLSETNTQHIFEEINKLQPDIL 171
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
+IDSIQT++ + V +AG + QV+ECT L+RFAK+T PV L GH+TK G IAGP+VLE
Sbjct: 172 VIDSIQTLHSKYVESAAGSVSQVRECTGELMRFAKETGTPVFLIGHITKDGAIAGPKVLE 231
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VL EG++ SYR+LR+ KNRFGST+ELG++EM GL+ V+NPS+I L+++
Sbjct: 232 HMVDTVLQFEGDRHLSYRILRTSKNRFGSTNELGIYEMRADGLRQVANPSEILLTQRE-- 289
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMKQAGL 470
E L G+A+ +++G+R LIEIQ+L + T R G A R +M+++VL K+ G+
Sbjct: 290 -ELLNGVAIGAMLEGNRPLLIEIQSLVSPATYGTPQRSSTGFDAKRLNMLLAVLEKRGGM 348
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
+L + +F+NV G+ + + A DLAV A++ SS+ + P+P + F GE+GLGGE+R V R
Sbjct: 349 RLGQQDVFINVAGGMRVDDPALDLAVCASLISSYEDSPVPEDLCFAGEVGLGGEIRAVHR 408
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
++ R++ KLG+++ +V K A K L + + +++ + L+++ V+F
Sbjct: 409 IDNRIAEAEKLGFKRIMVSKYAVKGLDSNKY-KIKVLPLTKLEDMYQVIF 457
>gi|423718350|ref|ZP_17692532.1| DNA repair protein radA [Geobacillus thermoglucosidans TNO-09.020]
gi|383365160|gb|EID42461.1| DNA repair protein radA [Geobacillus thermoglucosidans TNO-09.020]
Length = 457
Score = 359 bits (922), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 196/443 (44%), Positives = 281/443 (63%), Gaps = 20/443 (4%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEV-QPV 170
+T +VC +CGY +W G C C + +M P + ++ + + +PV
Sbjct: 4 KKTKFVCQECGYESAKWLGRCPGCNTWNSMVEEI---ERTKPATKGVFVHSASDIISKPV 60
Query: 171 RLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAI 230
+ V + RI +G+ +E RVLGGG+V GSLVLIGGDPG+GKSTLLLQ++A
Sbjct: 61 PITTVTATQEP---RIQ-TGI--SEFNRVLGGGIVKGSLVLIGGDPGIGKSTLLLQVSAQ 114
Query: 231 IADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPR 290
+A + V+Y+SGEESV+Q RADR+ +A+++L++ + TD+E IVE ++ + P
Sbjct: 115 LAALQH-----KVLYISGEESVKQTKLRADRLHVASDQLYVLAETDLEYIVEAIETIHPV 169
Query: 291 ALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRV 350
++IDSIQT+Y +A + G + QV+ECT+ L++ AK I + + GHVTK G IAGPR+
Sbjct: 170 CVVIDSIQTIYRADIASAPGSVSQVRECTAELMKIAKTKGIAIFIVGHVTKEGAIAGPRI 229
Query: 351 LEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQH 410
LEH+VD VLY EGE+ +YR+LR+VKNRFGST+E+G+FEM + GL V NPS++FL E+
Sbjct: 230 LEHMVDTVLYFEGERHHTYRILRAVKNRFGSTNEIGIFEMRESGLVEVENPSEVFLEER- 288
Query: 411 SDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVLMKQA 468
S AG V M+G+R L+EIQAL S R GI +R ++++VL K++
Sbjct: 289 --SRGAAGSTVVAAMEGTRPVLVEIQALVSPTSFGNPRRMATGIDHNRVSLLMAVLEKRS 346
Query: 469 GLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMV 528
GL LQ +L V GV L E A DLA+A +I SSF + P IGE+GL GE+R V
Sbjct: 347 GLLLQNQDAYLKVAGGVKLDEPAIDLAIAVSIASSFRDQPTNPHDVIIGEVGLTGEVRRV 406
Query: 529 SRMEKRVSTVAKLGYRKCIVPKS 551
SR+E+RV KLG+ + I+PK+
Sbjct: 407 SRIEQRVQEAVKLGFSRMIIPKN 429
>gi|16802279|ref|NP_463764.1| DNA repair protein RadA [Listeria monocytogenes EGD-e]
gi|17433759|sp|Q48761.2|RADA_LISMO RecName: Full=DNA repair protein RadA homolog; AltName: Full=DNA
repair protein Sms homolog
gi|16409598|emb|CAD00760.1| lmo0233 [Listeria monocytogenes EGD-e]
Length = 457
Score = 359 bits (922), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 191/448 (42%), Positives = 276/448 (61%), Gaps = 22/448 (4%)
Query: 109 GKANRTN-WVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEV 167
KA RT +VC CGY +W G C C M T P K +
Sbjct: 2 AKAKRTTKFVCQACGYESAKWMGKCPNCNEWNQMVEALEPSKKSRSAFNHTGEPSKATPI 61
Query: 168 QPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQM 227
+ ++ K+++ +P E+ RVLGGG+VPGS+VL+GGDPG+GKSTLLLQ+
Sbjct: 62 TQI----ASETEKRVETNMP-------ELNRVLGGGVVPGSMVLVGGDPGIGKSTLLLQV 110
Query: 228 AAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPL 287
+A + + V+Y+SGEES++Q RA+R+ ++ + L++Y+ T++E + E + +
Sbjct: 111 SAQLTLTN-----KKVLYISGEESIKQTKLRAERLQVSGDNLYVYAETNLEAVQETIDFV 165
Query: 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAG 347
P ++IDSIQTVY V +AG + QV+ECT+ L+R AK NI + + GHVTK G IAG
Sbjct: 166 KPDFVVIDSIQTVYHSDVTSAAGSVSQVRECTATLMRIAKMQNIAIFIVGHVTKEGAIAG 225
Query: 348 PRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLS 407
PR+LEH+VD VLY EGE+ +YR+LR+VKNRFGST+E+G+FEM +GL V+NPS++FL
Sbjct: 226 PRLLEHMVDTVLYFEGERHHAYRILRAVKNRFGSTNEMGIFEMRDVGLVEVANPSEVFLE 285
Query: 408 EQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLM 465
E+ E +G V M+G+R L+EIQAL R GI ++ +I++VL
Sbjct: 286 ERL---EGASGSTVVASMEGTRPVLVEIQALVSPTMFGNAKRMATGIDYNKVSLIMAVLE 342
Query: 466 KQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGEL 525
K+ GL LQ +L GV L E A DLAVA ++ SS+ + P + FIGE+GL GE+
Sbjct: 343 KRVGLMLQNQDAYLKAAGGVKLDEPAVDLAVAVSVASSYRDKPTRSTDCFIGELGLTGEI 402
Query: 526 RMVSRMEKRVSTVAKLGYRKCIVPKSAE 553
R V+R+E+RV AKLG+++ +PK+ E
Sbjct: 403 RRVARIEQRVQEAAKLGFKRIFIPKNNE 430
>gi|170689573|ref|ZP_02880759.1| DNA repair protein RadA [Bacillus anthracis str. A0465]
gi|254684414|ref|ZP_05148274.1| DNA repair protein RadA [Bacillus anthracis str. CNEVA-9066]
gi|170666486|gb|EDT17263.1| DNA repair protein RadA [Bacillus anthracis str. A0465]
Length = 458
Score = 359 bits (922), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 206/477 (43%), Positives = 290/477 (60%), Gaps = 32/477 (6%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQ----KPEEV 167
+T + C +CGY ++ G C C T+ + PVV L + E
Sbjct: 4 KKTKFTCQECGYQSPKYMGKCPGCGQWNTLV------EEMEPVVSSRRLNYANAIQTEVT 57
Query: 168 QPVRLLEV-NKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQ 226
+P RL EV K +++ + E RVLGGG+V GSLVLIGGDPG+GKSTLLLQ
Sbjct: 58 KPRRLTEVETKSEARIETKF-------QEFNRVLGGGIVDGSLVLIGGDPGIGKSTLLLQ 110
Query: 227 MAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQP 286
+++ +AD V+Y+SGEES +QI RADR+ + LF+ S TD++ I ++
Sbjct: 111 ISSQLAD-----SSYDVLYISGEESAKQIKLRADRLHVNGSNLFVVSETDLQRIATHIEE 165
Query: 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIA 346
++P ++IDSIQT++L V + G + QV+ECT+ L++ AK IP+ + GHVTK G IA
Sbjct: 166 MNPAFVVIDSIQTIHLPEVTSAPGSVAQVRECTAELMKLAKTKGIPIFIVGHVTKEGAIA 225
Query: 347 GPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFL 406
GPR+LEH+VDAVLY EG++ +YR+LR+VKNRFGST+E+G+FEM +LGL V NPS+IFL
Sbjct: 226 GPRMLEHMVDAVLYFEGDRHHTYRILRAVKNRFGSTNEMGIFEMKELGLAEVLNPSEIFL 285
Query: 407 SEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVL 464
E+ +AG V M+G+R L+EIQAL S R GI +R +I++VL
Sbjct: 286 EERPVG---VAGSTVVASMEGTRPVLVEIQALISPTSFGNPRRMATGIDHNRVSLIMAVL 342
Query: 465 MKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGE 524
K+ GL LQ +L V G+ L E A DLAVA +I SSF + A IGE+GL GE
Sbjct: 343 EKRTGLLLQNQDAYLKVAGGLKLDEPAIDLAVALSIASSFRDKSTAPTDAVIGEVGLTGE 402
Query: 525 LRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGF-EQMEFIGCKNLKEVINVVF 580
+R VSR+E+RV AKLG+++ I+P+ K+L + +E +G NL E + +
Sbjct: 403 IRRVSRIEQRVQEAAKLGFQRAIIPR---KNLGGWTIPDGIEVVGVSNLGEALRLAL 456
>gi|427394282|ref|ZP_18887719.1| DNA repair protein RadA [Alloiococcus otitis ATCC 51267]
gi|425730077|gb|EKU92922.1| DNA repair protein RadA [Alloiococcus otitis ATCC 51267]
Length = 455
Score = 359 bits (922), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 194/474 (40%), Positives = 294/474 (62%), Gaps = 22/474 (4%)
Query: 109 GKANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQ 168
K +T +VC +CG ++ G C +C T+ D R K +
Sbjct: 2 AKKQKTIFVCQECGAESPKYLGRCPSCGKWNTLVEERV--QDRADTRNRLNFSGKRAKAA 59
Query: 169 PVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMA 228
P+ +E+ K + ++P + E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++
Sbjct: 60 PINEVEIEKEDR---IQVPFA-----EFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQIS 111
Query: 229 AIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLS 288
A + ++ L V+YV+GEES QI RA+R+ + +LY+ TD+ I E V+ +
Sbjct: 112 AFLNNIGGL-----VLYVTGEESASQIKMRAERLDLVENNFYLYAETDLSAIEETVEEIR 166
Query: 289 PRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGP 348
P LIIDSIQT++ + +AG + QV+E T++L++ AK +I + GHVTK G+IAGP
Sbjct: 167 PNFLIIDSIQTMHHPDIDSAAGSVSQVRESTASLMKIAKSNDIATFIVGHVTKEGNIAGP 226
Query: 349 RVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSE 408
R+LEH+VD VLY EG++ ++R+LR+VKNRFGST+E+ +FEM++ GL+ V NPSK+FL E
Sbjct: 227 RMLEHMVDTVLYFEGDQHQTFRILRAVKNRFGSTNEIAIFEMNEKGLKEVQNPSKLFLEE 286
Query: 409 QHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMK 466
+ + + G AV M+G+R L+EIQ+L + R +G+ SR ++++VL K
Sbjct: 287 RLAGAN---GSAVVAAMEGTRPILVEIQSLITPTAFGNAKRTASGLDYSRVSLLMAVLEK 343
Query: 467 QAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELR 526
+AGL LQ +L GV L E A DL++A +I SS+ E FIGEIGL GELR
Sbjct: 344 RAGLLLQNYDAYLKAAGGVKLDEPAIDLSIAVSIASSYKEEETDPTDCFIGEIGLTGELR 403
Query: 527 MVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
VS++E+RV+ AKLG+++ +PK+ ++ ++++ I C+ + +V+ V+F
Sbjct: 404 RVSKIEQRVTEAAKLGFKRVFIPKNNQEGWTYP--KEIQVIPCRTIGQVLQVIF 455
>gi|163938090|ref|YP_001642974.1| DNA repair protein RadA [Bacillus weihenstephanensis KBAB4]
gi|229053929|ref|ZP_04195363.1| DNA repair protein radA [Bacillus cereus AH603]
gi|229131090|ref|ZP_04260002.1| DNA repair protein radA [Bacillus cereus BDRD-ST196]
gi|229165071|ref|ZP_04292866.1| DNA repair protein radA [Bacillus cereus AH621]
gi|423370665|ref|ZP_17348070.1| DNA repair protein RadA [Bacillus cereus VD142]
gi|423485382|ref|ZP_17462064.1| DNA repair protein RadA [Bacillus cereus BtB2-4]
gi|423491107|ref|ZP_17467751.1| DNA repair protein RadA [Bacillus cereus CER057]
gi|423502097|ref|ZP_17478714.1| DNA repair protein RadA [Bacillus cereus CER074]
gi|423514653|ref|ZP_17491160.1| DNA repair protein RadA [Bacillus cereus HuA2-1]
gi|423514935|ref|ZP_17491416.1| DNA repair protein RadA [Bacillus cereus HuA2-4]
gi|423596972|ref|ZP_17572982.1| DNA repair protein RadA [Bacillus cereus VD048]
gi|423671532|ref|ZP_17646536.1| DNA repair protein RadA [Bacillus cereus VDM034]
gi|423672664|ref|ZP_17647603.1| DNA repair protein RadA [Bacillus cereus VDM062]
gi|163860287|gb|ABY41346.1| DNA repair protein RadA [Bacillus weihenstephanensis KBAB4]
gi|228618334|gb|EEK75364.1| DNA repair protein radA [Bacillus cereus AH621]
gi|228652303|gb|EEL08228.1| DNA repair protein radA [Bacillus cereus BDRD-ST196]
gi|228721347|gb|EEL72868.1| DNA repair protein radA [Bacillus cereus AH603]
gi|401073401|gb|EJP81823.1| DNA repair protein RadA [Bacillus cereus VD142]
gi|401151491|gb|EJQ58942.1| DNA repair protein RadA [Bacillus cereus CER074]
gi|401162032|gb|EJQ69391.1| DNA repair protein RadA [Bacillus cereus CER057]
gi|401168436|gb|EJQ75699.1| DNA repair protein RadA [Bacillus cereus HuA2-4]
gi|401218149|gb|EJR24833.1| DNA repair protein RadA [Bacillus cereus VD048]
gi|401291921|gb|EJR97586.1| DNA repair protein RadA [Bacillus cereus VDM034]
gi|401311524|gb|EJS16819.1| DNA repair protein RadA [Bacillus cereus VDM062]
gi|402441573|gb|EJV73523.1| DNA repair protein RadA [Bacillus cereus BtB2-4]
gi|402442053|gb|EJV73997.1| DNA repair protein RadA [Bacillus cereus HuA2-1]
Length = 458
Score = 359 bits (922), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 205/477 (42%), Positives = 290/477 (60%), Gaps = 32/477 (6%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQ----KPEEV 167
+T + C +CGY ++ G C C T+ + PVV L + E
Sbjct: 4 KKTKFTCQECGYQSPKYMGKCPGCGQWNTLV------EEMEPVVSSRRLNYANAIQSEVT 57
Query: 168 QPVRLLEV-NKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQ 226
+P RL EV K +++ + E RVLGGG+V GSLVLIGGDPG+GKSTLLLQ
Sbjct: 58 KPRRLTEVETKSEARIETKF-------QEFNRVLGGGIVDGSLVLIGGDPGIGKSTLLLQ 110
Query: 227 MAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQP 286
+++ +AD V+Y+SGEES +QI RADR+ + LF+ + TD++ I ++
Sbjct: 111 ISSQLAD-----SSYDVLYISGEESAKQIKLRADRLHVKGSNLFVVAETDLQRIAAHIEE 165
Query: 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIA 346
++P ++IDSIQT++L V + G + QV+ECT+ L++ AK IP+ + GHVTK G IA
Sbjct: 166 MNPAFVVIDSIQTIHLPEVTSAPGSVTQVRECTAELMKLAKTKGIPIFIVGHVTKEGAIA 225
Query: 347 GPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFL 406
GPR+LEH+VDAVLY EG++ +YR+LR+VKNRFGST+E+G+FEM +LGL V NPS+IFL
Sbjct: 226 GPRMLEHMVDAVLYFEGDRHHTYRILRAVKNRFGSTNEMGIFEMKELGLAEVLNPSEIFL 285
Query: 407 SEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVL 464
E+ +AG V M+G+R L+EIQAL S R GI +R +I++VL
Sbjct: 286 EERPVG---VAGSTVVASMEGTRPVLVEIQALISPTSFGNPRRMATGIDHNRVSLIMAVL 342
Query: 465 MKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGE 524
K+ GL LQ +L V G+ L E A DLAVA +I SSF + A IGE+GL GE
Sbjct: 343 EKRTGLLLQNQDAYLKVAGGLKLDEPAIDLAVALSIASSFRDKATAPADAVIGEVGLTGE 402
Query: 525 LRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGF-EQMEFIGCKNLKEVINVVF 580
+R VSR+E+RV AKLG+++ I+P+ K+L + +E +G NL E + +
Sbjct: 403 IRRVSRIEQRVQEAAKLGFQRAIIPR---KNLGGWTIPDGIEVVGVSNLGEALRLTL 456
>gi|312109234|ref|YP_003987550.1| DNA repair protein RadA [Geobacillus sp. Y4.1MC1]
gi|311214335|gb|ADP72939.1| DNA repair protein RadA [Geobacillus sp. Y4.1MC1]
Length = 457
Score = 359 bits (921), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 196/443 (44%), Positives = 281/443 (63%), Gaps = 20/443 (4%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEV-QPV 170
+T +VC +CGY +W G C C + +M P + ++ + + +PV
Sbjct: 4 KKTKFVCQECGYESAKWLGRCPGCNTWNSMVEEI---ERTKPATKGVFVHSASDIISKPV 60
Query: 171 RLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAI 230
+ V + RI +G+ +E RVLGGG+V GSLVLIGGDPG+GKSTLLLQ++A
Sbjct: 61 PITTVTATQEP---RIQ-TGI--SEFNRVLGGGIVKGSLVLIGGDPGIGKSTLLLQVSAQ 114
Query: 231 IADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPR 290
+A + V+Y+SGEESV+Q RADR+ +A+++L++ + TD+E IVE ++ + P
Sbjct: 115 LAALQH-----KVLYISGEESVKQTKLRADRLHVASDQLYVLAETDLEYIVEAIETIHPV 169
Query: 291 ALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRV 350
++IDSIQT+Y +A + G + QV+ECT+ L++ AK I + + GHVTK G IAGPR+
Sbjct: 170 CVVIDSIQTIYRADIASAPGSVSQVRECTAELMKIAKTKGITIFIVGHVTKEGAIAGPRI 229
Query: 351 LEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQH 410
LEH+VD VLY EGE+ +YR+LR+VKNRFGST+E+G+FEM + GL V NPS++FL E+
Sbjct: 230 LEHMVDTVLYFEGERHHTYRILRAVKNRFGSTNEIGIFEMRESGLVEVENPSEVFLEER- 288
Query: 411 SDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVLMKQA 468
S AG V M+G+R L+EIQAL S R GI +R ++++VL K++
Sbjct: 289 --SRGAAGSTVVAAMEGTRPVLVEIQALVSPTSFGNPRRMATGIDHNRVSLLMAVLEKRS 346
Query: 469 GLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMV 528
GL LQ +L V GV L E A DLA+A +I SSF + P IGE+GL GE+R V
Sbjct: 347 GLLLQNQDAYLKVAGGVKLDEPAIDLAIAVSIASSFRDQPTNPHDVIIGEVGLTGEVRRV 406
Query: 529 SRMEKRVSTVAKLGYRKCIVPKS 551
SR+E+RV KLG+ + I+PK+
Sbjct: 407 SRIEQRVQEAVKLGFSRMIIPKN 429
>gi|42779163|ref|NP_976410.1| DNA repair protein RadA [Bacillus cereus ATCC 10987]
gi|47569817|ref|ZP_00240487.1| DNA repair protein RadA [Bacillus cereus G9241]
gi|49479310|ref|YP_034435.1| DNA repair protein RadA [Bacillus thuringiensis serovar konkukian
str. 97-27]
gi|118475853|ref|YP_893004.1| DNA repair protein RadA [Bacillus thuringiensis str. Al Hakam]
gi|196041799|ref|ZP_03109089.1| DNA repair protein RadA [Bacillus cereus NVH0597-99]
gi|196047731|ref|ZP_03114932.1| DNA repair protein RadA [Bacillus cereus 03BB108]
gi|217957659|ref|YP_002336201.1| DNA repair protein RadA [Bacillus cereus AH187]
gi|218901284|ref|YP_002449118.1| DNA repair protein RadA [Bacillus cereus AH820]
gi|222093853|ref|YP_002527903.1| DNA repair protein rada [Bacillus cereus Q1]
gi|225862135|ref|YP_002747513.1| DNA repair protein RadA [Bacillus cereus 03BB102]
gi|228912822|ref|ZP_04076469.1| DNA repair protein radA [Bacillus thuringiensis serovar pulsiensis
BGSC 4CC1]
gi|228925336|ref|ZP_04088432.1| DNA repair protein radA [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228931585|ref|ZP_04094491.1| DNA repair protein radA [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228983338|ref|ZP_04143551.1| DNA repair protein radA [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|229136929|ref|ZP_04265556.1| DNA repair protein radA [Bacillus cereus BDRD-ST26]
gi|229153861|ref|ZP_04281991.1| DNA repair protein radA [Bacillus cereus ATCC 4342]
gi|229182477|ref|ZP_04309728.1| DNA repair protein radA [Bacillus cereus BGSC 6E1]
gi|229194473|ref|ZP_04321276.1| DNA repair protein radA [Bacillus cereus m1293]
gi|300119606|ref|ZP_07057150.1| DNA repair protein RadA [Bacillus cereus SJ1]
gi|375282180|ref|YP_005102615.1| DNA repair protein RadA [Bacillus cereus NC7401]
gi|376264110|ref|YP_005116822.1| DNA repair protein RadA [Bacillus cereus F837/76]
gi|384177988|ref|YP_005563750.1| DNA repair protein RadA [Bacillus thuringiensis serovar finitimus
YBT-020]
gi|402554331|ref|YP_006595602.1| DNA repair protein RadA [Bacillus cereus FRI-35]
gi|423357626|ref|ZP_17335221.1| DNA repair protein RadA [Bacillus cereus IS075]
gi|423376325|ref|ZP_17353639.1| DNA repair protein RadA [Bacillus cereus AND1407]
gi|423553983|ref|ZP_17530310.1| DNA repair protein RadA [Bacillus cereus ISP3191]
gi|423572074|ref|ZP_17548288.1| DNA repair protein RadA [Bacillus cereus MSX-A12]
gi|423578065|ref|ZP_17554184.1| DNA repair protein RadA [Bacillus cereus MSX-D12]
gi|423608092|ref|ZP_17583985.1| DNA repair protein RadA [Bacillus cereus VD102]
gi|42735078|gb|AAS39018.1| DNA repair protein RadA [Bacillus cereus ATCC 10987]
gi|47553510|gb|EAL11891.1| DNA repair protein RadA [Bacillus cereus G9241]
gi|49330866|gb|AAT61512.1| DNA repair protein [Bacillus thuringiensis serovar konkukian str.
97-27]
gi|118415078|gb|ABK83497.1| DNA repair protein [Bacillus thuringiensis str. Al Hakam]
gi|196021434|gb|EDX60140.1| DNA repair protein RadA [Bacillus cereus 03BB108]
gi|196027419|gb|EDX66036.1| DNA repair protein RadA [Bacillus cereus NVH0597-99]
gi|217065341|gb|ACJ79591.1| DNA repair protein RadA [Bacillus cereus AH187]
gi|218534961|gb|ACK87359.1| DNA repair protein RadA [Bacillus cereus AH820]
gi|221237901|gb|ACM10611.1| DNA repair protein [Bacillus cereus Q1]
gi|225786503|gb|ACO26720.1| DNA repair protein RadA [Bacillus cereus 03BB102]
gi|228588939|gb|EEK46954.1| DNA repair protein radA [Bacillus cereus m1293]
gi|228600932|gb|EEK58501.1| DNA repair protein radA [Bacillus cereus BGSC 6E1]
gi|228629542|gb|EEK86239.1| DNA repair protein radA [Bacillus cereus ATCC 4342]
gi|228646467|gb|EEL02674.1| DNA repair protein radA [Bacillus cereus BDRD-ST26]
gi|228776328|gb|EEM24681.1| DNA repair protein radA [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|228828013|gb|EEM73741.1| DNA repair protein radA [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228834258|gb|EEM79799.1| DNA repair protein radA [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228846758|gb|EEM91763.1| DNA repair protein radA [Bacillus thuringiensis serovar pulsiensis
BGSC 4CC1]
gi|298723078|gb|EFI63976.1| DNA repair protein RadA [Bacillus cereus SJ1]
gi|324324072|gb|ADY19332.1| DNA repair protein RadA [Bacillus thuringiensis serovar finitimus
YBT-020]
gi|358350703|dbj|BAL15875.1| DNA repair protein RadA [Bacillus cereus NC7401]
gi|364509910|gb|AEW53309.1| DNA repair protein RadA [Bacillus cereus F837/76]
gi|401074492|gb|EJP82892.1| DNA repair protein RadA [Bacillus cereus IS075]
gi|401088782|gb|EJP96964.1| DNA repair protein RadA [Bacillus cereus AND1407]
gi|401182190|gb|EJQ89329.1| DNA repair protein RadA [Bacillus cereus ISP3191]
gi|401198796|gb|EJR05709.1| DNA repair protein RadA [Bacillus cereus MSX-A12]
gi|401203645|gb|EJR10481.1| DNA repair protein RadA [Bacillus cereus MSX-D12]
gi|401238775|gb|EJR45208.1| DNA repair protein RadA [Bacillus cereus VD102]
gi|401795541|gb|AFQ09400.1| DNA repair protein RadA [Bacillus cereus FRI-35]
Length = 458
Score = 359 bits (921), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 206/477 (43%), Positives = 290/477 (60%), Gaps = 32/477 (6%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQ----KPEEV 167
+T + C +CGY ++ G C C T+ + PVV L + E
Sbjct: 4 KKTKFTCQECGYQSPKYMGKCPGCGQWNTLV------EEMEPVVSSRRLNYANAIQTEVT 57
Query: 168 QPVRLLEV-NKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQ 226
+P RL EV K +++ + E RVLGGG+V GSLVLIGGDPG+GKSTLLLQ
Sbjct: 58 KPRRLTEVETKSEARIETKF-------QEFNRVLGGGIVDGSLVLIGGDPGIGKSTLLLQ 110
Query: 227 MAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQP 286
+++ +AD V+Y+SGEES +QI RADR+ + LF+ S TD++ I ++
Sbjct: 111 ISSQLAD-----SSYDVLYISGEESAKQIKLRADRLHVNGSNLFVVSETDLQRIATHIEE 165
Query: 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIA 346
++P ++IDSIQT++L V + G + QV+ECT+ L++ AK IP+ + GHVTK G IA
Sbjct: 166 VNPAFVVIDSIQTIHLPEVTSAPGSVAQVRECTAELMKLAKTKGIPIFIVGHVTKEGAIA 225
Query: 347 GPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFL 406
GPR+LEH+VDAVLY EG++ +YR+LR+VKNRFGST+E+G+FEM +LGL V NPS+IFL
Sbjct: 226 GPRMLEHMVDAVLYFEGDRHHTYRILRAVKNRFGSTNEMGIFEMKELGLAEVLNPSEIFL 285
Query: 407 SEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVL 464
E+ +AG V M+G+R L+EIQAL S R GI +R +I++VL
Sbjct: 286 EERPVG---VAGSTVVASMEGTRPVLVEIQALISPTSFGNPRRMATGIDHNRVSLIMAVL 342
Query: 465 MKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGE 524
K+ GL LQ +L V G+ L E A DLAVA +I SSF + A IGE+GL GE
Sbjct: 343 EKRTGLLLQNQDAYLKVAGGLKLDEPAIDLAVALSIASSFRDKSTAPTDAVIGEVGLTGE 402
Query: 525 LRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGF-EQMEFIGCKNLKEVINVVF 580
+R VSR+E+RV AKLG+++ I+P+ K+L + +E +G NL E + +
Sbjct: 403 IRRVSRIEQRVQEAAKLGFQRAIIPR---KNLGGWTIPDGIEVVGVSNLGEALRLTL 456
>gi|422414678|ref|ZP_16491635.1| DNA repair protein RadA [Listeria innocua FSL J1-023]
gi|313625373|gb|EFR95163.1| DNA repair protein RadA [Listeria innocua FSL J1-023]
Length = 457
Score = 359 bits (921), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 191/448 (42%), Positives = 276/448 (61%), Gaps = 22/448 (4%)
Query: 109 GKANRTN-WVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEV 167
KA RT +VC CGY +W G C C M T P K +
Sbjct: 2 AKAKRTTKFVCQSCGYESAKWMGKCPNCNEWNQMVEALEPSKKSRSAFNHTGEPSKATPI 61
Query: 168 QPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQM 227
+ ++ +++ +P E+ RVLGGG+VPGS+VL+GGDPG+GKSTLLLQ+
Sbjct: 62 TQI----ASEEEARVETNMP-------ELNRVLGGGVVPGSMVLVGGDPGIGKSTLLLQV 110
Query: 228 AAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPL 287
+A + + V+Y+SGEES++Q RA+R+ ++ + L++Y+ T++E + E + +
Sbjct: 111 SAQLTLTN-----KKVLYISGEESIKQTKLRAERLQVSGDNLYVYAETNLEAVQETIDFV 165
Query: 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAG 347
P ++IDSIQTVY V +AG + QV+ECT+AL+R AK NI + + GHVTK G IAG
Sbjct: 166 KPDFVVIDSIQTVYHPDVTSAAGSVSQVRECTAALMRIAKMQNIAIFIVGHVTKEGAIAG 225
Query: 348 PRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLS 407
PR+LEH+VD VLY EGE+ +YR+LR+VKNRFGST+E+G+FEM +GL V+NPS++FL
Sbjct: 226 PRLLEHMVDTVLYFEGERHHAYRILRAVKNRFGSTNEMGIFEMRDIGLVEVANPSEVFLE 285
Query: 408 EQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLM 465
E+ E +G V M+G+R L+EIQAL R GI ++ +I++VL
Sbjct: 286 ERL---EGASGSTVVASMEGTRPVLVEIQALVSPTMFGNAKRMATGIDYNKVSLIMAVLE 342
Query: 466 KQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGEL 525
K+ GL LQ +L GV L E A DLAVA ++ SS+ + P + FIGE+GL GE+
Sbjct: 343 KRVGLMLQNQDAYLKAAGGVKLDEPAVDLAVAVSVASSYRDKPTRSTDCFIGELGLTGEI 402
Query: 526 RMVSRMEKRVSTVAKLGYRKCIVPKSAE 553
R V+R+E+RV AKLG+++ +PK+ E
Sbjct: 403 RRVARIEQRVQEAAKLGFKRIFIPKNNE 430
>gi|16799342|ref|NP_469610.1| DNA repair protein RadA [Listeria innocua Clip11262]
gi|422411602|ref|ZP_16488561.1| DNA repair protein RadA [Listeria innocua FSL S4-378]
gi|423099293|ref|ZP_17087000.1| DNA repair protein RadA [Listeria innocua ATCC 33091]
gi|20139538|sp|Q92F42.1|RADA_LISIN RecName: Full=DNA repair protein RadA homolog; AltName: Full=DNA
repair protein Sms homolog
gi|16412694|emb|CAC95498.1| lin0265 [Listeria innocua Clip11262]
gi|313620941|gb|EFR92110.1| DNA repair protein RadA [Listeria innocua FSL S4-378]
gi|370794191|gb|EHN61973.1| DNA repair protein RadA [Listeria innocua ATCC 33091]
Length = 457
Score = 359 bits (921), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 191/448 (42%), Positives = 276/448 (61%), Gaps = 22/448 (4%)
Query: 109 GKANRTN-WVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEV 167
KA RT +VC CGY +W G C C M T P K +
Sbjct: 2 AKAKRTTKFVCQSCGYESAKWMGKCPNCNEWNQMVEALEPSKKSRSAFNHTGEPSKATPI 61
Query: 168 QPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQM 227
+ ++ +++ +P E+ RVLGGG+VPGS+VL+GGDPG+GKSTLLLQ+
Sbjct: 62 TQI----ASEEEARVETNMP-------ELNRVLGGGVVPGSMVLVGGDPGIGKSTLLLQV 110
Query: 228 AAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPL 287
+A + + V+Y+SGEES++Q RA+R+ ++ + L++Y+ T++E + E + +
Sbjct: 111 SAQLTLTN-----KKVLYISGEESIKQTKLRAERLQVSGDNLYVYAETNLEAVQETIDFV 165
Query: 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAG 347
P ++IDSIQTVY V +AG + QV+ECT+AL+R AK NI + + GHVTK G IAG
Sbjct: 166 KPDFVVIDSIQTVYHPDVTSAAGSVSQVRECTAALMRIAKMQNIAIFIVGHVTKEGAIAG 225
Query: 348 PRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLS 407
PR+LEH+VD VLY EGE+ +YR+LR+VKNRFGST+E+G+FEM +GL V+NPS++FL
Sbjct: 226 PRLLEHMVDTVLYFEGERHHAYRILRAVKNRFGSTNEMGIFEMRDIGLVEVANPSEVFLE 285
Query: 408 EQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLM 465
E+ E +G V M+G+R L+EIQAL R GI ++ +I++VL
Sbjct: 286 ERL---EGASGSTVVASMEGTRPVLVEIQALVSPTMFGNAKRMATGIDYNKVSLIMAVLE 342
Query: 466 KQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGEL 525
K+ GL LQ +L GV L E A DLAVA ++ SS+ + P + FIGE+GL GE+
Sbjct: 343 KRVGLMLQNQDAYLKAAGGVKLDEPAVDLAVAVSVASSYRDKPTRSTDCFIGELGLTGEI 402
Query: 526 RMVSRMEKRVSTVAKLGYRKCIVPKSAE 553
R V+R+E+RV AKLG+++ +PK+ E
Sbjct: 403 RRVARIEQRVQEAAKLGFKRIFIPKNNE 430
>gi|389816089|ref|ZP_10207276.1| DNA repair protein RadA [Planococcus antarcticus DSM 14505]
gi|388465353|gb|EIM07671.1| DNA repair protein RadA [Planococcus antarcticus DSM 14505]
Length = 458
Score = 359 bits (921), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 202/476 (42%), Positives = 291/476 (61%), Gaps = 30/476 (6%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKR---YSAGESDEGPVVQRTWLPQKPEEVQ 168
+T ++C CGY +W G C C S TM + + G PQK +
Sbjct: 4 KKTKFICQSCGYESARWMGKCPGCASWNTMTEEVEVAVPKGTRGAFQHSVSAPQKATPIN 63
Query: 169 PVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMA 228
+ + + +L +E+ RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++
Sbjct: 64 AIETQDEPRVETEL-----------SELNRVLGGGIVPGSLVLIGGDPGIGKSTLLLQVS 112
Query: 229 AIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLS 288
A++A+ + V+Y+SGEES+ Q RA+R+ ++ ELF+Y+ T++E I ++ ++
Sbjct: 113 AMLANSGNR-----VLYISGEESIRQTKLRAERLDASSSELFIYAETNLELIHHTIEDVA 167
Query: 289 PRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGP 348
P +I+DSIQTV+ V + G + QV+E T+ L+R AK NI + L GHVTK G IAGP
Sbjct: 168 PDFVIVDSIQTVHHPEVTSAPGSVTQVRESTAELMRIAKTKNIAIFLVGHVTKEGQIAGP 227
Query: 349 RVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSE 408
R+LEH+VD VLY EGE+ +YR+LRSVKNRFGST+E+ +FEM Q GL+ V NPS++FL E
Sbjct: 228 RILEHMVDTVLYFEGERHHTYRILRSVKNRFGSTNEIAIFEMLQGGLKEVLNPSELFLQE 287
Query: 409 QHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMK 466
+ S S AG V M+G+R L+EIQAL S R GI +R ++++VL K
Sbjct: 288 RSSGS---AGSTVVASMEGTRPILVEIQALVTPSSFNYPKRMATGIDVNRVTLLMAVLEK 344
Query: 467 QAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGI-AFIGEIGLGGEL 525
+ G+ LQ ++ V GV L E A DLAV A+I SSF + PN IGE+GL GE+
Sbjct: 345 RVGMLLQAQDAYIKVAGGVKLDEPAIDLAVLASIVSSFRD-KAPNVYDCIIGEVGLTGEV 403
Query: 526 RMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGF-EQMEFIGCKNLKEVINVVF 580
R VSR+E+RV AKLG+++ I+P S +L + E + +G +++ + + +F
Sbjct: 404 RRVSRIEQRVQEAAKLGFKRAIIPAS---NLGGWDYPEGIRVVGVESVNDALKEIF 456
>gi|311029020|ref|ZP_07707110.1| DNA repair protein RadA [Bacillus sp. m3-13]
Length = 458
Score = 359 bits (921), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 203/446 (45%), Positives = 272/446 (60%), Gaps = 32/446 (7%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQR-------TWLPQKPE 165
+T ++C +CGY +W G C C + TM E +E +R + L +K E
Sbjct: 5 KTKFMCKECGYESPKWMGKCPGCNAWNTM----VEELEESRTPRRGGFTTSSSTLARKAE 60
Query: 166 EVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLL 225
+ V ++ ++ ++ E RVLGGGLV GSLVLIGGDPG+GKSTLLL
Sbjct: 61 SITKVENIKQSRIYTDME-----------ECNRVLGGGLVQGSLVLIGGDPGIGKSTLLL 109
Query: 226 QMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQ 285
Q+ + +A + V+Y+SGEESV+Q RADR+ + EELF+ S TD E + + V
Sbjct: 110 QVCSQLAL-----KKHRVLYISGEESVQQTKLRADRLGVQAEELFVLSETDFELVAKAVD 164
Query: 286 PLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDI 345
+ P L++DSIQTVY V + G + QV+ECT+ L+R AK NI V + GHVTK G I
Sbjct: 165 DVQPTLLVVDSIQTVYHPAVTSAPGSVSQVRECTAELMRIAKTKNIAVFIVGHVTKEGSI 224
Query: 346 AGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIF 405
AGPR+LEH+VD VLY EGE+ +YR+LRSVKNRFGST+E+G+FEM + GL V NPS+IF
Sbjct: 225 AGPRLLEHMVDTVLYFEGERHHTYRILRSVKNRFGSTNEIGIFEMKEEGLTEVKNPSEIF 284
Query: 406 LSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISV 463
L E+ S+ AG V M+G+R L+EIQAL R GI +R +I++V
Sbjct: 285 LEER---SKGAAGSTVVASMEGTRPVLVEIQALISPTGYGNPRRMATGIDHNRVSLIMAV 341
Query: 464 LMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGG 523
L K+ GL LQ +L V GV L E A DLAVA +I SSF IGE+GL G
Sbjct: 342 LEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAVAVSIASSFRNQTSEPTDVVIGEVGLTG 401
Query: 524 ELRMVSRMEKRVSTVAKLGYRKCIVP 549
E+R VSR+E+RV AKLG+++ I+P
Sbjct: 402 EIRRVSRIEQRVQEAAKLGFKRVIIP 427
>gi|46906466|ref|YP_012855.1| DNA repair protein RadA [Listeria monocytogenes serotype 4b str.
F2365]
gi|47093953|ref|ZP_00231689.1| DNA repair protein RadA [Listeria monocytogenes str. 4b H7858]
gi|47097424|ref|ZP_00234972.1| DNA repair protein RadA [Listeria monocytogenes str. 1/2a F6854]
gi|226222862|ref|YP_002756969.1| DNA repair protein Sms [Listeria monocytogenes serotype 4b str.
CLIP 80459]
gi|254828693|ref|ZP_05233380.1| DNA repair protein RadA [Listeria monocytogenes FSL N3-165]
gi|254853500|ref|ZP_05242848.1| DNA repair protein RadA [Listeria monocytogenes FSL R2-503]
gi|254913463|ref|ZP_05263475.1| DNA repair protein RadA [Listeria monocytogenes J2818]
gi|254932451|ref|ZP_05265810.1| DNA repair protein RadA [Listeria monocytogenes HPB2262]
gi|254937956|ref|ZP_05269653.1| DNA repair protein RadA [Listeria monocytogenes F6900]
gi|284800528|ref|YP_003412393.1| DNA repair protein RadA [Listeria monocytogenes 08-5578]
gi|284993714|ref|YP_003415482.1| DNA repair protein RadA [Listeria monocytogenes 08-5923]
gi|300764642|ref|ZP_07074634.1| DNA repair protein RadA [Listeria monocytogenes FSL N1-017]
gi|386045870|ref|YP_005964202.1| DNA repair protein RadA [Listeria monocytogenes J0161]
gi|386049162|ref|YP_005967153.1| DNA repair protein RadA [Listeria monocytogenes FSL R2-561]
gi|386052510|ref|YP_005970068.1| DNA repair protein RadA [Listeria monocytogenes Finland 1998]
gi|386730998|ref|YP_006204494.1| DNA repair protein RadA [Listeria monocytogenes 07PF0776]
gi|404279783|ref|YP_006680681.1| DNA repair protein [Listeria monocytogenes SLCC2755]
gi|404282665|ref|YP_006683562.1| DNA repair protein [Listeria monocytogenes SLCC2372]
gi|404285600|ref|YP_006692186.1| DNA repair protein [Listeria monocytogenes serotype 7 str.
SLCC2482]
gi|404412334|ref|YP_006697921.1| DNA repair protein [Listeria monocytogenes SLCC7179]
gi|405748576|ref|YP_006672042.1| DNA repair protein [Listeria monocytogenes ATCC 19117]
gi|405751450|ref|YP_006674915.1| DNA repair protein [Listeria monocytogenes SLCC2378]
gi|405754318|ref|YP_006677782.1| DNA repair protein [Listeria monocytogenes SLCC2540]
gi|405757221|ref|YP_006686497.1| DNA repair protein [Listeria monocytogenes SLCC2479]
gi|406703006|ref|YP_006753360.1| DNA repair protein [Listeria monocytogenes L312]
gi|417314283|ref|ZP_12100984.1| DNA repair protein RadA [Listeria monocytogenes J1816]
gi|424821964|ref|ZP_18246977.1| radA-like protein [Listeria monocytogenes str. Scott A]
gi|46879730|gb|AAT03032.1| DNA repair protein RadA [Listeria monocytogenes serotype 4b str.
F2365]
gi|47014201|gb|EAL05186.1| DNA repair protein RadA [Listeria monocytogenes str. 1/2a F6854]
gi|47017674|gb|EAL08471.1| DNA repair protein RadA [Listeria monocytogenes str. 4b H7858]
gi|225875324|emb|CAS04021.1| Putative DNA repair protein Sms [Listeria monocytogenes serotype 4b
str. CLIP 80459]
gi|258601097|gb|EEW14422.1| DNA repair protein RadA [Listeria monocytogenes FSL N3-165]
gi|258606872|gb|EEW19480.1| DNA repair protein RadA [Listeria monocytogenes FSL R2-503]
gi|258610566|gb|EEW23174.1| DNA repair protein RadA [Listeria monocytogenes F6900]
gi|284056090|gb|ADB67031.1| DNA repair protein RadA [Listeria monocytogenes 08-5578]
gi|284059181|gb|ADB70120.1| DNA repair protein RadA [Listeria monocytogenes 08-5923]
gi|293584008|gb|EFF96040.1| DNA repair protein RadA [Listeria monocytogenes HPB2262]
gi|293591470|gb|EFF99804.1| DNA repair protein RadA [Listeria monocytogenes J2818]
gi|300514749|gb|EFK41804.1| DNA repair protein RadA [Listeria monocytogenes FSL N1-017]
gi|328467844|gb|EGF38884.1| DNA repair protein RadA [Listeria monocytogenes J1816]
gi|332310644|gb|EGJ23739.1| radA-like protein [Listeria monocytogenes str. Scott A]
gi|345532861|gb|AEO02302.1| DNA repair protein RadA [Listeria monocytogenes J0161]
gi|346423008|gb|AEO24533.1| DNA repair protein RadA [Listeria monocytogenes FSL R2-561]
gi|346645161|gb|AEO37786.1| DNA repair protein RadA [Listeria monocytogenes Finland 1998]
gi|384389756|gb|AFH78826.1| DNA repair protein RadA [Listeria monocytogenes 07PF0776]
gi|404217776|emb|CBY69140.1| DNA repair protein [Listeria monocytogenes ATCC 19117]
gi|404220650|emb|CBY72013.1| DNA repair protein [Listeria monocytogenes SLCC2378]
gi|404223518|emb|CBY74880.1| DNA repair protein [Listeria monocytogenes SLCC2540]
gi|404226418|emb|CBY47823.1| DNA repair protein [Listeria monocytogenes SLCC2755]
gi|404232167|emb|CBY53570.1| DNA repair protein [Listeria monocytogenes SLCC2372]
gi|404235103|emb|CBY56505.1| DNA repair protein [Listeria monocytogenes SLCC2479]
gi|404238033|emb|CBY59434.1| DNA repair protein [Listeria monocytogenes SLCC7179]
gi|404244529|emb|CBY02754.1| DNA repair protein [Listeria monocytogenes serotype 7 str.
SLCC2482]
gi|406360036|emb|CBY66309.1| DNA repair protein [Listeria monocytogenes L312]
gi|441469782|emb|CCQ19537.1| DNA repair protein RadA homolog [Listeria monocytogenes]
gi|441472918|emb|CCQ22672.1| DNA repair protein RadA homolog [Listeria monocytogenes N53-1]
Length = 457
Score = 359 bits (921), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 191/448 (42%), Positives = 276/448 (61%), Gaps = 22/448 (4%)
Query: 109 GKANRTN-WVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEV 167
KA RT +VC CGY +W G C C M T P K +
Sbjct: 2 AKAKRTTKFVCQACGYESAKWMGKCPNCNEWNQMVEALEPSKKSRSAFNHTGEPSKATPI 61
Query: 168 QPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQM 227
+ ++ K+++ +P E+ RVLGGG+VPGS+VL+GGDPG+GKSTLLLQ+
Sbjct: 62 TQI----ASETEKRVETNMP-------ELNRVLGGGVVPGSMVLVGGDPGIGKSTLLLQV 110
Query: 228 AAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPL 287
+A + + V+Y+SGEES++Q RA+R+ ++ + L++Y+ T++E + E + +
Sbjct: 111 SAQLTLTN-----KKVLYISGEESIKQTKLRAERLQVSGDNLYVYAETNLEAVQETIDFV 165
Query: 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAG 347
P ++IDSIQTVY V +AG + QV+ECT+ L+R AK NI + + GHVTK G IAG
Sbjct: 166 KPDFVVIDSIQTVYHPDVTSAAGSVSQVRECTATLMRIAKMQNIAIFIVGHVTKEGAIAG 225
Query: 348 PRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLS 407
PR+LEH+VD VLY EGE+ +YR+LR+VKNRFGST+E+G+FEM +GL V+NPS++FL
Sbjct: 226 PRLLEHMVDTVLYFEGERHHAYRILRAVKNRFGSTNEMGIFEMRDVGLVEVANPSEVFLE 285
Query: 408 EQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLM 465
E+ E +G V M+G+R L+EIQAL R GI ++ +I++VL
Sbjct: 286 ERL---EGASGSTVVASMEGTRPVLVEIQALVSPTMFGNAKRMATGIDYNKVSLIMAVLE 342
Query: 466 KQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGEL 525
K+ GL LQ +L GV L E A DLAVA ++ SS+ + P + FIGE+GL GE+
Sbjct: 343 KRVGLMLQNQDAYLKAAGGVKLDEPAVDLAVAVSVASSYRDKPTRSTDCFIGELGLTGEI 402
Query: 526 RMVSRMEKRVSTVAKLGYRKCIVPKSAE 553
R V+R+E+RV AKLG+++ +PK+ E
Sbjct: 403 RRVARIEQRVQEAAKLGFKRIFIPKNNE 430
>gi|435852943|ref|YP_007314262.1| DNA repair protein RadA [Halobacteroides halobius DSM 5150]
gi|433669354|gb|AGB40169.1| DNA repair protein RadA [Halobacteroides halobius DSM 5150]
Length = 456
Score = 359 bits (921), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 192/474 (40%), Positives = 302/474 (63%), Gaps = 31/474 (6%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPV-- 170
+ ++C +CGY +W G C C+S T+ V+ P++ ++ Q V
Sbjct: 5 KKRYICQECGYQALKWSGQCPGCDSWNTL-------------VEEIINPKQEKKEQQVTA 51
Query: 171 --RLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMA 228
L ++K +++ R L+ F E+ RVLGGG+VPGSL+LIGGDPG+GKSTLLLQ +
Sbjct: 52 NVNLETIDKIETKVEDR--LTSNF-QELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQAS 108
Query: 229 AIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLS 288
I++ +D V+YV+GEES Q+ RA+R+ + L++ + T++ ++ ++ L+
Sbjct: 109 YNISEEYD-----KVMYVTGEESRRQVKLRANRLEAISSSLYILAETNLLSVINSIKELN 163
Query: 289 PRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGP 348
P ++IDSIQT++ + + G + QV++ T+ L++ AKK IPV + GHVTK G IAGP
Sbjct: 164 PDLVVIDSIQTIHNPNLDSAPGSVSQVRDATNRLMKLAKKDGIPVFVVGHVTKQGSIAGP 223
Query: 349 RVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSE 408
+VLEH+VD VLY EG++ YR+LR+VKNRFGST+E+G+FEM Q GL+ V NPS+ F++E
Sbjct: 224 KVLEHMVDTVLYFEGDRHRDYRILRAVKNRFGSTNEVGIFEMQQSGLEEVLNPSQAFIAE 283
Query: 409 QHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMK 466
+ E ++G + ++GSR LIE+QAL S + T SR GI R +I++VL K
Sbjct: 284 R---PEGVSGSVIIPCLEGSRPILIELQALASSANFGTPSRMTTGIDHKRVSLILAVLEK 340
Query: 467 QAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELR 526
+ GL LQ +++N+V G + E A DL +A AI SSF + + +A IGE+GL GE+R
Sbjct: 341 RLGLHLQNQDVYINIVGGFQVDEPAIDLGMAIAIVSSFRDVSVSEKLAVIGEVGLSGEVR 400
Query: 527 MVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+S++EKRV +KLG+ + I+PKS + L++ ++ + G N++EV++++
Sbjct: 401 AISQIEKRVKEASKLGFSQFIIPKSNLQGLSS-AYQDLTINGVANVREVLDLIL 453
>gi|52145134|ref|YP_081694.1| DNA repair protein RadA [Bacillus cereus E33L]
gi|51978603|gb|AAU20153.1| DNA repair protein [Bacillus cereus E33L]
Length = 458
Score = 359 bits (921), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 206/477 (43%), Positives = 290/477 (60%), Gaps = 32/477 (6%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQ----KPEEV 167
+T + C +CGY ++ G C C T+ + PVV L + E
Sbjct: 4 KKTKFTCQECGYQSPKYMGKCPGCGQWNTLV------EEMEPVVSSRRLNYANAIQSEVT 57
Query: 168 QPVRLLEV-NKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQ 226
+P RL EV K +++ + E RVLGGG+V GSLVLIGGDPG+GKSTLLLQ
Sbjct: 58 KPRRLTEVETKSEARIETKF-------QEFNRVLGGGIVDGSLVLIGGDPGIGKSTLLLQ 110
Query: 227 MAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQP 286
+++ +AD V+Y+SGEES +QI RADR+ + LF+ S TD++ I ++
Sbjct: 111 ISSQLAD-----SSYDVLYISGEESAKQIKLRADRLHVNGSNLFVVSETDLQRIAAHIEE 165
Query: 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIA 346
++P ++IDSIQT++L V + G + QV+ECT+ L++ AK IP+ + GHVTK G IA
Sbjct: 166 VNPAFVVIDSIQTIHLPEVTSAPGSVAQVRECTAELMKLAKTKGIPIFIVGHVTKEGAIA 225
Query: 347 GPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFL 406
GPR+LEH+VDAVLY EG++ +YR+LR+VKNRFGST+E+G+FEM +LGL V NPS+IFL
Sbjct: 226 GPRMLEHMVDAVLYFEGDRHHTYRILRAVKNRFGSTNEMGIFEMKELGLAEVLNPSEIFL 285
Query: 407 SEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVL 464
E+ +AG V M+G+R L+EIQAL S R GI +R +I++VL
Sbjct: 286 EERPVG---VAGSTVVASMEGTRPVLVEIQALISPTSFGNPRRMATGIDHNRVSLIMAVL 342
Query: 465 MKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGE 524
K+ GL LQ +L V G+ L E A DLAVA +I SSF + A IGE+GL GE
Sbjct: 343 EKRTGLLLQNQDAYLKVAGGLKLDEPAIDLAVALSIASSFRDKSTAPTDAVIGEVGLTGE 402
Query: 525 LRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGF-EQMEFIGCKNLKEVINVVF 580
+R VSR+E+RV AKLG+++ I+P+ K+L + +E +G NL E + +
Sbjct: 403 IRRVSRIEQRVQEAAKLGFQRAIIPR---KNLGGWTIPDGIEVVGVSNLGEALRLTL 456
>gi|350264185|ref|YP_004875492.1| DNA repair protein RadA [Bacillus subtilis subsp. spizizenii
TU-B-10]
gi|349597072|gb|AEP84860.1| DNA repair protein RadA [Bacillus subtilis subsp. spizizenii
TU-B-10]
Length = 458
Score = 359 bits (921), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 200/470 (42%), Positives = 281/470 (59%), Gaps = 26/470 (5%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKR---YSAGESDEGPVVQRTWLPQKPEEVQ 168
++ ++C CGY +W G C C + TM A + QKP +
Sbjct: 4 TKSKFICQSCGYESPKWMGKCPGCGAWNTMVEEMIKKAPANRRAAFSHSVQTVQKPSPIT 63
Query: 169 PVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMA 228
+ E + QL E RVLGGG+V GSLVLIGGDPG+GKSTLLLQ++
Sbjct: 64 SIETSEEPRVKTQL-----------GEFNRVLGGGVVKGSLVLIGGDPGIGKSTLLLQVS 112
Query: 229 AIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLS 288
A ++D + V+Y+SGEESV+Q RADR+ I + L + S TD+E I +Q ++
Sbjct: 113 AQLSDSSN-----SVLYISGEESVKQTKLRADRLGINSPSLHVLSETDMEYISSAIQEMN 167
Query: 289 PRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGP 348
P +++DSIQTVY + + G + QV+ECT+ L++ AK IP+ + GHVTK G IAGP
Sbjct: 168 PAFVVVDSIQTVYQSDITSAPGSVSQVRECTAELMKIAKTKGIPIFIVGHVTKEGSIAGP 227
Query: 349 RVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSE 408
R+LEH+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM + GL V NPS+IFL E
Sbjct: 228 RLLEHMVDTVLYFEGERHHTFRILRAVKNRFGSTNEMGIFEMREEGLTEVLNPSEIFLEE 287
Query: 409 QHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVLMK 466
+ + S AG ++ M+G+R L+EIQAL S R GI +R ++++VL K
Sbjct: 288 RSAGS---AGSSITASMEGTRPILVEIQALISPTSFGNPRRMATGIDHNRVSLLMAVLEK 344
Query: 467 QAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELR 526
+ GL LQ +L V GV L E A DLA+A +I SSF + P FIGE+GL GE+R
Sbjct: 345 RVGLLLQNQDAYLKVAGGVKLDEPAIDLAIAISIASSFKDTPPNPADCFIGEVGLTGEVR 404
Query: 527 MVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVI 576
VSR+E+RV AKLG+++ I+P + + +E IG N+ E +
Sbjct: 405 RVSRIEQRVKEAAKLGFKRMIIPAANLDGWTKP--KGIEVIGVANVAEAL 452
>gi|254825723|ref|ZP_05230724.1| DNA repair protein RadA [Listeria monocytogenes FSL J1-194]
gi|255520323|ref|ZP_05387560.1| DNA repair protein RadA [Listeria monocytogenes FSL J1-175]
gi|293594967|gb|EFG02728.1| DNA repair protein RadA [Listeria monocytogenes FSL J1-194]
Length = 457
Score = 358 bits (920), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 191/448 (42%), Positives = 276/448 (61%), Gaps = 22/448 (4%)
Query: 109 GKANRTN-WVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEV 167
KA RT +VC CGY +W G C C M T P K +
Sbjct: 2 AKAKRTTKFVCQACGYESAKWMGKCPNCNEWNQMVEALEPSKKSRSAFNHTGEPSKATPI 61
Query: 168 QPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQM 227
+ ++ K+++ +P E+ RVLGGG+VPGS+VL+GGDPG+GKSTLLLQ+
Sbjct: 62 TQI----ASETEKRVETNMP-------ELNRVLGGGVVPGSMVLVGGDPGIGKSTLLLQV 110
Query: 228 AAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPL 287
+A + + V+Y+SGEES++Q RA+R+ ++ + L++Y+ T++E + E + +
Sbjct: 111 SAQLTLTN-----KKVLYISGEESIKQTKLRAERLQVSGDNLYVYAETNLEAVQETIDFV 165
Query: 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAG 347
P ++IDSIQTVY V +AG + QV+ECT+ L+R AK NI + + GHVTK G IAG
Sbjct: 166 KPDFVVIDSIQTVYHPDVTSAAGSVSQVRECTATLMRIAKMQNIAIFIVGHVTKEGAIAG 225
Query: 348 PRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLS 407
PR+LEH+VD VLY EGE+ +YR+LR+VKNRFGST+E+G+FEM +GL V+NPS++FL
Sbjct: 226 PRLLEHMVDTVLYFEGERHHAYRILRAVKNRFGSTNEMGIFEMRDVGLVEVANPSEVFLE 285
Query: 408 EQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLM 465
E+ E +G V M+G+R L+EIQAL V R GI ++ +I++VL
Sbjct: 286 ERL---EGASGSTVVASMEGTRPVLVEIQALVSPTMFGNVKRMATGIDYNKVSLIMAVLE 342
Query: 466 KQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGEL 525
K+ GL LQ +L GV L E A DLAVA ++ SS+ + P + FIGE+GL GE+
Sbjct: 343 KRVGLMLQNQDAYLKAAGGVKLDEPAVDLAVAVSVASSYRDKPTRSTDCFIGELGLTGEI 402
Query: 526 RMVSRMEKRVSTVAKLGYRKCIVPKSAE 553
R V+R+E+RV KLG+++ +PK+ E
Sbjct: 403 RRVARIEQRVQEATKLGFKRIFIPKNNE 430
>gi|423456296|ref|ZP_17433149.1| DNA repair protein RadA [Bacillus cereus BAG5X1-1]
gi|423473108|ref|ZP_17449850.1| DNA repair protein RadA [Bacillus cereus BAG6O-2]
gi|423526415|ref|ZP_17502864.1| DNA repair protein RadA [Bacillus cereus HuA4-10]
gi|401130895|gb|EJQ38550.1| DNA repair protein RadA [Bacillus cereus BAG5X1-1]
gi|401163465|gb|EJQ70811.1| DNA repair protein RadA [Bacillus cereus HuA4-10]
gi|402426606|gb|EJV58727.1| DNA repair protein RadA [Bacillus cereus BAG6O-2]
Length = 458
Score = 358 bits (920), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 205/477 (42%), Positives = 290/477 (60%), Gaps = 32/477 (6%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQ----KPEEV 167
+T + C +CGY ++ G C C T+ + PVV L + E
Sbjct: 4 KKTKFTCQECGYQSPKYMGKCPGCGKWNTLV------EEMEPVVSSRRLNYANAIQSEVT 57
Query: 168 QPVRLLEV-NKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQ 226
+P RL EV K +++ + E RVLGGG+V GSLVLIGGDPG+GKSTLLLQ
Sbjct: 58 KPRRLTEVETKSEARIETKF-------QEFNRVLGGGIVDGSLVLIGGDPGIGKSTLLLQ 110
Query: 227 MAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQP 286
+++ +AD V+Y+SGEES +QI RADR+ + LF+ + TD++ I ++
Sbjct: 111 ISSQLAD-----SSYDVLYISGEESAKQIKLRADRLHVKGSNLFVVAETDLQRIAAHIEE 165
Query: 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIA 346
++P ++IDSIQT++L V + G + QV+ECT+ L++ AK IP+ + GHVTK G IA
Sbjct: 166 MNPAFVVIDSIQTIHLPEVTSAPGSVAQVRECTAELMKLAKTKGIPIFIVGHVTKEGAIA 225
Query: 347 GPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFL 406
GPR+LEH+VDAVLY EG++ +YR+LR+VKNRFGST+E+G+FEM +LGL V NPS+IFL
Sbjct: 226 GPRMLEHMVDAVLYFEGDRHHTYRILRAVKNRFGSTNEMGIFEMKELGLAEVLNPSEIFL 285
Query: 407 SEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVL 464
E+ +AG V M+G+R L+EIQAL S R GI +R +I++VL
Sbjct: 286 EERPVG---VAGSTVVASMEGTRPVLVEIQALISPTSFGNPRRMATGIDHNRVSLIMAVL 342
Query: 465 MKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGE 524
K+ GL LQ +L V G+ L E A DLAVA +I SSF + A IGE+GL GE
Sbjct: 343 EKRTGLLLQNQDAYLKVAGGLKLDEPAIDLAVALSIASSFRDKATAPTDAVIGEVGLTGE 402
Query: 525 LRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGF-EQMEFIGCKNLKEVINVVF 580
+R VSR+E+RV AKLG+++ I+P+ K+L + +E +G NL E + +
Sbjct: 403 IRRVSRIEQRVQEAAKLGFQRAIIPR---KNLGGWTIPDGIEVVGVSNLGEALRLTL 456
>gi|347547704|ref|YP_004854032.1| putative DNA repair protein Sms [Listeria ivanovii subsp. ivanovii
PAM 55]
gi|346980775|emb|CBW84682.1| Putative DNA repair protein Sms [Listeria ivanovii subsp. ivanovii
PAM 55]
Length = 457
Score = 358 bits (920), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 194/455 (42%), Positives = 283/455 (62%), Gaps = 36/455 (7%)
Query: 109 GKANRTN-WVCSDCGYTDGQWWGMCRAC-------ESVGTMKRYSAGESDEGPVVQRTWL 160
KA RT +VC CGY +W G C C E++ K+ + + G + T +
Sbjct: 2 AKAKRTTKFVCQACGYESPKWMGKCPNCNEWNQMVEALEPSKKSRSAFNHTGEAAKATPI 61
Query: 161 PQKPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGK 220
Q E + +++ R+P E+ RVLGGG+VPGS+VL+GGDPG+GK
Sbjct: 62 TQIASEEEA-----------RVETRMP-------ELNRVLGGGVVPGSMVLVGGDPGIGK 103
Query: 221 STLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDI 280
STLLLQ++A + + V+Y+SGEES++Q RA+R+ ++ + L++Y+ T++E +
Sbjct: 104 STLLLQVSAQLTLTN-----KKVLYISGEESIKQTKLRAERLQVSGDNLYVYAETNLEAV 158
Query: 281 VEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVT 340
E + + P ++IDSIQTVY V +AG + QV+ECT+AL+R AK NI + + GHVT
Sbjct: 159 QETIDFVKPDFVVIDSIQTVYHPDVTSAAGSVSQVRECTAALMRIAKMQNIAIFIVGHVT 218
Query: 341 KSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSN 400
K G IAGPR+LEH+VD VLY EGE+ +YR+LR+VKNRFGST+E+G+FEM +GL V+N
Sbjct: 219 KEGAIAGPRLLEHMVDTVLYFEGERHHAYRILRAVKNRFGSTNEIGIFEMRDVGLVEVAN 278
Query: 401 PSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRAD 458
PS++FL E+ E +G V M+G+R L+EIQAL R GI ++
Sbjct: 279 PSEVFLEERL---EGASGSTVVASMEGTRPVLVEIQALVSPTMFGNAKRMATGIDYNKVS 335
Query: 459 MIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGE 518
+I++VL K+ GL LQ +L GV L E A DLAVA ++ SS+ + P + FIGE
Sbjct: 336 LIMAVLEKRVGLMLQNQDAYLKAAGGVKLDEPAVDLAVAVSVASSYRDKPTKSTDCFIGE 395
Query: 519 IGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAE 553
+GL GE+R V+R+E+RV AKLG+++ +PK+ E
Sbjct: 396 LGLTGEIRRVARIEQRVQEAAKLGFKRIFIPKNNE 430
>gi|386042569|ref|YP_005961374.1| DNA repair protein RadA [Listeria monocytogenes 10403S]
gi|404409466|ref|YP_006695054.1| DNA repair protein [Listeria monocytogenes SLCC5850]
gi|345535803|gb|AEO05243.1| DNA repair protein RadA [Listeria monocytogenes 10403S]
gi|404229292|emb|CBY50696.1| DNA repair protein [Listeria monocytogenes SLCC5850]
Length = 457
Score = 358 bits (920), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 191/448 (42%), Positives = 276/448 (61%), Gaps = 22/448 (4%)
Query: 109 GKANRTN-WVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEV 167
KA RT +VC CGY +W G C C M T P K +
Sbjct: 2 AKAKRTTKFVCQACGYESAKWMGKCPNCNEWNQMVEALEPSKKSRSAFNHTGEPSKATPI 61
Query: 168 QPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQM 227
+ ++ K+++ +P E+ RVLGGG+VPGS+VL+GGDPG+GKSTLLLQ+
Sbjct: 62 TQI----ASETEKRVETNMP-------ELNRVLGGGVVPGSMVLVGGDPGIGKSTLLLQV 110
Query: 228 AAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPL 287
+A + + V+Y+SGEES++Q RA+R+ ++ + L++Y+ T++E + E + +
Sbjct: 111 SAQLTLTN-----KKVLYISGEESIKQTKLRAERLKVSGDNLYVYAETNLEAVQETIDFV 165
Query: 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAG 347
P ++IDSIQTVY V +AG + QV+ECT+ L+R AK NI + + GHVTK G IAG
Sbjct: 166 KPDFVVIDSIQTVYHPDVTSAAGSVSQVRECTATLMRIAKMQNIAIFIVGHVTKEGAIAG 225
Query: 348 PRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLS 407
PR+LEH+VD VLY EGE+ +YR+LR+VKNRFGST+E+G+FEM +GL V+NPS++FL
Sbjct: 226 PRLLEHMVDTVLYFEGERHHAYRILRAVKNRFGSTNEMGIFEMRDVGLVEVANPSEVFLE 285
Query: 408 EQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLM 465
E+ E +G V M+G+R L+EIQAL R GI ++ +I++VL
Sbjct: 286 ERL---EGASGSTVVASMEGTRPVLVEIQALVSPTMFGNAKRMATGIDYNKVSLIMAVLE 342
Query: 466 KQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGEL 525
K+ GL LQ +L GV L E A DLAVA ++ SS+ + P + FIGE+GL GE+
Sbjct: 343 KRVGLMLQNQDAYLKAAGGVKLDEPAVDLAVAVSVASSYRDKPTRSTDCFIGELGLTGEI 402
Query: 526 RMVSRMEKRVSTVAKLGYRKCIVPKSAE 553
R V+R+E+RV AKLG+++ +PK+ E
Sbjct: 403 RRVARIEQRVQEAAKLGFKRIFIPKNNE 430
>gi|423614627|ref|ZP_17590484.1| DNA repair protein RadA [Bacillus cereus VD107]
gi|401237471|gb|EJR43923.1| DNA repair protein RadA [Bacillus cereus VD107]
Length = 458
Score = 358 bits (920), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 205/477 (42%), Positives = 290/477 (60%), Gaps = 32/477 (6%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQ----KPEEV 167
+T + C +CGY ++ G C C T+ + PVV L + E
Sbjct: 4 KKTKFTCQECGYQSPKYMGKCPGCGQWNTLV------EEMEPVVSSRRLNYANAIQSEVT 57
Query: 168 QPVRLLEV-NKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQ 226
+P RL EV K +++ + E RVLGGG+V GSLVLIGGDPG+GKSTLLLQ
Sbjct: 58 KPRRLTEVETKSEARIETKF-------QEFNRVLGGGIVDGSLVLIGGDPGIGKSTLLLQ 110
Query: 227 MAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQP 286
+++ +AD V+Y+SGEES +QI RADR+ + LF+ + TD++ I ++
Sbjct: 111 ISSQLAD-----SSYDVLYISGEESAKQIKLRADRLHVKGSNLFVVAETDLQRIAAHIEE 165
Query: 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIA 346
++P ++IDSIQT++L V + G + QV+ECT+ L++ AK IP+ + GHVTK G IA
Sbjct: 166 MNPAFVVIDSIQTIHLPEVTSAPGSVAQVRECTAELMKLAKTKGIPIFIVGHVTKEGAIA 225
Query: 347 GPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFL 406
GPR+LEH+VDAVLY EG++ +YR+LR+VKNRFGST+E+G+FEM +LGL V NPS+IFL
Sbjct: 226 GPRMLEHMVDAVLYFEGDRHHTYRILRAVKNRFGSTNEMGIFEMKELGLAEVLNPSEIFL 285
Query: 407 SEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVL 464
E+ +AG V M+G+R L+EIQAL S R GI +R +I++VL
Sbjct: 286 EERPVG---VAGSTVVASMEGTRPVLVEIQALISPTSFGNPRRMATGIDHNRVSLIMAVL 342
Query: 465 MKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGE 524
K+ GL LQ +L V G+ L E A DLAVA +I SSF + A IGE+GL GE
Sbjct: 343 EKRTGLLLQNQDAYLKVAGGLKLDEPAIDLAVALSIASSFRDKSTAPTDAVIGEVGLTGE 402
Query: 525 LRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGF-EQMEFIGCKNLKEVINVVF 580
+R VSR+E+RV AKLG+++ I+P+ K+L + +E +G NL E + +
Sbjct: 403 IRRVSRIEQRVQEAAKLGFQRAIIPR---KNLGGWTIPDGIEVVGVSNLGEALRLTL 456
>gi|363889007|ref|ZP_09316374.1| DNA repair protein RadA [Eubacteriaceae bacterium CM5]
gi|361967152|gb|EHL20013.1| DNA repair protein RadA [Eubacteriaceae bacterium CM5]
Length = 469
Score = 358 bits (920), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 193/467 (41%), Positives = 292/467 (62%), Gaps = 19/467 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T + C +CGY +WWG+C C + GT+K + + + ++ L E+V P++L
Sbjct: 5 KTKYACENCGYETSKWWGICPRCSTAGTLKEEVYTQKSK-TIEKQVELITLGEDVSPIKL 63
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
EV KG + + + + E RVLGGG+V GSLVLIGGDPG+GKST+LLQ+ I+
Sbjct: 64 SEV-KGQEYVRFSTGIK-----EFDRVLGGGIVNGSLVLIGGDPGIGKSTILLQLTNNIS 117
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
D + V+YVS EES+EQI RADR+ +L + + T++E I +++ + P +
Sbjct: 118 DKKN------VLYVSAEESLEQIKLRADRIFEEEADLLIMAQTNLEIIEKQILDIKPDVV 171
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQT+ + G + QVK+ + L++ KK N+ + GHVTK G IAGPRVLE
Sbjct: 172 IIDSIQTISSTTLDSLPGSVSQVKDIANRLMKICKKENVCCFIVGHVTKDGAIAGPRVLE 231
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EGEK++SYR++R+VKNRFGST+ELGVFEM+ GL V NPSK+ LS S+
Sbjct: 232 HLVDTVLYFEGEKYNSYRMIRAVKNRFGSTNELGVFEMTDKGLVEVDNPSKVLLSGSDSN 291
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVS--RHVNGIQASRADMIISVLMKQAGL 470
AG A+ ++G+R L+EIQ+L +S + S R GI +R +M+++VL K AG+
Sbjct: 292 E---AGTAIVSCVEGTRPMLVEIQSLVISTNFPSPRRTGTGIDYNRLNMLLAVLEKHAGI 348
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
+Q +++N+ G+ L E DL V A+ SS+ P+ +A GE+GL GE+R VS
Sbjct: 349 LIQNYDVYVNLTGGIKLNEPFIDLGVIIAVASSYYNIPVKGLLAICGEVGLTGEIRNVSF 408
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVIN 577
++ R++ KLG+ + ++P S K + L + ++ G KN+K+ ++
Sbjct: 409 VQNRINEAEKLGFEEILIPYSNLKDIK-LKNKNIKITGVKNIKQALD 454
>gi|423480227|ref|ZP_17456917.1| DNA repair protein RadA [Bacillus cereus BAG6X1-2]
gi|401149232|gb|EJQ56707.1| DNA repair protein RadA [Bacillus cereus BAG6X1-2]
Length = 458
Score = 358 bits (920), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 205/477 (42%), Positives = 290/477 (60%), Gaps = 32/477 (6%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQ----KPEEV 167
+T + C +CGY ++ G C C T+ + PVV L + E
Sbjct: 4 KKTKFTCQECGYQSPKYMGKCPGCGQWNTLV------EEMEPVVSSRRLNYANAIQSEVT 57
Query: 168 QPVRLLEV-NKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQ 226
+P RL EV K +++ + E RVLGGG+V GSLVLIGGDPG+GKSTLLLQ
Sbjct: 58 KPRRLTEVETKSEARIETKF-------QEFNRVLGGGIVDGSLVLIGGDPGIGKSTLLLQ 110
Query: 227 MAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQP 286
+++ +AD V+Y+SGEES +QI RADR+ + LF+ + TD++ I ++
Sbjct: 111 ISSQLAD-----SSYDVLYISGEESAKQIKLRADRLHVKGSNLFVVAETDLQRIAAHIEE 165
Query: 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIA 346
++P ++IDSIQT++L V + G + QV+ECT+ L++ AK IP+ + GHVTK G IA
Sbjct: 166 MNPAFVVIDSIQTIHLPEVTSAPGSVAQVRECTAELMKLAKTKGIPIFIVGHVTKEGAIA 225
Query: 347 GPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFL 406
GPR+LEH+VDAVLY EG++ +YR+LR+VKNRFGST+E+G+FEM +LGL V NPS+IFL
Sbjct: 226 GPRMLEHMVDAVLYFEGDRHHTYRILRAVKNRFGSTNEMGIFEMKELGLAEVLNPSEIFL 285
Query: 407 SEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVL 464
E+ +AG V M+G+R L+EIQAL S R GI +R +I++VL
Sbjct: 286 EERPVG---VAGSTVVASMEGTRPVLVEIQALISPTSFGNPRRMATGIDHNRVSLIMAVL 342
Query: 465 MKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGE 524
K+ GL LQ +L V G+ L E A DLAVA +I SSF + A IGE+GL GE
Sbjct: 343 EKRTGLLLQNQDAYLKVAGGLKLDEPAIDLAVALSIASSFRDKATAPTDAVIGEVGLTGE 402
Query: 525 LRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGF-EQMEFIGCKNLKEVINVVF 580
+R VSR+E+RV AKLG+++ I+P+ K+L + +E +G NL E + +
Sbjct: 403 IRRVSRIEQRVQEAAKLGFQRAIIPR---KNLGGWTIPDGIEVVGVSNLGEALRLTL 456
>gi|229159256|ref|ZP_04287280.1| DNA repair protein radA [Bacillus cereus R309803]
gi|228624148|gb|EEK80950.1| DNA repair protein radA [Bacillus cereus R309803]
Length = 458
Score = 358 bits (920), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 205/477 (42%), Positives = 291/477 (61%), Gaps = 32/477 (6%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQ----KPEEV 167
+T ++C +CGY ++ G C C T+ + PVV L + E
Sbjct: 4 KKTKFICQECGYQSPKYMGKCPGCGQWNTLV------EEMEPVVSSRRLNYANAIQTEVT 57
Query: 168 QPVRLLEV-NKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQ 226
+P RL EV K +++ + E RVLGGG+V GSLVLIGGDPG+GKSTLLLQ
Sbjct: 58 KPRRLTEVETKSEARIETKF-------QEFNRVLGGGIVDGSLVLIGGDPGIGKSTLLLQ 110
Query: 227 MAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQP 286
+++ +AD V+Y+SGEES +QI RADR+ + LF+ + TD++ I ++
Sbjct: 111 ISSQLAD-----SSYDVLYISGEESAKQIKLRADRLDVKGSNLFVVAETDLQRIAAHIEE 165
Query: 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIA 346
++P ++IDSIQT++L V + G + QV+ECT+ L++ AK IP+ + GHVTK G IA
Sbjct: 166 MNPAFVVIDSIQTIHLPEVTSAPGSVAQVRECTAELMKLAKTKGIPIFIVGHVTKEGAIA 225
Query: 347 GPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFL 406
GPR+LEH+VDAVLY EG++ +YR+LR+VKNRFGST+E+G+FEM +LGL V NPS+IFL
Sbjct: 226 GPRMLEHMVDAVLYFEGDRHHTYRILRAVKNRFGSTNEMGIFEMKELGLAEVLNPSEIFL 285
Query: 407 SEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVL 464
E+ +AG V M+G+R L+EIQAL S R GI +R +I++VL
Sbjct: 286 EERPVG---VAGSTVVASMEGTRPVLVEIQALISPTSFGNPRRMATGIDHNRVSLIMAVL 342
Query: 465 MKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGE 524
K+ GL LQ +L V G+ L E A DLAVA +I SSF + A IGE+GL GE
Sbjct: 343 EKRTGLLLQNQDAYLKVAGGLKLDEPAIDLAVALSIASSFRDKSTAPTDAVIGEVGLTGE 402
Query: 525 LRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGF-EQMEFIGCKNLKEVINVVF 580
+R VSR+E+RV AKLG+++ I+P+ K+L + +E +G NL E + +
Sbjct: 403 IRRVSRIEQRVQEAAKLGFQRAIIPR---KNLGGWTIPDGIEVVGVSNLGEALRLTL 456
>gi|229170934|ref|ZP_04298535.1| DNA repair protein radA [Bacillus cereus MM3]
gi|423405193|ref|ZP_17382366.1| DNA repair protein RadA [Bacillus cereus BAG2X1-2]
gi|423480036|ref|ZP_17456750.1| DNA repair protein RadA [Bacillus cereus BAG6X1-1]
gi|228612474|gb|EEK69695.1| DNA repair protein radA [Bacillus cereus MM3]
gi|401645563|gb|EJS63218.1| DNA repair protein RadA [Bacillus cereus BAG2X1-2]
gi|402424020|gb|EJV56216.1| DNA repair protein RadA [Bacillus cereus BAG6X1-1]
Length = 458
Score = 358 bits (920), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 205/477 (42%), Positives = 290/477 (60%), Gaps = 32/477 (6%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQ----KPEEV 167
+T + C +CGY ++ G C C T+ + PVV L + E
Sbjct: 4 KKTKFTCQECGYQSPKYMGKCPGCGQWNTLV------EEMEPVVSSRRLNYANAIQSEVT 57
Query: 168 QPVRLLEV-NKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQ 226
+P RL EV K +++ + E RVLGGG+V GSLVLIGGDPG+GKSTLLLQ
Sbjct: 58 KPRRLTEVETKSEARIETKF-------QEFNRVLGGGIVDGSLVLIGGDPGIGKSTLLLQ 110
Query: 227 MAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQP 286
+++ +AD V+Y+SGEES +QI RADR+ + LF+ + TD++ I ++
Sbjct: 111 ISSQLAD-----SSYDVLYISGEESAKQIKLRADRLHVKGSNLFVVAETDLQRIAAHIEE 165
Query: 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIA 346
++P ++IDSIQT++L V + G + QV+ECT+ L++ AK IP+ + GHVTK G IA
Sbjct: 166 MNPAFVVIDSIQTIHLPEVTSAPGSVAQVRECTAELMKLAKTKGIPIFIVGHVTKEGAIA 225
Query: 347 GPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFL 406
GPR+LEH+VDAVLY EG++ +YR+LR+VKNRFGST+E+G+FEM +LGL V NPS+IFL
Sbjct: 226 GPRMLEHMVDAVLYFEGDRHHTYRILRAVKNRFGSTNEMGIFEMKELGLAEVLNPSEIFL 285
Query: 407 SEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVL 464
E+ +AG V M+G+R L+EIQAL S R GI +R +I++VL
Sbjct: 286 EERPVG---VAGSTVVASMEGTRPVLVEIQALISPTSFGNPRRMATGIDHNRVSLIMAVL 342
Query: 465 MKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGE 524
K+ GL LQ +L V G+ L E A DLAVA +I SSF + A IGE+GL GE
Sbjct: 343 EKRTGLLLQNQDAYLKVAGGLKLDEPAIDLAVALSIASSFRDKSTTPTDAVIGEVGLTGE 402
Query: 525 LRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGF-EQMEFIGCKNLKEVINVVF 580
+R VSR+E+RV AKLG+++ I+P+ K+L + +E +G NL E + +
Sbjct: 403 IRRVSRIEQRVQEAAKLGFQRAIIPR---KNLGGWTIPDGIEVVGVSNLGEALRLTL 456
>gi|363893756|ref|ZP_09320851.1| DNA repair protein RadA [Eubacteriaceae bacterium ACC19a]
gi|361963558|gb|EHL16630.1| DNA repair protein RadA [Eubacteriaceae bacterium ACC19a]
Length = 469
Score = 358 bits (920), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 193/467 (41%), Positives = 292/467 (62%), Gaps = 19/467 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T + C +CGY +WWG+C C + GT+K + + + ++ L E+V P++L
Sbjct: 5 KTKYACENCGYETSKWWGICPRCSTAGTLKEEVYTQKSK-TIEKQVELITLGEDVSPIKL 63
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
EV KG + + + + E RVLGGG+V GSLVLIGGDPG+GKST+LLQ+ I+
Sbjct: 64 SEV-KGQEYVRFSTGIK-----EFDRVLGGGIVNGSLVLIGGDPGIGKSTILLQLTNNIS 117
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
D + V+YVS EES+EQI RADR+ +L + + T++E I +++ + P +
Sbjct: 118 DKKN------VLYVSAEESLEQIKLRADRIFEEEADLLIIAQTNLEIIEKQILDIKPDVV 171
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQT+ + G + QVK+ + L++ KK N+ + GHVTK G IAGPRVLE
Sbjct: 172 IIDSIQTISSTTLDSLPGSVSQVKDIANRLMKICKKENVCCFIVGHVTKDGAIAGPRVLE 231
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EGEK++SYR++R+VKNRFGST+ELGVFEM+ GL V NPSK+ LS S+
Sbjct: 232 HLVDTVLYFEGEKYNSYRMIRAVKNRFGSTNELGVFEMTDKGLVEVDNPSKVLLSGSDSN 291
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVS--RHVNGIQASRADMIISVLMKQAGL 470
AG A+ ++G+R L+EIQ+L +S + S R GI +R +M+++VL K AG+
Sbjct: 292 E---AGTAIVSCVEGTRPMLVEIQSLVISTNFPSPRRTGTGIDYNRLNMLLAVLEKHAGI 348
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
+Q +++N+ G+ L E DL V A+ SS+ P+ +A GE+GL GE+R VS
Sbjct: 349 LIQNYDVYVNLTGGIKLNEPFIDLGVIIAVASSYYNIPVKGLLAICGEVGLTGEIRNVSF 408
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVIN 577
++ R++ KLG+ + ++P S K + L + ++ G KN+K+ ++
Sbjct: 409 VQNRINEAEKLGFEEILIPYSNLKDIK-LKNKNIKITGVKNIKQALD 454
>gi|443635018|ref|ZP_21119189.1| DNA repair protein RadA [Bacillus subtilis subsp. inaquosorum KCTC
13429]
gi|443345209|gb|ELS59275.1| DNA repair protein RadA [Bacillus subtilis subsp. inaquosorum KCTC
13429]
Length = 458
Score = 358 bits (920), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 200/470 (42%), Positives = 280/470 (59%), Gaps = 26/470 (5%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKR---YSAGESDEGPVVQRTWLPQKPEEVQ 168
++ ++C CGY +W G C C + TM A + QKP +
Sbjct: 4 TKSKFICQSCGYESPKWMGKCPGCGAWNTMVEEMIKKAPANRRAAFSHSVQTVQKPSPIT 63
Query: 169 PVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMA 228
+ E + QL E RVLGGG+V GSLVLIGGDPG+GKSTLLLQ++
Sbjct: 64 SIETSEEPRVKTQL-----------GEFNRVLGGGVVKGSLVLIGGDPGIGKSTLLLQVS 112
Query: 229 AIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLS 288
A ++D + V+Y+SGEESV+Q RADR+ I L + S TD+E I +Q ++
Sbjct: 113 AQLSDSSN-----SVLYISGEESVKQTKLRADRLGINNPSLHVLSETDMEYISSAIQEMN 167
Query: 289 PRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGP 348
P +++DSIQTVY + + G + QV+ECT+ L++ AK IP+ + GHVTK G IAGP
Sbjct: 168 PAFVVVDSIQTVYQSDITSAPGSVSQVRECTAELMKIAKTKGIPIFIVGHVTKEGSIAGP 227
Query: 349 RVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSE 408
R+LEH+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM + GL V NPS+IFL E
Sbjct: 228 RLLEHMVDTVLYFEGERHHTFRILRAVKNRFGSTNEMGIFEMREEGLTEVLNPSEIFLEE 287
Query: 409 QHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVLMK 466
+ + S AG ++ M+G+R L+EIQAL S R GI +R ++++VL K
Sbjct: 288 RSAGS---AGSSITASMEGTRPILVEIQALISPTSFGNPRRMATGIDHNRVSLLMAVLEK 344
Query: 467 QAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELR 526
+ GL LQ +L V GV L E A DLA+A +I SSF + P FIGE+GL GE+R
Sbjct: 345 RVGLLLQNQDAYLKVAGGVKLDEPAIDLAIAISIASSFRDTPPNPADCFIGEVGLTGEVR 404
Query: 527 MVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVI 576
VSR+E+RV AKLG+++ I+P + + +E IG N+ E +
Sbjct: 405 RVSRIEQRVKEAAKLGFKRMIIPAANLDGWTKP--KGIEVIGVANVAEAL 452
>gi|409387809|ref|ZP_11239953.1| DNA repair protein RadA [Lactococcus raffinolactis 4877]
gi|399205157|emb|CCK20868.1| DNA repair protein RadA [Lactococcus raffinolactis 4877]
Length = 453
Score = 358 bits (919), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 207/471 (43%), Positives = 290/471 (61%), Gaps = 26/471 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
++ +VC CGY ++ G C C G + E E V+ + E+ +PV+L
Sbjct: 5 KSKFVCQSCGYQSPKYLGRCPNC---GAWNSFV--EEVEAKEVKNARVTLTGEKTRPVKL 59
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
EV + LD L+ + E RVLGGG+VPGSL+LIGGDPG+GKST+LLQ++ +A
Sbjct: 60 GEV----ESLDTPRVLTDM--GEFNRVLGGGVVPGSLILIGGDPGIGKSTILLQVSVQLA 113
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
++ V+YVSGEES +QI RA+R+ + +LY+ ++++I +++ L P L
Sbjct: 114 NI------GRVLYVSGEESAQQIKMRAERLGDLDSDFYLYAENNMQNIRTEIEKLQPDFL 167
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
+IDSIQTV + G G + QV+E T+ LL+ AK NI + GHVTK G +AGPR+LE
Sbjct: 168 VIDSIQTVMSPEITGVQGSVSQVREVTAELLQIAKTNNIATFIVGHVTKEGSLAGPRMLE 227
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V+NPS+IFL E+
Sbjct: 228 HMVDTVLYFEGERQHTFRILRAVKNRFGSTNEIGIFEMQSQGLVEVTNPSEIFLEERL-- 285
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
E G A+ V M+G+R L+EIQAL R +G+ +R +I++VL K+A L
Sbjct: 286 -EGATGSAIVVSMEGTRPILVEIQALVTPTIFGNARRTTSGLDFNRVSLIMAVLEKRANL 344
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ +L GV L E A DLA+A AI SS+ E P +AFIGEIGL GE+R V+R
Sbjct: 345 LLQNQDAYLKSAGGVKLDEPAIDLAIAVAIASSYKEKPTAPDVAFIGEIGLTGEIRRVNR 404
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGF-EQMEFIGCKNLKEVINVVF 580
+E R++ AKLG++K PK+ SLA L +E IG L EV+ VF
Sbjct: 405 IESRINEAAKLGFKKLYAPKN---SLAGLEIPPSIEVIGVTTLAEVLQKVF 452
>gi|206978360|ref|ZP_03239233.1| DNA repair protein RadA [Bacillus cereus H3081.97]
gi|206743421|gb|EDZ54855.1| DNA repair protein RadA [Bacillus cereus H3081.97]
Length = 458
Score = 358 bits (919), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 206/477 (43%), Positives = 290/477 (60%), Gaps = 32/477 (6%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQ----KPEEV 167
+T + C +CGY ++ G C C T+ + PVV L + E
Sbjct: 4 KKTKFTCQECGYQSPKYMGKCPGCGQWNTLV------EEMEPVVSSRRLNYANAIQTEVT 57
Query: 168 QPVRLLEV-NKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQ 226
+P RL EV K +++ + E RVLGGG+V GSLVLIGGDPG+GKSTLLLQ
Sbjct: 58 KPRRLTEVETKSEARIETKF-------QEFNRVLGGGIVDGSLVLIGGDPGIGKSTLLLQ 110
Query: 227 MAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQP 286
+++ +AD V+Y+SGEES +QI RADR+ + LF+ S TD++ I ++
Sbjct: 111 ISSQLAD-----SSYDVLYISGEESAKQIKLRADRLHVNGSNLFVVSETDLQRIATHIEE 165
Query: 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIA 346
++P ++IDSIQT++L V + G + QV+ECT+ L++ AK IP+ + GHVTK G IA
Sbjct: 166 VNPAFVVIDSIQTIHLPEVTSAPGSVAQVRECTAELMKLAKTKGIPIFIVGHVTKEGAIA 225
Query: 347 GPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFL 406
GPR+LEH+VDAVLY EG++ +YR+LR+VKNRFGST+E+G+FEM +LGL V NPS+IFL
Sbjct: 226 GPRMLEHMVDAVLYFEGDRHHTYRILRAVKNRFGSTNEMGIFEMKELGLAEVLNPSEIFL 285
Query: 407 SEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVL 464
E+ +AG V M+G+R L+EIQAL S R GI +R +I++VL
Sbjct: 286 EERPVG---VAGSTVVASMEGTRPVLVEIQALISPTSFGNPRRMATGIDHNRVSLIMAVL 342
Query: 465 MKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGE 524
K+ GL LQ +L V G+ L E A DLAVA +I SSF + A IGE+GL GE
Sbjct: 343 EKRTGLLLQNQDAYLKVAGGLKLDEPAIDLAVALSIASSFRDKSTVPTDAVIGEVGLTGE 402
Query: 525 LRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGF-EQMEFIGCKNLKEVINVVF 580
+R VSR+E+RV AKLG+++ I+P+ K+L + +E +G NL E + +
Sbjct: 403 IRRVSRIEQRVQEAAKLGFQRAIIPR---KNLGGWTIPDGIEVVGVSNLGEALRLTL 456
>gi|321313757|ref|YP_004206044.1| DNA repair protein RadA [Bacillus subtilis BSn5]
gi|320020031|gb|ADV95017.1| DNA repair protein RadA [Bacillus subtilis BSn5]
Length = 458
Score = 358 bits (919), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 200/470 (42%), Positives = 280/470 (59%), Gaps = 26/470 (5%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKR---YSAGESDEGPVVQRTWLPQKPEEVQ 168
++ ++C CGY +W G C C + TM A + QKP +
Sbjct: 4 TKSKFICQSCGYESPKWMGKCPGCGAWNTMVEEMIKKAPANRRAAFSHSVQTVQKPSPIT 63
Query: 169 PVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMA 228
+ E + QL E RVLGGG+V GSLVLIGGDPG+GKSTLLLQ++
Sbjct: 64 SIETSEEPRVKTQL-----------GEFNRVLGGGVVKGSLVLIGGDPGIGKSTLLLQVS 112
Query: 229 AIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLS 288
A ++ G + V+Y+SGEESV+Q RADR+ I L + S TD+E I +Q ++
Sbjct: 113 AQLS-----GSSNSVLYISGEESVKQTKLRADRLGINNPSLHVLSETDMEYISSAIQEMN 167
Query: 289 PRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGP 348
P +++DSIQTVY + + G + QV+ECT+ L++ AK IP+ + GHVTK G IAGP
Sbjct: 168 PSFVVVDSIQTVYQSDITSAPGSVSQVRECTAELMKIAKTKGIPIFIVGHVTKEGSIAGP 227
Query: 349 RVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSE 408
R+LEH+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM + GL V NPS+IFL E
Sbjct: 228 RLLEHMVDTVLYFEGERHHTFRILRAVKNRFGSTNEMGIFEMREEGLTEVLNPSEIFLEE 287
Query: 409 QHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVLMK 466
+ + S AG ++ M+G+R L+EIQAL S R GI +R ++++VL K
Sbjct: 288 RSAGS---AGSSITASMEGTRPILVEIQALISPTSFGNPRRMATGIDHNRVSLLMAVLEK 344
Query: 467 QAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELR 526
+ GL LQ +L V GV L E A DLA+A +I SSF + P FIGE+GL GE+R
Sbjct: 345 RVGLLLQNQDAYLKVAGGVKLDEPAIDLAIAISIASSFRDTPPNPADCFIGEVGLTGEVR 404
Query: 527 MVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVI 576
VSR+E+RV AKLG+++ I+P + + +E IG N+ E +
Sbjct: 405 RVSRIEQRVKEAAKLGFKRMIIPAANLDGWTKP--KGIEVIGVANVAEAL 452
>gi|75760631|ref|ZP_00740660.1| DNA repair protein RadA [Bacillus thuringiensis serovar israelensis
ATCC 35646]
gi|218895218|ref|YP_002443629.1| DNA repair protein RadA [Bacillus cereus G9842]
gi|228898836|ref|ZP_04063118.1| DNA repair protein radA [Bacillus thuringiensis IBL 4222]
gi|228905880|ref|ZP_04069777.1| DNA repair protein radA [Bacillus thuringiensis IBL 200]
gi|228937385|ref|ZP_04100031.1| DNA repair protein radA [Bacillus thuringiensis serovar berliner
ATCC 10792]
gi|228963183|ref|ZP_04124352.1| DNA repair protein radA [Bacillus thuringiensis serovar sotto str.
T04001]
gi|228970271|ref|ZP_04130930.1| DNA repair protein radA [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228976841|ref|ZP_04137253.1| DNA repair protein radA [Bacillus thuringiensis Bt407]
gi|229094805|ref|ZP_04225810.1| DNA repair protein radA [Bacillus cereus Rock3-29]
gi|229100881|ref|ZP_04231686.1| DNA repair protein radA [Bacillus cereus Rock3-28]
gi|229113759|ref|ZP_04243194.1| DNA repair protein radA [Bacillus cereus Rock1-3]
gi|384184167|ref|YP_005570063.1| DNA repair protein RadA [Bacillus thuringiensis serovar chinensis
CT-43]
gi|402562826|ref|YP_006605550.1| DNA repair protein RadA [Bacillus thuringiensis HD-771]
gi|407708031|ref|YP_006831616.1| glycoprotease family protein [Bacillus thuringiensis MC28]
gi|410672454|ref|YP_006924825.1| DNA repair protein RadA [Bacillus thuringiensis Bt407]
gi|423364493|ref|ZP_17341983.1| DNA repair protein RadA [Bacillus cereus VD022]
gi|423381870|ref|ZP_17359153.1| DNA repair protein RadA [Bacillus cereus BAG1O-2]
gi|423387431|ref|ZP_17364685.1| DNA repair protein RadA [Bacillus cereus BAG1X1-2]
gi|423439739|ref|ZP_17416645.1| DNA repair protein RadA [Bacillus cereus BAG4X2-1]
gi|423450104|ref|ZP_17426982.1| DNA repair protein RadA [Bacillus cereus BAG5O-1]
gi|423467996|ref|ZP_17444764.1| DNA repair protein RadA [Bacillus cereus BAG6O-1]
gi|423526619|ref|ZP_17503064.1| DNA repair protein RadA [Bacillus cereus HuB1-1]
gi|423537396|ref|ZP_17513814.1| DNA repair protein RadA [Bacillus cereus HuB2-9]
gi|423543124|ref|ZP_17519512.1| DNA repair protein RadA [Bacillus cereus HuB4-10]
gi|423543570|ref|ZP_17519928.1| DNA repair protein RadA [Bacillus cereus HuB5-5]
gi|423565559|ref|ZP_17541835.1| DNA repair protein RadA [Bacillus cereus MSX-A1]
gi|423620309|ref|ZP_17596140.1| DNA repair protein RadA [Bacillus cereus VD115]
gi|423626975|ref|ZP_17602750.1| DNA repair protein RadA [Bacillus cereus VD148]
gi|434378725|ref|YP_006613369.1| DNA repair protein RadA [Bacillus thuringiensis HD-789]
gi|452196460|ref|YP_007476541.1| DNA repair protein RadA [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
gi|74491874|gb|EAO55061.1| DNA repair protein RadA [Bacillus thuringiensis serovar israelensis
ATCC 35646]
gi|218540953|gb|ACK93347.1| DNA repair protein RadA [Bacillus cereus G9842]
gi|228669630|gb|EEL25037.1| DNA repair protein radA [Bacillus cereus Rock1-3]
gi|228682535|gb|EEL36607.1| DNA repair protein radA [Bacillus cereus Rock3-28]
gi|228688548|gb|EEL42421.1| DNA repair protein radA [Bacillus cereus Rock3-29]
gi|228782811|gb|EEM30977.1| DNA repair protein radA [Bacillus thuringiensis Bt407]
gi|228789380|gb|EEM37300.1| DNA repair protein radA [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228796441|gb|EEM43880.1| DNA repair protein radA [Bacillus thuringiensis serovar sotto str.
T04001]
gi|228822218|gb|EEM68200.1| DNA repair protein radA [Bacillus thuringiensis serovar berliner
ATCC 10792]
gi|228853695|gb|EEM98455.1| DNA repair protein radA [Bacillus thuringiensis IBL 200]
gi|228860736|gb|EEN05114.1| DNA repair protein radA [Bacillus thuringiensis IBL 4222]
gi|326937876|gb|AEA13772.1| DNA repair protein RadA [Bacillus thuringiensis serovar chinensis
CT-43]
gi|401072912|gb|EJP81366.1| DNA repair protein RadA [Bacillus cereus VD022]
gi|401126727|gb|EJQ34461.1| DNA repair protein RadA [Bacillus cereus BAG5O-1]
gi|401166824|gb|EJQ74124.1| DNA repair protein RadA [Bacillus cereus HuB4-10]
gi|401187735|gb|EJQ94807.1| DNA repair protein RadA [Bacillus cereus HuB5-5]
gi|401193761|gb|EJR00764.1| DNA repair protein RadA [Bacillus cereus MSX-A1]
gi|401248869|gb|EJR55190.1| DNA repair protein RadA [Bacillus cereus VD115]
gi|401250170|gb|EJR56474.1| DNA repair protein RadA [Bacillus cereus VD148]
gi|401628496|gb|EJS46337.1| DNA repair protein RadA [Bacillus cereus BAG1O-2]
gi|401629014|gb|EJS46842.1| DNA repair protein RadA [Bacillus cereus BAG1X1-2]
gi|401791478|gb|AFQ17517.1| DNA repair protein RadA [Bacillus thuringiensis HD-771]
gi|401877282|gb|AFQ29449.1| DNA repair protein RadA [Bacillus thuringiensis HD-789]
gi|402411863|gb|EJV44226.1| DNA repair protein RadA [Bacillus cereus BAG6O-1]
gi|402421920|gb|EJV54164.1| DNA repair protein RadA [Bacillus cereus BAG4X2-1]
gi|402455659|gb|EJV87440.1| DNA repair protein RadA [Bacillus cereus HuB1-1]
gi|402459102|gb|EJV90840.1| DNA repair protein RadA [Bacillus cereus HuB2-9]
gi|407385716|gb|AFU16217.1| DNA repair protein RadA [Bacillus thuringiensis MC28]
gi|409171583|gb|AFV15888.1| DNA repair protein RadA [Bacillus thuringiensis Bt407]
gi|452101853|gb|AGF98792.1| DNA repair protein RadA [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
Length = 458
Score = 358 bits (918), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 205/477 (42%), Positives = 290/477 (60%), Gaps = 32/477 (6%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQ----KPEEV 167
+T ++C +CGY ++ G C C T+ + PVV L + E
Sbjct: 4 KKTKFICQECGYQSPKYMGKCPGCGQWNTLV------EEMEPVVSSRRLNYANAIQTEVT 57
Query: 168 QPVRLLEV-NKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQ 226
+P RL EV K +++ E RVLGGG+V GSLVLIGGDPG+GKSTLLLQ
Sbjct: 58 KPRRLTEVETKSEARIETEF-------QEFNRVLGGGIVDGSLVLIGGDPGIGKSTLLLQ 110
Query: 227 MAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQP 286
+++ +AD V+Y+SGEES +QI RADR+ + LF+ + TD++ I ++
Sbjct: 111 ISSQLAD-----SSYDVLYISGEESAKQIKLRADRLHVKGSNLFVVAETDLQRIAAHIEE 165
Query: 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIA 346
++P ++IDSIQT++L V + G + QV+ECT+ L++ AK IP+ + GHVTK G IA
Sbjct: 166 MNPAFVVIDSIQTIHLPEVTSAPGSVAQVRECTAELMKLAKTKGIPIFIVGHVTKEGAIA 225
Query: 347 GPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFL 406
GPR+LEH+VDAVLY EG++ +YR+LR+VKNRFGST+E+G+FEM +LGL V NPS+IFL
Sbjct: 226 GPRMLEHMVDAVLYFEGDRHHTYRILRAVKNRFGSTNEMGIFEMKELGLAEVLNPSEIFL 285
Query: 407 SEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVL 464
E+ +AG V M+G+R L+EIQAL S R GI +R +I++VL
Sbjct: 286 EERPVG---VAGSTVVASMEGTRPVLVEIQALISPTSFGNPRRMATGIDHNRVSLIMAVL 342
Query: 465 MKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGE 524
K+ GL LQ +L V G+ L E A DLAVA +I SSF + A IGE+GL GE
Sbjct: 343 EKRTGLLLQNQDAYLKVAGGLKLDEPAIDLAVALSIASSFRDKSTAPTDAVIGEVGLTGE 402
Query: 525 LRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGF-EQMEFIGCKNLKEVINVVF 580
+R VSR+E+RV AKLG+++ I+P+ K+L + +E +G NL E + +
Sbjct: 403 IRRVSRIEQRVQEAAKLGFQRVIIPR---KNLGGWTIPDGIEVVGVSNLGEALRLTL 456
>gi|404450361|ref|ZP_11015345.1| DNA repair protein RadA [Indibacter alkaliphilus LW1]
gi|403764097|gb|EJZ25013.1| DNA repair protein RadA [Indibacter alkaliphilus LW1]
Length = 460
Score = 358 bits (918), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 193/472 (40%), Positives = 295/472 (62%), Gaps = 21/472 (4%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVR 171
+T++ C +CG +W G C AC G Y + V TW + +E + +
Sbjct: 4 TKTSFFCQNCGAQSPKWIGKCPAC---GEWNTYVEEVIHKEEKVLGTWKVGQGKERKSTK 60
Query: 172 LLEVNKGMKQLDW-RIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAI 230
K + ++D+ P +G E+ RVLGGG+VPGSLVLIGG+PG+GKSTL+LQ+A
Sbjct: 61 ----PKKLSEIDFSESPRTGTNDTELDRVLGGGIVPGSLVLIGGEPGIGKSTLMLQIALS 116
Query: 231 IADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPR 290
++ + V+YVSGEES QI RA+RM + ++ ++ S T+ + + E+V+ L P
Sbjct: 117 LSALK-------VLYVSGEESESQIKMRAERMDVFSDNCYILSETNTQKVFEQVEILQPE 169
Query: 291 ALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRV 350
L+IDSIQT++ V +AG + QV+ECT+ L+RFAK+T PV L GH+TK G IAGP+V
Sbjct: 170 LLVIDSIQTLHSSHVESAAGSVSQVRECTAELMRFAKETATPVFLIGHITKDGSIAGPKV 229
Query: 351 LEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQH 410
LEH+VD VL EG++ SYR+LR+ KNRFGST ELG++EM GL+ V+NPS+I L+++
Sbjct: 230 LEHMVDTVLQFEGDRHLSYRILRTSKNRFGSTHELGIYEMRATGLRQVANPSEILLTQRE 289
Query: 411 SDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMKQA 468
E L G+A+ +M+G+R LIEIQ+L + T R G R +M+++VL K+
Sbjct: 290 ---EALNGVAIGAMMEGNRPLLIEIQSLVSPATYGTPQRSSTGFDGKRLNMLLAVLEKRG 346
Query: 469 GLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMV 528
G++L + +FLNV G+ + + A DL V A++ SS+ + +P+ F GE+GLGGE+R V
Sbjct: 347 GMRLGQQDVFLNVAGGLKVDDPALDLTVCASLLSSYEDLAVPDDSCFAGEVGLGGEVRAV 406
Query: 529 SRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
++E R++ KLG+++ V K A K L + +++ + L+E+ +F
Sbjct: 407 HKIENRIAEAEKLGFKRIFVSKYAVKGLDLKKY-KIKVVALSKLEEMYQQLF 457
>gi|423399356|ref|ZP_17376554.1| DNA repair protein RadA [Bacillus cereus BAG2X1-1]
gi|423409868|ref|ZP_17387017.1| DNA repair protein RadA [Bacillus cereus BAG2X1-3]
gi|401644456|gb|EJS62146.1| DNA repair protein RadA [Bacillus cereus BAG2X1-1]
gi|401652408|gb|EJS69965.1| DNA repair protein RadA [Bacillus cereus BAG2X1-3]
Length = 458
Score = 358 bits (918), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 206/478 (43%), Positives = 292/478 (61%), Gaps = 34/478 (7%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQ----KPEEV 167
+T + C +CGY ++ G C C T+ + PVV L + E
Sbjct: 4 KKTKFTCQECGYQSPKYMGKCPGCGQWNTLV------EEMEPVVSSRRLNYANAIQSEVT 57
Query: 168 QPVRLLEV-NKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQ 226
+P RL EV K +++ + E RVLGGG+V GSLVLIGGDPG+GKSTLLLQ
Sbjct: 58 KPRRLTEVETKSEARIETKF-------QEFNRVLGGGIVDGSLVLIGGDPGIGKSTLLLQ 110
Query: 227 MAAIIADV-HDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQ 285
+++ +AD +D V+Y+SGEES +QI RADR+ + LF+ + TD++ I ++
Sbjct: 111 ISSQLADASYD------VLYISGEESAKQIKLRADRLDVKGSNLFVVAETDLQRIAAHIE 164
Query: 286 PLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDI 345
++P ++IDSIQT++L V + G + QV+ECT+ L++ AK IP+ + GHVTK G I
Sbjct: 165 EMNPAFVVIDSIQTIHLPEVTSAPGSVAQVRECTAELMKLAKTKGIPIFIVGHVTKEGAI 224
Query: 346 AGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIF 405
AGPR+LEH+VDAVLY EG++ +YR+LR+VKNRFGST+E+G+FEM +LGL V NPS+IF
Sbjct: 225 AGPRMLEHMVDAVLYFEGDRHHTYRILRAVKNRFGSTNEMGIFEMKELGLAEVLNPSEIF 284
Query: 406 LSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISV 463
L E+ +AG V M+G+R L+EIQAL S R GI +R +I++V
Sbjct: 285 LEERPVG---VAGSTVVASMEGTRPVLVEIQALISPTSFGNPRRMATGIDHNRVSLIMAV 341
Query: 464 LMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGG 523
L K+ GL LQ +L V G+ L E A DLAVA +I SSF + A IGE+GL G
Sbjct: 342 LEKRTGLLLQNQDAYLKVAGGLKLDEPAIDLAVALSIASSFRDKSTAPTDAVIGEVGLTG 401
Query: 524 ELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGF-EQMEFIGCKNLKEVINVVF 580
E+R VSR+E+RV AKLG+++ I+P+ K+L + +E +G NL E + +
Sbjct: 402 EIRRVSRIEQRVQEAAKLGFQRAIIPR---KNLGGWTIPDGIEVVGVSNLGEALRLTL 456
>gi|296333084|ref|ZP_06875538.1| DNA repair protein RadA [Bacillus subtilis subsp. spizizenii ATCC
6633]
gi|305672786|ref|YP_003864457.1| DNA repair protein RadA [Bacillus subtilis subsp. spizizenii str.
W23]
gi|296149700|gb|EFG90595.1| DNA repair protein RadA [Bacillus subtilis subsp. spizizenii ATCC
6633]
gi|305411029|gb|ADM36147.1| DNA repair protein RadA [Bacillus subtilis subsp. spizizenii str.
W23]
Length = 458
Score = 358 bits (918), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 200/470 (42%), Positives = 280/470 (59%), Gaps = 26/470 (5%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKR---YSAGESDEGPVVQRTWLPQKPEEVQ 168
++ ++C CGY +W G C C + TM A + QKP +
Sbjct: 4 TKSKFICQSCGYESPKWMGKCPGCGAWNTMVEEMIKKAPANRRAAFSHSVQTVQKPSPIT 63
Query: 169 PVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMA 228
+ E + QL E RVLGGG+V GSLVLIGGDPG+GKSTLLLQ++
Sbjct: 64 SIETSEEPRVKTQL-----------GEFNRVLGGGVVKGSLVLIGGDPGIGKSTLLLQVS 112
Query: 229 AIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLS 288
A ++D + V+Y+SGEESV+Q RADR+ I + L + S TD+E I +Q ++
Sbjct: 113 AQLSDSSN-----SVLYISGEESVKQTKLRADRLGINSPSLHVLSETDMEYISSAIQEMN 167
Query: 289 PRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGP 348
P +++DSIQTVY + + G + QV+ECT+ L++ AK IP+ + GHVTK G IAGP
Sbjct: 168 PAFVVVDSIQTVYQSDITSAPGSVSQVRECTAELMKIAKTKGIPIFIVGHVTKEGSIAGP 227
Query: 349 RVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSE 408
R+LEH+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM + GL V NPS+IFL E
Sbjct: 228 RLLEHMVDTVLYFEGERHHTFRILRAVKNRFGSTNEMGIFEMREEGLTEVLNPSEIFLEE 287
Query: 409 QHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVLMK 466
+ + S AG ++ M+G+R L+EIQAL S R GI +R ++++VL K
Sbjct: 288 RSAGS---AGSSITASMEGTRPILVEIQALISPTSFGNPRRMATGIDHNRVSLLMAVLEK 344
Query: 467 QAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELR 526
+ GL LQ +L V GV L E A DLA+A +I SSF + P FIGE+GL GE+R
Sbjct: 345 RVGLLLQNQDAYLKVAGGVKLDEPAIDLAIAISIASSFRDTPPNPADCFIGEVGLTGEVR 404
Query: 527 MVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVI 576
VSR+E+RV AKLG+ + I+P + + +E IG N+ E +
Sbjct: 405 RVSRIEQRVKEAAKLGFTRMIIPAANLDGWTKP--KGIEVIGVANVAEAL 452
>gi|381208305|ref|ZP_09915376.1| DNA repair protein RadA [Lentibacillus sp. Grbi]
Length = 457
Score = 357 bits (917), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 196/472 (41%), Positives = 286/472 (60%), Gaps = 31/472 (6%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEG--PVVQRTWLPQKPEEVQPV 170
+ +VC +CGY +W G C C + T+ S G + + +PE + +
Sbjct: 5 KMKYVCQECGYESAKWMGKCPGCNNWNTLVEEIEASSAGGRHTMSRDGRSASQPESITSI 64
Query: 171 RLLE---VNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQM 227
+ + GMK+ + RVLGGG+VPGSL LIGGDPG+GKSTLLLQ+
Sbjct: 65 ETKKEPRITTGMKEFN--------------RVLGGGVVPGSLALIGGDPGIGKSTLLLQV 110
Query: 228 AAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPL 287
++ +A+ + PV+Y+SGEES+ Q RADR+ ++++ L+ + T++ DI+ +++ +
Sbjct: 111 SSQLAE-----KQLPVLYISGEESIRQTKLRADRLGVSSDLLYAMAETNLLDIINQIEQI 165
Query: 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAG 347
P ++IDSIQT+Y V + G + QV+E T L+R AK IP+ + GHVTK G IAG
Sbjct: 166 KPAFVVIDSIQTIYREEVTSAPGSVSQVRESTGELMRVAKSNGIPIFIVGHVTKEGAIAG 225
Query: 348 PRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLS 407
PR+LEH+VDAVLY EGE+ +YR+LRSVKNRFGST E+G+FEM + GL+ V NPS+IFL
Sbjct: 226 PRMLEHMVDAVLYFEGERHHTYRILRSVKNRFGSTHEMGIFEMKEEGLREVMNPSEIFLE 285
Query: 408 EQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVLM 465
E+ S+ AG V M+G+R L+EIQAL S R GI +R ++++VL
Sbjct: 286 ER---SQGAAGSTVVASMEGTRPVLVEIQALISPTSFGNPRRMATGIDTNRVPLLMAVLE 342
Query: 466 KQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGEL 525
K+ GL LQ ++ V GV L E A DLAVA +I SSF P IGE+GL GE+
Sbjct: 343 KRVGLMLQNQDAYIKVAGGVKLDEPAIDLAVAVSIASSFRNHPTRPEDIVIGEVGLTGEI 402
Query: 526 RMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVIN 577
R V+R+E+RV AKLG+++ I P+ + A E ++ +G ++E ++
Sbjct: 403 RRVARIEQRVQEAAKLGFKRVICPQKNLEGWAPP--ESIQIVGVNTVQEALD 452
>gi|430755611|ref|YP_007211172.1| DNA repair - like proteinRadA [Bacillus subtilis subsp. subtilis
str. BSP1]
gi|430020131|gb|AGA20737.1| DNA repair - like proteinRadA [Bacillus subtilis subsp. subtilis
str. BSP1]
Length = 458
Score = 357 bits (917), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 200/470 (42%), Positives = 280/470 (59%), Gaps = 26/470 (5%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKR---YSAGESDEGPVVQRTWLPQKPEEVQ 168
++ ++C CGY +W G C C + TM A + QKP +
Sbjct: 4 TKSKFICQSCGYESPKWMGKCPGCGAWNTMVEEMIKKAPANRRAAFSHSVQTVQKPSPIT 63
Query: 169 PVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMA 228
+ E + QL E RVLGGG+V GSLVLIGGDPG+GKSTLLLQ++
Sbjct: 64 SIETSEEPRVKTQL-----------GEFNRVLGGGVVKGSLVLIGGDPGIGKSTLLLQVS 112
Query: 229 AIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLS 288
A ++ G + V+Y+SGEESV+Q RADR+ I L + S TD+E I +Q ++
Sbjct: 113 AQLS-----GSSNSVLYISGEESVKQTKLRADRLGINNPSLHVLSETDMEYISSAIQEMN 167
Query: 289 PRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGP 348
P +++DSIQTVY + + G + QV+ECT+ L++ AK IP+ + GHVTK G IAGP
Sbjct: 168 PAFVVVDSIQTVYQSDITSAPGSVSQVRECTAELMKIAKTKGIPIFIVGHVTKEGSIAGP 227
Query: 349 RVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSE 408
R+LEH+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM + GL V NPS+IFL E
Sbjct: 228 RLLEHMVDTVLYFEGERHHTFRILRAVKNRFGSTNEMGIFEMREEGLTEVLNPSEIFLEE 287
Query: 409 QHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVLMK 466
+ + S AG ++ M+G+R L+EIQAL S R GI +R ++++VL K
Sbjct: 288 RSAGS---AGSSITASMEGTRPILVEIQALISPTSFGNPRRMATGIDHNRVSLLMAVLEK 344
Query: 467 QAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELR 526
+ GL LQ +L V GV L E A DLA+A +I SSF + P FIGE+GL GE+R
Sbjct: 345 RVGLLLQNQDAYLKVAGGVKLDEPAIDLAIAISIASSFRDTPPNPADCFIGEVGLTGEVR 404
Query: 527 MVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVI 576
VSR+E+RV AKLG+++ I+P + + +E IG N+ E +
Sbjct: 405 RVSRIEQRVKEAAKLGFKRMIIPAANLDGWTKP--KGIEVIGVANVAEAL 452
>gi|398303899|ref|ZP_10507485.1| DNA repair protein RadA [Bacillus vallismortis DV1-F-3]
Length = 458
Score = 357 bits (917), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 198/470 (42%), Positives = 281/470 (59%), Gaps = 26/470 (5%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKR---YSAGESDEGPVVQRTWLPQKPEEVQ 168
++ ++C CGY +W G C C + TM A + QKP +
Sbjct: 4 TKSKFICQSCGYESPKWMGKCPGCGAWNTMVEEMMKKAPANRRAAFSHSVQTVQKPSPIT 63
Query: 169 PVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMA 228
+ E + QL E RVLGGG++ GSLVLIGGDPG+GKSTLLLQ++
Sbjct: 64 TIETSEEPRVKTQL-----------GEFNRVLGGGVIKGSLVLIGGDPGIGKSTLLLQVS 112
Query: 229 AIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLS 288
A ++D + V+Y+SGEESV+Q RADR+ I L + S TD+E I ++ ++
Sbjct: 113 AQLSDSSN-----SVLYISGEESVKQTKLRADRLGINNPSLHVLSETDMEYISSAIEEMN 167
Query: 289 PRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGP 348
P +++DSIQTVY + + G + QV+ECT+ L++ AK IP+ + GHVTK G IAGP
Sbjct: 168 PAFVVVDSIQTVYQSDITSAPGSVSQVRECTAELMKIAKTKGIPIFIVGHVTKEGSIAGP 227
Query: 349 RVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSE 408
R+LEH+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM + GL V NPS+IFL E
Sbjct: 228 RLLEHMVDTVLYFEGERHHTFRILRAVKNRFGSTNEMGIFEMREEGLTEVLNPSEIFLEE 287
Query: 409 QHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVLMK 466
+ + S AG ++ M+G+R L+EIQAL S R GI +R ++++VL K
Sbjct: 288 RSAGS---AGSSITASMEGTRPILVEIQALISPTSFGNPRRMATGIDHNRVSLLMAVLEK 344
Query: 467 QAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELR 526
+ GL LQ +L V GV L E A DLA+A +I SSF + P FIGE+GL GE+R
Sbjct: 345 RVGLLLQNQDAYLKVAGGVKLDEPAIDLAIAISIASSFRDTPPNPADCFIGEVGLTGEVR 404
Query: 527 MVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVI 576
VSR+E+RV AKLG+++ I+P + + + +E IG N+ E +
Sbjct: 405 RVSRIEQRVKEAAKLGFKRMIIPAANLEGWTKP--KGIEVIGVANVAEAL 452
>gi|116871617|ref|YP_848398.1| DNA repair protein RadA [Listeria welshimeri serovar 6b str.
SLCC5334]
gi|116740495|emb|CAK19615.1| DNA repair protein RadA [Listeria welshimeri serovar 6b str.
SLCC5334]
Length = 457
Score = 357 bits (917), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 191/448 (42%), Positives = 276/448 (61%), Gaps = 22/448 (4%)
Query: 109 GKANRTN-WVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEV 167
KA RT +VC CGY +W G C C M T P K +
Sbjct: 2 AKAKRTTKFVCQACGYESPKWMGKCPNCNEWNQMVEALEPSKKSRSAFNHTGEPSKATPI 61
Query: 168 QPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQM 227
+ ++ +++ +P E+ RVLGGG+VPGS+VL+GGDPG+GKSTLLLQ+
Sbjct: 62 TQI----ASEEEARVETNMP-------ELNRVLGGGVVPGSMVLVGGDPGIGKSTLLLQV 110
Query: 228 AAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPL 287
+A + + V+Y+SGEES++Q RA+R+ ++ + L++Y+ T++E + E + +
Sbjct: 111 SAQLTLTN-----KKVLYISGEESIKQTKLRAERLQVSGDNLYVYAETNLEAVQETIDFV 165
Query: 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAG 347
P ++IDSIQTVY V +AG + QV+ECT+AL+R AK NI + + GHVTK G IAG
Sbjct: 166 KPDFVVIDSIQTVYHPDVTSAAGSVSQVRECTAALMRIAKMQNIAIFIVGHVTKEGAIAG 225
Query: 348 PRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLS 407
PR+LEH+VD VLY EGE+ +YR+LR+VKNRFGST+E+G+FEM +GL V+NPS++FL
Sbjct: 226 PRLLEHMVDTVLYFEGERHHAYRILRAVKNRFGSTNEMGIFEMRDIGLVEVANPSEVFLE 285
Query: 408 EQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLM 465
E+ E +G V M+G+R L+EIQAL R GI ++ +I++VL
Sbjct: 286 ERL---EGASGSTVVASMEGTRPVLVEIQALVSPTMFGNAKRMATGIDYNKVSLIMAVLE 342
Query: 466 KQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGEL 525
K+ GL LQ +L GV L E A DLAVA ++ SS+ + P + FIGE+GL GE+
Sbjct: 343 KRVGLMLQNQDAYLKAAGGVKLDEPAVDLAVAVSVASSYRDKPTRSTDCFIGELGLTGEI 402
Query: 526 RMVSRMEKRVSTVAKLGYRKCIVPKSAE 553
R V+R+E+RV AKLG+++ +PK+ E
Sbjct: 403 RRVARIEQRVQEAAKLGFKRIFIPKNNE 430
>gi|423556921|ref|ZP_17533224.1| DNA repair protein RadA [Bacillus cereus MC67]
gi|401194236|gb|EJR01228.1| DNA repair protein RadA [Bacillus cereus MC67]
Length = 458
Score = 357 bits (916), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 206/476 (43%), Positives = 288/476 (60%), Gaps = 30/476 (6%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQ----KPEEV 167
+T + C +CGY ++ G C C T+ + PVV L + E
Sbjct: 4 KKTKFTCQECGYQSPKYMGKCPGCGKWNTLV------EEMEPVVSSRRLNYVNAIQSEVT 57
Query: 168 QPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQM 227
+P RL EV + RI E RVLGGG+V GSLVLIGGDPG+GKSTLLLQ+
Sbjct: 58 KPRRLTEVETNS---EARIETKF---QEFNRVLGGGIVDGSLVLIGGDPGIGKSTLLLQI 111
Query: 228 AAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPL 287
++ +AD V+Y+SGEES +QI RADR+ + LF+ + TD++ I ++ +
Sbjct: 112 SSQLAD-----SSYDVLYISGEESAKQIKLRADRLHVKGSNLFVVAETDLQRIAAHIEEM 166
Query: 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAG 347
+P ++IDSIQT++L V + G + QV+ECT+ L++ AK IP+ + GHVTK G IAG
Sbjct: 167 NPAFVVIDSIQTIHLPEVTSAPGSVAQVRECTAELMKLAKTKGIPIFIVGHVTKEGAIAG 226
Query: 348 PRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLS 407
PR+LEH+VDAVLY EG++ +YR+LR+VKNRFGST+E+G+FEM +LGL V NPS+IFL
Sbjct: 227 PRMLEHMVDAVLYFEGDRHHTYRILRAVKNRFGSTNEMGIFEMKELGLAEVLNPSEIFLE 286
Query: 408 EQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVLM 465
E+ +AG V M+G+R L+EIQAL S R GI +R +I++VL
Sbjct: 287 ERPVG---VAGSTVVASMEGTRPVLVEIQALISPTSFGNPRRMATGIDHNRVSLIMAVLE 343
Query: 466 KQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGEL 525
K+ GL LQ +L V G+ L E A DLAVA +I SSF + A IGE+GL GE+
Sbjct: 344 KRTGLLLQNQDAYLKVAGGLKLDEPAIDLAVALSIASSFRDKATAPTDAVIGEVGLTGEI 403
Query: 526 RMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGF-EQMEFIGCKNLKEVINVVF 580
R VSR+E+RV AKLG+++ I+P+ K+L + +E +G NL E + +
Sbjct: 404 RRVSRIEQRVQEAAKLGFQRAIIPR---KNLGGWTIPDGIEVVGVSNLGEALRLTL 456
>gi|408355461|ref|YP_006843992.1| DNA repair protein RadA [Amphibacillus xylanus NBRC 15112]
gi|407726232|dbj|BAM46230.1| DNA repair protein RadA [Amphibacillus xylanus NBRC 15112]
Length = 455
Score = 357 bits (916), Expect = 9e-96, Method: Compositional matrix adjust.
Identities = 197/470 (41%), Positives = 291/470 (61%), Gaps = 25/470 (5%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVR 171
+T++VC +CGY +W G C C+ T++ ++ QKPE++ +
Sbjct: 4 KKTSFVCRECGYESPKWMGKCPTCQQWNTLEEELVIKTSTKHRGLGQQSGQKPEKITAIE 63
Query: 172 LLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAII 231
K ++ +P E+ RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ+ +
Sbjct: 64 ----TKEEPRMKTDMP-------ELNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQITNQL 112
Query: 232 ADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRA 291
A+ + +PV+Y+SGEESV Q RADR+ +++++L++ S T++ I ++ L+P
Sbjct: 113 AN-----KGNPVLYISGEESVRQTKLRADRLDVSSDQLYVLSETNMSIISAQIDQLNPSL 167
Query: 292 LIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVL 351
++IDSIQTV+ V + G + QV+ECT L+R AK +IP+ + GHVTK G IAGPR+L
Sbjct: 168 VVIDSIQTVFKDEVTSAPGSVSQVRECTGELMRIAKTKHIPIFIVGHVTKEGAIAGPRML 227
Query: 352 EHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHS 411
EH+VD VLY EGE+ SYR+LR VKNRFGST+E+G+FEM + GL V NPS+IFL E+
Sbjct: 228 EHMVDTVLYFEGERHHSYRILRGVKNRFGSTNEMGIFEMKESGLHEVLNPSEIFLEER-- 285
Query: 412 DSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVLMKQAG 469
S+ +AG V M+G+R L+EIQ+L S R GI +R ++++VL K+ G
Sbjct: 286 -SQGVAGSTVVASMEGTRPVLVEIQSLISPTSFGQARRMATGIDHNRVPLLMAVLEKRVG 344
Query: 470 LKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVS 529
L +Q ++ V G+ L E A DLAVA +I SSF IGE+GL GE+R VS
Sbjct: 345 LLMQNQDAYVKVAGGIKLDEPAIDLAVAISIASSFKGKACSPYDVLIGEVGLTGEIRRVS 404
Query: 530 RMEKRVSTVAKLGYRKCIVPKSAEKSLATLGF-EQMEFIGCKNLKEVINV 578
R+E+R+ KLG+++ I+P ++L L + +E IG +++E + +
Sbjct: 405 RIEQRIQEANKLGFKRVIIPA---RNLDGLQIPDSIEVIGVNSIQEAMKI 451
>gi|313203729|ref|YP_004042386.1| DNA replication and repair protein rada [Paludibacter
propionicigenes WB4]
gi|312443045|gb|ADQ79401.1| DNA replication and repair protein RadA [Paludibacter
propionicigenes WB4]
Length = 456
Score = 357 bits (916), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 202/470 (42%), Positives = 286/470 (60%), Gaps = 22/470 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
++ +VC +CG +W G C +C T + + VV K +P+ +
Sbjct: 5 KSVYVCQNCGVDSPKWIGKCPSCGEWNTYVEEVVSKDNTPKVVMGGLEITKQ---KPILI 61
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
EV + R S NE+ RVLGGGLVPGSLVLIGG+PG+GKSTL+LQ+ +
Sbjct: 62 TEVETSE---ESRFDTSC---NELNRVLGGGLVPGSLVLIGGEPGIGKSTLVLQVVLNMK 115
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
L YVSGEESV+Q+ RA+R+ + ++ S T +E I VQ + P L
Sbjct: 116 GKRTL-------YVSGEESVKQLKLRAERLKFENPDCYIVSETSLEQIFVHVQNIQPDVL 168
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
I+DSIQT+ + S G + QV+EC + LL+F+K T+IPVLL GH+ K G IAGP+VLE
Sbjct: 169 IVDSIQTISTEMIESSPGSVSQVRECAAHLLKFSKTTSIPVLLIGHINKEGSIAGPKVLE 228
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
HIVD VL EG++ YR+LRS+KNRFGST ELG+FEM Q GL+ VSNPS++ LS+ H
Sbjct: 229 HIVDTVLQFEGDQHYMYRILRSIKNRFGSTSELGIFEMQQSGLREVSNPSELLLSQNH-- 286
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMKQAGL 470
E L+G+A+A ++G R FLIE QAL S + T R G R +M+++VL K+AG
Sbjct: 287 -EGLSGVAIASAIEGVRPFLIETQALVSSAAYGTPQRSSTGFDLRRLNMLLAVLEKRAGF 345
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
K+ + +FLN+ G+ + + A DLAV +AI SS ++ I + GE+GL GE+R ++R
Sbjct: 346 KIAQKDVFLNIAGGIKVNDPAIDLAVISAILSSNVDIAIEKHVCVAGEVGLSGEIRPINR 405
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+E+R+ KLG++K I+P+ KSL L +E I K ++E V+F
Sbjct: 406 IEQRILEAEKLGFKKMIIPEYNLKSL-NLNKLNIELIQVKKVEEAFRVLF 454
>gi|196251132|ref|ZP_03149811.1| DNA repair protein RadA [Geobacillus sp. G11MC16]
gi|196209373|gb|EDY04153.1| DNA repair protein RadA [Geobacillus sp. G11MC16]
Length = 478
Score = 357 bits (916), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 193/447 (43%), Positives = 273/447 (61%), Gaps = 18/447 (4%)
Query: 107 KKGKANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEE 166
++ +T +VC +CGY +W G C C+ T + P V+ +L +P
Sbjct: 20 RRMAKKKTKFVCQECGYESAKWLGRCPGCQ---TWNSFVEEIERTKPAVRGAFLHSEPS- 75
Query: 167 VQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQ 226
P + + + + RI + E+ RVLGGG+V GSLVLIGGDPG+GKSTLLLQ
Sbjct: 76 -GPAKPIPITAVTAAQEPRIETKSV---ELNRVLGGGIVKGSLVLIGGDPGIGKSTLLLQ 131
Query: 227 MAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQP 286
+A +A V+Y+SGEESV+Q+ RA R+ + +L++ + D+E IV ++
Sbjct: 132 TSAQLA-----AAGHTVLYISGEESVKQVKLRAGRLHAESHQLYVLAEADLEYIVTAIET 186
Query: 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIA 346
+ P +I+DSIQTVY + + G + QV+ECT+ L++ AK I + + GHVTK G IA
Sbjct: 187 IQPACVIVDSIQTVYRTDITSAPGSVAQVRECTAELMKIAKTKGIAIFIVGHVTKEGAIA 246
Query: 347 GPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFL 406
GPR+LEH+VD VLY EGE+ +YR+LR+VKNRFGST+E+G+FEM +GL+ V NPS++FL
Sbjct: 247 GPRLLEHMVDTVLYFEGERHHTYRILRAVKNRFGSTNEIGIFEMRDIGLREVENPSEVFL 306
Query: 407 SEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVL 464
E+ S AG V M+G+R L+EIQAL S R G+ +R ++++VL
Sbjct: 307 EER---SRGAAGSTVVAAMEGTRPVLVEIQALVSPTSFGNPRRMATGLDHNRVSLLMAVL 363
Query: 465 MKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGE 524
K+ GL LQ +L V GV L E A DLAVA +I SSF + P IGE+GL GE
Sbjct: 364 EKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAVAVSIASSFRDRPTNPADVIIGEVGLTGE 423
Query: 525 LRMVSRMEKRVSTVAKLGYRKCIVPKS 551
+R VSR+E+RV KLG+ + IVPK+
Sbjct: 424 VRRVSRIEQRVQEAVKLGFSRVIVPKN 450
>gi|295694807|ref|YP_003588045.1| DNA repair protein RadA [Kyrpidia tusciae DSM 2912]
gi|295410409|gb|ADG04901.1| DNA repair protein RadA [Kyrpidia tusciae DSM 2912]
Length = 456
Score = 357 bits (916), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 208/470 (44%), Positives = 284/470 (60%), Gaps = 22/470 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T +VC CGY +++G C C GT+ S E G R WL ++ +PV +
Sbjct: 5 KTRYVCHGCGYQTVKFFGRCPGCGEWGTLVEESIEEPTPG---DRGWL-RRAHRSEPVPI 60
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
EV ++ W S FG E+ RVLGGGLVPGSLVLIGGDPG+GKSTLLLQ +A IA
Sbjct: 61 TEVPAACEE-RW----STGFG-ELDRVLGGGLVPGSLVLIGGDPGIGKSTLLLQASAQIA 114
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
PV+YVSGEES QI RA R+ L + TD+ + V+ + PR L
Sbjct: 115 QAR-----GPVLYVSGEESTRQIHLRARRLKAMEPALLVLPETDLGAVERVVERIDPRCL 169
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
+IDSIQTV+ V+ + G + QV+ECT LLR AK+ + L+ GHVTK G IAGPR+LE
Sbjct: 170 VIDSIQTVHDPDVSSAPGSVAQVRECTGRLLRLAKERELATLIVGHVTKEGAIAGPRLLE 229
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VDAV+Y EG +YR+LR+VKNRFGST+E+G+FEM GL+ V NPS++FL ++
Sbjct: 230 HMVDAVVYFEGALHHTYRILRAVKNRFGSTNEIGIFEMRDGGLREVHNPSELFLPDRQIA 289
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCV-SGSTVSRHV-NGIQASRADMIISVLMKQAGL 470
S G AV ++G+R L+EIQAL SG V R +GI R ++++VL K+ GL
Sbjct: 290 S---TGSAVVAGLEGTRPILVEIQALVADSGYAVPRRTASGIDVQRVALMLAVLEKRCGL 346
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
L+ ++NV GV L E A DL +A ++ SSF + P+ +IGE+GL GE+R VSR
Sbjct: 347 FLRNQDTYVNVAGGVRLDEPAVDLGLAVSLASSFRDRPVSPRDVYIGEVGLTGEIRTVSR 406
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+E+R+ K G+++CIVP + L G ME I + ++ F
Sbjct: 407 IEQRLGEAVKHGFQRCIVPAGNARELH--GPPGMEIIAVETVEAAFRAAF 454
>gi|375006891|ref|YP_004980521.1| DNA repair protein radA [Geobacillus thermoleovorans CCB_US3_UF5]
gi|359285737|gb|AEV17421.1| DNA repair protein radA [Geobacillus thermoleovorans CCB_US3_UF5]
Length = 484
Score = 357 bits (916), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 201/452 (44%), Positives = 276/452 (61%), Gaps = 23/452 (5%)
Query: 104 GTRKKGKANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWL-PQ 162
G R K +T +VC +CGY +W G C C+ T + E P V+ +L +
Sbjct: 24 GLRSMAK-KKTKFVCQECGYESAKWLGRCPGCQ---TWNSFVEEIEQEKPTVRGAFLHSE 79
Query: 163 KPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKST 222
+ +PV + V + P E+ RVLGGG+V GSLVLIGGDPG+GKST
Sbjct: 80 RAGSAKPVPITAVEAVQE------PRMKTNSAELDRVLGGGIVKGSLVLIGGDPGIGKST 133
Query: 223 LLLQMAAIIADV-HDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIV 281
LLLQ +A +A H V+YVSGEESV+Q+ RA R+ ++L++ + D+E IV
Sbjct: 134 LLLQTSAQLAAAGHQ------VLYVSGEESVKQVKLRAGRLRAECDQLYVLAEADLEYIV 187
Query: 282 EKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTK 341
V+ + P +IIDSIQTVY ++ + G + QV+ECT+ L++ AK I + + GHVTK
Sbjct: 188 AAVETVQPACVIIDSIQTVYRTDISSAPGSVAQVRECTAELMKLAKTKGIAIFIVGHVTK 247
Query: 342 SGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNP 401
G IAGPR+LEH+VD VLY EGE+ +YR+LR+VKNRFGST+E+G+FEM +GL+ V NP
Sbjct: 248 EGAIAGPRLLEHMVDTVLYFEGERHHTYRILRAVKNRFGSTNEIGIFEMRDIGLKEVENP 307
Query: 402 SKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADM 459
S++FL E+ S AG V M+G+R L+EIQAL S R G+ +R +
Sbjct: 308 SEVFLEER---SRGAAGSTVVAAMEGTRPVLVEIQALVSPTSFGNPRRMATGLDHNRVSL 364
Query: 460 IISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEI 519
+++VL K+ GL LQ +L V GV L E A DLAVA +I SSF + P IGE+
Sbjct: 365 LMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAVAVSIASSFRDRPTNPADVIIGEV 424
Query: 520 GLGGELRMVSRMEKRVSTVAKLGYRKCIVPKS 551
GL GE+R VSR+E+RV KLG+ + IVPK+
Sbjct: 425 GLTGEVRRVSRIEQRVQEAVKLGFSRIIVPKN 456
>gi|56418614|ref|YP_145932.1| DNA repair protein RadA [Geobacillus kaustophilus HTA426]
gi|56378456|dbj|BAD74364.1| DNA repair protein [Geobacillus kaustophilus HTA426]
Length = 457
Score = 357 bits (915), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 197/443 (44%), Positives = 272/443 (61%), Gaps = 20/443 (4%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWL-PQKPEEVQPV 170
+T +VC +CGY +W G C C+ T + E P V+ +L ++ +PV
Sbjct: 4 KKTKFVCQECGYESAKWLGRCPGCQ---TWNSFVEEIEQEKPTVRGAFLHSERAGSAKPV 60
Query: 171 RLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAI 230
+ V + P E+ RVLGGG+V GSLVLIGGDPG+GKSTLLLQ +A
Sbjct: 61 PITAVEAVQE------PRMKTNSAELDRVLGGGIVKGSLVLIGGDPGIGKSTLLLQTSAQ 114
Query: 231 IADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPR 290
+A V+YVSGEESV+Q+ RA R+ ++L++ + D+E IV V+ + P
Sbjct: 115 LA-----AAGHQVLYVSGEESVKQVKLRAGRLRAECDQLYVLAEADLEYIVAAVETVQPA 169
Query: 291 ALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRV 350
+IIDSIQTVY ++ + G + QV+ECT+ L++ AK I + + GHVTK G IAGPR+
Sbjct: 170 CVIIDSIQTVYRTDISSAPGSVAQVRECTAELMKLAKTKGIAIFIVGHVTKEGAIAGPRL 229
Query: 351 LEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQH 410
LEH+VD VLY EGE+ +YR+LR+VKNRFGST+E+G+FEM +GL+ V NPS++FL E+
Sbjct: 230 LEHMVDTVLYFEGERHHTYRILRAVKNRFGSTNEIGIFEMRDIGLKEVENPSEVFLEER- 288
Query: 411 SDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVLMKQA 468
S AG V M+G+R L+EIQAL S R G+ +R ++++VL K+
Sbjct: 289 --SRGAAGSTVVAAMEGTRPVLVEIQALVSPTSFGNPRRMATGLDHNRVSLLMAVLEKRV 346
Query: 469 GLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMV 528
GL LQ +L V GV L E A DLAVA +I SSF + P IGE+GL GE+R V
Sbjct: 347 GLLLQNQDAYLKVAGGVKLDEPAIDLAVAVSIASSFRDRPTNPADVIIGEVGLTGEVRRV 406
Query: 529 SRMEKRVSTVAKLGYRKCIVPKS 551
SR+E+RV KLG+ + IVPK+
Sbjct: 407 SRIEQRVQEAVKLGFSRIIVPKN 429
>gi|422408258|ref|ZP_16485219.1| DNA repair protein RadA [Listeria monocytogenes FSL F2-208]
gi|313611200|gb|EFR86010.1| DNA repair protein RadA [Listeria monocytogenes FSL F2-208]
Length = 457
Score = 357 bits (915), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 191/448 (42%), Positives = 277/448 (61%), Gaps = 22/448 (4%)
Query: 109 GKANRTN-WVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEV 167
KA RT +VC CGY +W G C C M T P K
Sbjct: 2 AKAKRTTKFVCQACGYESAKWMGKCPNCNEWNQMVEALEPSKKSRSAFNHTGEPSK---A 58
Query: 168 QPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQM 227
P+ +E ++ K+++ +P E+ RVLGGG+VPGS+VL+GGDPG+GKSTLLLQ+
Sbjct: 59 TPITQIE-SETEKRVETNMP-------ELNRVLGGGVVPGSMVLVGGDPGIGKSTLLLQV 110
Query: 228 AAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPL 287
+A + + V+Y+SGEES++Q RA+R+ ++ + L++Y+ T++E + E + +
Sbjct: 111 SAQLTLTN-----KKVLYISGEESIKQTKLRAERLQVSGDNLYVYAETNLEAVQETIDFV 165
Query: 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAG 347
P ++IDSIQTVY V +AG + QV+ECT+AL+R AK NI + + GHVTK G IAG
Sbjct: 166 KPDFVVIDSIQTVYHPDVTSAAGSVSQVRECTAALMRIAKMQNIAIFIVGHVTKEGAIAG 225
Query: 348 PRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLS 407
PR+LEH+VD VLY EGE+ +YR+LR+VKNRFGST+E+G+FEM +GL V+NPS++FL
Sbjct: 226 PRLLEHMVDTVLYFEGERHHAYRILRAVKNRFGSTNEMGIFEMRDVGLVEVANPSEVFLE 285
Query: 408 EQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLM 465
E+ E +G V M+G+R L+EIQAL R GI ++ +I++VL
Sbjct: 286 ERL---EGASGSTVVASMEGTRPVLVEIQALVSPTMFGNAKRMATGIDYNKVSLIMAVLE 342
Query: 466 KQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGEL 525
K+ GL LQ +L GV L E A DLA+A ++ SS+ + P + FIGE+GL GE+
Sbjct: 343 KRVGLMLQNQDAYLKAAGGVKLDEPAVDLAIAVSVASSYRDKPTRSTDCFIGELGLTGEI 402
Query: 526 RMVSRMEKRVSTVAKLGYRKCIVPKSAE 553
R V+R+E+RV A G+++ +PK+ E
Sbjct: 403 RRVARIEQRVQEAAXXGFKRIFIPKNNE 430
>gi|268317889|ref|YP_003291608.1| DNA repair protein RadA [Rhodothermus marinus DSM 4252]
gi|262335423|gb|ACY49220.1| DNA repair protein RadA [Rhodothermus marinus DSM 4252]
Length = 453
Score = 357 bits (915), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 195/469 (41%), Positives = 292/469 (62%), Gaps = 23/469 (4%)
Query: 114 TNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRLL 173
T +VC CGY +W G C C TM E+ PV R +P++ E +
Sbjct: 6 TRYVCQACGYEAPRWMGRCPDCGGWNTMVE----ETVPTPVKAR--VPRRVAEAPGADPV 59
Query: 174 EVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIAD 233
++ + + R+ ++G+ E+ RVLGGG+VPGSL+L+ GDPG+GKSTL+ ++A + D
Sbjct: 60 PLSAVPLEAEARL-VTGV--AELDRVLGGGIVPGSLILLAGDPGIGKSTLMTELARYLPD 116
Query: 234 VHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALI 293
V+YV+GEESV Q+ RA R+ + + L L + T++E I+E + ++P L+
Sbjct: 117 RR-------VLYVTGEESVRQVRLRARRLGVEGDNLLLLAETNLEAILEAARRVAPDVLV 169
Query: 294 IDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEH 353
+DSIQTVY + + G + QV+E + L+ +AK T++PV L GHVTK G IAGPRVLEH
Sbjct: 170 VDSIQTVYRPELESAPGSVSQVRESAALLMHYAKTTHVPVFLVGHVTKEGAIAGPRVLEH 229
Query: 354 IVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDS 413
+VD VLY EG++ +YR+LR+VKNRFG+T E+GVFEM + GL+AV NPS +FLSE+ +
Sbjct: 230 MVDTVLYFEGDRHHAYRILRAVKNRFGATHEIGVFEMHETGLRAVDNPSALFLSERRYGT 289
Query: 414 EFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMKQAGLK 471
+G V ++G+R L+EIQAL + T R+ G R M+++VL K+ GL+
Sbjct: 290 ---SGSTVVCTLEGTRPVLVEIQALVTPTAYGTPQRNATGFDYRRLQMLLAVLEKREGLR 346
Query: 472 LQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRM 531
L + +F+NVV G+ L E A DL V A+ SSF + P G IGE+GLGGE+R V ++
Sbjct: 347 LAAHDVFVNVVGGLRLEEPAADLGVLVAVASSFRDIPADTGTVLIGEVGLGGEIRGVGQL 406
Query: 532 EKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+ R+ A+LG+R+ +VP K L L + +E +G ++L E +++V
Sbjct: 407 DVRLREAARLGFRQALVPAHHLKGL--LRPDGLEVVGVRSLHEALDLVL 453
>gi|398309189|ref|ZP_10512663.1| DNA repair protein RadA [Bacillus mojavensis RO-H-1]
Length = 458
Score = 357 bits (915), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 199/470 (42%), Positives = 280/470 (59%), Gaps = 26/470 (5%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKR---YSAGESDEGPVVQRTWLPQKPEEVQ 168
++ ++C CGY +W G C C + TM A + QKP +
Sbjct: 4 TKSKFICQSCGYESPKWMGKCPGCGAWNTMVEEMIKKAPANRRAAFSHSVQTVQKPSPIT 63
Query: 169 PVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMA 228
+ E + QL E RVLGGG+V GSLVLIGGDPG+GKSTLLLQ++
Sbjct: 64 SIETSEEPRVKTQL-----------GEFNRVLGGGVVKGSLVLIGGDPGIGKSTLLLQVS 112
Query: 229 AIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLS 288
A ++ G V+Y+SGEESV+Q RADR+ I L + S TD+E I ++ ++
Sbjct: 113 AQLS-----GSSRHVLYISGEESVKQTKLRADRLGINNPSLHVLSETDMEYISSAIEEMN 167
Query: 289 PRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGP 348
P +++DSIQTVY + + G + QV+ECT+AL++ AK IP+ + GHVTK G IAGP
Sbjct: 168 PAFVVVDSIQTVYQSDITSAPGSVSQVRECTAALMKIAKTKGIPIFIVGHVTKEGSIAGP 227
Query: 349 RVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSE 408
R+LEH+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM + GL V NPS+IFL E
Sbjct: 228 RLLEHMVDTVLYFEGERHHTFRILRAVKNRFGSTNEMGIFEMREEGLTEVLNPSEIFLEE 287
Query: 409 QHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVLMK 466
+ + S +G ++ M+G+R L+EIQAL S R GI +R ++++VL K
Sbjct: 288 RSAGS---SGSSITASMEGTRPILVEIQALISPTSFGNPRRMATGIDHNRVSLLMAVLEK 344
Query: 467 QAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELR 526
+ GL LQ +L V GV L E A DLA+A +I SSF + P FIGE+GL GE+R
Sbjct: 345 RVGLLLQNQDAYLKVAGGVKLDEPAIDLAIAVSIASSFRDTPPNPADCFIGEVGLTGEVR 404
Query: 527 MVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVI 576
VSR+E+RV AKLG+++ I+P + + +E IG N+ E +
Sbjct: 405 RVSRIEQRVKEAAKLGFKRMIIPAANLDGWTKP--KGIEVIGVANVSEAL 452
>gi|312130236|ref|YP_003997576.1| DNA repair protein rada [Leadbetterella byssophila DSM 17132]
gi|311906782|gb|ADQ17223.1| DNA repair protein RadA [Leadbetterella byssophila DSM 17132]
Length = 455
Score = 357 bits (915), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 196/474 (41%), Positives = 302/474 (63%), Gaps = 30/474 (6%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTM--KRYSAGESDEGPVVQRTWLPQKPEEV--Q 168
+T++ C CGY +W G C +C T + S GE++ + W +KP+++ +
Sbjct: 5 KTSFFCQKCGYNSPKWLGRCPSCGEWSTFVEEVVSNGETE-----RSLW--RKPDKITSK 57
Query: 169 PVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMA 228
P L +++ K +RI E RVLGGGLVPGSL+L+GG+PG+GKSTL+LQ+A
Sbjct: 58 PRLLSQIDHAEK---YRIITED---EEFNRVLGGGLVPGSLILVGGEPGIGKSTLMLQLA 111
Query: 229 AIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLS 288
+ D + ++YVSGEES +QI RA+R+ + E ++ + T + I + ++ +
Sbjct: 112 LGLKDYN-------ILYVSGEESEQQIKMRAERIPLKNERCYVLTETATDVIFKHIEMIE 164
Query: 289 PRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGP 348
P +IIDSIQT+ V AG + QVKEC + ++RFAK++++PV+L GH+TK G +AGP
Sbjct: 165 PDVVIIDSIQTLVSPLVDSGAGSVSQVKECAAEIMRFAKESDVPVILIGHITKEGSLAGP 224
Query: 349 RVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSE 408
+VLEH+VD VL EG++F +YR+LR++KNRFG+ ELG++EM GL+ VSNPS+I +SE
Sbjct: 225 KVLEHMVDTVLQFEGDRFMTYRILRTIKNRFGNASELGIYEMLSEGLRQVSNPSEILISE 284
Query: 409 QHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMK 466
+ +E L+G+A+A +++G+R IEIQ+L + + T R NG R M+++VL K
Sbjct: 285 K---TEQLSGVAIAAMIEGNRPLQIEIQSLVSTANYGTPQRSSNGFDPRRLQMLLAVLEK 341
Query: 467 QAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELR 526
+ G +L +FLNV G+ + + A DLAV ++I SS+ + IP+ + F E+GLGGE+R
Sbjct: 342 RGGFRLGTQDVFLNVAGGLRVDDPAIDLAVCSSIVSSYEDLVIPHSVCFGAEVGLGGEIR 401
Query: 527 MVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
V+R+E R+S AKLG+ K + K+ KS+ T F +E G L+EV +F
Sbjct: 402 PVNRVEARISEAAKLGFEKIFISKNHLKSIRTENF-SIEIRGVGKLEEVFQELF 454
>gi|403382837|ref|ZP_10924894.1| DNA repair protein RadA [Paenibacillus sp. JC66]
Length = 455
Score = 357 bits (915), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 198/446 (44%), Positives = 283/446 (63%), Gaps = 22/446 (4%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVR 171
++T + C +CGY +W G C C++ +M E++ Q ++ +PV
Sbjct: 4 SKTKFCCQECGYESPKWLGKCPGCQAWNSM----VEETETIVKTQGFAASANSKKEKPVS 59
Query: 172 LLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAII 231
++ ++ G + P E+ RVLGGG+VPGSL+L+GGDPG+GKSTLLLQ +
Sbjct: 60 IITIDSGQE------PRILTQNQELNRVLGGGVVPGSLILVGGDPGIGKSTLLLQTS--- 110
Query: 232 ADVHDLGEPS-PVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPR 290
H L + V+Y+SGEES +Q RADR+ +E+LF+ T+ E I E + ++P
Sbjct: 111 ---HALTMSNLKVLYISGEESAKQTKLRADRLGSVSEQLFVLCETNFEHIAEAIDEVNPD 167
Query: 291 ALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRV 350
L+IDSIQTVY ++ + G + QV+ECT+ +R AK I +L GHVTK G IAGPR+
Sbjct: 168 FLVIDSIQTVYHPAISSAPGSVSQVRECTAHFMRIAKGRGIATVLVGHVTKEGAIAGPRL 227
Query: 351 LEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQH 410
LEH+VD VLY EGE+ +YRLLR+VKNRFGST+E+G+FEM++ GL VSNPS++FLSE+
Sbjct: 228 LEHMVDCVLYFEGERHHTYRLLRAVKNRFGSTNEIGIFEMTEAGLVEVSNPSELFLSER- 286
Query: 411 SDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVS--RHVNGIQASRADMIISVLMKQA 468
+G AVA M+G+R L+E+QAL + S R G+ R +II+VL K+
Sbjct: 287 --PAGASGSAVAASMEGTRPVLVELQALVATTHFPSPRRMSTGVDHHRMALIIAVLEKRI 344
Query: 469 GLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMV 528
G+ LQ ++LNV GV L E A DLA+A +I SSF + P+ +G+ GEIGL GE+R V
Sbjct: 345 GMMLQNQDVYLNVAGGVKLDEPAVDLAIAVSIASSFKDQPVESGVVVFGEIGLTGEVRGV 404
Query: 529 SRMEKRVSTVAKLGYRKCIVPKSAEK 554
SR+E+RV KLG+++ I+PK + K
Sbjct: 405 SRIEQRVKEAQKLGFQRIIMPKKSLK 430
>gi|397690180|ref|YP_006527434.1| DNA repair protein RadA [Melioribacter roseus P3M]
gi|395811672|gb|AFN74421.1| DNA repair protein RadA [Melioribacter roseus P3M]
Length = 455
Score = 357 bits (915), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 196/449 (43%), Positives = 285/449 (63%), Gaps = 26/449 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T +VCS+CGY +W G C CES + ++E + T +K + +
Sbjct: 5 KTKYVCSNCGYETIRWIGKCPECESWNSF-------TEE---IIETGKHRKEKHSGSYKT 54
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
++++ + + + RI +G+ NE RVLGGG++PGS++LIGGDPG+GKSTL+LQ A+ I
Sbjct: 55 FKLSRTIAESEKRIK-TGI--NEFDRVLGGGMMPGSVILIGGDPGIGKSTLVLQAASRIN 111
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
V+YV+GEES+ QI RA R+ I ++ L + + T++E+I+ V+ P +
Sbjct: 112 --------GNVLYVTGEESINQISQRAKRLGINSDSLSVLTETNLENILTAVEKEKPDVV 163
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
I+DSIQTVY + +AG + Q++E S L+ AKK N V+L GHVTK G IAGP++LE
Sbjct: 164 IVDSIQTVYKPELDNTAGTVTQIRESASELMNVAKKQNCSVVLIGHVTKEGIIAGPKILE 223
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
HIVD VL EGEK SYR+LRS KNRFG+T+E+G+FEM + GLQ V NPS+IFL+E+ +D
Sbjct: 224 HIVDTVLQFEGEKSHSYRILRSQKNRFGNTNEIGIFEMLETGLQEVKNPSEIFLNERSTD 283
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
++G V ++GSR LIE+QAL R G R ++++VL K+AGL
Sbjct: 284 ---ISGTVVTASIEGSRPLLIEVQALVTPSYYGNPQRVATGFDYRRLAILLAVLEKRAGL 340
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
KL +FLN+ G+ + E A DLAV AI SSF NG+ IGE+GLGGE+R V+
Sbjct: 341 KLFSQNVFLNIAGGLRIDEPAIDLAVCVAIVSSFQNRIAKNGLVIIGEVGLGGEIRSVTH 400
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATL 559
++KR++ AKLG+ K I+P +K+ ++L
Sbjct: 401 IDKRINEAAKLGFGKIILPAGNKKNFSSL 429
>gi|392988344|ref|YP_006486937.1| DNA repair protein RadA [Enterococcus hirae ATCC 9790]
gi|392335764|gb|AFM70046.1| DNA repair protein RadA [Enterococcus hirae ATCC 9790]
Length = 456
Score = 357 bits (915), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 205/477 (42%), Positives = 285/477 (59%), Gaps = 30/477 (6%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQP 169
K + +VC +CGY ++ G C C TM E ++ +RT E+ +P
Sbjct: 3 KKAKVQFVCQNCGYVSPKFLGRCPNCGKWNTM----VEEIEQDTTDRRTRTSLTGEKAKP 58
Query: 170 VRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAA 229
++ EV + + P +E+ RVLGGG+VPGS++LIGGDPG+GKSTLLLQ++
Sbjct: 59 TKIAEV------IPKKEPRVKTKLDELNRVLGGGVVPGSMILIGGDPGIGKSTLLLQVSQ 112
Query: 230 IIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSP 289
+AD+ V+YVSGEES EQI RA+R+ E +LY+ TD+ +I ++ +SP
Sbjct: 113 QLADIG-----GKVLYVSGEESAEQIKLRAERLGSINTEFYLYAETDMNEISRAIEQISP 167
Query: 290 RALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPR 349
+IIDSIQT+ + AG + QV+E T+ LL+ AK I + + GHVTK G IAGPR
Sbjct: 168 DYVIIDSIQTMTQPDITSVAGSVSQVRETTAELLKIAKTNGIAIFIVGHVTKEGSIAGPR 227
Query: 350 VLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQ 409
+LEH+VD VLY EGE+ S+R+LR+VKNRFGST+E+G+FEM + GL+ V+NPS+IFL E+
Sbjct: 228 MLEHMVDTVLYFEGEQHHSFRILRAVKNRFGSTNEIGIFEMHEHGLEEVANPSQIFLEER 287
Query: 410 HSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQ 467
E G A+ V M+G+R L+EIQAL R G+ +R +I++VL K+
Sbjct: 288 ---LEGATGSAIVVAMEGTRPILVEIQALVTPTMYGNAKRTTTGLDFNRVSLIMAVLEKR 344
Query: 468 AGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRM 527
AGL LQ +L GV L E A DLA+A +I SS+ E FIGEIGL GE+R
Sbjct: 345 AGLLLQNQDAYLKAAGGVKLNEPAIDLAIAVSIASSYKEKGTQPTECFIGEIGLTGEIRR 404
Query: 528 VSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGF----EQMEFIGCKNLKEVINVVF 580
VS +E+RV V KLG+ K +PK+ LG +E +G L E + VF
Sbjct: 405 VSHIEQRVKEVQKLGFTKVYLPKN------NLGGWNPPTGIEVVGVATLAETLKRVF 455
>gi|148543538|ref|YP_001270908.1| DNA repair protein RadA [Lactobacillus reuteri DSM 20016]
gi|184152944|ref|YP_001841285.1| DNA repair protein RadA [Lactobacillus reuteri JCM 1112]
gi|227363507|ref|ZP_03847627.1| DNA repair protein RadA [Lactobacillus reuteri MM2-3]
gi|325681886|ref|ZP_08161404.1| DNA repair protein RadA [Lactobacillus reuteri MM4-1A]
gi|148530572|gb|ABQ82571.1| DNA replication and repair protein RadA [Lactobacillus reuteri DSM
20016]
gi|183224288|dbj|BAG24805.1| DNA repair protein RadA [Lactobacillus reuteri JCM 1112]
gi|227071444|gb|EEI09747.1| DNA repair protein RadA [Lactobacillus reuteri MM2-3]
gi|324978530|gb|EGC15479.1| DNA repair protein RadA [Lactobacillus reuteri MM4-1A]
Length = 457
Score = 357 bits (915), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 196/471 (41%), Positives = 288/471 (61%), Gaps = 30/471 (6%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTW----LPQKPEEVQ 168
RT +VC +CGY ++ G C C T+ E++ P + T L KP+++
Sbjct: 5 RTQYVCQNCGYNSPRYLGRCPNCGEWNTLVEEQV-EANSAPTKKATTTLTGLVAKPQKIN 63
Query: 169 PVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMA 228
+ E + +L NE+ RVLGGG+VPGSL+LIGGDPG+GKSTLLLQ++
Sbjct: 64 EIDSTETPRVKTKL-----------NELNRVLGGGIVPGSLILIGGDPGIGKSTLLLQVS 112
Query: 229 AIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLS 288
++D H V+YVSGEES QI RA+R+ +A ++ ++Y T+++ I + ++ L
Sbjct: 113 GQLSDEH-----HRVLYVSGEESGTQIKMRAERLKVAGDDFYVYPETNMDSIRDTIRDLK 167
Query: 289 PRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGP 348
P ++IDS+QT+ V+ + G + Q++E T+ L++ AK NI + + GHVTK G IAGP
Sbjct: 168 PEYVVIDSVQTMQATDVSSAIGSVSQIREVTAQLMQIAKSNNITIFVVGHVTKGGAIAGP 227
Query: 349 RVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSE 408
++LEH+VD VLY EG+ +YR+LRSVKNRFGST+ELG+FEM GL V NPS+IFL E
Sbjct: 228 KILEHMVDTVLYFEGDLHHTYRILRSVKNRFGSTNELGIFEMHTNGLTEVKNPSEIFLEE 287
Query: 409 QHSDSEFLAGLAVAVIMDGSRSFLIEIQAL---CVSGSTVSRHVNGIQASRADMIISVLM 465
+ D+ G AV V ++G+R L+EIQAL V G+ R G+ +R +I++VL
Sbjct: 288 RLHDA---TGSAVVVSLEGTRPILVEIQALVTPTVYGN-AQRTATGLSRNRVSLIMAVLE 343
Query: 466 KQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGEL 525
K+A L LQ +L GV L E A DLA+A +I SS+ + AF+GE+GL GE+
Sbjct: 344 KRANLMLQNQDAYLKAAGGVKLDEPAIDLAIAVSIASSYRDKGTQPTDAFVGEVGLTGEI 403
Query: 526 RMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVI 576
R V+R+E+RV+ KLG+++ +PK+ K ++ IG LKE +
Sbjct: 404 RRVNRIEQRVAEAEKLGFKRIFIPKNNLKGWKP--STNIQVIGVSTLKEAL 452
>gi|448236389|ref|YP_007400447.1| DNA repair protein [Geobacillus sp. GHH01]
gi|445205231|gb|AGE20696.1| DNA repair protein [Geobacillus sp. GHH01]
Length = 457
Score = 356 bits (914), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 197/443 (44%), Positives = 271/443 (61%), Gaps = 20/443 (4%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWL-PQKPEEVQPV 170
+T +VC +CGY +W G C C+ T + E P V+ +L ++ +PV
Sbjct: 4 KKTKFVCQECGYESAKWLGRCPGCQ---TWNSFVEEMEQEKPTVRGAFLHSERAGSAKPV 60
Query: 171 RLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAI 230
+ V + P E+ RVLGGG+V GSLVLIGGDPG+GKSTLLLQ +A
Sbjct: 61 PITAVEAVQE------PRMKTNSAELDRVLGGGIVKGSLVLIGGDPGIGKSTLLLQTSAQ 114
Query: 231 IADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPR 290
+A V+YVSGEESV+Q+ RA R+ + L++ + D+E IV V+ + P
Sbjct: 115 LA-----AAGHQVLYVSGEESVKQVKLRAGRLRAECDRLYVLAEADLEYIVAAVETVQPA 169
Query: 291 ALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRV 350
+IIDSIQTVY ++ + G + QV+ECT+ L++ AK I + + GHVTK G IAGPR+
Sbjct: 170 CVIIDSIQTVYRTDISSAPGSVAQVRECTAELMKLAKTKGIAIFIVGHVTKEGAIAGPRL 229
Query: 351 LEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQH 410
LEH+VD VLY EGE+ +YR+LR+VKNRFGST+E+G+FEM +GL+ V NPS++FL E+
Sbjct: 230 LEHMVDTVLYFEGERHHTYRILRAVKNRFGSTNEIGIFEMRDIGLKEVENPSEVFLEER- 288
Query: 411 SDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVLMKQA 468
S AG V M+G+R L+EIQAL S R G+ +R ++++VL K+
Sbjct: 289 --SRGAAGSTVVAAMEGTRPVLVEIQALVSPTSFGNPRRMATGLDHNRVSLLMAVLEKRV 346
Query: 469 GLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMV 528
GL LQ +L V GV L E A DLAVA +I SSF + P IGE+GL GE+R V
Sbjct: 347 GLLLQNQDAYLKVAGGVKLDEPAIDLAVAVSIASSFRDRPTNPADVIIGEVGLTGEVRRV 406
Query: 529 SRMEKRVSTVAKLGYRKCIVPKS 551
SR+E+RV KLG+ + IVPK+
Sbjct: 407 SRIEQRVQEAVKLGFSRIIVPKN 429
>gi|332877924|ref|ZP_08445662.1| DNA repair protein RadA [Capnocytophaga sp. oral taxon 329 str.
F0087]
gi|332684219|gb|EGJ57078.1| DNA repair protein RadA [Capnocytophaga sp. oral taxon 329 str.
F0087]
Length = 519
Score = 356 bits (914), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 199/496 (40%), Positives = 302/496 (60%), Gaps = 38/496 (7%)
Query: 106 RKKGKA---NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQ---RTW 159
+++GKA ++T +VC++CG +W G C AC T K ++ + V R
Sbjct: 40 KEQGKAMAKDKTVYVCANCGQESPKWVGRCPACGEWNTFKEFTVRKESVSAAVPGGFRQA 99
Query: 160 LPQKPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVG 219
LP +P +P+ + ++ + P + E+ RVLGGGLVPGSLVL+GG+PG+G
Sbjct: 100 LPGEPLRRRPIPVGQIVTDEE------PRLDMHDEELNRVLGGGLVPGSLVLLGGEPGIG 153
Query: 220 KSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMM-------------IAT 266
KSTL+LQ + D V+YVSGEES Q+ RADR++ ++
Sbjct: 154 KSTLVLQTVLKMTDKR-------VLYVSGEESARQLKLRADRLVPRAGGKADGREGFLSR 206
Query: 267 EELFLYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFA 326
+ T ++ I V+ P+ ++IDSIQT+ V S G + QV+EC + LL+FA
Sbjct: 207 SSCMVVCETSLDQIFLHVRNEQPQLVVIDSIQTIMTEAVDSSPGSISQVRECAALLLKFA 266
Query: 327 KKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELG 386
K++NIPV+L GH+ K G +AGP+VLEHIVDAVL EG++ YR+LRS+KNRFGST ELG
Sbjct: 267 KESNIPVILIGHINKEGTLAGPKVLEHIVDAVLQFEGDQHYMYRILRSIKNRFGSTAELG 326
Query: 387 VFEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--T 444
++EM Q GL+ VSNPS++ L+E H E L+G+A++ ++G R FLIE QAL + + T
Sbjct: 327 IYEMRQDGLRQVSNPSELLLTENH---EGLSGVAISSAIEGVRPFLIETQALVSTAAYGT 383
Query: 445 VSRHVNGIQASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSF 504
R G R +M+++VL K+ G KL + +FLN+ G+ +T+ A DL+V AA+ SS
Sbjct: 384 PQRSATGFDLRRLNMLLAVLEKRVGFKLAQKDVFLNIAGGLKVTDPAIDLSVVAAVLSSN 443
Query: 505 LEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQM 564
++ I +G+ GE+GL GE+R V+R+E+RV+ AKLG+R+ IVP+ + T ++
Sbjct: 444 VDTGIESGVCMAGEVGLSGEIRPVNRIEQRVAEAAKLGFRQMIVPRHNLQGFDTSKL-KI 502
Query: 565 EFIGCKNLKEVINVVF 580
E + + ++E + +F
Sbjct: 503 ELVPVRKVEEALRALF 518
>gi|345304168|ref|YP_004826070.1| DNA repair protein RadA [Rhodothermus marinus SG0.5JP17-172]
gi|345113401|gb|AEN74233.1| DNA repair protein RadA [Rhodothermus marinus SG0.5JP17-172]
Length = 453
Score = 356 bits (914), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 193/469 (41%), Positives = 289/469 (61%), Gaps = 23/469 (4%)
Query: 114 TNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRLL 173
T +VC CGY +W G C C TM + P R +P++ E +
Sbjct: 6 TRYVCQACGYEAPRWMGRCPDCGGWNTMVEETV------PTPVRARVPRRVAEAPGADPV 59
Query: 174 EVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIAD 233
++ + + R+ ++G+ E+ RVLGGG+VPGSL+L+ GDPG+GKSTL+ ++A + D
Sbjct: 60 PLSAVPLEAEARL-VTGV--AELDRVLGGGIVPGSLILLAGDPGIGKSTLMTELARYLPD 116
Query: 234 VHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALI 293
V+YV+GEESV Q+ RA R+ + + L L + T++E I+E + + P L+
Sbjct: 117 RR-------VLYVTGEESVRQVRLRARRLGVEGDNLLLLAETNLEAILEAARRVVPDVLV 169
Query: 294 IDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEH 353
+DSIQTVY + + G + QV+E + L+ +AK T++PV L GHVTK G IAGPRVLEH
Sbjct: 170 VDSIQTVYRPELESAPGSVSQVRESAALLMHYAKTTHVPVFLVGHVTKEGAIAGPRVLEH 229
Query: 354 IVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDS 413
+VD VLY EG++ +YR+LR+VKNRFG+T E+GVFEM + GL+AV NPS +FLSE+ +
Sbjct: 230 MVDTVLYFEGDRHHAYRILRAVKNRFGATHEIGVFEMHETGLRAVDNPSALFLSERRYGT 289
Query: 414 EFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMKQAGLK 471
+G V ++G+R L+EIQAL + T R+ G R M+++VL K+ GL+
Sbjct: 290 ---SGSTVVCTLEGTRPVLVEIQALVTPTAYGTPQRNATGFDYRRLQMLLAVLEKREGLR 346
Query: 472 LQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRM 531
L + +F+NVV G+ L E A DL V A+ SSF + P G IGE+GLGGE+R V ++
Sbjct: 347 LAAHDVFVNVVGGLRLEEPAADLGVLVAVASSFRDIPADTGTVLIGEVGLGGEIRGVGQL 406
Query: 532 EKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+ R+ A+LG+R+ +VP K L L + +E +G ++L E +++V
Sbjct: 407 DVRLREAARLGFRQALVPAHHLKGL--LRPDGLEVVGVRSLHEALDLVL 453
>gi|222152127|ref|YP_002561287.1| DNA repair protein RadA [Macrococcus caseolyticus JCSC5402]
gi|222121256|dbj|BAH18591.1| DNA repair protein RadA [Macrococcus caseolyticus JCSC5402]
Length = 453
Score = 356 bits (914), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 193/473 (40%), Positives = 289/473 (61%), Gaps = 29/473 (6%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGP--VVQRTWLPQKPEEVQPV 170
++ + C CGY +W G C C + M+ +GP + + K E+++ +
Sbjct: 5 KSTFECMACGYQSPKWMGKCPNCGAWNQMEEVIE-HKQKGPKNAISESQSDNKVEKLKDI 63
Query: 171 RLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAI 230
V + Q+ E+ RVLGGG+VPGSL+LIGGDPG+GKSTLLLQ+ A+
Sbjct: 64 TKESVPRDHTQM-----------KELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVCAM 112
Query: 231 IADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPR 290
++ H PV+Y+SGEESV Q RADR++ EL +Y+ T+++ I E V+ P+
Sbjct: 113 LSQNH------PVLYISGEESVRQTKLRADRLLEDAGELDVYAETNLQIIHETVKRSKPK 166
Query: 291 ALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRV 350
L+IDSIQT++ V + G + QV+ECT L+R AK+ NI + GHVTK G IAGPR+
Sbjct: 167 FLVIDSIQTIFHPEVTSAPGSVSQVRECTQELMRIAKQMNIATFIVGHVTKEGQIAGPRL 226
Query: 351 LEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQH 410
LEH+VD VLY EG+ SYR+LR+VKNRFGST+E+G+FEM GL+ V NPS++FL E+
Sbjct: 227 LEHMVDTVLYFEGDTHHSYRILRAVKNRFGSTNEMGIFEMKNTGLKEVLNPSEMFLEER- 285
Query: 411 SDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMKQA 468
++ +AG + M+G+R L+E+Q+L S R +G+ +R +++++VL K+
Sbjct: 286 --TKNVAGSTIVATMEGTRPLLVEVQSLVTPTSFHNPRRMASGVDHNRLNLLMAVLEKKQ 343
Query: 469 GLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMV 528
G LQ+ ++ V GV L E A DL+V +I SS+ + P FIGE+GL GE+R V
Sbjct: 344 GYLLQQQDAYVKVAGGVKLDEPAVDLSVIVSIASSYNDKPTRGDDCFIGEVGLTGEVRRV 403
Query: 529 SRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFE-QMEFIGCKNLKEVINVVF 580
+R+E+RV KLG+++ I+PK+ ++ F +E IG N+ E + + F
Sbjct: 404 ARIEQRVQEAEKLGFKRVIIPKN---NIGGWDFPGNIEVIGVTNINEALKMAF 453
>gi|138893758|ref|YP_001124211.1| DNA repair protein RadA [Geobacillus thermodenitrificans NG80-2]
gi|134265271|gb|ABO65466.1| DNA repair protein-like protein [Geobacillus thermodenitrificans
NG80-2]
Length = 457
Score = 356 bits (914), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 193/442 (43%), Positives = 271/442 (61%), Gaps = 18/442 (4%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVR 171
+T +VC +CGY +W G C C+ T + P V+ +L +P P +
Sbjct: 4 KKTKFVCQECGYESAKWLGRCPGCQ---TWNSFVEEIERTKPAVRGAFLHSEPS--GPAK 58
Query: 172 LLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAII 231
+ + + RI + E+ RVLGGG+V GSLVLIGGDPG+GKSTLLLQ +A +
Sbjct: 59 PIPITAVTAAQEPRIETKSV---ELNRVLGGGIVKGSLVLIGGDPGIGKSTLLLQTSAQL 115
Query: 232 ADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRA 291
A V+Y+SGEESV+Q+ RA R+ + +L++ + D+E IV ++ + P
Sbjct: 116 AAAGHT-----VLYISGEESVKQVKLRAGRLHAESHQLYVLAEADLEYIVTAIETIQPAC 170
Query: 292 LIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVL 351
+I+DSIQTVY + + G + QV+ECT+ L++ AK I + + GHVTK G IAGPR+L
Sbjct: 171 VIVDSIQTVYRTDITSAPGSVAQVRECTAELMKIAKTKGIAIFIVGHVTKEGAIAGPRLL 230
Query: 352 EHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHS 411
EH+VD VLY EGE+ +YR+LR+VKNRFGST+E+G+FEM +GL+ V NPS++FL E+
Sbjct: 231 EHMVDTVLYFEGERHHTYRILRAVKNRFGSTNEIGIFEMRDIGLREVENPSEVFLEER-- 288
Query: 412 DSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVLMKQAG 469
S AG V M+G+R L+EIQAL S R G+ +R ++++VL K+ G
Sbjct: 289 -SRGAAGSTVVAAMEGTRPVLVEIQALVSPTSFGNPRRMATGLDHNRVSLLMAVLEKRVG 347
Query: 470 LKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVS 529
L LQ +L V GV L E A DLAVA +I SSF + P IGE+GL GE+R VS
Sbjct: 348 LLLQNQDAYLKVAGGVKLDEPAIDLAVAVSIASSFRDRPTNPADVIIGEVGLTGEVRRVS 407
Query: 530 RMEKRVSTVAKLGYRKCIVPKS 551
R+E+RV KLG+ + IVPK+
Sbjct: 408 RIEQRVQEAVKLGFSRVIVPKN 429
>gi|16077155|ref|NP_387968.1| DNA repair protein RadA [Bacillus subtilis subsp. subtilis str.
168]
gi|221307898|ref|ZP_03589745.1| DNA repair protein RadA [Bacillus subtilis subsp. subtilis str.
168]
gi|221312219|ref|ZP_03594024.1| DNA repair protein RadA [Bacillus subtilis subsp. subtilis str.
NCIB 3610]
gi|221317153|ref|ZP_03598447.1| DNA repair protein RadA [Bacillus subtilis subsp. subtilis str.
JH642]
gi|221321416|ref|ZP_03602710.1| DNA repair protein RadA [Bacillus subtilis subsp. subtilis str.
SMY]
gi|402774330|ref|YP_006628274.1| DNA repair protein [Bacillus subtilis QB928]
gi|452916611|ref|ZP_21965233.1| DNA repair protein RadA [Bacillus subtilis MB73/2]
gi|586901|sp|P37572.1|RADA_BACSU RecName: Full=DNA repair protein RadA homolog; AltName: Full=DNA
repair protein Sms homolog
gi|467475|dbj|BAA05321.1| unknown [Bacillus subtilis]
gi|2632354|emb|CAB11863.1| DNA repair protein; 6-O-methylguanine-DNA methyltransferase
[Bacillus subtilis subsp. subtilis str. 168]
gi|402479516|gb|AFQ56025.1| DNA repair protein [Bacillus subtilis QB928]
gi|452114520|gb|EME04920.1| DNA repair protein RadA [Bacillus subtilis MB73/2]
Length = 458
Score = 356 bits (914), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 199/470 (42%), Positives = 279/470 (59%), Gaps = 26/470 (5%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKR---YSAGESDEGPVVQRTWLPQKPEEVQ 168
++ ++C CGY +W G C C + TM A + QKP +
Sbjct: 4 TKSKFICQSCGYESPKWMGKCPGCGAWNTMVEEMIKKAPANRRAAFSHSVQTVQKPSPIT 63
Query: 169 PVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMA 228
+ E + QL E RVLGGG+V GSLVLIGGDPG+GKSTLLLQ++
Sbjct: 64 SIETSEEPRVKTQL-----------GEFNRVLGGGVVKGSLVLIGGDPGIGKSTLLLQVS 112
Query: 229 AIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLS 288
A ++ G + V+Y+SGEESV+Q RADR+ I L + S TD+E I +Q ++
Sbjct: 113 AQLS-----GSSNSVLYISGEESVKQTKLRADRLGINNPSLHVLSETDMEYISSAIQEMN 167
Query: 289 PRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGP 348
P +++DSIQTVY + + G + QV+ECT+ L++ AK IP+ + GHVTK G IAGP
Sbjct: 168 PSFVVVDSIQTVYQSDITSAPGSVSQVRECTAELMKIAKTKGIPIFIVGHVTKEGSIAGP 227
Query: 349 RVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSE 408
R+LEH+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM + GL V NPS+IFL E
Sbjct: 228 RLLEHMVDTVLYFEGERHHTFRILRAVKNRFGSTNEMGIFEMREEGLTEVLNPSEIFLEE 287
Query: 409 QHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVLMK 466
+ + S AG ++ M+G+R L+EIQAL S R GI +R ++++VL K
Sbjct: 288 RSAGS---AGSSITASMEGTRPILVEIQALISPTSFGNPRRMATGIDHNRVSLLMAVLEK 344
Query: 467 QAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELR 526
+ GL LQ +L V GV L E A DLA+ +I SSF + P FIGE+GL GE+R
Sbjct: 345 RVGLLLQNQDAYLKVAGGVKLDEPAIDLAIVISIASSFRDTPPNPADCFIGEVGLTGEVR 404
Query: 527 MVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVI 576
VSR+E+RV AKLG+++ I+P + + +E IG N+ E +
Sbjct: 405 RVSRIEQRVKEAAKLGFKRMIIPAANLDGWTKP--KGIEVIGVANVAEAL 452
>gi|449092800|ref|YP_007425291.1| DNA repair protein RadA [Bacillus subtilis XF-1]
gi|449026715|gb|AGE61954.1| DNA repair protein RadA [Bacillus subtilis XF-1]
Length = 477
Score = 356 bits (913), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 199/470 (42%), Positives = 279/470 (59%), Gaps = 26/470 (5%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKR---YSAGESDEGPVVQRTWLPQKPEEVQ 168
++ ++C CGY +W G C C + TM A + QKP +
Sbjct: 23 TKSKFICQSCGYESPKWMGKCPGCGAWNTMVEEMIKKAPANRRAAFSHSVQTVQKPSPIT 82
Query: 169 PVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMA 228
+ E + QL E RVLGGG+V GSLVLIGGDPG+GKSTLLLQ++
Sbjct: 83 SIETSEEPRVKTQL-----------GEFNRVLGGGVVKGSLVLIGGDPGIGKSTLLLQVS 131
Query: 229 AIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLS 288
A ++ G + V+Y+SGEESV+Q RADR+ I L + S TD+E I +Q ++
Sbjct: 132 AQLS-----GSSNSVLYISGEESVKQTKLRADRLGINNPSLHVLSETDMEYISSAIQEMN 186
Query: 289 PRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGP 348
P +++DSIQTVY + + G + QV+ECT+ L++ AK IP+ + GHVTK G IAGP
Sbjct: 187 PAFVVVDSIQTVYQSDITSAPGSVSQVRECTAELMKIAKTKGIPIFIVGHVTKEGSIAGP 246
Query: 349 RVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSE 408
R+LEH+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM + GL V NPS+IFL E
Sbjct: 247 RLLEHMVDTVLYFEGERHHTFRILRAVKNRFGSTNEMGIFEMREEGLTEVLNPSEIFLEE 306
Query: 409 QHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVLMK 466
+ + S AG ++ M+G+R L+EIQAL S R GI +R ++++VL K
Sbjct: 307 RSAGS---AGSSITASMEGTRPILVEIQALISPTSFGNPRRMATGIDHNRVSLLMAVLEK 363
Query: 467 QAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELR 526
+ GL LQ +L V GV L E A DLA+ +I SSF + P FIGE+GL GE+R
Sbjct: 364 RVGLLLQNQDAYLKVAGGVKLDEPAIDLAIVISIASSFRDTPPNPADCFIGEVGLTGEVR 423
Query: 527 MVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVI 576
VSR+E+RV AKLG+++ I+P + + +E IG N+ E +
Sbjct: 424 RVSRIEQRVKEAAKLGFKRMIIPAANLDGWTKP--KGIEVIGVANVAEAL 471
>gi|384173747|ref|YP_005555132.1| DNA repair protein RadA [Bacillus subtilis subsp. subtilis str.
RO-NN-1]
gi|428277502|ref|YP_005559237.1| DNA repair protein RadA [Bacillus subtilis subsp. natto BEST195]
gi|291482459|dbj|BAI83534.1| DNA repair protein RadA [Bacillus subtilis subsp. natto BEST195]
gi|349592971|gb|AEP89158.1| DNA repair protein RadA [Bacillus subtilis subsp. subtilis str.
RO-NN-1]
Length = 458
Score = 356 bits (913), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 199/470 (42%), Positives = 279/470 (59%), Gaps = 26/470 (5%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKR---YSAGESDEGPVVQRTWLPQKPEEVQ 168
++ ++C CGY +W G C C + TM A + QKP +
Sbjct: 4 TKSKFICQSCGYESPKWMGKCPGCGAWNTMVEEMIKKAPANRRAAFSHSVQTVQKPSPIT 63
Query: 169 PVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMA 228
+ E + QL E RVLGGG+V GSLVLIGGDPG+GKSTLLLQ++
Sbjct: 64 SIETSEEPRVKTQL-----------GEFNRVLGGGVVKGSLVLIGGDPGIGKSTLLLQVS 112
Query: 229 AIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLS 288
A ++ G + V+Y+SGEESV+Q RADR+ I L + S TD+E I +Q ++
Sbjct: 113 AQLS-----GSSNSVLYISGEESVKQTKLRADRLGINNPSLHVLSETDMEYISSAIQEMN 167
Query: 289 PRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGP 348
P +++DSIQTVY + + G + QV+ECT+ L++ AK IP+ + GHVTK G IAGP
Sbjct: 168 PAFVVVDSIQTVYQSDITSAPGSVSQVRECTAELMKIAKTKGIPIFIVGHVTKEGSIAGP 227
Query: 349 RVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSE 408
R+LEH+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM + GL V NPS+IFL E
Sbjct: 228 RLLEHMVDTVLYFEGERHHTFRILRAVKNRFGSTNEMGIFEMREEGLTEVLNPSEIFLEE 287
Query: 409 QHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVLMK 466
+ + S AG ++ M+G+R L+EIQAL S R GI +R ++++VL K
Sbjct: 288 RSAGS---AGSSITASMEGTRPILVEIQALISPTSFGNPRRMATGIDHNRVSLLMAVLEK 344
Query: 467 QAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELR 526
+ GL LQ +L V GV L E A DLA+ +I SSF + P FIGE+GL GE+R
Sbjct: 345 RVGLLLQNQDAYLKVAGGVKLDEPAIDLAIVISIASSFRDTPPNPADCFIGEVGLTGEVR 404
Query: 527 MVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVI 576
VSR+E+RV AKLG+++ I+P + + +E IG N+ E +
Sbjct: 405 RVSRIEQRVKEAAKLGFKRMIIPAANLDGWTKP--KGIEVIGVANVAEAL 452
>gi|313889719|ref|ZP_07823361.1| DNA repair protein RadA [Streptococcus pseudoporcinus SPIN 20026]
gi|416851710|ref|ZP_11908855.1| DNA repair protein RadA [Streptococcus pseudoporcinus LQ 940-04]
gi|313121764|gb|EFR44861.1| DNA repair protein RadA [Streptococcus pseudoporcinus SPIN 20026]
gi|356739199|gb|EHI64431.1| DNA repair protein RadA [Streptococcus pseudoporcinus LQ 940-04]
Length = 457
Score = 356 bits (913), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 198/471 (42%), Positives = 289/471 (61%), Gaps = 24/471 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+ +VC +CGY ++ G C C + + E E ++ + E+ +PV+L
Sbjct: 5 KATFVCQECGYHSPKYLGRCPNCSAWSSFV-----EEVEVQELKNARVSLTGEKSRPVKL 59
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
+V+ L++ + + +E RVLGGG+VPGSL+LIGGDPG+GKSTLLLQ++ +A
Sbjct: 60 KDVDN----LNYSRTQTNM--DEFNRVLGGGVVPGSLILIGGDPGIGKSTLLLQVSTQLA 113
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+ V+YVSGEES EQI R++R+ E +LY+ T++++I +++ + P L
Sbjct: 114 N------KGTVLYVSGEESAEQIKLRSERLGEIDNEFYLYAETNMQEIRIEIEKIQPNFL 167
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQT+ +G G + QV+E T+ L++ AK NI + GHVTK G IAGPR+LE
Sbjct: 168 IIDSIQTIMSPDSSGVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTIAGPRMLE 227
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V+NPS++FL E+
Sbjct: 228 HMVDTVLYFEGERHHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVTNPSQVFLEERLDG 287
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
+ G A+ V M+GSR L E+Q+L R G+ +R +I++VL K+ GL
Sbjct: 288 A---TGSAIVVTMEGSRPILAEVQSLVTPTVFGNARRTTTGLDFNRVSLIMAVLEKRCGL 344
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ +L GV L E A DLAVA AI SS+ E P AF+GEIGL GE+R V+R
Sbjct: 345 LLQNQDAYLKAAGGVKLDEPAIDLAVAVAIASSYKELPTNPQEAFLGEIGLTGEIRRVTR 404
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVFT 581
+E+R++ AKLG+ K PK+A + L + +E +G + EV+ VFT
Sbjct: 405 IEQRINEAAKLGFTKIYAPKNALQGLDI--SQNIEVVGLSTVGEVLKAVFT 453
>gi|414153536|ref|ZP_11409859.1| repair protein radA homolog [Desulfotomaculum hydrothermale Lam5 =
DSM 18033]
gi|411454934|emb|CCO07763.1| repair protein radA homolog [Desulfotomaculum hydrothermale Lam5 =
DSM 18033]
Length = 450
Score = 356 bits (913), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 206/479 (43%), Positives = 294/479 (61%), Gaps = 43/479 (8%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRAC-------ESVGTMKRYSA-GESDEGPVVQRTWLPQK 163
N+T + C CG+ +W G C C E G + + +A G + GPV T +
Sbjct: 3 NKTTYACQSCGHQTARWLGRCPGCGEWNSLVEEAGVVPQKTARGIAGSGPV-PVTEVAAA 61
Query: 164 PEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTL 223
EE L E+N RVLGGGLVPGSLVL+GGDPG+GKSTL
Sbjct: 62 EEERYSTGLGELN---------------------RVLGGGLVPGSLVLVGGDPGIGKSTL 100
Query: 224 LLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEK 283
LLQ A+ +A V+YVSGEESV QI RA R+ +L L + T++ + +
Sbjct: 101 LLQAASAMAGSA-----GRVLYVSGEESVRQIKMRAQRIGALYPDLLLMAETNMAMVEKA 155
Query: 284 VQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSG 343
++ ++P A+++DSIQTVY VA + G + QV+ECT LLR AK +PV + GHVTK G
Sbjct: 156 IEEVAPMAVVLDSIQTVYHPDVASAPGSVSQVRECTGILLRVAKNKGLPVFVVGHVTKEG 215
Query: 344 DIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSK 403
+AGPRVLEH+VD VLY EGE+ +YR+LR+VKNRFGST+ELG+FEM GL VSNPS+
Sbjct: 216 TLAGPRVLEHMVDTVLYFEGERHQTYRILRTVKNRFGSTNELGIFEMRGAGLAEVSNPSE 275
Query: 404 IFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQAL-CVSGSTVSRHV-NGIQASRADMII 461
+FL+++ +AG AV ++GSR L+EIQAL C SG +V R + +G+ +R +I+
Sbjct: 276 LFLNQREQP---VAGSAVVPSLEGSRPLLVEIQALVCPSGFSVPRRMTSGVDYNRVALIM 332
Query: 462 SVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGL 521
+VL ++ GL+L + +++ V GV L E A DLA+A A+ SSF E P+ + +GE+GL
Sbjct: 333 AVLERRVGLRLSAHEAYVSAVGGVKLDEPAADLAIALAVASSFKEQPLQENLVVLGEVGL 392
Query: 522 GGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
GE+R V+ M+KR+ KLG+++C+ P +K A LG +++IG ++L+ +
Sbjct: 393 TGEIRSVAGMDKRLQEACKLGFKRCLGP-PLDKQTAALGI--IDYIGVQSLQAAVETAI 448
>gi|390943041|ref|YP_006406802.1| DNA repair protein RadA [Belliella baltica DSM 15883]
gi|390416469|gb|AFL84047.1| DNA repair protein RadA [Belliella baltica DSM 15883]
Length = 458
Score = 355 bits (912), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 193/475 (40%), Positives = 297/475 (62%), Gaps = 25/475 (5%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQ--- 168
+T + C +CG +W G C +C G Y + V + +W +E +
Sbjct: 4 TKTTFFCQNCGAQSPKWLGKCSSC---GEWNTYVEEVVQKEEVGRGSWKQGGTKEKRASV 60
Query: 169 PVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMA 228
P RL E+N + P E+ RVLGGG+V GSLVLIGG+PG+GKSTL+LQ+A
Sbjct: 61 PKRLQEINFEDQ------PRLITHDAELDRVLGGGIVAGSLVLIGGEPGIGKSTLMLQIA 114
Query: 229 AIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLS 288
++ + ++YVSGEES QI RA+RM + +E ++ S T+ + I ++++ L
Sbjct: 115 LMLNQ-------TKILYVSGEESESQIKMRAERMPLKSENCYVLSETNTQAIFQQIEALD 167
Query: 289 PRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGP 348
P L+IDSIQT++ + V +AG + QV+ECT+ L++FAK+T PV L GH+TK G IAGP
Sbjct: 168 PDILVIDSIQTLHSKHVESAAGSVSQVRECTAELMKFAKETGTPVFLVGHITKDGAIAGP 227
Query: 349 RVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSE 408
+VLEH+VD VL EG++ +YR+LR+ KNRFGST ELG++EM GL+ V+NPS+I L++
Sbjct: 228 KVLEHMVDTVLQFEGDRHLTYRILRTSKNRFGSTHELGIYEMRAEGLRPVANPSEILLTQ 287
Query: 409 QHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMK 466
+ E L G+A+ +M+G+R LIEIQ+L + T R G A R +M+++VL K
Sbjct: 288 RE---ELLNGVAIGAMMEGNRPLLIEIQSLVSPATYGTPQRSSTGHDAKRLNMLLAVLEK 344
Query: 467 QAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELR 526
+ G++L + +FLNV G+ + + A DLAV A++ SS+ + P+P + F GE+GLGGE+R
Sbjct: 345 RGGMRLGQQDVFLNVAGGLRVDDPALDLAVCASLISSYEDTPVPADLCFAGEVGLGGEIR 404
Query: 527 MVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVFT 581
V R+E R++ KLG+++ +V K A K + + +++ I L+E+ +F+
Sbjct: 405 AVHRIENRIAEAEKLGFKRIMVSKYAVKGMDIHKY-KIKVIQVSKLEEMYQGLFS 458
>gi|218780796|ref|YP_002432114.1| DNA repair protein RadA [Desulfatibacillum alkenivorans AK-01]
gi|218762180|gb|ACL04646.1| DNA repair protein RadA [Desulfatibacillum alkenivorans AK-01]
Length = 456
Score = 355 bits (912), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 202/478 (42%), Positives = 290/478 (60%), Gaps = 31/478 (6%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTM-----KRYSAGESDEGPVVQRTWLPQKP 164
KA +T + C DCGYT +W G C C +M K S+G + P
Sbjct: 3 KAQKTVFTCQDCGYTTPKWMGKCPDCGQWHSMVEGKPKAASSGLKAPFDLSGPGSRPVPI 62
Query: 165 EEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLL 224
+ V + + G+ +LD RVLGGGLV GS+VLIGGDPG+GKSTL+
Sbjct: 63 DSVDGIVEDRLATGIMELD--------------RVLGGGLVAGSMVLIGGDPGIGKSTLM 108
Query: 225 LQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKV 284
LQ+ +A V+YVSGEESV QI R+ R + LF+YS +E I++ +
Sbjct: 109 LQVMQSLAYAG-----LKVLYVSGEESVRQIKLRSQRTGSPSPNLFVYSEIVLEQILDVL 163
Query: 285 QPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGD 344
P+A+++DS+QT+Y + + + G + QV+E T L AKKT IP L GHVTK G
Sbjct: 164 DQEKPQAVVLDSVQTLYSQDLTSAPGSVSQVREVTFKLAMHAKKTGIPTFLVGHVTKDGA 223
Query: 345 IAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKI 404
IAGPR+LEH+VD VLY EGE+ YR+LR+VKNRFGST+E+GVFEM++ GL VSNPS +
Sbjct: 224 IAGPRLLEHMVDTVLYFEGERNHIYRVLRAVKNRFGSTNEIGVFEMAEHGLMEVSNPSAV 283
Query: 405 FLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVS--RHVNGIQASRADMIIS 462
FLSE+ E +G AV ++GSR L+EIQAL + S S R V G+ +++ ++++
Sbjct: 284 FLSER---PEHASGSAVTASLEGSRPILLEIQALASTSSFASPRRTVLGLDSNKVALLVA 340
Query: 463 VLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLG 522
VL K+ G+ L + +F+NV GV +TE A DLA+ A+ SSFL+ P+P +GE+GL
Sbjct: 341 VLEKKVGMPLMDQDVFMNVAGGVRVTEPAVDLAMVGAVASSFLDRPVPRDTVLMGEVGLT 400
Query: 523 GELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
GE+R V +ME R+ AK+G+ +C+ P S+ ++L T M+ +G K++ + + +F
Sbjct: 401 GEIRGVGQMETRIKEAAKMGFEQCLAPASSLRNLRTP--SGMKVVGVKSVSQALEHLF 456
>gi|228471219|ref|ZP_04056032.1| DNA repair protein RadA [Porphyromonas uenonis 60-3]
gi|228307034|gb|EEK16116.1| DNA repair protein RadA [Porphyromonas uenonis 60-3]
Length = 474
Score = 355 bits (912), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 194/486 (39%), Positives = 291/486 (59%), Gaps = 36/486 (7%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRY------SAGESDEGPVVQR--------- 157
+T + CS CG T +W G C C+ T++ ++G S +QR
Sbjct: 5 KTIYKCSACGATYSRWQGQCNECQEWNTIEEQLAQPETTSGRSTPAQEIQRKLKQIHEGA 64
Query: 158 TWLPQKPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPG 217
TW EEV+P++L+E ++ + R+ L E+ R+LGGGLV GS L+GG+PG
Sbjct: 65 TWDGLHSEEVRPIQLIEGSE-----ESRVDL---HDEELNRLLGGGLVQGSFTLLGGEPG 116
Query: 218 VGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDI 277
+GKSTL+ Q ++ L YVSGEES +Q+ RADR+ I +E+ +Y TD+
Sbjct: 117 IGKSTLIFQTVLRCPELKTL-------YVSGEESAQQLKLRADRIGIHSEQCLIYCDTDL 169
Query: 278 EDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAG 337
++I+ K ++P L+IDSIQTV S G + Q+KEC + LL FAK + IPV++ G
Sbjct: 170 DNILLKALQIAPDLLVIDSIQTVTTARSESSPGSISQIKECANLLLHFAKSSGIPVIVIG 229
Query: 338 HVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQA 397
H+ K G IAGP++LEH VD VL EG+K YR+LRS KNRFGSTD+LG++EM+ GL A
Sbjct: 230 HINKEGSIAGPKILEHTVDTVLQFEGDKQHLYRILRSHKNRFGSTDDLGIYEMNSSGLVA 289
Query: 398 VSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQAS 455
VSNPS+ +S ++E L+G+ VA ++G R +IE QAL S + R G
Sbjct: 290 VSNPSEHLIS---GNTEGLSGVVVACAVEGIRPIMIETQALVSSAIYNNPQRSTTGFDLR 346
Query: 456 RADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAF 515
R +M+++VL K+AG KL + +FLN+ G+ + +TA DLAV A+ SS L+ +P+
Sbjct: 347 RLNMLLAVLEKRAGFKLIQKDVFLNITGGIKINDTAVDLAVLCAVLSSNLDIAVPSKTCM 406
Query: 516 IGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEV 575
GE+GL GE+R VSR+E+R++ +LG+ + ++PK+ KSL ++ +E + C +
Sbjct: 407 TGEVGLAGEIRAVSRIERRIAEAHRLGFTRILIPKANAKSLQQRNYD-IEIVPCDRVDHA 465
Query: 576 INVVFT 581
+F+
Sbjct: 466 FRTLFS 471
>gi|239825666|ref|YP_002948290.1| DNA repair protein RadA [Geobacillus sp. WCH70]
gi|239805959|gb|ACS23024.1| DNA repair protein RadA [Geobacillus sp. WCH70]
Length = 457
Score = 355 bits (911), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 194/444 (43%), Positives = 275/444 (61%), Gaps = 22/444 (4%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEV--QP 169
+T +VC +CGY +W G C C + +M E + + R +++ +P
Sbjct: 4 KKTKFVCQECGYESAKWLGRCPGCSTWNSM----VEEIERTKPMTRGVFVHSTDDIISKP 59
Query: 170 VRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAA 229
V + V + P +E RVLGGG+V GSLVLIGGDPG+GKSTLLLQ++A
Sbjct: 60 VPITTVTTTQE------PRIQTNISEFNRVLGGGIVKGSLVLIGGDPGIGKSTLLLQVSA 113
Query: 230 IIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSP 289
+A + V+Y+SGEESV+Q RADR+ IA+++L++ + TD+E I E ++ + P
Sbjct: 114 QLAAMQH-----KVLYISGEESVKQTKLRADRLHIASDQLYVLAETDLEYIAEAIENVRP 168
Query: 290 RALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPR 349
++IDSIQT+Y + + G + QV+ECT+ L++ AK I + + GHVTK G IAGPR
Sbjct: 169 ACVVIDSIQTIYRADITSAPGSVSQVRECTAELMKIAKTKGIAIFIVGHVTKEGAIAGPR 228
Query: 350 VLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQ 409
+LEH+VD VLY EGE+ +YR+LR+VKNRFGST+E+G+FEM GL V NPS++FL E+
Sbjct: 229 ILEHMVDTVLYFEGERHHTYRILRAVKNRFGSTNEIGIFEMRDSGLIEVENPSEVFLEER 288
Query: 410 HSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVLMKQ 467
S +AG V M+G+R L+EIQAL S R GI +R ++++VL K+
Sbjct: 289 ---SRGVAGSTVVAAMEGTRPVLVEIQALVSPTSFGNPRRMATGIDHNRVSLLMAVLEKR 345
Query: 468 AGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRM 527
GL LQ +L V GV L E A DLA+A +I SSF + P IGE+GL GE+R
Sbjct: 346 VGLLLQNQDAYLKVAGGVKLDEPAIDLAIAVSIASSFRDQPTNPSDVIIGEVGLTGEVRR 405
Query: 528 VSRMEKRVSTVAKLGYRKCIVPKS 551
VSR+E+RV KLG+ + I+PK+
Sbjct: 406 VSRIEQRVQEAVKLGFSRIIIPKN 429
>gi|357638205|ref|ZP_09136078.1| DNA repair protein RadA [Streptococcus urinalis 2285-97]
gi|418417077|ref|ZP_12990275.1| DNA repair protein RadA [Streptococcus urinalis FB127-CNA-2]
gi|357586659|gb|EHJ56067.1| DNA repair protein RadA [Streptococcus urinalis 2285-97]
gi|410873133|gb|EKS21069.1| DNA repair protein RadA [Streptococcus urinalis FB127-CNA-2]
Length = 453
Score = 355 bits (911), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 199/471 (42%), Positives = 288/471 (61%), Gaps = 26/471 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T +VC CGY ++ G C C + + + V T E+ +P++L
Sbjct: 5 KTTFVCQKCGYQSPKYLGRCPNCSAWSSFVEEVEVTEVKNARVSLTG-----EKTKPIKL 59
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
EV+ +++ + + +E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ +A
Sbjct: 60 KEVD----SINYARTKTKM--DEFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLA 113
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
D V+YVSGEES EQI R++R+ E +LY+ T++++I +V+ ++P L
Sbjct: 114 D------NGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQNIRAEVEKINPDFL 167
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
+IDSIQT+ ++ G + QV+E T+ L++ AK NI + GHVTK G +AGPR+LE
Sbjct: 168 VIDSIQTIMSPEISSVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTLAGPRMLE 227
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS++FL E+ +D
Sbjct: 228 HMVDTVLYFEGERHHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLAD 287
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
+ G A+ V M+GSR L E+QAL R G+ +R +I++VL K+ GL
Sbjct: 288 A---TGSAIVVTMEGSRPILAEVQALVTPTVFGNARRTTTGLDFNRVSLIMAVLEKRCGL 344
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ +L GV L E A DLAVA AI SS+ E P AFIGEIGL GE+R V+R
Sbjct: 345 LLQNQDAYLKSAGGVKLNEPAIDLAVAVAIASSYREKPTNPQEAFIGEIGLTGEIRRVTR 404
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGF-EQMEFIGCKNLKEVINVVF 580
+E+R++ AKLG+ K PK+ SL+ + E + +G + +V+ VF
Sbjct: 405 IEQRINEAAKLGFTKIYAPKN---SLSGITLPETITVVGVMTVNDVLKAVF 452
>gi|332522328|ref|ZP_08398580.1| DNA repair protein RadA [Streptococcus porcinus str. Jelinkova 176]
gi|332313592|gb|EGJ26577.1| DNA repair protein RadA [Streptococcus porcinus str. Jelinkova 176]
Length = 455
Score = 355 bits (911), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 198/471 (42%), Positives = 290/471 (61%), Gaps = 24/471 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+ +VC +CGY ++ G C C + + E E ++ + E+ +PV+L
Sbjct: 5 KATFVCQECGYHSPKYLGRCPNCSAWSSFV-----EEVEVQELKNARVSLTGEKSRPVKL 59
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
+V+ L++ + + +E RVLGGG+VPGSL+LIGGDPG+GKSTLLLQ++ +A
Sbjct: 60 KDVDN----LNYSRTQTNM--DEFNRVLGGGVVPGSLILIGGDPGIGKSTLLLQVSTQLA 113
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+ V+YVSGEES EQI R++R+ E +LY+ T++++I +++ + P L
Sbjct: 114 N------KGTVLYVSGEESAEQIKLRSERLGEIDNEFYLYAETNMQEIRIEIEKIQPDFL 167
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQT+ +G G + QV+E T+ L++ AK NI + GHVTK G IAGPR+LE
Sbjct: 168 IIDSIQTIMSPDSSGVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTIAGPRMLE 227
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V+NPS++FL E+
Sbjct: 228 HMVDTVLYFEGERHHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVTNPSQVFLEERLDG 287
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
+ G A+ V M+GSR L E+Q+L R G+ +R +I++VL K+ GL
Sbjct: 288 A---TGSAIVVTMEGSRPILAEVQSLVTPTVFGNARRTTTGLDFNRVSLIMAVLEKRCGL 344
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ +L GV L E A DLAVA AI SS+ E P AF+GEIGL GE+R V+R
Sbjct: 345 LLQNQDAYLKAAGGVKLDEPAIDLAVAVAIASSYKELPTNPQEAFLGEIGLTGEIRRVTR 404
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVFT 581
+E+R++ AKLG+ K VPK+A + L + +E +G + EV+ VF+
Sbjct: 405 IEQRINEAAKLGFTKIYVPKNALQGLDIP--QNIEVVGVSTVGEVLKAVFS 453
>gi|399055774|ref|ZP_10743424.1| DNA repair protein RadA [Brevibacillus sp. CF112]
gi|433543323|ref|ZP_20499733.1| DNA repair protein RadA [Brevibacillus agri BAB-2500]
gi|398046637|gb|EJL39231.1| DNA repair protein RadA [Brevibacillus sp. CF112]
gi|432185452|gb|ELK42943.1| DNA repair protein RadA [Brevibacillus agri BAB-2500]
Length = 455
Score = 355 bits (911), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 204/478 (42%), Positives = 290/478 (60%), Gaps = 39/478 (8%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKR---YSAGESDEGPV--VQRTWLP--QKPE 165
+T + C +CGY +W G C C S T+ A EG +++ +P Q
Sbjct: 5 KTKYACQECGYESPKWMGKCPGCNSWNTLVEEVTVKAAHRHEGLSGGTRQSAIPLTQVAS 64
Query: 166 EVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLL 225
E +P ++D I E+ RVLGGGLVPGSL+L+GGDPG+GKSTLLL
Sbjct: 65 EEEP-----------RMDTTI-------GELNRVLGGGLVPGSLILVGGDPGIGKSTLLL 106
Query: 226 QMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQ 285
Q + +A + + V+YVSGEES +QI RADR+ + T +F+ + D++ I + +
Sbjct: 107 QTSFALAH-----QGAKVLYVSGEESAKQIKLRADRLHMQTPPMFVLAENDLDLIEQHIN 161
Query: 286 PLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDI 345
+ P LIIDSIQTV+ V +AG + QV+E T+ L+R AK I + GHVTK G I
Sbjct: 162 QVDPHVLIIDSIQTVFHPAVQSAAGSVAQVREATAQLMRIAKGKGICTFIVGHVTKEGSI 221
Query: 346 AGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIF 405
AGPR+LEH+VDAVLY EGE+ +++R+LR+VKNRFGST+E+G+FEM GL+ V+NPS+IF
Sbjct: 222 AGPRMLEHMVDAVLYFEGERHNTFRILRAVKNRFGSTNEIGIFEMKDRGLEEVANPSEIF 281
Query: 406 LSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVS--RHVNGIQASRADMIISV 463
L+E+ +AG V M+G+R L+E+QAL S V+ R G+ R MI++V
Sbjct: 282 LAERPFG---VAGSTVVASMEGTRPVLVELQALVAPTSFVTPRRMATGVDHQRVAMIMAV 338
Query: 464 LMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGG 523
L K+ G+ LQ ++NV GV L E A DLA+A +I SSF + IGEIGL G
Sbjct: 339 LEKRMGMMLQNQDAYVNVAGGVRLDEPAVDLAIAVSIASSFRDHATNPHDVVIGEIGLTG 398
Query: 524 ELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGF-EQMEFIGCKNLKEVINVVF 580
E+R VSR+E+RV KLG+++ I+P EK++ L + ++ IG N+ + +N V
Sbjct: 399 EVRGVSRIEQRVREAHKLGFKRVIIP---EKNIRGLDAPDDIQVIGVSNIADALNEVI 453
>gi|15612667|ref|NP_240970.1| DNA repair protein RadA [Bacillus halodurans C-125]
gi|17433163|sp|Q9KGG1.1|RADA_BACHD RecName: Full=DNA repair protein RadA homolog; AltName: Full=DNA
repair protein Sms homolog
gi|10172716|dbj|BAB03823.1| DNA repair protein [Bacillus halodurans C-125]
Length = 457
Score = 355 bits (911), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 196/478 (41%), Positives = 300/478 (62%), Gaps = 35/478 (7%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTM-KRYSAGESDEGPVVQRTWLPQ-----KPE 165
+T ++C +CGY +W G C C+S +M + ++ ++ R+++ KP
Sbjct: 4 KKTKFMCQECGYESAKWMGKCPGCQSWNSMVEEFTEVKAKS----SRSYVTSGAGIAKP- 58
Query: 166 EVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLL 225
QP+ +E ++ + RI S E+ RVLGGG+VPGSLVL+GGDPG+GKSTLLL
Sbjct: 59 --QPITKVE-----REQEPRIDTSM---KELNRVLGGGIVPGSLVLVGGDPGIGKSTLLL 108
Query: 226 QMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQ 285
Q++A +AD+ V+Y+SGEESV+Q R+DR+ + ++ L++ + TD+E I + +
Sbjct: 109 QLSARLADLKQ-----RVLYISGEESVKQTKIRSDRLGVLSDHLYVLAETDMEKIEQAIG 163
Query: 286 PLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDI 345
+ P +IIDSIQTVY + + G + QV+ECT++ +R AK T + + + GHVTK G I
Sbjct: 164 EVDPTLVIIDSIQTVYQDEITSAPGSVAQVRECTASFMRIAKTTGVAIFIVGHVTKQGAI 223
Query: 346 AGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIF 405
AGP++LEH+VD+VLY EGE+ +YR+LR+VKNRFGST+E+G+FEM + GL+ V+NPS+IF
Sbjct: 224 AGPKLLEHMVDSVLYFEGERHHTYRILRAVKNRFGSTNEMGIFEMKESGLEEVANPSEIF 283
Query: 406 LSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISV 463
L ++ S +AG V M+G+R L+E+QAL S R G+ +R ++++V
Sbjct: 284 LEDRSSG---VAGSTVVASMEGTRPVLVELQALISPTSFGNPRRMATGVDHNRISLLMAV 340
Query: 464 LMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGG 523
L K+ G+ LQ ++NV GV L E A DL +A +I SSF IGEIGL G
Sbjct: 341 LEKRVGMLLQNQDAYVNVAGGVRLDEPAIDLGIAVSIASSFRNQHTNPHEVVIGEIGLTG 400
Query: 524 ELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGF-EQMEFIGCKNLKEVINVVF 580
E+R VSR+++RV+ AKLG+++ I+P +K+L +E IG +++ + V
Sbjct: 401 EVRRVSRIDQRVNEAAKLGFKRVIIP---DKNLGGWTIPSTIEVIGVSTVQDALEVTL 455
>gi|332981036|ref|YP_004462477.1| DNA repair protein RadA [Mahella australiensis 50-1 BON]
gi|332698714|gb|AEE95655.1| DNA repair protein RadA [Mahella australiensis 50-1 BON]
Length = 450
Score = 355 bits (911), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 197/455 (43%), Positives = 280/455 (61%), Gaps = 35/455 (7%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTM--KRYSAGESDEGPVVQRTWLPQKPEEVQPV 170
++N+VC CGY +W G C C TM + Y+A + ++G +KP + +
Sbjct: 5 KSNYVCQACGYVSPKWMGKCPGCGQWNTMVEEIYTAPQPNKG------ISDEKPLALNSI 58
Query: 171 RLLEVNK---GMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQM 227
+++ + G+K+LD RVLGGG+V SLVL+GGDPG+GKSTLL+QM
Sbjct: 59 AIVDDERYASGIKELD--------------RVLGGGIVKASLVLVGGDPGIGKSTLLMQM 104
Query: 228 AAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPL 287
A H V+YVSGEES +QI R+ R+ I L +Y+ TD++ I ++ +
Sbjct: 105 AG-----HAATSGLKVLYVSGEESPQQIKLRSLRLGITDPGLLIYAQTDLDVIEQQAHSI 159
Query: 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAG 347
P +I+DSIQTVY ++ + G + QV+E T+ L+R AK T I V + GHVTK G IAG
Sbjct: 160 MPDIMIVDSIQTVYDPELSSAPGSVSQVREATARLMRLAKGTGITVFIVGHVTKEGAIAG 219
Query: 348 PRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLS 407
PRVLEH+VD VLY EGE+ +YR+LR+VKNRFGST+E+GVFEM GL+ VSNPS++ LS
Sbjct: 220 PRVLEHMVDTVLYFEGERHQAYRVLRAVKNRFGSTNEIGVFEMHDAGLREVSNPSEVMLS 279
Query: 408 EQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVLM 465
+ ++ G AV M+G+R L+EIQAL + R GI +R M+++VL
Sbjct: 280 DHQQNA---TGSAVVCSMEGTRPVLVEIQALISPTAFGMPRRMATGIDYNRVVMLMAVLE 336
Query: 466 KQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGEL 525
K+AGL LQ ++NV G+ L E A DL + AI SSF E P+ + FIGE+GL GE+
Sbjct: 337 KRAGLMLQNQDAYVNVAGGLKLDEPAADLGIIMAIASSFREKPVNGLMVFIGEVGLTGEI 396
Query: 526 RMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLG 560
R VSR+++R++ A++G+ C+VP + K L G
Sbjct: 397 RAVSRLDQRLNECARMGFTHCMVPAANSKDLRKYG 431
>gi|297528455|ref|YP_003669730.1| DNA repair protein RadA [Geobacillus sp. C56-T3]
gi|297251707|gb|ADI25153.1| DNA repair protein RadA [Geobacillus sp. C56-T3]
Length = 457
Score = 355 bits (911), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 196/443 (44%), Positives = 272/443 (61%), Gaps = 20/443 (4%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWL-PQKPEEVQPV 170
+T +VC +CGY +W G C C++ ++ E P V+ +L ++ +PV
Sbjct: 4 KKTKFVCQECGYESAKWLGRCPGCQTWNSLVEEI---EQEKPTVRGAFLHSERAGSAKPV 60
Query: 171 RLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAI 230
+ V + P E+ RVLGGG+V GSLVLIGGDPG+GKSTLLLQ +A
Sbjct: 61 PITAVEAVQE------PRMKTNSAELDRVLGGGIVKGSLVLIGGDPGIGKSTLLLQTSAQ 114
Query: 231 IADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPR 290
+A V+YVSGEESV+Q+ RA R+ + L++ + D+E IV V+ + P
Sbjct: 115 LA-----AAGHQVLYVSGEESVKQVKLRAGRLRAECDRLYVLAEADLEYIVAAVETVQPA 169
Query: 291 ALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRV 350
+IIDSIQTVY ++ + G + QV+ECT+ L++ AK I + + GHVTK G IAGPR+
Sbjct: 170 CVIIDSIQTVYRTDISSAPGSVAQVRECTAELMKLAKTKGIAIFIVGHVTKEGAIAGPRL 229
Query: 351 LEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQH 410
LEH+VD VLY EGE+ +YR+LR+VKNRFGST+E+G+FEM +GL+ V NPS++FL E+
Sbjct: 230 LEHMVDTVLYFEGERHHTYRILRAVKNRFGSTNEIGIFEMRDIGLKEVENPSEVFLEER- 288
Query: 411 SDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVLMKQA 468
S AG V M+G+R L+EIQAL S R G+ +R ++++VL K+
Sbjct: 289 --SRGAAGSTVVAAMEGTRPVLVEIQALVSPTSFGNPRRMATGLDHNRVSLLMAVLEKRV 346
Query: 469 GLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMV 528
GL LQ +L V GV L E A DLAVA +I SSF + P IGE+GL GE+R V
Sbjct: 347 GLLLQNQDAYLKVAGGVKLDEPAIDLAVAVSIASSFRDRPTNPADVIIGEVGLTGEVRRV 406
Query: 529 SRMEKRVSTVAKLGYRKCIVPKS 551
SR+E+RV KLG+ + IVPK+
Sbjct: 407 SRIEQRVQEAVKLGFSRIIVPKN 429
>gi|313887365|ref|ZP_07821056.1| DNA repair protein RadA [Porphyromonas asaccharolytica PR426713P-I]
gi|312923284|gb|EFR34102.1| DNA repair protein RadA [Porphyromonas asaccharolytica PR426713P-I]
Length = 474
Score = 355 bits (911), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 194/486 (39%), Positives = 290/486 (59%), Gaps = 36/486 (7%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSA------GESDEGPVVQR--------- 157
+T + CS CG T +W G C C+ T++ A G + +QR
Sbjct: 5 KTIYKCSACGATYSRWQGQCNECQEWNTIEEQLAQPTTPSGRTTPAQEIQRKLTQIHEGA 64
Query: 158 TWLPQKPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPG 217
TW EEV+P++ +E ++ + R+ L E+ R+LGGGLVPGS L+GG+PG
Sbjct: 65 TWNGLHSEEVRPIQQIEGSE-----ESRV---DLHDEELNRLLGGGLVPGSFTLLGGEPG 116
Query: 218 VGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDI 277
+GKSTL+ Q ++ L YVSGEES +Q+ RADR+ I +E+ +Y TD+
Sbjct: 117 IGKSTLIFQTVLRCPELKTL-------YVSGEESAQQLKLRADRIGIHSEQCLIYCDTDL 169
Query: 278 EDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAG 337
++I+ K ++P L+IDSIQTV S G + Q+KEC + LL FAK + IPV++ G
Sbjct: 170 DNILLKALQIAPDLLVIDSIQTVTTARSESSPGSISQIKECANLLLHFAKSSGIPVIVIG 229
Query: 338 HVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQA 397
H+ K G IAGP++LEH VD VL EG+K YR+LRS KNRFGSTD+LG++EM+ GL A
Sbjct: 230 HINKEGSIAGPKILEHTVDTVLQFEGDKQHLYRILRSHKNRFGSTDDLGIYEMNSSGLVA 289
Query: 398 VSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQAS 455
VSNPS+ +S ++E L+G+ VA ++G R +IE QAL S + R G
Sbjct: 290 VSNPSEHLIS---GNTEGLSGVVVACAVEGIRPIMIETQALVSSAIYNNPQRSTTGFDLR 346
Query: 456 RADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAF 515
R +M+++VL K+AG KL + +FLN+ G+ + +TA DLAV A+ SS L+ +P+
Sbjct: 347 RLNMLLAVLEKRAGFKLIQKDVFLNITGGIKINDTAVDLAVLCAVLSSNLDIAVPSKTCM 406
Query: 516 IGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEV 575
GE+GL GE+R VSR+E+R++ +LG+ + ++PK+ KSL ++ +E + C +
Sbjct: 407 TGEVGLAGEIRAVSRIERRIAEAHRLGFTRILIPKANAKSLQQRSYD-IEIVPCDRVDHA 465
Query: 576 INVVFT 581
+F+
Sbjct: 466 FRTLFS 471
>gi|227545185|ref|ZP_03975234.1| DNA repair protein RadA [Lactobacillus reuteri CF48-3A]
gi|338203860|ref|YP_004650005.1| DNA repair protein RadA [Lactobacillus reuteri SD2112]
gi|227184831|gb|EEI64902.1| DNA repair protein RadA [Lactobacillus reuteri CF48-3A]
gi|336449100|gb|AEI57715.1| DNA repair protein RadA [Lactobacillus reuteri SD2112]
Length = 457
Score = 355 bits (911), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 195/471 (41%), Positives = 287/471 (60%), Gaps = 30/471 (6%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTW----LPQKPEEVQ 168
RT +VC +CGY ++ G C C T+ E+ P + T L KP+++
Sbjct: 5 RTQYVCQNCGYNSPRYLGRCPNCGEWNTLVEEQV-EASSAPTKKATTTLTGLVAKPQKIN 63
Query: 169 PVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMA 228
+ E + +L NE+ RVLGGG+VPGSL+LIGGDPG+GKSTLLLQ++
Sbjct: 64 EIDSTETPRVKTKL-----------NELNRVLGGGIVPGSLILIGGDPGIGKSTLLLQVS 112
Query: 229 AIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLS 288
++D H V+YVSGEES QI RA+R+ +A ++ ++Y T+++ I + ++ L
Sbjct: 113 GQLSDEH-----HRVLYVSGEESGTQIKMRAERLKVAGDDFYVYPETNMDSIRDTIRDLK 167
Query: 289 PRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGP 348
P ++IDS+QT+ V+ + G + Q++E T+ L++ AK NI + + GHVTK G IAGP
Sbjct: 168 PEYVVIDSVQTMQATDVSSAIGSVSQIREVTAQLMQIAKSNNITIFVVGHVTKGGAIAGP 227
Query: 349 RVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSE 408
++LEH+VD VLY EG+ +YR+LRSVKNRFGST+ELG+FEM GL V NPS+IFL E
Sbjct: 228 KILEHMVDTVLYFEGDLHHTYRILRSVKNRFGSTNELGIFEMHTNGLTEVKNPSEIFLEE 287
Query: 409 QHSDSEFLAGLAVAVIMDGSRSFLIEIQAL---CVSGSTVSRHVNGIQASRADMIISVLM 465
+ D+ G AV V ++G+R L+EIQAL V G+ R G+ +R +I++VL
Sbjct: 288 RLHDA---TGSAVVVSLEGTRPILVEIQALVTPTVYGN-AQRTATGLSRNRVSLIMAVLE 343
Query: 466 KQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGEL 525
K+A L LQ +L GV L E A DLA+A +I SS+ + AF+GE+GL GE+
Sbjct: 344 KRANLMLQNQDAYLKAAGGVKLDEPAIDLAIAVSIASSYRDKGTKPTDAFVGEVGLTGEI 403
Query: 526 RMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVI 576
R V+R+E+RV+ KLG+++ +PK+ K ++ +G LKE +
Sbjct: 404 RRVNRIEQRVAEAEKLGFKRIFIPKNNLKGWKP--STNIQVVGVSTLKEAL 452
>gi|261417580|ref|YP_003251262.1| DNA repair protein RadA [Geobacillus sp. Y412MC61]
gi|261374037|gb|ACX76780.1| DNA repair protein RadA [Geobacillus sp. Y412MC61]
Length = 484
Score = 355 bits (911), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 200/452 (44%), Positives = 276/452 (61%), Gaps = 23/452 (5%)
Query: 104 GTRKKGKANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWL-PQ 162
G R K +T +VC +CGY +W G C C++ ++ E P V+ +L +
Sbjct: 24 GLRSMAK-KKTKFVCQECGYESAKWLGRCPGCQTWNSLVEEI---EQEKPTVRGAFLHSE 79
Query: 163 KPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKST 222
+ +PV + V + P E+ RVLGGG+V GSLVLIGGDPG+GKST
Sbjct: 80 RAGSAKPVPITAVEAVQE------PRMKTNSAELDRVLGGGIVKGSLVLIGGDPGIGKST 133
Query: 223 LLLQMAAIIADV-HDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIV 281
LLLQ +A +A H V+YVSGEESV+Q+ RA R+ + L++ + D+E IV
Sbjct: 134 LLLQTSAQLAAAGHQ------VLYVSGEESVKQVKLRAGRLRAECDRLYVLAEADLEYIV 187
Query: 282 EKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTK 341
V+ + P +IIDSIQTVY ++ + G + QV+ECT+ L++ AK I + + GHVTK
Sbjct: 188 AAVETVQPACVIIDSIQTVYRTDISSAPGSVAQVRECTAELMKLAKTKGIAIFIVGHVTK 247
Query: 342 SGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNP 401
G IAGPR+LEH+VD VLY EGE+ +YR+LR+VKNRFGST+E+G+FEM +GL+ V NP
Sbjct: 248 EGAIAGPRLLEHMVDTVLYFEGERHHTYRILRAVKNRFGSTNEIGIFEMRDIGLKEVENP 307
Query: 402 SKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADM 459
S++FL E+ S AG V M+G+R L+EIQAL S R G+ +R +
Sbjct: 308 SEVFLEER---SRGAAGSTVVAAMEGTRPVLVEIQALVSPTSFGNPRRMATGLDHNRVSL 364
Query: 460 IISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEI 519
+++VL K+ GL LQ +L V GV L E A DLAVA +I SSF + P IGE+
Sbjct: 365 LMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAVAVSIASSFRDRPTNPADVIIGEV 424
Query: 520 GLGGELRMVSRMEKRVSTVAKLGYRKCIVPKS 551
GL GE+R VSR+E+RV KLG+ + IVPK+
Sbjct: 425 GLTGEVRRVSRIEQRVQEAVKLGFSRIIVPKN 456
>gi|330995257|ref|ZP_08319168.1| DNA repair protein RadA [Paraprevotella xylaniphila YIT 11841]
gi|329575974|gb|EGG57494.1| DNA repair protein RadA [Paraprevotella xylaniphila YIT 11841]
Length = 474
Score = 355 bits (911), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 200/484 (41%), Positives = 296/484 (61%), Gaps = 29/484 (5%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVR 171
++T +VC++CG +W G C AC T K ++ + +V + P E P+R
Sbjct: 4 DKTVYVCANCGQESPKWVGRCPACGEWNTFKEFTVRKESASAIVSGGFHQALPGE--PLR 61
Query: 172 LLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAII 231
+ G D P + E+ RVLGGGLVPGSLVL+GG+PG+GKSTL+LQ +
Sbjct: 62 RRPIPVGQIVTDEE-PRLDMHDEELNRVLGGGLVPGSLVLLGGEPGIGKSTLVLQTVLKM 120
Query: 232 ADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIAT------EELFLYSS-------TDIE 278
D V+YVSGEES Q+ RADR++ +E FL S T ++
Sbjct: 121 TDKR-------VLYVSGEESARQLKLRADRLVPRAGGKADGQEGFLSRSSCMVVCETSLD 173
Query: 279 DIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGH 338
I V+ P+ ++IDSIQT+ V S G + QV+EC + LL+FAK++NIPV+L GH
Sbjct: 174 QIFLHVRNEQPQLVVIDSIQTIMTEAVDSSPGSISQVRECAALLLKFAKESNIPVILIGH 233
Query: 339 VTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAV 398
+ K G +AGP+VLEHIVDAVL EG++ YR+LRS+KNRFGST ELG++EM Q GL+ V
Sbjct: 234 INKEGTLAGPKVLEHIVDAVLQFEGDQHYMYRILRSIKNRFGSTAELGIYEMRQDGLRQV 293
Query: 399 SNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASR 456
SNPS++ L+E H E L+G+A++ ++G R FLIE QAL + + T R G R
Sbjct: 294 SNPSELLLTENH---EGLSGVAISSAIEGVRPFLIETQALVSTAAYGTPQRSATGFDLRR 350
Query: 457 ADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFI 516
+M+++VL K+ G KL + +FLN+ G+ +T+ A DL+V +A+ SS ++ I +G+
Sbjct: 351 LNMLLAVLEKRVGFKLAQKDVFLNIAGGLKVTDPAIDLSVISAVLSSNVDTGIESGVCMA 410
Query: 517 GEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVI 576
GE+GL GE+R V+R+E+RV+ AKLG+R+ IVP+ + T ++E + + ++E +
Sbjct: 411 GEVGLSGEIRPVNRIEQRVAEAAKLGFRRMIVPRHNLQGFDTSKL-KIELVPVRKVEEAL 469
Query: 577 NVVF 580
+F
Sbjct: 470 RALF 473
>gi|431387209|ref|ZP_19511572.1| DNA repair protein RadA [Enterococcus faecium E1627]
gi|430580766|gb|ELB19232.1| DNA repair protein RadA [Enterococcus faecium E1627]
Length = 456
Score = 355 bits (911), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 204/477 (42%), Positives = 288/477 (60%), Gaps = 30/477 (6%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQP 169
K ++ +VC +CGY ++ G C C TM E ++ +RT E+ +P
Sbjct: 3 KKSKVQFVCQNCGYVSPKFLGRCPNCGKWNTM----VEEIEQDTTDRRTRTSLTGEKAKP 58
Query: 170 VRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAA 229
++ +V + + + RI E+ RVLGGG+VPGS+VLIGGDPG+GKSTLLLQ++
Sbjct: 59 TKIADV---VPKKEPRIKTKL---EELNRVLGGGVVPGSMVLIGGDPGIGKSTLLLQVSQ 112
Query: 230 IIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSP 289
+A + V+YVSGEES EQI RA+R+ E +LY+ TD+ +I ++ +SP
Sbjct: 113 QLAAIG-----GKVLYVSGEESAEQIKLRAERLGSINTEFYLYAETDMNEISRAIEHISP 167
Query: 290 RALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPR 349
+IIDSIQT+ + AG + QV+E T+ LL+ AK I + + GHVTK G IAGPR
Sbjct: 168 DYVIIDSIQTMTQPDITSVAGSVSQVRETTAELLKIAKTNGIAIFIVGHVTKEGSIAGPR 227
Query: 350 VLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQ 409
+LEH+VD VLY EGE+ S+R+LR+VKNRFGST+E+G+FEM + GL+ V+NPS+IFL E+
Sbjct: 228 MLEHMVDTVLYFEGEQHHSFRILRAVKNRFGSTNEIGIFEMHEHGLEEVANPSQIFLEER 287
Query: 410 HSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMKQ 467
+ G A+ V M+G+R L+EIQAL + R G+ +R +I++VL K+
Sbjct: 288 LDGA---TGSAIVVAMEGTRPILVEIQALVTPTTFGNAKRTTTGLDFNRVSLIMAVLEKR 344
Query: 468 AGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRM 527
AGL LQ +L GV L E A DLA+A +I SS+ E FIGEIGL GE+R
Sbjct: 345 AGLLLQNQDAYLKAAGGVKLNEPAIDLAIAVSIASSYKEKGTQPTECFIGEIGLTGEIRR 404
Query: 528 VSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGF----EQMEFIGCKNLKEVINVVF 580
VS +E+RV V KLG+ K +PK+ LG + +E +G L E + VF
Sbjct: 405 VSHIEQRVKEVQKLGFTKVYLPKN------NLGNWEAPKGIEIVGVATLAETLKRVF 455
>gi|332299298|ref|YP_004441219.1| DNA repair protein RadA [Porphyromonas asaccharolytica DSM 20707]
gi|332176361|gb|AEE12051.1| DNA repair protein RadA [Porphyromonas asaccharolytica DSM 20707]
Length = 474
Score = 355 bits (911), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 194/486 (39%), Positives = 290/486 (59%), Gaps = 36/486 (7%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSA------GESDEGPVVQR--------- 157
+T + CS CG T +W G C C+ T++ A G + +QR
Sbjct: 5 KTIYKCSACGATYSRWQGQCNECQEWNTIEEQLAQPTTPSGRTTPAQEIQRKLTQIHEGA 64
Query: 158 TWLPQKPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPG 217
TW EEV+P++ +E ++ + R+ L E+ R+LGGGLVPGS L+GG+PG
Sbjct: 65 TWDGLHSEEVRPIQQIEGSE-----ESRV---DLHDEELNRLLGGGLVPGSFTLLGGEPG 116
Query: 218 VGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDI 277
+GKSTL+ Q ++ L YVSGEES +Q+ RADR+ I +E+ +Y TD+
Sbjct: 117 IGKSTLIFQTVLRCPELKTL-------YVSGEESAQQLKLRADRIGIHSEQCLIYCDTDL 169
Query: 278 EDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAG 337
++I+ K ++P L+IDSIQTV S G + Q+KEC + LL FAK + IPV++ G
Sbjct: 170 DNILLKALQIAPDLLVIDSIQTVTTARSESSPGSISQIKECANLLLHFAKSSGIPVIVIG 229
Query: 338 HVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQA 397
H+ K G IAGP++LEH VD VL EG+K YR+LRS KNRFGSTD+LG++EM+ GL A
Sbjct: 230 HINKEGSIAGPKILEHTVDTVLQFEGDKQHLYRILRSHKNRFGSTDDLGIYEMNSSGLVA 289
Query: 398 VSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQAS 455
VSNPS+ +S ++E L+G+ VA ++G R +IE QAL S + R G
Sbjct: 290 VSNPSEHLIS---GNTEGLSGVVVACAVEGIRPIMIETQALVSSAIYNNPQRSTTGFDLR 346
Query: 456 RADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAF 515
R +M+++VL K+AG KL + +FLN+ G+ + +TA DLAV A+ SS L+ +P+
Sbjct: 347 RLNMLLAVLEKRAGFKLIQKDVFLNITGGIKINDTAVDLAVLCAVLSSNLDIAVPSKTCM 406
Query: 516 IGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEV 575
GE+GL GE+R VSR+E+R++ +LG+ + ++PK+ KSL ++ +E + C +
Sbjct: 407 TGEVGLAGEIRAVSRIERRIAEAHRLGFTRILIPKANAKSLQQRSYD-IEIVPCDRVDHA 465
Query: 576 INVVFT 581
+F+
Sbjct: 466 FRTLFS 471
>gi|319765238|ref|YP_004130739.1| DNA repair protein RadA [Geobacillus sp. Y412MC52]
gi|317110104|gb|ADU92596.1| DNA repair protein RadA [Geobacillus sp. Y412MC52]
Length = 472
Score = 355 bits (911), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 199/451 (44%), Positives = 275/451 (60%), Gaps = 21/451 (4%)
Query: 104 GTRKKGKANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWL-PQ 162
G R K +T +VC +CGY +W G C C++ ++ E P V+ +L +
Sbjct: 12 GLRSMAK-KKTKFVCQECGYESAKWLGRCPGCQTWNSLVEEI---EQEKPTVRGAFLHSE 67
Query: 163 KPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKST 222
+ +PV + V + P E+ RVLGGG+V GSLVLIGGDPG+GKST
Sbjct: 68 RAGSAKPVPITAVEAVQE------PRMKTNSAELDRVLGGGIVKGSLVLIGGDPGIGKST 121
Query: 223 LLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVE 282
LLLQ +A +A V+YVSGEESV+Q+ RA R+ + L++ + D+E IV
Sbjct: 122 LLLQTSAQLA-----AAGHQVLYVSGEESVKQVKLRAGRLRAECDRLYVLAEADLEYIVA 176
Query: 283 KVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKS 342
V+ + P +IIDSIQTVY ++ + G + QV+ECT+ L++ AK I + + GHVTK
Sbjct: 177 AVETVQPACVIIDSIQTVYRTDISSAPGSVAQVRECTAELMKLAKTKGIAIFIVGHVTKE 236
Query: 343 GDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPS 402
G IAGPR+LEH+VD VLY EGE+ +YR+LR+VKNRFGST+E+G+FEM +GL+ V NPS
Sbjct: 237 GAIAGPRLLEHMVDTVLYFEGERHHTYRILRAVKNRFGSTNEIGIFEMRDIGLKEVENPS 296
Query: 403 KIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMI 460
++FL E+ S AG V M+G+R L+EIQAL S R G+ +R ++
Sbjct: 297 EVFLEER---SRGAAGSTVVAAMEGTRPVLVEIQALVSPTSFGNPRRMATGLDHNRVSLL 353
Query: 461 ISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIG 520
++VL K+ GL LQ +L V GV L E A DLAVA +I SSF + P IGE+G
Sbjct: 354 MAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAVAVSIASSFRDRPTNPADVIIGEVG 413
Query: 521 LGGELRMVSRMEKRVSTVAKLGYRKCIVPKS 551
L GE+R VSR+E+RV KLG+ + IVPK+
Sbjct: 414 LTGEVRRVSRIEQRVQEAVKLGFSRIIVPKN 444
>gi|357045379|ref|ZP_09107015.1| DNA repair protein RadA [Paraprevotella clara YIT 11840]
gi|355531577|gb|EHH00974.1| DNA repair protein RadA [Paraprevotella clara YIT 11840]
Length = 474
Score = 355 bits (910), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 196/487 (40%), Positives = 296/487 (60%), Gaps = 35/487 (7%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQ---RTWLPQKPEEVQ 168
++T +VC++CG +W G C AC T K ++ + V R LP +P +
Sbjct: 4 DKTVYVCANCGQESPKWVGRCPACGEWNTFKEFTVRKESVSAAVPGGFRQALPGEPLRRR 63
Query: 169 PVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMA 228
P+ + ++ + P + E+ RVLGGGLVPGSLVL+GG+PG+GKSTL+LQ
Sbjct: 64 PIPVGQIVTDEE------PRLDMHDEELNRVLGGGLVPGSLVLLGGEPGIGKSTLVLQTV 117
Query: 229 AIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMM-------------IATEELFLYSST 275
+ D V+YVSGEES Q+ RADR++ ++ + T
Sbjct: 118 LKMTDKR-------VLYVSGEESARQLKLRADRLVPRAGGKADGREGFLSRSSCMVVCET 170
Query: 276 DIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLL 335
++ I V+ P+ ++IDSIQT+ V S G + QV+EC + LL+FAK++NIPV+L
Sbjct: 171 SLDQIFLHVRNEQPQLVVIDSIQTIMTEAVDSSPGSISQVRECAALLLKFAKESNIPVIL 230
Query: 336 AGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGL 395
GH+ K G +AGP+VLEHIVDAVL EG++ YR+LRS+KNRFGST ELG++EM Q GL
Sbjct: 231 IGHINKEGTLAGPKVLEHIVDAVLQFEGDQHYMYRILRSIKNRFGSTAELGIYEMRQDGL 290
Query: 396 QAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQ 453
+ VSNPS++ L+E H E L+G+A++ ++G R FLIE QAL + + T R G
Sbjct: 291 RQVSNPSELLLTENH---EGLSGVAISSAIEGVRPFLIETQALVSTAAYGTPQRSATGFD 347
Query: 454 ASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGI 513
R +M+++VL K+ G KL + +FLN+ G+ +T+ A DL+V AA+ SS ++ I +G+
Sbjct: 348 LRRLNMLLAVLEKRVGFKLAQKDVFLNIAGGLKVTDPAIDLSVVAAVLSSNVDTGIESGV 407
Query: 514 AFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLK 573
GE+GL GE+R V+R+E+RV+ AKLG+R+ IVP+ + T ++E + + ++
Sbjct: 408 CMAGEVGLSGEIRPVNRIEQRVAEAAKLGFRQMIVPRHNLQGFDTSKL-KIELVPVRKVE 466
Query: 574 EVINVVF 580
E + +F
Sbjct: 467 EALRALF 473
>gi|431742312|ref|ZP_19531206.1| DNA repair protein RadA [Enterococcus faecium E2039]
gi|430600314|gb|ELB37967.1| DNA repair protein RadA [Enterococcus faecium E2039]
Length = 456
Score = 355 bits (910), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 203/477 (42%), Positives = 286/477 (59%), Gaps = 30/477 (6%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQP 169
K ++ +VC +CGY ++ G C C TM E ++ +RT E+ +P
Sbjct: 3 KKSKVQFVCQNCGYVSPKFLGRCPNCGKWNTM----VEEIEQDTTDRRTRTSLTGEKAKP 58
Query: 170 VRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAA 229
++ +V + + P + E+ RVLGGG+VPGS+VLIGGDPG+GKSTLLLQ++
Sbjct: 59 TKIADV------VPKKEPRVKMKLEELNRVLGGGVVPGSMVLIGGDPGIGKSTLLLQVSQ 112
Query: 230 IIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSP 289
+A + V+YVSGEES EQI RA+R+ E +LY+ TD+ +I ++ +SP
Sbjct: 113 QLAAIG-----GKVLYVSGEESAEQIKLRAERLGSINTEFYLYAETDMNEISRAIEHISP 167
Query: 290 RALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPR 349
+IIDSIQT+ + AG + QV+E T+ LL+ AK I + + GHVTK G IAGPR
Sbjct: 168 DYVIIDSIQTMTQPDITSVAGSVSQVRETTAELLKIAKTNGIAIFIVGHVTKEGSIAGPR 227
Query: 350 VLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQ 409
+LEH+VD VLY EGE+ S+R+LR+VKNRFGST+E+G+FEM + GL+ V+NPS+IFL E+
Sbjct: 228 MLEHMVDTVLYFEGEQHHSFRILRAVKNRFGSTNEIGIFEMHEHGLEEVANPSQIFLEER 287
Query: 410 HSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQ 467
+ G A+ V M+G+R L+EIQAL R G+ +R +I++VL K+
Sbjct: 288 LDGA---TGSAIVVAMEGTRPILVEIQALVTPTMFGNAKRTTTGLDFNRVSLIMAVLEKR 344
Query: 468 AGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRM 527
AGL LQ +L GV L E A DLA+A +I SS+ E FIGEIGL GE+R
Sbjct: 345 AGLLLQNQDAYLKAAGGVKLNEPAIDLAIAVSIASSYKEKGTQPTECFIGEIGLTGEIRR 404
Query: 528 VSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGF----EQMEFIGCKNLKEVINVVF 580
VS +E+RV V KLG+ K +PK+ LG + +E +G L E + VF
Sbjct: 405 VSHIEQRVKEVQKLGFTKVYLPKN------NLGNWEAPKGIEIVGVATLAETLKRVF 455
>gi|429725644|ref|ZP_19260467.1| DNA repair protein RadA [Prevotella sp. oral taxon 473 str. F0040]
gi|429149353|gb|EKX92332.1| DNA repair protein RadA [Prevotella sp. oral taxon 473 str. F0040]
Length = 472
Score = 355 bits (910), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 197/485 (40%), Positives = 290/485 (59%), Gaps = 35/485 (7%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYS----AGESDEGPVVQRTWLPQKPEEVQ 168
+T +VC +CGY +W G C +C T K + A S V L + + +
Sbjct: 5 KTAYVCDNCGYDSPKWVGRCPSCGQWNTFKEVNISPVASPSRGAAAVVSAGLDR--QRSK 62
Query: 169 PVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMA 228
P RL E+N ++ E+ RVLGGG+VPGSL+L+GG+PG+GKSTLLLQ
Sbjct: 63 PQRLSEINATEEER------YDTHDAELNRVLGGGIVPGSLILLGGEPGIGKSTLLLQTV 116
Query: 229 AIIADVHDLGEPSPVVYVSGEESVEQIGNRADRM-----------MIATEELFLYSSTDI 277
++D ++YVSGEES QI RADR+ A EE L+ T +
Sbjct: 117 LRMSDRR-------ILYVSGEESERQIKLRADRLSTSPQTQGNPTTAAGEEPLLFCETRL 169
Query: 278 EDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAG 337
E I+E+V+ + P LI+DS+QT+ V S G + Q++EC +ALL++AK N+PVLL G
Sbjct: 170 EVILEQVKAVQPELLIVDSVQTMQTESVESSPGSVTQIRECATALLKYAKDNNVPVLLIG 229
Query: 338 HVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQA 397
H+TK G IAGP+VLEHIVD VL EG++ YR+LRS+KNRFGST ELG++EM+Q GL+
Sbjct: 230 HITKEGSIAGPKVLEHIVDCVLQFEGDRHYFYRILRSIKNRFGSTSELGIYEMNQSGLRP 289
Query: 398 VSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQAS 455
V NPS++ L++ E L+G+A+ ++G R FLIE QAL + + T R G
Sbjct: 290 VDNPSELLLTQ---GGEPLSGVAICAALEGVRPFLIETQALVSTAAYGTPQRSATGFDLR 346
Query: 456 RADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAF 515
R +M+++VL K+ G KL +FLN+ G+ +T+ A DL+V AA+ SS ++ PI +A
Sbjct: 347 RLNMLLAVLEKRVGFKLGAKDVFLNIAGGIRVTDPAIDLSVIAAVLSSNVDTPIDRSVAM 406
Query: 516 IGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEV 575
GE GL GE+R V+R+++R++ KLG+ + ++P+ KSL F +E + ++
Sbjct: 407 AGECGLSGEIRPVTRIDRRIAEAQKLGFTRFLLPEQNMKSLDRHQFTGIELVPVSRVEAA 466
Query: 576 INVVF 580
+ +F
Sbjct: 467 LRELF 471
>gi|288906271|ref|YP_003431493.1| DNA repair protein RadA [Streptococcus gallolyticus UCN34]
gi|288732997|emb|CBI14578.1| DNA repair protein RadA [Streptococcus gallolyticus UCN34]
Length = 453
Score = 355 bits (910), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 199/471 (42%), Positives = 283/471 (60%), Gaps = 26/471 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T ++C +CGY ++ G C C S + + + V T KP +++ V
Sbjct: 5 KTTFICQECGYHSPKYLGRCPNCSSWTSFVEEVEVQEVKNARVSLTGEKSKPTKLKDVSS 64
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
+ ++ +D E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ +A
Sbjct: 65 IHYSRTKTGMD-----------EFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSIQLA 113
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
D V+YVSGEES EQI R++R+ E +LY+ T+++ I +++ + P L
Sbjct: 114 D------KGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQAIRAQIEQIQPDFL 167
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQT+ ++G G + QV+E T+ L++ AK NI + GHVTK G +AGPR+LE
Sbjct: 168 IIDSIQTIMSPDISGVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGQLAGPRMLE 227
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS++FL E+
Sbjct: 228 HMVDTVLYFEGERHHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVINPSQVFLEERLDG 287
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
+ G A+ V M+GSR L E+QAL R G+ +R +I++VL K+ GL
Sbjct: 288 A---TGSAIVVTMEGSRPILAEVQALVTPTVFGNAKRTTTGLDFNRVSLIMAVLEKRCGL 344
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ +L GV L E A DLAVA AI SS+ E P AFIGEIGL GE+R V+R
Sbjct: 345 LLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTNPQEAFIGEIGLTGEIRRVTR 404
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGF-EQMEFIGCKNLKEVINVVF 580
+E+R++ AKLG+ K PK+ SL+ + + ++ IG + EV+ VF
Sbjct: 405 IEQRINEAAKLGFTKVYAPKN---SLSDIDIPDNIQVIGVTTVGEVLKQVF 452
>gi|194468082|ref|ZP_03074068.1| DNA repair protein RadA [Lactobacillus reuteri 100-23]
gi|194452935|gb|EDX41833.1| DNA repair protein RadA [Lactobacillus reuteri 100-23]
Length = 457
Score = 354 bits (909), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 194/471 (41%), Positives = 287/471 (60%), Gaps = 30/471 (6%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTW----LPQKPEEVQ 168
RT +VC +CGY ++ G C C T+ E+ P + T L +P+++
Sbjct: 5 RTQYVCQNCGYNSPRYLGRCPNCGEWNTLVEEQV-EASSAPTKKATTTLTGLVARPQKIN 63
Query: 169 PVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMA 228
+ E + +L NE+ RVLGGG+VPGSL+LIGGDPG+GKSTLLLQ++
Sbjct: 64 EIDSTETPRVKTKL-----------NELNRVLGGGIVPGSLILIGGDPGIGKSTLLLQVS 112
Query: 229 AIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLS 288
++D H V+YVSGEES QI RA+R+ +A ++ ++Y T+++ I + ++ L
Sbjct: 113 GQLSDEH-----HRVLYVSGEESGTQIKMRAERLKVAGDDFYVYPETNMDSIRDTIRDLK 167
Query: 289 PRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGP 348
P ++IDS+QT+ V+ + G + Q++E T+ L++ AK NI + + GHVTK G IAGP
Sbjct: 168 PEYVVIDSVQTMQATDVSSAIGSVSQIREVTAQLMQIAKSNNITIFVVGHVTKGGAIAGP 227
Query: 349 RVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSE 408
++LEH+VD VLY EG+ +YR+LRSVKNRFGST+ELG+FEM GL V NPS+IFL E
Sbjct: 228 KILEHMVDTVLYFEGDLHHTYRILRSVKNRFGSTNELGIFEMHTNGLTEVKNPSEIFLEE 287
Query: 409 QHSDSEFLAGLAVAVIMDGSRSFLIEIQAL---CVSGSTVSRHVNGIQASRADMIISVLM 465
+ D+ G AV V ++G+R L+EIQAL V G+ R G+ +R +I++VL
Sbjct: 288 RLHDA---TGSAVVVSLEGTRPILVEIQALVTPTVYGN-AQRTATGLNRNRVSLIMAVLE 343
Query: 466 KQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGEL 525
K+A L LQ +L GV L E A DLA+A +I SS+ + AF+GE+GL GE+
Sbjct: 344 KRANLMLQNQDAYLKAAGGVKLDEPAIDLAIAVSIASSYRDKGTQPTDAFVGEVGLTGEI 403
Query: 526 RMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVI 576
R V+R+E+RV+ KLG+++ +PK+ K ++ +G LKE +
Sbjct: 404 RRVNRIEQRVTEAEKLGFKRIFIPKNNLKGWKP--STNIQVVGVSTLKEAL 452
>gi|205372095|ref|ZP_03224912.1| DNA repair protein RadA [Bacillus coahuilensis m4-4]
Length = 458
Score = 354 bits (909), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 191/441 (43%), Positives = 274/441 (62%), Gaps = 22/441 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTM--KRYSAGESDEGPVVQRTWLPQKPEEVQPV 170
+T ++C +CGY +W G C +C TM + G++ G P P + + +
Sbjct: 5 KTKFMCQECGYESPKWMGRCPSCHQWNTMVEEVEIVGKAPRGAFQHSA--PSGPNKAEKI 62
Query: 171 RLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAI 230
+E + P E+ RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ+++
Sbjct: 63 TSIETTQE--------PRVKTKLRELNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSSQ 114
Query: 231 IADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPR 290
+A + + V+Y+SGEES++Q RA R+ I ++LF+++ T++E I ++ ++P
Sbjct: 115 LASMKE-----SVLYISGEESIKQTKLRATRLNINEDDLFVFAETNLEIISGTIEEMNPN 169
Query: 291 ALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRV 350
+I+DSIQTVY V + G + QV+ECT+ L+R AK I + + GHVTK G IAGPR+
Sbjct: 170 FVIVDSIQTVYHPNVTSAPGSVSQVRECTAELMRIAKTKGIAIFIVGHVTKEGSIAGPRL 229
Query: 351 LEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQH 410
LEH+VD VLY EGE+ SYR+LR+VKNRFGST+E+G+FEM + GL V NPS+IFL E+
Sbjct: 230 LEHMVDTVLYFEGERHHSYRILRAVKNRFGSTNEMGIFEMKEEGLDEVENPSEIFLEERS 289
Query: 411 SDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVLMKQA 468
S +G V M+G+R L+EIQAL S R G +R +++++VL K+
Sbjct: 290 GGS---SGSTVVASMEGTRPVLVEIQALISPTSFGNPRRMATGTDYNRVNLLMAVLEKRV 346
Query: 469 GLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMV 528
G+ LQ ++ V G+ L E A DLA+ +I SSF E P FIGE+GL GE+R V
Sbjct: 347 GMLLQNQDAYIKVAGGLKLDEPAIDLAIVISIASSFREKPTKATDCFIGEVGLTGEVRRV 406
Query: 529 SRMEKRVSTVAKLGYRKCIVP 549
SR+E+RV AKLG+ + I+P
Sbjct: 407 SRIEQRVQEAAKLGFERVILP 427
>gi|374320676|ref|YP_005073805.1| DNA repair protein RadA [Paenibacillus terrae HPL-003]
gi|357199685|gb|AET57582.1| DNA repair protein RadA [Paenibacillus terrae HPL-003]
Length = 457
Score = 354 bits (909), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 208/449 (46%), Positives = 283/449 (63%), Gaps = 27/449 (6%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQR---TWLPQKPEEVQP 169
+T + C++CGY +W+G C C++ +M E E V + + L + +P
Sbjct: 5 KTKFSCTECGYESPKWYGKCPGCQAWNSMV-----EETESVVKTQGMGSSLLTHSTKDKP 59
Query: 170 VRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAA 229
+ ++EV G + RI L+G+ +E+ RVLGGG+VPGSLVL+GGDPG+GKSTL+LQ +
Sbjct: 60 LPIIEVESGK---EARI-LTGI--DELNRVLGGGVVPGSLVLVGGDPGIGKSTLMLQTSN 113
Query: 230 IIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSP 289
+A V+YVSGEESV Q RADR+ + L++ T++E I E V L P
Sbjct: 114 ELALTG-----LRVLYVSGEESVRQTKLRADRLGALSPNLYVLCETNLETIEEAVDSLKP 168
Query: 290 RALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPR 349
L+IDSIQTVYL V + G + QV+ECTS +R AK I +L GHVTK G IAGPR
Sbjct: 169 EFLVIDSIQTVYLPEVTSAPGSVAQVRECTSRFMRIAKGLGIATVLVGHVTKEGAIAGPR 228
Query: 350 VLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQ 409
+LEH+VD VLY EGE+ +YRLLR+VKNRFGST+E+G+FEM++ GL+ VSNPS++FLSE+
Sbjct: 229 LLEHMVDCVLYFEGERHHTYRLLRAVKNRFGSTNEIGIFEMAESGLREVSNPSELFLSER 288
Query: 410 HSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVS--RHVNGIQASRADMIISVLMKQ 467
+AG V M+G+R L+E+QAL + S R GI R +II+VL K+
Sbjct: 289 PLG---VAGSTVVASMEGTRPVLVELQALIATTHFPSPRRMGTGIDHHRMGLIIAVLEKR 345
Query: 468 AGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRM 527
G+ LQ +LNV GV L E A DLA+A +I SSF + P GE+GL GE+R
Sbjct: 346 MGMFLQNQDAYLNVAGGVKLDEPAVDLAIAVSIASSFRDAPTKPYDVIFGEVGLTGEVRA 405
Query: 528 VSRMEKRVSTVAKLGYRKCIVPKSAEKSL 556
VSR E+RV KLG+++ I+P EKSL
Sbjct: 406 VSRAEQRVREAEKLGFKRVIMP---EKSL 431
>gi|218260895|ref|ZP_03475969.1| hypothetical protein PRABACTJOHN_01633 [Parabacteroides johnsonii
DSM 18315]
gi|218224317|gb|EEC96967.1| hypothetical protein PRABACTJOHN_01633 [Parabacteroides johnsonii
DSM 18315]
Length = 459
Score = 354 bits (908), Expect = 8e-95, Method: Compositional matrix adjust.
Identities = 199/470 (42%), Positives = 287/470 (61%), Gaps = 18/470 (3%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T +VCS+CG +W G C +C T + G V ++ +P+ PVR
Sbjct: 5 KTVYVCSNCGADSPKWIGKCPSCGEWNTYVEEIVAKEPAGKRVGTGFI--RPDGAGPVRP 62
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
+ + + + RI L E+ RVLGGGLV GSLVLIGG+PG+GKSTL+LQ +
Sbjct: 63 VLLRDITSEEETRIDLGD---QELNRVLGGGLVKGSLVLIGGEPGIGKSTLVLQTVLGLK 119
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+ L YVSGEES Q+ RADR+M + F+ T++E I + + + P L
Sbjct: 120 GLRTL-------YVSGEESSRQLKLRADRIMHENPDCFILCETNLEQIFVQTRNVQPDLL 172
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQT+Y V S G + QV+EC++A+L++AK++ PVLL GH+ K G IAGP+VLE
Sbjct: 173 IIDSIQTIYTEVVESSPGSVSQVRECSAAILKYAKESGTPVLLIGHINKEGSIAGPKVLE 232
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
HIVD VL EG++ YR+LRS+KNRFGST ELG++EM Q GL+ VSNPS++ L++ H
Sbjct: 233 HIVDTVLQFEGDQHYMYRILRSIKNRFGSTAELGIYEMRQDGLREVSNPSELLLTQNH-- 290
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
E L+G+A+A ++G R FLIE QAL S T R G R +M+++VL K+AG
Sbjct: 291 -EGLSGVAIAAAIEGIRPFLIETQALVSSAVYGTPQRSATGFDLRRMNMLLAVLEKRAGF 349
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
KL + +FLN+ G+ + + A DLAV +A+ SS L+ I GI GE+GL GE+R V+R
Sbjct: 350 KLIQKDVFLNIAGGLKVNDPAIDLAVISAVLSSSLDISIEPGICMCGEVGLSGEIRPVNR 409
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+E+R+ KLG+ + I+P + K T +M+ + + ++E +F
Sbjct: 410 IEQRILEAEKLGFSRIIIPHNNLKGFDTSKC-KMQIVQVRKVEEAFRQLF 458
>gi|259502660|ref|ZP_05745562.1| DNA repair protein RadA [Lactobacillus antri DSM 16041]
gi|259169305|gb|EEW53800.1| DNA repair protein RadA [Lactobacillus antri DSM 16041]
Length = 458
Score = 354 bits (908), Expect = 8e-95, Method: Compositional matrix adjust.
Identities = 196/474 (41%), Positives = 285/474 (60%), Gaps = 27/474 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRAC-ESVGTMKRYSAGESDEGPVVQRTWLP---QKPEEVQ 168
RT +VC +CGY+ ++ G C C E ++ ES P T L KP+++
Sbjct: 5 RTQYVCQNCGYSSRRYLGRCPNCGEWNSLVEEQVQSESKAAPTRATTTLTGLVAKPQKIG 64
Query: 169 PVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMA 228
+ E + +L NE+ RVLGGG+VPGSL+LIGGDPG+GKSTLLLQ++
Sbjct: 65 EINSKETPRVKTKL-----------NELNRVLGGGIVPGSLILIGGDPGIGKSTLLLQVS 113
Query: 229 AIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLS 288
++D H V+YVSGEES QI RA+R+ +A +E ++Y T+++ I E ++ L
Sbjct: 114 GQLSDEHH-----KVLYVSGEESGTQIKMRAERLGVAGDEFYVYPETNMDSIKETIRDLQ 168
Query: 289 PRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGP 348
P ++IDS+QT+ V+ + G + Q++E T+ L++ AK NI V + GHVTK G +AGP
Sbjct: 169 PEYVVIDSVQTMQATDVSSAIGSVSQIREVTAQLMQIAKSNNITVFVVGHVTKGGALAGP 228
Query: 349 RVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSE 408
++LEH+VD VLY EG+ +YR+LRSVKNRFGST+ELG+FEM GL V NPS+IFL E
Sbjct: 229 KILEHMVDTVLYFEGDLHHTYRILRSVKNRFGSTNELGIFEMHANGLSEVKNPSEIFLEE 288
Query: 409 QHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMK 466
+ D+ G +V V ++G+R L+EIQAL R G+ +R +I++VL K
Sbjct: 289 RLRDA---TGSSVVVSLEGTRPILVEIQALVTPTVYGNAQRTATGLSRNRVSLIMAVLEK 345
Query: 467 QAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELR 526
+A L LQ +L GV L E A DLA+A +I SS+ + AF+GE+GL GE+R
Sbjct: 346 RANLMLQNQDAYLKAAGGVKLDEPAIDLAIAVSIASSYRDKGTRPADAFVGEVGLTGEIR 405
Query: 527 MVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
V+R+E+RV+ KLG+ + VPK+ K +E +G L+E + +
Sbjct: 406 RVNRIEQRVAEAQKLGFERIFVPKNNLKGWTPPA--GIEVVGVTTLREALRLAL 457
>gi|227552725|ref|ZP_03982774.1| DNA repair protein RadA [Enterococcus faecium TX1330]
gi|227178125|gb|EEI59097.1| DNA repair protein RadA [Enterococcus faecium TX1330]
Length = 465
Score = 354 bits (908), Expect = 8e-95, Method: Compositional matrix adjust.
Identities = 205/477 (42%), Positives = 287/477 (60%), Gaps = 30/477 (6%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQP 169
K ++ +VC +CGY ++ G C C TM E ++ +RT E+ +P
Sbjct: 12 KKSKVQFVCQNCGYVSPKFLGRCPNCGKWNTM----VEEIEQDTTDRRTRTSLSGEKAKP 67
Query: 170 VRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAA 229
++ +V + + P E+ RVLGGG+VPGS+VLIGGDPG+GKSTLLLQ++
Sbjct: 68 TKIADV------VPKKEPRVKTKLEELNRVLGGGVVPGSMVLIGGDPGIGKSTLLLQVSQ 121
Query: 230 IIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSP 289
+A + GE V+YVSGEES EQI RA+R+ E +LY+ TD+ +I ++ +SP
Sbjct: 122 QLAAIG--GE---VLYVSGEESAEQIKLRAERLGSINTEFYLYAETDMNEISRAIEHISP 176
Query: 290 RALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPR 349
+IIDSIQT+ + AG + QV+E T+ LL+ AK I + + GHVTK G IAGPR
Sbjct: 177 DYVIIDSIQTMTQPDITSVAGSVSQVRETTAELLKIAKTNGIAIFIVGHVTKEGSIAGPR 236
Query: 350 VLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQ 409
+LEH+VD VLY EGE+ S+R+LR+VKNRFGST+E+G+FEM + GL+ V+NPS+IFL E+
Sbjct: 237 MLEHMVDTVLYFEGEQHHSFRILRAVKNRFGSTNEIGIFEMHEHGLEEVANPSQIFLEER 296
Query: 410 HSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQ 467
+ G A+ V M+G+R L+EIQAL R G+ +R +I++VL K+
Sbjct: 297 LDGA---TGSAIVVAMEGTRPILVEIQALVTPTMFGNAKRTTTGLDFNRVSLIMAVLEKR 353
Query: 468 AGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRM 527
AGL LQ +L GV L E A DLA+A +I SS+ E FIGEIGL GE+R
Sbjct: 354 AGLLLQNQDAYLKAAGGVKLNEPAIDLAIAVSIASSYKEKGTQPTECFIGEIGLTGEIRR 413
Query: 528 VSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGF----EQMEFIGCKNLKEVINVVF 580
VS +E+RV V KLG+ K +PK+ LG + +E +G L E + VF
Sbjct: 414 VSHIEQRVKEVQKLGFTKVYLPKN------NLGNWEAPKGIEIVGVATLAETLKRVF 464
>gi|169830064|ref|YP_001700222.1| DNA repair protein RadA [Lysinibacillus sphaericus C3-41]
gi|168994552|gb|ACA42092.1| DNA repair protein radA-like protein (DNA repair protein sms-like
protein) [Lysinibacillus sphaericus C3-41]
Length = 458
Score = 354 bits (908), Expect = 9e-95, Method: Compositional matrix adjust.
Identities = 197/479 (41%), Positives = 289/479 (60%), Gaps = 37/479 (7%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRAC-------ESVGTMKRYSAGESDEGPVVQRTWLPQKP 164
+T +VCS CGY +W G C C E V + + G V + +P
Sbjct: 4 KKTKFVCSGCGYESAKWMGRCPGCGEWNKMVEEVEVIAKGPRGAFQHSATVTQKAIPIIQ 63
Query: 165 EEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLL 224
E + G E+ RVLGGG+VPGSLVLIGGDPG+GKSTLL
Sbjct: 64 VEASEESRVATEMG----------------ELNRVLGGGIVPGSLVLIGGDPGIGKSTLL 107
Query: 225 LQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKV 284
LQ++A++++ + V+Y+SGEES+ Q RA+R+ + ++EL++YS T++E + + +
Sbjct: 108 LQVSALLSN-----KGHRVLYISGEESIRQTKLRAERLGVISQELYIYSETNLEFLNQTI 162
Query: 285 QPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGD 344
+ + P+ +I+DSIQTV+ V + G + QV+ECT+ L+R AK I + L GHVTK G
Sbjct: 163 EEVQPKFVIVDSIQTVFHPEVTSAPGSVSQVRECTAELMRIAKTKGIAIFLVGHVTKEGQ 222
Query: 345 IAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKI 404
IAGPR+LEH+VD VLY EGE+ ++R+LRS KNRFGST+E+ +FEM Q GL+ V NPS++
Sbjct: 223 IAGPRILEHMVDTVLYFEGERHHNHRILRSQKNRFGSTNEIAIFEMLQGGLKEVLNPSEL 282
Query: 405 FLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIIS 462
FL E+ S+ AG + M+G+R L+EIQ+L S + R G+ +R ++++
Sbjct: 283 FLQER---SQGAAGSTIVASMEGTRPILVEIQSLVTPTSFNYPKRMATGVDQNRVQLLMA 339
Query: 463 VLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLG 522
VL K+ GL LQ ++ V GV L E A DLAV +I SSF + + FIGE+GL
Sbjct: 340 VLEKRMGLMLQAQDAYIKVAGGVKLDEPAIDLAVLTSIVSSFKDQAVRATDCFIGEVGLT 399
Query: 523 GELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQ-MEFIGCKNLKEVINVVF 580
GE+R VSR+E+RV AKLG++K +P S ++ F Q +E +G + +K+ +N F
Sbjct: 400 GEVRRVSRIEQRVIEAAKLGFKKVFIPAS---NIGGWDFPQGIEIVGVETIKDALNACF 455
>gi|430821431|ref|ZP_19440040.1| DNA repair protein RadA [Enterococcus faecium E0045]
gi|430827140|ref|ZP_19445304.1| DNA repair protein RadA [Enterococcus faecium E0164]
gi|430829954|ref|ZP_19448023.1| DNA repair protein RadA [Enterococcus faecium E0269]
gi|430906539|ref|ZP_19484974.1| DNA repair protein RadA [Enterococcus faecium E1575]
gi|431215116|ref|ZP_19501163.1| DNA repair protein RadA [Enterococcus faecium E1620]
gi|431747400|ref|ZP_19536194.1| DNA repair protein RadA [Enterococcus faecium E2134]
gi|431766133|ref|ZP_19554629.1| DNA repair protein RadA [Enterococcus faecium E4215]
gi|430438483|gb|ELA48909.1| DNA repair protein RadA [Enterococcus faecium E0045]
gi|430444320|gb|ELA54175.1| DNA repair protein RadA [Enterococcus faecium E0164]
gi|430479272|gb|ELA56528.1| DNA repair protein RadA [Enterococcus faecium E0269]
gi|430554497|gb|ELA94099.1| DNA repair protein RadA [Enterococcus faecium E1575]
gi|430570122|gb|ELB09096.1| DNA repair protein RadA [Enterococcus faecium E1620]
gi|430606227|gb|ELB43585.1| DNA repair protein RadA [Enterococcus faecium E2134]
gi|430627203|gb|ELB63720.1| DNA repair protein RadA [Enterococcus faecium E4215]
Length = 456
Score = 354 bits (908), Expect = 9e-95, Method: Compositional matrix adjust.
Identities = 204/477 (42%), Positives = 287/477 (60%), Gaps = 30/477 (6%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQP 169
K ++ +VC +CGY ++ G C C TM E ++ +RT E+ +P
Sbjct: 3 KKSKVQFVCQNCGYVSPKFLGRCPNCGKWNTM----VEEIEQDTTDRRTRTSLTGEKAKP 58
Query: 170 VRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAA 229
++ +V + + + RI E+ RVLGGG+VPGS+VLIGGDPG+GKSTLLLQ++
Sbjct: 59 TKIADV---VPKKEPRIKTKL---EELNRVLGGGVVPGSMVLIGGDPGIGKSTLLLQVSQ 112
Query: 230 IIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSP 289
+A + V+YVSGEES EQI RA+R+ E +LY+ TD+ +I ++ +SP
Sbjct: 113 QLAAIG-----GKVLYVSGEESAEQIKLRAERLGSINTEFYLYAETDMNEISRAIEHISP 167
Query: 290 RALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPR 349
+IIDSIQT+ + AG + QV+E T+ LL+ AK I + + GHVTK G IAGPR
Sbjct: 168 DYVIIDSIQTMTQPDITSVAGSVSQVRETTAELLKIAKTNGIAIFIVGHVTKEGSIAGPR 227
Query: 350 VLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQ 409
+LEH+VD VLY EGE+ S+R+LR+VKNRFGST+E+G+FEM + GL+ V+NPS+IFL E+
Sbjct: 228 MLEHMVDTVLYFEGEQHHSFRILRAVKNRFGSTNEIGIFEMHEHGLEEVANPSQIFLEER 287
Query: 410 HSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQ 467
+ G A+ V M+G+R L+EIQAL R G+ +R +I++VL K+
Sbjct: 288 LDGA---TGSAIVVTMEGTRPILVEIQALVTPTMFGNAKRTTTGLDFNRVSLIMAVLEKR 344
Query: 468 AGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRM 527
AGL LQ +L GV L E A DLA+A +I SS+ E FIGEIGL GE+R
Sbjct: 345 AGLLLQNQDAYLKAAGGVKLNEPAIDLAIAVSIASSYKEKGTQPTECFIGEIGLTGEIRR 404
Query: 528 VSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGF----EQMEFIGCKNLKEVINVVF 580
VS +E+RV V KLG+ K +PK+ LG + +E +G L E + VF
Sbjct: 405 VSHIEQRVKEVQKLGFTKVYLPKN------NLGNWEAPKGIEIVGVATLAETLKRVF 455
>gi|423344120|ref|ZP_17321833.1| DNA repair protein RadA [Parabacteroides johnsonii CL02T12C29]
gi|409213640|gb|EKN06657.1| DNA repair protein RadA [Parabacteroides johnsonii CL02T12C29]
Length = 459
Score = 353 bits (907), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 199/470 (42%), Positives = 287/470 (61%), Gaps = 18/470 (3%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T +VCS+CG +W G C +C T + G V ++ +P+ PVR
Sbjct: 5 KTVYVCSNCGADSPKWIGKCPSCGEWNTYVEEIVAKEPAGKRVGAGFI--RPDGAGPVRP 62
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
+ + + + RI L E+ RVLGGGLV GSLVLIGG+PG+GKSTL+LQ +
Sbjct: 63 VLLRDITSEEETRIDLGD---QELNRVLGGGLVKGSLVLIGGEPGIGKSTLVLQTVLGLK 119
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+ L YVSGEES Q+ RADR+M + F+ T++E I + + + P L
Sbjct: 120 GLRTL-------YVSGEESSRQLKLRADRIMHENPDCFILCETNLEQIFVQTRNVQPDLL 172
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQT+Y V S G + QV+EC++A+L++AK++ PVLL GH+ K G IAGP+VLE
Sbjct: 173 IIDSIQTIYTEVVESSPGSVSQVRECSAAILKYAKESGTPVLLIGHINKEGSIAGPKVLE 232
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
HIVD VL EG++ YR+LRS+KNRFGST ELG++EM Q GL+ VSNPS++ L++ H
Sbjct: 233 HIVDTVLQFEGDQHYMYRILRSIKNRFGSTAELGIYEMRQDGLREVSNPSELLLTQNH-- 290
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
E L+G+A+A ++G R FLIE QAL S T R G R +M+++VL K+AG
Sbjct: 291 -EGLSGVAIAAAIEGIRPFLIETQALVSSAVYGTPQRSATGFDLRRMNMLLAVLEKRAGF 349
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
KL + +FLN+ G+ + + A DLAV +A+ SS L+ I GI GE+GL GE+R V+R
Sbjct: 350 KLIQKDVFLNIAGGLKVNDPAIDLAVISAVLSSSLDISIEPGICMCGEVGLSGEIRPVNR 409
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+E+R+ KLG+ + I+P + K T +M+ + + ++E +F
Sbjct: 410 IEQRILEAEKLGFSRIIIPHNNLKGFDTSKC-KMQIVQVRKVEEAFRQLF 458
>gi|257897349|ref|ZP_05677002.1| DNA repair protein RadA [Enterococcus faecium Com12]
gi|257833914|gb|EEV60335.1| DNA repair protein RadA [Enterococcus faecium Com12]
Length = 456
Score = 353 bits (907), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 203/477 (42%), Positives = 285/477 (59%), Gaps = 30/477 (6%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQP 169
K ++ +VC +CGY ++ G C C TM E ++ +RT E+ +P
Sbjct: 3 KKSKVQFVCQNCGYVSPKFLGRCPNCGKWNTM----VEEIEQDTTDRRTRTSLSGEKAKP 58
Query: 170 VRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAA 229
++ +V + + P E+ RVLGGG+VPGS+VLIGGDPG+GKSTLLLQ++
Sbjct: 59 TKIADV------VPKKEPRVKTKLEELNRVLGGGVVPGSMVLIGGDPGIGKSTLLLQVSQ 112
Query: 230 IIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSP 289
+A + V+YVSGEES EQI RA+R+ E +LY+ TD+ +I ++ +SP
Sbjct: 113 QLAAIG-----GKVLYVSGEESAEQIKLRAERLGSINTEFYLYAETDMNEISRAIEHISP 167
Query: 290 RALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPR 349
+IIDSIQT+ + AG + QV+E T+ LL+ AK I + + GHVTK G IAGPR
Sbjct: 168 DYVIIDSIQTMTQPDITSVAGSVSQVRETTAELLKIAKTNGIAIFIVGHVTKEGSIAGPR 227
Query: 350 VLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQ 409
+LEH+VD VLY EGE+ S+R+LR+VKNRFGST+E+G+FEM + GL+ V+NPS+IFL E+
Sbjct: 228 MLEHMVDTVLYFEGEQHHSFRILRAVKNRFGSTNEIGIFEMHEHGLEEVANPSQIFLEER 287
Query: 410 HSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQ 467
+ G A+ V M+G+R L+EIQAL R G+ +R +I++VL K+
Sbjct: 288 LDGA---TGSAIVVAMEGTRPILVEIQALVTPTMFGNAKRTTTGLDFNRVSLIMAVLEKR 344
Query: 468 AGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRM 527
AGL LQ +L GV L E A DLA+A +I SS+ E FIGEIGL GE+R
Sbjct: 345 AGLLLQNQDAYLKAAGGVKLNEPAIDLAIAVSIASSYKEKGTQPTECFIGEIGLTGEIRR 404
Query: 528 VSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGF----EQMEFIGCKNLKEVINVVF 580
VS +E+RV V KLG+ K +PK+ LG + +E +G L E + VF
Sbjct: 405 VSHIEQRVKEVQKLGFTKVYLPKN------NLGNWEAPKGIEIVGVATLAETLKRVF 455
>gi|225018376|ref|ZP_03707568.1| hypothetical protein CLOSTMETH_02323 [Clostridium methylpentosum
DSM 5476]
gi|224948794|gb|EEG30003.1| hypothetical protein CLOSTMETH_02323 [Clostridium methylpentosum
DSM 5476]
Length = 459
Score = 353 bits (907), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 195/469 (41%), Positives = 285/469 (60%), Gaps = 23/469 (4%)
Query: 116 WVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVV-QRTWLPQKPEEVQPVRLLE 174
+VC+ CGY +W G C C G + + P +R VQP
Sbjct: 8 YVCTACGYETPKWQGRCPNC---GEWNSFEQQVTVAPPAAGKRAPNISHASAVQP----- 59
Query: 175 VNKGMKQLDWRIPLSGLFG-NEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIAD 233
K + Q+D + + G E+ RV GGG+V GSLVL+ GDPG+GKSTLLLQ+ +
Sbjct: 60 --KSITQIDVKDEVRYTTGIAELDRVFGGGIVKGSLVLLSGDPGIGKSTLLLQICGV--- 114
Query: 234 VHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALI 293
LGE S ++YVSGEESV QI RA+R+ + +E L++ S T+++ I+ + P ++
Sbjct: 115 ---LGEQSDILYVSGEESVRQIKLRANRLGVNSENLYMISETNVDTILSTIMVHKPSLVM 171
Query: 294 IDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEH 353
IDSIQT+ L V S+G + QV+ECT+A + AK +IP+LL GHV K G+IAGP+VLEH
Sbjct: 172 IDSIQTMNLEAVQSSSGSVTQVRECTNAFMHLAKSEDIPILLVGHVNKDGNIAGPKVLEH 231
Query: 354 IVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDS 413
IVDAVLY EG++ SYR+LR+VKNR+GST+E+ VF+M GL V NPS + LSE+
Sbjct: 232 IVDAVLYFEGDRNLSYRILRAVKNRYGSTNEIAVFDMQDTGLCQVENPSAMLLSER---P 288
Query: 414 EFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGLK 471
+ ++G V+ +++GSR + E+QAL T R G +R +II+VL K+AG
Sbjct: 289 QGVSGTCVSSVIEGSRPIMAEVQALVTKTGFGTPRRMCTGFDYNRMSLIIAVLEKRAGYF 348
Query: 472 LQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRM 531
++N++ G+ L E A DL++A A+ SS + P+ + + GE+GL GE+R VS +
Sbjct: 349 FGTLDTYINIIGGLKLDEPAADLSIAVALISSLRDIPVEDTLIAFGELGLAGEIRSVSGV 408
Query: 532 EKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+KRV +LG+ KCI+P+ + KSL L ++E I N+++ I VF
Sbjct: 409 QKRVMEAQRLGFTKCILPRHSLKSLQDLESYEIEIIPVSNIRQAIAAVF 457
>gi|328958767|ref|YP_004376153.1| DNA repair protein RadA [Carnobacterium sp. 17-4]
gi|328675091|gb|AEB31137.1| DNA repair protein RadA [Carnobacterium sp. 17-4]
Length = 456
Score = 353 bits (907), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 205/476 (43%), Positives = 289/476 (60%), Gaps = 26/476 (5%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTMKR-YSAGESDEGPVVQRTWLPQKPEEVQ 168
K T +VC CGY +W G C C S M+ A ++D V T K E +Q
Sbjct: 3 KKKITKFVCQACGYESPKWMGRCPNCGSWNQMEEEIVADKNDRRSRVSMTGKTAKAEAIQ 62
Query: 169 PVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMA 228
+ + +V + +L E+ RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++
Sbjct: 63 DITVSKVPRVKTKL-----------KELNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVS 111
Query: 229 AIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLS 288
A ++ G V+YVSGEES QI RA+R+ + + ++Y TD+ I + ++ L
Sbjct: 112 A---QLNLAG--GKVLYVSGEESSSQIKMRANRLGVKGADFYIYPETDMGAIRQTIEDLK 166
Query: 289 PRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGP 348
P +IIDSIQT+ + G+ G + QV+E T+ LL+ AK NI + + GHVTK G IAGP
Sbjct: 167 PDYVIIDSIQTMNQADITGAIGSVSQVRESTADLLKIAKTNNIAIFIVGHVTKEGSIAGP 226
Query: 349 RVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSE 408
R+LEH+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM + GL V NPS++FL E
Sbjct: 227 RMLEHMVDTVLYFEGERHHTFRILRAVKNRFGSTNEIGIFEMREGGLVEVLNPSEMFLEE 286
Query: 409 QHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMK 466
+ S + G AV M+GSR L EIQ+L + R +G+ +R +I++VL K
Sbjct: 287 RLSGA---TGSAVVASMEGSRPILAEIQSLITPTAFGNARRTASGLDYNRVSLIMAVLEK 343
Query: 467 QAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELR 526
+AGL LQ +L GV L E A DLA+A ++ SS+ E FIGEIGL GE+R
Sbjct: 344 RAGLMLQNQDAYLKSAGGVKLDEPAIDLAIAISVASSYQEKETKETDCFIGEIGLTGEIR 403
Query: 527 MVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGF-EQMEFIGCKNLKEVINVVFT 581
VSR+E+RV+ AKLG+++ ++PK+ ++ F E +E IG + E I F+
Sbjct: 404 RVSRIEQRVNEAAKLGFKRIMIPKN---NIGGWTFPENIEVIGVMTIAEAIKKAFS 456
>gi|399029946|ref|ZP_10730597.1| DNA repair protein RadA [Flavobacterium sp. CF136]
gi|398072061|gb|EJL63293.1| DNA repair protein RadA [Flavobacterium sp. CF136]
Length = 453
Score = 353 bits (907), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 190/474 (40%), Positives = 295/474 (62%), Gaps = 32/474 (6%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQR----TWLPQKPEEVQ 168
+T++ C +CG +W G C AC+ T+ ++Q+ W + +
Sbjct: 5 KTSFFCQNCGTQYAKWQGQCNACKEWNTIAE---------EIIQKQEKVAWKSEPTSTSK 55
Query: 169 PVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMA 228
R L++N+ + R+ + E+ RVLGGGLVPGSL L+GG+PG+GKSTLLLQ++
Sbjct: 56 APRPLKINEIDSAQEIRMNTTD---GELNRVLGGGLVPGSLTLLGGEPGIGKSTLLLQIS 112
Query: 229 AIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLS 288
L P +YVSGEES +QI RA+R+ ++ ++ + T ++I ++++ +
Sbjct: 113 --------LKLPYKTLYVSGEESQKQIKMRAERITPNSDNCYILTETKTQNIFKQIEAIE 164
Query: 289 PRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGP 348
P +IIDSIQT++ + +AG + Q++E T+ L++FAK+TNIPV+L GH+TK G+IAGP
Sbjct: 165 PEIVIIDSIQTLHTDYIESTAGSISQIRETTAELIKFAKETNIPVILIGHITKDGNIAGP 224
Query: 349 RVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSE 408
++LEH+VD VL EG++ YR+LRS+KNRFGST ELG++EM GL+ VSNPS+I +S
Sbjct: 225 KILEHMVDTVLQFEGDRNHVYRILRSLKNRFGSTAELGIYEMLGSGLREVSNPSEILIS- 283
Query: 409 QHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMK 466
H D E ++G A+A M+G R +IEIQ+L + T R G A R +MI++VL K
Sbjct: 284 -HKDEE-MSGTAIATTMEGMRPLMIEIQSLVSTAVYGTPQRSTTGYNAKRLNMILAVLEK 341
Query: 467 QAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELR 526
+AG +L +FLNV G+++ + A DLAV AAI SS + P+ G F GE+GL GE+R
Sbjct: 342 RAGFRLGAKDVFLNVTGGISVDDPAIDLAVVAAILSSNEDIPVTKGFCFAGEVGLSGEIR 401
Query: 527 MVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
V+R+++R+ KLG+ V K + +L G ++E + +++V +++F
Sbjct: 402 PVNRVDQRIQEAEKLGFNTIFVSKYNKITLKNTGI-KIELVA--KIEDVASILF 452
>gi|257888693|ref|ZP_05668346.1| DNA repair protein RadA [Enterococcus faecium 1,141,733]
gi|293378889|ref|ZP_06625044.1| DNA repair protein RadA [Enterococcus faecium PC4.1]
gi|431043153|ref|ZP_19492952.1| DNA repair protein RadA [Enterococcus faecium E1590]
gi|431753319|ref|ZP_19541993.1| DNA repair protein RadA [Enterococcus faecium E2620]
gi|431758671|ref|ZP_19547296.1| DNA repair protein RadA [Enterococcus faecium E3083]
gi|431763435|ref|ZP_19551985.1| DNA repair protein RadA [Enterococcus faecium E3548]
gi|257824747|gb|EEV51679.1| DNA repair protein RadA [Enterococcus faecium 1,141,733]
gi|292642430|gb|EFF60585.1| DNA repair protein RadA [Enterococcus faecium PC4.1]
gi|430561597|gb|ELB00860.1| DNA repair protein RadA [Enterococcus faecium E1590]
gi|430612226|gb|ELB49277.1| DNA repair protein RadA [Enterococcus faecium E2620]
gi|430617039|gb|ELB53925.1| DNA repair protein RadA [Enterococcus faecium E3083]
gi|430622208|gb|ELB58945.1| DNA repair protein RadA [Enterococcus faecium E3548]
Length = 456
Score = 353 bits (907), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 203/477 (42%), Positives = 285/477 (59%), Gaps = 30/477 (6%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQP 169
K ++ +VC +CGY ++ G C C TM E ++ +RT E+ +P
Sbjct: 3 KKSKVQFVCQNCGYVSPKFLGRCPNCGKWNTM----VEEIEQDTTDRRTRTSLTGEKAKP 58
Query: 170 VRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAA 229
++ +V + + P E+ RVLGGG+VPGS+VLIGGDPG+GKSTLLLQ++
Sbjct: 59 TKIADV------VPKKEPRVKTKLEELNRVLGGGVVPGSMVLIGGDPGIGKSTLLLQVSQ 112
Query: 230 IIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSP 289
+A + V+YVSGEES EQI RA+R+ E +LY+ TD+ +I ++ +SP
Sbjct: 113 QLAAIG-----GKVLYVSGEESAEQIKLRAERLGSINTEFYLYAETDMNEISRAIEHISP 167
Query: 290 RALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPR 349
+IIDSIQT+ + AG + QV+E T+ LL+ AK I + + GHVTK G IAGPR
Sbjct: 168 DYVIIDSIQTMTQPDITSVAGSVSQVRETTAELLKIAKTNGIAIFIVGHVTKEGSIAGPR 227
Query: 350 VLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQ 409
+LEH+VD VLY EGE+ S+R+LR+VKNRFGST+E+G+FEM + GL+ V+NPS+IFL E+
Sbjct: 228 MLEHMVDTVLYFEGEQHHSFRILRAVKNRFGSTNEIGIFEMHEHGLEEVANPSQIFLEER 287
Query: 410 HSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQ 467
+ G A+ V M+G+R L+EIQAL R G+ +R +I++VL K+
Sbjct: 288 LDGA---TGSAIVVAMEGTRPILVEIQALVTPTMFGNAKRTTTGLDFNRVSLIMAVLEKR 344
Query: 468 AGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRM 527
AGL LQ +L GV L E A DLA+A +I SS+ E FIGEIGL GE+R
Sbjct: 345 AGLLLQNQDAYLKAAGGVKLNEPAIDLAIAVSIASSYKEKGTQPTECFIGEIGLTGEIRR 404
Query: 528 VSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGF----EQMEFIGCKNLKEVINVVF 580
VS +E+RV V KLG+ K +PK+ LG + +E +G L E + VF
Sbjct: 405 VSHIEQRVKEVQKLGFTKVYLPKN------NLGNWEAPKGIEIVGVATLAETLKRVF 455
>gi|354585456|ref|ZP_09004343.1| DNA repair protein RadA [Paenibacillus lactis 154]
gi|353188725|gb|EHB54245.1| DNA repair protein RadA [Paenibacillus lactis 154]
Length = 455
Score = 353 bits (907), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 209/475 (44%), Positives = 290/475 (61%), Gaps = 30/475 (6%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKP---EEVQ 168
+T + C++CGY +W+G C C+S +M +E V +T P + +
Sbjct: 4 TKTKFFCTECGYEAPKWFGKCPGCQSWNSM-------VEETETVIKTQGMNSPLFHSKEK 56
Query: 169 PVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMA 228
P+ ++ + G + RI +G+ E+ RVLGGGLVPGSLVL+GGDPG+GKSTLLLQ +
Sbjct: 57 PLSIINIESGKEP---RIQ-TGI--AELNRVLGGGLVPGSLVLVGGDPGIGKSTLLLQAS 110
Query: 229 AIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLS 288
+A V+Y+SGEESV Q RADR+ + ELF+ T++E I E V+ +
Sbjct: 111 NRLAQ-----SGIRVLYISGEESVRQTKLRADRLGALSPELFVLCETNLESIEEAVESVQ 165
Query: 289 PRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGP 348
P ++IDSIQTVYL V + G + QV+ECTS +R AK I +L GHVTK G IAGP
Sbjct: 166 PGFVVIDSIQTVYLPEVTSAPGSVSQVRECTSRFMRLAKVKGIATVLVGHVTKEGAIAGP 225
Query: 349 RVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSE 408
R+LEH+VD VLY EGE+ +YRLLR+VKNRFGST+E+G+FEM + GL+ V NPS++FLSE
Sbjct: 226 RMLEHMVDCVLYFEGERHHTYRLLRAVKNRFGSTNEIGIFEMGEDGLREVGNPSELFLSE 285
Query: 409 QHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVS--RHVNGIQASRADMIISVLMK 466
+ +AG V M+G+R L+E+QAL + S R G+ R ++II+VL K
Sbjct: 286 RPLG---VAGSTVVASMEGTRPVLVELQALISTTHFPSPRRMGTGVDHHRMNLIIAVLEK 342
Query: 467 QAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELR 526
+ G+ LQ +LNV GV L E A DLA+A +I SSF + P GE+GL GE+R
Sbjct: 343 RMGMFLQTQDAYLNVAGGVKLDEPAVDLAIAVSIASSFRDIPTKPYDVIFGEVGLTGEVR 402
Query: 527 MVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQ-MEFIGCKNLKEVINVVF 580
VSR E+RV KLG+++ I+P EKSL + +E IG + + + V
Sbjct: 403 AVSRAEQRVKEAEKLGFKRVILP---EKSLKGWKHPKGIEIIGVNTVADALAVAL 454
>gi|257899911|ref|ZP_05679564.1| DNA repair protein RadA [Enterococcus faecium Com15]
gi|293572692|ref|ZP_06683660.1| DNA repair protein RadA [Enterococcus faecium E980]
gi|430842648|ref|ZP_19460560.1| DNA repair protein RadA [Enterococcus faecium E1007]
gi|431083379|ref|ZP_19495950.1| DNA repair protein RadA [Enterococcus faecium E1604]
gi|431116629|ref|ZP_19497895.1| DNA repair protein RadA [Enterococcus faecium E1613]
gi|431600974|ref|ZP_19522459.1| DNA repair protein RadA [Enterococcus faecium E1861]
gi|431739225|ref|ZP_19528163.1| DNA repair protein RadA [Enterococcus faecium E1972]
gi|257837823|gb|EEV62897.1| DNA repair protein RadA [Enterococcus faecium Com15]
gi|291607278|gb|EFF36632.1| DNA repair protein RadA [Enterococcus faecium E980]
gi|430492872|gb|ELA69213.1| DNA repair protein RadA [Enterococcus faecium E1007]
gi|430565200|gb|ELB04369.1| DNA repair protein RadA [Enterococcus faecium E1604]
gi|430568409|gb|ELB07456.1| DNA repair protein RadA [Enterococcus faecium E1613]
gi|430590131|gb|ELB28216.1| DNA repair protein RadA [Enterococcus faecium E1861]
gi|430596202|gb|ELB34045.1| DNA repair protein RadA [Enterococcus faecium E1972]
Length = 456
Score = 353 bits (907), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 203/477 (42%), Positives = 285/477 (59%), Gaps = 30/477 (6%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQP 169
K ++ +VC +CGY ++ G C C TM E ++ +RT E+ +P
Sbjct: 3 KKSKVQFVCQNCGYVSPKFLGRCPNCGKWNTM----VEEIEQDTTDRRTRTSLTGEKAKP 58
Query: 170 VRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAA 229
++ +V + + P E+ RVLGGG+VPGS+VLIGGDPG+GKSTLLLQ++
Sbjct: 59 TKIADV------VPKKEPRVKTKLEELNRVLGGGVVPGSMVLIGGDPGIGKSTLLLQVSQ 112
Query: 230 IIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSP 289
+A + V+YVSGEES EQI RA+R+ E +LY+ TD+ +I ++ +SP
Sbjct: 113 QLAAIG-----GKVLYVSGEESAEQIKLRAERLGSINTEFYLYAETDMNEISRAIEHISP 167
Query: 290 RALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPR 349
+IIDSIQT+ + AG + QV+E T+ LL+ AK I + + GHVTK G IAGPR
Sbjct: 168 DYVIIDSIQTMTQPDITSVAGSVSQVRETTAELLKIAKTNGIAIFIVGHVTKEGSIAGPR 227
Query: 350 VLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQ 409
+LEH+VD VLY EGE+ S+R+LR+VKNRFGST+E+G+FEM + GL+ V+NPS+IFL E+
Sbjct: 228 MLEHMVDTVLYFEGEQHHSFRILRAVKNRFGSTNEIGIFEMHEHGLEEVANPSQIFLEER 287
Query: 410 HSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQ 467
+ G A+ V M+G+R L+EIQAL R G+ +R +I++VL K+
Sbjct: 288 LDGA---TGSAIVVAMEGTRPILVEIQALVTPTMFGNAKRTTTGLDFNRVSLIMAVLEKR 344
Query: 468 AGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRM 527
AGL LQ +L GV L E A DLA+A +I SS+ E FIGEIGL GE+R
Sbjct: 345 AGLLLQNQDAYLKAAGGVKLNEPAIDLAIAVSIASSYKEKGTQPTECFIGEIGLTGEIRR 404
Query: 528 VSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGF----EQMEFIGCKNLKEVINVVF 580
VS +E+RV V KLG+ K +PK+ LG + +E +G L E + VF
Sbjct: 405 VSHIEQRVKEVQKLGFTKVYLPKN------NLGNWEAPKGIEIVGVATLAETLKRVF 455
>gi|69245497|ref|ZP_00603461.1| DNA repair protein RadA [Enterococcus faecium DO]
gi|257879799|ref|ZP_05659452.1| DNA repair protein RadA [Enterococcus faecium 1,230,933]
gi|257886076|ref|ZP_05665729.1| DNA repair protein RadA [Enterococcus faecium 1,231,501]
gi|257891640|ref|ZP_05671293.1| DNA repair protein RadA [Enterococcus faecium 1,231,410]
gi|257894117|ref|ZP_05673770.1| DNA repair protein RadA [Enterococcus faecium 1,231,408]
gi|260559473|ref|ZP_05831654.1| DNA repair protein RadA [Enterococcus faecium C68]
gi|261206624|ref|ZP_05921322.1| DNA repair protein RadA [Enterococcus faecium TC 6]
gi|289564985|ref|ZP_06445439.1| DNA repair protein RadA [Enterococcus faecium D344SRF]
gi|293553635|ref|ZP_06674259.1| DNA repair protein RadA [Enterococcus faecium E1039]
gi|293564120|ref|ZP_06678526.1| DNA repair protein RadA [Enterococcus faecium E1162]
gi|293570056|ref|ZP_06681136.1| DNA repair protein RadA [Enterococcus faecium E1071]
gi|294614958|ref|ZP_06694849.1| DNA repair protein RadA [Enterococcus faecium E1636]
gi|294618274|ref|ZP_06697856.1| DNA repair protein RadA [Enterococcus faecium E1679]
gi|383329973|ref|YP_005355857.1| DNA repair protein RadA [Enterococcus faecium Aus0004]
gi|406579434|ref|ZP_11054665.1| DNA repair protein RadA [Enterococcus sp. GMD4E]
gi|406581857|ref|ZP_11056992.1| DNA repair protein RadA [Enterococcus sp. GMD3E]
gi|406585272|ref|ZP_11060265.1| DNA repair protein RadA [Enterococcus sp. GMD2E]
gi|406589846|ref|ZP_11064265.1| DNA repair protein RadA [Enterococcus sp. GMD1E]
gi|410937685|ref|ZP_11369544.1| DNA repair protein RadA [Enterococcus sp. GMD5E]
gi|415892471|ref|ZP_11549936.1| DNA repair protein RadA [Enterococcus faecium E4453]
gi|427397721|ref|ZP_18890203.1| DNA repair protein RadA [Enterococcus durans FB129-CNAB-4]
gi|430824275|ref|ZP_19442839.1| DNA repair protein RadA [Enterococcus faecium E0120]
gi|430832515|ref|ZP_19450558.1| DNA repair protein RadA [Enterococcus faecium E0333]
gi|430835022|ref|ZP_19453021.1| DNA repair protein RadA [Enterococcus faecium E0679]
gi|430840001|ref|ZP_19457936.1| DNA repair protein RadA [Enterococcus faecium E0688]
gi|430845310|ref|ZP_19463204.1| DNA repair protein RadA [Enterococcus faecium E1050]
gi|430847102|ref|ZP_19464949.1| DNA repair protein RadA [Enterococcus faecium E1133]
gi|430853973|ref|ZP_19471695.1| DNA repair protein RadA [Enterococcus faecium E1258]
gi|430856323|ref|ZP_19474020.1| DNA repair protein RadA [Enterococcus faecium E1392]
gi|430859153|ref|ZP_19476769.1| DNA repair protein RadA [Enterococcus faecium E1552]
gi|430861080|ref|ZP_19478672.1| DNA repair protein RadA [Enterococcus faecium E1573]
gi|430867681|ref|ZP_19482579.1| DNA repair protein RadA [Enterococcus faecium E1574]
gi|430964213|ref|ZP_19487661.1| DNA repair protein RadA [Enterococcus faecium E1576]
gi|431014758|ref|ZP_19490300.1| DNA repair protein RadA [Enterococcus faecium E1578]
gi|431239379|ref|ZP_19503682.1| DNA repair protein RadA [Enterococcus faecium E1622]
gi|431265400|ref|ZP_19506102.1| DNA repair protein RadA [Enterococcus faecium E1623]
gi|431312163|ref|ZP_19508813.1| DNA repair protein RadA [Enterococcus faecium E1626]
gi|431449072|ref|ZP_19513913.1| DNA repair protein RadA [Enterococcus faecium E1630]
gi|431561033|ref|ZP_19519665.1| DNA repair protein RadA [Enterococcus faecium E1731]
gi|431668742|ref|ZP_19524104.1| DNA repair protein RadA [Enterococcus faecium E1904]
gi|431744780|ref|ZP_19533646.1| DNA repair protein RadA [Enterococcus faecium E2071]
gi|431749899|ref|ZP_19538629.1| DNA repair protein RadA [Enterococcus faecium E2297]
gi|431756148|ref|ZP_19544786.1| DNA repair protein RadA [Enterococcus faecium E2883]
gi|431761064|ref|ZP_19549651.1| DNA repair protein RadA [Enterococcus faecium E3346]
gi|431768579|ref|ZP_19557014.1| DNA repair protein RadA [Enterococcus faecium E1321]
gi|431771783|ref|ZP_19560160.1| DNA repair protein RadA [Enterococcus faecium E1644]
gi|431774714|ref|ZP_19563019.1| DNA repair protein RadA [Enterococcus faecium E2369]
gi|431780396|ref|ZP_19568575.1| DNA repair protein RadA [Enterococcus faecium E4389]
gi|447913862|ref|YP_007395274.1| DNA repair protein RadA [Enterococcus faecium NRRL B-2354]
gi|68195748|gb|EAN10185.1| DNA repair protein RadA [Enterococcus faecium DO]
gi|257814027|gb|EEV42785.1| DNA repair protein RadA [Enterococcus faecium 1,230,933]
gi|257821932|gb|EEV49062.1| DNA repair protein RadA [Enterococcus faecium 1,231,501]
gi|257828000|gb|EEV54626.1| DNA repair protein RadA [Enterococcus faecium 1,231,410]
gi|257830496|gb|EEV57103.1| DNA repair protein RadA [Enterococcus faecium 1,231,408]
gi|260074572|gb|EEW62893.1| DNA repair protein RadA [Enterococcus faecium C68]
gi|260079117|gb|EEW66810.1| DNA repair protein RadA [Enterococcus faecium TC 6]
gi|289163192|gb|EFD11038.1| DNA repair protein RadA [Enterococcus faecium D344SRF]
gi|291587428|gb|EFF19312.1| DNA repair protein RadA [Enterococcus faecium E1071]
gi|291592244|gb|EFF23862.1| DNA repair protein RadA [Enterococcus faecium E1636]
gi|291595490|gb|EFF26801.1| DNA repair protein RadA [Enterococcus faecium E1679]
gi|291602210|gb|EFF32438.1| DNA repair protein RadA [Enterococcus faecium E1039]
gi|291604038|gb|EFF33566.1| DNA repair protein RadA [Enterococcus faecium E1162]
gi|364093300|gb|EHM35582.1| DNA repair protein RadA [Enterococcus faecium E4453]
gi|378939667|gb|AFC64739.1| DNA repair protein RadA [Enterococcus faecium Aus0004]
gi|404455470|gb|EKA02317.1| DNA repair protein RadA [Enterococcus sp. GMD4E]
gi|404459045|gb|EKA05418.1| DNA repair protein RadA [Enterococcus sp. GMD3E]
gi|404462915|gb|EKA08619.1| DNA repair protein RadA [Enterococcus sp. GMD2E]
gi|404470247|gb|EKA14900.1| DNA repair protein RadA [Enterococcus sp. GMD1E]
gi|410733818|gb|EKQ75740.1| DNA repair protein RadA [Enterococcus sp. GMD5E]
gi|425722032|gb|EKU84932.1| DNA repair protein RadA [Enterococcus durans FB129-CNAB-4]
gi|430441290|gb|ELA51405.1| DNA repair protein RadA [Enterococcus faecium E0120]
gi|430479801|gb|ELA57011.1| DNA repair protein RadA [Enterococcus faecium E0333]
gi|430484690|gb|ELA61652.1| DNA repair protein RadA [Enterococcus faecium E0679]
gi|430490109|gb|ELA66654.1| DNA repair protein RadA [Enterococcus faecium E0688]
gi|430495715|gb|ELA71851.1| DNA repair protein RadA [Enterococcus faecium E1050]
gi|430537775|gb|ELA78090.1| DNA repair protein RadA [Enterococcus faecium E1133]
gi|430539650|gb|ELA79890.1| DNA repair protein RadA [Enterococcus faecium E1258]
gi|430544241|gb|ELA84281.1| DNA repair protein RadA [Enterococcus faecium E1552]
gi|430545013|gb|ELA85015.1| DNA repair protein RadA [Enterococcus faecium E1392]
gi|430550068|gb|ELA89877.1| DNA repair protein RadA [Enterococcus faecium E1574]
gi|430550669|gb|ELA90452.1| DNA repair protein RadA [Enterococcus faecium E1573]
gi|430555274|gb|ELA94818.1| DNA repair protein RadA [Enterococcus faecium E1576]
gi|430559582|gb|ELA98930.1| DNA repair protein RadA [Enterococcus faecium E1578]
gi|430571986|gb|ELB10858.1| DNA repair protein RadA [Enterococcus faecium E1622]
gi|430576235|gb|ELB14904.1| DNA repair protein RadA [Enterococcus faecium E1623]
gi|430579112|gb|ELB17648.1| DNA repair protein RadA [Enterococcus faecium E1626]
gi|430585464|gb|ELB23749.1| DNA repair protein RadA [Enterococcus faecium E1630]
gi|430589874|gb|ELB27974.1| DNA repair protein RadA [Enterococcus faecium E1731]
gi|430599908|gb|ELB37590.1| DNA repair protein RadA [Enterococcus faecium E1904]
gi|430604940|gb|ELB42362.1| DNA repair protein RadA [Enterococcus faecium E2071]
gi|430610850|gb|ELB47980.1| DNA repair protein RadA [Enterococcus faecium E2297]
gi|430615603|gb|ELB52547.1| DNA repair protein RadA [Enterococcus faecium E2883]
gi|430622438|gb|ELB59159.1| DNA repair protein RadA [Enterococcus faecium E3346]
gi|430628998|gb|ELB65420.1| DNA repair protein RadA [Enterococcus faecium E1321]
gi|430632773|gb|ELB68974.1| DNA repair protein RadA [Enterococcus faecium E1644]
gi|430633599|gb|ELB69754.1| DNA repair protein RadA [Enterococcus faecium E2369]
gi|430639808|gb|ELB75663.1| DNA repair protein RadA [Enterococcus faecium E4389]
gi|445189571|gb|AGE31213.1| DNA repair protein RadA [Enterococcus faecium NRRL B-2354]
Length = 456
Score = 353 bits (906), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 204/477 (42%), Positives = 287/477 (60%), Gaps = 30/477 (6%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQP 169
K ++ +VC +CGY ++ G C C TM E ++ +RT E+ +P
Sbjct: 3 KKSKVQFVCQNCGYVSPKFLGRCPNCGKWNTM----VEEIEQDTTDRRTRTSLTGEKAKP 58
Query: 170 VRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAA 229
++ +V + + + RI E+ RVLGGG+VPGS+VLIGGDPG+GKSTLLLQ++
Sbjct: 59 TKIADV---VPKKEPRIKTKL---EELNRVLGGGVVPGSMVLIGGDPGIGKSTLLLQVSQ 112
Query: 230 IIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSP 289
+A + V+YVSGEES EQI RA+R+ E +LY+ TD+ +I ++ +SP
Sbjct: 113 QLAAIG-----GKVLYVSGEESAEQIKLRAERLGSINTEFYLYAETDMNEISRAIEHISP 167
Query: 290 RALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPR 349
+IIDSIQT+ + AG + QV+E T+ LL+ AK I + + GHVTK G IAGPR
Sbjct: 168 DYVIIDSIQTMTQPDITSVAGSVSQVRETTAELLKIAKTNGIAIFIVGHVTKEGSIAGPR 227
Query: 350 VLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQ 409
+LEH+VD VLY EGE+ S+R+LR+VKNRFGST+E+G+FEM + GL+ V+NPS+IFL E+
Sbjct: 228 MLEHMVDTVLYFEGEQHHSFRILRAVKNRFGSTNEIGIFEMHEHGLEEVANPSQIFLEER 287
Query: 410 HSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQ 467
+ G A+ V M+G+R L+EIQAL R G+ +R +I++VL K+
Sbjct: 288 LDGA---TGSAIVVAMEGTRPILVEIQALVTPTMFGNAKRTTTGLDFNRVSLIMAVLEKR 344
Query: 468 AGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRM 527
AGL LQ +L GV L E A DLA+A +I SS+ E FIGEIGL GE+R
Sbjct: 345 AGLLLQNQDAYLKAAGGVKLNEPAIDLAIAVSIASSYKEKGTQPTECFIGEIGLTGEIRR 404
Query: 528 VSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGF----EQMEFIGCKNLKEVINVVF 580
VS +E+RV V KLG+ K +PK+ LG + +E +G L E + VF
Sbjct: 405 VSHIEQRVKEVQKLGFTKVYLPKN------NLGNWEAPKGIEIVGVATLAETLKRVF 455
>gi|430837214|ref|ZP_19455189.1| DNA repair protein RadA [Enterococcus faecium E0680]
gi|431510860|ref|ZP_19515876.1| DNA repair protein RadA [Enterococcus faecium E1634]
gi|430487644|gb|ELA64364.1| DNA repair protein RadA [Enterococcus faecium E0680]
gi|430586728|gb|ELB24979.1| DNA repair protein RadA [Enterococcus faecium E1634]
Length = 456
Score = 353 bits (906), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 204/477 (42%), Positives = 287/477 (60%), Gaps = 30/477 (6%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQP 169
K ++ +VC +CGY ++ G C C TM E ++ +RT E+ +P
Sbjct: 3 KKSKVQFVCQNCGYVSPKFLGRCPNCGKWNTM----VEEIEQDTTDRRTRTSLTGEKAKP 58
Query: 170 VRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAA 229
++ +V + + + RI E+ RVLGGG+VPGS+VLIGGDPG+GKSTLLLQ++
Sbjct: 59 TKIADV---VPKKEPRIKTKL---EELNRVLGGGVVPGSMVLIGGDPGIGKSTLLLQVSQ 112
Query: 230 IIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSP 289
+A + V+YVSGEES EQI RA+R+ E +LY+ TD+ +I ++ +SP
Sbjct: 113 QLAAIG-----GKVLYVSGEESAEQIKLRAERLGSINTEFYLYAETDMNEISRAIEHISP 167
Query: 290 RALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPR 349
+IIDSIQT+ + AG + QV+E T+ LL+ AK I + + GHVTK G IAGPR
Sbjct: 168 DYVIIDSIQTMTQPDITSVAGSVSQVRETTAELLKIAKTNGIAIFIVGHVTKEGSIAGPR 227
Query: 350 VLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQ 409
+LEH+VD VLY EGE+ S+R+LR+VKNRFGST+E+G+FEM + GL+ V+NPS+IFL E+
Sbjct: 228 MLEHMVDTVLYFEGEQHHSFRILRAVKNRFGSTNEIGIFEMHEHGLEEVANPSQIFLEER 287
Query: 410 HSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQ 467
+ G A+ V M+G+R L+EIQAL R G+ +R +I++VL K+
Sbjct: 288 LDGA---TGSAIVVAMEGTRPILVEIQALVTPTVFGNAKRTTTGLDFNRVSLIMAVLEKR 344
Query: 468 AGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRM 527
AGL LQ +L GV L E A DLA+A +I SS+ E FIGEIGL GE+R
Sbjct: 345 AGLLLQNQDAYLKAAGGVKLNEPAIDLAIAVSIASSYKEKGTQPTECFIGEIGLTGEIRR 404
Query: 528 VSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGF----EQMEFIGCKNLKEVINVVF 580
VS +E+RV V KLG+ K +PK+ LG + +E +G L E + VF
Sbjct: 405 VSHIEQRVKEVQKLGFTKVYLPKN------NLGNWEAPKGIEIVGVATLAETLKRVF 455
>gi|314940067|ref|ZP_07847250.1| DNA repair protein RadA [Enterococcus faecium TX0133a04]
gi|314942526|ref|ZP_07849365.1| DNA repair protein RadA [Enterococcus faecium TX0133C]
gi|314949368|ref|ZP_07852709.1| DNA repair protein RadA [Enterococcus faecium TX0082]
gi|314952828|ref|ZP_07855800.1| DNA repair protein RadA [Enterococcus faecium TX0133A]
gi|314993739|ref|ZP_07859084.1| DNA repair protein RadA [Enterococcus faecium TX0133B]
gi|314994804|ref|ZP_07859936.1| DNA repair protein RadA [Enterococcus faecium TX0133a01]
gi|389869789|ref|YP_006377212.1| DNA repair protein RadA [Enterococcus faecium DO]
gi|424791475|ref|ZP_18217887.1| DNA repair protein RadA [Enterococcus faecium V689]
gi|424849974|ref|ZP_18274401.1| DNA repair protein RadA [Enterococcus faecium R501]
gi|424858123|ref|ZP_18282169.1| DNA repair protein RadA [Enterococcus faecium R499]
gi|424866102|ref|ZP_18289952.1| DNA repair protein RadA [Enterococcus faecium R497]
gi|424952348|ref|ZP_18367374.1| DNA repair protein RadA [Enterococcus faecium R494]
gi|424961726|ref|ZP_18376145.1| DNA repair protein RadA [Enterococcus faecium P1986]
gi|424964579|ref|ZP_18378657.1| DNA repair protein RadA [Enterococcus faecium P1190]
gi|424972646|ref|ZP_18385970.1| DNA repair protein RadA [Enterococcus faecium P1139]
gi|424975552|ref|ZP_18388704.1| DNA repair protein RadA [Enterococcus faecium P1137]
gi|424979366|ref|ZP_18392223.1| DNA repair protein RadA [Enterococcus faecium P1123]
gi|424982254|ref|ZP_18394930.1| DNA repair protein RadA [Enterococcus faecium ERV99]
gi|424985934|ref|ZP_18398391.1| DNA repair protein RadA [Enterococcus faecium ERV69]
gi|424989171|ref|ZP_18401454.1| DNA repair protein RadA [Enterococcus faecium ERV38]
gi|424992486|ref|ZP_18404543.1| DNA repair protein RadA [Enterococcus faecium ERV26]
gi|425008226|ref|ZP_18419319.1| DNA repair protein RadA [Enterococcus faecium ERV1]
gi|425015211|ref|ZP_18425847.1| DNA repair protein RadA [Enterococcus faecium E417]
gi|425022067|ref|ZP_18432277.1| DNA repair protein RadA [Enterococcus faecium C497]
gi|425026398|ref|ZP_18434863.1| DNA repair protein RadA [Enterococcus faecium C1904]
gi|425035955|ref|ZP_18440758.1| DNA repair protein RadA [Enterococcus faecium 514]
gi|425039271|ref|ZP_18443825.1| DNA repair protein RadA [Enterococcus faecium 513]
gi|425042936|ref|ZP_18447212.1| DNA repair protein RadA [Enterococcus faecium 511]
gi|425046860|ref|ZP_18450848.1| DNA repair protein RadA [Enterococcus faecium 510]
gi|425049955|ref|ZP_18453735.1| DNA repair protein RadA [Enterococcus faecium 509]
gi|425053593|ref|ZP_18457127.1| DNA repair protein RadA [Enterococcus faecium 506]
gi|425059234|ref|ZP_18462584.1| DNA repair protein RadA [Enterococcus faecium 504]
gi|425061174|ref|ZP_18464434.1| DNA repair protein RadA [Enterococcus faecium 503]
gi|313590988|gb|EFR69833.1| DNA repair protein RadA [Enterococcus faecium TX0133a01]
gi|313591839|gb|EFR70684.1| DNA repair protein RadA [Enterococcus faecium TX0133B]
gi|313595062|gb|EFR73907.1| DNA repair protein RadA [Enterococcus faecium TX0133A]
gi|313598747|gb|EFR77592.1| DNA repair protein RadA [Enterococcus faecium TX0133C]
gi|313640667|gb|EFS05247.1| DNA repair protein RadA [Enterococcus faecium TX0133a04]
gi|313644199|gb|EFS08779.1| DNA repair protein RadA [Enterococcus faecium TX0082]
gi|388535038|gb|AFK60230.1| DNA repair protein RadA [Enterococcus faecium DO]
gi|402916324|gb|EJX37206.1| DNA repair protein RadA [Enterococcus faecium R501]
gi|402919240|gb|EJX39858.1| DNA repair protein RadA [Enterococcus faecium V689]
gi|402927194|gb|EJX47174.1| DNA repair protein RadA [Enterococcus faecium R499]
gi|402939063|gb|EJX58017.1| DNA repair protein RadA [Enterococcus faecium R497]
gi|402941462|gb|EJX60188.1| DNA repair protein RadA [Enterococcus faecium R494]
gi|402942628|gb|EJX61197.1| DNA repair protein RadA [Enterococcus faecium P1986]
gi|402946293|gb|EJX64576.1| DNA repair protein RadA [Enterococcus faecium P1190]
gi|402953205|gb|EJX70939.1| DNA repair protein RadA [Enterococcus faecium P1137]
gi|402953276|gb|EJX71009.1| DNA repair protein RadA [Enterococcus faecium P1139]
gi|402958388|gb|EJX75702.1| DNA repair protein RadA [Enterococcus faecium P1123]
gi|402961495|gb|EJX78522.1| DNA repair protein RadA [Enterococcus faecium ERV99]
gi|402964895|gb|EJX81646.1| DNA repair protein RadA [Enterococcus faecium ERV69]
gi|402969683|gb|EJX86076.1| DNA repair protein RadA [Enterococcus faecium ERV38]
gi|402973132|gb|EJX89278.1| DNA repair protein RadA [Enterococcus faecium ERV26]
gi|402993065|gb|EJY07711.1| DNA repair protein RadA [Enterococcus faecium ERV1]
gi|402996429|gb|EJY10812.1| DNA repair protein RadA [Enterococcus faecium E417]
gi|403004392|gb|EJY18206.1| DNA repair protein RadA [Enterococcus faecium C497]
gi|403005623|gb|EJY19314.1| DNA repair protein RadA [Enterococcus faecium C1904]
gi|403016386|gb|EJY29208.1| DNA repair protein RadA [Enterococcus faecium 514]
gi|403016680|gb|EJY29484.1| DNA repair protein RadA [Enterococcus faecium 513]
gi|403021736|gb|EJY34166.1| DNA repair protein RadA [Enterococcus faecium 511]
gi|403023085|gb|EJY35375.1| DNA repair protein RadA [Enterococcus faecium 510]
gi|403025027|gb|EJY37138.1| DNA repair protein RadA [Enterococcus faecium 509]
gi|403029546|gb|EJY41296.1| DNA repair protein RadA [Enterococcus faecium 506]
gi|403036167|gb|EJY47530.1| DNA repair protein RadA [Enterococcus faecium 504]
gi|403041875|gb|EJY52856.1| DNA repair protein RadA [Enterococcus faecium 503]
Length = 465
Score = 353 bits (906), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 204/477 (42%), Positives = 287/477 (60%), Gaps = 30/477 (6%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQP 169
K ++ +VC +CGY ++ G C C TM E ++ +RT E+ +P
Sbjct: 12 KKSKVQFVCQNCGYVSPKFLGRCPNCGKWNTM----VEEIEQDTTDRRTRTSLTGEKAKP 67
Query: 170 VRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAA 229
++ +V + + + RI E+ RVLGGG+VPGS+VLIGGDPG+GKSTLLLQ++
Sbjct: 68 TKIADV---VPKKEPRIKTKL---EELNRVLGGGVVPGSMVLIGGDPGIGKSTLLLQVSQ 121
Query: 230 IIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSP 289
+A + V+YVSGEES EQI RA+R+ E +LY+ TD+ +I ++ +SP
Sbjct: 122 QLAAIG-----GKVLYVSGEESAEQIKLRAERLGSINTEFYLYAETDMNEISRAIEHISP 176
Query: 290 RALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPR 349
+IIDSIQT+ + AG + QV+E T+ LL+ AK I + + GHVTK G IAGPR
Sbjct: 177 DYVIIDSIQTMTQPDITSVAGSVSQVRETTAELLKIAKTNGIAIFIVGHVTKEGSIAGPR 236
Query: 350 VLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQ 409
+LEH+VD VLY EGE+ S+R+LR+VKNRFGST+E+G+FEM + GL+ V+NPS+IFL E+
Sbjct: 237 MLEHMVDTVLYFEGEQHHSFRILRAVKNRFGSTNEIGIFEMHEHGLEEVANPSQIFLEER 296
Query: 410 HSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQ 467
+ G A+ V M+G+R L+EIQAL R G+ +R +I++VL K+
Sbjct: 297 LDGA---TGSAIVVAMEGTRPILVEIQALVTPTMFGNAKRTTTGLDFNRVSLIMAVLEKR 353
Query: 468 AGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRM 527
AGL LQ +L GV L E A DLA+A +I SS+ E FIGEIGL GE+R
Sbjct: 354 AGLLLQNQDAYLKAAGGVKLNEPAIDLAIAVSIASSYKEKGTQPTECFIGEIGLTGEIRR 413
Query: 528 VSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGF----EQMEFIGCKNLKEVINVVF 580
VS +E+RV V KLG+ K +PK+ LG + +E +G L E + VF
Sbjct: 414 VSHIEQRVKEVQKLGFTKVYLPKN------NLGNWEAPKGIEIVGVATLAETLKRVF 464
>gi|126653477|ref|ZP_01725570.1| predicted repair protein [Bacillus sp. B14905]
gi|126589755|gb|EAZ83889.1| predicted repair protein [Bacillus sp. B14905]
Length = 458
Score = 353 bits (906), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 196/479 (40%), Positives = 289/479 (60%), Gaps = 37/479 (7%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRAC-------ESVGTMKRYSAGESDEGPVVQRTWLPQKP 164
+T +VCS CGY +W G C C E V + + G V + +P
Sbjct: 4 KKTKFVCSGCGYESAKWMGRCPGCGEWNKMVEEVEVIAKGPRGAFQHSATVTQKAIPIIQ 63
Query: 165 EEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLL 224
E + G E+ RVLGGG+VPGSLVLIGGDPG+GKSTLL
Sbjct: 64 VEASEESRVATEMG----------------ELNRVLGGGIVPGSLVLIGGDPGIGKSTLL 107
Query: 225 LQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKV 284
LQ++A++++ + V+Y+SGEES+ Q RA+R+ + ++EL++YS T++E + + +
Sbjct: 108 LQVSALLSN-----KGHRVLYISGEESIRQTKLRAERLGVISQELYIYSETNLEFLNQTI 162
Query: 285 QPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGD 344
+ + P+ +I+DSIQTV+ V + G + QV+ECT+ L+R AK I + L GHVTK G
Sbjct: 163 EEVQPKFVIVDSIQTVFHPEVTSAPGSVSQVRECTAELMRIAKTKGIAIFLVGHVTKEGQ 222
Query: 345 IAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKI 404
IAGPR+LEH+VD VLY EGE+ ++R+LRS KNRFGST+E+ +FEM Q GL+ V NPS++
Sbjct: 223 IAGPRILEHMVDTVLYFEGERHHNHRILRSQKNRFGSTNEIAIFEMLQGGLKEVLNPSEL 282
Query: 405 FLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIIS 462
FL E+ S+ AG + M+G+R L+EIQ+L S + R G+ +R ++++
Sbjct: 283 FLQER---SQGAAGSTIVASMEGTRPILVEIQSLVTPTSFNYPKRMATGVDQNRVQLLMA 339
Query: 463 VLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLG 522
VL K+ GL LQ ++ V GV L E A DLAV +I SSF + + F+GE+GL
Sbjct: 340 VLEKRMGLMLQAQDAYIKVAGGVKLDEPAIDLAVLTSIVSSFKDQAVRATDCFVGEVGLT 399
Query: 523 GELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQ-MEFIGCKNLKEVINVVF 580
GE+R VSR+E+RV AKLG+++ +P S ++ F Q +E IG + +K+ +N F
Sbjct: 400 GEVRRVSRIEQRVIEAAKLGFKRVFIPTS---NIGGWDFPQGIEIIGVETIKDALNACF 455
>gi|257882525|ref|ZP_05662178.1| DNA repair protein RadA [Enterococcus faecium 1,231,502]
gi|294623056|ref|ZP_06701943.1| DNA repair protein RadA [Enterococcus faecium U0317]
gi|416132945|ref|ZP_11597971.1| DNA repair protein RadA [Enterococcus faecium E4452]
gi|431777700|ref|ZP_19565951.1| DNA repair protein RadA [Enterococcus faecium E2560]
gi|431783202|ref|ZP_19571324.1| DNA repair protein RadA [Enterococcus faecium E6012]
gi|431784158|ref|ZP_19572203.1| DNA repair protein RadA [Enterococcus faecium E6045]
gi|257818183|gb|EEV45511.1| DNA repair protein RadA [Enterococcus faecium 1,231,502]
gi|291597529|gb|EFF28693.1| DNA repair protein RadA [Enterococcus faecium U0317]
gi|364093170|gb|EHM35469.1| DNA repair protein RadA [Enterococcus faecium E4452]
gi|430638993|gb|ELB74884.1| DNA repair protein RadA [Enterococcus faecium E2560]
gi|430645875|gb|ELB81377.1| DNA repair protein RadA [Enterococcus faecium E6012]
gi|430650199|gb|ELB85553.1| DNA repair protein RadA [Enterococcus faecium E6045]
Length = 456
Score = 353 bits (906), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 204/477 (42%), Positives = 287/477 (60%), Gaps = 30/477 (6%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQP 169
K ++ +VC +CGY ++ G C C TM E ++ +RT E+ +P
Sbjct: 3 KKSKVQFVCQNCGYVSPKFLGRCPNCGKWNTM----VEEIEQDTTDRRTRTSLTGEKAKP 58
Query: 170 VRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAA 229
++ +V + + + RI E+ RVLGGG+VPGS+VLIGGDPG+GKSTLLLQ++
Sbjct: 59 TKIADV---VPKKEPRIKTKL---EELNRVLGGGVVPGSMVLIGGDPGIGKSTLLLQVSQ 112
Query: 230 IIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSP 289
+A + V+YVSGEES EQI RA+R+ E +LY+ TD+ +I ++ +SP
Sbjct: 113 QLAAIG-----GKVLYVSGEESAEQIKLRAERLGSINTEFYLYAETDMNEISRAIEHISP 167
Query: 290 RALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPR 349
+IIDSIQT+ + AG + QV+E T+ LL+ AK I + + GHVTK G IAGPR
Sbjct: 168 DYVIIDSIQTMTQPDITSVAGSVSQVRETTAELLKTAKTNGIAIFIVGHVTKEGSIAGPR 227
Query: 350 VLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQ 409
+LEH+VD VLY EGE+ S+R+LR+VKNRFGST+E+G+FEM + GL+ V+NPS+IFL E+
Sbjct: 228 MLEHMVDTVLYFEGEQHHSFRILRAVKNRFGSTNEIGIFEMHEHGLEEVANPSQIFLEER 287
Query: 410 HSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQ 467
+ G A+ V M+G+R L+EIQAL R G+ +R +I++VL K+
Sbjct: 288 LDGA---TGSAIVVAMEGTRPILVEIQALVTPTMFGNAKRTTTGLDFNRVSLIMAVLEKR 344
Query: 468 AGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRM 527
AGL LQ +L GV L E A DLA+A +I SS+ E FIGEIGL GE+R
Sbjct: 345 AGLLLQNQDAYLKAAGGVKLNEPAIDLAIAVSIASSYKEKGTQPTECFIGEIGLTGEIRR 404
Query: 528 VSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGF----EQMEFIGCKNLKEVINVVF 580
VS +E+RV V KLG+ K +PK+ LG + +E +G L E + VF
Sbjct: 405 VSHIEQRVKEVQKLGFTKVYLPKN------NLGNWEAPKGIEIVGVATLAETLKRVF 455
>gi|299541900|ref|ZP_07052223.1| DNA repair protein RadA [Lysinibacillus fusiformis ZC1]
gi|424739340|ref|ZP_18167759.1| DNA repair protein RadA [Lysinibacillus fusiformis ZB2]
gi|298725638|gb|EFI66279.1| DNA repair protein RadA [Lysinibacillus fusiformis ZC1]
gi|422946737|gb|EKU41143.1| DNA repair protein RadA [Lysinibacillus fusiformis ZB2]
Length = 458
Score = 353 bits (906), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 195/474 (41%), Positives = 290/474 (61%), Gaps = 27/474 (5%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTM--KRYSAGESDEGPVVQRTWLPQKPEEVQP 169
+T +VCS CGY +W G C C M + + G + QK +
Sbjct: 4 KKTKFVCSGCGYESAKWMGRCPGCGEWNKMVEEVEMVAKGPRGAFQHSATVTQKAIPIIQ 63
Query: 170 VRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAA 229
V E ++ ++ E+ RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++A
Sbjct: 64 VEATEESRVATEM-----------GELNRVLGGGIVPGSLVLIGGDPGIGKSTLLLQVSA 112
Query: 230 IIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSP 289
++++ + V+Y+SGEES+ Q RA+R+ + ++EL++YS T++E + + + + P
Sbjct: 113 LLSN-----KGHRVLYISGEESIRQTKLRAERLGVISQELYIYSETNLEFLNQTIDEVQP 167
Query: 290 RALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPR 349
+ +I+DSIQTV+ V + G + QV+ECT+ L+R AK I + L GHVTK G IAGPR
Sbjct: 168 KFVIVDSIQTVFHPEVTSAPGSVSQVRECTAELMRIAKTKGIAIFLVGHVTKEGQIAGPR 227
Query: 350 VLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQ 409
+LEH+VD VLY EGE+ ++R+LRS KNRFGST+E+ +FEM Q GL+ V NPS++FL E+
Sbjct: 228 ILEHMVDTVLYFEGERHHNHRILRSQKNRFGSTNEIAIFEMLQGGLKEVLNPSELFLQER 287
Query: 410 HSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVLMKQ 467
S+ AG + M+G+R L+EIQ+L S + R G+ +R ++++VL K+
Sbjct: 288 ---SQGAAGSTIVASMEGTRPILVEIQSLVTPTSFNYPKRMATGVDQNRVQLLMAVLEKR 344
Query: 468 AGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRM 527
GL LQ ++ V GV L E A DLAV +I SSF + + FIGE+GL GE+R
Sbjct: 345 MGLMLQAQDAYIKVAGGVKLDEPAIDLAVLTSIVSSFKDQAVRATDCFIGEVGLTGEVRR 404
Query: 528 VSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQ-MEFIGCKNLKEVINVVF 580
VSR+E+RV AKLG+++ +P S ++ F Q +E +G + +K+ +N F
Sbjct: 405 VSRIEQRVIEAAKLGFKRAFIPSS---NIGGWEFPQGIEIVGVETIKDALNACF 455
>gi|424762685|ref|ZP_18190185.1| DNA repair protein RadA [Enterococcus faecalis TX1337RF]
gi|402424256|gb|EJV56443.1| DNA repair protein RadA [Enterococcus faecium TX1337RF]
Length = 465
Score = 353 bits (906), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 203/477 (42%), Positives = 285/477 (59%), Gaps = 30/477 (6%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQP 169
K ++ +VC +CGY ++ G C C TM E ++ +RT E+ +P
Sbjct: 12 KKSKVQFVCQNCGYVSPKFLGRCPNCGKWNTM----VEEIEQDTTDRRTRTSLTGEKAKP 67
Query: 170 VRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAA 229
++ +V + + P E+ RVLGGG+VPGS+VLIGGDPG+GKSTLLLQ++
Sbjct: 68 TKIADV------VPKKEPRVKTKLEELNRVLGGGVVPGSMVLIGGDPGIGKSTLLLQVSQ 121
Query: 230 IIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSP 289
+A + V+YVSGEES EQI RA+R+ E +LY+ TD+ +I ++ +SP
Sbjct: 122 QLAAIG-----GKVLYVSGEESAEQIKLRAERLGSINTEFYLYAETDMNEISRAIEHISP 176
Query: 290 RALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPR 349
+IIDSIQT+ + AG + QV+E T+ LL+ AK I + + GHVTK G IAGPR
Sbjct: 177 DYVIIDSIQTMTQPDITSVAGSVSQVRETTAELLKIAKTNGIAIFIVGHVTKEGSIAGPR 236
Query: 350 VLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQ 409
+LEH+VD VLY EGE+ S+R+LR+VKNRFGST+E+G+FEM + GL+ V+NPS+IFL E+
Sbjct: 237 MLEHMVDTVLYFEGEQHHSFRILRAVKNRFGSTNEIGIFEMHEHGLEEVANPSQIFLEER 296
Query: 410 HSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQ 467
+ G A+ V M+G+R L+EIQAL R G+ +R +I++VL K+
Sbjct: 297 LDGA---TGSAIVVAMEGTRPILVEIQALVTPTMFGNAKRTTTGLDFNRVSLIMAVLEKR 353
Query: 468 AGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRM 527
AGL LQ +L GV L E A DLA+A +I SS+ E FIGEIGL GE+R
Sbjct: 354 AGLLLQNQDAYLKAAGGVKLNEPAIDLAIAVSIASSYKEKGTQPTECFIGEIGLTGEIRR 413
Query: 528 VSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGF----EQMEFIGCKNLKEVINVVF 580
VS +E+RV V KLG+ K +PK+ LG + +E +G L E + VF
Sbjct: 414 VSHIEQRVKEVQKLGFTKVYLPKN------NLGNWEAPKGIEIVGVATLAETLKRVF 464
>gi|430851280|ref|ZP_19469030.1| DNA repair protein RadA [Enterococcus faecium E1185]
gi|430534242|gb|ELA74703.1| DNA repair protein RadA [Enterococcus faecium E1185]
Length = 456
Score = 353 bits (906), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 204/477 (42%), Positives = 287/477 (60%), Gaps = 30/477 (6%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQP 169
K ++ +VC +CGY ++ G C C TM E ++ +RT E+ +P
Sbjct: 3 KKSKVQFVCQNCGYVSPKFLGRCPNCGKWNTM----VEEIEQDTTDRRTRTSLTGEKAKP 58
Query: 170 VRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAA 229
++ +V + + + RI E+ RVLGGG+VPGS+VLIGGDPG+GKSTLLLQ++
Sbjct: 59 TKIADV---VPKKEPRIKTKL---EELNRVLGGGVVPGSIVLIGGDPGIGKSTLLLQVSQ 112
Query: 230 IIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSP 289
+A + V+YVSGEES EQI RA+R+ E +LY+ TD+ +I ++ +SP
Sbjct: 113 QLAAIG-----GKVLYVSGEESAEQIKLRAERLGSINTEFYLYAETDMNEISRAIEHISP 167
Query: 290 RALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPR 349
+IIDSIQT+ + AG + QV+E T+ LL+ AK I + + GHVTK G IAGPR
Sbjct: 168 DYVIIDSIQTMTQPDITSVAGSVSQVRETTAELLKIAKTNGIAIFIVGHVTKEGSIAGPR 227
Query: 350 VLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQ 409
+LEH+VD VLY EGE+ S+R+LR+VKNRFGST+E+G+FEM + GL+ V+NPS+IFL E+
Sbjct: 228 MLEHMVDTVLYFEGEQHHSFRILRAVKNRFGSTNEIGIFEMHEHGLEEVANPSQIFLEER 287
Query: 410 HSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQ 467
+ G A+ V M+G+R L+EIQAL R G+ +R +I++VL K+
Sbjct: 288 LDGA---TGSAIVVAMEGTRPILVEIQALVTPTMFGNAKRTTTGLDFNRVSLIMAVLEKR 344
Query: 468 AGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRM 527
AGL LQ +L GV L E A DLA+A +I SS+ E FIGEIGL GE+R
Sbjct: 345 AGLLLQNQDAYLKAAGGVKLNEPAIDLAIAVSIASSYKEKGTQPTECFIGEIGLTGEIRR 404
Query: 528 VSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGF----EQMEFIGCKNLKEVINVVF 580
VS +E+RV V KLG+ K +PK+ LG + +E +G L E + VF
Sbjct: 405 VSHIEQRVKEVQKLGFTKVYLPKN------NLGNWEAPKGIEIVGVATLAETLKRVF 455
>gi|89889630|ref|ZP_01201141.1| DNA repair protein, RadA-like [Flavobacteria bacterium BBFL7]
gi|89517903|gb|EAS20559.1| DNA repair protein, RadA-like [Flavobacteria bacterium BBFL7]
Length = 455
Score = 353 bits (906), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 185/451 (41%), Positives = 274/451 (60%), Gaps = 32/451 (7%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTM-------KRYSAGESDEGPVVQRTWLPQKPE 165
+T W C +CG +W G C C+ T+ ++ + ++ G + R PQ P+
Sbjct: 5 KTTWFCQNCGAQHARWQGQCTTCKEWNTLVEEVVQKEKKPSWDAASGDTLSRKRTPQ-PQ 63
Query: 166 EVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLL 225
+ + + E P E RVLGGGLVPGS+ L+GG+PG+GKSTLLL
Sbjct: 64 LISQIDVTET-----------PRLDTTNAEFNRVLGGGLVPGSVTLLGGEPGIGKSTLLL 112
Query: 226 QMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQ 285
Q+ L P +YVSGEES +QI RADR+ ++ + T ++I ++
Sbjct: 113 QVC--------LNLPYKTLYVSGEESAQQIKMRADRIKQNATNCYILTETKTQNIFRQIT 164
Query: 286 PLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDI 345
+ P LIIDSIQT+ + +AG + Q++ECTS L++FAK+TN PVLL GH+TK G+I
Sbjct: 165 EMEPEVLIIDSIQTLQTEIIESTAGSVSQIRECTSELIKFAKETNTPVLLIGHITKDGNI 224
Query: 346 AGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIF 405
AGP++LEH+VD+VL EG++ +YR+LR++KNRFGST E+G++EM GL+ V NPS+I
Sbjct: 225 AGPKILEHMVDSVLQFEGDRNHTYRILRALKNRFGSTHEIGIYEMLGHGLREVINPSEIL 284
Query: 406 LSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISV 463
+S++ + L+G A+A M+G R +IE+QAL + T R G R +MI++V
Sbjct: 285 ISQRGTS---LSGTAIAATMEGMRPLMIEVQALVSTAVYGTPQRSATGYNLKRLNMILAV 341
Query: 464 LMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGG 523
L K+AG KL + +FLN+ G+ + + A DLAV AAI SS + + + + E+GLGG
Sbjct: 342 LEKRAGFKLGQKDVFLNITGGITVDDPAIDLAVVAAILSSNFDIELSSQHCYSAEVGLGG 401
Query: 524 ELRMVSRMEKRVSTVAKLGYRKCIVPKSAEK 554
E+R VSRME+RV+ AKLG+ K + + +K
Sbjct: 402 EIRPVSRMEQRVNEAAKLGFEKVFIAPAKQK 432
>gi|421769962|ref|ZP_16206666.1| DNA repair protein RadA [Lactobacillus rhamnosus LRHMDP2]
gi|421773638|ref|ZP_16210278.1| DNA repair protein RadA [Lactobacillus rhamnosus LRHMDP3]
gi|411181542|gb|EKS48711.1| DNA repair protein RadA [Lactobacillus rhamnosus LRHMDP3]
gi|411183322|gb|EKS50461.1| DNA repair protein RadA [Lactobacillus rhamnosus LRHMDP2]
Length = 454
Score = 353 bits (906), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 199/476 (41%), Positives = 286/476 (60%), Gaps = 35/476 (7%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKP---EEVQP 169
+T +VC +CGY + G C C T+ + + P RT KP +EV
Sbjct: 5 KTQYVCQNCGYISATYLGRCPNCGGWNTLVEETVSSTKSAPRQTRTGSKVKPTRMDEVTV 64
Query: 170 VRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAA 229
+ V G+ +L+ RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++
Sbjct: 65 TKETRVKTGLAELN--------------RVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSG 110
Query: 230 IIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTD---IEDIVEKVQP 286
+A V+YVSGEES QI RA R+ +A ++LY TD IE++++K+QP
Sbjct: 111 QLASTG-----GTVLYVSGEESASQIKMRAGRLGVANSGMYLYPETDMPSIENVIDKMQP 165
Query: 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIA 346
++IDS+QT+ + + + G + Q++E T+ L+R AK + + + GHVTK G IA
Sbjct: 166 ---DYVVIDSVQTMNVPDMNSAVGSVAQIREVTAELMRIAKSKGVTIFIVGHVTKEGAIA 222
Query: 347 GPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFL 406
GP++LEH+VD VLY EG+ +YR+LRSVKNRFGST+E+G+FEM Q GLQ V+NPS+IFL
Sbjct: 223 GPKILEHMVDTVLYFEGDMHHTYRILRSVKNRFGSTNEIGIFEMHQNGLQEVANPSEIFL 282
Query: 407 SEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVL 464
E+ + + G AV V M+G+R L+EIQAL R +G+ +R +I++VL
Sbjct: 283 EERLAGA---TGSAVVVSMEGTRPILVEIQALISPTMYGNAKRTSSGLDHNRVSLIMAVL 339
Query: 465 MKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGE 524
K+A L LQ +L GV L E A DLA+A AI SS+ + IP F+GEIGL GE
Sbjct: 340 EKRANLMLQNQDAYLKATGGVKLDEPAIDLAMAVAIASSYRDKEIPPTDCFVGEIGLTGE 399
Query: 525 LRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+R V+R+E RV AKLG+++ VP++ + + ++ IG ++ E ++ VF
Sbjct: 400 VRRVNRIEDRVKEAAKLGFKRIFVPRNNLQGWR--APKDIQVIGVTSIAEALHKVF 453
>gi|425055086|ref|ZP_18458577.1| DNA repair protein RadA [Enterococcus faecium 505]
gi|403034583|gb|EJY46020.1| DNA repair protein RadA [Enterococcus faecium 505]
Length = 465
Score = 353 bits (906), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 203/477 (42%), Positives = 285/477 (59%), Gaps = 30/477 (6%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQP 169
K ++ +VC +CGY ++ G C C TM E ++ +RT E+ +P
Sbjct: 12 KKSKVQFVCQNCGYVSPKFLGRCPNCGKWNTM----VEEIEQDTTDRRTRTSLTGEKAKP 67
Query: 170 VRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAA 229
++ +V + + P E+ RVLGGG+VPGS+VLIGGDPG+GKSTLLLQ++
Sbjct: 68 TKIADV------VPKKEPRVKTKLEEMNRVLGGGVVPGSMVLIGGDPGIGKSTLLLQVSQ 121
Query: 230 IIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSP 289
+A + V+YVSGEES EQI RA+R+ E +LY+ TD+ +I ++ +SP
Sbjct: 122 QLAAIG-----GKVLYVSGEESAEQIKLRAERLGSINTEFYLYAETDMNEISRAIEHISP 176
Query: 290 RALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPR 349
+IIDSIQT+ + AG + QV+E T+ LL+ AK I + + GHVTK G IAGPR
Sbjct: 177 DYVIIDSIQTMTQPDITSVAGSVSQVRETTAELLKIAKTNGIAIFIVGHVTKEGSIAGPR 236
Query: 350 VLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQ 409
+LEH+VD VLY EGE+ S+R+LR+VKNRFGST+E+G+FEM + GL+ V+NPS+IFL E+
Sbjct: 237 MLEHMVDTVLYFEGEQHHSFRILRAVKNRFGSTNEIGIFEMHEHGLEEVANPSQIFLEER 296
Query: 410 HSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQ 467
+ G A+ V M+G+R L+EIQAL R G+ +R +I++VL K+
Sbjct: 297 LDGA---TGSAIVVAMEGTRPILVEIQALVTPTMFGNAKRTTTGLDFNRVSLIMAVLEKR 353
Query: 468 AGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRM 527
AGL LQ +L GV L E A DLA+A +I SS+ E FIGEIGL GE+R
Sbjct: 354 AGLLLQNQDAYLKAAGGVKLNEPAIDLAIAVSIASSYKEKGTQPTECFIGEIGLTGEIRR 413
Query: 528 VSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGF----EQMEFIGCKNLKEVINVVF 580
VS +E+RV V KLG+ K +PK+ LG + +E +G L E + VF
Sbjct: 414 VSHIEQRVKEVQKLGFTKVYLPKN------NLGNWEAPKGIEIVGVATLAETLKRVF 464
>gi|421453271|ref|ZP_15902627.1| DNA repair protein RadA [Streptococcus salivarius K12]
gi|400181580|gb|EJO15847.1| DNA repair protein RadA [Streptococcus salivarius K12]
Length = 466
Score = 353 bits (905), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 197/471 (41%), Positives = 282/471 (59%), Gaps = 24/471 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
++ +VC +CGY ++ G C C S + + + + V T KP +++ V
Sbjct: 18 KSTFVCRECGYNSPKYLGRCPNCSSWSSFEEEVEVQEVKNARVSLTGEKSKPTKLKEVSS 77
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
+ + +D E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ +A
Sbjct: 78 INYARIKTDMD-----------EFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLA 126
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+ V+YVSGEES EQI R++R+ E +LY+ T+++ + +V+ + P L
Sbjct: 127 N------KGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQAVRSQVEAIKPDFL 180
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQT+ ++G G + QV+E T+ L++ AK NI + GHVTK G +AGPR+LE
Sbjct: 181 IIDSIQTIMSPEISGVQGSVSQVREVTAELMQIAKTNNIATFIVGHVTKEGQLAGPRMLE 240
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS++FL E+
Sbjct: 241 HMVDTVLYFEGERHHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDG 300
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
+ G A+ V M+GSR L E+QAL R G+ +R +I++VL K+ GL
Sbjct: 301 A---TGSAIVVTMEGSRPILAEVQALVTPTVFGNAKRTTTGLDFNRVSLIMAVLEKRCGL 357
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ +L GV L E A DLAVA AI SS+ E P AFIGEIGL GE+R V+R
Sbjct: 358 LLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKELPTNPQEAFIGEIGLTGEIRRVTR 417
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVFT 581
+E+R++ AKLG+ K PK++ + E ++ IG + EV+ VF+
Sbjct: 418 IEQRINEAAKLGFTKIYAPKNSLHGMKIP--EGIQVIGVTTVGEVLKKVFS 466
>gi|308071006|ref|YP_003872611.1| DNA repair protein [Paenibacillus polymyxa E681]
gi|305860285|gb|ADM72073.1| DNA repair protein, radA-like protein [Paenibacillus polymyxa E681]
Length = 457
Score = 353 bits (905), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 207/449 (46%), Positives = 282/449 (62%), Gaps = 27/449 (6%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQR---TWLPQKPEEVQP 169
+T + C++CGY +W+G C C++ +M E E V + + L + +P
Sbjct: 5 KTKFSCTECGYESPKWYGKCPGCQAWNSMV-----EETESVVKTQGMGSSLLTHSTKDKP 59
Query: 170 VRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAA 229
+ ++EV G + RI L+G+ E+ RVLGGG+VPGSLVL+GGDPG+GKSTL+LQ +
Sbjct: 60 LPIIEVESGK---ETRI-LTGI--GELNRVLGGGVVPGSLVLVGGDPGIGKSTLMLQTSN 113
Query: 230 IIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSP 289
+A V+YVSGEESV Q RADR+ + L++ T++E I E V L P
Sbjct: 114 ELALTG-----LKVLYVSGEESVRQTKLRADRLGALSPSLYVLCETNLETIEEAVDSLKP 168
Query: 290 RALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPR 349
L+IDSIQTVYL V + G + QV+ECTS +R AK I +L GHVTK G IAGPR
Sbjct: 169 EFLVIDSIQTVYLPEVTSAPGSVAQVRECTSRFMRIAKGLGIATVLVGHVTKEGAIAGPR 228
Query: 350 VLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQ 409
+LEH+VD VLY EGE+ +YRLLR+VKNRFGST+E+G+FEM++ GL+ VSNPS++FLSE+
Sbjct: 229 LLEHMVDCVLYFEGERHHTYRLLRAVKNRFGSTNEIGIFEMAESGLREVSNPSELFLSER 288
Query: 410 HSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVS--RHVNGIQASRADMIISVLMKQ 467
+AG V M+G+R L+E+QAL + S R G+ R +II+VL K+
Sbjct: 289 PLG---VAGSTVVASMEGTRPVLVELQALIAATHFPSPRRMGTGVDHHRMGLIIAVLEKR 345
Query: 468 AGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRM 527
G+ LQ +LNV GV L E A DLA+A +I SSF + P GE+GL GE+R
Sbjct: 346 MGMFLQNQDAYLNVAGGVKLDEPAVDLAIAVSIASSFRDAPTKPYDVIFGEVGLTGEVRA 405
Query: 528 VSRMEKRVSTVAKLGYRKCIVPKSAEKSL 556
VSR E+RV KLG+++ I+P EKSL
Sbjct: 406 VSRAEQRVREAEKLGFKRVIMP---EKSL 431
>gi|199598517|ref|ZP_03211934.1| DNA repair protein RadA [Lactobacillus rhamnosus HN001]
gi|258540524|ref|YP_003175023.1| DNA repair protein RadA [Lactobacillus rhamnosus Lc 705]
gi|385836161|ref|YP_005873936.1| DNA repair protein RadA [Lactobacillus rhamnosus ATCC 8530]
gi|418072191|ref|ZP_12709463.1| DNA repair protein RadA [Lactobacillus rhamnosus R0011]
gi|199590559|gb|EDY98648.1| DNA repair protein RadA [Lactobacillus rhamnosus HN001]
gi|257152200|emb|CAR91172.1| DNA repair protein RadA [Lactobacillus rhamnosus Lc 705]
gi|355395653|gb|AER65083.1| DNA repair protein RadA [Lactobacillus rhamnosus ATCC 8530]
gi|357537442|gb|EHJ21466.1| DNA repair protein RadA [Lactobacillus rhamnosus R0011]
Length = 454
Score = 353 bits (905), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 196/473 (41%), Positives = 281/473 (59%), Gaps = 29/473 (6%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKP---EEVQP 169
+T +VC +CGY + G C C T+ + + P RT KP +EV
Sbjct: 5 KTQYVCQNCGYISATYLGRCPNCGGWNTLVEETVSSTKSAPRQTRTGSKVKPTRMDEVTV 64
Query: 170 VRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAA 229
+ V G+ +L+ RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++
Sbjct: 65 TKETRVKTGLAELN--------------RVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSG 110
Query: 230 IIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSP 289
+A V+YVSGEES QI RA R+ +A ++LY TD+ I + + P
Sbjct: 111 QLASTG-----GTVLYVSGEESASQIKMRAGRLGVANSGMYLYPETDMPSIENVIDQMQP 165
Query: 290 RALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPR 349
++IDS+QT+ + + + G + Q++E T+ L+R AK + + + GHVTK G IAGP+
Sbjct: 166 DYVVIDSVQTMNVPDMNSAVGSVAQIREVTAELMRIAKSKGVTIFIVGHVTKEGAIAGPK 225
Query: 350 VLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQ 409
+LEH+VD VLY EG+ +YR+LRSVKNRFGST+E+G+FEM Q GLQ V+NPS+IFL E+
Sbjct: 226 ILEHMVDTVLYFEGDMHHTYRILRSVKNRFGSTNEIGIFEMHQNGLQEVANPSEIFLEER 285
Query: 410 HSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVLMKQ 467
+ + G AV V M+G+R L+EIQAL R +G+ +R +I++VL K+
Sbjct: 286 LAGA---TGSAVVVSMEGTRPILVEIQALISPTMYGNAKRTSSGLDHNRVSLIMAVLEKR 342
Query: 468 AGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRM 527
A L LQ +L GV L E A DLA+A AI SS+ + IP F+GEIGL GE+R
Sbjct: 343 ANLMLQNQDAYLKATGGVKLDEPAIDLAMAVAIASSYRDKEIPPTDCFVGEIGLTGEVRR 402
Query: 528 VSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
V+R+E RV AKLG+++ VP++ + + ++ IG ++ E ++ VF
Sbjct: 403 VNRIEDRVKEAAKLGFKRIFVPRNNLQGWR--APKDIQVIGVTSIAEALHKVF 453
>gi|387928139|ref|ZP_10130817.1| DNA repair protein RadA [Bacillus methanolicus PB1]
gi|387587725|gb|EIJ80047.1| DNA repair protein RadA [Bacillus methanolicus PB1]
Length = 460
Score = 353 bits (905), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 198/473 (41%), Positives = 283/473 (59%), Gaps = 24/473 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTM--KRYSAGESDEGPVVQRTWLPQKPEEVQPV 170
+T ++C +CGY +W G C C M + AG P + P+
Sbjct: 5 KTKFICQECGYESPKWMGKCPGCGEWNKMVEEVEPAGIGRRRAFAHSVGSSSVPSKATPI 64
Query: 171 RLLEVNKGMK-QLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAA 229
+E + Q D NE+ RVLG G+V GSLVLIGGDPG+GKSTLLLQ+++
Sbjct: 65 TSIETASEPRIQTDL---------NELNRVLGNGIVKGSLVLIGGDPGIGKSTLLLQVSS 115
Query: 230 IIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSP 289
+A + V+YVSGEES+ Q RADR+ +++E L +YS T++E+I ++ +SP
Sbjct: 116 QLA-----AKNYQVLYVSGEESLRQTKLRADRLGVSSENLLVYSETNLEEISRTIENVSP 170
Query: 290 RALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPR 349
+I+DSIQTV+ V + G + QV+ECT+ L+R AK I V + GHVTK G IAGPR
Sbjct: 171 SFVIVDSIQTVFHPEVTSAPGSVSQVRECTAELMRIAKTKGIAVFIVGHVTKEGSIAGPR 230
Query: 350 VLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQ 409
+LEH+VD VLY EGE+ +YR+LR+VKNRFGST+E+G+FEM + GL+ V NPS+IFL E+
Sbjct: 231 LLEHMVDTVLYFEGERHHTYRILRAVKNRFGSTNEMGIFEMKEFGLEEVENPSEIFLEER 290
Query: 410 HSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMKQ 467
S AG V M+G+R L+EIQAL S R G+ +R ++++VL K+
Sbjct: 291 ---SHGAAGSTVVASMEGTRPVLVEIQALISPSSFGIPRRMATGVDHNRVPLLMAVLEKR 347
Query: 468 AGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRM 527
G+ LQ +L V G+ L E A DLA+A +I SSF + P IGE+GL GE+R
Sbjct: 348 VGMLLQNQDAYLKVAGGIKLDEPAIDLAIAVSIASSFRDKPTRPTDCIIGEVGLTGEVRR 407
Query: 528 VSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
VSR+E+RV AKLG+ + I+P++ G + +E +G ++ + + V
Sbjct: 408 VSRIEQRVQEAAKLGFERVILPQNNLGGWK--GPKGIELVGVSSVSQALQVTL 458
>gi|407978586|ref|ZP_11159415.1| DNA repair protein RadA [Bacillus sp. HYC-10]
gi|407414782|gb|EKF36408.1| DNA repair protein RadA [Bacillus sp. HYC-10]
Length = 459
Score = 353 bits (905), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 195/475 (41%), Positives = 290/475 (61%), Gaps = 32/475 (6%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQ--- 168
++ ++C CGY +W G C C GT + + P +R+ + +Q
Sbjct: 4 TKSKFICQSCGYESAKWMGKCPGC---GTWNSMTEEVVRKEPANRRSAFNHSVQTIQKPS 60
Query: 169 PVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMA 228
P+ +E ++ + RI + E RVLG G+V GSLVLIGGDPG+GKSTLLLQ++
Sbjct: 61 PLSAIETSE-----EPRIKTNL---EEFNRVLGSGIVKGSLVLIGGDPGIGKSTLLLQVS 112
Query: 229 AIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLS 288
A ++D + V+Y+SGEES++Q RADR+ I + L + + TD+E I +Q +
Sbjct: 113 AQLSDKNQ-----NVLYISGEESIKQTKLRADRLGIESASLHVLAETDMEYITSAIQEMK 167
Query: 289 PRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGP 348
P +++DSIQTVY + + G + QV+ECT+ L++ AK IP+ + GHVTK G IAGP
Sbjct: 168 PAFVVVDSIQTVYQSDITSAPGSVSQVRECTAQLMKIAKTNGIPIFIVGHVTKEGSIAGP 227
Query: 349 RVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSE 408
R+LEH+VD VLY EGE+ ++R+LR+VKNRFGST+ELG+FEM + GL V NPS+IFL E
Sbjct: 228 RLLEHMVDTVLYFEGERHHTFRILRAVKNRFGSTNELGIFEMREEGLSEVLNPSEIFLEE 287
Query: 409 QHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVLMK 466
+ S ++G V M+G+R L+EIQAL S R G+ +R ++++VL K
Sbjct: 288 R---SAGVSGSCVVASMEGTRPVLVEIQALISPTSFGNPRRMATGLDHNRVSLLMAVLEK 344
Query: 467 QAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELR 526
+ GL LQ +L V GV L E A DLA+A +I SSF + + FIGE+GL GE+R
Sbjct: 345 RVGLLLQNQDAYLKVAGGVKLDEPAIDLAIAVSIASSFKDAALHQADCFIGEVGLTGEVR 404
Query: 527 MVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQ---MEFIGCKNLKEVINV 578
VSR+E+RV AKLG+++ +P++ G+++ +E +G +N+ E + +
Sbjct: 405 RVSRIEQRVQEAAKLGFKRMFIPQA-----NIDGWKKPRGIELVGVENVAEALRI 454
>gi|395802416|ref|ZP_10481669.1| DNA repair protein RadA [Flavobacterium sp. F52]
gi|395435657|gb|EJG01598.1| DNA repair protein RadA [Flavobacterium sp. F52]
Length = 453
Score = 353 bits (905), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 189/470 (40%), Positives = 299/470 (63%), Gaps = 24/470 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T++ C +CG +W G C AC+ T+ + D+ V ++ Q + +P+++
Sbjct: 5 KTSFFCQNCGTQYAKWQGQCNACKEWNTIAEEIIQKQDK--VAWKSEPTQTSKAPKPLKI 62
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
E++ + R+ + +E+ RVLGGGLVPGSL L+GG+PG+GKSTLLLQ++
Sbjct: 63 NEIDSTQ---EVRMDTTD---SELNRVLGGGLVPGSLTLLGGEPGIGKSTLLLQVS---- 112
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
L P +YVSGEES +QI RA+R+ ++ ++ + T ++I ++++ + P +
Sbjct: 113 ----LKLPYKTLYVSGEESQKQIKMRAERITPNSDNCYILTETKTQNIFKQIETIQPEVV 168
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQT++ + +AG + Q++E T+ L++FAK++NIPV+L GH+TK G+IAGP++LE
Sbjct: 169 IIDSIQTLHTDYIESTAGSISQIRETTAELIKFAKESNIPVILIGHITKDGNIAGPKILE 228
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VL EG++ YR+LRS+KNRFGST ELG++EM GL+ VSNPS+I +S H D
Sbjct: 229 HMVDTVLQFEGDRNHIYRILRSLKNRFGSTSELGIYEMLGSGLREVSNPSEILIS--HKD 286
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
E L+G A+A ++G R +IEIQ+L + T R G A R +MI++VL K+AG
Sbjct: 287 EE-LSGTAIATTLEGMRPLMIEIQSLVSTAVYGTPQRSTTGYNAKRLNMILAVLEKRAGF 345
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
+L +FLNV G+++ + A DLAV AAI SS + P+ G F GE+GL GE+R V+R
Sbjct: 346 RLGAKDVFLNVTGGISVDDPAIDLAVVAAILSSNEDIPVGKGFCFAGEVGLSGEIRPVNR 405
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+++R+ KLG+ V K + +L G ++E + +++V +++F
Sbjct: 406 VDQRIQEAEKLGFDTIFVSKYNKIALKNTGI-KIELVA--KIEDVASILF 452
>gi|258509335|ref|YP_003172086.1| DNA repair protein RadA [Lactobacillus rhamnosus GG]
gi|385828971|ref|YP_005866743.1| DNA repair protein RadA [Lactobacillus rhamnosus GG]
gi|257149262|emb|CAR88235.1| DNA repair protein RadA [Lactobacillus rhamnosus GG]
gi|259650616|dbj|BAI42778.1| DNA repair protein RadA [Lactobacillus rhamnosus GG]
Length = 454
Score = 353 bits (905), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 196/473 (41%), Positives = 281/473 (59%), Gaps = 29/473 (6%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKP---EEVQP 169
+T +VC +CGY + G C C T+ + + P RT KP +EV
Sbjct: 5 KTQYVCQNCGYISATYLGRCPNCGGWNTLVEETISSTKSAPRQTRTGSKVKPTRMDEVTV 64
Query: 170 VRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAA 229
+ V G+ +L+ RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++
Sbjct: 65 TKETRVKTGLAELN--------------RVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSG 110
Query: 230 IIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSP 289
+A V+YVSGEES QI RA R+ +A ++LY TD+ I + + P
Sbjct: 111 QLASTG-----GTVLYVSGEESASQIKMRAGRLGVANSGMYLYPETDMPSIENVIDQMQP 165
Query: 290 RALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPR 349
++IDS+QT+ + + + G + Q++E T+ L+R AK + + + GHVTK G IAGP+
Sbjct: 166 DYVVIDSVQTMNVPDMNSAVGSVAQIREVTAELMRIAKSKGVTIFIVGHVTKEGAIAGPK 225
Query: 350 VLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQ 409
+LEH+VD VLY EG+ +YR+LRSVKNRFGST+E+G+FEM Q GLQ V+NPS+IFL E+
Sbjct: 226 ILEHMVDTVLYFEGDMHHTYRILRSVKNRFGSTNEIGIFEMHQNGLQEVANPSEIFLEER 285
Query: 410 HSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVLMKQ 467
+ + G AV V M+G+R L+EIQAL R +G+ +R +I++VL K+
Sbjct: 286 LAGA---TGSAVVVSMEGTRPILVEIQALISPTMYGNAKRTSSGLDHNRVSLIMAVLEKR 342
Query: 468 AGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRM 527
A L LQ +L GV L E A DLA+A AI SS+ + IP F+GEIGL GE+R
Sbjct: 343 ANLMLQNQDAYLKATGGVKLDEPAIDLAMAVAIASSYRDKEIPPTDCFVGEIGLTGEVRR 402
Query: 528 VSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
V+R+E RV AKLG+++ VP++ + + ++ IG ++ E ++ VF
Sbjct: 403 VNRIEDRVKEAAKLGFKRIFVPRNNLQGWR--APKDIQVIGVTSIAEALHKVF 453
>gi|312869694|ref|ZP_07729841.1| DNA repair protein RadA [Lactobacillus oris PB013-T2-3]
gi|417886869|ref|ZP_12531013.1| DNA repair protein RadA [Lactobacillus oris F0423]
gi|311094743|gb|EFQ53040.1| DNA repair protein RadA [Lactobacillus oris PB013-T2-3]
gi|341593260|gb|EGS36117.1| DNA repair protein RadA [Lactobacillus oris F0423]
Length = 458
Score = 353 bits (905), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 194/474 (40%), Positives = 285/474 (60%), Gaps = 27/474 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRAC-ESVGTMKRYSAGESDEGPVVQRTWLP---QKPEEVQ 168
RT +VC +CGY+ ++ G C C E ++ ES P T L KP+++
Sbjct: 5 RTQYVCQNCGYSSRRYLGRCPNCGEWNSLVEEQVQSESKAAPTRATTTLTGLVAKPQKIS 64
Query: 169 PVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMA 228
+ E + +L NE+ RVLGGG+VPGSL+LIGGDPG+GKSTLLLQ++
Sbjct: 65 EINSKETPRVKTKL-----------NELNRVLGGGIVPGSLILIGGDPGIGKSTLLLQVS 113
Query: 229 AIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLS 288
++D H V+YVSGEES QI RA+R+ ++ +E ++Y T+++ I E ++ L
Sbjct: 114 GQLSDEHH-----RVLYVSGEESGTQIKMRAERLGVSGDEFYVYPETNMDSIKETIRDLK 168
Query: 289 PRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGP 348
P ++IDS+QT+ V+ + G + Q++E T+ L++ AK NI V + GHVTK G +AGP
Sbjct: 169 PEYVVIDSVQTMQATDVSSAIGSVSQIREVTAQLMQIAKSNNITVFVVGHVTKGGALAGP 228
Query: 349 RVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSE 408
++LEH+VD VLY EG+ +YR+LRSVKNRFGST+ELG+FEM GL V NPS+IFL E
Sbjct: 229 KILEHMVDTVLYFEGDLHHTYRILRSVKNRFGSTNELGIFEMHTNGLSEVQNPSEIFLEE 288
Query: 409 QHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMK 466
+ D+ G +V V ++G+R L+EIQAL R G+ +R +I++VL K
Sbjct: 289 RLRDA---TGSSVVVSLEGTRPILVEIQALVTPTVYGNAQRTATGLSRNRVSLIMAVLEK 345
Query: 467 QAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELR 526
+A L LQ +L GV L E A DLA+A +I SS+ + AF+GE+GL GE+R
Sbjct: 346 RANLMLQNQDAYLKAAGGVKLDEPAIDLAIAVSIASSYRDKGTRPADAFVGEVGLTGEIR 405
Query: 527 MVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
V+R+E+RV+ KLG+ + +PK+ K +E +G L+E + +
Sbjct: 406 RVNRIEQRVAEAQKLGFERIFIPKNNLKGWTPP--TGIEVVGVTTLREALRLAL 457
>gi|424797314|ref|ZP_18222912.1| DNA repair protein RadA [Enterococcus faecium S447]
gi|424952058|ref|ZP_18367096.1| DNA repair protein RadA [Enterococcus faecium R496]
gi|424955586|ref|ZP_18370414.1| DNA repair protein RadA [Enterococcus faecium R446]
gi|424967532|ref|ZP_18381225.1| DNA repair protein RadA [Enterococcus faecium P1140]
gi|424995211|ref|ZP_18407108.1| DNA repair protein RadA [Enterococcus faecium ERV168]
gi|424998061|ref|ZP_18409777.1| DNA repair protein RadA [Enterococcus faecium ERV165]
gi|425000470|ref|ZP_18412033.1| DNA repair protein RadA [Enterococcus faecium ERV161]
gi|425004928|ref|ZP_18416211.1| DNA repair protein RadA [Enterococcus faecium ERV102]
gi|425011247|ref|ZP_18422156.1| DNA repair protein RadA [Enterococcus faecium E422]
gi|425017734|ref|ZP_18428230.1| DNA repair protein RadA [Enterococcus faecium C621]
gi|425033076|ref|ZP_18438079.1| DNA repair protein RadA [Enterococcus faecium 515]
gi|402921278|gb|EJX41734.1| DNA repair protein RadA [Enterococcus faecium S447]
gi|402927774|gb|EJX47704.1| DNA repair protein RadA [Enterococcus faecium R496]
gi|402948322|gb|EJX66470.1| DNA repair protein RadA [Enterococcus faecium R446]
gi|402954161|gb|EJX71805.1| DNA repair protein RadA [Enterococcus faecium P1140]
gi|402977981|gb|EJX93749.1| DNA repair protein RadA [Enterococcus faecium ERV168]
gi|402984306|gb|EJX99624.1| DNA repair protein RadA [Enterococcus faecium ERV165]
gi|402988116|gb|EJY03138.1| DNA repair protein RadA [Enterococcus faecium ERV102]
gi|402989106|gb|EJY04059.1| DNA repair protein RadA [Enterococcus faecium ERV161]
gi|402997566|gb|EJY11883.1| DNA repair protein RadA [Enterococcus faecium E422]
gi|403003796|gb|EJY17652.1| DNA repair protein RadA [Enterococcus faecium C621]
gi|403011404|gb|EJY24716.1| DNA repair protein RadA [Enterococcus faecium 515]
Length = 465
Score = 352 bits (904), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 204/477 (42%), Positives = 287/477 (60%), Gaps = 30/477 (6%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQP 169
K ++ +VC +CGY ++ G C C TM E ++ +RT E+ +P
Sbjct: 12 KKSKVQFVCQNCGYVSPKFLGRCPNCGKWNTM----VEEIEQDTTDRRTRTSLTGEKAKP 67
Query: 170 VRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAA 229
++ +V + + + RI E+ RVLGGG+VPGS+VLIGGDPG+GKSTLLLQ++
Sbjct: 68 TKIADV---VPKKEPRIKTKL---EELNRVLGGGVVPGSMVLIGGDPGIGKSTLLLQVSQ 121
Query: 230 IIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSP 289
+A + V+YVSGEES EQI RA+R+ E +LY+ TD+ +I ++ +SP
Sbjct: 122 QLAAIG-----GKVLYVSGEESAEQIKLRAERLGSINTEFYLYAETDMNEISRAIEHISP 176
Query: 290 RALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPR 349
+IIDSIQT+ + AG + QV+E T+ LL+ AK I + + GHVTK G IAGPR
Sbjct: 177 DYVIIDSIQTMTQPDITSVAGSVSQVRETTAELLKTAKTNGIAIFIVGHVTKEGSIAGPR 236
Query: 350 VLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQ 409
+LEH+VD VLY EGE+ S+R+LR+VKNRFGST+E+G+FEM + GL+ V+NPS+IFL E+
Sbjct: 237 MLEHMVDTVLYFEGEQHHSFRILRAVKNRFGSTNEIGIFEMHEHGLEEVANPSQIFLEER 296
Query: 410 HSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQ 467
+ G A+ V M+G+R L+EIQAL R G+ +R +I++VL K+
Sbjct: 297 LDGA---TGSAIVVAMEGTRPILVEIQALVTPTMFGNAKRTTTGLDFNRVSLIMAVLEKR 353
Query: 468 AGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRM 527
AGL LQ +L GV L E A DLA+A +I SS+ E FIGEIGL GE+R
Sbjct: 354 AGLLLQNQDAYLKAAGGVKLNEPAIDLAIAVSIASSYKEKGTQPTECFIGEIGLTGEIRR 413
Query: 528 VSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGF----EQMEFIGCKNLKEVINVVF 580
VS +E+RV V KLG+ K +PK+ LG + +E +G L E + VF
Sbjct: 414 VSHIEQRVKEVQKLGFTKVYLPKN------NLGNWEAPKGIEIVGVATLAETLKRVF 464
>gi|397903986|ref|ZP_10504919.1| DNA repair protein RadA [Caloramator australicus RC3]
gi|343178730|emb|CCC57818.1| DNA repair protein RadA [Caloramator australicus RC3]
Length = 454
Score = 352 bits (904), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 197/470 (41%), Positives = 286/470 (60%), Gaps = 24/470 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T ++C +CGY +W G C C S T E +Q +VQP+++
Sbjct: 5 KTVYICQECGYESPKWMGKCPGCGSWNTFIEEVKAEKLSK--IQSAAY----NKVQPLKI 58
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
++ + K++ + L E+ RVLGGG+V GSLVL+GGDPG+GKSTLLLQMA +A
Sbjct: 59 QDI-EITKEIRYSTYLE-----ELDRVLGGGIVKGSLVLVGGDPGIGKSTLLLQMANNVA 112
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
++ V+YVSGEES +QI RA+R+ + +E L + T++ I E + L P +
Sbjct: 113 KSGNI-----VLYVSGEESSKQIKLRAERLNVLSENLLVLPETNLSYIEETITNLKPDVV 167
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
+IDSIQTVY + + G + QV+E T+ L+ AK NI + GHVTK G IAGPRVLE
Sbjct: 168 VIDSIQTVYRPELQSAPGSVSQVREATAVLMNIAKNLNIATFIVGHVTKEGSIAGPRVLE 227
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EGE+ ++YR+LR+VKNRFGST+E+GVFEM Q GL+ V NPS+I LS + D
Sbjct: 228 HMVDTVLYFEGERHNTYRVLRAVKNRFGSTNEIGVFEMKQFGLEEVKNPSEILLSGRPKD 287
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVLMKQAGL 470
+ G V M+G+R LIE+QAL S R G+ +R ++I+VL K+ G+
Sbjct: 288 ---VPGSCVVCSMEGTRPILIEVQALTSQTSFGMPRRMTTGLDYNRVILLIAVLEKRVGM 344
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
+Q +++NV G+ + E A DL V +I SSF PI N + IGE+GL GE+R V+
Sbjct: 345 HIQTYDVYVNVAGGIKIDEPAIDLGVLCSIASSFKNLPIDNEVVIIGEVGLTGEVRGVNL 404
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
++KR+ KLG++KCI+PK K L + + ++ + +N+ E + V
Sbjct: 405 IDKRILEAQKLGFKKCIIPKENMKGLDII--KGIQIVPVENIYEALEEVL 452
>gi|310644234|ref|YP_003948993.1| DNA repair protein rada [Paenibacillus polymyxa SC2]
gi|309249185|gb|ADO58752.1| DNA repair protein radA [Paenibacillus polymyxa SC2]
gi|392304927|emb|CCI71290.1| radA-like DNA repair protein [Paenibacillus polymyxa M1]
Length = 457
Score = 352 bits (904), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 207/449 (46%), Positives = 282/449 (62%), Gaps = 27/449 (6%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQR---TWLPQKPEEVQP 169
+T + C++CGY +W+G C C++ +M E E V + + L + +P
Sbjct: 5 KTKFSCTECGYESPKWYGKCPGCQAWNSMV-----EETESVVKTQGMGSSLLTHSTKDKP 59
Query: 170 VRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAA 229
+ ++EV G + RI L+G+ E+ RVLGGG+VPGSLVL+GGDPG+GKSTL+LQ +
Sbjct: 60 LPIIEVESGK---ETRI-LTGI--GELNRVLGGGVVPGSLVLVGGDPGIGKSTLMLQTSN 113
Query: 230 IIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSP 289
+A V+YVSGEESV Q RADR+ + L++ T++E I E V L P
Sbjct: 114 ELALTG-----LKVLYVSGEESVRQTKLRADRLGALSPSLYVLCETNLETIEEAVDSLKP 168
Query: 290 RALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPR 349
L+IDSIQTVYL V + G + QV+ECTS +R AK I +L GHVTK G IAGPR
Sbjct: 169 EFLVIDSIQTVYLPEVTSAPGSVAQVRECTSRFMRIAKGLGIATVLVGHVTKEGAIAGPR 228
Query: 350 VLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQ 409
+LEH+VD VLY EGE+ +YRLLR+VKNRFGST+E+G+FEM++ GL+ V+NPS++FLSE+
Sbjct: 229 LLEHMVDCVLYFEGERHHTYRLLRAVKNRFGSTNEIGIFEMAESGLREVANPSELFLSER 288
Query: 410 HSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVS--RHVNGIQASRADMIISVLMKQ 467
+AG V M+G+R L+E+QAL + S R GI R +II+VL K+
Sbjct: 289 PLG---VAGSTVVASMEGTRPVLVELQALIAATHFPSPRRMGTGIDHHRMGLIIAVLEKR 345
Query: 468 AGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRM 527
G+ LQ +LNV GV L E A DLA+A +I SSF + P GE+GL GE+R
Sbjct: 346 MGMFLQNQDAYLNVAGGVKLDEPAVDLAIAVSIASSFRDAPTKPYDVIFGEVGLTGEVRA 405
Query: 528 VSRMEKRVSTVAKLGYRKCIVPKSAEKSL 556
VSR E+RV KLG+++ I+P EKSL
Sbjct: 406 VSRAEQRVREAEKLGFKRVIMP---EKSL 431
>gi|334136736|ref|ZP_08510193.1| DNA repair protein RadA [Paenibacillus sp. HGF7]
gi|333605757|gb|EGL17114.1| DNA repair protein RadA [Paenibacillus sp. HGF7]
Length = 455
Score = 352 bits (904), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 209/456 (45%), Positives = 280/456 (61%), Gaps = 41/456 (8%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRAC-------ESVGTMKRYSAGESDEGPVVQRTWLPQKP 164
+T ++C CGY +W G C C E V T+ + S ++L K
Sbjct: 4 TKTKFICQQCGYETPKWLGKCPGCGAWNSFAEEVETVVKTQGMNS--------SFLRTKE 55
Query: 165 EEVQPVRLLEVNKGMKQLDWRIPLSGLFGN-EVARVLGGGLVPGSLVLIGGDPGVGKSTL 223
+P ++ + ++Q R+ L N E+ RVLGGG VPGSL+L+GGDPG+GKSTL
Sbjct: 56 ---KPTPIINIESSVEQ---RV----LTDNGELNRVLGGGFVPGSLILVGGDPGIGKSTL 105
Query: 224 LLQMAAIIADVHDL-GEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVE 282
LLQ + H L E V+Y+SGEES+ Q RADR+ + L++ T++E + E
Sbjct: 106 LLQTS------HSLTKEGRKVLYISGEESIRQTKLRADRLDAVSPNLYVLCETNMEVVEE 159
Query: 283 KVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKS 342
+Q + P L+IDSIQTVY V+ + G + QV+ECTS +R AK NI +L GHVTK
Sbjct: 160 AIQEVQPDFLVIDSIQTVYHPSVSSAPGTVSQVRECTSHFMRIAKLKNIATVLVGHVTKE 219
Query: 343 GDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPS 402
G IAGPR+LEH+VD VLY EGE+ +YR+LR+VKNRFGST+E+G+FEM + GL VSNPS
Sbjct: 220 GAIAGPRLLEHMVDCVLYFEGERHHTYRVLRAVKNRFGSTNEIGIFEMRETGLAEVSNPS 279
Query: 403 KIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVS--RHVNGIQASRADMI 460
++FLSE+ +AG V M+G+R L+EIQAL S + S R GI +R +I
Sbjct: 280 ELFLSERPLG---VAGSTVVASMEGTRPVLVEIQALVSSTNFPSPRRMATGIDHNRLSLI 336
Query: 461 ISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIG 520
++VL K+ GL LQ +LNV GV L E A DLAVA +I SSF E P A GEIG
Sbjct: 337 MAVLEKRVGLFLQSQDAYLNVAGGVKLDEPAVDLAVAISIASSFKEQPTQAYDAVFGEIG 396
Query: 521 LGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSL 556
L GE+R VSR+++RV KLG+R+ I+P EKSL
Sbjct: 397 LTGEVRGVSRIDQRVKEAQKLGFRRVIMP---EKSL 429
>gi|261880514|ref|ZP_06006941.1| DNA repair protein RadA [Prevotella bergensis DSM 17361]
gi|270332736|gb|EFA43522.1| DNA repair protein RadA [Prevotella bergensis DSM 17361]
Length = 469
Score = 352 bits (904), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 190/476 (39%), Positives = 286/476 (60%), Gaps = 18/476 (3%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQP-V 170
++T +VCS+CGY +W G C AC + K + + + + + P +
Sbjct: 4 DKTMYVCSNCGYDSSKWLGKCPACGEWASFKEIKVANTSGTSAAKSAAMTIRHGDKHPHL 63
Query: 171 RLLEVNKGMKQLDWRI---PLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQM 227
L NK ++ D P E RVLGGG+VPGS++L+GG+PG+GKSTL LQ
Sbjct: 64 HLDSQNKPLRLHDISSKDEPRIDTHDAEFNRVLGGGIVPGSIILLGGEPGIGKSTLTLQT 123
Query: 228 AAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMM-IATEELFLYSSTDIEDIVEKVQP 286
+ + ++YVSGEES QI RA+R+ + E +F+ T +E+I +Q
Sbjct: 124 ILSMTE-------RRILYVSGEESAHQIKMRAERLNPVNPESIFVLCETSLENIFGHIQE 176
Query: 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIA 346
+ P LIIDS+QT+ V S G + QV+EC SALLRFAK + +PV+L GH+ K G +A
Sbjct: 177 VMPELLIIDSVQTISTETVDSSPGSVTQVRECASALLRFAKTSGVPVVLIGHINKEGTLA 236
Query: 347 GPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFL 406
GP++LEHIVD V+ EG++ YR+LRS+KNRFGST ELG++EM Q GL+ VSNPS++ L
Sbjct: 237 GPKILEHIVDTVIQFEGDQHYMYRILRSIKNRFGSTSELGIYEMRQNGLRQVSNPSELLL 296
Query: 407 SEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVL 464
+E H + L+G+A++ ++G R FL+E QAL S + T R G R +M+++VL
Sbjct: 297 TEDH---DGLSGVAISSAIEGVRPFLVETQALVSSAAYGTPQRSATGFDQRRLNMLLAVL 353
Query: 465 MKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGE 524
K+ G KL + +FLN+ G+ +T+ A DL+V AA+ SS ++ P+ +G GE+GL GE
Sbjct: 354 EKRVGFKLMQKDVFLNIAGGLRVTDMAMDLSVIAAVLSSNVDTPVESGWCMCGEVGLSGE 413
Query: 525 LRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+R VSR+E+R++ KLG+ I+P K+L + +E K ++ + +F
Sbjct: 414 VRPVSRVEQRIAEAEKLGFNHIILPSHNVKNLNATKY-NIELHPVKKVEGALRYLF 468
>gi|226309776|ref|YP_002769670.1| DNA repair protein RadA [Brevibacillus brevis NBRC 100599]
gi|226092724|dbj|BAH41166.1| probable DNA repair protein RadA [Brevibacillus brevis NBRC 100599]
Length = 455
Score = 352 bits (903), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 202/482 (41%), Positives = 286/482 (59%), Gaps = 47/482 (9%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T + C +CGY +W G C C S T+ EEV V+
Sbjct: 5 KTKYACQECGYESPKWMGKCPGCSSWNTLV----------------------EEVT-VKT 41
Query: 173 LEVNKGMK--QLDWRIPLSGLFGN----------EVARVLGGGLVPGSLVLIGGDPGVGK 220
++GM Q IPL+ + E+ RVLGGGLVPGSL+L+GGDPG+GK
Sbjct: 42 AHRHEGMSGGQRQSAIPLTQVASEEDPRMDTTIGELNRVLGGGLVPGSLILVGGDPGIGK 101
Query: 221 STLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDI 280
STLLLQ + +A + + V+YVSGEES +QI RADR+ + T +F+ + D++ I
Sbjct: 102 STLLLQTSFALAH-----QGAKVLYVSGEESAKQIKIRADRLHLQTPPMFVLAENDLDLI 156
Query: 281 VEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVT 340
+ + + P LIIDSIQTV+ + +AG + QV+E T+ L+R AK I + GHVT
Sbjct: 157 EQHINQVDPDVLIIDSIQTVFHPTIQSAAGSVAQVREATAQLMRIAKGKGIGTFIVGHVT 216
Query: 341 KSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSN 400
K G IAGPR+LEH+VDAVLY EGE+ +++R+LR+VKNRFGST+E+G+FEM GL+ V+N
Sbjct: 217 KEGSIAGPRMLEHMVDAVLYFEGERHNTFRILRAVKNRFGSTNEIGIFEMKDRGLEEVAN 276
Query: 401 PSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVS--RHVNGIQASRAD 458
PS+IFL+E+ +AG V M+G+R L+E+QAL S V+ R G+ R
Sbjct: 277 PSEIFLAERPFG---VAGSTVVASMEGTRPVLVELQALVAPTSFVTPRRTATGVDHQRVA 333
Query: 459 MIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGE 518
MI++VL K+ G+ LQ ++NV GV L E A DLA+A +I SSF + IGE
Sbjct: 334 MIMAVLEKRMGMMLQNQDAYVNVAGGVRLDEPAVDLAIAVSIASSFRDHATNPHDVVIGE 393
Query: 519 IGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINV 578
IGL GE+R VSR+E+RV KLG+++ I+P+ + L ++ IG N+ + +N
Sbjct: 394 IGLTGEVRGVSRIEQRVREAHKLGFKRVIIPEKNIRGLDAPA--DIQVIGVSNIADALNE 451
Query: 579 VF 580
V
Sbjct: 452 VI 453
>gi|398813141|ref|ZP_10571843.1| DNA repair protein RadA [Brevibacillus sp. BC25]
gi|398039302|gb|EJL32440.1| DNA repair protein RadA [Brevibacillus sp. BC25]
Length = 455
Score = 352 bits (903), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 202/477 (42%), Positives = 284/477 (59%), Gaps = 37/477 (7%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTM------KRYSAGESDEGPVVQRTW-LPQKPE 165
+T + C +CGY +W G C C S T+ K E G Q L Q
Sbjct: 5 KTKYACQECGYESPKWMGKCPGCSSWNTLVEEVTVKNAHRHEGMSGGQRQSAIPLTQVAS 64
Query: 166 EVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLL 225
E +P ++D I E+ RVLGGGLVPGSL+L+GGDPG+GKSTLLL
Sbjct: 65 EEEP-----------RMDTTI-------GELNRVLGGGLVPGSLILVGGDPGIGKSTLLL 106
Query: 226 QMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQ 285
Q + +A + + V+YVSGEES +QI RADR+ + T +F+ + D++ I + +
Sbjct: 107 QTSFALAH-----QGAKVLYVSGEESAKQIKIRADRLHLQTPPMFVLAENDLDLIEQHIN 161
Query: 286 PLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDI 345
+ P LIIDSIQTV+ + +AG + QV+E T+ L+R AK I + GHVTK G I
Sbjct: 162 QVDPDVLIIDSIQTVFHPTIQSAAGSVAQVREATARLMRIAKGKGIGTFIVGHVTKEGSI 221
Query: 346 AGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIF 405
AGPR+LEH+VDAVLY EGE+ +++R+LR+VKNRFGST+E+G+FEM GL+ V+NPS+IF
Sbjct: 222 AGPRMLEHMVDAVLYFEGERHNTFRILRAVKNRFGSTNEIGIFEMKDRGLEEVANPSEIF 281
Query: 406 LSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVS--RHVNGIQASRADMIISV 463
L+E+ +AG V M+G+R L+E+QAL S V+ R G+ R MI++V
Sbjct: 282 LAERPFG---VAGSTVVASMEGTRPVLVELQALVAPTSFVTPRRTATGVDHQRVGMIMAV 338
Query: 464 LMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGG 523
L K+ G+ LQ ++NV GV L E A DLA+A +I SSF + IGEIGL G
Sbjct: 339 LEKRMGMMLQNQDAYVNVAGGVRLDEPAVDLAIAVSIASSFRDHATNPHDVVIGEIGLTG 398
Query: 524 ELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
E+R VSR+E+RV KLG+++ I+P+ + L ++ IG N+ + +N V
Sbjct: 399 EVRGVSRIEQRVREAHKLGFKRVIIPEKNIRGLDAPA--DIQVIGVSNIADALNEVI 453
>gi|393786514|ref|ZP_10374650.1| DNA repair protein RadA [Bacteroides nordii CL02T12C05]
gi|392660143|gb|EIY53760.1| DNA repair protein RadA [Bacteroides nordii CL02T12C05]
Length = 455
Score = 352 bits (903), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 192/470 (40%), Positives = 285/470 (60%), Gaps = 22/470 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T +VCS+CG +W G C +C G Y + P +R + +P+ L
Sbjct: 5 KTVYVCSNCGQDSPKWVGKCPSC---GEWNTYVEEIVRKEPTNRRPVSGINTAKAKPITL 61
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
E+ + P + E+ RVLGGGLVPGSLVLIGG+PG+GKSTL+LQ +
Sbjct: 62 NEIEADDE------PRIDMHDEELNRVLGGGLVPGSLVLIGGEPGIGKSTLVLQTVLRMP 115
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+ V+Y+SGEES Q+ RADR+ A+ + + T +E I ++ +P +
Sbjct: 116 ERR-------VLYISGEESARQLKLRADRLTTASSDCLIVCETSLEQIYVHIKNTNPDLV 168
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQT+ + S G + QV+EC++++LRFAK+T+ PVLL GH+ K G IAGP+VLE
Sbjct: 169 IIDSIQTISTENIESSPGSIAQVRECSASILRFAKETHTPVLLIGHINKEGSIAGPKVLE 228
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
HIVDAVL EG++ YR+LRS+KNRFGST ELG++EM Q GL+ VSNPS++ LS+ H
Sbjct: 229 HIVDAVLQFEGDQHYMYRILRSIKNRFGSTAELGIYEMRQDGLRQVSNPSELLLSQDH-- 286
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
E ++G+A+A ++G R FLIE QAL S R G R +M+++VL K+ G
Sbjct: 287 -EGMSGVAIASAIEGVRPFLIETQALVSSAVYGNPQRSATGFDLRRMNMLLAVLEKRVGF 345
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
KL + +FLN+ G+ + + A DLAV +AI SS ++ I + GEIGL GE+R V+R
Sbjct: 346 KLAQKDVFLNIAGGLKVNDPAIDLAVISAILSSNMDASIEPEVCMAGEIGLSGEIRPVNR 405
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+E+R+ KLG+++ ++PK + + T ++E + + ++E +F
Sbjct: 406 IEQRIGEAEKLGFKRILLPKHNLQGIDTKKI-KIELVPVRKVEEAFRTLF 454
>gi|332685568|ref|YP_004455342.1| DNA repair protein RadA [Melissococcus plutonius ATCC 35311]
gi|332369577|dbj|BAK20533.1| DNA repair protein RadA [Melissococcus plutonius ATCC 35311]
Length = 456
Score = 352 bits (903), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 200/478 (41%), Positives = 283/478 (59%), Gaps = 30/478 (6%)
Query: 109 GKANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQ 168
K ++ + C CGY ++ G C C +M ++ + +RT + ++VQ
Sbjct: 2 AKKTKSQFECQSCGYVSPKYLGRCPNCGKWNSMTEEIIQDTTD----RRTRISLTGKKVQ 57
Query: 169 PVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMA 228
P RL EV + + P E+ RVLGGG+VPGSL+LIGGDPG+GKSTLLLQ++
Sbjct: 58 PQRLTEV------IPKKEPRIKTQLAELNRVLGGGVVPGSLLLIGGDPGIGKSTLLLQVS 111
Query: 229 AIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLS 288
+A + V+YVSGEES EQI RA+R+ E +LY+ TD+ I + ++ L
Sbjct: 112 QQLAMIG-----GKVLYVSGEESAEQIKMRAERLGTINTEFYLYAETDMSSIAKSIEELM 166
Query: 289 PRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGP 348
P +IIDSIQT+ + AG + QV+E T+ LL+ AK NI + + GHVTK G IAGP
Sbjct: 167 PDYVIIDSIQTMTQPDITSVAGSVSQVRETTAELLKLAKTNNIAIFIVGHVTKEGSIAGP 226
Query: 349 RVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSE 408
R+LEH+VD VLY EG+K ++R+LR+VKNRFGST+E+G+FEM GL V+NPS+ FL E
Sbjct: 227 RMLEHMVDTVLYFEGDKHHTFRILRTVKNRFGSTNEIGIFEMHDYGLTEVTNPSQTFLEE 286
Query: 409 QHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMK 466
+ +D AG A+ ++G+R L+EIQAL T R G+ +R +I++VL K
Sbjct: 287 RLADD---AGSAIVAALEGTRPILVEIQALITPTVFGTAKRTTTGLDFNRVSLIMAVLEK 343
Query: 467 QAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELR 526
+AGL LQ +L GV + E A DLA+A +I SS+ E FIGEIGL GE+R
Sbjct: 344 RAGLLLQNQDAYLKAAGGVKINEPAIDLAIAVSIASSYKEKGTKASECFIGEIGLTGEIR 403
Query: 527 MVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGF----EQMEFIGCKNLKEVINVVF 580
V+ +E+RV KLG+ K +PK+ LG + +E +G + E I +F
Sbjct: 404 RVANVEQRVREAQKLGFTKIYLPKN------NLGGWTPPKGIEVVGVMTISETIKKIF 455
>gi|423335824|ref|ZP_17313595.1| DNA repair protein RadA [Lactobacillus reuteri ATCC 53608]
gi|337729047|emb|CCC04170.1| DNA repair protein RadA [Lactobacillus reuteri ATCC 53608]
Length = 457
Score = 352 bits (903), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 195/471 (41%), Positives = 286/471 (60%), Gaps = 30/471 (6%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTW----LPQKPEEVQ 168
RT +VC +CGY ++ G C C T+ E+ P + T L KP+++
Sbjct: 5 RTQYVCQNCGYNSPRYLGRCPNCGEWNTLVEEQV-EASSAPTKKATTTLTGLVAKPQKIN 63
Query: 169 PVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMA 228
+ E + +L NE+ RVLGGG+VPGSL+LIGGDPG+GKSTLLLQ++
Sbjct: 64 EIDSTETPRVKTKL-----------NELNRVLGGGIVPGSLILIGGDPGIGKSTLLLQVS 112
Query: 229 AIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLS 288
++D H V+YVSGEES QI RA+R+ +A ++ ++Y T+++ I + ++ L
Sbjct: 113 GQLSDEH-----HRVLYVSGEESGTQIKMRAERLKVAGDDFYVYPETNMDSIRDTIRDLK 167
Query: 289 PRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGP 348
P ++IDS+QT+ V+ + G + Q++E T+ L++ AK NI + + GHVTK G IAGP
Sbjct: 168 PEYVVIDSVQTMQATDVSSAIGSVSQIREVTAQLMQIAKSNNITIFVVGHVTKGGAIAGP 227
Query: 349 RVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSE 408
++LEH+VD VLY EG+ +YR+LRSVKNRFGST+ELG+FEM GL V NPS+IFL E
Sbjct: 228 KILEHMVDTVLYFEGDLHHTYRILRSVKNRFGSTNELGIFEMHTNGLTEVKNPSEIFLEE 287
Query: 409 QHSDSEFLAGLAVAVIMDGSRSFLIEIQAL---CVSGSTVSRHVNGIQASRADMIISVLM 465
+ D+ G AV V ++G+R L+EIQAL V G+ R G+ +R +I++VL
Sbjct: 288 RLHDA---TGSAVVVSLEGTRPILVEIQALVTPTVYGN-AQRTATGLSRNRVSLIMAVLE 343
Query: 466 KQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGEL 525
K+A L LQ +L GV L E A DLA+A +I SS+ + AF+GE+GL GE+
Sbjct: 344 KRANLMLQNQDAYLKAAGGVKLDEPAIDLAIAVSIASSYRDKGTQPTDAFVGEVGLTGEI 403
Query: 526 RMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVI 576
R V+R+E+RV+ KLG+++ + K+ K ++ IG LKE +
Sbjct: 404 RRVNRIEQRVAEAEKLGFKRIFISKNNLKGWKP--STNIQVIGVSTLKEAL 452
>gi|227529483|ref|ZP_03959532.1| DNA repair protein RadA [Lactobacillus vaginalis ATCC 49540]
gi|227350568|gb|EEJ40859.1| DNA repair protein RadA [Lactobacillus vaginalis ATCC 49540]
Length = 459
Score = 352 bits (903), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 196/477 (41%), Positives = 290/477 (60%), Gaps = 32/477 (6%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTM-----KRYSAGESDEGPVVQRTWLPQKPEEV 167
+T +VC +CGY ++ G C C T+ + S+ + + P T L KP+++
Sbjct: 5 KTQYVCQNCGYNSPRYLGRCPNCGEWNTLVEEQIQSSSSSAATKRPTTTLTGLVAKPQKI 64
Query: 168 QPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQM 227
+ E + +L NE+ RVLGGG+VPGSL+LIGGDPG+GKSTLLLQ+
Sbjct: 65 GEINSHETPRVKTKL-----------NELNRVLGGGIVPGSLILIGGDPGIGKSTLLLQV 113
Query: 228 AAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPL 287
+ ++ H V+YVSGEES QI RA+R+ +A ++ ++Y T+++ I + ++ L
Sbjct: 114 SGQLSSEH-----HRVLYVSGEESATQIKMRAERLDVAADDFYIYPETNMDSIKDTIREL 168
Query: 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAG 347
P ++IDS+QT+ V + G + Q++E T+ L++ AK NI + + GHVTK G IAG
Sbjct: 169 KPEYVVIDSVQTMQATDVTSAIGSVSQIREVTAQLMQIAKSNNITIFVVGHVTKGGAIAG 228
Query: 348 PRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLS 407
P++LEH+VD VLY EG+ +YR+LRSVKNRFGST+ELG+FEM GL V NPS+IFL
Sbjct: 229 PKILEHMVDTVLYFEGDLHHTYRILRSVKNRFGSTNELGIFEMHTNGLSEVKNPSEIFLE 288
Query: 408 EQHSDSEFLAGLAVAVIMDGSRSFLIEIQAL---CVSGSTVSRHVNGIQASRADMIISVL 464
E+ D+ G AV V ++G+R L+EIQAL V G+ R G+ +R +I++VL
Sbjct: 289 ERLKDA---TGSAVVVSLEGTRPILVEIQALVTPTVYGN-AQRTATGLNRNRVSLIMAVL 344
Query: 465 MKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGE 524
K+A L LQ +L GV L E A DLA+A +I SS+ + AF+GE+GL GE
Sbjct: 345 EKRANLMLQNQDAYLKAAGGVKLDEPAIDLAIAISIASSYRDKGTQATDAFVGEVGLTGE 404
Query: 525 LRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSL-ATLGFEQMEFIGCKNLKEVINVVF 580
+R V+R+E+RV+ KLG+++ VPK+ K A G +E IG L++ + +
Sbjct: 405 IRRVNRIEQRVAEAQKLGFKRIFVPKNNLKGWQAPTG---IEVIGVTTLRQALRLAL 458
>gi|195977371|ref|YP_002122615.1| DNA repair protein RadA [Streptococcus equi subsp. zooepidemicus
MGCS10565]
gi|225869306|ref|YP_002745254.1| DNA repair protein [Streptococcus equi subsp. zooepidemicus]
gi|195974076|gb|ACG61602.1| DNA repair protein RadA-like [Streptococcus equi subsp.
zooepidemicus MGCS10565]
gi|225702582|emb|CAX00589.1| putative DNA repair protein [Streptococcus equi subsp.
zooepidemicus]
Length = 453
Score = 352 bits (903), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 199/470 (42%), Positives = 285/470 (60%), Gaps = 24/470 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+ ++C +CGY ++ G C C + + E E V+ + E+ +P++L
Sbjct: 5 KARFICGECGYQSPKYLGRCPNCSAWSSFV-----EETEVKDVKNARISLTGEKSKPIKL 59
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
VN G++ + + NE RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ +A
Sbjct: 60 KHVN-GVRYQRIQTEM-----NEFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSIQLA 113
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
D V+YVSGEES EQI R+DR+ + +LY+ T+++ I +++ + P L
Sbjct: 114 D------KGTVLYVSGEESAEQIKMRSDRLGQTDNDFYLYAETNMQAIRAEIEAIQPDFL 167
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQT+ ++G G + QV+E T+ LL+ AK +I + GHVTK G +AGPR+LE
Sbjct: 168 IIDSIQTIMSPEISGVQGSVSQVREVTAELLQLAKSNHIATFIVGHVTKEGTLAGPRMLE 227
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+F+M GL V NPS++FL E+
Sbjct: 228 HMVDTVLYFEGERHHTFRILRAVKNRFGSTNEIGIFDMQSGGLVEVLNPSQVFLEERLDG 287
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
+ G AV V M+GSR L E+QAL R G+ +R +I++VL K+ GL
Sbjct: 288 A---TGSAVVVTMEGSRPILAEVQALVTPTVFGNARRTTTGLDFNRVSLIMAVLEKRCGL 344
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ +L GV L E A DLAVA AI SS+ E P AF+GEIGL GE+R V+R
Sbjct: 345 LLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTNPQEAFLGEIGLTGEIRRVTR 404
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+E+R++ AKLG+ K PKS+ + + +E +G + EV+ VF
Sbjct: 405 IEQRINEAAKLGFTKLYAPKSSLQGIDIP--SGIEVVGVMTVGEVLKAVF 452
>gi|404494436|ref|YP_006718542.1| DNA repair protein RadA [Pelobacter carbinolicus DSM 2380]
gi|77546437|gb|ABA89999.1| DNA repair protein RadA [Pelobacter carbinolicus DSM 2380]
Length = 460
Score = 352 bits (903), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 201/472 (42%), Positives = 279/472 (59%), Gaps = 27/472 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T ++C CGY +W G C C M E E P R P+ P RL
Sbjct: 13 KTFYICQQCGYQSLKWLGKCPDCGQWDVMVE----ERREPPTASRRG--GAPQTTAPQRL 66
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
+V ++ L GL +E+ RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ +A
Sbjct: 67 SDVATTEEERC----LCGL--SELDRVLGGGVVPGSLVLIGGDPGIGKSTLLLQAVGSLA 120
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+ PV+YV+ EES Q+ R +R+ + ++LFL T +E I+E+V+ L PR L
Sbjct: 121 SI------GPVLYVTAEESARQVKMRGERLRVNAKDLFLVPETSLETILERVRELKPRFL 174
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
++DSIQT++ + + G + QV+EC L+ AK + + GHVTK G IAGPR+LE
Sbjct: 175 VVDSIQTIFTGDLESAPGSVSQVRECAGRLMHLAKGQGVSTFITGHVTKDGAIAGPRMLE 234
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EG+ YR+LR+VKNRFGST+E+GVFEM + GL V NPS++FL+E+
Sbjct: 235 HMVDTVLYFEGDAGHPYRILRAVKNRFGSTNEIGVFEMKEGGLAEVPNPSELFLAER--- 291
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVS---RHVNGIQASRADMIISVLMKQAG 469
E G V ++GSR L+E+QAL VS ST R GI +R ++++VL K+ G
Sbjct: 292 PEGAPGSVVVPTLEGSRPILVELQAL-VSVSTFGQPRRTAIGIDPNRVALLVAVLEKKVG 350
Query: 470 LKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVS 529
L + IF NV GV L+E DL V AA+ SS L P+P + GE+GL GE+R VS
Sbjct: 351 LSMLSQDIFFNVAGGVRLSEPGADLGVIAALASSHLNRPVPGKLMLFGEVGLAGEVRAVS 410
Query: 530 RMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVFT 581
R E RV A+LG+ +C +P K++ ME G ++++E ++ VF
Sbjct: 411 RPELRVREAARLGFDRCYLPAGCLKAVEAP--PGMELRGVRSVEEALDEVFA 460
>gi|380692445|ref|ZP_09857304.1| DNA repair protein RadA [Bacteroides faecis MAJ27]
Length = 455
Score = 352 bits (902), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 191/470 (40%), Positives = 286/470 (60%), Gaps = 22/470 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T +VCS+CG +W G C +C G Y + P +R + ++ +P+ L
Sbjct: 5 KTVYVCSNCGQDSPKWVGKCPSC---GEWNTYVEEIVRKEPTNRRPVSGIETQKAKPIIL 61
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
E+ + P + E+ RVLGGGLVPGSLVLIGG+PG+GKSTL++Q +
Sbjct: 62 SEIEADDE------PRINMHDEELNRVLGGGLVPGSLVLIGGEPGIGKSTLVMQTVLRMP 115
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
D ++YVSGEES Q+ RADR+ + + F+ T +E I ++ +P +
Sbjct: 116 D-------KKILYVSGEESARQLKLRADRLSDVSSDCFIVCETSLEHIYVHIKNTNPDLV 168
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQT+ + S G + QV+EC++++LRFAK+T+ PVLL GH+ K G IAGP+VLE
Sbjct: 169 IIDSIQTISTENIESSPGSIAQVRECSASILRFAKETHTPVLLIGHINKEGSIAGPKVLE 228
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
HIVD VL EG++ YR+LRS+KNRFGST ELG++EM Q GL+ VSNPS++ LS+ H
Sbjct: 229 HIVDTVLQFEGDQHYMYRILRSIKNRFGSTAELGIYEMRQDGLRQVSNPSELLLSQDH-- 286
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
E ++G+A+A ++G R FLIE QAL S R G R +M+++VL K+ G
Sbjct: 287 -EGMSGVAIASAIEGVRPFLIETQALVSSAVYGNPQRSATGFDIRRMNMLLAVLEKRVGF 345
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
KL + +FLN+ G+ + + A DLAV +AI SS ++ I + GEIGL GE+R V+R
Sbjct: 346 KLAQKDVFLNIAGGLKVNDPAIDLAVISAILSSNMDAAIEPEVCMAGEIGLSGEIRPVNR 405
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+E+R+ KLG+++ ++PK + + T ++E + + ++E +F
Sbjct: 406 IEQRIGEAEKLGFKRFLLPKYNLQGIDTQKL-KIELVPVRKVEEAFRALF 454
>gi|365961699|ref|YP_004943266.1| DNA repair protein RadA [Flavobacterium columnare ATCC 49512]
gi|365738380|gb|AEW87473.1| DNA repair protein RadA [Flavobacterium columnare ATCC 49512]
Length = 453
Score = 352 bits (902), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 190/450 (42%), Positives = 278/450 (61%), Gaps = 29/450 (6%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQR----TWLPQKPEEVQ 168
+T++ C CG +W G C +C+ T+ +VQ+ TW + P +
Sbjct: 5 KTSFFCQSCGSQFAKWQGQCTSCKEWNTLVE---------EIVQKEEKVTWKTESPTHKR 55
Query: 169 PVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMA 228
+ L V++ + R+ + E+ RVLGGGLVPGSL L+GG+PG+GKSTLLLQ++
Sbjct: 56 APKPLLVHEIDSTEEIRMNTTD---GELNRVLGGGLVPGSLTLLGGEPGIGKSTLLLQIS 112
Query: 229 AIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLS 288
L P +YVSGEES +QI RA+R+ + ++ + T ++I +++ +
Sbjct: 113 --------LKLPYKTLYVSGEESQKQIKMRAERITTKNDNCYILTETKTQNIFRQIETIE 164
Query: 289 PRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGP 348
P +IIDSIQT+ + SAG + Q+KECT+ L++FAK+TN PV+L GH+TK G IAGP
Sbjct: 165 PDVVIIDSIQTLQTDYIESSAGSISQIKECTAELIKFAKETNTPVILIGHITKDGTIAGP 224
Query: 349 RVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSE 408
++LEH+VD VL EG++ YR+LRS+KNRFGST ELG++EM GL+ VSNPS+I +S
Sbjct: 225 KILEHMVDTVLQFEGDRNHIYRILRSLKNRFGSTSELGIYEMLGSGLREVSNPSEILIS- 283
Query: 409 QHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMK 466
H D E L+G A+A M+G R +IEIQAL + T R G A R +MI++VL K
Sbjct: 284 -HKDEE-LSGTAIATTMEGMRPLMIEIQALVSTAVYGTPQRSTTGYNAKRLNMILAVLEK 341
Query: 467 QAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELR 526
+AG +L +FLN+ G+ + + A DLAV AAI SS + P+ + F GE+GL GE+R
Sbjct: 342 RAGFRLGSKDVFLNITGGITVDDPAIDLAVVAAILSSNEDIPVGKDMCFAGEVGLSGEIR 401
Query: 527 MVSRMEKRVSTVAKLGYRKCIVPKSAEKSL 556
V+R+++R+ KLG+ V K ++ SL
Sbjct: 402 PVNRIDQRIQEAEKLGFSTIFVSKYSKISL 431
>gi|379726647|ref|YP_005318832.1| DNA repair protein RadA [Melissococcus plutonius DAT561]
gi|376317550|dbj|BAL61337.1| DNA repair protein RadA [Melissococcus plutonius DAT561]
Length = 456
Score = 352 bits (902), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 199/478 (41%), Positives = 284/478 (59%), Gaps = 30/478 (6%)
Query: 109 GKANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQ 168
K ++ + C CGY ++ G C C +M ++ + +RT + ++VQ
Sbjct: 2 AKKTKSQFECQSCGYVSPKYLGRCPNCGKWNSMTEEIIQDTTD----RRTRISLTGKKVQ 57
Query: 169 PVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMA 228
P RL EV + + P E+ RVLGGG+VPGSL+LIGGDPG+GKSTLLLQ++
Sbjct: 58 PQRLTEV------IPKKEPRIKTQLAELNRVLGGGVVPGSLLLIGGDPGIGKSTLLLQVS 111
Query: 229 AIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLS 288
+A + V+YVSGEES EQI RA+R+ E +LY+ TD+ I + ++ L
Sbjct: 112 QQLAMIG-----GKVLYVSGEESAEQIKMRAERLGTINTEFYLYAETDMSSIAKSIEELM 166
Query: 289 PRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGP 348
P +IIDSIQT+ + AG + QV+E T+ LL+ AK NI + + GHVTK G IAGP
Sbjct: 167 PDYVIIDSIQTMTQPDITSVAGSVSQVRETTAELLKLAKTNNIAIFIVGHVTKEGSIAGP 226
Query: 349 RVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSE 408
R+LEH+VD VLY EG+K ++R+LR+VKNRFGST+E+G+FEM GL V+NPS++FL E
Sbjct: 227 RMLEHMVDTVLYFEGDKHHTFRILRTVKNRFGSTNEIGIFEMHDYGLTEVTNPSQMFLEE 286
Query: 409 QHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMK 466
+ +D+ G A+ ++G+R L+EIQAL T R G+ +R +I++VL K
Sbjct: 287 RLADA---TGSAIVAALEGTRPILVEIQALITPTVFGTAKRTTTGLDFNRVSLIMAVLEK 343
Query: 467 QAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELR 526
+AGL LQ +L GV + E A DLA+A +I SS+ E FIGEIGL GE+R
Sbjct: 344 RAGLLLQNQDAYLKAAGGVKINEPAIDLAIAVSIASSYKEKGTKASECFIGEIGLTGEIR 403
Query: 527 MVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGF----EQMEFIGCKNLKEVINVVF 580
V+ +E+RV KLG+ K +PK+ LG + +E +G + E I +F
Sbjct: 404 RVANVEQRVREAQKLGFTKIYLPKN------NLGGWTPPKGIEVVGVMTISETIKKIF 455
>gi|189423471|ref|YP_001950648.1| DNA repair protein RadA [Geobacter lovleyi SZ]
gi|189419730|gb|ACD94128.1| DNA repair protein RadA [Geobacter lovleyi SZ]
Length = 450
Score = 351 bits (901), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 198/474 (41%), Positives = 283/474 (59%), Gaps = 31/474 (6%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTM---KRYSAGESDEGPVVQRTWLPQKPEEVQ 168
+T + CS CG +W G C C + +M ++ SA + G + + EV
Sbjct: 3 QKTVFSCSQCGSQSPKWLGKCPDCGAWNSMVEEQQPSAAAARSGRPLSSKSVALPIGEVP 62
Query: 169 PVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMA 228
P + + G+ +LD RVLGGGLVPGSLVLIGGDPG+GKSTLLLQ
Sbjct: 63 PQAEVRLGCGIGELD--------------RVLGGGLVPGSLVLIGGDPGIGKSTLLLQA- 107
Query: 229 AIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLS 288
+H L PV+YVSGEES Q R +R+ ++ +L + + +E+IV +V+ L
Sbjct: 108 -----MHHLAADGPVLYVSGEESAAQTRLRGERLGVSGRQLLVLAENGLEEIVAQVEKLK 162
Query: 289 PRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGP 348
PRA+++DSIQTV+ + + + G + QV+E L+ AK + IP+ + GHVTK G IAGP
Sbjct: 163 PRAVVVDSIQTVWTQALESAPGSVSQVRESAGRLMLLAKGSGIPIFIVGHVTKDGAIAGP 222
Query: 349 RVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSE 408
RVLEH+VD VLY EG++ YR+LR+VKNRFGST+E+GVFEM GL V+NPS++FLSE
Sbjct: 223 RVLEHMVDTVLYFEGDRGHPYRILRAVKNRFGSTNEIGVFEMKSGGLAEVANPSELFLSE 282
Query: 409 QHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMK 466
+ D+ G V ++GSR+ L+EIQAL + T R G+ ++R ++++VL K
Sbjct: 283 RPLDA---PGSVVTASLEGSRTLLVEIQALVTPSAYGTPRRTTIGVDSNRLALLVAVLEK 339
Query: 467 QAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELR 526
+AGL L IFLNV G L E A DLA+ A+ SS L+ P+ G GE+GL GE+R
Sbjct: 340 KAGLHLGGQDIFLNVAGGARLNEPAADLAMLLAVASSHLDRPVAAGAVVFGEVGLAGEVR 399
Query: 527 MVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
V++ E R+ KLG+++CI+P +L L +E G ++EV+ +
Sbjct: 400 AVNQPEPRLGEATKLGFKQCILPAG---NLRRLSDASLELHGVATVQEVLQFLL 450
>gi|386756666|ref|YP_006229882.1| DNA repair protein RadA [Bacillus sp. JS]
gi|384929948|gb|AFI26626.1| DNA repair protein RadA [Bacillus sp. JS]
Length = 458
Score = 351 bits (901), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 198/470 (42%), Positives = 279/470 (59%), Gaps = 26/470 (5%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKR---YSAGESDEGPVVQRTWLPQKPEEVQ 168
++ ++C CGY +W G C C + TM A + QKP +
Sbjct: 4 TKSKFICQSCGYESPKWMGKCPGCGAWNTMVEEMIKKAPANRRAAFSHSVQTVQKPSPIT 63
Query: 169 PVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMA 228
+ E + QL E RVLGGG+V GSLVLIGGDPG+GKSTLLLQ++
Sbjct: 64 SIETSEEPRVKTQL-----------GEFNRVLGGGVVKGSLVLIGGDPGIGKSTLLLQVS 112
Query: 229 AIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLS 288
+ ++ + V+Y+SGEESV+Q RADR+ I L + S TD+E I +Q ++
Sbjct: 113 SQLSGSSNS-----VLYISGEESVKQTKLRADRLGINNPSLHVLSETDMEYISSAIQEMN 167
Query: 289 PRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGP 348
P +++DSIQTVY + + G + QV+ECT+ L++ AK IP+ + GHVTK G IAGP
Sbjct: 168 PAFVVVDSIQTVYQSDITSAPGSVSQVRECTAELMKIAKTKGIPIFIVGHVTKEGSIAGP 227
Query: 349 RVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSE 408
R+LEH+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM + GL V NPS+IFL E
Sbjct: 228 RLLEHMVDTVLYFEGERHHTFRILRAVKNRFGSTNEMGIFEMREEGLTEVLNPSEIFLEE 287
Query: 409 QHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVLMK 466
+ + S AG ++ M+G+R L+EIQAL S R GI +R ++++VL K
Sbjct: 288 RSAGS---AGSSITASMEGTRPILVEIQALISPTSFGNPRRMATGIDHNRVSLLMAVLEK 344
Query: 467 QAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELR 526
+ GL LQ +L V GV L E A DLA+A +I SSF + P FIGE+GL GE+R
Sbjct: 345 RVGLLLQNQDAYLKVAGGVKLDEPAIDLAIAISIASSFRDTPPNPADCFIGEVGLTGEVR 404
Query: 527 MVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVI 576
VSR+E+RV AKLG+++ I+P + + +E IG N+ E +
Sbjct: 405 RVSRIEQRVKEAAKLGFKRMIIPAANLDGWTKP--KGIEVIGVANVAEAL 452
>gi|153807356|ref|ZP_01960024.1| hypothetical protein BACCAC_01634 [Bacteroides caccae ATCC 43185]
gi|423216835|ref|ZP_17203331.1| DNA repair protein RadA [Bacteroides caccae CL03T12C61]
gi|149129718|gb|EDM20930.1| DNA repair protein RadA [Bacteroides caccae ATCC 43185]
gi|392629365|gb|EIY23372.1| DNA repair protein RadA [Bacteroides caccae CL03T12C61]
Length = 455
Score = 351 bits (901), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 193/470 (41%), Positives = 288/470 (61%), Gaps = 22/470 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T +VCS+CG +W G C +C G Y + PV +R + ++ +PV L
Sbjct: 5 KTVYVCSNCGQDSPKWVGKCPSC---GEWNTYVEEIVRKEPVNRRPVSGIETQKPKPVIL 61
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
E+ + P + NE+ RVLGGGLVPGSLVLIGG+PG+GKSTL++Q +
Sbjct: 62 SEIIADDE------PRINMHDNELNRVLGGGLVPGSLVLIGGEPGIGKSTLVMQTVLRMP 115
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+ ++YVSGEES Q+ RADR+ + + F+ T +E I ++ +P +
Sbjct: 116 E-------KKILYVSGEESARQLKLRADRLSEVSSDCFIVCETSLEQIYVHIKNTNPDLV 168
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQT+ + S G + QV+EC++++LRFAK+T+ PVLL GH+ K G IAGP+VLE
Sbjct: 169 IIDSIQTISTETIESSPGSIAQVRECSASILRFAKETHTPVLLIGHINKEGSIAGPKVLE 228
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
HIVD VL EG++ YR+LRS+KNRFGST ELG++EM Q GL+ VSNPS++ LS+ H
Sbjct: 229 HIVDTVLQFEGDQHYMYRILRSIKNRFGSTAELGIYEMRQDGLRQVSNPSELLLSQDH-- 286
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
E ++G+A+A ++G R FLIE QAL S R G R +M+++VL K+ G
Sbjct: 287 -EGMSGVAIASAIEGVRPFLIETQALVSSAVYGNPQRSATGFDIRRMNMLLAVLEKRVGF 345
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
KL + +FLN+ G+ + + A DLAV +AI SS ++ I + GEIGL GE+R V+R
Sbjct: 346 KLAQKDVFLNIAGGLKVNDPAIDLAVISAILSSNMDAAIEPEVCMAGEIGLSGEIRPVNR 405
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+E+R+ KLG+++ ++PK + + T ++E + + ++E +F
Sbjct: 406 IEQRIGEAEKLGFKRFLLPKYNLQGIDTKKL-KIELVPVRKVEEAFRALF 454
>gi|306821580|ref|ZP_07455178.1| DNA repair protein RadA [Eubacterium yurii subsp. margaretiae ATCC
43715]
gi|304550325|gb|EFM38318.1| DNA repair protein RadA [Eubacterium yurii subsp. margaretiae ATCC
43715]
Length = 503
Score = 351 bits (901), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 191/468 (40%), Positives = 286/468 (61%), Gaps = 20/468 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T + C +CGY +WWG+C C + + E + V ++ L E PVRL
Sbjct: 44 KTKYTCENCGYETSKWWGICPKCRTADSFHEEVYTEKTK-KVQKQIELMTGGENTDPVRL 102
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
EV G D+ +G+ E RVLGGG+V GSLVLIGGDPG+GKST+LLQ+
Sbjct: 103 CEVTGG----DYTRFSTGIA--EFDRVLGGGIVNGSLVLIGGDPGIGKSTILLQLT---- 152
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+++ + V+YVS EES+EQI RADR+ ++ + + T++E I K+ S +
Sbjct: 153 --NNICKSKKVLYVSAEESLEQIKLRADRIFSKDSDILIMAQTNLEVIESKLSDQSFDVV 210
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQTV G + QVK+ + L++ K NI + GHVTK G IAGPRVLE
Sbjct: 211 IIDSIQTVSTASSDSLPGSVTQVKDIANRLMKICKSRNICCFIVGHVTKDGAIAGPRVLE 270
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EGEKF+SYR++R+VKNRFGST+ELGVFEM+ GL V NPSK+ LSE ++
Sbjct: 271 HLVDTVLYFEGEKFNSYRMIRAVKNRFGSTNELGVFEMTDRGLIEVDNPSKMLLSENTNE 330
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVS--RHVNGIQASRADMIISVLMKQAGL 470
+ +G A+ ++G+R LIEIQ+L +S S S R G+ +R +M+++VL K A +
Sbjct: 331 N---SGTAIVSSVEGTRPMLIEIQSLVISTSFPSPRRTGTGVDYNRLNMLLAVLEKHAKI 387
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
+Q +++N+ G+ ++E DL V AI SS+ + P+ +A GE+GL GE+R VS
Sbjct: 388 NIQSYDVYVNLTGGIKISEPFIDLGVIIAIASSYYDTPVKKNLAICGEVGLTGEIRSVSF 447
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINV 578
++ R++ K+G+ + ++P S K + ++++ G KN+K+ + +
Sbjct: 448 VQNRINEALKMGFEEILIPSSNLKDIKL--SDKIKITGVKNIKDALKI 493
>gi|403669831|ref|ZP_10935007.1| DNA repair protein RadA [Kurthia sp. JC8E]
Length = 458
Score = 351 bits (900), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 200/474 (42%), Positives = 292/474 (61%), Gaps = 27/474 (5%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGE-SDEGPVVQRTWLPQKPEEVQPV 170
++ +VC++CGY +W G C C TM A E +GP + P+
Sbjct: 4 KKSKFVCNECGYETAKWMGRCPGCGQWNTM--VEAIEIVSKGPRGAFKHSESVAAKATPI 61
Query: 171 RLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAI 230
+E Q + R+P + E RVLGGG+VPGSL+LIGGDPG+GKSTLLLQ++A+
Sbjct: 62 ISIET-----QEEHRVPTELV---EFNRVLGGGIVPGSLILIGGDPGIGKSTLLLQVSAL 113
Query: 231 IADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPR 290
+++ + V+YVSGEES+ Q RA+R+ + +EEL++Y+ T++E I E ++ SP+
Sbjct: 114 LSN-----KGQRVLYVSGEESIRQTKLRAERLGVKSEELYIYAETNLEMISETIEQTSPK 168
Query: 291 ALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRV 350
+IIDSIQTV+ V + G + QV+ECT L+R AK NI + L GHVTK G IAGPR+
Sbjct: 169 FVIIDSIQTVHHPEVTSAPGSVTQVRECTGELMRIAKTKNIAIFLVGHVTKEGQIAGPRI 228
Query: 351 LEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQH 410
LEH+VD VLY EGE+ ++R+LRS KNRFGST+E+ +FEM GL+ V NPS++FL E+
Sbjct: 229 LEHMVDTVLYFEGERHHNHRILRSQKNRFGSTNEIAIFEMVHGGLKEVLNPSEMFLEER- 287
Query: 411 SDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVS---RHVNGIQASRADMIISVLMKQ 467
S+ G + M+G+R L+EIQAL VS S+ + R G+ +R ++++VL K+
Sbjct: 288 --SQGAPGSTIVASMEGTRPILVEIQAL-VSPSSFNYPKRMATGLDQNRVSLLMAVLEKR 344
Query: 468 AGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRM 527
G LQ ++ V GV L E A DLAV I SSF + F GE+GL GE+R
Sbjct: 345 MGFMLQSQDAYIKVAGGVKLDEPAIDLAVLVCIVSSFKDLSANPTDCFAGEVGLTGEVRR 404
Query: 528 VSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGF-EQMEFIGCKNLKEVINVVF 580
V+R+E+RV+ +KLG+++ +PKS ++ F E +E IG + + + + F
Sbjct: 405 VTRIEQRVNEASKLGFKRIFIPKS---NIGGWDFPEGIEVIGIETVNQALKQAF 455
>gi|333378759|ref|ZP_08470486.1| DNA repair protein RadA [Dysgonomonas mossii DSM 22836]
gi|332885571|gb|EGK05817.1| DNA repair protein RadA [Dysgonomonas mossii DSM 22836]
Length = 454
Score = 351 bits (900), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 193/455 (42%), Positives = 279/455 (61%), Gaps = 35/455 (7%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRAC-------ESVGTMKRYSAGESDEGPVVQRTWLPQKPE 165
+T +VC++CG +W G C C E + T + S G S+ +
Sbjct: 5 KTVYVCNNCGNDSPKWLGKCPVCGEWNTYVEEIVTKESSSRGNSN----------LFETS 54
Query: 166 EVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLL 225
+ +P+ L EV G + P L E+ RVLGGGLVPGSLVLIGG+PG+GKSTL+L
Sbjct: 55 KAKPLLLKEVETGEE------PRIDLHDGELNRVLGGGLVPGSLVLIGGEPGIGKSTLVL 108
Query: 226 QMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQ 285
Q + + L YVSGEES Q+ RADR+ +E F+ T++E I +Q
Sbjct: 109 QTVLGLRKIKTL-------YVSGEESARQLKLRADRINSNSENCFIVCETNLEQIFVHIQ 161
Query: 286 PLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDI 345
L P +IIDSIQT++ V S G + QV+EC++++L+FAK+T PV+L GH+ K G I
Sbjct: 162 NLKPDFVIIDSIQTIFTETVESSPGSVSQVRECSASILKFAKETGTPVVLIGHINKEGSI 221
Query: 346 AGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIF 405
AGP+VLEHIVD VL EG++ YR+LRS+KNRFGST ELG++EM Q GL+ VSNPS++
Sbjct: 222 AGPKVLEHIVDTVLQFEGDQHYMYRILRSIKNRFGSTAELGIYEMRQNGLREVSNPSELL 281
Query: 406 LSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISV 463
L++ H E L+G+++A ++G R FLIE QAL + + T R G R +M+++V
Sbjct: 282 LTQNH---EGLSGVSIAAAIEGIRPFLIETQALVSTAAYGTPQRSATGFDLRRMNMLLAV 338
Query: 464 LMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGG 523
L K+AG KL + +FLN+ G+ + + A DL+V +A+ SS L+ I + GE+GL G
Sbjct: 339 LEKRAGFKLIQKDVFLNIAGGLRVNDPAMDLSVISAVLSSSLDISIEKHVCMTGEVGLSG 398
Query: 524 ELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLAT 558
E+R V+R+E+R+ KLG+ K +VP++ K +
Sbjct: 399 EIRPVNRIEQRILEAEKLGFSKILVPQNNLKGFTS 433
>gi|253577149|ref|ZP_04854469.1| DNA repair protein RadA [Paenibacillus sp. oral taxon 786 str. D14]
gi|251843393|gb|EES71421.1| DNA repair protein RadA [Paenibacillus sp. oral taxon 786 str. D14]
Length = 455
Score = 351 bits (900), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 203/477 (42%), Positives = 290/477 (60%), Gaps = 36/477 (7%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWL------PQKPEE 166
+ + CSDCGY +W+G C C + +M E E PV + +KPE
Sbjct: 5 KHKFFCSDCGYESPKWYGKCPGCGAWNSMV-----EEVEKPVKTQGMTSGIFHAKEKPES 59
Query: 167 VQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQ 226
+ + + G + RI +G+ E+ RVLGGG+VPGSLVL+GGDPG+GKSTLLLQ
Sbjct: 60 I-----INIESGKEP---RIQ-TGI--GELNRVLGGGVVPGSLVLVGGDPGIGKSTLLLQ 108
Query: 227 MAAIIADVHDLGEPS-PVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQ 285
+ H++ V+Y+SGEESV Q RA+R+ + ELF+ + ++ I E ++
Sbjct: 109 TS------HEMARSGLRVLYISGEESVRQTKLRAERLGTLSAELFVLCESSMDGIEEAIE 162
Query: 286 PLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDI 345
+ P L+IDSIQTVYL V + G + QV+ECT+ +R AK I +L GHVTK G I
Sbjct: 163 QVKPNFLVIDSIQTVYLPEVTSAPGSVSQVRECTARFMRIAKGQGIATVLVGHVTKEGAI 222
Query: 346 AGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIF 405
AGPR+LEH+VD VLY EGE+ SYRLLR+VKNRFGST+E+G+FEM++ GL V+NPS++F
Sbjct: 223 AGPRLLEHMVDCVLYFEGERHHSYRLLRAVKNRFGSTNEIGIFEMNESGLAEVANPSELF 282
Query: 406 LSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVS--RHVNGIQASRADMIISV 463
LSE+ +AG V M+G+R L+E+QAL + S R G+ R ++II+V
Sbjct: 283 LSERPLG---VAGSTVVASMEGTRPMLVELQALISATHFPSPRRMATGVDYQRMNLIIAV 339
Query: 464 LMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGG 523
L K+ G+ LQ ++N+ GV L E A DLA+A ++ SSF + P F GE+GL G
Sbjct: 340 LEKRMGMFLQNQDAYVNLAGGVKLDEPAVDLAIAVSVASSFRDIPTKPYDVFFGEVGLTG 399
Query: 524 ELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
E+R VSR E+RV AKLG+++ I+P+ + K G + ++ IG + + + V
Sbjct: 400 EVRAVSRAEQRVKEAAKLGFKRVILPEKSMKGWK--GPQGIQLIGVNTVADALAVAL 454
>gi|333922412|ref|YP_004495992.1| DNA repair protein RadA [Desulfotomaculum carboxydivorans CO-1-SRB]
gi|333747973|gb|AEF93080.1| DNA repair protein RadA [Desulfotomaculum carboxydivorans CO-1-SRB]
Length = 450
Score = 350 bits (899), Expect = 8e-94, Method: Compositional matrix adjust.
Identities = 202/476 (42%), Positives = 287/476 (60%), Gaps = 43/476 (9%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRAC--------ESVGTMKRYSAGESDEGPVVQRTWLPQK 163
+T + C CG+ +W G C C E + S G S GPV L
Sbjct: 3 KKTIYTCQQCGHKTARWMGRCPGCGEWNCLVEEKPAPRGQISPGISGSGPVPVTDVLTID 62
Query: 164 PEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTL 223
E G+ +LD RVLGGG+VPGSLVL+GGDPG+GKSTL
Sbjct: 63 EERY--------TTGLGELD--------------RVLGGGVVPGSLVLVGGDPGIGKSTL 100
Query: 224 LLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEK 283
LLQ A IA + V+YVSGEES QI RA R+ L L + TD+ +
Sbjct: 101 LLQAAFSIA-----AQVGVVLYVSGEESARQIKMRARRLQALHPNLLLMAETDMSVVERC 155
Query: 284 VQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSG 343
+Q ++P A+I+DSIQTV+ V S G + QV+ECT L++ AK T+IP+ + GHVTK G
Sbjct: 156 IQEINPVAVILDSIQTVFHPDVTSSPGSVAQVRECTGILMKVAKSTSIPIFVVGHVTKEG 215
Query: 344 DIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSK 403
+AGPRVLEH+VD VLY EGE+ S+R+LR+VKNRFGS+ ELG+FEM GL VSNPS
Sbjct: 216 TLAGPRVLEHMVDTVLYFEGERHQSFRILRAVKNRFGSSHELGIFEMGNSGLAEVSNPSA 275
Query: 404 IFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQAL-CVSGSTVSRHV-NGIQASRADMII 461
+F++++ + +AG A+ ++G+R L+EIQAL C +G + R + +G+ +R +I+
Sbjct: 276 LFMAQRPAA---VAGSAIVPSLEGTRPLLVEIQALVCPTGFGMPRRMTSGVDYNRVALIM 332
Query: 462 SVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGL 521
+VL ++ GLKL + +++ V GV L E A DLA+A A+ SSF E P+ +G+ +GE+GL
Sbjct: 333 AVLERRVGLKLANHDAYVSAVGGVKLDEPAVDLAIALAVASSFKEKPLASGLVVLGEVGL 392
Query: 522 GGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVIN 577
GE+R VS M+KR+ AKLG+ +CI P+ ++S LG +++ G ++L E +
Sbjct: 393 TGEIRAVSGMDKRLQEAAKLGFTRCIGPQREQQS-TLLGI--IDYTGIQSLAEALE 445
>gi|430748576|ref|YP_007211484.1| DNA repair protein RadA [Thermobacillus composti KWC4]
gi|430732541|gb|AGA56486.1| DNA repair protein RadA [Thermobacillus composti KWC4]
Length = 454
Score = 350 bits (899), Expect = 8e-94, Method: Compositional matrix adjust.
Identities = 206/474 (43%), Positives = 291/474 (61%), Gaps = 31/474 (6%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTM--KRYSAGESDEGPVVQRTWLPQKPEEVQPV 170
+T +VC++CG +W G C C +M +R +A ++ R + Q+ +P
Sbjct: 5 KTKFVCTECGTESPKWMGKCPGCGEWNSMVEERETAHKAQ---AASRAFQTQE----KPK 57
Query: 171 RLLEVNKGMK-QLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAA 229
++ + G + +++ R+ E+ RVLGGG+VPGSL+L+GGDPG+GKSTLLLQ +
Sbjct: 58 AIIHIEGGSEPRIETRM-------RELNRVLGGGVVPGSLILVGGDPGIGKSTLLLQTS- 109
Query: 230 IIADVHDLGEPS-PVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLS 288
H+L V+YVSGEESV Q RADR+ E LF+ T++E I E ++ +
Sbjct: 110 -----HELASAGRTVLYVSGEESVRQTKMRADRLGALHERLFVLCETNVEAIGEAIEQVQ 164
Query: 289 PRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGP 348
P L+IDSIQTVY V + G + QV+ECT+ +R AK I +L GHVTK G IAGP
Sbjct: 165 PDFLVIDSIQTVYEPSVPSAPGSVAQVRECTAWFMRAAKIRGIATVLVGHVTKEGAIAGP 224
Query: 349 RVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSE 408
R+LEH+VD VLY EGE+ SYRLLR+VKNRFGST+E+G+FEMS+ GL+ V+NPS++FLSE
Sbjct: 225 RLLEHMVDCVLYFEGERHHSYRLLRAVKNRFGSTNEIGIFEMSEAGLREVANPSELFLSE 284
Query: 409 QHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVS--RHVNGIQASRADMIISVLMK 466
+ ++G VA M+G+R L+E+QAL S R GI R +II+VL K
Sbjct: 285 RPLG---VSGSTVAASMEGTRPVLVELQALVAPTMFPSPRRMSAGIDHQRMALIIAVLEK 341
Query: 467 QAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELR 526
+ GL LQ +LNV GV L E A DLA A ++ SSF + P GE+GL GE+R
Sbjct: 342 RIGLFLQNQDAYLNVAGGVRLDEPAVDLAAAVSLASSFRDAPARPYDVIFGEVGLTGEVR 401
Query: 527 MVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
VSR E+RV AKLG+++ I+P+ + + E +E IG +++E ++V
Sbjct: 402 AVSRAEQRVKEAAKLGFKRVIMPERSMRGWKPP--EGIEIIGVGSVEEALSVAL 453
>gi|410461715|ref|ZP_11315361.1| DNA repair protein RadA [Bacillus azotoformans LMG 9581]
gi|409925482|gb|EKN62693.1| DNA repair protein RadA [Bacillus azotoformans LMG 9581]
Length = 460
Score = 350 bits (899), Expect = 8e-94, Method: Compositional matrix adjust.
Identities = 202/452 (44%), Positives = 272/452 (60%), Gaps = 38/452 (8%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTM----------KRYSAGESDEGPVVQRTWLP 161
+T + C CGY +W G C C TM +R S S E + T P
Sbjct: 4 KKTKFCCQVCGYETPKWMGKCPGCNEWNTMVEEIELPKSSRRQSFVTSSE--TIAGTNKP 61
Query: 162 QKPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKS 221
Q +Q V + K++D RVLGGG+VPGSLVLIGGDPG+GKS
Sbjct: 62 QMITTIQSVSEPRIYTEYKEMD--------------RVLGGGIVPGSLVLIGGDPGIGKS 107
Query: 222 TLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIV 281
TLLLQ+++ +A+ + V+Y+SGEES Q RADR+ I ++ LF+ S TD+ I
Sbjct: 108 TLLLQISSQLANRNH-----KVLYISGEESPRQTKLRADRLRIESDNLFVLSETDLAYIE 162
Query: 282 EKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTK 341
+ + ++P ++IDSIQTVY V + G + QV+ECTS +R AK I + L GHVTK
Sbjct: 163 KAIDEMNPSFVVIDSIQTVYHPEVQSAPGSVSQVRECTSHFMRIAKTKGIAIFLVGHVTK 222
Query: 342 SGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNP 401
G IAGPR+LEH+VDAVLY EGE+ +YR+LR+VKNRFGST+E+G+FEM + GL+ V NP
Sbjct: 223 EGSIAGPRLLEHMVDAVLYFEGERHHTYRILRAVKNRFGSTNEMGIFEMKEEGLREVLNP 282
Query: 402 SKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADM 459
S+IFL E+ SE AG V M+G+R L+EIQAL S R GI +R +
Sbjct: 283 SEIFLEER---SEGAAGSIVVASMEGTRPVLVEIQALIAPTSFGNPRRMATGIDHNRVSL 339
Query: 460 IISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPI-PNGIAFIGE 518
I++VL K+ G L +L V G+ L E A DL VA +I SSF + P P + F GE
Sbjct: 340 IMAVLEKRVGFLLGAYDAYLKVAGGIKLDEPAIDLGVAVSIASSFRDQPSNPTDVVF-GE 398
Query: 519 IGLGGELRMVSRMEKRVSTVAKLGYRKCIVPK 550
+GL GE+R VSR+E+RV AKLG+++ I+P+
Sbjct: 399 VGLTGEIRRVSRVEQRVQEAAKLGFKRVIIPE 430
>gi|418975877|ref|ZP_13523774.1| DNA repair protein RadA [Streptococcus oralis SK1074]
gi|383347026|gb|EID25032.1| DNA repair protein RadA [Streptococcus oralis SK1074]
Length = 466
Score = 350 bits (899), Expect = 9e-94, Method: Compositional matrix adjust.
Identities = 192/470 (40%), Positives = 285/470 (60%), Gaps = 24/470 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
++ ++C +C Y ++ G C C + + + V T KP ++ V
Sbjct: 18 KSTFICQNCAYNSPKYLGRCPNCGAWSSFVEEVEVAEVKNARVSLTGEKTKPMKLAEVTS 77
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
+ VN+ +++ E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ ++
Sbjct: 78 INVNRTKTEME-----------EFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLS 126
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
V V+YVSGEES +QI RA+R+ E +LY+ T+++ + +V+ + P L
Sbjct: 127 QV------GTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSVRAEVERIQPDFL 180
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQT+ ++G G + QV+E T+ L++ AK NI + + GHVTK G +AGPR+LE
Sbjct: 181 IIDSIQTIMSPEISGVQGSVSQVREVTAELMQLAKTNNIAIFIVGHVTKEGTLAGPRMLE 240
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS++FL E+
Sbjct: 241 HMVDTVLYFEGERHHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDG 300
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
+ G ++ V M+G+R L E+QAL R G+ +RA +I++VL K+AGL
Sbjct: 301 A---TGSSIVVTMEGTRPILAEVQALVTPTMFGNAKRTTTGLDFNRASLIMAVLEKRAGL 357
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ +L GV L E A DLAVA AI SS+ + P F+GE+GL GE+R V+R
Sbjct: 358 LLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKPTNPQECFVGELGLTGEIRRVNR 417
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+E+R++ AKLG+ K VPK++ + +++E IG ++EV+ VF
Sbjct: 418 IEQRINEAAKLGFTKIYVPKNSLTGITPP--KEIEVIGVTTIQEVLKKVF 465
>gi|423227514|ref|ZP_17213962.1| DNA repair protein RadA [Bacteroides cellulosilyticus CL02T12C19]
gi|392623069|gb|EIY17177.1| DNA repair protein RadA [Bacteroides cellulosilyticus CL02T12C19]
Length = 455
Score = 350 bits (899), Expect = 9e-94, Method: Compositional matrix adjust.
Identities = 196/476 (41%), Positives = 288/476 (60%), Gaps = 34/476 (7%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKP------EE 166
+T +VCS+CG +W G C +C G Y V+++ + ++P E+
Sbjct: 5 KTVYVCSNCGQESPKWVGKCPSC---GEWNTYVE------EVIRKEVVNKRPVSGIETEK 55
Query: 167 VQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQ 226
+P+ L E+ + P L E+ RVLGGGLVPGSLVLIGG+PG+GKSTL+LQ
Sbjct: 56 PKPIVLSEIEADDE------PRIDLHDEELNRVLGGGLVPGSLVLIGGEPGIGKSTLVLQ 109
Query: 227 MAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQP 286
I + V+YVSGEES Q+ RADR+ + + + T +E I ++
Sbjct: 110 TVLHIPEKR-------VLYVSGEESARQLKLRADRLSQNSTDCLIVCETSLEQIFVHIKN 162
Query: 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIA 346
P +IIDSIQT+ + S G + QV+EC++++LRFAK+T+ PVLL GH+ K G IA
Sbjct: 163 TRPELVIIDSIQTISTESIESSPGSIAQVRECSASILRFAKETHTPVLLIGHINKEGSIA 222
Query: 347 GPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFL 406
GP+VLEHIVD VL EG++ YR+LRS+KNRFGST ELG++EM Q GL+ VSNPS++ L
Sbjct: 223 GPKVLEHIVDTVLQFEGDQHYMYRILRSIKNRFGSTAELGIYEMRQDGLRQVSNPSELLL 282
Query: 407 SEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVL 464
S+ H E ++G+A+A ++G R FLIE QAL S R G R +M+++VL
Sbjct: 283 SQDH---EGMSGIAIASAIEGIRPFLIETQALVSSAVYGNPQRSATGFDLRRMNMLLAVL 339
Query: 465 MKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGE 524
K+ G KL + +FLN+ G+ + + A DLAV +AI SS ++ I + GEIGL GE
Sbjct: 340 EKRVGFKLAQKDVFLNIAGGLKVNDPAIDLAVISAILSSNMDTAIEQEVCMAGEIGLSGE 399
Query: 525 LRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+R V+R+E+R+ KLG+++ ++PK + + T ++E I + ++E V+F
Sbjct: 400 IRPVNRIEQRIGEAEKLGFKRFVLPKYNLQGIDTKKI-KIELIPVRKVEEAFRVLF 454
>gi|375310835|ref|ZP_09776100.1| DNA repair protein rada [Paenibacillus sp. Aloe-11]
gi|390456409|ref|ZP_10241937.1| DNA repair protein RadA [Paenibacillus peoriae KCTC 3763]
gi|375077203|gb|EHS55446.1| DNA repair protein rada [Paenibacillus sp. Aloe-11]
Length = 457
Score = 350 bits (899), Expect = 9e-94, Method: Compositional matrix adjust.
Identities = 205/446 (45%), Positives = 281/446 (63%), Gaps = 21/446 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T + C++CGY +W+G C C++ +M + ES + L + +P+ +
Sbjct: 5 KTKFSCTECGYESPKWYGKCPGCQAWNSMVEET--ESIVKTQGMGSSLLTHSTKDKPLPI 62
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
+EV G + RI L+G+ E+ RVLGGG+VPGSLVL+GGDPG+GKSTL+LQ + +A
Sbjct: 63 IEVESGK---EARI-LTGI--GELNRVLGGGVVPGSLVLVGGDPGIGKSTLMLQTSNELA 116
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
V+YVSGEESV Q RADR+ + L++ T++E I E V L P L
Sbjct: 117 LTG-----LKVLYVSGEESVRQTKLRADRLGALSPNLYVLCETNLETIEEAVDSLKPEFL 171
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
+IDSIQTVYL V + G + QV+ECTS +R AK I +L GHVTK G IAGPR+LE
Sbjct: 172 VIDSIQTVYLPEVTSAPGSVAQVRECTSRFMRIAKGLGIATVLVGHVTKEGAIAGPRLLE 231
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EGE+ +YRLLR+VKNRFGST+E+G+FEM++ GL+ V+NPS++FLSE+
Sbjct: 232 HMVDCVLYFEGERHHTYRLLRAVKNRFGSTNEIGIFEMAESGLREVANPSELFLSERPLG 291
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVS--RHVNGIQASRADMIISVLMKQAGL 470
+AG V ++G+R L+E+QAL + S R GI R +II+VL K+ G+
Sbjct: 292 ---VAGSTVVASVEGTRPVLVELQALIAATHFPSPRRMGTGIDHHRMGLIIAVLEKRMGM 348
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ +LNV GV L E A DLA+A +I SSF + P GE+GL GE+R VSR
Sbjct: 349 FLQNQDAYLNVAGGVKLDEPAVDLAIAVSIASSFRDAPTKPYDVIFGEVGLTGEVRAVSR 408
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSL 556
E+RV KLG+++ I+P EKSL
Sbjct: 409 AEQRVREAEKLGFKRVIMP---EKSL 431
>gi|345882713|ref|ZP_08834169.1| DNA repair protein RadA [Prevotella sp. C561]
gi|345044422|gb|EGW48461.1| DNA repair protein RadA [Prevotella sp. C561]
Length = 466
Score = 350 bits (899), Expect = 9e-94, Method: Compositional matrix adjust.
Identities = 198/481 (41%), Positives = 287/481 (59%), Gaps = 31/481 (6%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMK--RYSAGESDEGPVVQRTWLPQKPE---- 165
++ +VCS CG +W G C C T K R +A + T L +
Sbjct: 4 DKIAYVCSSCGQESAKWIGKCPNCGQWNTFKEIRIAADTGSQAARNAATTLRKAASGGAT 63
Query: 166 ---EVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKST 222
+P RL +V+ D RI + NE+ RVLGGGLVPGS+VL+GG+PG+GKST
Sbjct: 64 SALTNKPQRLRDVSS---HDDPRIDM---HDNELNRVLGGGLVPGSIVLLGGEPGIGKST 117
Query: 223 LLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRM-MIATEELFLYSSTDIEDIV 281
L LQ L V+YVSGEES QI RA+R+ E + + S T +E I
Sbjct: 118 LTLQTI--------LHLTQRVLYVSGEESPHQIKMRAERISKDIAENIIILSETSLEHIF 169
Query: 282 EKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTK 341
E ++ + P +++DSIQT+ V S G + QV+EC SALLRFAK + +PV+L GH+ K
Sbjct: 170 EHIRDVQPELVVVDSIQTISTEDVDSSPGSVTQVRECASALLRFAKTSGVPVILIGHINK 229
Query: 342 SGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNP 401
G IAGP++LEHIVD V+ EG++ YR+LRS+KNRFGST ELG++EM Q GL+ VSNP
Sbjct: 230 EGSIAGPKILEHIVDTVIQFEGDQHYMYRILRSIKNRFGSTSELGIYEMEQQGLREVSNP 289
Query: 402 SKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADM 459
S++ L+E H E L+G+A++ ++G+R FL+E QAL S + T R G R +M
Sbjct: 290 SELLLTEDH---EGLSGVAISSTIEGARPFLVETQALVSSAAYGTPQRSATGFDQRRLNM 346
Query: 460 IISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEI 519
+++VL K+ G KL + +FLN+ G+ +T+ A DL+V AA+ SS ++ PI G GE+
Sbjct: 347 LLAVLEKRVGFKLMQKDVFLNIAGGLRVTDMAMDLSVIAAVLSSNVDTPIEQGWCMCGEV 406
Query: 520 GLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVV 579
GL GE+R +SR+E+R++ KLG+ I+PK L G +++ + ++E + +
Sbjct: 407 GLSGEVRPISRIEQRIAEAEKLGFSHIIIPKYNLSGLT--GKYKIQLHPVRKVEEALRAL 464
Query: 580 F 580
F
Sbjct: 465 F 465
>gi|452994669|emb|CCQ93785.1| DNA repair protein; 6-O-methylguanine-DNA methyltransferase
[Clostridium ultunense Esp]
Length = 452
Score = 350 bits (899), Expect = 9e-94, Method: Compositional matrix adjust.
Identities = 196/471 (41%), Positives = 279/471 (59%), Gaps = 26/471 (5%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVR 171
++ +VC CGY +W G C C TM + ++ + R P EV+
Sbjct: 4 TKSKFVCQQCGYESAKWMGRCPGCSEWNTMVEEREEKEEKRWLSHRMEKPIPFNEVKGET 63
Query: 172 LLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAII 231
+ G ++LD RVLGGG+VPGS L+GGDPG+GKSTLLLQ
Sbjct: 64 APRIQIGFRELD--------------RVLGGGIVPGSFTLVGGDPGIGKSTLLLQATHQF 109
Query: 232 ADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRA 291
A E V+YVSGEES QI R +R+ I E LFL + T++E I+E+ + L P
Sbjct: 110 AR-----EGRKVLYVSGEESPAQIRLRGERLGIKNENLFLMAETNVETIIEEAKKLKPTL 164
Query: 292 LIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVL 351
+IIDSIQT++L ++ + G + QV+E +ALLRF K+ I +L GHVTK G+IAGPR+L
Sbjct: 165 VIIDSIQTMFLPEISSAPGSVSQVRETAAALLRFTKREEIATILVGHVTKQGEIAGPRIL 224
Query: 352 EHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHS 411
EH+VD VLY EGE +YR+LR+VKNRFG T E+GVFEM + GL V NPS++FLSE+
Sbjct: 225 EHMVDTVLYFEGEAHHTYRILRTVKNRFGPTHEMGVFEMKEKGLVEVQNPSELFLSER-- 282
Query: 412 DSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAG 469
S AG ++ M+G+R L+EIQAL T R G+ +R MI++VL K+AG
Sbjct: 283 -SLAAAGASITATMEGTRPILVEIQALLSPTLFPTPRRVATGLDYNRVAMILAVLEKRAG 341
Query: 470 LKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVS 529
+ L ++NVV G+ L + A DLA+A ++ SS+ + PIP IGE+GL GE+R V
Sbjct: 342 ILLGSQDAYVNVVGGMRLNDPAADLAIALSLVSSYRDRPIPYHDLLIGEVGLTGEIRGVP 401
Query: 530 RMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
R+E+R+ ++G ++ I+P+ + + G +M+ + L E I+ V
Sbjct: 402 RVEQRIQEAYQMGIKRVILPRINLQGIEFPG--EMKVSAVETLTEAIDEVL 450
>gi|410101021|ref|ZP_11295975.1| DNA repair protein RadA [Parabacteroides goldsteinii CL02T12C30]
gi|409213667|gb|EKN06683.1| DNA repair protein RadA [Parabacteroides goldsteinii CL02T12C30]
Length = 457
Score = 350 bits (898), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 199/450 (44%), Positives = 280/450 (62%), Gaps = 23/450 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPE--EVQPV 170
+T +VCS+CG +W G C C T + P +R +P E +V+PV
Sbjct: 5 KTVYVCSNCGADSPKWVGKCPNCGEWNTYVEEIVATKE--PSAKRI-IPGITETGKVRPV 61
Query: 171 RLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAI 230
L ++ + + RI L E+ RVLGGGLV GSLVLIGG+PG+GKSTL+LQ
Sbjct: 62 LLRDITS---EEESRIDLKD---GELNRVLGGGLVKGSLVLIGGEPGIGKSTLVLQTVLG 115
Query: 231 IADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPR 290
+ ++ L YVSGEES Q+ RADR+ E F+ S T++E I + + + P
Sbjct: 116 LNNLKTL-------YVSGEESSRQLKLRADRIAHENPECFILSETNLEQIFVQARNVQPD 168
Query: 291 ALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRV 350
LIIDSIQT+Y V S G + QV+EC++A+L++AK++ +PVLL GH+ K G IAGP+V
Sbjct: 169 LLIIDSIQTIYTELVESSPGSVSQVRECSAAILKYAKESGVPVLLIGHINKEGSIAGPKV 228
Query: 351 LEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQH 410
LEHIVD VL EG++ YR+LRS+KNRFGST ELG++EM Q GL+ VSNPS++ L++ H
Sbjct: 229 LEHIVDTVLQFEGDQHYMYRILRSIKNRFGSTAELGIYEMRQDGLREVSNPSELLLTQNH 288
Query: 411 SDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQA 468
E L+G+A+A ++G R FLIE QAL S T R G R +M+++VL K+A
Sbjct: 289 ---EGLSGVAIAAAIEGIRPFLIETQALVSSAVYGTPQRSATGFDLRRMNMLLAVLEKRA 345
Query: 469 GLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMV 528
G KL + +FLN+ G+ + + A DLAV +AI SS L+ I G+ GE+GL GE+R V
Sbjct: 346 GFKLIQKDVFLNIAGGLKVNDPAIDLAVISAILSSSLDISIEQGVCMCGEVGLSGEIRPV 405
Query: 529 SRMEKRVSTVAKLGYRKCIVPKSAEKSLAT 558
+R+E+R+ KLG+ + I+P + K T
Sbjct: 406 NRIEQRILEAEKLGFSRIIIPHNNLKGFDT 435
>gi|366087761|ref|ZP_09454246.1| DNA repair protein RadA [Lactobacillus zeae KCTC 3804]
Length = 454
Score = 350 bits (898), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 196/470 (41%), Positives = 284/470 (60%), Gaps = 23/470 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T +VC +CGY + G C C T+ + + P R +V+P+R+
Sbjct: 5 KTQYVCQNCGYISATYLGRCPNCGGWNTLVEETVSSTKSAPRQTRAG-----SKVKPMRM 59
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
EV K+ + L+ E+ RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ +A
Sbjct: 60 DEVTVA-KETRVKTGLA-----ELNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSGQLA 113
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
V+YVSGEES QI RA R+ +A ++LY TD+ I + + P +
Sbjct: 114 STG-----GTVLYVSGEESASQIKMRAGRLGVANSGMYLYPETDMPSIEGVIDQMQPDYV 168
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
+IDS+QT+ + + + G + Q++E T+ L+R AK + + + GHVTK G IAGP++LE
Sbjct: 169 VIDSVQTMNVPDMNSAVGSVAQIREVTAELMRIAKSKGVTIFIVGHVTKEGAIAGPKILE 228
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EG+ +YR+LRSVKNRFGST+E+G+FEM Q GLQ V+NPS+IFL E+ +
Sbjct: 229 HMVDTVLYFEGDMHHTYRILRSVKNRFGSTNEIGIFEMHQNGLQEVANPSEIFLEERLAG 288
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVLMKQAGL 470
+ G AV V M+G+R L+EIQAL R +G+ +R +I++VL K+A L
Sbjct: 289 A---TGSAVVVSMEGTRPILVEIQALISPTMYGNAKRTSSGLDHNRVSLIMAVLEKRANL 345
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ +L GV L E A DLA+A AI SS+ + IP F+GEIGL GE+R V+R
Sbjct: 346 MLQNQDAYLKATGGVKLDEPAIDLAMAVAIASSYRDKEIPPTDCFVGEIGLTGEVRRVNR 405
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+E RV AKLG+++ VP++ + + ++ IG ++ E ++ VF
Sbjct: 406 IEDRVKEAAKLGFKRIFVPRNNLQGWHAP--KDIQVIGVTSIAEALHKVF 453
>gi|315640334|ref|ZP_07895451.1| DNA repair protein RadA [Enterococcus italicus DSM 15952]
gi|315483996|gb|EFU74475.1| DNA repair protein RadA [Enterococcus italicus DSM 15952]
Length = 456
Score = 350 bits (898), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 198/475 (41%), Positives = 286/475 (60%), Gaps = 22/475 (4%)
Query: 109 GKANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQ 168
K +T + C CGY ++ G C C S +M ++ + +R ++++
Sbjct: 2 AKKAKTQFECQHCGYISPRYLGKCPQCHSWNSMVEEKVQDTSD----RRARTTITGQKMK 57
Query: 169 PVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMA 228
P RL +V + + P E+ RVLGGG+VPGSL+L+GGDPG+GKSTLLLQ++
Sbjct: 58 PTRLADV------VPKKEPRVQTDLAELNRVLGGGVVPGSLILLGGDPGIGKSTLLLQVS 111
Query: 229 AIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLS 288
+A V+YVSGEES EQI RA R+ + +E +LY+ TD+ DI + ++ L+
Sbjct: 112 QQLAATG-----GTVLYVSGEESAEQIKLRAQRLGVINDEFYLYAETDMSDIRKAIEDLA 166
Query: 289 PRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGP 348
P+ +IIDSIQT+ + AG + QV+E T+ LL+ AK I + + GHVTK G IAGP
Sbjct: 167 PQYVIIDSIQTMTQPDITSVAGSVSQVRETTAELLKIAKTNGIAIFIVGHVTKEGSIAGP 226
Query: 349 RVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSE 408
R+LEH+VD VLY EGE+ S+R+LR+VKNRFGST+E+G+FEM GL+ V+NPS++FL E
Sbjct: 227 RMLEHMVDTVLYFEGEQHQSFRILRAVKNRFGSTNEIGIFEMVGGGLREVANPSQVFLEE 286
Query: 409 QHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMK 466
+ + + G A+ V M+GSR L+EIQAL R G+ +R +I++VL K
Sbjct: 287 RLAGA---TGSAIVVAMEGSRPILVEIQALITPTMFGNAKRTTTGLDFNRVSLIMAVLEK 343
Query: 467 QAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELR 526
+ GL LQ +L GV L E A DLA+A +I SS+ E FIGEIGL GE+R
Sbjct: 344 RTGLLLQNQDAYLKAAGGVKLNEPAIDLAIAMSIASSYKEKGTNPTECFIGEIGLTGEIR 403
Query: 527 MVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVFT 581
V+ +E+RV V KLG++K +PK+ ++ +E +G L E + VF+
Sbjct: 404 RVNAIEQRVKEVEKLGFKKVYLPKNNLQNWEPP--TSIEIVGVATLSEALRKVFS 456
>gi|163791196|ref|ZP_02185613.1| predicted repair protein [Carnobacterium sp. AT7]
gi|159873527|gb|EDP67614.1| predicted repair protein [Carnobacterium sp. AT7]
Length = 456
Score = 350 bits (898), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 205/478 (42%), Positives = 288/478 (60%), Gaps = 30/478 (6%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYS-AGESDEGPVVQRTWLPQKPEEVQ 168
K T +VC CGY +W G C C S M+ + A ++D V T K E +Q
Sbjct: 3 KKKATKFVCQACGYESPKWMGRCPNCGSWNQMEEETMADKNDRRSRVSMTGKAAKAEAIQ 62
Query: 169 PVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMA 228
+ + +V + QL E+ RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++
Sbjct: 63 DINVSKVPRIKTQL-----------KELNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVS 111
Query: 229 AIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLS 288
A ++ G V+YVSGEES QI RA R+ + + ++Y TD+ I + ++ L
Sbjct: 112 A---QLNLAG--GKVLYVSGEESASQIKMRAIRLGVKGSDFYIYPETDMGAIRQTIEDLK 166
Query: 289 PRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGP 348
P +IIDSIQT+ + G+ G + QV+E T+ LL+ AK NI + + GHVTK G IAGP
Sbjct: 167 PDYVIIDSIQTMNQPDITGAIGSVSQVRESTADLLKIAKTNNIAIFIVGHVTKEGSIAGP 226
Query: 349 RVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSE 408
R+LEH+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM + GL V NPS++FL E
Sbjct: 227 RMLEHMVDTVLYFEGERHHTFRILRAVKNRFGSTNEIGIFEMREGGLVEVLNPSEMFLEE 286
Query: 409 QHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMK 466
+ S + G AV M+GSR L EIQ+L + R +G+ +R +I++VL K
Sbjct: 287 RLSGA---TGSAVVASMEGSRPILAEIQSLITPTAFGNARRTASGLDHNRVALIMAVLEK 343
Query: 467 QAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELR 526
+AGL LQ +L GV + E A DLA+A +I SS+ E FIGE+GL GE+R
Sbjct: 344 RAGLLLQNQDAYLKSAGGVKIDEPAIDLAIAISITSSYQEKETKETDCFIGEMGLTGEIR 403
Query: 527 MVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFE---QMEFIGCKNLKEVINVVFT 581
VSR+E+RV+ AKLG+++ ++PK+ G+E +E IG + E I F+
Sbjct: 404 RVSRIEQRVNEAAKLGFKRIMIPKN-----NIGGWEFPPNVEIIGVVTIAEAIKKAFS 456
>gi|323703790|ref|ZP_08115428.1| DNA repair protein RadA [Desulfotomaculum nigrificans DSM 574]
gi|323531259|gb|EGB21160.1| DNA repair protein RadA [Desulfotomaculum nigrificans DSM 574]
Length = 450
Score = 350 bits (898), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 201/476 (42%), Positives = 287/476 (60%), Gaps = 43/476 (9%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRAC--------ESVGTMKRYSAGESDEGPVVQRTWLPQK 163
+T + C CG+ +W G C C E + S G S GPV L
Sbjct: 3 KKTIYTCQQCGHKTARWMGRCPGCGEWNCLVEEKPAPRGQISPGISGSGPVPVTDVLTID 62
Query: 164 PEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTL 223
E G+ +LD RVLGGG+VPGSLVL+GGDPG+GKSTL
Sbjct: 63 EERY--------TTGLGELD--------------RVLGGGVVPGSLVLVGGDPGIGKSTL 100
Query: 224 LLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEK 283
LLQ A IA + V+YVSGEES QI RA R+ L L + TD+ +
Sbjct: 101 LLQAAFSIA-----AQVGVVLYVSGEESARQIKMRARRLQALHPNLLLMAETDMSVVERC 155
Query: 284 VQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSG 343
+Q ++P A+I+DSIQTV+ V S G + QV+ECT L++ AK T+IP+ + GHVTK G
Sbjct: 156 IQEINPVAVILDSIQTVFHPDVTSSPGSVAQVRECTGILMKVAKSTSIPIFVVGHVTKEG 215
Query: 344 DIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSK 403
+AGPRVLEH+VD VLY EGE+ S+R+LR+VKNRFGS+ ELG+FEM GL VSNPS
Sbjct: 216 TLAGPRVLEHMVDTVLYFEGERHQSFRILRAVKNRFGSSHELGIFEMGNSGLAEVSNPSA 275
Query: 404 IFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQAL-CVSGSTVSRHV-NGIQASRADMII 461
+F++++ + +AG A+ ++G+R L+EIQAL C +G + R + +G+ +R +I+
Sbjct: 276 LFMAQRPTA---VAGSAIVPSLEGTRPLLVEIQALVCPTGFGMPRRMTSGVDYNRVALIM 332
Query: 462 SVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGL 521
+VL ++ GL+L + +++ V GV L E A DLA+A A+ SSF E P+ +G+ +GE+GL
Sbjct: 333 AVLERRVGLRLANHDAYVSAVGGVKLDEPAVDLAIALAVASSFKEKPLASGLVVLGEVGL 392
Query: 522 GGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVIN 577
GE+R VS M+KR+ AKLG+ +CI P+ ++S LG +++ G ++L E +
Sbjct: 393 TGEIRAVSGMDKRLQEAAKLGFTRCIGPQREQQS-TLLGI--IDYTGIQSLAEALE 445
>gi|414563173|ref|YP_006042134.1| DNA repair protein RadA [Streptococcus equi subsp. zooepidemicus
ATCC 35246]
gi|338846238|gb|AEJ24450.1| DNA repair protein RadA [Streptococcus equi subsp. zooepidemicus
ATCC 35246]
Length = 448
Score = 350 bits (897), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 198/467 (42%), Positives = 284/467 (60%), Gaps = 24/467 (5%)
Query: 116 WVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRLLEV 175
++C +CGY ++ G C C + + E E V+ + E+ +P++L +
Sbjct: 3 FICGECGYQSPKYLGRCPNCSAWSSFV-----EETEVKDVKNARISLTGEKSKPIKLKHI 57
Query: 176 NKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVH 235
N G++ + + NE RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ +AD
Sbjct: 58 N-GVRYQRIQTEM-----NEFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSIQLAD-- 109
Query: 236 DLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIID 295
V+YVSGEES EQI R+DR+ + +LY+ T+++ I +++ + P LIID
Sbjct: 110 ----KGTVLYVSGEESAEQIKMRSDRLGQTDNDFYLYAETNMQAIRAEIEAIQPDFLIID 165
Query: 296 SIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIV 355
SIQT+ ++G G + QV+E T+ LL+ AK +I + GHVTK G +AGPR+LEH+V
Sbjct: 166 SIQTIMSPEISGVQGSVSQVREVTAELLQLAKSNHIATFIVGHVTKEGTLAGPRMLEHMV 225
Query: 356 DAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEF 415
D VLY EGE+ ++R+LR+VKNRFGST+E+G+F+M GL V NPS++FL E+ +
Sbjct: 226 DTVLYFEGERHHTFRILRAVKNRFGSTNEIGIFDMQSGGLVEVLNPSQVFLEERLDGA-- 283
Query: 416 LAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGLKLQ 473
G AV V M+GSR L E+QAL R G+ +R +I++VL K+ GL LQ
Sbjct: 284 -TGSAVVVTMEGSRPILAEVQALVTPTVFGNARRTTTGLDFNRVSLIMAVLEKRCGLLLQ 342
Query: 474 ENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEK 533
+L GV L E A DLAVA AI SS+ E P AF+GEIGL GE+R V+R+E+
Sbjct: 343 NQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTNPQEAFLGEIGLTGEIRRVTRIEQ 402
Query: 534 RVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
R++ AKLG+ K PKS+ + + +E +G + EV+ VF
Sbjct: 403 RINEAAKLGFTKLYAPKSSLQGIDIP--SGIEVVGVMTVGEVLKAVF 447
>gi|210623125|ref|ZP_03293591.1| hypothetical protein CLOHIR_01541 [Clostridium hiranonis DSM 13275]
gi|210153802|gb|EEA84808.1| hypothetical protein CLOHIR_01541 [Clostridium hiranonis DSM 13275]
Length = 459
Score = 350 bits (897), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 190/475 (40%), Positives = 293/475 (61%), Gaps = 30/475 (6%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTM-----KRYSAGESDEGPVVQRTWLPQKPEEV 167
+T +VC CGY + +W G C C T + S E V+ ++ QKP +
Sbjct: 5 KTKYVCQSCGYENPKWLGKCPECMKWNTFVEEIEDKSSKSNHRETFVIDKS--SQKPVNI 62
Query: 168 QPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQM 227
+ + + + R SG+ NE+ RVLGGG+V GSLVL+GGDPG+GKSTLLLQ+
Sbjct: 63 NSITI--------KHEERFS-SGI--NELNRVLGGGIVRGSLVLVGGDPGIGKSTLLLQV 111
Query: 228 AAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPL 287
+ +A V+Y+SGEES QI RA+R+ +E LF+ + ++ I ++
Sbjct: 112 SESVAQ-----SGKKVLYISGEESESQIKMRAERLNAKSENLFIMAENNLNIIEHNLEGF 166
Query: 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAG 347
P +I+DSIQTV+ +A + G + Q+KE TS +R +KK I + GHVTK G +AG
Sbjct: 167 DPDLIILDSIQTVFTPDIASAPGTVSQIKEGTSRFMRISKKMGISTFVVGHVTKEGALAG 226
Query: 348 PRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLS 407
P+++EH+VD VLY EGE++++YRL+R+VKNRFGST+ELGVFEMS+ GLQ + NPSK +S
Sbjct: 227 PKIMEHMVDTVLYFEGERYNTYRLIRAVKNRFGSTNELGVFEMSEKGLQELENPSKALIS 286
Query: 408 EQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVLM 465
E+ ++ +G + ++G+R L+E+QAL S R GI +R +++++VL
Sbjct: 287 EKPENA---SGSVIVSTVEGTRPMLLELQALVSPTSFGIPRRTATGIDFNRVNLLLAVLE 343
Query: 466 KQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGEL 525
K+AG+++Q ++LN+V G+ + E + DL V A+ S F PI +A GE+GL GE+
Sbjct: 344 KRAGMQIQNQDVYLNIVGGIKINEPSMDLGVILAVASGFRNIPISGEVAVTGEVGLTGEI 403
Query: 526 RMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
R VS +EKR+S KLG++K I+PKS +++ + + +E +N+++ IN+V
Sbjct: 404 RGVSYIEKRISECRKLGFKKIIIPKSNYEAVKDV--KGIEIWPVENVRQAINMVL 456
>gi|224535192|ref|ZP_03675731.1| hypothetical protein BACCELL_00053 [Bacteroides cellulosilyticus
DSM 14838]
gi|224523195|gb|EEF92300.1| hypothetical protein BACCELL_00053 [Bacteroides cellulosilyticus
DSM 14838]
Length = 455
Score = 350 bits (897), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 196/476 (41%), Positives = 288/476 (60%), Gaps = 34/476 (7%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKP------EE 166
+T +VCS+CG +W G C +C G Y V+++ + ++P E+
Sbjct: 5 KTVYVCSNCGQESPKWVGKCPSC---GEWNTYVE------EVIRKEVVNKRPVSGIETEK 55
Query: 167 VQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQ 226
+P+ L E+ + P L E+ RVLGGGLVPGSLVLIGG+PG+GKSTL+LQ
Sbjct: 56 PKPIVLSEIEADDE------PRIDLHDEELNRVLGGGLVPGSLVLIGGEPGIGKSTLVLQ 109
Query: 227 MAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQP 286
I + V+YVSGEES Q+ RADR+ + + + T +E I ++
Sbjct: 110 TVLHIPEKR-------VLYVSGEESARQLKLRADRLSHNSTDCLIVCETSLEQIFVHIKN 162
Query: 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIA 346
P +IIDSIQT+ + S G + QV+EC++++LRFAK+T+ PVLL GH+ K G IA
Sbjct: 163 TRPELVIIDSIQTISTESIESSPGSIAQVRECSASILRFAKETHTPVLLIGHINKEGSIA 222
Query: 347 GPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFL 406
GP+VLEHIVD VL EG++ YR+LRS+KNRFGST ELG++EM Q GL+ VSNPS++ L
Sbjct: 223 GPKVLEHIVDTVLQFEGDQHYMYRILRSIKNRFGSTAELGIYEMRQDGLRQVSNPSELLL 282
Query: 407 SEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVL 464
S+ H E ++G+A+A ++G R FLIE QAL S R G R +M+++VL
Sbjct: 283 SQDH---EGMSGIAIASAIEGIRPFLIETQALVSSAVYGNPQRSATGFDIRRMNMLLAVL 339
Query: 465 MKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGE 524
K+ G KL + +FLN+ G+ + + A DLAV +AI SS ++ I + GEIGL GE
Sbjct: 340 EKRVGFKLAQKDVFLNIAGGLKVNDPAIDLAVISAILSSNMDTAIEPEVCMAGEIGLSGE 399
Query: 525 LRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+R V+R+E+R+ KLG+++ ++PK + + T ++E I + ++E V+F
Sbjct: 400 IRPVNRIEQRIGEAEKLGFKRFVLPKYNLQGIDTKKI-KIELIPVRKVEEAFRVLF 454
>gi|315649733|ref|ZP_07902817.1| DNA repair protein RadA [Paenibacillus vortex V453]
gi|315274921|gb|EFU38297.1| DNA repair protein RadA [Paenibacillus vortex V453]
Length = 455
Score = 350 bits (897), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 202/450 (44%), Positives = 281/450 (62%), Gaps = 29/450 (6%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKP---EEVQ 168
+T + C++CGY +W+G C C+S +M +E V +T P + +
Sbjct: 4 TKTKFFCTECGYEAPKWFGKCPGCQSWNSM-------VEETETVIKTQGMNSPLFHSKEK 56
Query: 169 PVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMA 228
P+ ++ + G + RI +G+ E+ RVLGGGLVPGSLVL+GGDPG+GKSTLLLQ +
Sbjct: 57 PLSIINIESGKEP---RIQ-TGI--AELNRVLGGGLVPGSLVLVGGDPGIGKSTLLLQAS 110
Query: 229 AIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLS 288
+A V+Y+SGEESV Q RADR+ + ELF+ T++E I E ++ +
Sbjct: 111 NRLAQ-----NGVRVLYISGEESVRQTKLRADRLGALSPELFVLCETNLESIEEAIESVQ 165
Query: 289 PRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGP 348
P ++IDSIQTVYL V + G + QV+ECT+ +R AK I +L GHVTK G IAGP
Sbjct: 166 PGFVVIDSIQTVYLPEVTSAPGSVSQVRECTARFMRLAKVKGIATVLVGHVTKEGAIAGP 225
Query: 349 RVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSE 408
R+LEH+VD VLY EGE+ +YRLLR+VKNRFGST+E+G+FEM + GL+ V NPS++FLSE
Sbjct: 226 RMLEHMVDCVLYFEGERHHTYRLLRAVKNRFGSTNEIGIFEMGEDGLREVGNPSELFLSE 285
Query: 409 QHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVS--RHVNGIQASRADMIISVLMK 466
+ +AG V M+G+R L+E+QAL + S R G+ R ++II+VL K
Sbjct: 286 RPLG---VAGSTVVASMEGTRPVLVELQALISTTHFPSPRRMGTGVDHHRMNLIIAVLEK 342
Query: 467 QAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELR 526
+ G+ LQ +LNV GV L E A DLA+A +I SSF + P GE+GL GE+R
Sbjct: 343 RMGMFLQTQDAYLNVAGGVKLDEPAVDLAIAVSIASSFRDIPTKPYDVIFGEVGLTGEVR 402
Query: 527 MVSRMEKRVSTVAKLGYRKCIVPKSAEKSL 556
VSR E+RV KLG+++ ++P EKSL
Sbjct: 403 AVSRAEQRVREAEKLGFKRVLMP---EKSL 429
>gi|146298590|ref|YP_001193181.1| DNA repair protein RadA [Flavobacterium johnsoniae UW101]
gi|146153008|gb|ABQ03862.1| DNA repair protein RadA [Flavobacterium johnsoniae UW101]
Length = 453
Score = 350 bits (897), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 188/470 (40%), Positives = 297/470 (63%), Gaps = 24/470 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T++ C +CG +W G C AC+ T+ + ++ V ++ + +P+++
Sbjct: 5 KTSFFCQNCGTQYSKWQGQCNACKEWNTIAEEIIQKQEK--VAWKSEPTSSSKAPRPLKI 62
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
E++ + I + G E+ RVLGGG+VPGSL L+GG+PG+GKSTLLLQ++
Sbjct: 63 TEIDSAQE-----IRMDTTDG-ELNRVLGGGIVPGSLTLLGGEPGIGKSTLLLQIS---- 112
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
L P +YVSGEES +QI RA+R+ ++ ++ + T ++I ++++ + P +
Sbjct: 113 ----LKLPYKTLYVSGEESQKQIKMRAERITPNSDNCYILTETKTQNIFKQIEAIQPEIV 168
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQT++ + +AG + Q++E T+ L++FAK+TNIPV+L GH+TK G+IAGP++LE
Sbjct: 169 IIDSIQTLHTDYIESTAGSISQIRETTAELIKFAKETNIPVILIGHITKDGNIAGPKILE 228
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VL EG++ YR+LRS+KNRFGST ELG++EM GL+ VSNPS+I +S H D
Sbjct: 229 HMVDTVLQFEGDRNHIYRILRSLKNRFGSTSELGIYEMLGSGLREVSNPSEILIS--HKD 286
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
E L+G A+A ++G R +IEIQ+L + T R G A R +MI++VL K+AG
Sbjct: 287 EE-LSGTAIATTLEGMRPLMIEIQSLVSTAVYGTPQRSTTGYNAKRLNMILAVLEKRAGF 345
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
+L +FLNV G+++ + A DLAV AAI SS + P+ G F GE+GL GE+R V+R
Sbjct: 346 RLGAKDVFLNVTGGISVDDPAIDLAVVAAILSSNEDIPVGKGFCFAGEVGLSGEIRPVNR 405
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+++R+ KLG+ V K + +L G ++E + +++V +++F
Sbjct: 406 VDQRIQEAEKLGFDTIFVSKYNKIALKNTGI-KVELVA--KIEDVASILF 452
>gi|418977349|ref|ZP_13525172.1| DNA repair protein RadA [Streptococcus mitis SK575]
gi|383350003|gb|EID27909.1| DNA repair protein RadA [Streptococcus mitis SK575]
Length = 445
Score = 350 bits (897), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 194/466 (41%), Positives = 283/466 (60%), Gaps = 24/466 (5%)
Query: 117 VCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRLLEVN 176
+C +CGY ++ G C C S + + V T KP ++ V + VN
Sbjct: 1 MCQNCGYNSPKYLGRCPNCGSWSSFVEEVEVVEVKNARVSLTGEKTKPMKLAEVTSINVN 60
Query: 177 KGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHD 236
+ +++ E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ ++ V
Sbjct: 61 RTKTEME-----------EFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSQV-- 107
Query: 237 LGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIIDS 296
V+YVSGEES +QI RA+R+ E +LY+ T+++ I +V+ + P LIIDS
Sbjct: 108 ----GTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSIRAEVERIQPDFLIIDS 163
Query: 297 IQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVD 356
IQT+ ++G G + QV+E T+ L++ AK NI + + GHVTK G +AGPR+LEH+VD
Sbjct: 164 IQTIMSPEISGVQGSVSQVREVTAELMQLAKTNNIAIFIVGHVTKEGTLAGPRMLEHMVD 223
Query: 357 AVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFL 416
VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS++FL E+ +
Sbjct: 224 TVLYFEGERHHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGA--- 280
Query: 417 AGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGLKLQE 474
G ++ V M+G+R L E+QAL R G+ +RA +I++VL K+AGL LQ
Sbjct: 281 TGSSIVVTMEGTRPILAEVQALVTPTMFGNAKRTTTGLDFNRASLIMAVLEKRAGLLLQN 340
Query: 475 NAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKR 534
+L GV L E A DLAVA AI SS+ + P F+GE+GL GE+R V+R+E+R
Sbjct: 341 QDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKPTNPQECFVGELGLTGEIRRVNRIEQR 400
Query: 535 VSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
++ AKLG+ K VPK++ + ++++ IG ++EV+ VF
Sbjct: 401 INEAAKLGFTKIYVPKNSLTGITPP--KEIQVIGVTTIQEVLKKVF 444
>gi|254973678|ref|ZP_05270150.1| DNA repair protein RadA [Clostridium difficile QCD-66c26]
gi|255091070|ref|ZP_05320548.1| DNA repair protein RadA [Clostridium difficile CIP 107932]
gi|255312723|ref|ZP_05354306.1| DNA repair protein RadA [Clostridium difficile QCD-76w55]
gi|255648576|ref|ZP_05395478.1| DNA repair protein RadA [Clostridium difficile QCD-37x79]
gi|260681796|ref|YP_003213081.1| DNA repair protein RadA [Clostridium difficile CD196]
gi|260685393|ref|YP_003216526.1| DNA repair protein RadA [Clostridium difficile R20291]
gi|384359347|ref|YP_006197199.1| DNA repair protein RadA [Clostridium difficile BI1]
gi|260207959|emb|CBA60090.1| DNA repair protein [Clostridium difficile CD196]
gi|260211409|emb|CBE01490.1| DNA repair protein [Clostridium difficile R20291]
Length = 457
Score = 350 bits (897), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 186/470 (39%), Positives = 287/470 (61%), Gaps = 23/470 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T +VC CGY +W G C C T +S + V KP + +
Sbjct: 5 KTKYVCQSCGYETAKWLGKCPECTKWNTFVEEIDQKSTKKEVFIIDKSSSKPVSINSIES 64
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
E + + NE+ RVLGGG+V GSLVL+GGDPG+GKSTLL+Q+++
Sbjct: 65 KEEERFTTDI-----------NELDRVLGGGIVKGSLVLVGGDPGIGKSTLLIQVSS--- 110
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+V +LG+ V+Y++GEES QI RA R+ I +E L++++ ++ I ++ ++P +
Sbjct: 111 NVANLGKT--VLYITGEESESQIKMRAKRLGINSENLYIFAENNLSIIESYLESVNPELI 168
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
I+DSIQTV+ ++ + G + Q+KE TS ++ +KK I + GHVTK G +AGP++LE
Sbjct: 169 ILDSIQTVFSPEISSAPGTVSQIKEGTSKFMKISKKMGISTFIVGHVTKEGSLAGPKLLE 228
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EGE++++YRL+R+VKNRFGST+ELGVFEM LGL + NPSKI +SE+ D
Sbjct: 229 HMVDTVLYFEGERYNTYRLVRAVKNRFGSTNELGVFEMRDLGLVELDNPSKILISEKPKD 288
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVLMKQAGL 470
+AG + ++G+R L+E+QAL S R G+ +R M+++VL K+ GL
Sbjct: 289 ---VAGSVIISTVEGTRPMLLELQALVSPTSFGIPKRTSTGVDYNRVGMLLAVLEKRVGL 345
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
++Q +++N+V G+ + E + DL +A ++ SSF PI IA GE+GL GE+R VS
Sbjct: 346 QIQNQDVYINIVGGIKINEPSIDLGIAISVASSFRNIPIDENIAVTGEVGLTGEVRAVSF 405
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+EKR++ KLG++K +VP+S + + +E NL++ IN+V
Sbjct: 406 IEKRIAECKKLGFKKIVVPRSNYDVVKET--KGIEIWPVDNLRQAINIVL 453
>gi|333384259|ref|ZP_08475899.1| DNA repair protein RadA [Dysgonomonas gadei ATCC BAA-286]
gi|332826752|gb|EGJ99569.1| DNA repair protein RadA [Dysgonomonas gadei ATCC BAA-286]
Length = 455
Score = 350 bits (897), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 194/470 (41%), Positives = 284/470 (60%), Gaps = 22/470 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
++ +VCS+CG +W G C C T S E + + +P+ L
Sbjct: 5 KSVYVCSNCGNDSPKWLGKCPVCGEWNTYVEEII--SKEKSTAKSGLHIFDTTKAKPLLL 62
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
+V G + P L E+ RVLGGGLVPGSLVLIGG+PG+GKSTL+LQ +
Sbjct: 63 KDVQTGEE------PRIDLHDGELNRVLGGGLVPGSLVLIGGEPGIGKSTLILQTVLGLN 116
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+ L Y+SGEES Q+ RADR+ +E F+ T++E I +Q L+P +
Sbjct: 117 GIKTL-------YISGEESARQLKLRADRINSNSENCFIVCETNLEHIFVHIQNLNPEFV 169
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQTV+ V S G + QV+EC++A+L+FAK+TN PV+L GH+ K G IAGP+VLE
Sbjct: 170 IIDSIQTVFTDAVESSPGSVSQVRECSAAILKFAKETNTPVVLIGHINKEGSIAGPKVLE 229
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
HIVD VL EG++ YR+LRS+KNRFGST ELG++EM Q GL+ VSNPS++ L++ H
Sbjct: 230 HIVDTVLQFEGDQHYMYRILRSIKNRFGSTAELGIYEMRQNGLREVSNPSELLLTQNH-- 287
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMKQAGL 470
E L+G++++ ++G R FLIE QAL + + T R G R +M+++VL K+AG
Sbjct: 288 -EGLSGVSISASIEGIRPFLIETQALVSTAAYGTPQRSATGFDLRRMNMLLAVLEKRAGF 346
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
KL + +FLN+ G+ + + DL+V +A+ SS L+ I + GE+GL GE+R V+R
Sbjct: 347 KLIQKDVFLNIAGGLKVNDPGMDLSVISAVLSSSLDISIEKHVCMTGEVGLSGEIRPVNR 406
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+E+R+ KLG+ K +VP++ K + +E I + ++E +F
Sbjct: 407 IEQRILEAEKLGFSKILVPQNNLKGFTSK--VNIEIIQVRKVEEAFRQLF 454
>gi|225010199|ref|ZP_03700671.1| DNA repair protein RadA [Flavobacteria bacterium MS024-3C]
gi|225005678|gb|EEG43628.1| DNA repair protein RadA [Flavobacteria bacterium MS024-3C]
Length = 453
Score = 350 bits (897), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 197/484 (40%), Positives = 288/484 (59%), Gaps = 50/484 (10%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTM----------KRYSAGESDEGPVVQRTWLPQ 162
+T++ C +CG +W G C AC+ T+ K + AG S V++ P
Sbjct: 5 KTSFFCQNCGQNYAKWVGQCSACKQWNTVVEEVLEAPEKKAWKAGSSG----VKKANKPL 60
Query: 163 KPEEVQP---VRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVG 219
K E+ VRL +N+ E RVLGGGLVPGSLVL+GG+PG+G
Sbjct: 61 KIGEISTETEVRLDTLNQ-----------------EFNRVLGGGLVPGSLVLLGGEPGIG 103
Query: 220 KSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIED 279
KSTLLLQ+A L P +YVSGEES +QI RADR++ +E F+ + T +
Sbjct: 104 KSTLLLQIA--------LSLPYKTLYVSGEESQKQIKMRADRILPTSENCFILTETKTQH 155
Query: 280 IVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHV 339
I ++ + P L+IDSIQT+ + +AG + Q+KECT+ L+ FAK+TN PV+L GH+
Sbjct: 156 IFTQIAEIQPDILVIDSIQTLQTDHIESAAGSVSQIKECTAELISFAKETNTPVILIGHI 215
Query: 340 TKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVS 399
TK G +AGP++LEH+VD VL EG++ YR+LR+ KNRFG+T ELG++EM GL+ V+
Sbjct: 216 TKDGSLAGPKILEHMVDTVLQFEGDRNYVYRILRANKNRFGATAELGIYEMHGAGLREVN 275
Query: 400 NPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRA 457
NPS+I +S+Q E L+G A+A +DG R ++EIQAL + T R G A R
Sbjct: 276 NPSEILISKQ---DEGLSGTAIAASLDGMRPLMVEIQALVSTAVYGTPQRSTTGYNAKRL 332
Query: 458 DMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIG 517
+M+++VL K+AG L +FLN+ G+++ + A DLAV AI SS + PI F
Sbjct: 333 NMLLAVLEKRAGFHLGAKDVFLNITGGISIEDPAIDLAVIGAILSSNQDHPIDRSFCFAA 392
Query: 518 EIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVIN 577
E+GL GE+R V R+++R++ AKLG+ IV K + S G ++ IG ++E++
Sbjct: 393 EVGLAGEIRPVQRVDQRITEAAKLGFEHIIVSKHNKMSAKPTG---IKVIGLGRVEEMVE 449
Query: 578 VVFT 581
++F+
Sbjct: 450 LLFS 453
>gi|224367517|ref|YP_002601680.1| DNA repair protein RadA [Desulfobacterium autotrophicum HRM2]
gi|223690233|gb|ACN13516.1| RadA [Desulfobacterium autotrophicum HRM2]
Length = 453
Score = 350 bits (897), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 189/475 (39%), Positives = 286/475 (60%), Gaps = 28/475 (5%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTM--KRYSAGESDEGPVVQRTWLPQKPEEV 167
K ++ + C +CG+ QW G C C T+ +R + G + P +
Sbjct: 3 KKEKSIFRCQNCGFQSPQWIGKCPDCGGWDTLTPERQRPVKGAGGKLSSNYTRPVPMAAI 62
Query: 168 QPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQM 227
+ + G+ + D RVLGGG+VPG+LVLIGGDPG+GKSTL+LQ+
Sbjct: 63 EFEEEPRIQTGIGEFD--------------RVLGGGIVPGTLVLIGGDPGIGKSTLMLQV 108
Query: 228 AAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPL 287
A++++ +YVSGEES+ Q+ R R+ T + + + TD++DI+ +
Sbjct: 109 LAMLSNAG-----KKTLYVSGEESIRQLKMRGKRLASETISMLVAAETDLDDILAMAEHE 163
Query: 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAG 347
P A+++DSIQTVY +A + G + Q++E + L+ AKKT IP+ L GHVTK G IAG
Sbjct: 164 MPAAMVVDSIQTVYSPEIASTPGSVTQIREASMRLMTMAKKTGIPLFLVGHVTKGGAIAG 223
Query: 348 PRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLS 407
PR++EH+VD VLY EG++ +R+LR+VKNRFGST+E+GVFEM GL+ V NPS +FLS
Sbjct: 224 PRIMEHMVDTVLYFEGDRSHVFRILRAVKNRFGSTNEIGVFEMKGQGLEEVPNPSAVFLS 283
Query: 408 EQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLM 465
E+ ++ G V M+G+R L+EIQ L S S T R V G+ +R +I +V+
Sbjct: 284 ERPVNT---PGSVVTASMEGTRPILVEIQGLASSSSFGTPRRTVLGLDPNRVALIAAVME 340
Query: 466 KQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGEL 525
K+ G+ L IF+NV GV +TE A DL VA A+ SSFL+ P+P G +GE+GL GE+
Sbjct: 341 KRLGMNLSGLDIFMNVAGGVKVTEPAADLGVAIALASSFLDRPVPEGTTVLGEVGLTGEI 400
Query: 526 RMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
R VS +E+R+ K+G+ +C+VP ++ K + + +++ G +LK+++ +VF
Sbjct: 401 RAVSHVEQRIKEAVKMGFTRCLVPANSLKQIPEIAGTRID--GVSSLKQIMALVF 453
>gi|326804276|ref|YP_004322094.1| DNA repair protein RadA [Aerococcus urinae ACS-120-V-Col10a]
gi|326650375|gb|AEA00558.1| DNA repair protein RadA [Aerococcus urinae ACS-120-V-Col10a]
Length = 462
Score = 349 bits (896), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 199/473 (42%), Positives = 284/473 (60%), Gaps = 21/473 (4%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQP 169
K +T + C CGY QW+G C C + T++ E G +++ ++ +P
Sbjct: 4 KKRKTVYTCQACGYESPQWYGKCPQCGAWNTLEE----EVIAGKPIRQAGTEVNQKKAKP 59
Query: 170 VRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAA 229
RL EV+ Q + + +GL E RVLGGG+VPGSL LIGGDPG+GKSTLLLQ+A
Sbjct: 60 ERLKEVS----QAEEKRVKTGL--GEFNRVLGGGVVPGSLALIGGDPGIGKSTLLLQVAK 113
Query: 230 IIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSP 289
++D V+YVSGEES+ QI RADR+ + F+Y+ TD+ I +
Sbjct: 114 QLSD-----NGGRVLYVSGEESLHQIKMRADRLGYQDADFFVYAETDLLAIQAAISDTQA 168
Query: 290 RALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPR 349
++IDSIQT+ AG + QV+E T L+ AK + I + + GHVTK G+IAGPR
Sbjct: 169 DFVVIDSIQTMVHPNNESLAGSVSQVREATGELMHIAKSSGIAIFVVGHVTKEGNIAGPR 228
Query: 350 VLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQ 409
+LEH+VD VLY+EGEK +++R+LR+VKNRFGST+E+GVF+M GL+ V+NPS++FL E+
Sbjct: 229 ILEHMVDTVLYLEGEKHNTFRILRAVKNRFGSTNEIGVFDMKSQGLEEVTNPSQLFLEER 288
Query: 410 HSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMKQ 467
+ G AV M+G+R L EIQAL + + R +G+ SR +I++VL K+
Sbjct: 289 LMGAN---GSAVVASMEGTRPILTEIQALLSATAFGNARRTASGLDYSRVTLIMAVLEKR 345
Query: 468 AGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRM 527
A L LQ +L GV L E A DLA+A A+ SS+ E F+GEIGL GE+R
Sbjct: 346 AHLMLQNQDAYLKSTGGVKLDEPAIDLAIAIAVASSYWEKETQASDCFVGEIGLTGEIRR 405
Query: 528 VSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+SR+ +R+ KLG+++ +P + LAT + +E IG K L +V+ VF
Sbjct: 406 ISRINERIQEAEKLGFKRIFIPYGNLQGLAT-DSQDIEIIGAKTLTQVLKEVF 457
>gi|352516195|ref|YP_004885512.1| DNA repair protein RadA [Tetragenococcus halophilus NBRC 12172]
gi|348600302|dbj|BAK93348.1| DNA repair protein RadA [Tetragenococcus halophilus NBRC 12172]
Length = 456
Score = 349 bits (896), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 203/477 (42%), Positives = 289/477 (60%), Gaps = 28/477 (5%)
Query: 109 GKANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQ 168
K +T + C +CGY ++ G C C S +M ++ + +R ++Q
Sbjct: 2 AKKVKTQFECQNCGYISPRYLGKCPNCGSWNSMVEEKLQDTTD----RRNRTTLTGSKMQ 57
Query: 169 PVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMA 228
P L +V + + + R+ S +E+ RVLGGG+VPGS++L+GGDPG+GKSTLLLQ++
Sbjct: 58 PTLLKDV---VPKKEPRVKTSL---DELNRVLGGGVVPGSMILLGGDPGIGKSTLLLQVS 111
Query: 229 AIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLS 288
+A V+YVSGEES EQI RA R+ A + +L++ T ++DI E ++ L
Sbjct: 112 QQLAATG-----GTVLYVSGEESAEQIKLRAQRLGDAENDFYLFAETGMQDIRETIEKLQ 166
Query: 289 PRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGP 348
P +IIDSIQT+ ++ AG + QV+E T+ LL+ AK I V + GHVTK G IAGP
Sbjct: 167 PDYVIIDSIQTMTQPDISSVAGSVSQVRETTAELLKIAKSNEIAVFVVGHVTKEGSIAGP 226
Query: 349 RVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSE 408
R+LEH+VD VLY EG+K+ S+R+LR+VKNRFGST+E+G+FEM + GL+ VSNPS++FL E
Sbjct: 227 RMLEHMVDTVLYFEGDKYQSFRILRAVKNRFGSTNEIGIFEMYEQGLKEVSNPSQVFLEE 286
Query: 409 QHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMK 466
+ E +G A+ V M+G+R L+EIQAL R G+ +R +I++VL K
Sbjct: 287 RL---EGTSGSAIVVAMEGTRPILVEIQALVTPTMFGNAKRTATGLDFNRVSLIMAVLEK 343
Query: 467 QAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELR 526
+AGL LQ +L GV L E A DLA+A +I SS+ E FIGEIGL GE+R
Sbjct: 344 RAGLLLQNQDAYLKAAGGVKLNEPAIDLAIAISIASSYKEKGTKPTECFIGEIGLTGEIR 403
Query: 527 MVSRMEKRVSTVAKLGYRKCIVPK---SAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
VS +E+RV V KLG+ K +PK S K+ A +E +G L E + +F
Sbjct: 404 RVSAIEQRVKEVQKLGFEKVYIPKNNLSGWKAPA-----DIEVVGIATLDEALKRIF 455
>gi|261409550|ref|YP_003245791.1| DNA repair protein RadA [Paenibacillus sp. Y412MC10]
gi|329929235|ref|ZP_08282994.1| DNA repair protein RadA [Paenibacillus sp. HGF5]
gi|261286013|gb|ACX67984.1| DNA repair protein RadA [Paenibacillus sp. Y412MC10]
gi|328936794|gb|EGG33233.1| DNA repair protein RadA [Paenibacillus sp. HGF5]
Length = 455
Score = 349 bits (896), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 202/450 (44%), Positives = 281/450 (62%), Gaps = 29/450 (6%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKP---EEVQ 168
+T + C++CGY +W+G C C+S +M +E V +T P + +
Sbjct: 4 TKTKFFCTECGYEAPKWFGKCPGCQSWNSM-------VEETETVIKTQGMNSPLFHSKEK 56
Query: 169 PVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMA 228
P+ ++ + G + RI +G+ E+ RVLGGGLVPGSLVL+GGDPG+GKSTLLLQ +
Sbjct: 57 PLSIINIESGKEP---RIQ-TGI--AELNRVLGGGLVPGSLVLVGGDPGIGKSTLLLQAS 110
Query: 229 AIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLS 288
+A V+Y+SGEESV Q RADR+ + ELF+ T++E I E ++ +
Sbjct: 111 NRLAQ-----NGIRVLYISGEESVRQTKLRADRLGALSPELFVLCETNLESIEEAIENVQ 165
Query: 289 PRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGP 348
P ++IDSIQTVYL V + G + QV+ECT+ +R AK I +L GHVTK G IAGP
Sbjct: 166 PGFVVIDSIQTVYLPEVTSAPGSVSQVRECTARFMRLAKVKGIATVLVGHVTKEGAIAGP 225
Query: 349 RVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSE 408
R+LEH+VD VLY EGE+ +YRLLR+VKNRFGST+E+G+FEM + GL+ V NPS++FLSE
Sbjct: 226 RMLEHMVDCVLYFEGERHHTYRLLRAVKNRFGSTNEIGIFEMGEDGLREVGNPSELFLSE 285
Query: 409 QHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVS--RHVNGIQASRADMIISVLMK 466
+ +AG V M+G+R L+E+QAL + S R G+ R ++II+VL K
Sbjct: 286 RPLG---VAGSTVVASMEGTRPVLVELQALISTTHFPSPRRMGTGVDHHRMNLIIAVLEK 342
Query: 467 QAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELR 526
+ G+ LQ +LNV GV L E A DLA+A +I SSF + P GE+GL GE+R
Sbjct: 343 RMGMYLQTQDAYLNVAGGVKLDEPAVDLAIAVSIASSFRDIPTKPYDVIFGEVGLTGEVR 402
Query: 527 MVSRMEKRVSTVAKLGYRKCIVPKSAEKSL 556
VSR E+RV KLG+++ ++P EKSL
Sbjct: 403 AVSRAEQRVREAEKLGFKRVLMP---EKSL 429
>gi|257871410|ref|ZP_05651063.1| DNA repair protein RadA [Enterococcus gallinarum EG2]
gi|357051601|ref|ZP_09112775.1| DNA repair protein radA [Enterococcus saccharolyticus 30_1]
gi|257805574|gb|EEV34396.1| DNA repair protein RadA [Enterococcus gallinarum EG2]
gi|355379525|gb|EHG26682.1| DNA repair protein radA [Enterococcus saccharolyticus 30_1]
Length = 456
Score = 349 bits (896), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 198/444 (44%), Positives = 274/444 (61%), Gaps = 20/444 (4%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQP 169
K ++ +VC +CGY+ ++ G C C S +M E+ + V RT L + +QP
Sbjct: 3 KKAKSQFVCQNCGYSSPKYLGKCPNCGSWNSMVEEVIQETTDRRV--RTTL--TGQRMQP 58
Query: 170 VRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAA 229
++ +V + + P E+ RVLGGG+VPGSL+LIGGDPG+GKSTLLLQ++
Sbjct: 59 TKIADV------IPKKEPRVQTKLAELNRVLGGGVVPGSLILIGGDPGIGKSTLLLQVSQ 112
Query: 230 IIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSP 289
+A + V+YVSGEES EQI RA R+ E +LY TD+ +I + ++ L+P
Sbjct: 113 QLAAIG-----GKVLYVSGEESAEQIKMRAQRLGAIDTEFYLYPETDMSEISKAIENLTP 167
Query: 290 RALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPR 349
+IIDSIQT+ + AG + QV+E T+ LL+ AK I + + GHVTK G IAGPR
Sbjct: 168 DYVIIDSIQTMTQPDITSVAGSVSQVRETTAELLKLAKTNGIAIFIVGHVTKEGSIAGPR 227
Query: 350 VLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQ 409
+LEH+VD VLY EGEK S+R+LR+VKNRFGST+E+G+FEM GL+ V+NPS++FL E+
Sbjct: 228 MLEHMVDTVLYFEGEKHHSFRILRAVKNRFGSTNEIGIFEMEAGGLKEVANPSQVFLEER 287
Query: 410 HSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQ 467
E G A+ V M+GSR L+EIQAL R G+ +R +I++VL K+
Sbjct: 288 L---EGATGSAIVVAMEGSRPILVEIQALVTPTMFGNAKRTTTGLDFNRVSLIMAVLEKR 344
Query: 468 AGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRM 527
AGL LQ +L GV L E A DLA+A +I SS+ E FIGEIGL GE+R
Sbjct: 345 AGLLLQNQDAYLKAAGGVKLNEPAIDLAIAVSIASSYKEKGTSPTECFIGEIGLTGEIRR 404
Query: 528 VSRMEKRVSTVAKLGYRKCIVPKS 551
V+ +E+RV V KLG+ K +PK+
Sbjct: 405 VNAIEQRVKEVQKLGFTKVYLPKN 428
>gi|83816047|ref|YP_446598.1| DNA repair protein RadA [Salinibacter ruber DSM 13855]
gi|83757441|gb|ABC45554.1| DNA repair protein RadA [Salinibacter ruber DSM 13855]
Length = 459
Score = 349 bits (896), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 194/471 (41%), Positives = 285/471 (60%), Gaps = 25/471 (5%)
Query: 116 WVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQK---PEEVQPVRL 172
+VC +CG+ +W G C C + T+ + + E V + Q + QP +L
Sbjct: 8 YVCQECGHEAHKWMGKCTGCGAWNTLVKETESADVEAQVPDLSTDGQNGTAAAQNQPTQL 67
Query: 173 LEVN-KGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAII 231
EV +G +L + +E+ RV+GGG++ GS LI GDPG+GKSTL+ ++ +
Sbjct: 68 TEVEMEGESRLKTGV-------DELDRVMGGGIMQGSFSLIAGDPGIGKSTLMTELGGYL 120
Query: 232 ADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRA 291
++YV+GEES Q+ RA R+ + ++ L+L + T++++I V ++P
Sbjct: 121 PG-------RKILYVTGEESKRQVKLRAQRLGVDSDALYLLAETNVQEIANAVDDVAPDL 173
Query: 292 LIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVL 351
L+ DSIQT+Y + + G + QV+E T++LL+ K+ L GHVTK G IAGPRVL
Sbjct: 174 LVADSIQTIYRPDLTSAPGSVSQVRESTASLLKLTKEREFSTFLVGHVTKKGTIAGPRVL 233
Query: 352 EHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHS 411
EH+VD VLY EG++ +YR+LRSVKNRFG+ +E+GVFEM + GL+ V NPS+IFLSE+
Sbjct: 234 EHMVDTVLYFEGDQNHAYRILRSVKNRFGAANEIGVFEMREDGLREVPNPSEIFLSERGY 293
Query: 412 DSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVLMKQAG 469
++G V ++G+R L+EIQAL S ST R V G A R MI++VL K+AG
Sbjct: 294 G---VSGSTVVCSLEGTRPILVEIQALVTPTSYSTPQRTVTGFAAQRLQMILAVLEKRAG 350
Query: 470 LKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVS 529
L ++ +F+NV GV L E A DL VA A SSF + P G A IGE+GLGGE+R VS
Sbjct: 351 LAFSDHDVFINVAGGVKLEEPAVDLGVAIAAASSFRDIPADTGSALIGEVGLGGEIRTVS 410
Query: 530 RMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
R+E R+ AKLG+ + +VP++ +A G ++ G + LKEV++VV
Sbjct: 411 RVEPRLKEAAKLGFDRAVVPENNLDRIA--GDYDIDVTGAQQLKEVVDVVL 459
>gi|383451763|ref|YP_005358484.1| DNA repair protein RadA [Flavobacterium indicum GPTSA100-9]
gi|380503385|emb|CCG54427.1| DNA repair protein RadA [Flavobacterium indicum GPTSA100-9]
Length = 453
Score = 349 bits (896), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 182/440 (41%), Positives = 276/440 (62%), Gaps = 21/440 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T++ C +CG +W G C +C+ T+ + + ++ W Q E + +
Sbjct: 5 KTSFYCQNCGTNFSKWLGQCTSCKQWNTIVEEIIQKEE-----KQAWRSQSSENKKAPKP 59
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
L++N+ + R+ + +E+ RVLGGGLVPGSL L+GG+PG+GKSTLLLQ++
Sbjct: 60 LKINEISTSEEVRLNTTD---SELNRVLGGGLVPGSLTLLGGEPGIGKSTLLLQIS---- 112
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
L P +YVSGEES +QI RA+R+ ++ F+ + T ++I +++ + P +
Sbjct: 113 ----LRLPYKTLYVSGEESQKQIKMRAERITHQSDNCFILTETKTQNIFRQIEEIEPEVV 168
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQT+ + SAG + Q++ECT+ L++FAK+TN+PV+L GH+TK G IAGP++LE
Sbjct: 169 IIDSIQTLQTDYIESSAGSISQIRECTAELIKFAKETNVPVILIGHITKDGTIAGPKILE 228
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VL EG++ YR+LRS+KNRFGST ELG++EM GL+ VSNPS+I +S + +
Sbjct: 229 HMVDTVLQFEGDRNHVYRILRSLKNRFGSTAELGIYEMQGSGLREVSNPSEILISNKEN- 287
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
+L+G A+A ++G R +IEIQAL + T R G R +MI++VL K+AG
Sbjct: 288 --YLSGTAIATTLEGMRPLMIEIQALVSTAVYGTPQRSTTGYNLKRLNMILAVLEKRAGF 345
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
+L +FLN+ G+++ + A DLAV AAI SS + I F GE+GL GE+R V+R
Sbjct: 346 RLGAKDVFLNITGGISVDDPAIDLAVVAAILSSNEDITIDKDFCFAGEVGLTGEIRPVNR 405
Query: 531 MEKRVSTVAKLGYRKCIVPK 550
+E+R+ KLG+ V K
Sbjct: 406 VEQRIQEAEKLGFSTIFVSK 425
>gi|281492720|ref|YP_003354700.1| DNA repair protein RadA [Lactococcus lactis subsp. lactis KF147]
gi|281376377|gb|ADA65867.1| DNA repair protein RadA [Lactococcus lactis subsp. lactis KF147]
Length = 454
Score = 349 bits (896), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 196/474 (41%), Positives = 281/474 (59%), Gaps = 26/474 (5%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQP 169
K +++VC +CGY ++ G C C + + + V T KP ++
Sbjct: 3 KKKSSSFVCQNCGYKSAKYLGRCPNCGEWSSFVEEVEVQEVKNQRVSMTGERSKPLKLDE 62
Query: 170 VRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAA 229
V L + + LD E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++
Sbjct: 63 VELFDTPRIETDLD-----------EFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVST 111
Query: 230 IIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSP 289
L V+YVSGEES +QI RA+R+ + +LY+ T+++ I +V+ L P
Sbjct: 112 ------QLASRGRVLYVSGEESAQQIKLRAERLGDIDRDFYLYAETNMQSIRAEVERLKP 165
Query: 290 RALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPR 349
LIIDSIQT+ + + G + QV+E T L++ AK +I + GHVTK G +AGPR
Sbjct: 166 NFLIIDSIQTIMTPEIQSTQGSVSQVREVTGELMQIAKTNDIATFIVGHVTKEGQLAGPR 225
Query: 350 VLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQ 409
+LEH+VD VLY EGE+ +++R+LR+VKNRFGST+E+G+FEM GL V+NPS++FL E+
Sbjct: 226 MLEHMVDTVLYFEGERNNTFRILRAVKNRFGSTNEIGIFEMQGHGLVEVTNPSEVFLEER 285
Query: 410 HSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQ 467
S G A+ ++G+R L+EIQAL R +G+ +R +I++VL K+
Sbjct: 286 LEGS---TGSAIVCALEGTRPILVEIQALTTPTMFGNAKRTTSGLDFNRVSLIMAVLEKR 342
Query: 468 AGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRM 527
GL +Q +L GV L E A DLAVA A+ SS+ E P FIGEIGL GE+R
Sbjct: 343 TGLLMQNQDAYLKSAGGVKLDEPAIDLAVAVAVASSYKELPTDARECFIGEIGLTGEIRR 402
Query: 528 VSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGF-EQMEFIGCKNLKEVINVVF 580
V+R+E+R++ AKLG++K PK+ S+ + EQ++ IG L E + +VF
Sbjct: 403 VTRIEQRLNEAAKLGFKKVYAPKN---SIVGIDIPEQIQVIGVTTLTECLKLVF 453
>gi|319940296|ref|ZP_08014648.1| DNA repair protein radA [Streptococcus anginosus 1_2_62CV]
gi|319810598|gb|EFW06934.1| DNA repair protein radA [Streptococcus anginosus 1_2_62CV]
Length = 465
Score = 349 bits (895), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 198/471 (42%), Positives = 277/471 (58%), Gaps = 26/471 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T +VC +C Y ++ G C C + + + V T +P ++ V
Sbjct: 17 KTTFVCQNCEYHSPKYLGRCPNCGAWSSFVEEVEVAEVKNARVSLTGEKSRPMKLAEVTS 76
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
+ VN+ +D E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++
Sbjct: 77 INVNRTKTDMD-----------EFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVST--- 122
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
L V+YVSGEES EQI RA+R+ E +LY+ T+++ I +++ + P L
Sbjct: 123 ---QLSHKGTVLYVSGEESAEQIKLRAERLGDIDSEFYLYAETNMQQIRAEIEKIKPDFL 179
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQT+ ++ G + QV+E T+ L++ AK NI + GH+TK G +AGPR LE
Sbjct: 180 IIDSIQTILSPEISSVQGSVSQVREVTAELMQLAKTNNIATFIVGHMTKEGTLAGPRTLE 239
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS++FL E+
Sbjct: 240 HMVDTVLYFEGERQHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQLFLEERLDG 299
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
+ G ++ V M+G+R L E+QAL R G+ +RA +I++VL K+AGL
Sbjct: 300 A---TGSSIVVTMEGTRPILAEVQALVTPTMFGNAKRTTTGLDFNRASLIMAVLEKRAGL 356
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ +L GV L E A DLAVA AI SS+ + P FIGEIGL GE+R V+R
Sbjct: 357 LLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDLPTNPQECFIGEIGLTGEIRRVNR 416
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGF-EQMEFIGCKNLKEVINVVF 580
+E+R++ AKLG+ K PK+ SL L E +E IG + EV+ VF
Sbjct: 417 IEQRINEAAKLGFTKVYAPKN---SLNGLNIPETIEVIGVTTIGEVLKKVF 464
>gi|282859580|ref|ZP_06268684.1| DNA repair protein RadA [Prevotella bivia JCVIHMP010]
gi|424899564|ref|ZP_18323106.1| DNA repair protein RadA [Prevotella bivia DSM 20514]
gi|282587631|gb|EFB92832.1| DNA repair protein RadA [Prevotella bivia JCVIHMP010]
gi|388591764|gb|EIM32003.1| DNA repair protein RadA [Prevotella bivia DSM 20514]
Length = 465
Score = 349 bits (895), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 195/485 (40%), Positives = 286/485 (58%), Gaps = 40/485 (8%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESD-------------EGPVVQRT 158
++ +VCS+CG+ +W G C C T K + G R
Sbjct: 4 DKIAYVCSNCGHESAKWIGKCPNCGQWNTFKEFRVATDSGTSAAKNAATMLRNGTTGARA 63
Query: 159 WLPQKPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGV 218
L KP+ ++ + + D RI ++ +E+ RVLGGG+VPGS++L+GG+PG+
Sbjct: 64 NLTNKPQRLRDIS--------SKDDPRIDMND---SELNRVLGGGMVPGSIILLGGEPGI 112
Query: 219 GKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIAT-EELFLYSSTDI 277
GKSTL LQ L V+YVSGEES QI RA+R+ E + + S T +
Sbjct: 113 GKSTLTLQTI--------LHLNLSVLYVSGEESPHQIKMRAERITKDIPENVVILSETSL 164
Query: 278 EDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAG 337
E I E + + P+ L+IDSIQT+ V S G + QV+EC SALLRFAK + IPV+L G
Sbjct: 165 EHIFEHAKDVKPQLLVIDSIQTIATEDVDSSPGSVTQVRECASALLRFAKTSGIPVILIG 224
Query: 338 HVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQA 397
H+ K G IAGP++LEHIVD V+ EG++ YR+LRS+KNRFGST ELG++EM Q GL+
Sbjct: 225 HINKEGTIAGPKILEHIVDTVIQFEGDQHYMYRILRSIKNRFGSTSELGIYEMQQQGLRQ 284
Query: 398 VSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQAS 455
VSNPS++ L+ H E L+G+A++ ++G R FL+E QAL S + T R G
Sbjct: 285 VSNPSELLLTGDH---EGLSGVAISSAIEGVRPFLVETQALVSSAAYGTPQRSATGFDGR 341
Query: 456 RADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAF 515
R +M+++VL K+ G K+ + +FLN+ G+ +T+ A DL+V AA+ SS L+ PI G
Sbjct: 342 RLNMLLAVLEKRVGFKIMQKDVFLNIAGGLRVTDMAMDLSVIAAVISSNLDMPIEQGWCM 401
Query: 516 IGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEV 575
GE+GL GE+R V+R+E+R++ KLG++ I+PK + L G ++ + ++E
Sbjct: 402 CGEVGLSGEVRPVNRIEQRIAEAEKLGFKDIIIPKYNTQGLT--GKYTIKIHPVRKVEEA 459
Query: 576 INVVF 580
I +F
Sbjct: 460 IRELF 464
>gi|126697593|ref|YP_001086490.1| DNA repair protein RadA [Clostridium difficile 630]
gi|255099185|ref|ZP_05328162.1| DNA repair protein RadA [Clostridium difficile QCD-63q42]
gi|255304968|ref|ZP_05349140.1| DNA repair protein RadA [Clostridium difficile ATCC 43255]
gi|423089366|ref|ZP_17077726.1| DNA repair protein RadA [Clostridium difficile 70-100-2010]
gi|115249030|emb|CAJ66841.1| DNA repair protein [Clostridium difficile 630]
gi|357558302|gb|EHJ39801.1| DNA repair protein RadA [Clostridium difficile 70-100-2010]
Length = 457
Score = 349 bits (895), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 186/470 (39%), Positives = 287/470 (61%), Gaps = 23/470 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T +VC CGY +W G C C T +S + V KP + +
Sbjct: 5 KTKYVCQSCGYETAKWLGKCPECTKWNTFVEEIDQKSTKKEVFIIDKSSSKPVSINSIES 64
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
E + + NE+ RVLGGG+V GSLVL+GGDPG+GKSTLL+Q+++
Sbjct: 65 KEEERFTTDI-----------NELDRVLGGGIVKGSLVLVGGDPGIGKSTLLIQVSS--- 110
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+V +LG+ V+Y++GEES QI RA R+ I +E L++++ ++ I ++ ++P +
Sbjct: 111 NVANLGKT--VLYITGEESESQIKMRAKRLGINSENLYIFAENNLSIIESYLESVNPELI 168
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
I+DSIQTV+ ++ + G + Q+KE TS ++ +KK I + GHVTK G +AGP++LE
Sbjct: 169 ILDSIQTVFSPEISSAPGTVSQIKEGTSKFMKISKKMGISTFIVGHVTKEGSLAGPKLLE 228
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EGE++++YRL+R+VKNRFGST+ELGVFEM LGL + NPSKI +SE+ D
Sbjct: 229 HMVDTVLYFEGERYNTYRLVRAVKNRFGSTNELGVFEMRDLGLVELDNPSKILISEKPKD 288
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVLMKQAGL 470
+AG + ++G+R L+E+QAL S R G+ +R M+++VL K+ GL
Sbjct: 289 ---VAGSVIISTVEGTRPMLLELQALVSPTSFGIPKRTSTGVDYNRVGMLLAVLEKRVGL 345
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
++Q +++N+V G+ + E + DL +A ++ SSF PI IA GE+GL GE+R VS
Sbjct: 346 QIQNQDVYINIVGGIKINEPSIDLGIAISVASSFRNIPIDEDIAVTGEVGLTGEVRAVSF 405
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+EKR++ KLG++K +VP+S + + +E NL++ IN+V
Sbjct: 406 IEKRIAECKKLGFKKIVVPRSNYDVVKET--KGIEIWPVDNLRQAINIVL 453
>gi|15674046|ref|NP_268221.1| DNA repair protein RadA [Lactococcus lactis subsp. lactis Il1403]
gi|385831593|ref|YP_005869406.1| DNA repair protein RadA [Lactococcus lactis subsp. lactis CV56]
gi|418037821|ref|ZP_12676186.1| hypothetical protein LLCRE1631_00993 [Lactococcus lactis subsp.
cremoris CNCM I-1631]
gi|12725116|gb|AAK06162.1|AE006436_11 DNA repair protein RadA [Lactococcus lactis subsp. lactis Il1403]
gi|326407601|gb|ADZ64672.1| DNA repair protein RadA [Lactococcus lactis subsp. lactis CV56]
gi|354694099|gb|EHE93795.1| hypothetical protein LLCRE1631_00993 [Lactococcus lactis subsp.
cremoris CNCM I-1631]
Length = 453
Score = 349 bits (895), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 195/471 (41%), Positives = 281/471 (59%), Gaps = 26/471 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
++++VC +CGY ++ G C C + + + V T KP ++ V L
Sbjct: 5 KSSFVCQNCGYKSAKYLGRCPNCGEWSSFVEEVEVQEVKNQRVSMTGERSKPLKLDEVEL 64
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
+ + LD E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++
Sbjct: 65 FDTPRIETDLD-----------EFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVST--- 110
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
L V+YVSGEES +QI RA+R+ + +LY+ T+++ I +V+ L P L
Sbjct: 111 ---QLASRGRVLYVSGEESAQQIKLRAERLGDIDRDFYLYAETNMQSIRAEVERLKPNFL 167
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQT+ + + G + QV+E T L++ AK +I + GHVTK G +AGPR+LE
Sbjct: 168 IIDSIQTIMTPEIQSTQGSVSQVREVTGELMQIAKTNDIATFIVGHVTKEGQLAGPRMLE 227
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EGE+ +++R+LR+VKNRFGST+E+G+FEM GL V+NPS++FL E+
Sbjct: 228 HMVDTVLYFEGERNNTFRILRAVKNRFGSTNEIGIFEMQGHGLVEVTNPSEVFLEERLEG 287
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
S G A+ ++G+R L+EIQAL R +G+ +R +I++VL K+ GL
Sbjct: 288 S---TGSAIVCALEGTRPILVEIQALTTPTMFGNAKRTTSGLDFNRVSLIMAVLEKRTGL 344
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
+Q +L GV L E A DLAVA A+ SS+ E P FIGEIGL GE+R V+R
Sbjct: 345 LMQNQDAYLKSAGGVKLDEPAIDLAVAVAVASSYKELPTDARECFIGEIGLTGEIRRVTR 404
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGF-EQMEFIGCKNLKEVINVVF 580
+E+R++ AKLG++K PK+ S+ + EQ++ IG L E + +VF
Sbjct: 405 IEQRLNEAAKLGFKKVYAPKN---SIVGIDIPEQIQVIGVTTLTECLKLVF 452
>gi|402310778|ref|ZP_10829739.1| DNA repair protein RadA [Eubacterium sp. AS15]
gi|400367007|gb|EJP20026.1| DNA repair protein RadA [Eubacterium sp. AS15]
Length = 503
Score = 349 bits (895), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 191/468 (40%), Positives = 283/468 (60%), Gaps = 20/468 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T + C +CGY +WWG+C C + + E + ++ L E PVRL
Sbjct: 44 KTKYTCENCGYETSKWWGICPKCRTADSFHEEVYTEKTK-KAQKQIELMTGGENTDPVRL 102
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
EV G D+ +G+ E RVLGGG+V GSLVLIGGDPG+GKST+LLQ+ I
Sbjct: 103 CEVTGG----DYTRFSTGIA--EFDRVLGGGIVNGSLVLIGGDPGIGKSTILLQLTNNIC 156
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+ V+YVS EES+EQI RADR+ ++ + + T++E I K+ S +
Sbjct: 157 KIK------KVLYVSAEESLEQIKLRADRIFSKDSDILIMAQTNLEVIESKLSDQSFDVV 210
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQTV G + QVK+ + L++ K NI + GHVTK G IAGPRVLE
Sbjct: 211 IIDSIQTVSTASSDSLPGSVTQVKDIANRLMKICKSRNICCFIVGHVTKDGAIAGPRVLE 270
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EGEKF+SYR++R+VKNRFGST+ELGVFEM+ GL V NPSK+ LSE ++
Sbjct: 271 HLVDTVLYFEGEKFNSYRMIRAVKNRFGSTNELGVFEMTDRGLIEVDNPSKMLLSENTNE 330
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVS--RHVNGIQASRADMIISVLMKQAGL 470
+ +G A+ ++G+R LIEIQ+L +S S S R G+ +R +M+++VL K A +
Sbjct: 331 N---SGTAIVSSVEGTRPMLIEIQSLVISTSFPSPRRTGTGVDYNRLNMLLAVLEKHAKI 387
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
+Q +++N+ G+ ++E DL V AI SS+ + P+ +A GE+GL GE+R VS
Sbjct: 388 NIQSYDVYVNLTGGIKISEPFIDLGVIIAIASSYYDTPVKKNLAICGEVGLTGEIRSVSF 447
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINV 578
++ R++ K+G+ + ++P S K + ++++ G KN+K+ + +
Sbjct: 448 VQNRINEALKMGFEEILIPSSNLKDIKL--SDKIKITGVKNIKDALKI 493
>gi|393198913|ref|YP_006460755.1| ATP-dependent serine protease [Solibacillus silvestris StLB046]
gi|406666956|ref|ZP_11074719.1| DNA repair protein RadA [Bacillus isronensis B3W22]
gi|327438244|dbj|BAK14609.1| predicted ATP-dependent serine protease [Solibacillus silvestris
StLB046]
gi|405385239|gb|EKB44675.1| DNA repair protein RadA [Bacillus isronensis B3W22]
Length = 457
Score = 349 bits (895), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 194/443 (43%), Positives = 277/443 (62%), Gaps = 24/443 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGP--VVQRTWLPQKPEEVQPV 170
++ ++CS CGY +W G C C TM S +GP Q + K P+
Sbjct: 5 KSKFMCSSCGYEAAKWMGRCPGCGEWNTMNEEVEVIS-KGPRGAFQHSTTATK---ATPI 60
Query: 171 RLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAI 230
+EV Q + RI NE RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++A+
Sbjct: 61 IHVEV-----QEETRIATEM---NEFNRVLGGGIVPGSLVLIGGDPGIGKSTLLLQVSAL 112
Query: 231 IADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPR 290
+++ + V+Y+SGEESV Q RA+R+ + T EL++YS T++E + + + + P+
Sbjct: 113 LSN-----QGKRVLYISGEESVRQTKLRAERLGVHTPELYIYSETNLEFLNQTIDEVQPK 167
Query: 291 ALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRV 350
+I+DSIQTV+ V + G + QV+ECT+ L+R AK NI + L GHVTK G IAGPR+
Sbjct: 168 FVIVDSIQTVHHPEVTSAPGSVSQVRECTAELMRIAKTKNIAIFLVGHVTKEGQIAGPRI 227
Query: 351 LEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQH 410
LEH+VD VLY EGE+ ++R+LRS KNRFGST+E+ +FEM GL+ V NPS++FL E+
Sbjct: 228 LEHMVDTVLYFEGERHHNHRILRSQKNRFGSTNEIAIFEMLHGGLKEVLNPSELFLQER- 286
Query: 411 SDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVLMKQA 468
S+ G + M+G+R L+EIQ+L S + R G+ +R ++++VL K+
Sbjct: 287 --SQGAPGSTIVASMEGTRPILVEIQSLVTPTSFNYPKRMATGVDQNRVQLLMAVLEKRM 344
Query: 469 GLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMV 528
G+ LQ ++ V GV L E A DLAV +I SSF + + FIGE+GL GE+R V
Sbjct: 345 GMMLQAQDAYIKVAGGVKLDEPAIDLAVLTSIVSSFKDQTVRPTDCFIGEVGLTGEVRRV 404
Query: 529 SRMEKRVSTVAKLGYRKCIVPKS 551
SR+E+RV AKLG+++ +P S
Sbjct: 405 SRIEQRVQEAAKLGFKRAFIPAS 427
>gi|298387984|ref|ZP_06997532.1| DNA repair protein RadA [Bacteroides sp. 1_1_14]
gi|298259250|gb|EFI02126.1| DNA repair protein RadA [Bacteroides sp. 1_1_14]
Length = 455
Score = 349 bits (895), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 192/476 (40%), Positives = 288/476 (60%), Gaps = 34/476 (7%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKP------EE 166
+T +VCS+CG +W G C +C G Y +V++ ++P ++
Sbjct: 5 KTVYVCSNCGQESPKWVGKCPSC---GEWNTYVE------EIVRKETTNRRPVSGIETQK 55
Query: 167 VQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQ 226
+PV L E+ + P + +E+ RVLGGGLVPGSLVLIGG+PG+GKSTL++Q
Sbjct: 56 AKPVILSEIEADDE------PRINMHDDELNRVLGGGLVPGSLVLIGGEPGIGKSTLVMQ 109
Query: 227 MAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQP 286
+ D ++YVSGEES Q+ RADR+ + + + T +E I ++
Sbjct: 110 TVLRMPD-------KKILYVSGEESARQLKLRADRLSEVSSDCLIVCETSLEQIYVHIKN 162
Query: 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIA 346
SP +IIDSIQT+ + S G + QV+EC++++LRFAK+T+ PVLL GH+ K G IA
Sbjct: 163 TSPDLVIIDSIQTISTENIESSPGSIAQVRECSASILRFAKETHTPVLLIGHINKEGSIA 222
Query: 347 GPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFL 406
GP+VLEHIVD VL EG++ YR+LRS+KNRFGST ELG++EM Q GL+ VSNPS++ L
Sbjct: 223 GPKVLEHIVDTVLQFEGDQHYMYRILRSIKNRFGSTAELGIYEMRQDGLRQVSNPSELLL 282
Query: 407 SEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVL 464
S+ H E ++G+A+A ++G R FLIE QAL S R G R +M+++VL
Sbjct: 283 SQDH---EGMSGVAIASAIEGVRPFLIETQALVSSAVYGNPQRSATGFDIRRMNMLLAVL 339
Query: 465 MKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGE 524
K+ G KL + +FLN+ G+ + + A DLAV +AI SS ++ + + GEIGL GE
Sbjct: 340 EKRVGFKLAQKDVFLNIAGGLKVNDPAIDLAVISAILSSNMDAAVEPEVCMAGEIGLSGE 399
Query: 525 LRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+R V+R+E+R+ KLG+++ ++PK + + T ++E + K ++E +F
Sbjct: 400 IRPVNRIEQRIGEAEKLGFKRFLLPKYNLQGIDTQKL-KIELVPVKKVEEAFRALF 454
>gi|423080677|ref|ZP_17069296.1| DNA repair protein RadA [Clostridium difficile 002-P50-2011]
gi|423085124|ref|ZP_17073581.1| DNA repair protein RadA [Clostridium difficile 050-P50-2011]
gi|357550772|gb|EHJ32581.1| DNA repair protein RadA [Clostridium difficile 050-P50-2011]
gi|357552741|gb|EHJ34508.1| DNA repair protein RadA [Clostridium difficile 002-P50-2011]
Length = 457
Score = 349 bits (895), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 186/470 (39%), Positives = 287/470 (61%), Gaps = 23/470 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T +VC CGY +W G C C T +S + V KP + +
Sbjct: 5 KTKYVCQSCGYETAKWLGKCPECTKWNTFVEEIDQKSTKKEVFIIDKSSSKPVSINSIES 64
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
E + + NE+ RVLGGG+V GSLVL+GGDPG+GKSTLL+Q+++
Sbjct: 65 KEEERFTTDI-----------NELDRVLGGGIVKGSLVLVGGDPGIGKSTLLIQVSS--- 110
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+V +LG+ V+Y++GEES QI RA R+ I +E L++++ ++ I ++ ++P +
Sbjct: 111 NVANLGKT--VLYITGEESESQIKMRAKRLGINSENLYIFAENNLSIIESYLESVNPELI 168
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
I+DSIQTV+ ++ + G + Q+KE TS ++ +KK I + GHVTK G +AGP++LE
Sbjct: 169 ILDSIQTVFSPEISSAPGTVSQIKEGTSKFMKISKKMGISTFIVGHVTKEGSLAGPKLLE 228
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EGE++++YRL+R+VKNRFGST+ELGVFEM LGL + NPSKI +SE+ D
Sbjct: 229 HMVDTVLYFEGERYNTYRLVRAVKNRFGSTNELGVFEMRDLGLVELDNPSKILISEKPKD 288
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVLMKQAGL 470
+AG + ++G+R L+E+QAL S R G+ +R M+++VL K+ GL
Sbjct: 289 ---VAGSVIISTVEGTRPMLLELQALVSPTSFGIPKRTSTGVDYNRVGMLLAVLEKRVGL 345
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
++Q +++N+V G+ + E + DL +A ++ SSF PI IA GE+GL GE+R VS
Sbjct: 346 QIQNQDVYINIVGGIKINEPSIDLGIAISVASSFRNIPIDEDIAVTGEVGLTGEVRAVSF 405
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+EKR++ KLG++K +VP+S + + +E NL++ IN+V
Sbjct: 406 IEKRIAECKKLGFKKIVVPRSNYDVVKET--KGIEMWPVDNLRQAINIVL 453
>gi|423228749|ref|ZP_17215155.1| DNA repair protein RadA [Bacteroides dorei CL02T00C15]
gi|423247560|ref|ZP_17228609.1| DNA repair protein RadA [Bacteroides dorei CL02T12C06]
gi|392631890|gb|EIY25857.1| DNA repair protein RadA [Bacteroides dorei CL02T12C06]
gi|392635488|gb|EIY29387.1| DNA repair protein RadA [Bacteroides dorei CL02T00C15]
Length = 455
Score = 349 bits (895), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 189/470 (40%), Positives = 286/470 (60%), Gaps = 22/470 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T +VC++CG +W G C +C G Y + PV +R +P + +PV L
Sbjct: 5 KTVYVCTNCGQDSPKWVGKCPSC---GAWNTYVEEVVRKEPVNKRPVSGLEPVKSKPVTL 61
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
++ G + P + E+ RVLGGGLVPGSLVL+GG+PG+GKSTL+LQ +
Sbjct: 62 NDITGGDE------PRIDMQDEELNRVLGGGLVPGSLVLLGGEPGIGKSTLVLQTVLHLP 115
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
D V+Y+SGEES Q+ RADR+ + + + T +E I ++ P +
Sbjct: 116 D-------RKVLYISGEESARQLKLRADRIPHNSSDCLIVCETSLEQIYIHIKNTQPDLV 168
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQT+ + S G L+QV+EC++++L+FAK+TN PV+L GH+ K G IAGP+VLE
Sbjct: 169 IIDSIQTISTETIDSSPGSLVQVRECSASILKFAKETNTPVILIGHINKEGSIAGPKVLE 228
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
HIVD VL EG++ YR+LRS+KNRFGST ELG++EM Q GL+ VSNPS++ LS+ H
Sbjct: 229 HIVDTVLQFEGDQHYMYRILRSIKNRFGSTAELGIYEMRQNGLRQVSNPSELLLSQDH-- 286
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
+ ++G+A+A ++G R FLIE QAL S R G R +M+++VL K+ G
Sbjct: 287 -DGMSGVAIASAIEGVRPFLIETQALVSSAVYGNPQRSATGFDLRRMNMLLAVLEKRVGF 345
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
KL + +FLN+ G+ + + A DL+V +AI SS ++ + GE+GL GE+R V+R
Sbjct: 346 KLAQKDVFLNIAGGLKVNDPAIDLSVISAILSSNMDTEVERDTCMAGEVGLSGEIRPVNR 405
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+E+R+ KLG+++ ++PK + + T ++E I + ++E +F
Sbjct: 406 IEQRIGEAEKLGFKRILIPKHNLQGMDTSKL-KIEIIPVRKVEEAFRALF 454
>gi|294508530|ref|YP_003572589.1| DNA repair protein RadA-like protein [Salinibacter ruber M8]
gi|294344859|emb|CBH25637.1| DNA repair protein radA homolog [Salinibacter ruber M8]
Length = 531
Score = 349 bits (895), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 193/471 (40%), Positives = 285/471 (60%), Gaps = 25/471 (5%)
Query: 116 WVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQK---PEEVQPVRL 172
+VC +CG+ +W G C C + T+ + + E V + Q + QP +L
Sbjct: 80 YVCQECGHEAHKWMGKCTGCGAWNTLVKETESADVEAQVPDLSTDGQNGTAAAQNQPTQL 139
Query: 173 LEVN-KGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAII 231
+V +G +L + +E+ RV+GGG++ GS LI GDPG+GKSTL+ ++ +
Sbjct: 140 TDVEMEGESRLKTGV-------DELDRVMGGGIMQGSFSLIAGDPGIGKSTLMTELGGYL 192
Query: 232 ADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRA 291
++YV+GEES Q+ RA R+ + ++ L+L + T++++I V ++P
Sbjct: 193 PG-------RKILYVTGEESKRQVKLRAQRLGVDSDALYLLAETNVQEIANAVDDVAPDL 245
Query: 292 LIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVL 351
L+ DSIQT+Y + + G + QV+E T++LL+ K+ L GHVTK G IAGPRVL
Sbjct: 246 LVADSIQTIYRPDLTSAPGSVSQVRESTASLLKLTKEREFSTFLVGHVTKKGTIAGPRVL 305
Query: 352 EHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHS 411
EH+VD VLY EG++ +YR+LRSVKNRFG+ +E+GVFEM + GL+ V NPS+IFLSE+
Sbjct: 306 EHMVDTVLYFEGDQNHAYRILRSVKNRFGAANEIGVFEMREDGLREVPNPSEIFLSER-- 363
Query: 412 DSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVLMKQAG 469
++G V ++G+R L+EIQAL S ST R V G A R MI++VL K+AG
Sbjct: 364 -GYGVSGSTVVCSLEGTRPILVEIQALVTPTSYSTPQRTVTGFAAQRLQMILAVLEKRAG 422
Query: 470 LKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVS 529
L ++ +F+NV GV L E A DL VA A SSF + P G A IGE+GLGGE+R VS
Sbjct: 423 LAFSDHDVFINVAGGVKLEEPAVDLGVAIAAASSFRDIPADTGSALIGEVGLGGEIRTVS 482
Query: 530 RMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
R+E R+ AKLG+ + +VP++ +A G ++ G + LKEV++VV
Sbjct: 483 RVEPRLKEAAKLGFDRAVVPENNLDRIA--GDYDIDVTGAQQLKEVVDVVL 531
>gi|255654111|ref|ZP_05399520.1| DNA repair protein RadA [Clostridium difficile QCD-23m63]
gi|296449850|ref|ZP_06891617.1| DNA repair protein RadA [Clostridium difficile NAP08]
gi|296877914|ref|ZP_06901934.1| DNA repair protein RadA [Clostridium difficile NAP07]
gi|296261337|gb|EFH08165.1| DNA repair protein RadA [Clostridium difficile NAP08]
gi|296431111|gb|EFH16938.1| DNA repair protein RadA [Clostridium difficile NAP07]
Length = 457
Score = 349 bits (895), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 186/470 (39%), Positives = 287/470 (61%), Gaps = 23/470 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T +VC CGY +W G C C T +S + V KP + +
Sbjct: 5 KTKYVCQSCGYETAKWLGKCPECTKWNTFVEEIDQKSTKKEVFIIDKSSSKPVTINSIES 64
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
E + + NE+ RVLGGG+V GSLVL+GGDPG+GKSTLL+Q+++
Sbjct: 65 KEEERFTTDI-----------NELDRVLGGGIVKGSLVLVGGDPGIGKSTLLIQVSS--- 110
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+V +LG+ V+Y++GEES QI RA R+ I +E L++++ ++ I ++ ++P +
Sbjct: 111 NVANLGKT--VLYITGEESESQIKMRAKRLGINSENLYIFAENNLSIIESYLEVVNPELI 168
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
I+DSIQTV+ ++ + G + Q+KE TS ++ +KK I + GHVTK G +AGP++LE
Sbjct: 169 ILDSIQTVFSPEISSAPGTVSQIKEGTSKFMKISKKMGISTFIVGHVTKEGSLAGPKLLE 228
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EGE++++YRL+R+VKNRFGST+ELGVFEM LGL + NPSKI +SE+ D
Sbjct: 229 HMVDTVLYFEGERYNTYRLVRAVKNRFGSTNELGVFEMRDLGLVELDNPSKILISEKPKD 288
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVLMKQAGL 470
+AG + ++G+R L+E+QAL S R G+ +R M+++VL K+ GL
Sbjct: 289 ---VAGSVIISTVEGTRPMLLELQALVSPTSFGIPKRTSTGVDYNRVGMLLAVLEKRVGL 345
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
++Q +++N+V G+ + E + DL +A ++ SSF PI IA GE+GL GE+R VS
Sbjct: 346 QIQNQDVYINIVGGIKINEPSIDLGIAISVASSFRNIPIDEDIAVTGEVGLTGEVRAVSF 405
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+EKR++ KLG++K +VP+S + + +E NL++ IN+V
Sbjct: 406 IEKRIAECKKLGFKKIVVPRSNYDVIKDT--KGIEIWPVDNLRQAINIVL 453
>gi|126662929|ref|ZP_01733927.1| DNA repair protein [Flavobacteria bacterium BAL38]
gi|126624587|gb|EAZ95277.1| DNA repair protein [Flavobacteria bacterium BAL38]
Length = 453
Score = 349 bits (895), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 192/452 (42%), Positives = 278/452 (61%), Gaps = 21/452 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T + C +CG +W G C AC+ T+ E V +T +P+ +
Sbjct: 5 KTAFFCQNCGTQYSKWQGQCNACKEWNTIVEELV--QKEEKVAWKTTTATSKAATKPLLI 62
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
E++ + R+ + NE+ RVLGGGLVPGSL L+GG+PG+GKSTLLLQ+A
Sbjct: 63 KEIDTAQ---EIRLNTTD---NELNRVLGGGLVPGSLTLLGGEPGIGKSTLLLQIA---- 112
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
L P +YVSGEES +QI RA+R+ + ++ + T ++I ++ + P +
Sbjct: 113 ----LKLPYKTLYVSGEESQKQIKMRAERITSNGDNCYILTETKTQNIFRQILEIQPDIV 168
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQT++ + SAG + Q++ECT+ L+++AK++N+PVLL GH+TK G IAGP++LE
Sbjct: 169 IIDSIQTLHTDYIESSAGSISQIRECTAELIKYAKESNVPVLLIGHITKDGTIAGPKILE 228
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VL EG++ YR+LRS+KNRFGST ELG++EM GL+ V NPS+I +S H D
Sbjct: 229 HMVDTVLQFEGDRNHVYRILRSLKNRFGSTAELGIYEMQGSGLREVDNPSEILIS--HKD 286
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
E L+G A+A ++G R +IEIQAL + T R G A R +MI++VL K+AG
Sbjct: 287 -EQLSGTAIATTLEGMRPLMIEIQALVSTAVYGTPQRSTTGYNAKRLNMILAVLEKRAGF 345
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
+L +FLNV G+++ +TA DLAV AAI SS + I G F GE+GL GE+R V+R
Sbjct: 346 RLGTKDVFLNVTGGISVEDTAIDLAVVAAILSSNEDIAITEGFCFAGEVGLSGEIRPVNR 405
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFE 562
+E+R+ KLG+ V K + SL G +
Sbjct: 406 IEQRIQEAEKLGFTTIFVSKHNKISLKNTGIK 437
>gi|418006049|ref|ZP_12646017.1| DNA repair protein [Lactobacillus casei UW1]
gi|418008866|ref|ZP_12648715.1| DNA repair protein [Lactobacillus casei UW4]
gi|410544866|gb|EKQ19178.1| DNA repair protein [Lactobacillus casei UW1]
gi|410545464|gb|EKQ19758.1| DNA repair protein [Lactobacillus casei UW4]
Length = 454
Score = 349 bits (895), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 194/470 (41%), Positives = 281/470 (59%), Gaps = 23/470 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T +VC +CGY + G C C T+ + S P T KP + V +
Sbjct: 5 KTQYVCQNCGYISATYLGRCPNCGGWNTLVEETVSSSKSVPRQTATGSKVKPTRMNDVTI 64
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
+ + LD E+ RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ +A
Sbjct: 65 TKETRVKTGLD-----------ELNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSGQLA 113
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+ V+YVSGEES QI RA R+ +A ++LY TD+ I + + + P +
Sbjct: 114 NTG-----GTVLYVSGEESASQIKMRAGRLGVANSGMYLYPETDMPSIEDVINQMQPDYV 168
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
+IDS+QT+ + + + G + Q++E T+ L+R AK + + + GHVTK G IAGP++LE
Sbjct: 169 VIDSVQTMNVPEMNSAVGSVAQIREVTAELMRIAKSKGVTIFIVGHVTKEGAIAGPKILE 228
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EG+ +YR+LRSVKNRFGST+E+G+FEM Q GLQ V+NPS+IFL E+ +
Sbjct: 229 HMVDTVLYFEGDMHHTYRILRSVKNRFGSTNEIGIFEMHQDGLQEVANPSEIFLEERLAG 288
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVLMKQAGL 470
+ G AV V M+G+R L+EIQAL R +G+ +R +I++VL K+A L
Sbjct: 289 A---TGSAVVVSMEGTRPILVEIQALISPTMYGNAKRTSSGLDHNRVSLIMAVLEKRANL 345
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ +L GV L E A DLA+A AI SS+ + I F+GEIGL GE+R V+R
Sbjct: 346 MLQNQDAYLKATGGVKLDEPAIDLAMAVAIASSYRDKEISPTDCFVGEIGLTGEVRRVNR 405
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+E+RV AKLG+++ VP++ + + ++ IG ++ E ++ VF
Sbjct: 406 IEERVKEAAKLGFKRIFVPRNNLQGWH--APKDIQVIGVTSIAEALHKVF 453
>gi|347537757|ref|YP_004845182.1| DNA repair protein RadA [Flavobacterium branchiophilum FL-15]
gi|345530915|emb|CCB70945.1| DNA repair protein RadA [Flavobacterium branchiophilum FL-15]
Length = 453
Score = 348 bits (894), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 184/444 (41%), Positives = 278/444 (62%), Gaps = 29/444 (6%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQR----TWLPQKPEEVQ 168
+T + C CG +W G C AC+ T+ ++Q+ W PE V+
Sbjct: 5 KTAFYCQSCGNQYSKWQGQCNACKEWNTIVE---------EIIQKETKVAWKMASPEIVK 55
Query: 169 PVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMA 228
+ L +N+ + R+ + E+ RVLGGG+VPGSL+L+GG+PG+GKSTLLLQ++
Sbjct: 56 ASKPLRINEIDATQEVRMNTTD---EELNRVLGGGIVPGSLILLGGEPGIGKSTLLLQIS 112
Query: 229 AIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLS 288
L P +YVSGEES +QI RA+R+ + E F+ + T ++I ++++ ++
Sbjct: 113 --------LKLPYKTLYVSGEESQKQIKMRAERITHSGENCFILTETKTQNIFKQIENIA 164
Query: 289 PRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGP 348
P +IIDSIQT++ + S G + Q++ECT+ L++FAK+TN+PV+L GH+TK G IAGP
Sbjct: 165 PEIVIIDSIQTLHTEYIESSPGSISQIRECTAELIKFAKETNVPVILIGHITKDGSIAGP 224
Query: 349 RVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSE 408
++LEH+VD VL EG++ YR+LRS+KNRFGST ELG++EM GL+ V+NPS+I +S
Sbjct: 225 KILEHMVDTVLQFEGDRNHVYRILRSLKNRFGSTAELGIYEMMGSGLREVTNPSEILISH 284
Query: 409 QHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMK 466
++ E L+G A+A ++G R +IEIQAL + T R G A R +MI++VL K
Sbjct: 285 KN---EELSGTAIASTLEGMRPLMIEIQALVSTAVYGTPQRSTTGYNAKRLNMILAVLEK 341
Query: 467 QAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELR 526
+AG +L +FLNV G+++ + A DL+V AAI SS + P+ F GE+GL GE+R
Sbjct: 342 RAGFRLGAKDVFLNVTGGISIDDPALDLSVVAAILSSNEDIPVGKDFCFAGEVGLSGEIR 401
Query: 527 MVSRMEKRVSTVAKLGYRKCIVPK 550
V+R+++R+ KLG+ V K
Sbjct: 402 PVNRVDQRIQEAEKLGFSTIFVSK 425
>gi|313676217|ref|YP_004054213.1| DNA repair protein rada [Marivirga tractuosa DSM 4126]
gi|312942915|gb|ADR22105.1| DNA repair protein RadA [Marivirga tractuosa DSM 4126]
Length = 454
Score = 348 bits (894), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 194/471 (41%), Positives = 287/471 (60%), Gaps = 25/471 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGT-MKRYSAGESDEGPVVQRTWLPQKPEEVQPVR 171
++ + C +CG+ +W G C +C T ++ E + KP +Q V
Sbjct: 5 KSAYFCQECGHESPKWAGKCPSCGQWNTFVEEVITKEQSSSGYQSSSKRANKPVAIQEVE 64
Query: 172 LLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAII 231
+ RI ++ E++RVLGGG+VPGSLVLIGG+PG+GKSTL+LQ+A +
Sbjct: 65 --------STSEARIKVAD---RELSRVLGGGIVPGSLVLIGGEPGIGKSTLMLQIALQL 113
Query: 232 ADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRA 291
+++ V+YVSGEES +QI RADRM ++ F+ + T DI +V+ L P
Sbjct: 114 SNLK-------VLYVSGEESAQQIKMRADRMEHDSKNCFILTETHTADIFREVEALGPDL 166
Query: 292 LIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVL 351
L+IDSIQT++ + +AG + QVKECT+ L+RFAK+ IPV L GH+TK G IAGP+VL
Sbjct: 167 LVIDSIQTLHSPKIESAAGSVGQVKECTAELMRFAKENKIPVFLIGHITKDGAIAGPKVL 226
Query: 352 EHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHS 411
EH+VDAVL EG++ +YR+LR+ KNRFGST+ELG++EM Q GL+ VSNPS+I +S++
Sbjct: 227 EHMVDAVLQFEGDRHLTYRILRTTKNRFGSTNELGIYEMMQNGLRQVSNPSEILISQKDK 286
Query: 412 DSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMKQAG 469
+S +G A+ ++G+R LIEIQAL + T R G R +M+++VL K+ G
Sbjct: 287 NS---SGTAIGATLEGNRPLLIEIQALVSPATYGTPQRSATGYDNKRLNMLLAVLEKRGG 343
Query: 470 LKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVS 529
+L +FLN+ GV + + A DLAV AI SS E P+ + E+GL GE+R V+
Sbjct: 344 FRLGIQDVFLNIAGGVRVEDPAIDLAVCVAIISSLEEIPLSSKTCVAAEVGLSGEIRAVN 403
Query: 530 RMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
R+E R++ KLG+ + +V K + K + T + +E L EV++ +F
Sbjct: 404 RIENRIAEAEKLGFTEILVSKFSMKGVDTSRY-SIEIKTFSQLSEVVSYLF 453
>gi|157150256|ref|YP_001449492.1| DNA repair protein RadA [Streptococcus gordonii str. Challis
substr. CH1]
gi|157075050|gb|ABV09733.1| DNA repair protein RadA [Streptococcus gordonii str. Challis
substr. CH1]
Length = 466
Score = 348 bits (894), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 195/471 (41%), Positives = 280/471 (59%), Gaps = 24/471 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T +VC +C Y ++ G C C + + + V T +P ++ V
Sbjct: 18 KTTFVCQNCEYHSPKYLGRCPNCGAWSSFVEEVEAAEVKHARVSLTGEKTRPMKLAEVTS 77
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
++VN+ ++D E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++
Sbjct: 78 IDVNRTKTEMD-----------EFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVST--- 123
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
L V+YVSGEES EQI RA+R+ E +LY+ T++++I +++ + P L
Sbjct: 124 ---QLSHQGTVLYVSGEESAEQIKLRAERLGDIDSEFYLYAETNMQNIRTEIEKIKPDFL 180
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQTV ++ G + QV+E T+ L++ AK NI + GH+TK G +AGPR LE
Sbjct: 181 IIDSIQTVMSPEISSVQGSVSQVREVTAELMQLAKTNNIATFIVGHMTKEGTLAGPRTLE 240
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS++FL E+
Sbjct: 241 HMVDTVLYFEGERQHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVVNPSEVFLEERLDG 300
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
+ G ++ V M+G+R L E+QAL R G+ +RA +I++VL K+AGL
Sbjct: 301 A---TGSSIVVTMEGTRPILAEVQALVTPTMFGNAKRTTTGLDFNRASLIMAVLEKRAGL 357
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ +L GV L E A DLAVA AI SS+ + P FIGEIGL GE+R V+R
Sbjct: 358 LLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDLPTNPQECFIGEIGLTGEIRRVNR 417
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVFT 581
+E+R++ AKLG+ K PK++ L + ++ IG + EV+ VF+
Sbjct: 418 IEQRINEAAKLGFTKVYAPKNSLNGLKVP--DNIQVIGVTTIGEVLKKVFS 466
>gi|374674156|dbj|BAL52047.1| DNA repair protein [Lactococcus lactis subsp. lactis IO-1]
Length = 453
Score = 348 bits (894), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 194/471 (41%), Positives = 281/471 (59%), Gaps = 26/471 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+++++C +CGY ++ G C C + + + V T KP ++ V L
Sbjct: 5 KSSFICQNCGYKSAKYLGRCPNCGEWSSFVEEVEVQEVKNQRVSMTGERSKPLKLDEVEL 64
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
+ + LD E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++
Sbjct: 65 FDTPRIETDLD-----------EFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVST--- 110
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
L V+YVSGEES +QI RA+R+ + +LY+ T+++ I +V+ L P L
Sbjct: 111 ---QLASRGRVLYVSGEESAQQIKLRAERLGDIDRDFYLYAETNMQSIRAEVERLKPNFL 167
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQT+ + + G + QV+E T L++ AK +I + GHVTK G +AGPR+LE
Sbjct: 168 IIDSIQTIMTPEIQSTQGSVSQVREVTGELMQIAKTNDIATFIVGHVTKEGQLAGPRMLE 227
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EGE+ +++R+LR+VKNRFGST+E+G+FEM GL V+NPS++FL E+
Sbjct: 228 HMVDTVLYFEGERNNTFRILRAVKNRFGSTNEIGIFEMQGHGLVEVTNPSEVFLEERLEG 287
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
S G A+ ++G+R L+EIQAL R +G+ +R +I++VL K+ GL
Sbjct: 288 S---TGSAIVCALEGTRPILVEIQALTTPTMFGNAKRTTSGLDFNRVSLIMAVLEKRTGL 344
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
+Q +L GV L E A DLAVA A+ SS+ E P FIGEIGL GE+R V+R
Sbjct: 345 LMQNQDAYLKSAGGVKLDEPAIDLAVAVAVASSYKELPTDARECFIGEIGLTGEIRRVTR 404
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGF-EQMEFIGCKNLKEVINVVF 580
+E+R++ AKLG++K PK+ S+ + EQ++ IG L E + +VF
Sbjct: 405 IEQRLNEAAKLGFKKVYAPKN---SIVGIDIPEQIQVIGVTTLTECLKLVF 452
>gi|406658725|ref|ZP_11066865.1| DNA repair protein RadA [Streptococcus iniae 9117]
gi|405578940|gb|EKB53054.1| DNA repair protein RadA [Streptococcus iniae 9117]
Length = 454
Score = 348 bits (894), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 195/471 (41%), Positives = 284/471 (60%), Gaps = 24/471 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T ++C +CGY ++ G C C + + E E V+ + E+ +PV+L
Sbjct: 5 KTQFICQECGYQSPKYLGRCPNCSAWSSFV-----EEIEVKEVKNARVSLTGEKSKPVKL 59
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
+V+ + + +E RVLGGG+VPGSL+LIGGDPG+GKSTLLLQ++
Sbjct: 60 KDVD------NIHYARTKTDMDEFNRVLGGGVVPGSLILIGGDPGIGKSTLLLQVST--- 110
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
L V+YVSGEES EQI R++R+ E +LY+ T+++ + +++ L P L
Sbjct: 111 ---QLAAKGTVLYVSGEESAEQIKLRSERLGDVDNEFYLYAETNMQQVRAEIEKLQPDFL 167
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQT+ + G G + QV+E T+ L++ AK NI + GHVTK G IAGPR+LE
Sbjct: 168 IIDSIQTMMSPDITGVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTIAGPRMLE 227
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS++FL E+
Sbjct: 228 HMVDTVLYFEGERHHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDG 287
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
+ G A+ V M+GSR L E+Q+L R G+ +R +I++VL K+ GL
Sbjct: 288 A---TGSAIVVTMEGSRPILAEVQSLVTPTVFGNARRTTTGLDFNRVSLIMAVLEKRCGL 344
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ +L GV L E A DLAVA AI SS+ E P AF+GEIGL GE+R V+R
Sbjct: 345 LLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTNPQEAFLGEIGLTGEIRRVTR 404
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVFT 581
+E+R++ AKLG+ K PK++ + ++ + +E IG + +V+ VF+
Sbjct: 405 IEQRINEAAKLGFTKLYAPKNSLQGISVP--KGIEVIGVSTVGQVLKAVFS 453
>gi|415886307|ref|ZP_11548130.1| DNA repair protein RadA [Bacillus methanolicus MGA3]
gi|387588960|gb|EIJ81281.1| DNA repair protein RadA [Bacillus methanolicus MGA3]
Length = 459
Score = 348 bits (894), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 199/485 (41%), Positives = 288/485 (59%), Gaps = 49/485 (10%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRAC----------ESVGTMKR----YSAGESDEGPVVQRT 158
+T ++C CGY +W G C C E T +R YS G S
Sbjct: 5 KTKFICQKCGYESPKWMGKCPGCGEWNKMVEEVEPASTGRRGAFAYSVGTSSS------- 57
Query: 159 WLPQKPEEVQPVRLLE-VNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPG 217
+ P+ +E +++ Q D NE RVLG G+V GSLVLIGGDPG
Sbjct: 58 ------SKATPITSIETLSEPRIQTDL---------NEFNRVLGSGIVRGSLVLIGGDPG 102
Query: 218 VGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDI 277
+GKSTLLLQ+++ +A + V+YVSGEES+ Q+ RADR+ +++E L +YS T++
Sbjct: 103 IGKSTLLLQVSSQLA-----AKSYQVLYVSGEESLRQLKLRADRLGVSSENLLVYSETNL 157
Query: 278 EDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAG 337
E+I + ++ +SP +I+DSIQTV+ + + G + Q++ECT+ L+R AK I + + G
Sbjct: 158 EEISKTIENVSPSFVIVDSIQTVFHPEITSAPGSVSQIRECTAELMRIAKSKGIAIFIVG 217
Query: 338 HVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQA 397
HVTK G IAGPR+LEH+VD VLY EGE+ +YR+LR+VKNRFGST+E+G+FEM + GL+
Sbjct: 218 HVTKEGSIAGPRILEHMVDTVLYFEGERHHTYRILRAVKNRFGSTNEMGIFEMKEFGLEE 277
Query: 398 VSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQAS 455
V NPS+IFL E+ S+ AG V M+G+R L+EIQAL S R GI +
Sbjct: 278 VENPSEIFLEER---SQGAAGSTVVASMEGTRPVLVEIQALISPSSFGIPRRMATGIDHN 334
Query: 456 RADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAF 515
R ++++VL K+ G+ LQ +L V G+ L E A DLA+A +I SSF P
Sbjct: 335 RVPLLMAVLEKRVGMLLQNQDAYLKVAGGIKLDEPAIDLAIAISIASSFRGKPTRPTDCI 394
Query: 516 IGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEV 575
IGE+GL GE+R VSR+E+RV AKLG+ + I+P++ G + +E +G ++ +
Sbjct: 395 IGEVGLTGEVRRVSRIEQRVQEAAKLGFERVILPQNNLGGWQ--GPKGIELVGVSSVSQA 452
Query: 576 INVVF 580
+ V
Sbjct: 453 LQVTL 457
>gi|257866297|ref|ZP_05645950.1| DNA repair protein RadA [Enterococcus casseliflavus EC30]
gi|257873187|ref|ZP_05652840.1| DNA repair protein RadA [Enterococcus casseliflavus EC10]
gi|257875916|ref|ZP_05655569.1| DNA repair protein RadA [Enterococcus casseliflavus EC20]
gi|325567619|ref|ZP_08144286.1| DNA repair protein RadA [Enterococcus casseliflavus ATCC 12755]
gi|420261777|ref|ZP_14764421.1| DNA repair protein RadA [Enterococcus sp. C1]
gi|257800255|gb|EEV29283.1| DNA repair protein RadA [Enterococcus casseliflavus EC30]
gi|257807351|gb|EEV36173.1| DNA repair protein RadA [Enterococcus casseliflavus EC10]
gi|257810082|gb|EEV38902.1| DNA repair protein RadA [Enterococcus casseliflavus EC20]
gi|325159052|gb|EGC71198.1| DNA repair protein RadA [Enterococcus casseliflavus ATCC 12755]
gi|394771711|gb|EJF51472.1| DNA repair protein RadA [Enterococcus sp. C1]
Length = 456
Score = 348 bits (894), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 197/444 (44%), Positives = 275/444 (61%), Gaps = 20/444 (4%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQP 169
K ++ +VC +CGY+ ++ G C C S +M E+ + V RT L +++QP
Sbjct: 3 KKAKSQFVCQNCGYSSPKYLGKCPNCGSWNSMVEEVIQETADRRV--RTTL--TGQKMQP 58
Query: 170 VRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAA 229
++ +V + + P E+ RVLGGG+VPGSL+LIGGDPG+GKSTLLLQ++
Sbjct: 59 TKIADV------VPKKEPRVQTKLAELNRVLGGGVVPGSLILIGGDPGIGKSTLLLQVSQ 112
Query: 230 IIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSP 289
+A + V+YVSGEES EQI RA R+ E +LY TD+ +I + ++ + P
Sbjct: 113 QLAAIG-----GTVLYVSGEESAEQIKMRAQRLGAIDTEFYLYGETDMSEISKAIENIRP 167
Query: 290 RALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPR 349
+IIDSIQT+ + AG + QV+E T+ LL+ AK I + + GHVTK G IAGPR
Sbjct: 168 DYVIIDSIQTMTQPDITSVAGSVSQVRETTAELLKIAKTNGIAIFIVGHVTKEGSIAGPR 227
Query: 350 VLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQ 409
+LEH+VD VLY EGEK S+R+LR+VKNRFGST+E+G+FEM + GL+ V+NPS++FL E+
Sbjct: 228 MLEHMVDTVLYFEGEKHHSFRILRAVKNRFGSTNEIGIFEMEEGGLKEVANPSQVFLEER 287
Query: 410 HSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQ 467
E G A+ V M+GSR L+EIQAL R G+ +R +I++VL K+
Sbjct: 288 L---EGATGSAIVVAMEGSRPILVEIQALVTPTMFGNAKRTTTGLDFNRVSLIMAVLEKR 344
Query: 468 AGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRM 527
AGL LQ +L GV L E A DLA+A +I SS+ E FIGEIGL GE+R
Sbjct: 345 AGLLLQNQDAYLKAAGGVKLNEPAIDLAIAVSIASSYKEKGTSPTECFIGEIGLTGEIRR 404
Query: 528 VSRMEKRVSTVAKLGYRKCIVPKS 551
V+ +E+RV V KLG+ K +PK+
Sbjct: 405 VNAIEQRVKEVQKLGFTKVYLPKN 428
>gi|229917385|ref|YP_002886031.1| DNA repair protein RadA [Exiguobacterium sp. AT1b]
gi|229468814|gb|ACQ70586.1| DNA repair protein RadA [Exiguobacterium sp. AT1b]
Length = 458
Score = 348 bits (894), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 193/443 (43%), Positives = 279/443 (62%), Gaps = 22/443 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQR--TWLPQKPEEVQPV 170
+T +VC CGY +W G C C T+ E E +R ++ +++P
Sbjct: 5 KTKYVCQSCGYESAKWMGRCPGCNEWNTL----VEEFVEEKKAKRGAAFVHSSSRQLKPE 60
Query: 171 RLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAI 230
RL V + Q + R+ + E RVLGGG+VPGSLVL+GGDPG+GKST+LLQ++A
Sbjct: 61 RLANV---VSQEETRVHTNS---REFDRVLGGGIVPGSLVLVGGDPGIGKSTILLQVSAH 114
Query: 231 IADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPR 290
+A V+Y+SGEES++Q RA+R+ + T++LF+ + TD+ I + P
Sbjct: 115 LAH-----SGKKVLYISGEESLKQTKLRAERLGLPTDDLFVLAETDMLMIERVIDEEQPG 169
Query: 291 ALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRV 350
+IIDSIQTVY+ + + G + QV+ECT+AL++ AK I V + GHVTK G IAGPR+
Sbjct: 170 FVIIDSIQTVYMDEIQSAPGSVSQVRECTAALMKIAKTRGIAVFIVGHVTKQGSIAGPRL 229
Query: 351 LEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQH 410
LEH+VDAVLY EGE+ ++R+LR+VKNRFGST+E+G+FEM + GL+ V NPS+IFL E+
Sbjct: 230 LEHMVDAVLYFEGERHHTFRILRAVKNRFGSTNEIGIFEMKESGLEEVLNPSEIFLEERT 289
Query: 411 SDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVLMKQA 468
+ ++G V M+G+R+ L+E+QAL S R GI +R ++++VL K++
Sbjct: 290 AG---VSGSTVVASMEGTRTVLVELQALISPTSFGNPRRMATGIDQNRVALLMAVLEKRS 346
Query: 469 GLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMV 528
GL LQ +L GV L E A DLA+ +I SSF + P IGE+GL GE+R V
Sbjct: 347 GLLLQTQDAYLKAAGGVKLDEPAIDLAICISIASSFRDRPTRPTDVCIGEVGLTGEVRRV 406
Query: 529 SRMEKRVSTVAKLGYRKCIVPKS 551
SR+E+RV+ AKLG+ + I+PK+
Sbjct: 407 SRIEQRVAEAAKLGFTRAIIPKN 429
>gi|335356907|ref|ZP_08548777.1| DNA repair protein RadA [Lactobacillus animalis KCTC 3501]
Length = 456
Score = 348 bits (894), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 191/470 (40%), Positives = 280/470 (59%), Gaps = 20/470 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T +VC +CGY ++ G C C T+ +S R L Q +
Sbjct: 5 KTRYVCQNCGYVSPRYLGRCPNCSEWNTLVEEVEQKSATVKAAPRVTLTGTTNTPQKIDT 64
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
+E+++ P E+ RVLGGG+VPGS+VLIGGDPG+GKSTLLLQ++ +A
Sbjct: 65 IEISQ--------TPRVDTKNGELNRVLGGGVVPGSMVLIGGDPGIGKSTLLLQVSGSLA 116
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
D + ++YVSGEES QI RA R+ ++ E +LY TD+ I++ ++ L P +
Sbjct: 117 D-----QGGKLLYVSGEESANQIKMRAQRLGVSGSEFYLYPETDMGSILQNIEDLKPDYV 171
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDS+QT+ + V + G + Q++E T+AL++ AK I + + GHVTK G IAGP++LE
Sbjct: 172 IIDSVQTMQMPEVTSAVGSVAQIREVTAALMQIAKTNGITIFIVGHVTKGGAIAGPKILE 231
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EG+ +YR+LR+VKNRFGST+E+GVFEM GL V NPS+IFL E+ S
Sbjct: 232 HMVDTVLYFEGDMHRTYRILRAVKNRFGSTNEIGVFEMRDGGLVEVPNPSEIFLEERLSG 291
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMKQAGL 470
+ G AV V M+G+R L EIQAL + R G+ +R +I++VL K+AGL
Sbjct: 292 A---TGSAVVVSMEGTRPILAEIQALVTPTAFGNAKRTTTGLDHNRVSLIMAVLEKRAGL 348
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ +L GV L E A DLA+A ++ SS+ + FIGE+GL GE+R V+R
Sbjct: 349 LLQNQDAYLKAAGGVKLDEPAIDLAIAMSLVSSYRDQQTAPDDCFIGELGLTGEIRRVTR 408
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+++R+S AKLG+++ +P++ L ++ +G K + E + VF
Sbjct: 409 IDQRISEAAKLGFKRVFIPQNNLNGLELP--TNIDVVGVKTISEALRHVF 456
>gi|191639267|ref|YP_001988433.1| DNA repair protein RadA [Lactobacillus casei BL23]
gi|385821021|ref|YP_005857408.1| DNA repair protein RadA [Lactobacillus casei LC2W]
gi|385824204|ref|YP_005860546.1| DNA repair protein RadA [Lactobacillus casei BD-II]
gi|409998128|ref|YP_006752529.1| DNA repair protein RadA [Lactobacillus casei W56]
gi|190713569|emb|CAQ67575.1| DNA repair protein RadA [Lactobacillus casei BL23]
gi|327383348|gb|AEA54824.1| DNA repair protein RadA [Lactobacillus casei LC2W]
gi|327386531|gb|AEA58005.1| DNA repair protein RadA [Lactobacillus casei BD-II]
gi|406359140|emb|CCK23410.1| DNA repair protein RadA homolog [Lactobacillus casei W56]
Length = 454
Score = 348 bits (894), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 194/470 (41%), Positives = 280/470 (59%), Gaps = 23/470 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T +VC +CGY + G C C T+ + S P KP + V +
Sbjct: 5 KTQYVCQNCGYISATYLGRCPNCGGWNTLVEETVSSSKSVPRQTAAGSKVKPTRMNDVTI 64
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
+ + LD E+ RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ +A
Sbjct: 65 TKETRVKTGLD-----------ELNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSGQLA 113
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
D V+YVSGEES QI RA R+ +A ++LY TD+ I + + + P +
Sbjct: 114 DTG-----GTVLYVSGEESASQIKMRAGRLGVANSGMYLYPETDMPSIEDVINQMQPDYV 168
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
+IDS+QT+ + + + G + Q++E T+ L+R AK + + + GHVTK G IAGP++LE
Sbjct: 169 VIDSVQTMNVPEMNSAVGSVAQIREVTAELMRIAKSKGVTIFIVGHVTKEGAIAGPKILE 228
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EG+ +YR+LRSVKNRFGST+E+G+FEM Q GLQ V+NPS+IFL E+ +
Sbjct: 229 HMVDTVLYFEGDMHHTYRILRSVKNRFGSTNEIGIFEMHQDGLQEVANPSEIFLEERLAG 288
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVLMKQAGL 470
+ G AV V M+G+R L+EIQAL R +G+ +R +I++VL K+A L
Sbjct: 289 A---TGSAVVVSMEGTRPILVEIQALISPTMYGNAKRTSSGLDHNRVSLIMAVLEKRANL 345
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ +L GV L E A DLA+A AI SS+ + I F+GEIGL GE+R V+R
Sbjct: 346 MLQNQDAYLKATGGVKLDEPAIDLAMAVAIASSYRDKEISPTDCFVGEIGLTGEVRRVNR 405
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+E+RV AKLG+++ VP++ + + ++ IG ++ E ++ VF
Sbjct: 406 IEERVKEAAKLGFKRIFVPRNNLQGWHAP--KDIQVIGVTSIAEALHKVF 453
>gi|340617406|ref|YP_004735859.1| DNA repair protein [Zobellia galactanivorans]
gi|339732203|emb|CAZ95471.1| DNA repair protein [Zobellia galactanivorans]
Length = 453
Score = 348 bits (894), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 189/452 (41%), Positives = 277/452 (61%), Gaps = 21/452 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T + C +CG +W G C AC+ T+ + + + +W + +
Sbjct: 5 KTAFFCQNCGTQYAKWVGQCSACKEWNTVVEEVIQKEE-----KTSWKANTTTVSKIAKP 59
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
L VN+ + R+ F E RVLGGGLVPG+LVL+GG+PGVGKSTLLLQ+A
Sbjct: 60 LRVNEISTNKELRL---NTFDLEFNRVLGGGLVPGALVLLGGEPGVGKSTLLLQIA---- 112
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
L P +YVSGEES +QI RADR+ +E F+ + T ++I +++ P +
Sbjct: 113 ----LKLPYRTLYVSGEESQKQIKMRADRIHPNSETCFILTETKTQNIFRQIEATEPDIV 168
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
+IDSIQT++ + +AG + QV+ECT+ L++FAK+TN PV+L GH+TK G IAGP++LE
Sbjct: 169 VIDSIQTLHSDYIESAAGSISQVRECTAELIKFAKETNTPVILIGHITKDGSIAGPKILE 228
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VL EG++ YR+LR++KNRFGST ELG++EM GL+ V+NPS+I +S+ +
Sbjct: 229 HMVDTVLQFEGDRNYVYRILRALKNRFGSTAELGIYEMQGGGLRQVNNPSEILISK---N 285
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
E L+G A+A ++G R +IEIQAL + T R G A R +M+++VL K+AG
Sbjct: 286 DEGLSGTAIASTVEGMRPLMIEIQALVSTAVYGTPQRSTTGYNAKRLNMLLAVLEKRAGF 345
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
KL +FLN+ G+++ + A DLAV AAI SS + PI G+ F E+GL GE+R V R
Sbjct: 346 KLGAKDVFLNITGGISVDDPAIDLAVIAAILSSNEDIPIEKGVCFAAEVGLAGEIRPVQR 405
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFE 562
+ +R+S KLG+ V K+ + +L E
Sbjct: 406 VNQRISEAEKLGFTSIYVSKNNKITLKNTKIE 437
>gi|291544174|emb|CBL17283.1| DNA repair protein RadA [Ruminococcus champanellensis 18P13]
Length = 455
Score = 348 bits (893), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 203/472 (43%), Positives = 286/472 (60%), Gaps = 27/472 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
RT +VC++CGY +W G C C + +++ ES P V+ + ++ R+
Sbjct: 5 RTVYVCTECGYESLKWNGKCAGCGAWNSLE-----ESTPAPAVKSAPGARAAVDLSD-RI 58
Query: 173 LEVNKGMKQLDWRIPLSGLFG-NEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAII 231
LE + Q+D + G E+ RVLGGGLV G LVL+GG+PG+GKSTLLLQ+
Sbjct: 59 LE----LSQVDMESEVRYRTGMGELDRVLGGGLVKGELVLLGGEPGIGKSTLLLQIC--- 111
Query: 232 ADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRA 291
LG+ V+YVSGEES QI RA R+ + TE L+L + D E I + + P
Sbjct: 112 ---QYLGQNHSVLYVSGEESARQIKLRAQRLGVDTESLYLLTVNDAEAICDTICSTEPDV 168
Query: 292 LIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVL 351
+IIDSIQT+ L ++ S G L QV+ECT+ + AK+ IP+ + GHV K G IAGP+V+
Sbjct: 169 VIIDSIQTMSLSQISSSPGSLTQVRECTNLFMHTAKRQEIPIFIVGHVNKDGAIAGPKVM 228
Query: 352 EHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHS 411
EHIVDAVLY EGE+ SYR+LR+VKNRFGST+E+GVFEM GL+ V NPS++ L+ +
Sbjct: 229 EHIVDAVLYFEGERHLSYRILRAVKNRFGSTNEIGVFEMIDKGLREVENPSQMLLAGR-- 286
Query: 412 DSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAG 469
++G VA +M+GSR L E+QAL S+ R G+ R +I++VL K+ G
Sbjct: 287 -PHGVSGTCVACVMEGSRPILAEVQALATKSGFSSPRRMSTGVDFGRMAIIMAVLEKRLG 345
Query: 470 LKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVS 529
+ ++LN+V G L E AGDL VA A+ S L+ PI + GEIGLGGE+R V+
Sbjct: 346 MFFGTLDVYLNIVGGFRLDEPAGDLPVALALSSCLLDKPIDEKLIAFGEIGLGGEVRSVT 405
Query: 530 RMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQ--MEFIGCKNLKEVINVV 579
+ +RV ++G+ CIVPK +SL T+ Q M IG +LK+ ++V+
Sbjct: 406 HLIQRVREAERMGFETCIVPK---QSLQTIDPSQYNMRIIGVSSLKQAVSVI 454
>gi|421488104|ref|ZP_15935499.1| DNA repair protein RadA [Streptococcus oralis SK304]
gi|400369265|gb|EJP22267.1| DNA repair protein RadA [Streptococcus oralis SK304]
Length = 445
Score = 348 bits (893), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 193/466 (41%), Positives = 282/466 (60%), Gaps = 24/466 (5%)
Query: 117 VCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRLLEVN 176
+C +C Y ++ G C C S + + V T KP ++ V + VN
Sbjct: 1 MCQNCAYNSPKYLGRCPNCGSWSSFVEEVEVAEVKNARVSLTGEKTKPMKLAEVTSINVN 60
Query: 177 KGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHD 236
+ +++ E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ ++ V
Sbjct: 61 RTKTEME-----------EFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSQV-- 107
Query: 237 LGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIIDS 296
V+YVSGEES +QI RA+R+ E +LY+ T+++ + +V+ + P LIIDS
Sbjct: 108 ----GTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSVRAEVERIQPDFLIIDS 163
Query: 297 IQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVD 356
IQT+ ++G G + QV+E T+ L++ AK NI + + GHVTK G +AGPR+LEH+VD
Sbjct: 164 IQTIMSPEISGVQGSVSQVREVTAELMQLAKTNNIAIFIVGHVTKEGTLAGPRMLEHMVD 223
Query: 357 AVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFL 416
VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS++FL E+ +
Sbjct: 224 TVLYFEGERHHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGA--- 280
Query: 417 AGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGLKLQE 474
G ++ V M+G+R L E+QAL R G+ +RA +I++VL K+AGL LQ
Sbjct: 281 TGSSIVVTMEGTRPILAEVQALVTPTMFGNAKRTTTGLDFNRASLIMAVLEKRAGLLLQN 340
Query: 475 NAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKR 534
+L GV L E A DLAVA AI SS+ + P F+GE+GL GE+R V+R+E+R
Sbjct: 341 QDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKPTNPQECFVGELGLTGEIRRVNRIEQR 400
Query: 535 VSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
++ AKLG+ K VPK++ + +++E IG ++EV+ VF
Sbjct: 401 INEAAKLGFTKIYVPKNSLTGITPP--KEIEVIGVTTIQEVLKKVF 444
>gi|375256782|ref|YP_005015949.1| DNA repair protein RadA [Tannerella forsythia ATCC 43037]
gi|363407263|gb|AEW20949.1| DNA repair protein RadA [Tannerella forsythia ATCC 43037]
Length = 456
Score = 348 bits (893), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 198/474 (41%), Positives = 286/474 (60%), Gaps = 29/474 (6%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
++ ++CSDCG +W G C +C G Y + P R+ E ++P L
Sbjct: 5 KSVYICSDCGAESPKWVGKCPSC---GAWNTYVEELVKKEPAAWRSVPGIVHEGMKPRLL 61
Query: 173 LEVN-KGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAII 231
+V K ++D + E+ RVLGGGLV GSLVL+GG+PG+GKSTL+LQ +
Sbjct: 62 RDVTAKEETRID-------MHDAELNRVLGGGLVKGSLVLVGGEPGIGKSTLVLQTVLQM 114
Query: 232 ADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEEL---FLYSSTDIEDIVEKVQPLS 288
D+H L YVSGEES +Q+ RADR+ + +Y T++E + + Q L
Sbjct: 115 KDLHTL-------YVSGEESAQQLKMRADRLAGKDTNMGNCHVYCETNLEQVFVQAQNLQ 167
Query: 289 PRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGP 348
P LIIDSIQT++ S G + QV+EC++A+L+FAK+T PVL+ GH+ K G IAGP
Sbjct: 168 PDLLIIDSIQTMFTDRAESSPGSITQVRECSAAVLKFAKETGTPVLMIGHINKEGSIAGP 227
Query: 349 RVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSE 408
+VLEHIVD VL EG++ YR+LRS+KNRFGST ELG++EM Q GL+ V NPS++ L+E
Sbjct: 228 KVLEHIVDTVLQFEGDQHYMYRILRSIKNRFGSTSELGIYEMRQSGLRQVENPSELLLTE 287
Query: 409 QHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMK 466
H E L+G+A+A M+G+R FLIE Q+L S T R G R +M+++VL K
Sbjct: 288 GH---EGLSGVAIAAAMEGARPFLIETQSLVSSAVYGTPQRSATGFDLRRMNMLLAVLEK 344
Query: 467 QAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELR 526
+AG KL + +FLN+ G+ +++ A DL V +A+ SS L+ PI GE+GL GE+R
Sbjct: 345 RAGFKLVQKDVFLNIAGGLRVSDPAIDLPVISAVLSSSLDIPIDRSTCMAGEVGLSGEIR 404
Query: 527 MVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
V+R+E+R+ KLG+ + IVP+ K L L +M+ + ++E +F
Sbjct: 405 PVNRIEQRIQEAGKLGFTRMIVPQM--KGLEALE-SKMKIFQVRKVEEAFRELF 455
>gi|423345033|ref|ZP_17322722.1| DNA repair protein RadA [Parabacteroides merdae CL03T12C32]
gi|409222819|gb|EKN15756.1| DNA repair protein RadA [Parabacteroides merdae CL03T12C32]
Length = 456
Score = 348 bits (893), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 200/471 (42%), Positives = 289/471 (61%), Gaps = 23/471 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRT-WLPQKPEEVQPVR 171
+T +VCS+CG +W G C +C G Y + PV +R + +V+PV
Sbjct: 5 KTVYVCSNCGVDSPKWIGKCPSC---GEWNTYVEEIVVKEPVGKRALYDVSDGGKVRPVL 61
Query: 172 LLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAII 231
L ++ + + R+ L E+ RVLGGGLV GSLVLIGG+PG+GKSTL+LQ +
Sbjct: 62 LRDITS---EEETRVDLGD---RELNRVLGGGLVKGSLVLIGGEPGIGKSTLVLQTVLGL 115
Query: 232 ADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRA 291
+ L YVSGEES Q+ RADR+ + F+ T++E I + + + P
Sbjct: 116 KGLRTL-------YVSGEESSRQLKLRADRIAHENPDCFILCETNLEQIFVQTKNVQPDL 168
Query: 292 LIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVL 351
LIIDSIQT+Y V S G + QV+EC++A+L++AK++ PVLL GH+ K G IAGP+VL
Sbjct: 169 LIIDSIQTIYTEVVESSPGSVSQVRECSAAILKYAKESGTPVLLIGHINKEGSIAGPKVL 228
Query: 352 EHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHS 411
EHIVD VL EG++ YR+LRS+KNRFGST ELG++EM Q GL+ VSNPS++ L++ H
Sbjct: 229 EHIVDTVLQFEGDQHYMYRILRSIKNRFGSTAELGIYEMRQDGLREVSNPSELLLTQNH- 287
Query: 412 DSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAG 469
E L+G+A+A ++G R FLIE QAL S T R G R +M+++VL K+AG
Sbjct: 288 --EGLSGVAIAAAIEGIRPFLIETQALVSSAVYGTPQRSATGFDLRRMNMLLAVLEKRAG 345
Query: 470 LKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVS 529
KL + +FLN+ G+ + + A DLAV +AI SS L+ I GI+ GE+GL GE+R V+
Sbjct: 346 FKLVQKDVFLNIAGGLKVNDPAIDLAVISAILSSSLDISIEPGISMCGEVGLSGEIRPVN 405
Query: 530 RMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
R+E+R+ KLG+ + I+P + K T +M+ + + ++E +F
Sbjct: 406 RIEQRILEAEKLGFSRIIIPHNNLKGFDTSKC-KMQIVQVRKVEEAFRQLF 455
>gi|404484415|ref|ZP_11019619.1| DNA repair protein RadA [Barnesiella intestinihominis YIT 11860]
gi|404339420|gb|EJZ65851.1| DNA repair protein RadA [Barnesiella intestinihominis YIT 11860]
Length = 457
Score = 348 bits (893), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 193/475 (40%), Positives = 287/475 (60%), Gaps = 36/475 (7%)
Query: 116 WVCSDCGYTDGQWWGMCRAC-------ESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQ 168
+ C++CG +W G C C E V + K + G + G + Q PQ+ +++Q
Sbjct: 8 YFCNNCGAESPKWIGRCPVCGEWNTYVEEVVSTKSAAGGRGEFGTMEQSKVRPQRIDDIQ 67
Query: 169 PVRLLEVNKGMKQLDWRIPLSGLFGN-EVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQM 227
+ RI L GN E+ RVLGGGLV GSLVLIGG+PG+GKSTL+LQ
Sbjct: 68 ITE-----------ESRIDL----GNGELNRVLGGGLVRGSLVLIGGEPGIGKSTLILQT 112
Query: 228 AAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPL 287
+ + V+YVSGEES Q+ RA+R+ + ++ T +EDI ++ +
Sbjct: 113 VLAL-------KGQKVLYVSGEESARQLKLRAERIGGNAPDCYIVCETSLEDIFVHIRNV 165
Query: 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAG 347
P ++IDSIQT+ + S G + QV+EC ++LL+FAK+TN PVLL GH+ K G IAG
Sbjct: 166 DPDIVVIDSIQTIATSAMESSPGSVGQVRECAASLLKFAKQTNTPVLLVGHINKEGSIAG 225
Query: 348 PRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLS 407
P+VLEHIVD VL EG++ YR+LRS+KNRFGST ELG++EM Q GL+ VSNPS++ L+
Sbjct: 226 PKVLEHIVDTVLQFEGDRHYLYRILRSIKNRFGSTSELGIYEMRQNGLREVSNPSEMLLT 285
Query: 408 EQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLM 465
+ H E L+G+A+AV ++G R FLIE QAL + + T R G R +M+++VL
Sbjct: 286 QNH---EGLSGVAIAVTIEGIRPFLIETQALVSTAAYGTPQRSATGFDLRRMNMLLAVLE 342
Query: 466 KQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGEL 525
K+ G KL + +FLN+ G+ + + A DLAV +AI SS ++ I G GE+GL GE+
Sbjct: 343 KRVGFKLAQKDVFLNIAGGIKVNDPAMDLAVISAILSSNMDMAIEAGTCMTGEVGLSGEI 402
Query: 526 RMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
R ++R+E+R+ KLG+++ ++P++ K T +E + + ++E +F
Sbjct: 403 RPINRIEQRILEAEKLGFKRMLIPQNNLKGFDTSRL-AIELVAVRKVEEAFRQLF 456
>gi|402493722|ref|ZP_10840472.1| DNA repair protein RadA [Aquimarina agarilytica ZC1]
Length = 454
Score = 348 bits (893), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 191/471 (40%), Positives = 286/471 (60%), Gaps = 23/471 (4%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVR 171
+T + C CG +W G C +C+S ++ E E + K + +P++
Sbjct: 4 TKTTFYCQSCGAQYAKWQGQCNSCKSWNSIVE-EIIEKQEKVAWKEASSNSKKKVSKPLK 62
Query: 172 LLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAII 231
+ E++ D R E RVLGGGLVPGSL L+GG+PG+GKSTLLLQ+A
Sbjct: 63 VSEIDTTA---DIRFNTGD---GEFNRVLGGGLVPGSLTLLGGEPGIGKSTLLLQIA--- 113
Query: 232 ADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRA 291
L P +YVSGEES +QI RA+RM T+ F+ + T + I +++ P
Sbjct: 114 -----LKLPFKTLYVSGEESQKQIKMRAERMQSDTDNCFILTETKTQHIFKQIAKTEPDV 168
Query: 292 LIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVL 351
L+IDSIQT++ + S G + Q++ECTS L++FAK+TN PVLL GH+TK G IAGP++L
Sbjct: 169 LVIDSIQTLHTDYIESSPGSISQIRECTSELIKFAKETNTPVLLIGHITKDGTIAGPKIL 228
Query: 352 EHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHS 411
EH+VD VL EG++ YR+LR+ KNRFGST ELG++EM GL+ V+NPS++ LS++
Sbjct: 229 EHMVDTVLQFEGDRNFVYRILRAHKNRFGSTAELGIYEMQSAGLREVANPSELLLSKKE- 287
Query: 412 DSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAG 469
E L+G A+A ++G R +IEIQAL + T R G R +M+++VL K+AG
Sbjct: 288 --EALSGTAIASTIEGMRPLMIEIQALVSTAVYGTPQRSTTGFPVKRLNMLLAVLEKRAG 345
Query: 470 LKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVS 529
+L +FLN+ G+ + + A DLAV AAI SS + P+ GI F E+GL GE+R VS
Sbjct: 346 FRLGAKDVFLNITGGIHVDDPAIDLAVVAAILSSNEDIPLEKGICFAAEVGLAGEIRPVS 405
Query: 530 RMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
R+++R+ KLG+ + ++ K ++ S+ + G +Q I +++V++ +F
Sbjct: 406 RVDQRIQEAEKLGFSQILISKYSKTSVTSKGIQQ---IKVARIEDVVSYLF 453
>gi|406985836|gb|EKE06550.1| hypothetical protein ACD_18C00330G0002 [uncultured bacterium]
Length = 452
Score = 348 bits (893), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 197/475 (41%), Positives = 289/475 (60%), Gaps = 43/475 (9%)
Query: 114 TNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRLL 173
T + CS C +W G C C GT+ + ++T L K E++ L
Sbjct: 6 TLFTCSKCDAQFTKWSGRCLECGQWGTITEQEKTIDKK----EKTKLNYKVTEIKS--LN 59
Query: 174 EVNKG-MKQLDWRIPLSGLFGNEVARVLG--------GGLVPGSLVLIGGDPGVGKSTLL 224
E+NK ++++ +I +E+ RVLG G VPGSLVL+GG+PG+GKSTL
Sbjct: 60 EINKQELQRISTKI-------SELDRVLGSSDVTGQNAGFVPGSLVLLGGEPGIGKSTLS 112
Query: 225 LQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKV 284
+Q+A++I SP +Y+SGEESVEQI RADR+ I +++LFL + T+IE I +
Sbjct: 113 IQLASLI---------SPTIYISGEESVEQIKMRADRLKIKSDKLFLANETNIETICATI 163
Query: 285 QPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGD 344
+ P +IIDSIQT+Y V G AG + Q++ CT+ LL AK T+ +++ GHVTK G
Sbjct: 164 EKAKPTMVIIDSIQTIYSEEVEGEAGNINQIRACTAKLLEVAKATSTTIIIIGHVTKEGT 223
Query: 345 IAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKI 404
+AGPR LEH+VD VLY+EG++ SYR+LR+VKNRFG+TDE+G+FEM+++GLQAV NPS
Sbjct: 224 VAGPRTLEHMVDTVLYLEGDRHHSYRILRTVKNRFGATDEVGIFEMNEMGLQAVKNPSAC 283
Query: 405 FLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVS---RHVNGIQASRADMII 461
FL E+ +S G + +M+G+R LIEIQAL V+ ++ R +G +R ++
Sbjct: 284 FLEEREDNS---PGSVITCLMEGTRPMLIEIQAL-VNKTSFGFPVRKASGFDLNRLHVLT 339
Query: 462 SVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGL 521
+VL K+AGL L + I +NVV G+ +E A DLAV AI SSF + + + GE+GL
Sbjct: 340 AVLQKRAGLNLGQYDIHINVVGGIRASEPAADLAVCLAIASSFKDKELGKDLVVFGEVGL 399
Query: 522 GGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVI 576
GGE+R ++++EKR+ LG ++ I K+ ++ I KN+ E+I
Sbjct: 400 GGEVRSIAQLEKRIKESHGLGMKRVITHLGKNKNKT-----DIKIIDVKNIAELI 449
>gi|288802277|ref|ZP_06407717.1| DNA repair protein RadA [Prevotella melaninogenica D18]
gi|288335244|gb|EFC73679.1| DNA repair protein RadA [Prevotella melaninogenica D18]
Length = 466
Score = 348 bits (893), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 192/457 (42%), Positives = 274/457 (59%), Gaps = 41/457 (8%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQR-------------- 157
++ +VCS+CG +W G C C T K + +D G R
Sbjct: 4 DKIAFVCSNCGQESPKWIGKCPNCGQWNTFKEFRIA-ADTGSQAARNAATTLRNAASGGS 62
Query: 158 -TWLPQKPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDP 216
+ L KP+ ++ + D RI + E+ RVLGGGLVPGS+VL+GG+P
Sbjct: 63 VSALANKPQRLRDIS--------SHDDPRIDM---HDGELNRVLGGGLVPGSIVLLGGEP 111
Query: 217 GVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRM-MIATEELFLYSST 275
G+GKSTL LQ L V+YVSGEES QI RA+R+ E + + S T
Sbjct: 112 GIGKSTLTLQTI--------LHMTQRVLYVSGEESPHQIKMRAERISKDIAENIIILSET 163
Query: 276 DIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLL 335
+E I E ++ + P ++IDSIQT+ V S G + QV+EC SALLRFAK + +PV+L
Sbjct: 164 SLEHIFEHIRDVQPELVVIDSIQTISTEDVDSSPGNITQVRECASALLRFAKTSGVPVIL 223
Query: 336 AGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGL 395
GH+ K G IAGP++LEHIVD V+ EG++ YR+LRS+KNRFGST ELG++EM Q GL
Sbjct: 224 IGHINKEGSIAGPKILEHIVDTVIQFEGDQHYMYRILRSIKNRFGSTSELGIYEMEQQGL 283
Query: 396 QAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQ 453
+ VSNPS++ L+E H E L+G+A++ ++G+R FL+E QAL S + T R G
Sbjct: 284 REVSNPSELLLTEDH---EGLSGVAISSTIEGARPFLVETQALVSSAAYGTPQRSATGFD 340
Query: 454 ASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGI 513
R +M+++VL K+ G KL + +FLN+ G+ +T+ A DL+V AA+ SS ++ PI G
Sbjct: 341 QRRLNMLLAVLEKRVGFKLMQKDVFLNIAGGLRVTDMAMDLSVIAAVLSSNVDTPIEQGW 400
Query: 514 AFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPK 550
GE+GL GE+R +SR+E+R++ KLG+ I+PK
Sbjct: 401 CMCGEVGLSGEVRPISRIEQRIAEAEKLGFSHIIIPK 437
>gi|300088253|ref|YP_003758775.1| DNA repair protein RadA [Dehalogenimonas lykanthroporepellens
BL-DC-9]
gi|299527986|gb|ADJ26454.1| DNA repair protein RadA [Dehalogenimonas lykanthroporepellens
BL-DC-9]
Length = 466
Score = 348 bits (893), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 209/468 (44%), Positives = 293/468 (62%), Gaps = 25/468 (5%)
Query: 116 WVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRLLEV 175
+VCS CG +W G C C TM Y S P +R P Q + +++
Sbjct: 8 FVCSGCGNESPKWQGKCPGCGEWNTM--YEQAVSTAKPAARRK--PAGANLPQSLSDIKL 63
Query: 176 NKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVH 235
+ G + R+P+ GL E+ RVLGGGLVPGSL LIGG+PG+GKSTLLLQ++A++A
Sbjct: 64 DAGAE----RLPV-GL--GEIDRVLGGGLVPGSLTLIGGEPGIGKSTLLLQISALLA--- 113
Query: 236 DLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIID 295
E +PV+YVSGEE+ QI RA R+ I ++L+L + TD+E I E++ LSP +ID
Sbjct: 114 ---EGAPVLYVSGEETRHQIKTRAARLGIDGKQLYLLNETDLEAITEELDRLSPGLAVID 170
Query: 296 SIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIV 355
SIQT+Y + + GG+ QV+EC + L+R+AK T +PVL+AGHVTK G IAGPR+LEHIV
Sbjct: 171 SIQTIYTPDLEMAPGGVSQVRECAARLVRWAKSTQVPVLIAGHVTKDGAIAGPRLLEHIV 230
Query: 356 DAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEF 415
D VLY+EGE+FSSYR+LRSVKNR+GS +E+G+FEM GL V NPS++FLS D +
Sbjct: 231 DTVLYLEGEQFSSYRILRSVKNRYGSVNEVGIFEMKPQGLTEVQNPSEVFLSR---DRQN 287
Query: 416 LAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMKQAGLKLQ 473
G AV +++GSR L+EIQAL + S R NG+ R +I +VL ++A LKL
Sbjct: 288 PIGSAVVPVLEGSRPLLVEIQALTNATSFGQPRRTANGLDFGRLLIITAVLSRRAYLKLG 347
Query: 474 ENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEK 533
+ +V G+ + E A DLA A AI SS+ + +A IGE+GL GE+R V ++E+
Sbjct: 348 NQDVIASVTGGLNVAEPAADLAAAIAIASSYKNIAVDPRLAAIGEVGLSGEIRNVPQLER 407
Query: 534 RVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVFT 581
R+S +LG+ IVP SA A + + I +++++ + T
Sbjct: 408 RLSEARRLGFTAAIVPASAR---ARSEWPDFKLIHARDIRQALGAALT 452
>gi|29347816|ref|NP_811319.1| DNA repair protein RadA [Bacteroides thetaiotaomicron VPI-5482]
gi|383120120|ref|ZP_09940853.1| DNA repair protein RadA [Bacteroides sp. 1_1_6]
gi|29339717|gb|AAO77513.1| putative DNA repair protein [Bacteroides thetaiotaomicron VPI-5482]
gi|251838379|gb|EES66466.1| DNA repair protein RadA [Bacteroides sp. 1_1_6]
Length = 455
Score = 348 bits (892), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 191/476 (40%), Positives = 288/476 (60%), Gaps = 34/476 (7%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKP------EE 166
+T +VCS+CG +W G C +C G Y +V++ ++P ++
Sbjct: 5 KTVYVCSNCGQESPKWVGKCPSC---GEWNTYVE------EIVRKETTNRRPVSGIETQK 55
Query: 167 VQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQ 226
+PV L E+ + P + +E+ RVLGGGLVPGSLVLIGG+PG+GKSTL++Q
Sbjct: 56 AKPVILSEIEADDE------PRINMHDDELNRVLGGGLVPGSLVLIGGEPGIGKSTLVMQ 109
Query: 227 MAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQP 286
+ D ++YVSGEES Q+ RADR+ + + + T +E I ++
Sbjct: 110 TVLRMPD-------KKILYVSGEESARQLKLRADRLSEVSSDCLIVCETSLEQIYVHIKN 162
Query: 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIA 346
SP +IIDSIQT+ + S G + QV+EC++++LRFAK+T+ PVLL GH+ K G IA
Sbjct: 163 TSPDLVIIDSIQTISTENIESSPGSIAQVRECSASILRFAKETHTPVLLIGHINKEGSIA 222
Query: 347 GPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFL 406
GP+VLEHIVD VL EG++ YR+LRS+KNRFGST ELG++EM Q GL+ VSNPS++ L
Sbjct: 223 GPKVLEHIVDTVLQFEGDQHYMYRILRSIKNRFGSTAELGIYEMRQDGLRQVSNPSELLL 282
Query: 407 SEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVL 464
S+ H E ++G+A+A ++G R FLIE QAL S R G R +M+++VL
Sbjct: 283 SQDH---EGMSGVAIASAIEGVRPFLIETQALVSSAVYGNPQRSATGFDIRRMNMLLAVL 339
Query: 465 MKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGE 524
K+ G KL + +FLN+ G+ + + A DLAV +AI SS ++ + + GEIGL GE
Sbjct: 340 EKRVGFKLAQKDVFLNIAGGLKVNDPAIDLAVISAILSSNMDAAVEPEVCMAGEIGLSGE 399
Query: 525 LRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+R V+R+E+R+ KLG+++ ++PK + + T ++E + + ++E +F
Sbjct: 400 IRPVNRIEQRIGEAEKLGFKRFLLPKYNLQGIDTQKL-KIELVPVRKVEEAFRALF 454
>gi|302346670|ref|YP_003814968.1| DNA repair protein RadA [Prevotella melaninogenica ATCC 25845]
gi|302150487|gb|ADK96748.1| DNA repair protein RadA [Prevotella melaninogenica ATCC 25845]
Length = 466
Score = 348 bits (892), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 196/487 (40%), Positives = 285/487 (58%), Gaps = 43/487 (8%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQR-------------- 157
++ +VCS+CG +W G C C T K + +D G R
Sbjct: 4 DKIAFVCSNCGQESPKWIGKCPNCGQWNTFKEFRIA-ADTGSQAARNAATTLRNAASGGS 62
Query: 158 -TWLPQKPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDP 216
+ L KP+ ++ + D RI + E+ RVLGGGLVPGS+VL+GG+P
Sbjct: 63 VSALANKPQRLRDIS--------SHDDPRIDM---HDGELNRVLGGGLVPGSIVLLGGEP 111
Query: 217 GVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRM-MIATEELFLYSST 275
G+GKSTL LQ L V+YVSGEES QI RA+R+ E + + S T
Sbjct: 112 GIGKSTLTLQTI--------LHMTQRVLYVSGEESPHQIKMRAERISKNIAENIIILSET 163
Query: 276 DIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLL 335
+E I E ++ + P ++IDSIQT+ V S G + QV+EC SALLRFAK + +PV+L
Sbjct: 164 SLEHIFEHIRDVQPELVVIDSIQTISTEDVDSSPGSITQVRECASALLRFAKTSGVPVIL 223
Query: 336 AGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGL 395
GH+ K G IAGP++LEHIVD V+ EG++ YR+LRS+KNRFGST ELG++EM Q GL
Sbjct: 224 IGHINKEGSIAGPKILEHIVDTVIQFEGDQHYMYRILRSIKNRFGSTSELGIYEMEQQGL 283
Query: 396 QAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQ 453
+ VSNPS++ L+E H E L+G+A++ ++G+R FL+E QAL S + T R G
Sbjct: 284 REVSNPSELLLTEDH---EGLSGVAISSTIEGARPFLVETQALVSSAAYGTPQRSATGFD 340
Query: 454 ASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGI 513
R +M+++VL K+ G KL + +FLN+ G+ +T+ A DL+V AA+ SS ++ PI G
Sbjct: 341 QRRLNMLLAVLEKRVGFKLMQKDVFLNIAGGLRVTDMAMDLSVIAAVLSSNVDTPIEQGW 400
Query: 514 AFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLK 573
GE+GL GE+R +SR+E+R++ KLG+ I+PK L G ++ + ++
Sbjct: 401 CMCGEVGLSGEVRPISRIEQRIAEAEKLGFSHIIIPKYNLSGLT--GKYNIQLHPVRKVE 458
Query: 574 EVINVVF 580
E + +F
Sbjct: 459 EALRALF 465
>gi|189468388|ref|ZP_03017173.1| hypothetical protein BACINT_04785 [Bacteroides intestinalis DSM
17393]
gi|189436652|gb|EDV05637.1| DNA repair protein RadA [Bacteroides intestinalis DSM 17393]
Length = 455
Score = 348 bits (892), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 195/476 (40%), Positives = 286/476 (60%), Gaps = 34/476 (7%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKP------EE 166
+T +VC++CG +W G C +C G Y V+++ + ++P E+
Sbjct: 5 KTVYVCNNCGQESPKWVGKCPSC---GEWNTYVE------EVIRKEVVNKRPVSGIETEK 55
Query: 167 VQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQ 226
+P+ L E+ + P L E+ RVLGGGLVPGSLVLIGG+PG+GKSTL+LQ
Sbjct: 56 PKPIVLSEIEADDE------PRIDLHDEELNRVLGGGLVPGSLVLIGGEPGIGKSTLVLQ 109
Query: 227 MAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQP 286
I V+YVSGEES Q+ RADR+ + + + T +E I ++
Sbjct: 110 TVLHIPKKR-------VLYVSGEESARQLKLRADRLSHNSSDCLIVCETSLEQIFVHIKN 162
Query: 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIA 346
P +IIDSIQT+ + S G + QV+EC++++LRFAK+T+ PVLL GH+ K G IA
Sbjct: 163 TRPELVIIDSIQTISTESIESSPGSIAQVRECSASILRFAKETHTPVLLIGHINKEGSIA 222
Query: 347 GPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFL 406
GP+VLEHIVD VL EG++ YR+LRS+KNRFGST ELG++EM Q GL+ VSNPS++ L
Sbjct: 223 GPKVLEHIVDTVLQFEGDQHYMYRILRSIKNRFGSTAELGIYEMRQDGLRQVSNPSELLL 282
Query: 407 SEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVL 464
S+ H E ++G+A+A ++G R FLIE QAL S R G R +M+++VL
Sbjct: 283 SQDH---EGMSGIAIASAIEGIRPFLIETQALVSSAVYGNPQRSATGFDIRRMNMLLAVL 339
Query: 465 MKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGE 524
K+ G KL + +FLN+ G+ + + A DLAV +AI SS ++ I + GEIGL GE
Sbjct: 340 EKRVGFKLAQKDVFLNIAGGLKVNDPAIDLAVISAILSSNMDTAIEPEVCMAGEIGLSGE 399
Query: 525 LRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+R V+R+E+R+ KLG+R+ ++PK + + T ++E I + ++E +F
Sbjct: 400 IRPVNRIEQRIGEAEKLGFRRFVLPKYNLQGIDTKKL-KIELIPVRKVEEAFRALF 454
>gi|325269812|ref|ZP_08136422.1| DNA repair protein RadA [Prevotella multiformis DSM 16608]
gi|324987785|gb|EGC19758.1| DNA repair protein RadA [Prevotella multiformis DSM 16608]
Length = 466
Score = 348 bits (892), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 198/481 (41%), Positives = 286/481 (59%), Gaps = 31/481 (6%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMK--RYSAGESDEGPVVQRTWLPQKPE---- 165
++ +VCS+CG +W G C +C T K R +A + T L K
Sbjct: 4 DKIAYVCSNCGQESAKWIGKCPSCGQWNTFKEIRIAADTGTQAARHAATSLRNKGTGGAV 63
Query: 166 ---EVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKST 222
+P RL +V+ + P L E+ RVLGGGLVPGS+VL+GG+PG+GKST
Sbjct: 64 SVLANKPQRLRDVSSHDE------PRLDLHDGELNRVLGGGLVPGSIVLLGGEPGIGKST 117
Query: 223 LLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMI-ATEELFLYSSTDIEDIV 281
L LQ L V+YVSGEES QI RA+R+ E + + S T +E I
Sbjct: 118 LTLQTI--------LHMTQRVLYVSGEESPHQIKMRAERITKDIAENVIILSETSLEHIF 169
Query: 282 EKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTK 341
E ++ + P +++DSIQT+ V S G + QV+EC SALLRFAK + +PV+L GH+ K
Sbjct: 170 EHIRDVQPDLVVVDSIQTISTEDVDSSPGSITQVRECASALLRFAKTSGVPVILIGHINK 229
Query: 342 SGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNP 401
G IAGP++LEHIVD V+ EG++ YR+LRS+KNRFGST ELG++EM Q GL+ VSNP
Sbjct: 230 EGSIAGPKILEHIVDTVIQFEGDQHYMYRILRSIKNRFGSTSELGIYEMEQQGLRQVSNP 289
Query: 402 SKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADM 459
S++ L+E H E L+G+A++ ++G R FL+E QAL S + T R G R +M
Sbjct: 290 SELLLAEDH---EGLSGVAISSTIEGIRPFLVETQALVSSAAYGTPQRSATGFDQRRLNM 346
Query: 460 IISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEI 519
+++VL K+ G KL + +FLN+ G+ +T+ A DL+V AA+ SS ++ PI G GE+
Sbjct: 347 LLAVLEKRVGFKLMQKDVFLNIAGGLRVTDMAMDLSVIAAVLSSNVDTPIEQGWCMCGEV 406
Query: 520 GLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVV 579
GL GE+R VSR+E+R++ KLG+ I+PK L G +++ + ++E + +
Sbjct: 407 GLSGEVRPVSRIEQRIAEAEKLGFSHIILPKYNLSGLK--GKYKIQLHPVRKVEEALRAL 464
Query: 580 F 580
F
Sbjct: 465 F 465
>gi|377809139|ref|YP_005004360.1| DNA repair protein RadA [Pediococcus claussenii ATCC BAA-344]
gi|361055880|gb|AEV94684.1| DNA repair protein RadA [Pediococcus claussenii ATCC BAA-344]
Length = 456
Score = 348 bits (892), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 194/476 (40%), Positives = 286/476 (60%), Gaps = 31/476 (6%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTM--KRYSAGESDEGPVVQRTWLPQKPEEVQPV 170
+T ++C +CGY ++ G C C T +R S + + V KP+ ++ V
Sbjct: 5 KTQFMCQECGYVSPRYLGKCPNCGRWNTFVEERISEPKEERKSRVSFEGKKSKPQLIKQV 64
Query: 171 RLLE---VNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQM 227
+ E V M++ + RVLGGG+V GSLVLIGGDPG+GKSTLLLQM
Sbjct: 65 SMAEEPRVKTAMEEFN--------------RVLGGGVVAGSLVLIGGDPGIGKSTLLLQM 110
Query: 228 AAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPL 287
+ +A V+YVSGEES QI RADR+ + +E +LY TD+++I + ++ L
Sbjct: 111 SGQLA-----ATGRDVLYVSGEESATQIKMRADRLKVQSENFYLYPETDMKNIRDSIEKL 165
Query: 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAG 347
P ++IDS+QT+ + + G + Q++E T+ LL+ +K NI + + GHVTK G IAG
Sbjct: 166 HPGFVVIDSVQTMQEPDIESAVGSVSQIREITAELLQISKTNNITIFIVGHVTKGGAIAG 225
Query: 348 PRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLS 407
P++LEH+VD VLY EG+ +YR+LR+VKNRFGST+ELG+FEM + GL+ VSNPS+IFL
Sbjct: 226 PKILEHMVDTVLYFEGDLHHTYRILRAVKNRFGSTNELGIFEMREEGLREVSNPSEIFLE 285
Query: 408 EQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLM 465
E+ +D+ G A+ V M+G+R L+EIQAL R +G+ +R +I++VL
Sbjct: 286 ERLTDAN---GSAIVVSMEGTRPILVEIQALITPTIYGNAQRTASGLDRNRVSLIMAVLE 342
Query: 466 KQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGEL 525
K+A L LQ +L GV L E A DLA+A +I SSF +FIGEIGL GE+
Sbjct: 343 KRANLTLQNQDAYLKAAGGVKLDEPAIDLAIAISIVSSFRNQGTEATDSFIGEIGLTGEI 402
Query: 526 RMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVFT 581
R V+R+E+RV+ KLG+++ +PK+ + + + +E +G + E I+ F
Sbjct: 403 RRVNRIEQRVNEAKKLGFKRIFIPKNNLQGWSAP--KGIEVVGVATITEAIHKAFN 456
>gi|212693884|ref|ZP_03302012.1| hypothetical protein BACDOR_03406 [Bacteroides dorei DSM 17855]
gi|212663416|gb|EEB23990.1| DNA repair protein RadA [Bacteroides dorei DSM 17855]
Length = 455
Score = 348 bits (892), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 188/470 (40%), Positives = 285/470 (60%), Gaps = 22/470 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T +VC++CG +W G C +C G Y + P +R +P + +PV L
Sbjct: 5 KTVYVCTNCGQDSPKWVGKCPSC---GAWNTYVEEVVRKKPANKRPVSGLEPVKSKPVTL 61
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
++ G + P + E+ RVLGGGLVPGSLVL+GG+PG+GKSTL+LQ +
Sbjct: 62 NDITGGDE------PRIDMQDEELNRVLGGGLVPGSLVLLGGEPGIGKSTLVLQTVLHLP 115
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
D V+Y+SGEES Q+ RADR+ + + + T +E I ++ P +
Sbjct: 116 D-------RKVLYISGEESTRQLKLRADRIPHNSSDCLIVCETSLEQIYIHIKNTQPDLV 168
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQT+ + S G L+QV+EC++++L+FAK+TN PV+L GH+ K G IAGP+VLE
Sbjct: 169 IIDSIQTISTETIDSSPGSLVQVRECSASILKFAKETNTPVILIGHINKEGSIAGPKVLE 228
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
HIVD VL EG++ YR+LRS+KNRFGST ELG++EM Q GL+ VSNPS++ LS+ H
Sbjct: 229 HIVDTVLQFEGDQHYMYRILRSIKNRFGSTAELGIYEMRQNGLRQVSNPSELLLSQDH-- 286
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
+ ++G+A+A ++G R FLIE QAL S R G R +M+++VL K+ G
Sbjct: 287 -DGMSGVAIASAIEGVRPFLIETQALVSSAVYGNPQRSATGFDLRRMNMLLAVLEKRVGF 345
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
KL + +FLN+ G+ + + A DL+V +AI SS ++ + GE+GL GE+R V+R
Sbjct: 346 KLAQKDVFLNIAGGLKVNDPAIDLSVISAILSSNMDTEVERDTCMAGEVGLSGEIRPVNR 405
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+E+R+ KLG+++ ++PK + + T ++E I + ++E +F
Sbjct: 406 IEQRIGEAEKLGFKRILIPKHNLQGMDTSKL-KIEIIPVRKVEEAFRALF 454
>gi|419707152|ref|ZP_14234649.1| DNA repair protein radA [Streptococcus salivarius PS4]
gi|383283112|gb|EIC81079.1| DNA repair protein radA [Streptococcus salivarius PS4]
Length = 466
Score = 348 bits (892), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 189/442 (42%), Positives = 269/442 (60%), Gaps = 22/442 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
++ +VC +CGY ++ G C C S + + + + V T KP +++ V
Sbjct: 18 KSTFVCRECGYNSPKYLGRCPNCSSWSSFEEEVEVQEVKNARVSLTGEKSKPTKLKEVSS 77
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
+ + +D E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ +A
Sbjct: 78 INYARIKTDMD-----------EFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLA 126
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+ V+YVSGEES EQI R++R+ E +LY+ T+++ + +V+ + P L
Sbjct: 127 N------KGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQAVRSQVEAIKPDFL 180
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQT+ ++G G + QV+E T+ L++ AK NI + GHVTK G +AGPR+LE
Sbjct: 181 IIDSIQTIMSPEISGVQGSVSQVREVTAELMQIAKTNNIATFIVGHVTKEGQLAGPRMLE 240
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS++FL E+
Sbjct: 241 HMVDTVLYFEGERHHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDG 300
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
+ G A+ V M+GSR L E+QAL R G+ +R +I++VL K+ GL
Sbjct: 301 A---TGSAIVVTMEGSRPILAEVQALVTPTVFGNAKRTTTGLDFNRVSLIMAVLEKRCGL 357
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ +L GV L E A DLAVA AI SS+ E P AFIGEIGL GE+R V+R
Sbjct: 358 LLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKELPTNPQEAFIGEIGLTGEIRRVTR 417
Query: 531 MEKRVSTVAKLGYRKCIVPKSA 552
+E+R++ AKLG+ + PK++
Sbjct: 418 IEQRINEAAKLGFTRIYAPKNS 439
>gi|154492758|ref|ZP_02032384.1| hypothetical protein PARMER_02397 [Parabacteroides merdae ATCC
43184]
gi|423723611|ref|ZP_17697760.1| DNA repair protein RadA [Parabacteroides merdae CL09T00C40]
gi|154087063|gb|EDN86108.1| DNA repair protein RadA [Parabacteroides merdae ATCC 43184]
gi|409241321|gb|EKN34091.1| DNA repair protein RadA [Parabacteroides merdae CL09T00C40]
Length = 456
Score = 348 bits (892), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 200/471 (42%), Positives = 289/471 (61%), Gaps = 23/471 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRT-WLPQKPEEVQPVR 171
+T +VCS+CG +W G C +C G Y + PV +R + +V+PV
Sbjct: 5 KTVYVCSNCGADSPKWIGKCPSC---GEWNTYVEEIVVKEPVGKRALYGVSDGGKVRPVL 61
Query: 172 LLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAII 231
L ++ + + R+ L E+ RVLGGGLV GSLVLIGG+PG+GKSTL+LQ +
Sbjct: 62 LRDITS---EEETRVDLGD---RELNRVLGGGLVKGSLVLIGGEPGIGKSTLVLQTVLGL 115
Query: 232 ADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRA 291
+ L YVSGEES Q+ RADR+ + F+ T++E I + + + P
Sbjct: 116 KGLRTL-------YVSGEESSRQLKLRADRIAHENPDCFILCETNLEQIFVQTKNVQPDL 168
Query: 292 LIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVL 351
LIIDSIQT+Y V S G + QV+EC++A+L++AK++ PVLL GH+ K G IAGP+VL
Sbjct: 169 LIIDSIQTIYTEVVESSPGSVSQVRECSAAILKYAKESGTPVLLIGHINKEGSIAGPKVL 228
Query: 352 EHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHS 411
EHIVD VL EG++ YR+LRS+KNRFGST ELG++EM Q GL+ VSNPS++ L++ H
Sbjct: 229 EHIVDTVLQFEGDQHYMYRILRSIKNRFGSTAELGIYEMRQDGLREVSNPSELLLTQNH- 287
Query: 412 DSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAG 469
E L+G+A+A ++G R FLIE QAL S T R G R +M+++VL K+AG
Sbjct: 288 --EGLSGVAIAAAIEGIRPFLIETQALVSSAVYGTPQRSATGFDLRRMNMLLAVLEKRAG 345
Query: 470 LKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVS 529
KL + +FLN+ G+ + + A DLAV +AI SS L+ I GI+ GE+GL GE+R V+
Sbjct: 346 FKLVQKDVFLNIAGGLKVNDPAIDLAVISAILSSSLDISIEPGISMCGEVGLSGEIRPVN 405
Query: 530 RMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
R+E+R+ KLG+ + I+P + K T +M+ + + ++E +F
Sbjct: 406 RIEQRILEAEKLGFSRIIIPHNNLKGFDTSKC-KMQIVQVRKVEEAFRQLF 455
>gi|229040988|ref|ZP_04189751.1| DNA repair protein radA [Bacillus cereus AH676]
gi|228727285|gb|EEL78479.1| DNA repair protein radA [Bacillus cereus AH676]
Length = 438
Score = 348 bits (892), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 203/468 (43%), Positives = 285/468 (60%), Gaps = 40/468 (8%)
Query: 118 CSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRLLEV-N 176
C CG QW + E V + +R + + + V + P RL EV
Sbjct: 4 CPGCG----QWNSLVEEMEPVVSSRRLNYANAIQTEVTK------------PRRLTEVET 47
Query: 177 KGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADV-H 235
K +++ + E RVLGGG+V GSLVLIGGDPG+GKSTLLLQ+++ +AD +
Sbjct: 48 KSEARIETKF-------QEFNRVLGGGIVDGSLVLIGGDPGIGKSTLLLQISSQLADASY 100
Query: 236 DLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIID 295
D V+Y+SGEES +QI RADR+ + LF+ S TD++ I ++ ++P ++ID
Sbjct: 101 D------VLYISGEESAKQIKLRADRLHVNGSNLFVVSETDLQRIAAHIEEMNPAFVVID 154
Query: 296 SIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIV 355
SIQT++L V + G + QV+ECT+ L++ AK IP+ + GHVTK G IAGPR+LEH+V
Sbjct: 155 SIQTIHLPEVTSAPGSVAQVRECTAELMKLAKTKGIPIFIVGHVTKEGAIAGPRMLEHMV 214
Query: 356 DAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEF 415
DAVLY EG++ +YR+LR+VKNRFGST+E+G+FEM +LGL V NPS+IFL E+
Sbjct: 215 DAVLYFEGDRHHTYRILRAVKNRFGSTNEMGIFEMKELGLAEVLNPSEIFLEERPVG--- 271
Query: 416 LAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVLMKQAGLKLQ 473
+AG V M+G+R L+EIQAL S R GI +R +I++VL K+ GL LQ
Sbjct: 272 VAGSTVVASMEGTRPVLVEIQALISPTSFGNPRRMATGIDHNRVSLIMAVLEKRTGLLLQ 331
Query: 474 ENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEK 533
+L V G+ L E A DLAVA +I SSF + A IGE+GL GE+R VSR+E+
Sbjct: 332 NQDAYLKVAGGLKLDEPAIDLAVALSIASSFRDKSTAPTDAVIGEVGLTGEIRRVSRIEQ 391
Query: 534 RVSTVAKLGYRKCIVPKSAEKSLATLGF-EQMEFIGCKNLKEVINVVF 580
RV AKLG+++ I+P+ K+L E +E +G NL E + +
Sbjct: 392 RVQEAAKLGFQRAIIPR---KNLGGWTIPEGIEVVGVSNLGEALRLTL 436
>gi|228477971|ref|ZP_04062582.1| DNA repair protein RadA [Streptococcus salivarius SK126]
gi|228250151|gb|EEK09404.1| DNA repair protein RadA [Streptococcus salivarius SK126]
Length = 466
Score = 348 bits (892), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 190/442 (42%), Positives = 269/442 (60%), Gaps = 22/442 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
++ +VC +CGY ++ G C C S + + + + V T KP +++ V
Sbjct: 18 KSTFVCRECGYNSPKYLGRCPNCSSWSSFEEEVEVQEVKNARVSLTGEKSKPTKLKEVSS 77
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
+ + +D E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ +A
Sbjct: 78 INYARIKTDMD-----------EFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLA 126
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+ V+YVSGEES EQI R++R+ E +LY+ T+++ + +V+ + P L
Sbjct: 127 N------KGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQAVRSQVEAIKPDFL 180
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQT+ ++G G + QV+E T+ L++ AK NI + GHVTK G +AGPR+LE
Sbjct: 181 IIDSIQTIMSPEISGVQGSVSQVREVTAELMQIAKTNNIATFIVGHVTKEGQLAGPRMLE 240
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS++FL E+
Sbjct: 241 HMVDTVLYFEGERHHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDG 300
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
+ G A+ V M+GSR L E+QAL R G+ +R +I++VL K+ GL
Sbjct: 301 A---TGSAIVVTMEGSRPILAEVQALVTPTVFGNAKRTTTGLDFNRVSLIMAVLEKRCGL 357
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ +L GV L E A DLAVA AI SS+ E P AFIGEIGL GE+R V+R
Sbjct: 358 LLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKELPTNPQEAFIGEIGLTGEIRRVTR 417
Query: 531 MEKRVSTVAKLGYRKCIVPKSA 552
+E+R++ AKLG+ K PK++
Sbjct: 418 IEQRINEAAKLGFTKIYAPKNS 439
>gi|89100728|ref|ZP_01173583.1| RadA [Bacillus sp. NRRL B-14911]
gi|89084545|gb|EAR63691.1| RadA [Bacillus sp. NRRL B-14911]
Length = 460
Score = 348 bits (892), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 189/442 (42%), Positives = 270/442 (61%), Gaps = 22/442 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYS---AGESDEGPVVQRTWLPQKPEEVQP 169
+T ++C +CGY +W G C AC TM + A G + +
Sbjct: 5 KTKFICQECGYESAKWMGKCPACGQWNTMVEETEKPAAGGRRGAFAHSAGVTLASKATPI 64
Query: 170 VRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAA 229
+ VN+ D + E+ RVLGGG+V GSLVLIGGDPG+GKSTLLLQ+++
Sbjct: 65 TSIETVNEPRIYTDLK---------ELNRVLGGGVVRGSLVLIGGDPGIGKSTLLLQVSS 115
Query: 230 IIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSP 289
+A + V+Y+SGEES+ Q RADR+ + +++L +Y+ T++E+I ++ +P
Sbjct: 116 QLAR-----KDHSVLYISGEESMRQTKLRADRLGVVSDKLLVYAETNLEEISRTIENENP 170
Query: 290 RALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPR 349
+IIDSIQTV+ + + G + QV+ECT+ L+R K I + + GHVTK G IAGPR
Sbjct: 171 SFVIIDSIQTVFHPDITSAPGSVSQVRECTAELMRIGKTKGIAIFIVGHVTKEGSIAGPR 230
Query: 350 VLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQ 409
+LEH+VD VLY EGE+ +YR+LR+VKNRFGST+E+G+FEM + GL+ V NPS+IFL E+
Sbjct: 231 LLEHMVDTVLYFEGERHHTYRILRAVKNRFGSTNEMGIFEMKEFGLEEVENPSEIFLEER 290
Query: 410 HSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVLMKQ 467
S+ +G V M+G+R L+EIQAL S R GI +R ++++VL K+
Sbjct: 291 ---SQGASGSTVVASMEGTRPVLVEIQALISPTSFGNPRRMATGIDHNRVPLLMAVLEKR 347
Query: 468 AGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRM 527
G+ LQ +L V GV L E A DLA+A +I SSF + P IGE+GL GE+R
Sbjct: 348 VGMLLQNQDAYLKVAGGVKLDEPAIDLAIAVSIASSFRDKPTQASDCIIGEVGLTGEVRR 407
Query: 528 VSRMEKRVSTVAKLGYRKCIVP 549
VSR+E+RV AKLG+ + I+P
Sbjct: 408 VSRIEQRVQEAAKLGFERIILP 429
>gi|225869752|ref|YP_002745699.1| DNA repair protein RadA [Streptococcus equi subsp. equi 4047]
gi|225699156|emb|CAW92375.1| putative DNA repair protein [Streptococcus equi subsp. equi 4047]
Length = 453
Score = 348 bits (892), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 191/442 (43%), Positives = 274/442 (61%), Gaps = 22/442 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+ ++C +CGY ++ G C C + + E E V+ + E+ +P++L
Sbjct: 5 KARFICGECGYQSPKYLGRCPNCSAWSSFV-----EETEVKDVKNARISLTGEKSKPIKL 59
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
+N G++ + + NE RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ +A
Sbjct: 60 KHIN-GVRYQRIQTEM-----NEFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSIQLA 113
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
D V+YVSGEES EQI R+DR+ + +LY+ T+++ I +++ + P L
Sbjct: 114 D------KGTVLYVSGEESAEQIKMRSDRLGQTDNDFYLYAETNMQAIRAEIEAIQPDFL 167
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQT+ ++G G + QV+E T+ LL+ AK +I + GHVTK G +AGPR+LE
Sbjct: 168 IIDSIQTIMSPEISGVQGSVSQVREVTAELLQLAKSNHIATFIVGHVTKEGTLAGPRMLE 227
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+F+M GL V NPS++FL E+
Sbjct: 228 HMVDTVLYFEGERHHTFRILRAVKNRFGSTNEIGIFDMQSGGLVEVLNPSQVFLEERLDG 287
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
+ G AV V M+GSR L E+QAL + R G+ +R +I++VL K+ GL
Sbjct: 288 A---TGSAVVVTMEGSRPILAEVQALVIPTVFGNARRTTTGLDFNRVSLIMAVLEKRCGL 344
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ +L GV L E A DLAVA AI SS+ E P AF+GEIGL G++R V+R
Sbjct: 345 LLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTNPQEAFLGEIGLTGDIRRVTR 404
Query: 531 MEKRVSTVAKLGYRKCIVPKSA 552
+E+R++ AKLG+ K PKS+
Sbjct: 405 IEQRINEAAKLGFTKLYAPKSS 426
>gi|376316000|emb|CCF99404.1| DNA repair protein RadA [uncultured Flavobacteriia bacterium]
Length = 453
Score = 348 bits (892), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 182/444 (40%), Positives = 278/444 (62%), Gaps = 29/444 (6%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQR----TWLPQKPEEVQ 168
+T++ C +CG + +W G C AC+ T+ V+Q+ +W + +
Sbjct: 5 KTSFFCQNCGSSFSKWQGQCSACKEWNTIAE---------EVIQKAEKVSWKVSETSSKR 55
Query: 169 PVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMA 228
+ L++N+ + R+ NE+ RVLGGGLVPGSL L+GG+PG+GKSTL+LQ+A
Sbjct: 56 VSKSLKINEISTVSEARLNTKN---NELNRVLGGGLVPGSLTLLGGEPGIGKSTLMLQIA 112
Query: 229 AIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLS 288
L P +YVSGEES +QI RA+R+ +E ++ + T ++I ++ LS
Sbjct: 113 --------LQLPYKTLYVSGEESAQQIKMRAERIHPNSENCYILTETKTQNIFTQIAELS 164
Query: 289 PRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGP 348
P ++IDSIQT++ + S G + Q++E T+ L++FAK+TN PV+L GH+TK G+IAGP
Sbjct: 165 PDIVVIDSIQTLHTDYIESSPGSISQIRETTTELIKFAKETNTPVILIGHITKDGNIAGP 224
Query: 349 RVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSE 408
++LEH+VD VL EG++ YR+LRS KNRFGST+ELG++EM GL+ VSNPS+I +S+
Sbjct: 225 KILEHMVDTVLQFEGDRNHVYRILRSQKNRFGSTNELGIYEMQGNGLREVSNPSEILISK 284
Query: 409 QHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMK 466
D L+G A++ ++G R +IEIQAL + T R G A R +MI++VL K
Sbjct: 285 NDED---LSGTAISATLEGMRPLMIEIQALVSTAVYGTPQRSATGYNAKRLNMILAVLEK 341
Query: 467 QAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELR 526
+AG KL +FLN+ G+ + + A DLAV AA+ SS ++ I + F EIGL GE+R
Sbjct: 342 RAGFKLGAKDVFLNITGGINVDDPAIDLAVVAAVLSSNIDISIDKSMCFAAEIGLAGEVR 401
Query: 527 MVSRMEKRVSTVAKLGYRKCIVPK 550
V+++++R+S KLG++ ++ K
Sbjct: 402 PVTKVDQRISEAEKLGFKSIVISK 425
>gi|374709168|ref|ZP_09713602.1| DNA repair protein RadA [Sporolactobacillus inulinus CASD]
Length = 469
Score = 348 bits (892), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 200/480 (41%), Positives = 287/480 (59%), Gaps = 38/480 (7%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTM-----KRYSAG-ESDEGPVVQRTWLPQKPE 165
N+T ++C +CGY +W G C C+ T+ + + G GPV + L +
Sbjct: 4 NKTVYICQECGYESPKWMGRCPGCQQWNTLVEEAIRPAAPGLRQGSGPVSMPSRLTEVVL 63
Query: 166 EVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLL 225
E +P + GM +L+ RVLGGG+VP SL L+GGDPG+GKSTLLL
Sbjct: 64 EEEP----RIKTGMTELN--------------RVLGGGVVPASLTLVGGDPGIGKSTLLL 105
Query: 226 QMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQ 285
Q + +A V+Y+SGEESV Q RA R+ + ++ L++ + TDI I +++
Sbjct: 106 QTSDQLARGGHR-----VLYISGEESVRQTKMRATRLGVTSDALYVLAETDIGQIERQIE 160
Query: 286 PLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDI 345
++P +IIDSIQT+Y ++ + G + QVKECT+ LLR AK+ I V + GHVTK+G +
Sbjct: 161 QVNPEIMIIDSIQTIYNSQLSSAPGSISQVKECTAYLLRLAKQQGIAVFIVGHVTKNGAL 220
Query: 346 AGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIF 405
AGPR LEH+VD VLY EGE+ ++R+LR+VKNRFGST+E+GVFEM + GL V+NPS+IF
Sbjct: 221 AGPRTLEHMVDTVLYFEGERHHTFRILRAVKNRFGSTNEMGVFEMKEGGLVEVANPSEIF 280
Query: 406 LSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISV 463
L E+ + AG AV M+G+R L+E+QAL S R G+ R ++++V
Sbjct: 281 LQERAKGA---AGSAVTASMEGTRPLLVEVQALVTPTSFGNPRRMAAGLDNHRIALLMAV 337
Query: 464 LMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGG 523
L K+ GL LQ ++NV GV L E A DLAVA +I SSF P AF+GEIGL G
Sbjct: 338 LEKRVGLLLQNQDAYINVAGGVKLDEPAVDLAVAISIASSFNNRPTKVTDAFVGEIGLTG 397
Query: 524 ELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGF-EQMEFIGCKNLKEVINVVFTT 582
E+R VSR+++R++ +KLG+ + VP K+L + + IG +L + I + T
Sbjct: 398 EVRRVSRIDQRINEASKLGFSRIFVPS---KNLGGWSVPDGVSVIGVDSLAQAIQLALGT 454
>gi|392530503|ref|ZP_10277640.1| DNA repair protein RadA [Carnobacterium maltaromaticum ATCC 35586]
gi|414085701|ref|YP_006994415.1| DNA repair protein RadA [Carnobacterium maltaromaticum LMA28]
gi|412999291|emb|CCO13100.1| DNA repair protein RadA [Carnobacterium maltaromaticum LMA28]
Length = 458
Score = 348 bits (892), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 194/445 (43%), Positives = 273/445 (61%), Gaps = 22/445 (4%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVG-TMKRYSAGESDEGPVVQRTWLPQKPEEVQ 168
K T +VC CGY +W G C C + M+ ++D V T K E +Q
Sbjct: 3 KKKATKFVCQACGYESPKWMGRCPNCGAWNQMMEELEVDKNDRQNRVSMTGQTAKAEAIQ 62
Query: 169 PVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMA 228
+ + +V + +L NE+ RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++
Sbjct: 63 DITVSKVPRVKTEL-----------NELNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVS 111
Query: 229 AIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLS 288
A ++ G V+YVSGEES QI RADR+ + + ++Y TD+ I + ++ L
Sbjct: 112 A---QLNIAG--GKVLYVSGEESASQIKMRADRLGVKGADFYIYPETDMGAIRQTIEDLK 166
Query: 289 PRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGP 348
P +IIDSIQT+ V+G G + QV+E T+ L++ AK NI + + GHVTK G IAGP
Sbjct: 167 PEYVIIDSIQTMSQPDVSGVVGSVSQVRESTADLMKIAKSNNIAIFIVGHVTKEGAIAGP 226
Query: 349 RVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSE 408
R+LEH+VD VLY EG++ ++R+LR+VKNRFGST+E+G+FEM + GL V NPS++FL E
Sbjct: 227 RMLEHMVDTVLYFEGDRHHTFRILRAVKNRFGSTNEIGIFEMREGGLVEVLNPSELFLEE 286
Query: 409 QHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMK 466
+ + G AV M+G+R L+EIQ+L R +G+ +RA +I++VL K
Sbjct: 287 RLDGA---TGSAVVAAMEGTRPILVEIQSLITPTVFGNAKRTASGVDHNRASLIMAVLEK 343
Query: 467 QAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELR 526
+AGL LQ +L GV L E A DLA+A ++ SS+ E FIGEIGL GE+R
Sbjct: 344 RAGLMLQNQDAYLKAAGGVKLNEPAIDLAIAVSVASSYREKETRAKDCFIGEIGLTGEVR 403
Query: 527 MVSRMEKRVSTVAKLGYRKCIVPKS 551
VSR+++RV AKLG+ + +PK+
Sbjct: 404 RVSRIDQRVQEAAKLGFTRMFIPKN 428
>gi|414157540|ref|ZP_11413837.1| DNA repair protein RadA [Streptococcus sp. F0441]
gi|410871976|gb|EKS19921.1| DNA repair protein RadA [Streptococcus sp. F0441]
Length = 445
Score = 347 bits (891), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 193/466 (41%), Positives = 282/466 (60%), Gaps = 24/466 (5%)
Query: 117 VCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRLLEVN 176
+C +C Y ++ G C C S + + V T KP ++ V + VN
Sbjct: 1 MCQNCEYNSPKYLGRCPNCGSWSSFVEEVEVAEVKNARVSLTGEKTKPMKLAEVTSINVN 60
Query: 177 KGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHD 236
+ +++ E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ ++ V
Sbjct: 61 RTKTEME-----------EFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSQV-- 107
Query: 237 LGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIIDS 296
V+YVSGEES +QI RA+R+ E +LY+ T+++ + +V+ + P LIIDS
Sbjct: 108 ----GTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSVRAEVERIQPDFLIIDS 163
Query: 297 IQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVD 356
IQT+ ++G G + QV+E T+ L++ AK NI + + GHVTK G +AGPR+LEH+VD
Sbjct: 164 IQTIMSPEISGVQGSVSQVREVTAELMQLAKTNNIAIFIVGHVTKEGTLAGPRMLEHMVD 223
Query: 357 AVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFL 416
VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS++FL E+ +
Sbjct: 224 TVLYFEGERHHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGA--- 280
Query: 417 AGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGLKLQE 474
G ++ V M+G+R L E+QAL R G+ +RA +I++VL K+AGL LQ
Sbjct: 281 TGSSIVVTMEGTRPILAEVQALVTPTMFGNAKRTTTGLDFNRASLIMAVLEKRAGLLLQN 340
Query: 475 NAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKR 534
+L GV L E A DLAVA AI SS+ + P F+GE+GL GE+R V+R+E+R
Sbjct: 341 QDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKPTNPQECFVGELGLTGEIRRVNRIEQR 400
Query: 535 VSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
++ AKLG+ K VPK++ + +++E IG ++EV+ VF
Sbjct: 401 INEAAKLGFTKIYVPKNSLTGITPP--KEIEVIGVTTIQEVLKKVF 444
>gi|403385694|ref|ZP_10927751.1| DNA repair protein RadA [Kurthia sp. JC30]
Length = 458
Score = 347 bits (891), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 194/446 (43%), Positives = 278/446 (62%), Gaps = 27/446 (6%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQ---KPEEVQ 168
+T + C++CGY +W G C C TM +E VV + P+ K E
Sbjct: 4 KKTKFACNECGYETAKWMGRCPGCGQWNTM-------VEEVEVVSKG--PRGAFKHSETV 54
Query: 169 PVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMA 228
V+ + Q + R+P E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++
Sbjct: 55 SVKATPIISVETQEEQRVPTEL---TEFNRVLGGGIVPGSLVLIGGDPGIGKSTLLLQVS 111
Query: 229 AIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLS 288
A++++ + V+YVSGEES+ Q RA+R+ + + EL++Y+ T++E I E ++
Sbjct: 112 ALLSN-----KGHRVLYVSGEESIRQTKLRAERLGVQSPELYIYAETNLEMISETIEQTQ 166
Query: 289 PRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGP 348
P+ +I+DSIQTV+ V + G + QV+ECT L+R AK NI + L GHVTK G IAGP
Sbjct: 167 PKFVIVDSIQTVHHPEVTSAPGSVSQVRECTGELMRIAKTKNIAIFLVGHVTKEGQIAGP 226
Query: 349 RVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSE 408
R+LEH+VD VLY EGE+ ++R+LRS KNRFGST+E+ +FEM GL+ V NPS++FL E
Sbjct: 227 RILEHMVDTVLYFEGERHHNHRILRSQKNRFGSTNEIAIFEMVHGGLKEVLNPSEMFLEE 286
Query: 409 QHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVS---RHVNGIQASRADMIISVLM 465
+ S+ G + M+G+R L+EIQAL VS S+ + R G+ +R ++++VL
Sbjct: 287 R---SQGAPGSTIVASMEGTRPILVEIQAL-VSPSSFNYPKRMATGLDQNRVSLLMAVLE 342
Query: 466 KQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGEL 525
K+ GL LQ ++ V GV L E A DLAV +I SSF + F GE+GL GE+
Sbjct: 343 KRMGLMLQSQDAYIKVAGGVKLDEPAIDLAVLVSIVSSFKDMSASPTDCFAGEVGLTGEV 402
Query: 526 RMVSRMEKRVSTVAKLGYRKCIVPKS 551
R V+R+E+RV+ AKLG+++ +P S
Sbjct: 403 RRVTRIEQRVNEAAKLGFKRIFIPSS 428
>gi|265751330|ref|ZP_06087393.1| DNA repair protein RadA [Bacteroides sp. 3_1_33FAA]
gi|345514808|ref|ZP_08794314.1| DNA repair protein RadA [Bacteroides dorei 5_1_36/D4]
gi|229437645|gb|EEO47722.1| DNA repair protein RadA [Bacteroides dorei 5_1_36/D4]
gi|263238226|gb|EEZ23676.1| DNA repair protein RadA [Bacteroides sp. 3_1_33FAA]
Length = 455
Score = 347 bits (891), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 188/470 (40%), Positives = 285/470 (60%), Gaps = 22/470 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T +VC++CG +W G C +C G Y + P +R +P + +PV L
Sbjct: 5 KTVYVCTNCGQDSPKWVGKCPSC---GAWNTYVEEVVRKEPANKRPVSGLEPVKSKPVTL 61
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
++ G + P + E+ RVLGGGLVPGSLVL+GG+PG+GKSTL+LQ +
Sbjct: 62 NDITGGDE------PRIDMQDEELNRVLGGGLVPGSLVLLGGEPGIGKSTLVLQTVLHLP 115
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
D V+Y+SGEES Q+ RADR+ + + + T +E I ++ P +
Sbjct: 116 D-------RKVLYISGEESTRQLKLRADRIPHNSSDCLIVCETSLEQIYIHIKNTQPDLV 168
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQT+ + S G L+QV+EC++++L+FAK+TN PV+L GH+ K G IAGP+VLE
Sbjct: 169 IIDSIQTISTETIDSSPGSLVQVRECSASILKFAKETNTPVILIGHINKEGSIAGPKVLE 228
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
HIVD VL EG++ YR+LRS+KNRFGST ELG++EM Q GL+ VSNPS++ LS+ H
Sbjct: 229 HIVDTVLQFEGDQHYMYRILRSIKNRFGSTAELGIYEMRQNGLRQVSNPSELLLSQDH-- 286
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
+ ++G+A+A ++G R FLIE QAL S R G R +M+++VL K+ G
Sbjct: 287 -DGMSGVAIASAIEGVRPFLIETQALVSSAVYGNPQRSATGFDLRRMNMLLAVLEKRVGF 345
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
KL + +FLN+ G+ + + A DL+V +AI SS ++ + GE+GL GE+R V+R
Sbjct: 346 KLAQKDVFLNIAGGLKVNDPAIDLSVISAILSSNMDTEVERDTCMAGEVGLSGEIRPVNR 405
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+E+R+ KLG+++ ++PK + + T ++E I + ++E +F
Sbjct: 406 IEQRIGEAEKLGFKRILIPKHNLQGMDTSKL-KIEIIPVRKVEEAFRALF 454
>gi|375088015|ref|ZP_09734358.1| DNA repair protein RadA [Dolosigranulum pigrum ATCC 51524]
gi|374563282|gb|EHR34602.1| DNA repair protein RadA [Dolosigranulum pigrum ATCC 51524]
Length = 458
Score = 347 bits (891), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 192/471 (40%), Positives = 289/471 (61%), Gaps = 19/471 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+ N++C++CG ++ G C +C + + + +DE R + E P +
Sbjct: 5 KVNFMCNECGIESPKYLGRCPSCGAWDSFVE-APKAADEDQKDNRKRVSLTGERATPTLI 63
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
EV + ++ +P S E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++A +
Sbjct: 64 TEV-EVEREDRVTVPFS-----EFNRVLGGGIVPGSLVLIGGDPGIGKSTLLLQISAFLN 117
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+ + + V+YVSGEES QI RA+R+ + +LY+ TD+ I + +Q L P +
Sbjct: 118 N-----QGAKVLYVSGEESASQIKMRAERLEVVGANFYLYAETDLSYIQDAIQKLRPDFV 172
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
I+DSIQT++ + ++G + QV+E T+ L++ AK +I + + GHVTK G IAGPR+LE
Sbjct: 173 IVDSIQTMHHPNIDSASGSVSQVRESTATLMQLAKTNDIGIFIVGHVTKEGSIAGPRMLE 232
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM++ GL+ V NPS++FL E+ +
Sbjct: 233 HMVDTVLYFEGEQHHTFRVLRAVKNRFGSTNEIGIFEMNEDGLKEVHNPSQLFLEERLAG 292
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMKQAGL 470
+ G AV M+G+R L+EIQ+L + R +G+ SR +I++VL K+AGL
Sbjct: 293 TN---GSAVVAAMEGTRPILVEIQSLIAPTAFGHAKRTASGLDYSRVSLIMAVLEKRAGL 349
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ +L GV L E A DL++A +I SS+ E FIGEIGL GE+R VS+
Sbjct: 350 LLQNYDAYLKAAGGVKLDEPAIDLSIAMSIVSSYKEKETQATDCFIGEIGLTGEIRRVSK 409
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVFT 581
+E R + AKLG+++ +PK+ + +E IGC + EV+ F
Sbjct: 410 IEARATEAAKLGFKRVFIPKNNIDGWTHP--DGIEVIGCTTVSEVMKRTFN 458
>gi|443322741|ref|ZP_21051757.1| DNA repair protein RadA [Gloeocapsa sp. PCC 73106]
gi|442787494|gb|ELR97211.1| DNA repair protein RadA [Gloeocapsa sp. PCC 73106]
Length = 493
Score = 347 bits (891), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 198/464 (42%), Positives = 288/464 (62%), Gaps = 38/464 (8%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQR------TWLPQKPE 165
NRT +VCS+CG QW+G C C+ GT++ S P+V R T +P+K
Sbjct: 4 NRTVYVCSECGAESPQWFGKCPYCDVYGTLEEQVL--SSNNPLVNRGGWQSGTNVPRKST 61
Query: 166 EV-QPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLL 224
V QP + ++ + + R SG E RVLGGG+VPGSLVLIGGDPG+GKSTLL
Sbjct: 62 SVNQPRMSVLFSQIVSDVQERFN-SGY--GEFDRVLGGGVVPGSLVLIGGDPGIGKSTLL 118
Query: 225 LQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIAT----------------EE 268
LQ A +A L P ++YVS EES +QI RA R+ +
Sbjct: 119 LQTANQLA----LRLPR-ILYVSAEESAQQIKLRASRLGVGVTGLSVGDQNGKEETGEHN 173
Query: 269 LFLYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKK 328
L++ + TD+E+I+ +++ L P+ +IDSIQT+Y + S G + QV+ECTSAL++ AK+
Sbjct: 174 LYVMAETDLEEILRELESLKPQLAVIDSIQTLYFASLTSSPGSVAQVRECTSALMQVAKR 233
Query: 329 TNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVF 388
NI + + GHVTK G IAGPRVLEH+VD VLY EG++++S+RLLRSVKNRFG+T E+G+F
Sbjct: 234 ENITLFIVGHVTKDGAIAGPRVLEHLVDTVLYFEGDRYASHRLLRSVKNRFGATHEIGIF 293
Query: 389 EMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVS 446
EM+ GL+ V+NPS++FL + E + G + V +G+R ++E+QAL S S+
Sbjct: 294 EMADQGLREVANPSELFLGNR---DELVTGTSTVVACEGTRPIVVELQALVSPTSYSSPR 350
Query: 447 RHVNGIQASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLE 506
R G+ +R I++VL K+ G+ L + +++ G+ + E A DL +A A+ +SF +
Sbjct: 351 RSTTGVDYNRLLQILAVLEKRVGIPLSKLDVYVASAGGLGVEEPAADLGMAIAVVASFRD 410
Query: 507 FPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPK 550
+ IGE+GLGG++R+VS+ME R+ AKLG++K IVPK
Sbjct: 411 RVVDPRTVLIGEVGLGGQVRLVSQMELRLKEAAKLGFKKAIVPK 454
>gi|393781777|ref|ZP_10369971.1| DNA repair protein RadA [Bacteroides salyersiae CL02T12C01]
gi|392676381|gb|EIY69819.1| DNA repair protein RadA [Bacteroides salyersiae CL02T12C01]
Length = 455
Score = 347 bits (891), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 190/470 (40%), Positives = 284/470 (60%), Gaps = 22/470 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T +VCS+CG +W G C +C G Y + P +R + + +PV L
Sbjct: 5 KTVYVCSNCGQESPKWVGKCPSC---GEWNTYVEEIIRKEPANRRPVSGIETAKAKPVTL 61
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
E+ + P + E+ RVLGGGLVPGSLVLIGG+PG+GKSTL+LQ +
Sbjct: 62 SEIEADDE------PRIDMHDEELNRVLGGGLVPGSLVLIGGEPGIGKSTLVLQTVLRMP 115
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+ V+Y+SGEES Q+ RADR+ A+ + + T +E I ++ P +
Sbjct: 116 ERR-------VLYISGEESARQLKLRADRLTSASSDCLIVCETSLEQIYVHIKNTRPDLV 168
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDS+QT+ + S G + QV+EC++++LRFAK+T+ PVLL GH+ K G IAGP+VLE
Sbjct: 169 IIDSVQTISTENIESSPGSIAQVRECSASILRFAKETHTPVLLIGHINKEGSIAGPKVLE 228
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
HIVD VL EG++ YR+LRS+KNRFGST ELG++EM Q GL+ VSNPS++ LS+ H
Sbjct: 229 HIVDTVLQFEGDQHYMYRILRSIKNRFGSTAELGIYEMRQDGLRQVSNPSELLLSQDH-- 286
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
E ++G+A+A ++G R FLIE QAL S R G R +M+++VL K+ G
Sbjct: 287 -EGMSGVAIASAIEGVRPFLIETQALVSSAVYGNPQRSATGFDIRRMNMLLAVLEKRVGF 345
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
KL + +FLN+ G+ + + A DLAV ++I SS ++ I + GEIGL GE+R V+R
Sbjct: 346 KLAQKDVFLNIAGGLKVNDPAIDLAVISSILSSNMDAAIEPEVCMAGEIGLSGEIRPVNR 405
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+E+R+ KLG+++ ++PK + + T ++E + + ++E +F
Sbjct: 406 IEQRIGEAEKLGFKRFLLPKYNLQGIETKKL-KIELVPVRKVEEAFRALF 454
>gi|389575962|ref|ZP_10165990.1| DNA repair protein RadA [Eubacterium cellulosolvens 6]
gi|389311447|gb|EIM56380.1| DNA repair protein RadA [Eubacterium cellulosolvens 6]
Length = 461
Score = 347 bits (891), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 196/484 (40%), Positives = 287/484 (59%), Gaps = 38/484 (7%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVV-------QRTWLPQ 162
K ++ + C +CGY +W G C C T + E G ++ P+
Sbjct: 2 KEKKSIFFCQNCGYESAKWMGQCPGCHEWNTFVEETVSEKKAGKRTSSASGRGEKDLRPK 61
Query: 163 KPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKST 222
E+ + G+ +LD RVLGGG+V G+L+LIGGDPG+GKST
Sbjct: 62 TLSEIDLTAGHRMETGIGELD--------------RVLGGGIVKGALMLIGGDPGIGKST 107
Query: 223 LLLQMAAIIAD--VHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDI 280
LLLQ+ ++D VH V+YVSGEES++QI RA R+ T+ L LY TD++DI
Sbjct: 108 LLLQVCRELSDKGVH-------VLYVSGEESLQQIKLRALRIGTFTDNLKLYCETDLDDI 160
Query: 281 VEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVT 340
++ P ++IDSIQT+Y V+ S G + QV+E T+ LLR AK +PV + GHVT
Sbjct: 161 QRVIENDKPELVVIDSIQTMYNEAVSSSPGSVSQVRETTAVLLRMAKTLQVPVFIVGHVT 220
Query: 341 KSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSN 400
K G++AGPRVLEH+VD VLY EG++ SYR+LR+ KNRFGST+E+GVFEM GL+ V N
Sbjct: 221 KDGNVAGPRVLEHMVDTVLYFEGDRNQSYRILRAAKNRFGSTNEIGVFEMRSGGLEEVKN 280
Query: 401 PSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVS---RHVNGIQASRA 457
PS+ L + D+ +G VA M+GSR +IEIQAL VS + + R NG +R
Sbjct: 281 PSEYMLDGRPEDA---SGSVVACSMEGSRPIMIEIQAL-VSRTNFNFPRRTANGTDFNRV 336
Query: 458 DMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIG 517
+++++VL K+A + L ++ ++N+ GV ++E A DLA+ A+ SS+ + P+P G
Sbjct: 337 NLLMAVLEKRARINLSQSDAYINITGGVRMSEPAVDLAIILALASSYKDIPVPADTVAFG 396
Query: 518 EIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFE-QMEFIGCKNLKEVI 576
E+GL GE+R V+ E+RV AKLG+ K I+P + +SL L E ++ +N++E I
Sbjct: 397 EVGLSGEIRSVTMAEQRVREAAKLGFGKVILPNACMRSLEKLQGELKIRMYPVRNVREAI 456
Query: 577 NVVF 580
+ +
Sbjct: 457 DCML 460
>gi|116513016|ref|YP_811923.1| DNA repair protein RadA [Lactococcus lactis subsp. cremoris SK11]
gi|125625104|ref|YP_001033587.1| DNA repair protein RadA [Lactococcus lactis subsp. cremoris MG1363]
gi|389855489|ref|YP_006357733.1| DNA repair protein RadA [Lactococcus lactis subsp. cremoris NZ9000]
gi|414075081|ref|YP_007000298.1| DNA repair protein RadA [Lactococcus lactis subsp. cremoris
UC509.9]
gi|116108670|gb|ABJ73810.1| DNA replication and repair protein RadA [Lactococcus lactis subsp.
cremoris SK11]
gi|124493912|emb|CAL98907.1| putative ATP-dependent protease [Lactococcus lactis subsp. cremoris
MG1363]
gi|300071911|gb|ADJ61311.1| DNA repair protein RadA [Lactococcus lactis subsp. cremoris NZ9000]
gi|413975001|gb|AFW92465.1| DNA repair protein RadA [Lactococcus lactis subsp. cremoris
UC509.9]
Length = 453
Score = 347 bits (891), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 194/471 (41%), Positives = 281/471 (59%), Gaps = 26/471 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
++++VC +CGY ++ G C C + + + V + KP ++ V L
Sbjct: 5 KSSFVCQNCGYKSAKYLGRCPNCGEWSSFVEEVEVQEVKNQRVSMSGERSKPMKLDEVEL 64
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
+ + LD E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++
Sbjct: 65 FDTPRIETDLD-----------EFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVST--- 110
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
L V+YVSGEES +QI RA+R+ + +LY+ T+++ I +V+ L P L
Sbjct: 111 ---QLASRGRVLYVSGEESAQQIKLRAERLGDIDRDFYLYAETNMQSIRAEVERLKPNFL 167
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQT+ + + G + QV+E T L++ AK +I + GHVTK G +AGPR+LE
Sbjct: 168 IIDSIQTIMTPEIQSTQGSVSQVREVTGELMQIAKTNDIATFIVGHVTKEGQLAGPRMLE 227
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EGE+ +++R+LR+VKNRFGST+E+G+FEM GL V+NPS++FL E+
Sbjct: 228 HMVDTVLYFEGERNNTFRILRAVKNRFGSTNEIGIFEMQGHGLVEVTNPSEVFLEERLEG 287
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
S G A+ ++G+R L+EIQAL R +G+ +R +I++VL K+ GL
Sbjct: 288 S---TGSAIVCALEGTRPILVEIQALTTPTMFGNAKRTTSGLDFNRVSLIMAVLEKRTGL 344
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
+Q +L GV L E A DLAVA A+ SS+ E P FIGEIGL GE+R V+R
Sbjct: 345 LMQNQDAYLKSAGGVKLDEPAIDLAVAVAVASSYKELPTDARECFIGEIGLTGEIRRVTR 404
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGF-EQMEFIGCKNLKEVINVVF 580
+E+R++ AKLG++K PK+ S+ + EQ++ IG L E + +VF
Sbjct: 405 IEQRLNEAAKLGFKKVYAPKN---SIVGIDIPEQIKVIGVTTLTECLKLVF 452
>gi|340346249|ref|ZP_08669374.1| DNA repair protein RadA [Prevotella dentalis DSM 3688]
gi|433651432|ref|YP_007277811.1| DNA repair protein RadA [Prevotella dentalis DSM 3688]
gi|339611706|gb|EGQ16523.1| DNA repair protein RadA [Prevotella dentalis DSM 3688]
gi|433301965|gb|AGB27781.1| DNA repair protein RadA [Prevotella dentalis DSM 3688]
Length = 470
Score = 347 bits (891), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 192/482 (39%), Positives = 285/482 (59%), Gaps = 30/482 (6%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEV---- 167
++T +VCS CGY +W G C +C T K + + + +
Sbjct: 5 DKTMYVCSHCGYESAKWLGKCPSCGEWSTFKEIKVAAGSGTHAARNAAMTLRRGDTVAHA 64
Query: 168 ------QPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKS 221
+PVRL E++ + P E+ RVLGGG+VPGS+VL+GG+PG+GKS
Sbjct: 65 HAGSASRPVRLQEISSRDE------PRIDTHDAELNRVLGGGIVPGSIVLLGGEPGIGKS 118
Query: 222 TLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIAT-EELFLYSSTDIEDI 280
TL LQ + + ++YVSGEES QI RA+R+ A + +F+ T +E +
Sbjct: 119 TLTLQTILAMPE-------RRILYVSGEESAHQIKMRAERLNPAHPDSIFILCETSLEHV 171
Query: 281 VEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVT 340
V+ + P ++IDSIQT+ V S G + QV+EC +ALLRFAK + +PV+L GH+
Sbjct: 172 FSHVEEVRPELVVIDSIQTMATETVDSSPGSVTQVRECAAALLRFAKTSGVPVVLIGHIN 231
Query: 341 KSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSN 400
K G +AGP++LEHIVD V+ EG++ YR+LRS+KNRFGST ELG++EM Q GL+ VSN
Sbjct: 232 KEGTLAGPKILEHIVDTVVQFEGDQHYMYRILRSIKNRFGSTSELGIYEMRQDGLRQVSN 291
Query: 401 PSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRAD 458
PS++ L+E H E L+G+A++ ++G R FL+E QAL S + T R G R +
Sbjct: 292 PSELLLTEDH---EGLSGVAISSAIEGVRPFLVETQALVSSAAYGTPQRSATGFDQRRLN 348
Query: 459 MIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGE 518
M+++VL K+ G KL + +FLN+ G+ +T+ A DL+V AA+ SS ++ PI G GE
Sbjct: 349 MLLAVLEKRVGFKLMQKDVFLNIAGGLRVTDMAMDLSVIAAVLSSNVDTPIEPGWCMCGE 408
Query: 519 IGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINV 578
+GL GE+R VSR+E+R++ KLG+ I+P KSL F +E + ++E +
Sbjct: 409 VGLSGEVRPVSRVEQRIAEAEKLGFGHIILPAYHLKSLNAHRF-SIELHPVRKVEEALRA 467
Query: 579 VF 580
+F
Sbjct: 468 LF 469
>gi|301058274|ref|ZP_07199314.1| DNA repair protein RadA [delta proteobacterium NaphS2]
gi|300447608|gb|EFK11333.1| DNA repair protein RadA [delta proteobacterium NaphS2]
Length = 455
Score = 347 bits (891), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 193/442 (43%), Positives = 277/442 (62%), Gaps = 26/442 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T++VC +CGY +W G C C+ G++ + E RT + +PE + + L
Sbjct: 6 KTHYVCQNCGYEALKWLGRCPECDQWGSLLEMNGARRREH--AGRTAM-SRPECIDAISL 62
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
+ W SG+ E R LGGGLVPGSLVLIGGDPG+GKST++LQ ++
Sbjct: 63 ------SPETRWE---SGI--AEFDRTLGGGLVPGSLVLIGGDPGIGKSTMILQ---VLG 108
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
G S +Y+SGEES +QI RADR+ I ++L++ + T IED + + L P L
Sbjct: 109 GFAHRGLKS--LYLSGEESAQQIKMRADRLNIRAKQLYVLTGTCIEDFFTQAEELKPHLL 166
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
+DSIQT Y + V G + QV+E + L+ FAK + IPV L GHVTK G IAGP+VLE
Sbjct: 167 AVDSIQTFYTQDVPSPPGSVSQVRETAARLMAFAKSSGIPVFLVGHVTKDGAIAGPKVLE 226
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EG++ ++R+LR+VKNR+GST+E+GVFEM GL VSNPS IFL+E+ D
Sbjct: 227 HLVDTVLYFEGDRGHAFRILRAVKNRYGSTNEIGVFEMKNSGLAEVSNPSGIFLAERPED 286
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVS---RHVNGIQASRADMIISVLMKQAG 469
+ G A+ M+G+R L+EIQAL VS S + R GI+ +R ++++VL K+ G
Sbjct: 287 ---VPGSAIISCMEGTRPLLVEIQAL-VSHSPLGMPRRTARGIEQNRISLLVAVLAKRLG 342
Query: 470 LKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVS 529
++L + IF+NV G+ + E A DL + +AI SSFLE P+ + GE+GL GE+R VS
Sbjct: 343 MELGDQDIFVNVAGGLKIDEPAADLGIVSAIMSSFLEKPVNRNLVVFGEVGLAGEIRGVS 402
Query: 530 RMEKRVSTVAKLGYRKCIVPKS 551
+ + R+ + K+G+ C++PKS
Sbjct: 403 QPDMRMKEIEKMGFTTCLLPKS 424
>gi|442803755|ref|YP_007371904.1| DNA repair protein RadA [Clostridium stercorarium subsp.
stercorarium DSM 8532]
gi|442739605|gb|AGC67294.1| DNA repair protein RadA [Clostridium stercorarium subsp.
stercorarium DSM 8532]
Length = 451
Score = 347 bits (891), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 192/472 (40%), Positives = 286/472 (60%), Gaps = 26/472 (5%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKP-EEVQPV 170
++T +VCS+CGY +W G C +C T E+ +G V+R P E+
Sbjct: 3 SKTKFVCSECGYETRKWLGRCPSCLQWNTFLEEPESET-KGNSVERALPKAIPLTEISWE 61
Query: 171 RLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAI 230
+ GM++LD RVLGGG+V GSLVL+GGDPG+GKSTLLLQ+ +
Sbjct: 62 TERRITTGMQELD--------------RVLGGGIVDGSLVLVGGDPGIGKSTLLLQVCGV 107
Query: 231 IADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPR 290
++ + ++YVSGEESV+QI RA+R+ + +E + + + T E+I + ++ ++P
Sbjct: 108 LSRNSGM----KILYVSGEESVKQIKIRAERLSVNSENILMVTETCFENISKLIEEINPH 163
Query: 291 ALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRV 350
+I+DSIQTVY ++ + G + QV+E T L+R AK + V + GHVTK G IAGPRV
Sbjct: 164 VVILDSIQTVYSELLSSAPGSVSQVREVTGQLMRIAKGRGVTVFIVGHVTKEGAIAGPRV 223
Query: 351 LEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQH 410
LEH+VD VLY EGE+ +YR+LR+VKNRFGST+E+G+FEM+Q GL+ V+NPS +FL +
Sbjct: 224 LEHMVDTVLYFEGERHQNYRILRAVKNRFGSTNEIGLFEMTQYGLKEVNNPSGLFLDSRA 283
Query: 411 SDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQA 468
D G + ++G+R L+EIQAL R GI +R M+++VL K+
Sbjct: 284 KDQ---PGSVIVASLEGTRPMLLEIQALVTPTVFGIARRMATGIDYNRMTMLMAVLEKRI 340
Query: 469 GLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMV 528
G+ L + ++NVV G+ + E A DL V A+I SF P+ I +GE+GL GE+R V
Sbjct: 341 GMPLYNHDAYVNVVGGIHIDEPACDLGVVASIAGSFKNQPVDPDIVVVGEVGLTGEVRPV 400
Query: 529 SRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
++ +KR+ +LG+RKC+VP S KS A + +E I ++E + +F
Sbjct: 401 NQADKRIMEAKRLGFRKCLVP-SGNKSSALENIDGIEIIFAGTVEEALAYLF 451
>gi|322374138|ref|ZP_08048672.1| DNA repair protein RadA [Streptococcus sp. C150]
gi|321277104|gb|EFX54175.1| DNA repair protein RadA [Streptococcus sp. C150]
Length = 466
Score = 347 bits (891), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 190/447 (42%), Positives = 271/447 (60%), Gaps = 22/447 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
++ +VC +CGY ++ G C C S + + + + V T KP +++ V
Sbjct: 18 KSTFVCRECGYNSPKYLGRCPNCSSWSSFEEEVEVQEVKNARVSLTGEKSKPTKLKEVSS 77
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
+ + +D E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ +A
Sbjct: 78 INYARIKTDMD-----------EFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLA 126
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+ V+YVSGEES EQI R++R+ E +LY+ T+++ + +V+ + P L
Sbjct: 127 N------KGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQAVRSQVEAIKPDFL 180
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQT+ ++G G + QV+E T+ L++ AK NI + GHVTK G +AGPR+LE
Sbjct: 181 IIDSIQTIMSPEISGVQGSVSQVREVTAELMQIAKTNNIATFIVGHVTKEGQLAGPRMLE 240
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS++FL E+
Sbjct: 241 HMVDTVLYFEGERHHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDG 300
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
+ G A+ V M+GSR L E+QAL R G+ +R +I++VL K+ GL
Sbjct: 301 A---TGSAIVVTMEGSRPILAEVQALVTPTVFGNAKRTTTGLDFNRVSLIMAVLEKRCGL 357
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ +L GV L E A DLAVA AI SS+ E P AFIGEIGL GE+R V+R
Sbjct: 358 LLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKELPTNPQEAFIGEIGLTGEIRRVTR 417
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLA 557
+E+R++ AKLG+ + PK++ +A
Sbjct: 418 IEQRINEAAKLGFTRIYAPKNSLHGMA 444
>gi|237708509|ref|ZP_04538990.1| DNA repair protein RadA [Bacteroides sp. 9_1_42FAA]
gi|423239751|ref|ZP_17220867.1| DNA repair protein RadA [Bacteroides dorei CL03T12C01]
gi|229457438|gb|EEO63159.1| DNA repair protein RadA [Bacteroides sp. 9_1_42FAA]
gi|392645791|gb|EIY39514.1| DNA repair protein RadA [Bacteroides dorei CL03T12C01]
Length = 455
Score = 347 bits (891), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 188/470 (40%), Positives = 285/470 (60%), Gaps = 22/470 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T +VC++CG +W G C +C G Y + P +R +P + +PV L
Sbjct: 5 KTVYVCTNCGQDSPKWVGKCPSC---GAWNTYVEEVVRKEPANKRPVSGLEPVKSKPVTL 61
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
++ G + P + E+ RVLGGGLVPGSLVL+GG+PG+GKSTL+LQ +
Sbjct: 62 NDITGGDE------PRIDMQDEELNRVLGGGLVPGSLVLLGGEPGIGKSTLVLQTVLHLP 115
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
D V+Y+SGEES Q+ RADR+ + + + T +E I ++ P +
Sbjct: 116 D-------RKVLYISGEESARQLKLRADRIPHNSSDCLIVCETSLEQIYIHIKNTQPDLV 168
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQT+ + S G L+QV+EC++++L+FAK+TN PV+L GH+ K G IAGP+VLE
Sbjct: 169 IIDSIQTISTETIDSSPGSLVQVRECSASILKFAKETNTPVILIGHINKEGSIAGPKVLE 228
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
HIVD VL EG++ YR+LRS+KNRFGST ELG++EM Q GL+ VSNPS++ LS+ H
Sbjct: 229 HIVDTVLQFEGDQHYMYRILRSIKNRFGSTAELGIYEMRQNGLRQVSNPSELLLSQDH-- 286
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
+ ++G+A+A ++G R FLIE QAL S R G R +M+++VL K+ G
Sbjct: 287 -DGMSGVAIASAIEGVRPFLIETQALVSSAVYGNPQRSATGFDLRRMNMLLAVLEKRVGF 345
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
KL + +FLN+ G+ + + A DL+V +AI SS ++ + GE+GL GE+R V+R
Sbjct: 346 KLAQKDVFLNIAGGLKVNDPAIDLSVISAILSSNMDTEVERDTCMAGEVGLSGEIRPVNR 405
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+E+R+ KLG+++ ++PK + + T ++E I + ++E +F
Sbjct: 406 IEQRIGEAEKLGFKRILIPKHNLQGMDTSKL-KIEIIPVRKVEEAFRALF 454
>gi|350270573|ref|YP_004881881.1| DNA repair protein RadA [Oscillibacter valericigenes Sjm18-20]
gi|348595415|dbj|BAK99375.1| DNA repair protein RadA [Oscillibacter valericigenes Sjm18-20]
Length = 464
Score = 347 bits (891), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 203/479 (42%), Positives = 290/479 (60%), Gaps = 33/479 (6%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQR-------TWLPQK-- 163
+T + C++CG +W G C AC + T+ A + P R + +P
Sbjct: 4 KTVFYCTECGNETPKWAGKCPACGAWNTVVERPA---EAAPKKSRGIGKAAASVIPAMGI 60
Query: 164 PEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTL 223
+PV LE + R P +G+ E+ RVLGGG V GSLVL+GG PG+GKSTL
Sbjct: 61 SHRARPVTDLETAS-----EIRFP-TGM--GELDRVLGGGAVKGSLVLVGGAPGIGKSTL 112
Query: 224 LLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEK 283
+LQ+ + L E S V+YVSGEES Q+ RA R+ + +E+LF+ S T + D++E
Sbjct: 113 MLQICS------KLCEFSKVLYVSGEESEHQLKLRAKRLDVESEQLFVISETCLGDVLET 166
Query: 284 VQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSG 343
V P LIIDSIQT+Y + AG + QVK+CT AL++ AK I V + GHV K G
Sbjct: 167 VAEEQPDILIIDSIQTLYNDALESPAGSVGQVKDCTMALMQLAKGREITVFVIGHVNKEG 226
Query: 344 DIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSK 403
IAGP+VLEH+VD VLY EG++ SSYR+LR+ KNRFG+T+E+GVFEM GL V NPS+
Sbjct: 227 SIAGPKVLEHMVDCVLYFEGDQHSSYRILRAAKNRFGATNEIGVFEMEDAGLHEVENPSE 286
Query: 404 IFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMII 461
+ L+ + +D+ G V +M+G R L EIQAL S T R NG +RA M+I
Sbjct: 287 MLLAGRPADA---PGTCVTCVMEGVRPVLAEIQALIAPSSYGTPRRTSNGFDYNRAAMLI 343
Query: 462 SVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGL 521
+VL K+ GLKL +LN++ G+ L E A DLA + A+ SS+L+ PIP+ + IGE+GL
Sbjct: 344 AVLEKRGGLKLSTCDTYLNIIGGLWLDEPAADLAASVALASSYLDQPIPSDLVAIGEVGL 403
Query: 522 GGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
GELR VS++ +R++ V +LG+++C++P+ ++L +E I +N+ E + V
Sbjct: 404 TGELRSVSQLSQRINEVQRLGFKRCLIPEHRSQTLHAP--SGLELIPVRNIGEALRAVM 460
>gi|423302888|ref|ZP_17280910.1| DNA repair protein RadA [Bacteroides finegoldii CL09T03C10]
gi|408470764|gb|EKJ89298.1| DNA repair protein RadA [Bacteroides finegoldii CL09T03C10]
Length = 465
Score = 347 bits (891), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 192/481 (39%), Positives = 292/481 (60%), Gaps = 25/481 (5%)
Query: 105 TRKKGKA---NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLP 161
T KKG + +T +VCS+CG +W G C +C G Y + PV +R
Sbjct: 4 TTKKGSSMAKEKTVYVCSNCGQDSPKWVGKCPSC---GEWNTYVEEIVRKEPVNRRPVSG 60
Query: 162 QKPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKS 221
+ ++ +P+ L ++ + P + +E+ RVLGGGLVPGSLVLIGG+PG+GKS
Sbjct: 61 IETQKPKPLALADIVADDE------PRINMHDDELNRVLGGGLVPGSLVLIGGEPGIGKS 114
Query: 222 TLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIV 281
TL++Q + + ++YVSGEES Q+ RADR+ + + + T +E I
Sbjct: 115 TLVMQTVLHMPE-------KKILYVSGEESARQLKLRADRLSSISSDCLIVCETSLEQIY 167
Query: 282 EKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTK 341
++ +P +IIDSIQT+ + S G + QV+EC++++LRFAK+T+ PVLL GH+ K
Sbjct: 168 VHIKNTNPDLVIIDSIQTISTESIESSPGSIAQVRECSASILRFAKETHTPVLLIGHINK 227
Query: 342 SGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNP 401
G IAGP+VLEHIVD VL EG++ YR+LRS+KNRFGST ELG++EM Q GL+ VSNP
Sbjct: 228 EGSIAGPKVLEHIVDTVLQFEGDQHYMYRILRSIKNRFGSTAELGIYEMRQDGLRQVSNP 287
Query: 402 SKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADM 459
S++ LS+ H E ++G+A+A ++G R FLIE QAL S R G R +M
Sbjct: 288 SELLLSQDH---EGMSGVAIASAIEGIRPFLIETQALVSSAVYGNPQRSATGFDLRRMNM 344
Query: 460 IISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEI 519
+++VL K+ G KL + +FLN+ G+ + + A DL+V +AI SS ++ I + GEI
Sbjct: 345 LLAVLEKRVGFKLAQKDVFLNIAGGLKVNDPAIDLSVISAILSSNMDAAIEPEVCMAGEI 404
Query: 520 GLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVV 579
GL GE+R V+R+E+R+ KLG+++ ++PK + + T ++E + + ++E +
Sbjct: 405 GLSGEIRPVNRIEQRIGEAEKLGFKRFLLPKYNLQGIDTQKL-KIELVPVRKVEEAFRAL 463
Query: 580 F 580
F
Sbjct: 464 F 464
>gi|221633019|ref|YP_002522244.1| DNA repair protein RadA [Thermomicrobium roseum DSM 5159]
gi|221156560|gb|ACM05687.1| DNA repair protein RadA [Thermomicrobium roseum DSM 5159]
Length = 470
Score = 347 bits (890), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 208/446 (46%), Positives = 274/446 (61%), Gaps = 23/446 (5%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVR 171
RT WVC CG ++G C +C + GTM + + + T P +E+ V
Sbjct: 8 RRTVWVCQSCGLESSGYYGRCPSCGAWGTMVEQAVDATPATGDAKGTGAPV--QELSRVT 65
Query: 172 LLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAII 231
E + L R P E RVLGGGLVPG+LVL+GGDPG+GKSTLLLQ A +
Sbjct: 66 SAERTR----LSLRSP-------EFDRVLGGGLVPGALVLLGGDPGIGKSTLLLQAALRL 114
Query: 232 ADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRA 291
A E V+YV+ EES EQI RADR+ ++ + + + T ++ +E Q L P
Sbjct: 115 AS-----EGLRVLYVAAEESPEQIRLRADRLGKTSDGVLILAETALDRAIEIAQELDPAI 169
Query: 292 LIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVL 351
LI+DSIQTV+L S G + QV++CT+ LL+FAK+ PV L GHVTK G IAGPRV+
Sbjct: 170 LIVDSIQTVFLSSSESSPGSVSQVRDCTAQLLQFAKRARTPVFLVGHVTKEGLIAGPRVV 229
Query: 352 EHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHS 411
EH+VD VLY+EGE+F +RLLR+ KNRFGST+E+GVFEM+ GL VSNPS +FL+E+ S
Sbjct: 230 EHMVDVVLYLEGERFHQHRLLRAAKNRFGSTNEIGVFEMTDSGLLDVSNPSALFLAERAS 289
Query: 412 DSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAG 469
+ AG AV V ++G+R LIE+QAL S T R G A+R ++++VL K AG
Sbjct: 290 HA---AGSAVVVTLEGTRPILIEVQALTSSAGYGTPRRIATGFDATRLQVLVAVLSKHAG 346
Query: 470 LKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVS 529
LKL E +F+NV G L E A DL VA AI SS P+ + FIGE+GL GE+R V
Sbjct: 347 LKLGEQDVFVNVTGGYRLVEPAADLGVALAIASSASGLPLDDDAVFIGELGLAGEVRSVH 406
Query: 530 RMEKRVSTVAKLGYRKCIVPKSAEKS 555
+E+R+ A+LG+R VP SA S
Sbjct: 407 GLERRLQEAARLGFRSAYVPASARIS 432
>gi|418962222|ref|ZP_13514094.1| DNA repair protein RadA [Streptococcus anginosus subsp. whileyi
CCUG 39159]
gi|383346157|gb|EID24225.1| DNA repair protein RadA [Streptococcus anginosus subsp. whileyi
CCUG 39159]
Length = 465
Score = 347 bits (890), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 200/471 (42%), Positives = 283/471 (60%), Gaps = 26/471 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+ +VC +C Y ++ G C C G + E E ++ + E+ +P++L
Sbjct: 17 KATFVCQNCEYHSSKYLGRCPNC---GAWSSFV--EEVEVTEIKNARVSLTGEKSRPMKL 71
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
EV L+ + ++ E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++
Sbjct: 72 AEVT----SLNVNRTKTDMY--EFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVST--- 122
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
L V+YVSGEES EQI RA+R+ E +LY+ T+++ I +++ + P L
Sbjct: 123 ---QLSHKGTVLYVSGEESAEQIKLRAERLGDIDSEFYLYAETNMQSIRAEIEKIKPDFL 179
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQT+ ++ G + QV+E T+ L++ AK NI + + GH+TK G +AGPR LE
Sbjct: 180 IIDSIQTILSPEISSVQGSVSQVREVTAELMQLAKTNNIAIFIVGHMTKEGTLAGPRTLE 239
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS++FL E+
Sbjct: 240 HMVDTVLYFEGERQHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDG 299
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
+ G ++ V M+G+R L E+QAL T R G+ +RA +I++VL K+AGL
Sbjct: 300 A---TGSSIVVTMEGTRPILAEVQALVTPTMFGTAKRTTTGLDFNRASLIMAVLEKRAGL 356
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ +L GV L E A DLAVA AI SS+ + P FIGEIGL GE+R V+R
Sbjct: 357 LLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDLPTNPQECFIGEIGLTGEIRRVNR 416
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGF-EQMEFIGCKNLKEVINVVF 580
+E+R++ AKLG+ K PK+ SL L E +E IG + EV+ VF
Sbjct: 417 IEQRINEAAKLGFTKVYAPKN---SLNGLNIPENIEVIGVTTIGEVLKKVF 464
>gi|408790759|ref|ZP_11202372.1| DNA repair protein RadA [Lactobacillus florum 2F]
gi|408519948|gb|EKK20061.1| DNA repair protein RadA [Lactobacillus florum 2F]
Length = 460
Score = 347 bits (890), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 194/470 (41%), Positives = 284/470 (60%), Gaps = 22/470 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T + CS+CGY + G C C T + + + G V T + ++VQP +
Sbjct: 5 KTQFSCSNCGYMSPTYLGRCPNCGEWNTFVEETIAKENTG-AVNPTRVNFSGKQVQPQLI 63
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
+VN P + E+ RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ ++
Sbjct: 64 DQVNAAAA------PRFTVGSQELNRVLGGGIVPGSLVLIGGDPGIGKSTLLLQVSGELS 117
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMI-ATEELFLYSSTDIEDIVEKVQPLSPRA 291
+ V+YV+GEES +Q+ RADR+ I E+L+++ TD+ I + + L P
Sbjct: 118 QLQ-----KRVLYVTGEESADQVKMRADRLQIPQNEDLYVFPETDMTAIRDAIADLKPNV 172
Query: 292 LIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVL 351
+I+DS+QT+ V + G + QV+ TS L+ AK NI + + GHVTK G IAGP+ L
Sbjct: 173 VIVDSVQTMQESTVTSAIGSVAQVRGVTSDLMNIAKTNNITIFIVGHVTKGGAIAGPKTL 232
Query: 352 EHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHS 411
EH+VD VLY EG++ +YRLLR+VKNRFGST+ELG+FEM+ GLQ V NPS+IFL E+
Sbjct: 233 EHMVDTVLYFEGDQHHAYRLLRAVKNRFGSTNELGIFEMADHGLQEVQNPSEIFLEERLK 292
Query: 412 DSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAG 469
++ G A+ V M+G+R L+E+QAL R +G+ +R +I++VL K+AG
Sbjct: 293 NA---TGSAIVVAMEGTRPILVELQALITPSVFGNAQRTASGVDRNRVSLIMAVLEKRAG 349
Query: 470 LKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVS 529
L LQ +L GV L E A DLA+A +I SS+ + +IGE+GL GE+R V
Sbjct: 350 LLLQNQDAYLKAAGGVKLNEPAIDLAMAISIASSYEDISTDVKECYIGELGLTGEVRRVD 409
Query: 530 RMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQ-MEFIGCKNLKEVINV 578
R+E+R+ AKLG+++ +VPK +L + Q ++ +G LKE + +
Sbjct: 410 RIEQRLREAAKLGFKRVLVPK---HNLDLVEIPQGLQVVGVTTLKEALQL 456
>gi|427387418|ref|ZP_18883474.1| DNA repair protein RadA [Bacteroides oleiciplenus YIT 12058]
gi|425725579|gb|EKU88450.1| DNA repair protein RadA [Bacteroides oleiciplenus YIT 12058]
Length = 455
Score = 347 bits (890), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 195/476 (40%), Positives = 286/476 (60%), Gaps = 34/476 (7%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKP------EE 166
+T +VC++CG +W G C +C G Y +V++ + ++P E+
Sbjct: 5 KTVYVCTNCGQDSPKWIGKCPSC---GEWNTYVE------EIVRKEVVNKRPVSGIETEK 55
Query: 167 VQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQ 226
+PV L E+ + P L E+ RVLGGGLVPGSLVLIGG+PG+GKSTL+LQ
Sbjct: 56 PKPVILSEIEADDE------PRINLHDEELNRVLGGGLVPGSLVLIGGEPGIGKSTLVLQ 109
Query: 227 MAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQP 286
I + V+YVSGEES Q+ RADR+ + + T +E I ++
Sbjct: 110 TVLHIPEKR-------VLYVSGEESARQLKLRADRLSQNPTDCLIVCETSLEQIFVHIKN 162
Query: 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIA 346
P +IIDSIQT+ + S G + QV+EC++++LRFAK+T+ PVLL GH+ K G IA
Sbjct: 163 TRPDLVIIDSIQTISTESIESSPGSIAQVRECSASILRFAKETHTPVLLIGHINKEGSIA 222
Query: 347 GPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFL 406
GP+VLEHIVD VL EG++ YR+LRS+KNRFGST ELG++EM Q GL+ VSNPS++ L
Sbjct: 223 GPKVLEHIVDTVLQFEGDQHYMYRILRSIKNRFGSTAELGIYEMRQDGLRQVSNPSELLL 282
Query: 407 SEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVL 464
S+ H E ++G+A+A ++G R FLIE QAL S R G R +M+++VL
Sbjct: 283 SQDH---EGMSGVAIASAIEGIRPFLIETQALVSSAVYGNPQRSATGFDLRRMNMLLAVL 339
Query: 465 MKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGE 524
K+ G KL + +FLN+ G+ + + A DLAV +AI SS ++ I + GEIGL GE
Sbjct: 340 EKRVGFKLAQKDVFLNIAGGLKVNDPAIDLAVISAILSSNMDTAIEQEVCMAGEIGLSGE 399
Query: 525 LRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+R V+R+E+R+ KLG+++ ++PK + + T ++E I + ++E +F
Sbjct: 400 IRPVNRIEQRIGEAEKLGFKRFVLPKYNLQGIDTKKI-KIELIPVRKVEEAFRALF 454
>gi|374603228|ref|ZP_09676210.1| DNA repair protein RadA [Paenibacillus dendritiformis C454]
gi|374391097|gb|EHQ62437.1| DNA repair protein RadA [Paenibacillus dendritiformis C454]
Length = 455
Score = 347 bits (890), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 200/470 (42%), Positives = 280/470 (59%), Gaps = 22/470 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T + C+DCGY +W G C C TM V T L E+ Q +
Sbjct: 5 KTKFFCTDCGYESPKWMGKCPGCGEWNTMVEERETVVKTAGV--HTSLIGTKEKPQSIIQ 62
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
+E +K +L I +E+ RVLGGG+VPGSL+L+GGDPG+GKSTLLLQ + +A
Sbjct: 63 IE-SKQEARLSTTI-------DELNRVLGGGVVPGSLILVGGDPGIGKSTLLLQASNALA 114
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
V+YVSGEES Q RADR+ + +E LF+ S T+++ I E ++ +SP L
Sbjct: 115 -----ASGLKVLYVSGEESTRQTKLRADRLGVLSERLFVLSETNLQYIEEAIEAMSPDFL 169
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
+IDSIQTVY V + G + QV+ECTS +R AK I +L GHVTK G IAGPR+LE
Sbjct: 170 VIDSIQTVYQPSVESAPGSVAQVRECTSVCMRIAKGRGIATVLVGHVTKEGAIAGPRMLE 229
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EGE+ SYR+LR+VKNRFGST+E+G+FEM++ GL V NPS++FL E+
Sbjct: 230 HMVDCVLYFEGERHHSYRILRAVKNRFGSTNEIGIFEMTEGGLTEVKNPSEMFLQERPLG 289
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVS--RHVNGIQASRADMIISVLMKQAGL 470
++G V ++G+R L+E+QAL + + S R GI R +II+VL K+ G+
Sbjct: 290 ---VSGSTVVASLEGTRPVLVEMQALVSATNFPSPRRMSTGIDHQRLSLIIAVLEKRMGM 346
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ ++NV G+ L E A DLA+A A+ SSF + P GE+GL GE+R VSR
Sbjct: 347 FLQNQDAYVNVAGGLKLDEPAVDLAIAVALASSFRDMPTQAYDVVFGEVGLTGEVRAVSR 406
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
E+RV KLG+++ I+P+ + + G +E +G + E +
Sbjct: 407 AEQRVKEAEKLGFKRIILPEKSLRGWTPSG--HIEIVGVNTVAEALTAAL 454
>gi|335031985|ref|ZP_08525398.1| DNA repair protein RadA [Streptococcus anginosus SK52 = DSM 20563]
gi|333768267|gb|EGL45466.1| DNA repair protein RadA [Streptococcus anginosus SK52 = DSM 20563]
Length = 475
Score = 347 bits (890), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 197/471 (41%), Positives = 277/471 (58%), Gaps = 26/471 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T +VC +C Y ++ G C C + + + V T +P ++ V
Sbjct: 27 KTTFVCQNCEYHSPKYLGRCPNCGAWSSFVEEVEVTEVKNARVSLTGEKSRPMKLAEVTS 86
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
+ VN+ ++ E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++
Sbjct: 87 INVNRTKTDME-----------EFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVST--- 132
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
L V+YVSGEES EQI RA+R+ E +LY+ T+++ I +++ + P L
Sbjct: 133 ---QLSHKGTVLYVSGEESAEQIKLRAERLGDIDSEFYLYAETNMQSIRAEIEKIKPDFL 189
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQT+ ++ G + QV+E T+ L++ AK NI + GH+TK G +AGPR LE
Sbjct: 190 IIDSIQTILSPEISSVQGSVSQVREVTAELMQLAKTNNIATFIVGHMTKEGTLAGPRTLE 249
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS++FL E+
Sbjct: 250 HMVDTVLYFEGERQHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDG 309
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
+ G ++ V M+G+R L E+QAL R G+ +RA +I++VL K+AGL
Sbjct: 310 A---TGSSIVVTMEGTRPILAEVQALVTPTMFGNAKRTTTGLDFNRASLIMAVLEKRAGL 366
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ +L GV L E A DLAVA AI SS+ + P FIGEIGL GE+R V+R
Sbjct: 367 LLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDLPTNPQECFIGEIGLTGEIRRVNR 426
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGF-EQMEFIGCKNLKEVINVVF 580
+E+R++ AKLG+ K PK+ SL L E +E IG + EV+ VF
Sbjct: 427 IEQRINEAAKLGFTKVYAPKN---SLNGLNIPETIEVIGVTTIGEVLKKVF 474
>gi|222153779|ref|YP_002562956.1| DNA repair protein RadA [Streptococcus uberis 0140J]
gi|222114592|emb|CAR43585.1| putative DNA repair protein [Streptococcus uberis 0140J]
Length = 455
Score = 347 bits (890), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 191/442 (43%), Positives = 273/442 (61%), Gaps = 22/442 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+ +VC +CGY ++ G C C + + E E V+ + E+ +PV+L
Sbjct: 5 KATYVCQECGYQSPKYLGRCPNCSAWSSFI-----EEVEVKEVKNARVSLTGEKSRPVKL 59
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
+V+ +++ + + E RVLGGG+VPGSL+LIGGDPG+GKSTLLLQ++ +A
Sbjct: 60 KDVD----NINYARTKTDM--EEFNRVLGGGVVPGSLILIGGDPGIGKSTLLLQVSTQLA 113
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+ V+YVSGEES EQI R++R+ E +LY+ T+++ I +++ ++P L
Sbjct: 114 N------KGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQSIRSEIEKIAPDFL 167
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQT+ + G G + QV+E T+ L++ AK NI + GHVTK G IAGPR+LE
Sbjct: 168 IIDSIQTIMSPEIQGVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTIAGPRMLE 227
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS++FL E+
Sbjct: 228 HMVDTVLYFEGERHHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDG 287
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
+ G A+ V M+GSR L E+Q+L R G+ +R +I++VL K+ GL
Sbjct: 288 A---TGSAIVVTMEGSRPILAEVQSLVTPTVFGNARRTTTGLDFNRISLIMAVLEKRCGL 344
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ +L GV L E A DLAVA AI SS+ E P AF+GEIGL GE+R V+R
Sbjct: 345 LLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEMPTNPQEAFLGEIGLTGEIRRVTR 404
Query: 531 MEKRVSTVAKLGYRKCIVPKSA 552
ME+R++ AKLG+ K PK+A
Sbjct: 405 MEQRINEAAKLGFTKIYAPKNA 426
>gi|315301159|ref|ZP_07872429.1| DNA repair protein RadA, partial [Listeria ivanovii FSL F6-596]
gi|313630472|gb|EFR98335.1| DNA repair protein RadA [Listeria ivanovii FSL F6-596]
Length = 418
Score = 347 bits (890), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 192/444 (43%), Positives = 277/444 (62%), Gaps = 38/444 (8%)
Query: 109 GKANRTN-WVCSDCGYTDGQWWGMCRAC-------ESVGTMKRYSAGESDEGPVVQRTWL 160
KA RT +VC CGY +W G C C E++ K+ + + G + T +
Sbjct: 2 AKAKRTTKFVCQACGYESPKWMGKCPNCNEWNQMVEALEPSKKSRSAFNHTGEAAKATPI 61
Query: 161 PQKPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGK 220
Q E + +++ R+P E+ RVLGGG+VPGS+VL+GGDPG+GK
Sbjct: 62 TQIASEEEA-----------RVETRMP-------ELNRVLGGGVVPGSMVLVGGDPGIGK 103
Query: 221 STLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDI 280
STLLLQ++A + + V+Y+SGEES++Q RA+R+ ++ + L++Y+ T++E +
Sbjct: 104 STLLLQVSAQLTLTN-----KKVLYISGEESIKQTKLRAERLQVSGDNLYVYAETNLEAV 158
Query: 281 VEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVT 340
E + + P ++IDSIQTVY V +AG + QV+ECT+AL+R AK NI + + GHVT
Sbjct: 159 QETIDFVKPDFVVIDSIQTVYHPDVTSAAGSVSQVRECTAALMRIAKMQNIAIFIVGHVT 218
Query: 341 KSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSN 400
K G IAGPR+LEH+VD VLY EGE+ +YR+LR+VKNRFGST+E+G+FEM +GL V+N
Sbjct: 219 KEGAIAGPRLLEHMVDTVLYFEGERHHAYRILRAVKNRFGSTNEIGIFEMRDVGLVEVAN 278
Query: 401 PSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS---TVSRHVNGIQASRA 457
PS++FL E+ E +G V M+G+R L+EIQAL VS + R GI ++
Sbjct: 279 PSEVFLEERL---EGASGSTVVASMEGTRPVLVEIQAL-VSPTMFGNAKRMATGIDYNKV 334
Query: 458 DMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIG 517
+I++VL K+ GL LQ +L GV L E A DLAVA ++ SS+ + P + FIG
Sbjct: 335 SLIMAVLEKRVGLMLQNQDAYLKAAGGVKLDEPAVDLAVAVSVASSYRDKPTKSTDCFIG 394
Query: 518 EIGLGGELRMVSRMEKRVSTVAKL 541
E+GL GE+R V+R+E+RV AKL
Sbjct: 395 ELGLTGEIRRVARIEQRVQEAAKL 418
>gi|332800109|ref|YP_004461608.1| DNA repair protein RadA [Tepidanaerobacter acetatoxydans Re1]
gi|332697844|gb|AEE92301.1| DNA repair protein RadA [Tepidanaerobacter acetatoxydans Re1]
Length = 447
Score = 347 bits (890), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 196/469 (41%), Positives = 284/469 (60%), Gaps = 31/469 (6%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+ ++C CG +W G C C+S ++ E PV + + + + P ++ +
Sbjct: 4 KKRFICQQCGAVTPKWMGRCPECDSWNSIV-----EEKVLPVEKVSGVYKSPLNLKDIIY 58
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
E + + +D E+ RVLGGG+VPGSLVL+GGDPG+GKSTL+LQ+
Sbjct: 59 SEDERILTSID-----------ELDRVLGGGIVPGSLVLVGGDPGIGKSTLMLQICG--- 104
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+L + + V+YVSGEES +QI RADR+ I L++ + D+ I ++ L P
Sbjct: 105 ---NLSKKTSVLYVSGEESEKQIKLRADRLGIKDGALYILAENDMNIIEMAIKELRPDVA 161
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQTVY ++ G + Q++E T LR AK+T + + GHVTK G +AGP++LE
Sbjct: 162 IIDSIQTVYFPELSSGPGSVSQIREATVKCLRIAKETGSAIFIIGHVTKEGSLAGPKLLE 221
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD+VLY EGE++ SYRLLRSVKNRFGST+E+G+FEM GL VS+PSK LS + D
Sbjct: 222 HMVDSVLYFEGERYHSYRLLRSVKNRFGSTNEIGIFEMRDKGLVEVSSPSKYLLSGKPKD 281
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVS---RHVNGIQASRADMIISVLMKQAG 469
+ AG AV +++G+R L+E+QAL VS S + R +GI +RA ++I+VL K+ G
Sbjct: 282 T---AGSAVVCVLEGTRPLLVEVQAL-VSRSGFNLPRRQTSGIDYNRAALLIAVLEKKLG 337
Query: 470 LKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVS 529
L + IF+NV G+ + E DLAV A+ SSF P+ IGE+GL GE+R VS
Sbjct: 338 FMLAQEDIFINVAGGIKIEEPGADLAVELAVASSFKNRPVMEDTVIIGEVGLAGEVRAVS 397
Query: 530 RMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINV 578
+EKRV AKLG+ K I+P E ++ +++ G KN+KE + +
Sbjct: 398 HVEKRVQEAAKLGFSKAIIP--YENAIDMQKSPKIKIEGIKNVKEAVEI 444
>gi|319654840|ref|ZP_08008915.1| DNA repair protein radA [Bacillus sp. 2_A_57_CT2]
gi|317393403|gb|EFV74166.1| DNA repair protein radA [Bacillus sp. 2_A_57_CT2]
Length = 459
Score = 347 bits (890), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 195/479 (40%), Positives = 282/479 (58%), Gaps = 37/479 (7%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTM---------KRYSAGESDEGPVVQRTWLPQK 163
+T ++C +CGY +W G C C TM R A +G + P
Sbjct: 5 KTKFMCQECGYESPKWMGKCPGCGQWNTMVEEVEKPASTRRGAFAHSQGSAIAAKATPIT 64
Query: 164 PEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTL 223
++ V ++ + +L+ RVLGGG+V GSLVLIGGDPG+GKSTL
Sbjct: 65 --SIETVSEPRIHTDLIELN--------------RVLGGGIVRGSLVLIGGDPGIGKSTL 108
Query: 224 LLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEK 283
LLQ+++ +A+ V+Y+SGEES+ Q RADR+ ++++ L +YS T +++I
Sbjct: 109 LLQVSSQLAN-----RKHSVLYISGEESMRQTKLRADRLGVSSDNLLVYSETSLDEISRT 163
Query: 284 VQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSG 343
+ +SP +IIDSIQT++ V + G + QV+ECT+ L+R K I + + GHVTK G
Sbjct: 164 IDSVSPDFVIIDSIQTIFHPEVTSAPGSVSQVRECTAELMRIGKTKGIAIFIVGHVTKEG 223
Query: 344 DIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSK 403
IAGPR+LEH+VD VLY EGE+ +YR+LR+VKNRFGST+E+G+FEM + GL+ V+NPS+
Sbjct: 224 SIAGPRLLEHMVDTVLYFEGERHHTYRILRAVKNRFGSTNEMGIFEMKEFGLEEVANPSE 283
Query: 404 IFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMII 461
IFL E+ S+ AG V M+G+R L+EIQAL S R GI +R +++
Sbjct: 284 IFLEER---SQGAAGSTVVASMEGTRPVLVEIQALISPTSFGNPRRMATGIDHNRVPLLM 340
Query: 462 SVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGL 521
+VL K+ G+ LQ +L V GV L E A DLA+A +I SSF + P IGE+GL
Sbjct: 341 AVLEKRVGMLLQNQDAYLKVAGGVKLDEPAIDLAIAVSIASSFRDKPTKATDCIIGEVGL 400
Query: 522 GGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
GE+R VSR+E+RV AKLG+ + I+P + + G +E IG ++ E +
Sbjct: 401 TGEVRRVSRIEQRVQEAAKLGFERVILPANNLGGWSAPG--GIELIGVSSVGEALKAAL 457
>gi|116495776|ref|YP_807510.1| DNA repair protein RadA [Lactobacillus casei ATCC 334]
gi|116105926|gb|ABJ71068.1| DNA replication and repair protein RadA [Lactobacillus casei ATCC
334]
Length = 454
Score = 347 bits (890), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 193/470 (41%), Positives = 280/470 (59%), Gaps = 23/470 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T +VC +CGY + G C C T+ + S P KP + V +
Sbjct: 5 KTQYVCQNCGYISATYLGRCPNCGGWNTLVEETVSSSKSVPRQTAAGSKVKPTRMNDVTI 64
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
+ + LD E+ RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ +A
Sbjct: 65 TKETRVKTGLD-----------ELNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSGQLA 113
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+ V+YVSGEES QI RA R+ +A ++LY TD+ I + + + P +
Sbjct: 114 NTG-----GTVLYVSGEESASQIKMRAGRLGVANSGMYLYPETDMPSIEDVINQMQPDYV 168
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
+IDS+QT+ + + + G + Q++E T+ L+R AK + + + GHVTK G IAGP++LE
Sbjct: 169 VIDSVQTMNVPEMNSAVGSVTQIREVTAELMRIAKSKGVTIFIVGHVTKEGAIAGPKILE 228
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EG+ +YR+LRSVKNRFGST+E+G+FEM Q GLQ V+NPS+IFL E+ +
Sbjct: 229 HMVDTVLYFEGDMHHTYRILRSVKNRFGSTNEIGIFEMHQDGLQEVANPSEIFLEERLAG 288
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVLMKQAGL 470
+ G AV V M+G+R L+EIQAL R +G+ +R +I++VL K+A L
Sbjct: 289 A---TGSAVVVSMEGTRPILVEIQALISPTMYGNAKRTSSGLDHNRVSLIMAVLEKRANL 345
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ +L GV L E A DLA+A AI SS+ + I F+GEIGL GE+R V+R
Sbjct: 346 MLQNQDAYLKATGGVKLDEPAIDLAMAVAIASSYRDKEISPTDCFVGEIGLTGEVRRVNR 405
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+E+RV AKLG+++ VP++ + + ++ IG ++ E ++ VF
Sbjct: 406 IEERVKEAAKLGFKRIFVPRNNLQGWH--APKDIQVIGVTSIAEALHKVF 453
>gi|373859603|ref|ZP_09602329.1| DNA repair protein RadA [Bacillus sp. 1NLA3E]
gi|372450598|gb|EHP24083.1| DNA repair protein RadA [Bacillus sp. 1NLA3E]
Length = 451
Score = 347 bits (890), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 196/454 (43%), Positives = 275/454 (60%), Gaps = 51/454 (11%)
Query: 117 VCSDCGYTDGQWWGMCRAC----------ESVGTMKRYS-------AGESDEGPVVQRTW 159
+C +CGY +W G C C E VGT KR + AG S P+
Sbjct: 1 MCQECGYESPKWMGKCPGCGEWNKMVEEVEVVGTGKRGAFTHSQGLAGGSKATPITS--- 57
Query: 160 LPQKPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVG 219
++ + + +K+L+ RVLGGG+V GSLVLIGGDPG+G
Sbjct: 58 -------IETGTEVRIQTNLKELN--------------RVLGGGIVRGSLVLIGGDPGIG 96
Query: 220 KSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIED 279
KSTLLLQ+++ +A + V+Y+SGEES+ Q RA+R+ + +E L +Y+ T++++
Sbjct: 97 KSTLLLQVSSQLAV-----QGQSVLYISGEESLRQTKLRAERLGVTSENLLVYAETNLDE 151
Query: 280 IVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHV 339
I ++ +SP +IIDSIQTV+ V + G + QV+ECTS L+R K I V + GHV
Sbjct: 152 ISRTIESISPSFVIIDSIQTVFHPDVTSAPGSVSQVRECTSELMRIGKTKGIAVFIVGHV 211
Query: 340 TKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVS 399
TK G IAGPR+LEH+VD VLY EGE+ +YR+LR+VKNRFGST+E+G+FEM ++GL+ V
Sbjct: 212 TKEGSIAGPRLLEHMVDTVLYFEGERHHTYRILRAVKNRFGSTNEMGIFEMKEMGLEEVE 271
Query: 400 NPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRA 457
NPS+IFL E+ S+ AG V M+G+R L+EIQAL S R GI +R
Sbjct: 272 NPSEIFLEER---SQGAAGSTVVASMEGTRPVLVEIQALISPTSFGNPRRMATGIDHNRV 328
Query: 458 DMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIG 517
++++VL K+ G+ LQ +L V GV L E A DLAVA +I SSF + P IG
Sbjct: 329 SLLMAVLEKRVGMLLQNQDAYLKVAGGVKLDEPAIDLAVAVSIASSFRDSPTRATDCIIG 388
Query: 518 EIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKS 551
E+GL GE+R VSR+E+RV AKLG+ + I+P++
Sbjct: 389 EVGLTGEVRRVSRIEQRVQEAAKLGFERIILPEN 422
>gi|383812325|ref|ZP_09967763.1| DNA repair protein RadA [Prevotella sp. oral taxon 306 str. F0472]
gi|383354885|gb|EID32431.1| DNA repair protein RadA [Prevotella sp. oral taxon 306 str. F0472]
Length = 466
Score = 347 bits (890), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 193/480 (40%), Positives = 283/480 (58%), Gaps = 29/480 (6%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVR 171
++ +VCS+CG +W G C C T K +D G R Q ++
Sbjct: 4 DKIAYVCSNCGQESAKWIGKCPNCGQWNTFKEIRIA-ADTGTHAAR----QAATSLRHTN 58
Query: 172 LLEVNKGMKQLDWRI--------PLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTL 223
E G+ R+ P + +E+ RVLGGGLVPGS+VL+GG+PG+GKSTL
Sbjct: 59 AGEAVSGLANKPQRLRDVSAKDEPRMDMHDDELNRVLGGGLVPGSIVLLGGEPGIGKSTL 118
Query: 224 LLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIAT-EELFLYSSTDIEDIVE 282
LQ L ++YVSGEES QI RA+R+ E + + S T +E I E
Sbjct: 119 TLQTI--------LHLSQRILYVSGEESPHQIRMRAERITKDIPENIIILSETSLEHIFE 170
Query: 283 KVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKS 342
++ + P +++DSIQT+ V S G + QV+EC SALLRFAK + +PV+L GH+ K
Sbjct: 171 HIKDVKPELVVVDSIQTISTEDVDSSPGSVTQVRECASALLRFAKTSGVPVVLIGHINKE 230
Query: 343 GDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPS 402
G IAGP++LEHIVD V+ EG++ YR+LRS+KNRFGST ELG++EM Q GL+ VSNPS
Sbjct: 231 GSIAGPKILEHIVDTVIQFEGDQHYMYRILRSIKNRFGSTSELGIYEMEQQGLRQVSNPS 290
Query: 403 KIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMI 460
++ L+E H + L+G+A++ ++G R FL+E QAL S + T R G R +M+
Sbjct: 291 ELLLTEDH---DGLSGVAISSTIEGVRPFLVETQALVSSAAYGTPQRSATGFDQRRLNML 347
Query: 461 ISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIG 520
++VL K+ G KL + +FLN+ G+ +T+ A DL+V AA+ SS ++ PI G GE+G
Sbjct: 348 LAVLEKRVGFKLMQKDVFLNIAGGLRVTDMAMDLSVIAAVLSSNVDTPIEAGWCMCGEVG 407
Query: 521 LGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
L GE+R VSR+E+R++ KLG+ I+PK L G ++ + ++E + ++F
Sbjct: 408 LSGEVRPVSRIEQRIAEAEKLGFSHIIIPKYNMSGLT--GKYAIQLHPVRKVEEALRILF 465
>gi|116493241|ref|YP_804976.1| DNA repair protein RadA [Pediococcus pentosaceus ATCC 25745]
gi|421894078|ref|ZP_16324569.1| DNA repair protein RadA [Pediococcus pentosaceus IE-3]
gi|116103391|gb|ABJ68534.1| DNA replication and repair protein RadA [Pediococcus pentosaceus
ATCC 25745]
gi|385272906|emb|CCG89941.1| DNA repair protein RadA [Pediococcus pentosaceus IE-3]
Length = 456
Score = 347 bits (889), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 189/446 (42%), Positives = 278/446 (62%), Gaps = 29/446 (6%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTM--KRYSAGESDEGPVVQRTWLPQKPEEVQPV 170
+T ++CS+CGY ++ G C C T+ +R S +++ V KP+ + V
Sbjct: 5 KTQFLCSECGYVSPKFLGRCPNCGRWNTLVEERISEPKNERKSRVSFEGKSSKPQLISEV 64
Query: 171 RLLE---VNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQM 227
++ E V GM++L+ RVLGGG+V GSLVLIGGDPG+GKSTLLLQ+
Sbjct: 65 KMHEEPRVKTGMEELN--------------RVLGGGVVDGSLVLIGGDPGIGKSTLLLQL 110
Query: 228 AAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPL 287
+ +A V+YVSGEES QI RA+R+ + +E +LY TD+ +I ++ L
Sbjct: 111 SGQLAATD-----RDVLYVSGEESASQIKMRAERLQVNSERFYLYPETDMSNIRAVIEEL 165
Query: 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAG 347
P+ +IIDS+QT+ + + G + Q++E T+ L++ AK NI + + GHVTK G IAG
Sbjct: 166 HPQYVIIDSVQTMQEPDIDSAVGSVSQIREITAELMQIAKTNNITIFIVGHVTKGGAIAG 225
Query: 348 PRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLS 407
P++LEH+VD VLY EG+ +YR+LR+VKNRFGST+ELG+FEM + GL+ V+NPS+IFL
Sbjct: 226 PKILEHMVDTVLYFEGDLHHTYRILRAVKNRFGSTNELGIFEMREEGLREVANPSEIFLE 285
Query: 408 EQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLM 465
E+ D+ G A+ V M+G+R L+EIQAL R +G+ +R +I++VL
Sbjct: 286 ERLQDAN---GSAIVVSMEGTRPILVEIQALITPTIFGNAQRTASGLDRNRVSLIMAVLE 342
Query: 466 KQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGEL 525
K+A L LQ +L GV L E A DLA+A +I SSF +F+GEIGL GE+
Sbjct: 343 KRANLTLQNQDAYLKAAGGVKLDEPAIDLAIAMSIVSSFKNQGTRPTDSFVGEIGLTGEI 402
Query: 526 RMVSRMEKRVSTVAKLGYRKCIVPKS 551
R V+R+E+RV+ KLG+++ ++PK+
Sbjct: 403 RRVNRIEQRVAEAQKLGFQRILIPKN 428
>gi|325854304|ref|ZP_08171503.1| DNA repair protein RadA [Prevotella denticola CRIS 18C-A]
gi|325484098|gb|EGC87032.1| DNA repair protein RadA [Prevotella denticola CRIS 18C-A]
Length = 466
Score = 347 bits (889), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 200/481 (41%), Positives = 286/481 (59%), Gaps = 31/481 (6%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMK--RYSAGESDEGPVVQRTWLPQKP--EEV 167
++ +VCS+CG +W G C C T K R +A + T L E V
Sbjct: 4 DKIAYVCSNCGQESAKWIGKCPNCGQWNTFKEIRIAADTGSQAARHAATTLRNAASGEAV 63
Query: 168 -----QPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKST 222
+P RL +V+ + P + E+ RVLGGGLVPGS+VL+GG+PG+GKST
Sbjct: 64 SALANKPQRLRDVSSHDE------PRIDMHDGELNRVLGGGLVPGSIVLLGGEPGIGKST 117
Query: 223 LLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMI-ATEELFLYSSTDIEDIV 281
L LQ L V+YVSGEES QI RA R+ TE + + S T +E I
Sbjct: 118 LTLQTI--------LHMTQHVLYVSGEESPHQIKMRAVRITKDITENVIILSETSLERIF 169
Query: 282 EKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTK 341
E ++ + P ++IDSIQT+ V S G + QV+EC SALLRFAK + +PV+L GH+ K
Sbjct: 170 EHIRDVQPELVVIDSIQTISTEDVDSSPGSITQVRECASALLRFAKTSGVPVILIGHINK 229
Query: 342 SGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNP 401
G IAGP++LEHIVD V+ EG++ YR+LRS+KNRFGST ELG++EM Q GL+ VSNP
Sbjct: 230 EGSIAGPKILEHIVDTVIQFEGDQHYMYRILRSIKNRFGSTSELGIYEMEQQGLRQVSNP 289
Query: 402 SKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADM 459
S++ L+E H + L+G+A++ ++G R FL+E QAL S + T R G R +M
Sbjct: 290 SELLLTEDH---DGLSGVAISSTIEGVRPFLVETQALVSSAAYGTPQRSATGFDQRRLNM 346
Query: 460 IISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEI 519
+++VL K+ G KL + +FLN+ G+ +T+ A DL+V AA+ SS ++ PI G GE+
Sbjct: 347 LLAVLEKRVGFKLMQKDVFLNIAGGLRVTDMAMDLSVIAAVLSSNVDTPIEQGWCMCGEV 406
Query: 520 GLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVV 579
GL GE+R VSR+E+R++ KLG+ I+PK LA G ++ + ++E + +
Sbjct: 407 GLSGEVRPVSRIEQRIAEAEKLGFSHIILPKYNLSGLA--GKYSIQLHPVRKVEEALRNL 464
Query: 580 F 580
F
Sbjct: 465 F 465
>gi|239630187|ref|ZP_04673218.1| DNA repair protein RadA [Lactobacillus paracasei subsp. paracasei
8700:2]
gi|301067334|ref|YP_003789357.1| ATP-dependent serine protease [Lactobacillus casei str. Zhang]
gi|417981543|ref|ZP_12622208.1| DNA repair protein [Lactobacillus casei 12A]
gi|417984362|ref|ZP_12624985.1| DNA repair protein [Lactobacillus casei 21/1]
gi|417987625|ref|ZP_12628180.1| DNA repair protein [Lactobacillus casei 32G]
gi|417997121|ref|ZP_12637387.1| DNA repair protein [Lactobacillus casei M36]
gi|417999959|ref|ZP_12640162.1| DNA repair protein [Lactobacillus casei T71499]
gi|418003116|ref|ZP_12643217.1| DNA repair protein [Lactobacillus casei UCD174]
gi|418010701|ref|ZP_12650472.1| DNA repair protein [Lactobacillus casei Lc-10]
gi|418012380|ref|ZP_12652097.1| DNA repair protein [Lactobacillus casei Lpc-37]
gi|239527799|gb|EEQ66800.1| DNA repair protein RadA [Lactobacillus paracasei subsp. paracasei
8700:2]
gi|300439741|gb|ADK19507.1| Predicted ATP-dependent serine protease [Lactobacillus casei str.
Zhang]
gi|410521682|gb|EKP96640.1| DNA repair protein [Lactobacillus casei 12A]
gi|410522945|gb|EKP97883.1| DNA repair protein [Lactobacillus casei 32G]
gi|410525728|gb|EKQ00626.1| DNA repair protein [Lactobacillus casei 21/1]
gi|410533583|gb|EKQ08252.1| DNA repair protein [Lactobacillus casei M36]
gi|410537975|gb|EKQ12535.1| DNA repair protein [Lactobacillus casei T71499]
gi|410542946|gb|EKQ17347.1| DNA repair protein [Lactobacillus casei UCD174]
gi|410553280|gb|EKQ27283.1| DNA repair protein [Lactobacillus casei Lc-10]
gi|410556893|gb|EKQ30751.1| DNA repair protein [Lactobacillus casei Lpc-37]
Length = 454
Score = 347 bits (889), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 193/470 (41%), Positives = 280/470 (59%), Gaps = 23/470 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T +VC +CGY + G C C T+ + S P KP + V +
Sbjct: 5 KTQYVCQNCGYISATYLGRCPNCGGWNTLVEETVSSSKSVPRQTAAGSKVKPTRMNDVTI 64
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
+ + LD E+ RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ +A
Sbjct: 65 TKETRVKTGLD-----------ELNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSGQLA 113
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+ V+YVSGEES QI RA R+ +A ++LY TD+ I + + + P +
Sbjct: 114 NTG-----GTVLYVSGEESASQIKMRAGRLGVANSGMYLYPETDMPSIEDVINQMQPDYV 168
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
+IDS+QT+ + + + G + Q++E T+ L+R AK + + + GHVTK G IAGP++LE
Sbjct: 169 VIDSVQTMNVPEMNSAVGSVAQIREVTAELMRIAKSKGVTIFIVGHVTKEGAIAGPKILE 228
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EG+ +YR+LRSVKNRFGST+E+G+FEM Q GLQ V+NPS+IFL E+ +
Sbjct: 229 HMVDTVLYFEGDMHHTYRILRSVKNRFGSTNEIGIFEMHQDGLQEVANPSEIFLEERLAG 288
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVLMKQAGL 470
+ G AV V M+G+R L+EIQAL R +G+ +R +I++VL K+A L
Sbjct: 289 A---TGSAVVVSMEGTRPILVEIQALISPTMYGNAKRTSSGLDHNRVSLIMAVLEKRANL 345
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ +L GV L E A DLA+A AI SS+ + I F+GEIGL GE+R V+R
Sbjct: 346 MLQNQDAYLKATGGVKLDEPAIDLAMAVAIASSYRDKEISPTDCFVGEIGLTGEVRRVNR 405
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+E+RV AKLG+++ VP++ + + ++ IG ++ E ++ VF
Sbjct: 406 IEERVKEAAKLGFKRIFVPRNNLQGWHAP--KDIQVIGVTSIAEALHKVF 453
>gi|184154733|ref|YP_001843073.1| DNA repair protein RadA [Lactobacillus fermentum IFO 3956]
gi|227514000|ref|ZP_03944049.1| DNA repair protein RadA [Lactobacillus fermentum ATCC 14931]
gi|260663238|ref|ZP_05864130.1| DNA repair protein RadA [Lactobacillus fermentum 28-3-CHN]
gi|385811945|ref|YP_005848336.1| DNA repair protein radA [Lactobacillus fermentum CECT 5716]
gi|183226077|dbj|BAG26593.1| DNA repair protein [Lactobacillus fermentum IFO 3956]
gi|227087644|gb|EEI22956.1| DNA repair protein RadA [Lactobacillus fermentum ATCC 14931]
gi|260552430|gb|EEX25481.1| DNA repair protein RadA [Lactobacillus fermentum 28-3-CHN]
gi|299782844|gb|ADJ40842.1| DNA repair protein radA [Lactobacillus fermentum CECT 5716]
Length = 457
Score = 347 bits (889), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 197/472 (41%), Positives = 285/472 (60%), Gaps = 24/472 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T++VC +CGY ++ G C C T+ E P + +P R+
Sbjct: 5 KTHFVCQNCGYNSPRYLGRCPNCGQWSTL--VEEVEQASTPAAKNATATLTGIVARPQRI 62
Query: 173 LEVN-KGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAII 231
E++ K ++ R+ NE+ RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ +
Sbjct: 63 QEIDTKKTPRVKTRL-------NELNRVLGGGIVPGSLVLIGGDPGIGKSTLLLQVSGQL 115
Query: 232 ADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRA 291
+ H V+YVSGEES QI RA R+ ++ E+ ++Y T++E I + + P
Sbjct: 116 SVEHH-----KVLYVSGEESASQIKLRAQRLDVSGEDFYIYPETNMEAIRATIDSIQPEF 170
Query: 292 LIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVL 351
+IIDS+QT+ V + G + Q++ T+ L++ AK NI V + GHVTK G +AGP++L
Sbjct: 171 VIIDSVQTMQAADVTSAIGSVSQIRAVTAQLMQIAKGQNITVFVVGHVTKGGVLAGPKIL 230
Query: 352 EHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHS 411
EH+VD VLY EG+ +YR+LRSVKNRFGST+ELG+FEM+ GL V+NPS+IFL E+
Sbjct: 231 EHMVDTVLYFEGDLHHTYRILRSVKNRFGSTNELGIFEMNTRGLTEVANPSEIFLEERLK 290
Query: 412 DSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAG 469
D+ G AV V ++G+R L+EIQAL R G+ +R +I++VL K+A
Sbjct: 291 DA---TGSAVVVSLEGTRPILVEIQALITPTVFGNAQRTATGLNRNRVSLIMAVLEKRAN 347
Query: 470 LKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVS 529
L LQ +L GV L E A DLA+A AI SS+ + AF+GE+GL GE+R VS
Sbjct: 348 LLLQNQDAYLKAAGGVKLDEPAIDLAIAVAIASSYRDKGTRPTDAFVGEVGLTGEIRRVS 407
Query: 530 RMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQ-MEFIGCKNLKEVINVVF 580
R+E+RV+ AKLG+++ +VPK+ +LA Q +E +G L E + +
Sbjct: 408 RIEQRVAEAAKLGFKRILVPKN---NLAGWNPPQDIEVVGVTTLGEALKIAL 456
>gi|407475966|ref|YP_006789843.1| DNA repair protein RadA [Exiguobacterium antarcticum B7]
gi|407060045|gb|AFS69235.1| DNA repair protein RadA [Exiguobacterium antarcticum B7]
Length = 461
Score = 347 bits (889), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 194/443 (43%), Positives = 283/443 (63%), Gaps = 22/443 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQR--TWLPQKPEEVQPV 170
+T +VC CG +W G C C TM E E +R ++ ++++P
Sbjct: 8 KTKFVCQSCGTESPKWMGRCSGCGEWNTM----VEEVIEEKKARRGSAFVHTTTKQLKPE 63
Query: 171 RLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAI 230
RL ++ + Q + R+ +G +E RVLGGG+VPGS+VL+GGDPG+GKST+LLQ +A
Sbjct: 64 RLSDI---VSQEESRV-FTG--SSEFDRVLGGGIVPGSMVLVGGDPGIGKSTILLQTSAR 117
Query: 231 IADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPR 290
+A GE V+Y+SGEES++Q RA+R+ + T++LF+ S TD+ I V +P
Sbjct: 118 LAQ---RGEK--VLYISGEESLKQTKLRAERLGLPTQDLFVLSETDMNMIERVVDEENPA 172
Query: 291 ALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRV 350
LIIDSIQTVY+ + + G + QV+ECT+ L++ AK I + + GHVTK G IAGPR+
Sbjct: 173 FLIIDSIQTVYIDEIQSAPGSVTQVRECTAMLMKIAKSRGIAIFIVGHVTKQGSIAGPRL 232
Query: 351 LEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQH 410
LEH+VDAVLY EGE+ ++R+LR+VKNRFGST+E+G+FEM + GL+ V NPS+IFL E+
Sbjct: 233 LEHMVDAVLYFEGERHHTFRILRAVKNRFGSTNEIGIFEMRESGLEEVLNPSEIFLEERT 292
Query: 411 SDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVLMKQA 468
S ++G + M+G+R+ L+E+QAL S R GI ++ ++++VL K++
Sbjct: 293 SG---VSGSTIVASMEGTRTVLVELQALISPTSFGNPRRMATGIDQNKVALLMAVLEKRS 349
Query: 469 GLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMV 528
GL LQ +L GV L E A DLA+ A+ SSF + P IGE+GL GE+R V
Sbjct: 350 GLLLQTQDAYLKAAGGVKLDEPAIDLAICVAVASSFRDKPTRPTDVVIGEVGLTGEVRRV 409
Query: 529 SRMEKRVSTVAKLGYRKCIVPKS 551
SR+E+RV+ AKLG+ + I+PK+
Sbjct: 410 SRIEQRVAEAAKLGFTRAIIPKN 432
>gi|408674951|ref|YP_006874699.1| DNA repair protein RadA [Emticicia oligotrophica DSM 17448]
gi|387856575|gb|AFK04672.1| DNA repair protein RadA [Emticicia oligotrophica DSM 17448]
Length = 459
Score = 347 bits (889), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 187/478 (39%), Positives = 289/478 (60%), Gaps = 34/478 (7%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESD--------EGPVVQRTWLPQKP 164
+T + C CG++ ++ G C +C TM +S+ G QRT
Sbjct: 5 KTAYFCQSCGFSSPKYLGRCTSCGEWNTMIEEVLAKSEPEKGNWKFTGSNAQRTV----- 59
Query: 165 EEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLL 224
+P L E+ Q +RI +E+ RVLGGG+VPGSLVLIGG+PG+GKSTL+
Sbjct: 60 --NKPKTLTEITT---QERYRIITED---DELNRVLGGGIVPGSLVLIGGEPGIGKSTLM 111
Query: 225 LQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKV 284
LQ+A + D ++YVSGEES +QI RA+RM E ++ + T ++I ++
Sbjct: 112 LQIALSLKDY-------TILYVSGEESEQQIKMRAERMQYVNERCYILNETSTDNIFRQI 164
Query: 285 QPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGD 344
+ P ++IDSIQT+ + AG + QVKECT+ L++F+K+++ PV++ GH+TK G
Sbjct: 165 ELTEPDIVVIDSIQTLASPLIESGAGSVSQVKECTAELMKFSKESDTPVIMIGHITKDGS 224
Query: 345 IAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKI 404
+AGP+VLEH+VD VL EG++ +YR+LR+ KNRFGST ELG++EM GL+ VSNPS+I
Sbjct: 225 LAGPKVLEHMVDTVLQFEGDRHMTYRILRTTKNRFGSTSELGIYEMQGTGLRQVSNPSEI 284
Query: 405 FLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQAL--CVSGSTVSRHVNGIQASRADMIIS 462
+S++ D L+G+ +A +++G+R LIEIQ+L + T R NG + R M+++
Sbjct: 285 LISQREED---LSGITIAAMLEGNRPLLIEIQSLVSVATYGTPQRTSNGFDSRRTQMLLA 341
Query: 463 VLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLG 522
VL K+ G +L +FLN+ G+ + + A DLA+ +I SS+ + +P+ F E+GLG
Sbjct: 342 VLEKRGGFRLGTQDVFLNIAGGLKVEDPAIDLAICVSIVSSYEDISVPSSCCFAAEVGLG 401
Query: 523 GELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
GE+R V+R+E R+S KLG++K V K K + L +++ L+EV + +F
Sbjct: 402 GEIRAVNRIENRISEAEKLGFKKIFVSKYNLKGI-DLNQYKIQIFAATKLEEVFSELF 458
>gi|319952712|ref|YP_004163979.1| DNA repair protein rada [Cellulophaga algicola DSM 14237]
gi|319421372|gb|ADV48481.1| DNA repair protein RadA [Cellulophaga algicola DSM 14237]
Length = 453
Score = 347 bits (889), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 191/470 (40%), Positives = 286/470 (60%), Gaps = 24/470 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T + C +CG +W G C AC+ T+ + + +W + R
Sbjct: 5 KTAFFCQNCGTQYAKWVGQCTACKEWNTVVEEVVQKE-----EKSSWKTPTNTAKKVSRP 59
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
L VN+ + + R+ F E RVLGGGLVPGSL L+GG+PG+GKSTLLLQ+A
Sbjct: 60 LRVNEISTEKELRL---NTFDLEFNRVLGGGLVPGSLTLLGGEPGIGKSTLLLQIA---- 112
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
L P +YVSGEES +QI RADR+ ++ F+ + T ++I ++++ P +
Sbjct: 113 ----LKLPYKTLYVSGEESQKQIKMRADRIHPNSDTCFILTETKTQNIFKQIEDTEPDIV 168
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
+IDSIQT++ + +AG + Q++ECT+ L++FAK+TN PV+L GH+TK G IAGP++LE
Sbjct: 169 VIDSIQTLHTDYIESAAGSISQIRECTAELIKFAKETNTPVILIGHITKDGSIAGPKILE 228
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD+VL EG++ YR+LRS+KNRFGST ELG++EM GL+ V+NPS+I +S+ +
Sbjct: 229 HMVDSVLQFEGDRNYVYRILRSLKNRFGSTSELGIYEMQGSGLREVNNPSEILISK---N 285
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
E L+G A+A ++G R +IEIQAL + T R G A R +M+++VL K+AG
Sbjct: 286 DEGLSGTAIASTVEGMRPLMIEIQALVSTAVYGTPQRSTTGYNAKRLNMLLAVLEKRAGF 345
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
KL +FLN+ G+++ + A DLAV AAI SS + I G+ F E+GL GE+R V R
Sbjct: 346 KLAAKDVFLNITGGISVDDPAIDLAVIAAILSSNEDIAIEKGVCFAAEVGLAGEIRPVQR 405
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+E+R+ KLG+ V K+ + SL Q++ +++V N +F
Sbjct: 406 VEQRILEAEKLGFDTIFVSKNNKISLKD---TQIKIQLVAKIEDVANYLF 452
>gi|443243142|ref|YP_007376367.1| DNA repair protein [Nonlabens dokdonensis DSW-6]
gi|442800541|gb|AGC76346.1| DNA repair protein [Nonlabens dokdonensis DSW-6]
Length = 456
Score = 347 bits (889), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 192/467 (41%), Positives = 278/467 (59%), Gaps = 28/467 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T W C +CG +W G C +C+ T+ + V+++W V V L
Sbjct: 5 KTTWFCQNCGAQHSKWQGQCSSCKEWNTLVEEVVQKE-----VKKSW----ESAVSDVPL 55
Query: 173 LEVNKGMKQLDWRI-----PLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQM 227
QL +I P E RVLGGGLVPGS+ L+GG+PG+GKSTLLLQ+
Sbjct: 56 SRKRAPQPQLISKINTTESPRLDTTNAEFNRVLGGGLVPGSISLLGGEPGIGKSTLLLQV 115
Query: 228 AAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPL 287
L P +YVSGEES +QI RADR+ ++ + T ++I ++ +
Sbjct: 116 C--------LNLPYKTLYVSGEESAQQIKMRADRIKKDAVNCYILTETKTQNIFRQITEV 167
Query: 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAG 347
P LIIDSIQT+ + S G + Q++ECTS L++FAK+ N PVLL GH+TK G+IAG
Sbjct: 168 EPDVLIIDSIQTLQTDHIESSPGSVSQIRECTSELIKFAKEANTPVLLIGHITKDGNIAG 227
Query: 348 PRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLS 407
P++LEH+VD VL EG++ +YR+LR++KNRFGST E+G++EM GL+ V NPS+I +S
Sbjct: 228 PKILEHMVDTVLQFEGDRNHTYRILRALKNRFGSTHEIGIYEMLGHGLREVMNPSEILIS 287
Query: 408 EQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLM 465
++ ++ L+G A+A M+G R +IE+QAL + T R G R +MI++VL
Sbjct: 288 QRGAN---LSGTAIAATMEGMRPLMIEVQALVSTAVYGTPQRSATGYNLKRLNMILAVLE 344
Query: 466 KQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGEL 525
K+AG KL + +FLN+ G+ + + A DLAV AAI SS + + + F E+GLGGE+
Sbjct: 345 KRAGFKLGQKDVFLNITGGITVDDPAIDLAVVAAILSSNFDIELSSQHCFSAEVGLGGEI 404
Query: 526 RMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNL 572
R VSRME+RV+ VAKLG+ K + +++ LG E F ++L
Sbjct: 405 RPVSRMEQRVNEVAKLGFDKVFIA-PGKQNFKNLGTEVQAFSKIEDL 450
>gi|302390638|ref|YP_003826459.1| DNA repair protein RadA [Thermosediminibacter oceani DSM 16646]
gi|302201266|gb|ADL08836.1| DNA repair protein RadA [Thermosediminibacter oceani DSM 16646]
Length = 449
Score = 347 bits (889), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 204/473 (43%), Positives = 294/473 (62%), Gaps = 31/473 (6%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVR 171
++ +VC CG+ +W G C C S + E V + + E +P+
Sbjct: 3 SKRRFVCQQCGFESVKWMGRCPDCGSWNSFA--------EEQVTRSAGVSFLSEHQKPLL 54
Query: 172 LLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAII 231
L E++ ++ RI +GL E+ RVLGGG+VPGSLVL+GGDPG+GKSTL+LQ AA +
Sbjct: 55 LSEIDYSEEE---RIK-TGLL--ELDRVLGGGIVPGSLVLVGGDPGIGKSTLMLQAAAKL 108
Query: 232 ADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEK-VQPLSPR 290
+ V+YV+GEES +Q+ RA+R+ I+ L++ + ++ D+VEK V+ LSP+
Sbjct: 109 GATGKI-----VLYVTGEESAKQVKLRAERLGISGGHLYIVAENNL-DVVEKHVRELSPQ 162
Query: 291 ALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRV 350
+IIDSIQT YL + + G + QV+E T LL+ +K+T V + GHVTK G +AGPR
Sbjct: 163 VVIIDSIQTAYLPELESAPGSISQVREATLRLLKLSKETGTAVFIVGHVTKEGSLAGPRT 222
Query: 351 LEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQH 410
LEH+VD VLY EGE++ SYR+LR+VKNRFGST+E+G+FEM GL V +PSK LS +
Sbjct: 223 LEHMVDCVLYFEGERYQSYRVLRAVKNRFGSTNEIGIFEMQTSGLAEVDSPSKFLLSGRL 282
Query: 411 SDSEFLAGLAVAVIMDGSRSFLIEIQAL-CVSGSTV-SRHVNGIQASRADMIISVLMKQA 468
+S G AV M+G+R L+E+QAL C +G + R +GI +RA ++I+VL K+
Sbjct: 283 GNS---PGSAVVCTMEGTRPLLVEVQALTCPTGFNLPRRQTSGIDYNRAALLIAVLEKKL 339
Query: 469 GLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMV 528
GL L +++N G+ LTE A DLAV AI SSF P+ + + IGE+GL GE+R V
Sbjct: 340 GLNLAHEDVYINAAGGIKLTEPAVDLAVITAIVSSFKNKPVRD-VVIIGEVGLAGEVRSV 398
Query: 529 SRMEKRVSTVAKLGYRKCIVPKSAEKSLA-TLGFEQMEFIGCKNLKEVINVVF 580
+EKRV+ AKLG+++ I+P + L T+G ++ G K LK+ I F
Sbjct: 399 GYIEKRVNEAAKLGFKEAIIPYDNMRDLKNTVG---IDISGVKELKDAIEAAF 448
>gi|343084770|ref|YP_004774065.1| DNA repair protein RadA [Cyclobacterium marinum DSM 745]
gi|342353304|gb|AEL25834.1| DNA repair protein RadA [Cyclobacterium marinum DSM 745]
Length = 458
Score = 347 bits (889), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 195/480 (40%), Positives = 296/480 (61%), Gaps = 39/480 (8%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T++ C +CG +W G C +C T VVQ+ EE Q
Sbjct: 5 KTSFFCQNCGVESPKWTGKCPSCGEWNTFVE---------EVVQK-------EEAQRGSW 48
Query: 173 LEVNKGMKQLDWRIPLSGLF---------GN-EVARVLGGGLVPGSLVLIGGDPGVGKST 222
NK K+ + L + G+ E+ RVLGGG+VPGSLVLIGG+PG+GKST
Sbjct: 49 KANNKNTKKANQPKTLGEITFEEQSRLITGDIELDRVLGGGIVPGSLVLIGGEPGIGKST 108
Query: 223 LLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVE 282
L+LQ+A +++ + V+YVSGEES QI R++RM +E ++ S T + I +
Sbjct: 109 LMLQIALMLSK-------TKVLYVSGEESETQIKMRSERMQHHSESCYVLSETKTQQIFQ 161
Query: 283 KVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKS 342
+++ L P L+IDSIQT++ + V +AG + QV+ECT+ L++FAK+T PV L GH+TK
Sbjct: 162 QIELLKPELLVIDSIQTLHSQYVESAAGSVSQVRECTAELMKFAKETGTPVFLIGHITKD 221
Query: 343 GDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPS 402
G IAGP++LEH+VD VL EG++ SYR+LR+ KNRFGST+ELG++EM GL+ V+NPS
Sbjct: 222 GTIAGPKILEHMVDTVLQFEGDRHLSYRILRTSKNRFGSTNELGIYEMHANGLRPVTNPS 281
Query: 403 KIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMI 460
+I ++++ E L G+A+ +++G+R LIEIQ+L + T R G A R +M+
Sbjct: 282 EILMTQRE---EQLNGVAIGAMLEGNRPLLIEIQSLVSPATYGTPQRSSTGHDAKRLNML 338
Query: 461 ISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIG 520
++VL K+ G++L + +FLN+ G+ + + DLAV A+I SS+ + I GI F GEIG
Sbjct: 339 LAVLEKRGGMRLGQQDVFLNIAGGLRVDDPGLDLAVVASIISSYEDKSIDPGICFAGEIG 398
Query: 521 LGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
LGGE+R V+R+E R++ AK+G++K ++ + A K L L +E + L+E+ +F
Sbjct: 399 LGGEVRAVNRIENRIAEAAKMGFKKIMLSRYAIKGLE-LNKYPIEVLAVSKLEEMYRHIF 457
>gi|251799674|ref|YP_003014405.1| DNA repair protein RadA [Paenibacillus sp. JDR-2]
gi|247547300|gb|ACT04319.1| DNA repair protein RadA [Paenibacillus sp. JDR-2]
Length = 455
Score = 347 bits (889), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 203/474 (42%), Positives = 287/474 (60%), Gaps = 30/474 (6%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+ +VC++CG +W G C C+S TM E + Q L + +P +
Sbjct: 5 KLKFVCTECGTESPKWLGKCPGCQSWNTM----VEEKETVVKTQGVGLRVAQTKEKPQSI 60
Query: 173 LEVNKGMK-QLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAII 231
+ + G + +++ R+ E+ RVLGGG+VPGSL+L+GGDPG+GKSTLLLQ + +
Sbjct: 61 IHIESGQEPRIETRL-------QELNRVLGGGVVPGSLILVGGDPGIGKSTLLLQTSHAL 113
Query: 232 ADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRA 291
A + V+Y+SGEESV Q RADR+ TE LF+ T++E I + ++ + P
Sbjct: 114 AS-----KGLKVLYISGEESVRQTRLRADRLGALTESLFVLCETNMEQINDAIESVQPDF 168
Query: 292 LIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVL 351
L+IDSIQTVY V + G + QV+ECT+ +R AK I +L GHVTK G IAGPR+L
Sbjct: 169 LVIDSIQTVYDPNVQSAPGSVAQVRECTAHFMRVAKIKGIATVLVGHVTKEGAIAGPRLL 228
Query: 352 EHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHS 411
EH+VD VLY EGE+ +YRLLR+VKNRFGST+E+G+FEM + GL+ V+NPS++FLSE+
Sbjct: 229 EHMVDCVLYFEGERHHTYRLLRAVKNRFGSTNEIGIFEMGEEGLREVANPSELFLSERPL 288
Query: 412 DSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVS--RHVNGIQASRADMIISVLMKQAG 469
++G V M+G+R L+E+QAL + + S R GI R +II+VL K+ G
Sbjct: 289 G---VSGSTVVASMEGTRPVLVELQALVAATNFPSPRRMSTGIDHHRMALIIAVLEKRIG 345
Query: 470 LKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVS 529
+ LQ +LNV GV L E A DLA A ++ SSF + P GE+GL GE+R VS
Sbjct: 346 MFLQTQDAYLNVAGGVKLDEPAVDLAAAVSLASSFRDAPTRPYDVIFGEVGLTGEVRAVS 405
Query: 530 RMEKRVSTVAKLGYRKCIVPKSAEKSLATLGF---EQMEFIGCKNLKEVINVVF 580
R E+RV KLG+++ I+P EKSL G+ E +E IG + E ++
Sbjct: 406 RAEQRVKEAEKLGFKRVIMP---EKSLK--GWKPPEGIEIIGVSTVAEALSAAL 454
>gi|417990648|ref|ZP_12631117.1| DNA repair protein [Lactobacillus casei A2-362]
gi|417993969|ref|ZP_12634304.1| DNA repair protein [Lactobacillus casei CRF28]
gi|410530625|gb|EKQ05393.1| DNA repair protein [Lactobacillus casei CRF28]
gi|410534219|gb|EKQ08877.1| DNA repair protein [Lactobacillus casei A2-362]
Length = 454
Score = 347 bits (889), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 193/470 (41%), Positives = 280/470 (59%), Gaps = 23/470 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T +VC +CGY + G C C T+ + S P KP + V +
Sbjct: 5 KTQYVCQNCGYISATYLGRCPNCGGWNTLVEETVSSSKSVPRQTAAGSKIKPTRMNDVTI 64
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
+ + LD E+ RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ +A
Sbjct: 65 TKETRVKTGLD-----------ELNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSGQLA 113
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+ V+YVSGEES QI RA R+ +A ++LY TD+ I + + + P +
Sbjct: 114 NTG-----GTVLYVSGEESASQIKMRAGRLGVANSGMYLYPETDMPSIEDVINQMQPDYV 168
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
+IDS+QT+ + + + G + Q++E T+ L+R AK + + + GHVTK G IAGP++LE
Sbjct: 169 VIDSVQTMNVPEMNSAVGSVAQIREVTAELMRIAKSKGVTIFIVGHVTKEGAIAGPKILE 228
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EG+ +YR+LRSVKNRFGST+E+G+FEM Q GLQ V+NPS+IFL E+ +
Sbjct: 229 HMVDTVLYFEGDMHHTYRILRSVKNRFGSTNEIGIFEMHQDGLQEVANPSEIFLEERLAG 288
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVLMKQAGL 470
+ G AV V M+G+R L+EIQAL R +G+ +R +I++VL K+A L
Sbjct: 289 A---TGSAVVVSMEGTRPILVEIQALISPTMYGNAKRTSSGLDHNRVSLIMAVLEKRANL 345
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ +L GV L E A DLA+A AI SS+ + I F+GEIGL GE+R V+R
Sbjct: 346 MLQNQDAYLKATGGVKLDEPAIDLAMAVAIASSYRDKEISPTDCFVGEIGLTGEVRRVNR 405
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+E+RV AKLG+++ VP++ + + ++ IG ++ E ++ VF
Sbjct: 406 IEERVKEAAKLGFKRIFVPRNNLQGWHAP--KDIQVIGVTSIAEALHKVF 453
>gi|294496955|ref|YP_003560655.1| DNA repair protein RadA [Bacillus megaterium QM B1551]
gi|384049296|ref|YP_005497313.1| RadA-like DNA repair protein [Bacillus megaterium WSH-002]
gi|294346892|gb|ADE67221.1| DNA repair protein RadA [Bacillus megaterium QM B1551]
gi|345446987|gb|AEN92004.1| RadA-like DNA repair protein [Bacillus megaterium WSH-002]
Length = 458
Score = 346 bits (888), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 196/453 (43%), Positives = 274/453 (60%), Gaps = 35/453 (7%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLP-------QKPE 165
+T + C CGY +W G C C S +M E +E +R QKP+
Sbjct: 5 KTKFACQHCGYESAKWMGKCPGCGSWNSMVE----EMEETKSSRRGAFSGATASKVQKPQ 60
Query: 166 EVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLL 225
+ + + RI E+ RVLGGG+V GSLVLIGGDPG+GKSTLLL
Sbjct: 61 SITAIE--------STTEPRIFTPS---AELNRVLGGGIVRGSLVLIGGDPGIGKSTLLL 109
Query: 226 QMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQ 285
Q +A +A + V+Y+SGEES +Q RADR+ + EEL++++ T++E I+E +
Sbjct: 110 QTSAQLAMKQN-----KVLYISGEESTKQTKLRADRLGVKAEELYVHAETNLELILEAIS 164
Query: 286 PLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDI 345
+ P ++IDSIQT+Y V + G + QV+ECT+ L+R AK I + + GHVTK G I
Sbjct: 165 SMQPDFVVIDSIQTIYHADVTSAPGSVSQVRECTAELMRVAKTNGIAIFIVGHVTKEGAI 224
Query: 346 AGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIF 405
AGPR+LEH+VD VLY EGE+ +YR+LR+VKNRFGST+E+G+FEM + GL+ V NPS+IF
Sbjct: 225 AGPRLLEHMVDTVLYFEGERHHTYRILRAVKNRFGSTNEMGIFEMKESGLEEVLNPSEIF 284
Query: 406 LSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISV 463
L E+ S+ AG V M+G+R L+E+QAL S R G+ +R +I++V
Sbjct: 285 LEER---SQGAAGSVVVASMEGTRPVLVELQALISPTSFGNPRRMATGVDHNRVSLIMAV 341
Query: 464 LMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGG 523
L K+ G+ LQ +L V GV L E A DLAVA +I SSF + +GE+GL G
Sbjct: 342 LEKRVGMLLQNQDAYLKVAGGVKLDEPAIDLAVAVSIASSFRDAASSATDVIVGEVGLTG 401
Query: 524 ELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSL 556
E+R VSR+E+RV KLG+++ I+P EK+L
Sbjct: 402 EVRRVSRIEQRVQEAVKLGFQRIIIP---EKNL 431
>gi|295702322|ref|YP_003595397.1| DNA repair protein RadA [Bacillus megaterium DSM 319]
gi|294799981|gb|ADF37047.1| DNA repair protein RadA [Bacillus megaterium DSM 319]
Length = 458
Score = 346 bits (888), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 199/475 (41%), Positives = 282/475 (59%), Gaps = 36/475 (7%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLP-------QKPE 165
+T + C CGY +W G C C S +M E +E +R QKP+
Sbjct: 5 KTKFACQHCGYESAKWMGKCPGCGSWNSMVE----EMEETKSSRRGAFSGATASKVQKPQ 60
Query: 166 EVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLL 225
+ + + RI E+ RVLGGG+V GSLVLIGGDPG+GKSTLLL
Sbjct: 61 SITAIE--------STTEPRIFTPS---AELNRVLGGGIVRGSLVLIGGDPGIGKSTLLL 109
Query: 226 QMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQ 285
Q +A +A + V+Y+SGEES +Q RADR+ + EEL++++ T++E I+E +
Sbjct: 110 QTSAQLAMKQN-----KVLYISGEESTKQTKLRADRLGVKAEELYVHAETNLELILEAIS 164
Query: 286 PLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDI 345
+ P ++IDSIQT+Y V + G + QV+ECT+ L+R AK I + + GHVTK G I
Sbjct: 165 SMQPDFVVIDSIQTIYHADVTSAPGSVSQVRECTAELMRVAKTNGIAIFIVGHVTKEGAI 224
Query: 346 AGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIF 405
AGPR+LEH+VD VLY EGE+ +YR+LR+VKNRFGST+E+G+FEM + GL+ V NPS+IF
Sbjct: 225 AGPRLLEHMVDTVLYFEGERHHTYRILRAVKNRFGSTNEMGIFEMKESGLEEVLNPSEIF 284
Query: 406 LSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISV 463
L E+ S+ AG V M+G+R L+E+QAL S R G+ +R +I++V
Sbjct: 285 LEER---SQGAAGSVVVASMEGTRPVLVELQALISPTSFGNPRRMATGVDHNRVSLIMAV 341
Query: 464 LMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGG 523
L K+ G+ LQ +L V GV L E A DLAVA +I SSF + +GE+GL G
Sbjct: 342 LEKRVGMLLQNQDAYLKVAGGVKLDEPAIDLAVAVSIASSFRDAASSATDVIVGEVGLTG 401
Query: 524 ELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGF-EQMEFIGCKNLKEVIN 577
E+R VSR+E+RV KLG+++ I+P EK+L + ++ IG + E +
Sbjct: 402 EVRRVSRIEQRVQEAVKLGFQRIIIP---EKNLGGWKIPDGIDVIGVSTVAEALQ 453
>gi|386733949|ref|YP_006207130.1| DNA repair protein RadA [Bacillus anthracis str. H9401]
gi|384383801|gb|AFH81462.1| DNA repair protein RadA [Bacillus anthracis str. H9401]
Length = 438
Score = 346 bits (888), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 201/467 (43%), Positives = 283/467 (60%), Gaps = 38/467 (8%)
Query: 118 CSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRLLEV-N 176
C CG QW + E V + +R + + + E +P RL EV
Sbjct: 4 CPGCG----QWNTLVEEMEPVVSSRRLNYANAIQ------------TEVTKPRRLTEVET 47
Query: 177 KGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHD 236
K +++ + E RVLGGG+V GSLVLIGGDPG+GKSTLLLQ+++ +AD
Sbjct: 48 KSEARIETKF-------QEFNRVLGGGIVDGSLVLIGGDPGIGKSTLLLQISSQLAD--- 97
Query: 237 LGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIIDS 296
V+Y+SGEES +QI RADR+ + LF+ S TD++ I ++ ++P ++IDS
Sbjct: 98 --SSYDVLYISGEESAKQIKLRADRLHVNGSNLFVVSETDLQRIATHIEEMNPAFVVIDS 155
Query: 297 IQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVD 356
IQT++L V + G + QV+ECT+ L++ AK IP+ + GHVTK G IAGPR+LEH+VD
Sbjct: 156 IQTIHLPEVTSAPGSVAQVRECTAELMKLAKTKGIPIFIVGHVTKEGAIAGPRMLEHMVD 215
Query: 357 AVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFL 416
AVLY EG++ +YR+LR+VKNRFGST+E+G+FEM +LGL V NPS+IFL E+ +
Sbjct: 216 AVLYFEGDRHHTYRILRAVKNRFGSTNEMGIFEMKELGLAEVLNPSEIFLEERPVG---V 272
Query: 417 AGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVLMKQAGLKLQE 474
AG V M+G+R L+EIQAL S R GI +R +I++VL K+ GL LQ
Sbjct: 273 AGSTVVASMEGTRPVLVEIQALISPTSFGNPRRMATGIDHNRVSLIMAVLEKRTGLLLQN 332
Query: 475 NAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKR 534
+L V G+ L E A DLAVA +I SSF + A IGE+GL GE+R VSR+E+R
Sbjct: 333 QDAYLKVAGGLKLDEPAIDLAVALSIASSFRDKSTAPTDAVIGEVGLTGEIRRVSRIEQR 392
Query: 535 VSTVAKLGYRKCIVPKSAEKSLATLGF-EQMEFIGCKNLKEVINVVF 580
V AKLG+++ I+P+ K+L + +E +G NL E + +
Sbjct: 393 VQEAAKLGFQRAIIPR---KNLGGWTIPDGIEVVGVSNLGEALRLTL 436
>gi|336398717|ref|ZP_08579517.1| DNA replication and repair protein RadA [Prevotella
multisaccharivorax DSM 17128]
gi|336068453|gb|EGN57087.1| DNA replication and repair protein RadA [Prevotella
multisaccharivorax DSM 17128]
Length = 469
Score = 346 bits (888), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 192/455 (42%), Positives = 280/455 (61%), Gaps = 38/455 (8%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVV------------QRTW 159
++T +VCS+CGY +W G C +C + K +D G + ++
Sbjct: 4 DKTMFVCSNCGYESAKWLGRCPSCGEWDSFKEIKVA-ADYGSLNAKNTAASIRQGGEKVM 62
Query: 160 LPQKPEEVQPVRLLEVN-KGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGV 218
+P K + P+RL E+ + ++D R E RVLGGG+VPGS+VL+GG+PG+
Sbjct: 63 MPHK--DNSPLRLKEIPLQDAPRIDTR-------DEEFNRVLGGGIVPGSIVLLGGEPGI 113
Query: 219 GKSTLLLQMAAIIADVHDLG-EPSPVVYVSGEESVEQIGNRADRMMIATEE-LFLYSSTD 276
GKSTL LQ LG E ++YVSGEES QI RA+R+ + +F+ T
Sbjct: 114 GKSTLTLQTI--------LGMENMSILYVSGEESAHQIKMRAERIQKEVRDNVFILCETS 165
Query: 277 IEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLA 336
+E I +Q L P L+IDSIQT+ V S G + QV+EC ++LLRFAK + +PVLL
Sbjct: 166 LERIYAGIQQLHPNLLVIDSIQTISTEQVDSSPGSISQVRECAASLLRFAKSSGVPVLLI 225
Query: 337 GHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQ 396
GH+ K G +AGP++LEHIVD V+ EG++ YR+LRS+KNRFGST ELG++EM GL+
Sbjct: 226 GHINKEGTLAGPKILEHIVDTVIQFEGDQHYVYRILRSIKNRFGSTSELGIYEMRHNGLR 285
Query: 397 AVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQA 454
AVSNPS++ L+E H E L+G+A++ ++G R FL+E QAL + + T R G
Sbjct: 286 AVSNPSELLLTEDH---EGLSGVAISSTIEGMRPFLVETQALVSTAAYGTPQRSATGFDQ 342
Query: 455 SRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIA 514
R +M+++VL K+ G KL + +FLN+ G+ +T+ A DL+V AA+ SS ++ PI +G
Sbjct: 343 RRLNMLLAVLEKRVGFKLIQKDVFLNIAGGMRVTDMAMDLSVIAAVLSSNVDTPIESGWC 402
Query: 515 FIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVP 549
GE+GL GE+R VSR+E+R++ KLG+ I+P
Sbjct: 403 MCGEVGLSGEVRPVSRVEQRIAEAEKLGFNHIILP 437
>gi|329117356|ref|ZP_08246073.1| DNA repair protein RadA [Streptococcus parauberis NCFD 2020]
gi|333905951|ref|YP_004479822.1| DNA repair protein [Streptococcus parauberis KCTC 11537]
gi|326907761|gb|EGE54675.1| DNA repair protein RadA [Streptococcus parauberis NCFD 2020]
gi|333121216|gb|AEF26150.1| DNA repair protein [Streptococcus parauberis KCTC 11537]
gi|456369728|gb|EMF48628.1| DNA repair protein [Streptococcus parauberis KRS-02109]
gi|457094513|gb|EMG25032.1| DNA repair protein [Streptococcus parauberis KRS-02083]
Length = 454
Score = 346 bits (888), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 192/471 (40%), Positives = 282/471 (59%), Gaps = 24/471 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+ +VC +CGY ++ G C C S + + + V + KP +++ V
Sbjct: 5 KATFVCQECGYQSPKYLGRCPNCSSWSSFVEEVEVKEVKNARVSMSGEKSKPIKLKDVDN 64
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
+ + +D E RVLGGG+VPGS++LIGGDPG+GKSTLLLQ++ +A
Sbjct: 65 IHYARTQTDMD-----------EFNRVLGGGVVPGSMILIGGDPGIGKSTLLLQVSTQLA 113
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+ V+YVSGEES EQI R++R+ E +LY+ T++E++ +V+ + P L
Sbjct: 114 N------KGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMENVRVEVERIQPDFL 167
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQT+ ++G G + QV+E T+ L++ AK NI + GHVTK G +AGPR+LE
Sbjct: 168 IIDSIQTMMSPEISGIQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTLAGPRMLE 227
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS++FL E+
Sbjct: 228 HMVDTVLYFEGERHHTFRILRAVKNRFGSTNEIGIFEMQSAGLVEVLNPSQVFLEERLDG 287
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
+ G A+ V M+GSR L E+Q+L R G+ +R +I++VL K+ GL
Sbjct: 288 A---TGSAIVVTMEGSRPILAEVQSLVTPTVFGNARRTTTGLDFNRVSLIMAVLEKRCGL 344
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ +L GV L E A DL+VA AI SS+ E P AF+GEIGL GE+R V+R
Sbjct: 345 LLQNQDAYLKSAGGVKLDEPAIDLSVAVAIASSYKEKPTNPQEAFLGEIGLTGEIRRVTR 404
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVFT 581
+E+R++ AKLG+ K PK++ + + +E IG + +V+N VF+
Sbjct: 405 IEQRINEAAKLGFTKVYAPKNSLQGIKIPS--GIEVIGVATVGQVLNAVFS 453
>gi|298206883|ref|YP_003715062.1| DNA repair protein [Croceibacter atlanticus HTCC2559]
gi|83849517|gb|EAP87385.1| putative DNA repair protein [Croceibacter atlanticus HTCC2559]
Length = 453
Score = 346 bits (888), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 185/446 (41%), Positives = 275/446 (61%), Gaps = 27/446 (6%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T + C +CG +W G C AC+ T+ ++++ +T K +P ++
Sbjct: 5 KTTFFCQNCGTQYSKWQGQCSACKEWNTIAEEVIQKAEKSD--WKTATAPKKRVAKPQKV 62
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
+++ +Q NE+ RVLGGGLVPGSL L+GG+PG+GKSTL+LQ+A
Sbjct: 63 ADISYTQEQR------YNTKNNELNRVLGGGLVPGSLTLLGGEPGIGKSTLMLQIA---- 112
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
L P +YVSGEES +QI RA+R+ + F+ + T ++I ++V+ + P +
Sbjct: 113 ----LQLPFKTLYVSGEESAQQIKMRAERIDNSESNCFILTETKTQNIFKQVEAIEPDIV 168
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
+IDSIQT++ + SAG + Q++ECT+ L++FAK+T PV+L GH+TK G+IAGP+VLE
Sbjct: 169 VIDSIQTLHSDYIESSAGSISQIRECTTELIKFAKETATPVILIGHITKDGNIAGPKVLE 228
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VL EG++ YR+LR+ KNRFGST ELG++EM GL+ V+NPS+I LS+ D
Sbjct: 229 HMVDTVLQFEGDRNHIYRILRAQKNRFGSTHELGIYEMQGSGLREVANPSEILLSKNEDD 288
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
L+G A+A ++G R +IEIQAL S T R G A R +M+++VL K+AG
Sbjct: 289 ---LSGTAIAATLEGMRPLMIEIQALVSSAVYGTPQRSATGYNAKRLNMLLAVLEKRAGF 345
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
KL +FLNV G+++ + A DLAV AA+ SS + +P I F E+GL GE+R V +
Sbjct: 346 KLGAKDVFLNVTGGISVDDPAIDLAVVAAVLSSNEDIHVPKDICFAAEVGLAGEIRPVPK 405
Query: 531 MEKRVSTVAKLGY------RKCIVPK 550
+E+R+ KLG+ R C +PK
Sbjct: 406 IEQRILEAEKLGFASIMISRYCKLPK 431
>gi|357012844|ref|ZP_09077843.1| DNA repair protein RadA [Paenibacillus elgii B69]
Length = 455
Score = 346 bits (888), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 200/447 (44%), Positives = 275/447 (61%), Gaps = 24/447 (5%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGT-MKRYSAGESDEGPVVQRTWLPQKPEEVQPV 170
+T + C CGY +W G C CE+ T ++ +G + +L +K + V +
Sbjct: 4 TKTKFFCQSCGYESPKWLGKCPGCEAWNTFVEEVETVVKSKG--LHTNFLNKKEKAVSII 61
Query: 171 RLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAI 230
+ + D R E+ RVLGGG+VPGSL+L+GGDPG+GKSTLLLQ + +
Sbjct: 62 NIESSQEERIVTDNR---------ELNRVLGGGIVPGSLILVGGDPGIGKSTLLLQTSHL 112
Query: 231 IADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPR 290
+ + DL V+Y+SGEESV Q RADR+ + LF+ T++E I + + P
Sbjct: 113 LTQL-DL----KVLYISGEESVRQTKLRADRLQAVSPLLFVLCETNVEHIEAAIDEIEPD 167
Query: 291 ALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRV 350
++IDSIQTVY VA + G + QV+ECT +R AK I +L GHVTK G IAGPR+
Sbjct: 168 FIVIDSIQTVYHGAVASAPGSVSQVRECTGHFMRIAKMKGIATVLVGHVTKEGAIAGPRL 227
Query: 351 LEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQH 410
LEH+VD VLY EGE+ SYRLLR+VKNRFGST+E+G+FEM + GL V+NPS++FLSE+
Sbjct: 228 LEHMVDCVLYFEGERHHSYRLLRAVKNRFGSTNEIGIFEMRESGLVEVNNPSELFLSERP 287
Query: 411 SDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVS--RHVNGIQASRADMIISVLMKQA 468
+AG V M+G+R L+E+QAL S + S R G +R +II+VL K+
Sbjct: 288 LG---VAGSTVVASMEGTRPVLVELQALVSSTNFPSPRRMATGFDHNRLSLIIAVLEKRM 344
Query: 469 GLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPI-PNGIAFIGEIGLGGELRM 527
G+ LQ +LNV GV L E A DLAVA +I SSF E P P + F GE+GL GE+R
Sbjct: 345 GMFLQNQDAYLNVAGGVKLDEPAVDLAVAVSIASSFREQPTQPFDVVF-GEVGLTGEVRG 403
Query: 528 VSRMEKRVSTVAKLGYRKCIVPKSAEK 554
VSR+++RV KLG+R+ I+P+ + K
Sbjct: 404 VSRVDQRVREAEKLGFRRVILPQKSLK 430
>gi|347751621|ref|YP_004859186.1| DNA repair protein RadA [Bacillus coagulans 36D1]
gi|347584139|gb|AEP00406.1| DNA repair protein RadA [Bacillus coagulans 36D1]
Length = 456
Score = 346 bits (888), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 191/438 (43%), Positives = 271/438 (61%), Gaps = 20/438 (4%)
Query: 116 WVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRLLEV 175
+VC +CGY +W G C C M +E +R PE + +
Sbjct: 8 FVCQNCGYESPKWMGKCPQCSQWNQM-------VEEAETPKRRGFFLHPEPGNETKAAPI 60
Query: 176 NKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVH 235
+ + R + FG E+ RVLGGG+V GSLVLIGGDPG+GKSTLLLQ+++ +A H
Sbjct: 61 TSIESKEEKRTKVD--FG-ELNRVLGGGIVAGSLVLIGGDPGIGKSTLLLQVSSQLAK-H 116
Query: 236 DLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIID 295
L V+Y+SGEES +Q RADR+ I T+ L++ TD+ I + + L+P ++ID
Sbjct: 117 GLN----VLYISGEESAKQTKLRADRLNIHTDHLYVLPETDLSVIQQAIDELNPGFVVID 172
Query: 296 SIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIV 355
SIQT+Y + + G + QV+E T+ L+R AK N+ + + GHVTK G IAGPRVLEH+V
Sbjct: 173 SIQTIYHPEIQSAPGSVSQVRETTAQLMRTAKTKNVAIFIVGHVTKEGSIAGPRVLEHMV 232
Query: 356 DAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEF 415
D VLY EGE+ ++YR+LR+VKNRFGST+E+ + EM + GL+ V NPS+IFL E+ +
Sbjct: 233 DTVLYFEGERHNAYRILRAVKNRFGSTNEIAILEMKESGLEEVQNPSEIFLEERTKGA-- 290
Query: 416 LAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGLKLQ 473
AG V ++G+R L+EIQAL + R +GI +R +I++VL K+AGL +Q
Sbjct: 291 -AGSTVVASIEGTRPVLVEIQALLAPTFFNMPRRMASGIDYNRVTLIMAVLEKRAGLLIQ 349
Query: 474 ENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEK 533
+L V G+ + E A DLAVA ++ SSF + P IGE+GL GE+R VSR+E+
Sbjct: 350 NQDAYLKVAGGLKVDEPAVDLAVAVSVASSFRDKPTNADDCIIGEVGLTGEVRRVSRIEQ 409
Query: 534 RVSTVAKLGYRKCIVPKS 551
RV AKLG+R+ I+PK+
Sbjct: 410 RVQEAAKLGFRRAIIPKN 427
>gi|417795049|ref|ZP_12442280.1| DNA repair protein RadA [Streptococcus oralis SK255]
gi|334266117|gb|EGL84602.1| DNA repair protein RadA [Streptococcus oralis SK255]
Length = 445
Score = 346 bits (887), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 192/466 (41%), Positives = 282/466 (60%), Gaps = 24/466 (5%)
Query: 117 VCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRLLEVN 176
+C +C Y ++ G C C S + + V T KP ++ V + VN
Sbjct: 1 MCQNCEYNSPKYLGRCPNCGSWSSFVEEVEVAEVKNARVSLTGEKTKPMKLAEVTSINVN 60
Query: 177 KGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHD 236
+ +++ E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ ++ V
Sbjct: 61 RTKTEME-----------EFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSQV-- 107
Query: 237 LGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIIDS 296
V+YVSGEES +QI RA+R+ E +LY+ T+++ + +V+ + P LIIDS
Sbjct: 108 ----GTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSVRAEVERIQPDFLIIDS 163
Query: 297 IQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVD 356
IQT+ ++G G + QV+E T+ L++ AK NI + + GHVTK G +AGPR+LEH+VD
Sbjct: 164 IQTIMSPEISGVQGSVSQVREVTAELMQLAKTNNIAIFIVGHVTKEGTLAGPRMLEHMVD 223
Query: 357 AVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFL 416
VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS++FL E+ +
Sbjct: 224 TVLYFEGERHHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGA--- 280
Query: 417 AGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGLKLQE 474
G ++ V M+G+R L E+QAL R G+ +RA +I++VL K+AGL LQ
Sbjct: 281 TGSSIVVTMEGTRPILAEVQALVTPTMFGNAKRTTTGLDFNRASLIMAVLEKRAGLLLQN 340
Query: 475 NAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKR 534
+L GV L E A DLAVA AI SS+ + P F+GE+GL GE+R V+R+E+R
Sbjct: 341 QDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKPTNPQECFVGELGLTGEIRRVNRIEQR 400
Query: 535 VSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
++ AKLG+ K VPK++ + ++++ IG ++EV+ VF
Sbjct: 401 INEAAKLGFTKIYVPKNSLTGITPP--KEIQVIGVTTIQEVLKEVF 444
>gi|229089214|ref|ZP_04220495.1| DNA repair protein radA [Bacillus cereus Rock3-42]
gi|228694053|gb|EEL47735.1| DNA repair protein radA [Bacillus cereus Rock3-42]
Length = 438
Score = 346 bits (887), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 201/467 (43%), Positives = 283/467 (60%), Gaps = 38/467 (8%)
Query: 118 CSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRLLEV-N 176
C CG QW + E V + +R + + + E +P RL EV
Sbjct: 4 CPGCG----QWNTLVEEMEPVVSSRRLNYANAIQ------------TEVTKPRRLTEVET 47
Query: 177 KGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHD 236
K +++ + E RVLGGG+V GSLVLIGGDPG+GKSTLLLQ+++ +AD
Sbjct: 48 KSEARIETKF-------QEFNRVLGGGIVDGSLVLIGGDPGIGKSTLLLQISSQLAD--- 97
Query: 237 LGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIIDS 296
V+Y+SGEES +QI RADR+ + LF+ S TD++ I ++ ++P ++IDS
Sbjct: 98 --SSYDVLYISGEESAKQIKLRADRLHVNGSNLFVVSETDLQRIATHIEEVNPAFVVIDS 155
Query: 297 IQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVD 356
IQT++L V + G + QV+ECT+ L++ AK IP+ + GHVTK G IAGPR+LEH+VD
Sbjct: 156 IQTIHLPEVTSAPGSVAQVRECTAELMKLAKTKGIPIFIVGHVTKEGAIAGPRMLEHMVD 215
Query: 357 AVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFL 416
AVLY EG++ +YR+LR+VKNRFGST+E+G+FEM +LGL V NPS+IFL E+ +
Sbjct: 216 AVLYFEGDRHHTYRILRAVKNRFGSTNEMGIFEMKELGLAEVLNPSEIFLEERPVG---V 272
Query: 417 AGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVLMKQAGLKLQE 474
AG V M+G+R L+EIQAL S R GI +R +I++VL K+ GL LQ
Sbjct: 273 AGSTVVASMEGTRPVLVEIQALISPTSFGNPRRMATGIDHNRVSLIMAVLEKRTGLLLQN 332
Query: 475 NAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKR 534
+L V G+ L E A DLAVA +I SSF + A IGE+GL GE+R VSR+E+R
Sbjct: 333 QDAYLKVAGGLKLDEPAIDLAVALSIASSFRDKSTAPTDAVIGEVGLTGEIRRVSRIEQR 392
Query: 535 VSTVAKLGYRKCIVPKSAEKSLATLGF-EQMEFIGCKNLKEVINVVF 580
V AKLG+++ I+P+ K+L + +E +G NL E + +
Sbjct: 393 VQEAAKLGFQRAIIPR---KNLGGWTIPDGIEVVGVSNLGEALRLTL 436
>gi|305666077|ref|YP_003862364.1| putative DNA repair protein [Maribacter sp. HTCC2170]
gi|88707511|gb|EAQ99754.1| putative DNA repair protein [Maribacter sp. HTCC2170]
Length = 453
Score = 346 bits (887), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 186/452 (41%), Positives = 276/452 (61%), Gaps = 33/452 (7%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTM------KRYSAGESDEGPVVQRTWLPQKPEE 166
+T + C +CG +W G C AC+ T+ K G ++ P + +E
Sbjct: 5 KTAFFCQNCGSQYAKWVGQCSACKEWNTVVEEVIQKEEKTGWKTPSNTSKKIAKPLRVKE 64
Query: 167 VQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQ 226
+ + L +N + E RVLGGGLVPGSLVL+GG+PGVGKSTL+LQ
Sbjct: 65 ISTEKELRLNA--------------YDLEFNRVLGGGLVPGSLVLLGGEPGVGKSTLILQ 110
Query: 227 MAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQP 286
+A L P +YVSGEES +QI RADR+ +E ++ + T ++I ++++
Sbjct: 111 IA--------LKLPYKTLYVSGEESQKQIKMRADRIQPNSENCYILTETKTQNIFQQIEA 162
Query: 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIA 346
P ++IDSIQT++ + +AG + Q++ECT+ L++FAK+TN PV+L GH+TK G IA
Sbjct: 163 TEPDIVVIDSIQTLHSDYIESAAGSISQIRECTAELIKFAKETNTPVILIGHITKDGSIA 222
Query: 347 GPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFL 406
GP++LEH+VD VL EG++ YR+LR++KNRFGST ELG++EM GL+ V+NPS+I +
Sbjct: 223 GPKILEHMVDTVLQFEGDRNYVYRILRALKNRFGSTAELGIYEMQGNGLREVNNPSEILI 282
Query: 407 SEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVL 464
S+ + E L+G A+A ++G R +IEIQAL + T R G A R +M+++VL
Sbjct: 283 SK---NDEGLSGTAIASTVEGMRPLMIEIQALVSTAVYGTPQRSTTGYNAKRLNMLLAVL 339
Query: 465 MKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGE 524
K+AG KL +FLN+ G+++ + A DLAV +AI SS + PI G+ F E+GL GE
Sbjct: 340 EKRAGFKLGAKDVFLNITGGISVDDPAIDLAVISAILSSNEDIPIEKGVCFAAEVGLAGE 399
Query: 525 LRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSL 556
+R V R+E+R+ KLG+ V K+ + SL
Sbjct: 400 IRPVQRVEQRIMEAEKLGFNTIYVSKNNKISL 431
>gi|86143756|ref|ZP_01062132.1| putative DNA repair protein [Leeuwenhoekiella blandensis MED217]
gi|85829799|gb|EAQ48261.1| putative DNA repair protein [Leeuwenhoekiella blandensis MED217]
Length = 453
Score = 346 bits (887), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 186/453 (41%), Positives = 273/453 (60%), Gaps = 39/453 (8%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTM------KRYSAGESDEGPVVQRTWLPQKPEE 166
+T + C +CG +W G C +C+ T+ K G E +R PQ+ +E
Sbjct: 5 KTTFFCQNCGAQFAKWQGQCTSCKEWNTIAEEVVQKAEKTGWKTETQTTKRVAKPQRIKE 64
Query: 167 VQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQ 226
+ + +N NE+ RVLGGGLVPGSL L+GG+PG+GKSTL+LQ
Sbjct: 65 IDTTKDARLNTE--------------NNELNRVLGGGLVPGSLTLLGGEPGIGKSTLMLQ 110
Query: 227 MAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQP 286
+A L P +YVSGEES +QI RA+R+ E + + T ++I ++V+
Sbjct: 111 IA--------LTLPYTTLYVSGEESAQQIKMRAERINPTAENCLILTETKTQNIFKQVEE 162
Query: 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIA 346
++P +IIDSIQT++ + AG + Q++E T+ L++FAK+T PV+L GH+TK G+IA
Sbjct: 163 VNPDIVIIDSIQTLHSDYIESGAGSISQIRETTTELIKFAKETATPVILIGHITKDGNIA 222
Query: 347 GPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFL 406
GP++LEH+VD VL EG++ YR+LR+ KNRFGST ELG++EM GL+ VSNPS+I +
Sbjct: 223 GPKILEHMVDTVLQFEGDRNHVYRILRAHKNRFGSTSELGIYEMQGSGLREVSNPSEILI 282
Query: 407 SEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVL 464
S+ D L+G A+A ++G R +IEIQAL + T R G A R +MI++VL
Sbjct: 283 SKNDED---LSGTAIAATLEGMRPLMIEIQALVSTAVYGTPQRSATGYNAKRLNMILAVL 339
Query: 465 MKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGE 524
K+AG +L +FLN+ G+++ +TA DLAV AAI SS + + I F E+GL GE
Sbjct: 340 EKRAGFRLGAKDVFLNITGGISVDDTAIDLAVVAAILSSNEDISVAKDICFAAEVGLAGE 399
Query: 525 LRMVSRMEKRVSTVAKLGY------RKCIVPKS 551
+R V+R+E+R+ KLG+ + C VPK+
Sbjct: 400 IRPVTRVEQRILEAEKLGFGTIMISKYCKVPKN 432
>gi|449966234|ref|ZP_21812262.1| DNA repair protein RadA [Streptococcus mutans 15VF2]
gi|449170307|gb|EMB73030.1| DNA repair protein RadA [Streptococcus mutans 15VF2]
Length = 466
Score = 346 bits (887), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 201/471 (42%), Positives = 284/471 (60%), Gaps = 26/471 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T +VC +CGY ++ G C C S + E E V+ + E+ +PV+L
Sbjct: 18 KTTFVCQECGYNSPKYLGRCPNCSSWSSFV-----EEIEVAEVKNARVSLTGEKTRPVKL 72
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
+V R+ + E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ +A
Sbjct: 73 NQVTSSQAT---RVKTNM---EEFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLA 126
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+ V YVSGEES EQI R++R+ E +LY+ T+++ I +++ + P L
Sbjct: 127 N------KGTVFYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQSIRAEIEKIQPDFL 180
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQTV ++ G + QV+E T+ L++ AK NI + GHVTK G +AGPR+LE
Sbjct: 181 IIDSIQTVMSPEISSVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTLAGPRMLE 240
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS++FL E+
Sbjct: 241 HMVDTVLYFEGERQHTFRILRAVKNRFGSTNEIGIFEMRSGGLVEVLNPSQVFLEERLDG 300
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
+ G A+ V M+G+R L E+QAL + R G+ +R +I++VL K+ GL
Sbjct: 301 A---TGSAIVVTMEGTRPILAEVQALVIPTVFGNAKRTTTGLDFNRVSLIMAVLEKRCGL 357
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ +L GV L E A DLAVA AI SS+ E P +IGEIGL GE+R V+R
Sbjct: 358 LLQNQDAYLKSAGGVRLDEPAIDLAVAVAIASSYKEKPTNPQECYIGEIGLTGEIRRVNR 417
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQ-MEFIGCKNLKEVINVVF 580
+E+R++ +KLG+ K VPK+ SL+ L Q ++ IG + EV+ VF
Sbjct: 418 IEQRLNEASKLGFTKIFVPKN---SLSGLTIPQGIQVIGVTTVSEVLKKVF 465
>gi|172056113|ref|YP_001812573.1| DNA repair protein RadA [Exiguobacterium sibiricum 255-15]
gi|171988634|gb|ACB59556.1| DNA repair protein RadA [Exiguobacterium sibiricum 255-15]
Length = 461
Score = 346 bits (887), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 192/443 (43%), Positives = 279/443 (62%), Gaps = 22/443 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQR--TWLPQKPEEVQPV 170
+T +VC CG +W G C C TM E E +R ++ ++++P
Sbjct: 8 KTKFVCQSCGTESPKWMGRCSGCGEWNTM----VEEVVEEKKARRGSAFVHTTTKQLKPE 63
Query: 171 RLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAI 230
RL + + Q + R+ +G E RVLGGG+VPGS+VL+GGDPG+GKST+LLQ +A
Sbjct: 64 RLSNI---LSQEESRV-FTG--SGEFDRVLGGGIVPGSMVLVGGDPGIGKSTILLQTSAR 117
Query: 231 IADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPR 290
+A V+Y+SGEES++Q RA+R+ + T++LF+ S TD+ I V +P
Sbjct: 118 LA-----ARGEKVLYISGEESLKQTKLRAERLGLPTQDLFVLSETDMNMIERVVDEENPA 172
Query: 291 ALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRV 350
LIIDSIQTVY+ + + G + QV+ECT+ L++ AK I + + GHVTK G IAGPR+
Sbjct: 173 FLIIDSIQTVYIDEIQSAPGSVTQVRECTAMLMKIAKSRGIAIFIVGHVTKQGSIAGPRL 232
Query: 351 LEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQH 410
LEH+VDAVLY EGE+ ++R+LR+VKNRFGST+E+G+FEM + GL+ V NPS+IFL E+
Sbjct: 233 LEHMVDAVLYFEGERHHTFRILRAVKNRFGSTNEIGIFEMRESGLEEVLNPSEIFLEERT 292
Query: 411 SDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVLMKQA 468
S ++G + M+G+R+ L+E+QAL S R GI ++ ++++VL K++
Sbjct: 293 SG---VSGSTIVASMEGTRTVLVELQALISPTSFGNPRRMATGIDQNKVALLMAVLEKRS 349
Query: 469 GLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMV 528
GL LQ +L GV L E A DLA+ A+ SSF + P IGE+GL GE+R V
Sbjct: 350 GLLLQTQDAYLKAAGGVKLDEPAIDLAICVAVASSFRDKPTRPTDVVIGEVGLTGEVRRV 409
Query: 529 SRMEKRVSTVAKLGYRKCIVPKS 551
SR+E+RV+ AKLG+ + I+PK+
Sbjct: 410 SRIEQRVAEAAKLGFTRAIIPKN 432
>gi|346225373|ref|ZP_08846515.1| DNA repair protein RadA [Anaerophaga thermohalophila DSM 12881]
Length = 456
Score = 345 bits (886), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 191/443 (43%), Positives = 284/443 (64%), Gaps = 23/443 (5%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGT-MKRYSAGESDEGPVVQRTWLPQKPEEVQPV 170
N+T +VC +CG +W G C AC T ++ + ++ + T+ +K + V PV
Sbjct: 4 NKTVFVCQNCGAESPKWMGKCYACGEWNTFVEEVTITGRNKDRRLSLTFGKEKQKPV-PV 62
Query: 171 RLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAI 230
+ V++ + ++D RI E+ RVLGGGLVPGS+VL+GG+PG+GKSTL+LQMA
Sbjct: 63 SSVFVDE-IPRIDTRI-------EELNRVLGGGLVPGSVVLLGGEPGIGKSTLVLQMAMK 114
Query: 231 IADVHDLGEPSPVVYVSGEESVEQIGNRADRMM-IATEELFLYSSTDIEDIVEKVQPLSP 289
+ ++YVSGEES +QI RADR+ + + L T +E V ++ P
Sbjct: 115 L-------NTRKILYVSGEESPQQIKLRADRLSDVGGDHCLLVGETSLEQTVNHIEHEEP 167
Query: 290 RALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPR 349
+IIDSIQT+ + + G + Q++ECT+++L+ AK+ NIPVLL GH+ K G++AGP+
Sbjct: 168 GLVIIDSIQTMEREALESAPGSVSQIRECTASILKVAKEKNIPVLLIGHINKEGNLAGPK 227
Query: 350 VLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQ 409
VLEHIVD VL EG++ YR+LR+VKNRFGST E+G+FEM GL+ VSNPS++ L+
Sbjct: 228 VLEHIVDVVLQFEGDRHYMYRILRAVKNRFGSTSEIGIFEMLGDGLREVSNPSEMLLA-- 285
Query: 410 HSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMKQ 467
H + E ++G+A+A ++G R F+IE+QAL + + T R G R +M+++VL K+
Sbjct: 286 HHEEE-MSGIAIAAALEGIRPFMIEVQALASTAAYGTPQRSSTGFDLRRLNMLLAVLEKR 344
Query: 468 AGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRM 527
AG KL +FLN+ G+ +++ A DLAV A++ SS + P+P I GE+GL GE+R
Sbjct: 345 AGFKLAAKDVFLNIAGGLKVSDPAIDLAVVASVLSSNTDLPVPREICLTGEVGLSGEIRP 404
Query: 528 VSRMEKRVSTVAKLGYRKCIVPK 550
V+R+E+RVS KLG+R IVPK
Sbjct: 405 VTRIEQRVSEAEKLGFRSIIVPK 427
>gi|335029750|ref|ZP_08523255.1| DNA repair protein RadA [Streptococcus infantis SK1076]
gi|334268274|gb|EGL86716.1| DNA repair protein RadA [Streptococcus infantis SK1076]
Length = 445
Score = 345 bits (886), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 191/467 (40%), Positives = 283/467 (60%), Gaps = 24/467 (5%)
Query: 117 VCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRLLEVN 176
+C +C Y ++ G C C + + + V T KP ++ V + VN
Sbjct: 1 MCQNCEYNSPKYLGRCPNCGAWSSFVEEVEVAEVKNARVSLTGEKTKPMKLAEVTSINVN 60
Query: 177 KGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHD 236
+ +++ E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ ++ V
Sbjct: 61 RTKTEME-----------EFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSQV-- 107
Query: 237 LGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIIDS 296
V+YVSGEES +QI RA+R+ E +LY+ T+++ + +V+ + P LIIDS
Sbjct: 108 ----GTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSVRAEVERIQPNFLIIDS 163
Query: 297 IQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVD 356
IQT+ ++G G + QV+E T+ L++ AK NI + + GHVTK G +AGPR+LEH+VD
Sbjct: 164 IQTIMSPEISGVQGSVSQVREVTAELMQLAKTNNIAIFIVGHVTKEGTLAGPRMLEHMVD 223
Query: 357 AVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFL 416
VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS++FL E+ +
Sbjct: 224 TVLYFEGERHHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSEVFLEERLDGA--- 280
Query: 417 AGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGLKLQE 474
G ++ V M+G+R L E+QAL R G+ +RA +I++VL K+AGL LQ
Sbjct: 281 TGSSIVVTMEGTRPILAEVQALVTPTMFGNAKRTTTGLDFNRASLIMAVLEKRAGLLLQN 340
Query: 475 NAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKR 534
+L GV L E A DLAVA AI SS+ + P F+GE+GL GE+R V+R+E+R
Sbjct: 341 QDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKPTNPQECFVGELGLTGEIRRVNRIEQR 400
Query: 535 VSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVFT 581
++ AKLG+ K VPK++ + ++++ IG ++EV+ VF+
Sbjct: 401 INEAAKLGFTKIYVPKNSLTGIKPP--KEIQVIGVATIQEVLKKVFS 445
>gi|303237950|ref|ZP_07324501.1| DNA repair protein RadA [Prevotella disiens FB035-09AN]
gi|302481868|gb|EFL44912.1| DNA repair protein RadA [Prevotella disiens FB035-09AN]
Length = 459
Score = 345 bits (886), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 191/451 (42%), Positives = 272/451 (60%), Gaps = 24/451 (5%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQR---TWLPQKPEEVQ 168
N+ +VC +CG +W G C C T K + + +R L K V
Sbjct: 4 NKIAYVCDNCGQESSKWIGKCPNCGQWNTFKEIRVAQETAIKIGERLTNNVLGTKKRNVA 63
Query: 169 PVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMA 228
+NK + RI + E+ RVLGGGLV GS+VLIGG+PG+GKSTL LQ
Sbjct: 64 Q----SLNKITSAEEIRI---NMHDEELNRVLGGGLVVGSMVLIGGEPGIGKSTLTLQTI 116
Query: 229 AIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMM-IATEELFLYSSTDIEDIVEKVQPL 287
L V+YVSGEES +QI RA R+ + + + + S T IE I + ++ +
Sbjct: 117 --------LNTNRKVLYVSGEESPQQIKMRAQRIADVLPDNIIILSETSIEKIFQSIKDV 168
Query: 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAG 347
P L++DSIQTV VA SAG + Q++E +ALL+ AK TNIP++L GH+ K G IAG
Sbjct: 169 QPELLVVDSIQTVQTETVASSAGSITQIRESAAALLQLAKTTNIPIILIGHINKEGSIAG 228
Query: 348 PRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLS 407
P+VLEHIVD VL EG++ YR+LRS+KNRFGST ELG++EM Q GL+ VSNPS++ L+
Sbjct: 229 PKVLEHIVDTVLQFEGDQHYMYRILRSIKNRFGSTSELGIYEMQQNGLRPVSNPSELLLT 288
Query: 408 EQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLM 465
+ D L+G+A++ ++G R FLIE QAL + + T R G R +M+++VL
Sbjct: 289 DNLED---LSGVAISSAIEGVRPFLIETQALVSTAAYGTPQRSATGFDQRRLNMLLAVLE 345
Query: 466 KQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGEL 525
K+ G KL + +FLN+ G+ +T+ A DL+V AA+ SS ++ PI G GE+GL GE+
Sbjct: 346 KRVGFKLMQKDVFLNIAGGLRITDMAMDLSVIAAVLSSNVDTPIEKGWCMAGEVGLSGEV 405
Query: 526 RMVSRMEKRVSTVAKLGYRKCIVPKSAEKSL 556
R +SR+E+R++ KLG+ I+PK+ + L
Sbjct: 406 RPISRIEQRIAEAEKLGFAHIIIPKNNAQGL 436
>gi|385839370|ref|YP_005877000.1| DNA repair protein RadA [Lactococcus lactis subsp. cremoris A76]
gi|358750598|gb|AEU41577.1| DNA repair protein RadA [Lactococcus lactis subsp. cremoris A76]
Length = 453
Score = 345 bits (886), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 194/471 (41%), Positives = 280/471 (59%), Gaps = 26/471 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
++++VC +CGY ++ G C C + + + V + KP + V L
Sbjct: 5 KSSFVCQNCGYKSAKYLGRCPNCGEWSSFVEEVEVQEVKNQRVSMSGERSKPMILDEVEL 64
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
+ + LD E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++
Sbjct: 65 FDTPRIETDLD-----------EFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVST--- 110
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
L V+YVSGEES +QI RA+R+ + +LY+ T+++ I +V+ L P L
Sbjct: 111 ---QLASRGRVLYVSGEESAQQIKLRAERLGDIDRDFYLYAETNMQSIRAEVERLKPNFL 167
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQT+ + + G + QV+E T L++ AK +I + GHVTK G +AGPR+LE
Sbjct: 168 IIDSIQTIMTPEIQSTQGSVSQVREVTGELMQIAKTNDIATFIVGHVTKEGQLAGPRMLE 227
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EGE+ +++R+LR+VKNRFGST+E+G+FEM GL V+NPS++FL E+
Sbjct: 228 HMVDTVLYFEGERNNTFRILRAVKNRFGSTNEIGIFEMQGHGLVEVTNPSEVFLEERLEG 287
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
S G A+ ++G+R L+EIQAL R +G+ +R +I++VL K+ GL
Sbjct: 288 S---TGSAIVCALEGTRPILVEIQALTTPTMFGNAKRTTSGLDFNRVSLIMAVLEKRTGL 344
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
+Q +L GV L E A DLAVA A+ SS+ E P FIGEIGL GE+R V+R
Sbjct: 345 LMQNQDAYLKSAGGVKLDEPAIDLAVAVAVASSYKELPTDARECFIGEIGLTGEIRRVTR 404
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGF-EQMEFIGCKNLKEVINVVF 580
+E+R++ AKLG++K PK+ S+ + EQ++ IG L E + +VF
Sbjct: 405 IEQRLNEAAKLGFKKVYAPKN---SIVGIDIPEQIKVIGVTTLTECLKLVF 452
>gi|333029775|ref|ZP_08457836.1| DNA repair protein RadA [Bacteroides coprosuis DSM 18011]
gi|332740372|gb|EGJ70854.1| DNA repair protein RadA [Bacteroides coprosuis DSM 18011]
Length = 455
Score = 345 bits (886), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 187/447 (41%), Positives = 273/447 (61%), Gaps = 35/447 (7%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTM-------KRYSAGESDEGPVVQRTWLPQKPE 165
+T + CS+CGY +W G C C T ++ S SD Q+ LP+ E
Sbjct: 5 KTVYFCSNCGYESIKWVGKCPMCNQWNTFIENKIVEQKSSNSFSDSQK--QKQNLPKLIE 62
Query: 166 EVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLL 225
E+ + +N + E+ RVLGGGLV GSLVL+GG+PG+GKSTL+L
Sbjct: 63 EISTSQEERIN--------------MHDEELNRVLGGGLVSGSLVLLGGEPGIGKSTLVL 108
Query: 226 QMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQ 285
Q I D ++YVSGEES +Q+ RA+R+ ++ ++ T +E I ++
Sbjct: 109 QTVLQIND-------KKILYVSGEESAKQLKLRAERLNKSSTNCYIVCETSLERIFSHIK 161
Query: 286 PLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDI 345
+ P ++IDSIQT+ V S G L QV+EC+ LLR AK+++IP++L GH+ K G I
Sbjct: 162 NVIPDLIVIDSIQTIATEKVDSSPGSLSQVRECSVDLLRLAKESHIPIILIGHINKEGSI 221
Query: 346 AGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIF 405
AGP+VLEHIVD VL EG++ YR+LRS+KNRFGST E+G++EM Q GL+ VSNPS++
Sbjct: 222 AGPKVLEHIVDTVLQFEGDQQHLYRILRSIKNRFGSTSEIGIYEMRQDGLRQVSNPSELL 281
Query: 406 LSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISV 463
LS++H ++G+A+A ++G R FLIE QAL S T R G R +M+++V
Sbjct: 282 LSQEHVG---MSGVAIAAAIEGVRPFLIETQALVSSAVYGTPQRSATGFDTRRMNMLLAV 338
Query: 464 LMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGG 523
L K+ G KL + +FLN+ G+ +++ A DLAV +AI SS ++ I N I GE+GL G
Sbjct: 339 LEKRVGFKLAQKDVFLNIAGGIKVSDPAIDLAVISAILSSNMDVAIDNSICVAGEVGLSG 398
Query: 524 ELRMVSRMEKRVSTVAKLGYRKCIVPK 550
E+R V+R+E+R+ KLG+++ I+PK
Sbjct: 399 EIRPVNRIEQRIKEADKLGFKRFILPK 425
>gi|381186430|ref|ZP_09894000.1| DNA repair protein RadA [Flavobacterium frigoris PS1]
gi|379651274|gb|EIA09839.1| DNA repair protein RadA [Flavobacterium frigoris PS1]
Length = 453
Score = 345 bits (886), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 181/452 (40%), Positives = 281/452 (62%), Gaps = 21/452 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T + C CG +W G C +C+ T+ + + + W + + + +
Sbjct: 5 KTTFFCQSCGAQYAKWQGQCNSCKEWNTIAEEIIQKEE-----KTAWKSESTSKSKAPKP 59
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
L++N+ + R+ + E+ RVLGGG+VPGSL L+GG+PG+GKSTLLLQ++
Sbjct: 60 LKINEIDSTQEIRMDTTDA---ELNRVLGGGIVPGSLTLLGGEPGIGKSTLLLQIS---- 112
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
L P +YVSGEES +QI RA+R+ ++ ++ + T ++I ++++ + P +
Sbjct: 113 ----LKLPYKTLYVSGEESQKQIKMRAERITSVSDNCYILTETKTQNIFKQIEAIEPEIV 168
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQT++ + +AG + Q++E T+ L++FAK+TNIPV+L GH+TK G+IAGP++LE
Sbjct: 169 IIDSIQTLHTDYIESTAGSISQIRETTAELIKFAKETNIPVILIGHITKDGNIAGPKILE 228
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VL EG++ YR+LRS+KNRFGST E+G++EM GL+ VSNPS+I +S H D
Sbjct: 229 HMVDTVLQFEGDRNHVYRILRSLKNRFGSTAEIGIYEMLGSGLREVSNPSEILIS--HKD 286
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
E L+G A+A ++G R +IEIQ+L + T R G A R +MI++VL K+AG
Sbjct: 287 EE-LSGTAIASTLEGMRPLMIEIQSLVSTAVYGTPQRSTTGYNAKRLNMILAVLEKRAGF 345
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
+L +FLN+ G+++ + A DLAV AAI SS + P+ F GE+GL GE+R V+R
Sbjct: 346 RLGAKDVFLNITGGISVDDPAIDLAVVAAILSSNEDIPVNKDFCFAGEVGLSGEIRPVNR 405
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFE 562
+++R+ KLG+ V K + SL G +
Sbjct: 406 VDQRIQEAEKLGFSTIFVSKYNKISLKNTGIK 437
>gi|417916497|ref|ZP_12560075.1| DNA repair protein RadA [Streptococcus mitis bv. 2 str. SK95]
gi|342829574|gb|EGU63925.1| DNA repair protein RadA [Streptococcus mitis bv. 2 str. SK95]
Length = 445
Score = 345 bits (886), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 193/466 (41%), Positives = 283/466 (60%), Gaps = 24/466 (5%)
Query: 117 VCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRLLEVN 176
+C +C Y ++ G C C S + + V T KP ++ V + VN
Sbjct: 1 MCQNCEYNSPKYLGRCPNCGSWSSFIEEIEVAEVKNARVSLTGEKTKPMKLAEVTSINVN 60
Query: 177 KGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHD 236
+ +++ E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ ++ V
Sbjct: 61 RTKTEME-----------EFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSQV-- 107
Query: 237 LGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIIDS 296
V+YVSGEES +QI RA+R+ E +LY+ T+++ + +V+ + P LIIDS
Sbjct: 108 ----GTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSVRAEVERIQPDFLIIDS 163
Query: 297 IQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVD 356
IQT+ ++G G + QV+E T+ L++ AK NI + + GHVTK G +AGPR+LEH+VD
Sbjct: 164 IQTIMSPEISGVQGSVSQVREVTAELMQLAKTNNIAIFIVGHVTKEGTLAGPRMLEHMVD 223
Query: 357 AVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFL 416
VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS++FL E+ +
Sbjct: 224 TVLYFEGERHHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGA--- 280
Query: 417 AGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGLKLQE 474
G ++ V M+G+R L E+QAL R G+ +RA +I++VL K+AGL LQ
Sbjct: 281 TGSSIVVTMEGTRPILAEVQALVTPTMFGNAKRTTTGLDFNRASLIMAVLEKRAGLLLQN 340
Query: 475 NAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKR 534
+L GV L E A DLAVA AI SS+ + P F+GE+GL GE+R V+R+E+R
Sbjct: 341 QDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKPTNPQECFVGELGLTGEIRRVNRIEQR 400
Query: 535 VSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
++ AKLG+ K VPK++ + +++E IG ++EV+ +VF
Sbjct: 401 INEAAKLGFTKIYVPKNSLTGITPP--KEIEVIGVTTIQEVLKMVF 444
>gi|449490033|ref|XP_004158489.1| PREDICTED: DNA repair protein RadA homolog [Cucumis sativus]
Length = 305
Score = 345 bits (886), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 174/261 (66%), Positives = 206/261 (78%), Gaps = 8/261 (3%)
Query: 331 IPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEM 390
+ + GHV KSG++AGPR+LEHIVD VLY+EGEK S +RLLR VKNRFGSTDELGVFEM
Sbjct: 40 VEIFQIGHVNKSGEVAGPRLLEHIVDVVLYVEGEKCSLHRLLRPVKNRFGSTDELGVFEM 99
Query: 391 SQLGLQAVSNPSKIFLSEQHSD--SEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVSRH 448
GL+ VSNPS++F + + + SE L GLAVAV+MDG+++FL+EIQALC S + H
Sbjct: 100 LPSGLEVVSNPSEMFRRDHNGNFNSEHLTGLAVAVVMDGTQTFLLEIQALCSSSRSFDTH 159
Query: 449 VNGIQASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFP 508
VNGIQ RADMIISVLMKQ GLKLQ + IF+NVVSGV LTETAGDLA+A AICSSFLE
Sbjct: 160 VNGIQNRRADMIISVLMKQVGLKLQTSTIFINVVSGVTLTETAGDLAIAMAICSSFLESH 219
Query: 509 IPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIG 568
IPN IAFIGEIGL GELRMV RMEKR++TVAKLG+++C+VPKSA L +G +M+ IG
Sbjct: 220 IPNDIAFIGEIGLSGELRMVGRMEKRINTVAKLGFKRCVVPKSAVNCLGVVGLGEMKLIG 279
Query: 569 CKNLKEVINVVF------TTP 583
C NLK+VIN VF TTP
Sbjct: 280 CTNLKDVINNVFMVRDEVTTP 300
>gi|357060472|ref|ZP_09121240.1| DNA repair protein RadA [Alloprevotella rava F0323]
gi|355375777|gb|EHG23045.1| DNA repair protein RadA [Alloprevotella rava F0323]
Length = 453
Score = 345 bits (886), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 188/472 (39%), Positives = 298/472 (63%), Gaps = 28/472 (5%)
Query: 116 WVCSDCGYTDGQWWGMCRACESVGTMK----RYSAGESDEGPVVQRTWLPQKPEEVQPVR 171
+VCS CG +W G C AC T K R ++ S E + T L + + +P+
Sbjct: 2 YVCSHCGADSPKWIGRCPACGEWNTYKEMTIRPTSPSSAES--IADTALGRGLKRNKPIP 59
Query: 172 LLEVN-KGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAI 230
L+EV+ K + +LD + E+ RVLGGGLVPGSLVL+GG+PG+GKSTLLLQ
Sbjct: 60 LVEVSGKELPRLD-------MHDAELNRVLGGGLVPGSLVLLGGEPGIGKSTLLLQTILH 112
Query: 231 IADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPR 290
+ + V+Y+SGEES +QI RADR+ I+ + L T++E I ++ + P+
Sbjct: 113 LQE--------RVLYISGEESEQQIKLRADRLGISPANILLLCETNMEQIFTHIKNVEPQ 164
Query: 291 ALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRV 350
+++DSIQT+ +AG + Q++EC + LL++AK++++PV+L GH+TK G IAGP+V
Sbjct: 165 LIVVDSIQTMTTESQESAAGSVTQIRECAATLLKYAKESSVPVVLVGHITKDGAIAGPKV 224
Query: 351 LEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQH 410
LEHIVD VL EG++ YR+LRS+KNRFGST ELG++EM GL+ V NPS++ L++ +
Sbjct: 225 LEHIVDTVLQFEGDRHYLYRILRSIKNRFGSTSELGIYEMRTEGLRPVGNPSELLLTQAN 284
Query: 411 SDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMKQA 468
E L+G+A+ ++G R FLIE+QAL + + T R G R +M+++VL K+
Sbjct: 285 ---EGLSGVAICAAIEGVRPFLIEVQALVSTAAYGTPQRSATGFDLRRLNMLLAVLEKRV 341
Query: 469 GLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMV 528
G KL + +FLN+ G+ +T+ A DL+V A++ SS ++ I +A GE+GL GE+R V
Sbjct: 342 GFKLGQKDVFLNIAGGIRVTDPAIDLSVIASVLSSNVDTAIERSVAMAGEVGLSGEIRPV 401
Query: 529 SRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+R+++R++ +KLG+++ ++P+ + K L + +E + + + E + +F
Sbjct: 402 TRIQQRIAEASKLGFQQFLLPEQSMKGL-DIKVPGIELVPVRTVTEALRALF 452
>gi|254555713|ref|YP_003062130.1| DNA repair protein RadA [Lactobacillus plantarum JDM1]
gi|308179694|ref|YP_003923822.1| DNA repair protein RadA [Lactobacillus plantarum subsp. plantarum
ST-III]
gi|380031610|ref|YP_004888601.1| DNA repair protein RadA [Lactobacillus plantarum WCFS1]
gi|418274310|ref|ZP_12889808.1| DNA repair protein RadA [Lactobacillus plantarum subsp. plantarum
NC8]
gi|448820264|ref|YP_007413426.1| DNA repair protein radA [Lactobacillus plantarum ZJ316]
gi|254044640|gb|ACT61433.1| DNA repair protein RadA [Lactobacillus plantarum JDM1]
gi|308045185|gb|ADN97728.1| DNA repair protein RadA [Lactobacillus plantarum subsp. plantarum
ST-III]
gi|342240853|emb|CCC78087.1| DNA repair protein RadA [Lactobacillus plantarum WCFS1]
gi|376009876|gb|EHS83202.1| DNA repair protein RadA [Lactobacillus plantarum subsp. plantarum
NC8]
gi|448273761|gb|AGE38280.1| DNA repair protein radA [Lactobacillus plantarum ZJ316]
Length = 459
Score = 345 bits (885), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 190/477 (39%), Positives = 285/477 (59%), Gaps = 30/477 (6%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTM-KRYSAGESDEGPVVQRTWLPQKPEEVQPVR 171
+T +VCS+CGY+ ++ G C C T+ + + + D V KP+ ++ V
Sbjct: 5 KTQFVCSNCGYSTPRYLGRCPNCGEWNTLTEEHFDTKPDRKSRVSFAGKSAKPQRLKEVS 64
Query: 172 LLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAII 231
L + + +L E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ +
Sbjct: 65 LTKTPRVKTKL-----------KEFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSGQL 113
Query: 232 ADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRA 291
A+ V+YV+GEES Q+ RADR+ +++E+ +LY TD+ +I ++ P
Sbjct: 114 AETG-----GSVLYVTGEESASQVKMRADRLAVSSEDFYLYPETDMSNIRSTIESTHPEF 168
Query: 292 LIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVL 351
++IDS+QT+ + + G + Q++E T+ LL+ AK I + + GHVTK G IAGP++L
Sbjct: 169 VVIDSVQTMQEPDMDSAIGSVSQIREITAELLQIAKTNGITIFIVGHVTKGGAIAGPKIL 228
Query: 352 EHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHS 411
EH+VD VLY EG+ +YR+LR+VKNRFGST+ELG+FEM GL V+NPS+IFL E+
Sbjct: 229 EHMVDTVLYFEGDLHHTYRILRAVKNRFGSTNELGIFEMRTGGLYEVANPSEIFLEERLK 288
Query: 412 DSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAG 469
D+ G A+ V M+G+R L+E+QAL R +G+ +R +I++VL K+A
Sbjct: 289 DA---TGSAIVVSMEGTRPILVEVQALVTPTVFGNAKRTASGLDHNRVSLIMAVLEKRAS 345
Query: 470 LKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVS 529
L LQ +L GV L E A DLA+A ++ SS+ + F+GE+GL GE+R V+
Sbjct: 346 LMLQNQDAYLKAAGGVKLDEPAIDLAIAVSVASSYRDQQTRPSDCFVGEVGLTGEIRRVN 405
Query: 530 RMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFE---QMEFIGCKNLKEVINVVFTTP 583
R+E RV AKLG+++ +PK+ + G++ +E IG LKE + + P
Sbjct: 406 RIESRVGEAAKLGFKRIFIPKNNLQ-----GWDIPTGIEVIGVATLKEALQLALQQP 457
>gi|423312403|ref|ZP_17290340.1| DNA repair protein RadA [Bacteroides vulgatus CL09T03C04]
gi|392688887|gb|EIY82171.1| DNA repair protein RadA [Bacteroides vulgatus CL09T03C04]
Length = 455
Score = 345 bits (885), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 188/470 (40%), Positives = 284/470 (60%), Gaps = 22/470 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T +VC++CG +W G C +C G Y + P +R + + +PV L
Sbjct: 5 KTVYVCTNCGQDSPKWVGKCPSC---GAWNTYVEEIIRKEPANKRPVSGLESVKSKPVTL 61
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
++ G + P + E+ RVLGGGLVPGSLVL+GG+PG+GKSTL+LQ +
Sbjct: 62 NDITGGDE------PRIDMHDEELNRVLGGGLVPGSLVLLGGEPGIGKSTLVLQTVLHLP 115
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
D V+Y+SGEES Q+ RADR+ + + + T +E I ++ P +
Sbjct: 116 D-------KKVLYISGEESARQLKLRADRIPHNSSDCLIVCETSLEQIYVHIKNTQPDLV 168
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQT+ + S G L+QV+EC++++L+FAK+TN PV+L GH+ K G IAGP+VLE
Sbjct: 169 IIDSIQTISTETIDSSPGSLVQVRECSASILKFAKETNTPVILIGHINKEGSIAGPKVLE 228
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
HIVD VL EG++ YR+LRS+KNRFGST ELG++EM Q GL+ VSNPS++ LS+ H
Sbjct: 229 HIVDTVLQFEGDQHYMYRILRSIKNRFGSTAELGIYEMRQNGLRQVSNPSELLLSQDH-- 286
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
+ ++G+A+A ++G R FLIE QAL S R G R +M+++VL K+ G
Sbjct: 287 -DGMSGVAIASAIEGVRPFLIETQALVSSAVYGNPQRSATGFDLRRMNMLLAVLEKRVGF 345
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
KL + +FLN+ G+ + + A DL+V +AI SS ++ I GE+GL GE+R V+R
Sbjct: 346 KLAQKDVFLNIAGGLKVNDPAIDLSVISAILSSNMDTEIERDTCMAGEVGLSGEIRPVNR 405
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+E+R+ KLG+++ ++PK + + T ++E I + ++E +F
Sbjct: 406 IEQRIGEAEKLGFKQILIPKHNLQGMDTSKL-KIEIIPVRKVEEAFRALF 454
>gi|449909441|ref|ZP_21794263.1| DNA repair protein RadA [Streptococcus mutans OMZ175]
gi|449261382|gb|EMC58859.1| DNA repair protein RadA [Streptococcus mutans OMZ175]
Length = 466
Score = 345 bits (885), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 201/471 (42%), Positives = 283/471 (60%), Gaps = 26/471 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T +VC +CGY ++ G C C S + E E V+ + E+ +PV+L
Sbjct: 18 KTTFVCQECGYNSPKYLGRCPNCSSWSSFV-----EEIEVAEVKNARVSLTGEKTRPVKL 72
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
+V R+ + E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ +A
Sbjct: 73 NQVTSSQAT---RVKTNM---EEFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLA 126
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+ V YVSGEES EQI R++R+ E +LY+ T+++ I +++ + P L
Sbjct: 127 N------KGTVFYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQSIRAEIEKIQPDFL 180
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQTV ++ G + QV+E T+ L++ AK NI + GHVTK G +AGPR+LE
Sbjct: 181 IIDSIQTVMSPEISSVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTLAGPRMLE 240
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS++FL E+
Sbjct: 241 HMVDTVLYFEGERQHTFRILRAVKNRFGSTNEIGIFEMRSGGLVEVLNPSQVFLKERLDG 300
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
+ G A+ V M+G+R L E+QAL R G+ +R +I++VL K+ GL
Sbjct: 301 A---TGSAIVVTMEGTRPILAEVQALVTPTVFGNAKRTTTGLDFNRVSLIMAVLEKRCGL 357
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ +L GV L E A DLAVA AI SS+ E P +IGEIGL GE+R V+R
Sbjct: 358 LLQNQDAYLKSAGGVRLDEPAIDLAVAVAIASSYKEKPTTPQECYIGEIGLTGEIRRVNR 417
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQ-MEFIGCKNLKEVINVVF 580
+E+R++ +KLG+ K VPK+ SL+ L Q ++ IG + EV+ VF
Sbjct: 418 IEQRLNEASKLGFTKIFVPKN---SLSGLTIPQGIQVIGVTTVSEVLKKVF 465
>gi|417939190|ref|ZP_12582483.1| DNA repair protein RadA [Streptococcus infantis SK970]
gi|343390635|gb|EGV03215.1| DNA repair protein RadA [Streptococcus infantis SK970]
Length = 445
Score = 345 bits (885), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 191/467 (40%), Positives = 283/467 (60%), Gaps = 24/467 (5%)
Query: 117 VCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRLLEVN 176
+C +C Y ++ G C C + + + V T KP ++ V + VN
Sbjct: 1 MCQNCEYNSPKYLGRCPNCGAWSSFVEEVEVAEVKNARVSLTGEKTKPMKLAEVTSINVN 60
Query: 177 KGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHD 236
+ +++ E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ ++ V
Sbjct: 61 RTKTEME-----------EFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSQV-- 107
Query: 237 LGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIIDS 296
V+YVSGEES +QI RA+R+ E +LY+ T+++ + +V+ + P LIIDS
Sbjct: 108 ----GTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSVRAEVERIQPDFLIIDS 163
Query: 297 IQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVD 356
IQT+ ++G G + QV+E T+ L++ AK NI + + GHVTK G +AGPR+LEH+VD
Sbjct: 164 IQTIMSPEISGVQGSVSQVREVTAELMQLAKTNNIAIFIVGHVTKEGTLAGPRMLEHMVD 223
Query: 357 AVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFL 416
VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS++FL E+ +
Sbjct: 224 TVLYFEGERHHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGA--- 280
Query: 417 AGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGLKLQE 474
G ++ V M+G+R L E+QAL R G+ +RA +I++VL K+AGL LQ
Sbjct: 281 TGSSIVVTMEGTRPILAEVQALVTPTMFGNAKRTTTGLDFNRASLIMAVLEKRAGLLLQN 340
Query: 475 NAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKR 534
+L GV L E A DLAVA AI SS+ + P F+GE+GL GE+R V+R+E+R
Sbjct: 341 QDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKPTNPQECFVGELGLTGEIRRVNRIEQR 400
Query: 535 VSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVFT 581
++ AKLG+ K VPK++ + ++++ IG ++EV+ VF+
Sbjct: 401 INEAAKLGFTKIYVPKNSLTGIKPP--KEIQVIGVTTIQEVLKKVFS 445
>gi|255693209|ref|ZP_05416884.1| DNA repair protein RadA [Bacteroides finegoldii DSM 17565]
gi|260621020|gb|EEX43891.1| DNA repair protein RadA [Bacteroides finegoldii DSM 17565]
Length = 455
Score = 345 bits (885), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 188/470 (40%), Positives = 287/470 (61%), Gaps = 22/470 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T +VCS+CG +W G C +C G Y + PV +R + ++ +P+ L
Sbjct: 5 KTVYVCSNCGQDSPKWVGKCPSC---GEWNTYVEEIVRKEPVNRRPVSGIETQKPKPLAL 61
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
++ + P + +E+ RVLGGGLVPGSLVLIGG+PG+GKSTL++Q +
Sbjct: 62 ADIVADDE------PRINMHDDELNRVLGGGLVPGSLVLIGGEPGIGKSTLVMQTVLHMP 115
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+ ++YVSGEES Q+ RADR+ + + + T +E I ++ +P +
Sbjct: 116 E-------KKILYVSGEESARQLKLRADRLSSISSDCLIVCETSLEQIYVHIKNTNPDLV 168
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQT+ + S G + QV+EC++++LRFAK+T+ PVLL GH+ K G IAGP+VLE
Sbjct: 169 IIDSIQTISTESIESSPGSIAQVRECSASILRFAKETHTPVLLIGHINKEGSIAGPKVLE 228
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
HIVD VL EG++ YR+LRS+KNRFGST ELG++EM Q GL+ VSNPS++ LS+ H
Sbjct: 229 HIVDTVLQFEGDQHYMYRILRSIKNRFGSTAELGIYEMRQDGLRQVSNPSELLLSQDH-- 286
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
E ++G+A+A ++G R FLIE QAL S R G R +M+++VL K+ G
Sbjct: 287 -EGMSGVAIASAIEGIRPFLIETQALVSSAVYGNPQRSATGFDLRRMNMLLAVLEKRVGF 345
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
KL + +FLN+ G+ + + A DL+V +AI SS ++ I + GEIGL GE+R V+R
Sbjct: 346 KLAQKDVFLNIAGGLKVNDPAIDLSVISAILSSNMDAAIEPEVCMAGEIGLSGEIRPVNR 405
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+E+R+ KLG+++ ++PK + + T ++E + + ++E +F
Sbjct: 406 IEQRIGEAEKLGFKRFLLPKYNLQGIDTQKL-KIELVPVRKVEEAFRALF 454
>gi|222056781|ref|YP_002539143.1| DNA repair protein RadA [Geobacter daltonii FRC-32]
gi|221566070|gb|ACM22042.1| DNA repair protein RadA [Geobacter daltonii FRC-32]
Length = 448
Score = 345 bits (885), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 201/472 (42%), Positives = 285/472 (60%), Gaps = 29/472 (6%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVR 171
+T + C CGY +W G C C + TM+ A +S G R LP P
Sbjct: 3 TKTLYSCQKCGYQSAKWLGRCPDCGAWNTMEEEVAIKS--GAAASRA-LPGGPP------ 53
Query: 172 LLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAII 231
L +N+ + + +P +G+ +E RVLGGGLV GSLVLIGGDPG+GKSTLLLQ
Sbjct: 54 -LPINQVGGEAEMHLP-TGI--SEFDRVLGGGLVAGSLVLIGGDPGIGKSTLLLQA---- 105
Query: 232 ADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRA 291
++ + + V+YVSGEES QI R RM + L++ + T +E+I+ + + P+A
Sbjct: 106 --MNHVAKTGTVLYVSGEESARQIKLRGARMGVNAPGLYVLAETALENILAHIARMQPKA 163
Query: 292 LIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVL 351
++IDSIQT++ G+ + G + QV+E L+ AK + IPV + GHVTK G IAGPRVL
Sbjct: 164 IVIDSIQTIFTSGLESAPGSVSQVRETAGRLMIMAKGSGIPVFIVGHVTKDGAIAGPRVL 223
Query: 352 EHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHS 411
EH+VD VLY EG+ +R+LR+VKNRFGST+E+GVFEM + GL V NPS++FLSE+
Sbjct: 224 EHLVDTVLYFEGDSGHPFRILRAVKNRFGSTNEIGVFEMKEGGLCEVRNPSELFLSERPM 283
Query: 412 DSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVS---RHVNGIQASRADMIISVLMKQA 468
+ +G V ++GSR L+E+QAL VS S++ R G+ R ++++VL K+
Sbjct: 284 GA---SGSVVVASLEGSRPVLVELQAL-VSASSLGVPRRTTIGVDHHRLSLLVAVLEKKV 339
Query: 469 GLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMV 528
GL L IFLNV GV L E A DL + A+ SS L+ PI +GE+GL GE+R +
Sbjct: 340 GLSLAGQDIFLNVAGGVKLNEPAADLGMVVAVASSHLDKPIAGNTLLLGEVGLTGEVRGI 399
Query: 529 SRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
++ E RV AKLG+ +CI+P K + G +E IG K++ E ++ VF
Sbjct: 400 TQPELRVKEAAKLGFSRCILPAGNLKQVKAKG---LELIGVKSVDEALDKVF 448
>gi|150004592|ref|YP_001299336.1| DNA repair protein RadA [Bacteroides vulgatus ATCC 8482]
gi|294776744|ref|ZP_06742208.1| DNA repair protein RadA [Bacteroides vulgatus PC510]
gi|319643590|ref|ZP_07998210.1| DNA repair protein radA [Bacteroides sp. 3_1_40A]
gi|345518469|ref|ZP_08797919.1| DNA repair protein RadA [Bacteroides sp. 4_3_47FAA]
gi|149933016|gb|ABR39714.1| putative DNA repair protein [Bacteroides vulgatus ATCC 8482]
gi|254835863|gb|EET16172.1| DNA repair protein RadA [Bacteroides sp. 4_3_47FAA]
gi|294449399|gb|EFG17935.1| DNA repair protein RadA [Bacteroides vulgatus PC510]
gi|317384759|gb|EFV65718.1| DNA repair protein radA [Bacteroides sp. 3_1_40A]
Length = 455
Score = 345 bits (885), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 188/470 (40%), Positives = 284/470 (60%), Gaps = 22/470 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T +VC++CG +W G C +C G Y + P +R + + +PV L
Sbjct: 5 KTVYVCTNCGQDSPKWVGKCPSC---GAWNTYVEEIIRKEPANKRPVSGLESVKSKPVTL 61
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
++ G + P + E+ RVLGGGLVPGSLVL+GG+PG+GKSTL+LQ +
Sbjct: 62 NDITGGDE------PRIDMHDEELNRVLGGGLVPGSLVLLGGEPGIGKSTLVLQTVLHLP 115
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
D V+Y+SGEES Q+ RADR+ + + + T +E I ++ P +
Sbjct: 116 D-------KKVLYISGEESARQLKLRADRIPHNSSDCLIVCETSLEQIYVHIKNTRPDLV 168
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQT+ + S G L+QV+EC++++L+FAK+TN PV+L GH+ K G IAGP+VLE
Sbjct: 169 IIDSIQTISTETIDSSPGSLVQVRECSASILKFAKETNTPVILIGHINKEGSIAGPKVLE 228
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
HIVD VL EG++ YR+LRS+KNRFGST ELG++EM Q GL+ VSNPS++ LS+ H
Sbjct: 229 HIVDTVLQFEGDQHYMYRILRSIKNRFGSTAELGIYEMRQNGLRQVSNPSELLLSQDH-- 286
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
+ ++G+A+A ++G R FLIE QAL S R G R +M+++VL K+ G
Sbjct: 287 -DGMSGVAIASAIEGVRPFLIETQALVSSAVYGNPQRSATGFDLRRMNMLLAVLEKRVGF 345
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
KL + +FLN+ G+ + + A DL+V +AI SS ++ I GE+GL GE+R V+R
Sbjct: 346 KLAQKDVFLNIAGGLKVNDPAIDLSVISAILSSNMDTEIERDTCMAGEVGLSGEIRPVNR 405
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+E+R+ KLG+++ ++PK + + T ++E I + ++E +F
Sbjct: 406 IEQRIGEAEKLGFKQILIPKHNLQGMDTSKL-KIEIIPVRKVEEAFRALF 454
>gi|419842520|ref|ZP_14365860.1| DNA repair protein RadA [Streptococcus infantis ATCC 700779]
gi|385703746|gb|EIG40856.1| DNA repair protein RadA [Streptococcus infantis ATCC 700779]
Length = 445
Score = 345 bits (885), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 191/467 (40%), Positives = 283/467 (60%), Gaps = 24/467 (5%)
Query: 117 VCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRLLEVN 176
+C +C Y ++ G C C + + + V T KP ++ V + VN
Sbjct: 1 MCQNCEYNSPKYLGRCPNCGAWSSFVEEVEVAEVKNARVSLTGEKTKPMKLAEVTSINVN 60
Query: 177 KGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHD 236
+ +++ E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ ++ V
Sbjct: 61 RTKTEME-----------EFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSQV-- 107
Query: 237 LGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIIDS 296
V+YVSGEES +QI RA+R+ E +LY+ T+++ + +V+ + P LIIDS
Sbjct: 108 ----GTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSVRAEVERIQPDFLIIDS 163
Query: 297 IQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVD 356
IQT+ ++G G + QV+E T+ L++ AK NI + + GHVTK G +AGPR+LEH+VD
Sbjct: 164 IQTIMSPEISGVQGSVSQVREVTAELMQLAKTNNIAIFIVGHVTKEGTLAGPRMLEHMVD 223
Query: 357 AVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFL 416
VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS++FL E+ +
Sbjct: 224 TVLYFEGERHHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSEVFLEERLDGA--- 280
Query: 417 AGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGLKLQE 474
G ++ V M+G+R L E+QAL R G+ +RA +I++VL K+AGL LQ
Sbjct: 281 TGSSIVVTMEGTRPILAEVQALVTPTMFGNAKRTTTGLDFNRASLIMAVLEKRAGLLLQN 340
Query: 475 NAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKR 534
+L GV L E A DLAVA AI SS+ + P F+GE+GL GE+R V+R+E+R
Sbjct: 341 QDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKPTNPQECFVGELGLTGEIRRVNRIEQR 400
Query: 535 VSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVFT 581
++ AKLG+ K VPK++ + ++++ IG ++EV+ VF+
Sbjct: 401 INEAAKLGFTKIYVPKNSLTGIKPP--KEIQVIGVTTIQEVLKKVFS 445
>gi|300769734|ref|ZP_07079616.1| DNA repair protein RadA [Lactobacillus plantarum subsp. plantarum
ATCC 14917]
gi|300492642|gb|EFK27828.1| DNA repair protein RadA [Lactobacillus plantarum subsp. plantarum
ATCC 14917]
Length = 469
Score = 345 bits (885), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 190/477 (39%), Positives = 285/477 (59%), Gaps = 30/477 (6%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTM-KRYSAGESDEGPVVQRTWLPQKPEEVQPVR 171
+T +VCS+CGY+ ++ G C C T+ + + + D V KP+ ++ V
Sbjct: 15 KTQFVCSNCGYSTPRYLGRCPNCGEWNTLTEEHFDTKPDRKSRVSFAGKSAKPQRLKEVS 74
Query: 172 LLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAII 231
L + + +L E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ +
Sbjct: 75 LTKTPRVKTKL-----------KEFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSGQL 123
Query: 232 ADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRA 291
A+ V+YV+GEES Q+ RADR+ +++E+ +LY TD+ +I ++ P
Sbjct: 124 AETG-----GSVLYVTGEESASQVKMRADRLAVSSEDFYLYPETDMSNIRSTIESTHPEF 178
Query: 292 LIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVL 351
++IDS+QT+ + + G + Q++E T+ LL+ AK I + + GHVTK G IAGP++L
Sbjct: 179 VVIDSVQTMQEPDMDSAIGSVSQIREITAELLQIAKTNGITIFIVGHVTKGGAIAGPKIL 238
Query: 352 EHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHS 411
EH+VD VLY EG+ +YR+LR+VKNRFGST+ELG+FEM GL V+NPS+IFL E+
Sbjct: 239 EHMVDTVLYFEGDLHHTYRILRAVKNRFGSTNELGIFEMRTGGLYEVANPSEIFLEERLK 298
Query: 412 DSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAG 469
D+ G A+ V M+G+R L+E+QAL R +G+ +R +I++VL K+A
Sbjct: 299 DA---TGSAIVVSMEGTRPILVEVQALVTPTVFGNAKRTASGLDHNRVSLIMAVLEKRAS 355
Query: 470 LKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVS 529
L LQ +L GV L E A DLA+A ++ SS+ + F+GE+GL GE+R V+
Sbjct: 356 LMLQNQDAYLKAAGGVKLDEPAIDLAIAVSVASSYRDQQTRPSDCFVGEVGLTGEIRRVN 415
Query: 530 RMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFE---QMEFIGCKNLKEVINVVFTTP 583
R+E RV AKLG+++ +PK+ + G++ +E IG LKE + + P
Sbjct: 416 RIESRVGEAAKLGFKRIFIPKNNLQ-----GWDIPTGIEVIGVATLKEALQLALQQP 467
>gi|392392053|ref|YP_006428655.1| DNA repair protein RadA [Desulfitobacterium dehalogenans ATCC
51507]
gi|390523131|gb|AFL98861.1| DNA repair protein RadA [Desulfitobacterium dehalogenans ATCC
51507]
Length = 449
Score = 345 bits (885), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 205/471 (43%), Positives = 284/471 (60%), Gaps = 31/471 (6%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T + C CG +W G C C T+ V++R+ + P V+ L
Sbjct: 5 KTRFFCQSCGQESPRWLGKCPGCGEWNTLVE---------EVLERSTAKRTPSGVKATPL 55
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
E+ + + R+ SG E+ RVLGGG+VPGS VL+GG+PG+GKSTLLLQ A ++A
Sbjct: 56 TEIQI---REEERVS-SG--SQELNRVLGGGIVPGSFVLLGGEPGIGKSTLLLQTAGLLA 109
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
V D V+Y++GEES +QI RA+R+ I L + + T +E + + V + P L
Sbjct: 110 KVMD------VLYITGEESEKQIKLRAERLGIKESRLHILTETRLEIVRDVVMVMQPGLL 163
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
I+DSIQT+ L + +AG + QV+E + L+R AK+ IPV L GHVTK G IAGPRVLE
Sbjct: 164 IVDSIQTMVLEDLQAAAGSVSQVREGAAFLMRLAKEEEIPVFLVGHVTKEGAIAGPRVLE 223
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
HIVD VLY EG++ YRLLR+VKNRFGST+E+GVFEM + GL VSNPSK+FL E S
Sbjct: 224 HIVDTVLYFEGDRHHVYRLLRAVKNRFGSTNEIGVFEMHEDGLVEVSNPSKVFLGENSST 283
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVS---RHVNGIQASRADMIISVLMKQAG 469
+ G +VAV+M+GSR L+EIQAL V+ +T R GI +R M+++VL K+ G
Sbjct: 284 A---PGSSVAVVMEGSRPLLVEIQAL-VTPTTYGPPRRTATGIDYNRILMLLAVLDKKVG 339
Query: 470 LKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVS 529
L +F+N+ G+ + E DLA AAI SS E P+ A IGE+GL GE+R +S
Sbjct: 340 FHLGAQDVFINIAGGIRIEEPGVDLACIAAIASSLGERPLKR-YALIGEVGLTGEVRGIS 398
Query: 530 RMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
++E RV KLG+ CIVP+ ++ G I K ++E + V+F
Sbjct: 399 QIENRVKEAVKLGFEGCIVPQINFSAVKAPG--NFTVIPVKTVEEAVRVMF 447
>gi|332291579|ref|YP_004430188.1| DNA repair protein RadA [Krokinobacter sp. 4H-3-7-5]
gi|332169665|gb|AEE18920.1| DNA repair protein RadA [Krokinobacter sp. 4H-3-7-5]
Length = 456
Score = 345 bits (885), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 182/443 (41%), Positives = 270/443 (60%), Gaps = 24/443 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T + C +CG +W G C AC+ T+ ++D ++ W K E + L
Sbjct: 5 KTTFFCQNCGTQHAKWQGQCNACKQWNTIVEEVVQKAD-----KKDW---KSETAKVSGL 56
Query: 173 LEVNKGMKQLDWRIPLSGLFGN---EVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAA 229
+K +K D E+ RVLGGGLVPGSL L+GG+PG+GKSTLLLQ++
Sbjct: 57 TRTSKPLKIADISTASEARMNTKNGELNRVLGGGLVPGSLTLLGGEPGIGKSTLLLQIS- 115
Query: 230 IIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSP 289
L P +YVSGEES +QI RA+R+ +++ ++ + T ++I ++ + P
Sbjct: 116 -------LALPYKTLYVSGEESQQQIKMRAERINPESDQCYILTETKTQNIFRHIEEMQP 168
Query: 290 RALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPR 349
+I+DSIQT++ + +AG + Q++E TS L+RFAK+T PV+L GH+TK G+IAGP+
Sbjct: 169 DIVIVDSIQTLHSDHIESTAGSISQIRETTSELIRFAKETATPVILIGHITKDGNIAGPK 228
Query: 350 VLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQ 409
+LEH+VD VL EG++ YR+LR+ KNRFGST ELG++EM GL+ VSNPS+I +S+
Sbjct: 229 ILEHMVDTVLQFEGDRNHVYRILRAHKNRFGSTSELGIYEMQGSGLREVSNPSEILISKN 288
Query: 410 HSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQ 467
D L+G A+A M+G R +IEIQAL + T R G R +M+++VL K+
Sbjct: 289 DED---LSGTAIATTMEGMRPLMIEIQALVSTAVYGTPQRSSTGYNVKRLNMLLAVLEKR 345
Query: 468 AGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRM 527
AG KL +FLNV G+ + + A DLAV AA+ SS ++ P+ + F EIGL GE+R
Sbjct: 346 AGFKLGAKDVFLNVTGGITVDDPAIDLAVVAAVLSSNVDIPVDKSMCFAAEIGLAGEVRP 405
Query: 528 VSRMEKRVSTVAKLGYRKCIVPK 550
V+R+E+R+ KLG+ ++ K
Sbjct: 406 VNRIEQRIVEAEKLGFTSIVISK 428
>gi|270291203|ref|ZP_06197426.1| DNA repair protein RadA [Pediococcus acidilactici 7_4]
gi|304385488|ref|ZP_07367833.1| DNA repair protein RadA [Pediococcus acidilactici DSM 20284]
gi|418069764|ref|ZP_12707041.1| DNA repair protein RadA [Pediococcus acidilactici MA18/5M]
gi|270280599|gb|EFA26434.1| DNA repair protein RadA [Pediococcus acidilactici 7_4]
gi|304328695|gb|EFL95916.1| DNA repair protein RadA [Pediococcus acidilactici DSM 20284]
gi|357536295|gb|EHJ20326.1| DNA repair protein RadA [Pediococcus acidilactici MA18/5M]
Length = 456
Score = 345 bits (885), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 193/476 (40%), Positives = 287/476 (60%), Gaps = 31/476 (6%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTM--KRYSAGESDEGPVVQRTWLPQKPEEVQPV 170
+T +VC++CGY ++ G C C T+ +R S +++ V +P+ + V
Sbjct: 5 KTQFVCNNCGYASPKFLGRCPNCGKWNTLVEERMSDPKAERKSRVSFDGKHTQPQLISDV 64
Query: 171 RLLE---VNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQM 227
+ E V GM++L+ RVLGGG+V GSLVLIGGDPG+GKSTLLLQ+
Sbjct: 65 AMHEEPRVKTGMEELN--------------RVLGGGVVDGSLVLIGGDPGIGKSTLLLQL 110
Query: 228 AAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPL 287
+ +A+ V+YVSGEES QI RA+R+ + +E +LY TD+ + ++ L
Sbjct: 111 SGQLAETQ-----RKVLYVSGEESASQIKMRAERLKVNSERFYLYPETDMSSVRAVIEEL 165
Query: 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAG 347
P +IIDS+QT+ + + G + Q++E T+ L++ AK NI + + GHVTK G IAG
Sbjct: 166 HPEYVIIDSVQTMQEPDIESAVGSVSQIREITAELMQIAKTNNITIFIVGHVTKGGAIAG 225
Query: 348 PRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLS 407
P++LEH+VD VLY EG+ +YR+LR+VKNRFGST+ELG+FEM + GL+ V+NPS+IFL
Sbjct: 226 PKILEHMVDTVLYFEGDLHHTYRILRAVKNRFGSTNELGIFEMREEGLREVANPSEIFLE 285
Query: 408 EQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLM 465
E+ D+ +G A+ V M+G+R L+EIQAL R +G+ +R +I++VL
Sbjct: 286 ERLKDA---SGSAIVVSMEGTRPILVEIQALITPTIFGNAQRTASGLDRNRVSLIMAVLE 342
Query: 466 KQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGEL 525
K+A L LQ +L GV L E A DLA+A +I SSF +F+GEIGL GE+
Sbjct: 343 KRAKLTLQNQDAYLKAAGGVKLDEPAIDLALAISIVSSFKNQGTRPTDSFVGEIGLTGEI 402
Query: 526 RMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVFT 581
R V+R+E+RV+ KLG+++ ++PK+ K E +E +G + + I F
Sbjct: 403 RRVNRIEQRVAEAQKLGFKRILIPKNNLKGWQPP--EGIEVVGVATIADAIRRAFN 456
>gi|148262213|ref|YP_001228919.1| DNA repair protein RadA [Geobacter uraniireducens Rf4]
gi|146395713|gb|ABQ24346.1| DNA repair protein RadA [Geobacter uraniireducens Rf4]
Length = 453
Score = 345 bits (884), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 197/471 (41%), Positives = 276/471 (58%), Gaps = 26/471 (5%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVR 171
+T + C CGY +W G C C S T++ ++ V LP P
Sbjct: 7 TKTVYACQKCGYQSAKWLGRCPDCNSWNTLEEELQLKTGLQSGVSSPDLPPLP------- 59
Query: 172 LLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAII 231
+++ + + R+P +G+ +E RVLGGGLV GSLVLIGGDPG+GKSTLLLQ
Sbjct: 60 ---ISQVGGEAEMRLP-TGI--SEFDRVLGGGLVAGSLVLIGGDPGIGKSTLLLQ----- 108
Query: 232 ADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRA 291
A H V+YVSGEES QI R RM + +LF+ + T +E I+ Q + P+A
Sbjct: 109 ATDHFAKASGSVLYVSGEESARQIKLRGARMGVNASDLFILAETSLEKILTHAQRMQPKA 168
Query: 292 LIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVL 351
L++DSIQTV+ + + G + QV+E L+ AK + IPV L GHVTK G IAGPRVL
Sbjct: 169 LVVDSIQTVFTSALESAPGSVSQVRETAGRLMMLAKGSGIPVFLVGHVTKDGSIAGPRVL 228
Query: 352 EHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHS 411
EH+VD VLY EG+ +R+LR+VKNRFGST+E+GVFEM + GL V NPS++FLSE+
Sbjct: 229 EHLVDTVLYFEGDSGHPFRILRAVKNRFGSTNEIGVFEMKEGGLFEVKNPSELFLSERPL 288
Query: 412 DSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMKQAG 469
++G V ++GSR L+E+QAL + S R G+ +R ++++VL K+ G
Sbjct: 289 G---VSGSVVVATLEGSRPLLVELQALVTASSLGVPRRTTIGVDHNRLSLLVAVLEKKVG 345
Query: 470 LKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVS 529
L L IFLNV GV L E A DL + A+ SS L+ + +GE+GL GE+R ++
Sbjct: 346 LTLSGQDIFLNVAGGVKLNEPAADLGMVTAVASSHLDKTVDQHTLLLGEVGLAGEVRGIT 405
Query: 530 RMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+ E RV AKLG+ +CI+P K + G ME IG ++++E + F
Sbjct: 406 QPELRVKEAAKLGFSRCILPAGNLKQVKAKG---MELIGVRSVEETLEKAF 453
>gi|327313541|ref|YP_004328978.1| DNA repair protein RadA [Prevotella denticola F0289]
gi|326946371|gb|AEA22256.1| DNA repair protein RadA [Prevotella denticola F0289]
Length = 466
Score = 345 bits (884), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 199/481 (41%), Positives = 285/481 (59%), Gaps = 31/481 (6%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMK--RYSAGESDEGPVVQRTWLPQKP--EEV 167
++ +VCS+CG +W G C C T K R +A + T L E V
Sbjct: 4 DKIAYVCSNCGQESAKWIGKCPNCGQWNTFKEIRIAADTGSQAARHAATTLRNAASGEAV 63
Query: 168 -----QPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKST 222
+P RL +V+ + P + E+ RVLGGGLVPGS+VL+GG+PG+GKST
Sbjct: 64 SALANKPQRLRDVSSHDE------PRIDMHDGELNRVLGGGLVPGSIVLLGGEPGIGKST 117
Query: 223 LLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMI-ATEELFLYSSTDIEDIV 281
L LQ L V+YVSGEES QI RA R+ E + + S T +E I
Sbjct: 118 LTLQTI--------LHMTQHVLYVSGEESPHQIKMRAVRITKDIAENVIILSETSLERIF 169
Query: 282 EKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTK 341
E ++ + P ++IDSIQT+ V S G + QV+EC SALLRFAK + +PV+L GH+ K
Sbjct: 170 EHIRDVQPELVVIDSIQTISTEDVDSSPGSITQVRECASALLRFAKTSGVPVILIGHINK 229
Query: 342 SGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNP 401
G IAGP++LEHIVD V+ EG++ YR+LRS+KNRFGST ELG++EM Q GL+ VSNP
Sbjct: 230 EGSIAGPKILEHIVDTVIQFEGDQHYMYRILRSIKNRFGSTSELGIYEMEQQGLRQVSNP 289
Query: 402 SKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADM 459
S++ L+E H + L+G+A++ ++G R FL+E QAL S + T R G R +M
Sbjct: 290 SELLLTEDH---DGLSGVAISSTIEGVRPFLVETQALVSSAAYGTPQRSATGFDQRRLNM 346
Query: 460 IISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEI 519
+++VL K+ G KL + +FLN+ G+ +T+ A DL+V AA+ SS ++ PI G GE+
Sbjct: 347 LLAVLEKRVGFKLMQKDVFLNIAGGLRVTDMAMDLSVIAAVLSSNVDTPIEQGWCMCGEV 406
Query: 520 GLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVV 579
GL GE+R VSR+E+R++ KLG+ I+PK LA G ++ + ++E + +
Sbjct: 407 GLSGEVRPVSRIEQRIAEAEKLGFSHIILPKYNLSGLA--GKYSIQLHPVRKVEEALRNL 464
Query: 580 F 580
F
Sbjct: 465 F 465
>gi|260591188|ref|ZP_05856646.1| DNA repair protein RadA [Prevotella veroralis F0319]
gi|260537053|gb|EEX19670.1| DNA repair protein RadA [Prevotella veroralis F0319]
Length = 466
Score = 345 bits (884), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 197/484 (40%), Positives = 285/484 (58%), Gaps = 37/484 (7%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMK--RYSAGESDEGPVVQRTWLPQKPEEV-- 167
++ +VCS+CG +W G C C T K R SA D G R V
Sbjct: 4 DKIAYVCSNCGQESAKWIGKCPNCGQWNTFKEIRISA---DTGTHAARQAATSLRHGVAV 60
Query: 168 --------QPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVG 219
+P RL +V+ + P + E+ RVLGGGLVPGS+VL+GG+PG+G
Sbjct: 61 GAVSGLANKPQRLRDVSAKDE------PRMDMHDGELNRVLGGGLVPGSIVLLGGEPGIG 114
Query: 220 KSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIAT-EELFLYSSTDIE 278
KSTL LQ L ++YVSGEES QI RA+R+ E + + S T +E
Sbjct: 115 KSTLTLQTI--------LHLSQRILYVSGEESPHQIRMRAERITKDIPENIIILSETSLE 166
Query: 279 DIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGH 338
I E ++ + P +++DSIQT+ V S G + QV+EC SALLRFAK + +PV+L GH
Sbjct: 167 HIFEHIKDVKPELIVVDSIQTISTEDVDSSPGSVTQVRECASALLRFAKTSGVPVVLIGH 226
Query: 339 VTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAV 398
+ K G IAGP++LEHIVD V+ EG++ YR+LRS+KNRFGST ELG++EM Q GL+ V
Sbjct: 227 INKEGSIAGPKILEHIVDTVIQFEGDQHYMYRILRSIKNRFGSTSELGIYEMEQQGLRQV 286
Query: 399 SNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASR 456
SNPS++ L+E H + L+G+A++ ++G R FL+E QAL S + T R G R
Sbjct: 287 SNPSELLLTEDH---DGLSGVAISSTIEGVRPFLVETQALVSSAAYGTPQRSATGFDQRR 343
Query: 457 ADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFI 516
+M+++VL K+ G KL + +FLN+ G+ +T+ A DL+V AA+ SS ++ PI G
Sbjct: 344 LNMLLAVLEKRVGFKLMQKDVFLNIAGGLRVTDMAMDLSVIAAVLSSNVDTPIEAGWCMC 403
Query: 517 GEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVI 576
GE+GL GE+R VSR+E+R++ KLG+ I+PK L G ++ + ++E +
Sbjct: 404 GEVGLSGEVRPVSRIEQRIAEAEKLGFSHIIIPKYNMSGLT--GKYAIQLHPVRKVEEAL 461
Query: 577 NVVF 580
++F
Sbjct: 462 RILF 465
>gi|449877557|ref|ZP_21783283.1| DNA repair protein RadA [Streptococcus mutans S1B]
gi|449947174|ref|ZP_21807250.1| DNA repair protein RadA [Streptococcus mutans 11SSST2]
gi|450122277|ref|ZP_21866694.1| DNA repair protein RadA [Streptococcus mutans ST6]
gi|450155752|ref|ZP_21878459.1| DNA repair protein RadA [Streptococcus mutans 21]
gi|450161123|ref|ZP_21880389.1| DNA repair protein RadA [Streptococcus mutans 66-2A]
gi|449168976|gb|EMB71769.1| DNA repair protein RadA [Streptococcus mutans 11SSST2]
gi|449228117|gb|EMC27501.1| DNA repair protein RadA [Streptococcus mutans ST6]
gi|449236814|gb|EMC35714.1| DNA repair protein RadA [Streptococcus mutans 21]
gi|449239208|gb|EMC37937.1| DNA repair protein RadA [Streptococcus mutans 66-2A]
gi|449250794|gb|EMC48840.1| DNA repair protein RadA [Streptococcus mutans S1B]
Length = 466
Score = 345 bits (884), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 201/471 (42%), Positives = 283/471 (60%), Gaps = 26/471 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T +VC +CGY ++ G C C S + E E V+ + E+ +PV+L
Sbjct: 18 KTTFVCQECGYNSPKYLGRCPNCSSWSSFV-----EEIEVAEVKNARVSLTGEKTRPVKL 72
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
+V R+ + E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ +A
Sbjct: 73 NQVTSSQAT---RVKTNM---EEFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLA 126
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+ V YVSGEES EQI R++R+ E +LY+ T+++ I +++ + P L
Sbjct: 127 N------KGTVFYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQSIRAEIEKIQPDFL 180
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQTV ++ G + QV+E T+ L++ AK NI + GHVTK G +AGPR+LE
Sbjct: 181 IIDSIQTVMSPEISSVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTLAGPRMLE 240
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS++FL E+
Sbjct: 241 HMVDTVLYFEGERQHTFRILRAVKNRFGSTNEIGIFEMRSGGLVEVLNPSQVFLEERLDG 300
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
+ G A+ V M+G+R L E+QAL R G+ +R +I++VL K+ GL
Sbjct: 301 A---TGSAIVVTMEGTRPILAEVQALVTPTVFGNAKRTTTGLDFNRVSLIMAVLEKRCGL 357
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ +L GV L E A DLAVA AI SS+ E P +IGEIGL GE+R V+R
Sbjct: 358 LLQNQDAYLKSAGGVRLDEPAIDLAVAVAIASSYKEKPTNPQECYIGEIGLTGEIRRVNR 417
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQ-MEFIGCKNLKEVINVVF 580
+E+R++ +KLG+ K VPK+ SL+ L Q ++ IG + EV+ VF
Sbjct: 418 IEQRLNEASKLGFTKIFVPKN---SLSGLTIPQGIQVIGVTTVSEVLKKVF 465
>gi|392947828|ref|ZP_10313453.1| DNA repair protein RadA [Lactobacillus pentosus KCA1]
gi|392436986|gb|EIW14885.1| DNA repair protein RadA [Lactobacillus pentosus KCA1]
Length = 459
Score = 345 bits (884), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 190/477 (39%), Positives = 285/477 (59%), Gaps = 30/477 (6%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTM-KRYSAGESDEGPVVQRTWLPQKPEEVQPVR 171
+T +VCS+CGY+ ++ G C C T+ + + + D V KP+ ++ V
Sbjct: 5 KTQFVCSNCGYSTPRYLGRCPNCGEWNTLTEEHFDTKPDRKSRVSFAGKSAKPQRLKEVS 64
Query: 172 LLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAII 231
L + + +L E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ +
Sbjct: 65 LTKTPRVKTKL-----------KEFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSGQL 113
Query: 232 ADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRA 291
A+ V+YV+GEES Q+ RADR+ +++E+ FLY TD+ +I ++ P
Sbjct: 114 AETG-----GSVLYVTGEESAAQVKMRADRLAVSSEDFFLYPETDMSNIRSTIEETHPEF 168
Query: 292 LIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVL 351
++IDS+QT+ + + G + Q++E T+ LL+ +K I + + GHVTK G IAGP++L
Sbjct: 169 VVIDSVQTMQEPDMDSAIGSVSQIREITAELLQISKTNGITIFIVGHVTKGGAIAGPKIL 228
Query: 352 EHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHS 411
EH+VD VLY EG+ +YR+LR+VKNRFGST+ELG+FEM GL V+NPS+IFL E+
Sbjct: 229 EHMVDTVLYFEGDLHHTYRILRAVKNRFGSTNELGIFEMRTGGLYEVANPSEIFLEERLK 288
Query: 412 DSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAG 469
D+ G A+ V M+G+R L+E+QAL R +G+ +R +I++VL K+A
Sbjct: 289 DA---TGSAIVVSMEGTRPILVEVQALVTPTVFGNAKRTASGLDHNRVSLIMAVLEKRAS 345
Query: 470 LKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVS 529
L LQ +L GV L E A DLA+A ++ SS+ + F+GE+GL GE+R V+
Sbjct: 346 LMLQNQDAYLKAAGGVKLDEPAIDLAIAVSVASSYRDQQTRPSDCFVGEVGLTGEIRRVN 405
Query: 530 RMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFE---QMEFIGCKNLKEVINVVFTTP 583
R+E RV AKLG+++ +PK+ + G++ +E IG LKE + + P
Sbjct: 406 RIESRVGEAAKLGFKRIFIPKNNLQ-----GWDIPTGIEVIGVSTLKEALQLALQQP 457
>gi|449887793|ref|ZP_21787045.1| DNA repair protein RadA [Streptococcus mutans SA41]
gi|449252181|gb|EMC50168.1| DNA repair protein RadA [Streptococcus mutans SA41]
Length = 466
Score = 345 bits (884), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 201/471 (42%), Positives = 283/471 (60%), Gaps = 26/471 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T +VC +CGY ++ G C C S + E E V+ + E+ +PV+L
Sbjct: 18 KTTFVCQECGYNSPKYLGRCPNCSSWSSFV-----EEIEVAEVKNARVSLTGEKTRPVKL 72
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
+V R+ + E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ +A
Sbjct: 73 NQVTSSQAT---RVKTNM---EEFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLA 126
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+ V YVSGEES EQI R++R+ E +LY+ T+++ I +++ + P L
Sbjct: 127 N------KGTVFYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQSIRAEIEKIQPDFL 180
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQTV ++ G + QV+E T+ L++ AK NI + GHVTK G +AGPR+LE
Sbjct: 181 IIDSIQTVMSPEISSVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTLAGPRMLE 240
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS++FL E+
Sbjct: 241 HMVDTVLYFEGERQHTFRILRAVKNRFGSTNEIGIFEMRSGGLVEVLNPSQVFLEERLDG 300
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
+ G A+ V M+G+R L E+QAL R G+ +R +I++VL K+ GL
Sbjct: 301 A---TGSAIVVTMEGTRPILAEVQALVTPTVFGNAKRTTTGLDFNRVSLIMAVLEKRCGL 357
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ +L GV L E A DLAVA AI SS+ E P +IGEIGL GE+R V+R
Sbjct: 358 LLQNQDAYLKSAGGVRLDEPAIDLAVAVAIASSYKEKPTNPQECYIGEIGLTGEIRRVNR 417
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQ-MEFIGCKNLKEVINVVF 580
+E+R++ +KLG+ K VPK+ SL+ L Q ++ IG + EV+ VF
Sbjct: 418 IEQRLNEASKLGFTKIFVPKN---SLSGLTIPQGVQVIGVTTVSEVLKKVF 465
>gi|358463930|ref|ZP_09173904.1| DNA repair protein RadA [Streptococcus sp. oral taxon 058 str.
F0407]
gi|357067624|gb|EHI77726.1| DNA repair protein RadA [Streptococcus sp. oral taxon 058 str.
F0407]
Length = 445
Score = 345 bits (884), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 192/466 (41%), Positives = 281/466 (60%), Gaps = 24/466 (5%)
Query: 117 VCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRLLEVN 176
+C +C Y ++ G C C + + + V T KP ++ V + VN
Sbjct: 1 MCQNCEYNSPKYLGRCPNCGAWSSFVEEVEVAEVKNARVSLTGEKTKPMKLAEVTSINVN 60
Query: 177 KGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHD 236
+ +++ E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ ++ V
Sbjct: 61 RTKTEME-----------EFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSQV-- 107
Query: 237 LGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIIDS 296
V+YVSGEES +QI RA+R+ E +LY+ T+++ + +V + P LIIDS
Sbjct: 108 ----GTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSVRSEVGRIQPDFLIIDS 163
Query: 297 IQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVD 356
IQT+ ++G G + QV+E T+ L++ AK NI + + GHVTK G +AGPR+LEH+VD
Sbjct: 164 IQTIMSPEISGVQGSVSQVREVTAELMQLAKTNNIAIFIVGHVTKEGTLAGPRMLEHMVD 223
Query: 357 AVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFL 416
VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS++FL E+ +
Sbjct: 224 TVLYFEGERHHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGA--- 280
Query: 417 AGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGLKLQE 474
G ++ V M+G+R L E+QAL R G+ +RA +I++VL K+AGL LQ
Sbjct: 281 TGSSIVVTMEGTRPILAEVQALVTPTMFGNAKRTTTGLDFNRASLIMAVLEKRAGLLLQN 340
Query: 475 NAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKR 534
+L GV L E A DLAVA AI SS+ + P F+GE+GL GE+R V+R+E+R
Sbjct: 341 QDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKPTNPQECFVGELGLTGEIRRVNRIEQR 400
Query: 535 VSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
++ AKLG+ K VPK++ L ++++ IG ++EV+ VF
Sbjct: 401 INEAAKLGFTKIYVPKNSLTGLKPP--QEIQVIGVTTIQEVLKKVF 444
>gi|336402758|ref|ZP_08583486.1| DNA repair protein RadA [Bacteroides sp. 1_1_30]
gi|335947726|gb|EGN09509.1| DNA repair protein RadA [Bacteroides sp. 1_1_30]
Length = 455
Score = 345 bits (884), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 187/470 (39%), Positives = 286/470 (60%), Gaps = 22/470 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T +VCS+CG +W G C +C G Y + P +R + ++ +P+ L
Sbjct: 5 KTVYVCSNCGQDSPKWVGKCPSC---GEWNTYVEEIVRKEPTNRRPVSGIETQKPKPLAL 61
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
++ + P + +E+ RVLGGGLVPGSLVLIGG+PG+GKSTL++Q +
Sbjct: 62 SDIEADDE------PRINMHDDELNRVLGGGLVPGSLVLIGGEPGIGKSTLVMQTVLHMP 115
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+ ++YVSGEES Q+ RADR+ + + + T +E I ++ +P +
Sbjct: 116 E-------KKILYVSGEESARQLKLRADRLSDTSSDCLIVCETSLEQIYVHIKNTNPDLV 168
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQT+ + S G + QV+EC++++LRFAK+T+ PVLL GH+ K G IAGP+VLE
Sbjct: 169 IIDSIQTISTESIESSPGSIAQVRECSASILRFAKETHTPVLLIGHINKEGSIAGPKVLE 228
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
HIVD VL EG++ YR+LRS+KNRFGST ELG++EM Q GL+ V+NPS++ LS+ H
Sbjct: 229 HIVDTVLQFEGDQHYMYRILRSIKNRFGSTAELGIYEMRQDGLRQVNNPSELLLSQDH-- 286
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
E ++G+A+A ++G R FLIE QAL S R G R +M+++VL K+ G
Sbjct: 287 -EGMSGVAIASAIEGIRPFLIETQALVSSAVYGNPQRSATGFDLRRMNMLLAVLEKRVGF 345
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
KL + +FLN+ G+ + + A DL V +AI SS ++ I + GEIGL GE+R V+R
Sbjct: 346 KLAQKDVFLNIAGGLKVNDPAIDLPVISAILSSNMDAAIEPEVCMAGEIGLSGEIRPVNR 405
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+E+R+S KLG+++ ++PK + + T ++E + + ++E +F
Sbjct: 406 IEQRISEAEKLGFKRFLLPKYNLQGIDTKKL-KIELVPVRKVEEAFRALF 454
>gi|449981478|ref|ZP_21817816.1| DNA repair protein RadA [Streptococcus mutans 5SM3]
gi|449175769|gb|EMB78157.1| DNA repair protein RadA [Streptococcus mutans 5SM3]
Length = 466
Score = 345 bits (884), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 201/471 (42%), Positives = 283/471 (60%), Gaps = 26/471 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T +VC +CGY ++ G C C S + E E V+ + E+ +PV+L
Sbjct: 18 KTTFVCQECGYNSPKYLGRCPNCSSWSSFV-----EGVEVAEVKNARVSLTGEKTRPVKL 72
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
+V R+ + E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ +A
Sbjct: 73 NQVTSSQAT---RVKTNM---EEFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLA 126
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+ V YVSGEES EQI R++R+ E +LY+ T+++ I +++ + P L
Sbjct: 127 N------KGTVFYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQSIRAEIEKIQPDFL 180
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQTV ++ G + QV+E T+ L++ AK NI + GHVTK G +AGPR+LE
Sbjct: 181 IIDSIQTVMSPEISSVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTLAGPRMLE 240
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS++FL E+
Sbjct: 241 HMVDTVLYFEGERQHTFRILRAVKNRFGSTNEIGIFEMRSGGLVEVLNPSQVFLEERLDG 300
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
+ G A+ V M+G+R L E+QAL R G+ +R +I++VL K+ GL
Sbjct: 301 A---TGSAIVVTMEGTRPILAEVQALVTPTVFGNAKRTTTGLDFNRVSLIMAVLEKRCGL 357
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ +L GV L E A DLAVA AI SS+ E P +IGEIGL GE+R V+R
Sbjct: 358 LLQNQDAYLKSAGGVRLDEPAIDLAVAVAIASSYKEKPTNPQECYIGEIGLTGEIRRVNR 417
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQ-MEFIGCKNLKEVINVVF 580
+E+R++ +KLG+ K VPK+ SL+ L Q ++ IG + EV+ VF
Sbjct: 418 IEQRLNEASKLGFTKIFVPKN---SLSGLTIPQGIQVIGVTTVSEVLKKVF 465
>gi|450000802|ref|ZP_21825381.1| DNA repair protein RadA [Streptococcus mutans N29]
gi|449185344|gb|EMB87232.1| DNA repair protein RadA [Streptococcus mutans N29]
Length = 466
Score = 345 bits (884), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 201/471 (42%), Positives = 281/471 (59%), Gaps = 26/471 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T +VC +CGY ++ G C C S + E E V+ + E+ +PV+L
Sbjct: 18 KTTFVCQECGYNSPKYLGRCPNCSSWSSFV-----EEIEVAEVKNARVSLTGEKTRPVKL 72
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
+V R E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ +A
Sbjct: 73 NQVTSS------RATRVKTNMEEFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLA 126
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+ V YVSGEES EQI R++R+ E +LY+ T+++ I +++ + P L
Sbjct: 127 N------KGTVFYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQSIRAEIEKIQPDFL 180
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQTV ++ G + QV+E T+ L++ AK NI + GHVTK G +AGPR+LE
Sbjct: 181 IIDSIQTVMSPEISSVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTLAGPRMLE 240
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS++FL E+
Sbjct: 241 HMVDTVLYFEGERQHTFRILRAVKNRFGSTNEIGIFEMRSGGLVEVLNPSQVFLEERLDG 300
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
+ G A+ V M+G+R L E+QAL R G+ +R +I++VL K+ GL
Sbjct: 301 A---TGSAIVVTMEGTRPILAEVQALVTPTVFGNAKRTTTGLDFNRVSLIMAVLEKRCGL 357
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ +L GV L E A DLAVA AI SS+ E P +IGEIGL GE+R V+R
Sbjct: 358 LLQNQDAYLKSAGGVRLDEPAIDLAVAVAIASSYKEKPTNPQECYIGEIGLTGEIRRVNR 417
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQ-MEFIGCKNLKEVINVVF 580
+E+R++ +KLG+ K VPK+ SL+ L Q ++ IG + EV+ VF
Sbjct: 418 IEQRLNEASKLGFTKIFVPKN---SLSGLTIPQGIQVIGVTTVSEVLKKVF 465
>gi|449926157|ref|ZP_21800629.1| DNA repair protein RadA [Streptococcus mutans 4SM1]
gi|449160934|gb|EMB64164.1| DNA repair protein RadA [Streptococcus mutans 4SM1]
Length = 466
Score = 345 bits (884), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 201/471 (42%), Positives = 283/471 (60%), Gaps = 26/471 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T +VC +CGY ++ G C C S + E E V+ + E+ +PV+L
Sbjct: 18 KTTFVCQECGYNSPKYLGRCPNCSSWSSFV-----EEIEVAEVKNARVSLTGEKTRPVKL 72
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
+V R+ + E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ +A
Sbjct: 73 NQVTSSQAT---RVKTNM---EEFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLA 126
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+ V YVSGEES EQI R++R+ E +LY+ T+++ I +++ + P L
Sbjct: 127 N------KGTVFYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQSIRAEIEKIQPDFL 180
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQTV ++ G + QV+E T+ L++ AK NI + GHVTK G +AGPR+LE
Sbjct: 181 IIDSIQTVMSPEISSVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTLAGPRMLE 240
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS++FL E+
Sbjct: 241 HMVDTVLYFEGERQHTFRILRAVKNRFGSTNEIGIFEMRSGGLVEVLNPSQVFLEERLDG 300
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
+ G A+ V M+G+R L E+QAL R G+ +R +I++VL K+ GL
Sbjct: 301 A---TGSAIVVTMEGTRPILAEVQALVTPTVFGNAKRTTTGLDFNRVSLIMAVLEKRCGL 357
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ +L GV L E A DLAVA AI SS+ E P +IGEIGL GE+R V+R
Sbjct: 358 LLQNQDAYLKSAGGVRLDEPAIDLAVAVAIASSYKERPTNPQECYIGEIGLTGEIRRVNR 417
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQ-MEFIGCKNLKEVINVVF 580
+E+R++ +KLG+ K VPK+ SL+ L Q ++ IG + EV+ VF
Sbjct: 418 IEQRLNEASKLGFTKIFVPKN---SLSGLTIPQGIQVIGVTTVSEVLKKVF 465
>gi|339448575|ref|ZP_08652131.1| DNA repair protein RadA [Lactobacillus fructivorans KCTC 3543]
Length = 460
Score = 345 bits (884), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 193/447 (43%), Positives = 274/447 (61%), Gaps = 30/447 (6%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T +VCS+CGY ++ G C C TM V++T P++ R+
Sbjct: 5 KTQYVCSNCGYISPRYMGRCPNCGEWNTM-------------VEQTVQKTDPKKANVSRV 51
Query: 173 -LEVNKGMKQLDWRI-----PLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQ 226
L NK QL ++ P + NE+ RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ
Sbjct: 52 SLSGNKSRPQLIGQVNAESAPRVQVDSNELNRVLGGGIVPGSLVLIGGDPGIGKSTLLLQ 111
Query: 227 MAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATE-ELFLYSSTDIEDIVEKVQ 285
++ +A+ V+YVSGEES +QI RADR+ ++ L++Y TD+ I + ++
Sbjct: 112 VSGQLAE-----SGQRVLYVSGEESADQIKMRADRLNVSENGNLYIYPETDMASIRKAIE 166
Query: 286 PLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDI 345
+ P +IIDS+QT+ + + G + QV+ TS L+ AK I + L GHVTK G +
Sbjct: 167 EVKPDTVIIDSVQTMQEDEIPSAIGSVTQVRGVTSDLMNIAKTNGITIFLVGHVTKGGTL 226
Query: 346 AGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIF 405
AGP+ LEH+VD VLY EG+K SYRLLR+VKNRFGST+ELG+F+M + GL+ V NPS+IF
Sbjct: 227 AGPKTLEHMVDTVLYFEGDKHHSYRLLRAVKNRFGSTNELGIFQMDEDGLKEVKNPSEIF 286
Query: 406 LSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISV 463
L E+ ++ G A+ V M+G+R L+E+QAL V R +G+ +R +I++V
Sbjct: 287 LEERLKNA---TGSAIVVAMEGTRPILVELQALIVPSVFGNAQRTASGLDRNRVSLIMAV 343
Query: 464 LMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGG 523
L K+AGL LQ +L GV L E A DLA+A +I SS+ +IGE+GL G
Sbjct: 344 LEKRAGLMLQNQDAYLKAAGGVKLNEPAIDLAMAISIASSYENVGTDPKECYIGELGLTG 403
Query: 524 ELRMVSRMEKRVSTVAKLGYRKCIVPK 550
E+R V+R+E+RV KLG+++ +VPK
Sbjct: 404 EIRRVNRIEQRVIEAQKLGFKRVLVPK 430
>gi|295136344|ref|YP_003587020.1| DNA repair protein RadA [Zunongwangia profunda SM-A87]
gi|294984359|gb|ADF54824.1| DNA repair protein RadA [Zunongwangia profunda SM-A87]
Length = 456
Score = 345 bits (884), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 190/474 (40%), Positives = 289/474 (60%), Gaps = 31/474 (6%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQ---- 168
+T + C +CG +W G C +C T+ E E PV ++ W E +
Sbjct: 7 KTAYYCQNCGAQYSKWQGRCNSCGDWNTI----VEEIVEKPV-KKDWTSSAKTEAKRAAK 61
Query: 169 PVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMA 228
P+RL E+ Q W+ NE+ RVLGGGLVPGSL L+GG+PG+GKSTLLLQ++
Sbjct: 62 PLRLNEIETA-PQYRWKTG-----NNELDRVLGGGLVPGSLTLLGGEPGIGKSTLLLQIS 115
Query: 229 AIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLS 288
L P V+YVSGEES +QI RA+R+ + ++ + T ++I +++ +S
Sbjct: 116 --------LSFPYKVLYVSGEESQQQIKMRAERIDPNSTNCYILTETKTQNIFRQIEEVS 167
Query: 289 PRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGP 348
P +IIDSIQT++ + + G + Q++E TS L++FAK++N+PV+L GH+TK G IAGP
Sbjct: 168 PEVVIIDSIQTLHSDYIESAPGSISQIRETTSELIKFAKESNVPVILIGHITKEGSIAGP 227
Query: 349 RVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSE 408
+VLEH+VD VL EG++ YR+LRS KNRFGST ELG++EM GL+ V+NPS+I +S+
Sbjct: 228 KVLEHMVDTVLQFEGDRNHVYRILRSHKNRFGSTHELGIYEMQGSGLREVNNPSEILISK 287
Query: 409 QHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMK 466
D L+G A+A ++G R +IEIQAL + T R G A R +M+++VL K
Sbjct: 288 NDED---LSGTAIASTLEGMRPLMIEIQALVSTAVYGTPQRSTTGYNAKRLNMLLAVLEK 344
Query: 467 QAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELR 526
+AG KL +FLN+ G+++ + A DLAV AAI SS + I F E+GL GE+R
Sbjct: 345 RAGFKLGAKDVFLNITGGISVDDPAIDLAVVAAILSSNEDISIEKDSCFAAEVGLAGEIR 404
Query: 527 MVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
V+R+++R+ KLG+ + ++ K ++ A+ ++ I +++V++ +F
Sbjct: 405 PVTRVDQRILEAEKLGFARIMISKQSKLPKASYN---IQVIKVSKIEDVVSQLF 455
>gi|317505474|ref|ZP_07963392.1| DNA repair protein RadA [Prevotella salivae DSM 15606]
gi|315663387|gb|EFV03136.1| DNA repair protein RadA [Prevotella salivae DSM 15606]
Length = 460
Score = 345 bits (884), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 191/475 (40%), Positives = 287/475 (60%), Gaps = 25/475 (5%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEV---- 167
++ +VCS+CG +W G C C T K +D G + +T +
Sbjct: 4 DKIAYVCSNCGQESTKWIGKCPNCGQWNTFKEIRIA-NDTGTMAAKTAAHAVRHALTGKN 62
Query: 168 QPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQM 227
+P+ L E++ Q + RI + E+ RVLGGGLVPGS+VL+GG+PG+GKSTL LQ
Sbjct: 63 KPLHLREISA---QDEPRIDM---HDAELNRVLGGGLVPGSIVLLGGEPGIGKSTLTLQT 116
Query: 228 AAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPL 287
+ D V+YVSGEES QI RA+R+ E+ + T +EDI + ++ +
Sbjct: 117 ILHMDD-------RRVLYVSGEESTHQIKMRAERIG-GNSEVMILCETSLEDIFDNIKEV 168
Query: 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAG 347
P ++IDSIQT+ V S G + QV+EC +ALLRFAK + IPV+L GH+ K G +AG
Sbjct: 169 KPELVVIDSIQTISTSDVESSPGSITQVRECAAALLRFAKTSGIPVILIGHINKEGTLAG 228
Query: 348 PRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLS 407
P++LEHIVD V+ EG++ YR+LRS+KNRFGST ELG++EM Q GL+ VSNPS++ LS
Sbjct: 229 PKLLEHIVDTVIQFEGDQHYMYRILRSIKNRFGSTSELGIYEMQQNGLRQVSNPSELLLS 288
Query: 408 EQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLM 465
+ H E L+G+A++ +++G R FL+E QAL S + T R G R +M+++VL
Sbjct: 289 QDH---EGLSGVAISSVIEGVRPFLVETQALVSSAAYGTPQRSATGFDQRRLNMLLAVLE 345
Query: 466 KQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGEL 525
K+ G KL + +F+N+ G+ +T+ A DL+V AA+ SS ++ I G GE+GL GE+
Sbjct: 346 KRVGFKLMQKDVFINIAGGLRVTDLAMDLSVIAAVLSSNVDTAIEAGWCMAGEVGLSGEV 405
Query: 526 RMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
R V+R+E+R++ KLG+ I+P K + ++E + ++E + +F
Sbjct: 406 RPVNRIEQRIAEAEKLGFEHIIIPAHNLKGFDKRKY-KIELHPVRKVEEALRTLF 459
>gi|255038517|ref|YP_003089138.1| DNA repair protein RadA [Dyadobacter fermentans DSM 18053]
gi|254951273|gb|ACT95973.1| DNA repair protein RadA [Dyadobacter fermentans DSM 18053]
Length = 457
Score = 345 bits (884), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 189/474 (39%), Positives = 288/474 (60%), Gaps = 30/474 (6%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTW----LPQKPEEVQ 168
+T + C +CGY +W G C +C T + + D+ V +W L KP +
Sbjct: 5 KTAYFCQECGYNSPKWVGRCPSCGEWNTFVQEVIEKDDKKTAV--SWKSVNLANKPRSI- 61
Query: 169 PVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMA 228
++ N+ P F E+ RVLGGG+VPGSLVLIGG+PG+GKSTL+LQ+A
Sbjct: 62 -AEIVYENE---------PRIRTFDEELNRVLGGGIVPGSLVLIGGEPGIGKSTLMLQIA 111
Query: 229 AIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLS 288
+++ V+YVSGEES QI RA+RM ++ F+ + T ++I +++
Sbjct: 112 LTLSNKR-------VLYVSGEESEAQIKMRAERMAAKSDNCFILTDTQTQNIFRQIEDFQ 164
Query: 289 PRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGP 348
P LI+DSIQT+ + AG + QV+ECT+ +++AK+ +PV L GH+TK G +AGP
Sbjct: 165 PEILIVDSIQTMQSTYIESGAGSVSQVRECTAEFMKYAKEMGVPVFLIGHITKDGSLAGP 224
Query: 349 RVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSE 408
+VLEH+VD VL EG++ ++YR+LR++KNRFGST ELG++EM GL+ VSNPS+I +S+
Sbjct: 225 KVLEHMVDTVLQFEGDRHNTYRILRTMKNRFGSTSELGIYEMQGNGLRQVSNPSEILISQ 284
Query: 409 QHSDSEFLAGLAVAVIMDGSRSFLIEIQAL--CVSGSTVSRHVNGIQASRADMIISVLMK 466
+ E ++G+A+ +M+G+R L+EIQ+L + T R G A R M+++VL K
Sbjct: 285 R---DEPVSGIAIGSMMEGNRPLLVEIQSLVSVATYGTPQRSSTGFDAKRLQMLLAVLEK 341
Query: 467 QAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELR 526
+ G +L +FLNV G+ + + A DLAV A++ SS+ + IP + F E+GLGGE+R
Sbjct: 342 RGGFRLGVQDVFLNVAGGLKVEDPAIDLAVIASLVSSYEDKFIPPSVCFAAEVGLGGEVR 401
Query: 527 MVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
V+R++ RVS KLG++K + K K L L ++E I +L E+ +F
Sbjct: 402 AVNRIDSRVSEAEKLGFKKIYISKYNSKGL-DLKRGKIEVIPVAHLDELFMSLF 454
>gi|357043021|ref|ZP_09104720.1| DNA repair protein RadA [Prevotella histicola F0411]
gi|355368617|gb|EHG16030.1| DNA repair protein RadA [Prevotella histicola F0411]
Length = 466
Score = 344 bits (883), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 192/452 (42%), Positives = 271/452 (59%), Gaps = 31/452 (6%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQR---TWLPQKPE--- 165
++ +VCS+CG +W G C C T K D G R T L
Sbjct: 4 DKIAYVCSNCGQESTKWIGKCPNCGQWNTFKEIRIA-GDTGSQAARNAATTLRNAASGSS 62
Query: 166 ----EVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKS 221
+P RL +++ + P + E+ RVLGGGLVPGS+VL+GG+PG+GKS
Sbjct: 63 VSALNNKPQRLRDISSHDE------PRIDMHDGELNRVLGGGLVPGSIVLLGGEPGIGKS 116
Query: 222 TLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMI-ATEELFLYSSTDIEDI 280
TL LQ L V+YVSGEES QI RA+R+ E + + S T +E I
Sbjct: 117 TLTLQTI--------LHMTQKVLYVSGEESPHQIKMRAERITKDIAENIVILSETSLEHI 168
Query: 281 VEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVT 340
E ++ + P +++DSIQT+ V S G + QV+EC SALLRFAK + +PV+L GH+
Sbjct: 169 FEHIRDVQPDLVVVDSIQTISTEDVDSSPGSISQVRECASALLRFAKTSGVPVILIGHIN 228
Query: 341 KSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSN 400
K G IAGP++LEHIVD V+ EG++ YR+LRS+KNRFGST ELG++EM Q GL+ VSN
Sbjct: 229 KEGSIAGPKILEHIVDTVIQFEGDQHYMYRILRSIKNRFGSTSELGIYEMEQQGLRQVSN 288
Query: 401 PSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRAD 458
PS++ L+E H E L+G+A++ ++G R FL+E QAL S + T R G R +
Sbjct: 289 PSELLLTEDH---EGLSGVAISSTIEGVRPFLVETQALVSSAAYGTPQRSATGFDQRRLN 345
Query: 459 MIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGE 518
M+++VL K+ G KL + +FLN+ G+ +T+ A DL+V AA+ SS ++ PI G GE
Sbjct: 346 MLLAVLEKRVGFKLMQKDVFLNIAGGLRVTDMAMDLSVIAAVLSSNVDTPIEQGWCMCGE 405
Query: 519 IGLGGELRMVSRMEKRVSTVAKLGYRKCIVPK 550
+GL GE+R VSR+E+R++ KLG+ I+PK
Sbjct: 406 VGLSGEVRPVSRIEQRIAEAEKLGFSHIIIPK 437
>gi|53711896|ref|YP_097888.1| DNA repair protein RadA [Bacteroides fragilis YCH46]
gi|60680124|ref|YP_210268.1| DNA repair protein RadA [Bacteroides fragilis NCTC 9343]
gi|265765262|ref|ZP_06093537.1| DNA repair protein RadA [Bacteroides sp. 2_1_16]
gi|336408134|ref|ZP_08588628.1| DNA repair protein RadA [Bacteroides sp. 2_1_56FAA]
gi|375356970|ref|YP_005109742.1| putative DNA repair protein [Bacteroides fragilis 638R]
gi|423248525|ref|ZP_17229541.1| DNA repair protein RadA [Bacteroides fragilis CL03T00C08]
gi|423253473|ref|ZP_17234404.1| DNA repair protein RadA [Bacteroides fragilis CL03T12C07]
gi|423259090|ref|ZP_17240013.1| DNA repair protein RadA [Bacteroides fragilis CL07T00C01]
gi|423263939|ref|ZP_17242942.1| DNA repair protein RadA [Bacteroides fragilis CL07T12C05]
gi|423269482|ref|ZP_17248454.1| DNA repair protein RadA [Bacteroides fragilis CL05T00C42]
gi|423272959|ref|ZP_17251906.1| DNA repair protein RadA [Bacteroides fragilis CL05T12C13]
gi|423282155|ref|ZP_17261040.1| DNA repair protein RadA [Bacteroides fragilis HMW 615]
gi|52214761|dbj|BAD47354.1| putative DNA repair protein [Bacteroides fragilis YCH46]
gi|60491558|emb|CAH06310.1| putative DNA repair protein [Bacteroides fragilis NCTC 9343]
gi|263254646|gb|EEZ26080.1| DNA repair protein RadA [Bacteroides sp. 2_1_16]
gi|301161651|emb|CBW21191.1| putative DNA repair protein [Bacteroides fragilis 638R]
gi|335939434|gb|EGN01308.1| DNA repair protein RadA [Bacteroides sp. 2_1_56FAA]
gi|387776670|gb|EIK38770.1| DNA repair protein RadA [Bacteroides fragilis CL07T00C01]
gi|392657373|gb|EIY51010.1| DNA repair protein RadA [Bacteroides fragilis CL03T12C07]
gi|392659738|gb|EIY53356.1| DNA repair protein RadA [Bacteroides fragilis CL03T00C08]
gi|392700328|gb|EIY93490.1| DNA repair protein RadA [Bacteroides fragilis CL05T00C42]
gi|392706205|gb|EIY99328.1| DNA repair protein RadA [Bacteroides fragilis CL07T12C05]
gi|392708523|gb|EIZ01630.1| DNA repair protein RadA [Bacteroides fragilis CL05T12C13]
gi|404581723|gb|EKA86418.1| DNA repair protein RadA [Bacteroides fragilis HMW 615]
Length = 455
Score = 344 bits (883), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 191/476 (40%), Positives = 285/476 (59%), Gaps = 34/476 (7%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKP------EE 166
+T +VCS+CG +W G C +C G Y +V++ ++P +
Sbjct: 5 KTVYVCSNCGQESPKWVGKCPSC---GEWNTYVE------EIVRKEVPNKRPVSGIESPK 55
Query: 167 VQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQ 226
+PV L E+ + P + E+ RVLGGGLVPGSLVLIGG+PG+GKSTL+LQ
Sbjct: 56 AKPVTLSEIEADEE------PRIDMHDEELNRVLGGGLVPGSLVLIGGEPGIGKSTLVLQ 109
Query: 227 MAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQP 286
+ + ++Y+SGEES Q+ RADR+ + + + T +E I ++
Sbjct: 110 TVLHMPERR-------ILYISGEESARQLKLRADRLTRTSSDCLIVCETSLEQIYVHIKN 162
Query: 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIA 346
P +IIDSIQT+ + S G + QV+EC++++LRFAK+T+ PVLL GH+ K G IA
Sbjct: 163 TRPDLVIIDSIQTISTESIESSPGSIAQVRECSASILRFAKETHTPVLLIGHINKEGSIA 222
Query: 347 GPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFL 406
GP+VLEHIVD VL EG++ YR+LRS+KNRFGST ELG++EM Q GL+ VSNPS++ L
Sbjct: 223 GPKVLEHIVDTVLQFEGDQHYMYRILRSIKNRFGSTAELGIYEMRQDGLRQVSNPSELLL 282
Query: 407 SEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVL 464
S+ H E ++G+A+A ++G R FLIE QAL S R G R +M+++VL
Sbjct: 283 SQDH---EGMSGVAIASAIEGVRPFLIETQALVSSAVYGNPQRSATGFDIRRMNMLLAVL 339
Query: 465 MKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGE 524
K+ G KL + +FLN+ G+ + + A DLAV +AI SS ++ I + GEIGL GE
Sbjct: 340 EKRVGFKLAQKDVFLNIAGGLKVNDPAIDLAVISAILSSNMDAAIEPEVCMAGEIGLSGE 399
Query: 525 LRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+R V+R+E+R+ KLG+++ I+PK + + T ++E + + ++E +F
Sbjct: 400 IRPVNRIEQRIGEAEKLGFKRFILPKYNMQGIDTKKL-RIELVPVRKVEEAFRTLF 454
>gi|322376097|ref|ZP_08050607.1| DNA repair protein RadA [Streptococcus sp. C300]
gi|321279047|gb|EFX56090.1| DNA repair protein RadA [Streptococcus sp. C300]
Length = 445
Score = 344 bits (883), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 191/466 (40%), Positives = 281/466 (60%), Gaps = 24/466 (5%)
Query: 117 VCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRLLEVN 176
+C +C Y ++ G C C + + + V T KP ++ V + VN
Sbjct: 1 MCRNCEYNSPKYLGRCPNCGAWSSFVEEIEVVEVKNARVSLTGEKTKPMKLAEVTSINVN 60
Query: 177 KGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHD 236
+ +++ E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ ++ V
Sbjct: 61 RTKTEME-----------EFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSQV-- 107
Query: 237 LGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIIDS 296
V+YVSGEES +QI RA+R+ E +LY+ T+++ + +V+ + P LIIDS
Sbjct: 108 ----GTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSVRSEVERIQPDFLIIDS 163
Query: 297 IQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVD 356
IQT+ ++G G + QV+E T+ L++ AK NI + + GHVTK G +AGPR+LEH+VD
Sbjct: 164 IQTIMSPEISGVQGSVSQVREVTAELMQLAKTNNIAIFIVGHVTKEGTLAGPRMLEHMVD 223
Query: 357 AVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFL 416
VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS++FL E+ +
Sbjct: 224 TVLYFEGERHHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGA--- 280
Query: 417 AGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGLKLQE 474
G ++ V M+G+R L E+QAL R G+ +RA +I++VL K+AGL LQ
Sbjct: 281 TGSSIVVTMEGTRPILAEVQALVTPTMFGNAKRTTTGLDFNRASLIMAVLEKRAGLLLQN 340
Query: 475 NAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKR 534
+L GV L E A DLAVA AI SS+ + P F+GE+GL GE+R V+R+E+R
Sbjct: 341 QDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKPTNPQECFVGELGLTGEIRRVNRIEQR 400
Query: 535 VSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
++ KLG+ K VPK++ + +++E IG ++EV+ VF
Sbjct: 401 INEAEKLGFTKIYVPKNSLTGITPP--KEIEVIGVTTIQEVLKKVF 444
>gi|450070637|ref|ZP_21847694.1| DNA repair protein RadA [Streptococcus mutans M2A]
gi|449213738|gb|EMC14067.1| DNA repair protein RadA [Streptococcus mutans M2A]
Length = 466
Score = 344 bits (883), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 200/471 (42%), Positives = 283/471 (60%), Gaps = 26/471 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T +VC +CGY ++ G C C S + E E V+ + E+ +PV+L
Sbjct: 18 KTTFVCQECGYNSPKYLGRCPNCSSWSSFV-----EEIEVAEVKNARVSLTGEKTRPVKL 72
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
+V R+ + E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ +A
Sbjct: 73 NQVTSSQAT---RVKTNM---EEFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLA 126
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+ V Y+SGEES EQI R++R+ E +LY+ T+++ I +++ + P L
Sbjct: 127 N------KGTVFYISGEESAEQIKLRSERLGDIDNEFYLYAETNMQSIRAEIEKIQPDFL 180
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQTV ++ G + QV+E T+ L++ AK NI + GHVTK G +AGPR+LE
Sbjct: 181 IIDSIQTVMSPEISSVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTLAGPRMLE 240
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS++FL E+
Sbjct: 241 HMVDTVLYFEGERQHTFRILRAVKNRFGSTNEIGIFEMRSGGLVEVLNPSQVFLEERLDG 300
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
+ G A+ V M+G+R L E+QAL R G+ +R +I++VL K+ GL
Sbjct: 301 A---TGSAIVVTMEGTRPILAEVQALVTPTVFGNAKRTTTGLDFNRVSLIMAVLEKRCGL 357
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ +L GV L E A DLAVA AI SS+ E P +IGEIGL GE+R V+R
Sbjct: 358 LLQNQDAYLKSAGGVRLDEPAIDLAVAVAIASSYKEKPTNPQECYIGEIGLTGEIRRVNR 417
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQ-MEFIGCKNLKEVINVVF 580
+E+R++ +KLG+ K VPK+ SL+ L Q ++ IG + EV+ VF
Sbjct: 418 IEQRLNEASKLGFTKIFVPKN---SLSGLTIPQGIQVIGVTTVSEVLKKVF 465
>gi|450133696|ref|ZP_21870749.1| DNA repair protein RadA [Streptococcus mutans NLML8]
gi|449150711|gb|EMB54468.1| DNA repair protein RadA [Streptococcus mutans NLML8]
Length = 466
Score = 344 bits (883), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 200/471 (42%), Positives = 283/471 (60%), Gaps = 26/471 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T +VC +CGY ++ G C C S + E E V+ + E+ +PV+L
Sbjct: 18 KTTFVCQECGYNSPKYLGRCPNCSSWSSFV-----EEIEVAEVKNARVSLTGEKTRPVKL 72
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
+V R+ + E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ +A
Sbjct: 73 NQVTSSQAT---RVKTNM---EEFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLA 126
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+ V YVSGEES EQI R++R+ E +LY+ T+++ I +++ + P L
Sbjct: 127 N------KGTVFYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQSIRAEIEKIQPDFL 180
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQTV ++ G + QV+E T+ L++ AK NI + GHVTK G +AGPR+LE
Sbjct: 181 IIDSIQTVMSPEISSVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTLAGPRMLE 240
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS++FL E+
Sbjct: 241 HMVDTVLYFEGERQHTFRILRAVKNRFGSTNEIGIFEMRSGGLVEVLNPSQVFLEERLDG 300
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
+ G A+ V M+G+R L E+QAL R G+ +R +I++VL K+ GL
Sbjct: 301 A---TGSAIVVTMEGTRPILAEVQALVTPTVFGNAKRTTTGLDFNRVSLIMAVLEKRCGL 357
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ +L GV L E A DLAVA AI SS+ E P +IGEIGL GE+R V+R
Sbjct: 358 LLQNQDAYLKSAGGVRLDEPAIDLAVAVAIASSYKEKPTNPQECYIGEIGLTGEIRRVNR 417
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQ-MEFIGCKNLKEVINVVF 580
+E+R++ +KLG+ K +PK+ SL+ L Q ++ IG + EV+ VF
Sbjct: 418 IEQRLNEASKLGFTKIFIPKN---SLSGLTIPQGIQVIGVTTVSEVLKKVF 465
>gi|387792638|ref|YP_006257703.1| DNA repair protein RadA [Solitalea canadensis DSM 3403]
gi|379655471|gb|AFD08527.1| DNA repair protein RadA [Solitalea canadensis DSM 3403]
Length = 489
Score = 344 bits (883), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 192/482 (39%), Positives = 291/482 (60%), Gaps = 39/482 (8%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTM------KRYSAGESDEGPVV----QRTWLPQ 162
+T + C CGY +W G C +C + T K ++ + + P QR+ Q
Sbjct: 32 KTTYFCQSCGYQSPKWLGKCPSCSAWNTFVEEIIEKPNASIPNWKAPTTTTSTQRS---Q 88
Query: 163 KPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKST 222
KP+E+ + E + + +E+ RVLGGG+VPGSLVLIGG+PG+GKST
Sbjct: 89 KPQEINSIAYNEQQRILTN-----------DSELNRVLGGGIVPGSLVLIGGEPGIGKST 137
Query: 223 LLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATE--ELFLYSSTDIEDI 280
L+LQ+A + + V+YVSGEES +QI RA+R+ + E F+ + T ++I
Sbjct: 138 LMLQLALNL-------KGHRVLYVSGEESDQQIKMRAERIEENSSKGECFILTETSTQNI 190
Query: 281 VEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVT 340
++++ L PR +IIDSIQT+Y + + G + QV+ECT+ LLRFAK+T PV L GH+T
Sbjct: 191 FKQIEELEPRIVIIDSIQTLYSAHIESTPGSVSQVRECTAELLRFAKETATPVFLIGHIT 250
Query: 341 KSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSN 400
K G IAGP++LEH+VD VL EG++ SYR+LR+VKNRFGS ELG++EM GL+ VSN
Sbjct: 251 KDGMIAGPKILEHMVDTVLQFEGDRHYSYRILRAVKNRFGSASELGIYEMQGSGLREVSN 310
Query: 401 PSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRAD 458
PS+I LS++ E L+G+ V+ ++G+R+ L+E QAL + T R G R +
Sbjct: 311 PSEILLSQR---DEPLSGVTVSATVEGARTMLVETQALVSHSAYGTPQRSATGYDTRRMN 367
Query: 459 MIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGE 518
M+++VL K+ G KL +F+N+ G+ + + A DL + AAI SS + P+ F E
Sbjct: 368 MLLAVLEKRGGFKLGVKDVFVNITGGIRIEDPAIDLGLVAAIISSNEDIPVSYKTCFAAE 427
Query: 519 IGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINV 578
+GL GE+R V+R+E+R++ KLG+ + + K +K+L F +E + ++EV N
Sbjct: 428 VGLSGEIRAVNRIEQRIAEAEKLGFEQIFISKYNQKALDLKRF-NIEIVSVGKIEEVFNY 486
Query: 579 VF 580
+F
Sbjct: 487 LF 488
>gi|24378825|ref|NP_720780.1| DNA repair protein RadA [Streptococcus mutans UA159]
gi|449864849|ref|ZP_21778664.1| DNA repair protein RadA [Streptococcus mutans U2B]
gi|24376700|gb|AAN58086.1|AE014880_13 putative DNA repair protein [Streptococcus mutans UA159]
gi|449264653|gb|EMC61990.1| DNA repair protein RadA [Streptococcus mutans U2B]
Length = 466
Score = 344 bits (883), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 200/471 (42%), Positives = 281/471 (59%), Gaps = 26/471 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T +VC +CGY ++ G C C S + + V T E+ +PV+L
Sbjct: 18 KTTFVCQECGYNSPKYLGRCPNCSSWSSFVEEVEVAEVKNARVSLTG-----EKTRPVKL 72
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
+V R+ + E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ +A
Sbjct: 73 NQVTSSQAT---RVKTNM---EEFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLA 126
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+ V YVSGEES EQI R++R+ E +LY+ T+++ I +++ + P L
Sbjct: 127 N------KGTVFYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQSIRAEIEKIQPDFL 180
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQTV ++ G + QV+E T+ L++ AK NI + GHVTK G +AGPR+LE
Sbjct: 181 IIDSIQTVMSPEISSVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTLAGPRMLE 240
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS++FL E+
Sbjct: 241 HMVDTVLYFEGERQHTFRILRAVKNRFGSTNEIGIFEMRSGGLVEVLNPSQVFLEERLDG 300
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
+ G A+ V M+G+R L E+QAL R G+ +R +I++VL K+ GL
Sbjct: 301 A---TGSAIVVTMEGTRPILAEVQALVTPTVFGNAKRTTTGLDFNRVSLIMAVLEKRCGL 357
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ +L GV L E A DLAVA AI SS+ E P +IGEIGL GE+R V+R
Sbjct: 358 LLQNQDAYLKSAGGVRLDEPAIDLAVAVAIASSYKEKPTTPQECYIGEIGLTGEIRRVNR 417
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQ-MEFIGCKNLKEVINVVF 580
+E+R++ +KLG+ K VPK+ SL+ L Q ++ IG + EV+ VF
Sbjct: 418 IEQRLNEASKLGFTKIFVPKN---SLSGLTIPQGIQVIGVTTVSEVLKKVF 465
>gi|419780068|ref|ZP_14305919.1| DNA repair protein RadA [Streptococcus oralis SK100]
gi|383185698|gb|EIC78193.1| DNA repair protein RadA [Streptococcus oralis SK100]
Length = 445
Score = 344 bits (883), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 191/466 (40%), Positives = 281/466 (60%), Gaps = 24/466 (5%)
Query: 117 VCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRLLEVN 176
+C +C Y ++ G C C + + + V T KP ++ V + VN
Sbjct: 1 MCRNCEYNSPKYLGRCPNCGAWSSFVEEIEVVEVKNARVSLTGEKTKPMKLAEVTSINVN 60
Query: 177 KGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHD 236
+ +++ E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ ++ V
Sbjct: 61 RTKTEME-----------EFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSQV-- 107
Query: 237 LGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIIDS 296
V+YVSGEES +QI RA+R+ E +LY+ T+++ + +V+ + P LIIDS
Sbjct: 108 ----GTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSVRSEVERIHPDFLIIDS 163
Query: 297 IQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVD 356
IQT+ ++G G + QV+E T+ L++ AK NI + + GHVTK G +AGPR+LEH+VD
Sbjct: 164 IQTIMSPEISGVQGSVSQVREVTAELMQLAKTNNIAIFIVGHVTKEGTLAGPRMLEHMVD 223
Query: 357 AVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFL 416
VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS++FL E+ +
Sbjct: 224 TVLYFEGERHHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGA--- 280
Query: 417 AGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGLKLQE 474
G ++ V M+G+R L E+QAL R G+ +RA +I++VL K+AGL LQ
Sbjct: 281 TGSSIVVTMEGTRPILAEVQALVTPTMFGNAKRTTTGLDFNRASLIMAVLEKRAGLLLQN 340
Query: 475 NAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKR 534
+L GV L E A DLAVA AI SS+ + P F+GE+GL GE+R V+R+E+R
Sbjct: 341 QDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKPTNPQECFVGELGLTGEIRRVNRIEQR 400
Query: 535 VSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
++ AKLG+ K VP ++ + +++E IG ++EV+ VF
Sbjct: 401 INEAAKLGFTKIYVPNNSLTGITPP--KEIEVIGVTTIQEVLKNVF 444
>gi|334881842|emb|CCB82752.1| DNA repair protein radA [Lactobacillus pentosus MP-10]
gi|339637569|emb|CCC16505.1| DNA repair protein radA [Lactobacillus pentosus IG1]
Length = 459
Score = 344 bits (883), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 190/477 (39%), Positives = 285/477 (59%), Gaps = 30/477 (6%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTM-KRYSAGESDEGPVVQRTWLPQKPEEVQPVR 171
+T +VCS+CGY+ ++ G C C T+ + + + D V KP+ ++ V
Sbjct: 5 KTQFVCSNCGYSTPRYLGRCPNCGEWNTLTEEHFDTKPDRKSRVSFAGKSAKPQRLKEVS 64
Query: 172 LLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAII 231
L + + +L E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ +
Sbjct: 65 LTKTPRVKTKL-----------KEFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSGQL 113
Query: 232 ADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRA 291
A+ V+YV+GEES Q+ RADR+ +++E+ FLY TD+ +I ++ P
Sbjct: 114 AETG-----GSVLYVTGEESAAQVKMRADRLAVSSEDFFLYPETDMSNIRSTIEETHPDF 168
Query: 292 LIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVL 351
++IDS+QT+ + + G + Q++E T+ LL+ +K I + + GHVTK G IAGP++L
Sbjct: 169 VVIDSVQTMQEPDMDSAIGSVSQIREITAELLQISKTNGITIFIVGHVTKGGAIAGPKIL 228
Query: 352 EHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHS 411
EH+VD VLY EG+ +YR+LR+VKNRFGST+ELG+FEM GL V+NPS+IFL E+
Sbjct: 229 EHMVDTVLYFEGDLHHTYRILRAVKNRFGSTNELGIFEMRTGGLYEVANPSEIFLEERLK 288
Query: 412 DSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAG 469
D+ G A+ V M+G+R L+E+QAL R +G+ +R +I++VL K+A
Sbjct: 289 DA---TGSAIVVSMEGTRPILVEVQALVTPTVFGNAKRTASGLDHNRVSLIMAVLEKRAS 345
Query: 470 LKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVS 529
L LQ +L GV L E A DLA+A ++ SS+ + F+GE+GL GE+R V+
Sbjct: 346 LMLQNQDAYLKAAGGVKLDEPAIDLAIAVSVASSYRDQQTRPSDCFVGEVGLTGEIRRVN 405
Query: 530 RMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFE---QMEFIGCKNLKEVINVVFTTP 583
R+E RV AKLG+++ +PK+ + G++ +E IG LKE + + P
Sbjct: 406 RIESRVGEAAKLGFKRIFIPKNNLQ-----GWDIPTGIEVIGVATLKEALQLALQQP 457
>gi|189461966|ref|ZP_03010751.1| hypothetical protein BACCOP_02633 [Bacteroides coprocola DSM 17136]
gi|189431360|gb|EDV00345.1| DNA repair protein RadA [Bacteroides coprocola DSM 17136]
Length = 457
Score = 344 bits (882), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 191/471 (40%), Positives = 285/471 (60%), Gaps = 22/471 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T +VC++CG +W G C +C T E PV + + +P RL
Sbjct: 5 KTVYVCTNCGQESPKWAGKCPSCGQWNTFVEEVV--RKEMPVAKHVAHGIESVRSKPQRL 62
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
E+ G +Q RI + +E+ RVLGGGLV GSL LIGG+PG+GKSTL+LQ +
Sbjct: 63 HEITSGEEQ---RIDMGD---DELNRVLGGGLVEGSLTLIGGEPGIGKSTLVLQTVLRLT 116
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRM-MIATEELFLYSSTDIEDIVEKVQPLSPRA 291
D V+Y+SGEES Q+ RADR+ L + T +E I ++ +P
Sbjct: 117 D-------KKVLYISGEESARQLKLRADRIPHPEANNLLIACETSLEQIFTNIKNTAPDL 169
Query: 292 LIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVL 351
+IIDSIQT+ + S G ++QV+EC++++L+FAK+T PV+L GH+ K G IAGP+VL
Sbjct: 170 VIIDSIQTISTENIDSSPGSIVQVRECSASILKFAKETGTPVILIGHINKEGSIAGPKVL 229
Query: 352 EHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHS 411
EHIVD VL EG++ YR+LRS+KNRFGST ELG++EM Q GL+ VSNPS++ L++ H
Sbjct: 230 EHIVDTVLQFEGDQHYMYRILRSIKNRFGSTAELGIYEMRQDGLRQVSNPSELLLTQDH- 288
Query: 412 DSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMKQAG 469
E ++G+A+A ++G R FLIE+QAL + + R G R +M+++VL K+ G
Sbjct: 289 --EGMSGIAIACAVEGIRPFLIEVQALVSTAAYGMPQRSATGFDLRRMNMLLAVLEKRVG 346
Query: 470 LKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVS 529
KL + +FLN+ G+ + + A DLAV +AI SS ++ I G+ GE+GL GE+R V+
Sbjct: 347 FKLAQKDVFLNIAGGLKVNDPAIDLAVISAILSSNMDTEIEAGVCMAGEVGLSGEIRPVN 406
Query: 530 RMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
R+E+R+S KLG+ + +VPK + L ++E + + ++E +F
Sbjct: 407 RIEQRISEAEKLGFTRMLVPKHNLQGLDRKKI-KIELVPVRKVEEAFRQLF 456
>gi|77414816|ref|ZP_00790935.1| DNA repair protein RadA [Streptococcus agalactiae 515]
gi|77159132|gb|EAO70324.1| DNA repair protein RadA [Streptococcus agalactiae 515]
Length = 454
Score = 344 bits (882), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 192/470 (40%), Positives = 280/470 (59%), Gaps = 26/470 (5%)
Query: 116 WVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRLLEV 175
+ C +CGY ++ G C C + + + + V +P +++ V +
Sbjct: 8 FTCQECGYQSPKYLGRCPNCSAWSSFVEEVEVQEVKNARVSLNGEKSRPTKLKDVSSINY 67
Query: 176 NKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVH 235
++ +D E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ +A+
Sbjct: 68 SRTKTDMD-----------EFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLAN-- 114
Query: 236 DLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIID 295
V+YVSGEES EQI R++R+ E +LY+ T+++ I +++ + P LIID
Sbjct: 115 ----KGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQSIRSEIEKIKPDFLIID 170
Query: 296 SIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIV 355
SIQT+ V+ G + QV+E T+ L++ AK NI + GHVTK G +AGPR+LEH+V
Sbjct: 171 SIQTIMSPEVSSVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTLAGPRMLEHMV 230
Query: 356 DAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEF 415
D VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS++FL E+ +
Sbjct: 231 DTVLYFEGERHHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGA-- 288
Query: 416 LAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGLKLQ 473
G A+ V M+G+R L E+QAL R G+ +R +I++VL K+ GL LQ
Sbjct: 289 -TGSAIVVTMEGTRPILAEVQALVTPTVFGNAKRTTTGLDFNRVSLIMAVLEKRCGLLLQ 347
Query: 474 ENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEK 533
+L GV L E A DLAVA AI SS+ E P +FIGEIGL GE+R V+R+E+
Sbjct: 348 NQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTNPKESFIGEIGLTGEIRRVTRIEQ 407
Query: 534 RVSTVAKLGYRKCIVPKSAEKSLATLGFEQ-MEFIGCKNLKEVINVVFTT 582
R++ +KLG+ K PK+ SLA + + ++ IG + +V+ VF+T
Sbjct: 408 RINEASKLGFTKIYAPKN---SLAGIEIPKGIDVIGVTTVSQVLKAVFST 454
>gi|449915774|ref|ZP_21796490.1| DNA repair protein RadA [Streptococcus mutans 15JP3]
gi|449156100|gb|EMB59584.1| DNA repair protein RadA [Streptococcus mutans 15JP3]
Length = 466
Score = 344 bits (882), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 201/471 (42%), Positives = 283/471 (60%), Gaps = 26/471 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T +VC +CGY ++ G C C S + E E V+ + E+ +PV+L
Sbjct: 18 KTTFVCQECGYNSPKYLGRCPNCSSWSSFV-----EEIEVAEVKNARVSLTGEKTRPVKL 72
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
+V R+ + E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ +A
Sbjct: 73 NQVTSSQAT---RVKTNM---EEFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLA 126
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+ V YVSGEES EQI R++R+ E +LY+ T+++ I +++ + P L
Sbjct: 127 N------KGTVFYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQSIRAEIEKIQPDFL 180
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQTV ++ G + QV+E T+ L++ AK NI + GHVTK G +AGPR+LE
Sbjct: 181 IIDSIQTVMSPEISSVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTLAGPRMLE 240
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS++FL E+
Sbjct: 241 HMVDTVLYFEGERQHTFRILRAVKNRFGSTNEIGIFEMRSGGLVEVLNPSQVFLEERLDG 300
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
+ G A+ V M+G+R L E+QAL R G+ +R +I++VL K+ GL
Sbjct: 301 A---TGSAIVVTMEGTRPILAEVQALVTPTVFGNAKRTTTGLDFNRVSLIMAVLEKRCGL 357
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ +L GV L E A DLAVA AI SS+ E P +IGEIGL GE+R V+R
Sbjct: 358 LLQNQDAYLKSAGGVRLDEPAIDLAVAVAIASSYKEKPTNPQECYIGEIGLTGEIRRVNR 417
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQ-MEFIGCKNLKEVINVVF 580
+E+R++ +KLG+ K VPK+ SL+ L Q ++ IG + EV+ VF
Sbjct: 418 IEQRLNEASKLGFTKIFVPKN---SLSGLTIPQGVQVIGVTTVGEVLKKVF 465
>gi|290581149|ref|YP_003485541.1| DNA repair protein [Streptococcus mutans NN2025]
gi|449969677|ref|ZP_21813369.1| DNA repair protein RadA [Streptococcus mutans 2VS1]
gi|450066554|ref|ZP_21846037.1| DNA repair protein RadA [Streptococcus mutans NLML9]
gi|450092935|ref|ZP_21856348.1| DNA repair protein RadA [Streptococcus mutans W6]
gi|450101440|ref|ZP_21859064.1| DNA repair protein RadA [Streptococcus mutans SF1]
gi|450150108|ref|ZP_21876457.1| DNA repair protein RadA [Streptococcus mutans 14D]
gi|450165009|ref|ZP_21881652.1| DNA repair protein RadA [Streptococcus mutans B]
gi|254998048|dbj|BAH88649.1| putative DNA repair protein [Streptococcus mutans NN2025]
gi|449174011|gb|EMB76533.1| DNA repair protein RadA [Streptococcus mutans 2VS1]
gi|449208845|gb|EMC09408.1| DNA repair protein RadA [Streptococcus mutans NLML9]
gi|449217726|gb|EMC17761.1| DNA repair protein RadA [Streptococcus mutans W6]
gi|449220054|gb|EMC19980.1| DNA repair protein RadA [Streptococcus mutans SF1]
gi|449233961|gb|EMC33001.1| DNA repair protein RadA [Streptococcus mutans 14D]
gi|449241124|gb|EMC39769.1| DNA repair protein RadA [Streptococcus mutans B]
Length = 466
Score = 344 bits (882), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 200/471 (42%), Positives = 281/471 (59%), Gaps = 26/471 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T +VC +CGY ++ G C C S + + V T E+ +PV+L
Sbjct: 18 KTTFVCQECGYNSPKYLGRCPNCSSWSSFVEEVEVAEVKNARVSLTG-----EKTRPVKL 72
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
+V R+ + E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ +A
Sbjct: 73 NQVTSSQAT---RVKTNM---EEFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLA 126
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+ V YVSGEES EQI R++R+ E +LY+ T+++ I +++ + P L
Sbjct: 127 N------KGTVFYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQSIRAEIEKIQPDFL 180
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQTV ++ G + QV+E T+ L++ AK NI + GHVTK G +AGPR+LE
Sbjct: 181 IIDSIQTVMSPEISSVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTLAGPRMLE 240
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS++FL E+
Sbjct: 241 HMVDTVLYFEGERQHTFRILRAVKNRFGSTNEIGIFEMRSGGLVEVLNPSQVFLEERLDG 300
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
+ G A+ V M+G+R L E+QAL R G+ +R +I++VL K+ GL
Sbjct: 301 A---TGSAIVVTMEGTRPILAEVQALVTPTVFGNAKRTTTGLDFNRVSLIMAVLEKRCGL 357
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ +L GV L E A DLAVA AI SS+ E P +IGEIGL GE+R V+R
Sbjct: 358 LLQNQDAYLKSAGGVRLDEPAIDLAVAVAIASSYKEKPTNPQECYIGEIGLTGEIRRVNR 417
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQ-MEFIGCKNLKEVINVVF 580
+E+R++ +KLG+ K VPK+ SL+ L Q ++ IG + EV+ VF
Sbjct: 418 IEQRLNEASKLGFTKIFVPKN---SLSGLTIPQGIQVIGVTTVSEVLKKVF 465
>gi|365157356|ref|ZP_09353629.1| DNA repair protein RadA [Bacillus smithii 7_3_47FAA]
gi|363625257|gb|EHL76299.1| DNA repair protein RadA [Bacillus smithii 7_3_47FAA]
Length = 457
Score = 344 bits (882), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 197/467 (42%), Positives = 280/467 (59%), Gaps = 23/467 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEV-QPVR 171
+T ++C CGY +W G C C M E + ++T++ + + +P
Sbjct: 5 KTKFICQSCGYESPKWMGRCPGCGEWNQM----VEEVEMTGRQKKTFIHSESSRISKPSP 60
Query: 172 LLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAII 231
L+ V + P + E RVLGGG+V GSLVLIGGDPG+GKSTLLLQ+++ +
Sbjct: 61 LITVQSTEE------PRTTTNMKEFNRVLGGGIVAGSLVLIGGDPGIGKSTLLLQISSQL 114
Query: 232 ADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRA 291
A V+Y+SGEES +QI RADR+ + + L++YS T++E I ++ L+P
Sbjct: 115 AS-----GGHKVLYISGEESAKQIKLRADRLNVDSSNLYIYSETNLELINLAIEQLNPEF 169
Query: 292 LIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVL 351
+IIDSIQTVY V + G + QV+E T+ +R AK + + + GHVTK G IAGPR+L
Sbjct: 170 VIIDSIQTVYHPEVTSAPGSVSQVRESTAEFMRMAKVQGMAIFIVGHVTKEGSIAGPRIL 229
Query: 352 EHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHS 411
EH+VD VLY EGE+ SYR+LR+VKNRFGST+E+G+FEM + GL V NPS+IFL E+
Sbjct: 230 EHMVDTVLYFEGERHHSYRILRAVKNRFGSTNEMGIFEMKETGLIEVENPSEIFLEERAQ 289
Query: 412 DSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVLMKQAG 469
+ +G V M+G+R L+EIQAL S + R GI +R ++++VL K+ G
Sbjct: 290 SA---SGSTVVASMEGTRPVLVEIQALIAPTSFNYPRRMATGIDHNRVSLLMAVLEKRVG 346
Query: 470 LKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVS 529
L LQ +L V GV L E A DLAVA +I SSF + P + IGE+GL GE+R V+
Sbjct: 347 LLLQNQDAYLKVAGGVKLDEPAIDLAVAVSIVSSFRDKPTRSTDCIIGEVGLTGEVRRVT 406
Query: 530 RMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVI 576
R+E+RV KLG+ + I+P T G ++E IG ++E +
Sbjct: 407 RIEQRVREAEKLGFSRVIIPAHNLGGWNTPG--KIEVIGVSTVEEAL 451
>gi|450177589|ref|ZP_21886471.1| DNA repair protein RadA [Streptococcus mutans SM1]
gi|449243472|gb|EMC41896.1| DNA repair protein RadA [Streptococcus mutans SM1]
Length = 466
Score = 344 bits (882), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 201/471 (42%), Positives = 282/471 (59%), Gaps = 26/471 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T +VC CGY ++ G C C S + E E V+ + E+ +PV+L
Sbjct: 18 KTTFVCQKCGYNSPKYLGRCPNCSSWSSFV-----EEIEVAEVKNARVSLTGEKTRPVKL 72
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
+V R+ + E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ +A
Sbjct: 73 NQVTSSQAT---RVKTNM---EEFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLA 126
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+ V YVSGEES EQI R++R+ E +LY+ T+++ I +++ + P L
Sbjct: 127 N------KGTVFYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQSIRAEIEKIQPDFL 180
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQTV ++ G + QV+E T+ L++ AK NI + GHVTK G +AGPR+LE
Sbjct: 181 IIDSIQTVMSPEISSVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTLAGPRMLE 240
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS++FL E+
Sbjct: 241 HMVDTVLYFEGERQHTFRILRAVKNRFGSTNEIGIFEMRSGGLVEVLNPSQVFLEERLDG 300
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
+ G A+ V M+G+R L E+QAL R G+ +R +I++VL K+ GL
Sbjct: 301 A---TGSAIVVTMEGTRPILAEVQALVTPTVFGNAKRTTTGLDFNRVSLIMAVLEKRCGL 357
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ +L GV L E A DLAVA AI SS+ E P +IGEIGL GE+R V+R
Sbjct: 358 LLQNQDAYLKSAGGVRLDEPAIDLAVAVAIASSYKEKPTNPQECYIGEIGLTGEIRRVNR 417
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQ-MEFIGCKNLKEVINVVF 580
+E+R++ +KLG+ K VPK+ SL+ L Q ++ IG + EV+ VF
Sbjct: 418 IEQRLNEASKLGFTKIFVPKN---SLSGLTIPQGIQVIGVTTVSEVLKKVF 465
>gi|229074144|ref|ZP_04207190.1| DNA repair protein radA [Bacillus cereus Rock4-18]
gi|228708914|gb|EEL61041.1| DNA repair protein radA [Bacillus cereus Rock4-18]
Length = 438
Score = 344 bits (882), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 200/467 (42%), Positives = 282/467 (60%), Gaps = 38/467 (8%)
Query: 118 CSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRLLEV-N 176
C CG QW + E V + +R + + + V + P RL EV
Sbjct: 4 CPGCG----QWNTLVEEMEPVVSSRRLNYANAIQTEVTK------------PRRLTEVET 47
Query: 177 KGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHD 236
K +++ E RVLGGG+V GSLVLIGGDPG+GKSTLLLQ+++ +AD
Sbjct: 48 KSEARIETEF-------QEFNRVLGGGIVDGSLVLIGGDPGIGKSTLLLQISSQLAD--- 97
Query: 237 LGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIIDS 296
V+Y+SGEES +QI RADR+ + LF+ + TD++ I ++ ++P ++IDS
Sbjct: 98 --SSYDVLYISGEESAKQIKLRADRLHVKGSNLFVVAETDLQRIAAHIEEMNPAFVVIDS 155
Query: 297 IQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVD 356
IQT++L V + G + QV+ECT+ L++ AK IP+ + GHVTK G IAGPR+LEH+VD
Sbjct: 156 IQTIHLPEVTSAPGSVAQVRECTAELMKLAKTKGIPIFIVGHVTKEGAIAGPRMLEHMVD 215
Query: 357 AVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFL 416
AVLY EG++ +YR+LR+VKNRFGST+E+G+FEM +LGL V NPS+IFL E+ +
Sbjct: 216 AVLYFEGDRHHTYRILRAVKNRFGSTNEMGIFEMKELGLAEVLNPSEIFLEERPVG---V 272
Query: 417 AGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVLMKQAGLKLQE 474
AG V M+G+R L+EIQAL S R GI +R +I++VL K+ GL LQ
Sbjct: 273 AGSTVVASMEGTRPVLVEIQALISPTSFGNPRRMATGIDHNRVSLIMAVLEKRTGLLLQN 332
Query: 475 NAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKR 534
+L V G+ L E A DLAVA +I SSF + A IGE+GL GE+R VSR+E+R
Sbjct: 333 QDAYLKVAGGLKLDEPAIDLAVALSIASSFRDKSTAPTDAVIGEVGLTGEIRRVSRIEQR 392
Query: 535 VSTVAKLGYRKCIVPKSAEKSLATLGF-EQMEFIGCKNLKEVINVVF 580
V AKLG+++ I+P+ K+L + +E +G NL E + +
Sbjct: 393 VQEAAKLGFQRVIIPR---KNLGGWTIPDGIEVVGVSNLGEALRLTL 436
>gi|284929472|ref|YP_003421994.1| DNA repair protein RadA [cyanobacterium UCYN-A]
gi|284809916|gb|ADB95613.1| DNA repair protein RadA [cyanobacterium UCYN-A]
Length = 484
Score = 344 bits (882), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 199/494 (40%), Positives = 297/494 (60%), Gaps = 38/494 (7%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKR---YSAGESDEGPVVQRTWLPQKPEEVQP 169
R +VC+ CG QW+G C +C++ G+++ + SD +R+ K +
Sbjct: 5 RNVYVCNICGTESVQWFGKCESCQTYGSLEEKIVVTPSSSDNILRRERSLYSNKENNSRA 64
Query: 170 VRLLEVNKGMKQLDWRIPLSGLFG-NEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMA 228
++ ++ + G +E+ RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ+A
Sbjct: 65 TPKPNISNYFDEIVDNEKMQFQSGYDELDRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVA 124
Query: 229 AIIADVHDLGEPSP-VVYVSGEESVEQIGNRADR-MMIATEE---------------LFL 271
+ L + P ++Y+S EES +QI RA R MM+ TEE LF+
Sbjct: 125 ------NKLAQKLPRILYISAEESAQQIKLRASRLMMLGTEEKHIERKELERCNRKNLFI 178
Query: 272 YSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNI 331
S T++E+I+ +++ L P+ IIDSIQT+YL + + G + QVKECTS L+R AK+ NI
Sbjct: 179 LSETNLEEILRELESLQPQVAIIDSIQTLYLSTLNSAPGSVSQVKECTSVLMRLAKRDNI 238
Query: 332 PVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMS 391
+L+ GHVTK G IAGPRVLEH+VD VLY EG++++S+R+LRSVKNRFG+T E+G+FEM
Sbjct: 239 TLLIVGHVTKEGAIAGPRVLEHLVDTVLYFEGDRYASHRVLRSVKNRFGATHEIGIFEMI 298
Query: 392 QLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVS--RHV 449
+ GL V NPS++F+ Q+ E + G A+ V +G+R ++E+QAL S S R
Sbjct: 299 ESGLVEVKNPSELFMGNQN---ELVPGTAIVVACEGTRPLVVELQALVSPTSYPSPRRST 355
Query: 450 NGIQASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLE-FP 508
GI SR I++VL K+ G+ L + ++++ G+ + E A DL +A AI +S +
Sbjct: 356 TGIAYSRLQQILAVLEKRVGIPLSKLDVYVSSTGGLGVEEPAADLGIAIAITASVKDKVI 415
Query: 509 IPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIG 568
IPN I IGE+GLGG++R V ++E R+ KLG+ + IVP S + ++ I
Sbjct: 416 IPNTI-LIGEVGLGGQVRSVPQLELRLKEAVKLGFTRAIVPNSKNYTFNV----NLKVIP 470
Query: 569 CKNLKEVINVVFTT 582
+ + IN F++
Sbjct: 471 VGKVTDAINAAFSS 484
>gi|354604014|ref|ZP_09022007.1| DNA repair protein RadA [Alistipes indistinctus YIT 12060]
gi|353348446|gb|EHB92718.1| DNA repair protein RadA [Alistipes indistinctus YIT 12060]
Length = 456
Score = 344 bits (882), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 185/443 (41%), Positives = 271/443 (61%), Gaps = 23/443 (5%)
Query: 116 WVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRLLEV 175
+ C +CGY +W G C +C T + + P +P+ V+ ++ E
Sbjct: 8 FFCRNCGYESAKWVGKCPSCGEWNTFVEETVQKEPAQPSFTPAGERNRPQPVREIQRQEY 67
Query: 176 NKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVH 235
+ + L E+ RVLGGGLV GS++L+GG+PG+GKSTL LQ+A +
Sbjct: 68 TR-----------TDLGNGEMNRVLGGGLVQGSMILLGGEPGIGKSTLSLQLALKAGGIK 116
Query: 236 DLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIID 295
L YVSGEES QI RA+R+ I +E ++YS T++E+I+ +V P +IID
Sbjct: 117 TL-------YVSGEESPHQIKMRAERIGIGNDECYIYSETNLENILRQVTDYKPDLVIID 169
Query: 296 SIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIV 355
SIQT++ + S G + Q++EC + L+++AK+TN V++ GH+TK G IAGP++LEHIV
Sbjct: 170 SIQTIHSDSIDSSPGSVSQIRECAALLMKYAKQTNTSVIIIGHITKDGIIAGPKILEHIV 229
Query: 356 DAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEF 415
D VL EG+ + YR+LRS+KNRFG+T E+GVFEM GL V+NPS+I LS H D E
Sbjct: 230 DVVLQFEGDNNNIYRILRSIKNRFGATFEIGVFEMRGEGLIEVTNPSEILLS--HYD-EP 286
Query: 416 LAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMKQAGLKLQ 473
L+G+AV +DG+R++LIE QAL + + T R G + R +M+++VL K+ GLK+
Sbjct: 287 LSGIAVGAAVDGARAYLIETQALVSTAAYGTPQRSATGFDSRRLNMLLAVLEKRVGLKMY 346
Query: 474 ENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEK 533
+FLN G +++T D++V AAI SS+ + P+ N F GEIGL GE+R R E+
Sbjct: 347 TKDVFLNFAGGFKISDTGLDMSVVAAILSSYFDRPLNNTTCFAGEIGLSGEIRPAPRSEQ 406
Query: 534 RVSTVAKLGYRKCIVPKSAEKSL 556
R+S A+LG+ + IV KSL
Sbjct: 407 RISEAARLGFGRIIVSGYLRKSL 429
>gi|315222781|ref|ZP_07864668.1| DNA repair protein RadA [Streptococcus anginosus F0211]
gi|315188144|gb|EFU21872.1| DNA repair protein RadA [Streptococcus anginosus F0211]
Length = 467
Score = 344 bits (882), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 195/471 (41%), Positives = 276/471 (58%), Gaps = 26/471 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+ +VC +C Y ++ G C C + + + + T +P ++ V
Sbjct: 19 KATFVCQNCEYHSPKYLGRCPNCGAWSSFVEEVEVTEVKNARISLTGGKSRPMKLAEVTS 78
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
+ VN+ ++ E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++
Sbjct: 79 INVNRTKTDME-----------EFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVST--- 124
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
L V+YVSGEES EQI RA+R+ E +LY+ T+++ I +++ + P L
Sbjct: 125 ---QLSHKGTVLYVSGEESAEQIKLRAERLGDIDSEFYLYAETNMQSIRAEIEKIKPDFL 181
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQT+ ++ G + QV+E T+ L++ AK NI + GH+TK G +AGPR LE
Sbjct: 182 IIDSIQTILSPEISSVQGSVSQVREVTAELMQLAKTNNIATFIVGHMTKEGTLAGPRTLE 241
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS++FL E+
Sbjct: 242 HMVDTVLYFEGERQHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDG 301
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
+ G ++ V M+G+R L E+QAL R G+ +RA +I++VL K+AGL
Sbjct: 302 A---TGSSIVVTMEGTRPILAEVQALVTPTMFGNAKRTTTGLDFNRASLIMAVLEKRAGL 358
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ +L GV L E A DLAVA AI SS+ + P FIGEIGL GE+R V+R
Sbjct: 359 LLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDLPTNPQECFIGEIGLTGEIRRVNR 418
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGF-EQMEFIGCKNLKEVINVVF 580
+E+R++ AKLG+ K PK+ SL L E +E IG + EV+ VF
Sbjct: 419 IEQRINEAAKLGFTKVYAPKN---SLNGLNIPETIEVIGVTTIGEVLEKVF 466
>gi|22536295|ref|NP_687146.1| DNA repair protein RadA [Streptococcus agalactiae 2603V/R]
gi|25010184|ref|NP_734579.1| DNA repair protein RadA [Streptococcus agalactiae NEM316]
gi|76787306|ref|YP_328834.1| DNA repair protein RadA [Streptococcus agalactiae A909]
gi|77406221|ref|ZP_00783290.1| DNA repair protein RadA [Streptococcus agalactiae H36B]
gi|77412159|ref|ZP_00788481.1| DNA repair protein RadA [Streptococcus agalactiae CJB111]
gi|339302503|ref|ZP_08651551.1| DNA repair protein RadA [Streptococcus agalactiae ATCC 13813]
gi|406708632|ref|YP_006763358.1| DNA repair protein RadA [Streptococcus agalactiae GD201008-001]
gi|417004175|ref|ZP_11942908.1| DNA repair protein RadA [Streptococcus agalactiae FSL S3-026]
gi|421146891|ref|ZP_15606593.1| DNA repair protein RadA [Streptococcus agalactiae GB00112]
gi|424050120|ref|ZP_17787669.1| DNA repair protein RadA [Streptococcus agalactiae ZQ0910]
gi|22533117|gb|AAM99018.1|AE014196_14 DNA repair protein RadA [Streptococcus agalactiae 2603V/R]
gi|23094535|emb|CAD45754.1| unknown [Streptococcus agalactiae NEM316]
gi|76562363|gb|ABA44947.1| DNA repair protein RadA [Streptococcus agalactiae A909]
gi|77161777|gb|EAO72766.1| DNA repair protein RadA [Streptococcus agalactiae CJB111]
gi|77175171|gb|EAO77971.1| DNA repair protein RadA [Streptococcus agalactiae H36B]
gi|319744028|gb|EFV96406.1| DNA repair protein RadA [Streptococcus agalactiae ATCC 13813]
gi|341577974|gb|EGS28371.1| DNA repair protein RadA [Streptococcus agalactiae FSL S3-026]
gi|389648402|gb|EIM69909.1| DNA repair protein RadA [Streptococcus agalactiae ZQ0910]
gi|401686419|gb|EJS82397.1| DNA repair protein RadA [Streptococcus agalactiae GB00112]
gi|406649517|gb|AFS44918.1| DNA repair protein RadA [Streptococcus agalactiae GD201008-001]
Length = 454
Score = 344 bits (882), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 192/470 (40%), Positives = 280/470 (59%), Gaps = 26/470 (5%)
Query: 116 WVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRLLEV 175
+ C +CGY ++ G C C + + + + V +P +++ V +
Sbjct: 8 FTCQECGYQSPKYLGRCPNCSAWSSFVEEVEVQEVKNARVSLNGEKSRPTKLKDVSSINY 67
Query: 176 NKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVH 235
++ +D E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ +A+
Sbjct: 68 SRTKTDMD-----------EFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLAN-- 114
Query: 236 DLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIID 295
V+YVSGEES EQI R++R+ E +LY+ T+++ I +++ + P LIID
Sbjct: 115 ----KGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQSIRSEIEKIKPDFLIID 170
Query: 296 SIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIV 355
SIQT+ V+ G + QV+E T+ L++ AK NI + GHVTK G +AGPR+LEH+V
Sbjct: 171 SIQTIMSPEVSSVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTLAGPRMLEHMV 230
Query: 356 DAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEF 415
D VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS++FL E+ +
Sbjct: 231 DTVLYFEGERHHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGA-- 288
Query: 416 LAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGLKLQ 473
G A+ V M+G+R L E+QAL R G+ +R +I++VL K+ GL LQ
Sbjct: 289 -TGSAIVVTMEGTRPILAEVQALVTPTVFGNAKRTTTGLDFNRVSLIMAVLEKRCGLLLQ 347
Query: 474 ENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEK 533
+L GV L E A DLAVA AI SS+ E P +FIGEIGL GE+R V+R+E+
Sbjct: 348 NQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTNPQESFIGEIGLTGEIRRVTRIEQ 407
Query: 534 RVSTVAKLGYRKCIVPKSAEKSLATLGFEQ-MEFIGCKNLKEVINVVFTT 582
R++ +KLG+ K PK+ SLA + + ++ IG + +V+ VF+T
Sbjct: 408 RINEASKLGFTKIYAPKN---SLAGIEIPKGIDVIGVTTVSQVLKAVFST 454
>gi|296131789|ref|YP_003639036.1| DNA repair protein RadA [Thermincola potens JR]
gi|296030367|gb|ADG81135.1| DNA repair protein RadA [Thermincola potens JR]
Length = 456
Score = 344 bits (882), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 199/478 (41%), Positives = 287/478 (60%), Gaps = 39/478 (8%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTM-------KRYSAGESDEGPVVQRTWLPQKPE 165
R + C +CG+ +W G C +CES + K+ +AG + +Q + P
Sbjct: 5 RVRFCCQECGFESLKWLGRCPSCESWNSFVEEPLPAKKGAAGSGN----LQMSGQPVSIS 60
Query: 166 EVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLL 225
+V V + G+ +LD RVLGGG+V GSL+LIGGDPG+GKSTL L
Sbjct: 61 DVVTVEEIRYCTGIGELD--------------RVLGGGIVRGSLILIGGDPGIGKSTLGL 106
Query: 226 QMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQ 285
Q A+ I+ + V+YVSGEES+ Q RA R+ + +L++ S T +E I+ ++
Sbjct: 107 QAASAISI-----KTGRVLYVSGEESIHQTKLRALRLGAVSPDLYIVSETSLEGILRHIE 161
Query: 286 PLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDI 345
L P +++DSIQTV+ V + GG+ QV+ECT+ L+R AK T IPV + GHVTK G +
Sbjct: 162 KLQPNLVVVDSIQTVFTEEVHAAPGGVSQVRECTAHLMRLAKSTGIPVFIVGHVTKEGYL 221
Query: 346 AGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIF 405
AGPRVLEH+VD VLY EG++ ++R+LR+VKNRFGST+E+GVFEM + GL V+NPS+IF
Sbjct: 222 AGPRVLEHMVDTVLYFEGDRHHNFRVLRAVKNRFGSTNEIGVFEMGEHGLVPVANPSEIF 281
Query: 406 LSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVS---RHVNGIQASRADMIIS 462
L+E+ + G V ++G+R L+E+QAL VS S + R GI +R ++ +
Sbjct: 282 LAERTPGA---TGSVVIPAVEGTRPVLVEVQAL-VSPSNFAAPRRMTKGIDHNRVSLLAA 337
Query: 463 VLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLG 522
VL K+ GL L IF+NVV GV L E A DL + AAI SS E P+ +GE+GL
Sbjct: 338 VLEKRVGLHLANQDIFVNVVGGVKLDEPAIDLGLVAAIASSLKEIPVNPQTLVVGEVGLT 397
Query: 523 GELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
GE+R V ++EKRV AKLG++ I P + +L + I K++ EV++++
Sbjct: 398 GEVRAVGQLEKRVKEGAKLGFKHIIAPGG--NKVQSLEVNGINIIPVKSVAEVMDIIL 453
>gi|424780833|ref|ZP_18207700.1| DNA repair protein RadA [Catellicoccus marimammalium M35/04/3]
gi|422842534|gb|EKU26985.1| DNA repair protein RadA [Catellicoccus marimammalium M35/04/3]
Length = 459
Score = 344 bits (882), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 193/478 (40%), Positives = 289/478 (60%), Gaps = 27/478 (5%)
Query: 109 GKANRTNWVCSDCGYTDGQWWGMCRACESVGTM----KRYSAGESDEGPVVQRTWLPQKP 164
K +T +VC +CGYT ++ G C C T+ + + D V KP
Sbjct: 2 AKKAKTRFVCQECGYTTFKYIGCCPNCGQWNTIVEEREETVPVKEDRHNRVSLQGERSKP 61
Query: 165 EEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLL 224
+++ ++ +V++ +L +E+ RVLGGG+VPGSLVLIGGDPG+GKSTLL
Sbjct: 62 QKLTSIQHSKVDRIQTEL-----------SELNRVLGGGVVPGSLVLIGGDPGIGKSTLL 110
Query: 225 LQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKV 284
LQ++ + L E V+YV+GEES EQ+ RA+R+ + ++Y T++ +I +
Sbjct: 111 LQISQQLT----LAE-QKVLYVTGEESGEQVKLRAERLSQKGNDFYIYPETNMTEIRHAI 165
Query: 285 QPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGD 344
+ L P +I+DSIQT+ + +AG + QV+E T+ L++ AK I + + GHVTK G
Sbjct: 166 EDLQPDIVIVDSIQTMVEEDITSAAGSVSQVRETTADLMKIAKTNGIAIFIVGHVTKEGA 225
Query: 345 IAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKI 404
+AGPR+LEH+VD VLY EG+++ S+R+LR+VKNRFGST+E+G+FEM Q GL V NPS++
Sbjct: 226 LAGPRMLEHMVDTVLYFEGDRYQSFRILRAVKNRFGSTNEIGIFEMRQQGLVEVKNPSEV 285
Query: 405 FLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIIS 462
FL E+ E +G A+ V M+G+R L+EIQAL R +G+ +R +I++
Sbjct: 286 FLEERL---EGASGSAIVVAMEGTRPILVEIQALLSPTLYGNARRTSSGLDYNRISLILA 342
Query: 463 VLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLG 522
VL K++GL LQ +L GV L E A DLA+A AI SS+ E + F+GEIGL
Sbjct: 343 VLEKRSGLSLQNQDAYLKATGGVKLDEPAIDLAIAMAIVSSYKEQETQSKDCFVGEIGLT 402
Query: 523 GELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
GE+R V+R+E+R+ KLG+++ +PK+ + + +E IG +KE I VF
Sbjct: 403 GEIRSVTRVEQRIQEAKKLGFQRIFIPKNNLQDWKPIA--GIEVIGVATIKEAIRYVF 458
>gi|81429295|ref|YP_396296.1| DNA repair protein RadA [Lactobacillus sakei subsp. sakei 23K]
gi|78610938|emb|CAI55990.1| Putative DNA repair protein RadA [Lactobacillus sakei subsp. sakei
23K]
Length = 454
Score = 344 bits (882), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 192/473 (40%), Positives = 287/473 (60%), Gaps = 29/473 (6%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T +VC +CGY+ ++ G C C + M E ++ ++ +P ++
Sbjct: 5 KTQFVCQNCGYSSPRFLGRCPNCGAWNQM----VEEREQPAAAAKSNFTISGRATEPEKI 60
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
VN K+ + L NE+ RVLGGG+VPGSL+LIGGDPG+GKSTLLLQ++ +
Sbjct: 61 STVNI-QKEPRVKTEL-----NELNRVLGGGVVPGSLILIGGDPGIGKSTLLLQVSGQLE 114
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
V ++YVSGEES QI RA+R+ + ++L+LY TD+ +I +++ L P +
Sbjct: 115 KV------GKILYVSGEESASQIKMRANRLGVNGDQLYLYPETDMGNIRHQIETLKPEYV 168
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
+IDSIQT+ V + G + QV++ T+ L+R AK I + + GHVTK G IAGP++LE
Sbjct: 169 VIDSIQTMSEPEVTSAVGSVSQVRQVTAELMRIAKTNQITIFVVGHVTKEGAIAGPKILE 228
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EG+ +YR+LRSVKNRFGST+E+G+FEM + GLQ V+NPS+IFL E+ +
Sbjct: 229 HMVDTVLYFEGDTHHTYRILRSVKNRFGSTNEIGIFEMREAGLQEVANPSEIFLEERLAG 288
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
+ G AV V M+G+R L+E+Q L R +G+ +R +I++VL K+A L
Sbjct: 289 A---TGSAVVVSMEGTRPILVELQTLITPTLFGNAKRTSSGLDHNRVSLIMAVLEKRASL 345
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
L +L GV L E A DLA+A +I SS+ + IP F+GEIGL GE+R V+R
Sbjct: 346 MLSNQDAYLKATGGVKLDEPAIDLAMAVSIASSYRDKEIPPTDCFVGEIGLTGEIRRVNR 405
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFE---QMEFIGCKNLKEVINVVF 580
+E+RV AKLG+++ VPK+ + G++ ++ +G + E + VF
Sbjct: 406 IEQRVGEAAKLGFKRIYVPKNNLQ-----GWDPPTDIQVVGVTTIAETLKKVF 453
>gi|423215745|ref|ZP_17202272.1| DNA repair protein RadA [Bacteroides xylanisolvens CL03T12C04]
gi|392691503|gb|EIY84747.1| DNA repair protein RadA [Bacteroides xylanisolvens CL03T12C04]
Length = 455
Score = 343 bits (881), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 186/470 (39%), Positives = 285/470 (60%), Gaps = 22/470 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T +VCS+CG +W G C +C G Y + P +R + ++ +P+ L
Sbjct: 5 KTVYVCSNCGQDSPKWVGKCPSC---GEWNTYVEEIVRKEPTNRRPVSGIETQKPKPLAL 61
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
++ + P + +E+ RVLGGGLVPGSLVLIGG+PG+GKSTL++Q +
Sbjct: 62 SDIEANDE------PRINMHDDELNRVLGGGLVPGSLVLIGGEPGIGKSTLVMQTVLHMP 115
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+ ++YVSGEES Q+ RADR+ + + + T +E I ++ +P +
Sbjct: 116 E-------KKILYVSGEESARQLKLRADRLSDTSSDCLIVCETSLEQIYVHIKNTNPDLV 168
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQT+ + S G + QV+EC++++LRFAK+T+ PVLL GH+ K G IAGP+VLE
Sbjct: 169 IIDSIQTISTESIESSPGSIAQVRECSASILRFAKETHTPVLLIGHINKEGSIAGPKVLE 228
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
HIVD VL EG++ YR+LRS+KNRFGST ELG++EM Q GL+ V+NPS++ LS+ H
Sbjct: 229 HIVDTVLQFEGDQHYMYRILRSIKNRFGSTAELGIYEMRQDGLRQVNNPSELLLSQDH-- 286
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
E ++G+A+A ++G R FLIE QAL S R G R +M+++VL K+ G
Sbjct: 287 -EGMSGVAIASAIEGIRPFLIETQALVSSAVYGNPQRSATGFDLRRMNMLLAVLEKRVGF 345
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
KL + +FLN+ G+ + + A DL V +AI SS ++ I + GEIGL GE+R V+R
Sbjct: 346 KLAQKDVFLNIAGGLKVNDPAIDLPVISAILSSNMDAAIEPEVCMAGEIGLSGEIRPVNR 405
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+E+R+ KLG+++ ++PK + + T ++E + + ++E +F
Sbjct: 406 IEQRIGEAEKLGFKRFLLPKYNLQGIDTTKL-KIELVPVRKVEEAFRALF 454
>gi|317051721|ref|YP_004112837.1| DNA repair protein RadA [Desulfurispirillum indicum S5]
gi|316946805|gb|ADU66281.1| DNA repair protein RadA [Desulfurispirillum indicum S5]
Length = 453
Score = 343 bits (881), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 191/471 (40%), Positives = 296/471 (62%), Gaps = 26/471 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
R+ + C+ CG + +W G C C + G++ ++ P+VQ+T Q + L
Sbjct: 5 RSVYQCNQCGSSFPRWNGKCPDCGTWGSISE------EKVPLVQKTSGAPAATPQQTISL 58
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
+V RIP S E+ VLGGGLVPGS+VL+GGDPG+GKSTL +Q+A +
Sbjct: 59 EQVTSCATS---RIPTSM---EELEPVLGGGLVPGSMVLLGGDPGIGKSTLTMQLAGNLC 112
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+ ++Y+SGEES++Q+ RADR+ A ++F+ +ST +E+++ +Q +P+ L
Sbjct: 113 K-----DGLSILYISGEESLQQLKMRADRLGTAQGKIFVCTSTSLEEVLALLQQTTPQLL 167
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQT+ + + +AG + Q++ CT+AL+ AK + +L GHVTK G +AGPRVLE
Sbjct: 168 IIDSIQTLSSQELDSAAGTVSQIRHCTAALMEQAKANSTATILVGHVTKEGVLAGPRVLE 227
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EG++F ++R+LRSVKNRFGST+E+G+FEM+ GL +V NPS++ L+E+
Sbjct: 228 HLVDVVLYFEGDRFQNFRILRSVKNRFGSTNEVGIFEMTAQGLVSVDNPSQMLLAEK--- 284
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVS---GSTVSRHVNGIQASRADMIISVLMKQAG 469
E +G M+G+R ++EIQ+L S G+ V R GI SR +MI++VL K+ G
Sbjct: 285 PEMASGSVATATMEGTRPLIVEIQSLVSSSFFGNPV-RSTIGIDHSRVNMILAVLEKKLG 343
Query: 470 LKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVS 529
+ + N ++ N++ G+ + ET+GDLAVAAA+ SSF P+ + GEIGL GE+R VS
Sbjct: 344 MNISNNDVYTNIIGGIKINETSGDLAVAAALVSSFRNIPLDKQLLIFGEIGLCGEVRSVS 403
Query: 530 RMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+ + R+ KLG+ IVP+ + K + E+ G +++EV++ +F
Sbjct: 404 QAQLRIQEGRKLGFHHFIVPEQSAKKIPL--RERKGITGVSSVEEVMDHLF 452
>gi|188994194|ref|YP_001928446.1| DNA repair protein RadA [Porphyromonas gingivalis ATCC 33277]
gi|334146313|ref|YP_004509240.1| DNA repair protein RadA [Porphyromonas gingivalis TDC60]
gi|188593874|dbj|BAG32849.1| DNA repair protein [Porphyromonas gingivalis ATCC 33277]
gi|333803467|dbj|BAK24674.1| DNA repair protein RadA [Porphyromonas gingivalis TDC60]
Length = 461
Score = 343 bits (880), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 182/439 (41%), Positives = 271/439 (61%), Gaps = 19/439 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T +VC CG +W G C AC + G ++++P++ ++ +P L
Sbjct: 5 KTIYVCRSCGTKYAKWQGNCNACGEWNCIDEEKVPAPASGKHAAKSFMPRE-QDNRPRLL 63
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
+V G ++ RI L E RVLGGG+V G+ VL+GG+PG+GKSTL+LQ +
Sbjct: 64 QDVESGDEE---RIRLGD---EEFDRVLGGGIVKGAFVLLGGEPGIGKSTLILQTVLRLP 117
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+ L YVSGEES Q+ RA+R+ A E ++Y T+IE I+ + + L+P L
Sbjct: 118 QLRTL-------YVSGEESARQLKMRAERLGQAMNECYVYCETNIERILSRAEELTPDLL 170
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
+IDSIQTVY + SAG + Q++EC + LL++ K T IPV++ GH+TK G IAGP+VLE
Sbjct: 171 VIDSIQTVYTEEMESSAGSVGQIRECAALLLKYCKTTGIPVIVIGHITKEGSIAGPKVLE 230
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
HIVD VL +G+K YR+LR KNR+GST ELG++EM Q GL+ V NPS+ ++ D
Sbjct: 231 HIVDTVLLFDGDKHHLYRILRGQKNRYGSTSELGIYEMRQDGLRGVENPSEHLITRNRED 290
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
L+G+A+AV M+G R LIE QAL S + R G R +M+++VL K+AG
Sbjct: 291 ---LSGIAIAVAMEGIRPILIEAQALVSSAIYANPQRSATGFDIRRMNMLLAVLEKRAGF 347
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
KL + +FLN+ G+ + + A DLAV +A+ +S L+ IP + GE+GL GE+R VSR
Sbjct: 348 KLIQKDVFLNIAGGIKIADPATDLAVISAVLASSLDIVIPPAVCMTGEVGLSGEIRPVSR 407
Query: 531 MEKRVSTVAKLGYRKCIVP 549
+E+R++ ++G+++ +VP
Sbjct: 408 IEQRITEARRIGFKEILVP 426
>gi|449918919|ref|ZP_21797630.1| DNA repair protein RadA [Streptococcus mutans 1SM1]
gi|449159905|gb|EMB63204.1| DNA repair protein RadA [Streptococcus mutans 1SM1]
Length = 466
Score = 343 bits (880), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 200/471 (42%), Positives = 282/471 (59%), Gaps = 26/471 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T +VC +CGY ++ G C C S + E E V+ + E+ +PV+L
Sbjct: 18 KTTFVCQECGYNSPKYLGRCPNCSSWSSFV-----EEIEVAEVKNARVSLTGEKTRPVKL 72
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
+V R+ + E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ +A
Sbjct: 73 NQVTSSQAT---RVKTNM---EEFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLA 126
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+ V YVSGEES EQI R++R+ E +LY+ T+++ I +++ + P L
Sbjct: 127 N------KGTVFYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQSIRAEIEKIQPDFL 180
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQTV ++ G + QV+E T+ L++ AK NI + GHVTK G +AGPR+LE
Sbjct: 181 IIDSIQTVMSPEISSVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTLAGPRMLE 240
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS++FL E+
Sbjct: 241 HMVDTVLYFEGERQHTFRILRAVKNRFGSTNEIGIFEMRSGGLVEVLNPSQVFLEERLDG 300
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
+ G A+ V M+G+R L E+QAL R G+ +R +I++VL K+ GL
Sbjct: 301 A---TGSAIVVTMEGTRPILAEVQALVTPTVFGNAKRTTTGLDFNRVSLIMAVLEKRCGL 357
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ +L GV L E A DLAV AI SS+ E P +IGEIGL GE+R V+R
Sbjct: 358 LLQNQDAYLKSAGGVRLDEPAIDLAVVVAIASSYKEKPTNPQECYIGEIGLTGEIRRVNR 417
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQ-MEFIGCKNLKEVINVVF 580
+E+R++ +KLG+ K VPK+ SL+ L Q ++ IG + EV+ VF
Sbjct: 418 IEQRLNEASKLGFTKIFVPKN---SLSGLTIPQGIQVIGVTTVSEVLKKVF 465
>gi|392429403|ref|YP_006470417.1| DNA repair protein RadA [Streptococcus intermedius JTH08]
gi|419776175|ref|ZP_14302098.1| DNA repair protein RadA [Streptococcus intermedius SK54]
gi|383846383|gb|EID83782.1| DNA repair protein RadA [Streptococcus intermedius SK54]
gi|391758552|dbj|BAM24169.1| DNA repair protein RadA [Streptococcus intermedius JTH08]
Length = 471
Score = 343 bits (880), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 199/471 (42%), Positives = 281/471 (59%), Gaps = 26/471 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T +VC +CGY ++ G C C S + + V T E+ +PV+L
Sbjct: 18 KTTFVCQECGYNSPKYLGRCPNCSSWSSFVEEVEVAEVKNARVSLTG-----EKTRPVKL 72
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
+V R+ + E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ +A
Sbjct: 73 NQVTSSQAT---RVKTNM---EEFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLA 126
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+ V YVSGEES EQI R++R+ E +LY+ T+++ I +++ + P L
Sbjct: 127 N------KGTVFYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQSIRAEIEKIQPDFL 180
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQTV ++ G + QV+E T+ L++ AK NI + GHVTK G +AGPR+LE
Sbjct: 181 IIDSIQTVMSPEISSVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTLAGPRMLE 240
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS++FL E+
Sbjct: 241 HMVDTVLYFEGERQHTFRILRAVKNRFGSTNEIGIFEMRSGGLVEVLNPSQVFLEERLDG 300
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
+ G A+ V M+G+R L E+QAL R G+ +R +I++VL K+ GL
Sbjct: 301 A---TGSAIVVTMEGTRPILAEVQALVTPTVFGNAKRTTTGLDFNRVSLIMAVLEKRCGL 357
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ +L GV L E A DLAVA AI SS+ E P +IGEIGL GE+R V+R
Sbjct: 358 LLQNQDAYLKSAGGVRLDEPAIDLAVAVAIASSYKEKPTNPQECYIGEIGLTGEIRRVNR 417
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQ-MEFIGCKNLKEVINVVF 580
+E+R++ +KLG+ K VPK+ SL+ L Q ++ +G + EV+ VF
Sbjct: 418 IEQRLNEASKLGFTKIFVPKN---SLSGLTIPQGIQIVGVTTVGEVLKKVF 465
>gi|295084627|emb|CBK66150.1| DNA replication and repair protein RadA [Bacteroides xylanisolvens
XB1A]
Length = 455
Score = 343 bits (880), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 186/470 (39%), Positives = 285/470 (60%), Gaps = 22/470 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T +VCS+CG +W G C +C G Y + P +R + ++ +P+ L
Sbjct: 5 KTVYVCSNCGQDSPKWVGKCPSC---GEWNTYVEEIVRKEPTNRRPVSGIETQKPKPLAL 61
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
++ + P + +E+ RVLGGGLVPGSLVLIGG+PG+GKSTL++Q +
Sbjct: 62 SDIEADDE------PRINMHDDELNRVLGGGLVPGSLVLIGGEPGIGKSTLVMQTVLHMP 115
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+ ++YVSGEES Q+ RADR+ + + + T +E I ++ +P +
Sbjct: 116 E-------KKILYVSGEESARQLKLRADRLSDTSSDCLIVCETSLEQIYVHIKNTNPDLV 168
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQT+ + S G + QV+EC++++LRFAK+T+ PVLL GH+ K G IAGP+VLE
Sbjct: 169 IIDSIQTISTESIESSPGSIAQVRECSASILRFAKETHTPVLLIGHINKEGSIAGPKVLE 228
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
HIVD VL EG++ YR+LRS+KNRFGST ELG++EM Q GL+ V+NPS++ LS+ H
Sbjct: 229 HIVDTVLQFEGDQHYMYRILRSIKNRFGSTAELGIYEMRQDGLRQVNNPSELLLSQDH-- 286
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
E ++G+A+A ++G R FLIE QAL S R G R +M+++VL K+ G
Sbjct: 287 -EGMSGVAIASAIEGIRPFLIETQALVSSAVYGNPQRSATGFDLRRMNMLLAVLEKRVGF 345
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
KL + +FLN+ G+ + + A DL V +AI SS ++ I + GEIGL GE+R V+R
Sbjct: 346 KLAQKDVFLNIAGGLKVNDPAIDLPVISAILSSNMDAAIEPEVCMAGEIGLSGEIRPVNR 405
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+E+R+ KLG+++ ++PK + + T ++E + + ++E +F
Sbjct: 406 IEQRIGEAEKLGFKRFLLPKYNLQGIDTTKL-KIELVPVRKVEEAFRALF 454
>gi|450125223|ref|ZP_21867562.1| DNA repair protein RadA [Streptococcus mutans U2A]
gi|449232796|gb|EMC31893.1| DNA repair protein RadA [Streptococcus mutans U2A]
Length = 466
Score = 343 bits (880), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 200/471 (42%), Positives = 283/471 (60%), Gaps = 26/471 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T +VC +CGY ++ G C C S + E E V+ + E+ +PV+L
Sbjct: 18 KTTFVCQECGYNSPKYLGRCPNCSSWSSFV-----EEIEVAEVKNARVSLTGEKTRPVKL 72
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
+V R+ + E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ +A
Sbjct: 73 NQVTSSQAT---RVKTNM---EEFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLA 126
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+ V YVSGEES EQI R++R+ E +LY+ T+++ I +++ + P L
Sbjct: 127 N------KGTVFYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQSIRAEIEKIQPDFL 180
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQTV ++ G + QV+E T+ L++ AK NI + GHVTK G +AGPR+LE
Sbjct: 181 IIDSIQTVMSPEISSVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTLAGPRMLE 240
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS++FL E+
Sbjct: 241 HMVDTVLYFEGERQHTFRILRAVKNRFGSTNEIGIFEMRSGGLVEVLNPSQVFLEERLDG 300
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
+ G A+ V M+G+R L E+QAL R G+ +R +I++VL K+ GL
Sbjct: 301 A---TGSAIVVTMEGTRPILAEVQALVTPTVFGNAKRTTTGLDFNRVSLIMAVLEKRCGL 357
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ +L GV L E A DLAVA AI SS+ E P +IGEIGL GE+R V+R
Sbjct: 358 LLQNQDAYLKSAGGVRLDEPAIDLAVAVAIASSYKEKPTNPQECYIGEIGLTGEIRRVNR 417
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQ-MEFIGCKNLKEVINVVF 580
+E+R++ +KLG+ K VP++ SL+ L Q ++ IG + EV+ VF
Sbjct: 418 IEQRLNEASKLGFTKIFVPQN---SLSGLTIPQGIQVIGVTTVSEVLKKVF 465
>gi|423069426|ref|ZP_17058213.1| DNA repair protein radA [Streptococcus intermedius F0395]
gi|355364866|gb|EHG12594.1| DNA repair protein radA [Streptococcus intermedius F0395]
Length = 472
Score = 343 bits (880), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 196/471 (41%), Positives = 277/471 (58%), Gaps = 26/471 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
++ +VC +C Y ++ G C C + + + V T +P ++ V
Sbjct: 24 KSTFVCQNCEYHSPKYLGRCPNCGTWSSFVEEVEVAEVKNARVSLTGEKTRPMKLAEVTS 83
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
++V + +D E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++
Sbjct: 84 IDVKRTKTDMD-----------EFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVST--- 129
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
L V+YVSGEES EQI RA+R+ E +LY+ T+++ I +++ + P L
Sbjct: 130 ---QLSHKGTVLYVSGEESAEQIKLRAERLGDIDSEFYLYAETNMQHIRAEIEKIKPDFL 186
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQT+ ++ G + QV+E T+ L++ AK NI + GH+TK G +AGPR LE
Sbjct: 187 IIDSIQTIMSPEISSVQGSVSQVREVTAELMQLAKTNNIATFIVGHMTKEGTLAGPRTLE 246
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS++FL E+
Sbjct: 247 HMVDTVLYFEGERQHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDG 306
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
+ G ++ V M+G+R L E+QAL R G+ +RA +I++VL K+AGL
Sbjct: 307 A---TGSSIVVTMEGTRPILAEVQALVTPTMFGNAKRTTAGLDFNRASLIMAVLEKRAGL 363
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ +L GV L E A DLAVA AI SS+ E P +IGEIGL GE+R V+R
Sbjct: 364 LLQNQDAYLKSAGGVRLDEPAIDLAVAVAIASSYKEKPTNPQECYIGEIGLTGEIRRVNR 423
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGF-EQMEFIGCKNLKEVINVVF 580
+E+R++ KLG+ K VPK+ SL L E+ E IG + EV+ VF
Sbjct: 424 IEQRINEAVKLGFTKIYVPKN---SLNGLNIPEKTEVIGVTTIGEVLKKVF 471
>gi|325285965|ref|YP_004261755.1| DNA repair protein RadA [Cellulophaga lytica DSM 7489]
gi|324321419|gb|ADY28884.1| DNA repair protein RadA [Cellulophaga lytica DSM 7489]
Length = 453
Score = 343 bits (880), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 185/449 (41%), Positives = 282/449 (62%), Gaps = 27/449 (6%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTW-LPQKPEEV--QP 169
+T + C +CG +W G C AC+ T+ + + + +W P +V +P
Sbjct: 5 KTAFFCQNCGTQYAKWAGQCGACKEWNTIVEEVIQKEE-----KSSWKTPSNTPKVATKP 59
Query: 170 VRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAA 229
+R+ E++ + + R+ L E RVLGGGLVPGSL L+GG+PG+GKSTLLLQ++
Sbjct: 60 LRVKEIST---EKELRLNTYDL---EFNRVLGGGLVPGSLTLLGGEPGIGKSTLLLQIS- 112
Query: 230 IIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSP 289
L P +YVSGEES +QI RADR+ + F+ + T ++I ++V+ + P
Sbjct: 113 -------LKLPYKTLYVSGEESQKQIKMRADRITTNNDTCFILTETKTQNIFKQVEAIEP 165
Query: 290 RALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPR 349
L+IDSIQT++ + +AG + Q++ECT+ L++FAK+TN PV+L GH+TK G IAGP+
Sbjct: 166 DILVIDSIQTLHSDYIESAAGSISQIRECTAELIKFAKETNTPVILIGHITKDGTIAGPK 225
Query: 350 VLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQ 409
+LEH+VD VL EG++ YR+LR++KNRFGST ELG++EM GL+ V+NPS+I +S+
Sbjct: 226 ILEHMVDTVLQFEGDRNYVYRILRALKNRFGSTAELGIYEMLGSGLREVNNPSEILISK- 284
Query: 410 HSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQ 467
+ E L+G A++ ++G R +IEIQAL + T R G A R +M+++VL K+
Sbjct: 285 --NDEGLSGTAISASIEGMRPLMIEIQALVSTAVYGTPQRSTTGFNAKRLNMLLAVLEKR 342
Query: 468 AGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRM 527
AG L +FLN+ G+++ + A DLAV AAI SS + IP G+ F E+GL GE+R
Sbjct: 343 AGFMLGAKDVFLNITGGISVDDPAIDLAVIAAILSSNSDIAIPKGVCFAAEVGLAGEIRP 402
Query: 528 VSRMEKRVSTVAKLGYRKCIVPKSAEKSL 556
+ R+++R+S KLG+ V K+ + +L
Sbjct: 403 IQRVDQRISEAEKLGFTAIFVSKNNKITL 431
>gi|304382475|ref|ZP_07364972.1| DNA repair protein RadA [Prevotella marshii DSM 16973]
gi|304336387|gb|EFM02626.1| DNA repair protein RadA [Prevotella marshii DSM 16973]
Length = 471
Score = 343 bits (880), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 189/484 (39%), Positives = 293/484 (60%), Gaps = 28/484 (5%)
Query: 106 RKKGKANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTW------ 159
+KK ++T +VCS+CG +W G C +C + K S + + T
Sbjct: 6 QKKVVKDKTIYVCSNCGQESLKWMGKCPSCGEWDSFKEMRLASSSKESAARHTAQSLGSA 65
Query: 160 LPQKPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVG 219
L Q +P+ L E++ + P + E+ RVLGGGLVPGS+VL+GG+PG+G
Sbjct: 66 LSQGSN--RPLSLQEISARDE------PRIDMNDAELNRVLGGGLVPGSIVLLGGEPGIG 117
Query: 220 KSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIA-TEELFLYSSTDIE 278
KSTL LQ + + ++YVSGEES Q+ RA+R+ + + + + T +E
Sbjct: 118 KSTLTLQTVLRLPERR-------ILYVSGEESAHQLKMRAERIAPSGSSDCMVLCETSLE 170
Query: 279 DIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGH 338
+I ++ + P ++IDSIQT+ + + S G + QV+EC SALLRFAK N+PV+L GH
Sbjct: 171 NIFSHIREIQPEIVVIDSIQTIATQQIDSSPGSIAQVRECASALLRFAKTGNVPVILIGH 230
Query: 339 VTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAV 398
+ K G +AGP++LEHIVD V+ EG++ YR+LRS+KNRFGST ELG++EM Q GL+ V
Sbjct: 231 INKEGSLAGPKILEHIVDTVIQFEGDQHHLYRILRSIKNRFGSTSELGIYEMRQAGLRPV 290
Query: 399 SNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASR 456
SNPS++ L+ H E L+G+A++ ++G R FL+E QAL S + T R G + R
Sbjct: 291 SNPSELLLTGDH---EGLSGIAISSAIEGVRPFLVETQALVSSAAYGTPQRSATGFEQRR 347
Query: 457 ADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFI 516
+M+++VL K+ G KL + +F+N+ G+ +T+ A DL+V A+ SS ++ PI G
Sbjct: 348 LNMLLAVLEKRVGFKLMQKDVFINIAGGLRVTDLAIDLSVITAVLSSNVDTPIETGWCMT 407
Query: 517 GEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVI 576
GE+GL GE+R VSR+E+R++ KLG+ I+PK + L + + ++E + ++E +
Sbjct: 408 GEVGLSGEVRPVSRIEQRIAEAEKLGFSHLILPKYNLQGLDSSKY-KIELHPVRKVEEAL 466
Query: 577 NVVF 580
V+F
Sbjct: 467 RVLF 470
>gi|213962482|ref|ZP_03390744.1| DNA repair protein RadA [Capnocytophaga sputigena Capno]
gi|213954808|gb|EEB66128.1| DNA repair protein RadA [Capnocytophaga sputigena Capno]
Length = 454
Score = 343 bits (880), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 190/476 (39%), Positives = 284/476 (59%), Gaps = 35/476 (7%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T + C +CG +W G C C+ T+ VVQ+ P E+ P++
Sbjct: 5 KTAYFCQNCGAQYSKWQGQCYTCKQWNTIVE---------EVVQKDTAPAWQEKESPIK- 54
Query: 173 LEVNKGMK-----QLD-WRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQ 226
NK K Q+D + P +E+ VLGGG+VPGS+ L+GG+PG+GKSTLLLQ
Sbjct: 55 ---NKAPKYIPISQIDTQQEPRLNSNNHELNNVLGGGIVPGSVTLLGGEPGIGKSTLLLQ 111
Query: 227 MAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQP 286
+A L P +YVSGEES +QI RADR+ + F+ + T ++I ++++
Sbjct: 112 IA--------LNLPYRTLYVSGEESEKQIKMRADRIPHKLDNCFILTETKTQNIFQQIKE 163
Query: 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIA 346
L P +IIDSIQT+ + SAG + Q++ECTS L++FAK T+ PV+L GH+TK G IA
Sbjct: 164 LLPEIVIIDSIQTLQSDYIEASAGSISQIRECTSELIKFAKTTHTPVILIGHITKDGQIA 223
Query: 347 GPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFL 406
GP++LEH+VD VL EG++ YR+LRS+KNRFGST ELG++EM GL+ V+NPS+I +
Sbjct: 224 GPKILEHMVDTVLQFEGDRNHVYRILRSLKNRFGSTSELGIYEMLSNGLREVNNPSEILI 283
Query: 407 SEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVL 464
S+ E ++G ++A ++G R +IEIQAL + T R G A R +M+++VL
Sbjct: 284 SK---TDETISGTSIAATLEGMRPLMIEIQALVSTAVYGTPQRSTTGFNAKRLNMLLAVL 340
Query: 465 MKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGE 524
K+AG +L +FLN+ G+ + + A DL VA AI SS + I + F GE+GLGGE
Sbjct: 341 EKRAGFRLGAKDVFLNITGGITIDDPATDLGVAMAILSSNEDIAIEKNVCFAGEVGLGGE 400
Query: 525 LRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+R V R+E+R++ KLG+ V K + +L +++ I +++ I +F
Sbjct: 401 IRPVQRVEQRITEAEKLGFNTIFVSKYNKIALKNT---KIKVITVAKIEDAIQELF 453
>gi|400290907|ref|ZP_10792934.1| DNA repair protein RadA [Streptococcus ratti FA-1 = DSM 20564]
gi|399921698|gb|EJN94515.1| DNA repair protein RadA [Streptococcus ratti FA-1 = DSM 20564]
Length = 466
Score = 343 bits (880), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 193/471 (40%), Positives = 277/471 (58%), Gaps = 24/471 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T +VC +CGY ++ G C C S + + + T +P ++ V
Sbjct: 18 KTTFVCQECGYNSPKYLGRCPNCSSWSSFVEEVEVAEVKNARISLTGEKTRPVKLNQVTS 77
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
+V + ++ E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ +A
Sbjct: 78 SQVTRVKTNME-----------EFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLA 126
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+ V+YVSGEES EQI R++R+ E +LY+ T+++ I +++ + P L
Sbjct: 127 N------QGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQSIRAEIEKIQPDFL 180
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQTV ++ G + QV+E T+ L++ AK NI + GHVTK G +AGPR+LE
Sbjct: 181 IIDSIQTVMSPEISSVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTLAGPRMLE 240
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS++FL E+
Sbjct: 241 HMVDTVLYFEGERQHTFRILRAVKNRFGSTNEIGIFEMRSAGLVEVLNPSQVFLEERLDG 300
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
+ G A+ V M+G+R L E+QAL R G+ +R +I++VL K+ G
Sbjct: 301 A---TGSAIVVTMEGTRPILAEVQALVTPTVFGNAKRTTTGLDFNRVSLIMAVLEKRCGF 357
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ +L GV L E A DLAVA AI SS+ E P +IGEIGL GE+R V+R
Sbjct: 358 LLQNQDAYLKSAGGVRLDEPAIDLAVAVAIASSYKEKPTNPQECYIGEIGLTGEIRRVNR 417
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVFT 581
+E+R++ KLG+ K VPK+A L + ++ IG + EV+ VF+
Sbjct: 418 IEQRINEAGKLGFTKIFVPKNALSGLT--APKGIQVIGVTTVGEVLKKVFS 466
>gi|335039210|ref|ZP_08532388.1| DNA repair protein RadA [Caldalkalibacillus thermarum TA2.A1]
gi|334180908|gb|EGL83495.1| DNA repair protein RadA [Caldalkalibacillus thermarum TA2.A1]
Length = 412
Score = 343 bits (879), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 185/391 (47%), Positives = 261/391 (66%), Gaps = 18/391 (4%)
Query: 195 EVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQ 254
E RVLGGG+VPGSLVL GGDPG+GKSTLLLQ++ I+++ + V+YVSGEES++Q
Sbjct: 30 EFDRVLGGGVVPGSLVLFGGDPGIGKSTLLLQISGILSE-----QGHRVLYVSGEESLKQ 84
Query: 255 IGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQ 314
I RADR+ I + ELF+ + T I++I ++ P+ +I+DSIQTVY V+ + G + Q
Sbjct: 85 IKMRADRLGIESAELFILTETHIDEIERQIDQAEPKVVILDSIQTVYHPEVSSTPGSVAQ 144
Query: 315 VKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRS 374
V+ECT+ L+R AK I + + GHVTK G IAGP++LEH+VDAV+Y EGE+ +YR+LR+
Sbjct: 145 VRECTAVLMRVAKSKGIAIFVVGHVTKEGAIAGPKILEHMVDAVIYFEGERHHTYRILRA 204
Query: 375 VKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIE 434
VKNRFGST+E+G+F+M + GL V NPS++FL E+ + AG V M+G+R L+E
Sbjct: 205 VKNRFGSTNEIGIFDMQESGLVEVVNPSELFLEERAHGA---AGSIVVASMEGTRPVLVE 261
Query: 435 IQALCVSGS--TVSRHVNGIQASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAG 492
+QAL S T R G+ R +I++VL K+ GL LQ ++NV GV L E A
Sbjct: 262 LQALVTPTSFGTPRRTATGVDHHRVSLIMAVLEKRVGLLLQNQDAYINVAGGVKLNEPAL 321
Query: 493 DLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSA 552
DL +A +I SSF E P IGE+GL GE+R VSR+E+R++ KLG+++ I+P
Sbjct: 322 DLGMAISIASSFREKPTSPYDVVIGEVGLTGEVRGVSRIEQRLTEARKLGFKRAIIPYK- 380
Query: 553 EKSLATLGF---EQMEFIGCKNLKEVINVVF 580
TLG+ E +E IG ++++E I VV
Sbjct: 381 ----NTLGWELPEGIEVIGVQSVQEAIQVVL 407
>gi|37521975|ref|NP_925352.1| DNA repair protein RadA [Gloeobacter violaceus PCC 7421]
gi|35212974|dbj|BAC90347.1| radA [Gloeobacter violaceus PCC 7421]
Length = 480
Score = 343 bits (879), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 192/453 (42%), Positives = 285/453 (62%), Gaps = 22/453 (4%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVR 171
R+ + C++CGY + +W G C C++ + + + P R+ P P V
Sbjct: 4 TRSQFTCTECGYENVRWLGRCPGCDAWNSFVEETVSPT---PAAHRSPTPAAPRPRAAVA 60
Query: 172 LLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAII 231
L +++ R+P SG FG E+ RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ A
Sbjct: 61 LDAIDQSQHS---RVP-SG-FG-ELDRVLGGGVVPGSLVLIGGDPGIGKSTLLLQTAC-- 112
Query: 232 ADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRA 291
L + V+YV+ EES +Q+ RA+R+ +A LFL + T++E ++ +++ L P
Sbjct: 113 ----RLSQAQTVLYVAAEESAQQVKLRAERLGVAAPGLFLLAETELEAVLSELESLKPGI 168
Query: 292 LIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVL 351
++DSIQ VYL + +AG + QV+ECT++L+R AK+T I + + GHVTK G +AGP+VL
Sbjct: 169 AVVDSIQAVYLGALTAAAGSVSQVRECTASLMRLAKRTRITLFIVGHVTKEGSLAGPKVL 228
Query: 352 EHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHS 411
EH+VD VLY EG++F S+RLLRSVKNRFG+T E+GVFEM + GL V NPS++FL+ S
Sbjct: 229 EHLVDTVLYFEGDRFQSHRLLRSVKNRFGATHEIGVFEMGERGLAEVENPSELFLT---S 285
Query: 412 DSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVLMKQAG 469
E G A V +G+R ++E+QAL S + R GI+ +R I++VL K+ G
Sbjct: 286 RDEPAPGTATIVACEGTRPLVVELQALVSPTSYGSPRRTATGIEYNRFLQILAVLEKRVG 345
Query: 470 LKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVS 529
+ L + ++ V G+ ++E A DL VA A+ +SF + + +GE+GLGG++R VS
Sbjct: 346 IPLSKLDAYVASVGGLDVSEPAADLGVAVAVAASFRDRIVDPHTVLLGEVGLGGQVRPVS 405
Query: 530 RMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFE 562
++E R+ KLGYR+ IVP+ + ++A G E
Sbjct: 406 QLELRLKEAFKLGYRRAIVPRGS--AIAAPGME 436
>gi|366089453|ref|ZP_09455926.1| DNA repair protein RadA [Lactobacillus acidipiscis KCTC 13900]
Length = 457
Score = 343 bits (879), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 195/475 (41%), Positives = 283/475 (59%), Gaps = 30/475 (6%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQ---RTWLPQKPEEVQP 169
+ +VC +CGY+ ++ G C C T+ + + V T KP+ ++
Sbjct: 5 KIKYVCQNCGYSSPRYLGRCPNCGQWNTLVEEVERKEPKASVSSFSGGTATSSKPQLLKD 64
Query: 170 VRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAA 229
V L + + Q+D E+ RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++
Sbjct: 65 VSLKQAPRVQTQID-----------ELNRVLGGGIVPGSLVLIGGDPGIGKSTLLLQVSG 113
Query: 230 IIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSP 289
+A V+YVSGEES QI RADR+ +++++ +LY TD+ I + L P
Sbjct: 114 QLAQTG-----GKVLYVSGEESANQIKMRADRLSVSSDDFYLYPETDMGAIRANIDSLKP 168
Query: 290 RALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPR 349
++IDS+QT+ ++ + G + Q++E T+ L+R AK I + + GHVTK G IAGP+
Sbjct: 169 DYVVIDSVQTMQEPEMSSAVGSVSQIREVTADLMRLAKGQGITIFVVGHVTKGGAIAGPK 228
Query: 350 VLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQ 409
+LEH+VD VLY EG+ SYR+LR+VKNRFGST+E+GVFEM + GL VSNPS+IFL E+
Sbjct: 229 ILEHMVDTVLYFEGDLHHSYRILRAVKNRFGSTNEIGVFEMREGGLYEVSNPSRIFLEER 288
Query: 410 HSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMKQ 467
+ G AV V ++G+R ++EIQAL + R +G+ +R +I++VL K+
Sbjct: 289 LQGA---TGSAVVVSLEGTRPIMVEIQALVTPTAFGNAKRTTSGLNQNRVSLIMAVLEKR 345
Query: 468 AGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRM 527
AGL LQ +L GV L E A DLA+A +I SS+ E FIGE+GL GE+R
Sbjct: 346 AGLMLQNQDAYLKAAGGVKLDEPAIDLALAISIASSYREKETVATDCFIGEVGLTGEIRR 405
Query: 528 VSRMEKRVSTVAKLGYRKCIVPKS--AEKSLATLGFEQMEFIGCKNLKEVINVVF 580
VS +E RV KLG+++ I+P++ +E L E +E G K L + ++ F
Sbjct: 406 VSDIETRVREAQKLGFKQIIIPQNNLSEADLP----ENIEVRGVKTLNQALHFAF 456
>gi|354806614|ref|ZP_09040095.1| DNA repair protein RadA [Lactobacillus curvatus CRL 705]
gi|354514798|gb|EHE86764.1| DNA repair protein RadA [Lactobacillus curvatus CRL 705]
Length = 454
Score = 343 bits (879), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 194/473 (41%), Positives = 288/473 (60%), Gaps = 29/473 (6%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T +VC +CGY+ ++ G C C + M E ++ ++ +P ++
Sbjct: 5 KTQFVCQNCGYSSPRFLGRCPNCGAWNQM----VEEREQPAASAKSSFTISGRATEPEQI 60
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
VN Q + RI NE+ RVLGGG+VPGSL+LIGGDPG+GKSTLLLQ++ +
Sbjct: 61 STVNI---QKEPRIKTEL---NELNRVLGGGVVPGSLILIGGDPGIGKSTLLLQVSGQLE 114
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
V ++YVSGEESV QI RA+R+ + ++L+LY TD+ I +++ + P +
Sbjct: 115 KV------GKILYVSGEESVSQIKMRANRLDVNGDQLYLYPETDMGKIRHQIETMKPDFV 168
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
+IDSIQT+ V + G + QV++ T+ L+R AK I + + GHVTK G IAGP++LE
Sbjct: 169 VIDSIQTMSEPEVISAVGSVSQVRQVTAELMRIAKTNQITIFVVGHVTKEGAIAGPKILE 228
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EG+ +YR+LRSVKNRFGST+E+G+FEM + GL+ V+NPS+IFL E+ +
Sbjct: 229 HMVDTVLYFEGDTHHTYRILRSVKNRFGSTNEIGIFEMREAGLKEVANPSEIFLEERLAG 288
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
+ G AV V M+G+R L+E+Q L R +G+ +R +I++VL K+A L
Sbjct: 289 A---TGSAVVVSMEGTRPILVELQTLITPTLFGNAKRTSSGLDHNRVSLIMAVLEKRASL 345
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
L +L GV L E A DLA+A +I SS+ + IP F+GEIGL GE+R V+R
Sbjct: 346 MLSNQDAYLKATGGVKLDEPAIDLAMAVSIASSYRDKEIPPTDCFVGEIGLTGEIRRVNR 405
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFE---QMEFIGCKNLKEVINVVF 580
+E+RVS AKLG+++ VPK+ + G++ ++ IG + E + VF
Sbjct: 406 IEQRVSEAAKLGFKRIYVPKNNLQ-----GWDAPTDIQVIGVTTIAETLKKVF 453
>gi|291523678|emb|CBK81971.1| Predicted ATP-dependent serine protease [Coprococcus catus GD/7]
Length = 461
Score = 343 bits (879), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 193/473 (40%), Positives = 288/473 (60%), Gaps = 31/473 (6%)
Query: 116 WVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLP-----QKPEEVQPV 170
+ C +CGY +W G C AC++ T E P + + + + + +PV
Sbjct: 8 FFCQECGYESAKWLGQCPACKAWNTFV--------EEPTIGKGSMASGGIRHQAKASEPV 59
Query: 171 RLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAI 230
L V+ D + +G+ +E RVLGGG+VPGSLVL+GGDPG+GKSTLLLQM+
Sbjct: 60 LLSSVHSS----DEKRRSTGI--SEFDRVLGGGIVPGSLVLVGGDPGIGKSTLLLQMSRC 113
Query: 231 IADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPR 290
+++ + VYVSGEES++QI RADR+ + +L + T+++ I E + P
Sbjct: 114 LSE-----QSCRTVYVSGEESLQQIRLRADRLGVFKNDLAMLCETNLDVIQETILKYKPE 168
Query: 291 ALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRV 350
+IIDSIQT+Y ++ AG + QV+E TS L++ AK+ NI + + GHVTK G +AGPRV
Sbjct: 169 VVIIDSIQTMYREAISSGAGSVSQVREATSVLMQLAKRENIAIFIVGHVTKEGVVAGPRV 228
Query: 351 LEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQH 410
LEH+VD VLY EG++ +SYRLLR+VKNRFGST+E+GVFEM GL V NPS+ LS +
Sbjct: 229 LEHMVDTVLYFEGDRHASYRLLRAVKNRFGSTNEIGVFEMCSEGLTEVKNPSEFMLSGR- 287
Query: 411 SDSEFLAGLAVAVIMDGSRSFLIEIQAL-CVSGSTVSRHV-NGIQASRADMIISVLMKQA 468
E AG VA M+G+R ++E+QAL C + + R G +R +++++VL K+
Sbjct: 288 --PEGTAGSVVACAMEGTRPLMLEVQALVCQTNFQIPRRTAAGTDYNRVNLLLAVLEKRL 345
Query: 469 GLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMV 528
GLKL ++N+ G+ L E A DLA+ AA+ SS+ + + GE+GL GE+R V
Sbjct: 346 GLKLAGCDAYINLAGGMRLNEPAIDLAIVAAVISSYRNAAVESDTMIFGEVGLTGEVRAV 405
Query: 529 SRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVFT 581
S+ E+RV KLG++ C +P+S K + + + IG +N+K++ + + T
Sbjct: 406 SQAEQRVREAEKLGFKVCCIPQSNMKYIRS--NTGIRVIGIRNVKDLYDFICT 456
>gi|421489605|ref|ZP_15936982.1| DNA repair protein RadA [Streptococcus anginosus SK1138]
gi|400374672|gb|EJP27588.1| DNA repair protein RadA [Streptococcus anginosus SK1138]
Length = 465
Score = 343 bits (879), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 196/471 (41%), Positives = 276/471 (58%), Gaps = 26/471 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+ +VC +C Y ++ G C C + + + V T +P ++ V
Sbjct: 17 KATFVCQNCEYHSPKYLGRCPNCGAWSSFVEEVEVTDVKNARVSLTGEKSRPMKLAEVTS 76
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
+ VN+ ++ E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++
Sbjct: 77 INVNRTKTDME-----------EFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVST--- 122
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
L V+YVSGEES EQI RA+R+ E +LY+ T+++ I +++ + P L
Sbjct: 123 ---QLSHKGTVLYVSGEESAEQIKLRAERLGDIDSEFYLYAETNMQSIRAEIEKIKPDFL 179
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQT+ ++ G + QV+E T+ L++ AK NI + GH+TK G +AGPR LE
Sbjct: 180 IIDSIQTILSPEISSVQGSVSQVREVTAELMQLAKTNNIATFIVGHMTKEGTLAGPRTLE 239
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS++FL E+
Sbjct: 240 HMVDTVLYFEGERQHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDG 299
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
+ G ++ V M+G+R L E+QAL R G+ +RA +I++VL K+AGL
Sbjct: 300 A---TGSSIVVTMEGTRPILAEVQALVTPTMFGNAKRTTTGLDFNRASLIMAVLEKRAGL 356
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ +L GV L E A DLAVA AI SS+ + P FIGEIGL GE+R V+R
Sbjct: 357 LLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDLPTNPQECFIGEIGLTGEIRRVNR 416
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGF-EQMEFIGCKNLKEVINVVF 580
+E+R++ AKLG+ K PK+ SL L E +E IG + EV+ VF
Sbjct: 417 IEQRINEAAKLGFTKVYAPKN---SLNGLNIPETIEVIGVTTIGEVLKKVF 464
>gi|387786825|ref|YP_006251921.1| putative DNA repair protein [Streptococcus mutans LJ23]
gi|379133226|dbj|BAL69978.1| putative DNA repair protein [Streptococcus mutans LJ23]
Length = 466
Score = 343 bits (879), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 199/471 (42%), Positives = 283/471 (60%), Gaps = 26/471 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T +VC +CGY ++ G C C S + E E V+ + E+ +PV+L
Sbjct: 18 KTTFVCQECGYNSPKYLGRCPNCSSWSSFV-----EEIEVAEVKNARVSLTGEKTRPVKL 72
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
+V R+ + E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ +A
Sbjct: 73 NQVTSSQAT---RVKTNM---EEFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLA 126
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+ V Y+SGEES EQI R++R+ E +LY+ T+++ I +++ + P L
Sbjct: 127 N------KGTVFYISGEESAEQIKLRSERLGDIDNEFYLYAETNMQSIRAEIEKIQPDFL 180
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQTV ++ G + QV+E T+ L++ AK NI + GHVTK G +AGPR+LE
Sbjct: 181 IIDSIQTVMSPEISSVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTLAGPRMLE 240
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS++FL E+
Sbjct: 241 HMVDTVLYFEGERQHTFRILRAVKNRFGSTNEIGIFEMRSGGLVEVLNPSQVFLEERLDG 300
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
+ G A+ V M+G+R L E+QAL R G+ +R +I++VL K+ GL
Sbjct: 301 A---TGSAIVVTMEGTRPILAEVQALVTPTVFGNAKRTTTGLDFNRVSLIMAVLEKRCGL 357
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ +L GV L E A DLAVA AI SS+ E P +IGEIGL GE+R V+R
Sbjct: 358 LLQNQDAYLKSAGGVRLDEPAIDLAVAVAIASSYKEKPTNPQECYIGEIGLTGEIRRVNR 417
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQ-MEFIGCKNLKEVINVVF 580
+E+R++ +KLG+ K VP++ SL+ L Q ++ IG + EV+ VF
Sbjct: 418 IEQRLNEASKLGFTKIFVPQN---SLSGLTIPQGIQVIGVTTVSEVLKKVF 465
>gi|270294631|ref|ZP_06200833.1| DNA repair protein RadA [Bacteroides sp. D20]
gi|423305127|ref|ZP_17283126.1| DNA repair protein RadA [Bacteroides uniformis CL03T00C23]
gi|423310952|ref|ZP_17288921.1| DNA repair protein RadA [Bacteroides uniformis CL03T12C37]
gi|270276098|gb|EFA21958.1| DNA repair protein RadA [Bacteroides sp. D20]
gi|392679984|gb|EIY73358.1| DNA repair protein RadA [Bacteroides uniformis CL03T12C37]
gi|392682626|gb|EIY75970.1| DNA repair protein RadA [Bacteroides uniformis CL03T00C23]
Length = 455
Score = 343 bits (879), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 193/470 (41%), Positives = 283/470 (60%), Gaps = 22/470 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T +VCS+CG +W G C +C G Y + V +R + + +P+ L
Sbjct: 5 KTVYVCSNCGQDSPKWVGKCPSC---GMWNTYVEEVVRKEVVNKRPVSGIETAKAKPITL 61
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
E+ + P L E+ RVLGGGLV GSLVLIGG+PG+GKSTL+LQ I
Sbjct: 62 HEIVADDE------PRIDLHDAELNRVLGGGLVQGSLVLIGGEPGIGKSTLVLQTVLRIP 115
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+ ++YVSGEES Q+ RADR+ A+ + + T +E I ++ + P +
Sbjct: 116 E-------KRILYVSGEESTRQLKLRADRLTSASSDCLIVCETSLEQIYVHIKNIRPDIV 168
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQT+ + S G + QV+EC++++LRFAK+T+ V+L GH+ K G IAGP+VLE
Sbjct: 169 IIDSIQTISTETLESSPGSIAQVRECSASILRFAKETHTAVILIGHINKEGSIAGPKVLE 228
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
HIVD VL EG++ YR+LRS+KNRFGST ELG++EM Q GL+ VSNPS++ LS+ H
Sbjct: 229 HIVDTVLQFEGDQHYMYRILRSIKNRFGSTAELGIYEMRQDGLRQVSNPSELLLSQDH-- 286
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
E ++G+A+A ++G R FLIE QAL S R G R +M+++VL K+ G
Sbjct: 287 -EGMSGIAIASAIEGIRPFLIETQALVSSAVYGNPQRSATGFDIRRMNMLLAVLEKRVGF 345
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
KL + +FLN+ G+ + + A DLAV ++I SS ++ I + GEIGL GE+R V+R
Sbjct: 346 KLAQKDVFLNIAGGLKVNDPAIDLAVISSILSSNMDTAIEPEVCMAGEIGLSGEIRPVNR 405
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+E+R+ KLG+++ I+PK + L T +ME I + ++E +F
Sbjct: 406 IEQRIGEAEKLGFKRFILPKYNMQGLNTKKI-KMELIPVRKVEEAFRALF 454
>gi|414161189|ref|ZP_11417450.1| DNA repair protein RadA [Staphylococcus simulans ACS-120-V-Sch1]
gi|410876451|gb|EKS24357.1| DNA repair protein RadA [Staphylococcus simulans ACS-120-V-Sch1]
Length = 456
Score = 343 bits (879), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 196/475 (41%), Positives = 288/475 (60%), Gaps = 39/475 (8%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRAC------ESVGTMKRYSAGESDEGPVVQRTWLPQKPEE 166
+ + C CGY +W G C C E V T K +G RT
Sbjct: 5 KVTFECMACGYQSPKWMGKCPNCGAWNQMEEVMTQKEAPSGRG------MRT-------R 51
Query: 167 VQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQ 226
Q ++ ++N + RI S E RVLGGG+V GSLVLIGGDPG+GKSTLLLQ
Sbjct: 52 EQTAKVTKLNDVQHESTPRIHTSS---REFDRVLGGGIVQGSLVLIGGDPGIGKSTLLLQ 108
Query: 227 MAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQP 286
+ + L + V+Y++GEES+ Q RADR+ + +L +++ TD+E I E V+
Sbjct: 109 ICSA------LSQNKKVLYITGEESLNQTKLRADRLEEDSSQLNVFAETDLEVIKEAVKQ 162
Query: 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIA 346
P +++DSIQTVY ++ + G + QV+E T L+ AK+ NI + GHVTK G IA
Sbjct: 163 TQPDLVVVDSIQTVYHPEISSAPGSVSQVRESTQILMGIAKQMNIATFIVGHVTKEGQIA 222
Query: 347 GPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFL 406
GPR+LEH+VD VLY EG++ +YR+LR+VKNRFGST+E+G+FEM GL+ V NPS++FL
Sbjct: 223 GPRLLEHMVDTVLYFEGDEHHAYRILRAVKNRFGSTNEMGIFEMKHSGLKGVKNPSEMFL 282
Query: 407 SEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVS---RHVNGIQASRADMIISV 463
E+ ++ +AG + M+G+R LIE+QAL V+ +T + R GI +R +++++V
Sbjct: 283 EERSTN---VAGSTIVPTMEGTRPLLIEVQAL-VTPTTFNNPRRMATGIDHNRLNLLMAV 338
Query: 464 LMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGG 523
L K+ LQ+ ++ V GV LTE A DLA+ AA+ SSF + PI F+GE+GL G
Sbjct: 339 LEKKESYLLQQQDAYVKVAGGVRLTEPAVDLAIIAAVASSFKDQPINGMDCFVGEVGLTG 398
Query: 524 ELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGF-EQMEFIGCKNLKEVIN 577
E+R VSR+E+RV AKLG+++ I+PK+ ++ F + ++ IG ++ E +N
Sbjct: 399 EVRRVSRIEQRVQEAAKLGFKRVIIPKT---NIGGWDFPDNIQVIGVTSVHEALN 450
>gi|262406675|ref|ZP_06083224.1| DNA repair protein RadA [Bacteroides sp. 2_1_22]
gi|294646073|ref|ZP_06723738.1| DNA repair protein RadA [Bacteroides ovatus SD CC 2a]
gi|294810496|ref|ZP_06769149.1| DNA repair protein RadA [Bacteroides xylanisolvens SD CC 1b]
gi|298483148|ref|ZP_07001328.1| DNA repair protein RadA [Bacteroides sp. D22]
gi|345508676|ref|ZP_08788301.1| DNA repair protein RadA [Bacteroides sp. D1]
gi|229446538|gb|EEO52329.1| DNA repair protein RadA [Bacteroides sp. D1]
gi|262355378|gb|EEZ04469.1| DNA repair protein RadA [Bacteroides sp. 2_1_22]
gi|292638644|gb|EFF56997.1| DNA repair protein RadA [Bacteroides ovatus SD CC 2a]
gi|294442260|gb|EFG11074.1| DNA repair protein RadA [Bacteroides xylanisolvens SD CC 1b]
gi|298270665|gb|EFI12246.1| DNA repair protein RadA [Bacteroides sp. D22]
Length = 455
Score = 343 bits (879), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 186/470 (39%), Positives = 285/470 (60%), Gaps = 22/470 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T +VCS+CG +W G C +C G Y + P +R + ++ +P+ L
Sbjct: 5 KTVYVCSNCGQDSPKWVGKCPSC---GEWNTYVEEIVRKEPTNRRPVSGIETQKPKPLAL 61
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
++ + P + +E+ RVLGGGLVPGSLVLIGG+PG+GKSTL++Q +
Sbjct: 62 SDIEADDE------PRINMHDDELNRVLGGGLVPGSLVLIGGEPGIGKSTLVMQTVLHMP 115
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+ ++YVSGEES Q+ RADR+ + + + T +E I ++ +P +
Sbjct: 116 E-------KKILYVSGEESARQLKLRADRLSDTSSDCLIVCETSLEQIYVHIKNTNPDLV 168
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQT+ + S G + QV+EC++++LRFAK+T+ PVLL GH+ K G IAGP+VLE
Sbjct: 169 IIDSIQTISTESIESSPGSIAQVRECSASILRFAKETHTPVLLIGHINKEGSIAGPKVLE 228
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
HIVD VL EG++ YR+LRS+KNRFGST ELG++EM Q GL+ V+NPS++ LS+ H
Sbjct: 229 HIVDTVLQFEGDQHYMYRILRSIKNRFGSTAELGIYEMRQDGLRQVNNPSELLLSQDH-- 286
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
E ++G+A+A ++G R FLIE QAL S R G R +M+++VL K+ G
Sbjct: 287 -EGMSGVAIASAIEGIRPFLIETQALVSSAVYGNPQRSATGFDLRRMNMLLAVLEKRVGF 345
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
KL + +FLN+ G+ + + A DL V +AI SS ++ I + GEIGL GE+R V+R
Sbjct: 346 KLAQKDVFLNIAGGLKVNDPAIDLPVISAILSSNMDAAIEPEVCMAGEIGLSGEIRPVNR 405
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+E+R+ KLG+++ ++PK + + T ++E + + ++E +F
Sbjct: 406 IEQRIGEAEKLGFKRFLLPKYNLQGIDTKKL-KIELVPVRKVEEAFRALF 454
>gi|422808349|ref|ZP_16856760.1| DNA repair protein RadA [Listeria monocytogenes FSL J1-208]
gi|378753383|gb|EHY63967.1| DNA repair protein RadA [Listeria monocytogenes FSL J1-208]
Length = 423
Score = 343 bits (879), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 178/393 (45%), Positives = 263/393 (66%), Gaps = 18/393 (4%)
Query: 163 KPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKST 222
+P + P+ +E ++ K+++ +P E+ RVLGGG+VPGS+VL+GGDPG+GKST
Sbjct: 20 EPSKATPITQIE-SETEKRVETNMP-------ELNRVLGGGVVPGSMVLVGGDPGIGKST 71
Query: 223 LLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVE 282
LLLQ++A + + V+Y+SGEES++Q RA+R+ ++ + L++Y+ T++E + E
Sbjct: 72 LLLQVSAQLTLTN-----KKVLYISGEESIKQTKLRAERLQVSGDNLYVYAETNLEAVQE 126
Query: 283 KVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKS 342
+ + P ++IDSIQTVY V +AG + QV+ECT+AL+R AK NI + + GHVTK
Sbjct: 127 TIDFVKPDFVVIDSIQTVYHPDVTSAAGSVSQVRECTAALMRIAKMQNIAIFIVGHVTKE 186
Query: 343 GDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPS 402
G IAGPR+LEH+VD VLY EGE+ +YR+LR+VKNRFGST+E+G+FEM +GL V+NPS
Sbjct: 187 GAIAGPRLLEHMVDTVLYFEGERHHAYRILRAVKNRFGSTNEMGIFEMRDVGLVEVANPS 246
Query: 403 KIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMI 460
++FL E+ E +G V M+G+R L+EIQAL R GI ++ +I
Sbjct: 247 EVFLEERL---EGASGSTVVASMEGTRPVLVEIQALVSPTMFGNAKRMATGIDYNKVSLI 303
Query: 461 ISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIG 520
++VL K+ GL LQ +L GV L E A DLAVA ++ SS+ + P + FIGE+G
Sbjct: 304 MAVLEKRVGLMLQNQDAYLKAAGGVKLDEPAVDLAVAVSVASSYRDKPTRSTDCFIGELG 363
Query: 521 LGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAE 553
L GE+R V+R+E+RV AKLG+++ +PK+ E
Sbjct: 364 LTGEIRRVARIEQRVQEAAKLGFKRIFIPKNNE 396
>gi|449953988|ref|ZP_21809184.1| DNA repair protein RadA [Streptococcus mutans 4VF1]
gi|449171286|gb|EMB73953.1| DNA repair protein RadA [Streptococcus mutans 4VF1]
Length = 466
Score = 343 bits (879), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 200/471 (42%), Positives = 282/471 (59%), Gaps = 26/471 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T +VC +CGY ++ G C C S + E E V+ + E+ +PV+L
Sbjct: 18 KTTFVCQECGYNSPKYLGRCPNCSSWSSFV-----EEIEVAEVKNARVSLTGEKTRPVKL 72
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
+V R+ + E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ +A
Sbjct: 73 NQVTSSQAT---RVKTNM---EEFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLA 126
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+ V YVSGEES EQI R++R+ E +LY+ T+++ I +++ + P L
Sbjct: 127 N------KGTVFYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQSIRAEIEKIQPDFL 180
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQTV ++ G + QV+E T+ L++ AK NI + GHVTK G +AGPR+LE
Sbjct: 181 IIDSIQTVMSPEISSVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTLAGPRMLE 240
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS++FL E+
Sbjct: 241 HMVDTVLYFEGERQHTFRILRAVKNRFGSTNEIGIFEMRSGGLVEVLNPSQVFLEERLDG 300
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
+ G A+ V M+G+R L E+QAL R G+ +R +I++VL K+ GL
Sbjct: 301 A---TGSAIVVTMEGTRPILAEVQALVTPTVFGNAKRTTTGLDFNRVSLIMAVLEKRCGL 357
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ +L GV L E A DLAVA AI SS+ E P +IGEIGL GE+R V+R
Sbjct: 358 LLQNQDAYLKSAGGVRLDEPAIDLAVAVAIASSYKEKPTIPQECYIGEIGLTGEIRRVNR 417
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQ-MEFIGCKNLKEVINVVF 580
+E+R++ +KLG+ K VPK+ L+ L Q ++ IG + EV+ VF
Sbjct: 418 IEQRLNEASKLGFTKIFVPKNC---LSGLTIPQGIQVIGVTTVSEVLKKVF 465
>gi|444910519|ref|ZP_21230703.1| DNA repair protein RadA [Cystobacter fuscus DSM 2262]
gi|444719138|gb|ELW59937.1| DNA repair protein RadA [Cystobacter fuscus DSM 2262]
Length = 453
Score = 342 bits (878), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 189/470 (40%), Positives = 282/470 (60%), Gaps = 24/470 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T++ C CGY +W G C C + ++ + + DE +R +PVRL
Sbjct: 5 KTHYACQACGYQSAKWLGKCPDCGAWSSLVEETETKVDE----KRPAWGASGGASKPVRL 60
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
EV+ +Q +G+ E RVLGGG+V GSLVL+GGDPG+GKSTLLL A
Sbjct: 61 REVSGEQEQRRH----TGI--AEFDRVLGGGVVDGSLVLLGGDPGIGKSTLLL------A 108
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+ LG PV+YVSGEES+ Q RA+R+ + E + L++ TD E ++ + L PRAL
Sbjct: 109 ALDRLGHAGPVLYVSGEESLRQTKMRAERLRVEGESIHLFAETDAERVLSVAESLKPRAL 168
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
++DSIQT+YL + + G + QV+E + FAK++ +P L GHVTK G IAGPRVLE
Sbjct: 169 VVDSIQTMYLPELGSAPGSISQVREVAGRFMAFAKRSGVPTFLVGHVTKEGSIAGPRVLE 228
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EGE+ +R+LR+ KNRFGST+E+GVFEM GL V++PS +FL+E+ +
Sbjct: 229 HMVDTVLYFEGERGHPFRILRAHKNRFGSTNEIGVFEMKGAGLVEVADPSALFLAERPAG 288
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
AG V ++G+R L+E+QAL T R G+ +R ++ +VL K+ +
Sbjct: 289 K---AGSVVTCTLNGTRPLLVEVQALVAPTGYGTARRTAIGVDGNRVALLAAVLEKKEDI 345
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
L +F+NV G+ L+E A DLAV AA+ SS P+ +GE+GL GE+R V +
Sbjct: 346 PLVGCDLFVNVAGGMQLSEPACDLAVCAALVSSLQNRPLEAHTLVLGEVGLAGEVRAVGQ 405
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+E R++ AK+G+++ ++PK + + L ++E +G + L E + +F
Sbjct: 406 VEPRLAEAAKMGFQRAVIPKGSARRLED---SKLEVVGVETLSEALGAMF 452
>gi|86608979|ref|YP_477741.1| DNA repair protein RadA [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86557521|gb|ABD02478.1| DNA repair protein RadA [Synechococcus sp. JA-2-3B'a(2-13)]
Length = 464
Score = 342 bits (878), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 187/447 (41%), Positives = 275/447 (61%), Gaps = 26/447 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQK------PEE 166
+T W CS CG ++ G C C + T+ + + P Q P+ P
Sbjct: 5 KTVWECSQCGERYAKFLGRCDHCGAWNTLTEVVVAPAAKSPRAQ-ALAPRSNRANGIPRS 63
Query: 167 VQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQ 226
P+ + ++ + LS +G E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ
Sbjct: 64 ALPLSQVSSDRHPR-------LSSGYG-EFDRVLGGGIVPGSLVLIGGDPGIGKSTLLLQ 115
Query: 227 MAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQP 286
AA L + P++YVSGEES +QI RA+R+ + +E+L+L + TD+E IV ++Q
Sbjct: 116 SAA------HLAKSGPILYVSGEESAQQIKLRAERLGVESEQLYLLAETDLEAIVAEIQA 169
Query: 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIA 346
L P+ +IDSIQ ++ + + G + QV+ECT L+R AKK + +L+ GHVTK G +A
Sbjct: 170 LQPQVAVIDSIQAIFWGQLTSAPGSVSQVRECTGLLMRLAKKLGVALLIVGHVTKDGSLA 229
Query: 347 GPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFL 406
GP+VLEH+VD VLY EG++F S+RLLR+VKNRFG+ E+GVFEM+ GL V NPS++FL
Sbjct: 230 GPKVLEHLVDTVLYFEGDRFQSHRLLRAVKNRFGAAQEMGVFEMTASGLVEVENPSQLFL 289
Query: 407 SEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVL 464
S S + + G A V +G+R ++E+QAL S S+ R GI+ +R I++VL
Sbjct: 290 S---SRDQAMPGTATIVACEGTRPLVVEVQALVSPTSYSSPRRTSTGIEINRFLQILAVL 346
Query: 465 MKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGE 524
K+ G+ L + ++ G+ + E A DL VA A+ +SF + + IGE+GLGG+
Sbjct: 347 EKRVGIPLSKYDAYIASAGGIQVAEPAADLGVAVAVAASFRDRQVDPFTVLIGEVGLGGQ 406
Query: 525 LRMVSRMEKRVSTVAKLGYRKCIVPKS 551
+R V+++E+R+ +KLG+R I+P S
Sbjct: 407 VRPVAQLEQRLKEASKLGFRHAIIPNS 433
>gi|418966281|ref|ZP_13518028.1| DNA repair protein RadA [Streptococcus constellatus subsp.
constellatus SK53]
gi|383340447|gb|EID18743.1| DNA repair protein RadA [Streptococcus constellatus subsp.
constellatus SK53]
Length = 465
Score = 342 bits (878), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 196/471 (41%), Positives = 276/471 (58%), Gaps = 26/471 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+ +VC +C Y ++ G C C + + + V T +P ++ V
Sbjct: 17 KATFVCQNCEYHSPKYLGRCPNCGAWSSFVEEVEVTEIKNARVSLTGEKSRPMKLAEVTS 76
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
+ VN+ +D E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++
Sbjct: 77 INVNRTKTDMD-----------EFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVST--- 122
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
L V+YVSGEES EQI RA+R+ E +LY+ T+++ I +++ + P L
Sbjct: 123 ---QLSHKGTVLYVSGEESAEQIKLRAERLGDIDSEFYLYAETNMQSIRAEIEKIKPDFL 179
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
I+DSIQT+ ++ G + QV+E T+ L++ AK NI + GH+TK G +AGPR LE
Sbjct: 180 IVDSIQTILSPEISSVQGSVSQVREVTAELMQLAKTNNIATFIVGHMTKEGTLAGPRTLE 239
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS++FL E+
Sbjct: 240 HMVDTVLYFEGERQHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVINPSQVFLEERLDG 299
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
+ G ++ V M+G+R L E+QAL R G+ +RA +I++VL K+AGL
Sbjct: 300 A---TGSSIVVTMEGTRPILAEVQALVTPTMFGNAKRTTTGLDFNRASLIMAVLEKRAGL 356
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ +L GV L E A DLAVA AI SS+ E P +IGEIGL GE+R V+R
Sbjct: 357 LLQNQDAYLKSAGGVRLDEPAIDLAVAVAIASSYKEKPTNPQECYIGEIGLTGEIRRVNR 416
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGF-EQMEFIGCKNLKEVINVVF 580
+E+R++ KLG+ K VPK+ SL L E+ E IG + EV+ VF
Sbjct: 417 IEQRINEAVKLGFTKIYVPKN---SLNGLNIPEKTEVIGVTTIGEVLKKVF 464
>gi|343525627|ref|ZP_08762582.1| DNA repair protein RadA [Streptococcus constellatus subsp.
pharyngis SK1060 = CCUG 46377]
gi|343395897|gb|EGV08435.1| DNA repair protein RadA [Streptococcus constellatus subsp.
pharyngis SK1060 = CCUG 46377]
Length = 465
Score = 342 bits (878), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 195/471 (41%), Positives = 277/471 (58%), Gaps = 26/471 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
++ +VC +C Y ++ G C C + + + V T +P ++ V
Sbjct: 17 KSTFVCQNCEYHSPKYLGRCPNCGTWSSFVEEVEVAEVKNARVSLTGEKTRPMKLAEVTS 76
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
++V + +D E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++
Sbjct: 77 IDVKRTKTDMD-----------EFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVST--- 122
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
L V+YVSGEES EQI RA+R+ E +LY+ T+++ I +++ + P L
Sbjct: 123 ---QLSHKGTVLYVSGEESAEQIKLRAERLGDIDSEFYLYAETNMQHIRAEIEKIKPDFL 179
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQT+ ++ G + QV+E T+ L++ AK NI + GH+TK G +AGPR LE
Sbjct: 180 IIDSIQTIVSPEISSMQGSVSQVREVTAELMQLAKTNNIATFIVGHMTKEGTLAGPRTLE 239
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS++FL E+
Sbjct: 240 HMVDTVLYFEGERQHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDG 299
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
+ G ++ V M+G+R L E+QAL R G+ +RA +I++VL K+AGL
Sbjct: 300 A---TGSSIVVTMEGTRPILAEVQALVTPTMFGNAKRTTAGLDFNRASLIMAVLEKRAGL 356
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ +L GV L E A DLAVA AI SS+ E P +IGEIGL GE+R V+R
Sbjct: 357 LLQNQDAYLKSAGGVRLDEPAIDLAVAVAIASSYKEKPTNPQECYIGEIGLTGEIRRVNR 416
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGF-EQMEFIGCKNLKEVINVVF 580
+E+R++ KLG+ K VPK+ SL L ++ E IG + EV+ VF
Sbjct: 417 IEQRITEAVKLGFTKIYVPKN---SLNGLNIPDKTEVIGVTTIGEVLKKVF 464
>gi|218247107|ref|YP_002372478.1| DNA repair protein RadA [Cyanothece sp. PCC 8801]
gi|257060176|ref|YP_003138064.1| DNA repair protein RadA [Cyanothece sp. PCC 8802]
gi|218167585|gb|ACK66322.1| DNA repair protein RadA [Cyanothece sp. PCC 8801]
gi|256590342|gb|ACV01229.1| DNA repair protein RadA [Cyanothece sp. PCC 8802]
Length = 514
Score = 342 bits (878), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 197/481 (40%), Positives = 287/481 (59%), Gaps = 59/481 (12%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTW-----------L 160
+RT ++CS CG QW+G C +C GT++ S G + + W
Sbjct: 4 SRTIYICSTCGAESPQWFGKCPSCGVYGTLEEQVVNTSPPGAISRGGWQTGSRSEGVSSA 63
Query: 161 PQKPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGK 220
P KP P E+ + ++ R P SG E+ RVLGGG+VPGSLVLIGGDPG+GK
Sbjct: 64 PPKPRISIPFS--EITQTEQE---RFP-SGY--GELDRVLGGGVVPGSLVLIGGDPGIGK 115
Query: 221 STLLLQMAAIIADVHDLGEPSP-VVYVSGEESVEQIGNRADRMMIA-------------- 265
STLLLQ A + L + P ++YVS EES +Q+ RA R+ +
Sbjct: 116 STLLLQTA------NQLSQRLPRILYVSAEESGQQVKLRASRLGVTELTPTTDSNSNGNP 169
Query: 266 -----TEE---------LFLYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGG 311
+EE L++ TD+E+I+ +++ L P+ +IDSIQT+Y + + G
Sbjct: 170 KKETESEELKLTEPYANLYILPETDLEEILRELESLKPQVAVIDSIQTLYFAALTSAPGS 229
Query: 312 LMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRL 371
+ QV+ECTSAL++ AK+ NI +L+ GHVTK G IAGPRVLEH+VD VLY EG++++S+RL
Sbjct: 230 VAQVRECTSALMQVAKRENITLLIVGHVTKEGAIAGPRVLEHLVDTVLYFEGDRYASHRL 289
Query: 372 LRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSF 431
LRSVKNRFG+T E+G+FEM++ GL V+NPS++FL + EF G A V +G+R
Sbjct: 290 LRSVKNRFGATHEIGIFEMAEHGLVEVANPSELFLGNR---DEFAPGTATVVACEGTRPL 346
Query: 432 LIEIQALC--VSGSTVSRHVNGIQASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTE 489
++E+QAL S S+ R G+ SR I++VL K+ G+ L + ++ G+ + E
Sbjct: 347 VVELQALVSPTSYSSPRRSTTGVDYSRLQQILAVLEKRVGIPLSKLDAYVASAGGLGVEE 406
Query: 490 TAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVP 549
A DL +A A+ +SF + + IGE+GLGG++R+VS+ME R+ AKLG+++ IVP
Sbjct: 407 PAADLGIAIAVVASFRDRVVDPRTVLIGEVGLGGQVRLVSQMELRLKEAAKLGFKRAIVP 466
Query: 550 K 550
K
Sbjct: 467 K 467
>gi|438003415|ref|YP_007273158.1| DNA repair protein RadA [Tepidanaerobacter acetatoxydans Re1]
gi|432180209|emb|CCP27182.1| DNA repair protein RadA [Tepidanaerobacter acetatoxydans Re1]
Length = 447
Score = 342 bits (878), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 194/469 (41%), Positives = 283/469 (60%), Gaps = 31/469 (6%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+ ++C CG +W G C C+S ++ E PV + + + + P ++ +
Sbjct: 4 KKRFICQQCGAVTPKWMGRCPECDSWNSIV-----EEKVLPVEKVSGVYKSPLNLKDIIY 58
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
E + + +D E+ RVLGGG+VPGSLVL+GGDPG+GKSTL+LQ+
Sbjct: 59 SEDERILTSID-----------ELDRVLGGGIVPGSLVLVGGDPGIGKSTLMLQICG--- 104
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+L + + V+YVSGEES +QI RADR+ I L++ + D+ I ++ L P
Sbjct: 105 ---NLSKKTSVLYVSGEESEKQIKLRADRLGIKDGALYILAENDMNIIEMAIKELRPDVA 161
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQTVY ++ G + Q++E T LR AK+T + + GHVTK G +AGP++LE
Sbjct: 162 IIDSIQTVYFPELSSGPGSVSQIREATVKCLRIAKETGSAIFIIGHVTKEGSLAGPKLLE 221
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD+VLY EGE++ SYRLLRSVKNRFGST+E+G+FEM GL VS+PSK LS + D
Sbjct: 222 HMVDSVLYFEGERYHSYRLLRSVKNRFGSTNEIGIFEMRDKGLVEVSSPSKYLLSGKPKD 281
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVS---RHVNGIQASRADMIISVLMKQAG 469
+ AG AV +++G+R L+E+QAL VS S + R +GI +RA ++I+VL K+
Sbjct: 282 T---AGSAVVCVLEGTRPLLVEVQAL-VSRSGFNLPRRQTSGIDYNRAALLIAVLEKKIR 337
Query: 470 LKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVS 529
+ + IF+NV G+ + E DLAV A+ SSF P+ IGE+GL GE+R VS
Sbjct: 338 IYVSSEDIFINVAGGIKIEEPGADLAVELAVASSFKNRPVMEDTVIIGEVGLAGEVRAVS 397
Query: 530 RMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINV 578
+EKRV AKLG+ K I+P E ++ +++ G KN+KE + +
Sbjct: 398 HVEKRVQEAAKLGFSKAIIP--YENAIDMQKSPKIKIEGIKNVKEAVEI 444
>gi|357237589|ref|ZP_09124930.1| DNA repair protein RadA [Streptococcus ictaluri 707-05]
gi|356753779|gb|EHI70882.1| DNA repair protein RadA [Streptococcus ictaluri 707-05]
Length = 453
Score = 342 bits (878), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 191/445 (42%), Positives = 271/445 (60%), Gaps = 28/445 (6%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+ ++C +CGY ++ G C C + + A + + V T E+ +P++L
Sbjct: 5 KATFICQECGYQSPKYLGRCPNCSAWSSFVEEVAVKEVKNARVSLTG-----EKSRPIKL 59
Query: 173 LEVNK---GMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAA 229
+V+ Q D E RVLGGG+VPGSL+LIGGDPG+GKSTLLLQ++
Sbjct: 60 KDVDNVSYHRTQTDMA---------EFNRVLGGGVVPGSLILIGGDPGIGKSTLLLQVST 110
Query: 230 IIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSP 289
+A+ V+YVSGEES EQI R++R+ E +LY+ T++++I +++ L+P
Sbjct: 111 QLAN------KGTVLYVSGEESAEQIKLRSERLGNIDNEFYLYAETNMQEIRVEIEKLAP 164
Query: 290 RALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPR 349
LIIDSIQT+ + G G + QV+E T+ L++ AK NI + GHVTK G +AGPR
Sbjct: 165 DFLIIDSIQTIMSPDITGVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTLAGPR 224
Query: 350 VLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQ 409
+LEH+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS++FL E+
Sbjct: 225 MLEHMVDTVLYFEGERHHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEER 284
Query: 410 HSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQ 467
+ G AV V M+GSR L E+Q+L R G+ +R +I++VL K+
Sbjct: 285 LDGA---TGSAVVVTMEGSRPILAEVQSLVTPTVFGNARRTTTGLDFNRVSLIMAVLEKR 341
Query: 468 AGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRM 527
GL LQ +L GV L E A DLAVA AI SS+ E P AF+GEIGL GE+R
Sbjct: 342 CGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTSPQEAFLGEIGLTGEIRR 401
Query: 528 VSRMEKRVSTVAKLGYRKCIVPKSA 552
V+R+E+R++ AKLG+ K PK+A
Sbjct: 402 VTRIEQRINEAAKLGFTKIYAPKNA 426
>gi|150024216|ref|YP_001295042.1| DNA repair protein RadA [Flavobacterium psychrophilum JIP02/86]
gi|149770757|emb|CAL42222.1| DNA repair protein RadA [Flavobacterium psychrophilum JIP02/86]
Length = 453
Score = 342 bits (878), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 185/458 (40%), Positives = 275/458 (60%), Gaps = 33/458 (7%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTM------KRYSAGESDEGPVVQRTWLPQKPEE 166
+T++ C CG +W G C AC+ T+ K E V++ P +E
Sbjct: 5 KTSFFCQSCGSQYSKWQGQCNACKEWNTIVEEIIQKEEKVAWKAETSEVKKASKPLLVKE 64
Query: 167 VQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQ 226
+ + + +N E+ RVLGGG+VPGSL+L+GG+PG+GKSTLLLQ
Sbjct: 65 IDSTQEIRMNT--------------CDGELNRVLGGGIVPGSLILLGGEPGIGKSTLLLQ 110
Query: 227 MAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQP 286
++ L P +YVSGEES +QI RA+R+ + ++ + T ++I ++Q
Sbjct: 111 IS--------LKLPYKTLYVSGEESQKQIKMRAERITTNGDNCYILTETKTQNIFRQIQE 162
Query: 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIA 346
+ P +IIDSIQT++ + S G + Q++E T+ L++FAK+TN+PV+L GH+TK G IA
Sbjct: 163 IEPEIVIIDSIQTLHTDYIESSPGSISQIRETTAELIKFAKETNVPVILIGHITKDGSIA 222
Query: 347 GPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFL 406
GP++LEH+VD VL EG++ YR+LRS+KNRFGST ELG++EM GL+ VSNPS+I +
Sbjct: 223 GPKILEHMVDTVLQFEGDRNHVYRILRSLKNRFGSTAELGIYEMQGSGLREVSNPSEILI 282
Query: 407 SEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVL 464
S ++ E L+G A+A ++G R +IEIQAL + T R G A R +MI++VL
Sbjct: 283 SHKN---EELSGTAIASTLEGMRPLMIEIQALVSTAVYGTPQRSTTGYNAKRLNMILAVL 339
Query: 465 MKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGE 524
K+AG +L +FLN+ G+++ + A DLAV AAI SS + PI F GE+GL GE
Sbjct: 340 EKRAGFRLGAKDVFLNITGGISVDDPAIDLAVVAAILSSNEDIPINKDFCFAGEVGLSGE 399
Query: 525 LRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFE 562
+R V+R+++R+ KLG+ V K + SL G +
Sbjct: 400 IRPVNRVDQRIQEAEKLGFSTIYVSKYNKISLKNTGIK 437
>gi|209558765|ref|YP_002285237.1| DNA repair protein RadA [Streptococcus pyogenes NZ131]
gi|209539966|gb|ACI60542.1| RadA-like DNA repair protein [Streptococcus pyogenes NZ131]
Length = 464
Score = 342 bits (878), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 193/458 (42%), Positives = 276/458 (60%), Gaps = 28/458 (6%)
Query: 97 LGLGDLVGTRKKGKANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQ 156
LG GD G K+ ++C +CGY ++ G C C + + + + V
Sbjct: 6 LGKGDYYGKEKR------TFICQECGYQSPKYLGRCPNCSAWSSFVEEVEVKEVKNARVS 59
Query: 157 RTWLPQKPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDP 216
E+ +PV+L +V+ + + + + +E RVLGGG+VPGSL+LIGGDP
Sbjct: 60 LAG-----EKSRPVKLKDVDN----ISYHRTQTDM--SEFNRVLGGGVVPGSLILIGGDP 108
Query: 217 GVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTD 276
G+GKSTLLLQ++ +A+ V+YVSGEES EQI R++R+ E +LY+ T+
Sbjct: 109 GIGKSTLLLQVSTQLAN------KGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETN 162
Query: 277 IEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLA 336
++ I +++ + P LIIDSIQT+ + G G + QV+E T+ L++ AK NI +
Sbjct: 163 MQAIRTEIENIKPDFLIIDSIQTIMSPDITGVQGSVSQVREVTAELMQLAKTNNIATFIV 222
Query: 337 GHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQ 396
GHVTK G +AGPR+LEH+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL
Sbjct: 223 GHVTKEGTLAGPRMLEHMVDTVLYFEGERHHTFRILRAVKNRFGSTNEIGIFEMQSGGLV 282
Query: 397 AVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQA 454
V NPS++FL E+ + G AV V M+GSR L E+Q+L R G+
Sbjct: 283 EVLNPSQVFLEERLDGA---TGSAVVVTMEGSRPILAEVQSLVTPTVFGNARRTTTGLDF 339
Query: 455 SRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIA 514
+R +I++VL K+ GL LQ +L GV L E A DLAVA AI SS+ E P A
Sbjct: 340 NRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTSPQEA 399
Query: 515 FIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSA 552
F+GEIGL GE+R V+R+E+R++ AKLG+ K PK+A
Sbjct: 400 FLGEIGLTGEIRRVTRIEQRINEAAKLGFTKVYAPKNA 437
>gi|313147540|ref|ZP_07809733.1| DNA repair protein RadA [Bacteroides fragilis 3_1_12]
gi|313136307|gb|EFR53667.1| DNA repair protein RadA [Bacteroides fragilis 3_1_12]
Length = 455
Score = 342 bits (878), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 188/446 (42%), Positives = 273/446 (61%), Gaps = 33/446 (7%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKP------EE 166
+T +VCS+CG +W G C +C G Y +V++ ++P +
Sbjct: 5 KTVYVCSNCGQESPKWVGKCPSC---GEWNTYVE------EIVRKEVPNKRPVSGIESPK 55
Query: 167 VQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQ 226
+PV L E+ + P + E+ RVLGGGLVPGSLVLIGG+PG+GKSTL+LQ
Sbjct: 56 AKPVTLNEIEADEE------PRIDMHDEELNRVLGGGLVPGSLVLIGGEPGIGKSTLVLQ 109
Query: 227 MAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQP 286
+ + ++Y+SGEES Q+ RADR+ A+ + + T +E I ++
Sbjct: 110 TVLHMPERR-------ILYISGEESARQLKLRADRLTQASSDCLIVCETSLEQIYVHIKN 162
Query: 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIA 346
P +IIDSIQT+ + S G + QV+EC++++LRFAK+T+ PVLL GH+ K G IA
Sbjct: 163 TRPDLVIIDSIQTISTESIESSPGSIAQVRECSASILRFAKETHTPVLLIGHINKEGSIA 222
Query: 347 GPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFL 406
GP+VLEHIVD VL EG++ YR+LRS+KNRFGST ELG++EM Q GL+ VSNPS++ L
Sbjct: 223 GPKVLEHIVDTVLQFEGDQHYMYRILRSIKNRFGSTAELGIYEMRQDGLRQVSNPSELLL 282
Query: 407 SEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVL 464
S+ H E ++G+A+A ++G R FLIE QAL S R G R +M+++VL
Sbjct: 283 SQDH---EGMSGVAIASAIEGVRPFLIETQALVSSAVYGNPQRSATGFDIRRMNMLLAVL 339
Query: 465 MKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGE 524
K+ G KL + +FLN+ G+ + + A DLAV +AI SS ++ I + GEIGL GE
Sbjct: 340 EKRVGFKLAQKDVFLNIAGGLKVNDPAIDLAVISAILSSNMDTAIEPEVCMAGEIGLSGE 399
Query: 525 LRMVSRMEKRVSTVAKLGYRKCIVPK 550
+R V+R+E+R+ KLG+++ I+PK
Sbjct: 400 IRPVNRIEQRIGEAEKLGFKRFILPK 425
>gi|417936912|ref|ZP_12580218.1| DNA repair protein RadA [Streptococcus infantis X]
gi|343399354|gb|EGV11876.1| DNA repair protein RadA [Streptococcus infantis X]
Length = 445
Score = 342 bits (878), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 191/467 (40%), Positives = 283/467 (60%), Gaps = 24/467 (5%)
Query: 117 VCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRLLEVN 176
+C +C Y ++ G C C + + + V T KP ++ V + VN
Sbjct: 1 MCQNCEYNSPKYLGRCPNCGAWSSFIEEVEVAEVKNARVSLTGEKTKPMKLAEVTSINVN 60
Query: 177 KGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHD 236
+ +++ E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ ++ V
Sbjct: 61 RTKTEME-----------EFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSQV-- 107
Query: 237 LGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIIDS 296
V+YVSGEES +QI RA+R+ E +LY+ T+++ + +V+ + P LIIDS
Sbjct: 108 ----GTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSVRAEVERIQPDFLIIDS 163
Query: 297 IQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVD 356
IQT+ ++G G + QV+E T+ L++ AK NI + + GHVTK G +AGPR+LEH+VD
Sbjct: 164 IQTIMSPEISGVQGSVSQVREVTAELMQLAKTNNIAIFIVGHVTKEGTLAGPRMLEHMVD 223
Query: 357 AVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFL 416
VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS++FL E+ +
Sbjct: 224 TVLYFEGERHHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSEVFLEERLDGA--- 280
Query: 417 AGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGLKLQE 474
G ++ V M+G+R L E+QAL R G+ +RA +I++VL K+AGL LQ
Sbjct: 281 TGSSIVVTMEGTRPILAEVQALVTPTMFGNAKRTTTGLDFNRASLIMAVLEKRAGLLLQN 340
Query: 475 NAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKR 534
+L GV L E A DLAVA AI SS+ + P F+GE+GL GE+R V+R+E+R
Sbjct: 341 QDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKPTNPQECFVGELGLTGEIRRVNRIEQR 400
Query: 535 VSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVFT 581
++ AKLG+ K VPK++ + ++++ IG ++EV+ VF+
Sbjct: 401 INEAAKLGFTKIYVPKNSLTGIKPP--KEIQVIGVTTIQEVLKKVFS 445
>gi|256956977|ref|ZP_05561148.1| DNA repair protein RadA [Enterococcus faecalis DS5]
gi|257078653|ref|ZP_05573014.1| DNA repair protein RadA [Enterococcus faecalis JH1]
gi|294779998|ref|ZP_06745377.1| DNA repair protein RadA [Enterococcus faecalis PC1.1]
gi|307268956|ref|ZP_07550320.1| DNA repair protein RadA [Enterococcus faecalis TX4248]
gi|422709047|ref|ZP_16766561.1| DNA repair protein RadA [Enterococcus faecalis TX0027]
gi|422719159|ref|ZP_16775807.1| DNA repair protein RadA [Enterococcus faecalis TX0017]
gi|256947473|gb|EEU64105.1| DNA repair protein RadA [Enterococcus faecalis DS5]
gi|256986683|gb|EEU73985.1| DNA repair protein RadA [Enterococcus faecalis JH1]
gi|294452892|gb|EFG21315.1| DNA repair protein RadA [Enterococcus faecalis PC1.1]
gi|306514764|gb|EFM83315.1| DNA repair protein RadA [Enterococcus faecalis TX4248]
gi|315033518|gb|EFT45450.1| DNA repair protein RadA [Enterococcus faecalis TX0017]
gi|315036341|gb|EFT48273.1| DNA repair protein RadA [Enterococcus faecalis TX0027]
Length = 456
Score = 342 bits (877), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 202/477 (42%), Positives = 280/477 (58%), Gaps = 30/477 (6%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQP 169
K + + C CGY ++ G C C +M ++ + +R + ++ QP
Sbjct: 3 KKAKVQFECQSCGYVSPKYLGRCPNCGQWNSMVEEVIQDTSD----RRARVSLTGKKTQP 58
Query: 170 VRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAA 229
RL EV + + + R+ + E+ RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++
Sbjct: 59 QRLSEV---IPKKEPRVKTELV---ELNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSQ 112
Query: 230 IIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSP 289
+A V+YVSGEES EQI RA+R+ E +LY+ TD+ +I ++ L P
Sbjct: 113 QLAATG-----GTVLYVSGEESAEQIKLRAERLGTVNETFYLYAETDMHEISRAIEKLEP 167
Query: 290 RALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPR 349
+IIDSIQT+ V AG + QV+E T+ LL+ AK I + + GHVTK G IAGPR
Sbjct: 168 DYVIIDSIQTMTQPDVTSVAGSVSQVRETTAELLKLAKTNGIAIFIVGHVTKEGSIAGPR 227
Query: 350 VLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQ 409
+LEH+VD VLY EG+K ++R+LR+VKNRFGST+E+G+FEM GL V NPS++FL E+
Sbjct: 228 MLEHMVDTVLYFEGDKHHTFRILRAVKNRFGSTNEIGIFEMQTHGLVEVMNPSQVFLEER 287
Query: 410 HSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQ 467
E G ++ V M+GSR L+EIQAL R G+ +R +I++VL K+
Sbjct: 288 L---EGATGSSIVVAMEGSRPILVEIQALVTPTMFGNAKRTTTGLDFNRVSLIMAVLEKR 344
Query: 468 AGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRM 527
AGL LQ +L GV + E A DLA+A +I SS+ E + FIGEIGL GE+R
Sbjct: 345 AGLLLQNQDAYLKAAGGVKINEPAIDLALAISIASSYKEKGTSSSECFIGEIGLTGEIRR 404
Query: 528 VSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGF----EQMEFIGCKNLKEVINVVF 580
V+ +E+RV KLG+ K VPK+ LG E +E IG + E + VF
Sbjct: 405 VNSIEQRVREAQKLGFTKVYVPKN------NLGGWKAPEGIEIIGVSTIGETLRKVF 455
>gi|404498127|ref|YP_006722233.1| DNA repair protein RadA [Geobacter metallireducens GS-15]
gi|418066070|ref|ZP_12703438.1| DNA repair protein RadA [Geobacter metallireducens RCH3]
gi|78195723|gb|ABB33490.1| DNA repair protein RadA [Geobacter metallireducens GS-15]
gi|373561303|gb|EHP87542.1| DNA repair protein RadA [Geobacter metallireducens RCH3]
Length = 449
Score = 342 bits (877), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 194/466 (41%), Positives = 288/466 (61%), Gaps = 26/466 (5%)
Query: 114 TNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRLL 173
T +VC +CGY +W G C C + ++ G+ +GP + V PV +
Sbjct: 5 TLYVCQNCGYQSAKWLGKCPDCSAWNSLVEEVRGKG-KGPSAPLSG-------VAPVPIC 56
Query: 174 EVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIAD 233
+V + + R+P G+ +E RVLGGGLV GS++LIGGDPG+GKSTLLLQ+ +A
Sbjct: 57 DVAG---EAEERLP-CGI--SEFDRVLGGGLVAGSVILIGGDPGIGKSTLLLQVMDHLAR 110
Query: 234 VHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALI 293
PV+YVSGEES Q R +R+ I +EL + + T +E ++ ++ ++PRA++
Sbjct: 111 TV-----GPVLYVSGEESARQARLRGERLGIRAKELLILAETALETVLAQIGAVAPRAVV 165
Query: 294 IDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEH 353
IDSIQT+Y G+ + G + QV+EC L+ AK++ IP + GHVTK G IAGPRVLEH
Sbjct: 166 IDSIQTMYAPGLESAPGSVSQVRECAGRLMVAAKRSAIPTFIVGHVTKDGSIAGPRVLEH 225
Query: 354 IVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDS 413
+VD VLY EG++ ++R+LR+VKNRFGST+E+GVFEM + GL V NPS+IFLSE+
Sbjct: 226 MVDTVLYFEGDRGHAFRILRAVKNRFGSTNEIGVFEMKEGGLCEVRNPSEIFLSERPLG- 284
Query: 414 EFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMKQAGLK 471
++G AV ++GSR L+E+QAL S R G+ A+R ++++VL K+ GL
Sbjct: 285 --VSGSAVVTTIEGSRPLLVELQALVTPSSLGVPRRTTLGVDANRLALLVAVLDKKVGLH 342
Query: 472 LQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRM 531
+ IFLN G ++E A DL + AA+ SS L+ I +GE+GL GE+R +++
Sbjct: 343 MAGQDIFLNAAGGARVSEPAADLGMVAALASSHLDKVIDPQTVVVGEVGLAGEVRAITQP 402
Query: 532 EKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVIN 577
E RV AKLG+ + ++P + K + + E ME IG K+++E ++
Sbjct: 403 ETRVREAAKLGFTRAVIPAGSLKQVTAV--EGMEVIGVKSVEEALD 446
>gi|29374698|ref|NP_813850.1| DNA repair protein RadA [Enterococcus faecalis V583]
gi|227555722|ref|ZP_03985769.1| DNA repair protein RadA [Enterococcus faecalis HH22]
gi|256761890|ref|ZP_05502470.1| DNA repair protein RadA [Enterococcus faecalis T3]
gi|257087872|ref|ZP_05582233.1| DNA repair protein RadA [Enterococcus faecalis D6]
gi|257418807|ref|ZP_05595801.1| DNA repair protein radA [Enterococcus faecalis T11]
gi|422713148|ref|ZP_16769904.1| DNA repair protein RadA [Enterococcus faecalis TX0309A]
gi|422717771|ref|ZP_16774445.1| DNA repair protein RadA [Enterococcus faecalis TX0309B]
gi|422723280|ref|ZP_16779818.1| DNA repair protein RadA [Enterococcus faecalis TX2137]
gi|422734950|ref|ZP_16791230.1| DNA repair protein RadA [Enterococcus faecalis TX1341]
gi|424671644|ref|ZP_18108638.1| DNA repair protein RadA [Enterococcus faecalis 599]
gi|29342156|gb|AAO79922.1| DNA repair protein RadA [Enterococcus faecalis V583]
gi|227175127|gb|EEI56099.1| DNA repair protein RadA [Enterococcus faecalis HH22]
gi|256683141|gb|EEU22836.1| DNA repair protein RadA [Enterococcus faecalis T3]
gi|256995902|gb|EEU83204.1| DNA repair protein RadA [Enterococcus faecalis D6]
gi|257160635|gb|EEU90595.1| DNA repair protein radA [Enterococcus faecalis T11]
gi|315026633|gb|EFT38565.1| DNA repair protein RadA [Enterococcus faecalis TX2137]
gi|315168260|gb|EFU12277.1| DNA repair protein RadA [Enterococcus faecalis TX1341]
gi|315573954|gb|EFU86145.1| DNA repair protein RadA [Enterococcus faecalis TX0309B]
gi|315581905|gb|EFU94096.1| DNA repair protein RadA [Enterococcus faecalis TX0309A]
gi|402358259|gb|EJU92939.1| DNA repair protein RadA [Enterococcus faecalis 599]
Length = 456
Score = 342 bits (877), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 202/477 (42%), Positives = 280/477 (58%), Gaps = 30/477 (6%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQP 169
K + + C CGY ++ G C C +M ++ + +R + ++ QP
Sbjct: 3 KKAKVQFECQSCGYVSPKYLGRCPNCGQWNSMVEEVIQDTSD----RRARVSLTGKKTQP 58
Query: 170 VRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAA 229
RL EV + + + R+ + E+ RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++
Sbjct: 59 QRLSEV---IPKKEPRVKTELV---ELNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSQ 112
Query: 230 IIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSP 289
+A V+YVSGEES EQI RA+R+ E +LY+ TD+ +I ++ L P
Sbjct: 113 QLAATG-----GTVLYVSGEESAEQIKLRAERLGTVNETFYLYAETDMHEISRAIEKLEP 167
Query: 290 RALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPR 349
+IIDSIQT+ V AG + QV+E T+ LL+ AK I + + GHVTK G IAGPR
Sbjct: 168 DYVIIDSIQTMTQPDVTSVAGSVSQVRETTAELLKLAKTNGIAIFIVGHVTKEGSIAGPR 227
Query: 350 VLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQ 409
+LEH+VD VLY EG+K ++R+LR+VKNRFGST+E+G+FEM GL V NPS++FL E+
Sbjct: 228 MLEHMVDTVLYFEGDKHHTFRILRAVKNRFGSTNEIGIFEMQTHGLVEVMNPSQVFLEER 287
Query: 410 HSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQ 467
E G ++ V M+GSR L+EIQAL R G+ +R +I++VL K+
Sbjct: 288 L---EGATGSSIVVAMEGSRPILVEIQALVTPTMFGNAKRTTTGLDFNRVSLIMAVLEKR 344
Query: 468 AGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRM 527
AGL LQ +L GV + E A DLA+A +I SS+ E + FIGEIGL GE+R
Sbjct: 345 AGLLLQNQDAYLKAAGGVKINEPAIDLALAISIASSYKEKGTSSSECFIGEIGLTGEIRR 404
Query: 528 VSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGF----EQMEFIGCKNLKEVINVVF 580
V+ +E+RV KLG+ K VPK+ LG E +E IG + E + VF
Sbjct: 405 VNSIEQRVREAQKLGFTKVYVPKN------NLGGWEAPEGIEIIGVSTIGETLRKVF 455
>gi|424698912|ref|ZP_18135156.1| DNA repair protein RadA [Enterococcus faecalis ERV41]
gi|402369945|gb|EJV04191.1| DNA repair protein RadA [Enterococcus faecalis ERV41]
Length = 456
Score = 342 bits (877), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 202/477 (42%), Positives = 280/477 (58%), Gaps = 30/477 (6%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQP 169
K + + C CGY ++ G C C +M ++ + +R + ++ QP
Sbjct: 3 KKAKVQFECQSCGYVSPKYLGRCPNCGQWNSMVEEVIQDTSD----RRARVSLTGKKTQP 58
Query: 170 VRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAA 229
RL EV + + + R+ + E+ RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++
Sbjct: 59 QRLSEV---VPKKEPRVKTELV---ELNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQISQ 112
Query: 230 IIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSP 289
+A V+YVSGEES EQI RA+R+ E +LY+ TD+ +I ++ L P
Sbjct: 113 QLAATG-----GTVLYVSGEESAEQIKLRAERLGTVNETFYLYAETDMHEISRAIEKLEP 167
Query: 290 RALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPR 349
+IIDSIQT+ V AG + QV+E T+ LL+ AK I + + GHVTK G IAGPR
Sbjct: 168 DYVIIDSIQTMTQPDVTSVAGSVSQVRETTAELLKLAKTNGIAIFIVGHVTKEGSIAGPR 227
Query: 350 VLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQ 409
+LEH+VD VLY EG+K ++R+LR+VKNRFGST+E+G+FEM GL V NPS++FL E+
Sbjct: 228 MLEHMVDTVLYFEGDKHHTFRILRAVKNRFGSTNEIGIFEMQTHGLVEVMNPSQVFLEER 287
Query: 410 HSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQ 467
E G ++ V M+GSR L+EIQAL R G+ +R +I++VL K+
Sbjct: 288 L---EGATGSSIVVAMEGSRPILVEIQALVTPTMFGNAKRTTTGLDFNRVSLIMAVLEKR 344
Query: 468 AGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRM 527
AGL LQ +L GV + E A DLA+A +I SS+ E + FIGEIGL GE+R
Sbjct: 345 AGLLLQNQDAYLKAAGGVKINEPAIDLALAISIASSYKEKGTSSSECFIGEIGLTGEIRR 404
Query: 528 VSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGF----EQMEFIGCKNLKEVINVVF 580
V+ +E+RV KLG+ K VPK+ LG E +E IG + E + VF
Sbjct: 405 VNSIEQRVREAQKLGFTKVYVPKN------NLGGWEAPEGIEIIGVSTIGETLRKVF 455
>gi|337286209|ref|YP_004625682.1| DNA repair protein RadA [Thermodesulfatator indicus DSM 15286]
gi|335359037|gb|AEH44718.1| DNA repair protein RadA [Thermodesulfatator indicus DSM 15286]
Length = 446
Score = 342 bits (877), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 198/469 (42%), Positives = 285/469 (60%), Gaps = 30/469 (6%)
Query: 115 NWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRLLE 174
+ C +CGY +W G C C S GT+ V+ T + + LL+
Sbjct: 3 KFYCQECGYKSLKWLGRCPGCGSWGTL-------------VEETSSIISKKTSRKANLLK 49
Query: 175 VNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADV 234
+N+ ++ L + +GL +E+ +VLGGG+VPGSL+L+GGDPG+GKSTLLLQ+ +A
Sbjct: 50 INE-VESLKEKRLATGL--SELDQVLGGGIVPGSLILLGGDPGIGKSTLLLQVLKNLAS- 105
Query: 235 HDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALII 294
+ VVY+SGEES +QI RA+R+ + E++ L TD+ + V+ SP L +
Sbjct: 106 ----DGYKVVYLSGEESPQQIKLRAERLGVIKEDILLLPETDLAAALSSVEEESPVLLAV 161
Query: 295 DSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHI 354
DSIQTV+ V+ + G + QV+ECT+ LL FAK N+ V+L GHVTK G +AGPRVLEH+
Sbjct: 162 DSIQTVFWPEVSSAPGSVSQVRECTNKLLEFAKNKNVAVILVGHVTKEGMLAGPRVLEHL 221
Query: 355 VDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSE 414
VD VLY EGE+ + +R+LR+VKNRFGST+E+GVFEM+ GL+ +SNPS IFL+ + D
Sbjct: 222 VDTVLYFEGERTAHFRILRAVKNRFGSTNEIGVFEMTSSGLKPISNPSAIFLTRETLD-- 279
Query: 415 FLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGLKL 472
+ G + ++G+R L+E+QAL +T R G R MI ++L K+AGL
Sbjct: 280 -VPGSVICATLEGTRPILVEVQALVSRSYLATPRRTSVGFDPQRLAMIAAILEKKAGLSF 338
Query: 473 QENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRME 532
+ I+LNVV G+ LTE DLAVA A+ SS L+ P+P G+ GEIGL GE+R VS E
Sbjct: 339 YDQDIYLNVVGGLKLTEPGVDLAVAMALASSRLDRPLPQGLFLFGEIGLTGEVRQVSYPE 398
Query: 533 KRVSTVAKLGYRKCIVPKSAEKSLAT-LGFEQMEFIGCKNLKEVINVVF 580
R+ KLG+ P+ S++ + +Q+ NL+E I ++
Sbjct: 399 VRLKEGEKLGFDTVCAPRENLSSISNQIHLKQLP---VSNLQEAIEILL 444
>gi|424740145|ref|ZP_18168554.1| DNA repair protein RadA [Enterococcus faecalis ERV85]
gi|402402517|gb|EJV35226.1| DNA repair protein RadA [Enterococcus faecalis ERV85]
Length = 456
Score = 342 bits (877), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 202/477 (42%), Positives = 280/477 (58%), Gaps = 30/477 (6%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQP 169
K + + C CGY ++ G C C +M ++ + +R + ++ QP
Sbjct: 3 KKAKVQFECQSCGYVSPKYLGRCPNCGQWNSMVEEVIQDTSD----RRARVSLTGKKTQP 58
Query: 170 VRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAA 229
RL EV + + + R+ + E+ RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++
Sbjct: 59 QRLSEV---VPKKEPRVKTELV---ELNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSQ 112
Query: 230 IIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSP 289
+A V+YVSGEES EQI RA+R+ E +LY+ TD+ +I ++ L P
Sbjct: 113 QLAATG-----GTVLYVSGEESAEQIKLRAERLGTVNETFYLYAETDMHEISRAIEKLEP 167
Query: 290 RALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPR 349
+IIDSIQT+ V AG + QV+E T+ LL+ AK I + + GHVTK G IAGPR
Sbjct: 168 DYVIIDSIQTMTQPDVTSVAGSVSQVRETTAELLKLAKTNGIAIFIVGHVTKEGSIAGPR 227
Query: 350 VLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQ 409
+LEH+VD VLY EG+K ++R+LR+VKNRFGST+E+G+FEM GL V NPS++FL E+
Sbjct: 228 MLEHMVDTVLYFEGDKHHTFRILRAVKNRFGSTNEIGIFEMQTHGLVEVMNPSQVFLEER 287
Query: 410 HSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQ 467
E G ++ V M+GSR L+EIQAL R G+ +R +I++VL K+
Sbjct: 288 L---EGATGSSIVVAMEGSRPILVEIQALVTPKMFGNAKRTTTGLDFNRVSLIMAVLEKR 344
Query: 468 AGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRM 527
AGL LQ +L GV + E A DLA+A +I SS+ E + FIGEIGL GE+R
Sbjct: 345 AGLLLQNQDAYLKAAGGVKINEPAIDLALAISIASSYKEKGTSSSECFIGEIGLTGEIRR 404
Query: 528 VSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGF----EQMEFIGCKNLKEVINVVF 580
V+ +E+RV KLG+ K VPK+ LG E +E IG + E + VF
Sbjct: 405 VNSIEQRVREAQKLGFTKVYVPKN------NLGGWEAPEGIEIIGVSTIGETLRKVF 455
>gi|336392009|ref|ZP_08573408.1| DNA repair protein RadA [Lactobacillus coryniformis subsp. torquens
KCTC 3535]
Length = 456
Score = 342 bits (877), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 196/480 (40%), Positives = 288/480 (60%), Gaps = 39/480 (8%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRAC--------ESVGTMKRYSAGESD-EGPVVQRTWLPQK 163
+T +VC +CGY ++ G C C E + T K + +++ G V K
Sbjct: 5 KTQFVCQNCGYNSPRYLGRCPNCGAWNQMVEEKIATKKETTNAQANIAGHVA-------K 57
Query: 164 PEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTL 223
PE + V + + + QL E+ RVLGGG+VPGSLVLIGGDPG+GKSTL
Sbjct: 58 PELMAKVSIEKEPRVQTQLA-----------ELNRVLGGGIVPGSLVLIGGDPGIGKSTL 106
Query: 224 LLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEK 283
LLQ++ ++ + V+YVSGEES QI RA R+ +A ++L+LY TD+ I ++
Sbjct: 107 LLQVSGQLSQGKE-----KVLYVSGEESASQIKMRAGRLGVAGQQLYLYPETDMGSIRQQ 161
Query: 284 VQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSG 343
++ L P ++IDSIQT+ ++ + G + QV+E T++L+R AK+ I + + GHVTK G
Sbjct: 162 IESLKPDYVVIDSIQTMQEPDLSSAIGSVAQVREVTASLMRIAKQNQITIFIVGHVTKGG 221
Query: 344 DIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSK 403
IAGP++LEH+VD VLY EG++ +YR+LR+VKNRFGST+E+G+FEM GL V+NPS+
Sbjct: 222 AIAGPKILEHMVDTVLYFEGDQQRTYRILRAVKNRFGSTNEIGIFEMRAGGLHEVANPSE 281
Query: 404 IFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMII 461
IFL E+ + + G AV V ++G+R L+EIQAL R GI +RA +I+
Sbjct: 282 IFLEERLTGA---TGSAVVVSLEGTRPILVEIQALITPTVFGNAQRTTTGIDRNRAALIM 338
Query: 462 SVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGL 521
+VL K+A L LQ +L GV L E A DLAVA +I SS+ + F+GEIGL
Sbjct: 339 AVLEKRANLMLQNQDAYLKAAGGVKLDEPAIDLAVAVSIASSYRDKGTQATDCFVGEIGL 398
Query: 522 GGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVFT 581
GE+R V+R+E+R++ AKLG+++ +P + K L ++ IG + E + F
Sbjct: 399 TGEVRSVNRIEQRINEAAKLGFKRVFIPHNNLKGLEVP--PTIKVIGVTTVAEALQKAFN 456
>gi|227518070|ref|ZP_03948119.1| DNA repair protein RadA [Enterococcus faecalis TX0104]
gi|229547091|ref|ZP_04435816.1| DNA repair protein RadA [Enterococcus faecalis TX1322]
gi|229550663|ref|ZP_04439388.1| DNA repair protein RadA [Enterococcus faecalis ATCC 29200]
gi|255971586|ref|ZP_05422172.1| DNA repair protein RadA [Enterococcus faecalis T1]
gi|255974558|ref|ZP_05425144.1| DNA repair protein RadA [Enterococcus faecalis T2]
gi|256618490|ref|ZP_05475336.1| DNA repair protein RadA [Enterococcus faecalis ATCC 4200]
gi|256964019|ref|ZP_05568190.1| DNA repair protein RadA [Enterococcus faecalis HIP11704]
gi|257084043|ref|ZP_05578404.1| DNA repair protein RadA [Enterococcus faecalis Fly1]
gi|257088525|ref|ZP_05582886.1| DNA repair protein radA [Enterococcus faecalis CH188]
gi|257417463|ref|ZP_05594457.1| DNA repair protein RadA [Enterococcus faecalis ARO1/DG]
gi|257421379|ref|ZP_05598369.1| DNA repair protein radA [Enterococcus faecalis X98]
gi|293382255|ref|ZP_06628195.1| DNA repair protein RadA [Enterococcus faecalis R712]
gi|293386696|ref|ZP_06631269.1| DNA repair protein RadA [Enterococcus faecalis S613]
gi|300861972|ref|ZP_07108052.1| DNA repair protein RadA [Enterococcus faecalis TUSoD Ef11]
gi|307274051|ref|ZP_07555261.1| DNA repair protein RadA [Enterococcus faecalis TX0855]
gi|307276285|ref|ZP_07557412.1| DNA repair protein RadA [Enterococcus faecalis TX2134]
gi|307284098|ref|ZP_07564268.1| DNA repair protein RadA [Enterococcus faecalis TX0860]
gi|307287142|ref|ZP_07567213.1| DNA repair protein RadA [Enterococcus faecalis TX0109]
gi|312901257|ref|ZP_07760540.1| DNA repair protein RadA [Enterococcus faecalis TX0470]
gi|312903149|ref|ZP_07762330.1| DNA repair protein RadA [Enterococcus faecalis TX0635]
gi|312908767|ref|ZP_07767706.1| DNA repair protein RadA [Enterococcus faecalis DAPTO 512]
gi|312952474|ref|ZP_07771342.1| DNA repair protein RadA [Enterococcus faecalis TX0102]
gi|312979227|ref|ZP_07790931.1| DNA repair protein RadA [Enterococcus faecalis DAPTO 516]
gi|384512003|ref|YP_005707096.1| DNA repair protein RadA [Enterococcus faecalis OG1RF]
gi|384517144|ref|YP_005704449.1| DNA repair protein RadA [Enterococcus faecalis 62]
gi|397698623|ref|YP_006536411.1| DNA repair protein RadA [Enterococcus faecalis D32]
gi|421513998|ref|ZP_15960719.1| DNA repair protein RadA [Enterococcus faecalis ATCC 29212]
gi|422688328|ref|ZP_16746484.1| DNA repair protein RadA [Enterococcus faecalis TX0630]
gi|422691847|ref|ZP_16749876.1| DNA repair protein RadA [Enterococcus faecalis TX0031]
gi|422693547|ref|ZP_16751558.1| DNA repair protein RadA [Enterococcus faecalis TX4244]
gi|422697268|ref|ZP_16755213.1| DNA repair protein RadA [Enterococcus faecalis TX1346]
gi|422700217|ref|ZP_16758071.1| DNA repair protein RadA [Enterococcus faecalis TX1342]
gi|422702782|ref|ZP_16760611.1| DNA repair protein RadA [Enterococcus faecalis TX1302]
gi|422707478|ref|ZP_16765171.1| DNA repair protein RadA [Enterococcus faecalis TX0043]
gi|422726592|ref|ZP_16783039.1| DNA repair protein RadA [Enterococcus faecalis TX0312]
gi|422728222|ref|ZP_16784640.1| DNA repair protein RadA [Enterococcus faecalis TX0012]
gi|422730604|ref|ZP_16786993.1| DNA repair protein RadA [Enterococcus faecalis TX0645]
gi|422741662|ref|ZP_16795685.1| DNA repair protein RadA [Enterococcus faecalis TX2141]
gi|424678687|ref|ZP_18115525.1| DNA repair protein RadA [Enterococcus faecalis ERV103]
gi|424679934|ref|ZP_18116748.1| DNA repair protein RadA [Enterococcus faecalis ERV116]
gi|424685127|ref|ZP_18121829.1| DNA repair protein RadA [Enterococcus faecalis ERV129]
gi|424691334|ref|ZP_18127857.1| DNA repair protein RadA [Enterococcus faecalis ERV31]
gi|424700064|ref|ZP_18136270.1| DNA repair protein RadA [Enterococcus faecalis ERV62]
gi|424705106|ref|ZP_18141192.1| DNA repair protein RadA [Enterococcus faecalis ERV63]
gi|424706201|ref|ZP_18142208.1| DNA repair protein RadA [Enterococcus faecalis ERV65]
gi|424716042|ref|ZP_18145360.1| DNA repair protein RadA [Enterococcus faecalis ERV68]
gi|424719792|ref|ZP_18148926.1| DNA repair protein RadA [Enterococcus faecalis ERV72]
gi|424722900|ref|ZP_18151925.1| DNA repair protein RadA [Enterococcus faecalis ERV73]
gi|424727887|ref|ZP_18156514.1| DNA repair protein RadA [Enterococcus faecalis ERV81]
gi|424754725|ref|ZP_18182634.1| DNA repair protein RadA [Enterococcus faecalis ERV93]
gi|424757619|ref|ZP_18185355.1| DNA repair protein RadA [Enterococcus faecalis R508]
gi|428765722|ref|YP_007151833.1| DNA repair protein radA [Enterococcus faecalis str. Symbioflor 1]
gi|430361545|ref|ZP_19426705.1| DNA repair protein RadA [Enterococcus faecalis OG1X]
gi|430372126|ref|ZP_19429655.1| DNA repair protein RadA [Enterococcus faecalis M7]
gi|227074506|gb|EEI12469.1| DNA repair protein RadA [Enterococcus faecalis TX0104]
gi|229304229|gb|EEN70225.1| DNA repair protein RadA [Enterococcus faecalis ATCC 29200]
gi|229307820|gb|EEN73807.1| DNA repair protein RadA [Enterococcus faecalis TX1322]
gi|255962604|gb|EET95080.1| DNA repair protein RadA [Enterococcus faecalis T1]
gi|255967430|gb|EET98052.1| DNA repair protein RadA [Enterococcus faecalis T2]
gi|256598017|gb|EEU17193.1| DNA repair protein RadA [Enterococcus faecalis ATCC 4200]
gi|256954515|gb|EEU71147.1| DNA repair protein RadA [Enterococcus faecalis HIP11704]
gi|256992073|gb|EEU79375.1| DNA repair protein RadA [Enterococcus faecalis Fly1]
gi|256997337|gb|EEU83857.1| DNA repair protein radA [Enterococcus faecalis CH188]
gi|257159291|gb|EEU89251.1| DNA repair protein RadA [Enterococcus faecalis ARO1/DG]
gi|257163203|gb|EEU93163.1| DNA repair protein radA [Enterococcus faecalis X98]
gi|291080369|gb|EFE17733.1| DNA repair protein RadA [Enterococcus faecalis R712]
gi|291083865|gb|EFE20828.1| DNA repair protein RadA [Enterococcus faecalis S613]
gi|295112374|emb|CBL31011.1| DNA replication and repair protein RadA [Enterococcus sp. 7L76]
gi|300848497|gb|EFK76254.1| DNA repair protein RadA [Enterococcus faecalis TUSoD Ef11]
gi|306501740|gb|EFM71031.1| DNA repair protein RadA [Enterococcus faecalis TX0109]
gi|306503469|gb|EFM72718.1| DNA repair protein RadA [Enterococcus faecalis TX0860]
gi|306507028|gb|EFM76171.1| DNA repair protein RadA [Enterococcus faecalis TX2134]
gi|306509359|gb|EFM78419.1| DNA repair protein RadA [Enterococcus faecalis TX0855]
gi|310625205|gb|EFQ08488.1| DNA repair protein RadA [Enterococcus faecalis DAPTO 512]
gi|310629570|gb|EFQ12853.1| DNA repair protein RadA [Enterococcus faecalis TX0102]
gi|310633540|gb|EFQ16823.1| DNA repair protein RadA [Enterococcus faecalis TX0635]
gi|311287992|gb|EFQ66548.1| DNA repair protein RadA [Enterococcus faecalis DAPTO 516]
gi|311291634|gb|EFQ70190.1| DNA repair protein RadA [Enterococcus faecalis TX0470]
gi|315143644|gb|EFT87660.1| DNA repair protein RadA [Enterococcus faecalis TX2141]
gi|315149017|gb|EFT93033.1| DNA repair protein RadA [Enterococcus faecalis TX4244]
gi|315151329|gb|EFT95345.1| DNA repair protein RadA [Enterococcus faecalis TX0012]
gi|315153512|gb|EFT97528.1| DNA repair protein RadA [Enterococcus faecalis TX0031]
gi|315155083|gb|EFT99099.1| DNA repair protein RadA [Enterococcus faecalis TX0043]
gi|315158526|gb|EFU02543.1| DNA repair protein RadA [Enterococcus faecalis TX0312]
gi|315163373|gb|EFU07390.1| DNA repair protein RadA [Enterococcus faecalis TX0645]
gi|315165688|gb|EFU09705.1| DNA repair protein RadA [Enterococcus faecalis TX1302]
gi|315171284|gb|EFU15301.1| DNA repair protein RadA [Enterococcus faecalis TX1342]
gi|315174144|gb|EFU18161.1| DNA repair protein RadA [Enterococcus faecalis TX1346]
gi|315578636|gb|EFU90827.1| DNA repair protein RadA [Enterococcus faecalis TX0630]
gi|323479277|gb|ADX78716.1| DNA repair protein RadA [Enterococcus faecalis 62]
gi|327533892|gb|AEA92726.1| DNA repair protein RadA [Enterococcus faecalis OG1RF]
gi|397335262|gb|AFO42934.1| DNA repair protein RadA [Enterococcus faecalis D32]
gi|401672894|gb|EJS79331.1| DNA repair protein RadA [Enterococcus faecalis ATCC 29212]
gi|402350990|gb|EJU85884.1| DNA repair protein RadA [Enterococcus faecalis ERV103]
gi|402355403|gb|EJU90178.1| DNA repair protein RadA [Enterococcus faecalis ERV116]
gi|402359453|gb|EJU94083.1| DNA repair protein RadA [Enterococcus faecalis ERV129]
gi|402362243|gb|EJU96779.1| DNA repair protein RadA [Enterococcus faecalis ERV31]
gi|402374918|gb|EJV08920.1| DNA repair protein RadA [Enterococcus faecalis ERV62]
gi|402380268|gb|EJV14029.1| DNA repair protein RadA [Enterococcus faecalis ERV63]
gi|402388295|gb|EJV21741.1| DNA repair protein RadA [Enterococcus faecalis ERV65]
gi|402388968|gb|EJV22389.1| DNA repair protein RadA [Enterococcus faecalis ERV68]
gi|402395272|gb|EJV28382.1| DNA repair protein RadA [Enterococcus faecalis ERV72]
gi|402395467|gb|EJV28572.1| DNA repair protein RadA [Enterococcus faecalis ERV81]
gi|402400671|gb|EJV33487.1| DNA repair protein RadA [Enterococcus faecalis ERV73]
gi|402402834|gb|EJV35531.1| DNA repair protein RadA [Enterococcus faecalis ERV93]
gi|402406435|gb|EJV38986.1| DNA repair protein RadA [Enterococcus faecalis R508]
gi|427183895|emb|CCO71119.1| DNA repair protein radA [Enterococcus faecalis str. Symbioflor 1]
gi|429512413|gb|ELA02020.1| DNA repair protein RadA [Enterococcus faecalis OG1X]
gi|429514841|gb|ELA04375.1| DNA repair protein RadA [Enterococcus faecalis M7]
Length = 456
Score = 342 bits (877), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 202/477 (42%), Positives = 280/477 (58%), Gaps = 30/477 (6%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQP 169
K + + C CGY ++ G C C +M ++ + +R + ++ QP
Sbjct: 3 KKAKVQFECQSCGYVSPKYLGRCPNCGQWNSMVEEVIQDTSD----RRARVSLTGKKTQP 58
Query: 170 VRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAA 229
RL EV + + + R+ + E+ RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++
Sbjct: 59 QRLSEV---VPKKEPRVKTELV---ELNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSQ 112
Query: 230 IIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSP 289
+A V+YVSGEES EQI RA+R+ E +LY+ TD+ +I ++ L P
Sbjct: 113 QLAATG-----GTVLYVSGEESAEQIKLRAERLGTVNETFYLYAETDMHEISRAIEKLEP 167
Query: 290 RALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPR 349
+IIDSIQT+ V AG + QV+E T+ LL+ AK I + + GHVTK G IAGPR
Sbjct: 168 DYVIIDSIQTMTQPDVTSVAGSVSQVRETTAELLKLAKTNGIAIFIVGHVTKEGSIAGPR 227
Query: 350 VLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQ 409
+LEH+VD VLY EG+K ++R+LR+VKNRFGST+E+G+FEM GL V NPS++FL E+
Sbjct: 228 MLEHMVDTVLYFEGDKHHTFRILRAVKNRFGSTNEIGIFEMQTHGLVEVMNPSQVFLEER 287
Query: 410 HSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQ 467
E G ++ V M+GSR L+EIQAL R G+ +R +I++VL K+
Sbjct: 288 L---EGATGSSIVVAMEGSRPILVEIQALVTPTMFGNAKRTTTGLDFNRVSLIMAVLEKR 344
Query: 468 AGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRM 527
AGL LQ +L GV + E A DLA+A +I SS+ E + FIGEIGL GE+R
Sbjct: 345 AGLLLQNQDAYLKAAGGVKINEPAIDLALAISIASSYKEKGTSSSECFIGEIGLTGEIRR 404
Query: 528 VSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGF----EQMEFIGCKNLKEVINVVF 580
V+ +E+RV KLG+ K VPK+ LG E +E IG + E + VF
Sbjct: 405 VNSIEQRVREAQKLGFTKVYVPKN------NLGGWEAPEGIEIIGVSTIGETLRKVF 455
>gi|450063122|ref|ZP_21844746.1| DNA repair protein RadA [Streptococcus mutans NLML5]
gi|449205070|gb|EMC05837.1| DNA repair protein RadA [Streptococcus mutans NLML5]
Length = 466
Score = 342 bits (877), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 200/471 (42%), Positives = 282/471 (59%), Gaps = 26/471 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T +VC +CGY ++ G C C S + E E V+ + E+ +PV+L
Sbjct: 18 KTTFVCQECGYNSPKYLGRCPNCSSWSSFV-----EEIEVAEVKNARVSLTGEKTRPVKL 72
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
+V R+ + E RVLGGG+V GSLVLIGGDPG+GKSTLLLQ++ +A
Sbjct: 73 NQVTSSQAT---RVKTNM---EEFNRVLGGGVVSGSLVLIGGDPGIGKSTLLLQVSTQLA 126
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+ V YVSGEES EQI R++R+ E +LY+ T+++ I +++ + P L
Sbjct: 127 N------KGTVFYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQSIRAEIEKIQPDFL 180
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQTV ++ G + QV+E T+ L++ AK NI + GHVTK G +AGPR+LE
Sbjct: 181 IIDSIQTVMSPEISSVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTLAGPRMLE 240
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS++FL E+
Sbjct: 241 HMVDTVLYFEGERQHTFRILRAVKNRFGSTNEIGIFEMRSGGLVEVLNPSQVFLEERLDG 300
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
+ G A+ V M+G+R L E+QAL R G+ +R +I++VL K+ GL
Sbjct: 301 A---TGSAIVVTMEGTRPILAEVQALVTPTVFGNAKRTTTGLDFNRVSLIMAVLEKRCGL 357
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ +L GV L E A DLAVA AI SS+ E P +IGEIGL GE+R V+R
Sbjct: 358 LLQNQDAYLKSAGGVRLDEPAIDLAVAVAIASSYKEKPTNPQECYIGEIGLTGEIRRVNR 417
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQ-MEFIGCKNLKEVINVVF 580
+E+R++ +KLG+ K VPK+ SL+ L Q ++ IG + EV+ VF
Sbjct: 418 IEQRLNEASKLGFTKIFVPKN---SLSGLTIPQGIQVIGVTTVSEVLKKVF 465
>gi|386819059|ref|ZP_10106275.1| DNA repair protein RadA [Joostella marina DSM 19592]
gi|386424165|gb|EIJ37995.1| DNA repair protein RadA [Joostella marina DSM 19592]
Length = 453
Score = 342 bits (877), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 183/443 (41%), Positives = 272/443 (61%), Gaps = 27/443 (6%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLP---QKPEEVQP 169
+T + C +CG +W G C +C+ T+ + + ++ W P +P
Sbjct: 5 KTTFFCQNCGTQYAKWQGQCSSCKEWNTLVEEVVQKEE-----KKGWKPTDTSSKRTAKP 59
Query: 170 VRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAA 229
+R+ E++ + R+ GL E RVLGGG+VPGS+ L+GG+PG+GKSTLLLQ+A
Sbjct: 60 LRIQEIDGSQ---EMRMSSGGL---EFDRVLGGGIVPGSVTLLGGEPGIGKSTLLLQIA- 112
Query: 230 IIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSP 289
L P +YVSGEES +QI RA+R+ +++ ++ + T ++I ++++ P
Sbjct: 113 -------LHLPFKTLYVSGEESQKQIKMRAERIFPDSQQCYILTETKTQNIFKQIETTEP 165
Query: 290 RALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPR 349
LIIDSIQT++ + SAG + Q++ECTS L++FAK+TN PV+L GH+TK G IAGP+
Sbjct: 166 DILIIDSIQTLHTDYIESSAGSISQIRECTSELIKFAKETNTPVILIGHITKDGHIAGPK 225
Query: 350 VLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQ 409
+LEH+VD VL EG++ YR+LR++KNRFGST ELG++EM GL+ VSNPS+I +S+
Sbjct: 226 ILEHMVDTVLQFEGDRNHVYRILRALKNRFGSTAELGIYEMLGKGLREVSNPSEILISKT 285
Query: 410 HSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQ 467
E L+G A+A ++G R +IE+QAL + T R G R +M+++VL K+
Sbjct: 286 E---EELSGTAIAATLEGMRPLMIEVQALVSTAVYGTPQRTTTGYNVKRLNMLLAVLEKR 342
Query: 468 AGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRM 527
AG +L +FLN+ G+++ E A DLAV AAI SS + I F EIGL GE+R
Sbjct: 343 AGFRLGAKDVFLNITGGISIEEPAIDLAVVAAILSSNEDVAIEKDFCFAAEIGLAGEIRP 402
Query: 528 VSRMEKRVSTVAKLGYRKCIVPK 550
V R+E+R+ KLG+ V K
Sbjct: 403 VQRVEQRILEAEKLGFSTIFVSK 425
>gi|422868284|ref|ZP_16914831.1| DNA repair protein RadA [Enterococcus faecalis TX1467]
gi|329576203|gb|EGG57721.1| DNA repair protein RadA [Enterococcus faecalis TX1467]
Length = 456
Score = 342 bits (877), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 203/477 (42%), Positives = 279/477 (58%), Gaps = 30/477 (6%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQP 169
K + + C CGY ++ G C C +M E + +R + ++ QP
Sbjct: 3 KKAKVQFECQSCGYVSPKYLGRCPNCGQWNSM----VEEVIQDTSYRRARVSLTGKKTQP 58
Query: 170 VRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAA 229
RL EV + + + R+ + E+ RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++
Sbjct: 59 QRLSEV---IPKKEPRVKTELV---ELNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSQ 112
Query: 230 IIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSP 289
+A V+YVSGEES EQI RA+R+ E +LY+ TD+ +I ++ L P
Sbjct: 113 QLAATG-----GTVLYVSGEESAEQIKLRAERLGTVNETFYLYAETDMHEISRAIEKLEP 167
Query: 290 RALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPR 349
+IIDSIQT+ V AG + QV+E T+ LL+ AK I + + GHVTK G IAGPR
Sbjct: 168 DYVIIDSIQTMTQPDVTSVAGSVSQVRETTAELLKLAKTNGIAIFIVGHVTKEGSIAGPR 227
Query: 350 VLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQ 409
+LEH+VD VLY EG+K ++R+LR+VKNRFGST+E+G+FEM GL V NPS++FL E+
Sbjct: 228 MLEHMVDTVLYFEGDKHHTFRILRAVKNRFGSTNEIGIFEMQTHGLVEVMNPSQVFLEER 287
Query: 410 HSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQ 467
E G ++ V M+GSR L+EIQAL R G+ +R +I++VL K+
Sbjct: 288 L---EGATGSSIVVAMEGSRPILVEIQALVTPTMFGNAKRTTTGLDFNRVSLIMAVLEKR 344
Query: 468 AGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRM 527
AGL LQ +L GV + E A DLA+A +I SS+ E + FIGEIGL GE+R
Sbjct: 345 AGLLLQNQDAYLKAAGGVKINEPAIDLALAISIASSYKEKGTSSSECFIGEIGLTGEIRR 404
Query: 528 VSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGF----EQMEFIGCKNLKEVINVVF 580
V+ +E+RV KLG+ K VPK+ LG E +E IG + E + VF
Sbjct: 405 VNSIEQRVREAQKLGFTKVYVPKN------NLGGWKAPEGIEIIGVSTIGETLRKVF 455
>gi|110639980|ref|YP_680190.1| DNA repair protein RadA [Cytophaga hutchinsonii ATCC 33406]
gi|110282661|gb|ABG60847.1| DNA repair protein [Cytophaga hutchinsonii ATCC 33406]
Length = 455
Score = 342 bits (877), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 182/447 (40%), Positives = 282/447 (63%), Gaps = 24/447 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQ-PVR 171
++++ C CG +W G C +C T + D + +W + Q P
Sbjct: 5 KSSYFCQSCGAQSPKWVGRCASCGEWNTYVEEIIQKED-----KTSWNSSSAKIAQRPRH 59
Query: 172 LLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAII 231
L E+ +Q RI E+ RVLGGG+VPGS+VLIGG+PG+GKSTL+LQ+A +
Sbjct: 60 LKEITYSQEQ---RIITPD---GELNRVLGGGIVPGSIVLIGGEPGIGKSTLMLQVALKL 113
Query: 232 ADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRA 291
+ V V+YVSGEES +QI RA+R+ + ++ ++ + T ++I ++++ L P
Sbjct: 114 STVK-------VLYVSGEESEQQIKMRAERIEVPSDACYILTETSTQNIFKQIEMLQPEV 166
Query: 292 LIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVL 351
LIIDSIQT++ + +AG + QV+ECT+ LL++AK++ PV L GH+TK G +AGP+VL
Sbjct: 167 LIIDSIQTLHSAFIESAAGSISQVRECTAELLKYAKESGTPVFLIGHITKEGTLAGPKVL 226
Query: 352 EHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHS 411
EH+VD VL EG++ SYR+LR+ KNRFGST ELG+++MS GL+ V+NPS+I LS++
Sbjct: 227 EHMVDTVLQFEGDQHLSYRILRTTKNRFGSTSELGIYQMSGEGLREVTNPSEILLSQR-- 284
Query: 412 DSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMKQAG 469
E ++G+A+ ++G+R LIEIQ+L + + T R G + R +M+++VL K+ G
Sbjct: 285 -DEAISGIAIGATLEGNRPLLIEIQSLVSAATYGTPQRSSTGFDSKRLNMLLAVLEKRGG 343
Query: 470 LKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVS 529
++ +FLN+ G+ + + A D+AV ++ SSF + IP I F GE+GLGGE+R V+
Sbjct: 344 MRFGAQDVFLNIAGGLKVEDPALDMAVCVSLVSSFHDAIIPADICFAGEVGLGGEIRAVN 403
Query: 530 RMEKRVSTVAKLGYRKCIVPKSAEKSL 556
R+E+R+S KLG++ + K KSL
Sbjct: 404 RIEQRISEAEKLGFKHIFISKYNMKSL 430
>gi|256855018|ref|ZP_05560379.1| DNA repair protein RadA [Enterococcus faecalis T8]
gi|307296630|ref|ZP_07576450.1| DNA repair protein RadA [Enterococcus faecalis TX0411]
gi|422685655|ref|ZP_16743870.1| DNA repair protein RadA [Enterococcus faecalis TX4000]
gi|256709531|gb|EEU24578.1| DNA repair protein RadA [Enterococcus faecalis T8]
gi|306495966|gb|EFM65554.1| DNA repair protein RadA [Enterococcus faecalis TX0411]
gi|315029632|gb|EFT41564.1| DNA repair protein RadA [Enterococcus faecalis TX4000]
Length = 456
Score = 342 bits (877), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 202/477 (42%), Positives = 280/477 (58%), Gaps = 30/477 (6%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQP 169
K + + C CGY ++ G C C +M ++ + +R + ++ QP
Sbjct: 3 KKAKVQFECQSCGYVSPKYLGRCPNCGQWNSMVEEVIQDTSD----RRARVSLTGKKTQP 58
Query: 170 VRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAA 229
RL EV + + + R+ + E+ RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++
Sbjct: 59 QRLSEV---VPKKEPRVKTELV---ELNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSQ 112
Query: 230 IIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSP 289
+A V+YVSGEES EQI RA+R+ E +LY+ TD+ +I ++ L P
Sbjct: 113 QLAATG-----GTVLYVSGEESAEQIKLRAERLGTVNETFYLYAETDMHEISRAIEKLEP 167
Query: 290 RALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPR 349
+IIDSIQT+ V AG + QV+E T+ LL+ AK I + + GHVTK G IAGPR
Sbjct: 168 DYVIIDSIQTMTQPDVTSVAGSVSQVRETTAELLKLAKTNGIAIFIVGHVTKEGSIAGPR 227
Query: 350 VLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQ 409
+LEH+VD VLY EG+K ++R+LR+VKNRFGST+E+G+FEM GL V NPS++FL E+
Sbjct: 228 MLEHMVDTVLYFEGDKHHTFRILRAVKNRFGSTNEIGIFEMQTHGLVEVMNPSQVFLEER 287
Query: 410 HSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQ 467
E G ++ V M+GSR L+EIQAL R G+ +R +I++VL K+
Sbjct: 288 L---EGATGSSIVVAMEGSRPILVEIQALVTPTMFGNAKRTTTGLDFNRVSLIMAVLEKR 344
Query: 468 AGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRM 527
AGL LQ +L GV + E A DLA+A +I SS+ E + FIGEIGL GE+R
Sbjct: 345 AGLLLQNQDAYLKAAGGVKINEPAIDLALAISIASSYKEKGTSSSECFIGEIGLTGEIRR 404
Query: 528 VSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGF----EQMEFIGCKNLKEVINVVF 580
V+ +E+RV KLG+ K VPK+ LG E +E IG + E + VF
Sbjct: 405 VNSIEQRVREAQKLGFTKVYVPKN------NLGGWEAPEGIEIIGVSTIGETLRKVF 455
>gi|365903449|ref|ZP_09441272.1| DNA repair protein RadA [Lactobacillus malefermentans KCTC 3548]
Length = 457
Score = 342 bits (877), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 190/472 (40%), Positives = 283/472 (59%), Gaps = 24/472 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTM-KRYSAGES-DEGPVVQRTWLPQKPEEVQPV 170
+T +VC +CGY ++ G C C T+ + ES + V + KPE + V
Sbjct: 5 KTQFVCQNCGYHSPRFLGRCPNCGKWNTLVEEVLESESVNRQARVSFSGTHSKPERMSDV 64
Query: 171 RLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAI 230
+ E + Q+ NE+ RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++
Sbjct: 65 SMAEEPRVKTQM-----------NELNRVLGGGIVPGSLVLIGGDPGIGKSTLLLQVSGQ 113
Query: 231 IADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPR 290
++ V+YVSGEES QI RA R+ + ++ L+LY TD+ I ++ + P
Sbjct: 114 LSQTG-----GKVLYVSGEESANQIKMRAGRLNVHSDNLYLYPETDMHSIRNNIEEMKPE 168
Query: 291 ALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRV 350
++IDS+QT+ V + G + Q++E T+ L++ AK NI + + GHVTK G IAGP++
Sbjct: 169 YVVIDSVQTMSEPDVTSAVGSVSQIREVTAELMQIAKTNNITIFVVGHVTKGGAIAGPKI 228
Query: 351 LEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQH 410
LEH+VD VLY EG+ +YR+LR+VKNRFGST+ELG+FEM GLQ V NPS+IFL E+
Sbjct: 229 LEHMVDTVLYFEGDLHHTYRILRAVKNRFGSTNELGIFEMRDSGLQEVKNPSEIFLEERL 288
Query: 411 SDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQA 468
+D+ G ++ V M+G+R L+EIQAL R +G+ +R +I++VL K+A
Sbjct: 289 ADA---TGSSIVVSMEGTRPILVEIQALITPSVFGNAQRTASGLDRNRVSLIMAVLEKRA 345
Query: 469 GLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMV 528
L LQ +L GV L E A DLA+A +I SS+ + ++GEIGL GE+R V
Sbjct: 346 NLLLQNQDAYLKAAGGVKLDEPAIDLAMAISIASSYKDQGTDPTECYVGEIGLTGEIRRV 405
Query: 529 SRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+R+E+RV+ KLG+++ +PK+ + T ++E +G + E ++ +
Sbjct: 406 NRIEQRVAEATKLGFKRIFIPKNNLQGW-TPPTNEIEVVGVTTIGEALHKIL 456
>gi|293376926|ref|ZP_06623143.1| DNA repair protein RadA [Turicibacter sanguinis PC909]
gi|325842921|ref|ZP_08167794.1| DNA repair protein RadA [Turicibacter sp. HGF1]
gi|292644472|gb|EFF62565.1| DNA repair protein RadA [Turicibacter sanguinis PC909]
gi|325489523|gb|EGC91890.1| DNA repair protein RadA [Turicibacter sp. HGF1]
Length = 462
Score = 342 bits (876), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 189/476 (39%), Positives = 289/476 (60%), Gaps = 32/476 (6%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMK---RYSAGESDEGPVVQRTWL-PQKPEEV 167
+T++ C CG +W G C C +M + + E+ G V + PQK E+
Sbjct: 6 TKTSFFCQQCGMESLKWVGRCTGCGEWNSMVEELKPTKAEARRGFVASESMTKPQKLHEI 65
Query: 168 QPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQM 227
+ ++ M +L+ RVLGGG+V GSLVL GG+PG+GKSTLLLQ
Sbjct: 66 ETSEEARIHTSMSELN--------------RVLGGGIVRGSLVLCGGEPGIGKSTLLLQT 111
Query: 228 AAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPL 287
A +A + V+YVSGEES QI RA+R+ + ++ L++Y+ TD+ I ++Q L
Sbjct: 112 AQDLA-----AKNVRVLYVSGEESARQIKLRAERLGVVSDNLYIYAETDLTLIDRQIQQL 166
Query: 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAG 347
P +IIDSIQT+++ V + G + QV+ECT+ L++ AK I V + GHVTK G+IAG
Sbjct: 167 KPEFVIIDSIQTIHMPEVTSAPGSVSQVRECTAQLMKIAKIGGISVFIVGHVTKDGNIAG 226
Query: 348 PRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLS 407
PR+LEH+VD VLY EG++ +YR+LR+VKNRFGST+E+G+F+M + GL V+N S++FL
Sbjct: 227 PRLLEHMVDTVLYFEGDRHHTYRILRAVKNRFGSTNEIGIFDMKEEGLDEVTNASEVFLE 286
Query: 408 EQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLM 465
++ ++ L G A+ ++G+R L+EIQ+L S R +G+ +R +I++VL
Sbjct: 287 DR---TKGLPGTAIMASIEGTRPILVEIQSLLTPTSFGNPKRMASGVDHNRVSLILAVLE 343
Query: 466 KQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGEL 525
K+ G LQ ++ V GV L E A DLA+ A+I SS+ + P+G ++GE+GL GE+
Sbjct: 344 KRMGFFLQNQDTYVKVTGGVKLDEPAVDLAIVASIVSSYKDKMTPSGDVYMGEVGLTGEI 403
Query: 526 RMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQ-MEFIGCKNLKEVINVVF 580
R VSR+E+R+ KLG+ + ++PK K+L Q +E IG + + + V+F
Sbjct: 404 RRVSRIEERIKEAKKLGFTRAVIPK---KNLGGWTPPQGIEVIGVDTISDALKVMF 456
>gi|333394596|ref|ZP_08476415.1| DNA repair protein RadA [Lactobacillus coryniformis subsp.
coryniformis KCTC 3167]
Length = 456
Score = 342 bits (876), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 196/479 (40%), Positives = 288/479 (60%), Gaps = 39/479 (8%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRAC--------ESVGTMKRYSAGESD-EGPVVQRTWLPQK 163
+T +VC +CGY ++ G C C E + T K + +++ G V K
Sbjct: 5 KTQFVCQNCGYNSPRYLGRCPNCGAWNQMVEEKIATKKETTNAQANIAGHVA-------K 57
Query: 164 PEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTL 223
PE + V + + + QL E+ RVLGGG+VPGSLVLIGGDPG+GKSTL
Sbjct: 58 PELMAKVSIEKEPRVQTQLA-----------ELNRVLGGGIVPGSLVLIGGDPGIGKSTL 106
Query: 224 LLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEK 283
LLQ++ ++ + V+YVSGEES QI RA R+ +A ++L+LY TD+ I ++
Sbjct: 107 LLQVSGQLSQGKE-----KVLYVSGEESASQIKMRAGRLGVAGQQLYLYPETDMGSIRQQ 161
Query: 284 VQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSG 343
++ L P ++IDSIQT+ ++ + G + QV+E T++L+R AK+ I + + GHVTK G
Sbjct: 162 IESLKPDYVVIDSIQTMQEPDLSSAIGSVAQVREVTASLMRIAKQNQITIFIVGHVTKGG 221
Query: 344 DIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSK 403
IAGP++LEH+VD VLY EG++ +YR+LR+VKNRFGST+E+G+FEM GL V+NPS+
Sbjct: 222 AIAGPKILEHMVDTVLYFEGDQQRTYRILRAVKNRFGSTNEIGIFEMRAGGLHEVANPSE 281
Query: 404 IFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMII 461
IFL E+ + + G AV V ++G+R L+EIQAL R GI +RA +I+
Sbjct: 282 IFLEERLTGA---TGSAVVVSLEGTRPILVEIQALITPTVFGNAQRTTTGIDRNRAALIM 338
Query: 462 SVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGL 521
+VL K+A L LQ +L GV L E A DLAVA +I SS+ + F+GEIGL
Sbjct: 339 AVLEKRANLMLQNQDAYLKAAGGVKLDEPAIDLAVAVSITSSYRDKGTQATDCFVGEIGL 398
Query: 522 GGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
GE+R V+R+E+R++ AKLG+++ +P + K L ++ IG + E + F
Sbjct: 399 TGEVRSVNRIEQRINEAAKLGFKRVFIPHNNLKGLEVP--PTIKVIGVTTVAEALQKAF 455
>gi|420146256|ref|ZP_14653685.1| DNA repair protein radA [Lactobacillus coryniformis subsp.
coryniformis CECT 5711]
gi|398402035|gb|EJN55431.1| DNA repair protein radA [Lactobacillus coryniformis subsp.
coryniformis CECT 5711]
Length = 456
Score = 342 bits (876), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 196/480 (40%), Positives = 288/480 (60%), Gaps = 39/480 (8%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRAC--------ESVGTMKRYSAGESD-EGPVVQRTWLPQK 163
+T +VC +CGY ++ G C C E + T K + +++ G V K
Sbjct: 5 KTQFVCQNCGYNSPRYLGRCPNCGAWNQMVEEKIATKKETTNAQANIAGHVA-------K 57
Query: 164 PEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTL 223
PE + V + + + QL E+ RVLGGG+VPGSLVLIGGDPG+GKSTL
Sbjct: 58 PELMAKVSIEKEPRVQTQLA-----------ELNRVLGGGIVPGSLVLIGGDPGIGKSTL 106
Query: 224 LLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEK 283
LLQ++ ++ + V+YVSGEES QI RA R+ +A ++L+LY TD+ I ++
Sbjct: 107 LLQVSGQLSQGKE-----KVLYVSGEESASQIKMRAGRLGVAGQQLYLYPETDMGSIRQQ 161
Query: 284 VQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSG 343
++ L P ++IDSIQT+ ++ + G + QV+E T++L+R AK+ I + + GHVTK G
Sbjct: 162 IENLKPDYVVIDSIQTMQEPDLSSAIGSVAQVREVTASLMRIAKQNQITIFIVGHVTKGG 221
Query: 344 DIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSK 403
IAGP++LEH+VD VLY EG++ +YR+LR+VKNRFGST+E+G+FEM GL V+NPS+
Sbjct: 222 AIAGPKILEHMVDTVLYFEGDQQRTYRILRAVKNRFGSTNEIGIFEMRAGGLHEVANPSE 281
Query: 404 IFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMII 461
IFL E+ + + G AV V ++G+R L+EIQAL R GI +RA +I+
Sbjct: 282 IFLEERLTGA---TGSAVVVSLEGTRPILVEIQALITPTVFGNAQRTTTGIDRNRAALIM 338
Query: 462 SVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGL 521
+VL K+A L LQ +L GV L E A DLAVA +I SS+ + F+GEIGL
Sbjct: 339 AVLEKRANLMLQNQDAYLKAAGGVKLDEPAIDLAVAVSIASSYRDKGTQATDCFVGEIGL 398
Query: 522 GGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVFT 581
GE+R V+R+E+R++ AKLG+++ +P + K L ++ IG + E + F
Sbjct: 399 TGEVRSVNRIEQRINEAAKLGFKRVFIPHNNLKGLEVP--PTIKVIGVTTVAEALQKTFN 456
>gi|319891488|ref|YP_004148363.1| DNA repair protein RadA [Staphylococcus pseudintermedius HKU10-03]
gi|317161184|gb|ADV04727.1| DNA repair protein RadA [Staphylococcus pseudintermedius HKU10-03]
Length = 456
Score = 342 bits (876), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 192/471 (40%), Positives = 296/471 (62%), Gaps = 32/471 (6%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQ---KPEEVQP 169
+T + C+ CGY +W G C C + +M+ ES E Q+T P+ + ++
Sbjct: 5 KTIFECTACGYQSPKWMGKCPNCGAWNSME-----ESFE----QKTASPKHGVRAQKTSS 55
Query: 170 VRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAA 229
++ +++ ++L RI + E+ RVLGGG+V GSLVLIGGDPG+GKSTLLLQM A
Sbjct: 56 AKIQKLDDIKQELAPRIQTNS---GELNRVLGGGIVEGSLVLIGGDPGIGKSTLLLQMCA 112
Query: 230 IIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSP 289
L + V+Y++GEES+ Q RADR+ +L +++ TD+ I E V+ + P
Sbjct: 113 A------LSKEKRVLYITGEESLNQTKIRADRLDEDASQLNVFAETDLMVIHEAVKKVEP 166
Query: 290 RALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPR 349
+++DSIQT+Y ++ + G + QV+E T +L+ AK+ N+ + GHVTK G IAGPR
Sbjct: 167 DLIVVDSIQTIYHPEISSAPGSVSQVRESTQSLMHIAKQMNVATFIVGHVTKEGQIAGPR 226
Query: 350 VLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQ 409
+LEH+VD VLY EG++ +YR+LR+VKNRFGST+E+G+FEM Q GL++V NPS++FL E+
Sbjct: 227 LLEHMVDTVLYFEGDEHHAYRILRAVKNRFGSTNEMGIFEMKQSGLKSVLNPSEMFLEER 286
Query: 410 HSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVS---RHVNGIQASRADMIISVLMK 466
++ +AG + M+G+R LIE+QAL V+ +T + R GI +R ++++VL K
Sbjct: 287 TTN---VAGSTIVATMEGTRPLLIEVQAL-VTPTTFNNPRRMATGIDHNRLSLLMAVLEK 342
Query: 467 QAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELR 526
+ G LQ+ ++ V GV L+E A DL + A SSF + + +IGE+GL GE+R
Sbjct: 343 KEGYLLQQQDAYIKVAGGVKLSEPAVDLGIVIATASSFKDQAVDGFDCYIGEVGLTGEVR 402
Query: 527 MVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGF-EQMEFIGCKNLKEVI 576
VSR+E+RV AKLG+++ I+PK+ ++ F E +E IG ++ E +
Sbjct: 403 RVSRIEQRVQEAAKLGFKRVIIPKN---NIGGWHFPEGIEVIGVTSVNEAL 450
>gi|383116881|ref|ZP_09937629.1| DNA repair protein RadA [Bacteroides sp. 3_2_5]
gi|251947824|gb|EES88106.1| DNA repair protein RadA [Bacteroides sp. 3_2_5]
Length = 455
Score = 342 bits (876), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 190/476 (39%), Positives = 284/476 (59%), Gaps = 34/476 (7%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKP------EE 166
+T +VCS+C +W G C +C G Y +V++ ++P +
Sbjct: 5 KTVYVCSNCRQESPKWVGKCPSC---GEWNTYVE------EIVRKEVPNKRPVSGIESPK 55
Query: 167 VQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQ 226
+PV L E+ + P + E+ RVLGGGLVPGSLVLIGG+PG+GKSTL+LQ
Sbjct: 56 AKPVTLSEIEADEE------PRIDMHDEELNRVLGGGLVPGSLVLIGGEPGIGKSTLVLQ 109
Query: 227 MAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQP 286
+ + ++Y+SGEES Q+ RADR+ + + + T +E I ++
Sbjct: 110 TVLHMPERR-------ILYISGEESARQLKLRADRLTRTSSDCLIVCETSLEQIYVHIKN 162
Query: 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIA 346
P +IIDSIQT+ + S G + QV+EC++++LRFAK+T+ PVLL GH+ K G IA
Sbjct: 163 TRPDLVIIDSIQTISTESIESSPGSIAQVRECSASILRFAKETHTPVLLIGHINKEGSIA 222
Query: 347 GPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFL 406
GP+VLEHIVD VL EG++ YR+LRS+KNRFGST ELG++EM Q GL+ VSNPS++ L
Sbjct: 223 GPKVLEHIVDTVLQFEGDQHYMYRILRSIKNRFGSTAELGIYEMRQDGLRQVSNPSELLL 282
Query: 407 SEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVL 464
S+ H E ++G+A+A ++G R FLIE QAL S R G R +M+++VL
Sbjct: 283 SQDH---EGMSGVAIASAIEGVRPFLIETQALVSSAVYGNPQRSATGFDIRRMNMLLAVL 339
Query: 465 MKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGE 524
K+ G KL + +FLN+ G+ + + A DLAV +AI SS ++ I + GEIGL GE
Sbjct: 340 EKRVGFKLAQKDVFLNIAGGLKVNDPAIDLAVISAILSSNMDAAIEPEVCMAGEIGLSGE 399
Query: 525 LRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+R V+R+E+R+ KLG+++ I+PK + + T ++E + + ++E +F
Sbjct: 400 IRPVNRIEQRIGEAEKLGFKRFILPKYNMQGIDTKKL-RIELVPVRKVEEAFRTLF 454
>gi|51894263|ref|YP_076954.1| DNA repair protein RadA [Symbiobacterium thermophilum IAM 14863]
gi|51857952|dbj|BAD42110.1| DNA repair protein [Symbiobacterium thermophilum IAM 14863]
Length = 456
Score = 342 bits (876), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 194/474 (40%), Positives = 279/474 (58%), Gaps = 40/474 (8%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPE------ 165
+R+ + C +CGY +W G C C + TM E P R L P
Sbjct: 4 SRSAFFCQECGYESPRWMGRCPGCGAWNTMV-----EEPVNPPGGRGLLTSDPGTGGPPL 58
Query: 166 ---EVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKST 222
EV+ + GM +LD RVLGGG+VPGS VL+GGDPG+GKST
Sbjct: 59 AIGEVETEDAQRLETGMDELD--------------RVLGGGIVPGSFVLVGGDPGIGKST 104
Query: 223 LLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVE 282
LLLQ+AA +A H V+Y SGEES QI RADR+ L + + T++E I
Sbjct: 105 LLLQLAAGVARQH-----GTVLYASGEESARQIRMRADRLGTIHPRLLVLAETNLEAIAH 159
Query: 283 KVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKS 342
++PR LI+DSIQTV+ + + G + QV+EC + LLR AK N+ + + GHVTK
Sbjct: 160 HAAQVAPRLLIVDSIQTVFRPDLPSAPGSVSQVRECAAQLLRVAKGQNLAIFIVGHVTKE 219
Query: 343 GDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPS 402
G +AGPRVLEHIVD VLY EG++ +S+R+LR+VKNRFGST+E+G+FEM GL V N S
Sbjct: 220 GSLAGPRVLEHIVDTVLYFEGDRHASFRILRAVKNRFGSTNEIGIFEMRDAGLAPVGNAS 279
Query: 403 KIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVS--RHVNGIQASRADMI 460
++FL+E+ + +AG V M+G+R L+E+QAL + + V+ R GI +R +I
Sbjct: 280 QLFLAERPVE---VAGSVVMPAMEGTRPLLVEVQALVSASTFVTPRRTAEGIDLNRLQLI 336
Query: 461 ISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIG 520
I+VL K+ GL L + ++ V GV L E A DLA+A A+ SSF + P +GE+G
Sbjct: 337 IAVLEKRVGLLLGNHDAYVKVAGGVRLAEPAIDLALAVALASSFRDQPPDPRTVVVGEVG 396
Query: 521 LGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKE 574
L GE+R VSR+++R+ K+G+ + ++P++ +SL+ +E +G + + E
Sbjct: 397 LAGEVRAVSRIDQRIREAEKMGFDRMVLPRANLRSLSM--KTDVELVGVETVME 448
>gi|256848166|ref|ZP_05553610.1| DNA repair protein RadA [Lactobacillus coleohominis 101-4-CHN]
gi|256715226|gb|EEU30203.1| DNA repair protein RadA [Lactobacillus coleohominis 101-4-CHN]
Length = 457
Score = 342 bits (876), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 186/448 (41%), Positives = 275/448 (61%), Gaps = 32/448 (7%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQ-------RTWLPQKPE 165
+T++VC +CGY ++ G C C T+ E D+ + Q T + KP+
Sbjct: 5 KTHFVCQNCGYISPRFLGRCPNCGQWNTL----VEEVDQSTIKQPKTTTTTLTGIVAKPQ 60
Query: 166 EVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLL 225
+ + + + QL NE+ RVLGGG+VPGSLVLIGGDPG+GKSTLLL
Sbjct: 61 RINEIDTQKTPRVKTQL-----------NELNRVLGGGIVPGSLVLIGGDPGIGKSTLLL 109
Query: 226 QMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQ 285
Q++ ++ E V+YVSGEES QI RA R+ ++ ++ ++Y T+++ I +
Sbjct: 110 QVSGQLSQ-----EGHSVLYVSGEESANQIKIRAQRLDVSGDDFYIYPETNMDSIRATID 164
Query: 286 PLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDI 345
++P ++IDS+QT+ V + G + Q++ T+ L++ AK NI V + GHVTK G +
Sbjct: 165 EMNPEYVVIDSVQTMQATDVTSAIGSVAQIRAVTAQLMQIAKGKNITVFVVGHVTKGGVL 224
Query: 346 AGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIF 405
AGP++LEH+VD VLY EG+ +YR+LRSVKNRFGST+ELG+FEM+ GL+ V+NPS+IF
Sbjct: 225 AGPKILEHMVDTVLYFEGDLHHTYRILRSVKNRFGSTNELGIFEMNGTGLKEVANPSEIF 284
Query: 406 LSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISV 463
L E+ D+ G AV V ++G+R L+EIQAL R G+ +R +I++V
Sbjct: 285 LEERLKDA---TGSAVVVSLEGTRPILVEIQALITPSVFGNAQRTATGLSRNRVSLIMAV 341
Query: 464 LMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGG 523
L K+A L LQ +L GV L E A DLA+A AI SS+ + AF+GE+GL G
Sbjct: 342 LEKRANLLLQNQDAYLKAAGGVKLDEPAIDLAIAVAIASSYRDKGTKPTDAFVGEVGLTG 401
Query: 524 ELRMVSRMEKRVSTVAKLGYRKCIVPKS 551
E+R V+R+E+RV+ AKLG+++ +PK+
Sbjct: 402 EIRRVNRIEQRVAEAAKLGFKRIFIPKN 429
>gi|441499819|ref|ZP_20981992.1| DNA repair protein RadA [Fulvivirga imtechensis AK7]
gi|441436411|gb|ELR69782.1| DNA repair protein RadA [Fulvivirga imtechensis AK7]
Length = 459
Score = 342 bits (876), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 184/450 (40%), Positives = 278/450 (61%), Gaps = 37/450 (8%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTM-----KRYSAGESDEGPVV----QRTWLPQK 163
+T + C +CGY +W G C +C T KR SA + ++ +R P+K
Sbjct: 5 KTIYFCQNCGYESAKWLGKCPSCAMWNTFVEELAKRPSASDKNDWRSTSGGGKRASAPKK 64
Query: 164 PEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTL 223
EE+ + +N +L+ RVLGGG+VPGS+VLI G+PG+GKSTL
Sbjct: 65 IEEIAHEKEQRINSKNGELN--------------RVLGGGIVPGSVVLIAGEPGIGKSTL 110
Query: 224 LLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRM-MIATEELFLYSSTDIEDIVE 282
+LQ+A L V+YVSGEES +QI RADRM + E ++ + T ++I +
Sbjct: 111 MLQIA--------LSVNHKVLYVSGEESEQQIKMRADRMSQLHAAECYILAETSTQEIFQ 162
Query: 283 KVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKS 342
+V+ L+P LI+DS+QT+Y + +AG + QVK+CT+ L+++AK+T PV L GH+TK
Sbjct: 163 QVEKLNPDLLIVDSVQTLYSSNIESAAGSVSQVKQCTAELIKYAKETATPVFLVGHITKE 222
Query: 343 GDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPS 402
G IAGP+VLEH+VD VL EG++ +YR+LR+ KNRFGST ELG++EM GL+ VSNPS
Sbjct: 223 GAIAGPKVLEHMVDTVLQFEGDRHLTYRILRTTKNRFGSTSELGIYEMMGNGLREVSNPS 282
Query: 403 KIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMI 460
+I +S++ S+ L+G+ + ++G+R LIEIQ+L + + T R G A R +M+
Sbjct: 283 EILISQKDSE---LSGVTIGATVEGNRPLLIEIQSLVSTAAYGTPQRSSTGYDARRLNML 339
Query: 461 ISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIG 520
++VL K+ G +L +FLN+ G+ + + A DLAV +A+ SS E + + F E+G
Sbjct: 340 LAVLEKRCGFRLGLQDVFLNMAGGIKVEDPAIDLAVCSAVISSLEEISVSDKACFAAEVG 399
Query: 521 LGGELRMVSRMEKRVSTVAKLGYRKCIVPK 550
LGGELR V+R++ R++ KLG+++ V K
Sbjct: 400 LGGELRAVNRLDSRIAESEKLGFKEIYVSK 429
>gi|340620897|ref|YP_004739348.1| DNA repair protein sms-like protein [Capnocytophaga canimorsus Cc5]
gi|339901162|gb|AEK22241.1| DNA repair protein sms-like protein [Capnocytophaga canimorsus Cc5]
Length = 452
Score = 341 bits (875), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 187/472 (39%), Positives = 287/472 (60%), Gaps = 29/472 (6%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWL-PQ-KPEEVQPV 170
+T + C CG +W G C C+ T+ +++E ++ W P+ KP++V+ +
Sbjct: 5 KTAYFCQHCGTQYSKWQGQCYGCKQWNTIVE-EVVQTEE----KKAWQEPEAKPKKVKYI 59
Query: 171 RLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAI 230
L E++ + R+ + NE+ VLGGGLVPGS+ L+GG+PG+GKSTLLLQ+A
Sbjct: 60 SLSEIDSAQ---ETRLKTNN---NELDNVLGGGLVPGSVTLLGGEPGIGKSTLLLQIA-- 111
Query: 231 IADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPR 290
L P +YVSGEES +QI RADR+ T ++ + + I ++++ L P+
Sbjct: 112 ------LNLPYKTLYVSGEESEKQIKMRADRIKKNTGNCYVLTEIKTQHIFQQIKELKPQ 165
Query: 291 ALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRV 350
LIIDSIQT+ + SAG + Q++ECTS L++FAK T++PV+L GH+TK G IAGP++
Sbjct: 166 ILIIDSIQTLQSDYIEASAGSVSQIRECTSELIKFAKTTHVPVILIGHITKDGHIAGPKI 225
Query: 351 LEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQH 410
LEH+VD VL EG++ YR+LR++KNRFGST ELG+FEM GL+ V+NPS++ +S+
Sbjct: 226 LEHMVDTVLQFEGDRNHVYRILRALKNRFGSTSELGIFEMLGDGLREVNNPSEVLISKTE 285
Query: 411 SDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQA 468
E ++G A+A ++G R +IEIQAL + T R G A R +M+++VL K+A
Sbjct: 286 ---ETISGTAIAATLEGMRPLMIEIQALVSTAVYGTPQRSATGFNAKRLNMLLAVLEKRA 342
Query: 469 GLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMV 528
G +L +FLN+ G L + A DL V AI SS + I + F EIGLGGE+R V
Sbjct: 343 GFRLGAKDVFLNITGGFTLDDPATDLGVVMAILSSNEDIAIEKNVCFAAEIGLGGEVRPV 402
Query: 529 SRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
R+E+R++ KLG+ + K ++ ++ ++ + ++E I ++F
Sbjct: 403 QRVEQRITEAEKLGFETIFISKYSKLAIKNPA---IKVVKVAKIEEAIQILF 451
>gi|410593817|ref|YP_006950544.1| DNA repair protein RadA [Streptococcus agalactiae SA20-06]
gi|410517456|gb|AFV71600.1| DNA repair protein RadA [Streptococcus agalactiae SA20-06]
Length = 454
Score = 341 bits (875), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 191/470 (40%), Positives = 279/470 (59%), Gaps = 26/470 (5%)
Query: 116 WVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRLLEV 175
+ C +CGY ++ G C C + + + + V +P +++ V +
Sbjct: 8 FTCQECGYQSPKYLGRCPNCSAWSSFVEEVEVQEVKNARVSLNGEKSRPTKLKDVSSINY 67
Query: 176 NKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVH 235
++ +D E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ +A+
Sbjct: 68 SRTKTDMD-----------EFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLAN-- 114
Query: 236 DLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIID 295
V+YVSGEES EQI R++R+ E +LY+ T+++ I +++ + P LIID
Sbjct: 115 ----KGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQSIRSEIEKIKPDFLIID 170
Query: 296 SIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIV 355
SIQT+ V+ G + QV+E T+ L++ AK NI + GHVTK G +AGPR+LEH+V
Sbjct: 171 SIQTIMSPEVSSVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTLAGPRMLEHMV 230
Query: 356 DAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEF 415
D VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS++FL E+ +
Sbjct: 231 DTVLYFEGERHHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGA-- 288
Query: 416 LAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGLKLQ 473
G A+ V M+G+R L E+QAL R G+ +R +I++VL + GL LQ
Sbjct: 289 -TGSAIVVTMEGTRPILAEVQALVTPTVFGNAKRTTTGLDFNRVSLIMAVLENRCGLLLQ 347
Query: 474 ENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEK 533
+L GV L E A DLAVA AI SS+ E P +FIGEIGL GE+R V+R+E+
Sbjct: 348 NQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTNPQESFIGEIGLTGEIRRVTRIEQ 407
Query: 534 RVSTVAKLGYRKCIVPKSAEKSLATLGFEQ-MEFIGCKNLKEVINVVFTT 582
R++ +KLG+ K PK+ SLA + + ++ IG + +V+ VF+T
Sbjct: 408 RINEASKLGFTKIYSPKN---SLAGIEIPKGIDVIGVTTVSQVLKAVFST 454
>gi|94543216|gb|ABF33264.1| DNA repair protein RadA [Streptococcus pyogenes MGAS10270]
Length = 453
Score = 341 bits (875), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 193/472 (40%), Positives = 283/472 (59%), Gaps = 26/472 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+ ++C +CGY ++ G C C + + + + V E+ +PV+L
Sbjct: 5 KATFICQECGYQSPKYLGRCPNCSAWSSFVEEVEVKEVKNARVSLAG-----EKSRPVKL 59
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
+V+ + + + + +E RVLGGG+VPGSL+LIGGDPG+GKSTLLLQ++ +A
Sbjct: 60 KDVDN----ISYHRTQTDM--SEFNRVLGGGVVPGSLILIGGDPGIGKSTLLLQVSTQLA 113
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+ V+Y SGEES EQI R++R+ E +LY+ T+++ I +++ + P L
Sbjct: 114 N------KGTVLYASGEESAEQIKLRSERLGDIDNEFYLYAETNMQAIRTEIENIKPDFL 167
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQT+ + G G + QV+E T+ L++ AK NI + GHVTK G +AGPR+LE
Sbjct: 168 IIDSIQTIMSPDITGVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTLAGPRMLE 227
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS++FL E+
Sbjct: 228 HMVDTVLYFEGERHHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDG 287
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
+ G AV V M+GSR L E+Q+L R G+ +R +I++VL K+ GL
Sbjct: 288 A---TGSAVVVTMEGSRPILAEVQSLVTPTVFGNARRTTTGLDFNRVSLIMAVLEKRCGL 344
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ +L GV L E A DLAVA AI SS+ E P AF+GEIGL GE+R V+R
Sbjct: 345 LLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTSPQEAFLGEIGLTGEIRRVTR 404
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQ-MEFIGCKNLKEVINVVFT 581
+E+R++ AKLG+ K PK+A L + Q +E +G + +V+ VF+
Sbjct: 405 IEQRINEAAKLGFTKVYAPKNA---LQGIDIPQGIEVVGVTTVDQVLKAVFS 453
>gi|315608142|ref|ZP_07883134.1| DNA repair protein RadA [Prevotella buccae ATCC 33574]
gi|315250111|gb|EFU30108.1| DNA repair protein RadA [Prevotella buccae ATCC 33574]
Length = 480
Score = 341 bits (875), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 187/490 (38%), Positives = 288/490 (58%), Gaps = 35/490 (7%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPV- 170
++ +VC++CG +W G C +C T K + G + + + +
Sbjct: 4 DKIAYVCNNCGQESPKWVGKCPSCGQWNTFKEIRISGDNGGEAARHAAMTLRHGGAASMF 63
Query: 171 ------RLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLL 224
R +++ Q + RI + NE+ RVLGGG+VPGS++L+GG+PG+GKSTL
Sbjct: 64 GGRGSGRTIKLRDISSQAEPRIDM---HDNELNRVLGGGMVPGSIILLGGEPGIGKSTLT 120
Query: 225 LQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRM------------MIATEELFLY 272
LQ + D ++YVSGEES QI RA+R+ A + + +
Sbjct: 121 LQTILSMGD-------RQILYVSGEESEHQIKLRAERIAAGITTSQEHTGQAAGDNISIL 173
Query: 273 SSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIP 332
T +E I E ++ + P ++IDSIQT+ V S G + QV+EC ++LLRFAK + +P
Sbjct: 174 CETSLEKIFENIKEVKPEIIVIDSIQTISTDQVDSSPGSITQVRECAASLLRFAKTSGVP 233
Query: 333 VLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQ 392
V+L GH+ K G +AGP++LEHIVD V+ EG++ YR+LRS+KNRFGST ELG++EM Q
Sbjct: 234 VILIGHINKEGTLAGPKILEHIVDTVIQFEGDQHYMYRILRSIKNRFGSTSELGIYEMQQ 293
Query: 393 LGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVN 450
GL+ V+NPS++ L+E + E L+G+A++ ++G R FL+E QAL S + T R
Sbjct: 294 SGLRPVANPSELLLTE---NREGLSGIAISSAIEGVRPFLVETQALVSSAAYGTPQRSAT 350
Query: 451 GIQASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIP 510
G R +M+++VL K+ G KL + +FLN+ G+ +T+ A DL+V AA+ SS ++ I
Sbjct: 351 GFDQRRLNMLLAVLEKRVGFKLMQKDVFLNIAGGLRVTDLAMDLSVIAAVLSSNVDTAIE 410
Query: 511 NGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCK 570
NG GE+GL GE+R VSR+E+R++ KLG+R I+PK+ F Q+E +
Sbjct: 411 NGWCMAGEVGLSGEVRPVSRIEQRIAEAEKLGFRHIIIPKNNHNGFDHRKF-QIEIHPVR 469
Query: 571 NLKEVINVVF 580
++E + V+F
Sbjct: 470 KVEEALRVLF 479
>gi|402304673|ref|ZP_10823738.1| DNA repair protein RadA [Prevotella sp. MSX73]
gi|400380800|gb|EJP33610.1| DNA repair protein RadA [Prevotella sp. MSX73]
Length = 480
Score = 341 bits (875), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 187/490 (38%), Positives = 288/490 (58%), Gaps = 35/490 (7%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPV- 170
++ +VC++CG +W G C +C T K + G + + + +
Sbjct: 4 DKIAYVCNNCGQESPKWVGKCPSCGQWNTFKEIRISGDNGGEAARHAAMTLRHGGAASMF 63
Query: 171 ------RLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLL 224
R +++ Q + RI + NE+ RVLGGG+VPGS++L+GG+PG+GKSTL
Sbjct: 64 GGRGSGRTIKLRDISSQAEPRIDM---HDNELNRVLGGGMVPGSIILLGGEPGIGKSTLT 120
Query: 225 LQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRM------------MIATEELFLY 272
LQ + D ++YVSGEES QI RA+R+ A + + +
Sbjct: 121 LQTILSMGD-------RQILYVSGEESEHQIKLRAERIAAGITTSQKHTGQAAGDNISIL 173
Query: 273 SSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIP 332
T +E I E ++ + P ++IDSIQT+ V S G + QV+EC ++LLRFAK + +P
Sbjct: 174 CETSLEKIFENIKEVKPEIIVIDSIQTISTDQVDSSPGSITQVRECAASLLRFAKTSGVP 233
Query: 333 VLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQ 392
V+L GH+ K G +AGP++LEHIVD V+ EG++ YR+LRS+KNRFGST ELG++EM Q
Sbjct: 234 VILIGHINKEGTLAGPKILEHIVDTVIQFEGDQHYMYRILRSIKNRFGSTSELGIYEMQQ 293
Query: 393 LGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVN 450
GL+ V+NPS++ L+E + E L+G+A++ ++G R FL+E QAL S + T R
Sbjct: 294 SGLRPVANPSELLLTE---NREGLSGIAISSAIEGVRPFLVETQALVSSAAYGTPQRSAT 350
Query: 451 GIQASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIP 510
G R +M+++VL K+ G KL + +FLN+ G+ +T+ A DL+V AA+ SS ++ I
Sbjct: 351 GFDQRRLNMLLAVLEKRVGFKLMQKDVFLNIAGGLRVTDLAMDLSVIAAVLSSNVDTAIE 410
Query: 511 NGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCK 570
NG GE+GL GE+R VSR+E+R++ KLG+R I+PK+ F Q+E +
Sbjct: 411 NGWCMAGEVGLSGEVRPVSRIEQRIAEAEKLGFRHIIIPKNNHNGFDHRKF-QIEIHPVR 469
Query: 571 NLKEVINVVF 580
++E + V+F
Sbjct: 470 KVEEALRVLF 479
>gi|257081383|ref|ZP_05575744.1| DNA repair protein RadA [Enterococcus faecalis E1Sol]
gi|256989413|gb|EEU76715.1| DNA repair protein RadA [Enterococcus faecalis E1Sol]
Length = 456
Score = 341 bits (875), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 202/477 (42%), Positives = 279/477 (58%), Gaps = 30/477 (6%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQP 169
K + + C CGY ++ G C C +M ++ +R + ++ QP
Sbjct: 3 KKAKVQFECQSCGYVSPKYLGRCPNCGQWNSMVEEVIQDTSN----RRARVSLTGKKTQP 58
Query: 170 VRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAA 229
RL EV + + + R+ + E+ RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++
Sbjct: 59 QRLSEV---VPKKEPRVKTELV---ELNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSQ 112
Query: 230 IIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSP 289
+A V+YVSGEES EQI RA+R+ E +LY+ TD+ +I ++ L P
Sbjct: 113 QLAATG-----GTVLYVSGEESAEQIKLRAERLGTVNETFYLYAETDMHEISRAIEKLEP 167
Query: 290 RALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPR 349
+IIDSIQT+ V AG + QV+E T+ LL+ AK I + + GHVTK G IAGPR
Sbjct: 168 DYVIIDSIQTMTQPDVTSVAGSVSQVRETTAELLKLAKTNGIAIFIVGHVTKEGSIAGPR 227
Query: 350 VLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQ 409
+LEH+VD VLY EG+K ++R+LR+VKNRFGST+E+G+FEM GL V NPS++FL E+
Sbjct: 228 MLEHMVDTVLYFEGDKHHTFRILRAVKNRFGSTNEIGIFEMQTHGLVEVMNPSQVFLEER 287
Query: 410 HSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQ 467
E G ++ V M+GSR L+EIQAL R G+ +R +I++VL K+
Sbjct: 288 L---EGATGSSIVVAMEGSRPILVEIQALVTPTMFGNAKRTTTGLDFNRVSLIMAVLEKR 344
Query: 468 AGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRM 527
AGL LQ +L GV + E A DLA+A +I SS+ E + FIGEIGL GE+R
Sbjct: 345 AGLLLQNQDAYLKAAGGVKINEPAIDLALAISIASSYKEKGTSSSECFIGEIGLTGEIRR 404
Query: 528 VSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGF----EQMEFIGCKNLKEVINVVF 580
V+ +E+RV KLG+ K VPK+ LG E +E IG + E + VF
Sbjct: 405 VNSIEQRVREAQKLGFTKVYVPKN------NLGGWEAPEGIEIIGVSTIGETLRKVF 455
>gi|386320170|ref|YP_006016333.1| DNA repair protein RadA [Staphylococcus pseudintermedius ED99]
gi|323465341|gb|ADX77494.1| DNA repair protein RadA [Staphylococcus pseudintermedius ED99]
Length = 456
Score = 341 bits (875), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 192/471 (40%), Positives = 296/471 (62%), Gaps = 32/471 (6%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQ---KPEEVQP 169
+T + C+ CGY +W G C C + +M+ ES E Q+T P+ + ++
Sbjct: 5 KTIFECTACGYQSPKWMGKCPNCGAWNSME-----ESFE----QKTASPKHGVRAQKTSS 55
Query: 170 VRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAA 229
++ +++ ++L RI + E+ RVLGGG+V GSLVLIGGDPG+GKSTLLLQM A
Sbjct: 56 AKIQKLDDIKQELAPRIQTNS---GELNRVLGGGIVEGSLVLIGGDPGIGKSTLLLQMCA 112
Query: 230 IIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSP 289
L + V+Y++GEES+ Q RADR+ +L +++ TD+ I E V+ + P
Sbjct: 113 A------LSKEKRVLYITGEESLNQTKIRADRLDEDASQLNVFAETDLMVIHEAVKKVEP 166
Query: 290 RALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPR 349
+++DSIQT+Y ++ + G + QV+E T +L+ AK+ N+ + GHVTK G IAGPR
Sbjct: 167 DLIVVDSIQTIYHPEISSAPGSVSQVRESTQSLMHIAKQMNVATFIVGHVTKEGQIAGPR 226
Query: 350 VLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQ 409
+LEH+VD VLY EG++ +YR+LR+VKNRFGST+E+G+FEM Q GL++V NPS++FL E+
Sbjct: 227 LLEHMVDTVLYFEGDEHHAYRILRAVKNRFGSTNEMGIFEMKQSGLKSVLNPSEMFLEER 286
Query: 410 HSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVS---RHVNGIQASRADMIISVLMK 466
++ +AG + M+G+R LIE+QAL V+ +T + R GI +R ++++VL K
Sbjct: 287 TTN---VAGSTIVATMEGTRPLLIEVQAL-VTPTTFNNPRRMATGIDHNRLSLLMAVLEK 342
Query: 467 QAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELR 526
+ G LQ+ ++ V GV L+E A DL + A SSF + + +IGE+GL GE+R
Sbjct: 343 KEGYLLQQQDAYIKVAGGVKLSEPAVDLGIVIATASSFKDQAVDGLDCYIGEVGLTGEVR 402
Query: 527 MVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGF-EQMEFIGCKNLKEVI 576
VSR+E+RV AKLG+++ I+PK+ ++ F E +E IG ++ E +
Sbjct: 403 RVSRIEQRVQEAAKLGFKRVIIPKN---NIGGWHFPEGIEVIGVTSVNEAL 450
>gi|421532291|ref|ZP_15978656.1| DNA repair protein RadA [Streptococcus agalactiae STIR-CD-17]
gi|403642464|gb|EJZ03306.1| DNA repair protein RadA [Streptococcus agalactiae STIR-CD-17]
Length = 454
Score = 341 bits (875), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 190/470 (40%), Positives = 279/470 (59%), Gaps = 26/470 (5%)
Query: 116 WVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRLLEV 175
+ C +CGY ++ G C C + + + + V +P +++ V +
Sbjct: 8 FTCQECGYQSPKYLGRCPNCSAWSSFVEEVEVQEVKNARVSLNGEKSRPTKLKDVSSINY 67
Query: 176 NKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVH 235
++ +D E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ +A+
Sbjct: 68 SRTKTDMD-----------EFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLAN-- 114
Query: 236 DLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIID 295
V+YVSGEES EQI R++R+ E +LY+ T+++ I +++ + P LIID
Sbjct: 115 ----KGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQSIRSEIEKIKPDFLIID 170
Query: 296 SIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIV 355
SIQT+ ++ G + QV+E T+ L++ AK NI + GHVTK G +AGPR+LEH+V
Sbjct: 171 SIQTIMSPEISSVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTLAGPRMLEHMV 230
Query: 356 DAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEF 415
D VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS++FL E+ +
Sbjct: 231 DTVLYFEGERHHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGA-- 288
Query: 416 LAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGLKLQ 473
G A+ V M+G+R L E+QAL R G+ +R +I++VL + GL LQ
Sbjct: 289 -TGSAIVVTMEGTRPILAEVQALVTPTVFGNAKRTTTGLDFNRVSLIMAVLENRCGLLLQ 347
Query: 474 ENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEK 533
+L GV L E A DLAVA AI SS+ E P +FIGEIGL GE+R V+R+E+
Sbjct: 348 NQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTNPQESFIGEIGLTGEIRRVTRIEQ 407
Query: 534 RVSTVAKLGYRKCIVPKSAEKSLATLGFEQ-MEFIGCKNLKEVINVVFTT 582
R++ +KLG+ K PK+ SLA + + ++ IG + +V+ VF+T
Sbjct: 408 RINEASKLGFTKIYAPKN---SLAGIEIPKGIDVIGVTTVSQVLKAVFST 454
>gi|166030653|ref|ZP_02233482.1| hypothetical protein DORFOR_00319 [Dorea formicigenerans ATCC
27755]
gi|166029655|gb|EDR48412.1| DNA repair protein RadA [Dorea formicigenerans ATCC 27755]
Length = 456
Score = 341 bits (875), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 190/474 (40%), Positives = 292/474 (61%), Gaps = 24/474 (5%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQR--TWLPQKPEEV 167
K ++ + C +CG+ + +W G C C+ T +E V R T Q+ +
Sbjct: 3 KGKKSIFFCQNCGHEESKWLGQCPMCKEWNTF-------VEEKVSVTRGNTAAVQQVRDA 55
Query: 168 QPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQM 227
+ +++ ++ D R+ +G+ E+ RVLGGG+VPGSLVL+GGDPG+GKSTLLLQ+
Sbjct: 56 KDAKVVTLSSITTDDDERMQ-TGIL--ELDRVLGGGIVPGSLVLVGGDPGIGKSTLLLQV 112
Query: 228 AAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPL 287
++ G+ ++Y+SGEES++QI RA+RM +E LFL T++ I ++
Sbjct: 113 CQKLS-----GQSRKILYISGEESLKQIKLRANRMGTFSESLFLLCETNLGIIRHVIEEQ 167
Query: 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAG 347
P ++IDSIQT+Y VA + G + QV+E T+ ++ AK NI + + GHVTK G +AG
Sbjct: 168 HPDMVVIDSIQTMYNEEVASAPGSVSQVRESTNVFMQLAKGLNISIFIVGHVTKEGTVAG 227
Query: 348 PRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLS 407
PRVLEH+VD VLY EG++ +SYR+LR VKNRFGST+E+GVFEM + GL V NPS+ LS
Sbjct: 228 PRVLEHMVDTVLYFEGDRHASYRILRGVKNRFGSTNEIGVFEMQKGGLVEVENPSEYMLS 287
Query: 408 EQHSDSEFLAGLAVAVIMDGSRSFLIEIQAL-CVSGSTVSRHV-NGIQASRADMIISVLM 465
+ ++ +G VA M+G+R L+EIQAL C + + R G+ +R +++++VL
Sbjct: 288 GKPENA---SGSVVACAMEGTRPMLMEIQALVCKTNFGMPRRTAAGLDYNRVNLLMAVLE 344
Query: 466 KQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGEL 525
K+ G+ L ++N+ G+ L E A DL + AI SS+ PI GE+GL GE+
Sbjct: 345 KRMGMPLSAYDAYVNIAGGIRLNEPAADLGIVMAIASSYKNRPIDEDTIVFGEVGLSGEV 404
Query: 526 RMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVV 579
R V+ E+RVS KLG+++CIVP + K++ + E +E +G +N+ + +N+V
Sbjct: 405 RAVTMPEQRVSEAKKLGFKRCIVPAVSMKTIGKM--EGIEILGVENVNQAMNLV 456
>gi|46445907|ref|YP_007272.1| DNA repair protein RadA [Candidatus Protochlamydia amoebophila
UWE25]
gi|46399548|emb|CAF22997.1| probable DNA repair [Candidatus Protochlamydia amoebophila UWE25]
Length = 456
Score = 341 bits (875), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 189/471 (40%), Positives = 276/471 (58%), Gaps = 21/471 (4%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVR 171
+T W CS+CG+ +W G C +C + T + S +T + +P +++ V+
Sbjct: 4 QKTVWYCSECGHKQLKWLGQCPSCTNWNTFQEELELSSLPKRFESQTAITTRPIKLKEVK 63
Query: 172 LLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAII 231
L E + ++ E R+LGGGLVPGSL L+GGDPG+GKSTL+LQ++ +
Sbjct: 64 LQETPRIQTKI-----------GECDRLLGGGLVPGSLTLVGGDPGIGKSTLMLQLSYAL 112
Query: 232 ADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRA 291
A + V+Y+ GEESV+Q RA+R+ I T+ LFL S T+ I ++ L+P
Sbjct: 113 AK-----QGLIVLYICGEESVDQTSLRANRLGIQTDNLFLLSETNFSLIKSQIDQLNPDV 167
Query: 292 LIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVL 351
LI+DSIQ VY + + G + QV+E T+ + AK I L GHVTKSG+IAGPRVL
Sbjct: 168 LIVDSIQIVYKSEITSAPGSVTQVRETTTEFMHLAKGRGISTFLIGHVTKSGEIAGPRVL 227
Query: 352 EHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHS 411
EH+VD VLY EG+K YR++R VKNRFG TDE+ VF+M Q GL V NPS+IFL E+
Sbjct: 228 EHLVDTVLYFEGDKQHHYRMIRVVKNRFGPTDEIAVFQMKQSGLVEVPNPSEIFLEERRK 287
Query: 412 DSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAG 469
DS G + ++GSR LIE+QAL ST SR G+ +R ++++VL K+ G
Sbjct: 288 DS---IGSVIIPTLEGSRPILIEVQALVTQTVFSTPSRRCTGLDQNRLALLLAVLEKRMG 344
Query: 470 LKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVS 529
+L + +F++V G+ + E A DL + A SS I +GE+GLGGE+R VS
Sbjct: 345 YQLHKCDVFVSVAGGLRIIEPAIDLGLLLASASSMRNSIIDPETTVVGEVGLGGEIRSVS 404
Query: 530 RMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
R+E R+ +G+R+CI+PK K +A ++ G + ++E I+ +
Sbjct: 405 RIESRLKEAIHMGFRRCIIPKRNAKGIAEDILRKIVVQGVEFVEEAIDALL 455
>gi|329961794|ref|ZP_08299808.1| DNA repair protein RadA [Bacteroides fluxus YIT 12057]
gi|328531234|gb|EGF58078.1| DNA repair protein RadA [Bacteroides fluxus YIT 12057]
Length = 455
Score = 341 bits (875), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 192/470 (40%), Positives = 282/470 (60%), Gaps = 22/470 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T +VCS+CG +W G C +C G Y + V +R + + +PV L
Sbjct: 5 KTVYVCSNCGQESPKWIGKCPSC---GEWNTYVEETIRKETVNKRPVSGIETAKAKPVTL 61
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
E+ + P L E+ RVLGGGLV GSLVLIGG+PG+GKSTL+LQ I
Sbjct: 62 NEIIADDE------PRIDLHDAELNRVLGGGLVQGSLVLIGGEPGIGKSTLVLQTVLQIP 115
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+ ++Y+SGEES Q+ RADR+ + + + T +E I ++ P +
Sbjct: 116 E-------KRILYISGEESARQLKLRADRLTNISNDCLIVCETSLEQIYVHIKNTHPDLV 168
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQT+ + S G + QV+EC++++LRFAK+T+ PV+L GH+ K G IAGP+VLE
Sbjct: 169 IIDSIQTISTETLESSPGSIAQVRECSASILRFAKETHTPVILIGHINKEGSIAGPKVLE 228
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
HIVD VL EG++ YR+LRS+KNRFGST ELG++EM Q GL+ V+NPS++ LS+ H
Sbjct: 229 HIVDTVLQFEGDQHYMYRILRSIKNRFGSTAELGIYEMRQDGLRQVNNPSELLLSQDH-- 286
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
E ++G+A+A ++G R FLIE QAL S R G R +M+++VL K+ G
Sbjct: 287 -EGMSGIAIASAIEGIRPFLIETQALVSSAVYGNPQRSATGFDIRRMNMLLAVLEKRVGF 345
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
KL + +FLN+ G+ + + A DLAV +AI SS ++ I + GEIGL GE+R V+R
Sbjct: 346 KLAQKDVFLNIAGGLKVNDPAIDLAVISAILSSNMDSAIEPEVCMAGEIGLSGEIRPVNR 405
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+E+R+ KLG+++ I+PK + L T ++E I + ++E +F
Sbjct: 406 IEQRIGEAEKLGFKQFILPKYNMQGLNTQKI-KIELIPVRKVEEAFRTLF 454
>gi|420149274|ref|ZP_14656452.1| DNA repair protein RadA [Capnocytophaga sp. oral taxon 335 str.
F0486]
gi|394753883|gb|EJF37359.1| DNA repair protein RadA [Capnocytophaga sp. oral taxon 335 str.
F0486]
Length = 454
Score = 341 bits (875), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 181/440 (41%), Positives = 271/440 (61%), Gaps = 20/440 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T + C +CG +W G C C+ T+ + D P Q P K + + + +
Sbjct: 5 KTAYFCQNCGAQYSKWQGQCYVCKQWNTIVE-EVVQKDTAPAWQEKESPIKSKAPKYISI 63
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
+++ Q + R+ + +E+ VLGGG+VPGS+ L+GG+PG+GKSTLLLQ+A
Sbjct: 64 SQIDT---QHEARLNSNN---HELNNVLGGGIVPGSVTLLGGEPGIGKSTLLLQIA---- 113
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
L P +YVSGEES +QI RADR+ + F+ + T ++I ++++ L P +
Sbjct: 114 ----LNLPYRTLYVSGEESEKQIKMRADRIPHKLDNCFILTETKTQNIFQQIKELLPEIV 169
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQT+ + SAG + Q++ECTS L++FAK T+ PV+L GH+TK G IAGP++LE
Sbjct: 170 IIDSIQTLQSDYIEASAGSISQIRECTSELIKFAKTTHTPVILIGHITKDGQIAGPKILE 229
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VL EG++ YR+LRS+KNRFGST ELG++EM GL+ V+NPS+I +S+
Sbjct: 230 HMVDTVLQFEGDRNHVYRILRSLKNRFGSTSELGIYEMLSNGLREVNNPSEILISK---T 286
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
E ++G ++A ++G R +IEIQAL + T R G A R +M+++VL K+AG
Sbjct: 287 DETISGTSIAATLEGMRPLMIEIQALVSTAVYGTPQRSTTGFNAKRLNMLLAVLEKRAGF 346
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
+L +FLN+ G+ + + A DL VA AI SS + I + F GE+GLGGE+R V R
Sbjct: 347 RLGAKDVFLNITGGITIDDPATDLGVAMAILSSNEDIAIEKDVCFAGEVGLGGEIRPVQR 406
Query: 531 MEKRVSTVAKLGYRKCIVPK 550
+E+R++ KLG+ V K
Sbjct: 407 VEQRITEAEKLGFNTIFVSK 426
>gi|282877061|ref|ZP_06285904.1| DNA repair protein RadA [Prevotella buccalis ATCC 35310]
gi|281300832|gb|EFA93158.1| DNA repair protein RadA [Prevotella buccalis ATCC 35310]
Length = 478
Score = 341 bits (875), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 186/441 (42%), Positives = 274/441 (62%), Gaps = 23/441 (5%)
Query: 116 WVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQ---KPEEVQPVRL 172
+VCS+CG +W G C C T K G SD R+ + E+ +P+RL
Sbjct: 25 YVCSNCGQDSPKWMGKCPNCGQWNTFKEIRIG-SDTSQSTARSVVNAFKGNTEKNKPLRL 83
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
K + LD P + +E+ RVLGGGLV GS+ L+GG+PG+GKSTL LQ +
Sbjct: 84 ----KDISTLDE--PRIDMHDDELNRVLGGGLVSGSITLLGGEPGIGKSTLTLQTILQMT 137
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIA-TEELFLYSSTDIEDIVEKVQPLSPRA 291
D V+YVSGEES Q+ RA+R+ A ++ + + T +E I E+++ + P
Sbjct: 138 D-------KRVLYVSGEESAHQLKMRAERLSKAESDHVVILCETSLELIFEQIKTVKPEL 190
Query: 292 LIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVL 351
++IDSIQT+ V S G + QV+EC + LL FAK + IPV+L GH+ K G +AGP++L
Sbjct: 191 VVIDSIQTIATEHVESSPGSISQVRECAALLLHFAKNSGIPVILIGHINKEGTLAGPKIL 250
Query: 352 EHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHS 411
EHIVD V+ EG++ YR+LR++KNRFGST ELG++EM Q GL+ VSNPS++ L++ H
Sbjct: 251 EHIVDTVIQFEGDQHYIYRILRAIKNRFGSTSELGIYEMQQDGLRQVSNPSELLLTQDH- 309
Query: 412 DSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMKQAG 469
+ L+G+A++ ++G R FL+E QAL S + T R G R +M+++VL K+ G
Sbjct: 310 --DGLSGIAISSAIEGVRPFLLETQALVSSAAYGTPQRSATGFDQRRLNMLLAVLEKRVG 367
Query: 470 LKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVS 529
KL + +FLN+ G+ +T+ A DL+V AA+ SS ++ PI +G GE+GL GE+R VS
Sbjct: 368 FKLMQKDVFLNIAGGLRVTDLAMDLSVIAAVLSSNVDTPIESGWCMAGEVGLSGEVRPVS 427
Query: 530 RMEKRVSTVAKLGYRKCIVPK 550
R+E+R++ KLG+ I+PK
Sbjct: 428 RIEQRIAEAEKLGFTHLILPK 448
>gi|256960777|ref|ZP_05564948.1| DNA repair protein RadA [Enterococcus faecalis Merz96]
gi|256951273|gb|EEU67905.1| DNA repair protein RadA [Enterococcus faecalis Merz96]
Length = 456
Score = 341 bits (875), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 202/477 (42%), Positives = 280/477 (58%), Gaps = 30/477 (6%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQP 169
K + + C CGY ++ G C C +M ++ + +R + ++ QP
Sbjct: 3 KKAKVQFECQSCGYVSPKYLGRCPNCGQWNSMVEEVIQDTSD----RRARVSLTGKKTQP 58
Query: 170 VRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAA 229
RL EV + + + R+ + E+ RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++
Sbjct: 59 QRLSEV---VPKKEPRVKTELV---ELNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSQ 112
Query: 230 IIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSP 289
+A V+YVSGEES EQI RA+R+ E +LY+ TD+ +I ++ L P
Sbjct: 113 QLAATG-----GTVLYVSGEESAEQIKLRAERLGTVNETFYLYAETDMYEISRAIEKLEP 167
Query: 290 RALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPR 349
+IIDSIQT+ V AG + QV+E T+ LL+ AK I + + GHVTK G IAGPR
Sbjct: 168 DYVIIDSIQTMTQPDVTSVAGSVSQVRETTAELLKLAKTNGIAIFIVGHVTKEGSIAGPR 227
Query: 350 VLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQ 409
+LEH+VD VLY EG+K ++R+LR+VKNRFGST+E+G+FEM GL V NPS++FL E+
Sbjct: 228 MLEHMVDTVLYFEGDKHHTFRILRAVKNRFGSTNEIGIFEMQTHGLVEVMNPSQVFLEER 287
Query: 410 HSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQ 467
E G ++ V M+GSR L+EIQAL R G+ +R +I++VL K+
Sbjct: 288 L---EGATGSSIVVAMEGSRPILVEIQALVTPTMFGNAKRTTTGLDFNRVSLIMAVLEKR 344
Query: 468 AGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRM 527
AGL LQ +L GV + E A DLA+A +I SS+ E + FIGEIGL GE+R
Sbjct: 345 AGLLLQNQDAYLKAAGGVKINEPAIDLALAISIASSYKEKGTSSSECFIGEIGLTGEIRR 404
Query: 528 VSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGF----EQMEFIGCKNLKEVINVVF 580
V+ +E+RV KLG+ K VPK+ LG E +E IG + E + VF
Sbjct: 405 VNSIEQRVREAQKLGFTKVYVPKN------NLGGWEAPEGIEIIGVSTIGETLRKVF 455
>gi|325298410|ref|YP_004258327.1| DNA repair protein RadA [Bacteroides salanitronis DSM 18170]
gi|324317963|gb|ADY35854.1| DNA repair protein RadA [Bacteroides salanitronis DSM 18170]
Length = 457
Score = 341 bits (875), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 188/472 (39%), Positives = 285/472 (60%), Gaps = 22/472 (4%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVR 171
+T +VC+ CGY +W G C +C T E PV + + +P +
Sbjct: 4 EKTVYVCTHCGYESPKWAGKCPSCGQWNTFTEEVV--RKETPVAKHAAHGIESVRSKPQQ 61
Query: 172 LLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAII 231
L E+ + RI + +E+ RVLGGGLV GSL LIGG+PG+GKSTL+LQ +
Sbjct: 62 LHEITSSE---ELRIDMGD---DELNRVLGGGLVEGSLTLIGGEPGIGKSTLILQTVLRL 115
Query: 232 ADVHDLGEPSPVVYVSGEESVEQIGNRADRM-MIATEELFLYSSTDIEDIVEKVQPLSPR 290
+ V+Y+SGEES Q+ RADR+ T +L + T +E I ++ +P
Sbjct: 116 PGLK-------VLYISGEESARQLKLRADRIPHPETTQLLIACETSLEQIFTHIKNTAPA 168
Query: 291 ALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRV 350
+IIDSIQT+ + S G ++QV+EC++A+L+FAK+T PV+L GH+ K G IAGP+V
Sbjct: 169 LVIIDSIQTISTETIDSSPGSIVQVRECSAAILKFAKETGTPVILIGHINKEGSIAGPKV 228
Query: 351 LEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQH 410
LEHIVD VL EG++ YR+LRS+KNRFGST ELG++EM Q GL+ VSNPS++ L++ H
Sbjct: 229 LEHIVDTVLQFEGDQHYMYRILRSIKNRFGSTAELGIYEMRQDGLRQVSNPSELLLTQDH 288
Query: 411 SDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMKQA 468
E ++G+A+A ++G R FLIE+QAL + + R G R +M+++VL K+
Sbjct: 289 ---EGMSGVAIACAVEGIRPFLIEVQALVSTAAYGMPQRSATGFDLRRMNMLLAVLEKRV 345
Query: 469 GLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMV 528
G KL + +FLN+ G+ + + A DLAV +AI SS ++ I G+ GE+GL GE+R V
Sbjct: 346 GFKLAQKDVFLNIAGGLKVNDPAIDLAVISAILSSNMDTEIETGVCMAGEVGLSGEIRPV 405
Query: 529 SRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+R+E+R+ KLG+++ ++PK + L ++E + + ++E +F
Sbjct: 406 NRIEQRIGEAEKLGFKRMLIPKHNLQGLDRKKI-KIELVPVRKVEEAFRELF 456
>gi|429751542|ref|ZP_19284455.1| DNA repair protein RadA [Capnocytophaga sp. oral taxon 326 str.
F0382]
gi|429180487|gb|EKY21707.1| DNA repair protein RadA [Capnocytophaga sp. oral taxon 326 str.
F0382]
Length = 454
Score = 341 bits (874), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 189/476 (39%), Positives = 283/476 (59%), Gaps = 35/476 (7%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T + C +CG +W G C C+ T+ VV + P E+ P++
Sbjct: 5 KTAYFCQNCGAQYSKWQGQCYTCKQWNTIVE---------EVVHKDTAPAWQEKESPIK- 54
Query: 173 LEVNKGMK-----QLD-WRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQ 226
NK K Q+D + P +E+ VLGGG+VPGS+ L+GG+PG+GKSTLLLQ
Sbjct: 55 ---NKAPKYIPISQIDTQQEPRLNSNNHELNNVLGGGIVPGSVTLLGGEPGIGKSTLLLQ 111
Query: 227 MAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQP 286
+A L P +YVSGEES +QI RADR+ + F+ + T ++I ++++
Sbjct: 112 IA--------LNLPYRTLYVSGEESEKQIKMRADRIPHKLDNCFILTETKTQNIFQQIKE 163
Query: 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIA 346
L P +IIDSIQT+ + SAG + Q++ECTS L++FAK T+ PV+L GH+TK G IA
Sbjct: 164 LLPEIVIIDSIQTLQSDYIEASAGSISQIRECTSELIKFAKTTHTPVILIGHITKDGQIA 223
Query: 347 GPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFL 406
GP++LEH+VD VL EG++ YR+LRS+KNRFGST ELG++EM GL+ V+NPS+I +
Sbjct: 224 GPKILEHMVDTVLQFEGDRNHVYRILRSLKNRFGSTSELGIYEMLSNGLREVNNPSEILI 283
Query: 407 SEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVL 464
S+ E ++G ++A ++G R +IEIQAL + T R G A R +M+++VL
Sbjct: 284 SK---TDETISGTSIAATLEGMRPLMIEIQALVSTAVYGTPQRSTTGFNAKRLNMLLAVL 340
Query: 465 MKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGE 524
K+AG +L +FLN+ G+ + + A DL VA AI SS + I + F GE+GLGGE
Sbjct: 341 EKRAGFRLGAKDVFLNITGGITIDDPATDLGVAMAILSSNEDIAIEKDVCFAGEVGLGGE 400
Query: 525 LRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+R V R+E+R++ KLG+ V K + +L +++ I +++ I +F
Sbjct: 401 IRPVQRVEQRITEAEKLGFNTIFVSKYNKIALKNT---KIKVITVAKIEDAIQELF 453
>gi|258648074|ref|ZP_05735543.1| DNA repair protein RadA [Prevotella tannerae ATCC 51259]
gi|260851933|gb|EEX71802.1| DNA repair protein RadA [Prevotella tannerae ATCC 51259]
Length = 461
Score = 341 bits (874), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 199/477 (41%), Positives = 294/477 (61%), Gaps = 29/477 (6%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRY---SAGESDEGPVVQRTWLPQKPEEVQP 169
+T +VC +CG +W G C AC T K S+ V +RT + + P
Sbjct: 4 KTAFVCENCGQESAKWIGRCPACGEWNTFKEIRLASSSSQQSASVAERTLSQDRRSKRGP 63
Query: 170 VRLLEVN-KGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMA 228
V L +V + + D P E+ RVLGGGLVPGSL+L+GG+PG+GKSTLLLQ
Sbjct: 64 VSLSDVQADAVSRYDLHDP-------ELNRVLGGGLVPGSLILLGGEPGIGKSTLLLQTL 116
Query: 229 AIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIAT--EELFLYSSTDIEDIVEKVQP 286
+ + V+Y+SGEES +QI RADR+ + + L T++E I E+++
Sbjct: 117 LRLTN-------RKVLYISGEESEQQIKLRADRLAPSASGNDCLLLCETNLERIFEQLRD 169
Query: 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIA 346
+SP +IIDSIQT+ + + G L Q++ C + L++AK + PVLL GH+TK G IA
Sbjct: 170 VSPDLIIIDSIQTMATETIDSAPGSLSQIRTCAAEFLKYAKSSATPVLLVGHITKDGAIA 229
Query: 347 GPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFL 406
GP++LEHIVD VL EG++ YR+LRS+KNRFGSTDELG++EM GL+ V+NPS++ L
Sbjct: 230 GPKILEHIVDTVLQFEGDRHYFYRILRSIKNRFGSTDELGIYEMRAEGLRPVANPSELLL 289
Query: 407 SEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVL 464
+E ++ L+G+AVA ++G+R FLIE+QAL S + T R G R +M+++VL
Sbjct: 290 TE---GTDELSGIAVAAAVEGARPFLIEVQALVSSAAYGTPQRSATGFDLRRLNMLLAVL 346
Query: 465 MKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGE 524
K+AG KL +FLN+ G+ +T+ A DL+V AAI SS ++ I IA GE+GL GE
Sbjct: 347 EKRAGFKLGAKDVFLNIAGGLRVTDPAIDLSVIAAILSSNVDIAIDRAIAMAGEVGLSGE 406
Query: 525 LRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFE-QMEFIGCKNLKEVINVVF 580
+R V+R+ +R++ AKLG+++ ++P E SL LG E ++ I + ++E + +F
Sbjct: 407 IRPVTRIRQRIAEAAKLGFKRFLLP---EASLKGLGAEVNIQLIPVRRVEEALQALF 460
>gi|302390928|ref|YP_003826748.1| DNA repair protein RadA [Acetohalobium arabaticum DSM 5501]
gi|302203005|gb|ADL11683.1| DNA repair protein RadA [Acetohalobium arabaticum DSM 5501]
Length = 462
Score = 341 bits (874), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 188/478 (39%), Positives = 289/478 (60%), Gaps = 31/478 (6%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRY---SAGESDEGPVVQRTWLPQKPEEVQ 168
+ +VC +CG+ +W G C C S T+ + + + ++ P+++
Sbjct: 4 KKVRYVCEECGHEALKWNGQCAGCGSWNTLVKKIHDKQEKKKQEEKKKKAEKGNPPQQID 63
Query: 169 PVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMA 228
+ N+ +L +E+ RVLGGG+VPGSL+LIGG PG+GKSTLLLQ+A
Sbjct: 64 QITTATANRLKTEL-----------SELNRVLGGGIVPGSLILIGGAPGIGKSTLLLQLA 112
Query: 229 AIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLS 288
I+ + V+YVS EES Q+ RADR+ + + EL++ + T+ I E+V+ L+
Sbjct: 113 YQISCKY-----GKVLYVSAEESKHQVKLRADRLQVNSSELYVLTETNYFTIEEEVKNLA 167
Query: 289 PRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGP 348
P +IIDSIQT+Y G + QV+ECT L+R AK +IP+ L GHVTK G IAGP
Sbjct: 168 PELVIIDSIQTIYDPDYDSVPGSIKQVRECTGKLMRLAKTEDIPIFLVGHVTKKGSIAGP 227
Query: 349 RVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSE 408
++LEH+VD VLY + E+ YR+LRS KNR+GSTDE+G+FEM Q GL V NPS+ F+SE
Sbjct: 228 KMLEHMVDVVLYFDSEQQQLYRILRSAKNRYGSTDEIGIFEMKQQGLIEVLNPSRHFISE 287
Query: 409 QHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMK 466
+ S ++G + ++G+R L+E+QAL + + + +R +G+ R +I++VL K
Sbjct: 288 RPSG---VSGSVIVPCLEGTRPILVEVQALTSTANYGSPTRMTSGVDHRRVSLILAVLEK 344
Query: 467 QAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELR 526
+ GL LQ + +N+ G+ + E DL +A AI SSF E P+P + +GEIGL GE+R
Sbjct: 345 RLGLYLQGEDVNINIAGGMQIEEPGIDLGIAVAIISSFRELPLPEDLLVLGEIGLSGEVR 404
Query: 527 MVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFE----QMEFIGCKNLKEVINVVF 580
VSRME R+ KLG+++ I+P + +L++L + ++E G K + EV++++
Sbjct: 405 AVSRMESRIQEAIKLGFKQFIIP---DGNLSSLELDVSDLEIEVCGVKQVSEVLDLIL 459
>gi|262281811|ref|ZP_06059580.1| DNA repair protein RadA [Streptococcus sp. 2_1_36FAA]
gi|262262265|gb|EEY80962.1| DNA repair protein RadA [Streptococcus sp. 2_1_36FAA]
Length = 445
Score = 341 bits (874), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 196/471 (41%), Positives = 279/471 (59%), Gaps = 34/471 (7%)
Query: 117 VCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL---- 172
+C +C Y ++ G C C G + E E V+ + E+ +P++L
Sbjct: 1 MCQNCEYHSPKYLGRCPNC---GAWSSFV--EEVEAAEVKHARVSLTGEKTRPMKLAEIT 55
Query: 173 -LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAII 231
++VN+ ++D E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++
Sbjct: 56 SIDVNRTKTEMD-----------EFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVST-- 102
Query: 232 ADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRA 291
L V+YVSGEES EQI RA+R+ E +LY+ T++++I +++ P
Sbjct: 103 ----QLSHQGTVLYVSGEESAEQIKLRAERLGDIDSEFYLYAETNMQNIRTEIEKNKPDF 158
Query: 292 LIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVL 351
LIIDSIQTV ++ G + QV+E T+ L++ AK NI + GH+TK G +AGPR L
Sbjct: 159 LIIDSIQTVMSPEISSVQGSVSQVREVTAELMQLAKTNNIATFIVGHMTKEGTLAGPRTL 218
Query: 352 EHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHS 411
EH+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS++FL E+
Sbjct: 219 EHMVDTVLYFEGERQHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVVNPSEVFLEERLD 278
Query: 412 DSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAG 469
+ G ++ V M+G+R L E+QAL R G+ +RA +I++VL K+AG
Sbjct: 279 GA---TGSSIVVTMEGTRPILAEVQALVTPTMFGNAKRTTTGLDFNRASLIMAVLEKRAG 335
Query: 470 LKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVS 529
L LQ +L GV L E A DLAVA AI SS+ + P FIGEIGL GE+R V+
Sbjct: 336 LLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDLPTNPQECFIGEIGLTGEIRRVN 395
Query: 530 RMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
R+E+R++ AKLG+ K PK++ L + ++ IG + EV+ VF
Sbjct: 396 RIEQRINEAAKLGFTKVYAPKNSLNGLKVP--DNIQVIGVTTIGEVLKKVF 444
>gi|404379976|ref|ZP_10985023.1| DNA repair protein RadA [Simonsiella muelleri ATCC 29453]
gi|294482610|gb|EFG30300.1| DNA repair protein RadA [Simonsiella muelleri ATCC 29453]
Length = 461
Score = 341 bits (874), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 188/472 (39%), Positives = 281/472 (59%), Gaps = 21/472 (4%)
Query: 109 GKANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQ 168
KA + + C++CG T +W G C C T+ A + Q +W +
Sbjct: 2 AKAPKIVYQCTECGGTSPKWVGKCPHCGEWNTLTENLAAPESKNARFQ-SW------AAE 54
Query: 169 PVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMA 228
++ E++K Q +P E+ RVLGGGLV G+++L+GGDPG+GKSTLLLQ
Sbjct: 55 TTQVQELSKVTAQ---EVPREATGMGELDRVLGGGLVDGAVILLGGDPGIGKSTLLLQTI 111
Query: 229 AIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLS 288
A++A + V+YVSGEES +Q+ R+ R+ + + + L + +E I ++
Sbjct: 112 ALMAKKRN------VLYVSGEESAQQVALRSQRLGLNADGVHLLAEIRLEAIQAALKQHK 165
Query: 289 PRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGP 348
P ++IDSIQT+Y + + G + QV+EC + L R AK+ I ++ GHVTK G IAGP
Sbjct: 166 PSVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRMAKQMGIAMIFVGHVTKDGAIAGP 225
Query: 349 RVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSE 408
RVLEH+VD VLY EG++ S+YR++R++KNRFG+ +ELGVF M++ GL+ VSNPS IFL+
Sbjct: 226 RVLEHMVDTVLYFEGDQHSNYRMIRAIKNRFGAANELGVFAMTETGLKGVSNPSAIFLAS 285
Query: 409 QHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVLMK 466
D +AG V V +GSR L+EIQAL G T R G++ +R M+++VL +
Sbjct: 286 YRDD---VAGSCVLVTQEGSRPLLVEIQALVDDAHGFTPKRLTVGLEQNRLAMLLAVLNR 342
Query: 467 QAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELR 526
AG+ + +FLN V GV ++E A DLAV A+ SSF P+P + GEIGL GE+R
Sbjct: 343 HAGIACFDQDVFLNAVGGVKISEPAADLAVILAMLSSFRNKPLPEKMVAFGEIGLSGEIR 402
Query: 527 MVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINV 578
V R ++R+ KLG+++ IVPK+ A F ++ G NL++ +++
Sbjct: 403 PVPRGQERLKEAEKLGFKRAIVPKANLPKNAPKDFPNLQIYGVDNLQDAVSL 454
>gi|309809229|ref|ZP_07703099.1| DNA repair protein RadA [Lactobacillus iners SPIN 2503V10-D]
gi|308170463|gb|EFO72486.1| DNA repair protein RadA [Lactobacillus iners SPIN 2503V10-D]
Length = 459
Score = 341 bits (874), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 192/471 (40%), Positives = 275/471 (58%), Gaps = 18/471 (3%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T + C +C Y + G C C + +K+ + + + L +P +L
Sbjct: 5 KTQYRCKNCDYVSASYLGRCPNCGAWNQLKKETEVAKTTSNRLTASRLITAIGNNEPKKL 64
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
E++ KQ+ P S E+ RVLGGG+VPGSLVL+GGDPG+GKSTL+LQ+ IA
Sbjct: 65 SEIDIK-KQIRITTPFS-----ELNRVLGGGIVPGSLVLVGGDPGIGKSTLMLQIMGSIA 118
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+ H V+YVSGEES QI RA+R+ I+ EL LYS T++E+I E++ L P L
Sbjct: 119 NSHK------VLYVSGEESASQIKMRAERLHISDTELLLYSETNMENIREQIVDLKPEFL 172
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
+IDSIQT+ G QV+E T+ LL+ AK I V + GHVTK G IAGP++LE
Sbjct: 173 VIDSIQTMNEPSQDSMVGSATQVREVTAELLKIAKIDKITVFVIGHVTKEGAIAGPKILE 232
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EG+K SYR+LRSVKNRFG+T+E+G+FEM + GL V+NPS +FL E+ +
Sbjct: 233 HMVDTVLYFEGDKHHSYRILRSVKNRFGATNEIGMFEMKEEGLSEVTNPSAVFLDERLPN 292
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMKQAGL 470
S G A+ V ++G+R L +IQAL + R +G+ +R ++++VL K+ L
Sbjct: 293 S---TGSAIVVSLEGTRPILADIQALVTPTAFGYAKRTTSGLDYNRVALLLAVLEKRGNL 349
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ FL G+ L E A DLA+ A+ SS+ I F+GE+GL GE+R ++
Sbjct: 350 MLQNQDAFLTATGGIKLNEPAIDLAICMAVASSYKNKEIAVTDCFVGEVGLTGEIRRINN 409
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVFT 581
+E RV A G+++ VPK S +E +G +L E + + FT
Sbjct: 410 IEARVKEAATRGFKRIFVPK-YNVSAKLQSHTTIEIVGVISLMEALKIEFT 459
>gi|429746125|ref|ZP_19279494.1| DNA repair protein RadA [Capnocytophaga sp. oral taxon 380 str.
F0488]
gi|429166910|gb|EKY08851.1| DNA repair protein RadA [Capnocytophaga sp. oral taxon 380 str.
F0488]
Length = 454
Score = 341 bits (874), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 182/446 (40%), Positives = 274/446 (61%), Gaps = 20/446 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T + C +CG +W G C C+ T+ + D P Q P K + + + +
Sbjct: 5 KTAYFCQNCGAQYSKWQGQCYVCKQWNTIVE-EVVQKDTAPAWQEKESPIKSKAPKYISI 63
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
+++ Q + R+ + +E+ VLGGG+VPGS+ L+GG+PG+GKSTLLLQ+A
Sbjct: 64 SQIDT---QQEARLNSNN---HELNNVLGGGIVPGSVTLLGGEPGIGKSTLLLQIA---- 113
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
L P +YVSGEES +QI RADR+ + F+ + T ++I ++++ L P +
Sbjct: 114 ----LNLPYRTLYVSGEESEKQIKMRADRIPHKLDNCFILTETKTQNIFQQIRELLPEIV 169
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQT+ + SAG + Q++ECTS L++FAK T+ PV+L GH+TK G IAGP++LE
Sbjct: 170 IIDSIQTLQSDYIEASAGSISQIRECTSELIKFAKTTHTPVILIGHITKDGQIAGPKILE 229
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VL EG++ YR+LRS+KNRFGST ELG++EM GL+ V+NPS+I +S+
Sbjct: 230 HMVDTVLQFEGDRNHVYRILRSLKNRFGSTSELGIYEMLSNGLREVNNPSEILISK---T 286
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
E ++G ++A ++G R +IEIQAL + T R G A R +M+++VL K+AG
Sbjct: 287 DETISGTSIAATLEGMRPLMIEIQALVSTAVYGTPQRSTTGFNAKRLNMLLAVLEKRAGF 346
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
+L +FLN+ G+ + + A DL VA AI SS + I + F GE+GLGGE+R V R
Sbjct: 347 RLGAKDVFLNITGGITIDDPATDLGVAMAILSSNEDIAIEKDVCFAGEVGLGGEIRPVQR 406
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSL 556
+E+R++ KLG+ V K + +L
Sbjct: 407 VEQRITEAEKLGFNTIFVSKYNKIAL 432
>gi|332879993|ref|ZP_08447677.1| DNA repair protein RadA [Capnocytophaga sp. oral taxon 329 str.
F0087]
gi|332681989|gb|EGJ54902.1| DNA repair protein RadA [Capnocytophaga sp. oral taxon 329 str.
F0087]
Length = 454
Score = 341 bits (874), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 180/440 (40%), Positives = 271/440 (61%), Gaps = 20/440 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T + C +CG +W G C AC+ T+ + D PV Q + + + +
Sbjct: 5 KTAYFCQNCGTQYSKWQGQCHACKQWNTIVE-EVVQKDSAPVWQE---KESISKNKAPKY 60
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
+ V++ Q + R+ + +E+ VLGGG+VPGS+ L+GG+PG+GKSTLLLQ+A
Sbjct: 61 IAVSQISTQQESRLNSNN---HELNNVLGGGIVPGSVTLLGGEPGIGKSTLLLQIA---- 113
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
L P +YVSGEES +QI RADR+ + F+ + T ++I ++++ L P +
Sbjct: 114 ----LNLPYRTLYVSGEESEKQIKMRADRIPHHLDNCFILTETKTQNIFQQIKELLPEIV 169
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQT+ + SAG + Q++ECTS L++FAK T+ PV+L GH+TK G IAGP++LE
Sbjct: 170 IIDSIQTLQSDYIEASAGSISQIRECTSELIKFAKTTHTPVILIGHITKDGQIAGPKILE 229
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VL EG++ YR+LRS+KNRFGST ELG++EM GL+ V+NPS+I +S+
Sbjct: 230 HMVDTVLQFEGDRNHVYRILRSLKNRFGSTSELGIYEMLSNGLREVNNPSEILISK---T 286
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
E ++G +A ++G R +IEIQAL + T R G A R +M+++VL K+AG
Sbjct: 287 DETISGTTIAATLEGMRPLMIEIQALVSTAVYGTPQRSTTGFNAKRLNMLLAVLEKRAGF 346
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
+L +FLN+ G+ + + A DL VA AI SS + I + F GE+GLGGE+R + R
Sbjct: 347 RLGAKDVFLNITGGITIDDPATDLGVAMAILSSNEDIAIEKDVCFAGEVGLGGEIRPIQR 406
Query: 531 MEKRVSTVAKLGYRKCIVPK 550
+E+R++ KLG+ + K
Sbjct: 407 IEQRITEAEKLGFNTIFISK 426
>gi|346308885|ref|ZP_08850989.1| DNA repair protein RadA [Dorea formicigenerans 4_6_53AFAA]
gi|345901434|gb|EGX71233.1| DNA repair protein RadA [Dorea formicigenerans 4_6_53AFAA]
Length = 456
Score = 341 bits (874), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 190/474 (40%), Positives = 291/474 (61%), Gaps = 24/474 (5%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQR--TWLPQKPEEV 167
K ++ + C +CG+ + +W G C C+ T +E V R T Q+
Sbjct: 3 KGKKSIFFCQNCGHEESKWLGQCPMCKEWNTF-------VEEKVSVTRGSTAAVQQVRNA 55
Query: 168 QPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQM 227
+ +++ ++ D R+ +G+ E+ RVLGGG+VPGSLVL+GGDPG+GKSTLLLQ+
Sbjct: 56 KDAKVVTLSSITTDDDERMQ-TGIL--ELDRVLGGGIVPGSLVLVGGDPGIGKSTLLLQV 112
Query: 228 AAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPL 287
++ G+ ++Y+SGEES++QI RA+RM +E LFL T++ I ++
Sbjct: 113 CQKLS-----GQNRKILYISGEESLKQIKLRANRMGTFSESLFLLCETNLGMIRHVIEEQ 167
Query: 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAG 347
P ++IDSIQT+Y VA + G + QV+E T+ ++ AK NI + + GHVTK G +AG
Sbjct: 168 HPDMVVIDSIQTMYNEEVASAPGSVSQVRESTNVFMQLAKGLNISIFIVGHVTKEGTVAG 227
Query: 348 PRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLS 407
PRVLEH+VD VLY EG++ +SYR+LR VKNRFGST+E+GVFEM + GL V NPS+ LS
Sbjct: 228 PRVLEHMVDTVLYFEGDRHASYRILRGVKNRFGSTNEIGVFEMQKGGLVEVENPSEYMLS 287
Query: 408 EQHSDSEFLAGLAVAVIMDGSRSFLIEIQAL-CVSGSTVSRHV-NGIQASRADMIISVLM 465
+ ++ +G VA M+G+R L+EIQAL C + + R G+ +R +++++VL
Sbjct: 288 GKPENA---SGSVVACAMEGTRPMLMEIQALVCKTNFGMPRRTAAGLDYNRVNLLMAVLE 344
Query: 466 KQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGEL 525
K+ G+ L ++N+ G+ L E A DL + AI SS+ PI GE+GL GE+
Sbjct: 345 KRMGMPLSTYDAYVNIAGGIRLNEPAADLGIVMAIASSYKNRPIDEDTIVFGEVGLSGEV 404
Query: 526 RMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVV 579
R V+ E+RVS KLG+++CIVP + K++ + E +E +G +N+ + +N+V
Sbjct: 405 RAVTMPEQRVSEAKKLGFKRCIVPAVSMKTIGKM--EGIEILGVENVNQAMNLV 456
>gi|85818278|gb|EAQ39438.1| DNA repair protein RadA/Sms [Dokdonia donghaensis MED134]
Length = 456
Score = 341 bits (874), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 183/443 (41%), Positives = 270/443 (60%), Gaps = 24/443 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T + C +CG +W G C AC+ T+ ++D ++ W K + L
Sbjct: 5 KTTFFCQNCGTQYAKWQGQCNACKQWNTIVEEVVQKAD-----KKDW---KSSTTKVSGL 56
Query: 173 LEVNKGMKQLDWRIPLSGLFGN---EVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAA 229
+K +K D E+ RVLGGGLVPGSL L+GG+PG+GKSTLLLQ++
Sbjct: 57 TRTSKPLKVADISTASEARMNTKNGELNRVLGGGLVPGSLTLLGGEPGIGKSTLLLQIS- 115
Query: 230 IIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSP 289
L P +YVSGEES +QI RA+R+ +++ ++ + T ++I V+ + P
Sbjct: 116 -------LALPYKTLYVSGEESQQQIKMRAERIHPESDQCYILTETKTQNIFRHVEEVQP 168
Query: 290 RALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPR 349
+IIDSIQT++ + +AG + Q++E TS L+RFAK+T PV+L GH+TK G+IAGP+
Sbjct: 169 DIVIIDSIQTLHSDHIESTAGSISQIRETTSELIRFAKETATPVILIGHITKDGNIAGPK 228
Query: 350 VLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQ 409
+LEH+VD VL EG++ YR+LR+ KNRFGST ELG++EM GL+ VSNPS+I +S+
Sbjct: 229 ILEHMVDTVLQFEGDRNHVYRILRAHKNRFGSTSELGIYEMQGSGLREVSNPSEILISK- 287
Query: 410 HSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQ 467
+ E L+G A+A M+G R +IEIQAL + T R G R +M+++VL K+
Sbjct: 288 --NDEELSGTAIATTMEGMRPLMIEIQALVSTAVYGTPQRSSTGYNVKRLNMLLAVLEKR 345
Query: 468 AGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRM 527
AG KL +FLNV G+++ + A DLAV AA+ SS ++ P+ + EIGL GE+R
Sbjct: 346 AGFKLGAKDVFLNVTGGISVDDPAIDLAVVAAVLSSNVDIPVDKAMCLAAEIGLAGEVRP 405
Query: 528 VSRMEKRVSTVAKLGYRKCIVPK 550
V+R+E+R+ KLG+ I+ K
Sbjct: 406 VNRIEQRILEAEKLGFTSIIISK 428
>gi|436836519|ref|YP_007321735.1| DNA repair protein RadA [Fibrella aestuarina BUZ 2]
gi|384067932|emb|CCH01142.1| DNA repair protein RadA [Fibrella aestuarina BUZ 2]
Length = 490
Score = 341 bits (874), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 186/461 (40%), Positives = 281/461 (60%), Gaps = 36/461 (7%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRAC-------ESVGTMKRYSAG--ESDEGPVVQRTWLPQK 163
+T + C +CG+ +W G C +C E V +AG GP L K
Sbjct: 37 KTIYFCQNCGHQSPKWLGRCPSCGEWNTLVEEVVQKDEPAAGGWRVTSGP----AKLTPK 92
Query: 164 PEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTL 223
P+ + ++ E + + NE+ RVLGGG+VPGSLVLIGG+PG+GKSTL
Sbjct: 93 PKALHAIQYEEQARTLT-----------VDNELNRVLGGGIVPGSLVLIGGEPGIGKSTL 141
Query: 224 LLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEK 283
LLQ+A + + V+YVSGEES +QI RA+R+ + T + + + T ++I
Sbjct: 142 LLQIALSLTGMR-------VLYVSGEESEQQIKMRAERLDVPTSDCHIMTETSTQNIFRV 194
Query: 284 VQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSG 343
V+ P LI+DSIQT++ V AG + QV+ECT+ +++AK++ +PV + GH+TK G
Sbjct: 195 VEQFEPEVLIVDSIQTMHSSMVESGAGSVSQVRECTTEFMKYAKESGVPVFMIGHITKEG 254
Query: 344 DIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSK 403
+AGP+VLEH+VD VL EG++ ++YR+LR+ KNRFGST ELG++EM GL+ VSNPS+
Sbjct: 255 SLAGPKVLEHMVDTVLTFEGDRHTTYRILRTTKNRFGSTSELGIYEMLGSGLRQVSNPSE 314
Query: 404 IFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQAL--CVSGSTVSRHVNGIQASRADMII 461
I +S++ E L+G+A+ +M+G+R +IEIQAL + T R G + R M++
Sbjct: 315 ILISQR---DEALSGVAIGSMMEGNRPLMIEIQALVGVSTYGTPQRSSTGYDSKRLQMLL 371
Query: 462 SVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGL 521
+VL K+ G +L + +FLNV G+ + + A DLAV AA+ +S+ + IP +AF E+GL
Sbjct: 372 AVLEKRGGFRLGQQDVFLNVAGGLRVEDPAIDLAVCAAVVASYEDVAIPTNVAFAAEVGL 431
Query: 522 GGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFE 562
GGE+R V+R+E R+ KLG+++ V K K L + F+
Sbjct: 432 GGEVRAVNRIESRIFEAQKLGFKEIFVSKYNLKGLDSDQFK 472
>gi|164686583|ref|ZP_02210611.1| hypothetical protein CLOBAR_00175 [Clostridium bartlettii DSM
16795]
gi|164604312|gb|EDQ97777.1| DNA repair protein RadA [Clostridium bartlettii DSM 16795]
Length = 462
Score = 341 bits (874), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 180/470 (38%), Positives = 293/470 (62%), Gaps = 23/470 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
RT +VC CGY +W G C C MK S E E ++ QPV +
Sbjct: 12 RTKYVCQSCGYETSKWMGKCPEC-----MKWNSFVEEIEEKKTKKEVFIIDKSSSQPVSI 66
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
+ +K+ + + E+ RVLGGG+V GSLVL+GGDPG+GKSTLL+Q+++ +A
Sbjct: 67 NSI-VAVKEERFTTDIE-----ELDRVLGGGIVKGSLVLVGGDPGIGKSTLLMQVSSKVA 120
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+ + V+Y+SGEES QI RA R+ + ++ L++++ ++ I ++ ++P +
Sbjct: 121 NTN-----KKVLYISGEESESQIKMRASRLGVNSQNLYIFAENNLSIIEAHLEKINPELI 175
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
I+DSIQTVY ++ + G + Q+KE TS ++ +KK I + GHVTK G +AGP++LE
Sbjct: 176 IVDSIQTVYSPEISSAPGTVSQIKEGTSKFMKISKKMGISTFIVGHVTKEGALAGPKLLE 235
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EGE+++SYRL+R+VKNRFGST+ELGVFEM +GL ++NPS++ +SE+ D
Sbjct: 236 HMVDTVLYFEGERYNSYRLVRAVKNRFGSTNELGVFEMKDVGLVELTNPSQVLISEKPKD 295
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMKQAGL 470
++G + ++G+R L+E+QAL + R G+ +R ++++VL K+ GL
Sbjct: 296 ---VSGSVIISTVEGTRPMLLELQALVAPTNFGMARRTSTGVDFNRVALLLAVLEKRIGL 352
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
++Q +++NVV G+ + E + DL + A+ SSF PI + + GE+GL GE+R VS
Sbjct: 353 QIQNQDVYINVVGGIKINEPSIDLGIVIAVASSFRNIPIASDVVVTGEVGLTGEIRAVSY 412
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+EKR++ KLG++K ++P++ +++ + + +E I NL++ IN+V
Sbjct: 413 IEKRIAECKKLGFKKIVIPRNNYEAVKDV--KGIEIIPVDNLRQAINIVL 460
>gi|258512698|ref|YP_003186132.1| DNA repair protein RadA [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
gi|257479424|gb|ACV59743.1| DNA repair protein RadA [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
Length = 448
Score = 341 bits (874), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 191/470 (40%), Positives = 279/470 (59%), Gaps = 28/470 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T +VC CG+ + +W G C AC T+ S + +P+ +
Sbjct: 5 KTRYVCQMCGHVEVKWMGRCPACGEWNTLVEEEVSPSGRFAPSKARVVPKPIVSIPAQAE 64
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
++ G+ + D+ VLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ IA
Sbjct: 65 NRLSTGLSECDF--------------VLGGGVVPGSLVLIGGDPGIGKSTLLLQVSHAIA 110
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
V+Y+SGEES QI RA+R+ EL++ + TD++ +E L P+ L
Sbjct: 111 K-----NGHRVLYISGEESATQIRLRAERLGTVHGELYVLAETDLDAALEAAVELKPQFL 165
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
I+DSIQTV+ G+A + G + QV+ECT LLR AK +I + GHVTK G IAGPR+LE
Sbjct: 166 IVDSIQTVFRPGLASAPGSVAQVRECTGLLLRVAKAESIATFIVGHVTKDGAIAGPRMLE 225
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VDAVLY EG++ YR+LR+VKNRFGST+EL VFEM GL+ +SNPS++FLSE+
Sbjct: 226 HMVDAVLYFEGDRHHMYRVLRAVKNRFGSTNELAVFEMRDDGLREISNPSELFLSERR-- 283
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMKQAGL 470
+ G AV M+G R L+E+QAL S S T R G R +M+++VL ++ G+
Sbjct: 284 -DIAPGSAVVCAMEGRRPLLLEVQALVASTSFGTPRRMTTGADLQRMNMLLAVLERRLGM 342
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
+L ++N+ GV + E A DL +A A+ +S + P+ G+ +IGE+GL E+R V+R
Sbjct: 343 QLGSCDAYVNIAGGVRVEEPAADLGIALALVASHRDRPLRQGV-YIGEVGLTAEVRAVTR 401
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+ +R+ KLG+ +CIVP A G ME + +++++ I+ F
Sbjct: 402 LAERIREARKLGFHRCIVPAGQSVPEAVPG---MEIVQVRSVQDAIDQAF 448
>gi|259500937|ref|ZP_05743839.1| DNA repair protein RadA [Lactobacillus iners DSM 13335]
gi|302190610|ref|ZP_07266864.1| DNA repair protein RadA [Lactobacillus iners AB-1]
gi|259167631|gb|EEW52126.1| DNA repair protein RadA [Lactobacillus iners DSM 13335]
Length = 459
Score = 340 bits (873), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 191/471 (40%), Positives = 276/471 (58%), Gaps = 18/471 (3%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T + C +C Y + G C C + +++ + ++ + L +P +L
Sbjct: 5 KTQYRCKNCDYVSASYLGRCPNCGAWNQLEKETEVAKTTSNLLTASRLITSIGNNEPKKL 64
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
E++ KQ+ P S E+ RVLGGG+VPGSLVL+GGDPG+GKSTL+LQ+ IA
Sbjct: 65 SEIDIK-KQIRITTPFS-----ELNRVLGGGIVPGSLVLVGGDPGIGKSTLMLQIMGSIA 118
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+ H V+YVSGEES QI RA+R+ I+ EL LYS T++E+I E++ L P L
Sbjct: 119 NSHK------VLYVSGEESASQIKMRAERLHISDTELLLYSETNMENIREQIVDLKPEFL 172
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
+IDSIQT+ G QV+E T+ LL+ AK I V + GHVTK G IAGP++LE
Sbjct: 173 VIDSIQTMNEPSQDSMVGSATQVREVTAELLKIAKIDKITVFVIGHVTKEGAIAGPKILE 232
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EG+K SYR+LRSVKNRFG+T+E+G+FEM + GL V+NPS +FL E+ +
Sbjct: 233 HMVDTVLYFEGDKHHSYRILRSVKNRFGATNEIGMFEMKEEGLSEVTNPSAVFLDERLPN 292
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMKQAGL 470
S G A+ V ++G+R L +IQAL + R +G+ +R ++++VL K+ L
Sbjct: 293 S---TGSAIVVSLEGTRPILADIQALVTPTAFGYAKRTTSGLDYNRVALLLAVLEKRGNL 349
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ FL G+ L E A DLA+ A+ SS+ I F+GE+GL GE+R ++
Sbjct: 350 MLQNQDAFLTATGGIKLNEPAIDLAICMAVASSYKNKEIAVTDCFVGEVGLTGEIRRINN 409
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVFT 581
+E RV A G+++ VPK S +E +G +L E + + FT
Sbjct: 410 IEARVKEAATRGFKRIFVPK-YNVSAKLQSHTTIEIVGVISLMEALKIEFT 459
>gi|260061517|ref|YP_003194597.1| DNA repair protein RadA [Robiginitalea biformata HTCC2501]
gi|88785649|gb|EAR16818.1| putative DNA repair protein [Robiginitalea biformata HTCC2501]
Length = 452
Score = 340 bits (873), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 191/456 (41%), Positives = 276/456 (60%), Gaps = 28/456 (6%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKP--EEVQP 169
+T + C +CG +W G C +C+ T+ + D R W + +P
Sbjct: 4 TKTAYFCQNCGAQFPKWSGQCNSCKEWNTLAEELLQKPD-----TRDWKSSEAPARSSKP 58
Query: 170 VRLLEVNKGMKQLDWRIPLSGLFGN-EVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMA 228
VRL E+ D + LS G+ E+ RVLGGGLVPGSL LIGG+PG+GKSTL+LQMA
Sbjct: 59 VRLGEIPT-----DREMRLSS--GDPELDRVLGGGLVPGSLTLIGGEPGIGKSTLMLQMA 111
Query: 229 AIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLS 288
+A +YVSGEES QI RA R+ + ++ + T+ I +++ L
Sbjct: 112 LKVA--------LRTLYVSGEESQRQIAMRAQRIRPDADSCYILTETNTNRIFKQITALE 163
Query: 289 PRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGP 348
P +I+DSIQT++ + AG + Q++ECT+ L++FAK+++ PV+L GH+TK G IAGP
Sbjct: 164 PELVIVDSIQTLHSDYLEAGAGSVSQIRECTAELIKFAKESHTPVILIGHITKEGSIAGP 223
Query: 349 RVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSE 408
++LEH+VD VL EG++ +R++R++KNRFG+T ELG++EM GL V NPS+I +S
Sbjct: 224 KILEHMVDTVLQFEGDRNHLFRIVRALKNRFGNTSELGIYEMKGDGLHGVVNPSEILISR 283
Query: 409 QHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMK 466
E L+G AVA ++G R LIEIQAL + T R G A R +M+++VL K
Sbjct: 284 S---GESLSGTAVAATVEGLRPLLIEIQALVSTAVYGTPQRSATGFPAKRLNMLLAVLEK 340
Query: 467 QAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELR 526
+AG KL +FLN+ G+ + + A DLAV AAI SS + P+P G+ F GEIGL GE+R
Sbjct: 341 RAGFKLAAKDVFLNITGGIQVDDPAIDLAVLAAILSSNADIPVPKGVCFAGEIGLAGEIR 400
Query: 527 MVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFE 562
V R+++RV +KLG+ V +A+ SL T G +
Sbjct: 401 PVPRIDQRVGEASKLGFETIYVSANAKISLKTPGID 436
>gi|403743592|ref|ZP_10953144.1| DNA repair protein RadA [Alicyclobacillus hesperidum URH17-3-68]
gi|403122622|gb|EJY56827.1| DNA repair protein RadA [Alicyclobacillus hesperidum URH17-3-68]
Length = 494
Score = 340 bits (873), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 196/474 (41%), Positives = 278/474 (58%), Gaps = 32/474 (6%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKR---YSAGESDEGPVVQRTWLPQKPEEVQ 168
+T +VC CG+ + +W G C C T+ SA G + LP Q
Sbjct: 48 TKTQYVCQSCGHVEVKWMGRCPGCGEWNTLIEEVTTSAPHRVAGSPTRSQALPILSIPAQ 107
Query: 169 PVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMA 228
R + G+++ D+ VLGGG+VPGSLVLIGGDPG+GKSTLLLQ++
Sbjct: 108 GERRFQT--GVQECDY--------------VLGGGVVPGSLVLIGGDPGIGKSTLLLQVS 151
Query: 229 AIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLS 288
IA V+Y+SGEES QI RA+R+ ++LF+ + TD++ +E L
Sbjct: 152 HAIAR-----SGRRVLYISGEESATQIRLRAERLGTVHDDLFVLAETDLDLAIEAAGQLR 206
Query: 289 PRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGP 348
P LI+DSIQTV+ G+ + G + QV+ECT LLRFAK NI + GHVTK G IAGP
Sbjct: 207 PDFLIVDSIQTVFRPGLTSAPGSVAQVRECTGVLLRFAKSQNIATFIVGHVTKDGAIAGP 266
Query: 349 RVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSE 408
R+LEH+VDAVLY EGE+ YR+LR+VKNRFGST+EL VFEM GL+ V+NPS +FLSE
Sbjct: 267 RMLEHMVDAVLYFEGERHHMYRVLRAVKNRFGSTNELAVFEMRDDGLREVANPSLLFLSE 326
Query: 409 QHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMK 466
+ G AV M+G R L+E+QAL S T R G R +M+++VL +
Sbjct: 327 RRV---MAPGSAVVAAMEGRRPLLLEVQALVAPTSFGTPRRMTTGADLQRVNMLLAVLER 383
Query: 467 QAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELR 526
+ GL++ + ++NV GV + E A DL +A A+ SS + P+ +G +IGEIGL E+R
Sbjct: 384 RLGLQVGASDAYVNVAGGVRVDEPAVDLGIALALVSSHRDRPLAHGDLYIGEIGLTAEVR 443
Query: 527 MVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
V+R+ +R+ KLG+ +C VP + + + G +E + +++++ I F
Sbjct: 444 AVTRLSERLREARKLGFERCFVPAAQTMTDSVAG---LEVVPVQSVQDAIQKAF 494
>gi|423280217|ref|ZP_17259130.1| DNA repair protein RadA [Bacteroides fragilis HMW 610]
gi|424666161|ref|ZP_18103197.1| DNA repair protein RadA [Bacteroides fragilis HMW 616]
gi|404574414|gb|EKA79165.1| DNA repair protein RadA [Bacteroides fragilis HMW 616]
gi|404584553|gb|EKA89218.1| DNA repair protein RadA [Bacteroides fragilis HMW 610]
Length = 455
Score = 340 bits (873), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 187/446 (41%), Positives = 272/446 (60%), Gaps = 33/446 (7%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKP------EE 166
+T +VCS+CG +W G C +C G Y +V++ ++P +
Sbjct: 5 KTVYVCSNCGQESPKWVGKCPSC---GEWNTYVE------EIVRKEVPNKRPVSGIESPK 55
Query: 167 VQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQ 226
+PV L E+ + P + E+ RVLGGGLVPGSLVLIGG+PG+GKSTL+LQ
Sbjct: 56 AKPVTLNEIEADEE------PRIDMHDEELNRVLGGGLVPGSLVLIGGEPGIGKSTLVLQ 109
Query: 227 MAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQP 286
+ + ++Y+SGEES Q+ RADR+ + + + T +E I ++
Sbjct: 110 TVLHMPERR-------ILYISGEESARQLKLRADRLTQTSSDCLIVCETSLEQIYVHIKN 162
Query: 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIA 346
P +IIDSIQT+ + S G + QV+EC++++LRFAK+T+ PVLL GH+ K G IA
Sbjct: 163 TRPDLVIIDSIQTISTESIESSPGSIAQVRECSASILRFAKETHTPVLLIGHINKEGSIA 222
Query: 347 GPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFL 406
GP+VLEHIVD VL EG++ YR+LRS+KNRFGST ELG++EM Q GL+ VSNPS++ L
Sbjct: 223 GPKVLEHIVDTVLQFEGDQHYMYRILRSIKNRFGSTAELGIYEMRQDGLRQVSNPSELLL 282
Query: 407 SEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVL 464
S+ H E ++G+A+A ++G R FLIE QAL S R G R +M+++VL
Sbjct: 283 SQDH---EGMSGVAIASAIEGVRPFLIETQALVSSAVYGNPQRSATGFDIRRMNMLLAVL 339
Query: 465 MKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGE 524
K+ G KL + +FLN+ G+ + + A DLAV +AI SS ++ I + GEIGL GE
Sbjct: 340 EKRVGFKLAQKDVFLNIAGGLKVNDPAIDLAVISAILSSNMDAAIEPEVCMAGEIGLSGE 399
Query: 525 LRMVSRMEKRVSTVAKLGYRKCIVPK 550
+R V+R+E+R+ KLG+++ I+PK
Sbjct: 400 IRPVNRIEQRIGEAEKLGFKRFILPK 425
>gi|237718018|ref|ZP_04548499.1| DNA repair protein RadA [Bacteroides sp. 2_2_4]
gi|229452659|gb|EEO58450.1| DNA repair protein RadA [Bacteroides sp. 2_2_4]
Length = 455
Score = 340 bits (873), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 186/470 (39%), Positives = 284/470 (60%), Gaps = 22/470 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T +VCS+CG +W G C +C G Y + P +R + ++ +P+ L
Sbjct: 5 KTVYVCSNCGQDSPKWVGKCPSC---GEWNTYVEEIVRKEPTNRRPVSGIETQKPKPLAL 61
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
++ + P + +E+ RVLGGGLV GSLVLIGG+PG+GKSTL++Q +
Sbjct: 62 SDIEADDE------PRINMHDDELNRVLGGGLVQGSLVLIGGEPGIGKSTLVMQTVLHMP 115
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+ ++YVSGEES Q+ RADR+ + + + T +E I ++ +P +
Sbjct: 116 E-------KKILYVSGEESARQLKLRADRLSDTSSDCLIVCETSLEQIYVHIKNTNPDLV 168
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQT+ + S G + QV+EC++++LRFAK+T+ PVLL GH+ K G IAGP+VLE
Sbjct: 169 IIDSIQTISTESIESSPGSIAQVRECSASILRFAKETHTPVLLIGHINKEGSIAGPKVLE 228
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
HIVD VL EG++ YR+LRS+KNRFGST ELG++EM Q GL+ VSNPS++ LS+ H
Sbjct: 229 HIVDTVLQFEGDQHYMYRILRSIKNRFGSTAELGIYEMRQDGLRQVSNPSELLLSQDH-- 286
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
E ++G+A+A ++G R FLIE QAL S R G R +M+++VL K+ G
Sbjct: 287 -EGMSGVAIASAIEGIRPFLIETQALVSSAVYGNPQRSATGFDLRRMNMLLAVLEKRVGF 345
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
KL + +FLN+ G+ + + A DL V +AI SS ++ I + GEIGL GE+R V+R
Sbjct: 346 KLAQKDVFLNIAGGLKVNDPAIDLPVISAILSSNMDAAIEPEVCMAGEIGLSGEIRPVNR 405
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+E+R+ KLG+++ ++PK + + T ++E + + ++E +F
Sbjct: 406 IEQRIGEAEKLGFKRFLLPKYNLQGIDTQKL-KIELVPVRKVEEAFRALF 454
>gi|326798546|ref|YP_004316365.1| DNA repair protein RadA [Sphingobacterium sp. 21]
gi|326549310|gb|ADZ77695.1| DNA repair protein RadA [Sphingobacterium sp. 21]
Length = 461
Score = 340 bits (873), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 189/479 (39%), Positives = 288/479 (60%), Gaps = 34/479 (7%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKR-------YSAGESDEGPVVQRTWLPQKPE 165
+T + C +CGY +W G C +C T + G VV P K
Sbjct: 5 KTVYFCQNCGYESAKWLGKCPSCNQWNTFVEELVEKGGNKVPDWRSGSVVSGERKPNKAA 64
Query: 166 EVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLL 225
+ + E + +K D NE+ RVLGGG+VPGSLVLIGG+PG+GKSTL+L
Sbjct: 65 VIHEINYEEEAR-LKTPD----------NEMNRVLGGGVVPGSLVLIGGEPGIGKSTLML 113
Query: 226 QMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATE-ELFLYSSTDIEDIVEKV 284
Q+A I + L YVSGEES +QI RA+R++ +++ + ++ + T ++I +++
Sbjct: 114 QLALTIPGIKTL-------YVSGEESEQQIKMRAERLLQSSKADCYILTETSTQNIFKQI 166
Query: 285 QPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGD 344
+ P +IIDSIQT++ + + G + QVKECT+ LLRFAK+++ PV + GH+TK G
Sbjct: 167 ASVEPHLVIIDSIQTLHSSQIESTPGSVSQVKECTAELLRFAKESSTPVFIVGHITKDGA 226
Query: 345 IAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKI 404
IAGP+VLEH+VD VL EG++ YR+LR+VKNRFGS+ ELG++EM GL+ VSNPS+I
Sbjct: 227 IAGPKVLEHMVDTVLQFEGDRHHMYRILRAVKNRFGSSSELGIYEMVHNGLREVSNPSEI 286
Query: 405 FLSEQHSDSEF-LAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMII 461
LS++ EF ++G+ +A +++G R LIE+QAL + + T R G R +M++
Sbjct: 287 LLSQR----EFPISGVTIAAMLEGIRPMLIEVQALVGNSAYGTPQRSSTGFDTRRMNMLL 342
Query: 462 SVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGL 521
+VL K+ G +L +FLN+ G+ + + A DLAV AI SS + +P IAF GE+GL
Sbjct: 343 AVLEKRFGFRLSTQDVFLNIAGGLRVEDPAIDLAVIVAILSSQQDIAVPTHIAFAGEVGL 402
Query: 522 GGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
GE+R V+R+E+R++ KLG+ + + K K L T + ++ ++E+ +F
Sbjct: 403 SGEIRAVNRIEQRIAEAEKLGFEEIYISKYNNKGLDTSKY-NIKINWMAKVEEIFQAIF 460
>gi|146328979|ref|YP_001209246.1| DNA repair protein RadA [Dichelobacter nodosus VCS1703A]
gi|146232449|gb|ABQ13427.1| DNA repair protein RadA [Dichelobacter nodosus VCS1703A]
Length = 454
Score = 340 bits (873), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 191/466 (40%), Positives = 278/466 (59%), Gaps = 23/466 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T +VC CG +W G C C + ++ A + + E VQ +
Sbjct: 5 KTQFVCQSCGAVHPKWQGQCNECGAWNQLEETRAPAKTPSAPPRNGYAGIVSESVQRLDA 64
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
+E+++ D +P SG+ +E RVLGGGLV GS+VLIGGDPG+GKSTLLLQ
Sbjct: 65 IEIHQ-----DVILP-SGI--SEFDRVLGGGLVHGSVVLIGGDPGIGKSTLLLQA----- 111
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
VH L + +YVSGEES QI RA R+ ++ E +FLY+ T +E I+ + P+ L
Sbjct: 112 -VHQLALKTSCLYVSGEESPRQIALRAQRLGLSQEHIFLYNQTQVELILATAEAEQPKVL 170
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
+IDSIQT++ + +AG + Q++ECT+ L+RFAKK+ + L GHVTK G IAGPRVLE
Sbjct: 171 VIDSIQTLFSDQLTAAAGSVSQLRECTAQLVRFAKKSGTTIFLIGHVTKEGAIAGPRVLE 230
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY E E S +R+LR++KNRFG +ELG+F M GL+ V+NPS +FLS +
Sbjct: 231 HMVDTVLYFESEVGSRFRILRAIKNRFGPVNELGMFAMLDNGLKPVTNPSALFLSRPEEN 290
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVLMKQAGL 470
AG V + +G+R+ L+E+QAL + S R G+ +SR M+++VL + G+
Sbjct: 291 Q---AGSVVLPVWEGTRALLVEVQALVDKTNSSYPRRLTQGLDSSRLAMLLAVLHRHGGI 347
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
+ + +++NVV G+ ++ETA D+AV AA SSF PI + IGEIGL GELR V+
Sbjct: 348 SMHDMDVYVNVVGGLKISETAADMAVLAACVSSFHHRPIARDLVMIGEIGLAGELRPVAN 407
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVI 576
E R+ + G+++ I+PK+ + T ME + L E +
Sbjct: 408 GEARLKAAEQHGFKRMILPKTNRLRVKT----TMELLIATTLTEAL 449
>gi|336053556|ref|YP_004561843.1| DNA repair protein radA [Lactobacillus kefiranofaciens ZW3]
gi|333956933|gb|AEG39741.1| DNA repair protein radA [Lactobacillus kefiranofaciens ZW3]
Length = 458
Score = 340 bits (873), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 190/471 (40%), Positives = 279/471 (59%), Gaps = 21/471 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T + C CGY + G C C + ++ + + L +K +PV+L
Sbjct: 5 KTQYKCHSCGYISASYLGRCPNCGAWNQFEKETEEVQKRSTKATASRLIKKTGINEPVKL 64
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
+K + + RIP E+ RVLGGG+VPGSLVLIGGDPG+GKSTL+LQ+ +
Sbjct: 65 ---DKVKAEKEDRIPTKS---EELNRVLGGGIVPGSLVLIGGDPGIGKSTLMLQIMS--- 115
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
DL E V+YVSGEES QI RADR+ + + LY TD+ DI E++ + P +
Sbjct: 116 ---DLSEKYKVLYVSGEESANQIKLRADRLGVGQSNMLLYPETDMHDIREQINDVKPDFV 172
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
+IDSIQT+ + G QV+E TS L++ AK I V + GHVTK G IAGP++LE
Sbjct: 173 VIDSIQTMNEPSLDSMTGSASQVREVTSELMKIAKMDAITVFVIGHVTKEGAIAGPKILE 232
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EG++ SYR+L SVKNRFG+ +E+G+FEM GL+ V+NPS IFL ++ +
Sbjct: 233 HMVDTVLYFEGDEHHSYRILHSVKNRFGAANEIGMFEMENEGLKEVTNPSSIFLDQRLPN 292
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMKQAGL 470
S G AV V ++G+R L EIQAL + R +GI ++A ++++VL K+ L
Sbjct: 293 S---TGSAVVVSLEGTRPLLAEIQALVTPTAFGYAKRTTSGISFNKASLLLAVLEKRGNL 349
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ ++L G+ L E A DLA+ A+ SS+ + I F+GE+GL GE+R V +
Sbjct: 350 MLQNQDVYLTATGGIKLNEPAIDLAITMAVASSYTDKEISPIDCFVGEVGLTGEVRRVDK 409
Query: 531 MEKRVSTVAKLGYRKCIVPK-SAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+E RV AK+G+++ +P+ + SL +LG +E I ++ + + +VF
Sbjct: 410 IEARVKEAAKVGFKRVFIPRHNMHASLNSLG---IEVIPVSSIPQALKLVF 457
>gi|300727734|ref|ZP_07061120.1| DNA repair protein RadA [Prevotella bryantii B14]
gi|299775022|gb|EFI71628.1| DNA repair protein RadA [Prevotella bryantii B14]
Length = 473
Score = 340 bits (873), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 189/482 (39%), Positives = 289/482 (59%), Gaps = 34/482 (7%)
Query: 116 WVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKP----------- 164
+VCS+CG +W G C +C T K+ +S + + +
Sbjct: 8 YVCSNCGQESAKWIGKCPSCNQWNTFKQIRITDSTGSSAAKSVAIQMRHGGADMLFGANT 67
Query: 165 -EEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTL 223
E +P +L E+ K D P + +E RVLGGG+VPGS+ L+GG+PG+GKSTL
Sbjct: 68 GSEEKPRKLTEI----KAEDE--PRLDMHDSEFNRVLGGGMVPGSITLLGGEPGIGKSTL 121
Query: 224 LLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRM---MIATEELFLYSSTDIEDI 280
LQ + ++ E + ++YVSGEES QI RA+R+ TE + + T++E I
Sbjct: 122 TLQT------IINMPERT-ILYVSGEESAHQIKLRAERLNRNHTNTEHISILCETNLEKI 174
Query: 281 VEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVT 340
+++ P +IIDSIQT+ V S G + QV+EC +ALLRFAK + IPV+L GH+
Sbjct: 175 FQRISEYKPDFIIIDSIQTISTENVDSSPGSISQVRECAAALLRFAKTSGIPVILIGHIN 234
Query: 341 KSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSN 400
K G +AGP++LEHIVD V+ EG++ YR+LRS+KNRFGST ELG++EM+Q GL+ V+N
Sbjct: 235 KEGTLAGPKILEHIVDTVIQFEGDQHYMYRILRSIKNRFGSTSELGIYEMTQGGLRQVNN 294
Query: 401 PSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRAD 458
PS++ L++ H + L+G+A++ ++G R FL+E QAL S + T R G R +
Sbjct: 295 PSELLLTQDH---QGLSGIAISSAIEGVRPFLVETQALVSSAAYGTPQRIATGFDQRRLN 351
Query: 459 MIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGE 518
M+++VL K+ G KL + +FLN+ G+ +T+ A DL+V AA+ SS ++ I +G GE
Sbjct: 352 MLLAVLEKRVGFKLMQKDVFLNIAGGLRVTDLAMDLSVIAAVLSSNVDTAIESGWCMCGE 411
Query: 519 IGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINV 578
+GL GE+R V+R+E+R++ KLG+ I+PK K + FE +E + ++E +
Sbjct: 412 VGLSGEVRPVNRIEQRIAEAEKLGFSHMIIPKYNLKGIDPQKFE-IELHPVRKVEEALRA 470
Query: 579 VF 580
+F
Sbjct: 471 LF 472
>gi|406909144|gb|EKD49462.1| hypothetical protein ACD_63C00137G0003 [uncultured bacterium]
Length = 476
Score = 340 bits (872), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 192/460 (41%), Positives = 283/460 (61%), Gaps = 22/460 (4%)
Query: 99 LGDLVGTRKKGKANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRT 158
+ +++G K K RT + C++C W G C C + T+++ S G++ + R
Sbjct: 14 ISNILGVSKMAK-ERTIYECTNCQAQFPAWMGKCTECGAWNTVEKASFGKAADSSAKDRA 72
Query: 159 WLPQKPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGV 218
+ + P+++ E+ +K I NE RV+GGG+VPGSL+LIGGDPG+
Sbjct: 73 FGEK------PLKMKEIVDEVKLFRTGI-------NEFDRVVGGGIVPGSLLLIGGDPGI 119
Query: 219 GKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIE 278
GKSTL++Q+ A + + V+YVSGEES+ QI RADR+ I + + + T++E
Sbjct: 120 GKSTLVMQLCAGFLNCN---RGKYVLYVSGEESLGQIKMRADRIGIKDDSMEFLTETNVE 176
Query: 279 DIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGH 338
++ + P IIDSIQT+ GSAG + QV+ + L+ AK+ N+ +LL GH
Sbjct: 177 YVISILNKKKPAFAIIDSIQTMVTEDALGSAGSVSQVRATAAKLMGTAKRANVALLLIGH 236
Query: 339 VTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAV 398
VTK G +AGPR LEH+VD VLY+EG+++ +YR+LR VKNRFGST+E GVFEM + GL V
Sbjct: 237 VTKEGAVAGPRTLEHLVDTVLYLEGDRYQTYRILRGVKNRFGSTNETGVFEMKEEGLVEV 296
Query: 399 SNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASR 456
+PS IFL E+ +E + G +VAV ++G+R L+E+QAL S R +GI +R
Sbjct: 297 KDPSGIFLEER---TEGITGSSVAVTIEGTRPLLVEVQALTSPTSFGYPKRTASGIDFNR 353
Query: 457 ADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFI 516
++I+VL K+A L L +F+NVV G + E A DLAV AI S+FL+ + N +A I
Sbjct: 354 LSLLIAVLTKRAHLNLSSQDVFVNVVGGFKVKEPAVDLAVCLAIASAFLDKSVGNQLAAI 413
Query: 517 GEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSL 556
GE+GL GE+R VS M++R+ +KLG++K VPK + SL
Sbjct: 414 GEVGLSGEIRQVSFMDRRLQEASKLGFKKIAVPKITKNSL 453
>gi|392391030|ref|YP_006427633.1| DNA repair protein RadA [Ornithobacterium rhinotracheale DSM 15997]
gi|390522108|gb|AFL97839.1| DNA repair protein RadA [Ornithobacterium rhinotracheale DSM 15997]
Length = 451
Score = 340 bits (872), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 195/472 (41%), Positives = 285/472 (60%), Gaps = 29/472 (6%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTW--LPQKPEEVQPV 170
+T + C +CG QW G C AC T+ VV++ P K + ++
Sbjct: 5 KTVFYCQNCGTRHAQWLGKCNACGEWNTIVE---------EVVEKNAPATPWKDDSIKTP 55
Query: 171 RLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAI 230
L ++ K + RI E+ RVLGGGLV GS+VL+GG+PG+GKSTLLLQ+A
Sbjct: 56 VLFNIHDIPKTNEARITTKN---GELDRVLGGGLVLGSVVLLGGEPGIGKSTLLLQVALS 112
Query: 231 IADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPR 290
+ + V+YVSGEES QI RA+R+ I T+ F+ + T + I ++ + + P
Sbjct: 113 LNHLK-------VLYVSGEESATQIKLRAERIGIGTDSCFVLTETQTQKIFKQAKEIQPN 165
Query: 291 ALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRV 350
LIIDSIQT+ + V S G + Q++ECT+ L+RFAK+TN PV+L GH+TK G+IAGP++
Sbjct: 166 VLIIDSIQTLQTQLVESSPGSVSQIRECTAELIRFAKQTNTPVILVGHITKEGNIAGPKI 225
Query: 351 LEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQH 410
LEH+VD VL EGE+ YRLLR+ KNRFGST ELG++EM +GL+ VSNPS++ +S
Sbjct: 226 LEHMVDVVLQFEGERNHIYRLLRAQKNRFGSTAELGIYEMQGVGLREVSNPSEVLIS--- 282
Query: 411 SDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQA 468
+ + L+G AVA M+G R LIEIQAL + T R G R +M+++VL K+A
Sbjct: 283 AKDQPLSGNAVASTMEGIRPMLIEIQALVSTAVYGTPQRSTTGYDIKRLNMLLAVLEKRA 342
Query: 469 GLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMV 528
G +L +FLN+ G+ + + A DLAV AI SS+ +P+ F E+GL GE+R V
Sbjct: 343 GFQLGVKDVFLNITGGIRVDDPAIDLAVVCAILSSYENETLPDNCCFAAEVGLSGEIRPV 402
Query: 529 SRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
SR+E+R+S KLGY + K + + + ++E +G N+ ++ ++F
Sbjct: 403 SRVEQRISEAEKLGYDVIFISKYNKVNTSNFNI-RVEMLG--NIGDLYKLLF 451
>gi|390442010|ref|ZP_10230031.1| DNA repair protein radA homolog [Microcystis sp. T1-4]
gi|389834673|emb|CCI34157.1| DNA repair protein radA homolog [Microcystis sp. T1-4]
Length = 508
Score = 340 bits (872), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 197/475 (41%), Positives = 285/475 (60%), Gaps = 51/475 (10%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKP------E 165
+RT ++CS CG QW G C +C++ GT++ + V + W +P
Sbjct: 4 SRTIYICSACGAESPQWLGKCPSCDTYGTLEEQVVAGGNNQAVNRPGWQNSRPNNGKGQR 63
Query: 166 EVQP---VRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKST 222
QP VR E+ + ++ R P SG E RVLGGG+VPGSLVLIGGDPG+GKST
Sbjct: 64 NPQPRISVRFSEITQYEQE---RFP-SGY--GEFDRVLGGGIVPGSLVLIGGDPGIGKST 117
Query: 223 LLLQMAAIIADVHDLGEPSP-VVYVSGEESVEQIGNRADRM---MIATE----------- 267
LLLQ+ + L + P ++YVS EES +QI RA R+ ++A E
Sbjct: 118 LLLQVT------NQLAQRLPRILYVSAEESGQQIKLRAARLGVGVVAVESENNGNGKEKK 171
Query: 268 ----------ELFLYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKE 317
L++ TD+E+I+ +++ L P+ +IDSIQT+Y + + G + QV+E
Sbjct: 172 ASESTAELDNHLYVLPETDLEEILRELESLRPQVAVIDSIQTLYFGALTSAPGSVAQVRE 231
Query: 318 CTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKN 377
CTSAL++ AK+ NI +L+ GHVTK G IAGPRVLEH+VD VLY EG++++S+RLLRSVKN
Sbjct: 232 CTSALMQVAKRENITLLIVGHVTKEGAIAGPRVLEHLVDTVLYFEGDRYASHRLLRSVKN 291
Query: 378 RFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQA 437
RFG+T E+G+FEM GL V NPS++FL + EF G A V +G+R ++E+QA
Sbjct: 292 RFGATHEIGIFEMVDHGLVEVENPSELFLGNR---DEFSPGTATVVACEGTRPIVVELQA 348
Query: 438 LCVSGSTVS--RHVNGIQASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLA 495
L S S R GI+ +R I++VL K+ G+ L + ++ G+ + E A DL
Sbjct: 349 LVSPTSYASPRRSTTGIEYNRLQQILAVLEKRVGIPLSKLDAYVASAGGLGVEEPAADLG 408
Query: 496 VAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPK 550
VA A+ +SF + + IGE+GLGG++R+VS+ME R+ AKLG+++ IVP+
Sbjct: 409 VAIAVVASFRDRVVDPRTVLIGEVGLGGQVRLVSQMELRLKEAAKLGFKRAIVPR 463
>gi|39995394|ref|NP_951345.1| DNA repair protein RadA [Geobacter sulfurreducens PCA]
gi|409910838|ref|YP_006889303.1| DNA repair protein RadA [Geobacter sulfurreducens KN400]
gi|39982157|gb|AAR33618.1| DNA repair protein RadA [Geobacter sulfurreducens PCA]
gi|298504395|gb|ADI83118.1| DNA repair protein RadA [Geobacter sulfurreducens KN400]
Length = 450
Score = 340 bits (872), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 193/470 (41%), Positives = 275/470 (58%), Gaps = 27/470 (5%)
Query: 114 TNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRLL 173
T + C CGY +W G C C + + G +G P +PV +
Sbjct: 5 TRYACQKCGYQSAKWLGKCPDCAAWNSFVEEVTGGGRKGAA-------SLPAATRPVPIC 57
Query: 174 EV-NKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
+V ++ +L I +E RVLGGGLV GSLVLIGGDPG+GKST+LLQ+ +A
Sbjct: 58 DVASEAETRLSCGI-------SEFDRVLGGGLVSGSLVLIGGDPGIGKSTILLQVMDHLA 110
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
PV+YVSGEES Q R +R+ I EL + + T +E I+ +V L+PRAL
Sbjct: 111 RT-----AGPVLYVSGEESARQTKMRGERLGIGARELLVLAETSLELILSQVTALAPRAL 165
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
+IDSIQTV+ + + G + QV+EC L+ AK+ IP LL GHVTK G +AGPRVLE
Sbjct: 166 VIDSIQTVFSANLESAPGSVSQVRECAGRLMELAKRNGIPTLLVGHVTKDGSLAGPRVLE 225
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EG+ ++R+LR+VKNRFGST+E+GVFEM + GL V NPS++FL+E+
Sbjct: 226 HMVDTVLYFEGDPGHAFRILRAVKNRFGSTNEIGVFEMKEGGLSEVRNPSELFLAERPLG 285
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMKQAGL 470
++G AV ++GSR L+E+QAL S R G+ +R ++++VL K+ GL
Sbjct: 286 ---VSGSAVVTTIEGSRPLLVELQALVTPSSLGVPRRTTLGVDHNRLALLVAVLDKKVGL 342
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
L IFLN G L+E A DL + AA+ SS L+ I +GE+GL GE+R +++
Sbjct: 343 HLSGQDIFLNAAGGARLSEPAIDLGMVAALASSHLDKIIDPHTVIVGEVGLAGEVRAITQ 402
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
E RV AKLG+ + ++P + + + + M +G K+L E + +F
Sbjct: 403 AETRVREAAKLGFTRAVIPAGSVRQVGDV--PGMNVVGVKSLDEALEQLF 450
>gi|160885022|ref|ZP_02066025.1| hypothetical protein BACOVA_03019 [Bacteroides ovatus ATCC 8483]
gi|423292283|ref|ZP_17270893.1| DNA repair protein RadA [Bacteroides ovatus CL02T12C04]
gi|423297246|ref|ZP_17275316.1| DNA repair protein RadA [Bacteroides ovatus CL03T12C18]
gi|156109372|gb|EDO11117.1| DNA repair protein RadA [Bacteroides ovatus ATCC 8483]
gi|392661940|gb|EIY55510.1| DNA repair protein RadA [Bacteroides ovatus CL02T12C04]
gi|392667804|gb|EIY61310.1| DNA repair protein RadA [Bacteroides ovatus CL03T12C18]
Length = 455
Score = 340 bits (872), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 185/470 (39%), Positives = 284/470 (60%), Gaps = 22/470 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T +VCS+CG +W G C +C G Y + P +R + ++ +P+ L
Sbjct: 5 KTVYVCSNCGQDSPKWVGKCPSC---GEWNTYVEEIVRKEPTNRRPVSGIETQKPKPLAL 61
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
++ + P + +E+ RVLGGGL+ GSLVLIGG+PG+GKSTL++Q +
Sbjct: 62 SDIEADDE------PRINMHDDELNRVLGGGLIQGSLVLIGGEPGIGKSTLVMQTVLHMP 115
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+ ++YVSGEES Q+ RADR+ + + + T +E I ++ +P +
Sbjct: 116 E-------KKILYVSGEESARQLKLRADRLSDTSSDCLIVCETSLEQIYVHIKNTNPDLV 168
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQT+ + S G + QV+EC++++LRFAK+T+ PVLL GH+ K G IAGP+VLE
Sbjct: 169 IIDSIQTISTESIESSPGSIAQVRECSASILRFAKETHTPVLLIGHINKEGSIAGPKVLE 228
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
HIVD VL EG++ YR+LRS+KNRFGST ELG++EM Q GL+ VSNPS++ LS+ H
Sbjct: 229 HIVDTVLQFEGDQHYMYRILRSIKNRFGSTAELGIYEMRQDGLRQVSNPSELLLSQDH-- 286
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
E ++G+A+A ++G R FLIE QAL S R G R +M+++VL K+ G
Sbjct: 287 -EGMSGVAIASAIEGIRPFLIETQALVSSAVYGNPQRSATGFDLRRMNMLLAVLEKRVGF 345
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
KL + +FLN+ G+ + + A DL V +AI SS ++ I + GEIGL GE+R V+R
Sbjct: 346 KLAQKDVFLNIAGGLKVNDPAIDLPVISAILSSNMDAAIEPEVCMAGEIGLSGEIRPVNR 405
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+E+R+ KLG+++ ++PK + + T ++E + + ++E +F
Sbjct: 406 IEQRIGEAEKLGFKRFLLPKYNLQGIDTQKL-KIELVPVRKVEEAFRALF 454
>gi|166364956|ref|YP_001657229.1| DNA repair protein RadA [Microcystis aeruginosa NIES-843]
gi|425465511|ref|ZP_18844820.1| DNA repair protein radA homolog [Microcystis aeruginosa PCC 9809]
gi|166087329|dbj|BAG02037.1| DNA repair protein [Microcystis aeruginosa NIES-843]
gi|389832236|emb|CCI24320.1| DNA repair protein radA homolog [Microcystis aeruginosa PCC 9809]
Length = 508
Score = 340 bits (872), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 197/475 (41%), Positives = 285/475 (60%), Gaps = 51/475 (10%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKP------E 165
+RT ++CS CG QW G C +C++ GT++ + V + W +P
Sbjct: 4 SRTIYICSACGAESPQWLGKCPSCDTYGTLEEQVVAGGNNPAVNRPGWQNSRPNNGKGQR 63
Query: 166 EVQP---VRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKST 222
QP VR E+ + ++ R P SG E RVLGGG+VPGSLVLIGGDPG+GKST
Sbjct: 64 NPQPRISVRFSEITQYEQE---RFP-SGY--GEFDRVLGGGIVPGSLVLIGGDPGIGKST 117
Query: 223 LLLQMAAIIADVHDLGEPSP-VVYVSGEESVEQIGNRADRM---MIATE----------- 267
LLLQ+ + L + P ++YVS EES +QI RA R+ ++A E
Sbjct: 118 LLLQVT------NQLAQRLPRILYVSAEESGQQIKLRAARLGVGVVAVESENNGNGKEKK 171
Query: 268 ----------ELFLYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKE 317
L++ TD+E+I+ +++ L P+ +IDSIQT+Y + + G + QV+E
Sbjct: 172 ASESTAELDNHLYVLPETDLEEILRELESLRPQVAVIDSIQTLYFGALTSAPGSVAQVRE 231
Query: 318 CTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKN 377
CTSAL++ AK+ NI +L+ GHVTK G IAGPRVLEH+VD VLY EG++++S+RLLRSVKN
Sbjct: 232 CTSALMQVAKRENITLLIVGHVTKEGAIAGPRVLEHLVDTVLYFEGDRYASHRLLRSVKN 291
Query: 378 RFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQA 437
RFG+T E+G+FEM GL V NPS++FL + EF G A V +G+R ++E+QA
Sbjct: 292 RFGATHEIGIFEMVDHGLVEVENPSELFLGNR---DEFSPGTATVVACEGTRPIVVELQA 348
Query: 438 LCVSGSTVS--RHVNGIQASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLA 495
L S S R GI+ +R I++VL K+ G+ L + ++ G+ + E A DL
Sbjct: 349 LVSPTSYASPRRSTTGIEYNRLQQILAVLEKRVGIPLSKLDAYVASAGGLGVEEPAADLG 408
Query: 496 VAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPK 550
VA A+ +SF + + IGE+GLGG++R+VS+ME R+ AKLG+++ IVP+
Sbjct: 409 VAIAVVASFRDRVVDPRTVLIGEVGLGGQVRLVSQMELRLKEAAKLGFKRAIVPR 463
>gi|344202405|ref|YP_004787548.1| DNA repair protein RadA [Muricauda ruestringensis DSM 13258]
gi|343954327|gb|AEM70126.1| DNA repair protein RadA [Muricauda ruestringensis DSM 13258]
Length = 452
Score = 340 bits (872), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 180/452 (39%), Positives = 277/452 (61%), Gaps = 22/452 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T + C +CG +W G C +C+ T+ + D +++W K + Q +
Sbjct: 5 KTAFFCQNCGTQFPKWIGQCSSCKEWNTIVEEVVQKED-----KKSWKTNKTAK-QANKP 58
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
L V++ ++ + R+ E RVLGGGLVPGSL L+GG+PG+GKSTLLLQ+A
Sbjct: 59 LRVSEITQEKELRLDT---LDQEFNRVLGGGLVPGSLTLLGGEPGIGKSTLLLQIA---- 111
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
L P ++YVSGEES QI RADR+ +E ++ + T ++I +++ + P +
Sbjct: 112 ----LKLPYKILYVSGEESQRQIKMRADRIQPNSENCYILTETKTQNIFQQISTIEPDLV 167
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
+IDSIQT++ + +AG + Q++E T+ L++FAK+++ PV+L GH+TK G IAGP++LE
Sbjct: 168 VIDSIQTLHTDYIESAAGSISQIRESTAELIKFAKESHTPVILVGHITKDGTIAGPKILE 227
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VL EG++ YR+LRS+KNRFGST ELG++EM GL+ V+NPS++ +S+ D
Sbjct: 228 HMVDTVLQFEGDRNYVYRILRSLKNRFGSTAELGIYEMQGSGLREVNNPSEVLISKNEED 287
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
L+G A+A ++G R LIEIQAL + T R G A R +M+++VL K+AG
Sbjct: 288 ---LSGTAIAATVEGMRPLLIEIQALVSTAVYGTPQRSATGFNAKRLNMLLAVLEKRAGF 344
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
KL +FLN+ G+++ + A DLAV AI SS + I G+ F E+GL GE+R V R
Sbjct: 345 KLGAKDVFLNITGGISVDDPAIDLAVMGAILSSNSDIAIEKGVCFAAEVGLAGEIRPVQR 404
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFE 562
+++R+ KLG+ + K+ + L G +
Sbjct: 405 VDQRILEAEKLGFSTIFISKNNKIGLKKTGIQ 436
>gi|255086593|ref|XP_002509263.1| predicted protein [Micromonas sp. RCC299]
gi|226524541|gb|ACO70521.1| predicted protein [Micromonas sp. RCC299]
Length = 465
Score = 340 bits (872), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 208/492 (42%), Positives = 297/492 (60%), Gaps = 46/492 (9%)
Query: 107 KKGKANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEE 166
KK +A +VC++CGY QW+G C C+ +MK V++ P
Sbjct: 2 KKAQA----YVCTECGYDANQWYGQCPGCKVWDSMK-----------VMRGVSEPSTASS 46
Query: 167 VQPVRLLEVNKGMKQLDW-RIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLL 225
+ + K R+ LS G E+ RVLGGG+VPG + L+GGDPGVGKST+LL
Sbjct: 47 GKSSGGGAGARAAKGSTMPRMRLSQELGKEIERVLGGGVVPGGMTLVGGDPGVGKSTILL 106
Query: 226 QMAAIIADVHDLGEPSPV--VYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEK 283
Q+A G PS V +Y SGEESVEQ+ RA+RM I + +FLYS+T +E+I+E
Sbjct: 107 QLAD--------GAPSSVGVLYASGEESVEQVAGRAERMGIDPDGVFLYSATRLENILEA 158
Query: 284 VQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSG 343
V L P AL++DSIQTV+L GS G + QV+EC +ALL AK T +PV + GHVTKSG
Sbjct: 159 VSRLKPAALVVDSIQTVFLEDATGSPGSVSQVRECATALLHAAKTTGMPVFIVGHVTKSG 218
Query: 344 DIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSK 403
DIAGPRVLEHIVD VLY+EG+ + R+LR KNR+GSTDE+GVF+MS G++ V++PS
Sbjct: 219 DIAGPRVLEHIVDVVLYLEGDSDRAVRILRGHKNRYGSTDEVGVFQMSDEGMKPVASPSA 278
Query: 404 IFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVS---------RHVNGIQA 454
+FL E+ + A A V + GSR F++E+QAL + R G++
Sbjct: 279 LFLGERVLSPDVSA--APTVTVQGSRPFMLEVQALTNERADAGDSNPQAPPIRTAVGLRF 336
Query: 455 SRADMIISVLMKQA-GLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGI 513
R ++++VL K G + +N +F+N+V G+ L + + D+AVA AI SSF+E P+P +
Sbjct: 337 ERMQLLLAVLAKFVLGRGVLKNDVFINIVGGMKLDDPSTDVAVALAIASSFVEKPLPPDM 396
Query: 514 AFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVP-----KSAEKSLATLGFEQMEFIG 568
F GE+GLGGELR V + E+R++ A +G+R+ ++P +S EK+ G +E +
Sbjct: 397 CFFGEVGLGGELRPVMQSERRIAEAATMGFRRVLLPEAGSDESTEKAAKKNG---VELVR 453
Query: 569 CKNLKEVINVVF 580
CK + + +
Sbjct: 454 CKTMADALQAAL 465
>gi|395241964|ref|ZP_10418964.1| DNA repair protein radA [Lactobacillus pasteurii CRBIP 24.76]
gi|394480712|emb|CCI85204.1| DNA repair protein radA [Lactobacillus pasteurii CRBIP 24.76]
Length = 457
Score = 340 bits (872), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 195/473 (41%), Positives = 284/473 (60%), Gaps = 21/473 (4%)
Query: 111 ANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPV 170
A RT + C CGY + G C C + ++ + + L QK +PV
Sbjct: 2 AVRTQYKCRSCGYISASYLGRCPNCGAWNQFEKETQEVQRRSSKQSASQLIQKVGGNEPV 61
Query: 171 RLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAI 230
+L EV Q + RI + G E+ RVLGGG+VPGSLVLIGGDPG+GKSTL+LQ+
Sbjct: 62 KLAEVKA---QKEERI--TSKIG-ELDRVLGGGIVPGSLVLIGGDPGIGKSTLMLQVMGT 115
Query: 231 IADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPR 290
+A H V+YVSGEES QI RADR+ IA +++ LY TD++ I E++ + P
Sbjct: 116 LAKEH------TVLYVSGEESASQIKLRADRLGIAADKMLLYPETDMQHIREQIDEIKPD 169
Query: 291 ALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRV 350
L+IDSIQT++ + G QV+E T+ L++ AK I V + GHVTK G IAGP++
Sbjct: 170 FLVIDSIQTMHEPSLDSMTGSASQVREVTNELMKIAKMDLITVFVIGHVTKEGAIAGPKI 229
Query: 351 LEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQH 410
LEH+VD VLY EG++ SYR+L SVKNRFG+ +E+G+FEM GL+ VSNPS IFL E+
Sbjct: 230 LEHMVDTVLYFEGDEHHSYRILHSVKNRFGAANEIGMFEMVNDGLKEVSNPSAIFLDERL 289
Query: 411 SDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMKQA 468
S G A+AV ++G+R L EIQAL + R +G+ +RA ++++VL K+
Sbjct: 290 PQS---TGSAIAVSLEGTRPLLAEIQALVTPTAFGYAKRTTSGLDYNRASLLLAVLEKRG 346
Query: 469 GLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMV 528
L LQ ++L G+ L E A DLA+ ++ SS+ I F+GE+GL GE+R V
Sbjct: 347 NLMLQNQDVYLTTTGGIKLNEPAIDLAIMMSVASSYRNKEILPTDCFVGEVGLTGEIRRV 406
Query: 529 SRMEKRVSTVAKLGYRKCIVPK-SAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
++++ RV+ AK+G+++ +PK + LA+ G +E I ++ + + +VF
Sbjct: 407 NKIDSRVNEAAKIGFKRIFIPKHNYYPDLASSG---IEVIPVASIAQALKLVF 456
>gi|169830396|ref|YP_001716378.1| DNA repair protein RadA [Candidatus Desulforudis audaxviator
MP104C]
gi|169637240|gb|ACA58746.1| DNA repair protein RadA [Candidatus Desulforudis audaxviator
MP104C]
Length = 445
Score = 340 bits (872), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 205/466 (43%), Positives = 279/466 (59%), Gaps = 26/466 (5%)
Query: 118 CSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRLLEVNK 177
C +CGY +W G C C T + E E +R L P P L EV
Sbjct: 3 CRECGYRSVRWLGRCPGCGEWHTFE-----EETEVKAARRETLAGDP----PRPLTEV-- 51
Query: 178 GMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDL 237
+ + RI SG+ E+ RVLGGG VPGS+VL+GGDPGVGKSTLLLQ A +A + +
Sbjct: 52 -VGAEETRI-TSGI--GEMDRVLGGGFVPGSVVLLGGDPGVGKSTLLLQAAVRVAGI--V 105
Query: 238 GEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIIDSI 297
G V+YVSGEES Q+ RA+R+ L+L TDIE + + + L P +I+DSI
Sbjct: 106 GR---VLYVSGEESAPQVRLRAERLRAVHSGLYLAPETDIERVEKHISELRPVVVIVDSI 162
Query: 298 QTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDA 357
QTV L G+A G L QV+ECT L R AK T IPVLL GHVTK G +AGPR +EH+VD
Sbjct: 163 QTVSLDGLAAVPGSLGQVRECTVRLTRLAKSTGIPVLLVGHVTKEGVLAGPRTMEHMVDT 222
Query: 358 VLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLA 417
VLY+EG++ +YR+LR VKNRFGST+E+GVFEM GL+ V NPS++FLS S + ++
Sbjct: 223 VLYLEGDRHHTYRVLRGVKNRFGSTNEIGVFEMDSAGLREVENPSRLFLS---SGAAPVS 279
Query: 418 GLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGLKLQEN 475
G V ++G+R L+EIQAL + T R G+ +R ++ +VL K+ GL L
Sbjct: 280 GSVVVSCVEGTRPLLVEIQALVSAAGYGTPRRMTAGVDYNRVILMAAVLEKRVGLMLSSQ 339
Query: 476 AIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRV 535
I++N V GV ++E A DL +A A+ SSF + P+P G IGE+GL GELR V ++ R+
Sbjct: 340 DIYVNAVGGVKISEPAADLGIALALVSSFWDRPVPAGTVVIGEVGLTGELRPVPQLGNRL 399
Query: 536 STVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVFT 581
AKLG+ + P ++ S G E + ++ E +++V T
Sbjct: 400 REAAKLGFDSAVFPAASGGS-NEPGGESLRLFAAGSVSEALDLVLT 444
>gi|53804316|ref|YP_113843.1| DNA repair protein RadA [Methylococcus capsulatus str. Bath]
gi|53758077|gb|AAU92368.1| DNA repair protein RadA [Methylococcus capsulatus str. Bath]
Length = 447
Score = 340 bits (872), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 198/469 (42%), Positives = 280/469 (59%), Gaps = 29/469 (6%)
Query: 116 WVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVV--QRTWLPQKPEEVQPVRLL 173
+ C+ CG + +W G C C T+ E E P V +R E PV L
Sbjct: 3 YRCTGCGQSQPKWSGQCGGCGQWNTLV-----EEIEAPAVGRRRAGYAGAAEGSMPVSLA 57
Query: 174 EVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIAD 233
EV++ D SGL E+ RVLGGG+VPGS +L+GGDPG+GKSTLLLQ A
Sbjct: 58 EVSRE----DLSRVTSGL--GELDRVLGGGVVPGSAILLGGDPGIGKSTLLLQTLAY--- 108
Query: 234 VHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALI 293
LG+ + +YV+GEES+ Q+ RA R+ + + + T +E I++ + P L+
Sbjct: 109 ---LGKSARTLYVTGEESLSQVSLRAHRLGLDGHGIQALAETSLERILDTAERHKPEVLV 165
Query: 294 IDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEH 353
+DSIQTVY + + G + QV+EC++ L+R+AK+++ V L GHVTK G +AGPRVLEH
Sbjct: 166 VDSIQTVYSEALQSAPGSVGQVRECSAQLVRYAKQSSTTVFLVGHVTKEGALAGPRVLEH 225
Query: 354 IVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDS 413
+VD VLY EG+ S YR++RS KNRFG+ +ELGVF M++ GL+ V NPS IFLS D
Sbjct: 226 MVDTVLYFEGDASSRYRVVRSFKNRFGAVNELGVFAMTETGLKEVRNPSAIFLSRGDED- 284
Query: 414 EFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVS--RHVNGIQASRADMIISVLMKQAGLK 471
+ G V V +GSR L+E+QAL S R V G++ +R M+++VL + G+
Sbjct: 285 --MPGSIVTVTREGSRPLLVEVQALVDESHLQSPRRLVVGMEMNRLAMLLAVLHRHGGVP 342
Query: 472 LQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRM 531
+ +F+N+V GV LTETAGDLA+A A+ SSF + P+P GE+GL GE+R V
Sbjct: 343 VAAQDVFVNLVGGVRLTETAGDLAIACAVVSSFRDRPVPGEWVIFGELGLNGEIRPVPNG 402
Query: 532 EKRVSTVAKLGYRKCIVP-KSAEKSLATLGFEQMEFIGCKNLKEVINVV 579
E+R+ AK G++ +VP K+A K G + I +NL+E IN +
Sbjct: 403 EERLREAAKHGFKYALVPAKNAPKQ----GVPGVSIIAARNLREAINAL 447
>gi|312874850|ref|ZP_07734869.1| DNA repair protein RadA [Lactobacillus iners LEAF 2053A-b]
gi|329920406|ref|ZP_08277138.1| DNA repair protein RadA [Lactobacillus iners SPIN 1401G]
gi|311089595|gb|EFQ48020.1| DNA repair protein RadA [Lactobacillus iners LEAF 2053A-b]
gi|328936082|gb|EGG32535.1| DNA repair protein RadA [Lactobacillus iners SPIN 1401G]
Length = 459
Score = 340 bits (872), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 191/471 (40%), Positives = 275/471 (58%), Gaps = 18/471 (3%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T + C +C Y + G C C + +++ + + + L +P +L
Sbjct: 5 KTQYRCKNCDYVSASYLGRCPNCGAWNQLEKETEVAKTTSNRLTASRLITAIGNNEPKKL 64
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
E++ KQ+ P S E+ RVLGGG+VPGSLVL+GGDPG+GKSTL+LQ+ IA
Sbjct: 65 SEIDIK-KQIRITTPFS-----ELNRVLGGGIVPGSLVLVGGDPGIGKSTLMLQIMGSIA 118
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+ H V+YVSGEES QI RA+R+ I+ EL LYS T++E+I E++ L P L
Sbjct: 119 NAHK------VLYVSGEESASQIKMRAERLHISDTELLLYSETNMENIREQIVDLKPEFL 172
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
+IDSIQT+ G QV+E T+ LL+ AK I V + GHVTK G IAGP++LE
Sbjct: 173 VIDSIQTMNEPSQDSMVGSATQVREVTAELLKIAKIDKITVFVIGHVTKEGAIAGPKILE 232
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EG+K SYR+LRSVKNRFG+T+E+G+FEM + GL V+NPS +FL E+ +
Sbjct: 233 HMVDTVLYFEGDKHHSYRILRSVKNRFGATNEIGMFEMKEEGLSEVTNPSAVFLDERLPN 292
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMKQAGL 470
S G A+ V ++G+R L +IQAL + R +G+ +R ++++VL K+ L
Sbjct: 293 S---TGSAIVVSLEGTRPILADIQALVTPTAFGYAKRTTSGLDYNRVALLLAVLEKRGNL 349
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ FL G+ L E A DLA+ A+ SS+ I F+GE+GL GE+R ++
Sbjct: 350 MLQNQDAFLTATGGIKLNEPAIDLAICMAVASSYKNKEIAVTDCFVGEVGLTGEIRRINN 409
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVFT 581
+E RV A G+++ VPK S +E +G +L E + + FT
Sbjct: 410 IEARVKEAATRGFKRIFVPKY-NVSAKLQSHTTIEIVGVISLMEALKIEFT 459
>gi|384136759|ref|YP_005519473.1| DNA repair protein RadA [Alicyclobacillus acidocaldarius subsp.
acidocaldarius Tc-4-1]
gi|339290844|gb|AEJ44954.1| DNA repair protein RadA [Alicyclobacillus acidocaldarius subsp.
acidocaldarius Tc-4-1]
Length = 448
Score = 340 bits (871), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 191/470 (40%), Positives = 279/470 (59%), Gaps = 28/470 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T +VC CG+ + +W G C AC T+ S + +P+ +
Sbjct: 5 KTRYVCQMCGHVEVKWMGRCPACGEWNTLVEEEVAPSGRFAPSKARVVPKPIVSIPAQAE 64
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
++ G+ + D+ VLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ IA
Sbjct: 65 NRLSTGLSECDF--------------VLGGGVVPGSLVLIGGDPGIGKSTLLLQVSHAIA 110
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
V+Y+SGEES QI RA+R+ EL++ + TD++ +E L P+ L
Sbjct: 111 K-----NGHRVLYISGEESATQIRLRAERLGTVHGELYVLAETDLDAALEAAVELKPQFL 165
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
I+DSIQTV+ G+A + G + QV+ECT LLR AK ++ + GHVTK G IAGPR+LE
Sbjct: 166 IVDSIQTVFRPGLASAPGSVAQVRECTGLLLRVAKAESMATFIVGHVTKDGAIAGPRMLE 225
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VDAVLY EG++ YR+LR+VKNRFGST+EL VFEM GL+ +SNPS++FLSE+
Sbjct: 226 HMVDAVLYFEGDRHHMYRVLRAVKNRFGSTNELAVFEMRDDGLREISNPSELFLSERR-- 283
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMKQAGL 470
E G AV M+G R L+E+QAL S S T R G R +M+++VL ++ G+
Sbjct: 284 -EVAPGSAVVCAMEGRRPLLLEVQALVASTSFGTPRRMTTGADLQRMNMLLAVLERRLGM 342
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
+L ++N+ GV + E A DL +A A+ +S + P+ G+ +IGE+GL E+R V+R
Sbjct: 343 QLGSCDAYVNIAGGVRVEEPAADLGIALALVASHRDRPLRPGV-YIGEVGLTAEVRAVTR 401
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+ +R+ KLG+ +CIVP A G ME + +++++ I+ F
Sbjct: 402 LAERIREARKLGFHRCIVPAGQSVPEAVPG---MEIVQVRSVQDAIDQAF 448
>gi|386587111|ref|YP_006083513.1| DNA repair protein RadA [Streptococcus suis D12]
gi|353739257|gb|AER20265.1| DNA repair protein RadA [Streptococcus suis D12]
Length = 455
Score = 340 bits (871), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 190/470 (40%), Positives = 277/470 (58%), Gaps = 24/470 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T +VC C Y ++ G C C S + + V T +P ++ V
Sbjct: 7 KTTFVCQSCEYHSPKYLGRCPNCGSWSSFVEEVEVAEVKNERVSLTGEKTRPMKLNEVSS 66
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
++V + ++ E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ ++
Sbjct: 67 IQVARTKTNME-----------EFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLS 115
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+ V+YVSGEES +QI RA+R+ E +LY+ T+++ I +++ + P L
Sbjct: 116 TI------GTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSIRTEIEKIKPDFL 169
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQT+ ++ G + QV+E T+ L++ AK NI + GH+TK G +AGPR LE
Sbjct: 170 IIDSIQTIMSPDISSVQGSVSQVREVTNELMQIAKTNNIATFIVGHMTKEGTLAGPRTLE 229
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS++FL E+
Sbjct: 230 HMVDTVLYFEGERQHTFRILRAVKNRFGSTNEIGIFEMQSQGLVEVLNPSEVFLEERLDG 289
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
+ G A+ V M+G+R L E+QAL R G+ +RA +I++VL K+AGL
Sbjct: 290 A---TGSAIVVTMEGTRPILAEVQALVTPTMFGNAKRTTTGLDFNRASLIMAVLEKRAGL 346
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ +L GV L E A DLAVA A+ SS+ + P FIGEIGL GE+R V+R
Sbjct: 347 LLQNQDAYLKSAGGVKLDEPAIDLAVAVALASSYKDKPTNPQECFIGEIGLTGEIRRVNR 406
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+E+R++ AKLG+ K PK++ + +++ IG + EV+ VF
Sbjct: 407 IEQRINEAAKLGFTKVYAPKNSLTGIKVP--KEITVIGVTTIGEVLQKVF 454
>gi|325681502|ref|ZP_08161027.1| DNA repair protein RadA [Ruminococcus albus 8]
gi|324106769|gb|EGC01060.1| DNA repair protein RadA [Ruminococcus albus 8]
Length = 458
Score = 340 bits (871), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 194/467 (41%), Positives = 280/467 (59%), Gaps = 24/467 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVR- 171
+T++VCS+CGY +W G C C T E E V RT K V+ V
Sbjct: 5 KTSYVCSNCGYETSKWNGKCPDCGEWNTF------EEVELQVSARTGGKAKSVTVKDVSD 58
Query: 172 -LLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAI 230
+L +N + +G+ +E+ RVLGGGLV GSLVL+GG+PG+GKST+LLQ+
Sbjct: 59 SILNINSVDASHNEIRYDTGM--HELDRVLGGGLVKGSLVLLGGEPGIGKSTMLLQICQT 116
Query: 231 IADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPR 290
+ D H ++YVSGEES QI RA+R+ + + L+L + D E I + P
Sbjct: 117 MGDDH------TILYVSGEESTRQIKLRANRLGVNNDNLYLLAENDAESICAAITKEKPE 170
Query: 291 ALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRV 350
+IIDSIQT+ + G++ + G + QV+ECT+ +R AK IP+ + GHV K G IAGP+V
Sbjct: 171 IVIIDSIQTMSISGISSAQGSVTQVRECTNLFMRTAKSEEIPIFIVGHVNKDGAIAGPKV 230
Query: 351 LEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQH 410
+EHIVD VLY EG++ +YR+LR+VKNRFGST+E+GVFEM+ GL V NPS + L +
Sbjct: 231 MEHIVDCVLYFEGQRNLTYRILRAVKNRFGSTNEIGVFEMADSGLLEVENPSMLMLEGRP 290
Query: 411 SDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVS---RHVNGIQASRADMIISVLMKQ 467
+ ++G VA IM+GSR + E+QAL VS S+ S R G R +I++VL K+
Sbjct: 291 VN---VSGSCVACIMEGSRPIMAEVQAL-VSKSSSSQPKRTATGFDYYRMSIILAVLEKR 346
Query: 468 AGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRM 527
G +F+N+V G+ L +TA DL VA A+ SS + + + GEIGLGGELR
Sbjct: 347 LGYFFGGLDVFINIVGGLKLDDTAADLTVAMALYSSVTDKVVDDKTIAFGEIGLGGELRN 406
Query: 528 VSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKE 574
++ E+R+ ++G+ +CI+P K L T + M+ IG +++KE
Sbjct: 407 ITHAEQRIQEAERMGFERCILPYYTVKKLNTAKY-NMQIIGARSIKE 452
>gi|307566359|ref|ZP_07628798.1| DNA repair protein RadA [Prevotella amnii CRIS 21A-A]
gi|307344936|gb|EFN90334.1| DNA repair protein RadA [Prevotella amnii CRIS 21A-A]
Length = 465
Score = 340 bits (871), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 191/462 (41%), Positives = 276/462 (59%), Gaps = 38/462 (8%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMK-------RYSAGESDEGPVVQRTW----- 159
++T +VCS CG +W G C C T K R ++ ++Q+
Sbjct: 4 DKTAYVCSYCGQESSKWIGKCPNCGQWNTFKEIKIAATRNTSATKHAATMLQKAGMGLIA 63
Query: 160 -LPQKPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGV 218
L KP+ + + + D RI ++ E+ RVLGGG+VPGS++L+GG+PG+
Sbjct: 64 GLAHKPQLLCDISSTD--------DPRIDMNDA---ELNRVLGGGMVPGSIILLGGEPGI 112
Query: 219 GKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIAT-EELFLYSSTDI 277
GKSTL LQ L V+YVSGEES QI RA+R+ + + S T +
Sbjct: 113 GKSTLTLQTI--------LHLNFKVLYVSGEESPNQIKMRAERITKNIPNNVVILSETSL 164
Query: 278 EDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAG 337
E I E + + P+ L+IDSIQT+ V S G + QV+EC +ALLRFAK + +PV+L G
Sbjct: 165 EHIFEHAKEVMPQLLVIDSIQTISTEEVDSSPGSITQVRECAAALLRFAKTSGVPVILIG 224
Query: 338 HVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQA 397
H+ K G IAGP+VLEHIVD V+ EG++ YR+LRS+KNRFGST ELG++EM Q GL+
Sbjct: 225 HINKEGSIAGPKVLEHIVDTVIQFEGDQHYMYRILRSIKNRFGSTSELGIYEMQQEGLRQ 284
Query: 398 VSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQAS 455
VSNPS++ L+ H E L+G+A++ ++G+R FL+E QAL S + T R G
Sbjct: 285 VSNPSELLLTGNH---EGLSGIAISNAIEGARPFLVETQALVSSAAYGTPQRSTTGFDGR 341
Query: 456 RADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAF 515
R +M+++VL K+ G K+ + +FLN+ G+ +T+ A DL++ AAI SS L+ PI G
Sbjct: 342 RLNMLLAVLEKRVGFKIMQKDVFLNITGGIRVTDMAMDLSIIAAIISSNLDLPIEQGWCM 401
Query: 516 IGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLA 557
GE+GL GE+R V R+E+R++ KLG++ I+PK K L
Sbjct: 402 CGEVGLSGEVRPVCRIEQRIAEGEKLGFKDIIIPKYNIKGLT 443
>gi|317481394|ref|ZP_07940462.1| DNA repair protein RadA [Bacteroides sp. 4_1_36]
gi|316902490|gb|EFV24376.1| DNA repair protein RadA [Bacteroides sp. 4_1_36]
Length = 455
Score = 340 bits (871), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 193/470 (41%), Positives = 282/470 (60%), Gaps = 22/470 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T +VCS+CG +W G C +C G Y + V +R + + +PV L
Sbjct: 5 KTVYVCSNCGQDSPKWVGKCPSC---GMWNTYVEEVVRKEVVNKRPVSGIETAKAKPVTL 61
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
E+ + P L E+ RVLGGGLV GSLVLIGG+PG+GKSTL+LQ I
Sbjct: 62 HEIVADDE------PRIDLHDAELNRVLGGGLVQGSLVLIGGEPGIGKSTLVLQTVLRIP 115
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+ ++YVSGEES Q+ RADR+ A+ + + T +E I ++ + P +
Sbjct: 116 EKR-------ILYVSGEESTRQLKLRADRLTSASSDCLIVCETSLEQIYVHIKNIRPDIV 168
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQT+ + S G + QV+EC++++LRFAK+T+ V+L GH+ K G IAGP+VLE
Sbjct: 169 IIDSIQTISTETLESSPGSIAQVRECSASILRFAKETHTAVILIGHINKEGSIAGPKVLE 228
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
HIVD VL EG++ YR+LRS+KNRFGST ELG++EM Q GL+ VSNPS++ LS+ H
Sbjct: 229 HIVDTVLQFEGDQHYMYRILRSIKNRFGSTAELGIYEMRQDGLRQVSNPSELLLSQDH-- 286
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
E ++G+A+A ++G R F IE QAL S R G R +M+++VL K+ G
Sbjct: 287 -EGMSGIAIASAIEGIRPFPIETQALVSSAVYGNPQRSATGFDIRRMNMLLAVLEKRVGF 345
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
KL + +FLN+ G+ + + A DLAV +AI SS ++ I + GEIGL GE+R V+R
Sbjct: 346 KLAQKDVFLNIAGGLKVNDPAIDLAVISAILSSNMDTAIEPEVCMAGEIGLSGEIRPVNR 405
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+E+R+ KLG+++ I+PK + L T ++E I + ++E +F
Sbjct: 406 IEQRIGEAEKLGFKRFILPKYNMQGLNTQKI-KIELIPVRKVEEAFRALF 454
>gi|425738219|ref|ZP_18856485.1| DNA repair protein RadA [Staphylococcus massiliensis S46]
gi|425480229|gb|EKU47397.1| DNA repair protein RadA [Staphylococcus massiliensis S46]
Length = 456
Score = 340 bits (871), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 194/472 (41%), Positives = 289/472 (61%), Gaps = 33/472 (6%)
Query: 116 WVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQK---PEEVQPVRL 172
+ C CG +W G C C + M+ VV+R P K + +P ++
Sbjct: 8 YECMACGAQSPKWNGKCMNCGAWNQMEE----------VVERKSTPSKHGIKSDKKPAKV 57
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
+++ ++ RI SG +E RVLGGG+V GSLVLIGGDPG+GKSTLLLQM A
Sbjct: 58 QKLSDVKQETTPRIQ-SG--NDEFDRVLGGGIVSGSLVLIGGDPGIGKSTLLLQMCA--- 111
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
L + V+Y++GEES+ Q RA+R+ + EL ++S TD+E I E V+ P +
Sbjct: 112 ---KLSKQKKVLYITGEESLNQTKLRAERLSEDSSELNVFSETDLEVIHETVKHTEPDMI 168
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
++DSIQT+Y ++ + G + QV+E T +L+ AK+ NI + GHVTK G IAGPR+LE
Sbjct: 169 VVDSIQTIYHPEISSAPGSVSQVRESTQSLMNIAKQMNIATFIVGHVTKEGQIAGPRLLE 228
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EG++ +YR+LR+VKNRFGST+E+G+FEM GL+AV NPS++FL E+
Sbjct: 229 HMVDTVLYFEGDEHHAYRILRAVKNRFGSTNEMGIFEMKHSGLKAVRNPSEMFLEER--- 285
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVS---RHVNGIQASRADMIISVLMKQAG 469
S+ + G + M+G+R LIE+Q+L V+ +T + R GI +R ++++VL K+
Sbjct: 286 SKNVPGSTIVATMEGTRPLLIEVQSL-VTPTTFNNPRRMATGIDHNRLSLLMAVLEKKEN 344
Query: 470 LKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVS 529
LQ+ ++ V GV LTE A DLAV A+ SSF + FIGE+GL GE+R VS
Sbjct: 345 YLLQQQDAYIKVAGGVRLTEPAVDLAVIMAVASSFKNQAVDGLDCFIGEVGLTGEIRRVS 404
Query: 530 RMEKRVSTVAKLGYRKCIVPKSAEKSLATLGF-EQMEFIGCKNLKEVINVVF 580
R+E+RV KLG+++ I+PK+ +L + E ++ IG ++ +E + +
Sbjct: 405 RIEQRVQEAEKLGFKRVIIPKT---NLGGWDYPEGIKVIGVESTREALAIAL 453
>gi|425472685|ref|ZP_18851526.1| DNA repair protein radA homolog [Microcystis aeruginosa PCC 9701]
gi|389881211|emb|CCI38223.1| DNA repair protein radA homolog [Microcystis aeruginosa PCC 9701]
Length = 508
Score = 340 bits (871), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 196/475 (41%), Positives = 282/475 (59%), Gaps = 51/475 (10%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKP------E 165
+RT ++CS CG QW G C +C++ GT++ + V + W +P
Sbjct: 4 SRTIYICSACGAESPQWLGKCPSCDTYGTLEEQVMAGGNNPAVNRPGWQNSRPNNGKGQR 63
Query: 166 EVQP---VRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKST 222
QP VR E+ + ++ R P SG E RVLGGG+VPGSLVLIGGDPG+GKST
Sbjct: 64 NPQPRISVRFSEITQYEQE---RFP-SGY--GEFDRVLGGGIVPGSLVLIGGDPGIGKST 117
Query: 223 LLLQMAAIIADVHDLGEPSP-VVYVSGEESVEQIGNRADRMMIAT--------------- 266
LLLQ+ + L + P ++YVS EES +QI RA R+ +
Sbjct: 118 LLLQVT------NQLAQRLPRILYVSAEESGQQIKLRAARLGVGVVPVESENNGNGKEKK 171
Query: 267 ---------EELFLYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKE 317
L++ TD+E+I+ +++ L P+ +IDSIQT+Y + + G + QV+E
Sbjct: 172 ASESTAELDNHLYVLPETDLEEILRELESLRPQVAVIDSIQTLYFGALTSAPGSVAQVRE 231
Query: 318 CTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKN 377
CTSAL++ AK+ NI +L+ GHVTK G IAGPRVLEH+VD VLY EG++++S+RLLRSVKN
Sbjct: 232 CTSALMQVAKRENITLLIVGHVTKEGAIAGPRVLEHLVDTVLYFEGDRYASHRLLRSVKN 291
Query: 378 RFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQA 437
RFG+T E+G+FEM GL V NPS++FL + EF G A V +G+R ++E+QA
Sbjct: 292 RFGATHEIGIFEMVDHGLVEVENPSELFLGNR---DEFSPGTATVVACEGTRPIVVELQA 348
Query: 438 LCVSGSTVS--RHVNGIQASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLA 495
L S S R GI+ +R I++VL K+ G+ L + ++ G+ + E A DL
Sbjct: 349 LVSPTSYASPRRSTTGIEYNRLQQILAVLEKRVGIPLSKLDAYVASAGGLGVEEPAADLG 408
Query: 496 VAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPK 550
VA AI +SF + + IGE+GLGG++R+VS+ME R+ AKLG+++ IVP+
Sbjct: 409 VAIAIVASFRDRVVDPRTVLIGEVGLGGQVRLVSQMELRLKEAAKLGFKRAIVPR 463
>gi|34540079|ref|NP_904558.1| DNA repair protein RadA [Porphyromonas gingivalis W83]
gi|419969740|ref|ZP_14485264.1| DNA repair protein RadA [Porphyromonas gingivalis W50]
gi|34396390|gb|AAQ65457.1| DNA repair protein RadA [Porphyromonas gingivalis W83]
gi|392612053|gb|EIW94770.1| DNA repair protein RadA [Porphyromonas gingivalis W50]
Length = 461
Score = 340 bits (871), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 181/439 (41%), Positives = 270/439 (61%), Gaps = 19/439 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T +VC CG +W G C AC + G ++++P++ ++ +P L
Sbjct: 5 KTIYVCRSCGTKYAKWQGNCNACGEWNCIDEEKVPAPASGKHAAKSFMPRE-QDNRPRLL 63
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
+V G ++ RI L E RVLGGG+V G+ VL+GG+PG+GKSTL+LQ +
Sbjct: 64 QDVESGDEE---RIRLGD---EEFDRVLGGGIVKGAFVLLGGEPGIGKSTLILQTVLRLP 117
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+ L YVSGEES Q+ RA+R+ A ++Y T+IE I+ + + L+P L
Sbjct: 118 QLRTL-------YVSGEESARQLKMRAERLGQAMNGCYVYCETNIERILSRAEELTPDLL 170
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
+IDSIQTVY + SAG + Q++EC + LL++ K T IPV++ GH+TK G IAGP+VLE
Sbjct: 171 VIDSIQTVYTEEMESSAGSVGQIRECAALLLKYCKTTGIPVIVIGHITKEGSIAGPKVLE 230
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
HIVD VL +G+K YR+LR KNR+GST ELG++EM Q GL+ V NPS+ ++ D
Sbjct: 231 HIVDTVLLFDGDKHHLYRILRGQKNRYGSTSELGIYEMRQDGLRGVENPSEHLITRNRED 290
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
L+G+A+AV M+G R LIE QAL S + R G R +M+++VL K+AG
Sbjct: 291 ---LSGIAIAVAMEGIRPILIEAQALVSSAIYANPQRSATGFDIRRMNMLLAVLEKRAGF 347
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
KL + +FLN+ G+ + + A DLAV +A+ +S L+ IP + GE+GL GE+R VSR
Sbjct: 348 KLIQKDVFLNIAGGIKIADPATDLAVISAVLASSLDIVIPPAVCMTGEVGLSGEIRPVSR 407
Query: 531 MEKRVSTVAKLGYRKCIVP 549
+E+R++ ++G+++ +VP
Sbjct: 408 IEQRITEARRIGFKEILVP 426
>gi|224026545|ref|ZP_03644911.1| hypothetical protein BACCOPRO_03302 [Bacteroides coprophilus DSM
18228]
gi|224019781|gb|EEF77779.1| hypothetical protein BACCOPRO_03302 [Bacteroides coprophilus DSM
18228]
Length = 457
Score = 340 bits (871), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 190/471 (40%), Positives = 284/471 (60%), Gaps = 22/471 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T +VC++CG +W G C +C T E PV + + +P L
Sbjct: 5 KTVYVCTNCGQESPKWAGKCPSCGQWNTFVEEVV--RKEAPVAKHVAHGIESIRSKPQLL 62
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
E+ G +Q RI + E+ RVLGGGLV GSL LIGG+PG+GKSTL+LQ ++
Sbjct: 63 HEITAGEEQ---RIDMGD---EELNRVLGGGLVEGSLTLIGGEPGIGKSTLILQTVLRLS 116
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRM-MIATEELFLYSSTDIEDIVEKVQPLSPRA 291
V+Y+SGEES Q+ RADR+ A +L + T +E I ++ +P
Sbjct: 117 Q-------KKVLYISGEESARQLKLRADRIPHPANSDLLIACETSLEQIFTNIKNTAPDL 169
Query: 292 LIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVL 351
+IIDSIQT+ + S G ++QV+EC++ +L+FAK+T PV+L GH+ K G IAGP+VL
Sbjct: 170 VIIDSIQTISTETIDSSPGSIVQVRECSAPILKFAKETGTPVILIGHINKEGSIAGPKVL 229
Query: 352 EHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHS 411
EHIVD VL EG++ YR+LRS+KNRFGST ELG++EM Q GL+ VSNPS++ L++ H
Sbjct: 230 EHIVDTVLQFEGDQHYMYRILRSIKNRFGSTAELGIYEMRQDGLRQVSNPSELLLTQDH- 288
Query: 412 DSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMKQAG 469
E ++G+A+A ++G R FLIE+QAL + + R G R +M+++VL K+ G
Sbjct: 289 --EGMSGVAIACAVEGIRPFLIEVQALVSTAAYGMPQRSATGFDLRRMNMLLAVLEKRVG 346
Query: 470 LKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVS 529
KL + +FLN+ G+ + + A DLAV +AI SS ++ I G+ GE+GL GE+R V+
Sbjct: 347 FKLAQKDVFLNIAGGLKVNDPAIDLAVISAILSSNMDTEIEAGVCMAGEVGLSGEIRPVN 406
Query: 530 RMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
R+E+R+S KLG+ + ++PK + L ++E I + ++E +F
Sbjct: 407 RIEQRISEAEKLGFTRMLIPKHNLQGLDRKKI-KIELIPVRKVEEAFRQLF 456
>gi|379724696|ref|YP_005316827.1| protein RadA [Paenibacillus mucilaginosus 3016]
gi|378573368|gb|AFC33678.1| RadA [Paenibacillus mucilaginosus 3016]
Length = 469
Score = 340 bits (871), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 200/492 (40%), Positives = 281/492 (57%), Gaps = 42/492 (8%)
Query: 101 DLVGTRKKGKANRTNWVCSDCGYTDGQWWGMCRAC----------ESVGTMKRYSAGESD 150
+L G+ +T + CS+CGY +W G C C E+V + + G S+
Sbjct: 7 ELKGSDNSMAKTKTKFFCSECGYESPKWLGKCPGCQAWNSFVEEIETVSKSRGFHGGASE 66
Query: 151 EGPVVQRTWLPQKPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLV 210
+ + EE R++ N+ E+ RVLGGG+VPGSL+
Sbjct: 67 KKEKAVSIINIESSEEA---RIITENR-----------------ELNRVLGGGIVPGSLI 106
Query: 211 LIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELF 270
L+GGDPG+GKSTLLLQ + + + V+Y+SGEESV Q RADR+ + LF
Sbjct: 107 LVGGDPGIGKSTLLLQTSYELTK-----QECKVLYISGEESVRQTKLRADRLQAISPLLF 161
Query: 271 LYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTN 330
+ S T+ + I + + P ++IDSIQTVY V + G + QV+ECT +R AK
Sbjct: 162 VLSETNAQFIEAAIDEIRPDFVVIDSIQTVYHPAVESAPGSVSQVRECTGHFMRIAKGKG 221
Query: 331 IPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEM 390
I +L GHVTK G IAGPR+LEH+VD VLY EGE+ SYRLLR+VKNRFGST+E+G+FEM
Sbjct: 222 IATVLVGHVTKEGAIAGPRMLEHMVDCVLYFEGERHHSYRLLRAVKNRFGSTNEIGIFEM 281
Query: 391 SQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVS--RH 448
++GL VSNPS++FLSE+ ++G V M+G+R L+E+QAL + S R
Sbjct: 282 QEIGLVEVSNPSELFLSERPLG---VSGSTVVAAMEGTRPVLVELQALVSQTNFPSPRRM 338
Query: 449 VNGIQASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFP 508
G +R +II+VL K+ G+ LQ +LN+ GV L E A DLAVA +I SSF + P
Sbjct: 339 ATGYDHNRLSLIIAVLEKRMGMFLQNQDAYLNIAGGVKLDEPAVDLAVAVSIASSFRDQP 398
Query: 509 IPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIG 568
IGEIGL GE+R VSR+++RV KLG+++ I+P+ + K +E IG
Sbjct: 399 TQPFDVIIGEIGLTGEVRGVSRVDQRVREAQKLGFKRIILPQKSLKGWTPPA--GIEIIG 456
Query: 569 CKNLKEVINVVF 580
+ E ++
Sbjct: 457 VNTVAEALSAAL 468
>gi|315653981|ref|ZP_07906897.1| DNA repair protein RadA [Lactobacillus iners ATCC 55195]
gi|315488677|gb|EFU78323.1| DNA repair protein RadA [Lactobacillus iners ATCC 55195]
Length = 459
Score = 340 bits (871), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 191/471 (40%), Positives = 275/471 (58%), Gaps = 18/471 (3%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T + C +C Y + G C C + +++ + + + L +P +L
Sbjct: 5 KTQYRCKNCDYVSASYLGRCPNCGAWNQLEKETEVAKTTSNRLTASRLITSIGNNEPKKL 64
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
E++ KQ+ P S E+ RVLGGG+VPGSLVL+GGDPG+GKSTL+LQ+ IA
Sbjct: 65 SEIDIK-KQIRITTPFS-----ELNRVLGGGIVPGSLVLVGGDPGIGKSTLMLQIMGSIA 118
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+ H V+YVSGEES QI RA+R+ I+ EL LYS T++E+I E++ L P L
Sbjct: 119 NSHK------VLYVSGEESASQIKMRAERLHISDTELLLYSETNMENIREQIVDLKPEFL 172
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
+IDSIQT+ G QV+E T+ LL+ AK I V + GHVTK G IAGP++LE
Sbjct: 173 VIDSIQTMNEPSQDSMVGSATQVREVTAELLKIAKIDKITVFVIGHVTKEGAIAGPKILE 232
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EG+K SYR+LRSVKNRFG+T+E+G+FEM + GL V+NPS +FL E+ +
Sbjct: 233 HMVDTVLYFEGDKHHSYRILRSVKNRFGATNEIGMFEMKEEGLSEVTNPSAVFLDERLPN 292
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMKQAGL 470
S G A+ V ++G+R L +IQAL + R +G+ +R ++++VL K+ L
Sbjct: 293 S---TGSAIVVSLEGTRPILADIQALVTPTAFGYAKRTTSGLDYNRVALLLAVLEKRGNL 349
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ FL G+ L E A DLA+ A+ SS+ I F+GE+GL GE+R ++
Sbjct: 350 MLQNQDAFLTATGGIKLNEPAIDLAICMAVASSYKNKEIAVTDCFVGEVGLTGEIRRINN 409
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVFT 581
+E RV A G+++ VPK S +E +G +L E + + FT
Sbjct: 410 IEARVKEAATRGFKRIFVPK-YNVSAKLQSHTTIEIVGVISLMEALKIEFT 459
>gi|294674313|ref|YP_003574929.1| DNA repair protein RadA [Prevotella ruminicola 23]
gi|294471945|gb|ADE81334.1| DNA repair protein RadA [Prevotella ruminicola 23]
Length = 466
Score = 340 bits (871), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 184/446 (41%), Positives = 273/446 (61%), Gaps = 20/446 (4%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYS-AGESDEGPVVQRTWLPQ----KPEE 166
++ +VCS+CG +W G C AC T K A S R L +
Sbjct: 4 DKIAYVCSNCGQESPKWIGKCPACGQWNTFKEIKVAPSSTPKTAAARGGLSAGTSAQSSA 63
Query: 167 VQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQ 226
+ ++L + + D RI + E+ RVLGGGLVPGS+VL+GG+PG+GKSTL LQ
Sbjct: 64 LHAGKVLRLRDISSKDDPRIDM---HDAELNRVLGGGLVPGSIVLLGGEPGIGKSTLSLQ 120
Query: 227 MAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQP 286
+ + ++YVSGEES Q+ RA+R+ E L + +E I + ++
Sbjct: 121 TMLNMPE-------KKILYVSGEESAHQLKMRAERLGGENENFLLLTENSLETIFDHIKE 173
Query: 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIA 346
+ P ++IDSIQT+ V SAG + QV+EC SALLRFAK + +PV+L GH+TK G +A
Sbjct: 174 VQPELIVIDSIQTISTEDVESSAGSIAQVRECASALLRFAKTSGVPVILIGHITKEGTLA 233
Query: 347 GPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFL 406
GP++LEHIVD V+ EG++ YR+LRS+KNRFGST ELG++EM Q GL+ VSNPS++ L
Sbjct: 234 GPKILEHIVDTVIQFEGDQHYMYRILRSIKNRFGSTAELGIYEMLQNGLRQVSNPSELLL 293
Query: 407 SEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVL 464
++ D + L+G+A+ ++G R FL+E QAL + + T R G R +M+++VL
Sbjct: 294 TQ---DRDGLSGIAITSAIEGIRPFLVETQALVSTAAYGTPQRSATGFDQRRLNMLLAVL 350
Query: 465 MKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGE 524
K+ G KL + +F+N+ G+ +T+ A DL+V AA+ SS ++ PI +G GE+GL GE
Sbjct: 351 EKRVGFKLAQKDVFVNIAGGLRVTDLAMDLSVIAAVLSSNVDTPIESGWCMAGEVGLSGE 410
Query: 525 LRMVSRMEKRVSTVAKLGYRKCIVPK 550
+R V+R+E+R++ KLG+ I+PK
Sbjct: 411 VRPVNRIEQRIAEAEKLGFTDMIIPK 436
>gi|219666458|ref|YP_002456893.1| DNA repair protein RadA [Desulfitobacterium hafniense DCB-2]
gi|219536718|gb|ACL18457.1| DNA repair protein RadA [Desulfitobacterium hafniense DCB-2]
Length = 449
Score = 340 bits (871), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 202/471 (42%), Positives = 282/471 (59%), Gaps = 31/471 (6%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T + C CG +W G C C T+ VV+R + P V+ L
Sbjct: 5 KTRFFCQSCGQESPRWLGKCPGCGEWNTLVE---------EVVERAAAKRTPLGVKATPL 55
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
E+ + + R+ SG E+ RVLGGG+VPGS VL+GG+PG+GKSTLLLQ A ++A
Sbjct: 56 TEIQI---REEERVS-SG--SQELNRVLGGGIVPGSFVLLGGEPGIGKSTLLLQTAGLLA 109
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
D V+Y+SGEES +QI RA+R+ I L + + T +E + + + P L
Sbjct: 110 KGMD------VLYISGEESEKQIKLRAERLGIKESRLHILTETRLEVVRDVALAMGPGLL 163
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
I+DSIQT+ L + +AG + QV+E + L+R AK+ IP+ L GHVTK G IAGPRVLE
Sbjct: 164 IVDSIQTMVLEELQAAAGSVSQVREGAAFLMRLAKEEEIPIFLVGHVTKEGAIAGPRVLE 223
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
HIVD VLY EG++ YRLLR+VKNRFGST+E+GVFEM + GL V NPSK+FL E +
Sbjct: 224 HIVDTVLYFEGDRHHVYRLLRAVKNRFGSTNEIGVFEMHEDGLVEVPNPSKVFLGENSAT 283
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVS---RHVNGIQASRADMIISVLMKQAG 469
+ G +VAVI++GSR L+EIQAL V+ +T R GI +R M+++VL K+ G
Sbjct: 284 A---PGSSVAVIVEGSRPLLVEIQAL-VTPTTYGPPRRTATGIDYNRILMLLAVLDKKVG 339
Query: 470 LKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVS 529
L L +F+N+ G+ + E DLA AAI SS E P+ A +GE+GL GE+R +S
Sbjct: 340 LHLGAQDVFINIAGGIRIDEPGVDLACIAAIASSLGERPLKR-YALVGEVGLTGEVRGIS 398
Query: 530 RMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
++EKRV KLG+ CI+P+ ++ G I K ++E + V+F
Sbjct: 399 QIEKRVKEAVKLGFEGCIIPRINVSAVKVPG--NFTVIAVKTVEEAVQVMF 447
>gi|299147713|ref|ZP_07040776.1| DNA repair protein RadA [Bacteroides sp. 3_1_23]
gi|298513896|gb|EFI37782.1| DNA repair protein RadA [Bacteroides sp. 3_1_23]
Length = 455
Score = 340 bits (871), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 186/470 (39%), Positives = 283/470 (60%), Gaps = 22/470 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T +VCS+CG +W G C +C G Y + P +R + ++ +P+ L
Sbjct: 5 KTVYVCSNCGQDSPKWVGKCPSC---GEWNTYVEEIVRKEPTNRRPVSGIETQKPKPLAL 61
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
++ + P + +E+ RVLGGGLV GSLVLIGG+PG+GKSTL++Q +
Sbjct: 62 SDIEADDE------PRINMHDDELNRVLGGGLVQGSLVLIGGEPGIGKSTLVMQTVLHMP 115
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
++YVSGEES Q+ RADR+ + + + T +E I ++ +P +
Sbjct: 116 K-------KKILYVSGEESARQLKLRADRLSDTSSDCLIVCETSLEQIYVHIKNTNPDLV 168
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQT+ + S G + QV+EC++++LRFAK+T+ PVLL GH+ K G IAGP+VLE
Sbjct: 169 IIDSIQTISTESIESSPGSIAQVRECSASILRFAKETHTPVLLIGHINKEGSIAGPKVLE 228
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
HIVD VL EG++ YR+LRS+KNRFGST ELG++EM Q GL+ VSNPS++ LS+ H
Sbjct: 229 HIVDTVLQFEGDQHYMYRILRSIKNRFGSTAELGIYEMRQDGLRQVSNPSELLLSQDH-- 286
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
E ++G+A+A ++G R FLIE QAL S R G R +M+++VL K+ G
Sbjct: 287 -EGMSGVAIASAIEGIRPFLIETQALVSSAVYGNPQRSATGFDLRRMNMLLAVLEKRVGF 345
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
KL + +FLN+ G+ + + A DL V +AI SS ++ I + GEIGL GE+R V+R
Sbjct: 346 KLAQKDVFLNIAGGLKVNDPAIDLPVISAILSSNMDAAIEPEVCMAGEIGLSGEIRPVNR 405
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+E+R+ KLG+++ ++PK + + T ++E + + ++E +F
Sbjct: 406 IEQRIGEAEKLGFKRFLLPKYNLQGIDTQKL-KIELVPVRKVEEAFRALF 454
>gi|429727940|ref|ZP_19262687.1| DNA repair protein RadA [Peptostreptococcus anaerobius VPI 4330]
gi|429150916|gb|EKX93807.1| DNA repair protein RadA [Peptostreptococcus anaerobius VPI 4330]
Length = 463
Score = 339 bits (870), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 175/443 (39%), Positives = 275/443 (62%), Gaps = 20/443 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGT-MKRYSAGES-DEGPVVQRTWLPQKPEEVQPV 170
RT +VC +CGY + +W G C C T ++ E+ E + +R + +PV
Sbjct: 5 RTKYVCQNCGYENPKWLGKCPECLQWNTFVEETEVKETPKEKAIKERALRASIKTDTKPV 64
Query: 171 RLLEVNKGMKQ-LDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAA 229
++ + ++ IP E+ RVLGGG++P SL+L+GGDPG+GKSTLLLQ++
Sbjct: 65 KINSIQSHREERFSTMIP-------ELDRVLGGGIIPASLILVGGDPGIGKSTLLLQVSN 117
Query: 230 IIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSP 289
IA ++YVSGEES QI RA R+ + ++ L++Y+ ++ I +++ + P
Sbjct: 118 NIAR-----SGKKLLYVSGEESENQIKMRAKRLGVDSDNLYIYTENNLAAIESQIEDIKP 172
Query: 290 RALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPR 349
A+++DSIQT+ + + G + Q+KE TS + +K I + GHVTK G +AGP+
Sbjct: 173 DAIVVDSIQTMISPEINAAPGTVSQIKEGTSKFMNISKSKGISTFIVGHVTKEGSLAGPK 232
Query: 350 VLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQ 409
+LEH+VD VLY EGE++++YRLLR+VKNRFGST+ELGVFEM GL+ + NPSK+ +SE+
Sbjct: 233 LLEHMVDTVLYFEGERYNTYRLLRAVKNRFGSTNELGVFEMKANGLEELENPSKVLISEK 292
Query: 410 HSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMKQ 467
SD+ +G + ++G+RS L+E+QAL + + R G+ +R +I++VL K
Sbjct: 293 PSDA---SGSVIVSTVEGTRSMLLELQALVATTNFGYPRRTTTGVDNNRVALILAVLEKV 349
Query: 468 AGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRM 527
GL++Q +F+N++ G+ + + + DL +A A+ SSF PI + GEIGL GE+R
Sbjct: 350 VGLQIQNQDVFVNIIGGLKINDPSMDLGIALAVASSFKNIPIDASVVVTGEIGLTGEVRT 409
Query: 528 VSRMEKRVSTVAKLGYRKCIVPK 550
VS +EKR+ KLG++K I+P+
Sbjct: 410 VSFIEKRIIECEKLGFKKMIIPR 432
>gi|425442908|ref|ZP_18823142.1| DNA repair protein radA homolog [Microcystis aeruginosa PCC 9717]
gi|389715918|emb|CCH99775.1| DNA repair protein radA homolog [Microcystis aeruginosa PCC 9717]
Length = 508
Score = 339 bits (870), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 197/475 (41%), Positives = 285/475 (60%), Gaps = 51/475 (10%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKP------E 165
+RT ++CS CG QW G C +C++ GT++ + V + W +P
Sbjct: 4 SRTIYICSACGAESPQWLGKCPSCDTYGTLEEQVMAGGNNPAVNRPGWQNSRPNNGKGQR 63
Query: 166 EVQP---VRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKST 222
QP VR E+ + ++ R P SG E RVLGGG+VPGSLVLIGGDPG+GKST
Sbjct: 64 NPQPRISVRFSEITQYEQE---RFP-SGY--GEFDRVLGGGIVPGSLVLIGGDPGIGKST 117
Query: 223 LLLQMAAIIADVHDLGEPSP-VVYVSGEESVEQIGNRADRM---MIATE----------- 267
LLLQ+ + L + P ++YVS EES +QI RA R+ ++A E
Sbjct: 118 LLLQVT------NQLAQRLPRILYVSAEESGQQIKLRAARLGVGVVAVESENNGNGKEKK 171
Query: 268 ----------ELFLYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKE 317
L++ TD+E+I+ +++ L P+ +IDSIQT+Y + + G + QV+E
Sbjct: 172 ASESTSELDNHLYVLPETDLEEILRELESLRPQVAVIDSIQTLYFGALTSAPGSVAQVRE 231
Query: 318 CTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKN 377
CTSAL++ AK+ NI +L+ GHVTK G IAGPRVLEH+VD VLY EG++++S+RLLRSVKN
Sbjct: 232 CTSALMQVAKRENITLLIVGHVTKEGAIAGPRVLEHLVDTVLYFEGDRYASHRLLRSVKN 291
Query: 378 RFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQA 437
RFG+T E+G+FEM GL V NPS++FL + EF G A V +G+R ++E+QA
Sbjct: 292 RFGATHEIGIFEMVDHGLVEVENPSELFLGNR---DEFSPGTATVVACEGTRPIVVELQA 348
Query: 438 LCVSGSTVS--RHVNGIQASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLA 495
L S S R GI+ +R I++VL K+ G+ L + ++ G+ + E A DL
Sbjct: 349 LVSPTSYASPRRSTTGIEYNRLQQILAVLEKRVGIPLSKLDAYVASAGGLGVEEPAADLG 408
Query: 496 VAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPK 550
VA A+ +SF + + IGE+GLGG++R+VS+ME R+ AKLG+++ IVP+
Sbjct: 409 VAIAVVASFRDRVVDPRTVLIGEVGLGGQVRLVSQMELRLKEAAKLGFKRAIVPR 463
>gi|229827964|ref|ZP_04454033.1| hypothetical protein GCWU000342_00012 [Shuttleworthia satelles DSM
14600]
gi|229792558|gb|EEP28672.1| hypothetical protein GCWU000342_00012 [Shuttleworthia satelles DSM
14600]
Length = 459
Score = 339 bits (870), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 194/476 (40%), Positives = 290/476 (60%), Gaps = 30/476 (6%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPE--EV 167
K ++T + C +CG +W G C C A S VV++T + E +V
Sbjct: 4 KGSKTVYFCQECGNESPKWLGQCPVC---------GAWNSFVEEVVEKTSSRAQREKRDV 54
Query: 168 QPVRLLEV-NKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQ 226
+P L E+ + K++ +P E+ RVLGGG+V GS+VL+GGDPG+GKSTLLLQ
Sbjct: 55 RPTHLSEIISSDEKRISSGMP-------ELDRVLGGGIVQGSMVLVGGDPGIGKSTLLLQ 107
Query: 227 MAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQP 286
+ + V+YVSGEES++QI RADRM ++L L T+++ I V
Sbjct: 108 VCRNLCS-----RKVDVLYVSGEESLQQIKIRADRMGTFDDQLSLLCETNLDIIRSVVDR 162
Query: 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIA 346
PR L+IDSIQT+Y V + G + QV+E T+ L++ AK NI V + GHVTK G +A
Sbjct: 163 SRPRVLVIDSIQTMYSETVGSAPGSVSQVRESTAVLMQIAKGMNITVFIVGHVTKEGLVA 222
Query: 347 GPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFL 406
GPRVLEH+VD VLY EG++ ++YR+LR VKNRFGSTDE+GVFEM Q GLQ V+NPS L
Sbjct: 223 GPRVLEHMVDTVLYFEGDRHAAYRVLRGVKNRFGSTDEIGVFEMCQNGLQEVANPSAFML 282
Query: 407 SEQHSDSEFLAGLAVAVIMDGSRSFLIEIQAL-CVSGSTVSRHV-NGIQASRADMIISVL 464
+ + + +G VA ++G+R L+EIQAL C S + R G +R +++++V+
Sbjct: 283 NGKPRGA---SGSVVACSIEGTRPILVEIQALVCHSNFNMPRRTAAGCDYNRVNLLMAVI 339
Query: 465 MKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGE 524
K+AGL+L E+ ++N+ G+ + E A DL + AI SS+ E P+P+ + GE+GL GE
Sbjct: 340 EKRAGLRLAESDAYINIAGGIRMNEPAVDLGIVLAIISSYKEMPVPDDLICFGEVGLSGE 399
Query: 525 LRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+R V+ E+R++ AKLG+ + I+PK + + Q++ +G +N++E + +
Sbjct: 400 VRAVNLAEQRIAEAAKLGFSRIIMPKVNLSGIRG-KYSQLDLVGVENVQEAMRAIL 454
>gi|337751754|ref|YP_004645916.1| protein RadA [Paenibacillus mucilaginosus KNP414]
gi|336302943|gb|AEI46046.1| RadA [Paenibacillus mucilaginosus KNP414]
Length = 507
Score = 339 bits (870), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 200/492 (40%), Positives = 281/492 (57%), Gaps = 42/492 (8%)
Query: 101 DLVGTRKKGKANRTNWVCSDCGYTDGQWWGMCRAC----------ESVGTMKRYSAGESD 150
+L G+ +T + CS+CGY +W G C C E+V + + G S+
Sbjct: 45 ELKGSDNSMAKTKTKFFCSECGYESPKWLGKCPGCQAWNSFVEEIETVSKSRGFHGGASE 104
Query: 151 EGPVVQRTWLPQKPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLV 210
+ + EE R++ N+ E+ RVLGGG+VPGSL+
Sbjct: 105 KKEKAVSIINIESSEEA---RIITENR-----------------ELNRVLGGGIVPGSLI 144
Query: 211 LIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELF 270
L+GGDPG+GKSTLLLQ + + + V+Y+SGEESV Q RADR+ + LF
Sbjct: 145 LVGGDPGIGKSTLLLQTSYELTK-----QECKVLYISGEESVRQTKLRADRLQAISPLLF 199
Query: 271 LYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTN 330
+ S T+ + I + + P ++IDSIQTVY V + G + QV+ECT +R AK
Sbjct: 200 VLSETNAQFIEAAIDEIRPDFVVIDSIQTVYHPAVESAPGSVSQVRECTGHFMRIAKGKG 259
Query: 331 IPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEM 390
I +L GHVTK G IAGPR+LEH+VD VLY EGE+ SYRLLR+VKNRFGST+E+G+FEM
Sbjct: 260 IATVLVGHVTKEGAIAGPRMLEHMVDCVLYFEGERHHSYRLLRAVKNRFGSTNEIGIFEM 319
Query: 391 SQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVS--RH 448
++GL VSNPS++FLSE+ ++G V M+G+R L+E+QAL + S R
Sbjct: 320 QEIGLVEVSNPSELFLSERPLG---VSGSTVVAAMEGTRPVLVELQALVSQTNFPSPRRM 376
Query: 449 VNGIQASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFP 508
G +R +II+VL K+ G+ LQ +LN+ GV L E A DLAVA +I SSF + P
Sbjct: 377 ATGYDHNRLSLIIAVLEKRMGMFLQNQDAYLNIAGGVKLDEPAVDLAVAVSIASSFRDQP 436
Query: 509 IPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIG 568
IGEIGL GE+R VSR+++RV KLG+++ I+P+ + K +E IG
Sbjct: 437 TQPFDVIIGEIGLTGEVRGVSRVDQRVREAQKLGFKRIILPQKSLKGWTPPA--GIEIIG 494
Query: 569 CKNLKEVINVVF 580
+ E ++
Sbjct: 495 VNTVAEALSAAL 506
>gi|347534159|ref|YP_004840829.1| DNA repair protein radA-like protein [Lactobacillus
sanfranciscensis TMW 1.1304]
gi|345504215|gb|AEN98897.1| DNA repair protein radA-like protein [Lactobacillus
sanfranciscensis TMW 1.1304]
Length = 460
Score = 339 bits (870), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 190/470 (40%), Positives = 281/470 (59%), Gaps = 20/470 (4%)
Query: 114 TNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRLL 173
T +VCS+CGY + G C C T + + ++D T + + ++ +P +
Sbjct: 6 TRFVCSNCGYVSPTYLGRCPNCGEWNTFEEETVTKNDT-KTANVTRVSFEGKKSRPTLID 64
Query: 174 EVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIAD 233
+V+ P + NE+ RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ ++
Sbjct: 65 DVDA------HDAPRYKIESNELNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSGQLSH 118
Query: 234 VHDLGEPSPVVYVSGEESVEQIGNRADRMMIAT-EELFLYSSTDIEDIVEKVQPLSPRAL 292
V+YV+GEES +Q+ R+DR+ + + L+++ TD+ I E + + P +
Sbjct: 119 Y-----GKRVLYVTGEESADQVKMRSDRLGVKHLDNLYVFPETDMTAIREAIANVKPDVV 173
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDS+QT+ VA + G + QV+ T+ L+ AK NI + + GHVTK G IAGP+ LE
Sbjct: 174 IIDSVQTMQEGDVASAVGSVSQVRGVTADLMNIAKTNNITIFVVGHVTKGGAIAGPKTLE 233
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EG+K +YRLLR+VKNRFGST+ELG+FEM GL+ V+NPS+IFL E+ +
Sbjct: 234 HMVDTVLYFEGDKHHAYRLLRAVKNRFGSTNELGIFEMVDTGLKEVANPSEIFLEERLHN 293
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
+ G A+ V M+G+R L+EIQAL R G+ +R +I++VL K+AGL
Sbjct: 294 A---TGSAIVVAMEGTRPILVEIQALITPSVFGNAQRTATGVDRNRVSLIMAVLEKRAGL 350
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ +L GV L E A DLA+A +I SS+ + +IGE+GL GE+R V R
Sbjct: 351 MLQNQDAYLKAAGGVKLVEPAIDLAMAISIASSYEDISTDPKECYIGELGLTGEIRRVDR 410
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+E+R+ KLG+ + IVPK L + F+ ++ +G ++E + V
Sbjct: 411 IEQRIREATKLGFSRVIVPKHNLDGLK-MDFD-IDVVGVTTIREALKVAL 458
>gi|331701834|ref|YP_004398793.1| DNA repair protein RadA [Lactobacillus buchneri NRRL B-30929]
gi|406027308|ref|YP_006726140.1| DNA repair protein radA [Lactobacillus buchneri CD034]
gi|329129177|gb|AEB73730.1| DNA repair protein RadA [Lactobacillus buchneri NRRL B-30929]
gi|405125797|gb|AFS00558.1| DNA repair protein radA [Lactobacillus buchneri CD034]
Length = 457
Score = 339 bits (870), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 184/443 (41%), Positives = 268/443 (60%), Gaps = 26/443 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQ---RTWL-PQKPEEVQ 168
+T +VC +CGY ++ G C C T+ + + Q R + KPE +
Sbjct: 5 KTQFVCQNCGYISPRYLGRCPNCNEWNTLVEETITPKNSTMATQSLRRNGIHDNKPESIN 64
Query: 169 PVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMA 228
V K + ++ + E+ RVLGGG+VPGSL+LIGGDPG+GKSTL+LQ++
Sbjct: 65 KVEF------HKDIRFKTDME-----ELNRVLGGGVVPGSLILIGGDPGIGKSTLMLQVS 113
Query: 229 AIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLS 288
L + ++YVSGEES QI RADR+ + E L++Y TD++ I + + +
Sbjct: 114 G------QLSKSGKILYVSGEESASQIKMRADRLGVNGENLYVYPETDMDVIKDTINEMK 167
Query: 289 PRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGP 348
P A++IDS+QT+ + + + G + Q++E T+ L+ AK I V + GHVTK G IAGP
Sbjct: 168 PDAVVIDSVQTMQIPELQSATGSVAQIREVTADLMNIAKGQGITVFVVGHVTKGGAIAGP 227
Query: 349 RVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSE 408
++LEH+VD VLY EG+ SYR+LR+VKNRFGST+ELGVFEM GL+ V NPS+IFL E
Sbjct: 228 KILEHMVDTVLYFEGDLHHSYRILRTVKNRFGSTNELGVFEMRTDGLREVKNPSEIFLEE 287
Query: 409 QHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMK 466
+ D+ G A+ V M+G+R L+EIQAL + R G+ +R +I++VL K
Sbjct: 288 RLKDA---TGSAIVVSMEGTRPILVEIQALVTASVFGNAQRTATGLDRNRVSLIMAVLEK 344
Query: 467 QAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELR 526
+AGL LQ +L GV L E A DLA+A +I SS+ ++GE+GL GE+R
Sbjct: 345 RAGLMLQNQDAYLKAAGGVKLDEPAIDLAIAVSIASSYKNRGTSPTECYVGELGLTGEVR 404
Query: 527 MVSRMEKRVSTVAKLGYRKCIVP 549
V+R+E+RV+ KLG+++ +VP
Sbjct: 405 RVTRIEQRVAEAQKLGFKRVLVP 427
>gi|366053948|ref|ZP_09451670.1| DNA repair protein RadA [Lactobacillus suebicus KCTC 3549]
Length = 458
Score = 339 bits (870), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 182/443 (41%), Positives = 274/443 (61%), Gaps = 21/443 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTM--KRYSAGESDEGPVVQRTWLPQKPEEVQPV 170
+T +VCS+CGY+ ++ G C C T+ +R S+ V + E+ +P
Sbjct: 5 KTQYVCSNCGYSTPRFLGRCPNCGEWNTLVEERIQPTSSN---VTAANRVSLSGEKSKPT 61
Query: 171 RLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAI 230
++ E+ G + P + E+ RVLGGG+VPGSL+LIGGDPG+GKSTLLLQ++
Sbjct: 62 KIKEIKMG------QTPRTQTKIRELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVSGQ 115
Query: 231 IADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPR 290
+ V V+YVSGEES QI RADR+ ++ + ++Y TD+ I E ++ + P
Sbjct: 116 LNSVG-----GTVLYVSGEESATQIKMRADRLHVSGDAFYVYPETDMGAIRETIEEVKPD 170
Query: 291 ALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRV 350
++IDS+QT+ V + G + Q++E T+ L++ AK I + + GHVTK G IAGP++
Sbjct: 171 YVVIDSVQTMSEADVTSAIGSVAQIREVTAELMQIAKSNGITIFIVGHVTKGGAIAGPKI 230
Query: 351 LEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQH 410
LEH+VD VLY EG+ +YR+LRSVKNRFGST+ELG+FEM + GL ++NPS+IFL E+
Sbjct: 231 LEHMVDTVLYFEGDLHHTYRILRSVKNRFGSTNELGIFEMREEGLAEIANPSEIFLEERL 290
Query: 411 SDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQA 468
++ G A+ V M+G+R L+EIQAL R G+ +R ++++VL K+A
Sbjct: 291 KNA---TGSAIVVSMEGTRPILVEIQALITPTVFGNAQRTATGLNRNRVSLLMAVLEKRA 347
Query: 469 GLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMV 528
L LQ +L GV L E A DLA++ +I SS+ + AF+GE+GL GE+R V
Sbjct: 348 NLMLQNQDAYLKAAGGVKLDEPAIDLAISMSIASSYRDKGTQPTDAFVGEVGLTGEIRRV 407
Query: 529 SRMEKRVSTVAKLGYRKCIVPKS 551
+R+E+RV+ KLG+++ +PK+
Sbjct: 408 NRIEQRVAEAEKLGFKRIFIPKN 430
>gi|256820955|ref|YP_003142234.1| DNA repair protein RadA [Capnocytophaga ochracea DSM 7271]
gi|393779306|ref|ZP_10367551.1| DNA repair protein RadA [Capnocytophaga sp. oral taxon 412 str.
F0487]
gi|429754757|ref|ZP_19287449.1| DNA repair protein RadA [Capnocytophaga sp. oral taxon 324 str.
F0483]
gi|256582538|gb|ACU93673.1| DNA repair protein RadA [Capnocytophaga ochracea DSM 7271]
gi|392610580|gb|EIW93357.1| DNA repair protein RadA [Capnocytophaga sp. oral taxon 412 str.
F0487]
gi|429176518|gb|EKY17895.1| DNA repair protein RadA [Capnocytophaga sp. oral taxon 324 str.
F0483]
Length = 454
Score = 339 bits (870), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 180/440 (40%), Positives = 270/440 (61%), Gaps = 20/440 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T + C +CG +W G C C+ T+ + D P Q P K + + + +
Sbjct: 5 KTAYFCQNCGAQYSKWQGQCYVCKQWNTIVE-EVVQKDTAPAWQEKESPIKSKAPKYISI 63
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
+++ Q + R+ + +E+ VLGGG+VPGS+ L+GG+PG+GKSTLLLQ+A
Sbjct: 64 SQIDT---QQEARLNSNN---HELNNVLGGGIVPGSVTLLGGEPGIGKSTLLLQIA---- 113
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
L P +YVSGEES +QI RADR+ + F+ + T ++I ++++ L P +
Sbjct: 114 ----LNLPYRTLYVSGEESEKQIKMRADRIPHKLDNCFILTETKTQNIFQQIKELLPEIV 169
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQT+ + SAG + Q++EC S L++FAK T+ PV+L GH+TK G IAGP++LE
Sbjct: 170 IIDSIQTLQSDYIEASAGSISQIRECASELIKFAKTTHTPVILIGHITKDGQIAGPKILE 229
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VL EG++ YR+LRS+KNRFGST ELG++EM GL+ V+NPS+I +S+
Sbjct: 230 HMVDTVLQFEGDRNHVYRILRSLKNRFGSTSELGIYEMLSNGLREVNNPSEILISK---T 286
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
E ++G ++A ++G R +IEIQAL + T R G A R +M+++VL K+AG
Sbjct: 287 DETISGTSIAATLEGMRPLMIEIQALVSTAVYGTPQRSTTGFNAKRLNMLLAVLEKRAGF 346
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
+L +FLN+ G+ + + A DL VA AI SS + I + F GE+GLGGE+R V R
Sbjct: 347 RLGAKDVFLNITGGITIDDPATDLGVAMAILSSNEDIAIEKDVCFAGEVGLGGEIRPVQR 406
Query: 531 MEKRVSTVAKLGYRKCIVPK 550
+E+R++ KLG+ V K
Sbjct: 407 VEQRITEAEKLGFNTIFVSK 426
>gi|383112365|ref|ZP_09933162.1| DNA repair protein RadA [Bacteroides sp. D2]
gi|313696495|gb|EFS33330.1| DNA repair protein RadA [Bacteroides sp. D2]
Length = 455
Score = 339 bits (870), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 185/470 (39%), Positives = 284/470 (60%), Gaps = 22/470 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T +VCS+CG +W G C +C G Y + P +R + ++ +P+ L
Sbjct: 5 KTVYVCSNCGQDSPKWVGKCPSC---GEWNTYVEEIVRKEPTNRRPVSGIETQKPKPLAL 61
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
++ + P + +E+ RVLGGGLV GSLVLIGG+PG+GKSTL++Q +
Sbjct: 62 SDIEADDE------PRINMHDDELNRVLGGGLVQGSLVLIGGEPGIGKSTLVMQTVLHMP 115
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+ ++YVSGEES Q+ RADR+ + + + T +E I ++ +P +
Sbjct: 116 E-------KKILYVSGEESARQLKLRADRLSDTSSDCLIVCETSLEQIYVHIKNTNPDLV 168
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQT+ + S G + QV+EC++++LRFAK+T+ PVLL GH+ K G IAGP+VLE
Sbjct: 169 IIDSIQTISTESIESSPGSIAQVRECSASILRFAKETHTPVLLIGHINKEGSIAGPKVLE 228
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
HIVD VL EG++ YR+LRS+KNRFGST ELG++EM Q GL+ V+NPS++ LS+ H
Sbjct: 229 HIVDTVLQFEGDQHYMYRILRSIKNRFGSTAELGIYEMRQDGLRQVNNPSELLLSQDH-- 286
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
E ++G+A+A ++G R FLIE QAL S R G R +M+++VL K+ G
Sbjct: 287 -EGMSGVAIASAIEGIRPFLIETQALVSSAVYGNPQRSATGFDLRRMNMLLAVLEKRVGF 345
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
KL + +FLN+ G+ + + A DL V +AI SS ++ I + GEIGL GE+R V+R
Sbjct: 346 KLAQKDVFLNIAGGLKVNDPAIDLPVISAILSSNMDAAIEPEVCMAGEIGLSGEIRPVNR 405
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+E+R+ KLG+++ ++PK + + T ++E + + ++E +F
Sbjct: 406 IEQRIGEAEKLGFKRFLLPKYNLQGIDTQKL-KIELVPVRKVEEAFRALF 454
>gi|429738451|ref|ZP_19272259.1| DNA repair protein RadA [Prevotella saccharolytica F0055]
gi|429160174|gb|EKY02650.1| DNA repair protein RadA [Prevotella saccharolytica F0055]
Length = 459
Score = 339 bits (870), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 184/474 (38%), Positives = 285/474 (60%), Gaps = 24/474 (5%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGP-VVQRTWLPQ-KPEEVQP 169
++T +VCS+CGY +W G C +C T K G +Q P + QP
Sbjct: 4 DKTAFVCSNCGYDSAKWIGKCPSCGQWNTFKEIRVARETMGRGAIQSAVTPSLHVNKAQP 63
Query: 170 VRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAA 229
+ + + K ++D + E+ RVLGGGLV GS+VL+GG+PG+GKSTL+LQ
Sbjct: 64 ISSI-IAKDETRID-------MHDEELNRVLGGGLVQGSIVLLGGEPGIGKSTLILQTVL 115
Query: 230 IIADVHDLGEPSPVVYVSGEESVEQIGNRADRM-MIATEELFLYSSTDIEDIVEKVQPLS 288
I + ++YVSGEES Q+ RADR+ +E + S +E I+E+ +
Sbjct: 116 RIPE-------KKILYVSGEESTHQLKMRADRIENNVSENTIVLSENSLEKILEQTDLIR 168
Query: 289 PRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGP 348
P L+IDSIQT+ V S G ++QV+EC S LLRFAK ++IPV+L GH+ K G +AGP
Sbjct: 169 PDILVIDSIQTIQTDTVDSSPGSIVQVRECASTLLRFAKTSSIPVILIGHINKEGVLAGP 228
Query: 349 RVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSE 408
++LEHIVD VL EG++ YR+LRS+KNRFGST ELG++EM Q GL+ VSNPS++ L+
Sbjct: 229 KILEHIVDTVLQFEGDQHYIYRILRSIKNRFGSTSELGIYEMQQNGLRPVSNPSELLLTR 288
Query: 409 QHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMK 466
H++ L+G+A++ ++G R FL+E QAL + + T R G R +M+++VL K
Sbjct: 289 DHAE---LSGIAISCTIEGVRPFLVETQALVSTAAYGTPQRSTTGFDQRRLNMLLAVLEK 345
Query: 467 QAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELR 526
+ G KL + +F+N+ G +T+ DL++ +A+ SS ++ PI GE+GL GE+R
Sbjct: 346 RVGFKLIQKDVFVNIAGGFRVTDLGMDLSIISAVLSSNVDTPIEKEWCMTGEVGLSGEVR 405
Query: 527 MVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
V+R+E+R+ KLG+ I+P++ ++ F +++ + ++E + +F
Sbjct: 406 PVNRIEQRIGEAEKLGFTHMIIPQNNLSNIDMSRF-KIQLHPVRKVEEALRTLF 458
>gi|417089430|ref|ZP_11955529.1| DNA repair protein [Streptococcus suis R61]
gi|353534094|gb|EHC03729.1| DNA repair protein [Streptococcus suis R61]
Length = 455
Score = 339 bits (870), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 189/470 (40%), Positives = 277/470 (58%), Gaps = 24/470 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T +VC C Y ++ G C C S + + V T +P ++ V
Sbjct: 7 KTTFVCQSCEYHSPKYLGRCPNCGSWSSFVEEVEVAEVKNERVSLTGEKTRPMKLNEVSS 66
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
++V + ++ E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ ++
Sbjct: 67 IQVARTKTNME-----------EFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLS 115
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+ V+YVSGEES +QI RA+R+ E +LY+ T+++ I +++ + P L
Sbjct: 116 TI------GTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSIRTEIEKIKPDFL 169
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQT+ ++ G + QV+E T+ L++ AK NI + GH+TK G +AGPR LE
Sbjct: 170 IIDSIQTIMSPDISSVQGSVSQVREVTNELMQIAKTNNIATFIVGHMTKEGTLAGPRTLE 229
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS++FL E+
Sbjct: 230 HMVDTVLYFEGERQHTFRILRAVKNRFGSTNEIGIFEMQSQGLVEVLNPSEVFLEERLDG 289
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
+ G A+ V M+G+R L E+QAL R G+ +RA +I++VL K+AGL
Sbjct: 290 A---TGSAIVVTMEGTRPILAEVQALVTPTMFGNAKRTTTGLDFNRASLIMAVLEKRAGL 346
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ +L GV L E A DLAVA A+ SS+ + P FIGEIGL GE+R V+R
Sbjct: 347 LLQNQDAYLKSAGGVKLDEPAIDLAVAVALASSYKDKPTNPQECFIGEIGLTGEIRRVNR 406
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+E+R++ AKLG+ K PK++ + +++ +G + EV+ VF
Sbjct: 407 IEQRINEAAKLGFTKVYAPKNSLTGIKVP--KEITVVGVTTIGEVLQKVF 454
>gi|160889950|ref|ZP_02070953.1| hypothetical protein BACUNI_02384 [Bacteroides uniformis ATCC 8492]
gi|156860338|gb|EDO53769.1| DNA repair protein RadA [Bacteroides uniformis ATCC 8492]
Length = 496
Score = 339 bits (870), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 193/470 (41%), Positives = 282/470 (60%), Gaps = 22/470 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T +VCS+CG +W G C +C G Y + V +R + + +PV L
Sbjct: 46 KTVYVCSNCGQDSPKWVGKCPSC---GMWNTYVEEVVRKEVVNKRPVSGIETAKAKPVTL 102
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
E+ + P L E+ RVLGGGLV GSLVLIGG+PG+GKSTL+LQ I
Sbjct: 103 HEIVADDE------PRIDLHDAELNRVLGGGLVQGSLVLIGGEPGIGKSTLVLQTVLRIP 156
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+ ++YVSGEES Q+ RADR+ A+ + + T +E I ++ + P +
Sbjct: 157 E-------KRILYVSGEESTRQLKLRADRLTSASSDCLIVCETSLEQIYVHIKNIRPDIV 209
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQT+ + S G + QV+EC++++LRFAK+T+ V+L GH+ K G IAGP+VLE
Sbjct: 210 IIDSIQTISTETLESSPGSIAQVRECSASILRFAKETHTAVILIGHINKEGSIAGPKVLE 269
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
HIVD VL EG++ YR+LRS+KNRFGST ELG++EM Q GL+ VSNPS++ LS+ H
Sbjct: 270 HIVDTVLQFEGDQHYMYRILRSIKNRFGSTAELGIYEMRQDGLRQVSNPSELLLSQDH-- 327
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
E ++G+A+A ++G R F IE QAL S R G R +M+++VL K+ G
Sbjct: 328 -EGMSGIAIASAIEGIRPFPIETQALVSSAVYGNPQRSATGFDIRRMNMLLAVLEKRVGF 386
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
KL + +FLN+ G+ + + A DLAV +AI SS ++ I + GEIGL GE+R V+R
Sbjct: 387 KLAQKDVFLNIAGGLKVNDPAIDLAVISAILSSNMDTAIEPEVCMAGEIGLSGEIRPVNR 446
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+E+R+ KLG+++ I+PK + L T ++E I + ++E +F
Sbjct: 447 IEQRIGEAEKLGFKRFILPKYNMQGLNTQKI-KIELIPVRKVEEAFRALF 495
>gi|309806519|ref|ZP_07700523.1| DNA repair protein RadA [Lactobacillus iners LactinV 03V1-b]
gi|312871559|ref|ZP_07731652.1| DNA repair protein RadA [Lactobacillus iners LEAF 3008A-a]
gi|312872605|ref|ZP_07732673.1| DNA repair protein RadA [Lactobacillus iners LEAF 2062A-h1]
gi|308167118|gb|EFO69293.1| DNA repair protein RadA [Lactobacillus iners LactinV 03V1-b]
gi|311091967|gb|EFQ50343.1| DNA repair protein RadA [Lactobacillus iners LEAF 2062A-h1]
gi|311092954|gb|EFQ51305.1| DNA repair protein RadA [Lactobacillus iners LEAF 3008A-a]
Length = 459
Score = 339 bits (870), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 191/471 (40%), Positives = 275/471 (58%), Gaps = 18/471 (3%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T + C +C Y + G C C + +++ + + + L +P +L
Sbjct: 5 KTQYRCKNCDYVSASYLGRCPNCGAWNQLEKETEVAKTTSNRLTASRLITAIGNNEPKKL 64
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
E++ KQ+ P S E+ RVLGGG+VPGSLVL+GGDPG+GKSTL+LQ+ IA
Sbjct: 65 SEIDIK-KQIRITTPFS-----ELNRVLGGGIVPGSLVLVGGDPGIGKSTLMLQIMGSIA 118
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+ H V+YVSGEES QI RA+R+ I+ EL LYS T++E+I E++ L P L
Sbjct: 119 NSHK------VLYVSGEESASQIKMRAERLHISDTELLLYSETNMENIREQIVDLKPEFL 172
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
+IDSIQT+ G QV+E T+ LL+ AK I V + GHVTK G IAGP++LE
Sbjct: 173 VIDSIQTMNEPSQDSMVGSATQVREVTAELLKIAKIDKITVFVIGHVTKEGAIAGPKILE 232
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EG+K SYR+LRSVKNRFG+T+E+G+FEM + GL V+NPS +FL E+ +
Sbjct: 233 HMVDTVLYFEGDKHHSYRILRSVKNRFGATNEIGMFEMKEEGLSEVTNPSAVFLDERLPN 292
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMKQAGL 470
S G A+ V ++G+R L +IQAL + R +G+ +R ++++VL K+ L
Sbjct: 293 S---TGSAIVVSLEGTRPILADIQALVTPTAFGYAKRTTSGLDYNRVALLLAVLEKRGNL 349
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ FL G+ L E A DLA+ A+ SS+ I F+GE+GL GE+R ++
Sbjct: 350 MLQNQDAFLTATGGIKLNEPAIDLAICMAVASSYKNKEIAVTDCFVGEVGLTGEIRRINN 409
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVFT 581
+E RV A G+++ VPK S +E +G +L E + + FT
Sbjct: 410 IEARVKEAATRGFKRIFVPK-YNVSAKLQSHTTIEIVGVISLMEALKIEFT 459
>gi|429748940|ref|ZP_19282097.1| DNA repair protein RadA [Capnocytophaga sp. oral taxon 332 str.
F0381]
gi|429169490|gb|EKY11240.1| DNA repair protein RadA [Capnocytophaga sp. oral taxon 332 str.
F0381]
Length = 455
Score = 339 bits (870), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 181/440 (41%), Positives = 271/440 (61%), Gaps = 19/440 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T + C +CG G+W G C C+ T+ + +E P+ Q + +
Sbjct: 5 KTAYFCQNCGAQYGKWQGQCHICKQWNTIVE-EVVQKEEKPIWQERETTTSRNKAP--KY 61
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
+ V++ Q + R+ + +E+ VLGGG+VPGS+ L+GG+PG+GKSTLLLQ+A
Sbjct: 62 IAVSQISTQQEERLNSNN---HELNNVLGGGIVPGSVTLLGGEPGIGKSTLLLQIA---- 114
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
L P +YVSGEES +QI RADR+ + ++ + T ++I ++++ L P +
Sbjct: 115 ----LNLPYRTLYVSGEESEKQIKMRADRIPHRLDNCYILTETKTQNIFQQIKELLPEIV 170
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQT+ + SAG + Q++ECTS L++FAK T+ PV+L GH+TK G IAGP++LE
Sbjct: 171 IIDSIQTLQSDYIEASAGSISQIRECTSELIKFAKTTHTPVILIGHITKDGQIAGPKILE 230
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VL EG++ YR+LRS+KNRFGST ELG++EM GL+ V+NPS+I +S+
Sbjct: 231 HMVDTVLQFEGDRNHVYRILRSLKNRFGSTSELGIYEMLSNGLREVNNPSEILISK---T 287
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
E ++G ++A ++G R +IEIQAL + T R G A R +M+++VL K+AG
Sbjct: 288 DETISGTSIAATLEGMRPLMIEIQALVSTAVYGTPQRSTTGFNAKRLNMLLAVLEKRAGF 347
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
+L +FLN+ G+ + + A DL VA AI SS + I I F GE+GLGGE+R V R
Sbjct: 348 RLGAKDVFLNITGGITIDDPATDLGVAMAILSSNEDIAIDKDICFAGEVGLGGEIRPVQR 407
Query: 531 MEKRVSTVAKLGYRKCIVPK 550
+E+R++ KLG+ V K
Sbjct: 408 VEQRITEAEKLGFNTIFVSK 427
>gi|148241350|ref|YP_001226507.1| DNA repair protein RadA [Synechococcus sp. RCC307]
gi|147849660|emb|CAK27154.1| DNA repair protein RadA [Synechococcus sp. RCC307]
Length = 463
Score = 339 bits (869), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 195/460 (42%), Positives = 280/460 (60%), Gaps = 23/460 (5%)
Query: 114 TNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRLL 173
T +VC +CG Q++G C +C S ++ ++G +G +R + E P R
Sbjct: 6 TTYVCQNCGAQSRQFFGRCSSCGSWNSLVEQTSGPPPDG---RRRRQSAEAAEPAPRR-- 60
Query: 174 EVNKGMKQLDWR-IPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
++ M + R + G E+ RVLGGGLVPGSLVL+GGDPG+GKSTLLLQ AA
Sbjct: 61 --SEAMAAVGERAVQRLGTGFAELDRVLGGGLVPGSLVLVGGDPGIGKSTLLLQTAA--- 115
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEE---LFLYSSTDIEDIVEKVQPLSP 289
DL + V+YVS EES +Q+ R R+ A + L + TD+E ++++++ L P
Sbjct: 116 ---DLAQRQSVLYVSAEESAQQVKLRWQRLAAAGSDGDGPQLLAETDLEHVLQELEALRP 172
Query: 290 RALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPR 349
+IDSIQ ++ ++ + G + QV+EC ++L R AKK +I +LL GHVTK G +AGP+
Sbjct: 173 DVAVIDSIQALHDADLSSAPGSVAQVRECAASLQRLAKKLDIALLLVGHVTKEGMLAGPK 232
Query: 350 VLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQ 409
VLEH+VDAVL EG++F+S+RLLR+VKNRFG+T ELGVFEM GL VSNPS++FL
Sbjct: 233 VLEHLVDAVLTFEGDRFASHRLLRAVKNRFGATHELGVFEMRDRGLLEVSNPSELFL--- 289
Query: 410 HSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVS--RHVNGIQASRADMIISVLMKQ 467
E G+A V +G+R ++E+QAL + S S R GI +R I++VL K
Sbjct: 290 -GSPEGSVGMATIVACEGTRPLVVELQALVSTTSYASPRRMATGIGTNRLHQILAVLEKH 348
Query: 468 AGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRM 527
GL L +L V G+ + E A DL VAAA+ +SF + +P G +GE+GLGG+LR
Sbjct: 349 LGLPLSRFDCYLAVAGGLEVEEPAADLGVAAAVVASFRDLALPAGTVLVGELGLGGQLRP 408
Query: 528 VSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFI 567
V ++E R+ A+LG+R+ +VPK + S L E+ I
Sbjct: 409 VGQLELRLQEAARLGFRRAVVPKGSGVSCPELAIEEASGI 448
>gi|374855434|dbj|BAL58291.1| DNA repair protein RadA [uncultured Chloroflexi bacterium]
Length = 470
Score = 339 bits (869), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 207/481 (43%), Positives = 291/481 (60%), Gaps = 38/481 (7%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQ--- 168
+ T +VC CG + G C C + +M +VQ P+ + V+
Sbjct: 3 SHTRYVCQQCGRVTASYMGRCPQCGAYNSMVEE---------IVQEESSPRNTQAVRGWG 53
Query: 169 ----PVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLL 224
P L E++ +++ +P+S E ARVLGGG+VPGS+VLIGGDPG+GKSTL+
Sbjct: 54 TRSVPRPLNEISGEIEE-RLALPIS-----EFARVLGGGIVPGSIVLIGGDPGIGKSTLM 107
Query: 225 LQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMM---IATEELFLYSSTDIEDIV 281
LQMA ++ V+Y+SGEES +QI RA R+ ELFL + T++ I+
Sbjct: 108 LQMA------MEMARQRRVLYISGEESEKQIKMRAVRLQGEKPLPAELFLVTETNLGTIL 161
Query: 282 EKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTK 341
+Q + P +I+DSIQTVYL + SAG + QV+EC S L AK + I V L GHVTK
Sbjct: 162 NHIQEIRPSLVIVDSIQTVYLPELEPSAGSVTQVRECASQLRELAKSSGISVFLIGHVTK 221
Query: 342 SGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNP 401
G IAGPRVLEHIVD VLY+EG++F +YRLLRSVKNRFG+T E+GVFEM + GL+ V NP
Sbjct: 222 EGTIAGPRVLEHIVDTVLYLEGDRFQAYRLLRSVKNRFGATSEVGVFEMHEDGLKEVPNP 281
Query: 402 SKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADM 459
S+ FL+E+ ++ G A+AV M+G+R L+EIQ L R NG+ +R +
Sbjct: 282 SEAFLAERLVNA---PGSAIAVTMEGTRPLLVEIQGLTSPAQFGNARRTPNGVDFNRLLL 338
Query: 460 IISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEI 519
I++VL ++ G +L E IF+NVV G+ + E A DLA+AAAI SS P+ IGE+
Sbjct: 339 IVAVLTRRLGFRLAEADIFVNVVGGLQIDEPAADLAIAAAIASSERNTPVRADAVLIGEV 398
Query: 520 GLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVV 579
GLGGELRM +M R+ AKLG++ IVP++ +S G ++E + ++L + + +
Sbjct: 399 GLGGELRMPGQMPARLREAAKLGFKTAIVPRALRRSEPWPG--EIEILEARSLAQALELA 456
Query: 580 F 580
F
Sbjct: 457 F 457
>gi|406981256|gb|EKE02756.1| hypothetical protein ACD_20C00337G0027 [uncultured bacterium]
Length = 461
Score = 339 bits (869), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 188/470 (40%), Positives = 282/470 (60%), Gaps = 29/470 (6%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESD-EGPVVQRTWLPQKPEEVQPVR 171
++ W+C +C Y + G C C GT+ + D + P++ P+ ++ V
Sbjct: 5 KSKWICQNCAYEASGYLGKCPDCGEWGTLTEEKIQKFDNKKPLLLNNLTQSTPQLLKHVT 64
Query: 172 L---LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMA 228
L + + GM++ D RVLGGGLV GSLVLIGGDPG+GKSTL+LQ
Sbjct: 65 LDDTIRFSTGMEEYD--------------RVLGGGLVRGSLVLIGGDPGIGKSTLVLQSC 110
Query: 229 AIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLS 288
+A+ DL V+Y S EES QI RA+R+ + +++L++Y+ T +E+I K+ L+
Sbjct: 111 NTLAN-RDL----KVLYASAEESARQIKLRANRLNVDSDKLYIYAETSLEEIQAKINDLN 165
Query: 289 PRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGP 348
P +I+DSIQ +Y + + S G + QV+EC + L+ AK T +++ GHVTK G IAGP
Sbjct: 166 PDIVIVDSIQAIYSQSITSSPGSVSQVRECCNTLMTIAKTTGTTIIIVGHVTKDGMIAGP 225
Query: 349 RVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSE 408
+VLEH+VD VLY EGE++ SYR+LR++KNRFGST+++GVF M GL V+NPS++FL+E
Sbjct: 226 KVLEHMVDTVLYFEGERYKSYRMLRTIKNRFGSTNDVGVFNMEDNGLIEVTNPSELFLAE 285
Query: 409 QHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVLMK 466
+ G V +G+R L+EIQAL S S+ R GI+ +R I++VL +
Sbjct: 286 RC--KTITPGSVVIATSEGTRPLLVEIQALVGPTSYSSPRRVATGIEYNRVLQILAVLER 343
Query: 467 QAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELR 526
+ GL L ++ +++NVV G+ + E A DL VA A+ + + IGEIGL GE+R
Sbjct: 344 RVGLNLSKHDVYINVVGGIDIQEPAADLGVALAVATCARNVIVDPETVIIGEIGLSGEIR 403
Query: 527 MVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVI 576
V +++ R++ AKLG++K IVPKS+ + ++E IG L E I
Sbjct: 404 SVRQLDMRINEAAKLGFKKAIVPKSSLPLKNS--NNKIEIIGVSRLIEAI 451
>gi|282881629|ref|ZP_06290292.1| DNA repair protein RadA [Prevotella timonensis CRIS 5C-B1]
gi|281304388|gb|EFA96485.1| DNA repair protein RadA [Prevotella timonensis CRIS 5C-B1]
Length = 462
Score = 339 bits (869), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 188/474 (39%), Positives = 283/474 (59%), Gaps = 21/474 (4%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVR 171
++ +VCS CG +W G C C T K S + + + E + +
Sbjct: 4 DKIAYVCSQCGQESSKWIGKCPNCGEWNTFKEIRISNSSQPSSIAVSTAHNLHGEQKKNK 63
Query: 172 LLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAII 231
L + Q + RI ++ +E+ RVLGGGLVPGS+VL+GG+PG+GKSTL LQ +
Sbjct: 64 PLHLQDISAQDEPRINMND---DELNRVLGGGLVPGSIVLLGGEPGIGKSTLTLQTILHL 120
Query: 232 ADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEE---LFLYSSTDIEDIVEKVQPLS 288
+ V+YVSGEES Q+ RADR I TE+ + + T +E I +V +
Sbjct: 121 PN-------KKVLYVSGEESAHQLKMRADR--ITTEQNNNVEILCETSLEHIFNQVLEVK 171
Query: 289 PRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGP 348
P LIIDSIQT+ V S G + QV+EC + LLR AK + IP+LL GH+ K G +AGP
Sbjct: 172 PDLLIIDSIQTIATNHVDSSPGSIAQVRECAALLLRLAKTSGIPILLIGHINKEGTLAGP 231
Query: 349 RVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSE 408
++LEH+VD V+ EG++ YR+LRS+KNRFGST ELG++EM Q GL+ VSNPS++ L++
Sbjct: 232 KILEHMVDTVIQFEGDQHYMYRILRSIKNRFGSTSELGIYEMQQNGLRPVSNPSELLLTQ 291
Query: 409 QHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMK 466
H + L+G+A++ ++G R FL+E QAL S + T R G R +M+++VL K
Sbjct: 292 DH---DGLSGIAISSAIEGVRPFLVETQALVSSAAYGTPQRSATGFDQRRLNMLLAVLEK 348
Query: 467 QAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELR 526
+ G KL + +FLN+ G+ +T+ A DL+V AA+ SS ++ I NG GE+GL GE+R
Sbjct: 349 RVGFKLMQKDVFLNIAGGLRVTDLAMDLSVIAAVLSSNVDTAIENGWCMAGEVGLSGEVR 408
Query: 527 MVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
++R+E+R++ KLG++ I+PK K + + +E + ++E + +F
Sbjct: 409 PINRIEQRIAEAEKLGFKHMILPKYNLKGINPQKY-HLELHPVRKVEEALRALF 461
>gi|291513731|emb|CBK62941.1| DNA replication and repair protein RadA [Alistipes shahii WAL 8301]
Length = 455
Score = 339 bits (869), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 194/442 (43%), Positives = 269/442 (60%), Gaps = 29/442 (6%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTM-KRYSAGESDEGPVVQRTWLPQ-KPEEVQPV 170
+ + C +CG+ +W G C +C T + A ES P V LP KP+ V+ +
Sbjct: 5 KKAFFCKNCGFEAPKWLGRCPSCGEWNTFAEEIIARESGSVPAVAAGPLPAAKPQRVRDI 64
Query: 171 RLLEVNKGMKQLDWRIPLSGLFGN-EVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAA 229
R E +LD GN EV RVLGGG+VPGSLVL+GG+PG+GKSTL LQ+A
Sbjct: 65 RESE----HVRLD--------LGNAEVNRVLGGGMVPGSLVLVGGEPGIGKSTLSLQIAL 112
Query: 230 IIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSP 289
+ L YVSGEES EQI RA R+ I +E +Y T +E+IV ++ P
Sbjct: 113 AANGLKTL-------YVSGEESAEQIKMRAARIGIGNDECLIYPETLLENIVAQIAEHRP 165
Query: 290 RALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPR 349
++IDSIQT+Y + SAG + Q++EC + LL++AK T + + GH+TK G IAGP+
Sbjct: 166 DLVVIDSIQTIYTDLLDSSAGSVSQIRECAATLLKYAKSTGTSIFIIGHITKDGSIAGPK 225
Query: 350 VLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQ 409
+LEHIVD VL EG+ + YR+LR +KNRFG+T E+GVFEM GL+ V NPS+I L+
Sbjct: 226 ILEHIVDVVLQFEGDSNNIYRILRGIKNRFGATFEIGVFEMLDAGLRGVDNPSEILLTHY 285
Query: 410 HSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS---TVSRHVNGIQASRADMIISVLMK 466
E L+G+AV DG R +LIE+QAL VSG+ T R G A R +M+++VL K
Sbjct: 286 E---EPLSGIAVGASADGVRPYLIEVQAL-VSGAAYGTPQRSTTGYDARRMNMLLAVLEK 341
Query: 467 QAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELR 526
+ G+K+ + +FLN G + + DLAV AA+ SS+ + P+ G+ GEIGL GE+R
Sbjct: 342 RVGMKMFQKDVFLNFAGGFKVADPGLDLAVVAAVISSYYDRPVAEGVCCAGEIGLSGEVR 401
Query: 527 MVSRMEKRVSTVAKLGYRKCIV 548
R E+R+S A+LG+R+ IV
Sbjct: 402 PAPRTEQRISEAARLGFRRIIV 423
>gi|372220836|ref|ZP_09499257.1| DNA repair protein RadA [Mesoflavibacter zeaxanthinifaciens S86]
Length = 453
Score = 339 bits (869), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 187/452 (41%), Positives = 278/452 (61%), Gaps = 21/452 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T + C +CG +W G C +C+ T+ A + + Q ++ +P+R+
Sbjct: 5 KTAYFCQNCGAQFAKWVGQCSSCKQWNTVVEEVAQKETKSSWKQTDTSVKRT--AKPLRI 62
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
E++ D + L+ G E RVLGGGLVPGSL L+GG+PG+GKSTLLLQMA +
Sbjct: 63 SEISN-----DKEVRLNTKDG-EFNRVLGGGLVPGSLTLLGGEPGIGKSTLLLQMALKL- 115
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
DL V+YVSGEES +QI RA+R+ T+ ++ + T + I ++V ++P +
Sbjct: 116 ---DL----KVLYVSGEESQKQIKMRAERIEKNTDNCYILTETKTQHIFKQVAAVTPELV 168
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQT++ + +AG + Q++ECT+ L++FAK++N VLL GH+TK G+IAGP++LE
Sbjct: 169 IIDSIQTLHTDYIESAAGSISQIRECTAELIKFAKESNTSVLLVGHITKDGNIAGPKILE 228
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VL EG++ YR+LRS+KNRFGST ELG++EM GL+ V+NPS++ +S +
Sbjct: 229 HMVDTVLQFEGDRNYVYRILRSLKNRFGSTAELGIYEMFGNGLREVTNPSEVLISNAAGE 288
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
L+G A++ ++G R LIEIQAL S T R G R +M+++VL K+AG
Sbjct: 289 ---LSGTAISATVEGMRPLLIEIQALVSSAVYGTPQRSATGFNVKRLNMLLAVLEKRAGF 345
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
KL +FLN+ G+++ + A DLAV AAI SS + PI G F E+GL GE+R V R
Sbjct: 346 KLAAKDVFLNITGGISVDDPAIDLAVIAAILSSNADIPIEKGTCFAAEVGLAGEIRPVQR 405
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFE 562
+++R+ KLG+ V K+ + L E
Sbjct: 406 VDQRILEAEKLGFSTIYVSKANKIGLKHTNLE 437
>gi|187934989|ref|YP_001884448.1| DNA repair protein RadA [Clostridium botulinum B str. Eklund 17B]
gi|187723142|gb|ACD24363.1| DNA repair protein RadA [Clostridium botulinum B str. Eklund 17B]
Length = 455
Score = 339 bits (869), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 194/473 (41%), Positives = 281/473 (59%), Gaps = 27/473 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
++ ++C CGY +W G C +C + T ++ D+ V+ + QP +
Sbjct: 5 KSTYICQQCGYEAPKWLGKCPSCNNWNT---FNEEIKDDSKVITSLKANNIVQNNQPKNI 61
Query: 173 LEVNKGMKQ-LDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAII 231
++ G K+ D I E+ RVLGGGLV GSL LI GDPG+GKSTLLLQ A I
Sbjct: 62 RDIKSGEKERYDTGIK-------ELNRVLGGGLVRGSLTLISGDPGIGKSTLLLQTANNI 114
Query: 232 ADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRA 291
A + V+YVSGEES EQI R DR+ + +E LF+ S T+++ I ++ ++P
Sbjct: 115 AVKY-----GKVLYVSGEESEEQIKIRGDRLGVNSENLFIISETNLDAISIYIEQINPNF 169
Query: 292 LIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVL 351
+IIDSIQTV+ V+ + G + QVKEC++ ++R K NIP L HVTK G++AGPRVL
Sbjct: 170 VIIDSIQTVFKESVSSAPGSVSQVKECSNTIMRMCKGKNIPFFLVAHVTKQGELAGPRVL 229
Query: 352 EHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHS 411
EH+VD VLY EGE+ YR+LR++KNRFG+T E+GVFEM Q GL V +PSKIFL + +
Sbjct: 230 EHMVDTVLYFEGERTEEYRILRTMKNRFGTTSEIGVFEMQQEGLVEVFDPSKIFLEDTSA 289
Query: 412 DSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVLMKQAG 469
+ E G V IM+G+R LIEIQAL R GI R +I++VL K+
Sbjct: 290 NQE---GSVVVGIMEGTRPILIEIQALVSETKAPMPRRTAVGIDNQRLSLILAVLEKKLK 346
Query: 470 LKLQENAIFLNVVSGVALTETAGDLAVAAAICSSF--LEFPIPNGIAFIGEIGLGGELRM 527
+ +++NVV G+ + T+ DL +A A+ SS EF + + +GE+GL GE+R
Sbjct: 347 MFFYNKDVYVNVVGGLNIDGTSADLGLALALISSAKSKEFKLDKTL-MVGEVGLTGEIRP 405
Query: 528 VSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+S E+ V KLG++ I+P E++L + + ++ IG ++L E IN +F
Sbjct: 406 ISSAERLVKEAEKLGFKNVIIP---ERNLDKIKTDNIKVIGIRHLMEAINKIF 455
>gi|228473661|ref|ZP_04058411.1| DNA repair protein RadA [Capnocytophaga gingivalis ATCC 33624]
gi|228274875|gb|EEK13690.1| DNA repair protein RadA [Capnocytophaga gingivalis ATCC 33624]
Length = 457
Score = 339 bits (869), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 189/478 (39%), Positives = 285/478 (59%), Gaps = 36/478 (7%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTM--------KRYSAGESDEGPVVQRTWLPQKP 164
+T + C +CG +W G C AC+ T+ +++ + DE T +K
Sbjct: 5 KTAFFCQNCGAQYSKWQGQCYACKEWNTIVEEVIQKEEKHQWKKDDESD----TPRSKKT 60
Query: 165 EEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLL 224
+ P+ + K M+ LD SG E+ VLGGG+VPGS+VLIGG+PG+GKSTLL
Sbjct: 61 NKYIPLHEITTEKEMR-LD-----SG--DQELNNVLGGGIVPGSVVLIGGEPGIGKSTLL 112
Query: 225 LQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKV 284
LQ+A + P +YVSGEES +QI R +R+ A ++ + T ++I +++
Sbjct: 113 LQIA--------MRMPYKTLYVSGEESQKQIKMRGERITNARNNCYILTETKTQNIFQQI 164
Query: 285 QPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGD 344
+ L P LIIDSIQT++ + SAG + Q++ECT+ L+++AK T +PV++ GH+TK G
Sbjct: 165 KELDPEILIIDSIQTLHSDYIEASAGSISQIRECTAELIKYAKLTGVPVIIVGHITKDGT 224
Query: 345 IAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKI 404
IAGP++LEH+VD VL EG++ +R+LR++KNRFGST ELG++EM GL+ VSNPS++
Sbjct: 225 IAGPKILEHMVDTVLQFEGDRNHVFRILRALKNRFGSTSELGIYEMLSTGLREVSNPSEV 284
Query: 405 FLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIIS 462
LS+ +S +G A+ ++G R +IEIQAL S T R G A R +M+++
Sbjct: 285 LLSKTDENS---SGTAIVATIEGMRPLMIEIQALVSSAVYGTPQRSTTGFNAKRLNMLLA 341
Query: 463 VLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLG 522
VL K+AG +L +FLN+ G+++ + + DL VA AI SS + IP F E+GLG
Sbjct: 342 VLEKRAGFRLGSKDVFLNITGGISVDDPSTDLGVAMAILSSNEDVAIPKTFCFAAEVGLG 401
Query: 523 GELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
GE+R V R+E+R+S KLG+ + K + T G + I ++EVI +F
Sbjct: 402 GEIRPVQRVEQRISEAEKLGFDTIFISKYCK---LTAGKSNINVITYAKVEEVIAHLF 456
>gi|428777673|ref|YP_007169460.1| DNA repair protein RadA [Halothece sp. PCC 7418]
gi|428691952|gb|AFZ45246.1| DNA repair protein RadA [Halothece sp. PCC 7418]
Length = 499
Score = 339 bits (869), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 201/483 (41%), Positives = 286/483 (59%), Gaps = 57/483 (11%)
Query: 117 VCSDCGYTDGQWWGMCRACESVGTMKR----------YSAGESDEGPVVQRTWLPQKPEE 166
VCS CG QW+G C C GT++ S +S++ P P KP
Sbjct: 9 VCSVCGTEHNQWFGKCSGCGEFGTLEEEQVTSVGGNSRSGWQSNKYPTSVNKNKPPKP-- 66
Query: 167 VQPVRL-LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLL 225
R+ L+ ++ R P SG E+ RVLGGG+VPGSLVLIGGDPG+GKSTLLL
Sbjct: 67 ----RISLKFSQIQDDEQPRFP-SGYV--ELDRVLGGGIVPGSLVLIGGDPGIGKSTLLL 119
Query: 226 QMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIA-----TEE------------ 268
Q+A A +YVS EES +Q+ RA R+ + TEE
Sbjct: 120 QVANQTAHTQR------TLYVSAEESGQQVKLRASRLGVGLTDMPTEEKNAAADSNGHTP 173
Query: 269 -------LFLYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSA 321
L++ + TD+E+I+ +++ L P IIDSIQT+Y ++ + G + QV+ECTSA
Sbjct: 174 KSLSHDNLYVLAETDLEEILREIESLKPMLAIIDSIQTLYFASLSSAPGSVAQVRECTSA 233
Query: 322 LLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGS 381
L++ AK+ N+ +L+ GHVTK G IAGPRVLEH+VD VLY EG++++S+RLLRSVKNRFG+
Sbjct: 234 LMQVAKRENVTLLIVGHVTKEGAIAGPRVLEHLVDTVLYFEGDRYASHRLLRSVKNRFGA 293
Query: 382 TDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVS 441
T E+GVFEM GL+ V NPS++FL + E + G A+ V +G+R ++E+QAL
Sbjct: 294 THEIGVFEMIDHGLREVENPSELFLGNR---DESVPGTAIVVACEGTRPIVVELQALVSP 350
Query: 442 GSTVS--RHVNGIQASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAA 499
S S R G+ +R I++VL K+ G+ L + ++ G+ + E A DL VA A
Sbjct: 351 TSYTSPRRATTGVDYNRLQQILAVLEKRVGVPLSKLDAYVATAGGLGVEEPAADLGVAVA 410
Query: 500 ICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATL 559
+ +SF + + A IGE+GLGG++R+VS++E R+ AKLG+++ IVPK +SL L
Sbjct: 411 VVASFRDRVVDPRTALIGEVGLGGQVRLVSQLELRIKEAAKLGFQRAIVPKG--QSLPDL 468
Query: 560 GFE 562
G E
Sbjct: 469 GIE 471
>gi|289423036|ref|ZP_06424854.1| DNA repair protein RadA [Peptostreptococcus anaerobius 653-L]
gi|289156547|gb|EFD05194.1| DNA repair protein RadA [Peptostreptococcus anaerobius 653-L]
Length = 463
Score = 339 bits (869), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 175/443 (39%), Positives = 274/443 (61%), Gaps = 20/443 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGT-MKRYSAGES-DEGPVVQRTWLPQKPEEVQPV 170
RT +VC +CGY + +W G C C T ++ E+ E + +R + +PV
Sbjct: 5 RTKYVCQNCGYENPKWLGKCPECLQWNTFVEETEVKETPKEKAIKERALRASIKTDTKPV 64
Query: 171 RLLEVNKGMKQ-LDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAA 229
++ + ++ IP E+ RVLGGG++P SL+L+GGDPG+GKSTLLLQ++
Sbjct: 65 KINSIQSHREERFSTMIP-------ELDRVLGGGIIPASLILVGGDPGIGKSTLLLQVSN 117
Query: 230 IIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSP 289
IA ++YVSGEES QI RA R+ + ++ L++Y+ ++ I ++ + P
Sbjct: 118 NIAR-----SGKKLLYVSGEESENQIKMRAKRLGVDSDNLYIYTENNLAAIESQIDDIKP 172
Query: 290 RALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPR 349
A+++DSIQT+ + + G + Q+KE TS + +K I + GHVTK G +AGP+
Sbjct: 173 DAIVVDSIQTMISPEINAAPGTVSQIKEGTSKFMNISKSKGISTFIVGHVTKEGSLAGPK 232
Query: 350 VLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQ 409
+LEH+VD VLY EGE++++YRLLR+VKNRFGST+ELGVFEM GL+ + NPSK+ +SE+
Sbjct: 233 LLEHMVDTVLYFEGERYNTYRLLRAVKNRFGSTNELGVFEMKANGLEELENPSKVLISEK 292
Query: 410 HSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMKQ 467
SD+ +G + ++G+RS L+E+QAL + + R G+ +R +I++VL K
Sbjct: 293 PSDA---SGSVIVSTVEGTRSMLLELQALVATTNFGYPRRTTTGVDNNRVALILAVLEKV 349
Query: 468 AGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRM 527
GL++Q +F+N++ G+ + + + DL +A A+ SSF PI + GEIGL GE+R
Sbjct: 350 VGLQIQNQDVFVNIIGGLKINDPSMDLGIALAVASSFKNIPIDASVVVTGEIGLTGEVRT 409
Query: 528 VSRMEKRVSTVAKLGYRKCIVPK 550
VS +EKR+ KLG++K I+P+
Sbjct: 410 VSFIEKRIIECEKLGFKKMIIPR 432
>gi|198276682|ref|ZP_03209213.1| hypothetical protein BACPLE_02878 [Bacteroides plebeius DSM 17135]
gi|198270207|gb|EDY94477.1| DNA repair protein RadA [Bacteroides plebeius DSM 17135]
Length = 457
Score = 339 bits (869), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 186/441 (42%), Positives = 273/441 (61%), Gaps = 21/441 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T +VC++CG +W G C +C T E PV + + +P RL
Sbjct: 5 KTVYVCTNCGQESPKWAGKCPSCGQWNTFVEEVV--RKEAPVAKHVAHGIESVRSKPQRL 62
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
E+ +Q RI + E+ RVLGGGLV GSL LIGG+PG+GKSTL+LQ ++
Sbjct: 63 TEIESNEEQ---RI---DMLDEELNRVLGGGLVQGSLTLIGGEPGIGKSTLILQ--TVLR 114
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRM-MIATEELFLYSSTDIEDIVEKVQPLSPRA 291
H ++YVSGEES Q+ RA R+ + L + T +E I ++ +P
Sbjct: 115 LTH-----KRILYVSGEESARQLKLRAVRIPHPENDNLLIACETSLEQIFTHIKNAAPDL 169
Query: 292 LIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVL 351
+IIDSIQT+ + S G ++QV+ECT++LL+FAK+T PV+L GH+ K G IAGP+VL
Sbjct: 170 VIIDSIQTISTENIDSSPGSIVQVRECTASLLKFAKETGTPVILIGHINKEGSIAGPKVL 229
Query: 352 EHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHS 411
EHIVD VL EG++ YR+LRS+KNRFGST ELG++EM Q GL+ VSNPS++ L++ H
Sbjct: 230 EHIVDTVLQFEGDQHYMYRILRSIKNRFGSTAELGIYEMRQDGLRQVSNPSELLLTQDH- 288
Query: 412 DSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMKQAG 469
E ++G+A+A ++G R FLIE+QAL + + R G R +M+++VL K+ G
Sbjct: 289 --EGMSGVAIAGAVEGVRPFLIEVQALVSTAAYGMPQRSATGFDLRRMNMLLAVLEKRVG 346
Query: 470 LKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVS 529
KL + +FLN+ G+ + + A DLAV +AI SS ++ I G+ GE+GL GE+R V+
Sbjct: 347 FKLAQKDVFLNIAGGLKVNDPAIDLAVISAILSSNMDAEIEAGVCMAGEVGLSGEIRPVN 406
Query: 530 RMEKRVSTVAKLGYRKCIVPK 550
R+E+R+S KLG+++ ++PK
Sbjct: 407 RIEQRISEAEKLGFQRMLIPK 427
>gi|312873912|ref|ZP_07733950.1| DNA repair protein RadA [Lactobacillus iners LEAF 2052A-d]
gi|325912443|ref|ZP_08174838.1| DNA repair protein RadA [Lactobacillus iners UPII 143-D]
gi|311090588|gb|EFQ48994.1| DNA repair protein RadA [Lactobacillus iners LEAF 2052A-d]
gi|325475785|gb|EGC78956.1| DNA repair protein RadA [Lactobacillus iners UPII 143-D]
Length = 459
Score = 339 bits (869), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 191/471 (40%), Positives = 275/471 (58%), Gaps = 18/471 (3%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T + C +C Y + G C C + +++ + + + L +P +L
Sbjct: 5 KTQYRCKNCDYVSASYLGRCPNCGAWNQLEKETEVAKTTSNRLTASRLITSIGNNEPKKL 64
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
E++ KQ+ P S E+ RVLGGG+VPGSLVL+GGDPG+GKSTL+LQ+ IA
Sbjct: 65 SEIDIK-KQIRITTPFS-----ELNRVLGGGIVPGSLVLVGGDPGIGKSTLMLQIMGSIA 118
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+ H V+YVSGEES QI RA+R+ I+ EL LYS T++E+I E++ L P L
Sbjct: 119 NSHK------VLYVSGEESASQIKLRAERLHISDTELLLYSETNMENIREQIVDLKPEFL 172
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
+IDSIQT+ G QV+E T+ LL+ AK I V + GHVTK G IAGP++LE
Sbjct: 173 VIDSIQTMNEPSQDSMVGSATQVREVTAELLKIAKIDKITVFVIGHVTKEGAIAGPKILE 232
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EG+K SYR+LRSVKNRFG+T+E+G+FEM + GL V+NPS +FL E+ +
Sbjct: 233 HMVDTVLYFEGDKHHSYRILRSVKNRFGATNEIGMFEMKEEGLSEVTNPSAVFLDERLPN 292
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMKQAGL 470
S G A+ V ++G+R L +IQAL + R +G+ +R ++++VL K+ L
Sbjct: 293 S---TGSAIVVSLEGTRPILADIQALVTPTAFGYAKRTTSGLDYNRVALLLAVLEKRGNL 349
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ FL G+ L E A DLA+ A+ SS+ I F+GE+GL GE+R ++
Sbjct: 350 MLQNQDAFLTATGGIKLNEPAIDLAICMAVASSYKNKEIAVTDCFVGEVGLTGEIRRINN 409
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVFT 581
+E RV A G+++ VPK S +E +G +L E + + FT
Sbjct: 410 IEARVKEAATRGFKRIFVPK-YNVSAKLQSHTTIEIVGVISLMEALKIEFT 459
>gi|429741784|ref|ZP_19275434.1| DNA repair protein RadA [Porphyromonas catoniae F0037]
gi|429158032|gb|EKY00599.1| DNA repair protein RadA [Porphyromonas catoniae F0037]
Length = 459
Score = 339 bits (869), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 190/475 (40%), Positives = 278/475 (58%), Gaps = 29/475 (6%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYS--AGESDEGPVVQRTWL-PQKPEEVQ 168
+T + C++CG +W G C C +++ G+ D T L P +P +Q
Sbjct: 4 KKTIYHCTECGAQYPKWQGFCSQCGVWNSIEEEEIVVGKKDASSSFSATTLSPSRPIRIQ 63
Query: 169 PV-RLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQM 227
+ R EV +LD P E+ RVLGGGLVPGS VL+GG+PG+GKSTL+LQ
Sbjct: 64 DIERREEV-----RLDLGDP-------ELNRVLGGGLVPGSFVLLGGEPGIGKSTLILQT 111
Query: 228 AAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPL 287
L P +Y+SGEES+ Q+ RADR+ + E +Y+ T +E I+ +
Sbjct: 112 V--------LSTPYRTLYISGEESLSQLKMRADRLGGSESECLIYAETSLEKILHTAHDI 163
Query: 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAG 347
P L+IDSIQT+ SAG + Q++EC ALL++ K + V+L GH+ K G IAG
Sbjct: 164 RPDLLVIDSIQTIQTELSDSSAGSVSQIRECAGALLKYCKTEGVAVILIGHINKEGSIAG 223
Query: 348 PRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLS 407
P++LEH VD VL +G+K YR+LR KNRFGST ELG++EM GL+ V NPS+ +S
Sbjct: 224 PKILEHTVDVVLQFDGDKHYMYRILRGQKNRFGSTAELGIYEMRHSGLRPVDNPSEHLMS 283
Query: 408 EQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLM 465
H+ L+G+A+A M+G R FLIE QAL S +T R G R +M+++VL
Sbjct: 284 --HTGLR-LSGVAIAAAMEGVRPFLIETQALVSSAVYATPQRSSTGYDTRRMNMLLAVLE 340
Query: 466 KQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGEL 525
K+AG KL + +FLN+ G+ L++ A DLAV +A+ SS L+ +P G+ GE+GL GE+
Sbjct: 341 KRAGFKLIQKDVFLNIAGGIRLSDPASDLAVISAVLSSSLDLALPEGVCLTGEVGLSGEV 400
Query: 526 RMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
R VSR+E+R+ ++G+R I+P+ SL ++ +G K ++E ++F
Sbjct: 401 RPVSRIEQRLMEAERIGFRAMILPEGNLASLPEDPARKIRLVGVKTVEETFRILF 455
>gi|377557027|ref|ZP_09786693.1| DNA repair protein radA [Lactobacillus gastricus PS3]
gi|376166673|gb|EHS85562.1| DNA repair protein radA [Lactobacillus gastricus PS3]
Length = 457
Score = 339 bits (869), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 185/450 (41%), Positives = 271/450 (60%), Gaps = 36/450 (8%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTM---------KRYSAGESDEGPVVQRTWLPQK 163
+ ++VC +CGY ++ G C C T+ + + +V R PQK
Sbjct: 5 KVHYVCQNCGYNSPRFLGRCPNCGEWNTLVEEVEQTSVAAATKATTTLTGIVAR---PQK 61
Query: 164 PEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTL 223
E+ + V +++L+ RVLGGG+VPGSLVLIGGDPG+GKSTL
Sbjct: 62 INEIDTKKTPRVKTKLRELN--------------RVLGGGIVPGSLVLIGGDPGIGKSTL 107
Query: 224 LLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEK 283
LLQ++ ++ E PV+Y+SGEES QI RA R+ ++ + ++Y T+++ I
Sbjct: 108 LLQVSGQLSL-----ENHPVLYISGEESANQIKMRAQRIAVSGDNFYIYPETNMDSIRAT 162
Query: 284 VQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSG 343
+ L P ++IDS+QT+ GV + G + Q++ T+ L++ AK NI V + GHVTK G
Sbjct: 163 IDNLKPEYVVIDSVQTMQASGVESAIGSVAQIRAVTAQLMQIAKGENITVFVVGHVTKGG 222
Query: 344 DIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSK 403
IAGP++LEH+VD VLY EG+ +YR+LRSVKNRFGST+ELG+FEM GL V+NPS+
Sbjct: 223 TIAGPKILEHMVDTVLYFEGDSHHTYRILRSVKNRFGSTNELGIFEMHDTGLTEVANPSE 282
Query: 404 IFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMII 461
+FL E+ D+ G AV V ++G+R L+E+QAL R +G+ +R +I+
Sbjct: 283 MFLEERLKDA---TGSAVVVSLEGTRPILVEVQALITPTVFGNAQRTASGLDRNRVSLIM 339
Query: 462 SVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGL 521
+VL K+A L LQ +L GV L E A DLA+A +I SS+ + AFIGE+GL
Sbjct: 340 AVLEKRANLLLQNQDAYLQAAGGVKLNEPAIDLALAISIASSYRDKGTRPTDAFIGELGL 399
Query: 522 GGELRMVSRMEKRVSTVAKLGYRKCIVPKS 551
GE+R VSR+E+RV+ AKLG+++ +PK+
Sbjct: 400 TGEVRRVSRIEQRVAEAAKLGFKRVFIPKN 429
>gi|365905415|ref|ZP_09443174.1| DNA repair protein RadA [Lactobacillus versmoldensis KCTC 3814]
Length = 455
Score = 338 bits (868), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 195/472 (41%), Positives = 282/472 (59%), Gaps = 23/472 (4%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTM-KRYSAGESDEGPVVQRTWLPQKPEEVQPV 170
+++ +VC +CGY ++ G C C S M + + ES +RT E +PV
Sbjct: 4 SKSKFVCQNCGYVSPKYLGRCPNCGSWNQMVEEINHVESSAATPSRRT----SDLETKPV 59
Query: 171 RLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAI 230
+L V K+ + LS E+ RVLGGG+VPGSL+LIGGDPG+GKSTLLLQ++
Sbjct: 60 QLDNV-AFEKEPRVKTDLS-----ELNRVLGGGIVPGSLILIGGDPGIGKSTLLLQVSGQ 113
Query: 231 IADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPR 290
+ V+YVSGEES QI RADR+ I + L +Y TD+ I + + L P
Sbjct: 114 LQKFD-----GKVLYVSGEESASQIKMRADRLGINGKNLLVYPQTDMSYIRQTIDELKPD 168
Query: 291 ALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRV 350
L+IDS+QT+ ++ + G + Q++E T+ L+ AK+ NI + + GHVTK G IAGP++
Sbjct: 169 YLVIDSVQTMDEPEISSAVGSVSQIREVTAELMNIAKQQNITIFVVGHVTKGGAIAGPKI 228
Query: 351 LEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQH 410
LEH+VD VLY EG+ SYR+LRSVKNRFGST+E+G+FEM GL V NPS+IFL E+
Sbjct: 229 LEHMVDTVLYFEGDTHHSYRILRSVKNRFGSTNEIGIFEMRTKGLVEVDNPSEIFLEERL 288
Query: 411 SDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQA 468
D+ G AV V M+G+R L+EIQ+L R G+ +R +I++VL K+
Sbjct: 289 KDTN---GSAVVVSMEGTRPILVEIQSLITPTIFGNAKRTATGLDHNRVSVIMAVLEKRG 345
Query: 469 GLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMV 528
L LQ +L GV L E A DLA+A +I SS+ I F+GE+GL GE+R V
Sbjct: 346 NLMLQNQDAYLKATGGVKLDEPAIDLALAMSIASSYKNLGISATDCFVGEVGLTGEVRRV 405
Query: 529 SRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+R+++RV+ KLG+++ VPK+ A ++++ IG + + +N +F
Sbjct: 406 NRIDQRVNEAEKLGFKRIFVPKNNLGDWAKK--QKIQVIGVSTVSDAMNKIF 455
>gi|365924269|ref|ZP_09447032.1| DNA repair protein RadA [Lactobacillus mali KCTC 3596 = DSM 20444]
gi|420265693|ref|ZP_14768227.1| DNA repair protein RadA [Lactobacillus mali KCTC 3596 = DSM 20444]
gi|394427444|gb|EJF00143.1| DNA repair protein RadA [Lactobacillus mali KCTC 3596 = DSM 20444]
Length = 456
Score = 338 bits (868), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 191/475 (40%), Positives = 289/475 (60%), Gaps = 31/475 (6%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTM--KRYSAGESDEGPVVQRTWLPQKPEEVQPV 170
+T +VC DCGY+ ++ G C C + T+ + + ++D+ V + KP+ + V
Sbjct: 5 KTQFVCQDCGYSSPRYLGRCPNCGAWNTLVEEVEKSNKTDKKTRVSFSGNSPKPQLIDEV 64
Query: 171 RLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAI 230
+ + P + E+ RVLGGG+VPGSL+LIGGDPG+GKSTLLLQ++
Sbjct: 65 NVQDN-----------PRTTTASVELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQLSGQ 113
Query: 231 IADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPR 290
+A + V+YVSGEES QI RA R+ + ++ +LY TD+ I + + L P
Sbjct: 114 LAR-----QELTVLYVSGEESAMQIKLRAQRLGVKGQQFYLYPETDMTSIHQYIDKLKPN 168
Query: 291 ALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRV 350
++IDS+QT+ ++ + G + Q++E T+ L++ AK I + + GHVTK G IAGP++
Sbjct: 169 FVVIDSVQTMQEPEMSSAVGSVAQIREVTAELMQIAKTNGITIFIVGHVTKGGAIAGPKI 228
Query: 351 LEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQH 410
LEH+VD VLY EG+ +YR+LR+VKNRFGST+E+G+FEM + GL V NPS+IFL E+
Sbjct: 229 LEHMVDTVLYFEGDLHHAYRILRAVKNRFGSTNEIGIFEMKEGGLYEVQNPSEIFLEERL 288
Query: 411 SDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMKQA 468
S + G A+ V ++G+R L+EIQAL + R G+ +R +I++VL K+A
Sbjct: 289 SGA---TGSAIVVSLEGTRPILVEIQALVTPTAFGNAKRTTTGLDHNRISLIMAVLEKRA 345
Query: 469 GLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMV 528
GL LQ +L GV L E A DLA+A +I SS+ + FIGE+GL GE+R V
Sbjct: 346 GLLLQNQDAYLKAAGGVKLDEPAIDLAIAVSIVSSYRDAQSQATDCFIGELGLTGEIRRV 405
Query: 529 SRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGF---EQMEFIGCKNLKEVINVVF 580
+R+E+RV+ AKLG+++ I+PK+ +LA G+ ++ +G L E + V F
Sbjct: 406 NRIEQRVAEAAKLGFKRVILPKN---NLA--GWTPPRNIKVVGVSTLSEALKVTF 455
>gi|293369989|ref|ZP_06616556.1| DNA repair protein RadA [Bacteroides ovatus SD CMC 3f]
gi|292634907|gb|EFF53429.1| DNA repair protein RadA [Bacteroides ovatus SD CMC 3f]
Length = 455
Score = 338 bits (868), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 185/470 (39%), Positives = 284/470 (60%), Gaps = 22/470 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T +VCS+CG +W G C +C G Y + P +R + ++ +P+ L
Sbjct: 5 KTVYVCSNCGQDSPKWVGKCPSC---GEWNTYVEEIVRKEPTNRRPVSGIETQKPKPLAL 61
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
++ + P + +E+ RVLGGGLV GSLVLIGG+PG+GKSTL++Q +
Sbjct: 62 SDIEADDE------PRINMHDDELNRVLGGGLVQGSLVLIGGEPGIGKSTLVMQTVLHMP 115
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+ ++YVSGEES Q+ RA+R+ + + + T +E I ++ +P +
Sbjct: 116 E-------KKILYVSGEESARQLKLRANRLSDTSSDCLIVCETSLEQIYVHIKNTNPDLV 168
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQT+ + S G + QV+EC++++LRFAK+T+ PVLL GH+ K G IAGP+VLE
Sbjct: 169 IIDSIQTISTESIESSPGSIAQVRECSASILRFAKETHTPVLLIGHINKEGSIAGPKVLE 228
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
HIVD VL EG++ YR+LRS+KNRFGST ELG++EM Q GL+ VSNPS++ LS+ H
Sbjct: 229 HIVDTVLQFEGDQHYMYRILRSIKNRFGSTAELGIYEMRQDGLRQVSNPSELLLSQDH-- 286
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
E ++G+A+A ++G R FLIE QAL S R G R +M+++VL K+ G
Sbjct: 287 -EGMSGVAIASAIEGIRPFLIETQALVSSAVYGNPQRSATGFDLRRMNMLLAVLEKRVGF 345
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
KL + +FLN+ G+ + + A DL V +AI SS ++ I + GEIGL GE+R V+R
Sbjct: 346 KLAQKDVFLNIAGGLKVNDPAIDLPVISAILSSNMDAAIEPEVCMAGEIGLSGEIRPVNR 405
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+E+R+ KLG+++ ++PK + + T ++E + + ++E +F
Sbjct: 406 IEQRIGEAEKLGFKRFLLPKYNLQGIDTQKL-KIELVPVRKVEEAFRALF 454
>gi|423071000|ref|ZP_17059775.1| DNA repair protein radA [Streptococcus intermedius F0413]
gi|355364362|gb|EHG12094.1| DNA repair protein radA [Streptococcus intermedius F0413]
Length = 471
Score = 338 bits (868), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 191/442 (43%), Positives = 269/442 (60%), Gaps = 22/442 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T +VC +CGY ++ G C C S + E E V+ + E+ +PV+L
Sbjct: 18 KTTFVCQECGYNSPKYLGRCPNCSSWSSFV-----EEIEVAEVKNARVSLTGEKTRPVKL 72
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
+V R+ + E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ +A
Sbjct: 73 NQVTSSQAT---RVKTNM---EEFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLA 126
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+ V YVSGEES EQI R++R+ E +LY+ T+++ I +++ + P L
Sbjct: 127 N------KGTVFYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQSIRAEIEKVQPDFL 180
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQTV ++ G + QV+E T+ L++ AK NI + GHVTK G +AGPR+LE
Sbjct: 181 IIDSIQTVMSPEISSVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTLAGPRMLE 240
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS++FL E+
Sbjct: 241 HMVDTVLYFEGERQHTFRILRAVKNRFGSTNEIGIFEMRSGGLVEVLNPSQVFLEERLDG 300
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
+ G A+ V M+G+R L E+QAL R G+ +R +I++VL K+ GL
Sbjct: 301 A---TGSAIVVTMEGTRPILAEVQALVTPTVFGNAKRTTTGLDFNRVSLIMAVLEKRCGL 357
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ +L GV L E A DLAVA AI SS+ E P +IGEIGL GE+R V+R
Sbjct: 358 LLQNQDAYLKSAGGVRLDEPAIDLAVAVAIASSYKEKPTTPQECYIGEIGLTGEIRRVNR 417
Query: 531 MEKRVSTVAKLGYRKCIVPKSA 552
+E+R++ +KLG+ K VPK++
Sbjct: 418 IEQRLNEASKLGFTKIFVPKNS 439
>gi|146319687|ref|YP_001199399.1| DNA repair protein RadA [Streptococcus suis 05ZYH33]
gi|146321881|ref|YP_001201592.1| DNA repair protein RadA [Streptococcus suis 98HAH33]
gi|253752681|ref|YP_003025822.1| DNA repair protein RadA [Streptococcus suis SC84]
gi|253754507|ref|YP_003027648.1| DNA repair protein RadA [Streptococcus suis P1/7]
gi|253756440|ref|YP_003029580.1| DNA repair protein RadA [Streptococcus suis BM407]
gi|386578837|ref|YP_006075243.1| DNA repair protein RadA [Streptococcus suis GZ1]
gi|386580905|ref|YP_006077310.1| DNA repair protein RadA [Streptococcus suis JS14]
gi|386589110|ref|YP_006085511.1| DNA repair protein RadA [Streptococcus suis A7]
gi|403062445|ref|YP_006650661.1| DNA repair protein RadA [Streptococcus suis S735]
gi|145690493|gb|ABP90999.1| Predicted ATP-dependent serine protease [Streptococcus suis
05ZYH33]
gi|145692687|gb|ABP93192.1| Predicted ATP-dependent serine protease [Streptococcus suis
98HAH33]
gi|251816970|emb|CAZ52619.1| putative DNA repair protein [Streptococcus suis SC84]
gi|251818904|emb|CAZ56747.1| putative DNA repair protein [Streptococcus suis BM407]
gi|251820753|emb|CAR47515.1| putative DNA repair protein [Streptococcus suis P1/7]
gi|292559300|gb|ADE32301.1| DNA repair protein RadA [Streptococcus suis GZ1]
gi|319759097|gb|ADV71039.1| DNA repair protein RadA [Streptococcus suis JS14]
gi|354986271|gb|AER45169.1| DNA repair protein RadA [Streptococcus suis A7]
gi|402809771|gb|AFR01263.1| DNA repair protein RadA [Streptococcus suis S735]
Length = 455
Score = 338 bits (868), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 189/470 (40%), Positives = 277/470 (58%), Gaps = 24/470 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T +VC C Y ++ G C C S + + V T +P ++ V
Sbjct: 7 KTTFVCQSCEYHSPKYLGRCPNCGSWSSFVEEVEVAEVKNERVSLTGEKTRPMKLNEVSS 66
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
++V + ++ E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ ++
Sbjct: 67 IQVARTKTNME-----------EFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLS 115
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+ V+YVSGEES +QI RA+R+ E +LY+ T+++ I +++ + P L
Sbjct: 116 TI------GTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSIRTEIEKIKPDFL 169
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQT+ ++ G + QV+E T+ L++ AK NI + GH+TK G +AGPR LE
Sbjct: 170 IIDSIQTIMSPDISSVQGSVSQVREVTNELMQIAKTNNIATFIVGHMTKEGTLAGPRTLE 229
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS++FL E+
Sbjct: 230 HMVDTVLYFEGERQHTFRILRAVKNRFGSTNEIGIFEMQSQGLVEVLNPSEVFLEERLDG 289
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
+ G A+ V M+G+R L E+QAL R G+ +RA +I++VL K+AGL
Sbjct: 290 A---TGSAIVVTMEGTRPILAEVQALVTPTMFGNAKRTTTGLDFNRASLIMAVLEKRAGL 346
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ +L GV L E A DLAVA A+ SS+ + P F+GEIGL GE+R V+R
Sbjct: 347 LLQNQDAYLKSAGGVKLDEPAIDLAVAVALASSYKDKPTNPQECFMGEIGLTGEIRRVNR 406
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+E+R++ AKLG+ K PK++ + +++ IG + EV+ VF
Sbjct: 407 IEQRINEAAKLGFTKVYAPKNSLTGIKVP--KEITVIGVTTIGEVLQKVF 454
>gi|309808430|ref|ZP_07702329.1| DNA repair protein RadA [Lactobacillus iners LactinV 01V1-a]
gi|325913118|ref|ZP_08175488.1| DNA repair protein RadA [Lactobacillus iners UPII 60-B]
gi|349611883|ref|ZP_08891113.1| DNA repair protein RadA [Lactobacillus sp. 7_1_47FAA]
gi|308168258|gb|EFO70377.1| DNA repair protein RadA [Lactobacillus iners LactinV 01V1-a]
gi|325477539|gb|EGC80681.1| DNA repair protein RadA [Lactobacillus iners UPII 60-B]
gi|348608348|gb|EGY58333.1| DNA repair protein RadA [Lactobacillus sp. 7_1_47FAA]
Length = 459
Score = 338 bits (868), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 190/471 (40%), Positives = 275/471 (58%), Gaps = 18/471 (3%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T + C +C Y + G C C + +++ + + + L +P +L
Sbjct: 5 KTQYRCKNCDYVSASYLGRCPNCGAWNQLEKETEVAKTTSNRLTASRLITAIGNNEPKKL 64
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
E++ KQ+ P S E+ RVLGGG+VPGSLVL+GGDPG+GKSTL+LQ+ I+
Sbjct: 65 SEIDIK-KQIRITTPFS-----ELNRVLGGGIVPGSLVLVGGDPGIGKSTLMLQIMGSIS 118
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+ H V+YVSGEES QI RA+R+ I+ EL LYS T++E+I E++ L P L
Sbjct: 119 NAHK------VLYVSGEESASQIKMRAERLHISDTELLLYSETNMENIREQIVDLKPEFL 172
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
+IDSIQT+ G QV+E T+ LL+ AK I V + GHVTK G IAGP++LE
Sbjct: 173 VIDSIQTMNEPSQDSMVGSATQVREVTAELLKIAKIDKITVFVIGHVTKEGAIAGPKILE 232
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EG+K SYR+LRSVKNRFG+T+E+G+FEM + GL V+NPS +FL E+ +
Sbjct: 233 HMVDTVLYFEGDKHHSYRILRSVKNRFGATNEIGMFEMKEEGLSEVTNPSAVFLDERLPN 292
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMKQAGL 470
S G A+ V ++G+R L +IQAL + R +G+ +R ++++VL K+ L
Sbjct: 293 S---TGSAIVVSLEGTRPILADIQALVTPTAFGYAKRTTSGLDYNRVALLLAVLEKRGNL 349
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ FL G+ L E A DLA+ A+ SS+ I F+GE+GL GE+R ++
Sbjct: 350 MLQNQDAFLTATGGIKLNEPAIDLAICMAVASSYKNKEIAVTDCFVGEVGLTGEIRRINN 409
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVFT 581
+E RV A G+++ VPK S +E +G +L E + + FT
Sbjct: 410 IEARVKEAATRGFKRIFVPK-YNVSAKLQSHTTIEIVGVISLMEALKIEFT 459
>gi|15674421|ref|NP_268595.1| DNA repair protein RadA [Streptococcus pyogenes SF370]
gi|71910014|ref|YP_281564.1| DNA repair protein RadA [Streptococcus pyogenes MGAS5005]
gi|410679890|ref|YP_006932292.1| DNA repair protein RadA [Streptococcus pyogenes A20]
gi|17433158|sp|Q9A1K1.1|RADA_STRP1 RecName: Full=DNA repair protein RadA homolog; AltName: Full=DNA
repair protein Sms homolog
gi|13621514|gb|AAK33316.1| putative DNA repair protein [Streptococcus pyogenes M1 GAS]
gi|71852796|gb|AAZ50819.1| DNA repair protein [Streptococcus pyogenes MGAS5005]
gi|395454726|dbj|BAM31065.1| DNA repair protein [Streptococcus pyogenes M1 476]
gi|409692479|gb|AFV37339.1| DNA repair protein RadA [Streptococcus pyogenes A20]
Length = 453
Score = 338 bits (868), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 187/442 (42%), Positives = 270/442 (61%), Gaps = 22/442 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+ ++C +CGY ++ G C C + + + + V E+ +PV+L
Sbjct: 5 KATFICQECGYQSPKYLGRCPNCSAWSSFVEEVEVKEVKNARVSLAG-----EKSRPVKL 59
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
+V+ + + + + +E RVLGGG+VPGSL+LIGGDPG+GKSTLLLQ++ +A
Sbjct: 60 KDVDN----ISYHRTQTDM--SEFNRVLGGGVVPGSLILIGGDPGIGKSTLLLQVSTQLA 113
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+ V+YVSGEES EQI R++R+ E +LY+ T+++ I +++ + P L
Sbjct: 114 N------KGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQAIRTEIENIKPDFL 167
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQT+ + G G + QV+E T+ L++ AK NI + GHVTK G +AGPR+LE
Sbjct: 168 IIDSIQTIMSPDITGVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTLAGPRMLE 227
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS++FL E+
Sbjct: 228 HMVDTVLYFEGERHHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDG 287
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
+ G AV V M+GSR L E+Q+L R G+ +R +I++VL K+ GL
Sbjct: 288 A---TGSAVVVTMEGSRPILAEVQSLVTPTVFGNARRTTTGLDFNRVSLIMAVLEKRCGL 344
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ +L GV L E A DLAVA AI SS+ E P AF+GEIGL GE+R V+R
Sbjct: 345 LLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTSPQEAFLGEIGLTGEIRRVTR 404
Query: 531 MEKRVSTVAKLGYRKCIVPKSA 552
+E+R++ AKLG+ K PK+A
Sbjct: 405 IEQRINEAAKLGFTKVYAPKNA 426
>gi|19745372|ref|NP_606508.1| DNA repair protein RadA [Streptococcus pyogenes MGAS8232]
gi|50913577|ref|YP_059549.1| DNA repair protein RadA [Streptococcus pyogenes MGAS10394]
gi|94993591|ref|YP_601689.1| DNA repair protein RadA [Streptococcus pyogenes MGAS10750]
gi|139473060|ref|YP_001127775.1| DNA repair protein RadA [Streptococcus pyogenes str. Manfredo]
gi|306828056|ref|ZP_07461321.1| DNA repair protein RadA [Streptococcus pyogenes ATCC 10782]
gi|383479393|ref|YP_005388287.1| DNA repair protein RadA [Streptococcus pyogenes MGAS15252]
gi|383493318|ref|YP_005410994.1| DNA repair protein RadA [Streptococcus pyogenes MGAS1882]
gi|386362068|ref|YP_006071399.1| DNA repair protein RadA [Streptococcus pyogenes Alab49]
gi|421892469|ref|ZP_16323125.1| DNA repair protein RadA [Streptococcus pyogenes NS88.2]
gi|73913730|sp|Q5XDZ7.1|RADA_STRP6 RecName: Full=DNA repair protein RadA homolog; AltName: Full=DNA
repair protein Sms homolog
gi|73913731|sp|Q8P2Q5.1|RADA_STRP8 RecName: Full=DNA repair protein RadA homolog; AltName: Full=DNA
repair protein Sms homolog
gi|19747478|gb|AAL97007.1| putative DNA repair protein [Streptococcus pyogenes MGAS8232]
gi|50902651|gb|AAT86366.1| RadA [Streptococcus pyogenes MGAS10394]
gi|94547099|gb|ABF37145.1| DNA repair protein RadA [Streptococcus pyogenes MGAS10750]
gi|134271306|emb|CAM29523.1| putative DNA repair protein [Streptococcus pyogenes str. Manfredo]
gi|304429772|gb|EFM32816.1| DNA repair protein RadA [Streptococcus pyogenes ATCC 10782]
gi|350276477|gb|AEQ23845.1| DNA repair protein RadA [Streptococcus pyogenes Alab49]
gi|378927383|gb|AFC65589.1| DNA repair protein RadA [Streptococcus pyogenes MGAS15252]
gi|378929046|gb|AFC67463.1| DNA repair protein RadA [Streptococcus pyogenes MGAS1882]
gi|379981778|emb|CCG26847.1| DNA repair protein RadA [Streptococcus pyogenes NS88.2]
Length = 453
Score = 338 bits (868), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 187/442 (42%), Positives = 270/442 (61%), Gaps = 22/442 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+ ++C +CGY ++ G C C + + + + V E+ +PV+L
Sbjct: 5 KATFICQECGYQSPKYLGRCPNCSAWSSFVEEVEVKEVKNARVSLAG-----EKSRPVKL 59
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
+V+ + + + + +E RVLGGG+VPGSL+LIGGDPG+GKSTLLLQ++ +A
Sbjct: 60 KDVDN----ISYHRTQTDM--SEFNRVLGGGVVPGSLILIGGDPGIGKSTLLLQVSTQLA 113
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+ V+YVSGEES EQI R++R+ E +LY+ T+++ I +++ + P L
Sbjct: 114 N------KGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQAIRTEIENIKPDFL 167
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQT+ + G G + QV+E T+ L++ AK NI + GHVTK G +AGPR+LE
Sbjct: 168 IIDSIQTIMSPDITGVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTLAGPRMLE 227
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS++FL E+
Sbjct: 228 HMVDTVLYFEGERHHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDG 287
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
+ G AV V M+GSR L E+Q+L R G+ +R +I++VL K+ GL
Sbjct: 288 A---TGSAVVVTMEGSRPILAEVQSLVTPTVFGNARRTTTGLDFNRVSLIMAVLEKRCGL 344
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ +L GV L E A DLAVA AI SS+ E P AF+GEIGL GE+R V+R
Sbjct: 345 LLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTSPQEAFLGEIGLTGEIRRVTR 404
Query: 531 MEKRVSTVAKLGYRKCIVPKSA 552
+E+R++ AKLG+ K PK+A
Sbjct: 405 IEQRINEAAKLGFTKVYAPKNA 426
>gi|409198715|ref|ZP_11227378.1| DNA repair protein RadA [Marinilabilia salmonicolor JCM 21150]
Length = 456
Score = 338 bits (868), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 186/444 (41%), Positives = 277/444 (62%), Gaps = 25/444 (5%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVV-QRTWLPQKPEEVQPV 170
+T +VC +CG +W G C AC G Y S G +R L ++ +PV
Sbjct: 4 TKTVFVCQNCGAESPKWVGKCYAC---GEWNTYVEEISITGKTKDKRLSLSLGNDKQKPV 60
Query: 171 RLLEVN-KGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAA 229
+ V + ++D I E+ RVLGGG+VPGSLVL+GG+PG+GKSTL+LQMA
Sbjct: 61 AVSSVTVSDIPRIDTGIV-------ELNRVLGGGIVPGSLVLLGGEPGIGKSTLVLQMAM 113
Query: 230 IIADVHDLGEPSPVVYVSGEESVEQIGNRADRMM-IATEELFLYSSTDIEDIVEKVQPLS 288
+ ++YVSGEES +QI RADR+ + + L T +E I+ ++ +
Sbjct: 114 KLTS-------QKILYVSGEESPQQIKLRADRLSDLNGDHCMLVGETSLEQILVHIENEN 166
Query: 289 PRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGP 348
P ++IDSIQT+ + + G + Q++ECT+A+L+ AK+ NIPVLL GH+ K G++AGP
Sbjct: 167 PGFVVIDSIQTMEREAIESAPGSVSQIRECTAAILKVAKEKNIPVLLIGHINKEGNLAGP 226
Query: 349 RVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSE 408
+VLEHIVD VL EG++ YR+LRSVKNRFGST E+G+FEM GL+ VSNPS++ L++
Sbjct: 227 KVLEHIVDVVLQFEGDRQYMYRILRSVKNRFGSTSEIGIFEMQSDGLREVSNPSEMLLAQ 286
Query: 409 QHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMK 466
D ++G+A++ M+G R F+IE+QAL + + T R G R +M+++VL K
Sbjct: 287 HEED---MSGIAISAAMEGIRPFMIEVQALASTAAYGTPQRSSTGFDLRRLNMLLAVLEK 343
Query: 467 QAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELR 526
+AG KL +FLN+ G+ +++ A DLAV ++ SS + +P G+ GE+GL GE+R
Sbjct: 344 RAGFKLAAKDVFLNIAGGLKVSDPAIDLAVVTSVLSSNTDLTVPRGVCLTGEVGLSGEIR 403
Query: 527 MVSRMEKRVSTVAKLGYRKCIVPK 550
V+R+E+RVS KLG++ +VP+
Sbjct: 404 PVTRIEQRVSEAEKLGFKSIVVPR 427
>gi|359300232|ref|ZP_09186071.1| DNA repair protein RadA [Haemophilus [parainfluenzae] CCUG 13788]
Length = 460
Score = 338 bits (868), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 193/483 (39%), Positives = 285/483 (59%), Gaps = 39/483 (8%)
Query: 109 GKANRTNWVCSDCGYTDGQWWGMCRACESVGTM---------KRYSAGESDEGPVVQRTW 159
KA +T +VC+DCG +W G C+ C S T+ + S G+ G + +
Sbjct: 2 AKAPKTAYVCNDCGAEYSKWMGQCKECLSWNTISEVRLISAKENKSKGDRFSGYAGETSG 61
Query: 160 LPQKPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVG 219
Q E+ + + G ++LD RVLGGG+VPGS +LIGG PG G
Sbjct: 62 KVQALSEISLQEVPRFSSGFQELD--------------RVLGGGVVPGSAILIGGHPGAG 107
Query: 220 KSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIED 279
KSTLLLQ+ L + P +YV+GEES++Q+ RA+R+ + TE L + S T +E
Sbjct: 108 KSTLLLQVMC------GLSQALPTLYVTGEESLQQVAMRANRLGLPTEHLKMLSETSVEH 161
Query: 280 IVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHV 339
I P+ ++IDSIQ ++L + S G + QV+EC + L R+AK + +++ GHV
Sbjct: 162 ICNIADQEKPKLMVIDSIQVMHLADIQSSPGSVAQVRECAAFLTRYAKTRQVAIIMVGHV 221
Query: 340 TKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVS 399
TK G IAGP+VLEH +DA L +EGE S +R LRS KNRFG+ +ELGVF M++ GL+ V
Sbjct: 222 TKDGTIAGPKVLEHAIDASLLLEGESDSRFRTLRSQKNRFGAVNELGVFAMTEQGLKEVK 281
Query: 400 NPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVS---RHVNGIQASR 456
NPS IFLS SD E +AG +V V+ +G+R L+EIQAL V S ++ R G+ +R
Sbjct: 282 NPSAIFLS--RSD-EQVAGSSVMVLWEGTRPLLVEIQAL-VDHSMLANPRRVAVGLDHNR 337
Query: 457 ADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFI 516
++++VL + GL++ + +F+NVV GV +TET+ DLA+ A+ SSF P+P +
Sbjct: 338 LSLLLAVLHRHGGLQMSDQDVFVNVVGGVKVTETSADLALILALISSFRNRPLPQDLVVF 397
Query: 517 GEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVI 576
GE+GL GE+R V ++R+S AK G+++ IVP + A G ME I K L + +
Sbjct: 398 GEVGLAGEIRPVPSGQERISEAAKHGFKRAIVPYANAPKKAIKG---MEVITVKKLSDAL 454
Query: 577 NVV 579
+++
Sbjct: 455 DII 457
>gi|336416462|ref|ZP_08596795.1| DNA repair protein RadA [Bacteroides ovatus 3_8_47FAA]
gi|335937519|gb|EGM99417.1| DNA repair protein RadA [Bacteroides ovatus 3_8_47FAA]
Length = 455
Score = 338 bits (868), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 185/470 (39%), Positives = 284/470 (60%), Gaps = 22/470 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T +VCS+CG +W G C +C G Y + P +R + ++ +P+ L
Sbjct: 5 KTVYVCSNCGQDSPKWVGKCPSC---GEWNTYVEEIVRKEPTNRRPVSGIETQKPKPLAL 61
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
++ + P + +E+ RVLGGGLV GSLVLIGG+PG+GKSTL++Q +
Sbjct: 62 SDIEADDE------PRINMHDDELNRVLGGGLVQGSLVLIGGEPGIGKSTLVMQTVLHMP 115
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+ ++YVSGEES Q+ RA+R+ + + + T +E I ++ +P +
Sbjct: 116 E-------KKILYVSGEESARQLKLRAERLSDTSSDCLIVCETSLEQIYVHIKNTNPDLV 168
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQT+ + S G + QV+EC++++LRFAK+T+ PVLL GH+ K G IAGP+VLE
Sbjct: 169 IIDSIQTISTESIESSPGSIAQVRECSASILRFAKETHTPVLLIGHINKEGSIAGPKVLE 228
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
HIVD VL EG++ YR+LRS+KNRFGST ELG++EM Q GL+ VSNPS++ LS+ H
Sbjct: 229 HIVDTVLQFEGDQHYMYRILRSIKNRFGSTAELGIYEMRQDGLRQVSNPSELLLSQDH-- 286
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
E ++G+A+A ++G R FLIE QAL S R G R +M+++VL K+ G
Sbjct: 287 -EGMSGVAIASAIEGIRPFLIETQALVSSAVYGNPQRSATGFDLRRMNMLLAVLEKRVGF 345
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
KL + +FLN+ G+ + + A DL V +AI SS ++ I + GEIGL GE+R V+R
Sbjct: 346 KLAQKDVFLNIAGGLKVNDPAIDLPVISAILSSNMDAAIEPEVCMAGEIGLSGEIRPVNR 405
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+E+R+ KLG+++ ++PK + + T ++E + + ++E +F
Sbjct: 406 IEQRIGEAEKLGFKRFLLPKYNLQGIDTQKL-KIELVPVRKVEEAFRALF 454
>gi|260102405|ref|ZP_05752642.1| DNA repair protein RadA [Lactobacillus helveticus DSM 20075]
gi|260083773|gb|EEW67893.1| DNA repair protein RadA [Lactobacillus helveticus DSM 20075]
Length = 458
Score = 338 bits (868), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 190/471 (40%), Positives = 277/471 (58%), Gaps = 21/471 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T + C CGY + G C C + ++ + + L QK +PV L
Sbjct: 5 KTQYKCRSCGYISASYLGRCPNCGAWNQFEKKTEEVQKRSTKATASRLIQKTGLNEPVHL 64
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
+K + + RIP E+ RVLGGG+VPGSLVLIGGDPG+GKSTL+L + +
Sbjct: 65 ---DKIKAEKEERIPTKS---EELNRVLGGGIVPGSLVLIGGDPGIGKSTLMLHIMS--- 115
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
DL E V+YVSGEES QI RADR+ + + LY TD+ DI E++ + P +
Sbjct: 116 ---DLAEKYKVLYVSGEESANQIKLRADRLGVGQSNMLLYPETDMHDIREQINDVKPDFV 172
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
+IDSIQT+ + G QV+E TS L++ AK I V + GHVTK G IAGP++LE
Sbjct: 173 VIDSIQTMNEPSLDSMTGSASQVREVTSELMKIAKMDAITVFVIGHVTKEGAIAGPKILE 232
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EG++ +YR+L SVKNRFG+ +E+G+FEM GL+ V+NPS IFL ++ +
Sbjct: 233 HMVDTVLYFEGDEHHTYRILHSVKNRFGAANEIGMFEMKNEGLREVTNPSSIFLDQRLPN 292
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMKQAGL 470
S G AV V ++G+R L EIQAL + R +GI ++A ++++VL K+ L
Sbjct: 293 S---TGSAVVVSLEGTRPLLAEIQALVTPTAFGYAKRTTSGISFNKASLLLAVLEKRGNL 349
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ I+L G+ L E A DLA+A ++ SS+ + I F+GE+GL GE+R V +
Sbjct: 350 MLQNQDIYLTATGGIKLNEPAIDLAIAMSVASSYTDKEISPTDCFVGEVGLTGEVRRVDK 409
Query: 531 MEKRVSTVAKLGYRKCIVPK-SAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+E RV AK+G+++ +PK + +SL G +E I ++ + + +VF
Sbjct: 410 IEARVKEAAKVGFKRIFIPKHNMYQSLTENG---IEVIPVASIPQALELVF 457
>gi|422302663|ref|ZP_16390024.1| DNA repair protein radA homolog [Microcystis aeruginosa PCC 9806]
gi|389788042|emb|CCI16589.1| DNA repair protein radA homolog [Microcystis aeruginosa PCC 9806]
Length = 508
Score = 338 bits (868), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 195/475 (41%), Positives = 282/475 (59%), Gaps = 51/475 (10%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKP------E 165
+RT ++CS CG QW G C +C++ GT++ + V + W +P
Sbjct: 4 SRTIYICSACGAESPQWLGKCPSCDTYGTLEEQVMAGGNNPAVNRPGWQNSRPNNGKGQR 63
Query: 166 EVQP---VRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKST 222
QP VR E+ + ++ R P SG E RVLGGG+VPGSLVLIGGDPG+GKST
Sbjct: 64 NPQPRISVRFSEITQYEQE---RFP-SGY--GEFDRVLGGGIVPGSLVLIGGDPGIGKST 117
Query: 223 LLLQMAAIIADVHDLGEPSP-VVYVSGEESVEQIGNRADRMMIAT--------------- 266
LLLQ+ + L + P ++YVS EES +QI RA R+ +
Sbjct: 118 LLLQVT------NQLAQRLPRILYVSAEESGQQIKLRAARLGVGVVPVESENNGNGKEKK 171
Query: 267 ---------EELFLYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKE 317
L++ TD+E+I+ +++ L P+ +IDSIQT+Y + + G + QV+E
Sbjct: 172 ASESTSELDNHLYVLPETDLEEILRELESLRPQVAVIDSIQTLYFGALTSAPGSVAQVRE 231
Query: 318 CTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKN 377
CTSAL++ AK+ NI +L+ GHVTK G IAGPRVLEH+VD VLY EG++++S+RLLRSVKN
Sbjct: 232 CTSALMQVAKRENITLLIVGHVTKEGAIAGPRVLEHLVDTVLYFEGDRYASHRLLRSVKN 291
Query: 378 RFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQA 437
RFG+T E+G+FEM GL V NPS++FL + EF G A V +G+R ++E+QA
Sbjct: 292 RFGATHEIGIFEMVDHGLVEVENPSELFLGNR---DEFSPGTATVVACEGTRPIVVELQA 348
Query: 438 LCVSGSTVS--RHVNGIQASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLA 495
L S S R GI+ +R I++VL K+ G+ L + ++ G+ + E A DL
Sbjct: 349 LVSPTSYASPRRSTTGIEYNRLQQILAVLEKRVGIPLSKLDAYVASAGGLGVEEPAADLG 408
Query: 496 VAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPK 550
VA A+ +SF + + IGE+GLGG++R+VS+ME R+ AKLG+++ IVP+
Sbjct: 409 VAIAVVASFRDRVVDPRTVLIGEVGLGGQVRLVSQMELRLKEAAKLGFKRAIVPR 463
>gi|89893185|ref|YP_516672.1| DNA repair protein RadA [Desulfitobacterium hafniense Y51]
gi|89332633|dbj|BAE82228.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 449
Score = 338 bits (868), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 202/471 (42%), Positives = 281/471 (59%), Gaps = 31/471 (6%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T + C CG +W G C C T+ VV+R + P V+ L
Sbjct: 5 KTRFFCQSCGQESPRWLGKCPGCGEWNTLVE---------EVVERAAAKRTPLGVKATPL 55
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
E+ + + R+ SG E+ RVLGGG+VPGS VL+GG+PG+GKSTLLLQ A ++A
Sbjct: 56 TEIQI---REEERVS-SG--SQELNRVLGGGIVPGSFVLLGGEPGIGKSTLLLQTAGLLA 109
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
D V+Y+SGEES +QI RA+R+ I L + + T +E + + + P L
Sbjct: 110 KGMD------VLYISGEESEKQIKLRAERLGIKESRLHILTETRLEVVRDVALAMGPGLL 163
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
I+DSIQT+ L + +AG + QV+E + L+R AK+ IP+ L GHVTK G IAGPRVLE
Sbjct: 164 IVDSIQTMVLEELQAAAGSVSQVREGAAFLMRLAKEEEIPIFLVGHVTKEGAIAGPRVLE 223
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
HIVD VLY EG++ YRLLR+VKNRFGST+E+GVFEM + GL V NPSK+FL E +
Sbjct: 224 HIVDTVLYFEGDRHHVYRLLRAVKNRFGSTNEIGVFEMHEDGLVEVPNPSKVFLGENSAT 283
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVS---RHVNGIQASRADMIISVLMKQAG 469
+ G +VAVI++GSR L+EIQAL V+ +T R GI +R M+++VL K+ G
Sbjct: 284 A---PGSSVAVIVEGSRPLLVEIQAL-VTPTTYGPPRRTATGIDYNRILMLLAVLDKKVG 339
Query: 470 LKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVS 529
L L +F+N+ G+ + E DLA AAI SS E P+ A IGE+GL GE+R +S
Sbjct: 340 LHLGAQDVFINIAGGIRIDEPGVDLACIAAIASSLGERPLKR-YALIGEVGLTGEVRGIS 398
Query: 530 RMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
++E RV KLG+ CI+P+ ++ G I K ++E + V+F
Sbjct: 399 QIENRVKEAVKLGFEGCIIPRINVSAVKVPG--NFTVIAVKTVEEAVQVMF 447
>gi|163753483|ref|ZP_02160607.1| DNA repair protein [Kordia algicida OT-1]
gi|161327215|gb|EDP98540.1| DNA repair protein [Kordia algicida OT-1]
Length = 452
Score = 338 bits (868), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 181/446 (40%), Positives = 277/446 (62%), Gaps = 21/446 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T + C +CG +W G C +C+ T+ + V+ W Q+ + +
Sbjct: 5 KTTFFCQNCGSQFAKWQGQCSSCKQWNTIVEEVIQKE-----VKANWQKQEKSVSRVSKP 59
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
+++ + + R+P S +E+ RVLGGG+VPGSL+L+GG+PG+GKSTLLLQ++
Sbjct: 60 TLIHEISSETEKRLPTSD---SELDRVLGGGIVPGSLILLGGEPGIGKSTLLLQIS---- 112
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
L P +YVSGEES +QI RA+R+ + + T ++I +++ + P L
Sbjct: 113 ----LKLPYKTLYVSGEESQKQIKMRAERISQKNSNCLVLTETKTQNIFKQIAEVEPDIL 168
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
+IDSIQT++ + SAG + Q++ECT+ L++FAK++ IPV L GH+TK G+IAGP++LE
Sbjct: 169 VIDSIQTLHSDYIESSAGSISQIRECTTELIKFAKESGIPVFLIGHITKDGNIAGPKILE 228
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VL EG++ YR+LRS+KNRFGST ELG++EM GL+ VSNPS+I +S+ +
Sbjct: 229 HMVDTVLQFEGDRNHVYRILRSLKNRFGSTSELGIYEMLSDGLREVSNPSEILISK---N 285
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
++ L+G A+A ++G+R +IEIQAL + T R G A R +M+++VL K+AG
Sbjct: 286 ADELSGTAIAATLEGARPLMIEIQALVSTAVYGTPQRSTTGYNAKRLNMLLAVLEKRAGF 345
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
KL +FLN+ G+++ +TA DLAV AAI SS + I F EIGL GE+R V+R
Sbjct: 346 KLAAKDVFLNITGGISIDDTAIDLAVIAAILSSNEDEEISKTNCFAAEIGLAGEIRPVNR 405
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSL 556
+++R+ KLG+ K + SL
Sbjct: 406 IDQRILEAEKLGFTTFFTSKHNKISL 431
>gi|269926454|ref|YP_003323077.1| DNA repair protein RadA [Thermobaculum terrenum ATCC BAA-798]
gi|269790114|gb|ACZ42255.1| DNA repair protein RadA [Thermobaculum terrenum ATCC BAA-798]
Length = 460
Score = 338 bits (867), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 207/479 (43%), Positives = 292/479 (60%), Gaps = 35/479 (7%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQ--RTWLPQKPEEVQP 169
+RT +VC+ CG +W G C C G Y P T + +P ++
Sbjct: 6 SRTVYVCNSCGNVSPKWQGRCPEC---GQWNTYVETVEQPAPTTSGISTNVTSRPRRLKD 62
Query: 170 VRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAA 229
V ++++ +P+ EV RVLGGG+V GSLVLIGGDPGVGKSTLLLQ+
Sbjct: 63 VSADDIHR------IHVPMP-----EVNRVLGGGIVSGSLVLIGGDPGVGKSTLLLQLCC 111
Query: 230 IIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSP 289
++ D S V+YVSGEES+EQI RA R+ + L+ S T +E I+ ++ SP
Sbjct: 112 LLCDQL-----STVLYVSGEESIEQIRLRASRLGRIPDNLWAVSETSLEAILNLIEEQSP 166
Query: 290 RALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPR 349
+IIDSIQT+Y + +AG + QV++CT AL+ AK NIP+ + GHVTK G IAGP+
Sbjct: 167 SLVIIDSIQTIYSENIESAAGSVSQVRDCTMALMLTAKSRNIPMFIVGHVTKEGAIAGPK 226
Query: 350 VLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQ 409
VLEHIVD VLY+EG++ YRLLR+ KNR+GST+E+GVFEM+Q GL V NPS++FLSE+
Sbjct: 227 VLEHIVDTVLYLEGDRAHQYRLLRAAKNRYGSTNEVGVFEMTQEGLIDVPNPSEVFLSER 286
Query: 410 HSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGST--VSRHVNGIQASRADMIISVLMKQ 467
D+ G ++AV+++GSR L+E+QAL + T R NG+ +R ++I+VL K+
Sbjct: 287 PEDT---VGSSIAVLLEGSRPLLVELQALAIHNPTGIPRRTSNGLDYNRLLLLIAVLTKR 343
Query: 468 AGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRM 527
GLKL + I++NVV G+ L E + DLAVA AI SS L P+ F+GE+GL GELR
Sbjct: 344 VGLKLADQDIYVNVVGGLRLDEPSSDLAVAVAIASSALNRPVREDTIFVGEVGLSGELRS 403
Query: 528 VSRMEKRVSTVAKLGYRKCI---VPKSAEKSLATLGFEQMEFIGCKNLKEVINVVFTTP 583
V +++R+S A LG+++ + V K+A+K ++ + K L E I P
Sbjct: 404 VPNIDRRISEAASLGFKRAVCAPVKKNAQK------INSIQIVQAKTLAEAIGKSLYPP 456
>gi|445118737|ref|ZP_21379067.1| DNA repair protein RadA [Prevotella nigrescens F0103]
gi|444839545|gb|ELX66606.1| DNA repair protein RadA [Prevotella nigrescens F0103]
Length = 459
Score = 338 bits (867), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 194/458 (42%), Positives = 274/458 (59%), Gaps = 38/458 (8%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRY----SAGESDEGPVVQRTW------LP 161
++ +VC +CG +W G C C T K+ G S +V T+ +P
Sbjct: 4 DKIAYVCDNCGQESAKWIGRCPNCGQWNTFKQIRIAPDVGVSSAKTLVSHTFGAMKQNVP 63
Query: 162 QKPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKS 221
Q EV + V+ MK +E+ RVLGGGLV GS+VLIGG+PG+GKS
Sbjct: 64 QALREVSSTEEIRVD--MKD------------SELNRVLGGGLVVGSMVLIGGEPGIGKS 109
Query: 222 TLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMM-IATEELFLYSSTDIEDI 280
TL LQ L V+YVSGEES +QI RA R+ E + + S T IE I
Sbjct: 110 TLTLQTL--------LSSDRRVLYVSGEESPQQIKMRALRISDTIPENIVILSETSIEKI 161
Query: 281 VEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVT 340
++ + P L+IDSIQTV VA SAG + Q++E +ALL+ AK ++IPV+L GH+
Sbjct: 162 FNSIKEVKPELLVIDSIQTVATETVASSAGSISQIRESAAALLQLAKSSDIPVILIGHIN 221
Query: 341 KSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSN 400
K G IAGP+VLEHIVD VL EG++ YR+LRS+KNRFGST ELG++EM Q GL+ VSN
Sbjct: 222 KEGSIAGPKVLEHIVDTVLQFEGDQHYMYRILRSIKNRFGSTSELGIYEMRQDGLRPVSN 281
Query: 401 PSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRAD 458
PS++ L++ D L+G+A++ ++G R FL+E QAL S + T R G R +
Sbjct: 282 PSELLLTDTPGD---LSGVAISSAIEGVRPFLVETQALVSSAAYGTPQRSTTGFDQRRLN 338
Query: 459 MIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGE 518
M+++VL K+ G KL + +FLN+ G+ +T+ A DL+V AA+ SS ++ PI G GE
Sbjct: 339 MLLAVLEKRVGFKLMQKDVFLNIAGGLRITDMAMDLSVIAAVLSSNVDTPIEAGWCMAGE 398
Query: 519 IGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSL 556
+GL GE+R V+R+E+R++ KLG+ I+PK+ + L
Sbjct: 399 VGLSGEVRPVNRIEQRIAEAEKLGFSNIIIPKNNAQGL 436
>gi|1314298|gb|AAC44447.1| ORF5; putative Sms protein; similar to Sms proteins from
Haemophilus influenzae and Escherichia coli [Listeria
monocytogenes]
Length = 452
Score = 338 bits (867), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 185/448 (41%), Positives = 269/448 (60%), Gaps = 23/448 (5%)
Query: 109 GKANRTN-WVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEV 167
KA RT +VC CGY +W G C C M T P K +
Sbjct: 2 AKAKRTTKFVCQACGYESAKWMGKCPNCNEWNQMVEALEPSKKSRSAFNHTGEPSKATPI 61
Query: 168 QPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQM 227
+ ++ K+++ +P E+ RVLGGG+VPGS+VL+GGDPG+GKSTLLLQ+
Sbjct: 62 TQI----ASETEKRVETNMP-------ELNRVLGGGVVPGSMVLVGGDPGIGKSTLLLQV 110
Query: 228 AAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPL 287
+A + + V+Y+SGEES++Q RA+R+ ++ + L++Y+ T++E + E + +
Sbjct: 111 SAQLTLTN-----KKVLYISGEESIKQTKLRAERLQVSGDNLYVYAETNLEAVQETIDFV 165
Query: 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAG 347
P ++IDSIQTVY V +AG + QV+ECT+ L+R AK NI + + GHVTK G IAG
Sbjct: 166 KPDFVVIDSIQTVYHPDVTSAAGSVSQVRECTATLMRIAKMQNIAIFIVGHVTKEGAIAG 225
Query: 348 PRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLS 407
PR+LEH+VD VLY EGE+ +YR+LR+VKNRFGST+E+G+FEM +GL V+NPS++FL
Sbjct: 226 PRLLEHMVDTVLYFEGERHHAYRILRAVKNRFGSTNEMGIFEMRDVGLVEVANPSEVFLE 285
Query: 408 EQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLM 465
E+ E +G V + S A C + R GI ++ +I++VL
Sbjct: 286 ERL---EGASGSTVVALWKNSPRPCGNTSA-CFANMFGNAKRMATGIDYNKVSLIMAVLE 341
Query: 466 KQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGEL 525
K+ GL LQ +L GV L E A DLAVA ++ SS+ + P + FIGE+GL GE+
Sbjct: 342 KRVGLMLQNQDAYLKAAGGVKLDEPAVDLAVAVSVASSYRDKPTRSTDCFIGELGLTGEI 401
Query: 526 RMVSRMEKRVSTVAKLGYRKCIVPKSAE 553
R V+R+E+RV AKLG+++ +PK+ E
Sbjct: 402 RSVARIEQRVQEAAKLGFKRISIPKNNE 429
>gi|309803782|ref|ZP_07697868.1| DNA repair protein RadA [Lactobacillus iners LactinV 11V1-d]
gi|308164191|gb|EFO66452.1| DNA repair protein RadA [Lactobacillus iners LactinV 11V1-d]
Length = 459
Score = 338 bits (867), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 190/471 (40%), Positives = 274/471 (58%), Gaps = 18/471 (3%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T + C +C Y + G C C + +++ + + + L +P +L
Sbjct: 5 KTQYRCKNCDYVSASYLGRCPNCGAWNQLEKETEVAKTTSNRLTASRLITAIGNNEPKKL 64
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
E++ KQ+ P S E+ RVLGGG+VPGSLVL+GGDPG+GKSTL+LQ+ IA
Sbjct: 65 SEIDIK-KQIRITTPFS-----ELNRVLGGGIVPGSLVLVGGDPGIGKSTLMLQIMGSIA 118
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+ H V+YVSGEES QI RA+R+ I+ EL LYS T++E+I E++ L P L
Sbjct: 119 NAHK------VLYVSGEESASQIKMRAERLHISDTELLLYSETNMENIREQIVDLKPEFL 172
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
+IDSIQT+ G QV+E T+ LL+ AK I V + GHVTK G IAGP++LE
Sbjct: 173 VIDSIQTMNEPSQDSMVGSATQVREVTAELLKIAKIDKITVFVIGHVTKEGAIAGPKILE 232
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EG+K SYR+LRSVKNRFG+T+E+G+FEM + GL V+NPS +FL E+ +
Sbjct: 233 HMVDTVLYFEGDKHHSYRILRSVKNRFGATNEIGMFEMKEEGLSEVTNPSAVFLDERLPN 292
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMKQAGL 470
S G A+ V ++G+R L +IQAL + R +G+ +R ++++VL K+ L
Sbjct: 293 S---TGSAIVVSLEGTRPILADIQALVTPTAFGYAKRTTSGLDYNRVALLLAVLEKRGNL 349
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ FL G+ L E A DLA+ A+ SS+ I F+GE+GL GE+R ++
Sbjct: 350 MLQNQDAFLTATGGIKLNEPAIDLAICMAVASSYKNKEIAVTDCFVGEVGLTGEIRRINN 409
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVFT 581
+E RV G+++ VPK S +E +G +L E + + FT
Sbjct: 410 IEARVKEATTRGFKRIFVPK-YNVSAKLQSHTTIEIVGVISLMEALKIEFT 459
>gi|340351044|ref|ZP_08674012.1| DNA repair protein RadA [Prevotella nigrescens ATCC 33563]
gi|339606662|gb|EGQ11629.1| DNA repair protein RadA [Prevotella nigrescens ATCC 33563]
Length = 459
Score = 338 bits (867), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 194/458 (42%), Positives = 274/458 (59%), Gaps = 38/458 (8%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRY----SAGESDEGPVVQRTW------LP 161
++ +VC +CG +W G C C T K+ G S +V T+ +P
Sbjct: 4 DKIAYVCDNCGQESAKWIGRCPNCGQWNTFKQIRIAPDVGVSSAKTLVSHTFGAMKQNVP 63
Query: 162 QKPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKS 221
Q EV + V+ MK +E+ RVLGGGLV GS+VLIGG+PG+GKS
Sbjct: 64 QALREVSSTEEIRVD--MKD------------SELNRVLGGGLVVGSMVLIGGEPGIGKS 109
Query: 222 TLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMM-IATEELFLYSSTDIEDI 280
TL LQ L V+YVSGEES +QI RA R+ E + + S T IE I
Sbjct: 110 TLTLQTL--------LSSDRRVLYVSGEESPQQIKMRALRISDTIPENIVILSETSIEKI 161
Query: 281 VEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVT 340
++ + P L+IDSIQTV VA SAG + Q++E +ALL+ AK ++IPV+L GH+
Sbjct: 162 FNSIKEVKPELLVIDSIQTVATETVASSAGSISQIRESAAALLQLAKSSDIPVILIGHIN 221
Query: 341 KSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSN 400
K G IAGP+VLEHIVD VL EG++ YR+LRS+KNRFGST ELG++EM Q GL+ VSN
Sbjct: 222 KEGSIAGPKVLEHIVDTVLQFEGDQHYMYRILRSIKNRFGSTSELGIYEMRQDGLRPVSN 281
Query: 401 PSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRAD 458
PS++ L++ D L+G+A++ ++G R FL+E QAL S + T R G R +
Sbjct: 282 PSELLLTDTPGD---LSGVAISSAIEGVRPFLVETQALVSSAAYGTPQRSATGFDQRRLN 338
Query: 459 MIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGE 518
M+++VL K+ G KL + +FLN+ G+ +T+ A DL+V AA+ SS ++ PI G GE
Sbjct: 339 MLLAVLEKRVGFKLMQKDVFLNIAGGLRITDMAMDLSVIAAVLSSNVDTPIEAGWCMAGE 398
Query: 519 IGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSL 556
+GL GE+R V+R+E+R++ KLG+ I+PK+ + L
Sbjct: 399 VGLSGEVRPVNRIEQRIAEAEKLGFSNIIIPKNNAQGL 436
>gi|189485189|ref|YP_001956130.1| DNA repair protein RadA homolog [uncultured Termite group 1
bacterium phylotype Rs-D17]
gi|170287148|dbj|BAG13669.1| DNA repair protein RadA homolog [uncultured Termite group 1
bacterium phylotype Rs-D17]
Length = 455
Score = 338 bits (867), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 185/471 (39%), Positives = 285/471 (60%), Gaps = 26/471 (5%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTM--KRYSAGESDEGPVVQRTWLPQKPEEV 167
K +T ++C CGY QW G C +C + + +++S Q T + ++
Sbjct: 2 KKQKTRFLCQHCGYESVQWLGKCPSCGAWNSFAEEKFSLPVRTGSLSRQLTGFSSEVLKL 61
Query: 168 QPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQM 227
+ + + + ++ + E ++GGG+VPGSL+L+GG PG+GKSTL+L +
Sbjct: 62 KDISVKDFSRYQTAI-----------KEFDNMIGGGIVPGSLILLGGAPGIGKSTLMLHI 110
Query: 228 AAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPL 287
+ L + V+Y+SGEES+ Q+ RA+R+ + + +FL S T++++I++ V +
Sbjct: 111 S------DSLSDRGTVLYISGEESLSQVKARAERLKVKKDNIFLASETNLKNIIDAVNKI 164
Query: 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAG 347
P+ L+IDSIQT Y ++ + G + QV+E + LLR AK +I V L GHVTK GD+AG
Sbjct: 165 DPKFLVIDSIQTTYHPDLSSAPGTVGQVRETAAELLRVAKSKSIAVFLLGHVTKEGDLAG 224
Query: 348 PRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLS 407
PRVLEHIVD VLY E E+ +YR+LR+ KNRFG T E+G+FEM GL VSNPS IFL
Sbjct: 225 PRVLEHIVDTVLYFENERRQTYRILRAYKNRFGPTSEIGIFEMDSSGLSEVSNPSLIFLG 284
Query: 408 EQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLM 465
E+ +++ AG V V M+G+R L+E+QAL + R V+G A+R ++I+VL
Sbjct: 285 ERVAEA---AGNTVTVAMEGTRPILLEVQALTARTTFGIPRRMVSGYDANRITILIAVLE 341
Query: 466 KQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGEL 525
K+ L L+ +F+N+ GV + ET+ DLAVA AI S+ F P I GE+GL GE+
Sbjct: 342 KRLNLPLEMQDVFINIAGGVKIKETSADLAVACAIMSANSGFICPKDIIVFGEVGLAGEV 401
Query: 526 RMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVI 576
R V+ +R+S KLG++K I+PKS K+L+ G +++ +G + L+ +
Sbjct: 402 RSVTFTAERLSEAEKLGFKKAIIPKSNLKNLSYKG--KIDVLGTETLRSAV 450
>gi|386582989|ref|YP_006079393.1| DNA repair protein RadA [Streptococcus suis SS12]
gi|353735135|gb|AER16145.1| DNA repair protein RadA [Streptococcus suis SS12]
Length = 455
Score = 338 bits (867), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 189/470 (40%), Positives = 277/470 (58%), Gaps = 24/470 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T +VC C Y ++ G C C S + + V T +P ++ V
Sbjct: 7 KTTFVCQSCEYHSPKYLGRCPNCGSWSSFVEEVEVAEVKNERVSLTGEKTRPMKLNEVSS 66
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
++V + ++ E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ ++
Sbjct: 67 IQVARTKTNME-----------EFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSIQLS 115
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+ V+YVSGEES +QI RA+R+ E +LY+ T+++ I +++ + P L
Sbjct: 116 TI------GTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSIRTEIEKIKPDFL 169
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQT+ ++ G + QV+E T+ L++ AK NI + GH+TK G +AGPR LE
Sbjct: 170 IIDSIQTIMSPDISSVQGSVSQVREVTNELMQIAKTNNIATFIVGHMTKEGTLAGPRTLE 229
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS++FL E+
Sbjct: 230 HMVDTVLYFEGERQHTFRILRAVKNRFGSTNEIGIFEMQSQGLVEVLNPSEVFLEERLDG 289
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
+ G A+ V M+G+R L E+QAL R G+ +RA +I++VL K+AGL
Sbjct: 290 A---TGSAIVVTMEGTRPILAEVQALVTPTMFGNAKRTTTGLDFNRASLIMAVLEKRAGL 346
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ +L GV L E A DLAVA A+ SS+ + P F+GEIGL GE+R V+R
Sbjct: 347 LLQNQDAYLKSAGGVKLDEPAIDLAVAVALASSYKDKPTNPQECFMGEIGLTGEIRRVNR 406
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+E+R++ AKLG+ K PK++ + +++ IG + EV+ VF
Sbjct: 407 IEQRINEAAKLGFTKVYAPKNSLTGIKVP--KEITVIGVTTIGEVLQKVF 454
>gi|134298060|ref|YP_001111556.1| DNA repair protein RadA [Desulfotomaculum reducens MI-1]
gi|134050760|gb|ABO48731.1| DNA repair protein RadA [Desulfotomaculum reducens MI-1]
Length = 449
Score = 338 bits (867), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 199/472 (42%), Positives = 295/472 (62%), Gaps = 36/472 (7%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTM-KRYSAGESDEGPVVQRTWLPQKPEEVQPV 170
N+T + C +CG+ +W G C C T+ + +A ES + + T P V +
Sbjct: 3 NKTTYACQNCGHQTARWMGRCPGCGEWNTLVEERTAVESKKLRGISGTG----PVPVTEI 58
Query: 171 RLLEVNK---GMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQM 227
+ E + G+ +LD RVLGGGLVPGSLVL+GGDPG+GKSTLLLQ
Sbjct: 59 IITEEERYATGLVELD--------------RVLGGGLVPGSLVLVGGDPGIGKSTLLLQA 104
Query: 228 AAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPL 287
A+ IA V+YVSGEES QI RA+R+ L+L + TD+ + ++
Sbjct: 105 ASAIA-----AGTRKVLYVSGEESARQIKMRAERIGALHPNLYLMAETDMSVVERVIKET 159
Query: 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAG 347
+ A+++DSIQTVY ++ + G + QV+ECT L++ AK + +P+ + GHVTK G +AG
Sbjct: 160 TFSAVVVDSIQTVYQPEISSAPGSVSQVRECTGMLMKLAKGSGVPIFVVGHVTKEGTLAG 219
Query: 348 PRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLS 407
PRVLEHIVD VLY EG++ +YR+LR+VKNRFGST+ELG+FEM GL VSNPS++F++
Sbjct: 220 PRVLEHIVDTVLYFEGDRHQAYRILRTVKNRFGSTNELGIFEMRGAGLVEVSNPSELFMN 279
Query: 408 EQHSDSEFLAGLAVAVIMDGSRSFLIEIQAL-CVSG-STVSRHVNGIQASRADMIISVLM 465
++ E +AG ++ ++G+R L+E+QAL C SG + R +G+ +R +I++VL
Sbjct: 280 QR---PENVAGSSIVPSLEGTRPLLVELQALVCASGFGSPRRMTSGVDYNRVALIMAVLE 336
Query: 466 KQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGEL 525
++ GL+L +++ V GV L E A DLA+A AI SSF E P+ + +GE+GL GE+
Sbjct: 337 RRVGLRLSSYDAYVSAVGGVKLDEPAADLAIALAIASSFKEQPVQEQVVLVGEVGLTGEV 396
Query: 526 RMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVIN 577
R V+ MEKR+ AKLG++ CI PK +K ++G +E+IG ++L+E +
Sbjct: 397 RAVAGMEKRLQEAAKLGFKVCIGPK--DKQSQSMGI--IEYIGVQSLQEAVE 444
>gi|241759837|ref|ZP_04757937.1| DNA repair protein RadA [Neisseria flavescens SK114]
gi|241319845|gb|EER56241.1| DNA repair protein RadA [Neisseria flavescens SK114]
Length = 475
Score = 338 bits (867), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 196/477 (41%), Positives = 281/477 (58%), Gaps = 32/477 (6%)
Query: 109 GKANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKP--EE 166
KA +T + CS+CG T +W G C C T++ A + Q +W +
Sbjct: 19 AKAPKTIYQCSECGGTSPKWQGKCPHCGEWNTLQESLAAPEPKNARFQ-SWAADTSTVQS 77
Query: 167 VQPVRLLEVNK---GMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTL 223
+ V EV + GM +LD RVLGGGLV G+++L+GGDPG+GKSTL
Sbjct: 78 LSTVTATEVPRNPTGMGELD--------------RVLGGGLVDGAVILLGGDPGIGKSTL 123
Query: 224 LLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEK 283
LLQ A +A + V+YVSGEES +Q+ RA R+ + TE + L + +E I
Sbjct: 124 LLQTIAKMA------QSRKVLYVSGEESAQQVALRAQRLELPTEGVNLLAEIRMEAIQTA 177
Query: 284 VQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSG 343
++ P ++IDSIQT+Y + + G + QV+EC + L R AK+ +I ++L GHVTK G
Sbjct: 178 LKQHQPEVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRMAKQMSIAMILVGHVTKDG 237
Query: 344 DIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSK 403
IAGPRVLEH+VD VLY EG++ S+YR++R++KNRFG+ +ELGVF M++ GL+ VSNPS
Sbjct: 238 AIAGPRVLEHMVDTVLYFEGDQHSNYRMIRAIKNRFGAANELGVFAMTENGLKGVSNPSA 297
Query: 404 IFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMII 461
IFL+ D+ G V V +GSR L+EIQAL G T R G++ +R M++
Sbjct: 298 IFLASYRDDT---PGSCVLVTQEGSRPLLVEIQALVDDAHGFTPKRLTVGLEQNRLAMLL 354
Query: 462 SVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGL 521
+VL + G+ + +FLN V GV + E A DLAV A+ SSF P+P GEIGL
Sbjct: 355 AVLNRHGGIACFDQDVFLNAVGGVKIGEPAADLAVILAMLSSFRNRPMPEKTVVFGEIGL 414
Query: 522 GGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINV 578
GE+R V+R ++R+ KLG+++ IVPK+ A F ++ G +L+E I+V
Sbjct: 415 SGEVRPVARGQERLKEAEKLGFKRAIVPKANMPRNAK-EFPNLKIYGVSSLQEAIDV 470
>gi|417015234|ref|ZP_11946890.1| DNA repair protein RadA [Lactobacillus helveticus MTCC 5463]
gi|112148587|gb|ABI13577.1| putative ATP-dependent serine protease [Lactobacillus helveticus
CNRZ32]
gi|328462971|gb|EGF34779.1| DNA repair protein RadA [Lactobacillus helveticus MTCC 5463]
Length = 458
Score = 338 bits (867), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 190/471 (40%), Positives = 277/471 (58%), Gaps = 21/471 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T + C CGY + G C C + ++ + + L QK +PV L
Sbjct: 5 KTQYKCRSCGYISASYLGRCPNCGAWNQFEKETEEVQKRSTKATASRLIQKTGLNEPVHL 64
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
+K + + RIP E+ RVLGGG+VPGSLVLIGGDPG+GKSTL+L + +
Sbjct: 65 ---DKIKAEKEERIPTKS---EELNRVLGGGIVPGSLVLIGGDPGIGKSTLMLHIMS--- 115
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
DL E V+YVSGEES QI RADR+ + + LY TD+ DI E++ + P +
Sbjct: 116 ---DLAEKYKVLYVSGEESANQIKLRADRLGVGQSNMLLYPETDMHDIREQINDVKPDFV 172
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
+IDSIQT+ + G QV+E TS L++ AK I V + GHVTK G IAGP++LE
Sbjct: 173 VIDSIQTMNEPSLDSMTGSASQVREVTSELMKIAKMDAITVFVIGHVTKEGAIAGPKILE 232
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EG++ +YR+L SVKNRFG+ +E+G+FEM GL+ V+NPS IFL ++ +
Sbjct: 233 HMVDTVLYFEGDEHHTYRILHSVKNRFGAANEIGMFEMKNEGLREVTNPSSIFLDQRLPN 292
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMKQAGL 470
S G AV V ++G+R L EIQAL + R +GI ++A ++++VL K+ L
Sbjct: 293 S---TGSAVVVSLEGTRPLLAEIQALVTPTAFGYAKRTTSGISFNKASLLLAVLEKRGNL 349
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ I+L G+ L E A DLA+A ++ SS+ + I F+GE+GL GE+R V +
Sbjct: 350 MLQNQDIYLTATGGIKLNEPAIDLAIAMSVASSYTDKEISPTDCFVGEVGLTGEVRRVDK 409
Query: 531 MEKRVSTVAKLGYRKCIVPK-SAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+E RV AK+G+++ +PK + +SL G +E I ++ + + +VF
Sbjct: 410 IEARVKEAAKVGFKRIFIPKHNMYQSLTENG---IEVIPVASIPQALELVF 457
>gi|119713698|gb|ABL97748.1| DNA repair protein RadA [uncultured marine bacterium EB0_41B09]
Length = 456
Score = 338 bits (867), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 190/456 (41%), Positives = 268/456 (58%), Gaps = 25/456 (5%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVR 171
++T + C +CG T +W G C C T+ DE + +T P P
Sbjct: 4 SKTAYQCRECGGTSSKWQGQCPHCFVWNTL--------DETTIESKT-----PSRFAP-- 48
Query: 172 LLEVNKGMKQLDWR---IPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMA 228
L + N+ K D + IP +E RVLGGG VPG ++LIGGDPG+GKST+L+Q
Sbjct: 49 LSKTNELTKLDDVKALSIPKRKTNISEFDRVLGGGFVPGGVILIGGDPGIGKSTILIQAL 108
Query: 229 AIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLS 288
+ I D + V+YVSGEES EQI RA R+ + ++ + S ++E IV VQ
Sbjct: 109 SKIT--QDPKDNCNVIYVSGEESKEQIAMRAKRLELEVSDISILSEINLEKIVSVVQKTK 166
Query: 289 PRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGP 348
P ++IDSIQT+Y + + G + QV+EC++ L R AK+ +I +LL GHVTK G +AGP
Sbjct: 167 PNVVVIDSIQTIYSEEMTSAPGSVTQVRECSAQLTRIAKQFDITMLLVGHVTKEGTLAGP 226
Query: 349 RVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSE 408
RVLEHIVD VLY EG+ SS+R++R+ KNRFG+ +ELGVF M++ GL+ V+NPS +FLS
Sbjct: 227 RVLEHIVDTVLYFEGDPSSSFRMIRAFKNRFGAVNELGVFAMTEKGLKEVTNPSALFLSH 286
Query: 409 QHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVLMK 466
H + + G + I +GSR LIEIQAL G + R G+ +R M+++ L +
Sbjct: 287 HHKE---VNGSCITCIQEGSRPMLIEIQALVDNAHGHSPKRLSVGLDQNRLAMLLASLNR 343
Query: 467 QAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELR 526
AG+ + +F+N V GV +TE DLA+ AI SSF P+ GEIGL GE+R
Sbjct: 344 HAGIACFDQDVFVNAVGGVKITEPGVDLAILCAIVSSFTTQPLDQKTVIFGEIGLAGEVR 403
Query: 527 MVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFE 562
V R ++R+ AKLG+ K I+PK+ + G E
Sbjct: 404 PVQRGQERLKEAAKLGFTKAIIPKANQAKQKINGIE 439
>gi|288799904|ref|ZP_06405363.1| DNA repair protein RadA [Prevotella sp. oral taxon 299 str. F0039]
gi|288333152|gb|EFC71631.1| DNA repair protein RadA [Prevotella sp. oral taxon 299 str. F0039]
Length = 469
Score = 338 bits (867), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 185/482 (38%), Positives = 283/482 (58%), Gaps = 30/482 (6%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQK----PEEV 167
++ +VCS CG+ +W G C AC T K + G + + + T +E
Sbjct: 4 DKIAYVCSTCGFDSAKWIGKCPACGEWNTFKEFRLGSNSKKATSRSTIASSTHHLASQEN 63
Query: 168 QPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQM 227
+P+RL E++ P + E+ RVLGGGLV GS+ L+GG+PG+GKSTL +Q
Sbjct: 64 KPLRLNEISGS------EAPRISMNDGELNRVLGGGLVRGSITLLGGEPGIGKSTLTMQT 117
Query: 228 AAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMM-------IATEELFLYSSTDIEDI 280
++ + V+YVSGEES Q+ RA+R+ I + L + T +E I
Sbjct: 118 LLSLSHL-------KVLYVSGEESAYQLKMRAERLSKGLKETSIDHDNLIILCETSLETI 170
Query: 281 VEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVT 340
E++ + P +IIDSIQT+ V S G + QV+EC+S LLRFAK TN PVLL GH+
Sbjct: 171 FEQIINIQPELIIIDSIQTISTEQVESSPGSITQVRECSSQLLRFAKTTNTPVLLIGHIN 230
Query: 341 KSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSN 400
K G AGP+VLEHIVD V+ EG++ YR+LR+ KNRFGST ELG++EM GL+ V N
Sbjct: 231 KEGTFAGPKVLEHIVDTVIMFEGDQHHIYRILRATKNRFGSTSELGIYEMRDTGLRQVEN 290
Query: 401 PSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRAD 458
PS++ LS+ D L+G+A++ ++G+R ++E QAL + + T R G + R +
Sbjct: 291 PSELLLSQ---DLSGLSGVAISCAIEGARPLMLETQALVSTAAYGTPQRSATGFEQRRLN 347
Query: 459 MIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGE 518
M+++VL K+ G KL + +FLN+ G+ +T+ A DL+V ++ SS ++ PI G GE
Sbjct: 348 MLLAVLEKRVGFKLMQKDVFLNIAGGLRVTDLAMDLSVIVSVLSSNVDTPIDVGWCMAGE 407
Query: 519 IGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINV 578
+GL GE+R VSR+E+R+S KLG+ I+P++ + + ++ K ++E + +
Sbjct: 408 VGLSGEVRTVSRIEQRISEAEKLGFTHMIIPQNNLQGFDVKKY-SIQLHPVKKVEEALRI 466
Query: 579 VF 580
+F
Sbjct: 467 LF 468
>gi|357039779|ref|ZP_09101571.1| DNA repair protein RadA [Desulfotomaculum gibsoniae DSM 7213]
gi|355357585|gb|EHG05358.1| DNA repair protein RadA [Desulfotomaculum gibsoniae DSM 7213]
Length = 450
Score = 338 bits (867), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 192/472 (40%), Positives = 286/472 (60%), Gaps = 26/472 (5%)
Query: 111 ANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPV 170
A +T + C CG+ +W G C C G Y +E V R E P
Sbjct: 3 AKKTGYYCQQCGHFTSRWMGRCSGC---GGWNTYV----EEVAVPARHGRASGHREEDPR 55
Query: 171 RLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAI 230
L+EV +D +G+ E+ RVLGGG+VPGSL+L+GGDPG+GKSTLLLQ+A
Sbjct: 56 PLIEV----PLMDGERRSTGM--AELNRVLGGGVVPGSLILLGGDPGIGKSTLLLQVAGA 109
Query: 231 IADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPR 290
+ V+YVSGEES Q+ RA+R+ + + EL++Y T++E + E++ ++P
Sbjct: 110 VGSAGHR-----VLYVSGEESPHQLKLRAERLGVNSTELYVYPQTNLETVEEQLARVNPS 164
Query: 291 ALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRV 350
+++DSIQT++L ++ + G + QV+ECT+ L++ AKK ++ + + GHVTK G IAGPRV
Sbjct: 165 LVVVDSIQTMFLSDISSAPGSVSQVRECTARLMQLAKKQSVSIFVVGHVTKEGMIAGPRV 224
Query: 351 LEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQH 410
+EH+VD VLY EGE+ ++R+LR VKNRFGST+E+GVFEMS GL+ V+NPS FL +
Sbjct: 225 MEHMVDVVLYFEGERHQTFRILRGVKNRFGSTNEIGVFEMSGTGLREVANPSSFFLMDHV 284
Query: 411 SDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMKQA 468
+ +AG V ++G+R L+EIQ L S T R G+ +R +I++VL K+
Sbjct: 285 CRN--VAGTVVVPTLEGTRPLLVEIQGLVCPTSFGTPRRMTAGVDHNRVALIMAVLEKRL 342
Query: 469 GLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMV 528
GL L ++NVV GV + E A DL +A A+ SSF + I + +GE+GL GE+R V
Sbjct: 343 GLMLGNCDAYVNVVGGVRIDEPAADLGIAVALASSFRDRAIDGSMVVMGELGLTGEIRPV 402
Query: 529 SRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+ ++KR+ A+LG+ CIVP+ +K L G +++ L E ++VF
Sbjct: 403 TAVDKRIREAAQLGFGCCIVPR--QKGLPKAG--ELDIKEAATLAEAFDLVF 450
>gi|124024918|ref|YP_001014034.1| DNA repair protein RadA [Prochlorococcus marinus str. NATL1A]
gi|123959986|gb|ABM74769.1| putative DNA repair protein RadA [Prochlorococcus marinus str.
NATL1A]
Length = 459
Score = 338 bits (867), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 186/442 (42%), Positives = 270/442 (61%), Gaps = 19/442 (4%)
Query: 116 WVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRLLEV 175
+VC CG Q++G C C ++ + + + + P+E P R +
Sbjct: 8 YVCQSCGAQTRQFFGRCNNCGEWNSIIEEKINQKSDKSIYTKI---NSPKEKSPYRSELI 64
Query: 176 NKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVH 235
++ QL RI SG E+ RVLGGGLVPGSLVLIGGDPG+GKSTL+LQ A
Sbjct: 65 SQTKNQLIERIS-SGY--KELDRVLGGGLVPGSLVLIGGDPGIGKSTLILQSAT------ 115
Query: 236 DLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIID 295
++ V+YV+ EES +Q+ R +R+ A L L + TD+E +++++ L P +ID
Sbjct: 116 EMAHHRSVLYVAAEESAQQVKLRWNRIEDAESNLHLLAETDLEMVIKELDHLKPEVAVID 175
Query: 296 SIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIV 355
SIQ ++ + ++ S G + QV+EC++AL + AK+ NI +L+ GHVTK G +AGP+VLEH+V
Sbjct: 176 SIQALHDQNLSSSPGSVAQVRECSAALQQIAKRQNISLLIIGHVTKDGMLAGPKVLEHLV 235
Query: 356 DAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEF 415
DAVL EG++F+S+RLLR VKNRFG+T ELGVFEM GL V NPS++FLS+ +
Sbjct: 236 DAVLTFEGDRFASHRLLRGVKNRFGATSELGVFEMQADGLSEVPNPSELFLSKTSA---- 291
Query: 416 LAGLAVAVIMDGSRSFLIEIQALCVSGSTVS--RHVNGIQASRADMIISVLMKQAGLKLQ 473
G++ V +G+R I+IQAL S S R GI+ +R I++VL K L L
Sbjct: 292 -PGISTIVTCEGTRPLAIDIQALLNPTSYASPRRTTTGIEINRLHQILAVLEKNMNLSLS 350
Query: 474 ENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEK 533
+L V G+ + E DL +AAAI SSF + + G+ FIGEIGL G+LR+V +M++
Sbjct: 351 RYDCYLAVAGGLEVEEPGADLGIAAAIVSSFKDIELEEGVVFIGEIGLAGQLRLVRQMQQ 410
Query: 534 RVSTVAKLGYRKCIVPKSAEKS 555
R++ V +LGY+ I+P + S
Sbjct: 411 RINEVIRLGYKTLIIPDGIDTS 432
>gi|329957454|ref|ZP_08297929.1| DNA repair protein RadA [Bacteroides clarus YIT 12056]
gi|328522331|gb|EGF49440.1| DNA repair protein RadA [Bacteroides clarus YIT 12056]
Length = 455
Score = 338 bits (866), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 193/470 (41%), Positives = 281/470 (59%), Gaps = 22/470 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T +VCS+CG +W G C +C G Y + V +R + + +PV L
Sbjct: 5 KTVYVCSNCGQESPKWVGKCPSC---GEWNTYVEEIVRKEAVNKRPVSGIETAKAKPVTL 61
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
E+ + P L E+ RVLGGGLV GSLVLIGG+PG+GKSTL+LQ I
Sbjct: 62 NEIAADDE------PRIDLHDAELNRVLGGGLVQGSLVLIGGEPGIGKSTLVLQTILRIP 115
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+ ++Y+SGEES Q+ RADR+ + + + T +E I ++ P +
Sbjct: 116 E-------KRILYISGEESARQLKLRADRLSSTSCDCLIVCETSLEQIYVHIRNTHPDLV 168
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQT+ + S G + QV+EC++++LRFAK+T+ V+L GH+ K G IAGP+VLE
Sbjct: 169 IIDSIQTISTETLESSPGSIAQVRECSASILRFAKETHTAVILIGHINKEGSIAGPKVLE 228
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
HIVD VL EG++ YR+LRS+KNRFGST ELG++EM Q GL+ VSNPS++ LS+ H
Sbjct: 229 HIVDTVLQFEGDQHYMYRILRSIKNRFGSTAELGIYEMRQDGLRQVSNPSELLLSQDH-- 286
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
E ++G+A+A ++G R FLIE QAL S R G R +M+++VL K+ G
Sbjct: 287 -EGMSGIAIASAIEGVRPFLIETQALVSSAVYGNPQRSATGFDIRRMNMLLAVLEKRVGF 345
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
KL + +FLN+ G+ + + A DLAV +AI SS ++ I I GEIGL GE+R V+R
Sbjct: 346 KLAQKDVFLNIAGGLKVNDPAIDLAVISAILSSNMDTAIEPEICMAGEIGLSGEIRPVNR 405
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+E+R+ KLG+++ I+PK + L T ++E I + ++E +F
Sbjct: 406 IEQRIGEAEKLGFKRFILPKYNLQGLNTSKL-KIELIPVRKVEEAFRALF 454
>gi|418034765|ref|ZP_12673234.1| DNA repair protein RadA [Bacillus subtilis subsp. subtilis str.
SC-8]
gi|351468419|gb|EHA28639.1| DNA repair protein RadA [Bacillus subtilis subsp. subtilis str.
SC-8]
gi|407955778|dbj|BAM49018.1| DNA repair protein RadA [Bacillus subtilis BEST7613]
gi|407963049|dbj|BAM56288.1| DNA repair protein RadA [Bacillus subtilis BEST7003]
Length = 426
Score = 338 bits (866), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 182/384 (47%), Positives = 252/384 (65%), Gaps = 12/384 (3%)
Query: 195 EVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQ 254
E RVLGGG+V GSLVLIGGDPG+GKSTLLLQ++A ++ G + V+Y+SGEESV+Q
Sbjct: 47 EFNRVLGGGVVKGSLVLIGGDPGIGKSTLLLQVSAQLS-----GSSNSVLYISGEESVKQ 101
Query: 255 IGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQ 314
RADR+ I L + S TD+E I +Q ++P +++DSIQTVY + + G + Q
Sbjct: 102 TKLRADRLGINNPSLHVLSETDMEYISSAIQEMNPSFVVVDSIQTVYQSDITSAPGSVSQ 161
Query: 315 VKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRS 374
V+ECT+ L++ AK IP+ + GHVTK G IAGPR+LEH+VD VLY EGE+ ++R+LR+
Sbjct: 162 VRECTAELMKIAKTKGIPIFIVGHVTKEGSIAGPRLLEHMVDTVLYFEGERHHTFRILRA 221
Query: 375 VKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIE 434
VKNRFGST+E+G+FEM + GL V NPS+IFL E+ + S AG ++ M+G+R L+E
Sbjct: 222 VKNRFGSTNEMGIFEMREEGLTEVLNPSEIFLEERSAGS---AGSSITASMEGTRPILVE 278
Query: 435 IQALC--VSGSTVSRHVNGIQASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAG 492
IQAL S R GI +R ++++VL K+ GL LQ +L V GV L E A
Sbjct: 279 IQALISPTSFGNPRRMATGIDHNRVSLLMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAI 338
Query: 493 DLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSA 552
DLA+ +I SSF + P FIGE+GL GE+R VSR+E+RV AKLG+++ I+P +
Sbjct: 339 DLAIVISIASSFRDTPPNPADCFIGEVGLTGEVRRVSRIEQRVKEAAKLGFKRMIIPAAN 398
Query: 553 EKSLATLGFEQMEFIGCKNLKEVI 576
+ +E IG N+ E +
Sbjct: 399 LDGWTKP--KGIEVIGVANVAEAL 420
>gi|156741994|ref|YP_001432123.1| DNA repair protein RadA [Roseiflexus castenholzii DSM 13941]
gi|156233322|gb|ABU58105.1| DNA repair protein RadA [Roseiflexus castenholzii DSM 13941]
Length = 464
Score = 338 bits (866), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 200/443 (45%), Positives = 281/443 (63%), Gaps = 20/443 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
RT +VC CG +W G C C + ++ +++ R+ + +PV L
Sbjct: 5 RTVFVCQQCGSQQSRWMGRCPDCGTWDSLVE----QTERRDAASRSRAITSGFQGRPVGL 60
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
+V G R+P+ G E VLGGGLVPGS+VLIGG+PG+GKS+LLLQ+AA A
Sbjct: 61 RDVAIGGFT---RLPV---LGREFVGVLGGGLVPGSVVLIGGEPGIGKSSLLLQVAAHFA 114
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
D P +YVS EESV+QI RA RM + E L +YS T++ I+++V + P+ +
Sbjct: 115 D-----HVGPALYVSAEESVQQIKLRAARMGLEPERLLVYSETNLNAILDQVAAIKPQLV 169
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
++DSIQTVYL ++ +AG + QV+E LLR AK+ IP+ L GHVTK G IAGPRVLE
Sbjct: 170 VVDSIQTVYLEELSSAAGSVSQVREGALRLLRVAKEHAIPMFLVGHVTKEGAIAGPRVLE 229
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
HIVD VLY+EG++F YRLLR VKNRFGSTDE+GVFEM+ GL+ V NPS+ FLSE+ +
Sbjct: 230 HIVDVVLYLEGDRFHQYRLLRGVKNRFGSTDEVGVFEMTAHGLREVPNPSQAFLSERTVN 289
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCV--SGSTVSRHVNGIQASRADMIISVLMKQAGL 470
+ G AVAV M+G+R L+E+QAL +G+ R NG +R M+++VL K+ GL
Sbjct: 290 A---PGSAVAVTMEGTRPILVEVQALTAHSAGAQPRRTANGFDMNRLLMLVAVLTKRVGL 346
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
L +++N+V G+ + E A DLAVA AI SSF + +A +GE+GL GELR +
Sbjct: 347 PLFNQDVYVNIVGGLRIDEPAVDLAVAVAIASSFRNMRVRQDLAMVGEVGLAGELRSAGQ 406
Query: 531 MEKRVSTVAKLGYRKCIVPKSAE 553
+E+R++ + LG+ + P++A
Sbjct: 407 LERRLTEASGLGFTCALCPETAH 429
>gi|384097348|ref|ZP_09998469.1| DNA repair protein RadA [Imtechella halotolerans K1]
gi|383837316|gb|EID76716.1| DNA repair protein RadA [Imtechella halotolerans K1]
Length = 453
Score = 338 bits (866), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 186/468 (39%), Positives = 284/468 (60%), Gaps = 26/468 (5%)
Query: 116 WVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRLLEV 175
+ C CG +W G C AC++ T+ + ++ Q + + + V+P+R+ ++
Sbjct: 8 FFCQSCGTQYAKWQGQCTACKAWNTIVEEIVIKDEKVAWKQSSDVASRA--VRPLRVSDI 65
Query: 176 NKGMK-QLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADV 234
+ + +L+ + E RVLGGG+VPGS+ L+GG+PG+GKSTLLLQ+A +
Sbjct: 66 DSTHEIRLNSK-------NQEFNRVLGGGIVPGSVTLLGGEPGIGKSTLLLQIALFL--- 115
Query: 235 HDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALII 294
P +YVSGEES +QI RA+R+ + ++ + T ++I ++++ L P +II
Sbjct: 116 -----PYKTLYVSGEESQKQIKMRAERIHPTNSDCYILTETKTQNIFKQIKELLPDVVII 170
Query: 295 DSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHI 354
DSIQT++ + S G + Q++ECT+ L++FAK+TN PV+L GH+TK G+IAGP++LEH+
Sbjct: 171 DSIQTLHTDYLEASPGSVSQIRECTAELIKFAKETNTPVILIGHITKDGNIAGPKILEHM 230
Query: 355 VDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSE 414
VD VL EG++ YRLLRS+KNRFGST ELG++EM GL+ V+NPS+I +S+ E
Sbjct: 231 VDTVLQFEGDRNHVYRLLRSLKNRFGSTAELGIYEMQSSGLREVTNPSEILISKTE---E 287
Query: 415 FLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGLKL 472
L+G +A ++G R LIEIQAL + T R G A R +M+++VL K+AG KL
Sbjct: 288 NLSGTTIAATIEGMRPLLIEIQALVSTAVYGTPQRSATGFNAKRLNMLLAVLEKRAGFKL 347
Query: 473 QENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRME 532
+FLN+ G+ + + A DL V AI SS + PI F EIGLGGE+R V R++
Sbjct: 348 ASKDVFLNITGGITVDDPAIDLGVVMAILSSNEDLPIDKTSCFAAEIGLGGEIRPVQRID 407
Query: 533 KRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+R+ KLG+ V K + TL ++ ++EVI++VF
Sbjct: 408 QRILEAEKLGFETIFVSKYNK---ITLKNTVIKIETVAKVEEVISIVF 452
>gi|386727450|ref|YP_006193776.1| DNA repair protein RadA [Paenibacillus mucilaginosus K02]
gi|384094575|gb|AFH66011.1| DNA repair protein RadA [Paenibacillus mucilaginosus K02]
Length = 455
Score = 338 bits (866), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 198/481 (41%), Positives = 277/481 (57%), Gaps = 42/481 (8%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRAC----------ESVGTMKRYSAGESDEGPVVQRTWLP 161
+T + CS+CGY +W G C C E+V + + G S++
Sbjct: 4 TKTKFFCSECGYESPKWLGKCPGCQAWNSFVEEIETVSKSRGFHGGASEKKEKAVSIINI 63
Query: 162 QKPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKS 221
+ EE R++ N+ E+ RVLGGG+VPGSL+L+GGDPG+GKS
Sbjct: 64 ESSEEA---RIITENR-----------------ELNRVLGGGIVPGSLILVGGDPGIGKS 103
Query: 222 TLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIV 281
TLLLQ + + + V+Y+SGEESV Q RADR+ + LF+ S T+ + I
Sbjct: 104 TLLLQTSYELTK-----QECKVLYISGEESVRQTKLRADRLQAISPLLFVLSETNAQFIE 158
Query: 282 EKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTK 341
+ + P ++IDSIQTVY V + G + QV+ECT +R AK I +L GHVTK
Sbjct: 159 AAIDEIRPDFVVIDSIQTVYHPAVESAPGSVSQVRECTGHFMRIAKGKGIATVLVGHVTK 218
Query: 342 SGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNP 401
G IAGPR+LEH+VD VLY EGE+ SYRLLR+VKNRFGST+E+G+FEM ++GL VSNP
Sbjct: 219 EGAIAGPRMLEHMVDCVLYFEGERHHSYRLLRAVKNRFGSTNEIGIFEMQEIGLVEVSNP 278
Query: 402 SKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVS--RHVNGIQASRADM 459
S++FLSE+ ++G V M+G+R L+E+QAL + S R G +R +
Sbjct: 279 SELFLSERPLG---VSGSTVVAAMEGTRPVLVELQALVSQTNFPSPRRMATGYDHNRLSL 335
Query: 460 IISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEI 519
II+VL K+ G+ LQ +LN+ GV L E A DLAVA +I SSF + P IGEI
Sbjct: 336 IIAVLEKRMGMFLQNQDAYLNIAGGVKLDEPAVDLAVAVSIASSFRDQPTQPFDVIIGEI 395
Query: 520 GLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVV 579
GL GE+R VSR+++RV KLG+++ I+P+ + K +E IG + E ++
Sbjct: 396 GLTGEVRGVSRVDQRVREAQKLGFKRIILPQKSLKGWTPPA--GIEIIGVNTVAEALSAA 453
Query: 580 F 580
Sbjct: 454 L 454
>gi|395219347|ref|ZP_10402456.1| DNA repair protein RadA [Pontibacter sp. BAB1700]
gi|394453938|gb|EJF08720.1| DNA repair protein RadA [Pontibacter sp. BAB1700]
Length = 461
Score = 338 bits (866), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 179/456 (39%), Positives = 276/456 (60%), Gaps = 35/456 (7%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTW----------LPQ 162
+T++ C +CG +W G C AC T + P W +
Sbjct: 5 KTSYFCQNCGAQSAKWIGKCPACGEWNTYVEEVVQREELTP--SSVWKVGNTSSSAQVAN 62
Query: 163 KPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKST 222
KP+ + + E + ++ +D E+ RVLGGG+VPGS+VLIGG+PG+GKST
Sbjct: 63 KPKPIADISYQEQQR-IQTVD----------QELNRVLGGGIVPGSMVLIGGEPGIGKST 111
Query: 223 LLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVE 282
L+LQ+A + + V+YVSGEES QI RA+R+ T + F+ + T ++I +
Sbjct: 112 LMLQIALSLTGLR-------VLYVSGEESEHQIKMRAERLNAQTSDCFILTETGTQNIFK 164
Query: 283 KVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKS 342
+++ L P+ LIIDSIQT++ + AG + QV+ECT+ LL+FAK++ PV L GH+TK
Sbjct: 165 QIEQLRPQVLIIDSIQTLHSSFIEAGAGSVSQVRECTAELLKFAKESGTPVFLIGHITKE 224
Query: 343 GDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPS 402
G++AGP++LEH+VD VL EG++ +YR+LR+ KNRFGST ELG++EM GL+ VSNPS
Sbjct: 225 GNLAGPKILEHMVDTVLTFEGDRHMTYRILRTSKNRFGSTSELGIYEMLGTGLREVSNPS 284
Query: 403 KIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMI 460
+I +S++ + +G+A+ ++G+R LIE+Q+L + T R G R +M+
Sbjct: 285 EILISQRE---DAFSGIAIGATLEGNRPLLIEVQSLVTPATYGTPQRTSTGFDGKRLNML 341
Query: 461 ISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIG 520
++VL K+ G +L +FLN+ G+ + + A DLAV A+I SSF + IP+ F E+G
Sbjct: 342 LAVLEKRGGYRLGTQDVFLNIAGGLKVEDPALDLAVCASILSSFEDIAIPSTSCFAAEVG 401
Query: 521 LGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSL 556
LGGE+R V+R+E R++ KLG+R + K +K +
Sbjct: 402 LGGEVRAVNRIENRITEAEKLGFRDIYISKYNKKGV 437
>gi|387773970|ref|ZP_10129250.1| DNA repair protein RadA [Haemophilus parahaemolyticus HK385]
gi|386903057|gb|EIJ67877.1| DNA repair protein RadA [Haemophilus parahaemolyticus HK385]
Length = 459
Score = 338 bits (866), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 190/476 (39%), Positives = 287/476 (60%), Gaps = 28/476 (5%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRAC---ESVGTMKRYSAGESDEGPVVQRTWLPQKPEE 166
K +T +VCSDCG +W G C+ C ++ ++ SA ES + + + +
Sbjct: 3 KTPKTAYVCSDCGAEYSKWMGQCKECYAWNTISEIRLVSAKESKKNDRFS-GYAGETSGK 61
Query: 167 VQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQ 226
VQ + + + + +P NE+ RVLGGG+VPGS +LIGG PG GKSTLLLQ
Sbjct: 62 VQALSEISLQE--------VPRFSSGFNELDRVLGGGVVPGSAILIGGHPGAGKSTLLLQ 113
Query: 227 MAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQP 286
+ L + P +YV+GEES++Q+ RA+R+ + TE L + S T +E I
Sbjct: 114 VMC------GLSKEIPTLYVTGEESLQQVAMRANRLGLPTEHLKMLSETSVEHICNIADQ 167
Query: 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIA 346
P+ ++IDSIQ ++L + S G + QV+EC S L R+AK + +++ GHVTK G +A
Sbjct: 168 EKPQIMVIDSIQVMHLSDIQSSPGSVSQVRECASFLTRYAKTRQVAIIMVGHVTKDGTLA 227
Query: 347 GPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFL 406
GP+VLEH +DA L +EGE S YR LRS KNRFG+ +ELGVF M++ GL+ V NPS IFL
Sbjct: 228 GPKVLEHAIDASLLLEGESDSRYRTLRSQKNRFGAVNELGVFAMTEQGLREVKNPSAIFL 287
Query: 407 SEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVS---RHVNGIQASRADMIISV 463
S SD E ++G +V V+ +G+R L+EIQAL V S ++ R G+ +R ++++V
Sbjct: 288 S--RSD-ELVSGSSVVVLWEGTRPLLVEIQAL-VDHSMLANPRRVAVGLDHNRLSLLLAV 343
Query: 464 LMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGG 523
L + GL++ + +F+NVV GV +TET+ DLA+ A+ SSF P+P + GE+GL G
Sbjct: 344 LHRHGGLQMSDQDVFVNVVGGVKVTETSADLALILALISSFRNRPLPQDLVIFGEVGLAG 403
Query: 524 ELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVV 579
E+R V ++R+S AK G+++ IVP ++ + ME G K L + ++++
Sbjct: 404 EIRPVPSGQERISEAAKHGFKRAIVPFG---NMPKKSIKGMEVFGVKKLSDALDIL 456
>gi|240949016|ref|ZP_04753370.1| DNA repair protein RadA [Actinobacillus minor NM305]
gi|240296603|gb|EER47221.1| DNA repair protein RadA [Actinobacillus minor NM305]
Length = 459
Score = 338 bits (866), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 192/478 (40%), Positives = 285/478 (59%), Gaps = 30/478 (6%)
Query: 109 GKANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQR--TWLPQKPEE 166
KA +T +VC+DCG +W G C+ C S T+ + E R + + +
Sbjct: 2 AKAPKTAYVCNDCGAEYSKWLGQCKECLSWNTISEVRLISAKETKKNDRFSGYAGETSGK 61
Query: 167 VQPVRLLEVNKGMKQLDWRIPL--SGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLL 224
VQ + + + + +P SG + E+ RVLGGG+VPGS +LIGG PG GKSTLL
Sbjct: 62 VQALSEISLQE--------VPRFSSGFY--ELDRVLGGGVVPGSAILIGGHPGAGKSTLL 111
Query: 225 LQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKV 284
LQ+ L + P +YV+GEES++Q+ RA+R+ + TE L + S T +E I
Sbjct: 112 LQVMC------GLSKEIPTLYVTGEESLQQVAMRANRLGLPTEHLKMLSETSVEHICNIA 165
Query: 285 QPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGD 344
P+ ++IDSIQ ++L + S G + QV+EC S L R+AK + +++ GHVTK G
Sbjct: 166 DQEKPKIMVIDSIQVMHLADIQSSPGSVSQVRECASFLTRYAKTRQVAIIMVGHVTKDGT 225
Query: 345 IAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKI 404
+AGP+VLEH +DA L +EGE S YR LRS KNRFG+ +ELGVF M++ GL+ V NPS I
Sbjct: 226 LAGPKVLEHAIDASLLLEGESDSRYRTLRSQKNRFGAVNELGVFAMTEQGLREVKNPSAI 285
Query: 405 FLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVS---RHVNGIQASRADMII 461
FLS E ++G +V V+ +G+R L+EIQAL V S ++ R G+ +R +++
Sbjct: 286 FLSR---SEELVSGSSVVVLWEGTRPLLVEIQAL-VDHSMLANPRRVAVGLDHNRLSLLL 341
Query: 462 SVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGL 521
+VL + GL++ + +F+NVV GV +TET+ DLA+ A+ SSF P+P + GE+GL
Sbjct: 342 AVLHRHGGLQMSDQDVFVNVVGGVKVTETSADLALILALISSFRNRPLPQDLVIFGEVGL 401
Query: 522 GGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVV 579
GE+R V ++R+S AK G+++ IVP A G ME +G K L E ++++
Sbjct: 402 AGEIRPVPSGQERISEAAKHGFKRAIVPFGNMPKKAIKG---MEVMGVKKLSEALDIL 456
>gi|309804741|ref|ZP_07698806.1| DNA repair protein RadA [Lactobacillus iners LactinV 09V1-c]
gi|308166133|gb|EFO68351.1| DNA repair protein RadA [Lactobacillus iners LactinV 09V1-c]
Length = 459
Score = 338 bits (866), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 190/471 (40%), Positives = 274/471 (58%), Gaps = 18/471 (3%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T + C +C Y + G C C + +++ + + + L P +L
Sbjct: 5 KTQYRCKNCDYVSASYLGRCPNCGAWNQLEKETEVAKTTSNRLTASRLITAIGNNDPKKL 64
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
E++ KQ+ P S E+ RVLGGG+VPGSLVL+GGDPG+GKSTL+LQ+ I+
Sbjct: 65 SEIDIK-KQIRITTPFS-----ELNRVLGGGIVPGSLVLVGGDPGIGKSTLMLQIMGSIS 118
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+ H V+YVSGEES QI RA+R+ I+ EL LYS T++E+I E++ L P L
Sbjct: 119 NAHK------VLYVSGEESASQIKMRAERLHISDTELLLYSETNMENIREQIVDLKPEFL 172
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
+IDSIQT+ G QV+E T+ LL+ AK I V + GHVTK G IAGP++LE
Sbjct: 173 VIDSIQTMNEPSQDSMVGSATQVREVTAELLKIAKIDKITVFVIGHVTKEGAIAGPKILE 232
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EG+K SYR+LRSVKNRFG+T+E+G+FEM + GL V+NPS +FL E+ +
Sbjct: 233 HMVDTVLYFEGDKHHSYRILRSVKNRFGATNEIGMFEMKEEGLSEVTNPSAVFLDERLPN 292
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMKQAGL 470
S G A+ V ++G+R L +IQAL + R +G+ +R ++++VL K+ L
Sbjct: 293 S---TGSAIVVSLEGTRPILADIQALVTPTAFGYAKRTTSGLDYNRVALLLAVLEKRGNL 349
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ FL G+ L E A DLA+ A+ SS+ I F+GE+GL GE+R ++
Sbjct: 350 MLQNQDAFLTATGGIKLNEPAIDLAICMAVASSYKNKEIAVTDCFVGEVGLTGEIRRINN 409
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVFT 581
+E RV A G+++ VPK S +E +G +L E + + FT
Sbjct: 410 IEARVKEAATRGFKRIFVPK-YNVSAKLQSHTTIEIVGVISLMEALKIEFT 459
>gi|365122646|ref|ZP_09339547.1| DNA repair protein RadA [Tannerella sp. 6_1_58FAA_CT1]
gi|363642394|gb|EHL81752.1| DNA repair protein RadA [Tannerella sp. 6_1_58FAA_CT1]
Length = 457
Score = 338 bits (866), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 190/481 (39%), Positives = 294/481 (61%), Gaps = 48/481 (9%)
Query: 116 WVCSDCGYTDGQWWGMCRAC--------ESVGTMKRYSAGESDEGPVVQRTWLPQKPEEV 167
++C++CG +W G C C E + T + SA +S ++ + +
Sbjct: 8 YICTNCGADSPKWIGKCPICGEWNSYVEEIINT--KLSATKS--------SYHSTENSKS 57
Query: 168 QPVRLLEVNKGMK-QLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQ 226
+P++L E+N + ++D R +E+ RVLGGGLVPGSLVLIGG+PG+GKSTL+LQ
Sbjct: 58 KPLKLNEINIAEEPRIDVR-------NSELNRVLGGGLVPGSLVLIGGEPGIGKSTLILQ 110
Query: 227 MAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATE-ELFLYSSTDIEDIVEKVQ 285
+ +H +YVSGEES Q+ RADR+ + + ++ T +E+I ++
Sbjct: 111 T---VLGLHG----KKTLYVSGEESARQLKLRADRIQKSENPDCYIVCETSLEEIFVHIK 163
Query: 286 PLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDI 345
+ P +IIDSIQT+ + S G + QV+EC++++L+FAK+T PVLL GH+ K G I
Sbjct: 164 NVQPDLVIIDSIQTISTETIESSPGSVSQVRECSASILKFAKETGTPVLLIGHINKEGSI 223
Query: 346 AGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIF 405
AGP+VLEHIVD VL EG++ YR+LRS+KNRFGST ELG++EM Q GL+ VSNPS++
Sbjct: 224 AGPKVLEHIVDTVLQFEGDQHYMYRILRSIKNRFGSTAELGIYEMRQNGLREVSNPSELL 283
Query: 406 LSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISV 463
LS+ H E L+G+A+A ++G R FLIE Q+L + + T R G R +M+++V
Sbjct: 284 LSQNH---EGLSGVAIAAAIEGIRPFLIETQSLVSTAAYGTPQRSATGFDLRRMNMLLAV 340
Query: 464 LMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGG 523
L K+ G KL + +FLN+ G+ + + A DL++ +AI SS ++ I N GE+GL G
Sbjct: 341 LEKRVGFKLAQKDVFLNIAGGLKVNDPAMDLSIISAILSSNMDMAIENHTCMAGEVGLSG 400
Query: 524 ELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFE----QMEFIGCKNLKEVINVV 579
E+R V+R+E+R+S KLG+++ ++P + K GF+ +E + + ++E +
Sbjct: 401 EIRPVNRIEQRISEAEKLGFKRILIPYNNLK-----GFDDKKLNIEIVPVRKVEEAFRQL 455
Query: 580 F 580
F
Sbjct: 456 F 456
>gi|402830526|ref|ZP_10879226.1| DNA repair protein RadA [Capnocytophaga sp. CM59]
gi|402284947|gb|EJU33439.1| DNA repair protein RadA [Capnocytophaga sp. CM59]
Length = 458
Score = 337 bits (865), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 187/478 (39%), Positives = 286/478 (59%), Gaps = 35/478 (7%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTM--------KRYSAGESDEGPVVQRTWLPQKP 164
+T + C +CG +W G C AC+ T+ +++ + DE R+ +K
Sbjct: 5 KTAFFCQNCGAQYSKWQGQCYACKEWNTIVEEVIQKEEKHQWKKEDEQDDTPRS---RKT 61
Query: 165 EEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLL 224
+ P+ + K M+ LD SG E+ VLGGG+VPGS+VLIGG+PG+GKSTLL
Sbjct: 62 NKYVPLHEITTEKEMR-LD-----SG--DQELNNVLGGGIVPGSVVLIGGEPGIGKSTLL 113
Query: 225 LQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKV 284
LQ+A + P +YVSGEES +QI R +R+ A ++ + T ++I +++
Sbjct: 114 LQIA--------MRMPYKTLYVSGEESQKQIKMRGERITNARNNCYILTETKTQNIFQQI 165
Query: 285 QPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGD 344
+ L P LIIDSIQT++ + SAG + Q++ECT+ L+++AK T +PV++ GH+TK G
Sbjct: 166 KDLDPEILIIDSIQTLHSDYIEASAGSISQIRECTAELIKYAKLTGVPVIIVGHITKDGT 225
Query: 345 IAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKI 404
IAGP++LEH+VD VL EG++ +R+LR++KNRFGST ELG++EM GL+ V+NPS++
Sbjct: 226 IAGPKILEHMVDTVLQFEGDRNHVFRILRALKNRFGSTSELGIYEMLSTGLREVNNPSEV 285
Query: 405 FLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIIS 462
LS+ +S +G A+ ++G R +IEIQAL S T R G A R +M+++
Sbjct: 286 LLSKTDENS---SGTAIVATIEGMRPLMIEIQALVSSAVYGTPQRSTTGFNAKRLNMLLA 342
Query: 463 VLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLG 522
VL K+AG +L +FLN+ G+++ + + DL VA AI SS + IP F E+GLG
Sbjct: 343 VLEKRAGFRLGSKDVFLNITGGISVDDPSTDLGVAMAILSSNEDVAIPKTFCFAAEVGLG 402
Query: 523 GELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
GE+R V R+E+R+S KLG+ + K + + A + I ++EVI +F
Sbjct: 403 GEIRPVQRVEQRISEAEKLGFDTIFISKYCKLTAAK---SNINVIAYAKVEEVIAHLF 457
>gi|399925557|ref|ZP_10782915.1| DNA repair protein RadA [Myroides injenensis M09-0166]
Length = 456
Score = 337 bits (865), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 189/480 (39%), Positives = 289/480 (60%), Gaps = 41/480 (8%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRT----WLPQKPEE-- 166
+T + C +CG +W G C +C T+ V+Q+ W P
Sbjct: 5 KTAFFCQNCGAQTPKWMGQCPSCREWNTLVE---------EVIQKEEKTGWKPSNAASSG 55
Query: 167 ----VQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKST 222
+P+++ E++ + I ++ L G E+ RVLGGGLVPGS+VL+GG+PG+GKST
Sbjct: 56 TKRVAKPLKVREIDSTEE-----IRMNTLDG-ELNRVLGGGLVPGSMVLLGGEPGIGKST 109
Query: 223 LLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVE 282
LLLQ++ L P +YVSGEES +QI RA+R+ + ++ + T+ ++I
Sbjct: 110 LLLQIS--------LKLPFKTLYVSGEESQKQIKMRAERINPINDNCYILTETNTQNIFR 161
Query: 283 KVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKS 342
+++ + P LIIDSIQT++ + SAG + Q+KECT+ L +FAK+T PVL+ GH+TK
Sbjct: 162 QIEEIQPDVLIIDSIQTLHTDYIESSAGTVSQIKECTAELTKFAKETGTPVLIIGHITKD 221
Query: 343 GDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPS 402
G IAGP++LEH+VD VL EG++ YR+LR+ KNRFGST ELG++EM GL+ VSNPS
Sbjct: 222 GSIAGPKMLEHMVDTVLQFEGDRNHVYRILRANKNRFGSTAELGIYEMQGSGLREVSNPS 281
Query: 403 KIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMI 460
+I +S H D E L+G A+A ++G R ++E+QAL S T R G R +MI
Sbjct: 282 EILIS--HKDEE-LSGTAIAATLEGMRPLMVEVQALVSSAVYGTPQRSATGYNLKRLNMI 338
Query: 461 ISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIG 520
++VL K+AG +L + +FLN+ G+ + + A DL V A+I SS + I G+ F GE+G
Sbjct: 339 LAVLEKRAGFRLGQKDVFLNITGGITVDDPAIDLGVVASILSSDQDISIDKGVTFAGEVG 398
Query: 521 LGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
L GE+R V+R+++R+ KLG+ + +V K + S G ++ I +++V+ +F
Sbjct: 399 LSGEIRPVNRVDQRIQEAEKLGFSQILVSKYNKISYNGTG---IKVILVTKIEDVVEHLF 455
>gi|170077599|ref|YP_001734237.1| DNA repair protein RadA [Synechococcus sp. PCC 7002]
gi|169885268|gb|ACA98981.1| DNA repair protein RadA [Synechococcus sp. PCC 7002]
Length = 473
Score = 337 bits (865), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 193/449 (42%), Positives = 274/449 (61%), Gaps = 23/449 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQ---- 168
+T +VC +CG QW G C C G+++ E + V RTW KP+ +
Sbjct: 5 KTVYVCRECGAEARQWLGKCPDCGVYGSLQE-EIREKESSTGVSRTW-HHKPKTTRKAAS 62
Query: 169 PVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMA 228
PV V R+ FG E+ RVLGGGLVPGSLVLIGGDPG+GKSTLLLQ+A
Sbjct: 63 PVSRTAVKFTDIDTRQRMRFGSGFG-ELDRVLGGGLVPGSLVLIGGDPGIGKSTLLLQVA 121
Query: 229 AIIADVHDLGEPSP-VVYVSGEESVEQIGNRADRMMIAT----EELFLYSSTDIEDIVEK 283
+ L P ++YVS EES +QI R DR+ A E L++ + T +E I+ +
Sbjct: 122 ------YQLSTSLPRILYVSAEESGQQIKLRGDRLRDADHPPEENLYVLTETGLETILAE 175
Query: 284 VQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSG 343
++ L P+ +IDSIQT+Y + + G + QV+ECTSAL++ AK+ NI + + GHVTK G
Sbjct: 176 LETLRPQVAVIDSIQTLYYSALGSAPGSVSQVRECTSALMQVAKRENITLFIVGHVTKEG 235
Query: 344 DIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSK 403
IAGPRVLEH+VD VLY EG++++S+RLLRSVKNRFG+T E+G+FEM + GL+ V NPS+
Sbjct: 236 AIAGPRVLEHLVDTVLYFEGDRYASHRLLRSVKNRFGATHEVGIFEMGEQGLEEVLNPSE 295
Query: 404 IFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMII 461
+FL + E G A V +G+R L+E+QAL S S+ R G+ SR I+
Sbjct: 296 LFLGNRE---EATPGTATVVACEGTRPLLVELQALVSPTSYSSPRRSTTGVDYSRLQQIL 352
Query: 462 SVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGL 521
+VL K+ G+ L + ++ G+ ++E A DL +A ++ +SF + + IGE+GL
Sbjct: 353 AVLEKRVGIPLSKLDAYVASAGGLTVSEPAVDLGIAISLVASFRDRLVSPQTVLIGEVGL 412
Query: 522 GGELRMVSRMEKRVSTVAKLGYRKCIVPK 550
GG++R VS +E R+ KLG+ + IVPK
Sbjct: 413 GGQIRPVSHLETRLKEAMKLGFTRAIVPK 441
>gi|299142691|ref|ZP_07035821.1| DNA repair protein RadA [Prevotella oris C735]
gi|298575906|gb|EFI47782.1| DNA repair protein RadA [Prevotella oris C735]
Length = 460
Score = 337 bits (865), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 186/475 (39%), Positives = 283/475 (59%), Gaps = 25/475 (5%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEV---- 167
++ +VCS+CG +W G C +C T K +D G + + +
Sbjct: 4 DKIAYVCSNCGQESAKWIGKCPSCGQWNTFKEIRIA-NDTGSMAAKNAAHAVRSSITNKN 62
Query: 168 QPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQM 227
+P+ L E++ + P + NE+ RVLGGGLV GS+VL+GG+PG+GKSTL LQ
Sbjct: 63 KPLFLHEISAKDE------PRIDMHDNELNRVLGGGLVSGSIVLLGGEPGIGKSTLTLQT 116
Query: 228 AAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPL 287
+ + ++YVSGEES QI RA+R+ E+ + T +E I + ++ +
Sbjct: 117 ILHMNE-------RRILYVSGEESAHQIKMRAERIG-GNSEVMILCETSLESIFDNIKEV 168
Query: 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAG 347
P ++IDSIQT+ V S G + QV+EC +ALLRFAK + IPV+L GH+ K G +AG
Sbjct: 169 KPELVVIDSIQTISTSDVESSPGSITQVRECAAALLRFAKTSGIPVILIGHINKEGTLAG 228
Query: 348 PRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLS 407
P++LEHIVD V+ EG++ YR+LRS+KNRFGST ELG++EM Q GL+ VSNPS++ LS
Sbjct: 229 PKILEHIVDTVIQFEGDQHYMYRILRSIKNRFGSTSELGIYEMQQNGLRQVSNPSELLLS 288
Query: 408 EQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLM 465
+ H E L+G+A++ ++G R FL+E QAL S + T R G R +M+++VL
Sbjct: 289 QDH---EGLSGVAISSAIEGVRPFLVETQALVSSAAYGTPQRSATGFDQRRLNMLLAVLE 345
Query: 466 KQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGEL 525
K+ G KL + +F+N+ G+ +T+ A DL+V AA+ SS ++ I G GE+GL GE+
Sbjct: 346 KRVGFKLMQKDVFINIAGGLRVTDLAMDLSVIAAVLSSNVDTAIEAGWCMAGEVGLSGEV 405
Query: 526 RMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
R V+R+E+R++ KLG+ I+P K + ++E K ++E + +F
Sbjct: 406 RPVNRIEQRIAEAEKLGFAHMIIPAHNLKGFDKRKY-KIELHPVKKVEEALRTLF 459
>gi|288925100|ref|ZP_06419036.1| DNA repair protein RadA [Prevotella buccae D17]
gi|288338290|gb|EFC76640.1| DNA repair protein RadA [Prevotella buccae D17]
Length = 480
Score = 337 bits (865), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 187/490 (38%), Positives = 288/490 (58%), Gaps = 35/490 (7%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPV- 170
++ +VC++CG +W G C +C T K + G + + + +
Sbjct: 4 DKIAYVCNNCGQESPKWVGKCPSCGQWNTFKEIRISGDNGGEAARHAAMTLRHGGAASMF 63
Query: 171 ------RLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLL 224
R +++ Q + RI + NE+ RVLG G+VPGS++L+GG+PG+GKSTL
Sbjct: 64 GGRGSGRTIKLRDISSQAEPRIDM---HDNELNRVLGDGMVPGSIILLGGEPGIGKSTLT 120
Query: 225 LQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMM--IAT----------EELFLY 272
LQ + D ++YVSGEES QI RA+R+ I T + + +
Sbjct: 121 LQTILSMGD-------RQILYVSGEESEHQIKLRAERIAAGITTSQEHTGQETGDNISIL 173
Query: 273 SSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIP 332
T +E I E ++ + P ++IDSIQT+ V S G + QV+EC ++LLRFAK + +P
Sbjct: 174 CETSLEKIFENIKEVKPEIIVIDSIQTISTDQVDSSPGSITQVRECAASLLRFAKTSGVP 233
Query: 333 VLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQ 392
V+L GH+ K G +AGP++LEHIVD V+ EG++ YR+LRS+KNRFGST ELG++EM Q
Sbjct: 234 VILIGHINKEGTLAGPKILEHIVDTVIQFEGDQHYMYRILRSIKNRFGSTSELGIYEMQQ 293
Query: 393 LGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVN 450
GL+ V+NPS++ L+E + E L+G+A++ ++G R FL+E QAL S + T R
Sbjct: 294 SGLRPVANPSELLLTE---NREGLSGIAISSAIEGVRPFLVETQALVSSAAYGTPQRSAT 350
Query: 451 GIQASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIP 510
G R +M+++VL K+ G KL + +FLN+ G+ +T+ A DL+V AA+ SS ++ I
Sbjct: 351 GFDQRRLNMLLAVLEKRVGFKLMQKDVFLNIAGGLRVTDLAMDLSVIAAVLSSNVDTAIE 410
Query: 511 NGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCK 570
NG GE+GL GE+R VSR+E+R++ KLG+R I+PK+ F Q+E +
Sbjct: 411 NGWCMAGEVGLSGEVRPVSRIEQRIAEAEKLGFRHIIIPKNNHNGFDHRKF-QIEIHPVR 469
Query: 571 NLKEVINVVF 580
++E + V+F
Sbjct: 470 KVEEALRVLF 479
>gi|336394670|ref|ZP_08576069.1| DNA repair protein RadA [Lactobacillus farciminis KCTC 3681]
Length = 456
Score = 337 bits (865), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 191/473 (40%), Positives = 283/473 (59%), Gaps = 26/473 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQK---PEEVQP 169
+T +VC +CGY ++ G C C M E D+ V+ + P + E +P
Sbjct: 5 KTKFVCQNCGYVSPKYLGRCPNCGVWNQM----VEEVDQA-TVKASATPSRRVSDLESKP 59
Query: 170 VRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAA 229
V++ +V+ R P +E+ RVLGGG+VPGSL+LIGGDPG+GKSTLL Q++
Sbjct: 60 VKIGDVSF------EREPRIKTDMDELNRVLGGGIVPGSLILIGGDPGIGKSTLLTQVSG 113
Query: 230 IIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSP 289
+ V+YVSGEES QI RADR+ I + L++Y TD+ I + + + P
Sbjct: 114 QLQKTG-----GKVLYVSGEESASQIKMRADRLGIKGDNLYIYPQTDMSYIRQTIDDMKP 168
Query: 290 RALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPR 349
LIIDS+QT+ ++ + G + Q++E T+ L+ AK+ NI V + GHVTK G IAGP+
Sbjct: 169 DFLIIDSVQTMDEPEISSAVGSISQIREVTAELMNIAKQQNITVFVVGHVTKGGAIAGPK 228
Query: 350 VLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQ 409
+LEH+VD VLY EG+ SYR+LRSVKNRFGST+E+G+FEM GL V+NPS+IFL E+
Sbjct: 229 ILEHMVDTVLYFEGDTHHSYRILRSVKNRFGSTNEIGIFEMRTKGLVEVANPSEIFLEER 288
Query: 410 HSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQ 467
+++ G AV V M+G+R L+EIQ+L R G+ +R +I++VL K+
Sbjct: 289 LANAN---GSAVVVSMEGTRPILVEIQSLITPTVFGNAKRTATGLDHNRVSVIMAVLEKR 345
Query: 468 AGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRM 527
L LQ +L GV L E A DLA+A +I SS+ IP F+GE+GL GE+R
Sbjct: 346 GNLMLQNQDAYLKSTGGVKLDEPAIDLALAMSIASSYKNMGIPGTDCFVGEVGLTGEVRR 405
Query: 528 VSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
V+R+++RV+ KLG+++ +PK+ + +++ IG + + +N +F
Sbjct: 406 VNRIDQRVNEAEKLGFKRIFIPKNNLGDWSK--NNKIQIIGVSTVSDAMNKIF 456
>gi|223934013|ref|ZP_03625968.1| DNA repair protein RadA [Streptococcus suis 89/1591]
gi|302024569|ref|ZP_07249780.1| DNA repair protein RadA [Streptococcus suis 05HAS68]
gi|330833653|ref|YP_004402478.1| DNA repair protein [Streptococcus suis ST3]
gi|386585058|ref|YP_006081461.1| DNA repair protein [Streptococcus suis D9]
gi|223897327|gb|EEF63733.1| DNA repair protein RadA [Streptococcus suis 89/1591]
gi|329307876|gb|AEB82292.1| DNA repair protein [Streptococcus suis ST3]
gi|353737204|gb|AER18213.1| DNA repair protein [Streptococcus suis D9]
Length = 456
Score = 337 bits (865), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 189/470 (40%), Positives = 276/470 (58%), Gaps = 24/470 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T +VC C Y ++ G C C S + + V T +P ++ V
Sbjct: 7 KTTFVCQSCEYHSPKYLGRCPNCGSWSSFVEEVEVAEVKNERVSLTGEKTRPMKLNEVSS 66
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
++V + ++ E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ ++
Sbjct: 67 IQVARTKTNME-----------EFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLS 115
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+ V+YVSGEES +QI RA+R+ E +LY+ T+++ I +++ + P L
Sbjct: 116 TI------GTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSIRTEIEKIKPDFL 169
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQT+ ++ G + QV+E T+ L++ AK NI + GH+TK G +AGPR LE
Sbjct: 170 IIDSIQTIMSPDISSVQGSVSQVREVTNELMQIAKTNNIATFIVGHMTKEGTLAGPRTLE 229
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS++FL E+
Sbjct: 230 HMVDTVLYFEGERQHTFRILRAVKNRFGSTNEIGIFEMQSQGLVEVLNPSEVFLEERLDG 289
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
+ G A+ V M+G+R L E+QAL R G+ +RA +I++VL K+AGL
Sbjct: 290 A---TGSAIVVTMEGTRPILAEVQALVTPTMFGNAKRTTTGLDFNRASLIMAVLEKRAGL 346
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ +L GV L E A DLAVA A+ SS+ + P FIGEIGL GE+R V+R
Sbjct: 347 LLQNQDAYLKSAGGVKLDEPAIDLAVAVALASSYKDKPTNPQECFIGEIGLTGEIRRVNR 406
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+E+R++ AKLG+ K PK++ + +++ I + EV+ VF
Sbjct: 407 IEQRINEAAKLGFTKVYAPKNSLTGIKVP--KEITVISVTTIGEVLQKVF 454
>gi|299821024|ref|ZP_07052912.1| DNA repair protein RadA [Listeria grayi DSM 20601]
gi|299816689|gb|EFI83925.1| DNA repair protein RadA [Listeria grayi DSM 20601]
Length = 495
Score = 337 bits (865), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 193/444 (43%), Positives = 283/444 (63%), Gaps = 20/444 (4%)
Query: 114 TNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRLL 173
T +VC++CGY +W G C +C M + S +G R E P +
Sbjct: 45 TKFVCNNCGYESPKWMGKCPSCGEWNQMVE-ALTPSKKG----RATFSHTAGE--PAKAT 97
Query: 174 EVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIAD 233
+N+ + + RI ++ + E+ RVLGGG+V GS++L+GGDPG+GKSTLLLQ++A ++
Sbjct: 98 PINQVASEKEERI-MTKM--PELNRVLGGGVVVGSMILVGGDPGIGKSTLLLQVSAELSV 154
Query: 234 VHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALI 293
V+Y+SGEESV Q RA+R+ ++ + L+L++ T++E I + +Q + P ++
Sbjct: 155 -----SGKKVLYISGEESVRQTKLRAERLQVSGDNLYLFAETNLEAIQDTIQFVKPEFVV 209
Query: 294 IDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEH 353
IDSIQT+Y V +AG + QV+ECT+AL++ AK NI + + GHVTK G IAGPR+LEH
Sbjct: 210 IDSIQTIYHPDVTSAAGSVSQVRECTAALMQIAKTQNIAIFIVGHVTKEGAIAGPRLLEH 269
Query: 354 IVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDS 413
+VD VLY EGE+ +YR+LR+VKNRFGST+ELG+FEM +GL V+NPS++FL E+
Sbjct: 270 MVDTVLYFEGERHHAYRILRAVKNRFGSTNELGIFEMRDVGLVEVANPSEVFLEERL--- 326
Query: 414 EFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVLMKQAGLK 471
E +G V V ++G+R L+EIQAL R G+ ++ +I++VL K+AGL
Sbjct: 327 EGASGSTVVVSLEGTRPVLVEIQALVSPTMYGNAKRMATGLDHNKVSLIMAVLEKRAGLM 386
Query: 472 LQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRM 531
LQ +L GV L E A DLA+A +I SS+ + P N FIGE+GL GE+R VSR+
Sbjct: 387 LQNQDAYLKAAGGVKLDEPAVDLAIAISIASSYRDKPTNNTDCFIGEVGLTGEIRRVSRI 446
Query: 532 EKRVSTVAKLGYRKCIVPKSAEKS 555
E+RV AKLG+++ +P + E S
Sbjct: 447 EQRVKEAAKLGFKRIFIPSNNEGS 470
>gi|395243196|ref|ZP_10420183.1| DNA repair protein radA [Lactobacillus hominis CRBIP 24.179]
gi|394484426|emb|CCI81191.1| DNA repair protein radA [Lactobacillus hominis CRBIP 24.179]
Length = 459
Score = 337 bits (865), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 190/470 (40%), Positives = 273/470 (58%), Gaps = 18/470 (3%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T + C +CGY + G C C + ++ + + L +PV+L
Sbjct: 5 KTRYKCKNCGYISASYLGRCPNCGAWNQFEQETQEVKKVSTKATASRLMTATGNNEPVKL 64
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
V K K+ P E+ RVLGGG+VPGSLVLIGGDPG+GKSTL+LQ+++ +A
Sbjct: 65 GTV-KAKKEQRVVTPYE-----ELNRVLGGGIVPGSLVLIGGDPGIGKSTLMLQISSNLA 118
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
H V+YVSGEES QI RADR+ + + LY T++++I E++ L P L
Sbjct: 119 QGHK------VLYVSGEESANQIKMRADRLGLGQSNILLYPETNMDNIREQINDLKPEFL 172
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
+IDSIQT+ + G QV+E TS L++ AK I V + GHVTK G IAGP++LE
Sbjct: 173 VIDSIQTMNEPSLDSMVGSASQVREVTSELMKIAKNDQITVFVIGHVTKEGAIAGPKILE 232
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EG+ SYR+LRSVKNRFG+ +E+G+FEM GL V+NPS IFL E+ +
Sbjct: 233 HMVDTVLYFEGDGHHSYRILRSVKNRFGAANEIGMFEMQNEGLSEVTNPSAIFLDERLPN 292
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMKQAGL 470
S G A+ V ++G+R + +IQAL + R +G+ +R ++++VL K+ L
Sbjct: 293 S---TGSAIVVSLEGTRPLMADIQALVTPTAFGYAKRTTSGLDYNRVALLLAVLEKRGNL 349
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ FL G+ L E A DLA+A A+ SS+ IP F+GEIGL GE+R V+R
Sbjct: 350 MLQNQDAFLTATGGIKLNEPAIDLAIAMAVASSYKNQEIPATDCFVGEIGLTGEVRRVNR 409
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+E R+ K+G+++ +PK S E +E IG +L + + +VF
Sbjct: 410 IEARIKEAQKVGFKRIFIPKHNLTSKIKNNSE-IEVIGVASLPQTLKLVF 458
>gi|427725816|ref|YP_007073093.1| DNA repair protein RadA [Leptolyngbya sp. PCC 7376]
gi|427357536|gb|AFY40259.1| DNA repair protein RadA [Leptolyngbya sp. PCC 7376]
Length = 476
Score = 337 bits (865), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 194/466 (41%), Positives = 284/466 (60%), Gaps = 32/466 (6%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWL------PQKPEE 166
+T VC +CG QW+G C +C G+++ E V R+W +K
Sbjct: 5 KTVHVCRECGAEARQWFGKCPSCGVYGSLQE-EIREKATSSGVNRSWHNKPSASKRKSAT 63
Query: 167 VQPVRLLEVNKGMKQLDWRIPLSGLFGN---EVARVLGGGLVPGSLVLIGGDPGVGKSTL 223
+P L+ N Q+D L FG+ E+ RVLGGG+VPGSLVLIGGDPG+GKSTL
Sbjct: 64 PKPRVALKFN----QIDTSQQLR--FGSGYGELDRVLGGGIVPGSLVLIGGDPGIGKSTL 117
Query: 224 LLQMAAIIADVHDLGEPSP-VVYVSGEESVEQIGNRADRMMIAT----EELFLYSSTDIE 278
LLQ+A + L E P ++YVS EES +QI R DR+ A E L++ + T +E
Sbjct: 118 LLQVA------YQLSENLPRILYVSAEESGQQIKLRGDRLKSAEDNPEENLYILTETGLE 171
Query: 279 DIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGH 338
I+ +++ L P+ +IDSIQT+Y ++ + G + QV+ECTSAL++ AK+ NI + + GH
Sbjct: 172 TILSELETLRPQVAVIDSIQTLYYSSLSSAPGSVSQVRECTSALMQVAKRENITLFIVGH 231
Query: 339 VTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAV 398
VTK G IAGPRVLEH+VD VLY EG++++S+RLLRSVKNRFG+T E+G+FEM + GL+ V
Sbjct: 232 VTKEGAIAGPRVLEHLVDTVLYFEGDRYASHRLLRSVKNRFGATHEVGIFEMCEQGLEEV 291
Query: 399 SNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASR 456
NPS +FL + ++ G A V +G+R L+E+QAL S S+ R G+ SR
Sbjct: 292 LNPSALFLGNREEET---PGTATVVACEGTRPLLVELQALVSPTSYSSPRRSTTGVDYSR 348
Query: 457 ADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFI 516
I++VL K+ G+ L + ++ G+ ++E A DL +A A+ +SF + + +
Sbjct: 349 LQQILAVLEKRVGIPLSKLDAYVAAAGGLTVSEPAVDLGMAVALVASFRDRMVDPKTILV 408
Query: 517 GEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFE 562
GE+GLGG++R VS +E R+ KLG+ + I+PK + S LG +
Sbjct: 409 GEVGLGGQVRPVSHLETRLKEAKKLGFTRAIIPKGQKLSEENLGID 454
>gi|224475674|ref|YP_002633280.1| DNA repair protein RadA [Staphylococcus carnosus subsp. carnosus
TM300]
gi|222420281|emb|CAL27095.1| DNA repair protein radA [Staphylococcus carnosus subsp. carnosus
TM300]
Length = 456
Score = 337 bits (865), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 187/437 (42%), Positives = 273/437 (62%), Gaps = 23/437 (5%)
Query: 118 CSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRLLEVNK 177
C CGY +W G C C + M+ E E P + + E Q ++ ++N+
Sbjct: 10 CMACGYQSPKWMGKCPNCGAWNQMEEII--EKKEAP----SGRGMRTRE-QTAKVTKLNQ 62
Query: 178 GMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDL 237
+ RI S E RVLGGG+V GSLVLIGGDPG+GKSTLLLQ+ + L
Sbjct: 63 VQNETTPRIKTSS---PEFDRVLGGGIVQGSLVLIGGDPGIGKSTLLLQICSA------L 113
Query: 238 GEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIIDSI 297
+ V+Y++GEES+ Q RADR+ + L +++ TD+E I E V+ P +++DSI
Sbjct: 114 SQNKKVLYITGEESLNQTKLRADRLDEDSSNLNVFAETDLEVIKEAVKQTEPDLVVVDSI 173
Query: 298 QTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDA 357
QT+Y + + G + QV+E T L+ AK+ NI + GHVTK G IAGPR+LEH+VD
Sbjct: 174 QTIYHPDINSAPGSVSQVRESTQILMGIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDT 233
Query: 358 VLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLA 417
VLY EG++ +YR+LR+VKNRFGST+E+G+FEM GL+ V NPS++FL E+ ++ +A
Sbjct: 234 VLYFEGDEHHAYRILRAVKNRFGSTNEMGIFEMKHSGLKGVKNPSEMFLEERSTN---VA 290
Query: 418 GLAVAVIMDGSRSFLIEIQALCVSGSTVS---RHVNGIQASRADMIISVLMKQAGLKLQE 474
G + M+G+R LIE+QAL V+ +T + R GI +R +++++VL K+ LQ+
Sbjct: 291 GSTIVPTMEGTRPLLIEVQAL-VTPTTFNNPRRMATGIDHNRLNLLMAVLEKKESYLLQQ 349
Query: 475 NAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKR 534
++ V GV LTE A DLA+ AAI SSF + P+ ++GE+GL GE+R VSR+E+R
Sbjct: 350 QDAYIKVAGGVRLTEPAVDLALIAAIASSFKDQPVNGMDCYVGEVGLTGEVRRVSRIEQR 409
Query: 535 VSTVAKLGYRKCIVPKS 551
V AKLG+++ I+PK+
Sbjct: 410 VQEAAKLGFKRVIIPKT 426
>gi|281425183|ref|ZP_06256096.1| DNA repair protein RadA [Prevotella oris F0302]
gi|281400649|gb|EFB31480.1| DNA repair protein RadA [Prevotella oris F0302]
Length = 460
Score = 337 bits (865), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 185/475 (38%), Positives = 284/475 (59%), Gaps = 25/475 (5%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEV---- 167
++ +VCS+CG +W G C +C T K +D G + + +
Sbjct: 4 DKIAYVCSNCGQESAKWIGKCPSCGQWNTFKEIRIA-NDTGSMAAKNAAHAVRSSITNKN 62
Query: 168 QPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQM 227
+P+ L E++ + P + +E+ RVLGGGLVPGS+VL+GG+PG+GKSTL LQ
Sbjct: 63 KPLFLHEISAKDE------PRIDMHDDELNRVLGGGLVPGSIVLLGGEPGIGKSTLTLQT 116
Query: 228 AAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPL 287
+ + ++YVSGEES QI RA+R+ E+ + T +E I + ++ +
Sbjct: 117 ILHMNE-------RRILYVSGEESAHQIKMRAERIG-GNSEVMILCETSLESIFDNIKEV 168
Query: 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAG 347
P ++IDSIQT+ V S G + QV+EC +ALLRFAK + IPV+L GH+ K G +AG
Sbjct: 169 KPELVVIDSIQTISTSDVESSPGSITQVRECAAALLRFAKTSGIPVILIGHINKEGTLAG 228
Query: 348 PRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLS 407
P++LEHIVD V+ EG++ YR+LRS+KNRFGST ELG++EM Q GL+ VSNPS++ LS
Sbjct: 229 PKILEHIVDTVIQFEGDQHYMYRILRSIKNRFGSTSELGIYEMQQNGLRQVSNPSELLLS 288
Query: 408 EQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLM 465
+ H E L+G+A++ ++G R FL+E QAL S + T R G R +M+++VL
Sbjct: 289 QDH---EGLSGVAISSAIEGVRPFLVETQALVSSAAYGTPQRSATGFDQRRLNMLLAVLE 345
Query: 466 KQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGEL 525
K+ G KL + +F+N+ G+ +T+ A DL+V AA+ SS ++ I G GE+GL GE+
Sbjct: 346 KRVGFKLMQKDVFINIAGGLRVTDLAMDLSVIAAVLSSNVDTAIEAGWCMAGEVGLSGEV 405
Query: 526 RMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
R V+R+E+R++ KLG+ I+P K + ++E + ++E + +F
Sbjct: 406 RPVNRIEQRIAEAEKLGFAYMIIPAHNLKGFDKRKY-KIELHPVRKVEEALRTLF 459
>gi|193215382|ref|YP_001996581.1| DNA repair protein RadA [Chloroherpeton thalassium ATCC 35110]
gi|193088859|gb|ACF14134.1| DNA repair protein RadA [Chloroherpeton thalassium ATCC 35110]
Length = 459
Score = 337 bits (865), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 195/475 (41%), Positives = 286/475 (60%), Gaps = 26/475 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVV-QRTWLPQKPE-EVQPV 170
+T +VCS+CG ++ G C C S GT+ S + P Q+ P V+P
Sbjct: 5 KTRYVCSNCGAVSIKYQGKCFECGSWGTLTEESV---EPAPTFSQKIHSKHSPNVRVKPK 61
Query: 171 RLLEVNK-GMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAA 229
R E+ ++L RI E+ RVLGGGL+ S+VL+GG+PG+GKSTL+LQ+AA
Sbjct: 62 RFSELEDIEEERLSTRI-------EELDRVLGGGLMTASVVLVGGEPGIGKSTLMLQLAA 114
Query: 230 IIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSP 289
+ ++Y+S EES+ QI NRA RM I +E++ L S T +E+I++ V P
Sbjct: 115 NLVG-------KSILYISAEESLHQIRNRAYRMNIRSEDILLVSETQLENILDTVAAEKP 167
Query: 290 RALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPR 349
LI+DSIQT++ G S G + QV+ECTS L+ AK+ I V + GH+TK G IAGP+
Sbjct: 168 DVLIVDSIQTIFSIGFESSPGTVTQVRECTSKLMHLAKREGITVFIIGHITKEGTIAGPK 227
Query: 350 VLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQ 409
VLEHIVD VL EG+ YR+LR++KNRFGST+E+GVFEM+++GL V+NPS+ FL+E+
Sbjct: 228 VLEHIVDTVLQFEGDNHYRYRILRALKNRFGSTNEIGVFEMTEMGLSEVTNPSEAFLAER 287
Query: 410 HSDSEFLAGLAVAVIMDGSRSFLIEIQALCV-SGSTVSRHV-NGIQASRADMIISVLMKQ 467
S ++G V ++G+R L+EIQAL + TV + + +G R ++++VL K+
Sbjct: 288 ---SFGVSGSCVCASLEGARPLLVEIQALVSKTNYTVPQRISSGFDQRRLSLLLAVLEKR 344
Query: 468 AGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRM 527
GL + +FLN G+ L E A +LAV AI S + P + IGEIGL GELR
Sbjct: 345 IGLSMWSQDVFLNAAGGLRLLEPAVELAVCVAIASGMRDIPADSATVAIGEIGLAGELRA 404
Query: 528 VSRMEKRVSTVAKLGYRKCIVPKSAEKSL-ATLGFEQMEFIGCKNLKEVINVVFT 581
VS +E+R+ KLG+ + I+PKS ++L A+ +Q+E + L ++ +
Sbjct: 405 VSHIERRIIEAEKLGFERVILPKSNRENLKASRVNKQIEIVFSPTLNHALDAFLS 459
>gi|373499520|ref|ZP_09589928.1| DNA repair protein RadA [Prevotella micans F0438]
gi|371957236|gb|EHO75003.1| DNA repair protein RadA [Prevotella micans F0438]
Length = 465
Score = 337 bits (864), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 194/480 (40%), Positives = 292/480 (60%), Gaps = 30/480 (6%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMK--RYSAGESDEGP--VVQRTWLPQK---- 163
++ +VCS+CG +W G C +C + K + SA ++ G Q L +
Sbjct: 4 DKIAYVCSNCGQESVKWIGKCPSCGEWNSFKEIKISASDATSGARNAAQLAGLSSRRMAA 63
Query: 164 PEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTL 223
E +P L E++ Q D RI + +E+ RVLGGGLVPGS+VL+GG+PG+GKSTL
Sbjct: 64 HNENKPQMLREISA---QDDPRI---DMHDSELNRVLGGGLVPGSIVLLGGEPGIGKSTL 117
Query: 224 LLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIAT-EELFLYSSTDIEDIVE 282
LQ L V+YVSGEES QI RA+R+ ++ + S T +E I
Sbjct: 118 TLQTI--------LNLQLKVLYVSGEESPHQIKMRAERITNDIPSQIEILSETSLEQIFN 169
Query: 283 KVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKS 342
++ + P ++IDSIQT+ VA S G ++QV+EC +ALLRFAK + +PV+L GH+ K
Sbjct: 170 HIREVQPELVVIDSIQTIATDEVASSPGSIVQVRECAAALLRFAKTSGVPVVLIGHINKE 229
Query: 343 GDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPS 402
G IAGP++LEHIVD V+ EG++ YR+LRS+KNRFGST ELG++EM Q GL+ V NPS
Sbjct: 230 GSIAGPKILEHIVDTVIQFEGDQHYMYRILRSIKNRFGSTSELGIYEMVQTGLRQVENPS 289
Query: 403 KIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMI 460
++ L++ H + L+G+A++ ++G R FL+E QAL S + T R G R +M+
Sbjct: 290 ELLLTDSH---DGLSGVAISSAIEGVRPFLVETQALVSSAAYGTPQRTATGFDQKRLNML 346
Query: 461 ISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIG 520
++VL K+ G K+ + +F+N+ G+ +T+ A DL+V A+I SS ++ PI G GE+G
Sbjct: 347 LAVLEKRVGFKIMQKDVFINIAGGLRVTDMAMDLSVIASILSSNVDTPIEKGWCLCGEVG 406
Query: 521 LGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
L GE+R V+R+E+R++ KLG+ I+PK + L T F +E + ++E + +F
Sbjct: 407 LSGEVRPVNRIEQRIAEAEKLGFGHIIIPKYNIQGL-THKF-NIELHPVRKVEEALRALF 464
>gi|319638579|ref|ZP_07993341.1| DNA repair protein radA [Neisseria mucosa C102]
gi|317400328|gb|EFV80987.1| DNA repair protein radA [Neisseria mucosa C102]
Length = 458
Score = 337 bits (864), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 196/476 (41%), Positives = 280/476 (58%), Gaps = 32/476 (6%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKP--EEV 167
KA +T + CS+CG T +W G C C T++ A + Q +W + +
Sbjct: 3 KAPKTIYQCSECGGTSPKWQGKCPHCGEWNTLQESLASPEPKNARFQ-SWAADTSTVQSL 61
Query: 168 QPVRLLEVNK---GMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLL 224
V EV + GM +LD RVLGGGLV G+++L+GGDPG+GKSTLL
Sbjct: 62 SAVTATEVPRNPTGMGELD--------------RVLGGGLVDGAVILLGGDPGIGKSTLL 107
Query: 225 LQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKV 284
LQ A +A + V+YVSGEES +Q+ RA R+ + TE + L + +E I +
Sbjct: 108 LQTIAKMA------QSRKVLYVSGEESAQQVALRAQRLELPTEGVNLLAEIRMEAIQTAL 161
Query: 285 QPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGD 344
+ P ++IDSIQT+Y + + G + QV+EC + L R AK+ I ++L GHVTK G
Sbjct: 162 KQHQPEVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRMAKQMGIAMILVGHVTKDGA 221
Query: 345 IAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKI 404
IAGPRVLEH+VD VLY EG++ S+YR++R++KNRFG+ +ELGVF M++ GL+ VSNPS I
Sbjct: 222 IAGPRVLEHMVDTVLYFEGDQHSNYRMIRAIKNRFGAANELGVFAMTENGLKGVSNPSAI 281
Query: 405 FLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIIS 462
FL+ D+ G V V +GSR L+EIQAL G T R G++ +R M+++
Sbjct: 282 FLASYRDDT---PGSCVLVTQEGSRPLLVEIQALVDDAHGFTPKRLTVGLEQNRLAMLLA 338
Query: 463 VLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLG 522
VL + G+ + +FLN V GV + E A DLAV A+ SSF P+P GEIGL
Sbjct: 339 VLNRHGGIACFDQDVFLNAVGGVKIGEPAADLAVILAMLSSFRNRPMPEKTVVFGEIGLS 398
Query: 523 GELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINV 578
GE+R V+R ++R+ KLG+++ IVPK+ A F ++ G +L+E I+V
Sbjct: 399 GEVRPVARGQERLKEAEKLGFKRAIVPKANMPRNAK-EFPNLKIYGVSSLQEAIDV 453
>gi|284035439|ref|YP_003385369.1| DNA repair protein RadA [Spirosoma linguale DSM 74]
gi|283814732|gb|ADB36570.1| DNA repair protein RadA [Spirosoma linguale DSM 74]
Length = 461
Score = 337 bits (864), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 187/459 (40%), Positives = 279/459 (60%), Gaps = 29/459 (6%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQP--- 169
+T + C CG +W G C AC T+ VVQ+ P+K P
Sbjct: 5 KTTFFCQSCGNQSAKWMGRCPACGEWNTIVE---------EVVQKDE-PEKGGWRSPSSG 54
Query: 170 ---VRLLEVNKGMKQLDW-RIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLL 225
+++ K + +++ P E+ RVLGGG+V GSLVLIGG+PG+GKSTLLL
Sbjct: 55 PGGLKIAAKPKAIHAINYEEQPRVTTTDGELNRVLGGGIVAGSLVLIGGEPGIGKSTLLL 114
Query: 226 QMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQ 285
Q+A +A + V+YVSGEES +QI RA+R+ T + + + T ++I V+
Sbjct: 115 QIALSLAGLR-------VLYVSGEESEQQIKMRAERLDAPTSDCHVMTETSTQNIFRVVE 167
Query: 286 PLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDI 345
P LIIDSIQT+ V AG + QV+ECT+ +++AK++ +PV + GH+TK G +
Sbjct: 168 HFEPEVLIIDSIQTMQSSLVESGAGSVSQVRECTAEFMKYAKESGVPVFMIGHITKEGSL 227
Query: 346 AGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIF 405
AGP+VLEH+VD VL EG++ ++YR+LR+ KNRFGSTDELG++EM GL+ V+NPS+I
Sbjct: 228 AGPKVLEHMVDTVLTFEGDRHTTYRILRTTKNRFGSTDELGIYEMLGSGLRQVTNPSEIL 287
Query: 406 LSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQAL--CVSGSTVSRHVNGIQASRADMIISV 463
+S++ E L+G+ + +++G+R +IE QAL + T R G A R +M+++V
Sbjct: 288 ISQR---DEALSGVTIGSMLEGNRPLMIESQALVSVATYGTPQRSSTGFDAKRLNMLLAV 344
Query: 464 LMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGG 523
L K+ G +L + +FLN+ G+ + + A DLAV AAI SS+ + IP +AF EIGLGG
Sbjct: 345 LEKRGGFRLGQQDVFLNIAGGLRVEDPAIDLAVCAAIVSSYEDIAIPPSVAFAAEIGLGG 404
Query: 524 ELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFE 562
E+R VSR+E R++ KLG++K + K K L T ++
Sbjct: 405 EVRAVSRIESRIAEAEKLGFKKMFISKYNLKGLDTKSYK 443
>gi|269798081|ref|YP_003311981.1| DNA repair protein RadA [Veillonella parvula DSM 2008]
gi|269094710|gb|ACZ24701.1| DNA repair protein RadA [Veillonella parvula DSM 2008]
Length = 457
Score = 337 bits (864), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 186/473 (39%), Positives = 289/473 (61%), Gaps = 24/473 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQ--KPEEVQPV 170
++ + C +CG +W G C C T+ E+ R Q KP + +
Sbjct: 5 KSVFFCQNCGAESSKWMGRCPQCGEWNTLVEEIIKETKHSRTPSRGVGNQTAKPTALPDI 64
Query: 171 RLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAI 230
+ + + +S FG E+ RVLGGG+VPG+L+L+GGDPG+GKSTLLLQ++
Sbjct: 65 EISSIAR----------VSTTFG-EIDRVLGGGIVPGALMLLGGDPGIGKSTLLLQVSQK 113
Query: 231 IADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPR 290
+AD V+Y SGEES Q+ RA+R+ I TE L + + TD++ I+E+ + ++P
Sbjct: 114 VADT-----VGAVLYASGEESQLQLKLRAERLHINTERLQVIADTDLDHILEQAEAMTPS 168
Query: 291 ALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRV 350
L+IDSIQT+Y + + G + QV+ECTS LLRF K+ NIP ++ GHVTK G+IAGPR+
Sbjct: 169 LLVIDSIQTMYTGDIDAAPGSVSQVRECTSRLLRFCKERNIPTVIIGHVTKEGNIAGPRM 228
Query: 351 LEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQH 410
LEH+VD VLY EGE+ +R+LRS+KNRFGST E G+F M + GLQ +SNPS L+E+
Sbjct: 229 LEHMVDVVLYFEGERSYQFRILRSIKNRFGSTSETGIFAMVEEGLQELSNPSASLLAER- 287
Query: 411 SDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMKQA 468
SD E +G AV + ++G R L+E+Q+L V+ + R G +R ++++VL K+
Sbjct: 288 SDEE--SGSAVMIYLEGVRPILVEVQSLVVTTAFGMPRRTAIGYDLNRLIVLLAVLEKRC 345
Query: 469 GLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMV 528
G L +++NV+ G+ + E A DL++A AI S+ +P + +GE+GL G +R +
Sbjct: 346 GFTLGNKDVYVNVIGGLKVNEPACDLSMAVAIVSNLKNRIVPTDMVILGEVGLTGNVRSI 405
Query: 529 SRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVFT 581
R+E+R++ KLG++K I+P+ K + ++ G K+++E + +VF+
Sbjct: 406 PRIEQRINEAKKLGFKKFIIPEGNYKQIKD-NDSSIKIKGVKSIQEAMQLVFS 457
>gi|71902860|ref|YP_279663.1| DNA repair protein RadA [Streptococcus pyogenes MGAS6180]
gi|94987832|ref|YP_595933.1| DNA repair protein RadA [Streptococcus pyogenes MGAS9429]
gi|94991710|ref|YP_599809.1| DNA repair protein RadA [Streptococcus pyogenes MGAS2096]
gi|417857567|ref|ZP_12502626.1| DNA repair protein RadA [Streptococcus pyogenes HKU QMH11M0907901]
gi|71801955|gb|AAX71308.1| DNA repair protein [Streptococcus pyogenes MGAS6180]
gi|94541340|gb|ABF31389.1| DNA repair protein [Streptococcus pyogenes MGAS9429]
gi|94545218|gb|ABF35265.1| DNA repair protein RadA [Streptococcus pyogenes MGAS2096]
gi|387934522|gb|EIK42635.1| DNA repair protein RadA [Streptococcus pyogenes HKU QMH11M0907901]
Length = 453
Score = 337 bits (864), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 186/442 (42%), Positives = 269/442 (60%), Gaps = 22/442 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+ ++C +CGY ++ G C C + + + + V E+ +PV+L
Sbjct: 5 KATFICQECGYQSPKYLGRCPNCSAWSSFVEEVEVKEVKNARVSLAG-----EKSRPVKL 59
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
+V+ + + + + +E RVLGGG+VPGSL+LIGGDPG+GKSTLLLQ++ +A
Sbjct: 60 KDVDN----ISYHRTQTDM--SEFNRVLGGGVVPGSLILIGGDPGIGKSTLLLQVSTQLA 113
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+ V+Y SGEES EQI R++R+ E +LY+ T+++ I +++ + P L
Sbjct: 114 N------KGTVLYASGEESAEQIKLRSERLGDIDNEFYLYAETNMQAIRTEIENIKPDFL 167
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQT+ + G G + QV+E T+ L++ AK NI + GHVTK G +AGPR+LE
Sbjct: 168 IIDSIQTIMSPDITGVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTLAGPRMLE 227
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS++FL E+
Sbjct: 228 HMVDTVLYFEGERHHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDG 287
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
+ G AV V M+GSR L E+Q+L R G+ +R +I++VL K+ GL
Sbjct: 288 A---TGSAVVVTMEGSRPILAEVQSLVTPTVFGNARRTTTGLDFNRVSLIMAVLEKRCGL 344
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ +L GV L E A DLAVA AI SS+ E P AF+GEIGL GE+R V+R
Sbjct: 345 LLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTSPQEAFLGEIGLTGEIRRVTR 404
Query: 531 MEKRVSTVAKLGYRKCIVPKSA 552
+E+R++ AKLG+ K PK+A
Sbjct: 405 IEQRINEAAKLGFTKVYAPKNA 426
>gi|21909703|ref|NP_663971.1| DNA repair protein RadA [Streptococcus pyogenes MGAS315]
gi|28895086|ref|NP_801436.1| DNA repair protein RadA [Streptococcus pyogenes SSI-1]
gi|342165325|sp|P0DD78.1|RADA_STRP3 RecName: Full=DNA repair protein RadA homolog; AltName: Full=DNA
repair protein Sms homolog
gi|342165326|sp|P0DD79.1|RADA_STRPQ RecName: Full=DNA repair protein RadA homolog; AltName: Full=DNA
repair protein Sms homolog
gi|21903886|gb|AAM78774.1| putative DNA repair protein [Streptococcus pyogenes MGAS315]
gi|28810331|dbj|BAC63269.1| putative DNA repair protein [Streptococcus pyogenes SSI-1]
Length = 453
Score = 337 bits (864), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 186/442 (42%), Positives = 269/442 (60%), Gaps = 22/442 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+ ++C +CGY ++ G C C + + + + V E+ +PV+L
Sbjct: 5 KATFICQECGYQSPKYLGRCPNCSAWSSFVEEVEVKEVKNARVSLAG-----EKSRPVKL 59
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
+V+ + + + + +E RVLGGG+VPGSL+LIGGDPG+GKSTLLLQ++ +A
Sbjct: 60 KDVDN----ISYHRTQTDM--SEFNRVLGGGVVPGSLILIGGDPGIGKSTLLLQVSTQLA 113
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+ V+Y SGEES EQI R++R+ E +LY+ T+++ I +++ + P L
Sbjct: 114 N------KGTVLYASGEESAEQIKLRSERLGDIDNEFYLYAETNMQAIRTEIENIKPDFL 167
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQT+ + G G + QV+E T+ L++ AK NI + GHVTK G +AGPR+LE
Sbjct: 168 IIDSIQTIMSPDITGVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTLAGPRMLE 227
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS++FL E+
Sbjct: 228 HMVDTVLYFEGERHHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDG 287
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
+ G AV V M+GSR L E+Q+L R G+ +R +I++VL K+ GL
Sbjct: 288 A---TGSAVVVTMEGSRPILAEVQSLVTPTVFGNARRTTTGLDFNRVSLIMAVLEKRCGL 344
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ +L GV L E A DLAVA AI SS+ E P AF+GEIGL GE+R V+R
Sbjct: 345 LLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTSPQEAFLGEIGLTGEIRRVTR 404
Query: 531 MEKRVSTVAKLGYRKCIVPKSA 552
+E+R++ AKLG+ K PK+A
Sbjct: 405 IEQRINEAAKLGFTKVYAPKNA 426
>gi|257464501|ref|ZP_05628872.1| DNA repair protein RadA [Actinobacillus minor 202]
gi|257450161|gb|EEV24204.1| DNA repair protein RadA [Actinobacillus minor 202]
Length = 459
Score = 337 bits (864), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 191/478 (39%), Positives = 284/478 (59%), Gaps = 30/478 (6%)
Query: 109 GKANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQR--TWLPQKPEE 166
KA +T +VC+DCG +W G C+ C S T+ + E R + + +
Sbjct: 2 AKAPKTAYVCNDCGAEYSKWLGQCKECFSWNTISEVRLISAKEAKKNDRFSGYAGETSGK 61
Query: 167 VQPVRLLEVNKGMKQLDWRIPL--SGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLL 224
VQ + + + + +P SG + E+ RVLGGG+VPGS +LIGG PG GKSTLL
Sbjct: 62 VQALSEISLQE--------VPRFSSGFY--ELDRVLGGGVVPGSAILIGGHPGAGKSTLL 111
Query: 225 LQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKV 284
LQ+ L + P +YV+GEES++Q+ RA+R+ + TE L + S T +E I
Sbjct: 112 LQVMC------GLSKEIPTLYVTGEESLQQVAMRANRLGLPTEHLKMLSETSVEHICNIA 165
Query: 285 QPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGD 344
P+ ++IDSIQ ++L + S G + QV+EC S L R+AK + +++ GHVTK G
Sbjct: 166 DQEKPKIMVIDSIQVMHLADIQSSPGSVSQVRECASFLTRYAKTRQVAIIMVGHVTKDGT 225
Query: 345 IAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKI 404
+AGP+VLEH +DA L +EGE S YR LRS KNRFG+ +ELGVF M++ GL+ V NPS I
Sbjct: 226 LAGPKVLEHAIDASLLLEGESDSRYRTLRSQKNRFGAVNELGVFAMTEQGLREVKNPSAI 285
Query: 405 FLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVS---RHVNGIQASRADMII 461
FLS E ++G +V V+ +G+R L+EIQAL V S ++ R G+ +R +++
Sbjct: 286 FLSRSE---ELVSGSSVVVLWEGTRPLLVEIQAL-VDHSMLANPRRVAVGLDHNRLSLLL 341
Query: 462 SVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGL 521
+VL + GL++ + +F+NVV GV +TET+ DL + A+ SSF P+P + GE+GL
Sbjct: 342 AVLHRHGGLQMSDQDVFVNVVGGVKVTETSADLTLILALISSFRNRPLPQDLVIFGEVGL 401
Query: 522 GGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVV 579
GE+R V ++R+S AK G+++ IVP A G ME +G K L E ++++
Sbjct: 402 AGEIRPVPSGQERISEAAKHGFKRAIVPFGNMPKKAIKG---MEVMGVKKLSEALDIL 456
>gi|403514365|ref|YP_006655185.1| DNA repair protein RadA [Lactobacillus helveticus R0052]
gi|403079803|gb|AFR21381.1| DNA repair protein RadA [Lactobacillus helveticus R0052]
Length = 458
Score = 337 bits (864), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 189/471 (40%), Positives = 277/471 (58%), Gaps = 21/471 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T + C CGY + G C C + ++ + + L QK +PV L
Sbjct: 5 KTQYKCRSCGYISASYLGRCPNCGAWNQFEKETEEVQKRSTKATASRLIQKTGLNEPVHL 64
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
+K + + RIP E+ RVLGGG+VPGSLVLIGGDPG+GKSTL+L + +
Sbjct: 65 ---DKIKAEKEERIPTKS---EELNRVLGGGIVPGSLVLIGGDPGIGKSTLMLHIMS--- 115
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
DL E V+YVSGEES QI RADR+ + + LY TD+ DI E++ + P +
Sbjct: 116 ---DLAEKYKVLYVSGEESANQIKLRADRLGVGQSNMLLYPETDMHDIREQINDVKPDFV 172
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
+IDSIQT+ + G QV+E TS L++ AK I V + GHVTK G IAGP++LE
Sbjct: 173 VIDSIQTMNEPSLDSMTGSASQVREVTSELMKIAKMDAITVFVIGHVTKEGAIAGPKILE 232
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EG++ +YR+L SVKNRFG+ +E+G+FEM GL+ V+NPS IFL ++ +
Sbjct: 233 HMVDTVLYFEGDEHHTYRILHSVKNRFGAANEIGMFEMENEGLREVTNPSSIFLDQRLPN 292
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMKQAGL 470
S G AV V ++G+R L EIQAL + R +GI ++A ++++VL K+ L
Sbjct: 293 S---TGSAVVVSLEGTRPLLAEIQALVTPTAFGYAKRTTSGISFNKASLLLAVLEKRGNL 349
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ ++L G+ L E A DLA+A ++ SS+ + I F+GE+GL GE+R V +
Sbjct: 350 MLQNQDVYLTATGGIKLNEPAIDLAIAMSVASSYTDKEISPTDCFVGEVGLTGEVRSVDK 409
Query: 531 MEKRVSTVAKLGYRKCIVPK-SAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+E RV AK+G+++ +PK + +SL G +E I ++ + + +VF
Sbjct: 410 IEARVKEAAKVGFKRIFIPKHNMYQSLTENG---IEVIPVASIPQALELVF 457
>gi|390954123|ref|YP_006417881.1| DNA repair protein RadA [Aequorivita sublithincola DSM 14238]
gi|390420109|gb|AFL80866.1| DNA repair protein RadA [Aequorivita sublithincola DSM 14238]
Length = 453
Score = 337 bits (864), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 180/447 (40%), Positives = 276/447 (61%), Gaps = 27/447 (6%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
++ + C +CG +W G C +C+ T+ ++++ V ++ +P R+
Sbjct: 5 KSTFFCQNCGAQFDKWQGQCNSCKEWNTIAEEVIQKAEK--VSWKSSENTSKRVSKPQRI 62
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
E++ Q + R+ NE+ RVLGGGLVPGSL L+GG+PG+GKSTL+LQ+A
Sbjct: 63 SEIST---QSEARLNTKN---NELNRVLGGGLVPGSLTLLGGEPGIGKSTLMLQIA---- 112
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
L P +YVSGEES +QI RA+R+ +E F+ + T ++I ++ + P +
Sbjct: 113 ----LQLPYKTLYVSGEESAQQIKMRAERIQPISENCFILTETKTQNIFRIIEEIEPDIV 168
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
+IDSIQT++ + +AG + Q++E + L++FAK+T PV+L GH+TK G+IAGP++LE
Sbjct: 169 VIDSIQTLHTDAIESTAGSISQIREAAAELIKFAKETATPVILIGHITKDGNIAGPKILE 228
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VL EG++ YR+LR+ KNRFGST+ELG++EM GL+ VSNPS+I +S+ D
Sbjct: 229 HMVDTVLQFEGDRNHIYRILRANKNRFGSTNELGIYEMQGSGLREVSNPSEILISKNDED 288
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
L+G A++ ++G R +IEIQAL S T R G A R +MI++VL K+AG
Sbjct: 289 ---LSGTAISATLEGMRPLMIEIQALVSSAVYGTPQRSATGYNAKRLNMILAVLEKRAGF 345
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
KL +FLNV G+ + + A DLAV AA+ SS ++ I + F E+GL GE+R V+R
Sbjct: 346 KLGAKDVFLNVTGGITVDDPAIDLAVVAAVLSSNIDIAIDKRLCFAAEVGLAGEVRPVTR 405
Query: 531 MEKRVSTVAKLGY------RKCIVPKS 551
+E+R+ KLG+ + C +PK+
Sbjct: 406 VEQRILEAEKLGFTSIVISKYCKIPKN 432
>gi|317056978|ref|YP_004105445.1| DNA repair protein RadA [Ruminococcus albus 7]
gi|315449247|gb|ADU22811.1| DNA repair protein RadA [Ruminococcus albus 7]
Length = 458
Score = 337 bits (864), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 189/464 (40%), Positives = 272/464 (58%), Gaps = 18/464 (3%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
++ +VCS+CG+ +W G C C T E E V RT + V+ +
Sbjct: 5 KSAYVCSNCGFEASKWNGKCPECGEWNTF------EEVEIQVSARTAGKSRGSAVKDISD 58
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
+N G R NE+ RVLGGGLV GSLVL+GG+PG+GKST+LLQ+ +
Sbjct: 59 SILNIGAVDASVREIRYDTGMNELNRVLGGGLVKGSLVLLGGEPGIGKSTMLLQICQTMG 118
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
D H ++YVSGEES QI RADR+ + E L+L + TD E I + P +
Sbjct: 119 DDH------TILYVSGEESARQIKLRADRLGVDNENLYLLAETDAESICAAIVKEKPEIV 172
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQT+ + G++ + G + QV+ECT+ +R AK IP+ + GHV K G IAGP+V+E
Sbjct: 173 IIDSIQTMSISGISSAQGSVTQVRECTNMFMRTAKSEEIPIFIVGHVNKDGAIAGPKVME 232
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
HIVD VLY EG++ +YR+LR+VKNRFGST+E+GVFEM+ GL V NPS + L + +
Sbjct: 233 HIVDCVLYFEGQRNMTYRILRAVKNRFGSTNEIGVFEMADAGLLEVDNPSMLMLEGRPLN 292
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTV--SRHVNGIQASRADMIISVLMKQAGL 470
++G VA +M+GSR + E+QAL ST R G R +I++VL K+ G
Sbjct: 293 ---VSGSCVACVMEGSRPIMAEVQALVSKSSTSQPKRTATGFDYYRMSIILAVLEKRLGY 349
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
+F+N+V G+ L +TA DL VA A+ SS + + +GEIGLGGELR ++
Sbjct: 350 FFGGLDVFINIVGGLKLDDTAADLTVAMALYSSVTDKVVDEKTIALGEIGLGGELRNITH 409
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKE 574
E+R+ ++G+ K I+P A K + + ++ IG +++KE
Sbjct: 410 AEQRIQEAERMGFEKVIIPYYAAKKINAAKY-GIKVIGARSIKE 452
>gi|167761737|ref|ZP_02433864.1| hypothetical protein BACSTE_00075 [Bacteroides stercoris ATCC
43183]
gi|167700373|gb|EDS16952.1| DNA repair protein RadA [Bacteroides stercoris ATCC 43183]
Length = 455
Score = 337 bits (864), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 192/470 (40%), Positives = 280/470 (59%), Gaps = 22/470 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T +VCS+CG +W G C +C G Y + V +R + + +PV L
Sbjct: 5 KTVYVCSNCGQESPKWVGKCPSC---GAWNTYVEEIVRKETVNKRPVSGMETAKAKPVTL 61
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
E+ + P L E+ RVLGGGLV GSLVLIGG+PG+GKSTL+LQ I
Sbjct: 62 DEIAADDE------PRIDLHDAELNRVLGGGLVQGSLVLIGGEPGIGKSTLVLQTILRIP 115
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+ ++Y+SGEES Q+ RADR+ + + + T +E I ++ P +
Sbjct: 116 EKR-------ILYISGEESARQLKLRADRLSGTSADCLIVCETSLEQIYVHIKNTRPDLV 168
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQT+ + S G + QV+EC++++LRFAK+T+ V+L GH+ K G IAGP+VLE
Sbjct: 169 IIDSIQTISTETLESSPGSIAQVRECSASILRFAKETHTAVILIGHINKEGSIAGPKVLE 228
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
HIVD VL EG++ YR+LRS+KNRFGST ELG++EM Q GL+ VSNPS++ LS+ H
Sbjct: 229 HIVDTVLQFEGDQHYMYRILRSIKNRFGSTAELGIYEMRQDGLRQVSNPSELLLSQDH-- 286
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
E ++G+A+A ++G R FLIE QAL S R G R +M+++VL K+ G
Sbjct: 287 -EGMSGIAIASAIEGIRPFLIETQALVSSAVYGNPQRSATGFDIRRMNMLLAVLEKRVGF 345
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
KL + +FLN+ G+ + + A DLAV +AI SS ++ I I GEIGL GE+R V+R
Sbjct: 346 KLAQKDVFLNIAGGLKVNDPAIDLAVISAILSSNMDTAIEPEICMAGEIGLSGEIRPVNR 405
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+E+R+ KLG+++ I+PK + L ++E I + ++E +F
Sbjct: 406 IEQRIGEAEKLGFKRFILPKYNLQGLNASKL-KIELIPVRKVEEAFRALF 454
>gi|291529853|emb|CBK95438.1| DNA repair protein RadA [Eubacterium siraeum 70/3]
Length = 465
Score = 337 bits (864), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 196/480 (40%), Positives = 279/480 (58%), Gaps = 42/480 (8%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTM-------KRYSAGESDEG---PVVQRTWLP 161
+++ ++CS+CG +W G C AC + T+ K + S G P+ L
Sbjct: 4 SKSVYICSECGQEYPKWSGRCNACGAWNTLEETLIQPKSHGLARSTGGGRLPLSSINNLS 63
Query: 162 QKPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKS 221
E GM +LD RVLGGGLV GSLVL+GGDPG+GKS
Sbjct: 64 FSDET-------RYKTGMSELD--------------RVLGGGLVKGSLVLLGGDPGIGKS 102
Query: 222 TLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIV 281
TLLLQ+ +A + V+Y+SGEES QI RADR+ +A++ L++ + TD + I+
Sbjct: 103 TLLLQICGCLA------QDKTVLYISGEESERQIKLRADRLGVASDGLYISACTDCDTII 156
Query: 282 EKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTK 341
E V+ P +IIDSIQT+ L + G L+QV+ECTSA ++ AK + V L GHV K
Sbjct: 157 EGVRENKPDVVIIDSIQTMQLTELQSVPGSLVQVRECTSAFMQMAKSLEVAVFLVGHVNK 216
Query: 342 SGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNP 401
G IAGP+VLEHIVD VLY EG+K SYR+LR+ KNRFGST+E+GVFEM GL+ V NP
Sbjct: 217 DGGIAGPKVLEHIVDTVLYFEGDKQLSYRILRAAKNRFGSTNEIGVFEMQDKGLEQVENP 276
Query: 402 SKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADM 459
S + L + + ++G+ V ++G+R L E+QAL S S R G SR +
Sbjct: 277 SAMLLLGRPAG---VSGITVLCTVEGTRPILAEVQALVSKTSFSAPRRMTTGFDYSRLCV 333
Query: 460 IISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEI 519
+++VL K+ G +++NV+ G+ + E A DLA+A A+ S + PI + +A GE+
Sbjct: 334 LLAVLEKRTGYNFGGYDVYINVIGGLKIDEPASDLAIALALYSGLRDIPIGDDVAMFGEV 393
Query: 520 GLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVV 579
GLGGE+R VS + +RV A++G+ KCIVPKS+ K+L + G NL++ V+
Sbjct: 394 GLGGEIRAVSHIRERVREAARMGFSKCIVPKSSLKNLDKSENYGISIYGVANLQQAFKVL 453
>gi|255530041|ref|YP_003090413.1| DNA repair protein RadA [Pedobacter heparinus DSM 2366]
gi|255343025|gb|ACU02351.1| DNA repair protein RadA [Pedobacter heparinus DSM 2366]
Length = 458
Score = 337 bits (863), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 181/481 (37%), Positives = 284/481 (59%), Gaps = 39/481 (8%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTM---------KRYSAGESDEGPVVQRTWLPQ 162
++ + C CGY +W G C +C T + A ++ G QR P
Sbjct: 4 TKSAYFCQSCGYESAKWLGKCPSCNEWNTFVEEVIEKAAAKVPAWKTSTG--TQRVSKPN 61
Query: 163 KPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKST 222
K + +Q + + G +LD RVLGGGLV GS++LIGG+PG+GKST
Sbjct: 62 KVDNIQSITEERILTGDTELD--------------RVLGGGLVAGSVILIGGEPGIGKST 107
Query: 223 LLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIA-TEELFLYSSTDIEDIV 281
L+LQ+A I+ ++YVSGEES +QI RA+R+ + + ++ + T ++I
Sbjct: 108 LMLQLALNISG-------KKILYVSGEESEQQIKMRAERITVQPMADCYILTETSTQNIF 160
Query: 282 EKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTK 341
++++ L P +++DSIQT++ + + G + QV+ECT+ LLRFAK+T+ PV L GH+TK
Sbjct: 161 KQIEELEPDIVVVDSIQTLHSAHIESTPGSVSQVRECTAELLRFAKETDTPVFLIGHITK 220
Query: 342 SGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNP 401
G IAGP++LEH+VD VL EG++ YR+LRS+KNRFG+ ELG++ M GL+ VSNP
Sbjct: 221 DGTIAGPKILEHMVDTVLQFEGDRHHVYRILRSIKNRFGAAAELGIYAMHSSGLRQVSNP 280
Query: 402 SKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADM 459
S+I LS++ E L+G+A++ ++G+R LIE QAL + + T R NG R +M
Sbjct: 281 SEILLSQR---DEELSGIAISATLEGARPMLIETQALVSAAAYGTPQRSSNGFDTKRMNM 337
Query: 460 IISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEI 519
+++VL K+ G +L +FLN+ G+ + + A DLA+ AI SS + I + I F E+
Sbjct: 338 LLAVLEKRCGFRLSTRDVFLNIAGGIKVEDPAIDLAILVAIISSHEDIFISSKICFAAEV 397
Query: 520 GLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVV 579
GL GE+R V+R+E+R+S KLG+ + + K L + ++E I +++V + +
Sbjct: 398 GLSGEIRAVNRIEQRISEAEKLGFERIFISNYNRKGLVVERY-KIELIAVSKIEDVFSQL 456
Query: 580 F 580
F
Sbjct: 457 F 457
>gi|149277321|ref|ZP_01883463.1| predicted repair protein [Pedobacter sp. BAL39]
gi|149232198|gb|EDM37575.1| predicted repair protein [Pedobacter sp. BAL39]
Length = 458
Score = 337 bits (863), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 185/481 (38%), Positives = 286/481 (59%), Gaps = 39/481 (8%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTM---------KRYSAGESDEGPVVQRTWLPQ 162
+++ + C CGY +W G C +C S T + A ++ G R P
Sbjct: 4 SKSAYFCQSCGYESAKWLGKCPSCNSWNTFVEEVIEKGNAKVPAWKTGAGN--SRVSTPS 61
Query: 163 KPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKST 222
K E++ + + R+P L E+ RVLGGGLVPGS+ LIGG+PG+GKST
Sbjct: 62 KVEDIVSIT-----------EERVPTGDL---ELDRVLGGGLVPGSVTLIGGEPGIGKST 107
Query: 223 LLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATE-ELFLYSSTDIEDIV 281
L+LQ+A I V+Y+SGEES +QI RA+R+ + ++ + T ++I
Sbjct: 108 LMLQLALNIVG-------KKVLYISGEESEQQIKMRAERITDQPKASCYILTETSTQNIF 160
Query: 282 EKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTK 341
++V+ L P LI+DSIQT++ + + G + QV+ECT+ LL+FAK+T+ PV L GH+TK
Sbjct: 161 KQVELLEPEILIVDSIQTLHSAHIESTPGSVSQVRECTAELLKFAKETDTPVFLIGHITK 220
Query: 342 SGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNP 401
G IAGP++LEH+VD VL EG++ YR+LRS+KNRFG+ ELG++ M GL+ VSNP
Sbjct: 221 DGTIAGPKILEHMVDTVLQFEGDRHHVYRILRSIKNRFGAAAELGIYAMHGSGLRQVSNP 280
Query: 402 SKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADM 459
S+I LS++ E L+G+A++ ++G+R LIE QAL + + T R NG R +M
Sbjct: 281 SEILLSQR---DEELSGIAISATLEGARPMLIETQALVSTAAYGTPQRSANGFDTKRMNM 337
Query: 460 IISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEI 519
+++VL K+ G +L +FLN+ G+ + + A DLA+ A+ SS + I + I F E+
Sbjct: 338 LLAVLEKRCGFRLSTRDVFLNIAGGIKVEDPAIDLAILVALISSHEDISISSKICFAAEV 397
Query: 520 GLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVV 579
GL GE+R V+R+E+R+S KLG+ + + K L T F ++E +++V +++
Sbjct: 398 GLSGEIRAVNRIEQRISEAEKLGFERIFISNYNLKGLQTERF-KIELTAVSKIEDVFSIL 456
Query: 580 F 580
F
Sbjct: 457 F 457
>gi|291556433|emb|CBL33550.1| DNA repair protein RadA [Eubacterium siraeum V10Sc8a]
Length = 465
Score = 337 bits (863), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 196/484 (40%), Positives = 281/484 (58%), Gaps = 50/484 (10%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQP-V 170
+++ ++CS+CG +W G C AC + W + +QP
Sbjct: 4 SKSVYICSECGQEYPKWSGRCNACGA---------------------WNTLEETLIQPKS 42
Query: 171 RLLEVNKGMKQLDWRIPLSGLFG-------------NEVARVLGGGLVPGSLVLIGGDPG 217
L N G R+PLS + +E+ RVLGGGLV GSLVL+GGDPG
Sbjct: 43 HGLAKNTG----GGRLPLSSINNLSFSDETRYETGMSELDRVLGGGLVKGSLVLLGGDPG 98
Query: 218 VGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDI 277
+GKSTLLLQ+ +A + V+Y+SGEES QI RADR+ +A++ L++ + TD
Sbjct: 99 IGKSTLLLQICGCLA------QDKTVLYISGEESERQIKLRADRLGVASDGLYISACTDC 152
Query: 278 EDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAG 337
+ I+E V+ P +IIDSIQT+ L + G L+QV+ECTSA ++ AK + V L G
Sbjct: 153 DTIIEGVRENKPDVVIIDSIQTMQLTELQSVPGSLVQVRECTSAFMQMAKSLEVAVFLVG 212
Query: 338 HVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQA 397
HV K G IAGP+VLEHIVD VLY EG+K SYR+LR+ KNRFGST+E+GVFEM GL+
Sbjct: 213 HVNKDGGIAGPKVLEHIVDTVLYFEGDKQLSYRILRAAKNRFGSTNEIGVFEMQDKGLEQ 272
Query: 398 VSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQAS 455
V NPS + L + + ++G+ V ++G+R L E+QAL S S R G S
Sbjct: 273 VENPSAMLLLGRPAG---VSGITVLCTVEGTRPILAEVQALVGKTSFSAPRRMTTGFDYS 329
Query: 456 RADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAF 515
R ++++VL K+ G +++NV+ G+ + E A DLA+A A+ S + PI + +A
Sbjct: 330 RLCVLLAVLEKRTGYNFGGYDVYINVIGGLKIDEPASDLAIALALYSGLRDIPIGDDVAM 389
Query: 516 IGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEV 575
GE+GLGGE+R VS + +RV A++G+ KCIVPKS+ K+L + G NL++
Sbjct: 390 FGEVGLGGEIRAVSHIRERVREAARMGFSKCIVPKSSLKNLDKSENYGISIYGVANLQQS 449
Query: 576 INVV 579
V+
Sbjct: 450 FKVL 453
>gi|407692598|ref|YP_006817387.1| DNA repair protein RadA [Actinobacillus suis H91-0380]
gi|407388655|gb|AFU19148.1| DNA repair protein RadA [Actinobacillus suis H91-0380]
Length = 459
Score = 337 bits (863), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 189/476 (39%), Positives = 286/476 (60%), Gaps = 26/476 (5%)
Query: 109 GKANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQR--TWLPQKPEE 166
KA +T +VC+DCG +W G C+ C++ T+ S E R + + +
Sbjct: 2 AKAPKTAYVCNDCGAEYSRWMGQCKECKAWNTISEVRLISSKESSKNDRFSGYAGETSGK 61
Query: 167 VQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQ 226
VQ + + + + +P NE+ RVLGGG+VPGS +LIGG PG GKSTLLLQ
Sbjct: 62 VQTLSEISLQE--------VPRFSSGFNELDRVLGGGVVPGSAILIGGHPGAGKSTLLLQ 113
Query: 227 MAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQP 286
+ L + P +YV+GEES++Q+ RA+R+ + T+ L + S T +E I
Sbjct: 114 VMC------GLSKMLPTLYVTGEESLQQVAMRANRLGLPTDNLKMLSETSVEHICNIADQ 167
Query: 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIA 346
P+ ++IDSIQ ++L + S G + QV+EC S L R+AK + +++ GHVTK G +A
Sbjct: 168 EKPKLMVIDSIQVMHLSDIQSSPGSVAQVRECASFLTRYAKTRQVAIIMVGHVTKDGTLA 227
Query: 347 GPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFL 406
GP+VLEH +DA L +EGE S +R LRS KNRFG+ +ELGVF M++ GL+ V NPS IFL
Sbjct: 228 GPKVLEHAIDASLLLEGESDSRFRTLRSQKNRFGAVNELGVFAMTEQGLREVKNPSAIFL 287
Query: 407 SEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVS---RHVNGIQASRADMIISV 463
S SD E ++G +V V+ +G+R L+EIQAL V S ++ R G+ +R ++++V
Sbjct: 288 S--RSD-ELVSGSSVMVLWEGTRPLLVEIQAL-VDHSMLANPRRVAVGLDHNRLSLLLAV 343
Query: 464 LMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGG 523
L + GL++ + +F+NVV GV +TET+ DLA+ A+ SSF P+P + GE+GL G
Sbjct: 344 LHRHGGLQMSDQDVFVNVVGGVKVTETSADLALILALISSFRNRPLPQDLVIFGEVGLAG 403
Query: 524 ELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVV 579
E+R V ++R+S AK G+++ IVP ++ + ME IG K L + ++ +
Sbjct: 404 EIRPVPSGQERISEAAKHGFKRAIVPFG---NMPKKPIKDMEVIGVKKLSDALDAL 456
>gi|419795899|ref|ZP_14321479.1| DNA repair protein RadA [Neisseria sicca VK64]
gi|385700112|gb|EIG30369.1| DNA repair protein RadA [Neisseria sicca VK64]
Length = 476
Score = 337 bits (863), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 194/477 (40%), Positives = 280/477 (58%), Gaps = 32/477 (6%)
Query: 109 GKANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKP--EE 166
KA +T + C++CG T +W G C C T++ A + Q +W +
Sbjct: 19 AKAPKTIYQCTECGGTSPKWQGKCPHCGEWNTLQESLAAPEPKNARFQ-SWAADTSTVQS 77
Query: 167 VQPVRLLEVNK---GMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTL 223
+ V EV + GM +LD RVLGGGLV G+++L+GGDPG+GKSTL
Sbjct: 78 LSAVTATEVPRNPTGMGELD--------------RVLGGGLVDGAVILLGGDPGIGKSTL 123
Query: 224 LLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEK 283
LLQ A +A + V+YVSGEES +Q+ RA R+ + TE + L + +E I
Sbjct: 124 LLQTIAKMA------QSRKVLYVSGEESAQQVALRAQRLELPTEGVNLLAEIRMEAIQAA 177
Query: 284 VQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSG 343
++ P ++IDSIQT+Y + + G + QV+EC + L R AK+ I ++L GHVTK G
Sbjct: 178 LKQHQPEVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRMAKQMGIAMILVGHVTKDG 237
Query: 344 DIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSK 403
IAGPRVLEH+VD VLY EG++ S+YR++R++KNRFG+ +ELGVF M++ GL+ VSNPS
Sbjct: 238 AIAGPRVLEHMVDTVLYFEGDQHSNYRMIRAIKNRFGAANELGVFAMTENGLKGVSNPSA 297
Query: 404 IFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMII 461
IFL+ D+ G V V +GSR L+EIQAL G T R G++ +R M++
Sbjct: 298 IFLASYRDDT---PGSCVLVTQEGSRPLLVEIQALVDDAHGFTPKRLTVGLEQNRLAMLL 354
Query: 462 SVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGL 521
+VL + G+ + +FLN V GV + E A DLAV A+ SSF P+P + GEIGL
Sbjct: 355 AVLNRHGGIACFDQDVFLNAVGGVKIGEPAADLAVILAMLSSFRNRPLPEKMVAFGEIGL 414
Query: 522 GGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINV 578
GE+R V+R ++R+ KLG+++ IVPK A F ++ G +L+E I++
Sbjct: 415 SGEVRPVARGQERLKEAEKLGFKRAIVPK-ANMPRNEKEFPNLKIFGVSSLQEAIDI 470
>gi|375148990|ref|YP_005011431.1| DNA repair protein RadA [Niastella koreensis GR20-10]
gi|361063036|gb|AEW02028.1| DNA repair protein RadA [Niastella koreensis GR20-10]
Length = 458
Score = 337 bits (863), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 180/470 (38%), Positives = 278/470 (59%), Gaps = 19/470 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T + CS+CGY +W G C +C GT + + V + EE + R
Sbjct: 5 KTAFFCSNCGYESAKWLGKCPSC---GTWNTFVEEVISKPSVKKENGWDDYHEETKSTRT 61
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
+ ++ RI S E+ RVLGGG+VPGS+VLI G+PG+GKSTL LQ +
Sbjct: 62 IPLSSITSSEQVRITTSDA---ELNRVLGGGIVPGSIVLIAGEPGIGKSTLFLQNGLQLQ 118
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+ V+Y+SGEES +QI RADR+ I + +L + T + I ++++ L P +
Sbjct: 119 N-------KTVLYISGEESEQQIKMRADRLNIKNDNFYLLTETVTQTIFQEIKKLKPHLV 171
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
I+DSIQT+ + S G + Q++E + RFAK+TN PV L GH+TK G IAGP++LE
Sbjct: 172 IVDSIQTIQSPYIDSSPGSISQIRESAAEFQRFAKETNTPVFLIGHITKDGSIAGPKILE 231
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VL EG++ +YR+LR++KNRFGST ELG++EM+ G++ V+NPS+I ++ +
Sbjct: 232 HMVDTVLQFEGDRHYAYRILRTIKNRFGSTSELGIYEMTGGGMRVVNNPSEILMTPKE-- 289
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
+ L+G+A+A ++G R LIE+QAL T R V+G R ++++VL K+ G
Sbjct: 290 -DRLSGIAIAATIEGMRPLLIEVQALVTQSVYGTPQRTVSGFDLRRLQLLLAVLEKRGGF 348
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
+FLN+ G+ + + + DLAV A+ SS+ + P+P + F GE+GL GE+R V R
Sbjct: 349 HFGVKDVFLNIAGGLKVEDPSIDLAVLCALLSSYEDVPLPQHVCFAGEVGLSGEVRAVHR 408
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+E+R++ KLG+ K IV + +KS+ +E I ++EV +F
Sbjct: 409 VEQRIAEAEKLGFEKIIVSRYGQKSIGKQS-GNIEVISMGRVEEVYQYLF 457
>gi|16331082|ref|NP_441810.1| DNA repair protein RadA [Synechocystis sp. PCC 6803]
gi|383322825|ref|YP_005383678.1| sms protein [Synechocystis sp. PCC 6803 substr. GT-I]
gi|383325994|ref|YP_005386847.1| sms protein [Synechocystis sp. PCC 6803 substr. PCC-P]
gi|383491878|ref|YP_005409554.1| sms protein [Synechocystis sp. PCC 6803 substr. PCC-N]
gi|384437146|ref|YP_005651870.1| sms protein [Synechocystis sp. PCC 6803]
gi|451815239|ref|YP_007451691.1| sms protein [Synechocystis sp. PCC 6803]
gi|2500055|sp|P74391.1|RADA_SYNY3 RecName: Full=DNA repair protein RadA homolog; AltName: Full=DNA
repair protein Sms homolog
gi|1653575|dbj|BAA18488.1| sms protein [Synechocystis sp. PCC 6803]
gi|339274178|dbj|BAK50665.1| sms protein [Synechocystis sp. PCC 6803]
gi|359272144|dbj|BAL29663.1| sms protein [Synechocystis sp. PCC 6803 substr. GT-I]
gi|359275314|dbj|BAL32832.1| sms protein [Synechocystis sp. PCC 6803 substr. PCC-N]
gi|359278484|dbj|BAL36001.1| sms protein [Synechocystis sp. PCC 6803 substr. PCC-P]
gi|451781208|gb|AGF52177.1| sms protein [Synechocystis sp. PCC 6803]
Length = 505
Score = 337 bits (863), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 192/462 (41%), Positives = 284/462 (61%), Gaps = 36/462 (7%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKR-----YSAGESDEGPVVQRTWLPQKPEEV 167
RT +VCS CG QW+G C C G+++ S+G + Q++ K +
Sbjct: 5 RTKFVCSACGADHAQWFGRCPKCHEYGSLQEEIVNAVSSGTNHRSLGAQKSR-SSKVKTG 63
Query: 168 QPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQM 227
QP L ++ ++ R LSG E+ RVLGGG+VPG+L+LIGGDPG+GKSTLLLQ+
Sbjct: 64 QPQAALTFSQIRQENQGRF-LSGY--GELDRVLGGGIVPGALILIGGDPGIGKSTLLLQV 120
Query: 228 AAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATE-----------------ELF 270
A +A ++YVS EES +QI RA R+ I LF
Sbjct: 121 AFQLAT-----RLPRILYVSAEESGQQIKLRATRLGITQTVEPSQAQDGINNLAHDGNLF 175
Query: 271 LYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTN 330
+ T+++DI+ +++ L P+ IIDSIQ +Y ++ + G + QV+ECT L++ AK+ +
Sbjct: 176 VLPETNLDDILRELEALQPQVAIIDSIQNLYFPALSSAPGSVSQVRECTGLLMQLAKRDH 235
Query: 331 IPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEM 390
I + + GHVTK G IAGP+VLEH+VD VLY +G++F+S+RLLRSVKNRFG+T E+G+FEM
Sbjct: 236 ISLFIVGHVTKEGAIAGPKVLEHLVDTVLYFQGDRFASHRLLRSVKNRFGATQEIGIFEM 295
Query: 391 SQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVS--RH 448
Q GLQ V NPS++FL S EF++G A+ V +G+R ++E+QAL S S R
Sbjct: 296 VQSGLQEVLNPSQLFLG---SREEFMSGTAITVACEGTRPLVVELQALVSPTSYASPRRS 352
Query: 449 VNGIQASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFP 508
G+ +R +++VL K+ G+ L + +L+V G+ + E A DLA+A A+ +SF +
Sbjct: 353 TTGVDYNRLLQVLAVLEKRLGVPLSKLDAYLSVAGGLEVEEPAVDLAMAIALVASFRDRV 412
Query: 509 IPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPK 550
+ + +GEIGLGG++R VS++E R+ AKLG++K IVPK
Sbjct: 413 VDPTMIILGEIGLGGQIRPVSQLEIRLKEAAKLGFKKAIVPK 454
>gi|251780429|ref|ZP_04823349.1| DNA repair protein RadA [Clostridium botulinum E1 str. 'BoNT E
Beluga']
gi|243084744|gb|EES50634.1| DNA repair protein RadA [Clostridium botulinum E1 str. 'BoNT E
Beluga']
Length = 455
Score = 337 bits (863), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 194/473 (41%), Positives = 280/473 (59%), Gaps = 27/473 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
++ ++C CGY +W G C +C + T ++ D+ VV + QP +
Sbjct: 5 KSTYICQQCGYEAPKWLGKCPSCNNWNT---FNEEIKDDNKVVTSLKANNIVQNNQPKNI 61
Query: 173 LEVNKGMKQ-LDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAII 231
++ G K+ D I E+ RVLGGGLV GSL LI GDPG+GKSTLLLQ A I
Sbjct: 62 RDIKSGEKERYDTGI-------RELNRVLGGGLVKGSLTLISGDPGIGKSTLLLQTANNI 114
Query: 232 ADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRA 291
A + V+YVSGEES EQI R DR+ + +E LF+ S T+++ I ++ ++P
Sbjct: 115 ALKY-----GKVLYVSGEESEEQIKIRGDRLGVNSENLFIISETNLDAISIYIEQINPNF 169
Query: 292 LIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVL 351
+IIDSIQTV+ V+ + G + QVKEC++ ++R K NIP L HVTK G++AGPRVL
Sbjct: 170 VIIDSIQTVFKESVSSAPGSVSQVKECSNTIMRICKGKNIPFFLVAHVTKQGELAGPRVL 229
Query: 352 EHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHS 411
EH+VD VLY EGE+ YR+LR++KNRFG+T E+GVFEM Q GL V +PSKIFL + +
Sbjct: 230 EHMVDTVLYFEGERTEEYRILRTMKNRFGTTSEIGVFEMQQEGLIEVFDPSKIFLEDTSA 289
Query: 412 DSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVLMKQAG 469
+ E G V +M+G+R LIEIQAL R GI R +I++VL K+
Sbjct: 290 NQE---GSVVVGVMEGTRPILIEIQALVSETKAPMPRRTAVGIDNQRLSLILAVLEKKLK 346
Query: 470 LKLQENAIFLNVVSGVALTETAGDLAVAAAICSSF--LEFPIPNGIAFIGEIGLGGELRM 527
+ +++NVV G+ + T+ DL +A A+ SS EF + + +GE+GL GE+R
Sbjct: 347 VFFYNKDVYVNVVGGLNIDGTSADLGLALALISSAKSKEFKLDKTL-IVGEVGLTGEIRP 405
Query: 528 VSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+S E+ V KLG++ I+P ++L + E ++ IG ++L E IN +F
Sbjct: 406 ISSAERLVKEAEKLGFKNVIIPA---RNLDKIKTEDIKVIGIRHLIEAINKIF 455
>gi|167761664|ref|ZP_02433791.1| hypothetical protein CLOSCI_04076 [Clostridium scindens ATCC 35704]
gi|167660807|gb|EDS04937.1| DNA repair protein RadA [Clostridium scindens ATCC 35704]
Length = 452
Score = 337 bits (863), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 189/480 (39%), Positives = 289/480 (60%), Gaps = 41/480 (8%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRAC--------ESVGTMKRYSAGESDEGPVVQRTWLP 161
KA ++ + C +CG+ + +W G C AC E V ++K + + E +V + +
Sbjct: 4 KAKKSVFFCQNCGHEESKWLGQCPACKEWNTFVEEKVTSVKAGTVRDKKEAQIVALSSVE 63
Query: 162 QKPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKS 221
+E R++ M +LD RVLGGG+VPGSLVL+GGDPG+GKS
Sbjct: 64 TDEDE----RMM---TEMAELD--------------RVLGGGIVPGSLVLVGGDPGIGKS 102
Query: 222 TLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIV 281
TLLLQ+ +A ++ ++Y+SGEES++QI RA+RM + LFL T+++ I
Sbjct: 103 TLLLQVCQRLAAMN-----KKILYISGEESLKQIKLRANRMGDFSHTLFLLCETNLDMIR 157
Query: 282 EKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTK 341
++ +P ++IDSIQT+Y V + G + QV+E T+ L++ AK I + + GHVTK
Sbjct: 158 NVIEQQTPDMVVIDSIQTMYNEEVGSAPGSVSQVRESTNILMQLAKGLGISIFIVGHVTK 217
Query: 342 SGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNP 401
G +AGPRVLEH+VD VLY EG++ +SYR+LR+VKNRFGST+E+GVFEM + GL V NP
Sbjct: 218 EGTVAGPRVLEHMVDTVLYFEGDRHASYRILRAVKNRFGSTNEIGVFEMQKRGLVEVENP 277
Query: 402 SKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADM 459
S+ LS + E +G VA M+G+R L+EIQAL S R G+ +R ++
Sbjct: 278 SEFMLSGR---PEHASGSVVACAMEGTRPMLMEIQALVCKSSFGMPRRTAAGLDYNRVNL 334
Query: 460 IISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEI 519
+++VL K+AGL L ++N+ G+ + E A DL + AI SS+ P+ GE+
Sbjct: 335 LMAVLEKRAGLPLSSYDAYVNIAGGIRMNEPAADLGIVMAIASSYKNKPVSEDAIVFGEV 394
Query: 520 GLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVV 579
GL GE+R V+ E+RV+ KLG++ CI+P+ + K L + E +E IG +++ + +N++
Sbjct: 395 GLSGEVRAVTMPEQRVAEAKKLGFKTCILPEVSVKGLGQV--EGIEVIGVRSVNQAMNLL 452
>gi|433448896|ref|ZP_20411761.1| DNA repair protein RadA [Weissella ceti NC36]
gi|429539285|gb|ELA07322.1| DNA repair protein RadA [Weissella ceti NC36]
Length = 458
Score = 337 bits (863), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 198/473 (41%), Positives = 279/473 (58%), Gaps = 30/473 (6%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T + CS+CG ++ G C +C + GT+ V+ P+K + V L
Sbjct: 5 KTQFACSNCGAISQRYMGRCPSCGAWGTL-------------VEEVQQPEKADRKSRVNL 51
Query: 173 L-EVNKGMKQLDWRIPLSGLF---GNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMA 228
EV K K D I + NE RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++
Sbjct: 52 AGEVAKFEKLDDINIEETLRVTSNSNEFDRVLGGGIVPGSLVLIGGDPGIGKSTLLLQVS 111
Query: 229 AIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATE-ELFLYSSTDIEDIVEKVQPL 287
+A+ V+YVSGEES QI RA+R+ + + + +LY TD+ I + + L
Sbjct: 112 GSLAN-----SGQKVLYVSGEESASQIKLRAERLGVQGDADFYLYPETDMSQIRKAIDEL 166
Query: 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAG 347
P ++IDSIQT+ V S G + Q++E T+ LL+ AK + + + GHVTK G+IAG
Sbjct: 167 KPDLVVIDSIQTMQEPDVQSSVGSVAQIRETTAELLQIAKTNGVTIFIVGHVTKEGNIAG 226
Query: 348 PRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLS 407
P++LEH+VD VLY EG+ S+RLLR+VKNRFGST+ELGVFEM GL V+NPS++FL
Sbjct: 227 PKILEHMVDTVLYFEGDNQRSFRLLRAVKNRFGSTNELGVFEMEHEGLAEVANPSQMFLE 286
Query: 408 EQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLM 465
E+ D+ +G AV V ++G+R L+E+QAL R GI +R ++++VL
Sbjct: 287 ERLEDA---SGSAVVVALEGTRPVLVELQALVTPTVFGNAQRTSAGIDRNRVSVLMAVLE 343
Query: 466 KQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGEL 525
K+A L LQ ++ GV L E A DLA+A AI SS+ + G AF+GEIGL GE+
Sbjct: 344 KRANLLLQNQDAYVRAAGGVRLDEPAIDLAIAMAIASSYRDKGTRPGDAFVGEIGLTGEI 403
Query: 526 RMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINV 578
R V R+ R++ LG+++ VP S A E +E IG K L + + +
Sbjct: 404 RRVPRLHDRIAEAQTLGFKRVFVPYSGLD--AKNKVEGIEIIGVKTLSDALRL 454
>gi|225027631|ref|ZP_03716823.1| hypothetical protein EUBHAL_01888 [Eubacterium hallii DSM 3353]
gi|224955040|gb|EEG36249.1| DNA repair protein RadA [Eubacterium hallii DSM 3353]
Length = 479
Score = 337 bits (863), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 196/477 (41%), Positives = 285/477 (59%), Gaps = 27/477 (5%)
Query: 108 KGKANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEV 167
K KA +T + C +CGY +W G C C TM +G + LP++
Sbjct: 25 KSKA-KTVFFCKECGYETPKWMGQCPGCHQWNTMTEEKVSPVSKGTGKRGDNLPRQ---- 79
Query: 168 QPVRLLEVNKGMKQLDWR---IPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLL 224
+ L EV+ M++ D IP E+ RVLGGG+V GSL L+GGDPG+GKSTLL
Sbjct: 80 ELTGLFEVS--MEEEDRSSSGIP-------ELDRVLGGGIVKGSLTLVGGDPGIGKSTLL 130
Query: 225 LQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKV 284
LQ+ A+ VVYVSGEES++QI RA R+ + +FL TDI E V
Sbjct: 131 LQICRYQAN-----SGKKVVYVSGEESLKQIKMRAQRLGGFKQNVFLLCETDINAAAEAV 185
Query: 285 QPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGD 344
+ P +++DS+QT+Y + +AG + QV+E TS L++ AK I V L GHVTK G
Sbjct: 186 REAKPDMVVVDSVQTMYSEEITSAAGSVSQVREVTSVLMQLAKVEGIAVFLVGHVTKEGV 245
Query: 345 IAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKI 404
+AGP+ LEH+VD VLY EG++ + YR+LR VKNRFGST+E+GVFEM + GL V NPSK+
Sbjct: 246 VAGPKTLEHMVDTVLYFEGDQTAIYRILRGVKNRFGSTNEIGVFEMKEQGLVEVENPSKV 305
Query: 405 FLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIIS 462
L + +D+ +G V M+G+R LIEIQAL S + R GI +R +++++
Sbjct: 306 MLDGRPTDA---SGSVVVCSMEGTRPLLIEIQALVSPTSFNMPRRTTVGIDFNRVNLLLA 362
Query: 463 VLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLG 522
VL K+AG++L ++N+ G+ L E A DL + A+ SS+ P+ G GE+GL
Sbjct: 363 VLEKKAGMQLGGCDAYVNLAGGMKLGEPAIDLGIICAVVSSYRNLPVHEGTLIFGEVGLT 422
Query: 523 GELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVV 579
GE+R VS +E+R++ K+G+ +CI+PK+ + L ++++ IG N++EVI V+
Sbjct: 423 GEVRGVSHVEQRLAEAIKMGFTRCIMPKTNAEVLGDNICQKIQVIGVSNVREVIQVL 479
>gi|336421966|ref|ZP_08602120.1| DNA repair protein RadA [Lachnospiraceae bacterium 5_1_57FAA]
gi|336009256|gb|EGN39250.1| DNA repair protein RadA [Lachnospiraceae bacterium 5_1_57FAA]
Length = 451
Score = 337 bits (863), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 189/480 (39%), Positives = 289/480 (60%), Gaps = 41/480 (8%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRAC--------ESVGTMKRYSAGESDEGPVVQRTWLP 161
KA ++ + C +CG+ + +W G C AC E V ++K + + E +V + +
Sbjct: 3 KAKKSVFFCQNCGHEESKWLGQCPACKEWNTFVEEKVTSVKAGTVRDKKEAQIVALSSVE 62
Query: 162 QKPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKS 221
+E R++ M +LD RVLGGG+VPGSLVL+GGDPG+GKS
Sbjct: 63 TDEDE----RMM---TEMAELD--------------RVLGGGIVPGSLVLVGGDPGIGKS 101
Query: 222 TLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIV 281
TLLLQ+ +A ++ ++Y+SGEES++QI RA+RM + LFL T+++ I
Sbjct: 102 TLLLQVCQRLAAMN-----KKILYISGEESLKQIKLRANRMGDFSHTLFLLCETNLDMIR 156
Query: 282 EKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTK 341
++ +P ++IDSIQT+Y V + G + QV+E T+ L++ AK I + + GHVTK
Sbjct: 157 NVIEQQTPDMVVIDSIQTMYNEEVGSAPGSVSQVRESTNILMQLAKGLGISIFIVGHVTK 216
Query: 342 SGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNP 401
G +AGPRVLEH+VD VLY EG++ +SYR+LR+VKNRFGST+E+GVFEM + GL V NP
Sbjct: 217 EGTVAGPRVLEHMVDTVLYFEGDRHASYRILRAVKNRFGSTNEIGVFEMQKRGLVEVENP 276
Query: 402 SKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADM 459
S+ LS + E +G VA M+G+R L+EIQAL S R G+ +R ++
Sbjct: 277 SEFMLSGR---PEHASGSVVACAMEGTRPMLMEIQALVCKSSFGMPRRTAAGLDYNRVNL 333
Query: 460 IISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEI 519
+++VL K+AGL L ++N+ G+ + E A DL + AI SS+ P+ GE+
Sbjct: 334 LMAVLEKRAGLPLSSYDAYVNIAGGIRMNEPAADLGIVMAIASSYKNKPVSEDAIVFGEV 393
Query: 520 GLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVV 579
GL GE+R V+ E+RV+ KLG++ CI+P+ + K L + E +E IG +++ + +N++
Sbjct: 394 GLSGEVRAVTMPEQRVAEAKKLGFKTCILPEVSVKGLGQV--EGIEVIGVRSVNQAMNLL 451
>gi|315037578|ref|YP_004031146.1| DNA repair protein RadA [Lactobacillus amylovorus GRL 1112]
gi|325956060|ref|YP_004286670.1| DNA repair protein RadA [Lactobacillus acidophilus 30SC]
gi|385816936|ref|YP_005853326.1| DNA repair protein RadA [Lactobacillus amylovorus GRL1118]
gi|312275711|gb|ADQ58351.1| DNA repair protein RadA [Lactobacillus amylovorus GRL 1112]
gi|325332625|gb|ADZ06533.1| DNA repair protein RadA [Lactobacillus acidophilus 30SC]
gi|327182874|gb|AEA31321.1| DNA repair protein RadA [Lactobacillus amylovorus GRL1118]
Length = 458
Score = 337 bits (863), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 187/470 (39%), Positives = 275/470 (58%), Gaps = 19/470 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T + C CGY + G C C + ++ + + L QK +PV+L
Sbjct: 5 KTQYKCRSCGYISASYLGRCPNCGAWNQFEKETEEVQKRSTKATASRLIQKTGVNEPVKL 64
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
+K + + RIP E+ RVLGGG+VPGSLVLIGGDPG+GKSTL+LQ+ +
Sbjct: 65 ---DKIKAEKEERIPTKS---EELNRVLGGGIVPGSLVLIGGDPGIGKSTLMLQIMS--- 115
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
DL E V+YVSGEES QI RADR+ + + LY TD+ DI E++ + P +
Sbjct: 116 ---DLSEKYKVLYVSGEESANQIKLRADRLGVGQSNMLLYPETDMHDIREQINDVKPDFV 172
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
+IDSIQT+ + G QV+E TS L++ AK I + + GHVTK G IAGP+++E
Sbjct: 173 VIDSIQTMNEPSLDSMTGSASQVREVTSELMKIAKMNAITIFVIGHVTKEGAIAGPKIME 232
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EG++ SYR+L SVKNRFG+ +E+G+FEM GL+ V+NPS IFL ++ +
Sbjct: 233 HMVDTVLYFEGDEHHSYRILHSVKNRFGAANEIGMFEMVNEGLKEVTNPSSIFLDQRLPN 292
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMKQAGL 470
S G AV V ++G+R L EIQAL + R +G+ +RA ++++VL K+ L
Sbjct: 293 S---TGSAVVVSLEGTRPLLAEIQALVTPTAFGYAKRTTSGLDYNRAALLLAVLEKRGNL 349
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ ++L G+ L E A DLA+ A+ SS+ + I F+GE+GL GE+R V +
Sbjct: 350 MLQNQDVYLTATGGIKLNEPAIDLAIVMAVSSSYTDKEISPTDCFVGEVGLTGEVRRVDK 409
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
++ RV AK+G+++ VP+ A L +E I ++ + + +VF
Sbjct: 410 IDARVKEAAKVGFKRIFVPR--HNMYAGLQDYGIEVIPVSSIPQALKLVF 457
>gi|374387222|ref|ZP_09644708.1| DNA repair protein RadA [Odoribacter laneus YIT 12061]
gi|373222581|gb|EHP44954.1| DNA repair protein RadA [Odoribacter laneus YIT 12061]
Length = 452
Score = 337 bits (863), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 184/448 (41%), Positives = 276/448 (61%), Gaps = 23/448 (5%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVR 171
++T +VC +CG + +W G C C + + E E +T + + +R
Sbjct: 3 SKTIYVCQNCGAKETKWVGRCPTCGEWNSFE-----EEVEIKAKGQTNILVGKSTSKALR 57
Query: 172 LLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAII 231
L EV D RI E+ RVLGGGLVPGS++L+GG+PG+GKSTL+LQ A
Sbjct: 58 LSEVKINA---DERINTGD---GELNRVLGGGLVPGSMILLGGEPGIGKSTLVLQFA--- 108
Query: 232 ADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRA 291
+H+ ++YVSGEES+ QI RA R+ I +E S +E ++E + + P
Sbjct: 109 --LHN--NCGRILYVSGEESIAQIKMRAQRLGIENDECLFLSGNSLEMVLEHSRKIQPHL 164
Query: 292 LIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVL 351
LIIDSIQT+ + G L Q++ECT++LLR++K+ I +L GH+TK G +AGP++L
Sbjct: 165 LIIDSIQTLATENIDAIPGSLSQIRECTNSLLRYSKENTISTILIGHITKDGQLAGPKIL 224
Query: 352 EHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHS 411
EH+VD VL+ EG++ YR+LRS+KNRFGST E+G++EM Q GL+ VSNPS++ LS
Sbjct: 225 EHMVDTVLHFEGDQQYMYRILRSLKNRFGSTSEIGIYEMLQSGLRQVSNPSELLLSNY-- 282
Query: 412 DSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMKQAG 469
S+ L+G+AV+ ++G R L+E+QAL + + R G + R +M+++VL K+ G
Sbjct: 283 -SQELSGIAVSATIEGIRPILLEVQALVSTAAYGVPQRSATGFDSRRLNMLLAVLEKRVG 341
Query: 470 LKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVS 529
+L +FLN+ G+ + + A DLAV AI SS ++ +P+ F GE+GL GE+R VS
Sbjct: 342 FRLATKDVFLNIAGGIRVNDPALDLAVVMAILSSNMDTVLPHDTVFAGEVGLSGEIRAVS 401
Query: 530 RMEKRVSTVAKLGYRKCIVPKSAEKSLA 557
R+E+R+S KLG+++ VPK +KSL
Sbjct: 402 RIEQRISEAEKLGFQQIFVPKGNQKSLT 429
>gi|340362418|ref|ZP_08684803.1| DNA repair protein RadA [Neisseria macacae ATCC 33926]
gi|339887426|gb|EGQ76982.1| DNA repair protein RadA [Neisseria macacae ATCC 33926]
Length = 459
Score = 337 bits (863), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 194/476 (40%), Positives = 280/476 (58%), Gaps = 32/476 (6%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKP--EEV 167
KA +T + C++CG T +W G C C T++ A + Q +W + +
Sbjct: 3 KAPKTIYQCTECGGTSPKWQGKCPHCGEWNTLQESLAAPEPKNARFQ-SWAADTSTVQSL 61
Query: 168 QPVRLLEVNK---GMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLL 224
V EV + GM +LD RVLGGGLV G+++L+GGDPG+GKSTLL
Sbjct: 62 SAVTATEVPRNPTGMGELD--------------RVLGGGLVDGAVILLGGDPGIGKSTLL 107
Query: 225 LQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKV 284
LQ A +A + V+YVSGEES +Q+ RA R+ + TE + L + +E I +
Sbjct: 108 LQTIAKMA------QSRKVLYVSGEESAQQVALRAQRLELPTEGVNLLAEIRMEAIQTAL 161
Query: 285 QPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGD 344
+ P ++IDSIQT+Y + + G + QV+EC + L R AK+ I ++L GHVTK G
Sbjct: 162 KQHQPEVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRMAKQMGIAMILVGHVTKDGA 221
Query: 345 IAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKI 404
IAGPRVLEH+VD VLY EG++ S+YR++R++KNRFG+ +ELGVF M++ GL+ VSNPS I
Sbjct: 222 IAGPRVLEHMVDTVLYFEGDQHSNYRMIRAIKNRFGAANELGVFAMTENGLKGVSNPSAI 281
Query: 405 FLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIIS 462
FL+ D+ G V V +GSR L+EIQAL G T R G++ +R M+++
Sbjct: 282 FLASYRDDT---PGSCVLVTQEGSRPLLVEIQALVDDAHGFTPKRLTVGLEQNRLAMLLA 338
Query: 463 VLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLG 522
VL + G+ + +FLN V GV + E A DLAV A+ SSF P+P + GEIGL
Sbjct: 339 VLNRHGGIACFDQDVFLNAVGGVKIGEPAADLAVILAMLSSFRNRPLPEKMVAFGEIGLS 398
Query: 523 GELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINV 578
GE+R V+R ++R+ KLG+++ IVPK A F ++ G +L+E I++
Sbjct: 399 GEVRPVARGQERLKEAEKLGFKRAIVPK-ANMPRNEKEFPNLKIFGVSSLQEAIDI 453
>gi|417958666|ref|ZP_12601579.1| DNA repair protein RadA [Neisseria weaveri ATCC 51223]
gi|343966478|gb|EGV34734.1| DNA repair protein RadA [Neisseria weaveri ATCC 51223]
Length = 459
Score = 337 bits (863), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 193/476 (40%), Positives = 284/476 (59%), Gaps = 32/476 (6%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQ--KPEEV 167
KA +T + CS+CG T +W G C C T++ A + Q +W + +++
Sbjct: 3 KAPKTVYQCSECGGTTPKWQGKCPHCGEWNTLQESLAAPEPKNVRFQ-SWAADTAQVQDL 61
Query: 168 QPVRLLEVNK---GMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLL 224
V EV + GM +LD RVLGGGLV G+++L+GGDPG+GKSTLL
Sbjct: 62 SQVTATEVPREPTGMGELD--------------RVLGGGLVSGAVILLGGDPGIGKSTLL 107
Query: 225 LQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKV 284
LQ A++A + V+YVSGEES +Q+ RA R+ + +E + L + +E I +
Sbjct: 108 LQAVAMMA------KNRKVLYVSGEESAQQVALRAQRLGLQSEGVNLLAEIRMEAIQTAL 161
Query: 285 QPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGD 344
+ P ++IDSIQT+Y + + G + QV+EC + L R AK+ I ++L GHVTK G
Sbjct: 162 KQHEPAVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRMAKQMGIAMILVGHVTKDGA 221
Query: 345 IAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKI 404
IAGPRVLEH+VD VLY EG++ S+YR++R++KNRFG+ +ELGVF M++ GL+ VSNPS I
Sbjct: 222 IAGPRVLEHMVDTVLYFEGDQHSNYRMIRAIKNRFGAANELGVFAMTEHGLKGVSNPSAI 281
Query: 405 FLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIIS 462
FL+ D + G V V +GSR L+EIQAL G T R G++ +R M+++
Sbjct: 282 FLASYRDD---VPGSCVLVTQEGSRPLLVEIQALVDDAHGFTPKRLTVGLEQNRLAMLLA 338
Query: 463 VLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLG 522
VL + AG+ + +FLN V GV + E A DLA+ A+ SSF P+P + GEIGL
Sbjct: 339 VLNRHAGIACFDQDVFLNAVGGVKINEPAADLAIILAMLSSFRNRPLPEKMVAFGEIGLS 398
Query: 523 GELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINV 578
GE+R V+R ++R+ KLG+++ +VPK A F ++ G +L+E ++V
Sbjct: 399 GEVRPVARGQERLKEAEKLGFKRAVVPK-ANLPRNPKDFPGLQIYGVSSLQEAVDV 453
>gi|326335414|ref|ZP_08201601.1| DNA repair protein RadA [Capnocytophaga sp. oral taxon 338 str.
F0234]
gi|325692180|gb|EGD34132.1| DNA repair protein RadA [Capnocytophaga sp. oral taxon 338 str.
F0234]
Length = 457
Score = 337 bits (863), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 187/478 (39%), Positives = 285/478 (59%), Gaps = 36/478 (7%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTM--------KRYSAGESDEGPVVQRTWLPQKP 164
+T + C +CG +W G C C+ T+ +++ ++D+ T +K
Sbjct: 5 KTAFFCQNCGAQYSKWQGQCYVCKEWNTIVEEVIQKEEKHEWKKNDK----DDTLRSRKT 60
Query: 165 EEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLL 224
+ P+ + K M+ LD SG E+ VLGGG+VPGS+VLIGG+PG+GKSTLL
Sbjct: 61 NKYIPLHEITTEKEMR-LD-----SG--DQELNNVLGGGIVPGSVVLIGGEPGIGKSTLL 112
Query: 225 LQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKV 284
LQ+A + P +YVSGEES +QI R +R+ A ++ + T ++I +++
Sbjct: 113 LQIA--------MRMPYKTLYVSGEESQKQIKMRGERITDARNNCYILTETKTQNIFQQI 164
Query: 285 QPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGD 344
+ L P LIIDSIQT++ + SAG + Q++ECT+ L+++AK T +PV++ GH+TK G
Sbjct: 165 KDLDPEILIIDSIQTLHSDYIEASAGSISQIRECTAELIKYAKLTGVPVIIVGHITKDGT 224
Query: 345 IAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKI 404
IAGP++LEH+VD VL EG++ +R+LR++KNRFGST ELG++EM GL+ VSNPS++
Sbjct: 225 IAGPKILEHMVDTVLQFEGDRNHVFRILRALKNRFGSTSELGIYEMLSTGLREVSNPSEV 284
Query: 405 FLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIIS 462
LS+ +S +G A+ ++G R +IEIQAL S T R G A R +M+++
Sbjct: 285 LLSKTDENS---SGTAIVATIEGMRPLMIEIQALVSSAVYGTPQRSTTGFNAKRLNMLLA 341
Query: 463 VLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLG 522
VL K+AG +L +FLN+ G+++ + + DL VA AI SS + IP F E+GLG
Sbjct: 342 VLEKRAGFRLGSKDVFLNITGGISVDDPSTDLGVAMAILSSNEDVAIPKTFCFAAEVGLG 401
Query: 523 GELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
GE+R V R+E+R+S KLG+ + K + T G + I ++EVI +F
Sbjct: 402 GEIRPVQRVEQRISEAEKLGFDTIFISKYCK---LTAGKSNINVITYAKVEEVIAHLF 456
>gi|116333227|ref|YP_794754.1| DNA repair protein RadA [Lactobacillus brevis ATCC 367]
gi|116098574|gb|ABJ63723.1| Predicted ATP-dependent serine protease [Lactobacillus brevis ATCC
367]
Length = 460
Score = 337 bits (863), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 179/444 (40%), Positives = 268/444 (60%), Gaps = 24/444 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLP---QKPEEVQP 169
RT +VC +C Y+ ++ G C C TM + P RT P+ +
Sbjct: 7 RTTYVCQNCDYSSPRYLGRCPNCGEWNTMVEEVVTPAAAKPQSTRTTASGERSHPQLMSE 66
Query: 170 VRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAA 229
++ ++ Q++ E+ RVLGGG+VPGSL+LIGGDPG+GKSTLLLQ++
Sbjct: 67 IKHSTESRTKTQME-----------ELNRVLGGGIVPGSLILIGGDPGIGKSTLLLQVSG 115
Query: 230 IIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSP 289
++ V+YVSGEES QI RADR+++ ++ L+LY TD+ I ++ + P
Sbjct: 116 QLSQTG-----GKVLYVSGEESASQIKMRADRLVVNSDHLYLYPETDMASIRANIEQMKP 170
Query: 290 RALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPR 349
++IDS+QT+ G+ + G + Q++ T L++ AK I + + GHVTK G IAGP+
Sbjct: 171 DYVVIDSVQTMQAPGIESAIGSVSQIRAVTGELMQIAKTNGITIFVVGHVTKGGAIAGPK 230
Query: 350 VLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQ 409
+LEH+VD VLY EG+ +YR+LR+VKNRFGST+ELG+FEM + GL V+NPS+IFL E+
Sbjct: 231 ILEHMVDTVLYFEGDLHHTYRILRAVKNRFGSTNELGIFEMREGGLYEVANPSEIFLEER 290
Query: 410 HSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQ 467
D+ G A+ V M+G+R L+E+QAL R +G+ +R ++++VL K+
Sbjct: 291 LKDA---TGSAIVVSMEGTRPILVEVQALITPSVFGNAQRTSSGLDRNRVSLLMAVLEKR 347
Query: 468 AGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRM 527
A L LQ FL GV L E A DLA+A +I SS+ + F+GE+GL GE+R
Sbjct: 348 ANLMLQNQDAFLKAAGGVKLDEPAIDLAIALSIVSSYRDTATQPTDCFVGEVGLTGEIRR 407
Query: 528 VSRMEKRVSTVAKLGYRKCIVPKS 551
V+R+E+RV+ KLG+++ +PK+
Sbjct: 408 VNRIEQRVAEAKKLGFKRIFIPKN 431
>gi|268608960|ref|ZP_06142687.1| DNA repair protein RadA [Ruminococcus flavefaciens FD-1]
Length = 457
Score = 336 bits (862), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 192/463 (41%), Positives = 280/463 (60%), Gaps = 23/463 (4%)
Query: 116 WVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVR--LL 173
+ C+ CGY +W G C +C + +++ E D + + + +L
Sbjct: 8 YTCNQCGYESSKWNGKCPSCGA------WNSFEEDVADISPSASRSSSSRQTADLSESIL 61
Query: 174 EVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIAD 233
E+ D R +G+ E+ RVLGGGLV GSLVL+GG+PG+GKST+LLQ+
Sbjct: 62 ELADIGTDDDVRYD-TGI--GELNRVLGGGLVKGSLVLLGGEPGIGKSTILLQICQY--- 115
Query: 234 VHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALI 293
LGE ++YVSGEES QI RA R+ + TE L+L +STD E I + + +P I
Sbjct: 116 ---LGEDHSILYVSGEESARQIKLRAARLGVDTENLYLLTSTDAEAIADTIASSAPDIAI 172
Query: 294 IDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEH 353
IDSIQT+ + ++ S L QV+ECT+ + AK IP+++ GHV K G IAGP+V+EH
Sbjct: 173 IDSIQTMSISRISSSPASLTQVRECTNLFMHTAKDREIPIIIVGHVNKDGAIAGPKVMEH 232
Query: 354 IVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDS 413
IVDAVLY EGE+ SYRLLR+VKNRFGST+E+GVFEM GL+ V+NPS++ LS + +
Sbjct: 233 IVDAVLYFEGERHQSYRLLRAVKNRFGSTNEIGVFEMIDKGLREVANPSQMLLSGRPHN- 291
Query: 414 EFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVLMKQAGLK 471
++G VA +M+GSR L E+QAL S S R V G +R ++II+VL K+ G+
Sbjct: 292 --VSGCCVACVMEGSRPILAEVQALAAKTSYSAPRRMVTGFDFNRLNIIIAVLEKRLGIF 349
Query: 472 LQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRM 531
+ ++LN+V G L E AGDL VA A+ S ++ I + GEIGLGGE+R VS +
Sbjct: 350 MGTLDVYLNIVGGFKLDEPAGDLPVALALYSGIMDKQIDEELIAFGEIGLGGEIRSVSHI 409
Query: 532 EKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKE 574
+R+ ++G++ CI+P+ + S+ ++ ++ I LK+
Sbjct: 410 TQRIREAERMGFKTCIIPRQSASSIDPDEYD-IDIIPASTLKQ 451
>gi|260584279|ref|ZP_05852026.1| DNA repair protein RadA [Granulicatella elegans ATCC 700633]
gi|260157797|gb|EEW92866.1| DNA repair protein RadA [Granulicatella elegans ATCC 700633]
Length = 458
Score = 336 bits (862), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 193/471 (40%), Positives = 280/471 (59%), Gaps = 24/471 (5%)
Query: 115 NWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRLLE 174
+++CS+CGY ++ G C C TM+ Y + ++ L EE + L
Sbjct: 7 SYLCSECGYVSPRYLGKCPNCGQWSTMEEYKELATSS---TKKQSLVSHSEEENRAKPLR 63
Query: 175 VNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADV 234
+++ + R+ S E+ RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ+++ +
Sbjct: 64 IDQVAYERVKRVETSM---QELDRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSSQLQKA 120
Query: 235 HDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALII 294
V+YVSGEES Q+ RA+R+ + + ++Y TD++ +V +V+ L P +II
Sbjct: 121 G-----GSVLYVSGEESAAQVKMRAERLGMQADGFYIYPETDLQAVVTQVEQLKPDYVII 175
Query: 295 DSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHI 354
DSIQT+ G AG + QV+E T+ L+R AK I + + GHVTK G +AGPR+LEH+
Sbjct: 176 DSIQTMAHPQATGIAGSVSQVRESTATLMRLAKLNQIAIFIVGHVTKEGALAGPRMLEHM 235
Query: 355 VDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSE 414
VD VLY EGEK S+R+LRSVKNRFGST+E+GVFEM Q GL+ V NPS++FL E+ +
Sbjct: 236 VDTVLYFEGEKHHSFRILRSVKNRFGSTNEIGVFEMMQDGLKEVINPSEVFLEERLKGA- 294
Query: 415 FLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGLKL 472
G A+ V ++G+R L E+Q L R +G+ +R ++++VL K+AGL L
Sbjct: 295 --TGSAIVVSLEGTRPILAEVQCLLSPAVFGNARRTTSGLDYNRVALLMAVLEKRAGLLL 352
Query: 473 QENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRME 532
Q + G+ L E A DLA+A +I SS+ E F+GEIGL GE+R V+R+
Sbjct: 353 QNQDAYFKSTGGLKLNEPAIDLAIAMSIVSSYKEQGTAVDDCFVGEIGLTGEIRRVNRIS 412
Query: 533 KRVSTVAKLGYRKCIVPKSAEKSLATLGFE---QMEFIGCKNLKEVINVVF 580
RV KLG+++ +PK+ G+E +E IG ++KE I F
Sbjct: 413 DRVKEAQKLGFKRIFIPKN-----NIDGWEFPNGIEVIGVSSVKEAIQKAF 458
>gi|167750300|ref|ZP_02422427.1| hypothetical protein EUBSIR_01274 [Eubacterium siraeum DSM 15702]
gi|167656660|gb|EDS00790.1| DNA repair protein RadA [Eubacterium siraeum DSM 15702]
Length = 465
Score = 336 bits (862), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 196/480 (40%), Positives = 280/480 (58%), Gaps = 42/480 (8%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTM-------KRYSAGESDEG---PVVQRTWLP 161
+++ ++CS+CG +W G C AC + T+ K + +S G P+ L
Sbjct: 4 SKSVYICSECGQEYPKWSGRCNACGAWNTLEETLIQPKSHGLAKSTGGGRLPLSSINNLS 63
Query: 162 QKPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKS 221
E GM +LD RVLGGGLV GSLVL+GGDPG+GKS
Sbjct: 64 FSDET-------RYETGMSELD--------------RVLGGGLVKGSLVLLGGDPGIGKS 102
Query: 222 TLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIV 281
TLLLQ+ +A + V+Y+SGEES QI RADR+ +A++ L++ + TD + I+
Sbjct: 103 TLLLQICGCLA------QDKTVLYISGEESERQIKLRADRLGVASDGLYISACTDCDTII 156
Query: 282 EKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTK 341
E V+ P +IIDSIQT+ L + G L+QV+ECTSA ++ AK + V L GHV K
Sbjct: 157 EGVRENKPDVVIIDSIQTMQLTELQSVPGSLVQVRECTSAFMQMAKSLEVAVFLVGHVNK 216
Query: 342 SGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNP 401
G IAGP+VLEHIVD VLY EG+K SYR+LR+ KNRFGST+E+GVFEM GL+ V NP
Sbjct: 217 DGGIAGPKVLEHIVDTVLYFEGDKQLSYRILRAAKNRFGSTNEIGVFEMQDKGLEQVENP 276
Query: 402 SKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADM 459
S + L + + ++G+ V ++G+R L E+QAL S S R G SR +
Sbjct: 277 SAMLLLGRPAG---VSGITVLCTVEGTRPILAEVQALVGKTSFSAPRRMTTGFDYSRLCV 333
Query: 460 IISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEI 519
+++VL K+ G +++NV+ G+ + E A DLA+A A+ S + PI + +A GE+
Sbjct: 334 LLAVLEKRTGYNFGGYDVYINVIGGLKIDEPASDLAIALALYSGLRDIPIGDDVAMFGEV 393
Query: 520 GLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVV 579
GLGGE+R VS + +RV A++G+ KCIVPKS+ K+L + G NL++ V+
Sbjct: 394 GLGGEIRAVSHIRERVREAARMGFSKCIVPKSSLKNLDKSENYGISIYGVANLQQSFKVL 453
>gi|429204792|ref|ZP_19196075.1| DNA repair protein RadA [Lactobacillus saerimneri 30a]
gi|428147015|gb|EKW99248.1| DNA repair protein RadA [Lactobacillus saerimneri 30a]
Length = 459
Score = 336 bits (862), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 189/479 (39%), Positives = 282/479 (58%), Gaps = 36/479 (7%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTM-----KRYSAGESDEGPVVQ---RTWLPQKP 164
+TN++C +CGY ++ G C C S T K + S P V PQ
Sbjct: 5 KTNYLCQECGYISPRYLGRCPNCNSWNTFVEQVEKPATTSNSTASPRVNLRGTQVQPQLL 64
Query: 165 EEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLL 224
+ V ++ V GM++LD RVLGGG+VPGSL+LIGGDPG+GKSTLL
Sbjct: 65 DTVTTQKVPRVTTGMQELD--------------RVLGGGIVPGSLILIGGDPGIGKSTLL 110
Query: 225 LQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKV 284
LQ++ +A V+YV+GEES Q+ RADR+ + ++Y TD+ + E +
Sbjct: 111 LQVSGQLAHSQ-----KKVLYVTGEESASQVKMRADRLGVGGNSFYIYPETDMASVKESI 165
Query: 285 QPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGD 344
P ++IDS+QT+ G+ + G + Q++E T L++ AK I V + GHVTK G
Sbjct: 166 ATTQPDFVVIDSVQTMQEPGMNSAVGSVAQIREVTGDLMQIAKTNGITVFVVGHVTKGGA 225
Query: 345 IAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKI 404
IAGP++LEH+VD VLY EG++ +R++R+VKNRFGST+E+GVFEM + GL V+NPS++
Sbjct: 226 IAGPKILEHMVDTVLYFEGDQHRVFRMIRAVKNRFGSTNEVGVFEMREQGLAEVTNPSEV 285
Query: 405 FLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIIS 462
FL E+ +D+ G AV V ++G+R L EIQAL + R G+ +R +I++
Sbjct: 286 FLQERLADA---TGSAVVVSLEGTRPLLAEIQALVTPTAFGNAQRTTTGLNRNRVALIMA 342
Query: 463 VLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLG 522
VL K+AGL LQ +L G+ L E A DLA+A +I SS+ + FIGEIGL
Sbjct: 343 VLEKRAGLLLQNQDAYLKTAGGLKLDEPAIDLALAISIASSYRDTATLPTDCFIGEIGLT 402
Query: 523 GELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGF-EQMEFIGCKNLKEVINVVF 580
GE+R VS++E+RV+ KLG+ + VP++ +L F + ++ +G K +++ + + F
Sbjct: 403 GEVRRVSQIEQRVNEAVKLGFHRVFVPQN---NLDGWQFPDGIQVVGVKTVEQALKLAF 458
>gi|425459378|ref|ZP_18838864.1| DNA repair protein radA homolog [Microcystis aeruginosa PCC 9808]
gi|389822919|emb|CCI29276.1| DNA repair protein radA homolog [Microcystis aeruginosa PCC 9808]
Length = 508
Score = 336 bits (862), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 196/475 (41%), Positives = 284/475 (59%), Gaps = 51/475 (10%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKP------E 165
+RT ++CS CG QW G C +C++ GT++ + + W +P
Sbjct: 4 SRTIYICSACGAESPQWLGKCPSCDTYGTLEEQVMAGGNNPAGNRPGWQNSRPNNGKGQR 63
Query: 166 EVQP---VRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKST 222
QP VR E+ + ++ R P SG E RVLGGG+VPGSLVLIGGDPG+GKST
Sbjct: 64 NPQPRISVRFSEITQYEQE---RFP-SGY--GEFDRVLGGGIVPGSLVLIGGDPGIGKST 117
Query: 223 LLLQMAAIIADVHDLGEPSP-VVYVSGEESVEQIGNRADRM---MIATE----------- 267
LLLQ+ + L + P ++YVS EES +QI RA R+ ++A E
Sbjct: 118 LLLQVT------NQLAQRLPRILYVSAEESGQQIKLRAARLGVGVVAVESENNGNGKEKK 171
Query: 268 ----------ELFLYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKE 317
L++ TD+E+I+ +++ L P+ +IDSIQT+Y + + G + QV+E
Sbjct: 172 ASESTSELDNHLYVLPETDLEEILRELESLRPQVAVIDSIQTLYFGALTSAPGSVAQVRE 231
Query: 318 CTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKN 377
CTSAL++ AK+ NI +L+ GHVTK G IAGPRVLEH+VD VLY EG++++S+RLLRSVKN
Sbjct: 232 CTSALMQVAKRENITLLIVGHVTKEGAIAGPRVLEHLVDTVLYFEGDRYASHRLLRSVKN 291
Query: 378 RFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQA 437
RFG+T E+G+FEM GL V NPS++FL + EF G A V +G+R ++E+QA
Sbjct: 292 RFGATHEIGIFEMVDHGLVEVENPSELFLGNR---DEFSPGTATVVACEGTRPIVVELQA 348
Query: 438 LCVSGSTVS--RHVNGIQASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLA 495
L S S R GI+ +R I++VL K+ G+ L + ++ G+ + E A DL
Sbjct: 349 LVSPTSYASPRRSTTGIEYNRLQQILAVLEKRVGIPLSKLDAYVASAGGLGVEEPAADLG 408
Query: 496 VAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPK 550
VA A+ +SF + + IGE+GLGG++R+VS+ME R+ AKLG+++ IVP+
Sbjct: 409 VAIAVVASFRDRVVDPRTVLIGEVGLGGQVRLVSQMELRLKEAAKLGFKRAIVPR 463
>gi|333980505|ref|YP_004518450.1| DNA repair protein RadA [Desulfotomaculum kuznetsovii DSM 6115]
gi|333823986|gb|AEG16649.1| DNA repair protein RadA [Desulfotomaculum kuznetsovii DSM 6115]
Length = 454
Score = 336 bits (862), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 191/477 (40%), Positives = 282/477 (59%), Gaps = 33/477 (6%)
Query: 111 ANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGP--VVQRTWLPQKPEEVQ 168
A++T + C +CG+ +W G C C + T+ + + + P VV T LP +
Sbjct: 2 ASKTRFCCQECGHCTPRWLGRCPECGAWNTLVEEAVAGTKQRPGRVVAPTPLP-----IT 56
Query: 169 PVRLLEVNK---GMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLL 225
+ L E + G+ +LD RVLGGG+VP SL+L+GGDPG+GKSTLLL
Sbjct: 57 QISLDEEERFSTGIGELD--------------RVLGGGVVPASLILLGGDPGIGKSTLLL 102
Query: 226 QMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQ 285
Q+A +A G V+YV+GEESV+Q+ RA R+ + + L+L + TDI+ + ++
Sbjct: 103 QVATSVA-----GAGRVVLYVTGEESVQQVRLRAFRLGVESSRLYLLAETDIDAVENSIR 157
Query: 286 PLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDI 345
L P +I+DSIQT++ + G + QV+EC + L+R AK+T + + L GHVTK G +
Sbjct: 158 SLKPALVIVDSIQTMHKVDFGSAPGSVGQVRECATQLMRLAKETGVAIFLVGHVTKEGLL 217
Query: 346 AGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIF 405
AGPRVLEH+VDAVLY EGE+ S+R+LR VKNRFGST+E+GVFEM GL V+NPS +F
Sbjct: 218 AGPRVLEHMVDAVLYFEGERHQSFRILRGVKNRFGSTNEIGVFEMKDDGLVEVANPSSLF 277
Query: 406 LSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISV 463
+ + + +AG V ++G+R L+EIQAL R G+ +R +I++V
Sbjct: 278 MIQHPAGP--VAGAVVVPTLEGTRPLLVEIQALVSPTGFGNPRRMTAGVDYNRVILIMAV 335
Query: 464 LMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGG 523
L K+ GL L ++N V GV L E A DL +A A+ SSF + P+ +A +GE+GL G
Sbjct: 336 LEKRVGLHLGSYDAYVNAVGGVRLVEPAVDLGIAVALASSFRDLPVNCRLAVVGEVGLTG 395
Query: 524 ELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
ELR V+ +EKRV A+LG+ C++P++ + M G + L E + +
Sbjct: 396 ELRPVTGIEKRVQEAAQLGFTHCLLPRANLGQVDPSRVGTMNVWGAQTLSEALEIAL 452
>gi|425450839|ref|ZP_18830662.1| DNA repair protein radA homolog [Microcystis aeruginosa PCC 7941]
gi|440753507|ref|ZP_20932710.1| DNA repair protein RadA [Microcystis aeruginosa TAIHU98]
gi|389768145|emb|CCI06660.1| DNA repair protein radA homolog [Microcystis aeruginosa PCC 7941]
gi|440178000|gb|ELP57273.1| DNA repair protein RadA [Microcystis aeruginosa TAIHU98]
Length = 508
Score = 336 bits (862), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 196/475 (41%), Positives = 284/475 (59%), Gaps = 51/475 (10%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKP------E 165
+RT ++CS CG QW G C +C++ GT++ + + W +P
Sbjct: 4 SRTIYICSACGAESPQWLGKCPSCDTYGTLEEQVMAGGNNPAGNRPGWQNSRPNNGKGQR 63
Query: 166 EVQP---VRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKST 222
QP VR E+ + ++ R P SG E RVLGGG+VPGSLVLIGGDPG+GKST
Sbjct: 64 NPQPRISVRFSEITQYEQE---RFP-SGY--GEFDRVLGGGIVPGSLVLIGGDPGIGKST 117
Query: 223 LLLQMAAIIADVHDLGEPSP-VVYVSGEESVEQIGNRADRM---MIATE----------- 267
LLLQ+ + L + P ++YVS EES +QI RA R+ ++A E
Sbjct: 118 LLLQV------TNQLAQRLPRILYVSAEESGQQIKLRAARLGVGVVAVESENNGNGKEKK 171
Query: 268 ----------ELFLYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKE 317
L++ TD+E+I+ +++ L P+ +IDSIQT+Y + + G + QV+E
Sbjct: 172 ASESTAELDNHLYVLPETDLEEILRELESLRPQVAVIDSIQTLYFGALTSAPGSVAQVRE 231
Query: 318 CTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKN 377
CTSAL++ AK+ NI +L+ GHVTK G IAGPRVLEH+VD VLY EG++++S+RLLRSVKN
Sbjct: 232 CTSALMQVAKRENITLLIVGHVTKEGAIAGPRVLEHLVDTVLYFEGDRYASHRLLRSVKN 291
Query: 378 RFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQA 437
RFG+T E+G+FEM GL V NPS++FL + EF G A V +G+R ++E+QA
Sbjct: 292 RFGATHEIGIFEMVDHGLVEVENPSELFLGNR---DEFSPGTATVVACEGTRPIVVELQA 348
Query: 438 LCVSGSTVS--RHVNGIQASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLA 495
L S S R GI+ +R I++VL K+ G+ L + ++ G+ + E A DL
Sbjct: 349 LVSPTSYASPRRSTTGIEYNRLQQILAVLEKRVGIPLSKLDAYVASAGGLGVEEPAADLG 408
Query: 496 VAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPK 550
VA A+ +SF + + IGE+GLGG++R+VS+ME R+ AKLG+++ IVP+
Sbjct: 409 VAIAVVASFRDRVVDPRTVLIGEVGLGGQVRLVSQMELRLKEAAKLGFKRAIVPR 463
>gi|261380461|ref|ZP_05985034.1| DNA repair protein RadA [Neisseria subflava NJ9703]
gi|284796703|gb|EFC52050.1| DNA repair protein RadA [Neisseria subflava NJ9703]
Length = 458
Score = 336 bits (862), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 195/476 (40%), Positives = 279/476 (58%), Gaps = 32/476 (6%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKP--EEV 167
KA +T + CS+CG T +W G C C T++ A + Q +W + +
Sbjct: 3 KAPKTIYQCSECGGTSPKWQGKCPHCGEWNTLQESLAAPEPKNARFQ-SWAADTSTIQSL 61
Query: 168 QPVRLLEVNK---GMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLL 224
V EV + GM +LD RVLGGGLV G+++L+GGDPG+GKSTLL
Sbjct: 62 SAVTATEVPRNPTGMGELD--------------RVLGGGLVDGAVILLGGDPGIGKSTLL 107
Query: 225 LQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKV 284
LQ A +A + V+Y+SGEES +Q+ RA R+ + TE + L + +E I +
Sbjct: 108 LQTIAKMA------QSRKVLYISGEESAQQVALRAQRLELPTEGVNLLAEIRMEAIQTAL 161
Query: 285 QPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGD 344
+ P ++IDSIQT+Y + + G + QV+EC + L R AK+ I ++L GHVTK G
Sbjct: 162 KQHQPAVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRMAKQMGIAMILVGHVTKDGA 221
Query: 345 IAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKI 404
IAGPRVLEH+VD VLY EG++ S+YR++R++KNRFG+ +ELGVF M++ GL+ VSNPS I
Sbjct: 222 IAGPRVLEHMVDTVLYFEGDQHSNYRMIRAIKNRFGAANELGVFAMTENGLRGVSNPSAI 281
Query: 405 FLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIIS 462
FL+ D+ G V V +GSR L+EIQAL G T R G++ +R M+++
Sbjct: 282 FLASYRDDT---PGSCVLVTQEGSRPLLVEIQALVDDAHGFTPKRLTVGLEQNRLSMLLA 338
Query: 463 VLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLG 522
VL + G+ + +FLN V GV + E A DLAV A+ SSF P+P GEIGL
Sbjct: 339 VLNRHGGIACFDQDVFLNAVGGVKIGEPAADLAVILAMLSSFRNRPMPEKTVVFGEIGLS 398
Query: 523 GELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINV 578
GE+R V+R ++R+ KLG+++ IVPK A F ++ G +L+E I+V
Sbjct: 399 GEVRPVARGQERLKEAEKLGFKRAIVPK-ANMPRHDKEFPNLKIYGVSSLQEAIDV 453
>gi|317474907|ref|ZP_07934176.1| DNA repair protein RadA [Bacteroides eggerthii 1_2_48FAA]
gi|316908810|gb|EFV30495.1| DNA repair protein RadA [Bacteroides eggerthii 1_2_48FAA]
Length = 455
Score = 336 bits (862), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 190/470 (40%), Positives = 281/470 (59%), Gaps = 22/470 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T +VCS+CG +W G C +C G Y + V +R + + +PV L
Sbjct: 5 KTVYVCSNCGQESPKWVGKCPSC---GEWNTYVEEIVRKETVNKRPVSGIETAKAKPVTL 61
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
E+ + P L E+ RVLGGGLV GSLVLIGG+PG+GKSTL+LQ I
Sbjct: 62 NEIAADDE------PRIDLHDAELNRVLGGGLVQGSLVLIGGEPGIGKSTLVLQTMLQIP 115
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+ ++Y+SGEES Q+ RADR+ + + + T +E I ++ P +
Sbjct: 116 EKR-------ILYISGEESARQLKLRADRLTSNSADCLIVCETSLEQIYVHIKNTRPDLV 168
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
+IDSIQT+ + S G + QV+EC++++LRFAK+T+ V+L GH+ K G IAGP+VLE
Sbjct: 169 VIDSIQTISTETLESSPGSIAQVRECSASILRFAKETHTAVILIGHINKEGSIAGPKVLE 228
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
HIVD VL EG++ YR+LRS+KNRFGST ELG++EM Q GL+ VSNPS++ L++ H
Sbjct: 229 HIVDTVLQFEGDQHYMYRILRSIKNRFGSTAELGIYEMRQDGLRQVSNPSELLLTQDH-- 286
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
E ++G+A+A ++G R FLIE QAL S R G R +M+++VL K+ G
Sbjct: 287 -EGMSGIAIASAIEGIRPFLIETQALVSSAVYGNPQRSATGFDIRRMNMLLAVLEKRVGF 345
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
KL + +FLN+ G+ + + A DL+V +AI SS ++ I I GEIGL GE+R V+R
Sbjct: 346 KLAQKDVFLNIAGGLKVNDPAIDLSVISAILSSNMDTAIEPEICMAGEIGLSGEIRPVNR 405
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+E+R+ KLG+++ I+PK + L T ++E I + ++E +F
Sbjct: 406 IEQRIGEAEKLGFKRFILPKYNMQGLNTSKL-KIELIPVRKVEEAFRALF 454
>gi|313893284|ref|ZP_07826859.1| DNA repair protein RadA [Veillonella sp. oral taxon 158 str. F0412]
gi|313442180|gb|EFR60597.1| DNA repair protein RadA [Veillonella sp. oral taxon 158 str. F0412]
Length = 457
Score = 336 bits (862), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 186/473 (39%), Positives = 288/473 (60%), Gaps = 24/473 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQ--KPEEVQPV 170
++ + C +CG +W G C C T+ E+ R Q KP + +
Sbjct: 5 KSVFFCQNCGAESSKWMGRCPQCGEWNTLVEEIIKETKHSRTPSRGIGNQTTKPTALPDI 64
Query: 171 RLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAI 230
+ + + LS FG E+ RVLGGG+VPG+L+L+GGDPG+GKSTLLLQ++
Sbjct: 65 EISSIAR----------LSTTFG-EIDRVLGGGIVPGALMLLGGDPGIGKSTLLLQVSQK 113
Query: 231 IADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPR 290
+AD V+Y SGEES Q+ RA+R+ I +E L + + TD++ I+E+ ++P
Sbjct: 114 VADT-----VGTVLYASGEESQLQLKLRAERLHINSERLQVIADTDLDHILEQADAMTPS 168
Query: 291 ALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRV 350
L+IDSIQT+Y + + G + QV+ECTS LLRF K+ NIP ++ GHVTK G+IAGPR+
Sbjct: 169 LLVIDSIQTMYTGDIDAAPGSVSQVRECTSRLLRFCKERNIPTVIIGHVTKEGNIAGPRM 228
Query: 351 LEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQH 410
LEH+VD VLY EGE+ +R+LRS+KNRFGST E G+F M + GLQ +SNPS L+E+
Sbjct: 229 LEHMVDVVLYFEGERSYQFRILRSIKNRFGSTSETGIFAMVEEGLQELSNPSASLLAER- 287
Query: 411 SDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMKQA 468
SD E +G AV + ++G R L+E+Q+L V+ + R G +R ++++VL K+
Sbjct: 288 SDEE--SGSAVMIYLEGVRPILVEVQSLVVTTAFGMPRRTAIGYDLNRLIVLLAVLEKRC 345
Query: 469 GLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMV 528
G L +++NV+ G+ + E A DL++A AI S+ +P + +GE+GL G +R +
Sbjct: 346 GFTLGNKDVYVNVIGGLKVNEPACDLSMAVAIVSNLKNRIVPTDMVILGEVGLTGNVRSI 405
Query: 529 SRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVFT 581
R+E+R++ KLG++K I+P+ K + ++ G K+++E + +VF+
Sbjct: 406 PRIEQRINEAKKLGFKKFIIPEGNYKQIKD-NDSSIKIRGVKSIQEAMQLVFS 457
>gi|345876050|ref|ZP_08827829.1| DNA repair protein RadA [Neisseria weaveri LMG 5135]
gi|343967523|gb|EGV35767.1| DNA repair protein RadA [Neisseria weaveri LMG 5135]
Length = 459
Score = 336 bits (862), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 193/476 (40%), Positives = 284/476 (59%), Gaps = 32/476 (6%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQ--KPEEV 167
KA +T + CS+CG T +W G C C T++ A + Q +W + +++
Sbjct: 3 KAPKTVYQCSECGGTTPKWQGKCPHCGEWNTLQESLAAPEPKNVRFQ-SWAADTAQVQDL 61
Query: 168 QPVRLLEVNK---GMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLL 224
V EV + GM +LD RVLGGGLV G+++L+GGDPG+GKSTLL
Sbjct: 62 SKVTATEVPREPTGMGELD--------------RVLGGGLVSGAVILLGGDPGIGKSTLL 107
Query: 225 LQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKV 284
LQ A++A + V+YVSGEES +Q+ RA R+ + +E + L + +E I +
Sbjct: 108 LQTIAMMA------KNRKVLYVSGEESAQQVALRAQRLGLQSEGVNLLAEIRMEAIQTAL 161
Query: 285 QPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGD 344
+ P ++IDSIQT+Y + + G + QV+EC + L R AK+ I ++L GHVTK G
Sbjct: 162 KQHEPAVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRIAKQMGIAMILVGHVTKDGA 221
Query: 345 IAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKI 404
IAGPRVLEH+VD VLY EG++ S+YR++R++KNRFG+ +ELGVF M++ GL+ VSNPS I
Sbjct: 222 IAGPRVLEHMVDTVLYFEGDQHSNYRMIRAIKNRFGAANELGVFAMTEHGLKGVSNPSAI 281
Query: 405 FLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIIS 462
FL+ D + G V V +GSR L+EIQAL G T R G++ +R M+++
Sbjct: 282 FLASYRDD---VPGSCVLVTQEGSRPLLVEIQALVDDAHGFTPKRLTVGLEQNRLAMLLA 338
Query: 463 VLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLG 522
VL + AG+ + +FLN V GV + E A DLA+ A+ SSF P+P + GEIGL
Sbjct: 339 VLNRHAGIACFDQDVFLNAVGGVKINEPAADLAIILAMLSSFRNRPLPEKMVAFGEIGLS 398
Query: 523 GELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINV 578
GE+R V+R ++R+ KLG+++ +VPK A F ++ G +L+E ++V
Sbjct: 399 GEVRPVARGQERLKEAEKLGFKRAVVPK-ANLPRNPKDFPGLQIYGVSSLQEAVDV 453
>gi|323345226|ref|ZP_08085449.1| DNA repair protein RadA [Prevotella oralis ATCC 33269]
gi|323093340|gb|EFZ35918.1| DNA repair protein RadA [Prevotella oralis ATCC 33269]
Length = 464
Score = 336 bits (862), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 189/479 (39%), Positives = 286/479 (59%), Gaps = 29/479 (6%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTW-----LPQKPEE 166
++ +VCS+CG +W G C +C T K D G + R+ L
Sbjct: 4 DKIAYVCSNCGQESAKWIGKCPSCGQWNTFKEIRIA-GDTGSMAARSAAQSVRLSVAGTS 62
Query: 167 VQPVRLLEVN-KGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLL 225
+P+ L E++ K ++D E+ RVLGGGLVPGS+VL+GG+PG+GKSTL L
Sbjct: 63 NKPLYLHEISAKDEPRIDTN-------DTELNRVLGGGLVPGSIVLLGGEPGIGKSTLTL 115
Query: 226 QMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRM--MIATEELFLYSSTDIEDIVEK 283
Q + D ++YVSGEES Q+ RADR+ + + T +E I E
Sbjct: 116 QTILRMTD-------RRILYVSGEESAHQLKLRADRLGSNRQNNNVMILCETSLEHIFEH 168
Query: 284 VQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSG 343
++ P +IIDSIQT+ V S G + QV+EC ++LLRFAK + +PV+L GH+ K G
Sbjct: 169 IKDTHPEIVIIDSIQTIATSEVESSPGSITQVRECAASLLRFAKTSGVPVVLIGHINKEG 228
Query: 344 DIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSK 403
+AGP++LEHIVD V+ EG++ YR+LRS+KNRFGST ELG++EM + GL+ VSNPS+
Sbjct: 229 TLAGPKILEHIVDTVIQFEGDQHYMYRILRSIKNRFGSTSELGIYEMERNGLRQVSNPSE 288
Query: 404 IFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMII 461
+ L++ H E L+G+A++ ++G R FL+E QAL S + T R G + R +M++
Sbjct: 289 LLLTQDH---EGLSGIAISSAIEGIRPFLVETQALVSSAAYGTPQRTATGFEQKRLNMLL 345
Query: 462 SVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGL 521
+VL K+ G KL + +F+N+ G+ +T+ A DL+V AA+ SS ++ I +G GE+GL
Sbjct: 346 AVLEKRVGFKLMQKDVFINIAGGLRVTDLAIDLSVIAAVLSSNVDTAIEHGWCMAGEVGL 405
Query: 522 GGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
GE+R V+R+E+R++ KLG+ IVPK +S G ++E + ++E + +F
Sbjct: 406 SGEVRPVNRIEQRIAEAEKLGFTHMIVPKYNLQSF-NQGKYRIELHPVRKVEEALRCLF 463
>gi|322514595|ref|ZP_08067628.1| DNA repair protein RadA [Actinobacillus ureae ATCC 25976]
gi|322119534|gb|EFX91621.1| DNA repair protein RadA [Actinobacillus ureae ATCC 25976]
Length = 459
Score = 336 bits (862), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 188/476 (39%), Positives = 286/476 (60%), Gaps = 26/476 (5%)
Query: 109 GKANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQR--TWLPQKPEE 166
KA +T +VC+DCG +W G C+ C++ T+ S E R + + +
Sbjct: 2 AKAPKTAYVCNDCGAEYSRWMGQCKECKAWNTISEVRLISSKESSKNDRFSGYAGETSGK 61
Query: 167 VQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQ 226
VQ + + + + +P NE+ RVLGGG VPGS +LIGG PG GKSTLLLQ
Sbjct: 62 VQTLSEISLQE--------VPRFSSGFNELDRVLGGGAVPGSAILIGGHPGAGKSTLLLQ 113
Query: 227 MAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQP 286
+ ++ + P +YV+GEES++Q+ RA+R+ + T+ L + S T +E I
Sbjct: 114 VMCCLSKM------LPTLYVTGEESLQQVAMRANRLGLPTDNLKMLSETSVEHICNIADQ 167
Query: 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIA 346
P+ ++IDSIQ ++L + S G + QV+EC S L R+AK + +++ GHVTK G +A
Sbjct: 168 EKPKLMVIDSIQVMHLSDIQSSPGSVAQVRECASFLTRYAKTRQVAIIMVGHVTKDGTLA 227
Query: 347 GPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFL 406
GP+VLEH +DA L +EGE S +R LRS KNRFG+ +ELGVF M++ GL+ V NPS IFL
Sbjct: 228 GPKVLEHAIDASLLLEGESDSRFRTLRSQKNRFGAVNELGVFAMTEQGLREVKNPSAIFL 287
Query: 407 SEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVS---RHVNGIQASRADMIISV 463
S SD E ++G +V V+ +G+R L+EIQAL V S ++ R G+ +R ++++V
Sbjct: 288 S--RSD-ELVSGSSVMVLWEGTRPLLVEIQAL-VDHSMLANPRRVAVGLDHNRLSLLLAV 343
Query: 464 LMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGG 523
L + GL++ + +F+NVV GV +TET+ DLA+ A+ SSF P+P + GE+GL G
Sbjct: 344 LHRHGGLQMSDQDVFVNVVGGVKVTETSADLALILALISSFRNRPLPQDLVIFGEVGLAG 403
Query: 524 ELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVV 579
E+R V ++R+S AK G+++ IVP ++ + ME IG K L + ++ +
Sbjct: 404 EIRPVPSGQERISEAAKHGFKRAIVPFG---NMPKKPIKYMEVIGVKKLSDALDTL 456
>gi|392969834|ref|ZP_10335246.1| DNA repair protein RadA [Staphylococcus equorum subsp. equorum Mu2]
gi|403047552|ref|ZP_10903020.1| DNA repair protein RadA [Staphylococcus sp. OJ82]
gi|392512122|emb|CCI58442.1| DNA repair protein RadA [Staphylococcus equorum subsp. equorum Mu2]
gi|402763086|gb|EJX17180.1| DNA repair protein RadA [Staphylococcus sp. OJ82]
Length = 458
Score = 336 bits (862), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 191/471 (40%), Positives = 283/471 (60%), Gaps = 31/471 (6%)
Query: 118 CSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQ---KPEEVQPVRLLE 174
C CGY +W G C C M E V Q+ P+ + + V ++
Sbjct: 10 CMACGYQSAKWMGKCPNCGGWNQM---------EEIVEQKAASPKHGVRSRDRDNVSKVQ 60
Query: 175 VNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADV 234
+KQ P +E RVLGGG+V GSLVLIGGDPG+GKSTLLLQ+ A ++
Sbjct: 61 KLNEIKQ--ETTPRVKTKSDEFNRVLGGGIVNGSLVLIGGDPGIGKSTLLLQICAALSQS 118
Query: 235 HDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALII 294
H+ V+Y++GEES+ Q RA+R+ + EL +++ TD+E I E V+ L P L++
Sbjct: 119 HN------VLYITGEESLNQTKLRAERLDEDSSELNVFAETDLEVIHETVKQLKPDLLVV 172
Query: 295 DSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHI 354
DSIQT++ ++ + G + QV+E T +L+ AK+ NI + GHVTK G IAGPR+LEH+
Sbjct: 173 DSIQTIFHPEISSAPGSVSQVRESTQSLMNIAKQMNIATFIVGHVTKEGQIAGPRLLEHM 232
Query: 355 VDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSE 414
VD VLY EG++ +YR+LR+VKNRFGST+E+G+FEM Q GL+ V NPS++FL E+ ++
Sbjct: 233 VDTVLYFEGDEHHAYRILRAVKNRFGSTNEMGIFEMKQSGLKGVKNPSEMFLEERSTN-- 290
Query: 415 FLAGLAVAVIMDGSRSFLIEIQALCVSGSTVS---RHVNGIQASRADMIISVLMKQAGLK 471
+ G + M+G+R LIE+QAL V+ +T + R GI +R ++++VL K+
Sbjct: 291 -VPGSTIVSTMEGTRPLLIEVQAL-VTPTTFNNPRRMATGIDHNRLSLLMAVLEKKENYL 348
Query: 472 LQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRM 531
LQ+ ++ V GV LTE A DL + A SSF + + FIGE+GL GE+R VSR+
Sbjct: 349 LQQQDAYIKVAGGVRLTEPAVDLGIIVATASSFKDLTVDGLDCFIGEVGLTGEVRRVSRI 408
Query: 532 EKRVSTVAKLGYRKCIVPKSAEKSLATLGF-EQMEFIGCKNLKEVINVVFT 581
E+RV KLG+++ I+P+S ++ F ++ IG K++ E + T
Sbjct: 409 EQRVQEAEKLGFKRIIIPES---NIGGWQFPSDIKVIGVKSVHEALKYALT 456
>gi|329119187|ref|ZP_08247876.1| DNA repair protein RadA [Neisseria bacilliformis ATCC BAA-1200]
gi|327464700|gb|EGF10996.1| DNA repair protein RadA [Neisseria bacilliformis ATCC BAA-1200]
Length = 460
Score = 336 bits (862), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 192/476 (40%), Positives = 283/476 (59%), Gaps = 32/476 (6%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPE--EV 167
KA +T + C++CG T +W G C C T++ A + Q +W ++ + E+
Sbjct: 3 KAPKTLYRCTECGGTVPKWQGKCPHCGEWNTLQEDIAAPEPKNARFQ-SWAAERTQVQEL 61
Query: 168 QPVRLLEVNK---GMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLL 224
V +EV + GM +LD RVLGGGLV G+++L+GGDPG+GKSTLL
Sbjct: 62 SQVTAVEVPREATGMGELD--------------RVLGGGLVDGAVILLGGDPGIGKSTLL 107
Query: 225 LQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKV 284
LQ A++A + V+YVSGEES +Q+ RA R+ + E + L + +E + +
Sbjct: 108 LQTIALMA------KKRKVLYVSGEESAQQVALRAQRLGLNAEGVNLLAEIRLEAVQAAL 161
Query: 285 QPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGD 344
+ P ++IDSIQT+Y + + G + QV+EC + R AK+ I ++ GHVTK G
Sbjct: 162 KQHVPSVVVIDSIQTMYSDQITSAPGSVSQVRECAAQFTRIAKQMGIAMIFVGHVTKDGA 221
Query: 345 IAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKI 404
IAGPRVLEH+VD VLY EG++ S+YR++R++KNRFG+ +ELGVF M++ GL+ VSNPS I
Sbjct: 222 IAGPRVLEHMVDTVLYFEGDQHSNYRMIRAIKNRFGAANELGVFAMTETGLKGVSNPSAI 281
Query: 405 FLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIIS 462
FL+ D +AG V V +GSR L+EIQ+L G T R G++ +R M+++
Sbjct: 282 FLASYRDD---VAGSCVLVTQEGSRPLLVEIQSLVDDAHGFTPKRLTVGLEQNRLAMLLA 338
Query: 463 VLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLG 522
VL + AG+ + +FLN V GV + E A DLAV A+ SSF P+P + GEIGL
Sbjct: 339 VLNRHAGIACFDQDVFLNAVGGVKIGEPAADLAVILAMLSSFRNKPLPEKMVAFGEIGLS 398
Query: 523 GELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINV 578
GE+R V+R ++R+ KLG+++ IVPK A F +E G + L+E + +
Sbjct: 399 GEVRPVARGQERLKEAEKLGFKRAIVPK-ANLPRNKKEFPNLEIFGVERLQEAVQL 453
>gi|350571246|ref|ZP_08939576.1| DNA repair protein RadA [Neisseria wadsworthii 9715]
gi|349792517|gb|EGZ46372.1| DNA repair protein RadA [Neisseria wadsworthii 9715]
Length = 455
Score = 336 bits (862), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 194/488 (39%), Positives = 284/488 (58%), Gaps = 54/488 (11%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTMK-----------RYSAGESDEGPV---- 154
KA +T + CS+CG T +W G C C T++ R+ + +D V
Sbjct: 3 KAPKTVYQCSECGGTTSKWQGKCPHCGEWNTLQESLVAPEPKNVRFQSWAADTAQVQELS 62
Query: 155 -VQRTWLPQKPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIG 213
V T +P++P GM +LD RVLGGGLV G+++L+G
Sbjct: 63 QVTATEVPREP------------TGMGELD--------------RVLGGGLVSGAVILLG 96
Query: 214 GDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYS 273
GDPG+GKSTLLLQ A++A + V+YVSGEES +Q+ RA R+ + +E + L +
Sbjct: 97 GDPGIGKSTLLLQTVAMMA------KNRTVLYVSGEESAQQVALRAQRLGLQSEGVNLLA 150
Query: 274 STDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPV 333
+E I ++ P ++IDSIQT+Y + + G + QV+EC + L R AK+ I +
Sbjct: 151 EIRMEAIQTALKQHEPAVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRMAKQMGIAM 210
Query: 334 LLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQL 393
+L GHVTK G IAGPRVLEH+VD VLY EG++ S+YR++R++KNRFG+ +ELGVF M++
Sbjct: 211 ILVGHVTKDGAIAGPRVLEHMVDTVLYFEGDQHSNYRMIRAIKNRFGAANELGVFAMTEH 270
Query: 394 GLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNG 451
GL+ VSNPS IFL+ D + G V V +GSR L+EIQAL G T R G
Sbjct: 271 GLKGVSNPSAIFLASYRDD---VPGSCVLVTQEGSRPLLVEIQALVDDAHGFTPKRLTVG 327
Query: 452 IQASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPN 511
++ +R M+++VL + AG+ + +FLN V GV + E A DLA+ A+ SSF P+P
Sbjct: 328 LEQNRLAMLLAVLNRHAGIACFDQDVFLNAVGGVKINEPAADLAIILAMLSSFRNRPLPE 387
Query: 512 GIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKN 571
+ GE+GL GE+R V+R ++R+ KLG+++ IVPK A F + G +
Sbjct: 388 KMVAFGEVGLSGEVRPVARGQERLKEAEKLGFKRAIVPK-ANLPRNPKDFPGLLIYGVNS 446
Query: 572 LKEVINVV 579
L+E +++V
Sbjct: 447 LQEAVDIV 454
>gi|374338894|ref|YP_005095611.1| DNA repair protein RadA [Streptococcus macedonicus ACA-DC 198]
gi|372285011|emb|CCF03339.1| DNA repair protein RadA [Streptococcus macedonicus ACA-DC 198]
Length = 433
Score = 336 bits (861), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 194/455 (42%), Positives = 272/455 (59%), Gaps = 26/455 (5%)
Query: 129 WGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRLLEVNKGMKQLDWRIPL 188
G C C S + + + V T KP +++ V + ++ +D
Sbjct: 1 MGRCPNCSSWTSFVEEVEVQEVKNARVSLTGEKSKPTKLKDVSSIHYSRTKTDMD----- 55
Query: 189 SGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSG 248
E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ +AD V+YVSG
Sbjct: 56 ------EFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSIQLAD------KGTVLYVSG 103
Query: 249 EESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGS 308
EES EQI R++R+ E +LY+ T+++ I +++ + P LIIDSIQT+ ++G
Sbjct: 104 EESAEQIKLRSERLGNIDNEFYLYAETNMQAIRAQIEQIQPDFLIIDSIQTIMSPDISGV 163
Query: 309 AGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSS 368
G + QV+E T+ L++ AK NI + GHVTK G +AGPR+LEH+VD VLY EGE+ +
Sbjct: 164 QGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGQLAGPRMLEHMVDTVLYFEGERHHT 223
Query: 369 YRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGS 428
+R+LR+VKNRFGST+E+G+FEM GL V NPS++FL E+ + G A+ V M+GS
Sbjct: 224 FRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGA---TGSAIVVTMEGS 280
Query: 429 RSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGLKLQENAIFLNVVSGVA 486
R L E+QAL R G+ +R +I++VL K+ GL LQ +L GV
Sbjct: 281 RPILAEVQALVTPTVFGNAKRTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVK 340
Query: 487 LTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKC 546
L E A DLAVA AI SS+ E P AFIGEIGL GE+R V+R+E+R++ AKLG+ K
Sbjct: 341 LDEPAIDLAVAVAIASSYKEKPTNPQEAFIGEIGLTGEIRRVTRIEQRINEAAKLGFTKV 400
Query: 547 IVPKSAEKSLATLGF-EQMEFIGCKNLKEVINVVF 580
PK+ SL+ + + ++ IG + EV+ VF
Sbjct: 401 YAPKN---SLSGIDIPDNIQVIGVTTVGEVLKQVF 432
>gi|188590035|ref|YP_001919646.1| DNA repair protein RadA [Clostridium botulinum E3 str. Alaska E43]
gi|188500316|gb|ACD53452.1| DNA repair protein RadA [Clostridium botulinum E3 str. Alaska E43]
Length = 455
Score = 336 bits (861), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 194/473 (41%), Positives = 279/473 (58%), Gaps = 27/473 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
++ ++C CGY +W G C +C + T ++ D+ VV + QP +
Sbjct: 5 KSTYICQQCGYEAPKWLGKCPSCNNWNT---FNEEIKDDNKVVTSLKANNIVQNNQPKNI 61
Query: 173 LEVNKGMKQ-LDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAII 231
++ G K+ D I E+ RVLGGGLV GSL LI GDPG+GKSTLLLQ A I
Sbjct: 62 RDIKSGEKERYDTGI-------RELNRVLGGGLVKGSLTLISGDPGIGKSTLLLQTANNI 114
Query: 232 ADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRA 291
A + V+YVSGEES EQI R DR+ + +E LF+ S T+++ I ++ ++P
Sbjct: 115 ALKY-----GKVLYVSGEESEEQIKIRGDRLGVNSENLFIISETNLDAISIYIEQINPNF 169
Query: 292 LIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVL 351
+IIDSIQTV+ V+ + G + QVKEC++ ++R K NIP L HVTK G++AGPRVL
Sbjct: 170 VIIDSIQTVFKESVSSAPGSVSQVKECSNTIMRICKGKNIPFFLVAHVTKQGELAGPRVL 229
Query: 352 EHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHS 411
EH+VD VLY EGE+ YR+LR++KNRFG+T E+GVFEM Q GL V +PSKIFL + +
Sbjct: 230 EHMVDTVLYFEGERTEEYRILRTMKNRFGTTSEIGVFEMQQEGLIEVFDPSKIFLEDTSA 289
Query: 412 DSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVLMKQAG 469
+ E G V +M+G+R LIEIQAL R GI R +I++VL K+
Sbjct: 290 NQE---GSVVVGVMEGTRPILIEIQALVSETKAPMPRRTAVGIDNQRLSLILAVLEKKLK 346
Query: 470 LKLQENAIFLNVVSGVALTETAGDLAVAAAICSSF--LEFPIPNGIAFIGEIGLGGELRM 527
+ +++NVV G+ + T+ DL +A A+ SS EF + + +GE+GL GE+R
Sbjct: 347 VFFYNKDVYVNVVGGLNIDGTSADLGLALALISSVKSKEFKLDKTL-IVGEVGLTGEIRP 405
Query: 528 VSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+S E+ V KLG++ I+P ++L + E ++ IG + L E IN +F
Sbjct: 406 ISSAERLVKEAEKLGFKNVIIPA---RNLDKIKTEDIKVIGIRYLIEAINKIF 455
>gi|425456891|ref|ZP_18836597.1| DNA repair protein radA homolog [Microcystis aeruginosa PCC 9807]
gi|389801911|emb|CCI18985.1| DNA repair protein radA homolog [Microcystis aeruginosa PCC 9807]
Length = 508
Score = 336 bits (861), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 194/475 (40%), Positives = 281/475 (59%), Gaps = 51/475 (10%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKP------E 165
+RT ++CS CG QW G C +C++ GT++ + + W +P
Sbjct: 4 SRTIYICSACGAESPQWLGKCPSCDTYGTLEEQVMAGGNNPAGNRPGWQNSRPNNGKGQR 63
Query: 166 EVQP---VRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKST 222
QP VR E+ + ++ R P SG E RVLGGG+VPGSLVLIGGDPG+GKST
Sbjct: 64 NPQPRISVRFSEITQYEQE---RFP-SGY--GEFDRVLGGGIVPGSLVLIGGDPGIGKST 117
Query: 223 LLLQMAAIIADVHDLGEPSP-VVYVSGEESVEQIGNRADRMMIAT--------------- 266
LLLQ+ + L + P ++YVS EES +QI RA R+ +
Sbjct: 118 LLLQV------TNQLAQRLPRILYVSAEESGQQIKLRAARLGVGVVPVESENNGNGKENK 171
Query: 267 ---------EELFLYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKE 317
L++ TD+E+I+ +++ L P+ +IDSIQT+Y + + G + QV+E
Sbjct: 172 ASESTAELDNHLYVLPETDLEEILRELESLRPQVAVIDSIQTLYFGALTSAPGSVAQVRE 231
Query: 318 CTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKN 377
CTSAL++ AK+ NI +L+ GHVTK G IAGPRVLEH+VD VLY EG++++S+RLLRSVKN
Sbjct: 232 CTSALMQVAKRENITLLIVGHVTKEGAIAGPRVLEHLVDTVLYFEGDRYASHRLLRSVKN 291
Query: 378 RFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQA 437
RFG+T E+G+FEM GL V NPS++FL + EF G A V +G+R ++E+QA
Sbjct: 292 RFGATHEIGIFEMVDHGLVEVENPSELFLGNR---DEFSPGTATVVACEGTRPIVVELQA 348
Query: 438 LCVSGSTVS--RHVNGIQASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLA 495
L S S R GI+ +R I++VL K+ G+ L + ++ G+ + E A DL
Sbjct: 349 LVSPTSYASPRRSTTGIEYNRLQQILAVLEKRVGIPLSKLDAYVASAGGLGVEEPAADLG 408
Query: 496 VAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPK 550
VA A+ +SF + + IGE+GLGG++R+VS+ME R+ AKLG+++ IVP+
Sbjct: 409 VAIAVVASFRDRVVDPRTVLIGEVGLGGQVRLVSQMELRLKEAAKLGFKRAIVPR 463
>gi|425444993|ref|ZP_18825033.1| DNA repair protein radA homolog [Microcystis aeruginosa PCC 9443]
gi|389735142|emb|CCI01328.1| DNA repair protein radA homolog [Microcystis aeruginosa PCC 9443]
Length = 508
Score = 336 bits (861), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 194/475 (40%), Positives = 281/475 (59%), Gaps = 51/475 (10%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKP------E 165
+RT ++CS CG QW G C +C++ GT++ + + W +P
Sbjct: 4 SRTIYICSACGAESPQWLGKCPSCDTYGTLEEQVMAGGNNPAGNRPGWQNSRPNNGKGQR 63
Query: 166 EVQP---VRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKST 222
QP VR E+ + ++ R P SG E RVLGGG+VPGSLVLIGGDPG+GKST
Sbjct: 64 NPQPRISVRFSEITQYEQE---RFP-SGY--GEFDRVLGGGIVPGSLVLIGGDPGIGKST 117
Query: 223 LLLQMAAIIADVHDLGEPSP-VVYVSGEESVEQIGNRADRMMIAT--------------- 266
LLLQ+ + L + P ++YVS EES +QI RA R+ +
Sbjct: 118 LLLQV------TNQLAQRLPRILYVSAEESGQQIKLRAARLGVGVVPVESENNGNGKENK 171
Query: 267 ---------EELFLYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKE 317
L++ TD+E+I+ +++ L P+ +IDSIQT+Y + + G + QV+E
Sbjct: 172 ASESTAELDNHLYVLPETDLEEILRELESLRPQVAVIDSIQTLYFGALTSAPGSVAQVRE 231
Query: 318 CTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKN 377
CTSAL++ AK+ NI +L+ GHVTK G IAGPRVLEH+VD VLY EG++++S+RLLRSVKN
Sbjct: 232 CTSALMQVAKRENITLLIVGHVTKEGAIAGPRVLEHLVDTVLYFEGDRYASHRLLRSVKN 291
Query: 378 RFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQA 437
RFG+T E+G+FEM GL V NPS++FL + EF G A V +G+R ++E+QA
Sbjct: 292 RFGATHEIGIFEMVDHGLVEVENPSELFLGNR---DEFSPGTATVVACEGTRPIVVELQA 348
Query: 438 LCVSGSTVS--RHVNGIQASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLA 495
L S S R GI+ +R I++VL K+ G+ L + ++ G+ + E A DL
Sbjct: 349 LVSPTSYASPRRSTTGIEYNRLQQILAVLEKRVGIPLSKLDAYVASAGGLGVEEPAADLG 408
Query: 496 VAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPK 550
VA A+ +SF + + IGE+GLGG++R+VS+ME R+ AKLG+++ IVP+
Sbjct: 409 VAIAVVASFRDRVVDPRTVLIGEVGLGGQVRLVSQMELRLKEAAKLGFKRAIVPR 463
>gi|348026598|ref|YP_004766403.1| DNA repair protein radA [Megasphaera elsdenii DSM 20460]
gi|341822652|emb|CCC73576.1| DNA repair protein radA [Megasphaera elsdenii DSM 20460]
Length = 459
Score = 336 bits (861), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 186/471 (39%), Positives = 283/471 (60%), Gaps = 21/471 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T +VC++CG +W G C C TM + E P ++ P Q L
Sbjct: 5 KTRYVCTNCGSVSSRWLGRCPQCGEWNTMTEETV--EPEAPKAAQSMARSGPAS-QAASL 61
Query: 173 LEVN-KGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAII 231
++ + M +++ I E+ RVLGGG+VPG+L+L+ GDPG+GKSTL+LQ+AA +
Sbjct: 62 ADIAMEDMARMETGI-------GELDRVLGGGIVPGALILLSGDPGIGKSTLVLQLAAAV 114
Query: 232 ADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRA 291
+ + V+Y SGEES QI RA R+ I+T +L + + T +++I+++ + P
Sbjct: 115 CEKN-----GSVLYGSGEESAGQIKMRAQRLGISTPQLIIQADTSLDNILDEAKRRRPAL 169
Query: 292 LIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVL 351
L++DSIQT+Y R + G+ G L Q++E TS L+ FAK IPV++ GHVTK G IAGPR++
Sbjct: 170 LVVDSIQTMYSRDIEGTPGSLAQIREGTSRLMTFAKSEGIPVVVIGHVTKDGAIAGPRMM 229
Query: 352 EHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHS 411
EH+VD VLY EGE+ +R+LR +KNRFGST+E G+F M+ GL + NPS++ L+E+ +
Sbjct: 230 EHMVDVVLYFEGERNYQFRILRGIKNRFGSTNESGLFTMTSGGLSELENPSQLLLAERAA 289
Query: 412 DSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAG 469
D AG AVA ++DG R L EIQAL + R +G+ +R ++++VL K+ G
Sbjct: 290 DQ---AGSAVAAVLDGMRPMLGEIQALTAHSVFAVPRRTASGMDYNRLIILLAVLEKRLG 346
Query: 470 LKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVS 529
+ L +++NVV G+ LTETA DL VA A+ SS + + + +GE+GL G++R V
Sbjct: 347 VPLGSQDVYINVVGGLRLTETAADLPVALAVYSSLRDISMDSRTVVMGEVGLTGDIRRVP 406
Query: 530 RMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+ +RV AK+G+ I+PK + + F F+G L+E I F
Sbjct: 407 QALRRVKEAAKMGFNTFILPKGNLEDIEKDKFPDCHFLGVATLREAIEKAF 457
>gi|27262420|gb|AAN87491.1| DNA repair protein RadA [Heliobacillus mobilis]
Length = 460
Score = 336 bits (861), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 201/480 (41%), Positives = 281/480 (58%), Gaps = 40/480 (8%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTM-KRYSAGESDEGPVVQRTWLP--------QK 163
+T + CS+CG +W G C C + ++ + A S +G + QR K
Sbjct: 7 KTRFFCSECGQESLKWMGRCSGCGAWNSLVEERIAKSSGDGALSQRYGAAANGAVVHVDK 66
Query: 164 PEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTL 223
E + +RL + G+ +LD RVLGGGLV GSL L+ GDPG+GKSTL
Sbjct: 67 AEVTENIRL---STGISELD--------------RVLGGGLVAGSLTLLAGDPGIGKSTL 109
Query: 224 LLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEK 283
LLQ A IAD V+YVSGEESV+QI RA R+ + EL+L + T+I+ I +
Sbjct: 110 LLQAAQKIAD-----NGGRVLYVSGEESVQQIKLRAARLGVQGVELYLLAETNIQTICDS 164
Query: 284 VQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSG 343
++ P +IIDSIQT+Y + + G + QV+ECT LLR AK + + L GHVTK G
Sbjct: 165 IRECKPVWVIIDSIQTMYWDEIGSAPGNVAQVRECTGQLLRLAKDLPVAMTLVGHVTKDG 224
Query: 344 DIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSK 403
IAGPR+LEH+VDAVLY+EGE+ YR+LR VKNRFGST+ELG+FEM G+ V NPS
Sbjct: 225 AIAGPRLLEHMVDAVLYLEGERHYLYRVLRGVKNRFGSTNELGIFEMLGQGMVEVPNPSA 284
Query: 404 IFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVS---RHVNGIQASRADMI 460
FL+E+ ++ ++G V M+G+R L+E+QAL V+ +T R G+ +R ++
Sbjct: 285 FFLAER---TQGVSGSVVVPCMEGTRPVLVEVQAL-VTPTTFGQPRRMATGMDYNRTVLL 340
Query: 461 ISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIG 520
+VL K+ GL L + I++NV G+ L E A DLAV AI SS+ P + IGE+G
Sbjct: 341 AAVLDKKVGLHLGQQDIYVNVAGGLKLAEPASDLAVVTAIASSWRNRPADPEVVVIGEVG 400
Query: 521 LGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
L GE+R V+ +EKR++ KLG+ +C+ PK K L ME I + + E + V
Sbjct: 401 LTGEVRAVTHLEKRINESVKLGFSRCVCPKQNRKYLRE--ETGMEVIAVETVDEALAAVL 458
>gi|385813154|ref|YP_005849547.1| DNA repair protein radA [Lactobacillus helveticus H10]
gi|323465873|gb|ADX69560.1| DNA repair protein radA [Lactobacillus helveticus H10]
Length = 458
Score = 336 bits (861), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 189/471 (40%), Positives = 276/471 (58%), Gaps = 21/471 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T + C CGY + G C C + ++ + + L QK +PV L
Sbjct: 5 KTQYKCRSCGYISASYLGRCPNCGAWNQFEKETEEVQKRSTKATASRLIQKTGLNEPVHL 64
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
+K + + RIP E+ RVLGGG+VPGSLVLIGGDPG+GKSTL+L + +
Sbjct: 65 ---DKIKAEKEERIPTKS---EELNRVLGGGIVPGSLVLIGGDPGIGKSTLMLHIMS--- 115
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
DL E V+YVSGEES QI RADR+ + + LY TD+ DI E++ + P +
Sbjct: 116 ---DLAEKYKVLYVSGEESANQIKLRADRLGVGQSNMLLYPETDMHDIREQINDVKPDFV 172
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
+IDSIQT+ + G QV+E TS L++ AK I V + GHVTK G IAGP++LE
Sbjct: 173 VIDSIQTMNEPSLDSMTGSASQVREVTSELMKIAKMDAITVFVIGHVTKEGAIAGPKILE 232
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EG++ +YR+L SVKNRFG+ +E+G+FEM GL+ V+NPS IFL ++ +
Sbjct: 233 HMVDTVLYFEGDEHHTYRILHSVKNRFGAANEIGMFEMENEGLREVTNPSSIFLDQRLPN 292
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMKQAGL 470
S G AV V ++G+R L EIQAL + R +GI ++A ++++VL K+ L
Sbjct: 293 S---TGSAVVVSLEGTRPLLAEIQALVTPTAFGYAKRTTSGISFNKASLLLAVLEKRGNL 349
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ ++L G+ L E A DLA+A + SS+ + I F+GE+GL GE+R V +
Sbjct: 350 MLQNQDVYLTATGGIKLNEPAIDLAIAMSAASSYTDKEISPTDCFVGEVGLTGEVRRVDK 409
Query: 531 MEKRVSTVAKLGYRKCIVPK-SAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+E RV AK+G+++ +PK + +SL G +E I ++ + + +VF
Sbjct: 410 IEARVKEAAKVGFKRIFIPKHNMYQSLTENG---IEVIPVASIPQALKLVF 457
>gi|386390009|ref|ZP_10074806.1| DNA repair protein RadA [Haemophilus paraphrohaemolyticus HK411]
gi|385694051|gb|EIG24677.1| DNA repair protein RadA [Haemophilus paraphrohaemolyticus HK411]
Length = 459
Score = 336 bits (861), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 187/476 (39%), Positives = 285/476 (59%), Gaps = 28/476 (5%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRAC---ESVGTMKRYSAGESDEGPVVQRTWLPQKPEE 166
KA +T +VCSDCG +W G C+ C ++ ++ SA ES + + + +
Sbjct: 3 KAPKTAYVCSDCGAEYSKWMGQCKECYAWNTISEIRLVSAKESKKNDRFS-GYAGETSGK 61
Query: 167 VQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQ 226
VQ + + + + +P NE+ RVLGGG+VPGS +LIGG PG GKSTLLLQ
Sbjct: 62 VQALSEISLQE--------VPRFSSGFNELDRVLGGGVVPGSAILIGGHPGAGKSTLLLQ 113
Query: 227 MAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQP 286
+ L + P +YV+GEES++Q+ RA+R+ + TE L + S T +E I
Sbjct: 114 VMC------GLSKEIPTLYVTGEESLQQVAMRANRLGLPTEHLKMLSETSVEHICNIADQ 167
Query: 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIA 346
P+ ++IDSIQ ++L + S G + QV+EC S L R+AK + +++ GHVTK G +A
Sbjct: 168 EKPKIMVIDSIQVMHLSDIQSSPGSVSQVRECASFLTRYAKTRQVAIIMVGHVTKDGTLA 227
Query: 347 GPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFL 406
GP+VLEH +DA L +EGE S YR LRS KNRFG+ +ELGVF M++ GL+ V NPS IFL
Sbjct: 228 GPKVLEHAIDASLLLEGESDSRYRTLRSQKNRFGAVNELGVFAMTEQGLREVKNPSAIFL 287
Query: 407 SEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVS---RHVNGIQASRADMIISV 463
S E ++G +V V+ +G+R L+EIQAL V S ++ R G+ +R ++++V
Sbjct: 288 SRSE---EQVSGSSVVVLWEGTRPLLVEIQAL-VDHSMLANPRRVAVGLDHNRLSLLLAV 343
Query: 464 LMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGG 523
L + GL++ + +F+NVV GV +TET+ DL + ++ SSF P+P + GE+GL G
Sbjct: 344 LHRHGGLQMSDQDVFVNVVGGVKVTETSADLTLILSLISSFRNRPLPQDLVIFGEVGLAG 403
Query: 524 ELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVV 579
E+R V ++R+S AK G+++ IVP ++ + ME G K L + ++++
Sbjct: 404 EIRPVPSGQERISEAAKHGFKRAIVPFG---NMPKKSIKGMEVFGVKKLSDALDIL 456
>gi|373115300|ref|ZP_09529476.1| DNA repair protein RadA [Lachnospiraceae bacterium 7_1_58FAA]
gi|371670592|gb|EHO35671.1| DNA repair protein RadA [Lachnospiraceae bacterium 7_1_58FAA]
Length = 457
Score = 336 bits (861), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 196/479 (40%), Positives = 286/479 (59%), Gaps = 36/479 (7%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTM--------KRYSAGESDEGPVVQRTWLPQKP 164
+T + C++CG +W G C AC + T+ KR +A S G ++ T +P
Sbjct: 4 KTLFYCTECGNETPKWSGQCPACRAWNTLVERPAEPKKRSAAAASVAGGGLRGTGNRPRP 63
Query: 165 -EEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTL 223
EV+ L GM +LD RVLGGG V GSLVL+GG PG+GKSTL
Sbjct: 64 MREVETTHELRFETGMNELD--------------RVLGGGAVKGSLVLVGGAPGIGKSTL 109
Query: 224 LLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEK 283
+LQ+ +L + V+YVSGEES QI RA+R+ + E ++L + T++ED++E
Sbjct: 110 MLQIC------DNLCRFASVLYVSGEESERQIKLRAERLHVRGEGMYLLAETNLEDVLES 163
Query: 284 VQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSG 343
V L P LI+DSIQT+Y + + G + QVK+CT AL++ AK I V + GHV K G
Sbjct: 164 VNELKPDVLIVDSIQTLYNGDLTTAPGSVGQVKDCTMALMQLAKGQGITVFVIGHVNKEG 223
Query: 344 DIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSK 403
IAGP+VLEH+VD VLY EGE+ +SYR+LR+ KNRFG+T+E+GVFEM GL V NPS+
Sbjct: 224 SIAGPKVLEHMVDCVLYFEGEQQNSYRILRAAKNRFGATNEIGVFEMEDSGLSEVPNPSE 283
Query: 404 IFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMII 461
+ LS + D+ G V +M+G R L E+QAL S + R NG +RA++++
Sbjct: 284 MLLSGRPQDT---PGTCVTCVMEGVRPVLAEVQALLAPTSFNVPRRTANGFDFNRANLLL 340
Query: 462 SVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGL 521
+VL K+ GL + ++NV+ G+ L E A DLA+ A+ SSF + P+ +A IGE+GL
Sbjct: 341 AVLEKRGGLMVSSCDAYINVIGGLFLDEPAADLAMIVALASSFRDKPVSGDLAAIGEVGL 400
Query: 522 GGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
GELR V+ + +R+S V +LG+ KC++P L T + ++ I +N++E + +
Sbjct: 401 TGELRSVNALGQRLSEVRRLGFTKCLIPARTGGKLDTP--DGLQLIPVRNIREALAALL 457
>gi|335998609|ref|ZP_08564519.1| DNA repair protein RadA [Lactobacillus ruminis SPM0211]
gi|335348063|gb|EGM49571.1| DNA repair protein RadA [Lactobacillus ruminis SPM0211]
Length = 457
Score = 336 bits (861), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 190/474 (40%), Positives = 280/474 (59%), Gaps = 27/474 (5%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTM--KRYSAGESDEGPVVQRTWLPQKPEEVQP 169
++T +VC CGY ++ G C C T+ + + P V + KP+ +
Sbjct: 4 SKTRFVCQTCGYVSPRYLGRCPNCGEWNTLVEEIEESKNVQTAPRVTFSGTKVKPQLIDA 63
Query: 170 VRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAA 229
+ E + + + E+ RVLGGG+VP S+VLIGGDPG+GKST+LLQ++
Sbjct: 64 ISTRETPRIVTK-----------NAELNRVLGGGIVPSSMVLIGGDPGIGKSTMLLQLSG 112
Query: 230 IIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSP 289
+AD+ V+YVSGEES QI RADR+ + E +LY TD++ I++ V+ L P
Sbjct: 113 ELADMG-----GKVLYVSGEESANQIKMRADRLGVGGSEFYLYPETDMQSILQNVEDLKP 167
Query: 290 RALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPR 349
++IDS+QT+ + + G + Q++ T++L++ AK I V + GHVTK G IAGP+
Sbjct: 168 DYVVIDSVQTMQDPELTSAVGSVAQIRSVTASLMQVAKVNGITVFIVGHVTKGGAIAGPK 227
Query: 350 VLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQ 409
+LEH+VD VLY EG+ +YR+LR+VKNRFGST+E+GVFEM + GL V NPS+IFL E+
Sbjct: 228 ILEHMVDTVLYFEGDMHRTYRILRAVKNRFGSTNEIGVFEMREDGLNEVKNPSEIFLEER 287
Query: 410 HSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMKQ 467
+ G +V V M+G+R L E+QAL + R NG+ +R +I++VL K+
Sbjct: 288 LQGA---TGSSVVVSMEGTRPILAEVQALVTPTAFGNAKRTTNGLDHNRVSLIMAVLEKR 344
Query: 468 AGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRM 527
+GL LQ +L GV L E A DLAVA +I SS+ + FIGE+GL GE+R
Sbjct: 345 SGLLLQNQDAYLKAAGGVKLDEPAIDLAVAMSIVSSYRDEETLATDCFIGELGLTGEVRR 404
Query: 528 VSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGF-EQMEFIGCKNLKEVINVVF 580
V R++ RV AKLG+++ VPK+ +L F ++ +G + L E + VF
Sbjct: 405 VGRIDARVKEAAKLGFKRAFVPKN---NLDGWEFPSNIQVVGVQTLNETLRQVF 455
>gi|116490415|ref|YP_809959.1| DNA repair protein RadA [Oenococcus oeni PSU-1]
gi|116091140|gb|ABJ56294.1| DNA replication and repair protein RadA [Oenococcus oeni PSU-1]
Length = 470
Score = 336 bits (861), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 191/479 (39%), Positives = 280/479 (58%), Gaps = 42/479 (8%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTM----------KRYSAGESDEGPVVQRTWLPQ 162
+T ++CS+CGYT ++ G C C T+ A S +G V + P+
Sbjct: 5 KTQFICSNCGYTSARYLGRCPNCGQWNTLIEEKIVPEAVVNRKARISFDGRVAK----PK 60
Query: 163 KPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKST 222
K E+ L G+++L+ RVLGGG+VPGSL+LIGGDPG+GKST
Sbjct: 61 KISEISGNELPRTRTGLRELN--------------RVLGGGIVPGSLILIGGDPGIGKST 106
Query: 223 LLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVE 282
L+LQ++ +A+ V+YVSGEES QI RADR+ + ++ +Y TD+E I
Sbjct: 107 LMLQVSGQLAE-----NGGSVLYVSGEESDNQIKLRADRLGVGSDSFIVYPETDMEQIKS 161
Query: 283 KVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKS 342
VQ + P L+IDS+QT+ + G + Q++E T+ L++ AK I V + GHVTK
Sbjct: 162 IVQQIEPDYLVIDSVQTMQEPDLQSPIGSVAQIREVTANLMQIAKTNAITVFIVGHVTKD 221
Query: 343 GDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPS 402
G IAGP++LEH+VD VLY EG+ YR+LR+VKNRFGST+ELG+FEM GL+ V+NPS
Sbjct: 222 GSIAGPKILEHMVDTVLYFEGDANYKYRILRTVKNRFGSTNELGIFEMRDHGLREVANPS 281
Query: 403 KIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMI 460
+IFL E+ + + G A+ M+GSR L+E+QAL R G+ +R I
Sbjct: 282 EIFLEERLAGA---TGSAITASMEGSRPILVEVQALVAPTVFGNAQRVTTGVDRNRVSQI 338
Query: 461 ISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIG 520
++VL K A L LQ + + GV + E A DLA+A A+ SS+ E F+GE+G
Sbjct: 339 LAVLEKHANLLLQNQDAHVRITGGVKIDEPAADLAIALAVASSYHEKATNASDVFLGEVG 398
Query: 521 LGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQ-MEFIGCKNLKEVINV 578
LGGE+R +S +E R+ +AKLG+++ IV K+ +LA + + ++ IG L+E + +
Sbjct: 399 LGGEVRSISLIEDRLKEIAKLGFKRAIVSKN---NLAGIDLPKGLQVIGVSTLEEALKL 454
>gi|161506924|ref|YP_001576878.1| DNA repair protein RadA [Lactobacillus helveticus DPC 4571]
gi|160347913|gb|ABX26587.1| putative DNA repair protein RadA [Lactobacillus helveticus DPC
4571]
Length = 458
Score = 336 bits (861), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 189/471 (40%), Positives = 276/471 (58%), Gaps = 21/471 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T + C CGY + G C C + ++ + + L QK +PV L
Sbjct: 5 KTQYKCRSCGYISASYLGRCPNCGAWNQFEKETEEVQKRSTKATASRLIQKTGLNEPVHL 64
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
+K + + RIP E+ RVLGGG+VPGSLVLIGGDPG+GKSTL+L + +
Sbjct: 65 ---DKIKAEKEERIPTKS---EELNRVLGGGIVPGSLVLIGGDPGIGKSTLMLHIMS--- 115
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
DL E V+YVSGEES QI RADR+ + + LY TD+ DI E++ + P +
Sbjct: 116 ---DLAEKYKVLYVSGEESANQIKLRADRLGVGQSNMLLYPETDMHDIREQINDVKPDFV 172
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
+IDSIQT+ + G QV+E TS L++ AK I V + GHVTK G IAGP++LE
Sbjct: 173 VIDSIQTMNEPSLDSMTGSASQVREVTSELMKIAKMDAITVFVIGHVTKEGAIAGPKILE 232
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EG++ +YR+L SVKNRFG+ +E+G+FEM GL+ V+NPS IFL ++ +
Sbjct: 233 HMVDTVLYFEGDEHHTYRILHSVKNRFGAANEIGMFEMENEGLREVTNPSSIFLDQRLPN 292
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMKQAGL 470
S G AV V ++G+R L EIQAL + R +GI ++A ++++VL K+ L
Sbjct: 293 S---TGSAVVVSLEGTRPLLAEIQALVTPTAFGYAKRTTSGISFNKASLLLAVLEKRGNL 349
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ ++L G+ L E A DLA+A + SS+ + I F+GE+GL GE+R V +
Sbjct: 350 MLQNQDVYLTATGGIKLNEPAIDLAIAMSAASSYTDKEISPTDCFVGEVGLTGEVRRVDK 409
Query: 531 MEKRVSTVAKLGYRKCIVPK-SAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+E RV AK+G+++ +PK + +SL G +E I ++ + + +VF
Sbjct: 410 IEARVKEAAKVGFKRIFIPKHNMYQSLTENG---IEVIPVASIPQALELVF 457
>gi|325979283|ref|YP_004288999.1| DNA repair protein radA [Streptococcus gallolyticus subsp.
gallolyticus ATCC BAA-2069]
gi|386338713|ref|YP_006034882.1| DNA repair protein RadA/Sms [Streptococcus gallolyticus subsp.
gallolyticus ATCC 43143]
gi|325179211|emb|CBZ49255.1| DNA repair protein radA [Streptococcus gallolyticus subsp.
gallolyticus ATCC BAA-2069]
gi|334281349|dbj|BAK28923.1| DNA repair protein RadA/Sms [Streptococcus gallolyticus subsp.
gallolyticus ATCC 43143]
Length = 433
Score = 336 bits (861), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 194/455 (42%), Positives = 272/455 (59%), Gaps = 26/455 (5%)
Query: 129 WGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRLLEVNKGMKQLDWRIPL 188
G C C S + + + V T KP +++ V + ++ +D
Sbjct: 1 MGRCPNCSSWTSFVEEVEVQEVKNARVSLTGEKSKPTKLKDVSSIHYSRTKTGMD----- 55
Query: 189 SGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSG 248
E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ +AD V+YVSG
Sbjct: 56 ------EFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSIQLAD------KGTVLYVSG 103
Query: 249 EESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGS 308
EES EQI R++R+ E +LY+ T+++ I +++ + P LIIDSIQT+ ++G
Sbjct: 104 EESAEQIKLRSERLGDIDNEFYLYAETNMQAIRAQIEQIQPDFLIIDSIQTIMSPDISGV 163
Query: 309 AGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSS 368
G + QV+E T+ L++ AK NI + GHVTK G +AGPR+LEH+VD VLY EGE+ +
Sbjct: 164 QGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGQLAGPRMLEHMVDTVLYFEGERHHT 223
Query: 369 YRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGS 428
+R+LR+VKNRFGST+E+G+FEM GL V NPS++FL E+ + G A+ V M+GS
Sbjct: 224 FRILRAVKNRFGSTNEIGIFEMQSGGLVEVINPSQVFLEERLDGA---TGSAIVVTMEGS 280
Query: 429 RSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGLKLQENAIFLNVVSGVA 486
R L E+QAL R G+ +R +I++VL K+ GL LQ +L GV
Sbjct: 281 RPILAEVQALVTPTVFGNAKRTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVK 340
Query: 487 LTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKC 546
L E A DLAVA AI SS+ E P AFIGEIGL GE+R V+R+E+R++ AKLG+ K
Sbjct: 341 LDEPAIDLAVAVAIASSYKEKPTNPQEAFIGEIGLTGEIRRVTRIEQRINEAAKLGFTKV 400
Query: 547 IVPKSAEKSLATLGF-EQMEFIGCKNLKEVINVVF 580
PK+ SL+ + + ++ IG + EV+ VF
Sbjct: 401 YAPKN---SLSDIDIPDNIQVIGVTTVGEVLKQVF 432
>gi|227510719|ref|ZP_03940768.1| DNA repair protein RadA [Lactobacillus brevis subsp. gravesensis
ATCC 27305]
gi|227513733|ref|ZP_03943782.1| DNA repair protein RadA [Lactobacillus buchneri ATCC 11577]
gi|227083052|gb|EEI18364.1| DNA repair protein RadA [Lactobacillus buchneri ATCC 11577]
gi|227189840|gb|EEI69907.1| DNA repair protein RadA [Lactobacillus brevis subsp. gravesensis
ATCC 27305]
Length = 457
Score = 336 bits (861), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 185/446 (41%), Positives = 270/446 (60%), Gaps = 32/446 (7%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAG---ESDEGPVVQRTWLPQ-KPEEVQ 168
+T +VC +CGY ++ G C C T+ + S ++RT + + KPE +
Sbjct: 5 KTQFVCQNCGYISPRYLGRCPNCNEWNTLVEETIAPKSNSTRTAGLRRTGVDEVKPEPLS 64
Query: 169 PVRLL---EVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLL 225
V GM++L+ RVLGGG+VPGSL+LIGGDPG+GKSTL+L
Sbjct: 65 SVTFQSEPRFKTGMEELN--------------RVLGGGVVPGSLILIGGDPGIGKSTLML 110
Query: 226 QMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQ 285
Q++ L ++YVSGEES QI RADR+ + +++L+++ TD+ I +
Sbjct: 111 QVSG------QLSRSGKILYVSGEESASQIKMRADRLDVDSKQLYVFPETDMNVIKSTIS 164
Query: 286 PLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDI 345
+ P A++IDS+QT+ + + + G + Q++E T+ L+ AK I V + GHVTK G I
Sbjct: 165 DMKPDAVVIDSVQTMQIPELQSATGSVAQIREVTADLMNIAKGQGITVFVVGHVTKGGAI 224
Query: 346 AGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIF 405
AGP++LEH+VD VLY EG+ SYR+LR+VKNRFGST+ELGVFEM GL V+NPS+IF
Sbjct: 225 AGPKILEHMVDTVLYFEGDLHHSYRILRTVKNRFGSTNELGVFEMMTDGLHEVTNPSEIF 284
Query: 406 LSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISV 463
L E+ D+ G A+ V M+G+R L+EIQAL + +R G+ +R +I++V
Sbjct: 285 LEERLKDA---TGSAIVVSMEGTRPILVEIQALVTASVFGNATRTATGLDRNRVSLIMAV 341
Query: 464 LMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGG 523
L K+AGL LQ +L GV L E A DLA+A +I SS+ ++GE+GL G
Sbjct: 342 LEKRAGLLLQNQDAYLKAAGGVKLDEPAIDLAIAVSIASSYKNRGTSPTECYVGELGLTG 401
Query: 524 ELRMVSRMEKRVSTVAKLGYRKCIVP 549
E+R V+R+E+RVS KLG+++ +VP
Sbjct: 402 EVRRVTRIEQRVSEAQKLGFKRVLVP 427
>gi|72383335|ref|YP_292690.1| DNA repair protein RadA [Prochlorococcus marinus str. NATL2A]
gi|72003185|gb|AAZ58987.1| DNA repair protein RadA [Prochlorococcus marinus str. NATL2A]
Length = 459
Score = 336 bits (861), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 185/442 (41%), Positives = 269/442 (60%), Gaps = 19/442 (4%)
Query: 116 WVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRLLEV 175
+VC CG Q++G C C ++ + + + + P+E P R +
Sbjct: 8 YVCQSCGAQTRQFFGRCNNCGEWNSIIEEKINQKSDKSIYTKI---NSPKEKSPYRSELI 64
Query: 176 NKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVH 235
++ QL RI SG E+ RVLGGGLVPGSLVLIGGDPG+GKSTL+LQ A
Sbjct: 65 SQTKNQLIERIS-SGY--KELDRVLGGGLVPGSLVLIGGDPGIGKSTLILQSAT------ 115
Query: 236 DLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIID 295
++ V+YV+ EES +Q+ R +R+ A L L + TD+E +++++ L P +ID
Sbjct: 116 EMAHHKSVLYVAAEESAQQVKLRWNRIEDAESNLHLLAETDLEMVIKELDHLKPEVAVID 175
Query: 296 SIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIV 355
SIQ ++ + ++ S G + QV+EC++AL + AK+ NI +L+ GHVTK G +AGP+VLEH+V
Sbjct: 176 SIQALHDQSLSSSPGSVAQVRECSAALQQIAKRQNISLLIIGHVTKDGMLAGPKVLEHLV 235
Query: 356 DAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEF 415
DAVL EG++F+S+RLLR VKNRFG+T ELGVFEM GL V NPS++FLS+ +
Sbjct: 236 DAVLTFEGDRFASHRLLRGVKNRFGATSELGVFEMQADGLSEVPNPSELFLSKTSA---- 291
Query: 416 LAGLAVAVIMDGSRSFLIEIQALCVSGSTVS--RHVNGIQASRADMIISVLMKQAGLKLQ 473
G++ V +G+R I+IQAL S S R GI+ +R I++VL K L L
Sbjct: 292 -PGISTIVTCEGTRPLAIDIQALLNPTSYASPRRTTTGIEINRLHQILAVLEKNMNLSLS 350
Query: 474 ENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEK 533
+L V G+ + E DL +AAAI SS + + G+ FIGEIGL G+LR+V +M++
Sbjct: 351 RYDCYLAVAGGLEVEEPGADLGIAAAIVSSLKDIELEEGVVFIGEIGLAGQLRLVRQMQQ 410
Query: 534 RVSTVAKLGYRKCIVPKSAEKS 555
R++ V +LGY+ I+P + S
Sbjct: 411 RINEVIRLGYKTLIIPDGIDTS 432
>gi|423132838|ref|ZP_17120485.1| DNA repair protein RadA [Myroides odoratimimus CIP 101113]
gi|423328449|ref|ZP_17306256.1| DNA repair protein RadA [Myroides odoratimimus CCUG 3837]
gi|371649595|gb|EHO15072.1| DNA repair protein RadA [Myroides odoratimimus CIP 101113]
gi|404604885|gb|EKB04501.1| DNA repair protein RadA [Myroides odoratimimus CCUG 3837]
Length = 456
Score = 336 bits (861), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 185/471 (39%), Positives = 289/471 (61%), Gaps = 23/471 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEV-QPVR 171
+T + C CG +W G C AC+ T+ + ++ + P ++V +P++
Sbjct: 5 KTAFFCQSCGTQYAKWQGQCNACKEWNTLVEEVIQKEEKTAWKAVSSSPNTMKKVAKPLK 64
Query: 172 LLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAII 231
+ E++ + I ++ + G E+ RVLGGGLVPGS+VL+GG+PG+GKSTLLLQ++
Sbjct: 65 VREIDSTEE-----IRMNTMDG-ELNRVLGGGLVPGSMVLLGGEPGIGKSTLLLQIS--- 115
Query: 232 ADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRA 291
L P +YVSGEES +QI RA+R+ A + ++ + T+ ++I +++ + P
Sbjct: 116 -----LRLPFKTLYVSGEESQKQIKMRAERINPANDNCYILTETNTQNIFRQIEEIQPDV 170
Query: 292 LIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVL 351
LIIDSIQT++ + SAG + Q+KECT+ L +FAK+T PVL+ GH+TK G IAGP++L
Sbjct: 171 LIIDSIQTLHTEYIESSAGTVSQIKECTAELTKFAKETGTPVLIIGHITKDGSIAGPKML 230
Query: 352 EHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHS 411
EH+VD VL EG++ YR+LR+ KNRFGST ELG++EM GL+ VSNPS+I +S H
Sbjct: 231 EHMVDTVLQFEGDRNHVYRILRANKNRFGSTAELGIYEMQGSGLREVSNPSEILIS--HK 288
Query: 412 DSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAG 469
+ E L+G A+A ++G R ++E+QAL + T R G R +MI++VL K+AG
Sbjct: 289 EEE-LSGTAIAATLEGMRPLMVEVQALVSTAVYGTPQRSATGYNLKRLNMILAVLEKRAG 347
Query: 470 LKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVS 529
+L + +FLN+ G+ + + A DL V AAI SS + I F GE+GL GE+R V+
Sbjct: 348 FRLGQKDVFLNITGGITVDDPAIDLGVVAAILSSDQDMSIGKDFTFAGEVGLSGEIRPVN 407
Query: 530 RMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
R+++R+ KLG+ V K + S + G ++ + +++V+ +F
Sbjct: 408 RVDQRIQEAEKLGFSTIFVSKYNKISHTSRG---IKVVLVTKIEDVVEYLF 455
>gi|315224155|ref|ZP_07865995.1| DNA repair protein RadA [Capnocytophaga ochracea F0287]
gi|420158425|ref|ZP_14665243.1| DNA repair protein RadA [Capnocytophaga ochracea str. Holt 25]
gi|314945888|gb|EFS97897.1| DNA repair protein RadA [Capnocytophaga ochracea F0287]
gi|394763774|gb|EJF45844.1| DNA repair protein RadA [Capnocytophaga ochracea str. Holt 25]
Length = 454
Score = 336 bits (861), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 179/440 (40%), Positives = 269/440 (61%), Gaps = 20/440 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T + C +CG +W G C C+ T+ + D P Q P K + + + +
Sbjct: 5 KTAYFCQNCGAQYSKWQGQCYVCKQWNTIVE-EVVQKDTAPAWQEKESPIKSKAPKYISI 63
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
+++ Q + R+ + +E+ VLGGG+VPGS+ L+GG+PG+GKSTLLLQ+A
Sbjct: 64 SQIDT---QQEARLNSNN---HELNNVLGGGIVPGSVTLLGGEPGIGKSTLLLQIA---- 113
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
L +YVSGEES +QI RADR+ + F+ + T ++I ++++ L P +
Sbjct: 114 ----LNLSYRTLYVSGEESEKQIKMRADRIPHKLDNCFILTETKTQNIFQQIKELLPEIV 169
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQT+ + SAG + Q++EC S L++FAK T+ PV+L GH+TK G IAGP++LE
Sbjct: 170 IIDSIQTLQSDYIEASAGSISQIRECASELIKFAKTTHTPVILIGHITKDGQIAGPKILE 229
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VL EG++ YR+LRS+KNRFGST ELG++EM GL+ V+NPS+I +S+
Sbjct: 230 HMVDTVLQFEGDRNHVYRILRSLKNRFGSTSELGIYEMLSNGLREVNNPSEILISK---T 286
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
E ++G ++A ++G R +IEIQAL + T R G A R +M+++VL K+AG
Sbjct: 287 DETISGTSIAATLEGMRPLMIEIQALVSTAVYGTPQRSTTGFNAKRLNMLLAVLEKRAGF 346
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
+L +FLN+ G+ + + A DL VA AI SS + I + F GE+GLGGE+R V R
Sbjct: 347 RLGAKDVFLNITGGITIDDPATDLGVAMAILSSNEDIAIEKDVCFAGEVGLGGEIRPVQR 406
Query: 531 MEKRVSTVAKLGYRKCIVPK 550
+E+R++ KLG+ V K
Sbjct: 407 VEQRITEAEKLGFNTIFVSK 426
>gi|390934091|ref|YP_006391596.1| DNA repair protein RadA [Thermoanaerobacterium saccharolyticum
JW/SL-YS485]
gi|389569592|gb|AFK85997.1| DNA repair protein RadA [Thermoanaerobacterium saccharolyticum
JW/SL-YS485]
Length = 448
Score = 336 bits (861), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 183/472 (38%), Positives = 294/472 (62%), Gaps = 29/472 (6%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQP 169
K ++T +VC CG+ +W G C C+ + +SD+ Q + L K
Sbjct: 2 KKDKTKFVCQQCGFESTKWMGKCPNCDEWNSFVEEVVEDSDKKS--QESILTSK------ 53
Query: 170 VRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAA 229
+E+ K ++ D +G+ +E RVLGGG+V GSLVLIGG+PG+GKST+LLQ++
Sbjct: 54 ---VELLKDIEAKDEDRIKTGI--SEFDRVLGGGVVKGSLVLIGGEPGIGKSTMLLQISD 108
Query: 230 IIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSP 289
++++ + V+Y+SGEES QI RADR++ +E++ + T+I ++ V+ +SP
Sbjct: 109 VMSNF------TKVLYISGEESSSQIKMRADRIIKGKQEIYFLAETNINNVERHVEKISP 162
Query: 290 RALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPR 349
+I+DSIQT+Y G + QV++ T LLR +K+ I V + GHVTK G IAGPR
Sbjct: 163 GFMIVDSIQTMYADESTTIPGSVSQVRQVTQHLLRLSKQNGITVFIIGHVTKEGSIAGPR 222
Query: 350 VLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQ 409
VLEH+VD VLY EG++ S+R+LR+ KNRFGST+E+GVFEM GL+ V NPS++ LS +
Sbjct: 223 VLEHMVDTVLYFEGDRTQSFRILRAYKNRFGSTNEIGVFEMESEGLKEVKNPSEVLLSGR 282
Query: 410 HSDSEFLAGLAVAVIMDGSRSFLIEIQAL-CVSGSTVSRHVN-GIQASRADMIISVLMKQ 467
++ GLAV M+G+R L+E+Q+L C + + R ++ GI ++ ++++VL K+
Sbjct: 283 DLNA---PGLAVISSMEGTRPILLEVQSLICHTNFGLPRRMSTGIDYNKFVLLLAVLEKK 339
Query: 468 AGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRM 527
G+ L ++ ++LN+ G+ + E A DL + AA+ S +L PI N I F GE+GL GE+R
Sbjct: 340 CGINLSQSDVYLNIAGGLKVQEPAADLGIVAALISGYLNIPISNDICFSGEVGLIGEVRP 399
Query: 528 VSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVV 579
VS +E+R+S K+G++ +VP+ ++ + +++ KN+ E+ +V+
Sbjct: 400 VSNLERRISEARKMGFKTIVVPQMKVENSYGMNVKKI-----KNIVELTDVI 446
>gi|416998855|ref|ZP_11939524.1| DNA repair protein RadA [Veillonella parvula ACS-068-V-Sch12]
gi|333977008|gb|EGL77867.1| DNA repair protein RadA [Veillonella parvula ACS-068-V-Sch12]
Length = 457
Score = 336 bits (861), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 185/473 (39%), Positives = 289/473 (61%), Gaps = 24/473 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQ--KPEEVQPV 170
++ + C +CG +W G C C T+ E+ R Q KP + +
Sbjct: 5 KSVFFCQNCGAESSKWMGRCPQCGEWNTLVEEIIKETKHSRTPSRGVGNQTAKPTALPDI 64
Query: 171 RLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAI 230
+ + + +S FG E+ RVLGGG+VPG+L+L+GGDPG+GKSTLLLQ++
Sbjct: 65 EISSIAR----------VSTTFG-EIDRVLGGGIVPGALMLLGGDPGIGKSTLLLQVSQK 113
Query: 231 IADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPR 290
+AD V+Y SGEES Q+ RA+R+ I +E L + + TD++ I+E+ + ++P
Sbjct: 114 VADT-----VGAVLYASGEESQLQLKLRAERLHINSERLQVIADTDLDHILEQAEAMTPS 168
Query: 291 ALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRV 350
L+IDSIQT+Y + + G + QV+ECTS LLRF K+ NIP ++ GHVTK G+IAGPR+
Sbjct: 169 LLVIDSIQTMYTGDIDAAPGSVSQVRECTSRLLRFCKERNIPTVIIGHVTKEGNIAGPRM 228
Query: 351 LEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQH 410
LEH+VD VLY EGE+ +R+LRS+KNRFGST E G+F M + GLQ +SNPS L+E+
Sbjct: 229 LEHMVDVVLYFEGERSYQFRILRSIKNRFGSTSETGIFAMVEEGLQELSNPSASLLAER- 287
Query: 411 SDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMKQA 468
SD E +G AV + ++G R L+E+Q+L V+ + R G +R ++++VL K+
Sbjct: 288 SDEE--SGSAVMIYLEGVRPILVEVQSLVVTTAFGMPRRTAIGYDLNRLIVLLAVLEKRC 345
Query: 469 GLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMV 528
G L +++NV+ G+ + E A DL++A AI S+ +P + +GE+GL G +R +
Sbjct: 346 GFTLGNKDVYVNVIGGLKVNEPACDLSMAVAIVSNLKNRIVPTDMVILGEVGLTGNVRSI 405
Query: 529 SRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVFT 581
R+E+R++ KLG++K I+P+ K + ++ G K+++E + +VF+
Sbjct: 406 PRIEQRINEAKKLGFKKFIIPEGNYKQIKD-NDSSIKIKGVKSIQEAMQLVFS 457
>gi|261493593|ref|ZP_05990113.1| S16 family peptidase/DNA repair protein RadA [Mannheimia
haemolytica serotype A2 str. BOVINE]
gi|261495431|ref|ZP_05991879.1| S16 family peptidase/DNA repair protein RadA [Mannheimia
haemolytica serotype A2 str. OVINE]
gi|261308936|gb|EEY10191.1| S16 family peptidase/DNA repair protein RadA [Mannheimia
haemolytica serotype A2 str. OVINE]
gi|261310775|gb|EEY11958.1| S16 family peptidase/DNA repair protein RadA [Mannheimia
haemolytica serotype A2 str. BOVINE]
Length = 459
Score = 336 bits (861), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 185/478 (38%), Positives = 282/478 (58%), Gaps = 26/478 (5%)
Query: 109 GKANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQR--TWLPQKPEE 166
KA +T +VC+DCG +W G CR C+S T+ S E R + + +
Sbjct: 2 AKAPKTAYVCNDCGAEYSRWMGQCRECKSWNTISEVRLISSKETAKSDRFSGYAGETSGK 61
Query: 167 VQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQ 226
VQ + + + + +P NE+ RVLGGG+VPGS +LIGG PG GKSTLLLQ
Sbjct: 62 VQTLSDISLQE--------VPRFSSGFNELDRVLGGGVVPGSAILIGGHPGAGKSTLLLQ 113
Query: 227 MAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQP 286
+ L + P +YV+GEES++Q+ RA+R+ + T L + S T +E I
Sbjct: 114 VMC------GLAQHLPTLYVTGEESLQQVAMRANRLGLPTANLKMLSETSVEHICNIADQ 167
Query: 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIA 346
P+ ++IDSIQ ++L + S G + QV+EC S L R+AK + +++ GHVTK G +A
Sbjct: 168 EKPKIMVIDSIQVMHLSDIQSSPGSVSQVRECASFLTRYAKTRQVAIIMVGHVTKDGTLA 227
Query: 347 GPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFL 406
GP+VLEH +DA L +EGE S +R LRS KNRFG+ +ELGVF M++ GL+ V NPS IFL
Sbjct: 228 GPKVLEHAIDASLLLEGESDSRFRTLRSQKNRFGAVNELGVFAMTEQGLKEVKNPSAIFL 287
Query: 407 SEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVS---RHVNGIQASRADMIISV 463
S E G +V V+ +G+R L+EIQAL V S ++ R G+ +R ++++V
Sbjct: 288 SR---SEEQTPGSSVMVLWEGTRPLLVEIQAL-VDHSMLANPRRVAVGLDHNRLSLLLAV 343
Query: 464 LMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGG 523
L + GL++ + +F+NVV GV +TET+ DLA+ A+ SSF P+P + GE+GL G
Sbjct: 344 LHRHGGLQMSDQDVFVNVVGGVKVTETSADLALILALISSFRNRPLPQDLVIFGEVGLAG 403
Query: 524 ELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVFT 581
E+R V+ ++R+S AK G+++ I+P ++ + M+ K L + +++++
Sbjct: 404 EIRPVTSGQERISEAAKHGFKRAIIPHG---NVPKKAIKDMQVFTVKKLSDALDILYN 458
>gi|339634836|ref|YP_004726477.1| DNA repair protein RadA [Weissella koreensis KACC 15510]
gi|420160835|ref|ZP_14667606.1| DNA repair protein RadA [Weissella koreensis KCTC 3621]
gi|338854632|gb|AEJ23798.1| DNA repair protein RadA [Weissella koreensis KACC 15510]
gi|394745585|gb|EJF34403.1| DNA repair protein RadA [Weissella koreensis KCTC 3621]
Length = 456
Score = 336 bits (861), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 198/474 (41%), Positives = 283/474 (59%), Gaps = 27/474 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTM--KRYSAGESDEGPVVQRTWLPQKPEEVQPV 170
+T++VCS+CG ++ G C C + GT+ + + + D V K E + V
Sbjct: 5 KTHFVCSNCGDISQRYLGRCSNCGAWGTLVEEEIPSDKVDRKNRVNLAGQVAKVERLNQV 64
Query: 171 RLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAI 230
L EV + +++ E RVLGGG+VPGS+VLIGGDPG+GKSTLLLQ++
Sbjct: 65 ELEEVPRVKTKIE-----------EFNRVLGGGVVPGSMVLIGGDPGIGKSTLLLQVSGQ 113
Query: 231 IADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFL-YSSTDIEDIVEKVQPLSP 289
+A GE V+YVSGEES QI RA+R+ + + FL Y TD+ I + + P
Sbjct: 114 LA-----GE-GVVLYVSGEESAAQIKLRAERLGVEDDHNFLIYPETDMTHIRKAIDDYGP 167
Query: 290 RALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPR 349
+IIDSIQT+ V + G + Q++E T+ LL+ AK I + + GHVTK G IAGP+
Sbjct: 168 EYVIIDSIQTMQQPDVNSAVGSVAQIRETTAELLQIAKTNGITIFVVGHVTKDGAIAGPK 227
Query: 350 VLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQ 409
+LEH+VD VLY EG+ SYRLLR+VKNRFGST+ELGVFEM Q GL V NPS++FL E+
Sbjct: 228 ILEHMVDTVLYFEGDNQRSYRLLRAVKNRFGSTNELGVFEMQQEGLTEVLNPSEMFLEER 287
Query: 410 HSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQ 467
E G AV V ++GSR L+E+QAL R +GI +R +I++VL K+
Sbjct: 288 M---EATTGSAVVVALEGSRPILVEVQALVTPTVFGNAQRTSSGIDRNRVSLIMAVLEKR 344
Query: 468 AGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRM 527
+ LQ ++ GV L E A DLA+A AI SS+ E AF+GEIGL GE+R
Sbjct: 345 TNILLQNQDAYVRAAGGVKLNEPAVDLALAVAIASSYREAETRLTDAFVGEIGLTGEIRR 404
Query: 528 VSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVFT 581
V +E+R++ KLG+++ +PK++ K + L E ++ I + L+E +++ +
Sbjct: 405 VPHIEERITEAQKLGFKRIFIPKNSLKKM--LKIEGIKVITVQTLREALDLALS 456
>gi|428779965|ref|YP_007171751.1| DNA repair protein RadA [Dactylococcopsis salina PCC 8305]
gi|428694244|gb|AFZ50394.1| DNA repair protein RadA [Dactylococcopsis salina PCC 8305]
Length = 495
Score = 336 bits (861), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 196/477 (41%), Positives = 283/477 (59%), Gaps = 49/477 (10%)
Query: 117 VCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWL---------PQKPEEV 167
VCS CG QW+G C +C GT++ ++ P + W +KP +
Sbjct: 9 VCSACGAEHNQWFGKCSSCGQYGTLEEEVQTQAGVNP--RSGWQSNKYATGTEKKKPPQA 66
Query: 168 QPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQM 227
+ L K +Q R P SG E+ RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ+
Sbjct: 67 RVSLLFSQIKDDEQ--PRYP-SGYL--ELDRVLGGGIVPGSLVLIGGDPGIGKSTLLLQV 121
Query: 228 AAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRM--------------------MIATE 267
A A +YVS EES +Q+ RA R+ ++ E
Sbjct: 122 ANQTARTQR------TLYVSAEESGQQVKLRASRLGVGLTNAPEDVAETNGQSPKSLSHE 175
Query: 268 ELFLYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAK 327
L++ TD+E+I+ +++ L P IIDSIQT+Y ++ + G + QV+ECTSAL++ AK
Sbjct: 176 NLYVLPETDLEEILRELESLKPMLGIIDSIQTLYFASLSSAPGSVAQVRECTSALMQLAK 235
Query: 328 KTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGV 387
+ NI +L+ GHVTK G IAGPRVLEH+VD VLY EG++++S+RLLRSVKNRFG+T E+GV
Sbjct: 236 RENITLLIVGHVTKEGAIAGPRVLEHLVDTVLYFEGDRYASHRLLRSVKNRFGATHEIGV 295
Query: 388 FEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVS- 446
FEM GL+ V NPS++FL + E + G A+ V +G+R ++E+QAL S S
Sbjct: 296 FEMIDHGLREVENPSELFLGNR---DESVPGTAIVVACEGTRPIVVELQALVSPTSYTSP 352
Query: 447 -RHVNGIQASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFL 505
R G+ +R I++VL K+ G+ L + ++ G+ + E A DL +A A+ +SF
Sbjct: 353 RRATTGVDYNRLQQILAVLEKRVGIPLSKLDAYVATAGGLGVEEPAADLGIAVAVVASFR 412
Query: 506 EFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFE 562
+ + A IGE+GLGG++R+VS++E R+ AKLG+++ IVP +SL +G E
Sbjct: 413 DRVVDPRTALIGEVGLGGQVRLVSQLELRIKEAAKLGFQRAIVPTG--QSLPDMGIE 467
>gi|347524900|ref|YP_004831648.1| DNA repair protein RadA [Lactobacillus ruminis ATCC 27782]
gi|345283859|gb|AEN77712.1| DNA repair protein RadA [Lactobacillus ruminis ATCC 27782]
Length = 457
Score = 336 bits (861), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 190/475 (40%), Positives = 280/475 (58%), Gaps = 27/475 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTM--KRYSAGESDEGPVVQRTWLPQKPEEVQPV 170
+T +VC CGY ++ G C C T+ + + P V + KP+ + +
Sbjct: 5 KTRFVCQTCGYVSPRYLGRCPNCGEWNTLVEEIEESKNVQTAPRVTFSGTKVKPQLIDAI 64
Query: 171 RLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAI 230
E + + + E+ RVLGGG+VP S+VLIGGDPG+GKST+LLQ++
Sbjct: 65 STKETPRIVTK-----------NAELNRVLGGGIVPSSMVLIGGDPGIGKSTMLLQLSGE 113
Query: 231 IADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPR 290
+AD+ V+YVSGEES QI RADR+ + E +LY TD++ I++ V+ L P
Sbjct: 114 LADMG-----GKVLYVSGEESANQIKMRADRLGVGGSEFYLYPETDMQSILQNVEDLKPD 168
Query: 291 ALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRV 350
++IDS+QT+ + + G + Q++ T++L++ AK I V + GHVTK G IAGP++
Sbjct: 169 YVVIDSVQTMQDPELTSAVGSVAQIRSVTASLMQVAKVNGITVFIVGHVTKGGAIAGPKI 228
Query: 351 LEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQH 410
LEH+VD VLY EG+ +YR+LR+VKNRFGST+E+GVFEM + GL V NPS+IFL E+
Sbjct: 229 LEHMVDTVLYFEGDMHRTYRILRAVKNRFGSTNEIGVFEMREDGLNEVKNPSEIFLEERL 288
Query: 411 SDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMKQA 468
+ G +V V M+G+R L E+QAL + R NG+ +R +I++VL K++
Sbjct: 289 QGA---TGSSVVVSMEGTRPILAEVQALVTPTAFGNAKRTTNGLDHNRVSLIMAVLEKRS 345
Query: 469 GLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMV 528
GL LQ +L GV L E A DLAVA +I SS+ + FIGE+GL GE+R V
Sbjct: 346 GLLLQNQDAYLKAAGGVKLDEPAIDLAVAVSIVSSYRDEETLATDCFIGELGLTGEVRRV 405
Query: 529 SRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGF-EQMEFIGCKNLKEVINVVFTT 582
R++ RV AKLG+++ VPK+ +L F ++ +G + L E + VF +
Sbjct: 406 GRIDARVKEAAKLGFKRAFVPKN---NLDGWEFPSNIQVVGVQTLNETLKQVFKS 457
>gi|294669330|ref|ZP_06734409.1| DNA repair protein RadA [Neisseria elongata subsp. glycolytica ATCC
29315]
gi|291308740|gb|EFE49983.1| DNA repair protein RadA [Neisseria elongata subsp. glycolytica ATCC
29315]
Length = 461
Score = 336 bits (861), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 194/476 (40%), Positives = 279/476 (58%), Gaps = 32/476 (6%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKP--EEV 167
KA +T + C++CG T +W G C C T++ A + Q +W + +
Sbjct: 3 KAPKTIYQCTECGGTSPKWQGKCPHCGEWNTLQENLAAPEPKNARFQ-SWAADTSTVQSL 61
Query: 168 QPVRLLEVNK---GMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLL 224
V EV + GM +LD RVLGGGLV G+++L+GGDPG+GKSTLL
Sbjct: 62 SAVTATEVPRNPTGMGELD--------------RVLGGGLVDGAVILLGGDPGIGKSTLL 107
Query: 225 LQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKV 284
LQ A +A + V+YVSGEES +Q+ RA R+ + TE + L + +E I +
Sbjct: 108 LQTIAKMA------QSRKVLYVSGEESAQQVALRAQRLELPTEGVNLLAEIRMEAIQAAL 161
Query: 285 QPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGD 344
+ P ++IDSIQT+Y + + G + QV+EC + L R AK+ I ++L GHVTK G
Sbjct: 162 KQHQPEVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRMAKQMGIAMILVGHVTKDGA 221
Query: 345 IAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKI 404
IAGPRVLEH+VD VLY EG++ S+YR++R++KNRFG+ +ELGVF M++ GL+ VSNPS I
Sbjct: 222 IAGPRVLEHMVDTVLYFEGDQHSNYRMIRAIKNRFGAANELGVFAMTENGLKGVSNPSAI 281
Query: 405 FLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIIS 462
FL+ D+ G V V +GSR L+EIQAL G T R G++ +R M+++
Sbjct: 282 FLASYRDDT---PGSCVLVTQEGSRPLLVEIQALVDDAHGFTPKRLTVGLEQNRLAMLLA 338
Query: 463 VLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLG 522
VL + G+ + +FLN V GV + E A DLAV A+ SSF P+P + GEIGL
Sbjct: 339 VLNRHGGIACFDQDVFLNAVGGVKIGEPAADLAVILAMLSSFRNRPLPEKMVAFGEIGLS 398
Query: 523 GELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINV 578
GE+R V+R ++R+ KLG+++ IVPK A F ++ G +L+E I +
Sbjct: 399 GEVRPVARGQERLKEAEKLGFKRAIVPK-ANMPRNEKEFPNLKIFGVSSLQEAIEI 453
>gi|118587584|ref|ZP_01545008.1| DNA repair protein RadA [Oenococcus oeni ATCC BAA-1163]
gi|290889823|ref|ZP_06552910.1| hypothetical protein AWRIB429_0300 [Oenococcus oeni AWRIB429]
gi|419757929|ref|ZP_14284254.1| DNA repair protein RadA [Oenococcus oeni AWRIB304]
gi|419857601|ref|ZP_14380307.1| DNA repair protein RadA [Oenococcus oeni AWRIB202]
gi|419859083|ref|ZP_14381740.1| DNA repair protein RadA [Oenococcus oeni DSM 20252 = AWRIB129]
gi|421184372|ref|ZP_15641796.1| DNA repair protein RadA [Oenococcus oeni AWRIB318]
gi|421186168|ref|ZP_15643563.1| DNA repair protein RadA [Oenococcus oeni AWRIB418]
gi|421187883|ref|ZP_15645224.1| DNA repair protein RadA [Oenococcus oeni AWRIB419]
gi|421190165|ref|ZP_15647469.1| DNA repair protein RadA [Oenococcus oeni AWRIB422]
gi|421192145|ref|ZP_15649414.1| DNA repair protein RadA [Oenococcus oeni AWRIB548]
gi|421193105|ref|ZP_15650356.1| DNA repair protein RadA [Oenococcus oeni AWRIB553]
gi|421194402|ref|ZP_15651622.1| DNA repair protein RadA [Oenococcus oeni AWRIB568]
gi|421197251|ref|ZP_15654428.1| DNA repair protein RadA [Oenococcus oeni AWRIB576]
gi|118432035|gb|EAV38777.1| DNA repair protein RadA [Oenococcus oeni ATCC BAA-1163]
gi|290480433|gb|EFD89070.1| hypothetical protein AWRIB429_0300 [Oenococcus oeni AWRIB429]
gi|399905438|gb|EJN92881.1| DNA repair protein RadA [Oenococcus oeni AWRIB304]
gi|399966556|gb|EJO01076.1| DNA repair protein RadA [Oenococcus oeni AWRIB419]
gi|399967656|gb|EJO02129.1| DNA repair protein RadA [Oenococcus oeni AWRIB318]
gi|399967812|gb|EJO02278.1| DNA repair protein RadA [Oenococcus oeni AWRIB418]
gi|399970092|gb|EJO04398.1| DNA repair protein RadA [Oenococcus oeni AWRIB548]
gi|399970965|gb|EJO05255.1| DNA repair protein RadA [Oenococcus oeni AWRIB422]
gi|399973087|gb|EJO07273.1| DNA repair protein RadA [Oenococcus oeni AWRIB553]
gi|399975479|gb|EJO09530.1| DNA repair protein RadA [Oenococcus oeni AWRIB576]
gi|399977820|gb|EJO11791.1| DNA repair protein RadA [Oenococcus oeni AWRIB568]
gi|410497444|gb|EKP88918.1| DNA repair protein RadA [Oenococcus oeni DSM 20252 = AWRIB129]
gi|410497865|gb|EKP89334.1| DNA repair protein RadA [Oenococcus oeni AWRIB202]
Length = 470
Score = 335 bits (860), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 192/479 (40%), Positives = 280/479 (58%), Gaps = 42/479 (8%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTM----------KRYSAGESDEGPVVQRTWLPQ 162
+T +VCS+CGYT ++ G C C T+ A S +G V + P+
Sbjct: 5 KTQFVCSNCGYTSARYLGRCPNCGQWNTLIEEKIVPEAVVNRKARISFDGRVAK----PK 60
Query: 163 KPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKST 222
K E+ L G+++L+ RVLGGG+VPGSL+LIGGDPG+GKST
Sbjct: 61 KISEISGNELPRTRTGLRELN--------------RVLGGGIVPGSLILIGGDPGIGKST 106
Query: 223 LLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVE 282
L+LQ++ +A+ V+YVSGEES QI RADR+ + ++ +Y TD+E I
Sbjct: 107 LMLQVSGQLAE-----NGGSVLYVSGEESDNQIKLRADRLGVGSDSFIVYPETDMEQIKS 161
Query: 283 KVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKS 342
VQ + P L+IDS+QT+ + G + Q++E T+ L++ AK I V + GHVTK
Sbjct: 162 IVQQIEPDYLVIDSVQTMQEPDLQSPIGSVAQIREVTADLMQIAKTNAITVFIVGHVTKD 221
Query: 343 GDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPS 402
G IAGP++LEH+VD VLY EG+ YR+LR+VKNRFGST+ELG+FEM GL+ V+NPS
Sbjct: 222 GSIAGPKILEHMVDTVLYFEGDANYKYRILRTVKNRFGSTNELGIFEMRDHGLREVANPS 281
Query: 403 KIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMI 460
+IFL E+ + + G A+ M+GSR L+E+QAL R G+ +R I
Sbjct: 282 EIFLEERLAGA---TGSAITASMEGSRPILVEVQALVAPTVFGNAQRVTTGVDRNRVAQI 338
Query: 461 ISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIG 520
++VL K A L LQ + + GV + E A DLA+A A+ SS+ E F+GE+G
Sbjct: 339 LAVLEKHANLLLQNQDAHVRITGGVKIDEPAADLAIALAVASSYHEKATNASDVFLGEVG 398
Query: 521 LGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQ-MEFIGCKNLKEVINV 578
LGGE+R +S +E R+ +AKLG+++ IV K+ +LA + + ++ IG L+E + +
Sbjct: 399 LGGEVRSISLIEDRLKEIAKLGFKRAIVSKN---NLAGIDLPKGLQVIGVSTLEEALKL 454
>gi|255065204|ref|ZP_05317059.1| DNA repair protein RadA [Neisseria sicca ATCC 29256]
gi|255050625|gb|EET46089.1| DNA repair protein RadA [Neisseria sicca ATCC 29256]
Length = 459
Score = 335 bits (860), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 194/476 (40%), Positives = 279/476 (58%), Gaps = 32/476 (6%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKP--EEV 167
KA +T + C++CG T +W G C C T++ A + Q +W + +
Sbjct: 3 KAPKTIYQCTECGGTSPKWQGKCPHCGEWNTLQESLAAPEPKNARFQ-SWAADTSTVQSL 61
Query: 168 QPVRLLEVNK---GMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLL 224
V EV + GM +LD RVLGGGLV G+++L+GGDPG+GKSTLL
Sbjct: 62 SAVTATEVPRNPTGMGELD--------------RVLGGGLVDGAVILLGGDPGIGKSTLL 107
Query: 225 LQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKV 284
LQ A +A + V+YVSGEES +Q+ RA R+ + TE + L + +E I +
Sbjct: 108 LQTIAKMA------QSRKVLYVSGEESAQQVALRAQRLELPTEGVNLLAEIRMEAIQTAL 161
Query: 285 QPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGD 344
+ P ++IDSIQT+Y + + G + QV+EC + L R AK+ I ++L GHVTK G
Sbjct: 162 KQHQPEVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRMAKQMGIAMILVGHVTKDGA 221
Query: 345 IAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKI 404
IAGPRVLEH+VD VLY EG++ S+YR++R++KNRFG+ +ELGVF M++ GL+ VSNPS I
Sbjct: 222 IAGPRVLEHMVDTVLYFEGDQHSNYRMIRAIKNRFGAANELGVFAMTENGLKGVSNPSAI 281
Query: 405 FLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIIS 462
FL+ D+ G V V +GSR L+EIQAL G T R G++ +R M+++
Sbjct: 282 FLASYRDDT---PGSCVLVTQEGSRPLLVEIQALVDDAHGFTPKRLTVGLEQNRLAMLLA 338
Query: 463 VLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLG 522
VL + G+ + +FLN V GV + E A DLAV A+ SSF P+P + GEIGL
Sbjct: 339 VLNRHGGIACFDQDVFLNAVGGVKIGEPAADLAVILAMLSSFRNRPLPEKMVAFGEIGLS 398
Query: 523 GELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINV 578
GE+R V+R ++R+ KLG+++ IVPK A F ++ G +L+E I +
Sbjct: 399 GEVRPVARGQERLKEAEKLGFKRAIVPK-ANMPRNEKEFPNLKIFGVSSLQETIEI 453
>gi|284034288|ref|YP_003384219.1| DNA repair protein RadA [Kribbella flavida DSM 17836]
gi|283813581|gb|ADB35420.1| DNA repair protein RadA [Kribbella flavida DSM 17836]
Length = 469
Score = 335 bits (860), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 191/451 (42%), Positives = 279/451 (61%), Gaps = 34/451 (7%)
Query: 106 RKKGKANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDE---GPVVQRTWLPQ 162
+ + KA ++ + CS+CG+T +W G C C++ GT+ A +S GPV P
Sbjct: 7 QTRSKAGKSPFQCSECGWTAARWVGRCGECQAWGTVAEAGAPKSARITAGPVSS----PA 62
Query: 163 KP-EEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKS 221
P +V + G+ +LD RVLGGG+VPG+++L+ G+PGVGKS
Sbjct: 63 MPIAQVSAIEAESRATGIGELD--------------RVLGGGVVPGAVILLAGEPGVGKS 108
Query: 222 TLLLQMAAIIA-DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDI 280
TLLL++AA A + H +YVSGEES Q+ RA R +EL+L + TD+ +
Sbjct: 109 TLLLEVAAQSARNGHR------TLYVSGEESAAQVRLRAGRTDALVDELYLAAETDLSAV 162
Query: 281 VEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVT 340
V +V + P L+IDS+QT+ V G+ GG+ QV+E T AL+R AK+ NI V+L GHVT
Sbjct: 163 VGQVDVVEPAFLVIDSVQTMAHPEVDGAPGGVTQVREVTGALVRLAKERNIAVVLVGHVT 222
Query: 341 KSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSN 400
K G IAGPR+LEH+VD VL +G++ S +R++R+ KNRFG +DE+G F+M G+ VS+
Sbjct: 223 KDGAIAGPRMLEHLVDVVLAFDGDRHSGFRMVRATKNRFGPSDEVGCFDMVDTGIVEVSD 282
Query: 401 PSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRAD 458
P+ +F+SE SE +AG V V+M+G R L E+QAL + R +G+++SR
Sbjct: 283 PTGLFVSEH---SEPVAGTCVTVMMEGRRPLLAEVQALVGPSAAPQPRRTTSGLESSRVA 339
Query: 459 MIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGE 518
M+++VL +AGLKL + +++ V GV +TE DLAVA A+ SS + PI G+ IGE
Sbjct: 340 MVLAVLGNRAGLKLTDQEVYVATVGGVKITEPVADLAVAIAVASSVTDKPIHPGLIAIGE 399
Query: 519 IGLGGELRMVSRMEKRVSTVAKLGYRKCIVP 549
+GL GE+R V +EKR++ A+LG+ K IVP
Sbjct: 400 VGLAGEVRRVGGLEKRLAEAARLGFTKAIVP 430
>gi|261363743|ref|ZP_05976626.1| DNA repair protein RadA [Neisseria mucosa ATCC 25996]
gi|288568316|gb|EFC89876.1| DNA repair protein RadA [Neisseria mucosa ATCC 25996]
Length = 459
Score = 335 bits (860), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 194/476 (40%), Positives = 279/476 (58%), Gaps = 32/476 (6%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKP--EEV 167
KA +T + C++CG T +W G C C T++ A + Q +W + +
Sbjct: 3 KAPKTIYQCTECGGTSPKWQGKCPHCGEWNTLQESLAAPEPKNARFQ-SWAADTSTVQSL 61
Query: 168 QPVRLLEVNK---GMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLL 224
V EV + GM +LD RVLGGGLV G+++L+GGDPG+GKSTLL
Sbjct: 62 SAVTATEVPRNPTGMGELD--------------RVLGGGLVDGAVILLGGDPGIGKSTLL 107
Query: 225 LQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKV 284
LQ A +A + V+YVSGEES +Q+ RA R+ + TE + L + +E I +
Sbjct: 108 LQTIAKMA------QSRKVLYVSGEESAQQVALRAQRLELPTEGVNLLAEIRMEAIQAAL 161
Query: 285 QPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGD 344
+ P ++IDSIQT+Y + + G + QV+EC + L R AK+ I ++L GHVTK G
Sbjct: 162 KQHQPEVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRMAKQMGIAMILVGHVTKDGA 221
Query: 345 IAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKI 404
IAGPRVLEH+VD VLY EG++ S+YR++R++KNRFG+ +ELGVF M++ GL+ VSNPS I
Sbjct: 222 IAGPRVLEHMVDTVLYFEGDQHSNYRMIRAIKNRFGAANELGVFAMTENGLKGVSNPSAI 281
Query: 405 FLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIIS 462
FL+ D+ G V V +GSR L+EIQAL G T R G++ +R M+++
Sbjct: 282 FLASYRDDT---PGSCVLVTQEGSRPLLVEIQALVDDAHGFTPKRLTVGLEQNRLAMLLA 338
Query: 463 VLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLG 522
VL + G+ + +FLN V GV + E A DLAV A+ SSF P+P + GEIGL
Sbjct: 339 VLNRHGGIACFDQDVFLNAVGGVKIGEPAADLAVILAMLSSFRNRPLPEKMVAFGEIGLS 398
Query: 523 GELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINV 578
GE+R V+R ++R+ KLG+++ IVPK A F ++ G +L+E I +
Sbjct: 399 GEVRPVARGQERLKEAEKLGFKRAIVPK-ANMPRNEKEFPNLKIFGVSSLQEAIEI 453
>gi|159027453|emb|CAO89418.1| radA [Microcystis aeruginosa PCC 7806]
Length = 499
Score = 335 bits (860), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 194/475 (40%), Positives = 281/475 (59%), Gaps = 51/475 (10%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKP------E 165
+RT ++CS CG QW G C +C++ GT++ + + W +P
Sbjct: 4 SRTIYICSACGAESPQWLGKCPSCDTYGTLEEQVMAGGNNPAGNRPGWQNSRPNNGKGQR 63
Query: 166 EVQP---VRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKST 222
QP VR E+ + ++ R P SG E RVLGGG+VPGSLVLIGGDPG+GKST
Sbjct: 64 NPQPRISVRFSEITQYEQE---RFP-SGY--GEFDRVLGGGIVPGSLVLIGGDPGIGKST 117
Query: 223 LLLQMAAIIADVHDLGEPSP-VVYVSGEESVEQIGNRADRMMIAT--------------- 266
LLLQ+ + L + P ++YVS EES +QI RA R+ +
Sbjct: 118 LLLQV------TNQLAQRLPRILYVSAEESGQQIKLRAARLGVGVVPVESENNGNGKEKK 171
Query: 267 ---------EELFLYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKE 317
L++ TD+E+I+ +++ L P+ +IDSIQT+Y + + G + QV+E
Sbjct: 172 ASESTAELDNHLYVLPETDLEEILRELESLRPQVAVIDSIQTLYFGALTSAPGSVAQVRE 231
Query: 318 CTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKN 377
CTSAL++ AK+ NI +L+ GHVTK G IAGPRVLEH+VD VLY EG++++S+RLLRSVKN
Sbjct: 232 CTSALMQVAKRENITLLIVGHVTKEGAIAGPRVLEHLVDTVLYFEGDRYASHRLLRSVKN 291
Query: 378 RFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQA 437
RFG+T E+G+FEM GL V NPS++FL + EF G A V +G+R ++E+QA
Sbjct: 292 RFGATHEIGIFEMVDHGLVEVENPSELFLGNR---DEFSPGTATVVACEGTRPIVVELQA 348
Query: 438 LCVSGSTVS--RHVNGIQASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLA 495
L S S R GI+ +R I++VL K+ G+ L + ++ G+ + E A DL
Sbjct: 349 LVSPTSYASPRRSTTGIEYNRLQQILAVLEKRVGIPLSKLDAYVASAGGLGVEEPAADLG 408
Query: 496 VAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPK 550
VA A+ +SF + + IGE+GLGG++R+VS+ME R+ AKLG+++ IVP+
Sbjct: 409 VAIAVVASFRDRVVDPRTVLIGEVGLGGQVRLVSQMELRLKEAAKLGFKRAIVPR 463
>gi|434387699|ref|YP_007098310.1| DNA repair protein RadA [Chamaesiphon minutus PCC 6605]
gi|428018689|gb|AFY94783.1| DNA repair protein RadA [Chamaesiphon minutus PCC 6605]
Length = 498
Score = 335 bits (860), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 198/485 (40%), Positives = 292/485 (60%), Gaps = 48/485 (9%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQP 169
K RT++VC++CG T QW+G C C + G++ + G V+ E+ P
Sbjct: 3 KQPRTSYVCNECGSTSPQWYGKCPICNTYGSLIEQPPPSASRGVGVKAPNARSSDEQPHP 62
Query: 170 VRLL---EVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQ 226
+ L E+ G ++ W SG FG E+ RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ
Sbjct: 63 LAALTFPEIIDGEEE-RW---ASG-FG-ELDRVLGGGIVPGSLVLIGGDPGIGKSTLLLQ 116
Query: 227 MAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMI-------ATEE----------- 268
A +++ + V+YV GEES +Q+ RA R+ + +EE
Sbjct: 117 TANLMSKHYR------VLYVCGEESGKQVKLRASRLGVEGTKGELTSEEIEANGAAETPK 170
Query: 269 ---------LFLYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECT 319
L++ + TD+E+I+ +++ L P +IDSIQTVY + +AG + QV+ECT
Sbjct: 171 QLTVADGANLYVQAETDLEEILRELESLRPHVAVIDSIQTVYFPALTSAAGSVAQVRECT 230
Query: 320 SALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRF 379
+AL++ AK+ +I +L+ GHVTK G IAGP+VLEH+VD VLY EG++F+S+RLLRS KNRF
Sbjct: 231 AALMKVAKREDITLLIVGHVTKEGAIAGPKVLEHLVDTVLYFEGDRFASHRLLRSTKNRF 290
Query: 380 GSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC 439
G+T E+GVFEM GL+ V NPS++F+ ++ G A+ V +G+R ++E+QAL
Sbjct: 291 GATHEVGVFEMVDRGLREVDNPSELFVGDRQG---MAPGTAIVVACEGTRPIVVELQALV 347
Query: 440 VSGSTVS--RHVNGIQASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVA 497
S S R GI +R I++VL K+ G+ L + ++ G+ ++E A DL +A
Sbjct: 348 SPTSYPSPRRAGTGIDYNRLTQILAVLEKRVGIPLSKLDAYVASAGGLNVSEPAVDLGMA 407
Query: 498 AAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLA 557
AI +SF + + IGEIGLGG++R VS++E R+ AKLG+++ IVPK ++
Sbjct: 408 IAIVASFRDRVVAPFTILIGEIGLGGQVRQVSQLELRLKEAAKLGFKRAIVPK-GHQTFP 466
Query: 558 TLGFE 562
LG E
Sbjct: 467 DLGME 471
>gi|373460295|ref|ZP_09552048.1| DNA repair protein RadA [Prevotella maculosa OT 289]
gi|371955942|gb|EHO73738.1| DNA repair protein RadA [Prevotella maculosa OT 289]
Length = 460
Score = 335 bits (860), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 183/461 (39%), Positives = 282/461 (61%), Gaps = 29/461 (6%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEV---- 167
++ +VC++CG +W G C +C T K +D G + +T +
Sbjct: 4 DKIAYVCNNCGQESTKWIGKCPSCGQWNTFKEIRIA-NDTGSMAAKTAAHAVRNSLSNKN 62
Query: 168 QPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQM 227
+P+ L E++ + P + +E+ RVLGGGLVPGS+VL+GG+PG+GKSTL LQ
Sbjct: 63 KPLFLREISAKDE------PRIDMHDDELNRVLGGGLVPGSIVLLGGEPGIGKSTLTLQT 116
Query: 228 AAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPL 287
+ + ++YVSGEES +QI RA+R+ E+ + T +E+I + ++ +
Sbjct: 117 ILHMTE-------HRILYVSGEESAQQIKMRAERIG-GNSEVMVLCETSLENIFDHIKEV 168
Query: 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAG 347
P +IIDSIQT+ V S G + QV+EC +ALLRFAK + IPV+L GH+ K G +AG
Sbjct: 169 KPELVIIDSIQTISTSDVESSPGSITQVRECAAALLRFAKTSAIPVILIGHINKEGTLAG 228
Query: 348 PRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLS 407
P++LEHIVD V+ EG++ YR+LRS+KNRFGST ELG++EM Q GL+ VSNPS++ L+
Sbjct: 229 PKILEHIVDTVIQFEGDQHYMYRILRSIKNRFGSTSELGIYEMQQNGLRQVSNPSELLLT 288
Query: 408 EQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLM 465
+ D E L+G+A++ ++G R FL+E QAL S + T R G R +M+++VL
Sbjct: 289 Q---DYEGLSGIAISSAIEGVRPFLVETQALVSSAAYGTPQRSATGFDQRRLNMLLAVLE 345
Query: 466 KQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGEL 525
K+ G KL + +F+N+ G+ +T+ A DL+V AA+ SS ++ I G GE+GL GE+
Sbjct: 346 KRVGFKLMQKDVFINIAGGLRVTDLAMDLSVIAAVLSSNVDTAIEAGWCMAGEVGLSGEV 405
Query: 526 RMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEF 566
R V+R+++R++ KLG+ I+P K GF++ ++
Sbjct: 406 RPVNRIDQRIAEAEKLGFAHMIIPAHNLK-----GFDKRKY 441
>gi|425435456|ref|ZP_18815907.1| DNA repair protein radA homolog [Microcystis aeruginosa PCC 9432]
gi|443651755|ref|ZP_21130688.1| DNA repair protein RadA [Microcystis aeruginosa DIANCHI905]
gi|389679980|emb|CCH91268.1| DNA repair protein radA homolog [Microcystis aeruginosa PCC 9432]
gi|443334396|gb|ELS48908.1| DNA repair protein RadA [Microcystis aeruginosa DIANCHI905]
Length = 508
Score = 335 bits (860), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 194/475 (40%), Positives = 281/475 (59%), Gaps = 51/475 (10%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKP------E 165
+RT ++CS CG QW G C +C++ GT++ + + W +P
Sbjct: 4 SRTIYICSACGAESPQWLGKCPSCDTYGTLEEQVMAGGNNPAGNRPGWQNSRPNNGKGQR 63
Query: 166 EVQP---VRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKST 222
QP VR E+ + ++ R P SG E RVLGGG+VPGSLVLIGGDPG+GKST
Sbjct: 64 NPQPRISVRFSEITQYEQE---RFP-SGY--GEFDRVLGGGIVPGSLVLIGGDPGIGKST 117
Query: 223 LLLQMAAIIADVHDLGEPSP-VVYVSGEESVEQIGNRADRMMIAT--------------- 266
LLLQ+ + L + P ++YVS EES +QI RA R+ +
Sbjct: 118 LLLQVT------NQLAQRLPRILYVSAEESGQQIKLRAARLGVGVVPVESENNGNGKEKK 171
Query: 267 ---------EELFLYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKE 317
L++ TD+E+I+ +++ L P+ +IDSIQT+Y + + G + QV+E
Sbjct: 172 ASESTAELDNHLYVLPETDLEEILRELESLRPQVAVIDSIQTLYFGALTSAPGSVAQVRE 231
Query: 318 CTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKN 377
CTSAL++ AK+ NI +L+ GHVTK G IAGPRVLEH+VD VLY EG++++S+RLLRSVKN
Sbjct: 232 CTSALMQVAKRENITLLIVGHVTKEGAIAGPRVLEHLVDTVLYFEGDRYASHRLLRSVKN 291
Query: 378 RFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQA 437
RFG+T E+G+FEM GL V NPS++FL + EF G A V +G+R ++E+QA
Sbjct: 292 RFGATHEIGIFEMVDHGLVEVENPSELFLGNR---DEFSPGTATVVACEGTRPIVVELQA 348
Query: 438 LCVSGSTVS--RHVNGIQASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLA 495
L S S R GI+ +R I++VL K+ G+ L + ++ G+ + E A DL
Sbjct: 349 LVSPTSYASPRRSTTGIEYNRLQQILAVLEKRVGIPLSKLDAYVASAGGLGVEEPAADLG 408
Query: 496 VAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPK 550
VA A+ +SF + + IGE+GLGG++R+VS+ME R+ AKLG+++ IVP+
Sbjct: 409 VAIAVVASFRDRVVDPRTVLIGEVGLGGQVRLVSQMELRLKEAAKLGFKRAIVPR 463
>gi|294791952|ref|ZP_06757100.1| DNA repair protein RadA [Veillonella sp. 6_1_27]
gi|294457182|gb|EFG25544.1| DNA repair protein RadA [Veillonella sp. 6_1_27]
Length = 457
Score = 335 bits (860), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 185/471 (39%), Positives = 289/471 (61%), Gaps = 20/471 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
++ + C +CG +W G C C T+ E+ R Q +P L
Sbjct: 5 KSVFFCQNCGAESSKWMGRCPQCGEWNTLVEEIIKETKHSRTPSRGVGNQT---TKPTAL 61
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
++ ++ +S FG E+ RVLGGG+VPG+L+L+GGDPG+GKSTLLLQ++ +A
Sbjct: 62 PDI-----EISSIAHVSTTFG-EIDRVLGGGIVPGALMLLGGDPGIGKSTLLLQVSQKVA 115
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
D V+Y SGEES Q+ RA+R+ I +E L + + TD++ I+E+ + ++P L
Sbjct: 116 DT-----VGAVLYASGEESQLQLKLRAERLHINSERLQVIADTDLDHILEQAEAMTPSLL 170
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
+IDSIQT+Y + + G + QV+ECTS LLRF K+ NIP ++ GHVTK G+IAGPR+LE
Sbjct: 171 VIDSIQTMYTGDIDAAPGSVSQVRECTSRLLRFCKERNIPTVIIGHVTKEGNIAGPRMLE 230
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EGE+ +R+LRS+KNRFGST E G+F M + GLQ +SNPS L+E+ SD
Sbjct: 231 HMVDVVLYFEGERSYQFRILRSIKNRFGSTSETGIFAMVEEGLQELSNPSASLLAER-SD 289
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMKQAGL 470
E +G AV + ++G R L+E+Q+L V+ + R G +R ++++VL K+ G
Sbjct: 290 EE--SGSAVMIYLEGVRPILVEVQSLVVTTAFGMPRRTAIGYDLNRLIVLLAVLEKRCGF 347
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
L +++NV+ G+ + E A DL++A AI S+ +P + +GE+GL G +R + R
Sbjct: 348 TLGNKDVYVNVIGGLKVNEPACDLSMAVAIVSNLKNRIVPTDMVILGEVGLTGNVRSIPR 407
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVFT 581
+E+R++ KLG++K I+P+ K + ++ G K+++E + +VF+
Sbjct: 408 IEQRINEAKKLGFKKFIIPEGNYKQIKD-NDSSIKIKGVKSIQEAMQLVFS 457
>gi|319901030|ref|YP_004160758.1| DNA replication and repair protein RadA [Bacteroides helcogenes P
36-108]
gi|319416061|gb|ADV43172.1| DNA replication and repair protein RadA [Bacteroides helcogenes P
36-108]
Length = 455
Score = 335 bits (860), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 189/470 (40%), Positives = 280/470 (59%), Gaps = 22/470 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T +VCS+CG +W G C +C G Y + V +R + + +PV L
Sbjct: 5 KTVYVCSNCGQESPKWVGKCPSC---GEWNTYVEEVIRKETVNKRPVSGIETTKARPVTL 61
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
E+ G + P L E+ RVLGGGLV GSLVLIGG+PG+GKSTL+LQ +
Sbjct: 62 NEIAAGDE------PRIDLHDTELNRVLGGGLVQGSLVLIGGEPGIGKSTLVLQTVLQMP 115
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+ ++Y+SGEES Q+ RADR+ + + T +E I ++ P +
Sbjct: 116 EKR-------ILYISGEESARQLKLRADRLTNTPGDCLIVCETSLEQIYVHIKNTRPDLV 168
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQT+ + S G + Q++EC++++LRFAK+T+ V+L GH+ K G IAGP+VLE
Sbjct: 169 IIDSIQTISTETLESSPGSIAQIRECSASILRFAKETHTAVILIGHINKEGSIAGPKVLE 228
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
HIVD VL EG++ YR+LRS+KNRFGST ELG++EM Q GL+ V+NPS++ LS+ H
Sbjct: 229 HIVDTVLQFEGDQHYMYRILRSIKNRFGSTAELGIYEMRQDGLRQVNNPSELLLSQDH-- 286
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
E ++G+A+A ++G R FLIE QAL S R G R +M+++VL K+ G
Sbjct: 287 -EGMSGIAIASAIEGVRPFLIETQALVSSAVYGNPQRSATGFDIRRMNMLLAVLEKRVGF 345
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
KL + +FLN+ G+ + + A DLAV +AI SS ++ I + GEIGL GE+R V+R
Sbjct: 346 KLAQKDVFLNIAGGLKVNDPAIDLAVISAILSSNMDTAIEPEVCMAGEIGLSGEIRPVNR 405
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+E+R+ KLG+++ I+PK + L ++E I + ++E +F
Sbjct: 406 IEQRIGEAEKLGFKRFILPKYNMQGL-NAKKTRIELIPVRKVEEAFRTLF 454
>gi|357236094|ref|ZP_09123437.1| putative DNA repair protein RadA-like protein [Streptococcus
criceti HS-6]
gi|356884076|gb|EHI74276.1| putative DNA repair protein RadA-like protein [Streptococcus
criceti HS-6]
Length = 408
Score = 335 bits (860), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 188/418 (44%), Positives = 263/418 (62%), Gaps = 19/418 (4%)
Query: 165 EEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLL 224
E+ +P +L K + +D+ + + E RVLGGG+VPGSLVLIGGDPG+GKSTLL
Sbjct: 6 EKTKPTKL----KDVSSIDYARTKTNM--EEFNRVLGGGVVPGSLVLIGGDPGIGKSTLL 59
Query: 225 LQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKV 284
LQ++ +A+ V+YVSGEES EQI R++R+ E ++Y+ T++++I ++
Sbjct: 60 LQVSTQLAN------KGTVLYVSGEESAEQIKLRSERLGDIDNEFYIYAETNMQNIRSEI 113
Query: 285 QPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGD 344
+ L P LIIDSIQTV + G + QV+E T+ L++ AK NI + GHVTK G
Sbjct: 114 ERLKPNFLIIDSIQTVMSPEITSVQGSVSQVREVTAELMQLAKSNNIATFIVGHVTKEGT 173
Query: 345 IAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKI 404
+AGPR+LEH+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS++
Sbjct: 174 LAGPRMLEHMVDTVLYFEGERHHTFRILRAVKNRFGSTNEIGIFEMQTGGLVEVLNPSQL 233
Query: 405 FLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIIS 462
FL E+ + G A+ V M+G+R L E+QAL R G+ +RA +I++
Sbjct: 234 FLEERLDGA---TGSAIVVTMEGTRPILAEVQALVTPTVFGNAKRTTTGLDFNRASLIMA 290
Query: 463 VLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLG 522
VL K+ GL LQ +L GV L E A DLAVA AI SS+ E P AFIGEIGL
Sbjct: 291 VLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEAPTNAQDAFIGEIGLT 350
Query: 523 GELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
GE+R V+R+E+R++ AKLG+ K PK+A + + +E IG + EV+ VF
Sbjct: 351 GEIRRVNRIEQRINEAAKLGFTKIYAPKNALHGIDIP--KNIEVIGVSTVGEVLKKVF 406
>gi|256419924|ref|YP_003120577.1| DNA repair protein RadA [Chitinophaga pinensis DSM 2588]
gi|256034832|gb|ACU58376.1| DNA repair protein RadA [Chitinophaga pinensis DSM 2588]
Length = 457
Score = 335 bits (860), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 178/472 (37%), Positives = 282/472 (59%), Gaps = 22/472 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T + C +CGY +W G C +C T + P+ W P+K + +
Sbjct: 4 KTAFFCQNCGYESAKWTGKCPSCGQWNTFVEEKV--QKDIPLRNAGWQPEKEHGAKSDNI 61
Query: 173 LEVNK--GMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAI 230
+ +++ G ++ P + E+ RVLGGG+VPGSLVL+GG+PG+GKSTL LQ A +
Sbjct: 62 VNLSEISGTEEERLLTPDA-----ELNRVLGGGIVPGSLVLVGGEPGIGKSTLFLQNALL 116
Query: 231 IADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPR 290
+ D+ L Y+SGEES +QI RADR+ + + +L + T + I ++++ L P+
Sbjct: 117 LKDITTL-------YISGEESAQQIKMRADRLQVKNDLFYLLTETSTQTIFQEIKKLRPQ 169
Query: 291 ALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRV 350
+I+DSIQT+ + + G + Q++E T+ L RFAK+++ PV L GH+TK G IAGP++
Sbjct: 170 LVIVDSIQTLQSPFIESAPGSVSQIRETTAELQRFAKESHTPVFLIGHITKDGSIAGPKI 229
Query: 351 LEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQH 410
LEH+VD VL EG++ +YR+LR++KNRFGST ELG++EM+ GL+ V+NPS+I +S++
Sbjct: 230 LEHMVDTVLQFEGDQHYAYRILRTIKNRFGSTAELGIYEMTGGGLRQVTNPSEILISQRE 289
Query: 411 SDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQA 468
L+G+A+A ++G R L+E+QAL T R G R ++++VL K+
Sbjct: 290 DQ---LSGVAIAATIEGMRPMLVEVQALVTQSVYGTPQRTATGFDLRRLQLLLAVLEKRG 346
Query: 469 GLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMV 528
G +FLN+ G+ + + + DLAV A+ SS+ + PI + I F GE+GL GE+R V
Sbjct: 347 GFHFGVKDVFLNIAGGIRVEDPSIDLAVLCALLSSYEDIPISSKICFAGEVGLSGEIRAV 406
Query: 529 SRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+R+E+RV+ KLG+ K + + +K F +E I + EV +F
Sbjct: 407 NRIEQRVAEAEKLGFEKIFISRYNKKGTDISKF-NIEVIPVGRVDEVYRGLF 457
>gi|153855897|ref|ZP_01996859.1| hypothetical protein DORLON_02884 [Dorea longicatena DSM 13814]
gi|149751800|gb|EDM61731.1| DNA repair protein RadA [Dorea longicatena DSM 13814]
Length = 455
Score = 335 bits (860), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 194/472 (41%), Positives = 284/472 (60%), Gaps = 21/472 (4%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQP 169
KA ++ + C +CG+ + +W G C C+ T G V R KP+ Q
Sbjct: 3 KAKKSIYFCQNCGHEESKWLGQCPMCKEWNTFVEEKVSTPVSG--VSRGSSVAKPKS-QV 59
Query: 170 VRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAA 229
V L V+ D +G+ E+ RVLGGG+V GSLVL+GGDPG+GKSTLLLQ+
Sbjct: 60 VTLSSVS----TTDEERTKTGI--KELDRVLGGGIVQGSLVLVGGDPGIGKSTLLLQVCQ 113
Query: 230 IIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSP 289
+AD + V+Y+SGEES++QI RA+RM + LFL T++ I ++ +P
Sbjct: 114 KLAD-----KQKKVLYISGEESLKQIKLRANRMGEFADSLFLLCETNLAAIQSVIEKETP 168
Query: 290 RALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPR 349
++IDSIQT+Y V+ + G + QV+E T+ L++ AK NI + GHVTK G +AGPR
Sbjct: 169 DVVVIDSIQTMYNEEVSSAPGSVSQVRESTNVLMQLAKGLNISTFIVGHVTKEGTVAGPR 228
Query: 350 VLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQ 409
VLEH+VD VLY EG++ +SYR+LR VKNRFGST+E+GVFEM + GL V NPS+ LS +
Sbjct: 229 VLEHMVDTVLYFEGDRHASYRILRGVKNRFGSTNEIGVFEMRREGLCEVENPSEFMLSGK 288
Query: 410 HSDSEFLAGLAVAVIMDGSRSFLIEIQAL-CVSGSTVSRHV-NGIQASRADMIISVLMKQ 467
++ +G VA M+G+R L+EIQAL C S + R G+ +R +++++VL K+
Sbjct: 289 PENA---SGSVVACAMEGTRPMLMEIQALICRSNFGMPRRTAAGLDYNRVNLLMAVLEKR 345
Query: 468 AGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRM 527
GL L ++N+ G+ + E A DL + AI SS+ PI GE+GL GE+R
Sbjct: 346 MGLPLSNYDAYVNIAGGIRMNEPAADLGIVMAIASSYKNKPIAEDTIVFGEVGLSGEVRA 405
Query: 528 VSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVV 579
V+ E+RV+ KLG++ CIVP A KS+ + + +E IG ++ + +N +
Sbjct: 406 VTMPEQRVAEAKKLGFKTCIVPAVALKSIGKV--DGIEVIGVNSVNQAMNYI 455
>gi|323339416|ref|ZP_08079699.1| DNA repair protein RadA [Lactobacillus ruminis ATCC 25644]
gi|417972444|ref|ZP_12613346.1| DNA repair protein RadA [Lactobacillus ruminis ATCC 25644]
gi|323093181|gb|EFZ35770.1| DNA repair protein RadA [Lactobacillus ruminis ATCC 25644]
gi|346331205|gb|EGX99422.1| DNA repair protein RadA [Lactobacillus ruminis ATCC 25644]
Length = 457
Score = 335 bits (860), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 190/473 (40%), Positives = 279/473 (58%), Gaps = 27/473 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTM--KRYSAGESDEGPVVQRTWLPQKPEEVQPV 170
+T +VC CGY ++ G C C T+ + + P V + KP+ + +
Sbjct: 5 KTRFVCQTCGYVSPRYLGRCPNCGEWNTLVEEIEESKNVQTAPRVTFSGTKVKPQLIDAI 64
Query: 171 RLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAI 230
E + + + E+ RVLGGG+VP S+VLIGGDPG+GKST+LLQ++
Sbjct: 65 STKETPRIVTK-----------NAELNRVLGGGIVPSSMVLIGGDPGIGKSTMLLQLSGE 113
Query: 231 IADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPR 290
+AD+ V+YVSGEES QI RADR+ + E +LY TD++ I++ V+ L P
Sbjct: 114 LADMG-----GKVLYVSGEESANQIKMRADRLGVGGSEFYLYPETDMQSILQNVEDLKPD 168
Query: 291 ALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRV 350
++IDS+QT+ + + G + Q++ T++L++ AK I V + GHVTK G IAGP++
Sbjct: 169 YVVIDSVQTMQDPELTSAVGSVAQIRSVTASLMQVAKVNGITVFIVGHVTKGGAIAGPKI 228
Query: 351 LEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQH 410
LEH+VD VLY EG+ +YR+LR+VKNRFGST+E+GVFEM + GL V NPS+IFL E+
Sbjct: 229 LEHMVDTVLYFEGDMHRTYRILRAVKNRFGSTNEIGVFEMREDGLNEVKNPSEIFLEERL 288
Query: 411 SDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMKQA 468
+ G +V V M+G+R L E+QAL + R NG+ +R +I++VL K++
Sbjct: 289 QGA---TGSSVVVSMEGTRPILAEVQALVTPTAFGNAKRTTNGLDHNRVSLIMAVLEKRS 345
Query: 469 GLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMV 528
GL LQ +L GV L E A DLAVA +I SS+ + FIGE+GL GE+R V
Sbjct: 346 GLLLQNQDAYLKAAGGVKLDEPAIDLAVAVSIVSSYRDEETLATDCFIGELGLTGEVRRV 405
Query: 529 SRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGF-EQMEFIGCKNLKEVINVVF 580
R++ RV AKLG+++ VPK+ +L F ++ +G + L E + VF
Sbjct: 406 GRIDARVKEAAKLGFKRAFVPKN---NLDGWEFPSNIQVVGVQTLNETLRQVF 455
>gi|171779002|ref|ZP_02920010.1| hypothetical protein STRINF_00885 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|379706134|ref|YP_005204593.1| DNA repair protein RadA [Streptococcus infantarius subsp.
infantarius CJ18]
gi|171282360|gb|EDT47785.1| DNA repair protein RadA [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|374682833|gb|AEZ63122.1| DNA repair protein RadA [Streptococcus infantarius subsp.
infantarius CJ18]
Length = 415
Score = 335 bits (860), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 184/390 (47%), Positives = 253/390 (64%), Gaps = 15/390 (3%)
Query: 194 NEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVE 253
+E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ +AD V+YVSGEES E
Sbjct: 37 DEFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSIQLAD------KGTVLYVSGEESAE 90
Query: 254 QIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLM 313
QI R++R+ E +LY+ T+++ I +++ + P LIIDSIQT+ ++G G +
Sbjct: 91 QIKLRSERLGDIDNEFYLYAETNMQAIRTQIEQIQPDFLIIDSIQTIMSPDISGVQGSVS 150
Query: 314 QVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLR 373
QV+E T+ L++ AK NI + GHVTK G +AGPR+LEH+VD VLY EGE+ ++R+LR
Sbjct: 151 QVREVTAELMQLAKTNNIATFIVGHVTKEGQLAGPRMLEHMVDTVLYFEGERHHTFRILR 210
Query: 374 SVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLI 433
+VKNRFGST+E+G+FEM GL V NPS++FL E+ + G A+ V M+GSR L
Sbjct: 211 AVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGA---TGSAIVVTMEGSRPILA 267
Query: 434 EIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETA 491
E+QAL R G+ +R +I++VL K+ GL LQ +L GV L E A
Sbjct: 268 EVQALVTPTVFGNAKRTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPA 327
Query: 492 GDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKS 551
DLAVA AI SS+ E P AFIGEIGL GE+R V+R+E+R++ AKLG+ K PK+
Sbjct: 328 IDLAVAVAIASSYKEKPTNPQEAFIGEIGLTGEIRRVTRIEQRINEAAKLGFTKVYAPKN 387
Query: 552 AEKSLATLGF-EQMEFIGCKNLKEVINVVF 580
SL+ + + ++ IG + EV+ VF
Sbjct: 388 ---SLSGIDIPDNIQVIGVTTVGEVLKKVF 414
>gi|333375060|ref|ZP_08466885.1| DNA repair protein RadA [Kingella kingae ATCC 23330]
gi|332971854|gb|EGK10800.1| DNA repair protein RadA [Kingella kingae ATCC 23330]
Length = 458
Score = 335 bits (859), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 192/477 (40%), Positives = 284/477 (59%), Gaps = 34/477 (7%)
Query: 109 GKANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQ--KPEE 166
KA + + C++CG T +W G C C T+ + Q +W + + +E
Sbjct: 2 AKAPKIQFQCTECGGTTPKWVGKCPHCGEWNTLSEQLTAPEPKNARFQ-SWAAETTQVQE 60
Query: 167 VQPVRLLEVNK---GMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTL 223
+ V +EV + GM +LD RVLGGGLV G+++L+GGDPG+GKSTL
Sbjct: 61 LSKVTAMEVPREATGMGELD--------------RVLGGGLVDGAVILLGGDPGIGKSTL 106
Query: 224 LLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEK 283
LLQ A+IA + V+YVSGEES +Q+ R+ R+ + + + L + +E I
Sbjct: 107 LLQTIALIA------KKRKVLYVSGEESAQQVALRSQRLGLNADGVNLLAEIRLEAIQAA 160
Query: 284 VQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSG 343
++ P ++IDSIQT+Y + + G + QV+EC + L R AK+ I ++ GHVTK G
Sbjct: 161 LKQHEPSVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRIAKQMGIAMIFVGHVTKDG 220
Query: 344 DIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSK 403
IAGPRVLEH+VD VLY EG++ S+YR++R++KNRFG+ +ELGVF M++ GL+ VSNPS
Sbjct: 221 AIAGPRVLEHMVDTVLYFEGDQHSNYRMIRAIKNRFGAANELGVFAMTETGLKGVSNPSA 280
Query: 404 IFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMII 461
IFL+ D +AG V V +GSR L+EIQAL G T R G++ +R M++
Sbjct: 281 IFLASYRDD---VAGSCVLVTQEGSRPLLVEIQALVDDAHGFTPKRLTVGLEQNRLAMLL 337
Query: 462 SVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGL 521
+VL + AG+ + +FLN V GV ++E A DLAV A+ SS+ P+P + GEIGL
Sbjct: 338 AVLNRHAGIACFDQDVFLNAVGGVKISEPAADLAVILAMLSSYRNKPLPEKMVAFGEIGL 397
Query: 522 GGELRMVSRMEKRVSTVAKLGYRKCIVPKSA-EKSLATLGFEQMEFIGCKNLKEVIN 577
GE+R V R ++R+ KLG+++ IVPK+ K+L F ++ G +L+E +N
Sbjct: 398 SGEIRPVPRGQERLKEAEKLGFKRAIVPKANLPKNLKE--FPSLKIQGVSSLQEAVN 452
>gi|58336684|ref|YP_193269.1| DNA repair protein RadA [Lactobacillus acidophilus NCFM]
gi|227903245|ref|ZP_04021050.1| DNA repair protein RadA [Lactobacillus acidophilus ATCC 4796]
gi|58254001|gb|AAV42238.1| DNA repair protein [Lactobacillus acidophilus NCFM]
gi|227869050|gb|EEJ76471.1| DNA repair protein RadA [Lactobacillus acidophilus ATCC 4796]
Length = 458
Score = 335 bits (859), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 182/440 (41%), Positives = 263/440 (59%), Gaps = 17/440 (3%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T + C CGY + G C C + ++ + + L QK +PV+L
Sbjct: 5 KTQYKCRSCGYISASYLGRCPNCGAWNQFEKETEEVQKRSTKATASRLIQKTGVNEPVKL 64
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
+K + + RI E+ RVLGGG+VPGSLVLIGGDPG+GKSTL+LQ+ +
Sbjct: 65 ---DKIKAEKEERISTKS---EELNRVLGGGIVPGSLVLIGGDPGIGKSTLMLQIMS--- 115
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
DL E V+YVSGEES QI RADR+ I + LY +D+ DI E++ + P +
Sbjct: 116 ---DLAEKHKVLYVSGEESANQIKLRADRLGIGQSNMLLYPESDMHDIREQINDVKPDFV 172
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
+IDSIQT+ + G QV+E TS L++ AK I V + GHVTK G IAGP+++E
Sbjct: 173 VIDSIQTMNEPSLDSMTGSASQVREVTSELMKIAKMDAITVFVIGHVTKEGAIAGPKIME 232
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EG++ +YR+L SVKNRFG+ +E+G+FEM GL+ V+NPS IFL ++ +
Sbjct: 233 HMVDTVLYFEGDEHHTYRILHSVKNRFGAANEIGMFEMVNEGLKEVTNPSAIFLDQRLPN 292
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMKQAGL 470
S G AV V ++G+R L EIQAL + R +GI +RA ++++VL K+ L
Sbjct: 293 S---TGSAVVVSLEGTRPLLAEIQALVTPTAFGYAKRTTSGIDYNRAALLLAVLEKRGNL 349
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ ++L G+ L E A DLA+A ++ SS+ + I F+GE+GL GE+R V +
Sbjct: 350 MLQNQDVYLTATGGIKLNEPAIDLAIAMSVASSYTDKEISPTDCFVGEVGLTGEIRRVDK 409
Query: 531 MEKRVSTVAKLGYRKCIVPK 550
+E RV AK+G+++ +PK
Sbjct: 410 IEARVKEAAKVGFKRIFIPK 429
>gi|306834441|ref|ZP_07467555.1| DNA repair protein RadA [Streptococcus bovis ATCC 700338]
gi|304423427|gb|EFM26579.1| DNA repair protein RadA [Streptococcus bovis ATCC 700338]
Length = 433
Score = 335 bits (859), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 194/455 (42%), Positives = 272/455 (59%), Gaps = 26/455 (5%)
Query: 129 WGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRLLEVNKGMKQLDWRIPL 188
G C C S + + + V T KP +++ V + ++ +D
Sbjct: 1 MGRCPNCSSWTSFVEEVEVQEVKNARVSLTGEKSKPTKLKDVSSIHYSRTKTGMD----- 55
Query: 189 SGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSG 248
E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ +AD V+YVSG
Sbjct: 56 ------EFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSIQLAD------KGTVLYVSG 103
Query: 249 EESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGS 308
EES EQI R++R+ E +LY+ T+++ I +++ + P LIIDSIQT+ ++G
Sbjct: 104 EESAEQIKLRSERLGDIDNEFYLYAETNMQAIRAQIEQIQPDFLIIDSIQTIMSPDISGV 163
Query: 309 AGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSS 368
G + QV+E T+ L++ AK NI + GHVTK G +AGPR+LEH+VD VLY EGE+ +
Sbjct: 164 QGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGQLAGPRMLEHMVDTVLYFEGERHHT 223
Query: 369 YRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGS 428
+R+LR+VKNRFGST+E+G+FEM GL V NPS++FL E+ + G A+ V M+GS
Sbjct: 224 FRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGA---TGSAIVVTMEGS 280
Query: 429 RSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGLKLQENAIFLNVVSGVA 486
R L E+QAL R G+ +R +I++VL K+ GL LQ +L GV
Sbjct: 281 RPILAEVQALVTPTVFGNAKRTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVK 340
Query: 487 LTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKC 546
L E A DLAVA AI SS+ E P AFIGEIGL GE+R V+R+E+R++ AKLG+ K
Sbjct: 341 LDEPAIDLAVAVAIASSYKEKPTNPQEAFIGEIGLTGEIRRVTRIEQRINEAAKLGFTKV 400
Query: 547 IVPKSAEKSLATLGF-EQMEFIGCKNLKEVINVVF 580
PK+ SL+ + + ++ IG + EV+ VF
Sbjct: 401 YAPKN---SLSGIDIPDNIQVIGVTTVGEVLKKVF 432
>gi|378824300|ref|ZP_09846813.1| DNA repair protein RadA [Sutterella parvirubra YIT 11816]
gi|378596871|gb|EHY30246.1| DNA repair protein RadA [Sutterella parvirubra YIT 11816]
Length = 468
Score = 335 bits (859), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 191/457 (41%), Positives = 263/457 (57%), Gaps = 36/457 (7%)
Query: 108 KGKANRTNWVCSDCGYTDGQWWGMCRACESVGTMK----------RYSAGESDEGPVVQR 157
K K RT +VCSDCG T +W G C C++ T++ RY + G V
Sbjct: 4 KTKKVRTEFVCSDCGGTTAKWAGQCPHCKAWNTLQEFTVKEGVAARYGSVNERRGGFVDT 63
Query: 158 TWLPQKPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPG 217
T Q EV + G+ + D RV+GGGLV G + LIGGDPG
Sbjct: 64 TGSLQDLSEVSTAEAPRIQTGLSEFD--------------RVMGGGLVQGGVALIGGDPG 109
Query: 218 VGKSTLLLQ-MAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTD 276
+GKSTLLLQ MA ++A VYVSGEES QI RA R+ I L L S +
Sbjct: 110 IGKSTLLLQVMARLVA------AGIRAVYVSGEESATQIALRAQRLQIDPHGLQLMSEIE 163
Query: 277 IEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLA 336
+E I ++ P +++DSIQT++ + + G + QV+EC + L R AK P++
Sbjct: 164 LEHIEAVLKDKKPEFVVVDSIQTLFSGQLESAPGSVSQVRECAARLTRLAKTLGTPLIFV 223
Query: 337 GHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQ 396
GHVTK G +AGPR+LEHIVD VLY EG+ S++RL+R+ KNRFG+ +ELGVF M+ GL+
Sbjct: 224 GHVTKDGALAGPRILEHIVDTVLYFEGDTHSNFRLVRAFKNRFGAVNELGVFAMTDHGLR 283
Query: 397 AVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQA 454
V+NPS IFLSE ++ + G V V +G+R L+EIQAL T R G+ A
Sbjct: 284 GVTNPSAIFLSEYKAN---VPGATVLVTQEGTRPLLVEIQALVDQTHLPTPRRLSVGVDA 340
Query: 455 SRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIA 514
R M+++VL + AG+ + +F+N V GV +TETA DLAV AAI SS P+P G+
Sbjct: 341 QRLSMLLAVLHRHAGVGCFDQDVFINAVGGVKITETAADLAVLAAIVSSIRNKPLPEGLV 400
Query: 515 FIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKS 551
GE+GL GE+R R ++R+ AKLG+ + I+P++
Sbjct: 401 VFGEVGLAGEIRPAPRGQERLREAAKLGFSRAIIPRA 437
>gi|336065104|ref|YP_004559963.1| DNA repair protein RadA/Sms [Streptococcus pasteurianus ATCC 43144]
gi|334283304|dbj|BAK30877.1| DNA repair protein RadA/Sms [Streptococcus pasteurianus ATCC 43144]
Length = 415
Score = 335 bits (859), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 189/419 (45%), Positives = 266/419 (63%), Gaps = 21/419 (5%)
Query: 165 EEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLL 224
E+ +P +L K + + + +G+ +E RVLGGG+VPGSLVLIGGDPG+GKSTLL
Sbjct: 14 EKSKPTKL----KDVSSIHYSRTKTGM--DEFNRVLGGGVVPGSLVLIGGDPGIGKSTLL 67
Query: 225 LQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKV 284
LQ++ +AD V+YVSGEES EQI R++R+ E +LY+ T+++ I ++
Sbjct: 68 LQVSIQLAD------KGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQAIRAQI 121
Query: 285 QPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGD 344
+ + P LIIDSIQT+ ++G G + QV+E T+ L++ AK NI + GHVTK G
Sbjct: 122 EQIQPDFLIIDSIQTIMSPDISGVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGQ 181
Query: 345 IAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKI 404
+AGPR+LEH+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS++
Sbjct: 182 LAGPRMLEHMVDTVLYFEGERHHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQV 241
Query: 405 FLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIIS 462
FL E+ + G A+ V M+GSR L E+QAL R G+ +R +I++
Sbjct: 242 FLEERLDGA---TGSAIVVTMEGSRPILAEVQALVTPTVFGNAKRTTTGLDFNRVSLIMA 298
Query: 463 VLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLG 522
VL K+ GL LQ +L GV L E A DLAVA AI SS+ E P AFIGEIGL
Sbjct: 299 VLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTNPQEAFIGEIGLT 358
Query: 523 GELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGF-EQMEFIGCKNLKEVINVVF 580
GE+R V+R+E+R++ AKLG+ K PK+ SL+ + + ++ IG + EV+ VF
Sbjct: 359 GEIRRVTRIEQRINEAAKLGFTKVYAPKN---SLSGIDIPDNIQVIGVTTVGEVLKKVF 414
>gi|418323143|ref|ZP_12934432.1| DNA repair protein RadA [Staphylococcus pettenkoferi VCU012]
gi|365230236|gb|EHM71346.1| DNA repair protein RadA [Staphylococcus pettenkoferi VCU012]
Length = 456
Score = 335 bits (859), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 194/465 (41%), Positives = 284/465 (61%), Gaps = 29/465 (6%)
Query: 118 CSDCGYTDGQWWGMCRACESVGTMKRY-SAGESDEGPVVQRTWLPQKPEEVQPVRLLEVN 176
C CGY +W G C +C + M+ ES V+R + +VQ +L EV+
Sbjct: 10 CMACGYQSAKWMGKCPSCGAWNQMEEVVERKESSPKHGVRRR---ESHSKVQ--KLNEVH 64
Query: 177 KGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHD 236
+ P E RVLGGG+V GSLVLIGGDPG+GKSTLLLQ+ A
Sbjct: 65 HETR------PRIKSKSEEFNRVLGGGIVTGSLVLIGGDPGIGKSTLLLQICAA------ 112
Query: 237 LGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIIDS 296
L + V+Y++GEES+ Q RADR+ + L +++ TD+E I + V L P L++DS
Sbjct: 113 LSQSYSVLYITGEESLNQTKIRADRLDEDSSNLNVFAETDLEIIHDTVVKLKPDLLVVDS 172
Query: 297 IQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVD 356
IQTV+ ++ + G + QV+E T +L+ AK+ NI + GHVTK G IAGPR+LEH+VD
Sbjct: 173 IQTVFHPDISSAPGSVSQVRESTQSLMNIAKQNNIATFIVGHVTKEGQIAGPRLLEHMVD 232
Query: 357 AVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFL 416
VLY EG++ +YR+LR+VKNRFGST+E+G+FEM Q GL+ V NPS++FL E+ ++ +
Sbjct: 233 TVLYFEGDEHHAYRILRAVKNRFGSTNEMGIFEMKQSGLKGVKNPSEMFLEERSTN---V 289
Query: 417 AGLAVAVIMDGSRSFLIEIQALCVSGSTVS---RHVNGIQASRADMIISVLMKQAGLKLQ 473
G + M+G+R LIE+QAL V+ +T + R GI +R ++++VL K+ LQ
Sbjct: 290 PGSTIVSTMEGTRPLLIEVQAL-VTPTTFNNPRRMATGIDHNRLSLLMAVLEKKENYLLQ 348
Query: 474 ENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEK 533
+ ++ V GV LTE A DL V + SSF + + F+GE+GL GE+R VSR+E+
Sbjct: 349 QQDAYIKVAGGVRLTEPAVDLGVIISTASSFKDQAVDGLDCFVGEVGLTGEVRRVSRIEQ 408
Query: 534 RVSTVAKLGYRKCIVPKSAEKSLATLGF-EQMEFIGCKNLKEVIN 577
RV AKLG+++ I+P+S ++ F E ++ IG KN+ E ++
Sbjct: 409 RVQEAAKLGFKRIIIPES---NIGGWTFPESIQVIGVKNVHEALS 450
>gi|256839329|ref|ZP_05544838.1| DNA repair protein RadA [Parabacteroides sp. D13]
gi|256738259|gb|EEU51584.1| DNA repair protein RadA [Parabacteroides sp. D13]
Length = 456
Score = 335 bits (859), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 197/472 (41%), Positives = 289/472 (61%), Gaps = 25/472 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLP--QKPEEVQPV 170
+T +VCS+CG +W G C C G Y + P V+R +P + +++PV
Sbjct: 5 KTVYVCSNCGADSPKWLGKCPNC---GEWNTYVEEIVTKEPAVKRP-VPGIMEGNKIRPV 60
Query: 171 RLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAI 230
L ++ + + RI L +E+ RVLGGGLV GSLVLIGG+PG+GKSTL+LQ
Sbjct: 61 LLRDITT---EEEARIDLKD---DELNRVLGGGLVKGSLVLIGGEPGIGKSTLVLQTVLG 114
Query: 231 IADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPR 290
+ + L YVSGEES Q+ RADR+ F+ T +E I + + P
Sbjct: 115 LTGLKTL-------YVSGEESSRQLKLRADRLSHDNPNCFILCETHLEQIFTQAANIQPD 167
Query: 291 ALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRV 350
+IIDSIQT++ + V S G + QV+EC++A+L++AK++ +PVLL GH+ K G IAGP+V
Sbjct: 168 LMIIDSIQTIFTKVVESSPGSVSQVRECSAAILKYAKESGVPVLLIGHINKEGSIAGPKV 227
Query: 351 LEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQH 410
LEHIVD VL EG++ YR+LRS+KNRFGST ELG++EM Q GL+ VSNPS++ L++ H
Sbjct: 228 LEHIVDTVLQFEGDQHYMYRILRSIKNRFGSTAELGIYEMRQNGLREVSNPSELLLTQNH 287
Query: 411 SDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQA 468
E L+G+A+A ++G R FLIE QAL S T R G R +M+++VL K+A
Sbjct: 288 ---EGLSGVAIAAAIEGVRPFLIETQALVSSAVYGTPQRSATGFDLRRMNMLLAVLEKRA 344
Query: 469 GLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMV 528
G KL + +FLN+ G+ + + A DLAV ++I SS L+ I G+ GE+GL GE+R V
Sbjct: 345 GFKLIQKDVFLNIAGGLKVNDPAIDLAVISSILSSSLDISIEPGVCMAGEVGLSGEIRPV 404
Query: 529 SRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+R+E+R+ KLG+ + I+P + K T +++ + K ++E +F
Sbjct: 405 NRIEQRILEAEKLGFSRIIIPHNNLKGFDT-AKSKIQIVQVKKVEEAFRQLF 455
>gi|402847583|ref|ZP_10895863.1| DNA repair protein RadA [Porphyromonas sp. oral taxon 279 str.
F0450]
gi|402265975|gb|EJU15427.1| DNA repair protein RadA [Porphyromonas sp. oral taxon 279 str.
F0450]
Length = 458
Score = 335 bits (859), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 188/473 (39%), Positives = 282/473 (59%), Gaps = 25/473 (5%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACE--SVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQP 169
+T + C++CG +W G C C + + G+ D+ RT+ Q +P
Sbjct: 4 KKTVYHCTECGAEYPKWQGFCSQCGVWNSIEEEEIIIGKQDKA---SRTFTAQSITASKP 60
Query: 170 VRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAA 229
VRL ++ + + + R+ L E+ RVLGGGLV GS +L+GG+PG+GKSTL+LQ
Sbjct: 61 VRLGDIEQ---RSESRLSLGD---PELDRVLGGGLVEGSFILLGGEPGIGKSTLVLQTI- 113
Query: 230 IIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSP 289
L P +YVSGEES+ Q+ RADR+ ++ +Y+ T++E I+ P
Sbjct: 114 -------LRLPYKTLYVSGEESLSQLKMRADRIGGTNDDCLIYAETNLEKILATAIDTQP 166
Query: 290 RALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPR 349
+ L+IDSIQT+ S G + Q++EC +ALL++ K + V+L GH+ K G IAGP+
Sbjct: 167 QILVIDSIQTIQTELSDSSPGSVSQIRECATALLKYCKTEGVAVILIGHINKEGSIAGPK 226
Query: 350 VLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQ 409
+LEH VD VL +G+K YR+LR KNRFGST ELG++EM Q GL+ V NPS+ +++
Sbjct: 227 ILEHTVDVVLQFDGDKHYMYRILRGQKNRFGSTAELGIYEMRQSGLRPVENPSEHLMTQ- 285
Query: 410 HSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQ 467
SD + L+G A+AV M+G R FLIE QAL S +T R G R +M+++VL K+
Sbjct: 286 -SDLK-LSGTAIAVAMEGVRPFLIETQALVSSAVYATPQRSSTGFDTRRMNMLLAVLEKR 343
Query: 468 AGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRM 527
AG KL + +FLN+ G+ L + A DLAV A+ SS L+ +P G+ GE+GL GE+R
Sbjct: 344 AGFKLVQKDVFLNIAGGIRLADPASDLAVITAVLSSSLDIALPEGVCLTGEVGLSGEVRP 403
Query: 528 VSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
V R+E+R+ ++G+R I+P++ L+T G+ + IG K ++E +F
Sbjct: 404 VGRIEQRIMEAERIGFRAIILPEANLHGLSTEGY-NIRLIGVKTVEEAFRKLF 455
>gi|167748023|ref|ZP_02420150.1| hypothetical protein ANACAC_02761 [Anaerostipes caccae DSM 14662]
gi|317472495|ref|ZP_07931816.1| DNA repair protein RadA [Anaerostipes sp. 3_2_56FAA]
gi|167652541|gb|EDR96670.1| DNA repair protein RadA [Anaerostipes caccae DSM 14662]
gi|316900009|gb|EFV22002.1| DNA repair protein RadA [Anaerostipes sp. 3_2_56FAA]
Length = 451
Score = 335 bits (859), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 190/469 (40%), Positives = 286/469 (60%), Gaps = 24/469 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T + CS+CG+ +W G C AC+S T ++ V ++ + P+ +
Sbjct: 5 KTVFFCSECGHESSKWLGQCPACKSWNTFV------EEKQSVTKKGGAKPRRASASPMNM 58
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
EV+ ++ RIP +G+ E+ RVLGGG+V GSL L+GGDPG+GKSTLLLQ+ +
Sbjct: 59 SEVSIKSEE---RIP-TGI--GELDRVLGGGIVTGSLSLVGGDPGIGKSTLLLQVCRNLV 112
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+ V+YVSGEES QI RA+R+ +EL L+ T +E+I+E ++ + P +
Sbjct: 113 NAK-----RKVLYVSGEESAHQIKMRAERIGAFEDELLLFCETILEEILEGIRKVRPEFV 167
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
+IDSIQT++ + +AG + QV+E T+ ++R AK+ NI V + GHVTK G +AGPR LE
Sbjct: 168 VIDSIQTMFSEELTAAAGSVSQVREVTAQMMRIAKEENIAVFIVGHVTKEGVVAGPRTLE 227
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EGE+ ++YR+LR VKNRFGST+E+GVFEM GL V NPSK+ L+ + D
Sbjct: 228 HMVDTVLYFEGEREAAYRILRGVKNRFGSTNEIGVFEMCADGLTEVENPSKMMLNGRPVD 287
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVLMKQAGL 470
+ +G V ++G+R LIEIQAL S R GI +R +++++VL K+ GL
Sbjct: 288 A---SGSVVVCSLEGTRPILIEIQALISPTSFQMPRRTAVGIDYNRVNLLMAVLEKRVGL 344
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
+L ++N+ G+ L E A DL + AI SS+ P+P GE+GL GE+R VS+
Sbjct: 345 QLGGCDAYVNLAGGMRLGEPAIDLGIILAIASSYKNIPLPEDTIIFGEVGLVGEVRRVSQ 404
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVV 579
++R+ KLG++ CI+PK+ SL M +G N++E ++ +
Sbjct: 405 GDQRIKEAEKLGFKTCILPKANVDSLKIR--TNMRLLGVANVREALDCI 451
>gi|306832323|ref|ZP_07465477.1| DNA repair protein RadA [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
gi|304425762|gb|EFM28880.1| DNA repair protein RadA [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
Length = 433
Score = 335 bits (859), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 194/455 (42%), Positives = 272/455 (59%), Gaps = 26/455 (5%)
Query: 129 WGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRLLEVNKGMKQLDWRIPL 188
G C C S + + + V T KP +++ V + ++ +D
Sbjct: 1 MGRCPNCSSWTSFVEEVEVQEVKNARVSLTGEKSKPTKLKDVSSIHYSRTKTGMD----- 55
Query: 189 SGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSG 248
E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ +AD V+YVSG
Sbjct: 56 ------EFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSIQLAD------KGTVLYVSG 103
Query: 249 EESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGS 308
EES EQI R++R+ E +LY+ T+++ I +++ + P LIIDSIQT+ ++G
Sbjct: 104 EESAEQIKLRSERLGDIDNEFYLYAETNMQAIRAQIEQIQPDFLIIDSIQTIMSPDISGV 163
Query: 309 AGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSS 368
G + QV+E T+ L++ AK NI + GHVTK G +AGPR+LEH+VD VLY EGE+ +
Sbjct: 164 QGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGQLAGPRMLEHMVDTVLYFEGERHHT 223
Query: 369 YRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGS 428
+R+LR+VKNRFGST+E+G+FEM GL V NPS++FL E+ + G A+ V M+GS
Sbjct: 224 FRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGA---TGSAIVVTMEGS 280
Query: 429 RSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGLKLQENAIFLNVVSGVA 486
R L E+QAL R G+ +R +I++VL K+ GL LQ +L GV
Sbjct: 281 RPILAEVQALVTPTVFGNAKRTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVK 340
Query: 487 LTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKC 546
L E A DLAVA AI SS+ E P AFIGEIGL GE+R V+R+E+R++ AKLG+ K
Sbjct: 341 LDEPAIDLAVAVAIASSYKEKPTNPQEAFIGEIGLTGEIRRVTRIEQRINEAAKLGFTKV 400
Query: 547 IVPKSAEKSLATLGF-EQMEFIGCKNLKEVINVVF 580
PK+ SL+ + + ++ IG + EV+ VF
Sbjct: 401 YAPKN---SLSGIDIPDNIQVIGVTTVGEVLKQVF 432
>gi|34498429|ref|NP_902644.1| DNA repair protein RadA [Chromobacterium violaceum ATCC 12472]
gi|34104283|gb|AAQ60642.1| DNA repair protein radA [Chromobacterium violaceum ATCC 12472]
Length = 453
Score = 335 bits (859), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 189/447 (42%), Positives = 264/447 (59%), Gaps = 31/447 (6%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLP-----QKPEE 166
N+T + C++CG +W G C C + T+ A + P Q +W QK E
Sbjct: 4 NKTVFSCTECGGQSPKWQGQCPHCSAWNTLVEAVAAPAAASPRFQ-SWAANVTKVQKLSE 62
Query: 167 VQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQ 226
VQ G+ +LD RVLGGG+V G++VLIGGDPG+GKSTLLLQ
Sbjct: 63 VQTEETPRDPSGIDELD--------------RVLGGGIVRGAVVLIGGDPGIGKSTLLLQ 108
Query: 227 MAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQP 286
+ +G V+YVSGEES +QI RA R+ + T + L + IE+I+E ++
Sbjct: 109 A------LSQIGRSRKVLYVSGEESAQQIALRASRLALDTSSVDLLAEICIENILETLKR 162
Query: 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIA 346
P ++IDSIQT+Y V + G + QV+EC + L R AK++ I VLL GHVTK G +A
Sbjct: 163 EQPEVVVIDSIQTLYTEQVTSAPGSVSQVRECAAQLTRMAKQSGITVLLVGHVTKEGSLA 222
Query: 347 GPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFL 406
GPRVLEH+VD VLY EG+ SSYR++R++KNRFG+ +ELGVF M+ GL+ VSNPS IFL
Sbjct: 223 GPRVLEHMVDTVLYFEGDSHSSYRMIRAIKNRFGAVNELGVFAMTDRGLKGVSNPSAIFL 282
Query: 407 SEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVL 464
S D +AG V V +G+R L+EIQAL G R G++ +R M+++VL
Sbjct: 283 SSYRDD---VAGSCVLVTQEGTRPLLVEIQALVDDCHGFQPKRLTVGLEQNRLSMLLAVL 339
Query: 465 MKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGE 524
+ G+ + +FLN V GV + E A DLA+ A+ SS +P + GE+GL GE
Sbjct: 340 HRHGGVACFDQDVFLNAVGGVKINEPAADLAIILAMVSSLRNKALPEKLVVFGEVGLAGE 399
Query: 525 LRMVSRMEKRVSTVAKLGYRKCIVPKS 551
+R V+R ++R+ AKLG+ + IVP +
Sbjct: 400 VRPVTRGQERLKEAAKLGFTRAIVPTA 426
>gi|212550411|ref|YP_002308728.1| DNA repair protein RadA [Candidatus Azobacteroides
pseudotrichonymphae genomovar. CFP2]
gi|212548649|dbj|BAG83317.1| DNA repair protein Sms [Candidatus Azobacteroides
pseudotrichonymphae genomovar. CFP2]
Length = 455
Score = 335 bits (859), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 183/445 (41%), Positives = 268/445 (60%), Gaps = 23/445 (5%)
Query: 116 WVCSDCGYTDGQWWGMCRACESVGTMK-RYSAGESDEGPVVQRTWLPQKPEEVQPVRLLE 174
+ CS CG +W G C C T K ++ + + ++L + + P+ L
Sbjct: 6 FTCSQCGNNSPKWIGKCPICNKWNTYKEKFVNKPVSTQNLSESSYLNRF--QSNPLLLKN 63
Query: 175 VNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADV 234
+ K D I ++ + E RVLG GLVPGSLVLIGG+PG+GKST +LQ
Sbjct: 64 IQK-----DNEIRMN-MIDQEFNRVLGEGLVPGSLVLIGGEPGIGKSTFVLQTI------ 111
Query: 235 HDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALII 294
L +Y+SGEES +Q+ RA+R+ I E F+ T++E I++ + + P ++I
Sbjct: 112 --LKLKYKTLYISGEESTKQLKLRAERLNIENENCFIVCETNLETILDHINHIRPNLVVI 169
Query: 295 DSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHI 354
DSIQT++ + S G + Q++E S LL FAKK +I LL GH+ K G+IAGP++LEHI
Sbjct: 170 DSIQTLFTERIKSSPGTISQIRENASILLTFAKKNDISFLLIGHINKEGNIAGPKILEHI 229
Query: 355 VDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSE 414
VD VL EG+K YR+LR++KNRFG+T ELG++EM Q GL+ VSNPS++ LS+ + E
Sbjct: 230 VDTVLQFEGDKSHMYRILRNIKNRFGNTAELGIYEMRQNGLREVSNPSELLLSQNY---E 286
Query: 415 FLAGLAVAVIMDGSRSFLIEIQAL---CVSGSTVSRHVNGIQASRADMIISVLMKQAGLK 471
L+G+A+A +++G R+FLIE QAL G R G R +M+++VL K+ G K
Sbjct: 287 GLSGIAIAAVIEGIRAFLIETQALVSKAAYGGVPQRSSTGFDIYRMNMLLAVLEKKVGFK 346
Query: 472 LQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRM 531
L + +FLN+V G+ + + A DL+V +AI SS L+ I GEIGL GE+R VSR+
Sbjct: 347 LSQKDVFLNIVGGLRIIDPAIDLSVVSAILSSNLDISIKQETCMCGEIGLSGEIRPVSRI 406
Query: 532 EKRVSTVAKLGYRKCIVPKSAEKSL 556
E R+S KLG+++ I+P + K
Sbjct: 407 ESRISEAEKLGFQRIIIPTNNLKEF 431
>gi|373109153|ref|ZP_09523432.1| DNA repair protein RadA [Myroides odoratimimus CCUG 10230]
gi|423129179|ref|ZP_17116854.1| DNA repair protein RadA [Myroides odoratimimus CCUG 12901]
gi|371645151|gb|EHO10677.1| DNA repair protein RadA [Myroides odoratimimus CCUG 10230]
gi|371649377|gb|EHO14857.1| DNA repair protein RadA [Myroides odoratimimus CCUG 12901]
Length = 456
Score = 335 bits (858), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 181/441 (41%), Positives = 275/441 (62%), Gaps = 20/441 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEV-QPVR 171
+T + C CG +W G C AC+ T+ + ++ + P ++V +P++
Sbjct: 5 KTAFFCQSCGTQYAKWQGQCNACKEWNTLVEEVIQKEEKTAWKAVSSSPNTMKKVAKPLK 64
Query: 172 LLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAII 231
+ E++ + I ++ + G E+ RVLGGGLVPGS+VL+GG+PG+GKSTLLLQ++
Sbjct: 65 VREIDSTEE-----IRMNTMDG-ELNRVLGGGLVPGSMVLLGGEPGIGKSTLLLQIS--- 115
Query: 232 ADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRA 291
L P +YVSGEES +QI RA+R+ A + ++ + T+ ++I +++ + P
Sbjct: 116 -----LRLPFKTLYVSGEESQKQIKMRAERINPANDNCYILTETNTQNIFRQIEEIQPDV 170
Query: 292 LIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVL 351
LIIDSIQT++ + SAG + Q+KECT+ L +FAK+T PVL+ GH+TK G IAGP++L
Sbjct: 171 LIIDSIQTLHTEYIESSAGTVSQIKECTAELTKFAKETGTPVLIIGHITKDGSIAGPKML 230
Query: 352 EHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHS 411
EH+VD VL EG++ YR+LR+ KNRFGST ELG++EM GL+ VSNPS+I +S H
Sbjct: 231 EHMVDTVLQFEGDRNHVYRILRANKNRFGSTAELGIYEMQGSGLREVSNPSEILIS--HK 288
Query: 412 DSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAG 469
+ E L+G A+A ++G R ++E+QAL + T R G R +MI++VL K+AG
Sbjct: 289 EEE-LSGTAIAATLEGMRPLMVEVQALVSTAVYGTPQRSATGYNLKRLNMILAVLEKRAG 347
Query: 470 LKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVS 529
+L + +FLN+ G+ + + A DL V AAI SS + I F GE+GL GE+R V+
Sbjct: 348 FRLGQKDVFLNITGGITVDDPAIDLGVVAAILSSDQDMSIGKDFTFAGEVGLSGEIRPVN 407
Query: 530 RMEKRVSTVAKLGYRKCIVPK 550
R+++R+ KLG+ V K
Sbjct: 408 RVDQRIQEAEKLGFSTIFVSK 428
>gi|416213927|ref|ZP_11622620.1| DNA repair protein RadA [Neisseria meningitidis M01-240013]
gi|325144180|gb|EGC66487.1| DNA repair protein RadA [Neisseria meningitidis M01-240013]
Length = 473
Score = 335 bits (858), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 193/477 (40%), Positives = 280/477 (58%), Gaps = 32/477 (6%)
Query: 109 GKANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKP--EE 166
K +T + C++CG T +W G C C T++ A + Q +W +
Sbjct: 16 AKTLKTLYQCTECGGTSPKWQGKCPHCGEWNTLQESLAAPEPKNARFQ-SWAADTSTVQS 74
Query: 167 VQPVRLLEVNK---GMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTL 223
+ V EV + GM +LD RVLGGGLV G+++L+GGDPG+GKSTL
Sbjct: 75 LSAVTAAEVPRNPTGMSELD--------------RVLGGGLVDGAVILLGGDPGIGKSTL 120
Query: 224 LLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEK 283
LLQ A +A + V+YVSGEES +Q+ RA R+ + TE + L + +E I
Sbjct: 121 LLQTIAKMA------QSRKVLYVSGEESAQQVALRAQRLELPTEGVNLLAEIRMEAIQTA 174
Query: 284 VQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSG 343
++ P ++IDSIQT+Y + + G + QV+EC + L R AK+ I ++L GHVTK G
Sbjct: 175 LKQHQPEVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRMAKQMGIAMILVGHVTKDG 234
Query: 344 DIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSK 403
IAGPRVLEH+VD VLY EG++ S+YR++R++KNRFG+ +ELGVF M++ GL+ VSNPS
Sbjct: 235 AIAGPRVLEHMVDTVLYFEGDQHSNYRMIRAIKNRFGAANELGVFAMTENGLKGVSNPSA 294
Query: 404 IFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMII 461
IFL+ D+ G V V +GSR L+EIQAL G T R G++ +R M++
Sbjct: 295 IFLASYRDDT---PGSCVLVTQEGSRPLLVEIQALVDDAHGFTPKRLTVGLEQNRLAMLL 351
Query: 462 SVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGL 521
+VL + G+ + +FLN V GV + E A DLAV A+ SSF P+P + GEIGL
Sbjct: 352 AVLNRHGGIACFDQDVFLNAVGGVKIGEPAADLAVILAMLSSFRNRPLPEKMVAFGEIGL 411
Query: 522 GGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINV 578
GE+R V+R ++R+ KLG+++ IVPK+ A F ++ G +L+E I++
Sbjct: 412 SGEVRPVARGQERLKEAEKLGFKRAIVPKANMPRNAK-EFPNLKIYGVSSLQEAIDI 467
>gi|387625562|ref|YP_006061734.1| putative DNA repair protein [Streptococcus pneumoniae INV104]
gi|444383495|ref|ZP_21181684.1| DNA repair protein RadA [Streptococcus pneumoniae PCS8106]
gi|444384265|ref|ZP_21182361.1| DNA repair protein RadA [Streptococcus pneumoniae PCS8203]
gi|301793344|emb|CBW35705.1| putative DNA repair protein [Streptococcus pneumoniae INV104]
gi|444249287|gb|ELU55780.1| DNA repair protein RadA [Streptococcus pneumoniae PCS8106]
gi|444252919|gb|ELU59379.1| DNA repair protein RadA [Streptococcus pneumoniae PCS8203]
Length = 420
Score = 335 bits (858), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 186/421 (44%), Positives = 268/421 (63%), Gaps = 26/421 (6%)
Query: 163 KPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKST 222
KP ++ V + VN+ +++ E RVLGGG+VPGSLVLIGGDPG+GKST
Sbjct: 22 KPMKLAEVTSINVNRTKTEME-----------EFNRVLGGGVVPGSLVLIGGDPGIGKST 70
Query: 223 LLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVE 282
LLLQ++ ++ V V+YVSGEES +QI RA+R+ E +LY+ T+++ +
Sbjct: 71 LLLQVSTQLSQV------GTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSVRA 124
Query: 283 KVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKS 342
+V+ + P LIIDSIQT+ ++G G + QV+E T+ L++ AK NI + + GHVTK
Sbjct: 125 EVERIQPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELMQLAKTNNIAIFIVGHVTKE 184
Query: 343 GDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPS 402
G +AGPR+LEH+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS
Sbjct: 185 GTLAGPRMLEHMVDTVLYFEGERHHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPS 244
Query: 403 KIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMI 460
++FL E+ + G ++ V M+G+R L E+QAL R G+ +RA +I
Sbjct: 245 QVFLEERLDGA---TGSSIVVTMEGTRPILAEVQALVTPTMFGNAKRTTTGLDFNRASLI 301
Query: 461 ISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIG 520
+SVL K+AGL LQ +L GV L E A DLAVA AI SS+ + P F+GE+G
Sbjct: 302 MSVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKPTNPQECFVGELG 361
Query: 521 LGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGF-EQMEFIGCKNLKEVINVV 579
L GE+R V+R+E+R++ AKLG+ K VPK+ SL + ++++ IG ++EV+ V
Sbjct: 362 LTGEIRRVNRIEQRINEAAKLGFTKIYVPKN---SLTGITLPKEIQVIGVTTIQEVLKKV 418
Query: 580 F 580
F
Sbjct: 419 F 419
>gi|418290266|ref|ZP_12902434.1| DNA repair protein RadA [Neisseria meningitidis NM220]
gi|372201914|gb|EHP15787.1| DNA repair protein RadA [Neisseria meningitidis NM220]
Length = 488
Score = 335 bits (858), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 193/477 (40%), Positives = 280/477 (58%), Gaps = 32/477 (6%)
Query: 109 GKANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKP--EE 166
K +T + C++CG T +W G C C T++ A + Q +W +
Sbjct: 31 AKTLKTLYQCTECGGTSPKWQGKCPHCGEWNTLQESLAAPEPKNARFQ-SWAADTSTVQS 89
Query: 167 VQPVRLLEVNK---GMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTL 223
+ V EV + GM +LD RVLGGGLV G+++L+GGDPG+GKSTL
Sbjct: 90 LSTVTATEVPRNPTGMGELD--------------RVLGGGLVDGAVILLGGDPGIGKSTL 135
Query: 224 LLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEK 283
LLQ A +A + V+YVSGEES +Q+ RA R+ + TE + L + +E I
Sbjct: 136 LLQTIAKMA------QSRKVLYVSGEESAQQVALRAQRLELPTEGVNLLAEIRMEAIQAA 189
Query: 284 VQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSG 343
++ P ++IDSIQT+Y + + G + QV+EC + L R AK+ I ++L GHVTK G
Sbjct: 190 LKQHQPEVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRMAKQMGIAMILVGHVTKDG 249
Query: 344 DIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSK 403
IAGPRVLEH+VD VLY EG++ S+YR++R++KNRFG+ +ELGVF M++ GL+ VSNPS
Sbjct: 250 AIAGPRVLEHMVDTVLYFEGDQHSNYRMIRAIKNRFGAANELGVFAMTENGLKGVSNPSA 309
Query: 404 IFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMII 461
IFL+ D+ G V V +GSR L+EIQAL G T R G++ +R M++
Sbjct: 310 IFLASYRDDT---PGSCVLVTQEGSRPLLVEIQALVDDAHGFTPKRLTVGLEQNRLAMLL 366
Query: 462 SVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGL 521
+VL + G+ + +FLN V GV + E A DLAV A+ SSF P+P + GEIGL
Sbjct: 367 AVLNRHGGIACFDQDVFLNAVGGVKIGEPAADLAVILAMLSSFRNRPLPEKMVAFGEIGL 426
Query: 522 GGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINV 578
GE+R V+R ++R+ KLG+++ IVPK+ A F ++ G +L+E I++
Sbjct: 427 SGEVRPVARGQERLKEAEKLGFKRAIVPKANMPRNAK-EFPNLKIYGVSSLQEAIDI 482
>gi|402305178|ref|ZP_10824237.1| DNA repair protein RadA [Haemophilus sputorum HK 2154]
gi|400376291|gb|EJP29178.1| DNA repair protein RadA [Haemophilus sputorum HK 2154]
Length = 481
Score = 335 bits (858), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 190/483 (39%), Positives = 284/483 (58%), Gaps = 39/483 (8%)
Query: 109 GKANRTNWVCSDCGYTDGQWWGMCRACESVGTM---------KRYSAGESDEGPVVQRTW 159
KA +T +VC+DCG +W G C+ C S T+ + S G+ G + +
Sbjct: 23 AKAPKTAYVCNDCGAEYSKWMGQCKECLSWNTISEVRLISAKENKSKGDRFSGYAGETSG 82
Query: 160 LPQKPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVG 219
Q E+ + + G ++LD RVLGGG+VPGS +LIGG PG G
Sbjct: 83 KVQALSEISLQEVPRFSSGFQELD--------------RVLGGGVVPGSAILIGGHPGAG 128
Query: 220 KSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIED 279
KSTLLLQ+ L + P +YV+GEES++Q+ RA+R+ + TE L + S T +E
Sbjct: 129 KSTLLLQVMC------GLSQALPTLYVTGEESLQQVAMRANRLGLPTEHLKMLSETSVEH 182
Query: 280 IVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHV 339
I P+ ++IDSIQ ++L + S G + QV+EC + L R+AK + +++ GHV
Sbjct: 183 ICNIADQEKPKLMVIDSIQVMHLADIQSSPGSVAQVRECAAFLTRYAKTRQVAIIMVGHV 242
Query: 340 TKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVS 399
TK G +AGP+VLEH +DA L +EGE S +R LRS KNRFG+ +ELGVF M++ GL+ V
Sbjct: 243 TKDGTLAGPKVLEHAIDASLLLEGESDSRFRTLRSQKNRFGAVNELGVFAMTEQGLKEVK 302
Query: 400 NPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVS---RHVNGIQASR 456
NPS IFLS SD E + G +V V+ +G+R L+EIQAL V S ++ R G+ +R
Sbjct: 303 NPSAIFLS--RSD-EQVPGSSVMVLWEGTRPLLVEIQAL-VDHSMLANPRRVAVGLDHNR 358
Query: 457 ADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFI 516
++++VL + GL++ + +F+NVV GV +TET+ DLA+ A+ SSF P+P +
Sbjct: 359 LSLLLAVLHRHGGLQMSDQDVFVNVVGGVKVTETSADLALILALISSFRNRPLPQDLVVF 418
Query: 517 GEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVI 576
GE+GL GE+R V ++R+S AK G+++ IVP + A + ME I K L + +
Sbjct: 419 GEVGLAGEIRPVPSGQERISEAAKHGFKRAIVPYANAPKKA---IKDMEVITVKKLSDAL 475
Query: 577 NVV 579
+++
Sbjct: 476 DII 478
>gi|154498005|ref|ZP_02036383.1| hypothetical protein BACCAP_01985 [Bacteroides capillosus ATCC
29799]
gi|150272995|gb|EDN00152.1| DNA repair protein RadA [Pseudoflavonifractor capillosus ATCC
29799]
Length = 460
Score = 335 bits (858), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 195/485 (40%), Positives = 281/485 (57%), Gaps = 45/485 (9%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTM---------------KRYSAGESDEGPVVQR 157
+T + C++CG +W G C AC + T+ +AG+ G R
Sbjct: 4 KTVFYCTECGNETAKWAGQCPACRAWNTLVEQPAETKKKTASVLSASAAGQRRSGGGFNR 63
Query: 158 TWLPQKPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPG 217
P+ EV L GM +LD RVLGGG V GSLVL+GG PG
Sbjct: 64 ---PRPISEVSSTHELRFETGMSELD--------------RVLGGGAVKGSLVLVGGAPG 106
Query: 218 VGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDI 277
+GKSTL+LQ+ +L + V+YVSGEES QI RA+R+ + E L+L S T++
Sbjct: 107 IGKSTLMLQIC------DNLCRFAKVLYVSGEESERQIKLRAERLHVNGEGLYLLSETNL 160
Query: 278 EDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAG 337
+DIVE V L P LI+DSIQT+Y + + G + QVK+CT L++ AK I V + G
Sbjct: 161 DDIVEAVNELQPDILIVDSIQTLYNGELTTAPGSVGQVKDCTMTLMQLAKGQGITVFVIG 220
Query: 338 HVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQA 397
HV K G IAGP+VLEH+VD VLY EGE+ +YR+LR+ KNRFG+T+E+GVFEM+ GL
Sbjct: 221 HVNKEGSIAGPKVLEHMVDCVLYFEGEQNMAYRILRAAKNRFGATNEIGVFEMADTGLTE 280
Query: 398 VSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQAS 455
V NPS++ LS + ++ G V +M+G R L E+QAL S + R NG +
Sbjct: 281 VPNPSEMLLSGRPENT---PGTCVTCVMEGVRPVLAEVQALLAPTSFNVPRRTSNGFDYN 337
Query: 456 RADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAF 515
RA ++++VL K+ GL + ++NV+ G+ L E A DLA+ A+ SSF + PIP+ +
Sbjct: 338 RAMLLLAVLEKRGGLLVNSCDAYINVIGGLNLDEPAADLAMVMALASSFRDKPIPSDLVA 397
Query: 516 IGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEV 575
IGE+GL GELR V+ + +R+S V ++G+ KC++P A S E ++ I +N++E
Sbjct: 398 IGEVGLTGELRAVNGLGQRLSEVRRIGFTKCLIP--ARNSGKLTEPEGLQLIRVRNIREA 455
Query: 576 INVVF 580
+ +
Sbjct: 456 LAAIL 460
>gi|421539961|ref|ZP_15986114.1| DNA repair protein RadA [Neisseria meningitidis 93004]
gi|402320245|gb|EJU55736.1| DNA repair protein RadA [Neisseria meningitidis 93004]
Length = 459
Score = 335 bits (858), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 193/476 (40%), Positives = 280/476 (58%), Gaps = 32/476 (6%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKP--EEV 167
K +T + C++CG T +W G C C T++ A + Q +W + +
Sbjct: 3 KTLKTLYQCTECGGTSPKWQGKCPHCGEWNTLQESLAAPEPKNARFQ-SWAADTSTVQSL 61
Query: 168 QPVRLLEVNK---GMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLL 224
V EV + GM +LD RVLGGGLV G+++L+GGDPG+GKSTLL
Sbjct: 62 STVTATEVPRNPTGMGELD--------------RVLGGGLVDGAVILLGGDPGIGKSTLL 107
Query: 225 LQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKV 284
LQ A +A + V+YVSGEES +Q+ RA R+ + TE + L + +E I +
Sbjct: 108 LQTIAKMA------QSRKVLYVSGEESAQQVALRAQRLELPTEGVNLLAEIRMEAIQAAL 161
Query: 285 QPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGD 344
+ P ++IDSIQT+Y + + G + QV+EC + L R AK+ I ++L GHVTK G
Sbjct: 162 KQHQPEVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRMAKQMGIAMILVGHVTKDGA 221
Query: 345 IAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKI 404
IAGPRVLEH+VD VLY EG++ S+YR++R++KNRFG+ +ELGVF M++ GL+ VSNPS I
Sbjct: 222 IAGPRVLEHMVDTVLYFEGDQHSNYRMIRAIKNRFGAANELGVFAMTENGLKGVSNPSAI 281
Query: 405 FLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIIS 462
FL+ D+ G V V +GSR L+EIQAL G T R G++ +R M+++
Sbjct: 282 FLASYRDDT---PGSCVLVTQEGSRPLLVEIQALVDDAHGFTPKRLTVGLEQNRLAMLLA 338
Query: 463 VLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLG 522
VL + G+ + +FLN V GV + E A DLAV A+ SSF P+P + GEIGL
Sbjct: 339 VLNRHGGIACFDQDVFLNAVGGVKIGEPAADLAVILAMLSSFRNRPLPEKMVAFGEIGLS 398
Query: 523 GELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINV 578
GE+R V+R ++R+ KLG+++ IVPK+ A F ++ G +L+E I++
Sbjct: 399 GEVRPVARGQERLKEAEKLGFKRAIVPKANMPRHAK-EFPNLKIYGVSSLQEAIDI 453
>gi|416172708|ref|ZP_11608785.1| DNA repair protein RadA [Neisseria meningitidis OX99.30304]
gi|325129905|gb|EGC52706.1| DNA repair protein RadA [Neisseria meningitidis OX99.30304]
Length = 459
Score = 335 bits (858), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 193/476 (40%), Positives = 281/476 (59%), Gaps = 32/476 (6%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKP--EEV 167
K +T + C++CG T +W G C C T++ A + Q +W + +
Sbjct: 3 KTLKTLYQCTECGGTSPKWQGKCPHCGEWNTLQESLAAPEPKNARFQ-SWAADTSTVQSL 61
Query: 168 QPVRLLEVNK---GMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLL 224
V EV + GM +LD RVLGGGLV G+++L+GGDPG+GKSTLL
Sbjct: 62 SSVTATEVPRNPTGMGELD--------------RVLGGGLVDGAVILLGGDPGIGKSTLL 107
Query: 225 LQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKV 284
LQ A +A + V+YVSGEES +Q+ RA R+ + TE + L + +E I +
Sbjct: 108 LQTIAKMA------QSRKVLYVSGEESAQQVALRAQRLELPTEGVNLLAEIRMEAIQAAL 161
Query: 285 QPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGD 344
+ P ++IDSIQT+Y + + G + QV+EC + L R AK+ I ++L GHVTK G
Sbjct: 162 KQHQPEVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRMAKQMGIAMILVGHVTKDGA 221
Query: 345 IAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKI 404
IAGPRVLEH+VD VLY EG++ S+YR++R++KNRFG+ +ELGVF M++ GL+ VSNPS I
Sbjct: 222 IAGPRVLEHMVDTVLYFEGDQHSNYRMIRAIKNRFGAANELGVFAMTENGLKGVSNPSAI 281
Query: 405 FLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIIS 462
FL+ D+ G V V +GSR L+EIQAL G T R G++ +R M+++
Sbjct: 282 FLASYRDDT---PGSCVLVTQEGSRPLLVEIQALVDDAHGFTPKRLTVGLEQNRLAMLLA 338
Query: 463 VLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLG 522
VL + G+ + +FLN V GV + E A DLAV A+ SSF + P+P + GEIGL
Sbjct: 339 VLNRHGGIACFDQDVFLNAVGGVKIGEPAADLAVILAMLSSFRDRPLPEKMVAFGEIGLS 398
Query: 523 GELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINV 578
GE+R V+R ++R+ KLG+++ IVPK+ A F ++ G +L+E I++
Sbjct: 399 GEVRPVARGQERLKEAEKLGFKRAIVPKANMPRNAK-EFPNLKIYGVSSLQEAIDI 453
>gi|385324464|ref|YP_005878903.1| DNA repair protein RadA (DNA repair protein Sms) [Neisseria
meningitidis 8013]
gi|261392851|emb|CAX50432.1| DNA repair protein RadA (DNA repair protein Sms) [Neisseria
meningitidis 8013]
Length = 459
Score = 335 bits (858), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 193/477 (40%), Positives = 280/477 (58%), Gaps = 32/477 (6%)
Query: 109 GKANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKP--EE 166
K +T + C++CG T +W G C C T++ A + Q +W +
Sbjct: 2 AKTLKTLYQCTECGGTSPKWQGKCPHCGEWNTLQESLAAPEPKNARFQ-SWAADTSTVQS 60
Query: 167 VQPVRLLEVNK---GMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTL 223
+ V EV + GM +LD RVLGGGLV G+++L+GGDPG+GKSTL
Sbjct: 61 LSAVTAAEVPRNPTGMSELD--------------RVLGGGLVDGAVILLGGDPGIGKSTL 106
Query: 224 LLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEK 283
LLQ A +A + V+YVSGEES +Q+ RA R+ + TE + L + +E I
Sbjct: 107 LLQTIAKMA------QSRKVLYVSGEESAQQVALRAQRLELPTEGVNLLAEIRMEAIQTA 160
Query: 284 VQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSG 343
++ P ++IDSIQT+Y + + G + QV+EC + L R AK+ I ++L GHVTK G
Sbjct: 161 LKQHQPEVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRMAKQMGIAMILVGHVTKDG 220
Query: 344 DIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSK 403
IAGPRVLEH+VD VLY EG++ S+YR++R++KNRFG+ +ELGVF M++ GL+ VSNPS
Sbjct: 221 AIAGPRVLEHMVDTVLYFEGDQHSNYRMIRAIKNRFGAANELGVFAMTENGLKGVSNPSA 280
Query: 404 IFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMII 461
IFL+ D+ G V V +GSR L+EIQAL G T R G++ +R M++
Sbjct: 281 IFLASYRDDT---PGSCVLVTQEGSRPLLVEIQALVDDAHGFTPKRLTVGLEQNRLAMLL 337
Query: 462 SVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGL 521
+VL + G+ + +FLN V GV + E A DLAV A+ SSF P+P + GEIGL
Sbjct: 338 AVLNRHGGIACFDQDVFLNAVGGVKIGEPAADLAVILAMLSSFRNRPLPEKMVAFGEIGL 397
Query: 522 GGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINV 578
GE+R V+R ++R+ KLG+++ IVPK+ A F ++ G +L+E I++
Sbjct: 398 SGEVRPVARGQERLKEAEKLGFKRAIVPKANMPRNAK-EFPNLKIYGVSSLQEAIDI 453
>gi|225076233|ref|ZP_03719432.1| hypothetical protein NEIFLAOT_01270 [Neisseria flavescens
NRL30031/H210]
gi|224952357|gb|EEG33566.1| hypothetical protein NEIFLAOT_01270 [Neisseria flavescens
NRL30031/H210]
Length = 458
Score = 335 bits (858), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 194/476 (40%), Positives = 280/476 (58%), Gaps = 32/476 (6%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKP--EEV 167
KA +T + C++CG T +W G C C T++ A + Q +W + +
Sbjct: 3 KAPKTIYQCTECGGTSPKWQGKCPHCGEWNTLQESLAAPEPKNARFQ-SWAADTSTVQSL 61
Query: 168 QPVRLLEVNK---GMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLL 224
V EV + GM +LD RVLGGGLV G+++L+GG+PG+GKSTLL
Sbjct: 62 SAVTAAEVPRNPTGMGELD--------------RVLGGGLVDGAVILLGGNPGIGKSTLL 107
Query: 225 LQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKV 284
LQ A +A + V+YVSGEES +Q+ RA R+ + TE + L + +E I +
Sbjct: 108 LQTIAKMA------QSRKVLYVSGEESAQQVALRAQRLELPTEGVNLLAEIRMEAIQAAL 161
Query: 285 QPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGD 344
+ P ++IDSIQT+Y + + G + QV+EC + L R AK+ I ++L GHVTK G
Sbjct: 162 KQHQPEVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRMAKQMGIAMILVGHVTKDGA 221
Query: 345 IAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKI 404
IAGPRVLEH+VD VLY EG++ S+YR++R++KNRFG+ +ELGVF M++ GL+ VSNPS I
Sbjct: 222 IAGPRVLEHMVDTVLYFEGDQHSNYRMIRAIKNRFGAANELGVFAMTENGLKGVSNPSAI 281
Query: 405 FLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIIS 462
FL+ D+ G V V +GSR L+EIQAL G T R G++ +R M+++
Sbjct: 282 FLASYRDDT---PGSCVLVTQEGSRPLLVEIQALVDDAHGFTPKRLTVGLEQNRLAMLLA 338
Query: 463 VLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLG 522
VL + G+ + +FLN V GV + E A DLAV A+ SSF P+P GEIGL
Sbjct: 339 VLNRHGGIACFDQDVFLNAVGGVKIGEPAADLAVILAMLSSFRNRPMPEKTVVFGEIGLS 398
Query: 523 GELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINV 578
GE+R V+R ++R+ KLG+++ IVPK+ A F ++ G +L+E I+V
Sbjct: 399 GEVRPVARGQERLKEAEKLGFKRAIVPKANMPRNAK-EFPNLKIYGVSSLQEAIDV 453
>gi|55821795|ref|YP_140237.1| DNA repair protein RadA [Streptococcus thermophilus LMG 18311]
gi|55823713|ref|YP_142154.1| DNA repair protein RadA [Streptococcus thermophilus CNRZ1066]
gi|116628510|ref|YP_821129.1| DNA repair protein RadA [Streptococcus thermophilus LMD-9]
gi|386087424|ref|YP_006003298.1| DNA repair protein radA [Streptococcus thermophilus ND03]
gi|386345535|ref|YP_006041699.1| DNA repair protein [Streptococcus thermophilus JIM 8232]
gi|387910517|ref|YP_006340823.1| DNA repair protein RadA [Streptococcus thermophilus MN-ZLW-002]
gi|55737780|gb|AAV61422.1| DNA repair protein [Streptococcus thermophilus LMG 18311]
gi|55739698|gb|AAV63339.1| DNA repair protein [Streptococcus thermophilus CNRZ1066]
gi|116101787|gb|ABJ66933.1| Predicted ATP-dependent serine protease [Streptococcus thermophilus
LMD-9]
gi|312279137|gb|ADQ63794.1| DNA repair protein radA [Streptococcus thermophilus ND03]
gi|339278996|emb|CCC20744.1| DNA repair protein [Streptococcus thermophilus JIM 8232]
gi|387575452|gb|AFJ84158.1| DNA repair protein RadA [Streptococcus thermophilus MN-ZLW-002]
Length = 415
Score = 335 bits (858), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 182/390 (46%), Positives = 253/390 (64%), Gaps = 13/390 (3%)
Query: 194 NEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVE 253
+E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ +A+ V+YVSGEES E
Sbjct: 37 DEFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLAN------KGTVLYVSGEESAE 90
Query: 254 QIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLM 313
QI R++R+ E +LY+ T+++ + +V+ + P LIIDSIQT+ ++G G +
Sbjct: 91 QIKLRSERLGDIDNEFYLYAETNMQAVRSQVEGIKPDFLIIDSIQTIMSPEISGVQGSVS 150
Query: 314 QVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLR 373
QV+E T+ L++ AK NI + GHVTK G +AGPR+LEH+VD VLY EGE+ ++R+LR
Sbjct: 151 QVREVTAELIQIAKTNNIATFIVGHVTKEGQLAGPRMLEHMVDTVLYFEGERHHTFRILR 210
Query: 374 SVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLI 433
+VKNRFGST+E+G+FEM GL V NPS++FL E+ + G A+ V M+GSR L
Sbjct: 211 AVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGA---TGSAIVVTMEGSRPILA 267
Query: 434 EIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETA 491
E+QAL R G+ +R +I++VL K+ GL LQ +L GV L E A
Sbjct: 268 EVQALVTPTVFGNAKRTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPA 327
Query: 492 GDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKS 551
DLAVA AI SS+ E P AF+GEIGL GE+R V+R+E+R++ AKLG+ K VPK+
Sbjct: 328 IDLAVAVAIASSYKELPTNPQEAFVGEIGLTGEIRRVTRIEQRINEAAKLGFTKIYVPKN 387
Query: 552 AEKSLATLGFEQMEFIGCKNLKEVINVVFT 581
+ + E ++ IG + EV+ VF+
Sbjct: 388 SLHGMKIP--EGIQVIGVTTVGEVLKKVFS 415
>gi|445382970|ref|ZP_21427363.1| DNA repair protein RadA [Streptococcus thermophilus MTCC 5460]
gi|445395935|ref|ZP_21429093.1| DNA repair protein RadA [Streptococcus thermophilus MTCC 5461]
gi|444748286|gb|ELW73262.1| DNA repair protein RadA [Streptococcus thermophilus MTCC 5461]
gi|444748474|gb|ELW73441.1| DNA repair protein RadA [Streptococcus thermophilus MTCC 5460]
Length = 415
Score = 335 bits (858), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 182/390 (46%), Positives = 253/390 (64%), Gaps = 13/390 (3%)
Query: 194 NEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVE 253
+E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ +A+ V+YVSGEES E
Sbjct: 37 DEFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLAN------KGTVLYVSGEESAE 90
Query: 254 QIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLM 313
QI R++R+ E +LY+ T+++ + +V+ + P LIIDSIQT+ ++G G +
Sbjct: 91 QIKLRSERLGDIDNEFYLYAETNMQAVRSQVEGIKPDFLIIDSIQTIMSPEISGVQGSVS 150
Query: 314 QVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLR 373
QV+E T+ L++ AK NI + GHVTK G +AGPR+LEH+VD VLY EGE+ ++R+LR
Sbjct: 151 QVREVTAELIQIAKTNNIATFIVGHVTKEGQLAGPRMLEHMVDTVLYFEGERHHTFRILR 210
Query: 374 SVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLI 433
+VKNRFGST+E+G+FEM GL V NPS++FL E+ + G A+ V M+GSR L
Sbjct: 211 AVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGA---TGSAIVVTMEGSRPILA 267
Query: 434 EIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETA 491
E+QAL R G+ +R +I++VL K+ GL LQ +L GV L E A
Sbjct: 268 EVQALVTPTVFGNAKRTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPA 327
Query: 492 GDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKS 551
DLAVA AI SS+ E P AF+GEIGL GE+R V+R+E+R++ AKLG+ K VPK+
Sbjct: 328 IDLAVAVAIASSYKELPTNPQEAFVGEIGLTGEIRRVTRIEQRINEAAKLGFTKIYVPKN 387
Query: 552 AEKSLATLGFEQMEFIGCKNLKEVINVVFT 581
+ + E ++ IG + EV+ VF+
Sbjct: 388 SLHGMKIP--EGIQVIGVTTVGEVLKKVFS 415
>gi|218767901|ref|YP_002342413.1| DNA repair protein RadA [Neisseria meningitidis Z2491]
gi|433479367|ref|ZP_20436661.1| DNA repair protein RadA [Neisseria meningitidis 63041]
gi|433513141|ref|ZP_20469935.1| DNA repair protein RadA [Neisseria meningitidis 63049]
gi|433519508|ref|ZP_20476229.1| DNA repair protein RadA [Neisseria meningitidis 65014]
gi|433540641|ref|ZP_20497096.1| DNA repair protein RadA [Neisseria meningitidis 63006]
gi|121051909|emb|CAM08215.1| putative DNA repair protein [Neisseria meningitidis Z2491]
gi|432217170|gb|ELK73039.1| DNA repair protein RadA [Neisseria meningitidis 63041]
gi|432248818|gb|ELL04242.1| DNA repair protein RadA [Neisseria meningitidis 63049]
gi|432255499|gb|ELL10828.1| DNA repair protein RadA [Neisseria meningitidis 65014]
gi|432277656|gb|ELL32702.1| DNA repair protein RadA [Neisseria meningitidis 63006]
Length = 459
Score = 335 bits (858), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 193/477 (40%), Positives = 279/477 (58%), Gaps = 32/477 (6%)
Query: 109 GKANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKP--EE 166
K +T + C++CG T +W G C C T++ A + Q +W +
Sbjct: 2 AKTLKTLYQCTECGGTSPKWQGKCPHCGEWNTLQESLAAPEPKNARFQ-SWAADTSTVQS 60
Query: 167 VQPVRLLEVNK---GMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTL 223
+ V EV + GM +LD RVLGGGLV G+++L+GGDPG+GKSTL
Sbjct: 61 LSAVTAAEVPRNPTGMSELD--------------RVLGGGLVDGAVILLGGDPGIGKSTL 106
Query: 224 LLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEK 283
LLQ A +A + V+YVSGEES +Q+ RA R+ + TE + L + +E I
Sbjct: 107 LLQTIAKMA------QSRKVLYVSGEESAQQVALRAQRLELPTEGVNLLAEIRMEAIQTA 160
Query: 284 VQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSG 343
++ P ++IDSIQT+Y + + G + QV+EC + L R AK+ I ++L GHVTK G
Sbjct: 161 LKQHQPEVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRMAKQMGIAMILVGHVTKDG 220
Query: 344 DIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSK 403
IAGPRVLEH+VD VLY EG++ S+YR++R++KNRFG+ +ELGVF M++ GL+ VSNPS
Sbjct: 221 AIAGPRVLEHMVDTVLYFEGDQHSNYRMIRAIKNRFGAANELGVFAMTENGLKGVSNPSA 280
Query: 404 IFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMII 461
IFL+ D+ G V V +GSR L+EIQAL G T R G++ +R M++
Sbjct: 281 IFLASYRDDT---PGSCVLVTQEGSRPLLVEIQALVDDAHGFTPKRLTVGLEQNRLAMLL 337
Query: 462 SVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGL 521
+VL + G+ + +FLN V GV + E A DLAV A+ SSF P+P + GEIGL
Sbjct: 338 AVLNRHGGIACFDQDVFLNAVGGVKIGEPAADLAVILAMLSSFRNRPLPEKMVAFGEIGL 397
Query: 522 GGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINV 578
GE+R V+R ++R+ KLG+++ IVPK A F ++ G +L+E I++
Sbjct: 398 SGEVRPVARGQERLKEAEKLGFKRAIVPK-ANMPRNVKEFPNLKIYGVSSLQEAIDI 453
>gi|416183822|ref|ZP_11612728.1| DNA repair protein RadA [Neisseria meningitidis M13399]
gi|325133704|gb|EGC56360.1| DNA repair protein RadA [Neisseria meningitidis M13399]
gi|389606131|emb|CCA45044.1| DNA repair protein radA homolog DNA repair protein sms homolog
[Neisseria meningitidis alpha522]
Length = 459
Score = 335 bits (858), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 193/476 (40%), Positives = 280/476 (58%), Gaps = 32/476 (6%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKP--EEV 167
K +T + C++CG T +W G C C T++ A + Q +W + +
Sbjct: 3 KTLKTLYQCTECGGTSPKWQGKCPHCGEWNTLQESLAAPEPKNARFQ-SWAADTSTVQSL 61
Query: 168 QPVRLLEVNK---GMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLL 224
V EV + GM +LD RVLGGGLV G+++L+GGDPG+GKSTLL
Sbjct: 62 SAVTATEVPRNPTGMGELD--------------RVLGGGLVDGAVILLGGDPGIGKSTLL 107
Query: 225 LQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKV 284
LQ A +A + V+YVSGEES +Q+ RA R+ + TE + L + +E I +
Sbjct: 108 LQTIAKMA------QSRKVLYVSGEESAQQVALRAQRLELPTEGVNLLAEIRMEAIQTAL 161
Query: 285 QPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGD 344
+ P ++IDSIQT+Y + + G + QV+EC + L R AK+ I ++L GHVTK G
Sbjct: 162 KQHQPEVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRMAKQMGIAMILVGHVTKDGA 221
Query: 345 IAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKI 404
IAGPRVLEH+VD VLY EG++ S+YR++R++KNRFG+ +ELGVF M++ GL+ VSNPS I
Sbjct: 222 IAGPRVLEHMVDTVLYFEGDQHSNYRMIRAIKNRFGAANELGVFAMTENGLKGVSNPSAI 281
Query: 405 FLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIIS 462
FL+ D+ G V V +GSR L+EIQAL G T R G++ +R M+++
Sbjct: 282 FLASYRDDT---PGSCVLVTQEGSRPLLVEIQALVDDAHGFTPKRLTVGLEQNRLAMLLA 338
Query: 463 VLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLG 522
VL + G+ + +FLN V GV + E A DLAV A+ SSF P+P + GEIGL
Sbjct: 339 VLNRHGGIACFDQDVFLNAVGGVKIGEPAADLAVILAMLSSFRNRPLPEKMVAFGEIGLS 398
Query: 523 GELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINV 578
GE+R V+R ++R+ KLG+++ IVPK+ A F ++ G +L+E I++
Sbjct: 399 GEVRPVARGQERLKEAEKLGFKRAIVPKANMPRNAK-EFPNLKIYGVSSLQEAIDI 453
>gi|336437635|ref|ZP_08617339.1| DNA repair protein RadA [Lachnospiraceae bacterium 1_4_56FAA]
gi|336004938|gb|EGN34991.1| DNA repair protein RadA [Lachnospiraceae bacterium 1_4_56FAA]
Length = 451
Score = 335 bits (858), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 198/475 (41%), Positives = 280/475 (58%), Gaps = 31/475 (6%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTM--KRYSAGESDEGPVVQRTWLPQKPEEV 167
K +T + C +CG+ + +W G C AC+ T ++ A G R E+
Sbjct: 3 KGKKTVYFCQNCGHEETKWLGQCPACKEWNTFVEEKVIASSVTSGIKTDR--------EI 54
Query: 168 QPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQM 227
Q V L EVN D +G+ E+ RVLGGG+VPGSLVL+GGDPG+GKSTLLLQ+
Sbjct: 55 QIVSLSEVNAD----DQDRITTGMA--ELDRVLGGGIVPGSLVLVGGDPGIGKSTLLLQV 108
Query: 228 AAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPL 287
L E V+Y+SGEES+ QI RA+RM E L L T++ I ++
Sbjct: 109 C------QKLSENRSVLYISGEESLSQIKLRANRMGTFQENLKLLCETNLAAIRSVIEKR 162
Query: 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAG 347
P +IIDSIQT+Y V + G + QV+E T+ ++ AK I + + GHVTK G +AG
Sbjct: 163 KPELVIIDSIQTMYSEEVTSAPGSVSQVRESTNVFMQLAKGLGITIFIVGHVTKEGTVAG 222
Query: 348 PRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLS 407
PRVLEH+VD VLY EG++ +SYR+LR VKNRFGST+E+GVFEM Q GL V NPS+ LS
Sbjct: 223 PRVLEHMVDTVLYFEGDRHASYRILRGVKNRFGSTNEIGVFEMRQNGLVEVENPSEYMLS 282
Query: 408 EQHSDSEFLAGLAVAVIMDGSRSFLIEIQAL-CVSGSTVSRHV-NGIQASRADMIISVLM 465
+ ++ +G VA M+G+R LIEIQAL C S + R G +R +++++VL
Sbjct: 283 GKPENA---SGSVVACSMEGTRPLLIEIQALVCESNFGMPRRTATGTDYNRVNLLMAVLE 339
Query: 466 KQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGEL 525
K+ GL L ++N+ G+ + E A DL + +I SS+ PI + GE+GL GE+
Sbjct: 340 KRIGLHLGNCDAYVNIAGGIRMNEPAIDLGIVMSIVSSYKNRPIDEKMIVFGEVGLSGEV 399
Query: 526 RMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATL-GFEQMEFIGCKNLKEVINVV 579
R V+ E+RV+ KLG+ C+VP E SL + G ++ IG KN+ + +N++
Sbjct: 400 RAVNMPEQRVAEAKKLGFETCVVP---EVSLDMVKGIRGIKVIGVKNISDAMNLI 451
>gi|385337734|ref|YP_005891607.1| DNA repair protein RadA (DNA repair protein Sms) [Neisseria
meningitidis WUE 2594]
gi|433475392|ref|ZP_20432733.1| DNA repair protein RadA [Neisseria meningitidis 88050]
gi|433515252|ref|ZP_20472024.1| DNA repair protein RadA [Neisseria meningitidis 2004090]
gi|433517288|ref|ZP_20474037.1| DNA repair protein RadA [Neisseria meningitidis 96023]
gi|433523748|ref|ZP_20480413.1| DNA repair protein RadA [Neisseria meningitidis 97020]
gi|433527897|ref|ZP_20484508.1| DNA repair protein RadA [Neisseria meningitidis NM3652]
gi|433530071|ref|ZP_20486664.1| DNA repair protein RadA [Neisseria meningitidis NM3642]
gi|433532329|ref|ZP_20488895.1| DNA repair protein RadA [Neisseria meningitidis 2007056]
gi|433534079|ref|ZP_20490624.1| DNA repair protein RadA [Neisseria meningitidis 2001212]
gi|319410148|emb|CBY90484.1| DNA repair protein RadA (DNA repair protein Sms) [Neisseria
meningitidis WUE 2594]
gi|432211210|gb|ELK67165.1| DNA repair protein RadA [Neisseria meningitidis 88050]
gi|432253840|gb|ELL09176.1| DNA repair protein RadA [Neisseria meningitidis 2004090]
gi|432254297|gb|ELL09632.1| DNA repair protein RadA [Neisseria meningitidis 96023]
gi|432260647|gb|ELL15905.1| DNA repair protein RadA [Neisseria meningitidis 97020]
gi|432266204|gb|ELL21392.1| DNA repair protein RadA [Neisseria meningitidis NM3652]
gi|432267999|gb|ELL23171.1| DNA repair protein RadA [Neisseria meningitidis NM3642]
gi|432268274|gb|ELL23445.1| DNA repair protein RadA [Neisseria meningitidis 2007056]
gi|432272589|gb|ELL27696.1| DNA repair protein RadA [Neisseria meningitidis 2001212]
Length = 459
Score = 335 bits (858), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 193/477 (40%), Positives = 279/477 (58%), Gaps = 32/477 (6%)
Query: 109 GKANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKP--EE 166
K +T + C++CG T +W G C C T++ A + Q +W +
Sbjct: 2 AKTLKTLYQCTECGGTSPKWQGKCPHCGEWNTLQESLAAPEPKNSRFQ-SWAADTSTVQS 60
Query: 167 VQPVRLLEVNK---GMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTL 223
+ V EV + GM +LD RVLGGGLV G+++L+GGDPG+GKSTL
Sbjct: 61 LSAVTAAEVPRNPTGMSELD--------------RVLGGGLVDGAVILLGGDPGIGKSTL 106
Query: 224 LLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEK 283
LLQ A +A + V+YVSGEES +Q+ RA R+ + TE + L + +E I
Sbjct: 107 LLQTIAKMA------QSRKVLYVSGEESAQQVALRAQRLELPTEGVNLLAEIRMEAIQTA 160
Query: 284 VQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSG 343
++ P ++IDSIQT+Y + + G + QV+EC + L R AK+ I ++L GHVTK G
Sbjct: 161 LKQHQPEVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRMAKQMGIAMILVGHVTKDG 220
Query: 344 DIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSK 403
IAGPRVLEH+VD VLY EG++ S+YR++R++KNRFG+ +ELGVF M++ GL+ VSNPS
Sbjct: 221 AIAGPRVLEHMVDTVLYFEGDQHSNYRMIRAIKNRFGAANELGVFAMTENGLKGVSNPSA 280
Query: 404 IFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMII 461
IFL+ D+ G V V +GSR L+EIQAL G T R G++ +R M++
Sbjct: 281 IFLASYRDDT---PGSCVLVTQEGSRPLLVEIQALVDDAHGFTPKRLTVGLEQNRLAMLL 337
Query: 462 SVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGL 521
+VL + G+ + +FLN V GV + E A DLAV A+ SSF P+P + GEIGL
Sbjct: 338 AVLNRHGGIACFDQDVFLNAVGGVKIGEPAADLAVILAMLSSFRNRPLPEKMVAFGEIGL 397
Query: 522 GGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINV 578
GE+R V+R ++R+ KLG+++ IVPK A F ++ G +L+E I++
Sbjct: 398 SGEVRPVARGQERLKEAEKLGFKRAIVPK-ANMPRNVKEFPNLKIYGVSSLQEAIDI 453
>gi|218290043|ref|ZP_03494210.1| DNA repair protein RadA [Alicyclobacillus acidocaldarius LAA1]
gi|218239877|gb|EED07065.1| DNA repair protein RadA [Alicyclobacillus acidocaldarius LAA1]
Length = 448
Score = 335 bits (858), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 186/470 (39%), Positives = 277/470 (58%), Gaps = 28/470 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T +VC CG+ + +W G C AC T+ S + +P+ +
Sbjct: 5 KTQYVCQMCGHVEVKWMGRCPACGEWNTLVEEEVSPSGRFTPSRARVVPKPIVSIPAQAE 64
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
++ G+ + D+ VLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ +A
Sbjct: 65 NRLSTGLSECDF--------------VLGGGVVPGSLVLIGGDPGIGKSTLLLQVSHAMA 110
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
V+Y+SGEES QI RA+R+ EL++ + TD++ +E L P+ L
Sbjct: 111 K-----NGHRVLYISGEESATQIRLRAERLGTVHSELYVLAETDLDAALEAAVDLKPQFL 165
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
I+DSIQTV+ G+ + G + QV+ECT LLR AK ++ + GHVTK G IAGPR+LE
Sbjct: 166 IVDSIQTVFRPGLTSAPGSVAQVRECTGLLLRVAKAESMATFIVGHVTKDGAIAGPRMLE 225
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VDAVLY EG++ YR+LR+VKNRFGST+EL VFEM GL+ ++NPS++FLSE+
Sbjct: 226 HMVDAVLYFEGDRHHMYRVLRAVKNRFGSTNELAVFEMRDDGLREIANPSELFLSERRG- 284
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMKQAGL 470
G AV M+G R L+E+QAL S S T R G R +M+++VL ++ G+
Sbjct: 285 --IAPGSAVVCAMEGRRPLLLEVQALVASTSFGTPRRMTTGADLQRMNMLLAVLERRLGM 342
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
+L ++N+ GV + E A DL +A A+ +S + P+ G+ +IGE+GL E+R V+R
Sbjct: 343 QLGSCDAYVNIAGGVRVEEPAADLGIALALVASHRDRPLRQGV-YIGEVGLTAEVRAVTR 401
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+ +R+ KLG+ +C+VP A G ME + +++++ I+ F
Sbjct: 402 LSERIREARKLGFHRCMVPAGQSVPEAVPG---MEIVQVRSVQDAIDQAF 448
>gi|238916636|ref|YP_002930153.1| DNA repair protein RadA [Eubacterium eligens ATCC 27750]
gi|238871996|gb|ACR71706.1| methylated-DNA-[protein]-cysteine S-methyltransferase [Eubacterium
eligens ATCC 27750]
Length = 459
Score = 334 bits (857), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 193/481 (40%), Positives = 289/481 (60%), Gaps = 35/481 (7%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTM--KRYSAGESDEG--PVVQRTWLPQKPE 165
KA T + C +CGY +W+G C AC+ T + S +S +G QR P
Sbjct: 3 KAKNTAFFCKECGYESAKWFGQCPACKEWNTFVEEPVSKPKSAKGIAGTSQRAAASSAPV 62
Query: 166 --EVQPVRLLEVNK---GMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGK 220
E+ V E ++ G+ +LD RVLGGG+V GSLVL+GGDPG+GK
Sbjct: 63 PVEINSVSFEENDRTSTGIAELD--------------RVLGGGIVAGSLVLVGGDPGIGK 108
Query: 221 STLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDI 280
STLLLQM ++ E V+Y+SGEES++QI RADR+ + L L T ++ I
Sbjct: 109 STLLLQMCYNLS-----AEGKDVLYISGEESLKQIKLRADRIGKCSGTLKLLCETSLDSI 163
Query: 281 VEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVT 340
+ + P +IIDSIQT+Y VA + G + QV+E TS L++ AK NI + + GHVT
Sbjct: 164 EDILTRNKPEIVIIDSIQTMYKEDVAAAPGSVSQVRETTSILMQLAKGLNITIFIVGHVT 223
Query: 341 KSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSN 400
K G +AGPR+LEH+VD VLY EG++++SYR+LR VKNRFGST+E+GVFEM Q GL V N
Sbjct: 224 KEGTVAGPRMLEHMVDTVLYFEGDRYASYRILRGVKNRFGSTNEIGVFEMQQSGLSEVEN 283
Query: 401 PSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQAL-CVSGSTVSRHV-NGIQASRAD 458
PS+ L+ + ++ +G V +++G+R ++EIQAL C S ++R G +R +
Sbjct: 284 PSEYMLNGRPENA---SGSVVVCLLEGTRPIMVEIQALVCDSNFGMARRTAAGTDYNRVN 340
Query: 459 MIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGE 518
++++VL K+AG+ + + ++NV G+ ++E A DL + A+ SSF I GE
Sbjct: 341 LLMAVLEKRAGIHMSGSDAYVNVAGGIKVSEPALDLGIVMALVSSFKNKAIDEKTVIFGE 400
Query: 519 IGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINV 578
+GL GE+R VS+ ++RV+ KLG++ CI+P K++ +++E IG N++E I +
Sbjct: 401 VGLAGEVRAVSQAQQRVNEAVKLGFKTCILPGVCLKNIKK--NDKIEIIGVNNVQEAIKL 458
Query: 579 V 579
+
Sbjct: 459 I 459
>gi|331092133|ref|ZP_08340963.1| DNA repair protein RadA [Lachnospiraceae bacterium 2_1_46FAA]
gi|330401905|gb|EGG81479.1| DNA repair protein RadA [Lachnospiraceae bacterium 2_1_46FAA]
Length = 450
Score = 334 bits (857), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 197/479 (41%), Positives = 282/479 (58%), Gaps = 40/479 (8%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTM--KRYSAGES-----DEGPVVQRTWLPQ 162
K ++ + C +CG+ + +W G C C+ T + S G S VV + +
Sbjct: 3 KGKKSVFFCQNCGHEEKKWLGQCPMCKEWNTFVEETISDGVSFSKTVSRAEVVTLSSVKT 62
Query: 163 KPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKST 222
EE G+++LD RVLGGG+VPGSL+L+GGDPG+GKST
Sbjct: 63 DSEE-------RTKTGIEELD--------------RVLGGGIVPGSLILVGGDPGIGKST 101
Query: 223 LLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVE 282
LLLQ+ ++ E V+Y+SGEES++QI RA RM T+EL L T + I
Sbjct: 102 LLLQVCQKLSQ-----EKHQVLYISGEESLKQIKLRAMRMGEFTDELSLLCETSLNTIRG 156
Query: 283 KVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKS 342
++ P +IIDSIQT+Y V + G + QV+E T+ L++ AK NI + + GHVTK
Sbjct: 157 VIERRKPEIVIIDSIQTMYSEDVTSAPGSVSQVRESTNVLMQLAKGLNISIFIVGHVTKE 216
Query: 343 GDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPS 402
G +AGPRVLEH+VD VLY EG++ +SYR+LR VKNRFGST+E+GVFEM Q GLQ V NPS
Sbjct: 217 GTVAGPRVLEHMVDTVLYFEGDRHASYRILRGVKNRFGSTNEIGVFEMRQSGLQEVKNPS 276
Query: 403 KIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQAL-CVSGSTVSRHV-NGIQASRADMI 460
+ L + E +G VA M+G+R L+EIQAL C SG + R G +R +++
Sbjct: 277 EFML---NGKPEGASGSVVACSMEGTRPILLEIQALVCQSGFGMPRRTAAGTDYNRVNLL 333
Query: 461 ISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIG 520
++VL K+ GL L ++N+ G+ + E A DL + AI SS+ PI + + GE+G
Sbjct: 334 MAVLEKRIGLPLFNYDAYVNIAGGIKMNEPAIDLGIILAIVSSYKNKPIGDKVIAFGEVG 393
Query: 521 LGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVV 579
L GE+R VS E+RVS KLG++ CIVP+ + +++ + + +E +G KN+ E I V
Sbjct: 394 LSGEVRAVSMPEQRVSEAKKLGFQTCIVPEVSVETVKNI--KGIEIVGVKNISEAIQFV 450
>gi|160934240|ref|ZP_02081627.1| hypothetical protein CLOLEP_03111 [Clostridium leptum DSM 753]
gi|156866913|gb|EDO60285.1| DNA repair protein RadA [Clostridium leptum DSM 753]
Length = 427
Score = 334 bits (857), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 178/383 (46%), Positives = 259/383 (67%), Gaps = 13/383 (3%)
Query: 195 EVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQ 254
E+ RVLGGG+V GSLVL+GGDPG+GKST+LLQ+ +LG+ ++YVSGEES Q
Sbjct: 48 ELDRVLGGGIVKGSLVLLGGDPGIGKSTILLQVC------QELGKTLKILYVSGEESKRQ 101
Query: 255 IGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQ 314
+ RA R+ + ++ L++ + TD+E I+E ++ P +IIDSIQT+ L ++ S G + Q
Sbjct: 102 LKLRATRLGVNSDHLYILTETDVEYIIEAIRSEKPDLVIIDSIQTMSLGDLSSSPGSITQ 161
Query: 315 VKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRS 374
V+ECT+A +R AK +IP+L+ GHV K G IAGP+VLEHIVDAVLY EG++ SYR+LR+
Sbjct: 162 VRECTNAFMRTAKSLDIPILVVGHVNKDGAIAGPKVLEHIVDAVLYFEGDRQMSYRILRA 221
Query: 375 VKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIE 434
VKNR+GST+E+GVFEM++ GL+ V NPS + LS + + ++G VA +M+G+R L E
Sbjct: 222 VKNRYGSTNEIGVFEMAENGLREVENPSMMLLSGRPKN---VSGTCVACVMEGTRPILAE 278
Query: 435 IQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAG 492
+Q L S R G +R ++++VL K+AG +LNVV G+ L E A
Sbjct: 279 VQGLATSSGFGNPRRMSTGFDYNRMSLLLAVLEKRAGYFFSNLDAYLNVVGGLRLDEPAA 338
Query: 493 DLAVAAAICSSFLEFPIP-NGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKS 551
DLAVA A+ SS + P+ N +AF GEIGL GE+R V+ + RV+ ++LG+++C++P
Sbjct: 339 DLAVAMALVSSLKDVPVSENALAF-GEIGLAGEIRSVNHAQARVNEASRLGFQRCVLPYH 397
Query: 552 AEKSLATLGFEQMEFIGCKNLKE 574
KSL+ G +E IG K+++E
Sbjct: 398 NLKSLSDSGRLGLELIGVKSVRE 420
>gi|149369641|ref|ZP_01889493.1| DNA repair protein [unidentified eubacterium SCB49]
gi|149357068|gb|EDM45623.1| DNA repair protein [unidentified eubacterium SCB49]
Length = 458
Score = 334 bits (857), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 183/453 (40%), Positives = 280/453 (61%), Gaps = 42/453 (9%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQR----TW--------L 160
+T++ C +CG + +W G C +C+ T+ V+Q+ TW +
Sbjct: 5 KTSFFCQNCGASFAKWQGQCTSCKEWNTIAE---------EVIQKAEKVTWEVGEAKKAV 55
Query: 161 PQKPEEVQPVRLLEVNKGMK-QLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVG 219
+ +P+R+ E+N + ++D L+G E+ RVLGGGLVPGSL L+GG+PG+G
Sbjct: 56 SGRSRVAKPLRVSEINTTAEARMD---TLNG----ELNRVLGGGLVPGSLTLLGGEPGIG 108
Query: 220 KSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIED 279
KSTL+LQ+A L P +YVSGEES QI RA+R+ +E ++ + T ++
Sbjct: 109 KSTLMLQIA--------LQLPYKTLYVSGEESASQIKMRAERIHPESENCYILTETKTQN 160
Query: 280 IVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHV 339
I + + P ++IDSIQT++ + SAG + Q++E T+ L++FAK+T PV+L GH+
Sbjct: 161 IFRNIAEMEPDIVVIDSIQTLHTDYIESSAGSISQIRETTTELIKFAKETATPVILIGHI 220
Query: 340 TKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVS 399
TK G+IAGP++LEH+VD VL EG++ YR+LR+ KNRFGST+ELG++EM GL+ VS
Sbjct: 221 TKDGNIAGPKILEHMVDTVLQFEGDRNHIYRILRANKNRFGSTNELGIYEMQGSGLREVS 280
Query: 400 NPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRA 457
NPS+I +S+ + E L+G A++ ++G R +IEIQAL + T R G A R
Sbjct: 281 NPSEILISK---NEEELSGTAISATLEGMRPLMIEIQALVSTAVYGTPQRSATGYNAKRL 337
Query: 458 DMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIG 517
+MI++VL K+AG KL +FLNV G+++ + A DLAV AA+ SS ++ I + F
Sbjct: 338 NMILAVLEKRAGFKLGAKDVFLNVTGGLSVDDPAIDLAVVAAVLSSNVDIVIDKRMCFAA 397
Query: 518 EIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPK 550
E+GL GE+R V+R+++R+ KLG+ I+ K
Sbjct: 398 EVGLAGEVRPVTRVDQRILEAEKLGFETIIISK 430
>gi|421537734|ref|ZP_15983917.1| DNA repair protein RadA [Neisseria meningitidis 93003]
gi|402318401|gb|EJU53924.1| DNA repair protein RadA [Neisseria meningitidis 93003]
Length = 459
Score = 334 bits (857), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 193/476 (40%), Positives = 280/476 (58%), Gaps = 32/476 (6%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKP--EEV 167
K +T + C++CG T +W G C C T++ A + Q +W + +
Sbjct: 3 KTLKTLYQCTECGGTSPKWQGKCPHCGEWNTLQESLAAPEPKNARFQ-SWAADTSTVQSL 61
Query: 168 QPVRLLEVNK---GMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLL 224
V EV + GM +LD RVLGGGLV G+++L+GGDPG+GKSTLL
Sbjct: 62 STVTATEVPRNPTGMGELD--------------RVLGGGLVDGAVILLGGDPGIGKSTLL 107
Query: 225 LQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKV 284
LQ A +A + V+YVSGEES +Q+ RA R+ + TE + L + +E I +
Sbjct: 108 LQTIAKMA------QSRKVLYVSGEESAQQVALRAQRLELPTEGVNLLAEIRMEAIQAAL 161
Query: 285 QPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGD 344
+ P ++IDSIQT+Y + + G + QV+EC + L R AK+ I ++L GHVTK G
Sbjct: 162 KQHQPEVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRMAKQMGIAMILVGHVTKDGA 221
Query: 345 IAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKI 404
IAGPRVLEH+VD VLY EG++ S+YR++R++KNRFG+ +ELGVF M++ GL+ VSNPS I
Sbjct: 222 IAGPRVLEHMVDTVLYFEGDQHSNYRMIRAIKNRFGAANELGVFAMTENGLKGVSNPSAI 281
Query: 405 FLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIIS 462
FL+ D+ G V V +GSR L+EIQAL G T R G++ +R M+++
Sbjct: 282 FLASYRDDT---PGSCVLVTQEGSRPLLVEIQALVDDAHGFTPKRLTVGLEQNRLAMLLA 338
Query: 463 VLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLG 522
VL + G+ + +FLN V GV + E A DLAV A+ SSF P+P + GEIGL
Sbjct: 339 VLNRHGGIACFDQDVFLNAVGGVKIGEPAADLAVILAMLSSFRNRPLPEKMVAFGEIGLS 398
Query: 523 GELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINV 578
GE+R V+R ++R+ KLG+++ IVPK+ A F ++ G +L+E I++
Sbjct: 399 GEVRPVARGQERLKEAEKLGFKRAIVPKANMPRNAK-EFPNLKIYGVSSLQEAIDI 453
>gi|322515958|ref|ZP_08068899.1| DNA repair protein RadA [Streptococcus vestibularis ATCC 49124]
gi|322125632|gb|EFX96962.1| DNA repair protein RadA [Streptococcus vestibularis ATCC 49124]
Length = 415
Score = 334 bits (857), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 182/390 (46%), Positives = 252/390 (64%), Gaps = 13/390 (3%)
Query: 194 NEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVE 253
+E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ +A+ V+YVSGEES E
Sbjct: 37 DEFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLAN------KGTVLYVSGEESAE 90
Query: 254 QIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLM 313
QI R++R+ E +LY+ T+++ + +V+ + P LIIDSIQT+ ++G G +
Sbjct: 91 QIKLRSERLGDIDNEFYLYAETNMQAVRSQVEAIKPDFLIIDSIQTIMSPEISGVQGSVS 150
Query: 314 QVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLR 373
QV+E T+ L++ AK NI + GHVTK G +AGPR+LEH+VD VLY EGE+ ++R+LR
Sbjct: 151 QVREVTAELMQIAKTNNIATFIVGHVTKEGQLAGPRMLEHMVDTVLYFEGERHHTFRILR 210
Query: 374 SVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLI 433
+VKNRFGST+E+G+FEM GL V NPS++FL E+ + G A+ V M+GSR L
Sbjct: 211 AVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGA---TGSAIVVTMEGSRPILA 267
Query: 434 EIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETA 491
E+QAL R G+ +R +I++VL K+ GL LQ +L GV L E A
Sbjct: 268 EVQALVTPTVFGNAKRTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPA 327
Query: 492 GDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKS 551
DLAVA AI SS+ E P AFIGEIGL GE+R V+R+E+R++ AKLG+ K PK+
Sbjct: 328 IDLAVAVAISSSYKELPTNPQEAFIGEIGLTGEIRRVTRIEQRINEAAKLGFTKIYAPKN 387
Query: 552 AEKSLATLGFEQMEFIGCKNLKEVINVVFT 581
+ + E ++ IG + EV+ VF+
Sbjct: 388 SLHGMKIP--EGIQVIGVTTVGEVLKKVFS 415
>gi|298368762|ref|ZP_06980080.1| DNA repair protein RadA [Neisseria sp. oral taxon 014 str. F0314]
gi|298282765|gb|EFI24252.1| DNA repair protein RadA [Neisseria sp. oral taxon 014 str. F0314]
Length = 459
Score = 334 bits (857), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 193/476 (40%), Positives = 279/476 (58%), Gaps = 32/476 (6%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKP--EEV 167
KA +T + C++CG T +W G C C T++ A + Q +W + +
Sbjct: 3 KAPKTIYQCTECGGTSPKWQGKCPHCGEWNTLQESLAAPEPKNARFQ-SWAADTSTVQSL 61
Query: 168 QPVRLLEVNK---GMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLL 224
V EV + GM +LD RVLG GLV G+++L+GGDPG+GKSTLL
Sbjct: 62 SAVTATEVPRNPTGMGELD--------------RVLGDGLVDGAVILLGGDPGIGKSTLL 107
Query: 225 LQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKV 284
LQ A +A + V+YVSGEES +Q+ RA R+ + TE + L + +E I +
Sbjct: 108 LQTIAKMA------QSRKVLYVSGEESAQQVALRAQRLELPTEGVNLLAEIRMEAIQAAL 161
Query: 285 QPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGD 344
+ P ++IDSIQT+Y + + G + QV+EC + L R AK+ I ++L GHVTK G
Sbjct: 162 KQHQPEVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRMAKQMGIAMILVGHVTKDGA 221
Query: 345 IAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKI 404
IAGPRVLEH+VD VLY EG++ S+YR++R++KNRFG+ +ELGVF M++ GL+ VSNPS I
Sbjct: 222 IAGPRVLEHMVDTVLYFEGDQHSNYRMIRAIKNRFGAANELGVFAMTENGLKGVSNPSAI 281
Query: 405 FLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIIS 462
FL+ D+ G V V +GSR L+EIQAL G T R G++ +R M+++
Sbjct: 282 FLASYRDDT---PGSCVLVTQEGSRPLLVEIQALVDDAHGFTPKRLTVGLEQNRLAMLLA 338
Query: 463 VLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLG 522
VL + G+ + +FLN V GV + E A DLAV A+ SSF P+P + GEIGL
Sbjct: 339 VLNRHGGIACFDQDVFLNAVGGVKIGEPAADLAVILAMLSSFRNRPLPEKMVAFGEIGLS 398
Query: 523 GELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINV 578
GE+R V+R ++R+ KLG+++ IVPK A F +E G +L+E +++
Sbjct: 399 GEVRPVARGQERLKEAEKLGFKRAIVPK-ANMPRNPKEFPNLEIFGIGSLQEAVDI 453
>gi|254672846|emb|CBA07050.1| DNA repair protein [Neisseria meningitidis alpha275]
Length = 459
Score = 334 bits (857), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 193/476 (40%), Positives = 280/476 (58%), Gaps = 32/476 (6%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKP--EEV 167
K +T + C++CG T +W G C C T++ A + Q +W + +
Sbjct: 3 KTLKTLYQCTECGGTSPKWQGKCPHCGEWNTLQESLAAPEPKNARFQ-SWAADTSTVQSL 61
Query: 168 QPVRLLEVNK---GMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLL 224
V EV + GM +LD RVLGGGLV G+++L+GGDPG+GKSTLL
Sbjct: 62 SSVTATEVPRNPTGMGELD--------------RVLGGGLVDGAVILLGGDPGIGKSTLL 107
Query: 225 LQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKV 284
LQ A +A + V+YVSGEES +Q+ RA R+ + TE + L + +E I +
Sbjct: 108 LQTIAKMA------QSRKVLYVSGEESAQQVALRAQRLELPTEGVNLLAEIRMEAIQTAL 161
Query: 285 QPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGD 344
+ P ++IDSIQT+Y + + G + QV+EC + L R AK+ I ++L GHVTK G
Sbjct: 162 KQHQPEVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRMAKQMGIAMILVGHVTKDGA 221
Query: 345 IAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKI 404
IAGPRVLEH+VD VLY EG++ S+YR++R++KNRFG+ +ELGVF M++ GL+ VSNPS I
Sbjct: 222 IAGPRVLEHMVDTVLYFEGDQHSNYRMIRAIKNRFGAANELGVFAMTENGLKGVSNPSAI 281
Query: 405 FLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIIS 462
FL+ D+ G V V +GSR L+EIQAL G T R G++ +R M+++
Sbjct: 282 FLASYRDDT---PGSCVLVTQEGSRPLLVEIQALVDDAHGFTPKRLTVGLEQNRLAMLLA 338
Query: 463 VLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLG 522
VL + G+ + +FLN V GV + E A DLAV A+ SSF P+P + GEIGL
Sbjct: 339 VLNRHGGIACFDQDVFLNAVGGVKIGEPAADLAVILAMLSSFRNRPLPEKMVAFGEIGLS 398
Query: 523 GELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINV 578
GE+R V+R ++R+ KLG+++ IVPK+ A F ++ G +L+E I++
Sbjct: 399 GEVRPVARGQERLKEAEKLGFKRAIVPKANMPRNAK-EFPNLKIYGVSSLQEAIDI 453
>gi|225012383|ref|ZP_03702819.1| DNA repair protein RadA [Flavobacteria bacterium MS024-2A]
gi|225003360|gb|EEG41334.1| DNA repair protein RadA [Flavobacteria bacterium MS024-2A]
Length = 450
Score = 334 bits (857), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 178/467 (38%), Positives = 277/467 (59%), Gaps = 25/467 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEV-QPVR 171
+ + C +CG QW G C C+ T+ E P + W + +E+ P+R
Sbjct: 5 KKAFFCQNCGSQHTQWQGQCNTCKEWNTLVEEII--EKEAP---KEWASESTKEITSPIR 59
Query: 172 LLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAII 231
+ ++ +P E+ RVLGGGLVPGS++L+GG+PG+GKSTLLLQ++
Sbjct: 60 MDAIDVA------EVPRIKTQDEELNRVLGGGLVPGSVILLGGEPGIGKSTLLLQVS--- 110
Query: 232 ADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRA 291
L S V+YVSGEES +QI RADRM + ++ F+ S T+ + I +++Q + P
Sbjct: 111 -----LSLNSTVLYVSGEESQQQIKLRADRMELDGKKCFVLSQTETQKIFQQIQKVKPDL 165
Query: 292 LIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVL 351
+I+DSIQT++ + AG + Q++ L++FAK TN PV+L GH+TK G+IAGP++L
Sbjct: 166 VIVDSIQTLHSNYIESGAGSVSQIRATAGELIQFAKSTNTPVILVGHITKDGNIAGPKIL 225
Query: 352 EHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHS 411
EH+VD VL EG++ YR+LR+ KNRFG+T E+G++EM GL+ V+NPS++ +SE+
Sbjct: 226 EHMVDTVLQFEGDRNHLYRILRAQKNRFGATSEIGIYEMISQGLRQVTNPSEVLISEKE- 284
Query: 412 DSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAG 469
+ L+G A+A ++G R +IE+QAL + T R G A R +M+++VL K+AG
Sbjct: 285 --DALSGHAIAATVEGIRPLMIEVQALVSTAVYGTPQRSSTGFNAKRLNMLLAVLEKRAG 342
Query: 470 LKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVS 529
L +F+N+ G+ + + A D+AV AA+ SS+ + PI I F EIGL GE+R V+
Sbjct: 343 FALGSKDVFINITGGINIEDPALDMAVVAALLSSYHDIPIAQNICFAAEIGLSGEIRPVA 402
Query: 530 RMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVI 576
+ E R+ K+GY + K ++ + + F +NL E +
Sbjct: 403 KAEIRIQEAEKIGYENIAISKFSKLGVTPKSIQIHAFSKVENLVEFL 449
>gi|161869728|ref|YP_001598895.1| DNA repair protein RadA [Neisseria meningitidis 053442]
gi|161595281|gb|ABX72941.1| DNA repair protein [Neisseria meningitidis 053442]
Length = 459
Score = 334 bits (857), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 193/476 (40%), Positives = 279/476 (58%), Gaps = 32/476 (6%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKP--EEV 167
K +T + C++CG T +W G C C T++ A + Q +W + +
Sbjct: 3 KTLKTLYQCTECGGTSPKWQGKCPHCGEWNTLQESLAAPEPKNARFQ-SWAADTSTVQSL 61
Query: 168 QPVRLLEVNK---GMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLL 224
V EV + GM +LD RVLGGGLV G+++L+GGDPG+GKSTLL
Sbjct: 62 SAVTATEVPRNPTGMGELD--------------RVLGGGLVDGAVILLGGDPGIGKSTLL 107
Query: 225 LQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKV 284
LQ A +A + V+YVSGEES +Q+ RA R+ + TE + L + +E I +
Sbjct: 108 LQTIAKMA------QSRKVLYVSGEESAQQVALRAQRLELPTEGVNLLAEIRMEAIQTAL 161
Query: 285 QPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGD 344
+ P ++IDSIQT+Y + + G + QV+EC + L R AK+ I ++L GHVTK G
Sbjct: 162 KQHQPEVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRMAKQMGIAMILVGHVTKDGA 221
Query: 345 IAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKI 404
IAGPRVLEH+VD VLY EG++ S+YR++R++KNRFG+ +ELGVF M++ GL+ VSNPS I
Sbjct: 222 IAGPRVLEHMVDTVLYFEGDQHSNYRMIRAIKNRFGAANELGVFAMTENGLKGVSNPSAI 281
Query: 405 FLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIIS 462
FL+ D+ G V V +GSR L+EIQAL G T R G++ +R M+++
Sbjct: 282 FLASYRDDT---PGSCVLVTQEGSRPLLVEIQALVDDAHGFTPKRLTVGLEQNRLAMLLA 338
Query: 463 VLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLG 522
VL + G+ + +FLN V GV + E A DLAV A+ SSF P+P GEIGL
Sbjct: 339 VLNRHGGIACFDQDVFLNAVGGVKIGEPAADLAVILAMLSSFRNRPMPEKTVVFGEIGLS 398
Query: 523 GELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINV 578
GE+R V+R ++R+ KLG+++ IVPK+ A F ++ G +L+E I++
Sbjct: 399 GEVRPVARGQERLKEAEKLGFKRAIVPKANMPRNAK-EFPNLKIYGVSSLQEAIDI 453
>gi|385851553|ref|YP_005898068.1| DNA repair protein RadA [Neisseria meningitidis M04-240196]
gi|325206376|gb|ADZ01829.1| DNA repair protein RadA [Neisseria meningitidis M04-240196]
Length = 473
Score = 334 bits (857), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 193/476 (40%), Positives = 279/476 (58%), Gaps = 32/476 (6%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKP--EEV 167
K +T + C++CG T +W G C C T++ A + Q +W + +
Sbjct: 17 KTLKTLYQCTECGGTSPKWQGKCPHCGEWNTLQESLAAPEPKNARFQ-SWAADTSTVQSL 75
Query: 168 QPVRLLEVNK---GMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLL 224
V EV + GM +LD RVLGGGLV G+++L+GGDPG+GKSTLL
Sbjct: 76 SAVTATEVPRNPTGMGELD--------------RVLGGGLVDGAVILLGGDPGIGKSTLL 121
Query: 225 LQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKV 284
LQ A +A + V+YVSGEES +Q+ RA R+ + TE + L + +E I +
Sbjct: 122 LQTIAKMA------QSRKVLYVSGEESAQQVALRAQRLELPTEGVNLLAEIRMEAIQTAL 175
Query: 285 QPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGD 344
+ P ++IDSIQT+Y + + G + QV+EC + L R AK+ I ++L GHVTK G
Sbjct: 176 KQHQPEVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRMAKQMGIAMILVGHVTKDGA 235
Query: 345 IAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKI 404
IAGPRVLEH+VD VLY EG++ S+YR++R++KNRFG+ +ELGVF M++ GL+ VSNPS I
Sbjct: 236 IAGPRVLEHMVDTVLYFEGDQHSNYRMIRAIKNRFGAANELGVFAMTENGLKGVSNPSAI 295
Query: 405 FLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIIS 462
FL+ D+ G V V +GSR L+EIQAL G T R G++ +R M+++
Sbjct: 296 FLASYRDDT---PGSCVLVTQEGSRPLLVEIQALVDDAHGFTPKRLTVGLEQNRLAMLLA 352
Query: 463 VLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLG 522
VL + G+ + +FLN V GV + E A DLAV A+ SSF P+P GEIGL
Sbjct: 353 VLNRHGGIACFDQDVFLNAVGGVKIGEPAADLAVILAMLSSFRNRPMPEKTVVFGEIGLS 412
Query: 523 GELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINV 578
GE+R V+R ++R+ KLG+++ IVPK+ A F ++ G +L+E I++
Sbjct: 413 GEVRPVARGQERLKEAEKLGFKRAIVPKANMPRNAK-EFPNLKIYGVSSLQEAIDI 467
>gi|359405091|ref|ZP_09197883.1| DNA repair protein RadA [Prevotella stercorea DSM 18206]
gi|357559667|gb|EHJ41110.1| DNA repair protein RadA [Prevotella stercorea DSM 18206]
Length = 468
Score = 334 bits (857), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 186/461 (40%), Positives = 273/461 (59%), Gaps = 28/461 (6%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPE--EVQPV 170
+T +VCS+CG +W G C C T K G S G + + P+
Sbjct: 5 KTAYVCSNCGQESTKWIGKCPNCGEWNTFKEIRLGTSQLGSNADGLFRHSNATSGKSTPI 64
Query: 171 RLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAI 230
+L ++ Q D RI + E+ RVLGGGLV GS+VL+GG+PG+GKSTL LQ
Sbjct: 65 KLSDIPT---QDDPRIDM---HDGELNRVLGGGLVAGSIVLLGGEPGIGKSTLTLQTILN 118
Query: 231 IADVHDLGEPSPVVYVSGEESVEQIGNRADRMM--------IATEELFLYSSTDIEDIVE 282
I D ++YVSGEES Q+ RA+R++ + + + T ++ I E
Sbjct: 119 IPD-------RKILYVSGEESAHQLKMRAERLLGGMYNATTAIVDNINILCETSLQKIFE 171
Query: 283 KVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKS 342
L+P L+IDSIQT+ V S G + QV+EC ++LLRFAK T PV+L GH+ K
Sbjct: 172 FADELAPELLVIDSIQTIATDEVESSPGSITQVRECAASLLRFAKTTGTPVILIGHINKE 231
Query: 343 GDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPS 402
G +AGP++LEHIVD V+ EG++ YR+LRS+KNRFGST ELG++EM Q GL+ VSNPS
Sbjct: 232 GTLAGPKILEHIVDTVIQFEGDQHYMYRILRSIKNRFGSTSELGIYEMQQTGLRQVSNPS 291
Query: 403 KIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMI 460
++ LS+ H E L+G+A++ ++G R FL+E QAL S + T R G R +M+
Sbjct: 292 ELLLSQDH---EGLSGIAISSAIEGVRPFLVETQALVSSAAYGTPQRSATGFDQRRLNML 348
Query: 461 ISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIG 520
++VL K+ G KL + +F+N+ G+ +T+ A DL+V AA+ SS ++ I G GE+G
Sbjct: 349 LAVLEKRVGFKLTQKDVFVNIAGGLRVTDLAMDLSVIAAVLSSNVDTAIETGWCMAGEVG 408
Query: 521 LGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGF 561
L GE+R ++R+E+R++ KLG+ I+P +S+ T +
Sbjct: 409 LSGEVRPINRIEQRIAEAEKLGFTDIILPLHNVQSIDTRKY 449
>gi|306826207|ref|ZP_07459541.1| DNA repair protein RadA [Streptococcus sp. oral taxon 071 str.
73H25AP]
gi|304431483|gb|EFM34465.1| DNA repair protein RadA [Streptococcus sp. oral taxon 071 str.
73H25AP]
Length = 407
Score = 334 bits (857), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 184/420 (43%), Positives = 267/420 (63%), Gaps = 24/420 (5%)
Query: 163 KPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKST 222
KP ++ V + VN+ +++ E RVLGGG+VPGSLVLIGGDPG+GKST
Sbjct: 9 KPMKLAEVTSINVNRAKTEME-----------EFNRVLGGGVVPGSLVLIGGDPGIGKST 57
Query: 223 LLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVE 282
LLLQ++ ++ V V+YVSGEES +QI RA+R+ E +LY+ T+++ +
Sbjct: 58 LLLQVSTQLSQV------GTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSVRA 111
Query: 283 KVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKS 342
+V+ + P LIIDSIQT+ ++G G + QV+E T+ L++ AK NI + + GHVTK
Sbjct: 112 EVERIQPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELMQLAKTNNIAIFIVGHVTKE 171
Query: 343 GDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPS 402
G +AGPR+LEH+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS
Sbjct: 172 GTLAGPRMLEHMVDTVLYFEGERHHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPS 231
Query: 403 KIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMI 460
++FL E+ + G ++ V M+G+R L E+QAL R G+ +RA +I
Sbjct: 232 QVFLEERLDGA---TGSSIVVTMEGTRPILAEVQALVTPTMFGNAKRTTTGLDFNRASLI 288
Query: 461 ISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIG 520
++VL K+AGL LQ +L GV L E A DLAVA AI SS+ + P F+GE+G
Sbjct: 289 MAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKPTNPQECFVGELG 348
Query: 521 LGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
L GE+R V+R+E+R++ AKLG+ K VPK++ + +++E IG ++EV+ VF
Sbjct: 349 LTGEIRRVNRIEQRINEAAKLGFTKIYVPKNSLTGITPP--KEIEVIGVTTIQEVLKKVF 406
>gi|420157181|ref|ZP_14664021.1| DNA repair protein RadA [Clostridium sp. MSTE9]
gi|394757191|gb|EJF40250.1| DNA repair protein RadA [Clostridium sp. MSTE9]
Length = 455
Score = 334 bits (857), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 187/465 (40%), Positives = 281/465 (60%), Gaps = 23/465 (4%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVR 171
+++ +VCS CG+ +W+G C C TM E PV +P+
Sbjct: 5 SKSVFVCSGCGFESPKWYGKCPGCGEWNTMS-----EEIREPVRSAPKTAGHHSMSRPIS 59
Query: 172 LLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAII 231
+ E++ +Q ++ LS E+ RVLGGG+V GSL+LI GDPG+GKST+LLQ+
Sbjct: 60 INEIDTEDEQ-RYQTGLS-----ELDRVLGGGIVRGSLILISGDPGIGKSTILLQICEY- 112
Query: 232 ADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRA 291
LG+ ++YVSGEES QI RA R+ +++E L + + TDI+ +VE++Q L P
Sbjct: 113 -----LGQQLRILYVSGEESSRQIKLRARRLGVSSENLLILTETDIQIVVEQIQELKPDL 167
Query: 292 LIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVL 351
++IDSIQT+ ++ S G + QV+ECT+ ++R AK +IP+++ GHV K G IAGP+VL
Sbjct: 168 VMIDSIQTMNHPELSSSPGSVTQVRECTNYVMRTAKSLDIPIMVVGHVNKDGAIAGPKVL 227
Query: 352 EHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHS 411
EHIVDAVLY EG++ SYR+LR+VKNR+GST+E+GVF+M + GL V NPS LS +
Sbjct: 228 EHIVDAVLYFEGDRQMSYRILRAVKNRYGSTNEIGVFDMGEKGLSQVDNPSMALLSGRPK 287
Query: 412 DSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAG 469
+ ++G V +M+G+R L E+Q L + R G +R ++++VL K+AG
Sbjct: 288 N---VSGTCVTCVMEGTRPILAEVQGLATTTGFGNPRRTATGFDYNRMSLLLAVLEKKAG 344
Query: 470 LKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVS 529
++N+V G+ L E A DLAVA A+ SS + I + + GEIGL GELR VS
Sbjct: 345 YYFSNLDAYVNIVGGLRLDEPAADLAVAMALISSLKDAQIGDNVLVFGEIGLTGELRSVS 404
Query: 530 RMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKE 574
+ R++ A LG+ CI+P + K + + ++ IG +N++E
Sbjct: 405 HVNARIAEAAHLGFETCILPHACLKQV-NIEHRGIQLIGVRNIRE 448
>gi|416192648|ref|ZP_11616754.1| DNA repair protein RadA [Neisseria meningitidis ES14902]
gi|325137815|gb|EGC60390.1| DNA repair protein RadA [Neisseria meningitidis ES14902]
Length = 459
Score = 334 bits (857), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 193/476 (40%), Positives = 279/476 (58%), Gaps = 32/476 (6%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKP--EEV 167
K +T + C++CG T +W G C C T++ A + Q +W + +
Sbjct: 3 KTLKTLYQCTECGGTSPKWQGKCPHCGEWNTLQESLAAPEPKNARFQ-SWAADTSTVQSL 61
Query: 168 QPVRLLEVNK---GMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLL 224
V EV + GM +LD RVLGGGLV G+++L+GGDPG+GKSTLL
Sbjct: 62 SAVTATEVPRNPTGMGELD--------------RVLGGGLVDGAVILLGGDPGIGKSTLL 107
Query: 225 LQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKV 284
LQ A +A + V+YVSGEES +Q+ RA R+ + TE + L + +E I +
Sbjct: 108 LQTIAKMA------QSRKVLYVSGEESAQQVALRAQRLELPTEGVNLLAEIRMEAIQTAL 161
Query: 285 QPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGD 344
+ P ++IDSIQT+Y + + G + QV+EC + L R AK+ I ++L GHVTK G
Sbjct: 162 KQHQPEVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRMAKQMGIAMILVGHVTKDGA 221
Query: 345 IAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKI 404
IAGPRVLEH+VD VLY EG++ S+YR++R++KNRFG+ +ELGVF M++ GL+ VSNPS I
Sbjct: 222 IAGPRVLEHMVDTVLYFEGDQHSNYRMIRAIKNRFGAANELGVFAMTENGLKGVSNPSAI 281
Query: 405 FLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIIS 462
FL+ D+ G V V +GSR L+EIQAL G T R G++ +R M+++
Sbjct: 282 FLASYRDDT---PGSCVLVTQEGSRPLLVEIQALVDDAHGFTPKRLTVGLEQNRLAMLLA 338
Query: 463 VLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLG 522
VL + G+ + +FLN V GV + E A DLAV A+ SSF P+P GEIGL
Sbjct: 339 VLNRHGGIACFDQDVFLNAVGGVKIGEPAADLAVILAMLSSFRNRPMPEKTVVFGEIGLS 398
Query: 523 GELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINV 578
GE+R V+R ++R+ KLG+++ IVPK+ A F ++ G +L+E I++
Sbjct: 399 GEVRPVARGQERLKEAEKLGFKRAIVPKANMPRNAK-EFPNLKIYGVSSLQEAIDI 453
>gi|374599520|ref|ZP_09672522.1| DNA repair protein RadA [Myroides odoratus DSM 2801]
gi|423324668|ref|ZP_17302509.1| DNA repair protein RadA [Myroides odoratimimus CIP 103059]
gi|373910990|gb|EHQ42839.1| DNA repair protein RadA [Myroides odoratus DSM 2801]
gi|404607925|gb|EKB07416.1| DNA repair protein RadA [Myroides odoratimimus CIP 103059]
Length = 456
Score = 334 bits (857), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 184/471 (39%), Positives = 290/471 (61%), Gaps = 23/471 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEV-QPVR 171
+T + C CG +W G C C+ T+ + ++ + + + +P++
Sbjct: 5 KTAFFCQSCGAQSPKWMGQCPTCKEWNTLVEEVIQKEEKTAWKAVSSSASSSKRIAKPLK 64
Query: 172 LLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAII 231
+ E++ + I ++ L G E+ RVLGGGLVPGS+VL+GG+PG+GKSTLLLQ++
Sbjct: 65 VKEIDSAEE-----IRMNTLDG-ELNRVLGGGLVPGSMVLLGGEPGIGKSTLLLQIS--- 115
Query: 232 ADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRA 291
L P V+YVSGEES +QI RA+R+ E ++ + T+ ++I +++ + P
Sbjct: 116 -----LRLPFKVLYVSGEESQKQIKMRAERINPNNENCYILTETNTQNIFRQIEEIQPDV 170
Query: 292 LIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVL 351
LIIDSIQT++ + SAG + Q+KECT+ L +FAK+T PVL+ GH+TK G IAGP++L
Sbjct: 171 LIIDSIQTLHTDYIESSAGTVSQIKECTAELTKFAKETGTPVLIIGHITKDGSIAGPKML 230
Query: 352 EHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHS 411
EH+VD VL EG++ YR+LR+ KNRFGST ELG++EM GL+ VSNPS+I +S H
Sbjct: 231 EHMVDTVLQFEGDRNHVYRILRANKNRFGSTAELGIYEMQGSGLREVSNPSEILIS--HK 288
Query: 412 DSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAG 469
D E L+G A+A ++G R ++E+Q+L + T R G R +M+++VL K+AG
Sbjct: 289 DEE-LSGTAIAATLEGMRPLMVEVQSLVSTAVYGTPQRSATGYNLKRLNMLLAVLEKRAG 347
Query: 470 LKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVS 529
+L + +FLN+ G+++ + A DL V AAI SS + I G+ F GE+GL GE+R ++
Sbjct: 348 FRLGQKDVFLNITGGISVDDPAIDLGVVAAILSSDQDISIQKGVTFAGEVGLSGEIRPIN 407
Query: 530 RMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
R+++R+ KLG+ + +V K + S G ++ I +++V+ +F
Sbjct: 408 RVDQRIQEAEKLGFSEILVSKYNKISYTGTG---IKVILVTKIEDVVEHLF 455
>gi|301309103|ref|ZP_07215047.1| DNA repair protein RadA [Bacteroides sp. 20_3]
gi|423338831|ref|ZP_17316573.1| DNA repair protein RadA [Parabacteroides distasonis CL09T03C24]
gi|300832785|gb|EFK63411.1| DNA repair protein RadA [Bacteroides sp. 20_3]
gi|409232956|gb|EKN25797.1| DNA repair protein RadA [Parabacteroides distasonis CL09T03C24]
Length = 456
Score = 334 bits (857), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 197/472 (41%), Positives = 288/472 (61%), Gaps = 25/472 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLP--QKPEEVQPV 170
+T +VCS+CG +W G C C G Y + P V+R +P + +++PV
Sbjct: 5 KTVYVCSNCGADSPKWLGKCPNC---GEWNTYVEEIVTKEPAVKRP-VPGIMEGNKIRPV 60
Query: 171 RLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAI 230
L ++ + + RI L +E+ RVLGGGLV GSLVLIGG+PG+GKSTL+LQ
Sbjct: 61 LLRDITT---EEEARIDLKD---DELNRVLGGGLVKGSLVLIGGEPGIGKSTLVLQTVLG 114
Query: 231 IADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPR 290
+ + L YVSGEES Q+ RADR+ F+ T +E I + + P
Sbjct: 115 LTGLKTL-------YVSGEESSRQLKLRADRLSHDNPNCFILCETHLEQIFTQAANIQPD 167
Query: 291 ALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRV 350
+IIDSIQT++ V S G + QV+EC++A+L++AK++ +PVLL GH+ K G IAGP+V
Sbjct: 168 LMIIDSIQTIFTEVVESSPGSVSQVRECSAAILKYAKESGVPVLLIGHINKEGSIAGPKV 227
Query: 351 LEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQH 410
LEHIVD VL EG++ YR+LRS+KNRFGST ELG++EM Q GL+ VSNPS++ L++ H
Sbjct: 228 LEHIVDTVLQFEGDQHYMYRILRSIKNRFGSTAELGIYEMRQNGLREVSNPSELLLTQNH 287
Query: 411 SDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQA 468
E L+G+A+A ++G R FLIE QAL S T R G R +M+++VL K+A
Sbjct: 288 ---EGLSGVAIAAAIEGVRPFLIETQALVSSAVYGTPQRSATGFDLRRMNMLLAVLEKKA 344
Query: 469 GLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMV 528
G KL + +FLN+ G+ + + A DLAV ++I SS L+ I G+ GE+GL GE+R V
Sbjct: 345 GFKLIQKDVFLNIAGGLKVNDPAIDLAVISSILSSSLDISIEPGVCMAGEVGLSGEIRPV 404
Query: 529 SRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+R+E+R+ KLG+ + I+P + K T +++ + K ++E +F
Sbjct: 405 NRIEQRILEAEKLGFSRIIIPHNNLKGFDT-AKSKIQIVQVKKVEEAFRQLF 455
>gi|269214008|ref|ZP_06158298.1| DNA repair protein RadA [Neisseria cinerea ATCC 14685]
gi|269144791|gb|EEZ71209.1| DNA repair protein RadA [Neisseria cinerea ATCC 14685]
Length = 464
Score = 334 bits (857), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 193/476 (40%), Positives = 280/476 (58%), Gaps = 32/476 (6%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKP--EEV 167
K +T + C++CG T +W G C C T++ A + Q +W + +
Sbjct: 8 KTLKTLYQCTECGGTSPKWQGKCPHCGEWNTLQESLAAPEPKNARFQ-SWAADTSTVQSL 66
Query: 168 QPVRLLEVNK---GMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLL 224
V EV + GM +LD RVLGGGLV G+++L+GGDPG+GKSTLL
Sbjct: 67 SAVTATEVPRNPTGMGELD--------------RVLGGGLVDGAVILLGGDPGIGKSTLL 112
Query: 225 LQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKV 284
LQ A +A + V+YVSGEES +Q+ RA R+ + TE + L + +E I +
Sbjct: 113 LQTIAKMA------QSRKVLYVSGEESAQQVALRAQRLELPTEGVNLLAEIRMEAIQTAL 166
Query: 285 QPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGD 344
+ P ++IDSIQT+Y + + G + QV+EC + L R AK+ I ++L GHVTK G
Sbjct: 167 KQHQPEVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRMAKQMGIAMILVGHVTKDGA 226
Query: 345 IAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKI 404
IAGPRVLEH+VD VLY EG++ S+YR++R++KNRFG+ +ELGVF M++ GL+ VSNPS I
Sbjct: 227 IAGPRVLEHMVDTVLYFEGDQHSNYRMIRAIKNRFGAANELGVFAMTENGLKGVSNPSAI 286
Query: 405 FLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIIS 462
FL+ D+ G V V +GSR L+EIQAL G T R G++ +R M+++
Sbjct: 287 FLASYRDDT---PGSCVLVTQEGSRPLLVEIQALVDDAHGFTPKRLTVGLEQNRLAMLLA 343
Query: 463 VLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLG 522
VL + G+ + +FLN V GV + E A DLAV A+ SSF P+P + GEIGL
Sbjct: 344 VLNRHGGIACFDQDVFLNAVGGVKIGEPAADLAVILAMLSSFRNRPLPEKMVAFGEIGLS 403
Query: 523 GELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINV 578
GE+R V+R ++R+ KLG+++ IVPK+ A F ++ G +L+E I++
Sbjct: 404 GEVRPVARGQERLKEAEKLGFKRAIVPKANMPRNAK-EFPNLKIYGVSSLQEAIDI 458
>gi|416162896|ref|ZP_11606865.1| DNA repair protein RadA [Neisseria meningitidis N1568]
gi|418288002|ref|ZP_12900526.1| DNA repair protein RadA [Neisseria meningitidis NM233]
gi|433473185|ref|ZP_20430549.1| DNA repair protein RadA [Neisseria meningitidis 97021]
gi|433481734|ref|ZP_20438999.1| DNA repair protein RadA [Neisseria meningitidis 2006087]
gi|433483720|ref|ZP_20440948.1| DNA repair protein RadA [Neisseria meningitidis 2002038]
gi|433485919|ref|ZP_20443120.1| DNA repair protein RadA [Neisseria meningitidis 97014]
gi|325127888|gb|EGC50792.1| DNA repair protein RadA [Neisseria meningitidis N1568]
gi|372202759|gb|EHP16531.1| DNA repair protein RadA [Neisseria meningitidis NM233]
gi|432210786|gb|ELK66742.1| DNA repair protein RadA [Neisseria meningitidis 97021]
gi|432217565|gb|ELK73433.1| DNA repair protein RadA [Neisseria meningitidis 2006087]
gi|432221423|gb|ELK77233.1| DNA repair protein RadA [Neisseria meningitidis 2002038]
gi|432222965|gb|ELK78747.1| DNA repair protein RadA [Neisseria meningitidis 97014]
Length = 459
Score = 334 bits (857), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 193/476 (40%), Positives = 280/476 (58%), Gaps = 32/476 (6%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKP--EEV 167
K +T + C++CG T +W G C C T++ A + Q +W + +
Sbjct: 3 KTLKTLYQCTECGGTSPKWQGKCPHCGEWNTLQESLAAPEPKNARFQ-SWAADTSTVQSL 61
Query: 168 QPVRLLEVNK---GMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLL 224
V EV + GM +LD RVLGGGLV G+++L+GGDPG+GKSTLL
Sbjct: 62 SAVTATEVPRNPTGMGELD--------------RVLGGGLVDGAVILLGGDPGIGKSTLL 107
Query: 225 LQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKV 284
LQ A +A + V+YVSGEES +Q+ RA R+ + TE + L + +E I +
Sbjct: 108 LQTIAKMA------QSRKVLYVSGEESAQQVALRAQRLELPTEGVNLLAEIRMEAIQAAL 161
Query: 285 QPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGD 344
+ P ++IDSIQT+Y + + G + QV+EC + L R AK+ I ++L GHVTK G
Sbjct: 162 KQHQPEVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRMAKQMGIAMILVGHVTKDGA 221
Query: 345 IAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKI 404
IAGPRVLEH+VD VLY EG++ S+YR++R++KNRFG+ +ELGVF M++ GL+ VSNPS I
Sbjct: 222 IAGPRVLEHMVDTVLYFEGDQHSNYRMIRAIKNRFGAANELGVFAMTENGLKGVSNPSAI 281
Query: 405 FLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIIS 462
FL+ D+ G V V +GSR L+EIQAL G T R G++ +R M+++
Sbjct: 282 FLASYRDDT---PGSCVLVTQEGSRPLLVEIQALVDDAHGFTPKRLTVGLEQNRLAMLLA 338
Query: 463 VLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLG 522
VL + G+ + +FLN V GV + E A DLAV A+ SSF P+P + GEIGL
Sbjct: 339 VLNRHGGIACFDQDVFLNAVGGVKIGEPAADLAVILAMLSSFRNRPLPEKMVAFGEIGLS 398
Query: 523 GELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINV 578
GE+R V+R ++R+ KLG+++ IVPK+ A F ++ G +L+E I++
Sbjct: 399 GEVRPVARGQERLKEAEKLGFKRAIVPKANMPRNAK-EFPNLKIYGVSSLQEAIDI 453
>gi|255015629|ref|ZP_05287755.1| DNA repair protein RadA [Bacteroides sp. 2_1_7]
gi|262384482|ref|ZP_06077616.1| DNA repair protein RadA [Bacteroides sp. 2_1_33B]
gi|410101336|ref|ZP_11296265.1| DNA repair protein RadA [Parabacteroides sp. D25]
gi|423332507|ref|ZP_17310291.1| DNA repair protein RadA [Parabacteroides distasonis CL03T12C09]
gi|262293775|gb|EEY81709.1| DNA repair protein RadA [Bacteroides sp. 2_1_33B]
gi|409229256|gb|EKN22136.1| DNA repair protein RadA [Parabacteroides distasonis CL03T12C09]
gi|409240162|gb|EKN32943.1| DNA repair protein RadA [Parabacteroides sp. D25]
Length = 456
Score = 334 bits (857), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 197/472 (41%), Positives = 288/472 (61%), Gaps = 25/472 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLP--QKPEEVQPV 170
+T +VCS+CG +W G C C G Y + P V+R +P + +++PV
Sbjct: 5 KTVYVCSNCGADSPKWLGKCPNC---GEWNTYVEEIVTKEPAVKRP-VPGIMEGNKIRPV 60
Query: 171 RLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAI 230
L ++ + + RI L +E+ RVLGGGLV GSLVLIGG+PG+GKSTL+LQ
Sbjct: 61 LLRDITT---EEEARIDLKD---DELNRVLGGGLVKGSLVLIGGEPGIGKSTLVLQTVLG 114
Query: 231 IADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPR 290
+ + L YVSGEES Q+ RADR+ F+ T +E I + + P
Sbjct: 115 LTGLKTL-------YVSGEESSRQLKLRADRLSHDNPNCFILCETHLEQIFTQAANIQPD 167
Query: 291 ALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRV 350
+IIDSIQT++ V S G + QV+EC++A+L++AK++ +PVLL GH+ K G IAGP+V
Sbjct: 168 LMIIDSIQTIFTEVVESSPGSVSQVRECSAAILKYAKESGVPVLLIGHINKEGSIAGPKV 227
Query: 351 LEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQH 410
LEHIVD VL EG++ YR+LRS+KNRFGST ELG++EM Q GL+ VSNPS++ L++ H
Sbjct: 228 LEHIVDTVLQFEGDQHYMYRILRSIKNRFGSTAELGIYEMRQNGLREVSNPSELLLTQNH 287
Query: 411 SDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQA 468
E L+G+A+A ++G R FLIE QAL S T R G R +M+++VL K+A
Sbjct: 288 ---EGLSGVAIAAAIEGVRPFLIETQALVSSAVYGTPQRSATGFDLRRMNMLLAVLEKRA 344
Query: 469 GLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMV 528
G KL + +FLN+ G+ + + A DLAV ++I SS L+ I G+ GE+GL GE+R V
Sbjct: 345 GFKLIQKDVFLNIAGGLKVNDPAIDLAVISSILSSSLDISIEPGVCMAGEVGLSGEIRPV 404
Query: 529 SRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+R+E+R+ KLG+ + I+P + K T +++ + K ++E +F
Sbjct: 405 NRIEQRILEAEKLGFSRIIIPHNNLKGFDT-AKSKIQIVQVKKVEEAFRQLF 455
>gi|421563008|ref|ZP_16008830.1| DNA repair protein RadA [Neisseria meningitidis NM2795]
gi|421906578|ref|ZP_16336471.1| radA-liek DNA repair protein [Neisseria meningitidis alpha704]
gi|433492284|ref|ZP_20449378.1| DNA repair protein RadA [Neisseria meningitidis NM586]
gi|433494361|ref|ZP_20451431.1| DNA repair protein RadA [Neisseria meningitidis NM762]
gi|433496545|ref|ZP_20453586.1| DNA repair protein RadA [Neisseria meningitidis M7089]
gi|433498605|ref|ZP_20455614.1| DNA repair protein RadA [Neisseria meningitidis M7124]
gi|433500573|ref|ZP_20457559.1| DNA repair protein RadA [Neisseria meningitidis NM174]
gi|433502844|ref|ZP_20459809.1| DNA repair protein RadA [Neisseria meningitidis NM126]
gi|393292326|emb|CCI72411.1| radA-liek DNA repair protein [Neisseria meningitidis alpha704]
gi|402341715|gb|EJU76888.1| DNA repair protein RadA [Neisseria meningitidis NM2795]
gi|432229073|gb|ELK84766.1| DNA repair protein RadA [Neisseria meningitidis NM586]
gi|432231035|gb|ELK86705.1| DNA repair protein RadA [Neisseria meningitidis NM762]
gi|432234439|gb|ELK90059.1| DNA repair protein RadA [Neisseria meningitidis M7124]
gi|432235245|gb|ELK90861.1| DNA repair protein RadA [Neisseria meningitidis M7089]
gi|432235864|gb|ELK91473.1| DNA repair protein RadA [Neisseria meningitidis NM174]
gi|432240940|gb|ELK96471.1| DNA repair protein RadA [Neisseria meningitidis NM126]
Length = 459
Score = 334 bits (857), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 193/476 (40%), Positives = 279/476 (58%), Gaps = 32/476 (6%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKP--EEV 167
K +T + C++CG T +W G C C T++ A + Q +W + +
Sbjct: 3 KTLKTLYQCTECGGTSPKWQGKCPHCGEWNTLQESLAAPEPKNARFQ-SWAADTSTVQSL 61
Query: 168 QPVRLLEVNK---GMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLL 224
V EV + GM +LD RVLGGGLV G+++L+GGDPG+GKSTLL
Sbjct: 62 SSVTATEVPRNPTGMGELD--------------RVLGGGLVDGAVILLGGDPGIGKSTLL 107
Query: 225 LQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKV 284
LQ A +A + V+YVSGEES +Q+ RA R+ + TE + L + +E I +
Sbjct: 108 LQTIAKMA------QSRKVLYVSGEESAQQVALRAQRLELPTEGVNLLAEIRMEAIQTAL 161
Query: 285 QPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGD 344
+ P ++IDSIQT+Y + + G + QV+EC + L R AK+ I ++L GHVTK G
Sbjct: 162 KQHQPEVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRMAKQMGIAMILVGHVTKDGA 221
Query: 345 IAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKI 404
IAGPRVLEH+VD VLY EG++ S+YR++R++KNRFG+ +ELGVF M++ GL+ VSNPS I
Sbjct: 222 IAGPRVLEHMVDTVLYFEGDQHSNYRMIRAIKNRFGAANELGVFAMTENGLKGVSNPSAI 281
Query: 405 FLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIIS 462
FL+ D+ G V V +GSR L+EIQAL G T R G++ +R M+++
Sbjct: 282 FLASYRDDT---PGSCVLVTQEGSRPLLVEIQALVDDAHGFTPKRLTVGLEQNRLAMLLA 338
Query: 463 VLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLG 522
VL + G+ + +FLN V GV + E A DLAV A+ SSF P+P GEIGL
Sbjct: 339 VLNRHGGIACFDQDVFLNAVGGVKIGEPAADLAVILAMLSSFRNRPMPEKTVVFGEIGLS 398
Query: 523 GELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINV 578
GE+R V+R ++R+ KLG+++ IVPK+ A F ++ G +L+E I++
Sbjct: 399 GEVRPVARGQERLKEAEKLGFKRAIVPKANMPRNAK-EFPNLKIYGVSSLQEAIDI 453
>gi|389737050|ref|ZP_10190540.1| DNA repair protein RadA [Rhodanobacter sp. 115]
gi|388437788|gb|EIL94558.1| DNA repair protein RadA [Rhodanobacter sp. 115]
Length = 460
Score = 334 bits (857), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 198/470 (42%), Positives = 278/470 (59%), Gaps = 22/470 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRY---SAGESDEGPVVQRTWLPQKPEEVQP 169
+T +VC+DCG +W G C C + T+ + A + G + + +
Sbjct: 5 KTAYVCTDCGAEHPKWQGSCAECGAWNTLSEFVVQPAKVAAAGGARNSGYAGKAAGAAKV 64
Query: 170 VRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAA 229
L EV + L+G+ E+ RVLGGGLV GS+VLIGGDPG+GKSTLLLQM
Sbjct: 65 TALTEVATATESRT----LTGI--GELDRVLGGGLVDGSVVLIGGDPGIGKSTLLLQM-- 116
Query: 230 IIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSP 289
+ +G P VYV+GEES+ Q+ +RA R+ + E L + T IE I+E+ P
Sbjct: 117 ----LGRIGAHLPGVYVTGEESLAQVASRAQRLDLPLEPLQALAETCIERILEQAMATRP 172
Query: 290 RALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPR 349
R LIIDSIQT++ + + G + QV+E + L RFAK++ VLL GHVTK G IAGPR
Sbjct: 173 RVLIIDSIQTIWTELLTAAPGSVSQVRESAAKLTRFAKESGTSVLLVGHVTKEGGIAGPR 232
Query: 350 VLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQ 409
VLEH+VDAVLY EGE S +R+LR+ KNRFG+ +ELGVF MS GL+ V NPS IFLS
Sbjct: 233 VLEHMVDAVLYFEGESGSRFRVLRAFKNRFGAVNELGVFAMSDKGLREVPNPSAIFLS-- 290
Query: 410 HSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMKQ 467
+ SE AG AV V +G+R L+E+QAL S R G++ +R M+++VL +
Sbjct: 291 -AHSEPTAGSAVMVTREGTRPLLVEVQALVDQSSLGNPRRVALGLEQNRLAMLLAVLHRH 349
Query: 468 AGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRM 527
G+ + +F+NVV G+ + ETA DL V AI SS + P+P+ GE+GL GE+R
Sbjct: 350 GGVAAYDQDVFVNVVGGIRVQETAADLPVLLAIRSSLRDRPLPDKTVAFGEVGLSGEIRP 409
Query: 528 VSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVIN 577
V E+R+ + G+++ IVPK+ +G +ME IG + L + ++
Sbjct: 410 VPNGEERLKEASTHGFKRAIVPKANAPKKGRVG--EMEVIGVERLVQALD 457
>gi|121634576|ref|YP_974821.1| DNA repair protein RadA [Neisseria meningitidis FAM18]
gi|120866282|emb|CAM10023.1| putative DNA repair protein [Neisseria meningitidis FAM18]
Length = 464
Score = 334 bits (857), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 193/476 (40%), Positives = 279/476 (58%), Gaps = 32/476 (6%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKP--EEV 167
K +T + C++CG T +W G C C T++ A + Q +W + +
Sbjct: 8 KTLKTLYQCTECGGTSPKWQGKCPHCGEWNTLQESLAAPEPKNARFQ-SWAADTSTVQSL 66
Query: 168 QPVRLLEVNK---GMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLL 224
V EV + GM +LD RVLGGGLV G+++L+GGDPG+GKSTLL
Sbjct: 67 SSVTATEVPRNPTGMGELD--------------RVLGGGLVDGAVILLGGDPGIGKSTLL 112
Query: 225 LQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKV 284
LQ A +A + V+YVSGEES +Q+ RA R+ + TE + L + +E I +
Sbjct: 113 LQTIAKMA------QSRKVLYVSGEESAQQVALRAQRLELPTEGVNLLAEIRMEAIQTAL 166
Query: 285 QPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGD 344
+ P ++IDSIQT+Y + + G + QV+EC + L R AK+ I ++L GHVTK G
Sbjct: 167 KQHQPEVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRMAKQMGIAMILVGHVTKDGA 226
Query: 345 IAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKI 404
IAGPRVLEH+VD VLY EG++ S+YR++R++KNRFG+ +ELGVF M++ GL+ VSNPS I
Sbjct: 227 IAGPRVLEHMVDTVLYFEGDQHSNYRMIRAIKNRFGAANELGVFAMTENGLKGVSNPSAI 286
Query: 405 FLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIIS 462
FL+ D+ G V V +GSR L+EIQAL G T R G++ +R M+++
Sbjct: 287 FLASYRDDT---PGSCVLVTQEGSRPLLVEIQALVDDAHGFTPKRLTVGLEQNRLAMLLA 343
Query: 463 VLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLG 522
VL + G+ + +FLN V GV + E A DLAV A+ SSF P+P GEIGL
Sbjct: 344 VLNRHGGIACFDQDVFLNAVGGVKIGEPAADLAVILAMLSSFRNRPMPEKTVVFGEIGLS 403
Query: 523 GELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINV 578
GE+R V+R ++R+ KLG+++ IVPK+ A F ++ G +L+E I++
Sbjct: 404 GEVRPVARGQERLKEAEKLGFKRAIVPKANMPRNAK-EFPNLKIYGVSSLQEAIDI 458
>gi|327403495|ref|YP_004344333.1| DNA repair protein RadA [Fluviicola taffensis DSM 16823]
gi|327319003|gb|AEA43495.1| DNA repair protein RadA [Fluviicola taffensis DSM 16823]
Length = 453
Score = 334 bits (857), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 188/472 (39%), Positives = 283/472 (59%), Gaps = 28/472 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
++ + C +CGY +W G C +C T E E + Q ++
Sbjct: 5 KSAFFCQNCGYETPKWLGKCPSCGEWNTF----VEELVEKQLPQVIAFSTSSGRTAKAQV 60
Query: 173 LE--VNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAI 230
L+ V+ G +++ L +E+ RVLGGGLVPGSL+L GG+PG+GKSTLLLQ+A
Sbjct: 61 LQEIVSNGQRRII-------LPDSEINRVLGGGLVPGSLILFGGEPGIGKSTLLLQLA-- 111
Query: 231 IADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPR 290
+ V+YVSGEES +QI RADR+ + F+ + T+I++I ++ + +P
Sbjct: 112 ------VQTTLRVLYVSGEESEQQIKMRADRIGQKNDSCFILTETNIQNIFKQAEETTPE 165
Query: 291 ALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRV 350
LI+DSIQT++ + + G + Q++ECT+ LLR++K T IPV L GH+TK G +AGP+V
Sbjct: 166 LLIVDSIQTLFSSQIESAPGSISQIRECTAQLLRYSKMTEIPVFLIGHITKEGSLAGPKV 225
Query: 351 LEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQH 410
LEH+VDAVL EG++ YR+LR VKNRFGST+ELG++EM+ GL+ V NPS+I +S
Sbjct: 226 LEHMVDAVLQFEGDQHHVYRILRGVKNRFGSTNELGIYEMNGTGLRMVENPSEILISTGD 285
Query: 411 SDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMKQA 468
S L+G+A+A ++G R LIE+QAL + + T R G R +M+++V+ K+
Sbjct: 286 SG---LSGVAIAATLEGLRPLLIEVQALVSTAAYGTPQRSSTGFDLRRLNMLLAVMEKRC 342
Query: 469 GLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMV 528
G KL +FLN+ G+ + + A DLAV AA+ SS + I I E+GL GE+R V
Sbjct: 343 GFKLGAKDVFLNITGGIRVDDPAIDLAVVAAVLSSNADIAINRSICCSAEVGLSGEIRPV 402
Query: 529 SRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+R+++R+ KLG+ K I+ K K + F ++E I C + EV+ +F
Sbjct: 403 NRIDQRIREAEKLGFEKIIISK-YNKGIEQSNF-KIELIPCARIDEVLKALF 452
>gi|409122311|ref|ZP_11221706.1| DNA repair protein RadA [Gillisia sp. CBA3202]
Length = 454
Score = 334 bits (856), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 181/442 (40%), Positives = 270/442 (61%), Gaps = 28/442 (6%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDE----GPVVQRTWLPQKPEEVQ 168
+T + C +CG +W G C AC+ T+ D+ P V+ KP ++
Sbjct: 5 KTTFYCQNCGTQHSKWQGQCSACKEWNTLVEEVIQTPDKKGWKSPTVREAKRVSKPLKIA 64
Query: 169 PVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMA 228
+ + L+ R+ + E+ RVLGGG+VPGSL+L+GG+PG+GKSTLLLQ++
Sbjct: 65 EIEV--------SLETRLDTNNA---ELNRVLGGGIVPGSLILLGGEPGIGKSTLLLQIS 113
Query: 229 AIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLS 288
L +YVSGEES +QI RA R+ ++ + T ++I ++++ L
Sbjct: 114 --------LHLSHKTLYVSGEESQQQIKMRASRINSNPANCYILTETKTQNIFKQIEALK 165
Query: 289 PRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGP 348
P +I+DSIQT++ + S G + QV+ECT+ L++FAK+T +PV+L GH+TK G IAGP
Sbjct: 166 PEIVIVDSIQTLHSDYIESSPGSISQVRECTAELIKFAKETGVPVILIGHITKEGSIAGP 225
Query: 349 RVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSE 408
+VLEH+VD VL EG++ YR+LR+ KNRFGST ELG++EM GL+ VSNPS+I +S+
Sbjct: 226 KVLEHMVDTVLQFEGDRNHVYRILRANKNRFGSTHELGIYEMLGSGLREVSNPSEILISK 285
Query: 409 QHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMK 466
+ E L+G A++ ++G+R +IEIQAL S T R G A R +M+++VL K
Sbjct: 286 ---NDEGLSGTAISSTLEGARPLMIEIQALVSSAVYGTPQRSTTGYNAKRLNMLLAVLEK 342
Query: 467 QAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELR 526
+AG +L +FLNV G+++ + A DLAV AAI SS + I I F EIGL GE+R
Sbjct: 343 RAGFRLGAKDVFLNVTGGISVDDPAIDLAVIAAILSSNEDIAISKDICFAAEIGLAGEIR 402
Query: 527 MVSRMEKRVSTVAKLGYRKCIV 548
V+R E+R++ KLG+ ++
Sbjct: 403 PVTRAEQRITEAEKLGFSTIMI 424
>gi|349609900|ref|ZP_08889267.1| DNA repair protein RadA [Neisseria sp. GT4A_CT1]
gi|348611037|gb|EGY60711.1| DNA repair protein RadA [Neisseria sp. GT4A_CT1]
Length = 459
Score = 334 bits (856), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 193/477 (40%), Positives = 279/477 (58%), Gaps = 32/477 (6%)
Query: 109 GKANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKP--EE 166
KA +T + C++CG T +W G C C T++ A + Q +W +
Sbjct: 2 AKAPKTIYQCTECGGTSPKWQGKCPHCGEWNTLQESLAAPEPKNARFQ-SWAADTSTVQS 60
Query: 167 VQPVRLLEVNK---GMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTL 223
+ V EV + GM +LD RVLGGGLV G+++L+GGDPG+GKSTL
Sbjct: 61 LSAVTATEVPRNPTGMGELD--------------RVLGGGLVDGAVILLGGDPGIGKSTL 106
Query: 224 LLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEK 283
LLQ A +A + V+YVSGEES +Q+ RA R+ + TE + L + +E I
Sbjct: 107 LLQTIAKMA------QSRKVLYVSGEESAQQVALRAQRLELPTEGVNLLAEIRMEAIQAA 160
Query: 284 VQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSG 343
++ P ++IDSIQT+Y + + G + QV+EC + L R AK+ I ++L GHVTK G
Sbjct: 161 LKQHQPEVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRMAKQMGIAMILVGHVTKDG 220
Query: 344 DIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSK 403
IAGPRVLEH+VD VLY EG++ S+YR++R++KNRFG+ +ELGVF M++ GL+ VSNPS
Sbjct: 221 AIAGPRVLEHMVDTVLYFEGDQHSNYRMIRAIKNRFGAANELGVFAMTENGLKGVSNPSA 280
Query: 404 IFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMII 461
IFL+ D+ G V V +GSR L+EIQAL G T R G++ +R M++
Sbjct: 281 IFLASYRDDT---PGSCVLVTQEGSRPLLVEIQALVDDAHGFTPKRLTVGLEQNRLAMLL 337
Query: 462 SVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGL 521
+VL + + + +FLN V GV + E A DLAV A+ SSF P+P + GEIGL
Sbjct: 338 AVLNRHGSIACFDQDVFLNAVGGVKIGEPAADLAVILAMLSSFRNRPLPEKMVAFGEIGL 397
Query: 522 GGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINV 578
GE+R V+R ++R+ KLG+++ IVPK A F ++ G +L+E I++
Sbjct: 398 SGEVRPVARGQERLKEAEKLGFKRAIVPK-ANMPRNEKEFPNLKIFGVSSLQEAIDI 453
>gi|225570734|ref|ZP_03779757.1| hypothetical protein CLOHYLEM_06837 [Clostridium hylemonae DSM
15053]
gi|225160196|gb|EEG72815.1| hypothetical protein CLOHYLEM_06837 [Clostridium hylemonae DSM
15053]
Length = 450
Score = 334 bits (856), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 190/472 (40%), Positives = 285/472 (60%), Gaps = 26/472 (5%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQP 169
K ++ + C +CG+ +G+W G C AC+ T +E R ++ +E +
Sbjct: 3 KGKKSIFFCQNCGHEEGKWLGQCPACKEWNTF-------VEEKVTAARPGAARQMKEAEV 55
Query: 170 VRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAA 229
V L V+ + RI + E+ RVLGGG+VPGSLVL+GGDPG+GKSTLLLQ+
Sbjct: 56 VALSGVST---DEEARIKTTI---EEMDRVLGGGIVPGSLVLVGGDPGIGKSTLLLQVC- 108
Query: 230 IIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSP 289
L + ++Y+SGEES+ QI RA+RM + L L T++E I ++ P
Sbjct: 109 -----QKLSQEKEILYISGEESLAQIKLRANRMGPFKDNLLLLCETNLELIRSVIEKRRP 163
Query: 290 RALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPR 349
+ ++IDSIQT+Y VA + G + QV+E T+ ++ AK I + + GHVTK G +AGPR
Sbjct: 164 QLVVIDSIQTMYSEEVASAPGSVSQVRESTNVFMQLAKGLGISIFIVGHVTKEGTVAGPR 223
Query: 350 VLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQ 409
VLEH+VD VLY EG++ +SYR+LR VKNRFGST+E+GVFEM Q GLQ V+NPS+ LS +
Sbjct: 224 VLEHMVDTVLYFEGDRHASYRILRGVKNRFGSTNEIGVFEMRQDGLQEVANPSEYMLSGR 283
Query: 410 HSDSEFLAGLAVAVIMDGSRSFLIEIQAL-CVSGSTVSRHV-NGIQASRADMIISVLMKQ 467
+S +G VA M+G+R LIEIQAL C S + R G +R +++++VL K+
Sbjct: 284 PENS---SGSVVACSMEGTRPILIEIQALVCQSNFGMPRRTAAGTDYNRVNLLMAVLEKR 340
Query: 468 AGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRM 527
AGL L ++N+ G+ + E A DL + A+ SS+ PI + GE+GL GE+R
Sbjct: 341 AGLHLSNYDAYVNIAGGIKMNEPAIDLGIVMALISSYKNRPIDEKMIVFGEVGLSGEVRA 400
Query: 528 VSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVV 579
V+ E+RV+ KLG+ C++P+ + + G + + +G K + EV++++
Sbjct: 401 VNMPEQRVAEAKKLGFETCVLPEVSRDLVK--GVKGIRLVGVKTINEVLSLL 450
>gi|349574035|ref|ZP_08885996.1| DNA repair protein RadA [Neisseria shayeganii 871]
gi|348014389|gb|EGY53272.1| DNA repair protein RadA [Neisseria shayeganii 871]
Length = 459
Score = 334 bits (856), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 193/476 (40%), Positives = 283/476 (59%), Gaps = 32/476 (6%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQ--KPEEV 167
KA +T + CS+CG T +W G C C T++ A + Q +W + +E+
Sbjct: 3 KAPKTVYQCSECGGTTHKWQGKCPHCGEWNTLQESLAAPEPKNVRFQ-SWAADTAQVQEL 61
Query: 168 QPVRLLEVNK---GMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLL 224
V EV + GM +LD RVLGGGLV G+++L+GGDPG+GKSTLL
Sbjct: 62 SQVTATEVPREPTGMGELD--------------RVLGGGLVNGAVILLGGDPGIGKSTLL 107
Query: 225 LQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKV 284
LQ A++A + V+YVSGEES +Q+ RA R+ + +E + L + +E I +
Sbjct: 108 LQTVAMMA------KSRKVLYVSGEESAQQVALRAQRLGLHSEGVNLLAEIRMEAIQVAL 161
Query: 285 QPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGD 344
+ P ++IDSIQT+Y + + G + QV+EC + L R AK+ + ++L GHVTK G
Sbjct: 162 KQHEPAVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRMAKQMGMAMILVGHVTKDGA 221
Query: 345 IAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKI 404
IAGPRVLEH+VD VLY EG++ S+YR++R++KNRFG+ +ELGVF M++ GL+ VSNPS I
Sbjct: 222 IAGPRVLEHMVDTVLYFEGDQHSNYRMIRAIKNRFGAANELGVFAMTEHGLKGVSNPSAI 281
Query: 405 FLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIIS 462
FL+ D + G V V +GSR L+EIQAL G T R G++ +R M+++
Sbjct: 282 FLASYRDD---VPGSCVLVTQEGSRPLLVEIQALVDDAHGFTPKRLTVGLEQNRLAMLLA 338
Query: 463 VLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLG 522
VL + AG+ + +FLN V GV + E A DLA+ A+ SSF P+P + GEIGL
Sbjct: 339 VLNRHAGIACFDQDVFLNAVGGVKINEPAADLAIILAMFSSFRNRPLPEKMVAFGEIGLS 398
Query: 523 GELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINV 578
GE+R V+R ++R+ KLG+++ IVP+ A F ++ G +L+E + V
Sbjct: 399 GEVRPVARGQERLKEAEKLGFKRAIVPQ-ANLPRQPKDFPGLQIHGVSSLQEAVEV 453
>gi|385339757|ref|YP_005893629.1| DNA repair protein RadA [Neisseria meningitidis G2136]
gi|416205663|ref|ZP_11620611.1| DNA repair protein RadA [Neisseria meningitidis 961-5945]
gi|433466932|ref|ZP_20424389.1| DNA repair protein RadA [Neisseria meningitidis 87255]
gi|433468939|ref|ZP_20426368.1| DNA repair protein RadA [Neisseria meningitidis 98080]
gi|325142013|gb|EGC64445.1| DNA repair protein RadA [Neisseria meningitidis 961-5945]
gi|325198001|gb|ADY93457.1| DNA repair protein RadA [Neisseria meningitidis G2136]
gi|432203508|gb|ELK59559.1| DNA repair protein RadA [Neisseria meningitidis 87255]
gi|432205332|gb|ELK61362.1| DNA repair protein RadA [Neisseria meningitidis 98080]
Length = 459
Score = 334 bits (856), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 193/476 (40%), Positives = 279/476 (58%), Gaps = 32/476 (6%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKP--EEV 167
K +T + C++CG T +W G C C T++ A + Q +W + +
Sbjct: 3 KTLKTLYQCTECGGTSPKWQGKCPHCGEWNTLQESLAAPEPKNARFQ-SWAADTSTVQSL 61
Query: 168 QPVRLLEVNK---GMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLL 224
V EV + GM +LD RVLGGGLV G+++L+GGDPG+GKSTLL
Sbjct: 62 SAVTAAEVPRNPTGMGELD--------------RVLGGGLVDGAVILLGGDPGIGKSTLL 107
Query: 225 LQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKV 284
LQ A +A + V+YVSGEES +Q+ RA R+ + TE + L + +E I +
Sbjct: 108 LQTIAKMA------QSRKVLYVSGEESAQQVALRAQRLELPTEGVNLLAEIRMEAIQTAL 161
Query: 285 QPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGD 344
+ P ++IDSIQT+Y + + G + QV+EC + L R AK+ I ++L GHVTK G
Sbjct: 162 KQHQPEVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRMAKQMGIAMILVGHVTKDGA 221
Query: 345 IAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKI 404
IAGPRVLEH+VD VLY EG++ S+YR++R++KNRFG+ +ELGVF M++ GL+ VSNPS I
Sbjct: 222 IAGPRVLEHMVDTVLYFEGDQHSNYRMIRAIKNRFGAANELGVFAMTENGLKGVSNPSAI 281
Query: 405 FLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIIS 462
FL+ D+ G V V +GSR L+EIQAL G T R G++ +R M+++
Sbjct: 282 FLASYRDDT---PGSCVLVTQEGSRPLLVEIQALVDDAHGFTPKRLTVGLEQNRLAMLLA 338
Query: 463 VLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLG 522
VL + G+ + +FLN V GV + E A DLAV A+ SSF P+P GEIGL
Sbjct: 339 VLNRHGGIACFDQDVFLNAVGGVKIGEPAADLAVILAMLSSFRNRPMPEKTVVFGEIGLS 398
Query: 523 GELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINV 578
GE+R V+R ++R+ KLG+++ IVPK+ A F ++ G +L+E I++
Sbjct: 399 GEVRPVARGQERLKEAEKLGFKRAIVPKANMPRNAK-EFPNLKIYGVSSLQEAIDI 453
>gi|238019161|ref|ZP_04599587.1| hypothetical protein VEIDISOL_01024 [Veillonella dispar ATCC 17748]
gi|237863860|gb|EEP65150.1| hypothetical protein VEIDISOL_01024 [Veillonella dispar ATCC 17748]
Length = 457
Score = 334 bits (856), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 188/475 (39%), Positives = 290/475 (61%), Gaps = 21/475 (4%)
Query: 109 GKANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQ 168
GKA ++ + C +CG +W G C C T+ E+ R Q +
Sbjct: 2 GKA-KSVFFCQNCGAESSKWMGRCPQCGEWNTLVEEIIKETKHSRTPSRGVGNQT---TK 57
Query: 169 PVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMA 228
P L ++ ++ +S FG E+ RVLGGG+VPG+L+L+GGDPG+GKSTLLLQ++
Sbjct: 58 PTALPDI-----EISSLARVSTTFG-EIDRVLGGGIVPGALMLLGGDPGIGKSTLLLQVS 111
Query: 229 AIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLS 288
+AD V+Y SGEES Q+ RA+R+ I +E L + + TD++ I+E+ +
Sbjct: 112 QKVADT-----VGTVLYASGEESQLQLKLRAERLHINSERLQVIADTDLDHILEQADTMM 166
Query: 289 PRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGP 348
P L+IDSIQT+Y + + G + QV+ECTS LLRF K+ NIP ++ GHVTK G+IAGP
Sbjct: 167 PSLLVIDSIQTMYTGDIDAAPGSVSQVRECTSRLLRFCKERNIPTVIIGHVTKEGNIAGP 226
Query: 349 RVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSE 408
R+LEH+VD VLY EGE+ +R+LRS+KNRFGST E G+F M + GLQ +SNPS L+E
Sbjct: 227 RMLEHMVDVVLYFEGERSYQFRILRSIKNRFGSTSETGIFAMVEEGLQELSNPSASLLAE 286
Query: 409 QHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMK 466
+ SD E +G AV + ++G R L+E+Q+L V+ + R G +R ++++VL K
Sbjct: 287 R-SDEE--SGSAVMIYLEGVRPILVEVQSLVVTTAFGMPRRTAIGYDLNRLIVLLAVLEK 343
Query: 467 QAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELR 526
+ G L +++NV+ G+ + E A DL++A AI S+ +P + +GE+GL G +R
Sbjct: 344 RCGFTLGNKDVYVNVIGGLKVNEPACDLSMAVAIVSNLKNRIVPTDMVILGEVGLTGNVR 403
Query: 527 MVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVFT 581
+ R+E+R++ KLG++K I+P+ K + ++ G K+++E + +VF+
Sbjct: 404 SIPRIEQRINEAKKLGFKKFIIPEGNYKQIKD-NDSSIKIRGVKSIQEAMQLVFS 457
>gi|73663539|ref|YP_302320.1| DNA repair protein RadA [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
gi|72496054|dbj|BAE19375.1| putative DNA repair protein [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
Length = 458
Score = 334 bits (856), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 193/472 (40%), Positives = 284/472 (60%), Gaps = 35/472 (7%)
Query: 118 CSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQK----PEEVQPVRLL 173
C CGY +W G C C M E V Q+ P+ + V V+ L
Sbjct: 10 CMACGYQSPKWMGKCPNCGGWNQM---------EEIVEQKAASPKHGVRSRDNVSKVQKL 60
Query: 174 EVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIAD 233
N+ + R+ + NE RVLGGG+V GSLVLIGGDPG+GKSTLLLQ+ A
Sbjct: 61 --NEIKHETTPRVKTNS---NEFNRVLGGGIVNGSLVLIGGDPGIGKSTLLLQICA---- 111
Query: 234 VHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALI 293
L + V+Y++GEES+ Q RA+R+ + EL +++ TD+E I E V+ + P L+
Sbjct: 112 --SLSQSKNVLYITGEESLSQTKLRAERLDEDSSELNVFAETDLEVIHETVKQIKPDLLV 169
Query: 294 IDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEH 353
+DSIQT++ ++ + G + QV+E T +L+ AK+ NI + GHVTK G IAGPR+LEH
Sbjct: 170 VDSIQTIFHPEISSAPGSVSQVRESTQSLMNIAKQMNIATFIVGHVTKEGQIAGPRLLEH 229
Query: 354 IVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDS 413
+VD VLY EG++ +YR+LR+VKNRFGST+E+G+FEM Q GL+ V NPS++FL E+ ++
Sbjct: 230 MVDTVLYFEGDEHHAYRILRAVKNRFGSTNEMGIFEMKQTGLKGVKNPSEMFLEERSAN- 288
Query: 414 EFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVS---RHVNGIQASRADMIISVLMKQAGL 470
+ G + M+G+R LIE+QAL V+ +T + R GI +R ++++VL K+
Sbjct: 289 --VPGSTIVSTMEGTRPLLIEVQAL-VTPTTFNNPRRMATGIDHNRLSLLMAVLEKKENY 345
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ+ ++ V GV LTE A DL + A SSF + + FIGE+GL GE+R VSR
Sbjct: 346 LLQQQDAYIKVAGGVRLTEPAVDLGIIIATASSFKDLTVDGLDCFIGEVGLTGEVRRVSR 405
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGF-EQMEFIGCKNLKEVINVVFT 581
+E+RV KLG+++ I+P+S ++ F E ++ IG K++ E + T
Sbjct: 406 IEQRVQEAEKLGFKRVIIPES---NIGGWQFPEGIKVIGVKSVHEALKYALT 454
>gi|312862411|ref|ZP_07722654.1| DNA repair protein RadA [Streptococcus vestibularis F0396]
gi|311102054|gb|EFQ60254.1| DNA repair protein RadA [Streptococcus vestibularis F0396]
Length = 415
Score = 334 bits (856), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 182/390 (46%), Positives = 252/390 (64%), Gaps = 13/390 (3%)
Query: 194 NEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVE 253
+E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ +A+ V+YVSGEES E
Sbjct: 37 DEFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLAN------KGTVLYVSGEESAE 90
Query: 254 QIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLM 313
QI R++R+ E +LY+ T+++ + +V+ + P LIIDSIQT+ ++G G +
Sbjct: 91 QIKLRSERLGDIDNEFYLYAETNMQAVRSQVEAIKPDFLIIDSIQTIMSPEISGVQGSVS 150
Query: 314 QVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLR 373
QV+E T+ L++ AK NI + GHVTK G +AGPR+LEH+VD VLY EGE+ ++R+LR
Sbjct: 151 QVREVTAELMQIAKTNNIATFIVGHVTKEGQLAGPRMLEHMVDTVLYFEGERHHTFRILR 210
Query: 374 SVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLI 433
+VKNRFGST+E+G+FEM GL V NPS++FL E+ + G A+ V M+GSR L
Sbjct: 211 AVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGA---TGSAIVVTMEGSRPILA 267
Query: 434 EIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETA 491
E+QAL R G+ +R +I++VL K+ GL LQ +L GV L E A
Sbjct: 268 EVQALVTPTVFGNAKRTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPA 327
Query: 492 GDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKS 551
DLAVA AI SS+ E P AFIGEIGL GE+R V+R+E+R++ AKLG+ K PK+
Sbjct: 328 IDLAVAVAISSSYKELPTNPQEAFIGEIGLTGEIRRVARIEQRINEAAKLGFTKIYAPKN 387
Query: 552 AEKSLATLGFEQMEFIGCKNLKEVINVVFT 581
+ + E ++ IG + EV+ VF+
Sbjct: 388 SLHGMKIP--EGIQVIGVTTVGEVLKKVFS 415
>gi|418577090|ref|ZP_13141220.1| DNA repair protein RadA [Staphylococcus saprophyticus subsp.
saprophyticus KACC 16562]
gi|379324452|gb|EHY91600.1| DNA repair protein RadA [Staphylococcus saprophyticus subsp.
saprophyticus KACC 16562]
Length = 463
Score = 334 bits (856), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 193/472 (40%), Positives = 284/472 (60%), Gaps = 35/472 (7%)
Query: 118 CSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQK----PEEVQPVRLL 173
C CGY +W G C C M E V Q+ P+ + V V+ L
Sbjct: 17 CMACGYQSPKWMGKCPNCGGWNQM---------EEIVEQKAASPKHGVRSRDNVSKVQKL 67
Query: 174 EVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIAD 233
N+ + R+ + NE RVLGGG+V GSLVLIGGDPG+GKSTLLLQ+ A
Sbjct: 68 --NEIKHETTPRVKTNS---NEFNRVLGGGIVNGSLVLIGGDPGIGKSTLLLQICA---- 118
Query: 234 VHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALI 293
L + V+Y++GEES+ Q RA+R+ + EL +++ TD+E I E V+ + P L+
Sbjct: 119 --SLSQSKNVLYITGEESLSQTKLRAERLDEDSSELNVFAETDLEVIHETVKQIKPDLLV 176
Query: 294 IDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEH 353
+DSIQT++ ++ + G + QV+E T +L+ AK+ NI + GHVTK G IAGPR+LEH
Sbjct: 177 VDSIQTIFHPEISSAPGSVSQVRESTQSLMNIAKQMNIATFIVGHVTKEGQIAGPRLLEH 236
Query: 354 IVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDS 413
+VD VLY EG++ +YR+LR+VKNRFGST+E+G+FEM Q GL+ V NPS++FL E+ ++
Sbjct: 237 MVDTVLYFEGDEHHAYRILRAVKNRFGSTNEMGIFEMKQTGLKGVKNPSEMFLEERSAN- 295
Query: 414 EFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVS---RHVNGIQASRADMIISVLMKQAGL 470
+ G + M+G+R LIE+QAL V+ +T + R GI +R ++++VL K+
Sbjct: 296 --VPGSTIVSTMEGTRPLLIEVQAL-VTPTTFNNPRRMATGIDHNRLSLLMAVLEKKENY 352
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ+ ++ V GV LTE A DL + A SSF + + FIGE+GL GE+R VSR
Sbjct: 353 LLQQQDAYIKVAGGVRLTEPAVDLGIIIATASSFKDLTVDGLDCFIGEVGLTGEVRRVSR 412
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGF-EQMEFIGCKNLKEVINVVFT 581
+E+RV KLG+++ I+P+S ++ F E ++ IG K++ E + T
Sbjct: 413 IEQRVQEAEKLGFKRVIIPES---NIGGWQFPEGIKVIGVKSVHEALKYALT 461
>gi|334364430|ref|ZP_08513421.1| DNA repair protein RadA [Alistipes sp. HGB5]
gi|390948035|ref|YP_006411795.1| DNA repair protein RadA [Alistipes finegoldii DSM 17242]
gi|313159351|gb|EFR58715.1| DNA repair protein RadA [Alistipes sp. HGB5]
gi|390424604|gb|AFL79110.1| DNA repair protein RadA [Alistipes finegoldii DSM 17242]
Length = 455
Score = 334 bits (856), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 188/438 (42%), Positives = 267/438 (60%), Gaps = 27/438 (6%)
Query: 116 WVCSDCGYTDGQWWGMCRACESVGTM-KRYSAGESDEGPVVQRTWLPQ-KPEEVQPVRLL 173
+ C +CG+ +W G C +C T + A ES P LP KP+ V+ +R
Sbjct: 8 YFCKNCGFEAPKWLGRCPSCGEWNTFTEEIVARESGSVPANVAGSLPAAKPQRVRDIRES 67
Query: 174 EVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIAD 233
E +++D L +EV RVLGGG+VPGSL+L+GG+PG+GKSTL LQ+A
Sbjct: 68 E----HRRMD-------LGNSEVNRVLGGGMVPGSLILLGGEPGIGKSTLSLQLALAANG 116
Query: 234 VHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALI 293
+ L YVSGEES EQI RA R+ I +E +Y T +E+IV ++ P ++
Sbjct: 117 LKTL-------YVSGEESAEQIKMRAGRIGIGNDECLIYPETLLENIVNQIGEHRPDLVV 169
Query: 294 IDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEH 353
IDSIQT+Y + SAG + Q++EC + LL++AK T + + GH+TK G IAGP++LEH
Sbjct: 170 IDSIQTIYTDLLDSSAGSVSQIRECAATLLKYAKSTGTSIFIIGHITKDGTIAGPKILEH 229
Query: 354 IVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDS 413
IVD VL EG+ + YR+LR +KNRFG+T E+GVFEM GL+ V NPS+I L+
Sbjct: 230 IVDVVLQFEGDSNNIYRILRGIKNRFGATFEIGVFEMLDNGLRGVDNPSEILLTHYE--- 286
Query: 414 EFLAGLAVAVIMDGSRSFLIEIQALCVSGS---TVSRHVNGIQASRADMIISVLMKQAGL 470
E L+G+AV DG R +LIE+QAL VSG+ T R G R +M+++VL K+ G+
Sbjct: 287 EPLSGIAVGASADGVRPYLIEVQAL-VSGAAYGTPQRTTTGYDTKRMNMLLAVLEKRVGM 345
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
K+ + +FLN G + + DLAV AA+ SS+ + P+ G+ GEIGL GE+R R
Sbjct: 346 KMFQKDVFLNFAGGFKVADPGLDLAVVAAVISSYYDRPVAEGVCCAGEIGLSGEVRPAPR 405
Query: 531 MEKRVSTVAKLGYRKCIV 548
E+R+S A+LG+++ IV
Sbjct: 406 TEQRISEAARLGFKRIIV 423
>gi|414156366|ref|ZP_11412668.1| DNA repair protein RadA [Streptococcus sp. F0442]
gi|410870013|gb|EKS17972.1| DNA repair protein RadA [Streptococcus sp. F0442]
Length = 420
Score = 334 bits (856), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 181/388 (46%), Positives = 253/388 (65%), Gaps = 13/388 (3%)
Query: 195 EVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQ 254
E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ ++ V V+YVSGEES +Q
Sbjct: 43 EFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSQV------GTVLYVSGEESAQQ 96
Query: 255 IGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQ 314
I RA+R+ E +LY+ T+++ + +V+ + P LIIDSIQT+ ++G G + Q
Sbjct: 97 IKLRAERLGDIDSEFYLYAETNMQSVRAEVERIQPDFLIIDSIQTIMSPEISGVQGSVSQ 156
Query: 315 VKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRS 374
V+E T+ L++ AK NI + + GHVTK G +AGPR+LEH+VD VLY EGE+ ++R+LR+
Sbjct: 157 VREVTAELMQLAKTNNIAIFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGERHHTFRILRA 216
Query: 375 VKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIE 434
VKNRFGST+E+G+FEM GL V NPS++FL E+ + G ++ V M+G+R L E
Sbjct: 217 VKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGA---TGSSIVVTMEGTRPILAE 273
Query: 435 IQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAG 492
+QAL R G+ +RA +I++VL K+AGL LQ +L GV L E A
Sbjct: 274 VQALVTPTMFGNAKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAI 333
Query: 493 DLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSA 552
DLAVA AI SS+ + P F+GE+GL GE+R VSR+E+R++ AKLG+ K VPK++
Sbjct: 334 DLAVAVAIASSYKDKPTNPQECFVGELGLTGEIRRVSRIEQRINEAAKLGFTKIYVPKNS 393
Query: 553 EKSLATLGFEQMEFIGCKNLKEVINVVF 580
+ T ++ IG L EV+ VF
Sbjct: 394 LTGITTPS--GIQVIGVTTLSEVLKKVF 419
>gi|315612139|ref|ZP_07887055.1| DNA repair protein RadA [Streptococcus sanguinis ATCC 49296]
gi|331265457|ref|YP_004325087.1| DNA repair protein [Streptococcus oralis Uo5]
gi|315315802|gb|EFU63838.1| DNA repair protein RadA [Streptococcus sanguinis ATCC 49296]
gi|326682129|emb|CBY99745.1| DNA repair protein, predicted ATP-dependent serine protease
[Streptococcus oralis Uo5]
Length = 407
Score = 334 bits (856), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 184/420 (43%), Positives = 267/420 (63%), Gaps = 24/420 (5%)
Query: 163 KPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKST 222
KP ++ V + VN+ +++ E RVLGGG+VPGSLVLIGGDPG+GKST
Sbjct: 9 KPMKLAEVTSINVNRTKTEME-----------EFNRVLGGGVVPGSLVLIGGDPGIGKST 57
Query: 223 LLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVE 282
LLLQ++ ++ V V+YVSGEES +QI RA+R+ E +LY+ T+++ +
Sbjct: 58 LLLQVSTQLSQV------GTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSVRS 111
Query: 283 KVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKS 342
+V+ + P LIIDSIQT+ ++G G + QV+E T+ L++ AK NI + + GHVTK
Sbjct: 112 EVERIQPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELMQLAKTNNIAIFIVGHVTKE 171
Query: 343 GDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPS 402
G +AGPR+LEH+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS
Sbjct: 172 GTLAGPRMLEHMVDTVLYFEGERHHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPS 231
Query: 403 KIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMI 460
++FL E+ + G ++ V M+G+R L E+QAL R G+ +RA +I
Sbjct: 232 QVFLEERLDGA---TGSSIVVTMEGTRPILAEVQALVTPTMFGNAKRTTTGLDFNRASLI 288
Query: 461 ISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIG 520
++VL K+AGL LQ +L GV L E A DLAVA AI SS+ + P F+GE+G
Sbjct: 289 MAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKPTNPQECFVGELG 348
Query: 521 LGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
L GE+R V+R+E+R++ AKLG+ K VPK++ + +++E IG ++EV+ VF
Sbjct: 349 LTGEIRRVNRIEQRINEAAKLGFTKIYVPKNSLTGITPP--KEIEVIGVTTIQEVLKKVF 406
>gi|304405666|ref|ZP_07387325.1| DNA repair protein RadA [Paenibacillus curdlanolyticus YK9]
gi|304345705|gb|EFM11540.1| DNA repair protein RadA [Paenibacillus curdlanolyticus YK9]
Length = 456
Score = 334 bits (856), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 199/477 (41%), Positives = 286/477 (59%), Gaps = 35/477 (7%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLP-----QKPEEV 167
+ + C +CG +W G C C + +M ++ VV+ T Q E+
Sbjct: 5 KVKFACMECGTESPKWLGKCPGCGAWNSMV------EEKETVVKTTGAAGAAVFQTKEKP 58
Query: 168 QPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQM 227
+ + +E ++ ++D ++ E+ RVLGGG+VPGSL+L+GGDPG+GKSTLLLQ
Sbjct: 59 RSIIHIESDQ-EPRIDTKL-------GELNRVLGGGVVPGSLILVGGDPGIGKSTLLLQA 110
Query: 228 AAIIADVHDLGEPS-PVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQP 286
+ H L ++Y+SGEESV Q RADR+ +E+L++ T++E I E ++
Sbjct: 111 S------HSLAASGMRILYISGEESVRQTRLRADRLGSLSEQLYVLCETNVESIREAIES 164
Query: 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIA 346
+ P ++IDSIQTV+ V + G + QV+ECTS +R AK + +L GHVTK G IA
Sbjct: 165 VEPALVVIDSIQTVFDPNVQSAPGSVAQVRECTSHFMRIAKIKGVATVLVGHVTKEGAIA 224
Query: 347 GPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFL 406
GPR+LEH+VD VLY EGE+ +YRLLR+VKNRFGST+E+G+FEM + GL+ V+NPS++FL
Sbjct: 225 GPRMLEHMVDCVLYFEGERHHTYRLLRAVKNRFGSTNEIGIFEMGESGLREVANPSELFL 284
Query: 407 SEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVS--RHVNGIQASRADMIISVL 464
SE+ +AG V M+G+R L+E+QAL S + S R GI R +II+VL
Sbjct: 285 SERPLG---VAGSTVVASMEGTRPVLVELQALVASTNFPSPRRMSAGIDHHRMALIIAVL 341
Query: 465 MKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPI-PNGIAFIGEIGLGG 523
K+ G+ LQ +LNV GV L E A DLA A +I SSF + P P I F GE+GL G
Sbjct: 342 EKRMGMFLQNQDAYLNVAGGVKLDEPAVDLAAAVSIASSFRDAPTRPFDIIF-GEVGLTG 400
Query: 524 ELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
E+R VSR E+RV KLG+++ I+P+++ K +E IG + E +
Sbjct: 401 EVRAVSRAEQRVREAEKLGFKRVIMPENSLKGWKPP--SNIEIIGVSTVAEALRAAL 455
>gi|227879315|ref|ZP_03997181.1| DNA repair protein RadA [Lactobacillus crispatus JV-V01]
gi|256849118|ref|ZP_05554551.1| DNA repair protein RadA [Lactobacillus crispatus MV-1A-US]
gi|293381073|ref|ZP_06627094.1| DNA repair protein RadA [Lactobacillus crispatus 214-1]
gi|295692209|ref|YP_003600819.1| DNA repair protein rada [Lactobacillus crispatus ST1]
gi|312977952|ref|ZP_07789698.1| DNA repair protein RadA [Lactobacillus crispatus CTV-05]
gi|423318253|ref|ZP_17296150.1| DNA repair protein RadA [Lactobacillus crispatus FB049-03]
gi|423320426|ref|ZP_17298298.1| DNA repair protein RadA [Lactobacillus crispatus FB077-07]
gi|227861084|gb|EEJ68737.1| DNA repair protein RadA [Lactobacillus crispatus JV-V01]
gi|256713894|gb|EEU28882.1| DNA repair protein RadA [Lactobacillus crispatus MV-1A-US]
gi|290922373|gb|EFD99354.1| DNA repair protein RadA [Lactobacillus crispatus 214-1]
gi|295030315|emb|CBL49794.1| DNA repair protein radA [Lactobacillus crispatus ST1]
gi|310895259|gb|EFQ44327.1| DNA repair protein RadA [Lactobacillus crispatus CTV-05]
gi|405596742|gb|EKB70075.1| DNA repair protein RadA [Lactobacillus crispatus FB049-03]
gi|405605030|gb|EKB78097.1| DNA repair protein RadA [Lactobacillus crispatus FB077-07]
Length = 458
Score = 334 bits (856), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 187/470 (39%), Positives = 275/470 (58%), Gaps = 19/470 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T + C CGY + G C C + ++ + + L QK +PV+L
Sbjct: 5 KTQYKCRSCGYISASYLGRCPNCGAWNQFEKETEEVQKRSTKATASRLIQKTGLNEPVKL 64
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
+K + + RI E+ RVLGGG+VPGSLVLIGGDPG+GKSTL+LQ+ +
Sbjct: 65 ---DKIKAEKEERIVTKS---EELNRVLGGGIVPGSLVLIGGDPGIGKSTLMLQIMS--- 115
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
DL E V+YVSGEES QI RADR+ + + LY TD+ DI E++ + P +
Sbjct: 116 ---DLSEKYKVLYVSGEESANQIKLRADRLGVGQSNMLLYPETDMHDIREQINDVKPDFV 172
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
+IDSIQT+ + G QV+E TS L++ AK I V + GHVTK G IAGP++LE
Sbjct: 173 VIDSIQTMNEPSLDSMTGSASQVREVTSELMKIAKMDAITVFVIGHVTKEGAIAGPKILE 232
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EG++ SYR+L SVKNRFG+ +E+G+FEM GL+ V+NPS IFL ++ +
Sbjct: 233 HMVDTVLYFEGDEHHSYRILHSVKNRFGAANEIGMFEMVNEGLREVTNPSSIFLDQRLPN 292
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMKQAGL 470
S G AV V ++G+R L EIQAL + R +GI ++A ++++VL K+ L
Sbjct: 293 S---TGSAVVVSLEGTRPLLAEIQALVTPTAFGYAKRTTSGISFNKASLLLAVLEKRGNL 349
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ ++L G+ L E A DLA+A A+ SS+ + I F+GE+GL GE+R V +
Sbjct: 350 MLQNQDVYLTATGGIKLNEPAIDLAIAMAVASSYTDKEISPTDCFVGEVGLTGEVRRVDK 409
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
++ RV AK+G+++ +P+ + L +E I ++ + + +VF
Sbjct: 410 IDARVKEAAKVGFKRIFIPR--HNMYSGLKDHGIEVIPVSSIPQALKLVF 457
>gi|416178641|ref|ZP_11610669.1| DNA repair protein RadA [Neisseria meningitidis M6190]
gi|421558593|ref|ZP_16004471.1| DNA repair protein RadA [Neisseria meningitidis 92045]
gi|325131984|gb|EGC54683.1| DNA repair protein RadA [Neisseria meningitidis M6190]
gi|402337336|gb|EJU72584.1| DNA repair protein RadA [Neisseria meningitidis 92045]
Length = 459
Score = 334 bits (856), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 193/476 (40%), Positives = 279/476 (58%), Gaps = 32/476 (6%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKP--EEV 167
K +T + C++CG T +W G C C T++ A + Q +W + +
Sbjct: 3 KTLKTLYQCTECGGTSPKWQGKCPHCGEWNTLQESLAAPEPKNARFQ-SWAADTSTVQSL 61
Query: 168 QPVRLLEVNK---GMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLL 224
V EV + GM +LD RVLGGGLV G+++L+GGDPG+GKSTLL
Sbjct: 62 SSVTATEVPRNPTGMGELD--------------RVLGGGLVDGAVILLGGDPGIGKSTLL 107
Query: 225 LQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKV 284
LQ A +A + V+YVSGEES +Q+ RA R+ + TE + L + +E I +
Sbjct: 108 LQTIAKMA------QSRKVLYVSGEESAQQVALRAQRLELPTEGVNLLAEIRMEAIQAAL 161
Query: 285 QPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGD 344
+ P ++IDSIQT+Y + + G + QV+EC + L R AK+ I ++L GHVTK G
Sbjct: 162 KQHQPEVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRMAKQMGIAMILVGHVTKDGA 221
Query: 345 IAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKI 404
IAGPRVLEH+VD VLY EG++ S+YR++R++KNRFG+ +ELGVF M++ GL+ VSNPS I
Sbjct: 222 IAGPRVLEHMVDTVLYFEGDQHSNYRMIRAIKNRFGAANELGVFAMTENGLKGVSNPSAI 281
Query: 405 FLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIIS 462
FL+ D+ G V V +GSR L+EIQAL G T R G++ +R M+++
Sbjct: 282 FLASYRDDT---PGSCVLVTQEGSRPLLVEIQALVDDAHGFTPKRLTVGLEQNRLAMLLA 338
Query: 463 VLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLG 522
VL + G+ + +FLN V GV + E A DLAV A+ SSF P+P GEIGL
Sbjct: 339 VLNRHGGIACFDQDVFLNAVGGVKIGEPAADLAVILAMLSSFRNRPMPEKTVVFGEIGLS 398
Query: 523 GELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINV 578
GE+R V+R ++R+ KLG+++ IVPK+ A F ++ G +L+E I++
Sbjct: 399 GEVRPVARGQERLKEAEKLGFKRAIVPKANMPRNAK-EFPNLKIYGVSSLQEAIDI 453
>gi|407474766|ref|YP_006789166.1| DNA repair protein RadA [Clostridium acidurici 9a]
gi|407051274|gb|AFS79319.1| DNA repair protein RadA [Clostridium acidurici 9a]
Length = 454
Score = 334 bits (856), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 192/471 (40%), Positives = 291/471 (61%), Gaps = 26/471 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+ + C +CG+ +W G C +C S + +G + PQ E V+ +L
Sbjct: 5 KNRYSCQECGHESLKWLGKCPSCNSWNSFVEEIYDARSKGSIS-----PQNLE-VKVEKL 58
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
+++ K D +GL NE+ RVLGGG+V GSL LIGGDPG+GKSTL +Q+A
Sbjct: 59 VDI----KTEDEERIKTGL--NELDRVLGGGIVKGSLTLIGGDPGIGKSTLSVQVAN--- 109
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
++ ++G + +YVSGEES +QI R+DR+ I ++ELFL T+++ I+ V+ ++P L
Sbjct: 110 NISNMGFKT--LYVSGEESAKQIKMRSDRLGIKSDELFLLPETNLDIIMGTVEKINPDIL 167
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQT Y + + G + QV++ TSAL+R +K + ++ GHVTK G IAGPRVLE
Sbjct: 168 IIDSIQTAYNPNIESAPGSVSQVRDITSALMRTSKSKEMASIIIGHVTKEGSIAGPRVLE 227
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EGE+ ++YRLLR VKNRFGST+E+G+FEM +GL V NPS++ L+ + +
Sbjct: 228 HMVDTVLYFEGERHNTYRLLRGVKNRFGSTNEIGIFEMRDIGLVQVKNPSEMLLTGRPQN 287
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVS---RHVNGIQASRADMIISVLMKQAG 469
+ AG V ++G+R L+E+QAL VS + R GI +R ++I+VL K+ G
Sbjct: 288 T---AGTVVVPSVEGTRPMLVEVQAL-VSNTLFGMPRRVATGIDYNRVVLMIAVLEKKVG 343
Query: 470 LKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVS 529
L LQ + ++N+V G+ + E A DL + AI SSF + + + +GE+GL GELR +S
Sbjct: 344 LHLQNSDAYINIVGGLQIKEPAMDLGIVCAIASSFKDVAVDSKTVVMGEVGLTGELRTIS 403
Query: 530 RMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+E R+ +KLG+ + IVP + K L + + +E IG N+++ + V
Sbjct: 404 FIENRIKEASKLGFERAIVPMANLKGLGKI--KGIEVIGVANIEDALRKVL 452
>gi|294793816|ref|ZP_06758953.1| DNA repair protein RadA [Veillonella sp. 3_1_44]
gi|294455386|gb|EFG23758.1| DNA repair protein RadA [Veillonella sp. 3_1_44]
Length = 457
Score = 334 bits (856), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 184/473 (38%), Positives = 288/473 (60%), Gaps = 24/473 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQ--KPEEVQPV 170
++ + C +CG +W G C C T+ E+ R Q KP + +
Sbjct: 5 KSVFFCQNCGAESSKWMGRCPQCGEWNTLVEEIIKETKHSRTPSRGVGNQTAKPTALPDI 64
Query: 171 RLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAI 230
+ + + +S FG E+ RVLGGG+VPG+L+L+GGDPG+GKSTLLLQ++
Sbjct: 65 EISSIAR----------VSTTFG-EIDRVLGGGIVPGALMLLGGDPGIGKSTLLLQVSQK 113
Query: 231 IADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPR 290
+AD V+Y SGEES Q+ RA+R+ I +E L + + TD++ I+E+ + ++P
Sbjct: 114 VADT-----VGAVLYASGEESQLQLKLRAERLHINSERLQVIADTDLDHILEQAEAMTPS 168
Query: 291 ALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRV 350
L+ DSIQT+Y + + G + QV+ECTS LLRF K+ NIP ++ GHVTK G+IAGPR+
Sbjct: 169 LLVTDSIQTMYTGDIDAAPGSVSQVRECTSRLLRFCKERNIPTVIIGHVTKEGNIAGPRM 228
Query: 351 LEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQH 410
LEH+VD VLY EGE+ +R+LRS+KNRFGST E G+F M + GLQ +SNPS L+E+
Sbjct: 229 LEHMVDVVLYFEGERSYQFRILRSIKNRFGSTSETGIFAMVEEGLQELSNPSASLLAER- 287
Query: 411 SDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMKQA 468
SD E +G AV + ++G R L+E+Q+L V+ + R G +R ++++VL K+
Sbjct: 288 SDEE--SGSAVMIYLEGVRPILVEVQSLVVTTAFGMPRRTAIGYDLNRLIVLLAVLEKRC 345
Query: 469 GLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMV 528
G L +++NV+ G+ + E A DL++A AI S+ +P + +GE+GL G +R +
Sbjct: 346 GFTLGNKDVYVNVIGGLKVNEPACDLSMAVAIVSNLKNRIVPTDMVILGEVGLTGNVRSI 405
Query: 529 SRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVFT 581
R+E+R++ KLG++K I+P+ K + ++ G K+++E + +VF+
Sbjct: 406 PRIEQRINEAKKLGFKKFIIPEGNYKQIKD-NDSSIKIKGVKSIQEAMQLVFS 457
>gi|167766275|ref|ZP_02438328.1| hypothetical protein CLOSS21_00779 [Clostridium sp. SS2/1]
gi|317496966|ref|ZP_07955296.1| DNA repair protein RadA [Lachnospiraceae bacterium 5_1_63FAA]
gi|167711994|gb|EDS22573.1| DNA repair protein RadA [Clostridium sp. SS2/1]
gi|291559092|emb|CBL37892.1| DNA repair protein RadA [butyrate-producing bacterium SSC/2]
gi|316895978|gb|EFV18130.1| DNA repair protein RadA [Lachnospiraceae bacterium 5_1_63FAA]
Length = 451
Score = 334 bits (856), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 191/469 (40%), Positives = 277/469 (59%), Gaps = 24/469 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T + CS CG+ +W G C AC+ T E+ +G P+ +
Sbjct: 5 KTVYFCSQCGHESSKWMGQCPACKQWNTFTEEKVTETKKGGA------KSLKTSASPMNI 58
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
EV + + RIP +G+ +E+ RVLGGG+V GSL L+GGDPG+GKSTLLLQ+ +A
Sbjct: 59 SEVTV---ENEERIP-TGI--HELDRVLGGGIVKGSLSLVGGDPGIGKSTLLLQVCRNLA 112
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+ V+Y+SGEES+ QI RA+R+ EE+ LY TD++ I + P
Sbjct: 113 N-----SKRKVLYISGEESMHQIKMRAERIGTFEEEMLLYCETDLDAITNAILKTKPEFA 167
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
+IDSIQT+Y ++ +AG + QV+E T+A++R AK+ NI V + GHVTK G +AGPR LE
Sbjct: 168 VIDSIQTMYSEDLSSAAGSVSQVREVTAAMMRVAKENNIAVFIVGHVTKEGVVAGPRTLE 227
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EGE+ ++YR+LR VKNRFGST+E+GVFEM GL V NPSK L+ + D
Sbjct: 228 HMVDTVLYFEGEREAAYRILRGVKNRFGSTNEIGVFEMCNNGLVEVENPSKTMLNGRPLD 287
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVLMKQAGL 470
+ +G V M+G+R LIEIQAL S R GI +R +++++VL K+ GL
Sbjct: 288 A---SGSVVVCSMEGTRPILIEIQALVSPTSFQMPRRTAVGIDYNRVNLLMAVLEKRVGL 344
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
+L ++N+ G+ L E A DL + AI SS+ PI GE+GL GE+R VS
Sbjct: 345 QLGGCDAYVNLAGGMKLGEPAIDLGIIMAIASSYKNRPILEDTIIFGEVGLVGEVRAVSG 404
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVV 579
E R+ KLG+++CI+P++ + M +G N+ E ++++
Sbjct: 405 GEARIKEAQKLGFKRCILPQANVDQIKVQ--TDMRLVGVSNVMEALDLI 451
>gi|417934742|ref|ZP_12578062.1| DNA repair protein RadA [Streptococcus mitis bv. 2 str. F0392]
gi|340771312|gb|EGR93827.1| DNA repair protein RadA [Streptococcus mitis bv. 2 str. F0392]
Length = 407
Score = 334 bits (856), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 183/420 (43%), Positives = 268/420 (63%), Gaps = 24/420 (5%)
Query: 163 KPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKST 222
KP ++ V + VN+ +++ E RVLGGG+VPGSLVLIGGDPG+GKST
Sbjct: 9 KPMKLAEVTSINVNRTKTEME-----------EFNRVLGGGVVPGSLVLIGGDPGIGKST 57
Query: 223 LLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVE 282
LLLQ++ ++ V V+YVSGEES +QI RA+R+ E +LY+ T+++ +
Sbjct: 58 LLLQVSTQLSQV------GTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSVRA 111
Query: 283 KVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKS 342
+V+ + P LIIDSIQT+ ++G G + QV+E T+ L++ AK NI + + GHVTK
Sbjct: 112 EVERIQPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELMQLAKTNNIAIFIVGHVTKE 171
Query: 343 GDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPS 402
G +AGPR+LEH+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS
Sbjct: 172 GTLAGPRMLEHMVDTVLYFEGERHHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPS 231
Query: 403 KIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMI 460
++FL E+ + G ++ V M+G+R L E+QAL R G+ +RA +I
Sbjct: 232 QVFLEERLDGA---TGSSIVVTMEGTRPILAEVQALVTPTMFGNAKRTTTGLDFNRASLI 288
Query: 461 ISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIG 520
++VL K+AGL LQ +L GV L E A DLAVA AI SS+ + P F+GE+G
Sbjct: 289 MAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKPTNPQECFVGELG 348
Query: 521 LGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
L GE+R V+R+E+R++ AKLG+ K VPK++ + ++++ IG ++EV+ +VF
Sbjct: 349 LTGEIRRVNRIEQRINEAAKLGFTKIYVPKNSLTGITPP--KEIQVIGVTTIQEVLKMVF 406
>gi|320159507|ref|YP_004172731.1| DNA repair protein RadA [Anaerolinea thermophila UNI-1]
gi|319993360|dbj|BAJ62131.1| DNA repair protein RadA [Anaerolinea thermophila UNI-1]
Length = 468
Score = 334 bits (856), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 201/473 (42%), Positives = 287/473 (60%), Gaps = 21/473 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T +VC +CG + G C C + +M QP RL
Sbjct: 8 QTRYVCQNCGRVAARAMGRCPQCGAWNSMVEEIIAPPSTPAKSPSASSSPGGFTSQPRRL 67
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
E+ +G + +P+ E ARVLGGG+VPGS+ L+GGDPG+GKSTL+LQ+A
Sbjct: 68 DEI-EGDHEARLPVPI-----GEFARVLGGGVVPGSITLVGGDPGIGKSTLMLQVAL--- 118
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMM---IATEELFLYSSTDIEDIVEKVQPLSP 289
++ + V+Y+SGEES Q+ RA R++ E LFL + T+++ ++E V+ L+P
Sbjct: 119 ---EMAQERRVLYISGEESERQVKMRAVRLLNGRPVPENLFLLTETNLDSMLEHVRSLAP 175
Query: 290 RALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPR 349
L++DSIQTVYL + SAG + QV+EC S L AK I + + GHVTK G IAGPR
Sbjct: 176 SVLVVDSIQTVYLPALESSAGSVSQVRECASRLRDLAKSAGISIFVIGHVTKEGIIAGPR 235
Query: 350 VLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQ 409
VLEHIVD VLY+EG+++ SYRLLRSVKNRFG+T E+GVFEM + G+ V NPS+ FL+E+
Sbjct: 236 VLEHIVDTVLYLEGDRYQSYRLLRSVKNRFGATSEVGVFEMLERGMSEVLNPSEAFLAER 295
Query: 410 HSDSEFLAGLAVAVIMDGSRSFLIEIQALCV-SGSTVSRHV-NGIQASRADMIISVLMKQ 467
+ + G A+AV M+G+R L+EIQ L S T+ R NGI +R +I +VL ++
Sbjct: 296 LVN---VPGSAIAVTMEGTRPLLVEIQGLTSPSPLTLPRRTPNGIDGNRLLLITAVLTRR 352
Query: 468 AGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRM 527
G++L E +F+NV+ G+ +TE A DLAVAAAI SS + P+ IGE+GL GELRM
Sbjct: 353 LGMRLAEQDVFVNVIGGLRITEPAADLAVAAAIASSMKDTPVRANAVLIGEVGLSGELRM 412
Query: 528 VSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
S+M R+ AKLG+ I+P+ K E ++ + ++L+E +N+
Sbjct: 413 PSQMSARLREAAKLGFDTAIIPRRIRKGGEAYP-EGIQVLEARSLREALNLAL 464
>gi|254424012|ref|ZP_05037730.1| DNA repair protein RadA [Synechococcus sp. PCC 7335]
gi|196191501|gb|EDX86465.1| DNA repair protein RadA [Synechococcus sp. PCC 7335]
Length = 485
Score = 333 bits (855), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 195/469 (41%), Positives = 290/469 (61%), Gaps = 29/469 (6%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRY---SAGESDEGPVVQRTWLPQKPEEVQ 168
R+ ++C+ CG Q +G C C + ++ S + P ++ + ++V
Sbjct: 4 TRSIYICNACGAESRQHFGKCPTCGTWNSLVEQVVESQLAASTRPSMKSRTSSTRRKKVP 63
Query: 169 PV-RL-LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQ 226
PV RL L ++ RIP SG +E+ RVLGGG+VPGSLVL+GGDPG+GKSTLLLQ
Sbjct: 64 PVPRLSLRFDQIQDHPQTRIP-SGY--HELDRVLGGGIVPGSLVLLGGDPGIGKSTLLLQ 120
Query: 227 MAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMI--------ATEELFLYSSTDIE 278
A + L + +P++YV EES +Q+ R+ R+ I E L+L T++E
Sbjct: 121 TA------NQLAKGTPILYVCAEESGQQVKLRSLRLGINQSEQSNGIQENLYLLPETNLE 174
Query: 279 DIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGH 338
I+E++ L P+ +IDSIQ ++ + + G + QV+ECTSAL++ AKK NI + + GH
Sbjct: 175 TILEELDSLRPKVAVIDSIQALFYSALTSAPGSVAQVRECTSALMQLAKKENISLFIVGH 234
Query: 339 VTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAV 398
VTK G IAGP+VLEH+VD VLY EG++F+S+RLLRSVKNRFG+T ELGVFEM GL+ V
Sbjct: 235 VTKEGAIAGPKVLEHLVDTVLYFEGDRFASHRLLRSVKNRFGATHELGVFEMVDKGLEEV 294
Query: 399 SNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASR 456
NPS++F+S Q E + G+A V +G+R ++E+Q+L S S+ R GI+ +R
Sbjct: 295 LNPSELFMSNQE---ENVPGVATIVACEGTRPLVVELQSLVSPTSYSSPRRSTTGIEYNR 351
Query: 457 ADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFI 516
I++VL K+ G+ L + ++ G+ + E A DL +A A+ +SF + I + I
Sbjct: 352 LLQILAVLEKRVGIPLSKLDAYVASSGGLNVGEPAADLGIAVAVAASFRDRIIDPELVLI 411
Query: 517 GEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQME 565
GE+GLGG++R VS+ME R+ AKLG+++ +VPKS ++ LG E E
Sbjct: 412 GEVGLGGQIRPVSQMELRLKEAAKLGFKRALVPKSQGRN--DLGMEVTE 458
>gi|421565117|ref|ZP_16010903.1| DNA repair protein RadA [Neisseria meningitidis NM3081]
gi|402345446|gb|EJU80563.1| DNA repair protein RadA [Neisseria meningitidis NM3081]
Length = 459
Score = 333 bits (855), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 193/476 (40%), Positives = 279/476 (58%), Gaps = 32/476 (6%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKP--EEV 167
K +T + C++CG T +W G C C T++ A + Q +W + +
Sbjct: 3 KTLKTLYQCTECGGTSPKWQGKCPHCGEWNTLQESLAAPEPKNARFQ-SWAADTSTVQSL 61
Query: 168 QPVRLLEVNK---GMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLL 224
V EV + GM +LD RVLGGGLV G+++L+GGDPG+GKSTLL
Sbjct: 62 SSVTATEVPRNPTGMGELD--------------RVLGGGLVDGAVILLGGDPGIGKSTLL 107
Query: 225 LQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKV 284
LQ A +A + V+YVSGEES +Q+ RA R+ + TE + L + +E I +
Sbjct: 108 LQTIAKMA------QSRKVLYVSGEESAQQVALRAQRLELPTEGVNLLAEIRMEAIQAAL 161
Query: 285 QPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGD 344
+ P ++IDSIQT+Y + + G + QV+EC + L R AK+ I ++L GHVTK G
Sbjct: 162 KQHQPEVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRMAKQMGIAMILVGHVTKDGA 221
Query: 345 IAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKI 404
IAGPRVLEH+VD VLY EG++ S+YR++R++KNRFG+ +ELGVF M++ GL+ VSNPS I
Sbjct: 222 IAGPRVLEHMVDTVLYFEGDQHSNYRMIRAIKNRFGAANELGVFAMTENGLKGVSNPSAI 281
Query: 405 FLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIIS 462
FL+ D+ G V V +GSR L+EIQAL G T R G++ +R M+++
Sbjct: 282 FLASYRDDT---PGSCVLVTQEGSRPLLVEIQALVDDAHGFTPKRLTVGLEQNRLAMLLA 338
Query: 463 VLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLG 522
VL + G+ + +FLN V GV + E A DLAV A+ SSF P+P GEIGL
Sbjct: 339 VLNRHGGIACFDQDVFLNAVGGVKIGEPAADLAVILAMLSSFRNRPMPEKTVVFGEIGLS 398
Query: 523 GELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINV 578
GE+R V+R ++R+ KLG+++ IVPK+ A F ++ G +L+E I++
Sbjct: 399 GEVRPVARGQERLKEAEKLGFKRAIVPKANMPRNAK-EFPNLKIYGVSSLQEAIDI 453
>gi|381400739|ref|ZP_09925660.1| DNA repair protein RadA [Kingella kingae PYKK081]
gi|380834293|gb|EIC14140.1| DNA repair protein RadA [Kingella kingae PYKK081]
Length = 458
Score = 333 bits (855), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 191/477 (40%), Positives = 284/477 (59%), Gaps = 34/477 (7%)
Query: 109 GKANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQ--KPEE 166
KA + + C++CG T +W G C C T+ + Q +W + + +E
Sbjct: 2 AKAPKIQFQCTECGGTTPKWVGKCPHCGEWNTLSEQLTAPEPKNARFQ-SWAAETTQVQE 60
Query: 167 VQPVRLLEVNK---GMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTL 223
+ V +EV + GM +LD RVLGGGLV G+++L+GGDPG+GKSTL
Sbjct: 61 LSKVTAMEVPREATGMGELD--------------RVLGGGLVDGAVILLGGDPGIGKSTL 106
Query: 224 LLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEK 283
LLQ A++A + V+YVSGEES +Q+ R+ R+ + + + L + +E I
Sbjct: 107 LLQTIALMA------KKRKVLYVSGEESAQQVALRSQRLGLNADGVNLLAEIRLEAIQAA 160
Query: 284 VQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSG 343
++ P ++IDSIQT+Y + + G + QV+EC + L R AK+ I ++ GHVTK G
Sbjct: 161 LKQHEPSVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRIAKQMGIAMIFVGHVTKDG 220
Query: 344 DIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSK 403
IAGPRVLEH+VD VLY EG++ S+YR++R++KNRFG+ +ELGVF M++ GL+ VSNPS
Sbjct: 221 AIAGPRVLEHMVDTVLYFEGDQHSNYRMIRAIKNRFGAANELGVFAMTETGLKGVSNPSA 280
Query: 404 IFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMII 461
IFL+ D +AG V V +GSR L+EIQAL G T R G++ +R M++
Sbjct: 281 IFLASYRDD---VAGSCVLVTQEGSRPLLVEIQALVDDAHGFTPKRLTVGLEQNRLAMLL 337
Query: 462 SVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGL 521
+VL + AG+ + +FLN V GV ++E A DLAV A+ SS+ P+P + GEIGL
Sbjct: 338 AVLNRHAGVACFDQDVFLNAVGGVKISEPAADLAVILAMLSSYRNKPLPEKMVAFGEIGL 397
Query: 522 GGELRMVSRMEKRVSTVAKLGYRKCIVPKSA-EKSLATLGFEQMEFIGCKNLKEVIN 577
GE+R V R ++R+ KLG+++ IVPK+ K+L F ++ G +L+E +N
Sbjct: 398 SGEIRPVPRGQERLKEAEKLGFKRAIVPKANLPKNLKE--FPSLKIQGVSSLQEAVN 452
>gi|168492310|ref|ZP_02716453.1| DNA repair protein RadA [Streptococcus pneumoniae CDC0288-04]
gi|183573469|gb|EDT93997.1| DNA repair protein RadA [Streptococcus pneumoniae CDC0288-04]
Length = 420
Score = 333 bits (855), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 185/421 (43%), Positives = 268/421 (63%), Gaps = 26/421 (6%)
Query: 163 KPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKST 222
KP ++ V + VN+ +++ E RVLGGG+VPGSLVLIGGDPG+GKST
Sbjct: 22 KPMKLAEVTSINVNRTKTEME-----------EFNRVLGGGVVPGSLVLIGGDPGIGKST 70
Query: 223 LLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVE 282
LLLQ++ ++ V V+YVSGEES +QI RA+R+ E +LY+ T+++ +
Sbjct: 71 LLLQVSTQLSQV------GTVLYVSGEESAQQIKLRAERLGDIDREFYLYAETNMQSVRA 124
Query: 283 KVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKS 342
+V+ + P LIIDSIQT+ ++G G + QV+E T+ L++ AK NI + + GHVTK
Sbjct: 125 EVERIQPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELMQLAKTNNIAIFIVGHVTKE 184
Query: 343 GDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPS 402
G +AGPR+LEH+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS
Sbjct: 185 GTLAGPRMLEHMVDTVLYFEGERHHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPS 244
Query: 403 KIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMI 460
++FL E+ + G ++ V M+G+R L E+QAL R G+ +RA +I
Sbjct: 245 QVFLEERLDGA---TGSSIVVTMEGTRPILAEVQALVTPTMFGNAKRTTTGLDFNRASLI 301
Query: 461 ISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIG 520
++VL K+AGL LQ +L GV L E A DLAVA AI SS+ + P F+GE+G
Sbjct: 302 MAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKPTNPQECFVGELG 361
Query: 521 LGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGF-EQMEFIGCKNLKEVINVV 579
L GE+R V+R+E+R++ AKLG+ K VPK+ SL + ++++ IG ++EV+ V
Sbjct: 362 LTGEIRRVNRIEQRINEAAKLGFTKIYVPKN---SLTGITLPKEIQVIGVTTIQEVLKKV 418
Query: 580 F 580
F
Sbjct: 419 F 419
>gi|90962224|ref|YP_536140.1| DNA repair protein RadA [Lactobacillus salivarius UCC118]
gi|90821418|gb|ABE00057.1| DNA repair protein [Lactobacillus salivarius UCC118]
Length = 457
Score = 333 bits (855), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 188/477 (39%), Positives = 289/477 (60%), Gaps = 30/477 (6%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTM-----KRYSAGESDEGPVVQRTWLPQKPEE 166
+T +VC +C Y ++ G C C S ++ K+ S+ ++ P V + + KP+
Sbjct: 4 TKTRYVCQNCEYISPRYLGRCPNCGSWNSLVEEIEKKESSTKAQ--PRVSISGITVKPKL 61
Query: 167 VQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQ 226
+ V +E + L+ E+ RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ
Sbjct: 62 IDDVSTVETPRFKTNLE-----------ELNRVLGGGIVPGSLVLIGGDPGIGKSTLLLQ 110
Query: 227 MAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQP 286
++ + LG+ V+YVSGEES QI RADR+ + EL+LY TD++ I + ++
Sbjct: 111 VSG---QLSTLGKK--VLYVSGEESATQIKLRADRLGVHGTELYLYPETDMDSIRKNIEL 165
Query: 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIA 346
L P ++IDS+QT+ + + G + Q++E T L++ AK I V + GHVTK G IA
Sbjct: 166 LKPDFVVIDSVQTMQEPEMTAAVGSVSQIREVTGDLMQIAKTNGITVFVVGHVTKGGAIA 225
Query: 347 GPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFL 406
GP++LEH+VD VLY EG++ ++R+LR+VKNRFGST+E+G+FEM GL V+NPS+IFL
Sbjct: 226 GPKILEHMVDTVLYFEGDQHRTFRILRAVKNRFGSTNEIGIFEMKNGGLSEVANPSEIFL 285
Query: 407 SEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVL 464
E+ + G AV ++G+R L+E+QAL + R G+ +R ++++VL
Sbjct: 286 EERLKGA---TGSAVVASLEGTRPILVELQALVTPTAFGNAKRTTTGLDHNRVALLMAVL 342
Query: 465 MKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGE 524
K+AGL LQ +L GV L E A DLA+A ++ SS+ + FIGE+GL GE
Sbjct: 343 EKRAGLLLQNQDAYLKAAGGVKLDEPAIDLAIAVSLVSSYRDAETRPTDCFIGEVGLTGE 402
Query: 525 LRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVFT 581
+R V+R+E+RV AKLG+++ +PK+ + +++E +G L + + ++F+
Sbjct: 403 IRRVNRIEQRVVEAAKLGFKRVFLPKNNLDGW--MPPKEIEVVGVSTLNQALKLIFS 457
>gi|417941571|ref|ZP_12584857.1| DNA repair protein RadA [Streptococcus oralis SK313]
gi|343388207|gb|EGV00794.1| DNA repair protein RadA [Streptococcus oralis SK313]
Length = 407
Score = 333 bits (855), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 184/420 (43%), Positives = 267/420 (63%), Gaps = 24/420 (5%)
Query: 163 KPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKST 222
KP ++ V + VN+ +++ E RVLGGG+VPGSLVLIGGDPG+GKST
Sbjct: 9 KPMKLAEVTSINVNRTKTEME-----------EFNRVLGGGVVPGSLVLIGGDPGIGKST 57
Query: 223 LLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVE 282
LLLQ++ ++ V V+YVSGEES +QI RA+R+ E +LY+ T+++ +
Sbjct: 58 LLLQVSTQLSQV------GTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSVRA 111
Query: 283 KVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKS 342
+V+ + P LIIDSIQT+ ++G G + QV+E T+ L++ AK NI + + GHVTK
Sbjct: 112 EVERIQPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELMQLAKTNNIAIFIVGHVTKE 171
Query: 343 GDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPS 402
G +AGPR+LEH+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS
Sbjct: 172 GTLAGPRMLEHMVDTVLYFEGERHHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPS 231
Query: 403 KIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMI 460
++FL E+ + G ++ V M+G+R L E+QAL R G+ +RA +I
Sbjct: 232 QVFLEERLDGA---TGSSIVVTMEGTRPILAEVQALVTPTMFGNAKRTTTGLDFNRASLI 288
Query: 461 ISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIG 520
++VL K+AGL LQ +L GV L E A DLAVA AI SS+ + P F+GE+G
Sbjct: 289 MAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKPTNPQECFVGELG 348
Query: 521 LGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
L GE+R V+R+E+R++ AKLG+ K VPK++ + +++E IG ++EV+ VF
Sbjct: 349 LTGEIRRVNRIEQRINEAAKLGFTKIYVPKNSLTGITPP--KEIEVIGVTTIQEVLKKVF 406
>gi|385328116|ref|YP_005882419.1| putative DNA repair protein [Neisseria meningitidis alpha710]
gi|385342216|ref|YP_005896087.1| DNA repair protein RadA [Neisseria meningitidis M01-240149]
gi|385856937|ref|YP_005903449.1| DNA repair protein RadA [Neisseria meningitidis NZ-05/33]
gi|416188212|ref|ZP_11614681.1| DNA repair protein RadA [Neisseria meningitidis M0579]
gi|308388968|gb|ADO31288.1| putative DNA repair protein [Neisseria meningitidis alpha710]
gi|325135995|gb|EGC58605.1| DNA repair protein RadA [Neisseria meningitidis M0579]
gi|325202422|gb|ADY97876.1| DNA repair protein RadA [Neisseria meningitidis M01-240149]
gi|325207826|gb|ADZ03278.1| DNA repair protein RadA [Neisseria meningitidis NZ-05/33]
Length = 459
Score = 333 bits (855), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 193/476 (40%), Positives = 280/476 (58%), Gaps = 32/476 (6%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKP--EEV 167
K +T + C++CG T +W G C C T++ A + Q +W + +
Sbjct: 3 KTLKTLYQCTECGGTSPKWQGKCPHCGEWNTLQESLAAPEPKNARFQ-SWAADTSTVQSL 61
Query: 168 QPVRLLEVNK---GMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLL 224
V EV + GM +LD RVLGGGLV G+++L+GGDPG+GKSTLL
Sbjct: 62 SSVTATEVPRNPTGMGELD--------------RVLGGGLVDGAVILLGGDPGIGKSTLL 107
Query: 225 LQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKV 284
LQ A +A + V+YVSGEES +Q+ RA R+ + TE + L + +E I +
Sbjct: 108 LQTIAKMA------QSRKVLYVSGEESAQQVALRAQRLELPTEGVNLLAEIRMEAIQAAL 161
Query: 285 QPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGD 344
+ P ++IDSIQT+Y + + G + QV+EC + L R AK+ I ++L GHVTK G
Sbjct: 162 KQHQPEVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRMAKQMGIAMILVGHVTKDGA 221
Query: 345 IAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKI 404
IAGPRVLEH+VD VLY EG++ S+YR++R++KNRFG+ +ELGVF M++ GL+ VSNPS I
Sbjct: 222 IAGPRVLEHMVDTVLYFEGDQHSNYRMIRAIKNRFGAANELGVFAMTENGLKGVSNPSAI 281
Query: 405 FLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIIS 462
FL+ D+ G V V +GSR L+EIQAL G T R G++ +R M+++
Sbjct: 282 FLASYRDDT---PGSCVLVTQEGSRPLLVEIQALVDDAHGFTPKRLTVGLEQNRLAMLLA 338
Query: 463 VLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLG 522
VL + G+ + +FLN V GV + E A DLAV A+ SSF P+P + GEIGL
Sbjct: 339 VLNRHGGIACFDQDVFLNAVGGVKIGEPAADLAVILAMLSSFRNRPLPEKMVAFGEIGLS 398
Query: 523 GELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINV 578
GE+R V+R ++R+ KLG+++ IVPK+ A F ++ G +L+E I++
Sbjct: 399 GEVRPVARGQERLKEAEKLGFKRAIVPKANMPRNAK-EFPNLKIYGVSSLQEAIDI 453
>gi|229496083|ref|ZP_04389805.1| DNA repair protein RadA [Porphyromonas endodontalis ATCC 35406]
gi|229316979|gb|EEN82890.1| DNA repair protein RadA [Porphyromonas endodontalis ATCC 35406]
Length = 463
Score = 333 bits (855), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 188/474 (39%), Positives = 277/474 (58%), Gaps = 23/474 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGES--DEGPVVQRTWLPQKPEEVQPV 170
+ ++VCS+CG + +W G C C+ T+K S G VV+R KP +P+
Sbjct: 6 KVSFVCSECGASYPKWQGQCTVCKEWNTLKEEVERPSLPKGGSVVERI-TGYKPSVARPL 64
Query: 171 RLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAI 230
+E ++ + W L E RVLGGGLV GS L+GG+PG+GKSTLLLQ
Sbjct: 65 HSIEASEEAR---W-----DLLDGEFNRVLGGGLVRGSFTLLGGEPGIGKSTLLLQTMLR 116
Query: 231 IADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPR 290
+ + ++YVSGEES +Q+ RADR+ +Y ST IE+I+ Q + P
Sbjct: 117 LQTLR-------ILYVSGEESEQQLKMRADRLSREKSNCLIYCSTSIEEILATAQEVHPD 169
Query: 291 ALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRV 350
L+IDSIQTV S G Q+KEC + LL++AK + +++ GH+TK G IAGP+V
Sbjct: 170 LLVIDSIQTVATSSSESSPGTPSQIKECANLLLQYAKTQGVSIIVVGHITKDGSIAGPKV 229
Query: 351 LEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQH 410
LEH VD VL EG+K YR+LR+ KNRFGST E+G++EM GL AV NPS+ +S+
Sbjct: 230 LEHTVDTVLQFEGDKHFLYRILRASKNRFGSTHEIGIYEMRNEGLMAVENPSEHLVSK-- 287
Query: 411 SDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQA 468
D E L+G AVAV ++G+R LIE QAL S + R G R +M+++VL K+A
Sbjct: 288 -DMEALSGRAVAVALEGARPLLIETQALVSSAIYANPQRSATGFDLRRLNMLLAVLEKRA 346
Query: 469 GLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMV 528
G KL + +FLN+ G+ + + A DLAV +A+ SS L+ IP+ GE+GL GE+R V
Sbjct: 347 GFKLIKQDVFLNIAGGIRINDPAVDLAVLSAVLSSGLDRAIPSTFCIAGEVGLSGEIRAV 406
Query: 529 SRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVFTT 582
R+E+R++ ++G++ I+P+S + + C ++E ++F++
Sbjct: 407 QRIEQRIAEAERIGFKDIIIPRSNDSYRLHPPGRAIRIHLCSGVEEAFRILFSS 460
>gi|418111374|ref|ZP_12748379.1| DNA repair protein RadA [Streptococcus pneumoniae GA41538]
gi|353786431|gb|EHD66842.1| DNA repair protein RadA [Streptococcus pneumoniae GA41538]
Length = 420
Score = 333 bits (855), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 187/422 (44%), Positives = 268/422 (63%), Gaps = 27/422 (6%)
Query: 165 EEVQPVRLLEV---NKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKS 221
E+ +P++L EV N + D E RVLGGG+VPGSLVLIGGDPG+GKS
Sbjct: 19 EKTKPMKLAEVTSINVNRTKTDME---------EFNRVLGGGVVPGSLVLIGGDPGIGKS 69
Query: 222 TLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIV 281
TLLLQ++ ++ V V+YVSGEES +QI RA+R+ E +LY+ T+++ +
Sbjct: 70 TLLLQVSTQLSQV------GTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSVR 123
Query: 282 EKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTK 341
+V+ + P LIIDSIQT+ ++G G + QV+E T+ L++ AK NI + + GHVTK
Sbjct: 124 AEVERIQPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELMQLAKTNNIAIFIVGHVTK 183
Query: 342 SGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNP 401
G +AGPR+LEH+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NP
Sbjct: 184 EGTLAGPRMLEHMVDTVLYFEGERHHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNP 243
Query: 402 SKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADM 459
S++FL E+ + G ++ V M+G+R L E+QAL R G+ +RA +
Sbjct: 244 SQVFLEERLDGA---TGSSIVVTMEGTRPILAEVQALVTPTMFGNAKRTTTGLDFNRASL 300
Query: 460 IISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEI 519
I++VL K+AGL LQ +L GV L E A DLAVA AI SS+ + P F+GE+
Sbjct: 301 IMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKPTNPQECFVGEL 360
Query: 520 GLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGF-EQMEFIGCKNLKEVINV 578
GL GE+R V+R+E+R++ AKLG+ K VPK+ SL + ++++ IG ++EV+
Sbjct: 361 GLTGEIRRVNRIEQRINEAAKLGFTKIYVPKN---SLTGITLPKEIQVIGVTTIQEVLKK 417
Query: 579 VF 580
VF
Sbjct: 418 VF 419
>gi|15902069|ref|NP_357619.1| DNA repair protein RadA [Streptococcus pneumoniae R6]
gi|111657252|ref|ZP_01408020.1| hypothetical protein SpneT_02001532 [Streptococcus pneumoniae
TIGR4]
gi|116516243|ref|YP_815444.1| DNA repair protein RadA [Streptococcus pneumoniae D39]
gi|148985364|ref|ZP_01818569.1| DNA repair protein RadA [Streptococcus pneumoniae SP3-BS71]
gi|148986209|ref|ZP_01819161.1| DNA repair protein RadA [Streptococcus pneumoniae SP3-BS71]
gi|148987741|ref|ZP_01819204.1| DNA repair protein RadA [Streptococcus pneumoniae SP6-BS73]
gi|149004176|ref|ZP_01828973.1| DNA repair protein RadA [Streptococcus pneumoniae SP14-BS69]
gi|149023462|ref|ZP_01836051.1| DNA repair protein RadA [Streptococcus pneumoniae SP23-BS72]
gi|168483674|ref|ZP_02708626.1| DNA repair protein RadA [Streptococcus pneumoniae CDC1873-00]
gi|168486726|ref|ZP_02711234.1| DNA repair protein RadA [Streptococcus pneumoniae CDC1087-00]
gi|168493716|ref|ZP_02717859.1| DNA repair protein RadA [Streptococcus pneumoniae CDC3059-06]
gi|194397801|ref|YP_002036745.1| DNA repair protein RadA [Streptococcus pneumoniae G54]
gi|225857886|ref|YP_002739396.1| DNA repair protein RadA [Streptococcus pneumoniae 70585]
gi|237650018|ref|ZP_04524270.1| DNA repair protein RadA [Streptococcus pneumoniae CCRI 1974]
gi|237822607|ref|ZP_04598452.1| DNA repair protein RadA [Streptococcus pneumoniae CCRI 1974M2]
gi|417685513|ref|ZP_12334793.1| DNA repair protein RadA [Streptococcus pneumoniae GA41301]
gi|417692968|ref|ZP_12342157.1| DNA repair protein RadA [Streptococcus pneumoniae GA47901]
gi|417695157|ref|ZP_12344339.1| DNA repair protein RadA [Streptococcus pneumoniae GA47368]
gi|418072917|ref|ZP_12710180.1| DNA repair protein RadA [Streptococcus pneumoniae GA11184]
gi|418075158|ref|ZP_12712400.1| DNA repair protein RadA [Streptococcus pneumoniae GA47502]
gi|418077583|ref|ZP_12714807.1| DNA repair protein RadA [Streptococcus pneumoniae 4027-06]
gi|418079738|ref|ZP_12716954.1| DNA repair protein RadA [Streptococcus pneumoniae 6735-05]
gi|418086244|ref|ZP_12723417.1| DNA repair protein RadA [Streptococcus pneumoniae GA47033]
gi|418088444|ref|ZP_12725605.1| DNA repair protein RadA [Streptococcus pneumoniae GA43265]
gi|418090660|ref|ZP_12727805.1| DNA repair protein RadA [Streptococcus pneumoniae GA44452]
gi|418097453|ref|ZP_12734555.1| DNA repair protein RadA [Streptococcus pneumoniae 6901-05]
gi|418101736|ref|ZP_12738813.1| DNA repair protein RadA [Streptococcus pneumoniae NP070]
gi|418104108|ref|ZP_12741169.1| DNA repair protein RadA [Streptococcus pneumoniae GA44500]
gi|418106487|ref|ZP_12743534.1| DNA repair protein RadA [Streptococcus pneumoniae GA41410]
gi|418109003|ref|ZP_12746033.1| DNA repair protein RadA [Streptococcus pneumoniae GA49447]
gi|418113632|ref|ZP_12750625.1| DNA repair protein RadA [Streptococcus pneumoniae 5787-06]
gi|418115810|ref|ZP_12752788.1| DNA repair protein RadA [Streptococcus pneumoniae 6963-05]
gi|418120151|ref|ZP_12757099.1| DNA repair protein RadA [Streptococcus pneumoniae GA44194]
gi|418129231|ref|ZP_12766115.1| DNA repair protein RadA [Streptococcus pneumoniae GA07643]
gi|418133762|ref|ZP_12770622.1| DNA repair protein RadA [Streptococcus pneumoniae GA11426]
gi|418142829|ref|ZP_12779632.1| DNA repair protein RadA [Streptococcus pneumoniae GA13494]
gi|418145261|ref|ZP_12782049.1| DNA repair protein RadA [Streptococcus pneumoniae GA13637]
gi|418159529|ref|ZP_12796228.1| DNA repair protein RadA [Streptococcus pneumoniae GA17227]
gi|418161089|ref|ZP_12797780.1| DNA repair protein RadA [Streptococcus pneumoniae GA17328]
gi|418165634|ref|ZP_12802292.1| DNA repair protein RadA [Streptococcus pneumoniae GA17971]
gi|418167945|ref|ZP_12804593.1| DNA repair protein RadA [Streptococcus pneumoniae GA19077]
gi|418172430|ref|ZP_12809044.1| DNA repair protein RadA [Streptococcus pneumoniae GA41277]
gi|418174841|ref|ZP_12811439.1| DNA repair protein RadA [Streptococcus pneumoniae GA41437]
gi|418183824|ref|ZP_12820374.1| DNA repair protein RadA [Streptococcus pneumoniae GA47283]
gi|418186050|ref|ZP_12822581.1| DNA repair protein RadA [Streptococcus pneumoniae GA47360]
gi|418201316|ref|ZP_12837751.1| DNA repair protein RadA [Streptococcus pneumoniae GA52306]
gi|418215514|ref|ZP_12842240.1| DNA repair protein RadA [Streptococcus pneumoniae
Netherlands15B-37]
gi|418217794|ref|ZP_12844464.1| DNA repair protein RadA [Streptococcus pneumoniae NP127]
gi|418220819|ref|ZP_12847473.1| DNA repair protein RadA [Streptococcus pneumoniae GA47751]
gi|418228767|ref|ZP_12855378.1| DNA repair protein RadA [Streptococcus pneumoniae EU-NP01]
gi|418231178|ref|ZP_12857767.1| DNA repair protein RadA [Streptococcus pneumoniae GA07228]
gi|418235475|ref|ZP_12862044.1| DNA repair protein RadA [Streptococcus pneumoniae GA19690]
gi|418237620|ref|ZP_12864179.1| DNA repair protein RadA [Streptococcus pneumoniae
NorthCarolina6A-23]
gi|419421909|ref|ZP_13962129.1| DNA repair protein RadA [Streptococcus pneumoniae GA43264]
gi|419430484|ref|ZP_13970631.1| DNA repair protein RadA [Streptococcus pneumoniae EU-NP05]
gi|419432675|ref|ZP_13972797.1| DNA repair protein RadA [Streptococcus pneumoniae GA40183]
gi|419439284|ref|ZP_13979342.1| DNA repair protein RadA [Streptococcus pneumoniae GA40410]
gi|419441471|ref|ZP_13981508.1| DNA repair protein RadA [Streptococcus pneumoniae GA13224]
gi|419454449|ref|ZP_13994412.1| DNA repair protein RadA [Streptococcus pneumoniae EU-NP04]
gi|419456621|ref|ZP_13996570.1| DNA repair protein RadA [Streptococcus pneumoniae GA02254]
gi|419458900|ref|ZP_13998836.1| DNA repair protein RadA [Streptococcus pneumoniae GA02270]
gi|419461173|ref|ZP_14001091.1| DNA repair protein RadA [Streptococcus pneumoniae GA02714]
gi|419463485|ref|ZP_14003381.1| DNA repair protein RadA [Streptococcus pneumoniae GA04175]
gi|419467961|ref|ZP_14007834.1| DNA repair protein RadA [Streptococcus pneumoniae GA06083]
gi|419474409|ref|ZP_14014251.1| DNA repair protein RadA [Streptococcus pneumoniae GA14688]
gi|419476689|ref|ZP_14016515.1| DNA repair protein RadA [Streptococcus pneumoniae GA18068]
gi|419478948|ref|ZP_14018761.1| DNA repair protein RadA [Streptococcus pneumoniae GA19101]
gi|419485509|ref|ZP_14025276.1| DNA repair protein RadA [Streptococcus pneumoniae GA44128]
gi|419487816|ref|ZP_14027570.1| DNA repair protein RadA [Streptococcus pneumoniae GA44386]
gi|419490026|ref|ZP_14029768.1| DNA repair protein RadA [Streptococcus pneumoniae GA47179]
gi|419492197|ref|ZP_14031925.1| DNA repair protein RadA [Streptococcus pneumoniae GA47210]
gi|419494382|ref|ZP_14034102.1| DNA repair protein RadA [Streptococcus pneumoniae GA47461]
gi|419496474|ref|ZP_14036186.1| DNA repair protein RadA [Streptococcus pneumoniae GA47522]
gi|419498641|ref|ZP_14038341.1| DNA repair protein RadA [Streptococcus pneumoniae GA47597]
gi|419509377|ref|ZP_14049022.1| DNA repair protein RadA [Streptococcus pneumoniae NP141]
gi|421205448|ref|ZP_15662517.1| DNA repair protein RadA [Streptococcus pneumoniae 2090008]
gi|421207913|ref|ZP_15664941.1| DNA repair protein RadA [Streptococcus pneumoniae 2070005]
gi|421210044|ref|ZP_15667038.1| DNA repair protein RadA [Streptococcus pneumoniae 2070035]
gi|421214034|ref|ZP_15670985.1| DNA repair protein RadA [Streptococcus pneumoniae 2070108]
gi|421214300|ref|ZP_15671237.1| DNA repair protein RadA [Streptococcus pneumoniae 2070109]
gi|421223895|ref|ZP_15680643.1| DNA repair protein RadA [Streptococcus pneumoniae 2070768]
gi|421226200|ref|ZP_15682917.1| DNA repair protein RadA [Streptococcus pneumoniae 2072047]
gi|421228717|ref|ZP_15685396.1| DNA repair protein RadA [Streptococcus pneumoniae 2061376]
gi|421230860|ref|ZP_15687511.1| DNA repair protein RadA [Streptococcus pneumoniae 2080076]
gi|421233094|ref|ZP_15689719.1| DNA repair protein RadA [Streptococcus pneumoniae 2061617]
gi|421235115|ref|ZP_15691728.1| DNA repair protein RadA [Streptococcus pneumoniae 2061617]
gi|421235224|ref|ZP_15691825.1| DNA repair protein RadA [Streptococcus pneumoniae 2071004]
gi|421241857|ref|ZP_15698389.1| DNA repair protein RadA [Streptococcus pneumoniae 2081074]
gi|421246201|ref|ZP_15702692.1| DNA repair protein RadA [Streptococcus pneumoniae 2082170]
gi|421248400|ref|ZP_15704864.1| DNA repair protein RadA [Streptococcus pneumoniae 2082239]
gi|421274010|ref|ZP_15724844.1| DNA repair protein RadA [Streptococcus pneumoniae GA52612]
gi|15457555|gb|AAK98829.1| DNA repair: sensitivity to gamma and UV radiation [Streptococcus
pneumoniae R6]
gi|116076819|gb|ABJ54539.1| DNA repair protein RadA [Streptococcus pneumoniae D39]
gi|147757838|gb|EDK64849.1| DNA repair protein RadA [Streptococcus pneumoniae SP14-BS69]
gi|147921823|gb|EDK72951.1| DNA repair protein RadA [Streptococcus pneumoniae SP3-BS71]
gi|147922322|gb|EDK73442.1| DNA repair protein RadA [Streptococcus pneumoniae SP3-BS71]
gi|147926205|gb|EDK77278.1| DNA repair protein RadA [Streptococcus pneumoniae SP6-BS73]
gi|147929785|gb|EDK80775.1| DNA repair protein RadA [Streptococcus pneumoniae SP23-BS72]
gi|172042959|gb|EDT51005.1| DNA repair protein RadA [Streptococcus pneumoniae CDC1873-00]
gi|183570304|gb|EDT90832.1| DNA repair protein RadA [Streptococcus pneumoniae CDC1087-00]
gi|183576031|gb|EDT96559.1| DNA repair protein RadA [Streptococcus pneumoniae CDC3059-06]
gi|194357468|gb|ACF55916.1| DNA repair protein RadA [Streptococcus pneumoniae G54]
gi|225720045|gb|ACO15899.1| DNA repair protein RadA [Streptococcus pneumoniae 70585]
gi|332077331|gb|EGI87792.1| DNA repair protein RadA [Streptococcus pneumoniae GA41301]
gi|332204051|gb|EGJ18116.1| DNA repair protein RadA [Streptococcus pneumoniae GA47901]
gi|332205055|gb|EGJ19118.1| DNA repair protein RadA [Streptococcus pneumoniae GA47368]
gi|353748605|gb|EHD29256.1| DNA repair protein RadA [Streptococcus pneumoniae 4027-06]
gi|353751172|gb|EHD31804.1| DNA repair protein RadA [Streptococcus pneumoniae GA47502]
gi|353752455|gb|EHD33080.1| DNA repair protein RadA [Streptococcus pneumoniae GA11184]
gi|353754057|gb|EHD34670.1| DNA repair protein RadA [Streptococcus pneumoniae 6735-05]
gi|353760303|gb|EHD40880.1| DNA repair protein RadA [Streptococcus pneumoniae GA47033]
gi|353764185|gb|EHD44734.1| DNA repair protein RadA [Streptococcus pneumoniae GA43265]
gi|353766033|gb|EHD46573.1| DNA repair protein RadA [Streptococcus pneumoniae GA44452]
gi|353771609|gb|EHD52116.1| DNA repair protein RadA [Streptococcus pneumoniae 6901-05]
gi|353777448|gb|EHD57920.1| DNA repair protein RadA [Streptococcus pneumoniae NP070]
gi|353780077|gb|EHD60539.1| DNA repair protein RadA [Streptococcus pneumoniae GA44500]
gi|353782049|gb|EHD62487.1| DNA repair protein RadA [Streptococcus pneumoniae GA41410]
gi|353785836|gb|EHD66253.1| DNA repair protein RadA [Streptococcus pneumoniae GA49447]
gi|353788296|gb|EHD68693.1| DNA repair protein RadA [Streptococcus pneumoniae 5787-06]
gi|353792801|gb|EHD73172.1| DNA repair protein RadA [Streptococcus pneumoniae 6963-05]
gi|353794706|gb|EHD75058.1| DNA repair protein RadA [Streptococcus pneumoniae GA44194]
gi|353802523|gb|EHD82815.1| DNA repair protein RadA [Streptococcus pneumoniae GA07643]
gi|353810572|gb|EHD90822.1| DNA repair protein RadA [Streptococcus pneumoniae GA13494]
gi|353817206|gb|EHD97411.1| DNA repair protein RadA [Streptococcus pneumoniae GA13637]
gi|353821262|gb|EHE01438.1| DNA repair protein RadA [Streptococcus pneumoniae GA17227]
gi|353830679|gb|EHE10808.1| DNA repair protein RadA [Streptococcus pneumoniae GA17328]
gi|353831729|gb|EHE11852.1| DNA repair protein RadA [Streptococcus pneumoniae GA17971]
gi|353837553|gb|EHE17635.1| DNA repair protein RadA [Streptococcus pneumoniae GA19077]
gi|353839129|gb|EHE19203.1| DNA repair protein RadA [Streptococcus pneumoniae GA41277]
gi|353843401|gb|EHE23445.1| DNA repair protein RadA [Streptococcus pneumoniae GA41437]
gi|353852845|gb|EHE32830.1| DNA repair protein RadA [Streptococcus pneumoniae GA47283]
gi|353853872|gb|EHE33852.1| DNA repair protein RadA [Streptococcus pneumoniae GA47360]
gi|353869978|gb|EHE49855.1| DNA repair protein RadA [Streptococcus pneumoniae GA52306]
gi|353874420|gb|EHE54275.1| DNA repair protein RadA [Streptococcus pneumoniae
Netherlands15B-37]
gi|353875742|gb|EHE55592.1| DNA repair protein RadA [Streptococcus pneumoniae GA47751]
gi|353877750|gb|EHE57591.1| DNA repair protein RadA [Streptococcus pneumoniae NP127]
gi|353888844|gb|EHE68616.1| DNA repair protein RadA [Streptococcus pneumoniae GA07228]
gi|353891205|gb|EHE70961.1| DNA repair protein RadA [Streptococcus pneumoniae EU-NP01]
gi|353893404|gb|EHE73149.1| DNA repair protein RadA [Streptococcus pneumoniae GA19690]
gi|353895305|gb|EHE75043.1| DNA repair protein RadA [Streptococcus pneumoniae
NorthCarolina6A-23]
gi|353903749|gb|EHE79263.1| DNA repair protein RadA [Streptococcus pneumoniae GA11426]
gi|379533307|gb|EHY98520.1| DNA repair protein RadA [Streptococcus pneumoniae GA02254]
gi|379533772|gb|EHY98984.1| DNA repair protein RadA [Streptococcus pneumoniae GA02270]
gi|379535209|gb|EHZ00413.1| DNA repair protein RadA [Streptococcus pneumoniae GA02714]
gi|379540764|gb|EHZ05935.1| DNA repair protein RadA [Streptococcus pneumoniae GA04175]
gi|379548231|gb|EHZ13363.1| DNA repair protein RadA [Streptococcus pneumoniae GA06083]
gi|379555863|gb|EHZ20926.1| DNA repair protein RadA [Streptococcus pneumoniae GA13224]
gi|379561916|gb|EHZ26930.1| DNA repair protein RadA [Streptococcus pneumoniae GA14688]
gi|379567488|gb|EHZ32471.1| DNA repair protein RadA [Streptococcus pneumoniae GA18068]
gi|379574282|gb|EHZ39225.1| DNA repair protein RadA [Streptococcus pneumoniae GA19101]
gi|379578797|gb|EHZ43705.1| DNA repair protein RadA [Streptococcus pneumoniae GA40183]
gi|379582383|gb|EHZ47264.1| DNA repair protein RadA [Streptococcus pneumoniae GA40410]
gi|379588418|gb|EHZ53258.1| DNA repair protein RadA [Streptococcus pneumoniae GA44128]
gi|379590910|gb|EHZ55746.1| DNA repair protein RadA [Streptococcus pneumoniae GA43264]
gi|379590979|gb|EHZ55814.1| DNA repair protein RadA [Streptococcus pneumoniae GA44386]
gi|379595894|gb|EHZ60699.1| DNA repair protein RadA [Streptococcus pneumoniae GA47210]
gi|379596306|gb|EHZ61110.1| DNA repair protein RadA [Streptococcus pneumoniae GA47179]
gi|379596746|gb|EHZ61549.1| DNA repair protein RadA [Streptococcus pneumoniae GA47461]
gi|379602599|gb|EHZ67369.1| DNA repair protein RadA [Streptococcus pneumoniae GA47522]
gi|379603529|gb|EHZ68297.1| DNA repair protein RadA [Streptococcus pneumoniae GA47597]
gi|379630890|gb|EHZ95470.1| DNA repair protein RadA [Streptococcus pneumoniae EU-NP04]
gi|379632656|gb|EHZ97229.1| DNA repair protein RadA [Streptococcus pneumoniae EU-NP05]
gi|379634563|gb|EHZ99127.1| DNA repair protein RadA [Streptococcus pneumoniae NP141]
gi|395576426|gb|EJG36981.1| DNA repair protein RadA [Streptococcus pneumoniae 2070035]
gi|395577434|gb|EJG37978.1| DNA repair protein RadA [Streptococcus pneumoniae 2070005]
gi|395578220|gb|EJG38744.1| DNA repair protein RadA [Streptococcus pneumoniae 2070108]
gi|395578376|gb|EJG38897.1| DNA repair protein RadA [Streptococcus pneumoniae 2090008]
gi|395583481|gb|EJG43925.1| DNA repair protein RadA [Streptococcus pneumoniae 2070109]
gi|395592102|gb|EJG52391.1| DNA repair protein RadA [Streptococcus pneumoniae 2070768]
gi|395598394|gb|EJG58596.1| DNA repair protein RadA [Streptococcus pneumoniae 2080076]
gi|395598745|gb|EJG58945.1| DNA repair protein RadA [Streptococcus pneumoniae 2072047]
gi|395598906|gb|EJG59104.1| DNA repair protein RadA [Streptococcus pneumoniae 2061376]
gi|395599080|gb|EJG59263.1| DNA repair protein RadA [Streptococcus pneumoniae 2061617]
gi|395603806|gb|EJG63939.1| DNA repair protein RadA [Streptococcus pneumoniae 2061617]
gi|395604143|gb|EJG64275.1| DNA repair protein RadA [Streptococcus pneumoniae 2071004]
gi|395612283|gb|EJG72327.1| DNA repair protein RadA [Streptococcus pneumoniae 2081074]
gi|395615947|gb|EJG75961.1| DNA repair protein RadA [Streptococcus pneumoniae 2082239]
gi|395616320|gb|EJG76331.1| DNA repair protein RadA [Streptococcus pneumoniae 2082170]
gi|395875845|gb|EJG86922.1| DNA repair protein RadA [Streptococcus pneumoniae GA52612]
gi|429317063|emb|CCP36801.1| putative DNA repair protein [Streptococcus pneumoniae SPN034156]
gi|429318600|emb|CCP31780.1| putative DNA repair protein [Streptococcus pneumoniae SPN034183]
gi|429320420|emb|CCP33765.1| putative DNA repair protein [Streptococcus pneumoniae SPN994039]
gi|429322240|emb|CCP29806.1| putative DNA repair protein [Streptococcus pneumoniae SPN994038]
Length = 420
Score = 333 bits (855), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 185/421 (43%), Positives = 268/421 (63%), Gaps = 26/421 (6%)
Query: 163 KPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKST 222
KP ++ V + VN+ +++ E RVLGGG+VPGSLVLIGGDPG+GKST
Sbjct: 22 KPMKLAEVTSINVNRTKTEME-----------EFNRVLGGGVVPGSLVLIGGDPGIGKST 70
Query: 223 LLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVE 282
LLLQ++ ++ V V+YVSGEES +QI RA+R+ E +LY+ T+++ +
Sbjct: 71 LLLQVSTQLSQV------GTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSVRA 124
Query: 283 KVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKS 342
+V+ + P LIIDSIQT+ ++G G + QV+E T+ L++ AK NI + + GHVTK
Sbjct: 125 EVERIQPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELMQLAKTNNIAIFIVGHVTKE 184
Query: 343 GDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPS 402
G +AGPR+LEH+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS
Sbjct: 185 GTLAGPRMLEHMVDTVLYFEGERHHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPS 244
Query: 403 KIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMI 460
++FL E+ + G ++ V M+G+R L E+QAL R G+ +RA +I
Sbjct: 245 QVFLEERLDGA---TGSSIVVTMEGTRPILAEVQALVTPTMFGNAKRTTTGLDFNRASLI 301
Query: 461 ISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIG 520
++VL K+AGL LQ +L GV L E A DLAVA AI SS+ + P F+GE+G
Sbjct: 302 MAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKPTNPQECFVGELG 361
Query: 521 LGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGF-EQMEFIGCKNLKEVINVV 579
L GE+R V+R+E+R++ AKLG+ K VPK+ SL + ++++ IG ++EV+ V
Sbjct: 362 LTGEIRRVNRIEQRINEAAKLGFTKIYVPKN---SLTGITLPKEIQVIGVTTIQEVLKKV 418
Query: 580 F 580
F
Sbjct: 419 F 419
>gi|304315909|ref|YP_003851054.1| DNA repair protein RadA [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|433654067|ref|YP_007297775.1| DNA repair protein RadA [Thermoanaerobacterium
thermosaccharolyticum M0795]
gi|302777411|gb|ADL67970.1| DNA repair protein RadA [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|433292256|gb|AGB18078.1| DNA repair protein RadA [Thermoanaerobacterium
thermosaccharolyticum M0795]
Length = 448
Score = 333 bits (855), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 183/475 (38%), Positives = 288/475 (60%), Gaps = 37/475 (7%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQP 169
K +T +VC CG+ +W G C C+ + E D+ Q+ L K E ++
Sbjct: 2 KKEKTKFVCQQCGFESAKWMGRCPNCDEWNSFVEEVEKEDDKKS--QQGLLTSKVELLKD 59
Query: 170 VRLLE---VNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQ 226
V + + G+ + D RVLGGG+V GSLVLIGG+PG+GKST+LLQ
Sbjct: 60 VEAKDEDRIKTGIGEFD--------------RVLGGGIVQGSLVLIGGEPGIGKSTMLLQ 105
Query: 227 MAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQP 286
++ I+++ + V+YVSGEES QI RADR++ ++++ + T+I ++ + ++
Sbjct: 106 VSDIMSNF------TKVLYVSGEESSRQIKLRADRIIGGKQDIYFLAETNINNVEKHIEK 159
Query: 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIA 346
+SP +IIDSIQT+Y G + QV++ T L+R AK+ I + GHVTK G IA
Sbjct: 160 ISPGFMIIDSIQTMYAEESTTIPGSVSQVRQVTQHLMRLAKQNGITTFIIGHVTKEGSIA 219
Query: 347 GPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFL 406
GPRVLEH+VD VLY EG++ S+R+LR+ KNRFGST+E+GVFEM GL+ V NPS++ L
Sbjct: 220 GPRVLEHMVDTVLYFEGDRTQSFRILRAYKNRFGSTNEIGVFEMESQGLKEVKNPSEVLL 279
Query: 407 SEQHSDSEFLAGLAVAVIMDGSRSFLIEIQAL-CVSGSTVSRHVN-GIQASRADMIISVL 464
S + ++ GLAV M+G+R L+E+Q+L C + + R ++ GI ++ ++++V+
Sbjct: 280 SNRDLNA---PGLAVISSMEGTRPILLEVQSLICHTNFGLPRRMSTGIDYNKFVLLLAVV 336
Query: 465 MKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGE 524
K+ G+ L ++ ++LN+ G+ + E A DL + +A+ S +L PI N I F GE+GL GE
Sbjct: 337 EKKCGINLSQSDVYLNIAGGLKVQEPAADLGIVSAVMSGYLNVPISNDICFSGEVGLTGE 396
Query: 525 LRMVSRMEKRVSTVAKLGYRKCIVP-KSAEKSLATLGFEQMEFIGCKNLKEVINV 578
+R VS +E+R+S K+G++ VP EK+ E + I KN+ E++++
Sbjct: 397 VRAVSNLERRISEAKKMGFKTIFVPYMKMEKT------EGINVIRIKNIIELMDI 445
>gi|312867513|ref|ZP_07727721.1| DNA repair protein RadA [Streptococcus parasanguinis F0405]
gi|311096919|gb|EFQ55155.1| DNA repair protein RadA [Streptococcus parasanguinis F0405]
Length = 407
Score = 333 bits (855), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 186/419 (44%), Positives = 266/419 (63%), Gaps = 21/419 (5%)
Query: 165 EEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLL 224
E+ +P++L EV + + E RVLGGG+VPGSLVLIGGDPG+GKSTLL
Sbjct: 6 EKTKPMKLAEVT------SINVHRTKTEMEEFNRVLGGGVVPGSLVLIGGDPGIGKSTLL 59
Query: 225 LQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKV 284
LQ++ ++ V V+YVSGEES +QI RA+R+ E +LY+ T+++ + +V
Sbjct: 60 LQVSTQLSQV------GTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSVRAEV 113
Query: 285 QPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGD 344
+ + P LIIDSIQT+ ++G G + QV+E T+ L++ AK NI + + GHVTK G
Sbjct: 114 ERIQPNFLIIDSIQTIMSPEISGVQGSVSQVREVTAELMQLAKTNNIAIFIVGHVTKEGT 173
Query: 345 IAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKI 404
+AGPR+LEH+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS++
Sbjct: 174 LAGPRMLEHMVDTVLYFEGERHHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQV 233
Query: 405 FLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIIS 462
FL E+ + G ++ V M+G+R L E+QAL R G+ +RA +I++
Sbjct: 234 FLEERLDGA---TGSSIVVTMEGTRPILAEVQALVTPTMFGNAKRTTTGLDFNRASLIMA 290
Query: 463 VLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLG 522
VL K+AGL LQ +L GV L E A DLAVA AI SS+ + P F+GE+GL
Sbjct: 291 VLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKPTNPQECFVGELGLT 350
Query: 523 GELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLAT-LGFEQMEFIGCKNLKEVINVVF 580
GE+R V+R+E+R++ AKLG+ K VPK++ + T LG ++ +G L EV+ VF
Sbjct: 351 GEVRRVNRIEQRINEAAKLGFTKIYVPKNSLTGITTPLG---IQVVGVSTLSEVLKKVF 406
>gi|431792440|ref|YP_007219345.1| DNA repair protein RadA [Desulfitobacterium dichloroeliminans LMG
P-21439]
gi|430782666|gb|AGA67949.1| DNA repair protein RadA [Desulfitobacterium dichloroeliminans LMG
P-21439]
Length = 449
Score = 333 bits (855), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 198/471 (42%), Positives = 280/471 (59%), Gaps = 31/471 (6%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T + C CG +W G C C T+ +++R+ + V+ L
Sbjct: 5 KTRFFCQACGQESARWLGKCPGCGEWNTLVE---------EILERSPSKRTSTGVRATPL 55
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
E+ Q + R+ SG E+ RVLGGG+VPGS VL+GG+PG+GKSTLLLQ A ++A
Sbjct: 56 TEIKL---QEEERVS-SGC--QELNRVLGGGIVPGSFVLLGGEPGIGKSTLLLQTAGLLA 109
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
D V+Y+SGEES +QI RA+R+ I L + + T ++ I + + P L
Sbjct: 110 KKMD------VLYISGEESEKQIKLRAERLGITESHLHILTETRLDVIRDVAIAMKPGLL 163
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
I+DSIQT+ L + +AG + QV+E + L+R AK+ IP+ L GHVTK G IAGPRVLE
Sbjct: 164 IVDSIQTMVLEELQAAAGSVSQVREGAAFLMRLAKEEEIPIFLVGHVTKEGAIAGPRVLE 223
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
HIVD VLY EG++ YRLLR+VKNRFGST+E+GVFEM + GL V NPS++FL E S
Sbjct: 224 HIVDTVLYFEGDRHHVYRLLRAVKNRFGSTNEIGVFEMHEDGLIEVPNPSRVFLGENSST 283
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVS---RHVNGIQASRADMIISVLMKQAG 469
+ G +VAV+M+GSR L+EIQAL V+ +T R GI +R M+++VL K+ G
Sbjct: 284 A---PGSSVAVVMEGSRPLLVEIQAL-VTPTTYGPPRRTATGIDYNRVLMLLAVLDKKVG 339
Query: 470 LKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVS 529
L +F+N+ G+ + E DLA AAI SS + P+ AFIGE+GL GE+R ++
Sbjct: 340 FHLGAQDVFINIAGGIRIDEPGVDLACIAAIASSMRDRPLKR-YAFIGEVGLTGEVRGIA 398
Query: 530 RMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
++E RV KLG+ CI+P+ A G + I K ++E + +F
Sbjct: 399 QIENRVKEAMKLGFEGCILPQV--NISAVKGTQSFTIIPVKTVEEAVQEMF 447
>gi|379731658|ref|YP_005323854.1| DNA repair protein RadA [Saprospira grandis str. Lewin]
gi|378577269|gb|AFC26270.1| DNA repair protein RadA [Saprospira grandis str. Lewin]
Length = 464
Score = 333 bits (855), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 182/474 (38%), Positives = 281/474 (59%), Gaps = 21/474 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKR----YSAGESDEGPVVQRTWLPQKPEEVQ 168
+ +VC++CG +W G C AC +++ + + + Q W ++ + +
Sbjct: 5 QKTFVCTECGNVSLKWEGRCSACGEWNSLQEEVTVKGSAKQEAKKATQGAWTQKRGRKQE 64
Query: 169 PVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMA 228
R + K R P E+ RVLGGG+V GS+VLIGG+PGVGKSTL+LQ+A
Sbjct: 65 HARPTHITKVQGDGTVRTPTDD---EELNRVLGGGIVSGSIVLIGGEPGVGKSTLMLQLA 121
Query: 229 AIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLS 288
L V+YVSGEES +QI RA+R+ + + FL + T++ +++ + L
Sbjct: 122 --------LSFSGKVLYVSGEESEQQIKMRAERLGLRDNDCFLMAETNLTNLLMQAATLG 173
Query: 289 PRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGP 348
P L++DSIQT+ + V G + QV+EC S L RFAK+TNIPV + GH+ K G IAGP
Sbjct: 174 PDVLVVDSIQTLSSQYVESPPGSVSQVRECASELQRFAKETNIPVFVIGHINKDGAIAGP 233
Query: 349 RVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSE 408
++LEHIVD VL EG++ ++R+LR++KNRFGST ELG++EM GL+ VSNPS++ L++
Sbjct: 234 KLLEHIVDVVLQFEGDRNYTHRILRTIKNRFGSTAELGIYEMQGRGLREVSNPSELLLTQ 293
Query: 409 QHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMK 466
+ D L+G A+ ++G R LIEIQAL + S+ R G R M+++VL K
Sbjct: 294 KEED---LSGSAITATVEGIRPMLIEIQALVSTSVFSSPQRSATGFDLRRLSMLLAVLEK 350
Query: 467 QAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELR 526
+ G + N +FLNV G+ +++ A D+AV AA+ SS + +P+ + F GEIGL GE+R
Sbjct: 351 RCGFQFGNNDVFLNVAGGLKVSDPAIDMAVVAALLSSLEDVAMPSNVCFAGEIGLSGEIR 410
Query: 527 MVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
V R+E+R+ +LG+ K V K K + ++ +E + ++++ +F
Sbjct: 411 SVQRIEQRIQEANRLGFEKIYVSKFNMKGIDPANYD-IEIVPLSKVEQLFEDLF 463
>gi|254804660|ref|YP_003082881.1| DNA repair protein RadA [Neisseria meningitidis alpha14]
gi|385854927|ref|YP_005901440.1| DNA repair protein RadA [Neisseria meningitidis M01-240355]
gi|254668202|emb|CBA04946.1| DNA repair protein [Neisseria meningitidis alpha14]
gi|325203868|gb|ADY99321.1| DNA repair protein RadA [Neisseria meningitidis M01-240355]
Length = 459
Score = 333 bits (854), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 191/476 (40%), Positives = 278/476 (58%), Gaps = 32/476 (6%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKP--EEV 167
K +T + C++CG T +W G C C T++ A + Q +W + +
Sbjct: 3 KTLKTLYQCTECGGTSPKWQGKCPHCGEWNTLQESLAAPEPKNARFQ-SWAADTSTVQSL 61
Query: 168 QPVRLLEVNK---GMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLL 224
V EV + GM +LD RVLGGGLV G+++L+GGDPG+GKSTLL
Sbjct: 62 SSVTATEVPRNPTGMGELD--------------RVLGGGLVDGAVILLGGDPGIGKSTLL 107
Query: 225 LQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKV 284
LQ + + + V+YVSGEES +Q+ RA R+ + TE + L + +E I +
Sbjct: 108 LQT------ITKMAQSRKVLYVSGEESAQQVALRAQRLELPTEGVNLLAEIRMEAIQTAL 161
Query: 285 QPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGD 344
+ P ++IDSIQT+Y + + G + QV+EC + L R AK+ I ++L GHVTK G
Sbjct: 162 KQHQPEVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRMAKQMGIAMILVGHVTKDGA 221
Query: 345 IAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKI 404
IAGPRVLEH+VD VLY EG++ S+YR++R++KNRFG+ +ELGVF M++ GL+ VSNPS I
Sbjct: 222 IAGPRVLEHMVDTVLYFEGDQHSNYRMIRAIKNRFGAANELGVFAMTENGLKGVSNPSAI 281
Query: 405 FLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIIS 462
FL+ D+ G V V +GSR L+EIQAL G T R G++ +R M+++
Sbjct: 282 FLASYRDDT---PGSCVLVTQEGSRPLLVEIQALVDDAHGFTPKRLTVGLEQNRLAMLLA 338
Query: 463 VLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLG 522
VL + G+ + +FLN V GV + E A DLAV A+ SSF P+P GEIGL
Sbjct: 339 VLNRHGGIACFDQDVFLNAVGGVKIGEPAADLAVILAMLSSFRNRPMPEKTVVFGEIGLS 398
Query: 523 GELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINV 578
GE+R V+R ++R+ KLG+++ IVPK+ A F ++ G +L+E I++
Sbjct: 399 GEVRPVARGQERLKEAEKLGFKRAIVPKANMPRNAK-EFPNLKIYGVSSLQEAIDI 453
>gi|78485338|ref|YP_391263.1| DNA repair protein RadA [Thiomicrospira crunogena XCL-2]
gi|78363624|gb|ABB41589.1| DNA repair protein RadA [Thiomicrospira crunogena XCL-2]
Length = 457
Score = 333 bits (854), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 191/483 (39%), Positives = 282/483 (58%), Gaps = 41/483 (8%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSA-----------GESDEGPVVQRT 158
K + +VC++CG QW G C AC T+K + V+ T
Sbjct: 3 KKIKMAYVCTECGADFAQWQGQCNACHEWNTLKEFKVSASKSKSSVSHATGSYAGAVEST 62
Query: 159 WLPQKPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGV 218
L V V L EV + L +E+ RVLGGG+VPGS+VLIGGDPGV
Sbjct: 63 VL-----SVNEVELSEVPRMDSSL-----------SELDRVLGGGIVPGSVVLIGGDPGV 106
Query: 219 GKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIE 278
GKS+LLLQ++ L + V+YV+GEES++Q+ RA RM + ++L L + TD+E
Sbjct: 107 GKSSLLLQVSC------QLSQSQKVLYVTGEESLQQVAMRAKRMGLPEDKLRLLTETDVE 160
Query: 279 DIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGH 338
+V Q P +++DSIQT+ L V+ +AGG+ QV+E + L R+AK+ + + L GH
Sbjct: 161 SVVMAAQNEKPAIMVVDSIQTMQLSEVSSAAGGVSQVRESAAFLTRYAKQNQVMIFLVGH 220
Query: 339 VTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAV 398
VTKSG++AGPRVLEHIVD VL++EG+ S +R LR++KNRFG+ +ELGVF M+ G++ +
Sbjct: 221 VTKSGEVAGPRVLEHIVDTVLFLEGQSDSRFRTLRAIKNRFGAVNELGVFAMTDKGMKQI 280
Query: 399 SNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASR 456
NPS IFLS S G V V+ +GSR L+EIQAL R G++ +R
Sbjct: 281 KNPSAIFLSRADEPS---PGSVVMVLWEGSRPLLVEIQALVDDSPYGAPKRVTVGLEYNR 337
Query: 457 ADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFI 516
M+++VL + AG++ + +++NVV GV +TET+ DLAV +AI SS + +
Sbjct: 338 MAMLLAVLHRHAGVQAGDQDVYVNVVGGVKVTETSADLAVLSAIVSSLKNKTLSQDLIIF 397
Query: 517 GEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVI 576
GE+GL GE+R VS ++R+ AK G+++ IVP ++ G ME G L++ +
Sbjct: 398 GEVGLSGEIRPVSSGQERIFEAAKHGFKRAIVPNG---NIPKGGVAGMEVQGVSTLQQAL 454
Query: 577 NVV 579
+++
Sbjct: 455 DLI 457
>gi|339640179|ref|ZP_08661623.1| DNA repair protein RadA [Streptococcus sp. oral taxon 056 str.
F0418]
gi|339453448|gb|EGP66063.1| DNA repair protein RadA [Streptococcus sp. oral taxon 056 str.
F0418]
Length = 405
Score = 333 bits (854), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 185/421 (43%), Positives = 262/421 (62%), Gaps = 24/421 (5%)
Query: 163 KPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKST 222
+P ++ V ++VN+ ++D E RVLGGG+VPGSLVLIGGDPG+GKST
Sbjct: 7 RPMKLAEVTSIDVNRTKTEMD-----------EFNRVLGGGVVPGSLVLIGGDPGIGKST 55
Query: 223 LLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVE 282
LLLQ++ L V+YVSGEES EQI RA+R+ E +LY+ T++++I
Sbjct: 56 LLLQVST------QLSHQGTVLYVSGEESAEQIKLRAERLGDIDSEFYLYAETNMQNIRT 109
Query: 283 KVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKS 342
+++ + P LIIDSIQTV ++ G + QV+E T+ L++ AK NI + GH+TK
Sbjct: 110 EIEKIKPDFLIIDSIQTVMSPEISSVQGSVSQVREVTAELMQLAKTNNIATFIVGHMTKE 169
Query: 343 GDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPS 402
G +AGPR LEH+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS
Sbjct: 170 GTLAGPRTLEHMVDTVLYFEGERQHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVVNPS 229
Query: 403 KIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMI 460
++FL E+ + G ++ V M+G+R L E+QAL R G+ +RA +I
Sbjct: 230 EVFLEERLDGA---TGSSIVVTMEGTRPILAEVQALVTPTMFGNAKRTTTGLDFNRASLI 286
Query: 461 ISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIG 520
++VL K+AGL LQ +L GV L E A DLAVA AI SS+ + P FIGEIG
Sbjct: 287 MAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDLPTNPQECFIGEIG 346
Query: 521 LGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
L GE+R V+R+E+R++ AKLG+ K PK++ L + ++ IG + EV+ VF
Sbjct: 347 LTGEIRRVNRIEQRINEAAKLGFTKVYAPKNSLNGLKVP--DSIQVIGVTTIGEVLKKVF 404
Query: 581 T 581
+
Sbjct: 405 S 405
>gi|322391146|ref|ZP_08064618.1| DNA repair protein RadA [Streptococcus peroris ATCC 700780]
gi|321145899|gb|EFX41288.1| DNA repair protein RadA [Streptococcus peroris ATCC 700780]
Length = 420
Score = 333 bits (854), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 184/421 (43%), Positives = 268/421 (63%), Gaps = 24/421 (5%)
Query: 163 KPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKST 222
KP ++ V + VN+ +++ E RVLGGG+VPGSLVLIGGDPG+GKST
Sbjct: 22 KPMKLAEVTSINVNRTKTEME-----------EFNRVLGGGVVPGSLVLIGGDPGIGKST 70
Query: 223 LLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVE 282
LLLQ++ ++ V V+YVSGEES +QI RA+R+ E +LY+ T+++ +
Sbjct: 71 LLLQVSTQLSHV------GTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSVRS 124
Query: 283 KVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKS 342
+V+ + P LIIDSIQT+ ++G G + QV+E T+ L++ AK NI + + GHVTK
Sbjct: 125 EVERIQPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELMQLAKTNNIAIFIVGHVTKE 184
Query: 343 GDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPS 402
G +AGPR+LEH+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS
Sbjct: 185 GTLAGPRMLEHMVDTVLYFEGERHHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPS 244
Query: 403 KIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMI 460
++FL E+ + G ++ V M+G+R L E+QAL R G+ +RA +I
Sbjct: 245 QVFLEERLDGA---TGSSIVVTMEGTRPILAEVQALVTPTMFGNAKRTTTGLDFNRASLI 301
Query: 461 ISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIG 520
++VL K+AGL LQ +L GV L E A DLAVA AI SS+ + P F+GE+G
Sbjct: 302 MAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKPTNPQECFVGELG 361
Query: 521 LGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
L GE+R V+R+E+RV+ AKLG+ K VPK++ + ++++ IG ++EV+ VF
Sbjct: 362 LTGEIRRVNRIEQRVNEAAKLGFTKIYVPKNSLTGIKPP--KEIQVIGVTTIQEVLKKVF 419
Query: 581 T 581
+
Sbjct: 420 S 420
>gi|333896157|ref|YP_004470031.1| DNA repair protein RadA [Thermoanaerobacterium xylanolyticum LX-11]
gi|333111422|gb|AEF16359.1| DNA repair protein RadA [Thermoanaerobacterium xylanolyticum LX-11]
Length = 448
Score = 333 bits (854), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 180/472 (38%), Positives = 291/472 (61%), Gaps = 29/472 (6%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQP 169
K ++T ++C CG+ +W G C C+ + +SD +K +E
Sbjct: 2 KKDKTKFICQQCGFESTKWMGKCPNCDEWNSFVEEVVEDSD-----------KKSQEGIL 50
Query: 170 VRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAA 229
+E+ K ++ D +G+ E RVLGGG+V GSLVLIGG+PG+GKST+LLQ++
Sbjct: 51 TSKVELLKDIEAKDEDRIKTGI--GEFDRVLGGGVVKGSLVLIGGEPGIGKSTMLLQISD 108
Query: 230 IIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSP 289
++++ + V+Y+SGEES QI RADR++ +E++ + T+I ++ V+ +SP
Sbjct: 109 VMSNF------TKVLYISGEESSSQIKMRADRIIKGKQEVYFLAETNINNVERHVEKISP 162
Query: 290 RALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPR 349
+I+DSIQT+Y G + QV++ T LLR +K+ I V + GHVTK G IAGPR
Sbjct: 163 GFIIVDSIQTMYADESTTIPGSVSQVRQVTQHLLRLSKQNGITVFIIGHVTKEGSIAGPR 222
Query: 350 VLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQ 409
VLEH+VD VLY EG++ S+R+LR+ KNRFGST+E+GVFEM GL+ V NPS++ LS +
Sbjct: 223 VLEHMVDTVLYFEGDRTQSFRILRAYKNRFGSTNEIGVFEMESEGLKEVKNPSEVLLSGR 282
Query: 410 HSDSEFLAGLAVAVIMDGSRSFLIEIQAL-CVSGSTVSRHVN-GIQASRADMIISVLMKQ 467
++ GLAV M+G+R L+E+Q+L C + + R ++ GI ++ ++++VL K+
Sbjct: 283 DLNA---PGLAVISSMEGTRPILLEVQSLICHTNFGLPRRMSTGIDYNKFVLLLAVLEKK 339
Query: 468 AGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRM 527
G+ ++ ++LN+ G+ + E A DL + AA+ S +L PI N I F GE+GL GE+R
Sbjct: 340 CGINFSQSDVYLNIAGGLKVQEPAADLGIVAALISGYLNIPISNDICFSGEVGLIGEVRP 399
Query: 528 VSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVV 579
VS +E+R+S K+G++ +VP+ ++ + +++ KN+ E+ +V+
Sbjct: 400 VSNLERRISEAKKMGFKTIVVPQMKVENNYDMNIKKI-----KNIVELTDVI 446
>gi|157690870|ref|YP_001485332.1| DNA repair protein RadA [Bacillus pumilus SAFR-032]
gi|194017551|ref|ZP_03056162.1| DNA repair protein RadA [Bacillus pumilus ATCC 7061]
gi|157679628|gb|ABV60772.1| S16 family non-peptidase [Bacillus pumilus SAFR-032]
gi|194010823|gb|EDW20394.1| DNA repair protein RadA [Bacillus pumilus ATCC 7061]
Length = 439
Score = 333 bits (854), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 178/389 (45%), Positives = 255/389 (65%), Gaps = 18/389 (4%)
Query: 195 EVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQ 254
E RVLG G+V GSLVLIGGDPG+GKSTLLLQ++A ++D + V+Y+SGEES++Q
Sbjct: 59 EFNRVLGSGIVKGSLVLIGGDPGIGKSTLLLQVSAQLSDKNQ-----NVLYISGEESIKQ 113
Query: 255 IGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQ 314
RADR+ I + L + + TD+E I +Q + P +++DSIQTVY + + G + Q
Sbjct: 114 TKLRADRLGIKSTSLHVLAETDMEYITSAIQEMKPAFVVVDSIQTVYQSDITSAPGSVSQ 173
Query: 315 VKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRS 374
V+ECT+ L++ AK IP+ + GHVTK G IAGPR+LEH+VD VLY EGE+ ++R+LR+
Sbjct: 174 VRECTAQLMKIAKTNGIPIFIVGHVTKEGSIAGPRLLEHMVDTVLYFEGERHHTFRILRA 233
Query: 375 VKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIE 434
VKNRFGST+ELG+FEM + GL V NPS+IFL E+ S ++G V M+G+R L+E
Sbjct: 234 VKNRFGSTNELGIFEMREEGLTEVLNPSEIFLEER---SAGVSGSCVVASMEGTRPVLVE 290
Query: 435 IQALC--VSGSTVSRHVNGIQASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAG 492
IQAL S R G+ +R ++++VL K+ GL LQ +L V GV L E A
Sbjct: 291 IQALISPTSFGNPRRMATGLDHNRVSLLMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAI 350
Query: 493 DLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSA 552
DLA+A +I SSF + FIGE+GL GE+R VSR+E+RV AKLG+++ +P++
Sbjct: 351 DLAIAVSIASSFKDAAPHQADCFIGEVGLTGEVRRVSRIEQRVQEAAKLGFKRMFIPQA- 409
Query: 553 EKSLATLGFEQ---MEFIGCKNLKEVINV 578
G+++ +E +G +N+ E + +
Sbjct: 410 ----NIDGWKKPRGIELVGVENVAEALRI 434
>gi|325105746|ref|YP_004275400.1| DNA repair protein RadA [Pedobacter saltans DSM 12145]
gi|324974594|gb|ADY53578.1| DNA repair protein RadA [Pedobacter saltans DSM 12145]
Length = 460
Score = 333 bits (854), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 187/460 (40%), Positives = 280/460 (60%), Gaps = 44/460 (9%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGT-----MKRYSAGESD----EGPVVQRTWLPQK 163
++++ C CGY +W G C +C+ T +++ SAG D V R P K
Sbjct: 5 KSSYFCQSCGYESPKWLGKCPSCQQWNTFVEEVVEKKSAGIPDWRNTTHSTVSRANQPHK 64
Query: 164 PEEV---QPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGK 220
+E+ + RL+ +K E+ RVLGGG+V GSLVLIGG+PG+GK
Sbjct: 65 IQEIAYTEEHRLITPDK-----------------ELNRVLGGGIVGGSLVLIGGEPGIGK 107
Query: 221 STLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIAT-EELFLYSSTDIED 279
STL+LQ+A + ++ V+YVSGEES +QI RA+R++ + ++ + T ++
Sbjct: 108 STLMLQLALTLPNIK-------VLYVSGEESEQQIKLRAERILNNPFSDCYILTETSTQN 160
Query: 280 IVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHV 339
I ++++ L P ++IDSIQT++ + + G + QV+ECT+ LLRFAK++N PV L GH+
Sbjct: 161 IFKQIEILEPNIVVIDSIQTLHSAHMESTPGSVSQVRECTAELLRFAKESNTPVFLIGHI 220
Query: 340 TKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVS 399
TK G IAGP++LEH+VD VL EG++ YR+LR++KNRFGS ELG++EM GL+ VS
Sbjct: 221 TKDGMIAGPKILEHMVDTVLQFEGDRHHVYRILRAIKNRFGSAAELGIYEMQGSGLREVS 280
Query: 400 NPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS---TVSRHVNGIQASR 456
NPS+I LS + E L+G+ V+ M+G R LIE QAL VS S T R G R
Sbjct: 281 NPSEILLSLRE---EALSGVTVSATMEGMRPMLIETQAL-VSNSPYGTPQRSSTGFDTKR 336
Query: 457 ADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFI 516
+M+++VL K+ G KL +FLN+ G+ + + + DL + AAI SS + PI + I F
Sbjct: 337 MNMLLAVLEKRCGFKLGAKDVFLNIAGGIKIEDPSIDLGLIAAIISSHEDIPISHKICFA 396
Query: 517 GEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSL 556
E+GL GE+R V+R+E+R++ KLG+ + + K +K L
Sbjct: 397 AEVGLSGEIRAVTRIEQRIAEAEKLGFEQIFISKYNKKGL 436
>gi|307702829|ref|ZP_07639777.1| DNA repair protein RadA [Streptococcus oralis ATCC 35037]
gi|307623509|gb|EFO02498.1| DNA repair protein RadA [Streptococcus oralis ATCC 35037]
Length = 407
Score = 333 bits (854), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 184/420 (43%), Positives = 267/420 (63%), Gaps = 24/420 (5%)
Query: 163 KPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKST 222
KP ++ V + VN+ +++ E RVLGGG+VPGSLVLIGGDPG+GKST
Sbjct: 9 KPMKLAEVTSINVNRTKTEME-----------EFNRVLGGGVVPGSLVLIGGDPGIGKST 57
Query: 223 LLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVE 282
LLLQ++ ++ V V+YVSGEES +QI RA+R+ E +LY+ T+++ +
Sbjct: 58 LLLQVSTQLSQV------GTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSVRA 111
Query: 283 KVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKS 342
+V+ + P LIIDSIQT+ ++G G + QV+E T+ L++ AK NI + + GHVTK
Sbjct: 112 EVERIQPDFLIIDSIQTIMSPELSGVQGSVSQVREVTAELMQLAKTNNIAIFIVGHVTKE 171
Query: 343 GDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPS 402
G +AGPR+LEH+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS
Sbjct: 172 GTLAGPRMLEHMVDTVLYFEGERHHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPS 231
Query: 403 KIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMI 460
++FL E+ + G ++ V M+G+R L E+QAL R G+ +RA +I
Sbjct: 232 QVFLEERLDGA---TGSSIVVTMEGTRPILAEVQALVTPTMFGNAKRTTTGLDFNRASLI 288
Query: 461 ISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIG 520
++VL K+AGL LQ +L GV L E A DLAVA AI SS+ + P F+GE+G
Sbjct: 289 MAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKPTNPQECFVGELG 348
Query: 521 LGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
L GE+R V+R+E+R++ AKLG+ K VPK++ + +++E IG ++EV+ VF
Sbjct: 349 LTGEIRRVNRIEQRINEAAKLGFTKIYVPKNSLTGITPP--KEIEVIGVTTIQEVLKKVF 406
>gi|167770645|ref|ZP_02442698.1| hypothetical protein ANACOL_01991 [Anaerotruncus colihominis DSM
17241]
gi|167667240|gb|EDS11370.1| DNA repair protein RadA [Anaerotruncus colihominis DSM 17241]
Length = 468
Score = 333 bits (854), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 188/477 (39%), Positives = 284/477 (59%), Gaps = 30/477 (6%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVR 171
N++ +VC CGY +W+G C C ++ V Q+ P+
Sbjct: 12 NKSVYVCQSCGYESVKWYGRCPDCGEWNSLVE---------EVRQQVAAPKTRAVSAAPA 62
Query: 172 LLEVNKGMKQL------DWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLL 225
+ +L D + +G+ E+ RVLGGG+V GS++L+ GDPG+GKSTLLL
Sbjct: 63 VPRAAAQAARLSDISSDDSQRYKTGV--GELDRVLGGGIVAGSVMLLSGDPGIGKSTLLL 120
Query: 226 QMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQ 285
Q+ + ++YVSGEES Q+ RA+R+ + ++ L++ ++TD+E+++E V+
Sbjct: 121 QICQYLCG------GLKILYVSGEESARQLKLRANRLGVESDNLYISATTDVENVLETVR 174
Query: 286 PLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDI 345
LSP ++IDSIQT+ L + SAG + Q++ECT L+ AK IPV + GHV K G I
Sbjct: 175 KLSPDVVMIDSIQTMNLTALTSSAGSVTQIRECTQVLIGIAKSAEIPVFIVGHVNKDGAI 234
Query: 346 AGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIF 405
AGP++LEH+VDAVLY EGE+ +YR+LR+VKNR+GST+E+GVFEM Q GL+ V NPS +
Sbjct: 235 AGPKMLEHMVDAVLYFEGERHQNYRILRAVKNRYGSTNEIGVFEMGQEGLREVPNPSLMM 294
Query: 406 LSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS---TVSRHVNGIQASRADMIIS 462
LS + + ++G VA +M+G+R L E+QAL VS + T R G +RA ++I+
Sbjct: 295 LSGRPKN---VSGTCVACVMEGTRPILAEVQAL-VSKTGFGTPRRQAAGFDYNRAALLIA 350
Query: 463 VLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLG 522
VL K+ G ++NVV G+ L E A DL VA A+ S+ L+ IP+ +A GEIGL
Sbjct: 351 VLEKRGGYFFGTLDAYINVVGGLRLDEPAADLPVAMALVSNLLDKCIPDDLAAFGEIGLA 410
Query: 523 GELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVV 579
GE+R V +++RVS +LG+ C++P+ + + IG +NL + I V+
Sbjct: 411 GEVRSVGSIQQRVSEAYRLGFTTCVIPRHCVSMVDARDMPDLNLIGVQNLSQAIAVI 467
>gi|389573540|ref|ZP_10163614.1| DNA repair protein RadA [Bacillus sp. M 2-6]
gi|388426855|gb|EIL84666.1| DNA repair protein RadA [Bacillus sp. M 2-6]
Length = 439
Score = 333 bits (854), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 178/389 (45%), Positives = 255/389 (65%), Gaps = 18/389 (4%)
Query: 195 EVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQ 254
E RVLG G+V GSLVLIGGDPG+GKSTLLLQ++A ++D + V+Y+SGEES++Q
Sbjct: 59 EFNRVLGSGIVKGSLVLIGGDPGIGKSTLLLQVSAQLSD-----QNQNVLYISGEESIKQ 113
Query: 255 IGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQ 314
RADR+ I + L + + TD+E I +Q + P +++DSIQTVY + + G + Q
Sbjct: 114 TKLRADRLGIESASLHVLAETDMEYITSAIQEMKPAFVVVDSIQTVYQSDITSAPGSVSQ 173
Query: 315 VKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRS 374
V+ECT+ L++ AK IP+ + GHVTK G IAGPR+LEH+VD VLY EGE+ ++R+LR+
Sbjct: 174 VRECTAQLMKIAKTNGIPIFIVGHVTKEGSIAGPRLLEHMVDTVLYFEGERHHTFRILRA 233
Query: 375 VKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIE 434
VKNRFGST+ELG+FEM + GL V NPS+IFL E+ S ++G V M+G+R L+E
Sbjct: 234 VKNRFGSTNELGIFEMREEGLTEVLNPSEIFLEER---SAGVSGSCVVASMEGTRPVLVE 290
Query: 435 IQALC--VSGSTVSRHVNGIQASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAG 492
IQAL S R G+ +R ++++VL K+ GL LQ +L V GV L E A
Sbjct: 291 IQALISPTSFGNPRRMATGLDHNRVSLLMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAI 350
Query: 493 DLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSA 552
DLA+A +I SSF + FIGE+GL GE+R VSR+E+RV AKLG+++ +P++
Sbjct: 351 DLAIAVSIASSFKDAAPHQADCFIGEVGLTGEVRRVSRIEQRVQEAAKLGFKRMFIPQA- 409
Query: 553 EKSLATLGFEQ---MEFIGCKNLKEVINV 578
G+++ +E +G +N+ E + +
Sbjct: 410 ----NIDGWKKPRGIELVGVENVAEALRI 434
>gi|304387909|ref|ZP_07370082.1| DNA repair protein RadA [Neisseria meningitidis ATCC 13091]
gi|304338006|gb|EFM04143.1| DNA repair protein RadA [Neisseria meningitidis ATCC 13091]
Length = 464
Score = 333 bits (854), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 192/476 (40%), Positives = 279/476 (58%), Gaps = 32/476 (6%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKP--EEV 167
K +T + C++CG T +W G C C T++ A + Q +W + +
Sbjct: 8 KTLKTLYQCTECGGTSPKWQGKCPHCGEWNTLQESLAAPEPKNARFQ-SWAADTSTVQSL 66
Query: 168 QPVRLLEVNK---GMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLL 224
V EV + GM +LD RVLGGGLV G+++L+GGDPG+GKSTLL
Sbjct: 67 SAVTATEVPRNPTGMGELD--------------RVLGGGLVDGAVILLGGDPGIGKSTLL 112
Query: 225 LQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKV 284
LQ A +A + V+YVSGEES +Q+ RA R+ + T+ + L + +E I +
Sbjct: 113 LQTIAKMA------QSRKVLYVSGEESAQQVALRAQRLELPTDGVNLLAEIRMEAIQAAL 166
Query: 285 QPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGD 344
+ P ++IDSIQT+Y + + G + QV+EC + L R AK+ I ++L GHVTK G
Sbjct: 167 KQHQPEVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRMAKQMGIAMILVGHVTKDGA 226
Query: 345 IAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKI 404
IAGPRVLEH+VD VLY EG++ S+YR++R++KNRFG+ +ELGVF M++ GL+ VSNPS I
Sbjct: 227 IAGPRVLEHMVDTVLYFEGDQHSNYRMIRAIKNRFGAANELGVFAMTENGLKGVSNPSAI 286
Query: 405 FLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIIS 462
FL+ D+ G V V +GSR L+EIQAL G T R G++ +R M+++
Sbjct: 287 FLASYRDDT---PGSCVLVTQEGSRPLLVEIQALVDDAHGFTPKRLTVGLEQNRLAMLLA 343
Query: 463 VLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLG 522
VL + G+ + +FLN V GV + E A DLAV A+ SSF P+P GEIGL
Sbjct: 344 VLNRHGGIACFDQDVFLNAVGGVKIGEPAADLAVILAMLSSFRNRPMPEKTVVFGEIGLS 403
Query: 523 GELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINV 578
GE+R V+R ++R+ KLG+++ IVPK+ A F ++ G +L+E I++
Sbjct: 404 GEVRPVARGQERLKEAEKLGFKRAIVPKANMPRNAK-EFPNLKIYGVSSLQEAIDI 458
>gi|429763455|ref|ZP_19295804.1| DNA repair protein RadA [Anaerostipes hadrus DSM 3319]
gi|429178649|gb|EKY19925.1| DNA repair protein RadA [Anaerostipes hadrus DSM 3319]
Length = 451
Score = 333 bits (854), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 190/469 (40%), Positives = 277/469 (59%), Gaps = 24/469 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T + CS CG+ +W G C AC+ T E+ +G P+ +
Sbjct: 5 KTVYFCSQCGHESSKWMGQCPACKQWNTFTEEKVTETKKGGA------KSLKTSASPMNI 58
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
EV + + RIP +G+ +E+ RVLGGG+V GSL L+GGDPG+GKSTLLLQ+ +A
Sbjct: 59 SEVTV---ENEERIP-TGI--HELDRVLGGGIVKGSLSLVGGDPGIGKSTLLLQVCRNLA 112
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+ V+Y+SGEES+ QI RA+R+ EE+ LY TD++ I + P
Sbjct: 113 N-----SKRKVLYISGEESMHQIKMRAERIGTFEEEMLLYCETDLDAITNAILKTKPEFA 167
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
+IDSIQT+Y ++ +AG + QV+E T+A++R AK+ NI V + GHVTK G +AGPR LE
Sbjct: 168 VIDSIQTMYSEDLSSAAGSVSQVREVTAAMMRVAKENNIAVFIVGHVTKEGVVAGPRTLE 227
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EGE+ ++YR+LR VKNRFGST+E+GVFEM GL V NPSK L+ + D
Sbjct: 228 HMVDTVLYFEGEREAAYRILRGVKNRFGSTNEIGVFEMCNNGLVEVENPSKTMLNGRPLD 287
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVLMKQAGL 470
+ +G V M+G+R LIEIQAL S R GI +R +++++VL K+ GL
Sbjct: 288 A---SGSVVVCSMEGTRPILIEIQALVSPTSFQMPRRTAVGIDYNRVNLLMAVLEKRVGL 344
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
+L ++N+ G+ L E A DL + AI SS+ PI GE+GL GE+R VS
Sbjct: 345 QLGGCDAYVNLAGGMKLGEPAIDLGIIMAIASSYKNRPILEDTIIFGEVGLVGEVRAVSG 404
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVV 579
E R+ KLG+++C++P++ + M +G N+ E ++++
Sbjct: 405 GEARIKEAQKLGFKRCVLPQANVDQIKVQ--TDMRLVGVSNVMEALDLI 451
>gi|307244727|ref|ZP_07526829.1| DNA repair protein RadA [Peptostreptococcus stomatis DSM 17678]
gi|306491904|gb|EFM63955.1| DNA repair protein RadA [Peptostreptococcus stomatis DSM 17678]
Length = 459
Score = 333 bits (854), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 179/476 (37%), Positives = 281/476 (59%), Gaps = 31/476 (6%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTM------KRYSAGESDEGPVVQRTWLPQKPEE 166
++ +VC +CGY + +W G C C T K +S + T P K
Sbjct: 5 KSKYVCQNCGYENPKWLGKCPECLQWNTFVEEIEEKMTPKQQSLARQASRSTSRPVKINS 64
Query: 167 VQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQ 226
+ P R + + +LD RVLGGG++PGSLVL+GGDPG+GKSTLLLQ
Sbjct: 65 IAPKREERFSTSIPELD--------------RVLGGGVIPGSLVLVGGDPGIGKSTLLLQ 110
Query: 227 MAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQP 286
++ +A+ V+Y+SGEES QI RA R+ ++++ L++Y+ ++ I ++
Sbjct: 111 VSNNVAETG-----KKVLYISGEESESQIKMRAKRLKVSSDNLYIYTENNLAAIELQIAE 165
Query: 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIA 346
+ P +I+DSIQT+ + + G + Q+KE TS ++ +K +I + GHVTK G +A
Sbjct: 166 VEPDMVIVDSIQTMISPEINSAPGTISQIKEGTSKFMKISKSKSISTFIVGHVTKEGALA 225
Query: 347 GPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFL 406
GP++LEH+VD VLY EGE++++YRLLR+VKNRFGST+ELGVFEM GL + NPSK+ +
Sbjct: 226 GPKLLEHMVDTVLYFEGERYNTYRLLRAVKNRFGSTNELGVFEMKSDGLVELENPSKVLI 285
Query: 407 SEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVL 464
+E+ +D ++G + ++G+RS L+E+QAL + R G+ +R +I++VL
Sbjct: 286 AEKPND---VSGSVIVSTVEGTRSMLLELQALVAPTNFGYPRRTTTGVDNNRVALILAVL 342
Query: 465 MKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGE 524
K G+++Q +F+N++ G+ + E + DL +A AI SSF P+ + GEIGL GE
Sbjct: 343 EKVIGMQVQSQDVFVNIIGGLRINEPSMDLGIALAIASSFRNIPVDASVVVTGEIGLTGE 402
Query: 525 LRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
LR VS +EKR+ KLG++K ++PK + ++E + NL++ I V
Sbjct: 403 LRTVSFIEKRIMECEKLGFKKMVIPKGNYLDEFKKDY-RIELVPVYNLRQAIREVL 457
>gi|282850308|ref|ZP_06259687.1| DNA repair protein RadA [Veillonella parvula ATCC 17745]
gi|282579801|gb|EFB85205.1| DNA repair protein RadA [Veillonella parvula ATCC 17745]
Length = 457
Score = 333 bits (854), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 187/474 (39%), Positives = 293/474 (61%), Gaps = 26/474 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQK---PEEVQP 169
++ + C +CG +W G C C T+ E +G RT P + + +P
Sbjct: 5 KSVFFCQNCGAESSKWMGRCPQCGEWNTL----VEEIIKGTKHSRT--PSRGVGNQTAKP 58
Query: 170 VRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAA 229
L ++ ++ +S FG E+ RVLGGG+VPG+L+L+GGDPG+GKSTLLLQ++
Sbjct: 59 TALPDI-----EISSIARVSTTFG-EIDRVLGGGIVPGALMLLGGDPGIGKSTLLLQVSQ 112
Query: 230 IIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSP 289
+AD V+Y SGEES Q+ RA+R+ I +E L + + TD++ I+E+ + ++P
Sbjct: 113 KVADT-----VGAVLYASGEESQLQLKLRAERLHINSERLQVIADTDLDHILEQAEAITP 167
Query: 290 RALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPR 349
L+IDSIQT+Y + + G + QV+ECTS LLRF K+ NIP ++ GHVTK G+IAGPR
Sbjct: 168 SLLVIDSIQTMYTGDIDAAPGSVSQVRECTSRLLRFCKERNIPTVIIGHVTKEGNIAGPR 227
Query: 350 VLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQ 409
+LEH+VD VLY EGE+ +R+LRS+KNRFGST E G+F M + GLQ +SNPS L+E+
Sbjct: 228 MLEHMVDVVLYFEGERSYQFRILRSIKNRFGSTSETGIFAMVEEGLQELSNPSASLLAER 287
Query: 410 HSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMKQ 467
SD E +G AV + ++G R L+E+Q+L V+ + R G +R ++++VL K+
Sbjct: 288 -SDEE--SGSAVMIYLEGVRPILVEVQSLVVTTAFGMPRRTAIGYDLNRLIVLLAVLEKR 344
Query: 468 AGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRM 527
G L +++NV+ G+ + E A DL++A AI S+ +P + +GE+GL G +R
Sbjct: 345 CGFTLGNKDVYVNVIGGLKVNEPACDLSMAVAIVSNLKNRIVPTDMVILGEVGLTGNVRS 404
Query: 528 VSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVFT 581
+ R+E+R++ KLG++K I+P+ K + ++ G K+++E + +VF+
Sbjct: 405 IPRIEQRINEAKKLGFKKFIIPEGNYKQIKD-NDSSIKIRGVKSIQEAMQLVFS 457
>gi|148995211|ref|ZP_01824046.1| DNA repair protein RadA [Streptococcus pneumoniae SP9-BS68]
gi|168489513|ref|ZP_02713712.1| DNA repair protein RadA [Streptococcus pneumoniae SP195]
gi|417677986|ref|ZP_12327387.1| DNA repair protein RadA [Streptococcus pneumoniae GA17570]
gi|418124645|ref|ZP_12761568.1| DNA repair protein RadA [Streptococcus pneumoniae GA44511]
gi|418190494|ref|ZP_12826999.1| DNA repair protein RadA [Streptococcus pneumoniae GA47388]
gi|418213224|ref|ZP_12839959.1| DNA repair protein RadA [Streptococcus pneumoniae GA54644]
gi|418233243|ref|ZP_12859824.1| DNA repair protein RadA [Streptococcus pneumoniae GA08780]
gi|419483294|ref|ZP_14023070.1| DNA repair protein RadA [Streptococcus pneumoniae GA43257]
gi|419507131|ref|ZP_14046787.1| DNA repair protein RadA [Streptococcus pneumoniae GA49542]
gi|421219274|ref|ZP_15676137.1| DNA repair protein RadA [Streptococcus pneumoniae 2070425]
gi|421221588|ref|ZP_15678390.1| DNA repair protein RadA [Streptococcus pneumoniae 2070531]
gi|147926813|gb|EDK77868.1| DNA repair protein RadA [Streptococcus pneumoniae SP9-BS68]
gi|183572080|gb|EDT92608.1| DNA repair protein RadA [Streptococcus pneumoniae SP195]
gi|332075680|gb|EGI86147.1| DNA repair protein RadA [Streptococcus pneumoniae GA17570]
gi|353801501|gb|EHD81803.1| DNA repair protein RadA [Streptococcus pneumoniae GA44511]
gi|353858093|gb|EHE38053.1| DNA repair protein RadA [Streptococcus pneumoniae GA47388]
gi|353870507|gb|EHE50378.1| DNA repair protein RadA [Streptococcus pneumoniae GA54644]
gi|353889827|gb|EHE69594.1| DNA repair protein RadA [Streptococcus pneumoniae GA08780]
gi|379582805|gb|EHZ47682.1| DNA repair protein RadA [Streptococcus pneumoniae GA43257]
gi|379613266|gb|EHZ77978.1| DNA repair protein RadA [Streptococcus pneumoniae GA49542]
gi|395591084|gb|EJG51381.1| DNA repair protein RadA [Streptococcus pneumoniae 2070531]
gi|395591961|gb|EJG52254.1| DNA repair protein RadA [Streptococcus pneumoniae 2070425]
Length = 420
Score = 333 bits (854), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 186/424 (43%), Positives = 270/424 (63%), Gaps = 31/424 (7%)
Query: 165 EEVQPVRLLEV-----NKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVG 219
E+ +P++L EV N+ +++ E RVLGGG+VPGSLVLIGGDPG+G
Sbjct: 19 EKTKPMKLAEVTSTNVNRTKTEME-----------EFNRVLGGGVVPGSLVLIGGDPGIG 67
Query: 220 KSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIED 279
KSTLLLQ++ ++ V V+YVSGEES +QI RA+R+ E +LY+ T+++
Sbjct: 68 KSTLLLQVSTQLSQV------GTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQS 121
Query: 280 IVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHV 339
+ +V+ + P LIIDSIQT+ ++G G + QV+E T+ L++ AK NI + + GHV
Sbjct: 122 VRAEVERIQPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELMQLAKTNNIAIFIVGHV 181
Query: 340 TKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVS 399
TK G +AGPR+LEH+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V
Sbjct: 182 TKEGTLAGPRMLEHMVDTVLYFEGERHHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVL 241
Query: 400 NPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRA 457
NPS++FL E+ + G ++ V M+G+R L E+QAL R G+ +RA
Sbjct: 242 NPSQVFLEERLDGA---TGSSIVVTMEGTRPILAEVQALVTPTMFGNAKRTTTGLDFNRA 298
Query: 458 DMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIG 517
+I++VL K+AGL LQ +L GV L E A DLAVA AI SS+ + P F+G
Sbjct: 299 SLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKPTNPQECFVG 358
Query: 518 EIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGF-EQMEFIGCKNLKEVI 576
E+GL GE+R V+R+E+R++ AKLG+ K VPK+ SL + ++++ IG ++EV+
Sbjct: 359 ELGLTGEIRRVNRIEQRINEAAKLGFTKIYVPKN---SLTGITLPKEIQVIGVTTIQEVL 415
Query: 577 NVVF 580
VF
Sbjct: 416 KKVF 419
>gi|401684998|ref|ZP_10816869.1| DNA repair protein RadA [Streptococcus sp. BS35b]
gi|400183470|gb|EJO17724.1| DNA repair protein RadA [Streptococcus sp. BS35b]
Length = 397
Score = 333 bits (854), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 179/388 (46%), Positives = 256/388 (65%), Gaps = 13/388 (3%)
Query: 195 EVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQ 254
E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ ++ V V+YVSGEES +Q
Sbjct: 20 EFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSQV------GTVLYVSGEESAQQ 73
Query: 255 IGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQ 314
I RA+R+ E +LY+ T+++ + +V+ + P LIIDSIQT+ ++G G + Q
Sbjct: 74 IKLRAERLGDIDSEFYLYAETNMQSVRAEVERIQPDFLIIDSIQTIMSPEISGVQGSVSQ 133
Query: 315 VKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRS 374
V+E T+ L++ AK NI + + GHVTK G +AGPR+LEH+VD VLY EGE+ ++R+LR+
Sbjct: 134 VREVTAELMQLAKTNNIAIFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGERHHTFRILRA 193
Query: 375 VKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIE 434
VKNRFGST+E+G+FEM GL V NPS++FL+E+ + G ++ V M+G+R L E
Sbjct: 194 VKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLAERLDGA---TGSSIVVTMEGTRPILAE 250
Query: 435 IQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAG 492
+QAL R G+ +RA +I++VL K+AGL LQ +L GV L E A
Sbjct: 251 VQALVTPTMFGNAKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAI 310
Query: 493 DLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSA 552
DLAVA AI SS+ + P F+GE+GL GE+R V+R+E+R++ AKLG+ K VPK++
Sbjct: 311 DLAVAVAIASSYKDKPTNPQECFVGELGLTGEIRRVNRIEQRINEAAKLGFTKIYVPKNS 370
Query: 553 EKSLATLGFEQMEFIGCKNLKEVINVVF 580
+ +++E IG ++EV+ VF
Sbjct: 371 LTGITPP--KEIEVIGVTTIQEVLKKVF 396
>gi|238020797|ref|ZP_04601223.1| hypothetical protein GCWU000324_00687 [Kingella oralis ATCC 51147]
gi|237867777|gb|EEP68783.1| hypothetical protein GCWU000324_00687 [Kingella oralis ATCC 51147]
Length = 459
Score = 333 bits (854), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 190/471 (40%), Positives = 277/471 (58%), Gaps = 22/471 (4%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQP 169
KA +T + C++CG T +W G C C T++ A + Q +W + V
Sbjct: 3 KAPKTIYRCTECGGTVPKWQGKCPHCGEWNTLQEDIAAPEPKNARFQ-SWAADTAQVVDL 61
Query: 170 VRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAA 229
R+ V +P E+ RVLGGGLV G+++L+GGDPG+GKSTLLLQ A
Sbjct: 62 SRVSAVE---------VPRQPTGMGELDRVLGGGLVDGAVILLGGDPGIGKSTLLLQTVA 112
Query: 230 IIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSP 289
+A + V+YVSGEES +Q+ RA R+ + +E + L + +E + ++ P
Sbjct: 113 KMA------QSRKVLYVSGEESAQQVALRAQRLGLHSEGINLLAEIRLEAVQAALKQHQP 166
Query: 290 RALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPR 349
++IDSIQT+Y + + G + QV+EC + R AK+ I ++ GHVTK G IAGPR
Sbjct: 167 ALVVIDSIQTMYSDQITSAPGSVSQVRECAAQFTRIAKQMGIAMIFVGHVTKDGAIAGPR 226
Query: 350 VLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQ 409
VLEH+VD VLY EG++ S+YR++R++KNRFG+ +ELGVF M++ GL+ VSNPS IFL+
Sbjct: 227 VLEHMVDTVLYFEGDQHSNYRMIRAIKNRFGAANELGVFAMTEQGLKGVSNPSAIFLASY 286
Query: 410 HSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVLMKQ 467
D +AG V V +GSR L+EIQAL G T R G++ +R M+++VL +
Sbjct: 287 RDD---VAGSCVLVTQEGSRPLLVEIQALVDDAHGFTPKRLSVGLEQNRLAMLLAVLNRH 343
Query: 468 AGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRM 527
AG+ + +FLN V GV + E A DLAV A+ SSF P+P + GEIGL GE+R
Sbjct: 344 AGIACFDQDVFLNAVGGVKIGEPASDLAVILAMVSSFRNKPLPEKMVVFGEIGLSGEVRP 403
Query: 528 VSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINV 578
VSR ++R+ KLG+++ IVPK+ A F ++ G + L E + +
Sbjct: 404 VSRGQERLKEAEKLGFQRAIVPKANLPRNAK-EFPNLQIYGVERLDEAVQL 453
>gi|322386670|ref|ZP_08060295.1| DNA repair protein RadA [Streptococcus cristatus ATCC 51100]
gi|417921403|ref|ZP_12564894.1| DNA repair protein RadA [Streptococcus cristatus ATCC 51100]
gi|321269343|gb|EFX52278.1| DNA repair protein RadA [Streptococcus cristatus ATCC 51100]
gi|342834086|gb|EGU68361.1| DNA repair protein RadA [Streptococcus cristatus ATCC 51100]
Length = 418
Score = 333 bits (854), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 185/420 (44%), Positives = 261/420 (62%), Gaps = 24/420 (5%)
Query: 163 KPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKST 222
+P ++ V ++VN+ ++D E RVLGGG+VPGSLVLIGGDPG+GKST
Sbjct: 19 RPMKLAEVTSIDVNRTKTEMD-----------EFNRVLGGGVVPGSLVLIGGDPGIGKST 67
Query: 223 LLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVE 282
LLLQ++ L V+YVSGEES EQI RA+R+ E +LY+ T++++I
Sbjct: 68 LLLQVST------QLSHQGTVLYVSGEESAEQIKLRAERLGDIDSEFYLYAETNMQNIRT 121
Query: 283 KVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKS 342
+++ + P LIIDSIQTV ++ G + QV+E T+ L++ AK NI + GH+TK
Sbjct: 122 EIEKIKPDFLIIDSIQTVMSPEISSVQGSVSQVREVTAELMQLAKTNNIATFIVGHMTKE 181
Query: 343 GDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPS 402
G +AGPR LEH+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS
Sbjct: 182 GTLAGPRTLEHMVDTVLYFEGERQHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVVNPS 241
Query: 403 KIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMI 460
++FL E+ + G ++ V M+G+R L E+QAL R G+ +RA +I
Sbjct: 242 EVFLEERLDGA---TGSSIVVTMEGTRPILAEVQALVTPTMFGNAKRTTTGLDFNRASLI 298
Query: 461 ISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIG 520
++VL K+AGL LQ +L GV L E A DLAVA AI SS+ + P FIGEIG
Sbjct: 299 MAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDLPTNPQECFIGEIG 358
Query: 521 LGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
L GE+R V+R+E+R++ AKLG+ K PK++ L + ++ IG + EV+ VF
Sbjct: 359 LTGEIRRVNRIEQRINEAAKLGFTKIYAPKNSLNGLKVP--DNIQVIGVTTIGEVLKKVF 416
>gi|429745199|ref|ZP_19278633.1| DNA repair protein RadA [Neisseria sp. oral taxon 020 str. F0370]
gi|429161033|gb|EKY03473.1| DNA repair protein RadA [Neisseria sp. oral taxon 020 str. F0370]
Length = 460
Score = 333 bits (853), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 192/476 (40%), Positives = 282/476 (59%), Gaps = 32/476 (6%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQ--KPEEV 167
KA +T + CS+CG T +W G C C T++ A + Q +W + + +E+
Sbjct: 3 KAPKTIYQCSECGGTAVKWQGKCPHCGEWNTLQESVAAPEPKNARFQ-SWAAESTQVQEL 61
Query: 168 QPVRLLEVNK---GMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLL 224
V +EV + GM +LD RVLGGGLV G+++L+GGDPG+GKSTLL
Sbjct: 62 SRVSAVEVPREATGMGELD--------------RVLGGGLVDGAVILLGGDPGIGKSTLL 107
Query: 225 LQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKV 284
LQ A++A + V+YVSGEES +Q+ RA R+ + E + L + +E + +
Sbjct: 108 LQTIALMA------KKRKVLYVSGEESAQQVALRAQRLGLNAEGVNLLAEIRLEAVQAAL 161
Query: 285 QPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGD 344
+ P ++IDSIQT+Y + + G + QV+EC + R AK+ I ++ GHVTK G
Sbjct: 162 KQHHPGVVVIDSIQTMYSDQITSAPGSVSQVRECAAQFTRIAKQMGIAMIFVGHVTKDGA 221
Query: 345 IAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKI 404
IAGPRVLEH+VD VLY EG++ S+YR++R++KNRFG+ +ELGVF M++ GL+ VSNPS I
Sbjct: 222 IAGPRVLEHMVDTVLYFEGDQHSNYRMIRAIKNRFGAANELGVFAMTETGLKGVSNPSAI 281
Query: 405 FLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIIS 462
FL+ D +AG V V +GSR L+EIQAL G T R G++ +R M+++
Sbjct: 282 FLASYRDD---VAGSCVLVTQEGSRPLLVEIQALVDDAHGFTPKRLTVGLEQNRLSMLLA 338
Query: 463 VLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLG 522
VL + AG+ + +FLN V GV + E A DLAV A+ SSF +P + GEIGL
Sbjct: 339 VLNRHAGIACFDQDVFLNAVGGVKIGEPASDLAVILAMVSSFRNKALPEKMVAFGEIGLS 398
Query: 523 GELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINV 578
GE+R V+R ++R+ KLG+++ IVPK+ A F ++ G + L E + +
Sbjct: 399 GEVRPVARGQERLKEAEKLGFKRAIVPKANLPRNAK-EFPNLQIYGVERLDEAVRL 453
>gi|322390363|ref|ZP_08063887.1| DNA repair protein RadA [Streptococcus parasanguinis ATCC 903]
gi|321142931|gb|EFX38385.1| DNA repair protein RadA [Streptococcus parasanguinis ATCC 903]
Length = 406
Score = 333 bits (853), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 180/388 (46%), Positives = 254/388 (65%), Gaps = 13/388 (3%)
Query: 195 EVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQ 254
E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ ++ V V+YVSGEES +Q
Sbjct: 30 EFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSQV------GTVLYVSGEESAQQ 83
Query: 255 IGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQ 314
I RA+R+ E +LY+ T+++ + +V+ + P LIIDSIQT+ ++G G + Q
Sbjct: 84 IKLRAERLGDIDSEFYLYAETNMQSVRAEVERIQPDFLIIDSIQTIMSPEISGVQGSVSQ 143
Query: 315 VKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRS 374
V+E T+ L++ AK NI + + GHVTK G +AGPR+LEH+VD VLY EGE+ ++R+LR+
Sbjct: 144 VREVTAELMQLAKTNNIAIFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGERHHTFRILRA 203
Query: 375 VKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIE 434
VKNRFGST+E+G+FEM GL V NPS++FL E+ + G ++ V M+G+R L E
Sbjct: 204 VKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGA---TGSSIVVTMEGTRPILAE 260
Query: 435 IQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAG 492
+QAL R G+ +RA +I++VL K+AGL LQ +L GV L E A
Sbjct: 261 VQALVTPTMFGNAKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAI 320
Query: 493 DLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSA 552
DLAVA AI SS+ + P F+GE+GL GE+R V+R+E+R++ AKLG+ K VPK++
Sbjct: 321 DLAVAVAIASSYKDKPTNPQECFVGELGLTGEVRRVNRIEQRINEAAKLGFTKIYVPKNS 380
Query: 553 EKSLATLGFEQMEFIGCKNLKEVINVVF 580
++T +E +G L EV+ VF
Sbjct: 381 LTGISTPS--GIEVVGVSTLSEVLKKVF 406
>gi|293364577|ref|ZP_06611298.1| DNA repair protein RadA [Streptococcus oralis ATCC 35037]
gi|291316835|gb|EFE57267.1| DNA repair protein RadA [Streptococcus oralis ATCC 35037]
Length = 405
Score = 333 bits (853), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 184/420 (43%), Positives = 267/420 (63%), Gaps = 24/420 (5%)
Query: 163 KPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKST 222
KP ++ V + VN+ +++ E RVLGGG+VPGSLVLIGGDPG+GKST
Sbjct: 7 KPMKLAEVTSINVNRTKTEME-----------EFNRVLGGGVVPGSLVLIGGDPGIGKST 55
Query: 223 LLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVE 282
LLLQ++ ++ V V+YVSGEES +QI RA+R+ E +LY+ T+++ +
Sbjct: 56 LLLQVSTQLSQV------GTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSVRA 109
Query: 283 KVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKS 342
+V+ + P LIIDSIQT+ ++G G + QV+E T+ L++ AK NI + + GHVTK
Sbjct: 110 EVERIQPDFLIIDSIQTIMSPELSGVQGSVSQVREVTAELMQLAKTNNIAIFIVGHVTKE 169
Query: 343 GDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPS 402
G +AGPR+LEH+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS
Sbjct: 170 GTLAGPRMLEHMVDTVLYFEGERHHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPS 229
Query: 403 KIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMI 460
++FL E+ + G ++ V M+G+R L E+QAL R G+ +RA +I
Sbjct: 230 QVFLEERLDGA---TGSSIVVTMEGTRPILAEVQALVTPTMFGNAKRTTTGLDFNRASLI 286
Query: 461 ISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIG 520
++VL K+AGL LQ +L GV L E A DLAVA AI SS+ + P F+GE+G
Sbjct: 287 MAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKPTNPQECFVGELG 346
Query: 521 LGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
L GE+R V+R+E+R++ AKLG+ K VPK++ + +++E IG ++EV+ VF
Sbjct: 347 LTGEIRRVNRIEQRINEAAKLGFTKIYVPKNSLTGITPP--KEIEVIGVTTIQEVLKKVF 404
>gi|339624901|ref|ZP_08660690.1| DNA repair protein RadA [Fructobacillus fructosus KCTC 3544]
Length = 455
Score = 333 bits (853), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 189/475 (39%), Positives = 278/475 (58%), Gaps = 32/475 (6%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQ----RTWLPQKPEEVQ 168
+T ++CS+C + ++ G C C GT E P Q R L K +VQ
Sbjct: 5 KTQFICSNCDFISARYLGRCPNCGEWGTFV-----EEKIQPETQSRKSRVGLDGKAAKVQ 59
Query: 169 PVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMA 228
+ + + + P E+ RVLGGG+V G+LVLIGGDPG+GKSTLLLQ++
Sbjct: 60 KINQVSLEE--------TPKVATNLQELNRVLGGGVVAGTLVLIGGDPGIGKSTLLLQVS 111
Query: 229 AIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLS 288
+A+ H V+YV+GEES Q+ RADR+ + E+ +LY TD+E I ++V+ L
Sbjct: 112 GQLAN-H-----GKVLYVTGEESATQVKMRADRLEVGGEDFYLYPETDMEAIKKQVEELK 165
Query: 289 PRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGP 348
P L+IDS+QT+ + G + Q++E T+ LL+ AK NI + + GHVTK G IAGP
Sbjct: 166 PNFLVIDSVQTMQEPDLTSPIGSVAQIREVTADLLQIAKTNNISIFIVGHVTKGGAIAGP 225
Query: 349 RVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSE 408
++LEH+VD VLY EG++ YR+LR+VKNRFG+T+ELG+FEM GL V+NPS+IFL E
Sbjct: 226 KILEHMVDTVLYFEGDRHYKYRILRAVKNRFGATNELGIFEMRDKGLAEVANPSEIFLEE 285
Query: 409 QHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMK 466
+ + + G A+ ++G R L+E+QAL R G+ +R +I++VL K
Sbjct: 286 RLAGA---TGSAIVATLEGERPILVELQALVTPSVFGNAQRTATGLDRNRVSLIMAVLEK 342
Query: 467 QAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELR 526
+A L LQ +L GV L E A DLA+A AI SS+ + P FIGE+GL GE+R
Sbjct: 343 RANLLLQNQDAYLKAAGGVKLDEPAIDLAIAVAIASSYQDKESPASDVFIGELGLTGEVR 402
Query: 527 MVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGF-EQMEFIGCKNLKEVINVVF 580
V+ +E R+ KLG+ + +VPK+ +L + + ++ IG +KE + +
Sbjct: 403 SVTDLEGRLKEARKLGFSRAVVPKN---NLGGVNVPDGLKVIGVSTIKEALQLAL 454
>gi|383939259|ref|ZP_09992436.1| DNA repair protein RadA [Streptococcus pseudopneumoniae SK674]
gi|418973136|ref|ZP_13521164.1| DNA repair protein RadA [Streptococcus pseudopneumoniae ATCC
BAA-960]
gi|383350266|gb|EID28150.1| DNA repair protein RadA [Streptococcus pseudopneumoniae ATCC
BAA-960]
gi|383713856|gb|EID69885.1| DNA repair protein RadA [Streptococcus pseudopneumoniae SK674]
Length = 407
Score = 333 bits (853), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 183/420 (43%), Positives = 267/420 (63%), Gaps = 24/420 (5%)
Query: 163 KPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKST 222
KP ++ V + VN+ +++ E RVLGGG+VPGSLVLIGGDPG+GKST
Sbjct: 9 KPMKLAEVTSINVNRTKTEME-----------EFNRVLGGGVVPGSLVLIGGDPGIGKST 57
Query: 223 LLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVE 282
LLLQ++ ++ V V+YVSGEES +QI RA+R+ E +LY+ T+++ +
Sbjct: 58 LLLQVSTQLSQV------GTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSVRA 111
Query: 283 KVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKS 342
+V+ + P LIIDSIQT+ ++G G + QV+E T+ L++ AK NI + + GHVTK
Sbjct: 112 EVERIQPNFLIIDSIQTIMSPEISGVQGSVSQVREVTAELMQLAKTNNIAIFIVGHVTKE 171
Query: 343 GDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPS 402
G +AGPR+LEH+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS
Sbjct: 172 GTLAGPRMLEHMVDTVLYFEGERHHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPS 231
Query: 403 KIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMI 460
++FL E+ + G ++ V M+G+R L E+QAL R G+ +RA +I
Sbjct: 232 QVFLEERLDGA---TGSSIVVTMEGTRPILAEVQALVTPTMFGNAKRTTTGLDFNRASLI 288
Query: 461 ISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIG 520
++VL K+AGL LQ +L GV L E A DLAVA AI SS+ + P F+GE+G
Sbjct: 289 MAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKPTNPQECFVGELG 348
Query: 521 LGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
L GE+R V+R+E+R++ AKLG+ K VPK++ + ++++ IG ++EV+ VF
Sbjct: 349 LTGEIRRVNRIEQRINEAAKLGFTKIYVPKNSLPGITPP--KEIQVIGVTTIQEVLKKVF 406
>gi|225024333|ref|ZP_03713525.1| hypothetical protein EIKCOROL_01208 [Eikenella corrodens ATCC
23834]
gi|224942918|gb|EEG24127.1| hypothetical protein EIKCOROL_01208 [Eikenella corrodens ATCC
23834]
Length = 459
Score = 333 bits (853), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 190/476 (39%), Positives = 281/476 (59%), Gaps = 32/476 (6%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQ--KPEEV 167
KA +T + C++CG T +W G C C T++ A + Q +W + +E+
Sbjct: 3 KAPKTLYTCTECGGTVPKWQGKCPHCGEWNTLQEGLAAPEPKNARFQ-SWAADTTQVQEL 61
Query: 168 QPVRLLEVNK---GMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLL 224
V EV + GM +LD RVLGGGLV G+++L+GGDPG+GKSTLL
Sbjct: 62 SKVTAAEVPREPTGMGELD--------------RVLGGGLVDGAVILLGGDPGIGKSTLL 107
Query: 225 LQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKV 284
LQ A++A + V+YVSGEES +Q+ RA R+ + + + L + +E + +
Sbjct: 108 LQTVALMA------KKRKVLYVSGEESAQQVALRAQRLGLDADGVHLLAEIRLEAVQAAL 161
Query: 285 QPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGD 344
+ P ++IDSIQT+Y + + G + QV+EC + R AK+ I ++ GHVTK G
Sbjct: 162 KQHQPAVVVIDSIQTMYSDQITSAPGSVSQVRECAAQFTRMAKQMGIAMIFVGHVTKDGA 221
Query: 345 IAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKI 404
IAGPRVLEH+VD VLY EG++ S+YR++R++KNRFG+ +ELGVF M + GL+ VSNPS I
Sbjct: 222 IAGPRVLEHMVDTVLYFEGDQHSNYRMIRAIKNRFGAANELGVFAMLENGLKGVSNPSAI 281
Query: 405 FLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIIS 462
FL+ D +AG V V +GSR L+EIQAL G T R G++ +R M+++
Sbjct: 282 FLASYRDD---VAGSCVLVTQEGSRPLLVEIQALVDDAHGFTPKRLTVGLEQNRLAMLLA 338
Query: 463 VLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLG 522
VL + AG+ + +F+N V GV ++E A DLAV A+ SSF P+P + GE+GL
Sbjct: 339 VLNRHAGIACFDQDVFINAVGGVKISEPAADLAVILAMVSSFRNKPLPEKMVAFGEVGLS 398
Query: 523 GELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINV 578
GE+R V+R ++R+ KLG+++ IVPK A + F +E G + L E + +
Sbjct: 399 GEVRPVARGQERLKEAEKLGFKRAIVPK-ANLPRSRKEFPSLEIFGVERLDEAVRL 453
>gi|312865555|ref|ZP_07725782.1| DNA repair protein RadA [Streptococcus downei F0415]
gi|311099073|gb|EFQ57290.1| DNA repair protein RadA [Streptococcus downei F0415]
Length = 419
Score = 333 bits (853), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 186/418 (44%), Positives = 264/418 (63%), Gaps = 19/418 (4%)
Query: 165 EEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLL 224
E+ +P +L K + +D+ + + +E RVLGGG+VPGSLVLIGGDPG+GKSTLL
Sbjct: 4 EKTEPTKL----KDVSSVDYTRTKTDM--DEFNRVLGGGVVPGSLVLIGGDPGIGKSTLL 57
Query: 225 LQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKV 284
LQ++ +A+ V+YVSGEES EQI R++R+ E ++Y+ T++++I ++
Sbjct: 58 LQVSTQLAN------KGMVLYVSGEESAEQIKLRSERLGDFDNEFYIYAETNMQNIRTEI 111
Query: 285 QPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGD 344
+ L P LIIDSIQTV + G + QV+E T+ L++ AK NI + GHVTK G
Sbjct: 112 ERLQPDFLIIDSIQTVMSPEITSVQGSVSQVREVTAELMQLAKSNNIATFIVGHVTKEGT 171
Query: 345 IAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKI 404
+AGPR+LEH+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS++
Sbjct: 172 LAGPRMLEHMVDTVLYFEGERHHTFRILRAVKNRFGSTNEIGIFEMQTGGLVEVHNPSQL 231
Query: 405 FLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIIS 462
FL E+ + G A+ V M+G+R L E+QAL R G+ +R +I++
Sbjct: 232 FLEERLDGA---TGSAIVVTMEGTRPILAEVQALVTPTVFGNAKRTTTGLDFNRVSLIMA 288
Query: 463 VLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLG 522
VL K+ GL LQ +L GV L E A DLAVA AI SS+ E P AFIGEIGL
Sbjct: 289 VLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEAPTNAQDAFIGEIGLT 348
Query: 523 GELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
GE+R V+R+E+R++ AKLG+ + VPK+A + + ++ IG + EV+ VF
Sbjct: 349 GEIRRVNRIEQRLNEAAKLGFTRIYVPKNALHGIEIP--KSIDVIGVSTIGEVLKKVF 404
>gi|375089956|ref|ZP_09736278.1| DNA repair protein RadA [Facklamia languida CCUG 37842]
gi|374566242|gb|EHR37489.1| DNA repair protein RadA [Facklamia languida CCUG 37842]
Length = 460
Score = 333 bits (853), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 194/469 (41%), Positives = 286/469 (60%), Gaps = 22/469 (4%)
Query: 116 WVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLP-QKPEEVQPVRLLE 174
+ C CGY +W G C C + M+ A P + + P QK E + RL E
Sbjct: 8 YECLACGYESPKWLGKCPNCGAWNQMEEQPAEFRSSSPTM--AFKPSQKTGEAKAYRLDE 65
Query: 175 VNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADV 234
+ Q++ R+ F E RVLGGG+V GSLVLIGGDPG+GKSTLLLQ++ +A+
Sbjct: 66 IPS---QIEQRVATQ--FA-EFDRVLGGGVVAGSLVLIGGDPGIGKSTLLLQVSVQLAN- 118
Query: 235 HDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALII 294
LG+ V+YVSGEES+ QI RA+R+ + ++ +L + TD+ I +++ + P +II
Sbjct: 119 --LGQK--VLYVSGEESLSQIKLRAERLALDGQDFYLLAETDLAVIHQEISQIEPDIVII 174
Query: 295 DSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHI 354
DSIQT+ + G+AG + Q++ T+ L+R AK I V + GHVTK G IAGPR+LEH+
Sbjct: 175 DSIQTMTVPDNQGAAGAVSQLRAATNVLMRIAKDNQIAVFVVGHVTKEGSIAGPRMLEHM 234
Query: 355 VDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSE 414
VD VLY EGE+ + +R+LR+VKNRFGST+E+GVFEM +GL+ V NPS++FL E+ S +
Sbjct: 235 VDTVLYFEGEQHNRFRILRAVKNRFGSTNEIGVFEMLDVGLKEVRNPSQLFLEERLSGA- 293
Query: 415 FLAGLAVAVIMDGSRSFLIEIQAL---CVSGSTVSRHVNGIQASRADMIISVLMKQAGLK 471
G V ++G+R+ L E+Q+L V G+ R +GI R ++++V+ K GL
Sbjct: 294 --TGSTVVAALEGTRTILAEVQSLMTPTVYGNA-KRTASGIDYQRVALLLAVMEKHCGLL 350
Query: 472 LQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRM 531
+Q F GV L E A DLA+A +I SS+ + FIGEIGL GE+R V+++
Sbjct: 351 VQNQDAFFKTTGGVRLDEPAIDLAIAVSIASSYWNREVRVEDVFIGEIGLTGEIRRVTQI 410
Query: 532 EKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
E R+ KLG+++ +P + ++L+ L +E I K +K+ I +VF
Sbjct: 411 EDRIKEADKLGFKRVYIPYNNYQALSQLDL-AIEVIPVKTIKQAIYLVF 458
>gi|149010884|ref|ZP_01832189.1| DNA repair protein RadA [Streptococcus pneumoniae SP19-BS75]
gi|182682993|ref|YP_001834740.1| DNA repair protein RadA [Streptococcus pneumoniae CGSP14]
gi|303255540|ref|ZP_07341597.1| DNA repair protein RadA [Streptococcus pneumoniae BS455]
gi|303260659|ref|ZP_07346622.1| DNA repair: sensitivity to gamma and UV radiation [Streptococcus
pneumoniae SP-BS293]
gi|303260823|ref|ZP_07346772.1| DNA repair: sensitivity to gamma and UV radiation [Streptococcus
pneumoniae SP14-BS292]
gi|303263150|ref|ZP_07349073.1| DNA repair: sensitivity to gamma and UV radiation [Streptococcus
pneumoniae BS397]
gi|303267496|ref|ZP_07353346.1| DNA repair: sensitivity to gamma and UV radiation [Streptococcus
pneumoniae BS457]
gi|303269463|ref|ZP_07355230.1| DNA repair: sensitivity to gamma and UV radiation [Streptococcus
pneumoniae BS458]
gi|387758406|ref|YP_006065384.1| putative DNA repair protein [Streptococcus pneumoniae INV200]
gi|418138384|ref|ZP_12775216.1| DNA repair protein RadA [Streptococcus pneumoniae GA13338]
gi|418179415|ref|ZP_12815990.1| DNA repair protein RadA [Streptococcus pneumoniae GA41688]
gi|418188286|ref|ZP_12824801.1| DNA repair protein RadA [Streptococcus pneumoniae GA47373]
gi|418199214|ref|ZP_12835663.1| DNA repair protein RadA [Streptococcus pneumoniae GA47976]
gi|419513655|ref|ZP_14053283.1| DNA repair protein RadA [Streptococcus pneumoniae England14-9]
gi|147764520|gb|EDK71450.1| DNA repair protein RadA [Streptococcus pneumoniae SP19-BS75]
gi|182628327|gb|ACB89275.1| DNA repair: sensitivity to gamma and UV radiation [Streptococcus
pneumoniae CGSP14]
gi|301800995|emb|CBW33657.1| putative DNA repair protein [Streptococcus pneumoniae INV200]
gi|302597501|gb|EFL64590.1| DNA repair protein RadA [Streptococcus pneumoniae BS455]
gi|302637660|gb|EFL68146.1| DNA repair: sensitivity to gamma and UV radiation [Streptococcus
pneumoniae SP14-BS292]
gi|302638189|gb|EFL68661.1| DNA repair: sensitivity to gamma and UV radiation [Streptococcus
pneumoniae SP-BS293]
gi|302640997|gb|EFL71377.1| DNA repair: sensitivity to gamma and UV radiation [Streptococcus
pneumoniae BS458]
gi|302642971|gb|EFL73268.1| DNA repair: sensitivity to gamma and UV radiation [Streptococcus
pneumoniae BS457]
gi|302646923|gb|EFL77147.1| DNA repair: sensitivity to gamma and UV radiation [Streptococcus
pneumoniae BS397]
gi|353846837|gb|EHE26864.1| DNA repair protein RadA [Streptococcus pneumoniae GA41688]
gi|353855428|gb|EHE35397.1| DNA repair protein RadA [Streptococcus pneumoniae GA47373]
gi|353866802|gb|EHE46698.1| DNA repair protein RadA [Streptococcus pneumoniae GA47976]
gi|353906091|gb|EHE81495.1| DNA repair protein RadA [Streptococcus pneumoniae GA13338]
gi|379638145|gb|EIA02690.1| DNA repair protein RadA [Streptococcus pneumoniae England14-9]
Length = 420
Score = 333 bits (853), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 184/421 (43%), Positives = 268/421 (63%), Gaps = 26/421 (6%)
Query: 163 KPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKST 222
KP ++ V + VN+ +++ E RVLGGG+VPGSLVLIGGDPG+GKST
Sbjct: 22 KPMKLAEVTSINVNRTKTEME-----------EFNRVLGGGVVPGSLVLIGGDPGIGKST 70
Query: 223 LLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVE 282
LLLQ++ ++ V V+Y+SGEES +QI RA+R+ E +LY+ T+++ +
Sbjct: 71 LLLQVSTQLSQV------GTVLYISGEESAQQIKLRAERLGDIDSEFYLYAETNMQSVRA 124
Query: 283 KVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKS 342
+V+ + P LIIDSIQT+ ++G G + QV+E T+ L++ AK NI + + GHVTK
Sbjct: 125 EVERIQPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELMQLAKTNNIAIFIVGHVTKE 184
Query: 343 GDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPS 402
G +AGPR+LEH+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS
Sbjct: 185 GTLAGPRMLEHMVDTVLYFEGERHHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPS 244
Query: 403 KIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMI 460
++FL E+ + G ++ V M+G+R L E+QAL R G+ +RA +I
Sbjct: 245 QVFLEERLDGA---TGSSIVVTMEGTRPILAEVQALVTPTMFGNAKRTTTGLDFNRASLI 301
Query: 461 ISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIG 520
++VL K+AGL LQ +L GV L E A DLAVA AI SS+ + P F+GE+G
Sbjct: 302 MAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKPTNPQECFVGELG 361
Query: 521 LGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGF-EQMEFIGCKNLKEVINVV 579
L GE+R V+R+E+R++ AKLG+ K VPK+ SL + ++++ IG ++EV+ V
Sbjct: 362 LTGEIRRVNRIEQRINEAAKLGFTKIYVPKN---SLTGITLPKEIQVIGVTTIQEVLKKV 418
Query: 580 F 580
F
Sbjct: 419 F 419
>gi|366163188|ref|ZP_09462943.1| DNA repair protein RadA [Acetivibrio cellulolyticus CD2]
Length = 454
Score = 333 bits (853), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 192/472 (40%), Positives = 284/472 (60%), Gaps = 32/472 (6%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKR--YSAGESDEGPVVQRTWLPQKPEEVQP 169
+++ +VC DCGY W G C AC + T SAG + + + P ++Q
Sbjct: 4 HKSVFVCQDCGYESNGWLGKCPACNNWNTFTEEIQSAGINSKKDSILFDVKPVNINDIQI 63
Query: 170 VRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAA 229
G+K++D RVLGGG+V GSLVL+GGDPG+GKSTL+LQ
Sbjct: 64 ESEERYLTGIKEMD--------------RVLGGGIVKGSLVLVGGDPGIGKSTLILQ--- 106
Query: 230 IIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSP 289
I D + S ++YVSGEES++QI RADR+ + L + S T+ + I + +P
Sbjct: 107 -ICDTVKI--DSKIIYVSGEESIKQIKIRADRLGVRNSNLLMVSETNFKAIEALSENENP 163
Query: 290 RALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPR 349
+I+DSIQT++ ++ + G + QV+E TS L+R AK NI + + GHVTK G +AGPR
Sbjct: 164 ALIIVDSIQTMFKDELSSAPGSVSQVREITSGLMRIAKTKNIAIFIVGHVTKEGALAGPR 223
Query: 350 VLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQ 409
VLEH+VD VLY EGE+ SYR+LR+VKNRFGST+E+G+FEM GL V NPS + LS +
Sbjct: 224 VLEHMVDTVLYFEGERHLSYRVLRAVKNRFGSTNEIGIFEMKDAGLIEVENPSMMMLSGR 283
Query: 410 HSDSEFLAGLAVAVIMDGSRSFLIEIQAL-CVSGSTVSRHV-NGIQASRADMIISVLMKQ 467
+E + G + ++G+R LIEIQAL C + + R + GI +R ++++VL K+
Sbjct: 284 ---TESVPGSVIVSSLEGTRPMLIEIQALVCPTNFGMPRRMATGIDYNRITLLMAVLEKR 340
Query: 468 AGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRM 527
G++L ++NVV G+ + E A DL V AAI SSF P+ IGE+GL GE+R
Sbjct: 341 VGMQLHNYDAYVNVVGGLKIDEPACDLGVVAAIASSFRNRPVDLSTVLIGEVGLTGEVRA 400
Query: 528 VSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVV 579
+++++KRV A++G++ C+VP K++ +Q++ I N++ V NVV
Sbjct: 401 INQIDKRVIEAARIGFKNCVVPAGNIKAI-----KQIKEIKDINIRPVENVV 447
>gi|149919416|ref|ZP_01907897.1| predicted repair protein [Plesiocystis pacifica SIR-1]
gi|149819722|gb|EDM79147.1| predicted repair protein [Plesiocystis pacifica SIR-1]
Length = 473
Score = 333 bits (853), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 204/485 (42%), Positives = 284/485 (58%), Gaps = 49/485 (10%)
Query: 107 KKGKANRTNWVCSDCGYTDGQWWGMCRACESVGTMK----RYSAGE---------SDEGP 153
+K K +T W C+ CG T W+G C +C T++ R +AGE S EG
Sbjct: 3 RKTKKPKTIWQCTACGATTRGWFGQCPSCHEWNTIEEQVERPAAGERVVLATPGASSEGA 62
Query: 154 VVQRTWLPQKPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIG 213
VV T ++ + Q ++ G+ +LD RVLGGGLVPGSLVL+G
Sbjct: 63 VVPVTAAQEQLADAQ-----RLSTGIAELD--------------RVLGGGLVPGSLVLLG 103
Query: 214 GDPGVGKSTLLLQMAAIIADVHD-LGEPSPVVYVSGEESVEQIGNRADRM-----MIATE 267
G PG+GKSTL+LQ A + V+D PV+Y SGEES+ Q+ RA R+ A E
Sbjct: 104 GAPGIGKSTLILQACAGLVGVNDDHAHERPVLYASGEESIAQVAGRAKRLRGGSFTAADE 163
Query: 268 ELFLYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAK 327
L L + T IE I++ P+AL++DSIQTVY G G + Q++ T LL +AK
Sbjct: 164 RLLLLAETRIEAILDAATARKPKALVVDSIQTVYSDAQDGLPGNIGQIRSVTGHLLSWAK 223
Query: 328 KTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGV 387
IPV++ GHVTK G +AGPR+LEH+VD VL EG++ + R+LR+ KNRFGST ELGV
Sbjct: 224 SRAIPVIIVGHVTKDGQLAGPRLLEHMVDTVLAFEGDEERATRMLRASKNRFGSTAELGV 283
Query: 388 FEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTV 445
FEM+ GL+ + NPS++FL++ ++ G AV ++GSR L+EIQAL G +
Sbjct: 284 FEMTSQGLREIPNPSEVFLADHPEEA---IGSAVTASLEGSRPLLLEIQALLGPSPGGSP 340
Query: 446 SRHVNGIQASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFL 505
R G SR M+++VL + AGL + + +F+NV G+ L+E A DLA A+ SS L
Sbjct: 341 RRTCVGADPSRLAMLLAVLDRHAGLFVVDQDVFVNVAGGLRLSEPAADLAALLAVASSHL 400
Query: 506 EFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPK------SAEKSLATL 559
PIP G IGE+GL GELR V RME+R++ +LG+R+ IVP S ++ LA +
Sbjct: 401 RKPIPRGTIAIGEVGLTGELRRVPRMEERLAEARRLGFRRAIVPSKSVPAGSPQEGLAIV 460
Query: 560 GFEQM 564
G + +
Sbjct: 461 GVDSV 465
>gi|416197392|ref|ZP_11618602.1| DNA repair protein RadA [Neisseria meningitidis CU385]
gi|427828502|ref|ZP_18995518.1| DNA repair protein RadA [Neisseria meningitidis H44/76]
gi|316983771|gb|EFV62752.1| DNA repair protein RadA [Neisseria meningitidis H44/76]
gi|325140064|gb|EGC62593.1| DNA repair protein RadA [Neisseria meningitidis CU385]
Length = 473
Score = 333 bits (853), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 192/476 (40%), Positives = 279/476 (58%), Gaps = 32/476 (6%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKP--EEV 167
K +T + C++CG T +W G C C T++ A + Q +W + +
Sbjct: 17 KTLKTLYQCTECGGTSPKWQGKCPHCGEWNTLQESLAAPEPKNARFQ-SWAADTSTVQSL 75
Query: 168 QPVRLLEVNK---GMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLL 224
V EV + GM +LD RVLGGGLV G+++L+GGDPG+GKSTLL
Sbjct: 76 SAVTATEVPRNPTGMGELD--------------RVLGGGLVDGAVILLGGDPGIGKSTLL 121
Query: 225 LQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKV 284
LQ A +A + V+YVSGEES +Q+ RA R+ + T+ + L + +E I +
Sbjct: 122 LQTIAKMA------QSRKVLYVSGEESAQQVALRAQRLELPTDGVNLLAEIRMEAIQAAL 175
Query: 285 QPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGD 344
+ P ++IDSIQT+Y + + G + QV+EC + L R AK+ I ++L GHVTK G
Sbjct: 176 KQHQPEVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRMAKQMGIAMILVGHVTKDGA 235
Query: 345 IAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKI 404
IAGPRVLEH+VD VLY EG++ S+YR++R++KNRFG+ +ELGVF M++ GL+ VSNPS I
Sbjct: 236 IAGPRVLEHMVDTVLYFEGDQHSNYRMIRAIKNRFGAANELGVFAMTENGLKGVSNPSAI 295
Query: 405 FLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIIS 462
FL+ D+ G V V +GSR L+EIQAL G T R G++ +R M+++
Sbjct: 296 FLASYRDDT---PGSCVLVTQEGSRPLLVEIQALVDDAHGFTPKRLTVGLEQNRLAMLLA 352
Query: 463 VLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLG 522
VL + G+ + +FLN V GV + E A DLAV A+ SSF P+P GEIGL
Sbjct: 353 VLNRHGGIACFDQDVFLNAVGGVKIGEPAADLAVILAMLSSFRNRPMPEKTVVFGEIGLS 412
Query: 523 GELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINV 578
GE+R V+R ++R+ KLG+++ IVPK+ A F ++ G +L+E I++
Sbjct: 413 GEVRPVARGQERLKEAEKLGFKRAIVPKANMPRNAK-EFPNLKIYGVSSLQEAIDI 467
>gi|307707919|ref|ZP_07644394.1| DNA repair protein RadA [Streptococcus mitis NCTC 12261]
gi|307615984|gb|EFN95182.1| DNA repair protein RadA [Streptococcus mitis NCTC 12261]
Length = 407
Score = 333 bits (853), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 183/420 (43%), Positives = 267/420 (63%), Gaps = 24/420 (5%)
Query: 163 KPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKST 222
KP ++ V + VN+ +++ E RVLGGG+VPGSLVLIGGDPG+GKST
Sbjct: 9 KPMKLAEVTSINVNRTKTEME-----------EFNRVLGGGVVPGSLVLIGGDPGIGKST 57
Query: 223 LLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVE 282
LLLQ++ ++ V V+YVSGEES +QI RA+R+ E +LY+ T+++ +
Sbjct: 58 LLLQVSTQLSQV------GTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSVRT 111
Query: 283 KVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKS 342
+V+ + P LIIDSIQT+ ++G G + QV+E T+ L++ AK NI + + GHVTK
Sbjct: 112 EVERIQPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELMQLAKTNNIAIFIVGHVTKE 171
Query: 343 GDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPS 402
G +AGPR+LEH+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS
Sbjct: 172 GTLAGPRMLEHMVDTVLYFEGERHHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPS 231
Query: 403 KIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMI 460
++FL E+ + G ++ V M+G+R L E+QAL R G+ +RA +I
Sbjct: 232 QVFLEERLDGA---TGSSIVVTMEGTRPILAEVQALVTPTMFGNAKRTTTGLDFNRASLI 288
Query: 461 ISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIG 520
++VL K+AGL LQ +L GV L E A DLAVA AI SS+ + P F+GE+G
Sbjct: 289 MAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKPTNPQECFVGELG 348
Query: 521 LGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
L GE+R V+R+E+R++ AKLG+ K VPK++ + ++++ IG ++EV+ VF
Sbjct: 349 LTGEIRRVNRIEQRINEAAKLGFTKIYVPKNSLTGITPP--KEIQVIGVTTIQEVLKKVF 406
>gi|406577911|ref|ZP_11053488.1| DNA repair protein RadA [Streptococcus sp. GMD6S]
gi|404458941|gb|EKA05322.1| DNA repair protein RadA [Streptococcus sp. GMD6S]
Length = 397
Score = 333 bits (853), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 179/388 (46%), Positives = 255/388 (65%), Gaps = 13/388 (3%)
Query: 195 EVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQ 254
E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ ++ V V+YVSGEES +Q
Sbjct: 20 EFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSQV------GTVLYVSGEESAQQ 73
Query: 255 IGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQ 314
I RA+R+ E +LY+ T+++ + +V+ + P LIIDSIQT+ ++G G + Q
Sbjct: 74 IKLRAERLGDIDSEFYLYAETNMQSVRAEVERIQPDFLIIDSIQTIMSPEISGVQGSVSQ 133
Query: 315 VKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRS 374
V+E T+ L++ AK NI + + GHVTK G +AGPR+LEH+VD VLY EGE+ ++R+LR+
Sbjct: 134 VREVTAELMQLAKTNNIAIFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGERHHTFRILRA 193
Query: 375 VKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIE 434
VKNRFGST+E+G+FEM GL V NPS++FL E+ + G ++ V M+G+R L E
Sbjct: 194 VKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGA---TGSSIVVTMEGTRPILAE 250
Query: 435 IQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAG 492
+QAL R G+ +RA +I++VL K+AGL LQ +L GV L E A
Sbjct: 251 VQALVTPTMFGNAKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAI 310
Query: 493 DLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSA 552
DLAVA AI SS+ + P F+GE+GL GE+R V+R+E+R++ AKLG+ K VPK++
Sbjct: 311 DLAVAVAIASSYKDKPTNPQECFVGELGLTGEIRRVNRIEQRINEAAKLGFTKIYVPKNS 370
Query: 553 EKSLATLGFEQMEFIGCKNLKEVINVVF 580
+ +++E IG ++EV+ VF
Sbjct: 371 LTGITPP--KEIEVIGVTTIQEVLKKVF 396
>gi|301299874|ref|ZP_07206108.1| DNA repair protein RadA [Lactobacillus salivarius ACS-116-V-Col5a]
gi|417788557|ref|ZP_12436240.1| DNA repair protein RadA [Lactobacillus salivarius NIAS840]
gi|418961732|ref|ZP_13513617.1| DNA repair protein RadA [Lactobacillus salivarius SMXD51]
gi|300852545|gb|EFK80195.1| DNA repair protein RadA [Lactobacillus salivarius ACS-116-V-Col5a]
gi|334308734|gb|EGL99720.1| DNA repair protein RadA [Lactobacillus salivarius NIAS840]
gi|380343827|gb|EIA32175.1| DNA repair protein RadA [Lactobacillus salivarius SMXD51]
Length = 457
Score = 333 bits (853), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 188/476 (39%), Positives = 288/476 (60%), Gaps = 30/476 (6%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTM-----KRYSAGESDEGPVVQRTWLPQKPEEV 167
+T +VC +C Y ++ G C C S ++ K+ S+ ++ P V + KP+ +
Sbjct: 5 KTRYVCQNCEYISPRYLGRCPNCGSWNSLVEEIEKKESSTKAQ--PRVSISGTTVKPKLI 62
Query: 168 QPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQM 227
V +E + L+ E+ RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ+
Sbjct: 63 DDVSTVETPRFKTNLE-----------ELNRVLGGGIVPGSLVLIGGDPGIGKSTLLLQV 111
Query: 228 AAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPL 287
+ + LG+ V+YVSGEES QI RADR+ + EL+LY TD++ I + ++ L
Sbjct: 112 SG---QLSTLGKK--VLYVSGEESATQIKLRADRLGVHGTELYLYPETDMDSIRKNIELL 166
Query: 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAG 347
P ++IDS+QT+ + + G + Q++E T L++ AK I V + GHVTK G IAG
Sbjct: 167 KPDFVVIDSVQTMQEPEMTAAVGSVSQIREVTGDLMQIAKTNGITVFVVGHVTKGGAIAG 226
Query: 348 PRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLS 407
P++LEH+VD VLY EG++ ++R+LR+VKNRFGST+E+G+FEM GL V+NPS+IFL
Sbjct: 227 PKILEHMVDTVLYFEGDQHRTFRILRAVKNRFGSTNEIGIFEMKNGGLSEVANPSEIFLE 286
Query: 408 EQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLM 465
E+ + G AV ++G+R L+E+QAL + R G+ +R ++++VL
Sbjct: 287 ERLKGA---TGSAVVASLEGTRPILVELQALVTPTAFGNAKRTTTGLDHNRVALLMAVLE 343
Query: 466 KQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGEL 525
K+AGL LQ +L GV L E A DLA+A ++ SS+ + FIGE+GL GE+
Sbjct: 344 KRAGLLLQNQDAYLKAAGGVKLDEPAIDLAIAVSLVSSYRDAETRPTDCFIGEVGLTGEI 403
Query: 526 RMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVFT 581
R V+R+E+RV AKLG+++ +PK+ + +++E +G L + + ++F+
Sbjct: 404 RRVNRIEQRVVEAAKLGFKRVFLPKNNLDGW--MPPKEIEVVGVSTLNQALKLIFS 457
>gi|124003909|ref|ZP_01688756.1| DNA repair protein RadA [Microscilla marina ATCC 23134]
gi|123990488|gb|EAY29968.1| DNA repair protein RadA [Microscilla marina ATCC 23134]
Length = 464
Score = 333 bits (853), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 182/455 (40%), Positives = 279/455 (61%), Gaps = 36/455 (7%)
Query: 116 WVCSDCGYTDGQWWGMCRACESVGTM-----KRYSAGESDEGPVVQRTWLPQKPEEVQPV 170
+ C CG+ +W G C +C+S T+ ++ A + D R + KP
Sbjct: 8 YFCQSCGHQSPKWMGKCPSCDSWNTLVEEIVQKEEAKKGDWKTSTSRK-VANKP------ 60
Query: 171 RLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAI 230
RLL+ K Q P E+ RVLGGG+VPGSLVLIGG+PG+GKSTL+LQ+A
Sbjct: 61 RLLKEIKFSAQERVITP-----DEELNRVLGGGIVPGSLVLIGGEPGIGKSTLMLQIALT 115
Query: 231 IADVHDLGEPSPVVYVSGEESVEQIGNRADR-------MMIATEELFLYSSTDIEDIVEK 283
+ H + V+YVSGEES +QI RADR ++ + E ++ + T ++I ++
Sbjct: 116 M---HQM----KVLYVSGEESEQQIKMRADRITQQNEGLVASRENCYILTETSTQNIFKQ 168
Query: 284 VQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSG 343
++ +P+ L+IDSIQT++ + SAG + QV+ECT+ LL+FAK++ PV L GH+ K G
Sbjct: 169 IEEFAPQILVIDSIQTLHSSFLESSAGTVSQVRECTAELLKFAKESQTPVFLIGHINKEG 228
Query: 344 DIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSK 403
IAGP+VLEH+VD VL EG++ YR+LR+ KNRFGST EL ++EM GL+ VSNPS+
Sbjct: 229 SIAGPKVLEHMVDTVLQFEGDRHLVYRILRATKNRFGSTSELAIYEMLGDGLREVSNPSE 288
Query: 404 IFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMII 461
I +S++ D L+G+++ ++G+R LIE+Q+L + + T R G R +M++
Sbjct: 289 ILISQRDDD---LSGISIGATLEGNRPLLIEVQSLVSTSNYGTPQRSSTGFDGKRLNMLL 345
Query: 462 SVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGL 521
+VL K+ G L +FLN+ G+ + + A DLAV ++ SS+ + + N + F E+GL
Sbjct: 346 AVLEKRGGFMLGNQDVFLNITGGLKIEDPAIDLAVCVSVASSYNDISVSNDMCFAAEVGL 405
Query: 522 GGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSL 556
GGE+R V+++E R+S KLG+++ + K A KS+
Sbjct: 406 GGEIRAVNKVENRISEAEKLGFKEIYISKYALKSV 440
>gi|372324675|ref|ZP_09519264.1| RadA-like DNA repair protein [Oenococcus kitaharae DSM 17330]
gi|366983483|gb|EHN58882.1| RadA-like DNA repair protein [Oenococcus kitaharae DSM 17330]
Length = 468
Score = 333 bits (853), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 190/478 (39%), Positives = 278/478 (58%), Gaps = 40/478 (8%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRAC--------ESV--GTMKRYSAGESDEGPVVQRTWLPQ 162
+T +VCS+CGYT + G C C E + T+ A S +G V + PQ
Sbjct: 5 KTQFVCSNCGYTSAGYLGRCPNCGQWNTLVEEKIVPDTVVNRKARISLDGRVAK----PQ 60
Query: 163 KPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKST 222
+ E+ V GM++L+ RVLGGG+VPGSLVLIGGDPG+GKST
Sbjct: 61 RISEISGNETPRVQTGMQELN--------------RVLGGGIVPGSLVLIGGDPGIGKST 106
Query: 223 LLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVE 282
L+LQ++ + + V+YVSGEES QI RADR+ + +++ +Y TD++ I
Sbjct: 107 LMLQVSGQLTETG-----GSVLYVSGEESANQIKLRADRLGVGSDDFVVYPETDMQQIES 161
Query: 283 KVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKS 342
+Q + P L+IDS+QT+ + G + QV+E T+ L++ AK I + + GHVTK
Sbjct: 162 VIQQMEPDFLVIDSVQTMQEPDLQSPIGSVAQVREVTADLMQIAKTNGITIFIVGHVTKD 221
Query: 343 GDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPS 402
G IAGP++LEH+VD VLY EG+ YR+LR+VKNRFGST+ELG+FEM GL+ VSNPS
Sbjct: 222 GAIAGPKILEHMVDTVLYFEGDANYKYRILRTVKNRFGSTNELGIFEMRDRGLREVSNPS 281
Query: 403 KIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMI 460
+IFL E+ + + G ++ M+G+R L+E+QAL R G+ +R I
Sbjct: 282 EIFLEERLAGA---TGSSITASMEGTRPILVEVQALVAPTVFGNAQRVTTGVDRNRVAQI 338
Query: 461 ISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIG 520
++VL K A L LQ + + GV + E A DLA+A A+ SS+ E F+GE+G
Sbjct: 339 LAVLEKHANLLLQNQDAHVRITGGVKIDEPAADLAIALAVASSYHEKATSPSDVFLGEVG 398
Query: 521 LGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINV 578
LGGE+R +S +E R+ AKLG+++ I+ K+ T+ E ++ IG L+E + +
Sbjct: 399 LGGEVRSISLIEDRLKETAKLGFKRAIISKN--NLPGTILPEGLQVIGVATLEEALKI 454
>gi|417918043|ref|ZP_12561596.1| DNA repair protein RadA [Streptococcus parasanguinis SK236]
gi|342829034|gb|EGU63395.1| DNA repair protein RadA [Streptococcus parasanguinis SK236]
Length = 404
Score = 333 bits (853), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 179/388 (46%), Positives = 253/388 (65%), Gaps = 13/388 (3%)
Query: 195 EVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQ 254
E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ ++ V V+YVSGEES +Q
Sbjct: 28 EFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSQV------GTVLYVSGEESAQQ 81
Query: 255 IGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQ 314
I RA+R+ E +LY+ T+++ + +V+ + P LIIDSIQT+ ++G G + Q
Sbjct: 82 IKLRAERLGDIDSEFYLYAETNMQSVRAEVERIQPNFLIIDSIQTIMSPEISGVQGSVSQ 141
Query: 315 VKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRS 374
V+E T+ L++ AK NI + + GHVTK G +AGPR+LEH+VD VLY EGE+ ++R+LR+
Sbjct: 142 VREVTAELMQLAKTNNIAIFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGERHHTFRILRA 201
Query: 375 VKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIE 434
VKNRFGST+E+G+FEM GL V NPS++FL E+ + G ++ V M+G+R L E
Sbjct: 202 VKNRFGSTNEIGIFEMQSSGLVEVLNPSQVFLEERLDGA---TGSSIVVTMEGTRPILAE 258
Query: 435 IQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAG 492
+QAL R G+ +RA +I++VL K+AGL LQ +L GV L E A
Sbjct: 259 VQALVTPTMFGNAKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAI 318
Query: 493 DLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSA 552
DLAVA AI SS+ + P F+GE+GL GE+R V+R+E+R++ AKLG+ K VPK++
Sbjct: 319 DLAVAVAIASSYKDKPTNPQECFVGELGLTGEVRRVNRIEQRINEAAKLGFTKIYVPKNS 378
Query: 553 EKSLATLGFEQMEFIGCKNLKEVINVVF 580
+ T ++ +G L EV+ VF
Sbjct: 379 LTGITTPS--GIQVVGVSTLAEVLKKVF 404
>gi|227891230|ref|ZP_04009035.1| DNA repair protein RadA [Lactobacillus salivarius ATCC 11741]
gi|227867104|gb|EEJ74525.1| DNA repair protein RadA [Lactobacillus salivarius ATCC 11741]
Length = 460
Score = 333 bits (853), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 188/476 (39%), Positives = 287/476 (60%), Gaps = 30/476 (6%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTM-----KRYSAGESDEGPVVQRTWLPQKPEEV 167
+T +VC +C Y ++ G C C S ++ K+ S ++ P V + KP+ +
Sbjct: 8 KTRYVCQNCEYISPRYLGRCPNCGSWNSLVEEIEKKESTTKAQ--PRVSISGTTVKPKLI 65
Query: 168 QPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQM 227
V +E + L+ E+ RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ+
Sbjct: 66 DDVSTVETPRFKTNLE-----------ELNRVLGGGIVPGSLVLIGGDPGIGKSTLLLQV 114
Query: 228 AAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPL 287
+ + LG+ V+YVSGEES QI RADR+ + EL+LY TD++ I + ++ L
Sbjct: 115 SG---QLSTLGKK--VLYVSGEESATQIKLRADRLGVHGTELYLYPETDMDSIRKNIELL 169
Query: 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAG 347
P ++IDS+QT+ + + G + Q++E T L++ AK I V + GHVTK G IAG
Sbjct: 170 KPDFVVIDSVQTMQEPEMTAAVGSVSQIREVTGDLMQIAKTNGITVFVVGHVTKGGAIAG 229
Query: 348 PRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLS 407
P++LEH+VD VLY EG++ ++R+LR+VKNRFGST+E+G+FEM GL V+NPS+IFL
Sbjct: 230 PKILEHMVDTVLYFEGDQHRTFRILRAVKNRFGSTNEIGIFEMKNGGLSEVANPSEIFLE 289
Query: 408 EQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLM 465
E+ + G AV ++G+R L+E+QAL + R G+ +R ++++VL
Sbjct: 290 ERLKGA---TGSAVVASLEGTRPILVELQALVTPTAFGNAKRTTTGLDHNRVALLMAVLE 346
Query: 466 KQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGEL 525
K+AGL LQ +L GV L E A DLA+A ++ SS+ + FIGE+GL GE+
Sbjct: 347 KRAGLLLQNQDAYLKAAGGVKLDEPAIDLAIAVSLVSSYRDAETRPTDCFIGEVGLTGEI 406
Query: 526 RMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVFT 581
R V+R+E+RV AKLG+++ +PK+ + +++E +G L + + ++F+
Sbjct: 407 RRVNRIEQRVVEAAKLGFKRVFLPKNNLDGW--MPPKEIEVVGVSTLNQALKLIFS 460
>gi|421557006|ref|ZP_16002915.1| DNA repair protein RadA [Neisseria meningitidis 80179]
gi|402335691|gb|EJU70955.1| DNA repair protein RadA [Neisseria meningitidis 80179]
Length = 459
Score = 333 bits (853), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 192/476 (40%), Positives = 280/476 (58%), Gaps = 32/476 (6%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKP--EEV 167
K +T + C++CG T +W G C C T++ A + Q +W + +
Sbjct: 3 KTLKTLYQCTECGGTSPKWQGKCPHCGEWNTLQESLAAPEPKNARFQ-SWAADTSTVQSL 61
Query: 168 QPVRLLEVNK---GMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLL 224
V EV + GM +LD RVLGGGLV G+++L+GGDPG+GKSTLL
Sbjct: 62 STVTATEVPRNPTGMGELD--------------RVLGGGLVDGAVILLGGDPGIGKSTLL 107
Query: 225 LQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKV 284
LQ A +A + V+YVSGEES +Q+ RA R+ + T+ + L + +E I +
Sbjct: 108 LQTIAKMA------QSRKVLYVSGEESAQQVALRAQRLELPTDGVNLLAEIRMEAIQAAL 161
Query: 285 QPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGD 344
+ P ++IDSIQT+Y + + G + QV+EC + L R AK+ I ++L GHVTK G
Sbjct: 162 KQHQPEVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRMAKQMGIAMILVGHVTKDGA 221
Query: 345 IAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKI 404
IAGPRVLEH+VD VLY EG++ S+YR++R++KNRFG+ +ELGVF M++ GL+ VSNPS I
Sbjct: 222 IAGPRVLEHMVDTVLYFEGDQHSNYRMIRAIKNRFGAANELGVFAMTENGLKGVSNPSAI 281
Query: 405 FLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIIS 462
FL+ D+ G V V +GSR L+EIQAL G T R G++ +R M+++
Sbjct: 282 FLASYRDDT---PGSCVLVTQEGSRPLLVEIQALVDDAHGFTPKRLTVGLEQNRLAMLLA 338
Query: 463 VLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLG 522
VL + G+ + +FLN V GV + E A DLAV A+ SSF P+P + GEIGL
Sbjct: 339 VLNRHGGIACFDQDVFLNAVGGVKIGEPAADLAVILAMLSSFRNRPLPEKMVAFGEIGLS 398
Query: 523 GELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINV 578
GE+R V+R ++R+ KLG+++ IVPK+ A F ++ G +L+E I++
Sbjct: 399 GEVRPVARGQERLKEAEKLGFKRAIVPKANMPRNAK-EFPNLKIYGVSSLQEAIDI 453
>gi|300362342|ref|ZP_07058518.1| DNA repair protein RadA [Lactobacillus gasseri JV-V03]
gi|300353333|gb|EFJ69205.1| DNA repair protein RadA [Lactobacillus gasseri JV-V03]
Length = 459
Score = 333 bits (853), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 189/473 (39%), Positives = 273/473 (57%), Gaps = 22/473 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T + C +CGY + G C C + + + + L K PV+L
Sbjct: 5 KTRYKCRNCGYISASYLGRCPNCGAWNQFEEETQEVKKVSTKATASRLMTKIGNNDPVKL 64
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
EV K K+ P E+ RVLGGG+VPGSLVLIGGDPG+GKSTL+LQ+ +A
Sbjct: 65 NEV-KAEKEKRIVTPFE-----ELNRVLGGGIVPGSLVLIGGDPGIGKSTLMLQITGALA 118
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
H V+YVSGEES QI RADR+ ++ + LY T++++I E++ + P L
Sbjct: 119 KEHS------VLYVSGEESASQIKMRADRLGVSNSGILLYPETNMQNIREQIDEIKPDFL 172
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
+IDSIQT+ + G QV+E TS L++ AK I + GHVTK G IAGP+++E
Sbjct: 173 VIDSIQTMNEPSLDSMVGSASQVREVTSELMKIAKNDQITTFVIGHVTKEGAIAGPKIME 232
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EG+ SYR+LRSVKNRFG+ +E+G+FEM GL V+NPS IFL E+ +
Sbjct: 233 HMVDTVLYFEGDGHHSYRILRSVKNRFGAANEIGMFEMKNEGLTEVNNPSAIFLDERLPN 292
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMKQAGL 470
S G AV V ++G+R L +IQAL + R +G+ +R ++++VL K+ L
Sbjct: 293 S---TGSAVVVSLEGTRPLLADIQALVTPTAFGYAKRTTSGLDFNRVALLLAVLEKRGNL 349
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ FL G+ L E A DLA+ A+ SS+ I + F+GE+GL GE+R V++
Sbjct: 350 MLQNQDAFLTATGGIKLNEPAIDLAICMAVASSYKNKEISSTDCFVGEVGLTGEIRRVNQ 409
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLAT--LGFEQMEFIGCKNLKEVINVVFT 581
+E RV AK+G+++ +PK +L T ++E IG +L + + +VF
Sbjct: 410 IEARVKEAAKVGFKRIFIPK---HNLTTELKNNSEIEVIGVASLPQALKLVFN 459
>gi|226940958|ref|YP_002796032.1| DNA repair protein RadA [Laribacter hongkongensis HLHK9]
gi|226715885|gb|ACO75023.1| RadA [Laribacter hongkongensis HLHK9]
Length = 453
Score = 333 bits (853), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 185/467 (39%), Positives = 270/467 (57%), Gaps = 25/467 (5%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVR 171
++T +VCSDCG +W G C C + T+ + G + + + + V
Sbjct: 4 SKTVYVCSDCGTQSPKWQGQCPGCGAWNTLVETVVEPARAGGRFESLSVTSTVQTLADVE 63
Query: 172 LLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAII 231
+E + +D E+ RVLGGGLV G++VLIGGDPG+GKSTLLLQ A I
Sbjct: 64 AVEAPRAPTGID-----------ELDRVLGGGLVRGAVVLIGGDPGIGKSTLLLQALATI 112
Query: 232 ADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRA 291
G V+YV+GEES Q+ RA R+ + + L + ++ I+ ++ +P
Sbjct: 113 ------GSSRKVLYVTGEESAAQVALRASRLAVDARSVRLLAEIRLDQILATLRHEAPEV 166
Query: 292 LIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVL 351
+IDSIQT+Y + + G + QV+EC + L R AK+T I +++ GHVTK G +AGPRVL
Sbjct: 167 AVIDSIQTMYTDALQSAPGSVAQVRECAAQLTRVAKQTGITIVMVGHVTKEGALAGPRVL 226
Query: 352 EHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHS 411
EHIVD+VLY EG+ SS+R++R++KNRFG+ +ELGVF M+ GL+ VSNPS IFLS
Sbjct: 227 EHIVDSVLYFEGDTHSSFRMIRAIKNRFGAVNELGVFAMTDRGLRGVSNPSAIFLSSHRD 286
Query: 412 DSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVLMKQAG 469
D + G V V +G+R L+EIQAL R G++ +R M+++VL + AG
Sbjct: 287 D---VPGSCVLVTQEGTRPLLVEIQALVDEAHAPQPRRLSVGLEQNRLAMLLAVLHRHAG 343
Query: 470 LKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVS 529
+ + +F+N V GV ++E A DLAV AI SS P+P + GE+GL GE+R V
Sbjct: 344 VACFDQDVFVNAVGGVKISEPAADLAVLLAIASSLRNRPLPAKMVVFGEVGLAGEVRPVQ 403
Query: 530 RMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVI 576
R ++R+ AKLG+ + IVP + + G E ME + + L E +
Sbjct: 404 RGQERLKEAAKLGFTRAIVPAANQPK---GGIEGMEIVAVERLDEAV 447
>gi|225860066|ref|YP_002741575.1| DNA repair protein RadA [Streptococcus pneumoniae Taiwan19F-14]
gi|298229194|ref|ZP_06962875.1| DNA repair protein RadA [Streptococcus pneumoniae str. Canada
MDR_19F]
gi|298254026|ref|ZP_06977612.1| DNA repair protein RadA [Streptococcus pneumoniae str. Canada
MDR_19A]
gi|298501814|ref|YP_003723754.1| DNA repair protein RadA [Streptococcus pneumoniae TCH8431/19A]
gi|387787229|ref|YP_006252297.1| DNA repair protein RadA [Streptococcus pneumoniae ST556]
gi|417311621|ref|ZP_12098338.1| DNA repair protein RadA [Streptococcus pneumoniae GA04375]
gi|418081936|ref|ZP_12719138.1| DNA repair protein RadA [Streptococcus pneumoniae GA44288]
gi|418084128|ref|ZP_12721316.1| DNA repair protein RadA [Streptococcus pneumoniae GA47281]
gi|418092891|ref|ZP_12730023.1| DNA repair protein RadA [Streptococcus pneumoniae GA49138]
gi|418099619|ref|ZP_12736708.1| DNA repair protein RadA [Streptococcus pneumoniae 7286-06]
gi|418117976|ref|ZP_12754938.1| DNA repair protein RadA [Streptococcus pneumoniae GA18523]
gi|418140634|ref|ZP_12777450.1| DNA repair protein RadA [Streptococcus pneumoniae GA13455]
gi|418149607|ref|ZP_12786363.1| DNA repair protein RadA [Streptococcus pneumoniae GA14798]
gi|418151779|ref|ZP_12788519.1| DNA repair protein RadA [Streptococcus pneumoniae GA16121]
gi|418156238|ref|ZP_12792957.1| DNA repair protein RadA [Streptococcus pneumoniae GA16833]
gi|418163379|ref|ZP_12800055.1| DNA repair protein RadA [Streptococcus pneumoniae GA17371]
gi|418170258|ref|ZP_12806889.1| DNA repair protein RadA [Streptococcus pneumoniae GA19451]
gi|418194840|ref|ZP_12831321.1| DNA repair protein RadA [Streptococcus pneumoniae GA47688]
gi|418196947|ref|ZP_12833414.1| DNA repair protein RadA [Streptococcus pneumoniae GA47778]
gi|418222338|ref|ZP_12848984.1| DNA repair protein RadA [Streptococcus pneumoniae 5185-06]
gi|418226636|ref|ZP_12853257.1| DNA repair protein RadA [Streptococcus pneumoniae 3063-00]
gi|419424102|ref|ZP_13964306.1| DNA repair protein RadA [Streptococcus pneumoniae 7533-05]
gi|419426233|ref|ZP_13966419.1| DNA repair protein RadA [Streptococcus pneumoniae 5652-06]
gi|419434942|ref|ZP_13975040.1| DNA repair protein RadA [Streptococcus pneumoniae 8190-05]
gi|419437084|ref|ZP_13977161.1| DNA repair protein RadA [Streptococcus pneumoniae GA13499]
gi|419443688|ref|ZP_13983703.1| DNA repair protein RadA [Streptococcus pneumoniae GA19923]
gi|419445800|ref|ZP_13985806.1| DNA repair protein RadA [Streptococcus pneumoniae 7879-04]
gi|419447953|ref|ZP_13987951.1| DNA repair protein RadA [Streptococcus pneumoniae 4075-00]
gi|419450035|ref|ZP_13990025.1| DNA repair protein RadA [Streptococcus pneumoniae EU-NP02]
gi|419500800|ref|ZP_14040487.1| DNA repair protein RadA [Streptococcus pneumoniae GA47628]
gi|225726622|gb|ACO22473.1| DNA repair protein RadA [Streptococcus pneumoniae Taiwan19F-14]
gi|298237409|gb|ADI68540.1| DNA repair protein RadA [Streptococcus pneumoniae TCH8431/19A]
gi|327390439|gb|EGE88779.1| DNA repair protein RadA [Streptococcus pneumoniae GA04375]
gi|353757373|gb|EHD37966.1| DNA repair protein RadA [Streptococcus pneumoniae GA44288]
gi|353760431|gb|EHD41007.1| DNA repair protein RadA [Streptococcus pneumoniae GA47281]
gi|353767824|gb|EHD48354.1| DNA repair protein RadA [Streptococcus pneumoniae GA49138]
gi|353773618|gb|EHD54113.1| DNA repair protein RadA [Streptococcus pneumoniae 7286-06]
gi|353793306|gb|EHD73673.1| DNA repair protein RadA [Streptococcus pneumoniae GA18523]
gi|353808825|gb|EHD89089.1| DNA repair protein RadA [Streptococcus pneumoniae GA13455]
gi|353817749|gb|EHD97949.1| DNA repair protein RadA [Streptococcus pneumoniae GA14798]
gi|353818424|gb|EHD98622.1| DNA repair protein RadA [Streptococcus pneumoniae GA16121]
gi|353825515|gb|EHE05679.1| DNA repair protein RadA [Streptococcus pneumoniae GA16833]
gi|353832805|gb|EHE12917.1| DNA repair protein RadA [Streptococcus pneumoniae GA17371]
gi|353839047|gb|EHE19122.1| DNA repair protein RadA [Streptococcus pneumoniae GA19451]
gi|353862959|gb|EHE42888.1| DNA repair protein RadA [Streptococcus pneumoniae GA47688]
gi|353866062|gb|EHE45966.1| DNA repair protein RadA [Streptococcus pneumoniae GA47778]
gi|353881426|gb|EHE61239.1| DNA repair protein RadA [Streptococcus pneumoniae 5185-06]
gi|353883841|gb|EHE63643.1| DNA repair protein RadA [Streptococcus pneumoniae 3063-00]
gi|379136971|gb|AFC93762.1| DNA repair protein RadA [Streptococcus pneumoniae ST556]
gi|379542025|gb|EHZ07189.1| DNA repair protein RadA [Streptococcus pneumoniae GA13499]
gi|379571381|gb|EHZ36338.1| DNA repair protein RadA [Streptococcus pneumoniae GA19923]
gi|379603045|gb|EHZ67814.1| DNA repair protein RadA [Streptococcus pneumoniae GA47628]
gi|379615258|gb|EHZ79964.1| DNA repair protein RadA [Streptococcus pneumoniae 7879-04]
gi|379617465|gb|EHZ82153.1| DNA repair protein RadA [Streptococcus pneumoniae 8190-05]
gi|379619890|gb|EHZ84557.1| DNA repair protein RadA [Streptococcus pneumoniae 5652-06]
gi|379621520|gb|EHZ86165.1| DNA repair protein RadA [Streptococcus pneumoniae 7533-05]
gi|379624765|gb|EHZ89393.1| DNA repair protein RadA [Streptococcus pneumoniae 4075-00]
gi|379626066|gb|EHZ90690.1| DNA repair protein RadA [Streptococcus pneumoniae EU-NP02]
Length = 420
Score = 333 bits (853), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 184/421 (43%), Positives = 268/421 (63%), Gaps = 26/421 (6%)
Query: 163 KPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKST 222
KP ++ V + VN+ +++ E RVLGGG+VPGSLVLIGGDPG+GKST
Sbjct: 22 KPMKLAEVTSINVNRTKTEME-----------EFNRVLGGGVVPGSLVLIGGDPGIGKST 70
Query: 223 LLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVE 282
LLLQ++ ++ V V+YVSGEES +QI RA+R+ E +LY+ T+++ +
Sbjct: 71 LLLQVSTQLSQV------GTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSVRA 124
Query: 283 KVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKS 342
+V+ + P LIIDSIQT+ ++G G + QV+E T+ L++ AK NI + + GHVTK
Sbjct: 125 EVERIQPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELMQLAKTNNIAIFIVGHVTKE 184
Query: 343 GDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPS 402
G +AGPR+LEH+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS
Sbjct: 185 GTLAGPRMLEHMVDTVLYFEGERHHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPS 244
Query: 403 KIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMI 460
++FL E+ + G ++ V M+G+R L E+QAL R G+ +RA +I
Sbjct: 245 QVFLEERLDGA---TGSSIVVTMEGTRPILAEVQALVTPTMFGNAKRTTTGLDFNRASLI 301
Query: 461 ISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIG 520
++VL K+AGL LQ +L GV L E A DLAVA AI SS+ + P F+GE+G
Sbjct: 302 MAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKPTNPQECFVGELG 361
Query: 521 LGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGF-EQMEFIGCKNLKEVINVV 579
L GE+R V+R+E+R++ AKLG+ K VP++ SL + ++++ IG ++EV+ V
Sbjct: 362 LTGEIRRVNRIEQRINETAKLGFTKIYVPQN---SLTGITLPKEIQVIGVTTIQEVLKKV 418
Query: 580 F 580
F
Sbjct: 419 F 419
>gi|421542190|ref|ZP_15988300.1| DNA repair protein RadA [Neisseria meningitidis NM255]
gi|402318126|gb|EJU53651.1| DNA repair protein RadA [Neisseria meningitidis NM255]
Length = 459
Score = 333 bits (853), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 192/476 (40%), Positives = 279/476 (58%), Gaps = 32/476 (6%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKP--EEV 167
K +T + C++CG T +W G C C T++ A + Q +W + +
Sbjct: 3 KTLKTLYQCTECGGTSPKWQGKCPHCGEWNTLQESLAAPEPKNARFQ-SWAADTSTVQSL 61
Query: 168 QPVRLLEVNK---GMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLL 224
V EV + GM +LD RVLGGGLV G+++L+GGDPG+GKSTLL
Sbjct: 62 SSVTATEVPRNPTGMGELD--------------RVLGGGLVDGAVILLGGDPGIGKSTLL 107
Query: 225 LQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKV 284
LQ A +A + V+YVSGEES +Q+ RA R+ + T+ + L + +E I +
Sbjct: 108 LQTIAKMA------QSRKVLYVSGEESAQQVALRAQRLELPTDGVNLLAEIRMEAIQAAL 161
Query: 285 QPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGD 344
+ P ++IDSIQT+Y + + G + QV+EC + L R AK+ I ++L GHVTK G
Sbjct: 162 KQHQPEVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRMAKQMGIAMILVGHVTKDGA 221
Query: 345 IAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKI 404
IAGPRVLEH+VD VLY EG++ S+YR++R++KNRFG+ +ELGVF M++ GL+ VSNPS I
Sbjct: 222 IAGPRVLEHMVDTVLYFEGDQHSNYRMIRAIKNRFGAANELGVFAMTENGLKGVSNPSAI 281
Query: 405 FLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIIS 462
FL+ D+ G V V +GSR L+EIQAL G T R G++ +R M+++
Sbjct: 282 FLASYRDDT---PGSCVLVTQEGSRPLLVEIQALVDDAHGFTPKRLTVGLEQNRLAMLLA 338
Query: 463 VLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLG 522
VL + G+ + +FLN V GV + E A DLAV A+ SSF P+P + GEIGL
Sbjct: 339 VLNRHGGIACFDQDVFLNAVGGVKIGEPAADLAVILAMLSSFRNRPLPEKMVAFGEIGLS 398
Query: 523 GELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINV 578
GE+R V+R ++R+ KLG+++ IVPK A F ++ G +L+E I++
Sbjct: 399 GEVRPVARGQERLKEAEKLGFKRAIVPK-ANMPRNVKEFPNLKIYGVSSLQEAIDI 453
>gi|422822561|ref|ZP_16870754.1| DNA repair protein RadA [Streptococcus sanguinis SK353]
gi|324989831|gb|EGC21774.1| DNA repair protein RadA [Streptococcus sanguinis SK353]
Length = 397
Score = 333 bits (853), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 181/390 (46%), Positives = 251/390 (64%), Gaps = 13/390 (3%)
Query: 194 NEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVE 253
+E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ L V+YVSGEES E
Sbjct: 19 DEFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVST------QLSHQGTVLYVSGEESAE 72
Query: 254 QIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLM 313
QI RA+R+ E +LY+ T++++I +++ + P LIIDSIQTV ++ G +
Sbjct: 73 QIKLRAERLGDIDSEFYLYAETNMQNIRTEIEKIKPDFLIIDSIQTVMSPEISSVQGSVS 132
Query: 314 QVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLR 373
QV+E T+ L++ AK NI + GH+TK G +AGPR LEH+VD VLY EGE+ ++R+LR
Sbjct: 133 QVREVTAELMQLAKTNNIATFIVGHMTKEGTLAGPRTLEHMVDTVLYFEGERQHTFRILR 192
Query: 374 SVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLI 433
+VKNRFGST+E+G+FEM GL V NPS++FL E+ + G ++ V M+G+R L
Sbjct: 193 AVKNRFGSTNEIGIFEMQSGGLVEVVNPSEVFLEERLDGA---TGSSIVVTMEGTRPILA 249
Query: 434 EIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETA 491
E+QAL R G+ +RA +I++VL K+AGL LQ +L GV L E A
Sbjct: 250 EVQALVTPTMFGNAKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPA 309
Query: 492 GDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKS 551
DLAVA AI SS+ + P FIGEIGL GE+R V+R+E+R++ AKLG+ K VPK+
Sbjct: 310 IDLAVAVAIASSYKDLPTNPQECFIGEIGLTGEIRRVNRIEQRINEAAKLGFTKVYVPKN 369
Query: 552 AEKSLATLGFEQMEFIGCKNLKEVINVVFT 581
+ L + ++ IG + EV+ VF+
Sbjct: 370 SLNGLKVP--DNIQVIGVTTIGEVLKKVFS 397
>gi|313668739|ref|YP_004049023.1| DNA repair protein [Neisseria lactamica 020-06]
gi|313006201|emb|CBN87663.1| putative DNA repair protein [Neisseria lactamica 020-06]
Length = 464
Score = 332 bits (852), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 193/476 (40%), Positives = 278/476 (58%), Gaps = 32/476 (6%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKP--EEV 167
K +T + C+ CG T +W G C C T++ A + Q +W + +
Sbjct: 8 KTLKTLYQCTGCGGTSPKWQGKCPHCGEWNTLQESLAAPDPKNARFQ-SWAADTSTVQSL 66
Query: 168 QPVRLLEVNK---GMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLL 224
V EV + GM +LD RVLGGGLV G+++L+GGDPG+GKSTLL
Sbjct: 67 STVTATEVPRNPTGMGELD--------------RVLGGGLVDGAVILLGGDPGIGKSTLL 112
Query: 225 LQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKV 284
LQ A +A + V+YVSGEES +Q+ RA R+ + TE + L + +E I +
Sbjct: 113 LQTIAKMA------QSRKVLYVSGEESAQQVALRAQRLELPTEGVNLLAEIRMEAIQTAL 166
Query: 285 QPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGD 344
+ P ++IDSIQT+Y + + G + QV+EC + L R AK+ I ++L GHVTK G
Sbjct: 167 KQHRPEVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRMAKQMGIAMILVGHVTKDGA 226
Query: 345 IAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKI 404
IAGPRVLEH+VD VLY EG++ S+YR++R++KNRFG+ +ELGVF M++ GL+ VSNPS I
Sbjct: 227 IAGPRVLEHMVDTVLYFEGDQHSNYRMIRAIKNRFGAANELGVFAMTENGLKGVSNPSAI 286
Query: 405 FLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIIS 462
FL+ D+ G V V +GSR L+EIQAL G T R G++ +R M+++
Sbjct: 287 FLASYRDDT---PGSCVLVTQEGSRPLLVEIQALVDDAHGFTPKRLTVGLEQNRLAMLLA 343
Query: 463 VLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLG 522
VL + G+ + +FLN V GV + E A DLAV A+ SSF P+P GEIGL
Sbjct: 344 VLNRHGGIACFDQDVFLNAVGGVKIGEPAADLAVILAMLSSFRNRPMPEKTVVFGEIGLS 403
Query: 523 GELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINV 578
GE+R V+R ++R+ KLG+++ IVPK+ A F ++ G +L+E I++
Sbjct: 404 GEVRPVARGQERLKEAEKLGFKRAIVPKANMPRNAK-EFPNLKIYGVSSLQEAIDI 458
>gi|395240939|ref|ZP_10417961.1| DNA repair protein radA [Lactobacillus gigeriorum CRBIP 24.85]
gi|394475447|emb|CCI87938.1| DNA repair protein radA [Lactobacillus gigeriorum CRBIP 24.85]
Length = 458
Score = 332 bits (852), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 199/476 (41%), Positives = 281/476 (59%), Gaps = 37/476 (7%)
Query: 116 WVCSDCGYTDGQWWGMCRAC--------ESVGTMKRYSAGESDEGPVVQRTWLPQKPEEV 167
+ C CGY + G C C E+ T KR S + PV Q L Q
Sbjct: 8 YKCRSCGYISASYLGRCPNCGAWNQFEEETQETRKR-----SGKQPVSQ---LIQSTGIN 59
Query: 168 QPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQM 227
+PV+L EV K K+ S E+ RVLGGG+VPGSL+LIGGDPG+GKSTL+LQ+
Sbjct: 60 EPVKLGEV-KAKKEERITTDFS-----ELNRVLGGGIVPGSLILIGGDPGIGKSTLMLQV 113
Query: 228 AAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPL 287
+ +A+ + V+YVSGEES QI RADR+ I + LY TD+E I +++ +
Sbjct: 114 MSNLANKYK------VLYVSGEESASQIKLRADRLGIGDNNMLLYPETDMERIRDQIAEV 167
Query: 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAG 347
P L+IDSIQT+ + G QV+E TS L++ AK I V + GHVTK G IAG
Sbjct: 168 KPDFLVIDSIQTMNEPSLDSVTGSASQVREVTSELMKIAKLDAITVFVIGHVTKEGAIAG 227
Query: 348 PRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLS 407
P++LEH+VD VLY EG++ SYR+L SVKNRFG+ +E+G+FEM GL+ VSNPS IFL
Sbjct: 228 PKILEHMVDTVLYFEGDEHHSYRILHSVKNRFGAANEIGMFEMINEGLREVSNPSAIFLD 287
Query: 408 EQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLM 465
++ +S G AV V ++G+R L EIQAL + R +GI +RA ++++VL
Sbjct: 288 QRLPNS---TGSAVVVSLEGTRPLLAEIQALVTPTAFGYAKRTTSGIDYNRAALLLAVLE 344
Query: 466 KQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGEL 525
K+ L LQ ++L G+ L E A DLA+ A+ SS+ I + F+GE+GL GE+
Sbjct: 345 KRGNLMLQNQDVYLTATGGIKLNEPAIDLAIVMAVASSYTNKEISSTDCFVGEVGLTGEI 404
Query: 526 RMVSRMEKRVSTVAKLGYRKCIVPKSAEKS-LATLGFEQMEFIGCKNLKEVINVVF 580
R V+++E RV K+G+++ +PK +S LA LG +E I ++ + + +VF
Sbjct: 405 RRVNKIESRVKEAGKVGFKRIFIPKHNYQSDLANLG---IEVIPIASIPQALKLVF 457
>gi|307704432|ref|ZP_07641343.1| DNA repair protein RadA [Streptococcus mitis SK597]
gi|322378200|ref|ZP_08052684.1| DNA repair protein RadA [Streptococcus sp. M334]
gi|417846812|ref|ZP_12492796.1| DNA repair protein RadA [Streptococcus mitis SK1073]
gi|417848926|ref|ZP_12494858.1| DNA repair protein RadA [Streptococcus mitis SK1080]
gi|307622005|gb|EFO01031.1| DNA repair protein RadA [Streptococcus mitis SK597]
gi|321280830|gb|EFX57846.1| DNA repair protein RadA [Streptococcus sp. M334]
gi|339457674|gb|EGP70241.1| DNA repair protein RadA [Streptococcus mitis SK1080]
gi|339457932|gb|EGP70485.1| DNA repair protein RadA [Streptococcus mitis SK1073]
Length = 407
Score = 332 bits (852), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 183/420 (43%), Positives = 267/420 (63%), Gaps = 24/420 (5%)
Query: 163 KPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKST 222
KP ++ V + VN+ +++ E RVLGGG+VPGSLVLIGGDPG+GKST
Sbjct: 9 KPMKLAEVTSINVNRTKTEME-----------EFNRVLGGGVVPGSLVLIGGDPGIGKST 57
Query: 223 LLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVE 282
LLLQ++ ++ V V+YVSGEES +QI RA+R+ E +LY+ T+++ +
Sbjct: 58 LLLQVSTQLSQV------GTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSVRA 111
Query: 283 KVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKS 342
+V+ + P LIIDSIQT+ ++G G + QV+E T+ L++ AK NI + + GHVTK
Sbjct: 112 EVERIQPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELMQLAKTNNIAIFIVGHVTKE 171
Query: 343 GDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPS 402
G +AGPR+LEH+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS
Sbjct: 172 GTLAGPRMLEHMVDTVLYFEGERHHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPS 231
Query: 403 KIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMI 460
++FL E+ + G ++ V M+G+R L E+QAL R G+ +RA +I
Sbjct: 232 QVFLEERLDGA---TGSSIVVTMEGTRPILAEVQALVTPTMFGNAKRTTTGLDFNRASLI 288
Query: 461 ISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIG 520
++VL K+AGL LQ +L GV L E A DLAVA AI SS+ + P F+GE+G
Sbjct: 289 MAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKPTNPQECFVGELG 348
Query: 521 LGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
L GE+R V+R+E+R++ AKLG+ K VPK++ + ++++ IG ++EV+ VF
Sbjct: 349 LTGEIRRVNRIEQRINEAAKLGFTKIYVPKNSLTGITPP--KEIQVIGVTTIQEVLKKVF 406
>gi|422111387|ref|ZP_16380995.1| unnamed protein product [Neisseria lactamica Y92-1009]
gi|309378189|emb|CBX23181.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 459
Score = 332 bits (852), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 192/476 (40%), Positives = 280/476 (58%), Gaps = 32/476 (6%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKP--EEV 167
K +T + C++CG T +W G C C T++ A + Q +W + +
Sbjct: 3 KTLKTLYQCTECGGTSPKWQGKCPHCGEWNTLQESLAAPEPKNARFQ-SWAADTSSVQSL 61
Query: 168 QPVRLLEVNK---GMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLL 224
V EV + GM +LD RVLGGGLV G+++L+GGDPG+GKSTLL
Sbjct: 62 SAVTATEVPRNPTGMGELD--------------RVLGGGLVDGAVILLGGDPGIGKSTLL 107
Query: 225 LQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKV 284
LQ A +A + V+YVSGEES +Q+ RA R+ + T+ + L + +E I +
Sbjct: 108 LQTIAKMA------QSRKVLYVSGEESAQQVALRAQRLELPTDGVNLLAEIRMEAIQTAL 161
Query: 285 QPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGD 344
+ P ++IDSIQT+Y + + G + QV+EC + L R AK+ I ++L GHVTK G
Sbjct: 162 KQHQPEVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRMAKQMGIAMILVGHVTKDGA 221
Query: 345 IAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKI 404
IAGPRVLEH+VD VLY EG++ S+YR++R++KNRFG+ +ELGVF M++ GL+ VSNPS I
Sbjct: 222 IAGPRVLEHMVDTVLYFEGDQHSNYRMIRAIKNRFGAANELGVFAMTENGLKGVSNPSAI 281
Query: 405 FLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIIS 462
FL+ D+ G V V +GSR L+EIQAL G T R G++ +R M+++
Sbjct: 282 FLASYRDDT---PGSCVLVTQEGSRPLLVEIQALVDDAHGFTPKRLTVGLEQNRLAMLLA 338
Query: 463 VLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLG 522
VL + G+ + +FLN V GV + E A DLAV A+ SSF P+P GEIGL
Sbjct: 339 VLNRHGGIACFDQDVFLNAVGGVKIGEPAADLAVILAMLSSFRNRPMPEKTVVFGEIGLS 398
Query: 523 GELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINV 578
GE+R V+R ++R+ KLG+++ IVPK+ A F +++ G +L+E I++
Sbjct: 399 GEVRPVARGQERLKEAEKLGFKRAIVPKANMPRNAK-EFPKLKIHGVSSLQEAIDI 453
>gi|421560958|ref|ZP_16006811.1| DNA repair protein RadA [Neisseria meningitidis NM2657]
gi|254669886|emb|CBA04378.1| DNA repair protein [Neisseria meningitidis alpha153]
gi|402339438|gb|EJU74654.1| DNA repair protein RadA [Neisseria meningitidis NM2657]
Length = 459
Score = 332 bits (852), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 192/476 (40%), Positives = 279/476 (58%), Gaps = 32/476 (6%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKP--EEV 167
K +T + C++CG T +W G C C T++ A + Q +W + +
Sbjct: 3 KTLKTLYQCTECGGTSPKWQGKCPHCGEWNTLQESLAAPEPKNARFQ-SWAADTSTVQSL 61
Query: 168 QPVRLLEVNK---GMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLL 224
V EV + GM +LD RVLGGGLV G+++L+GGDPG+GKSTLL
Sbjct: 62 SSVTATEVPRNPTGMGELD--------------RVLGGGLVDGAVILLGGDPGIGKSTLL 107
Query: 225 LQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKV 284
LQ A +A + V+YVSGEES +Q+ RA R+ + T+ + L + +E I +
Sbjct: 108 LQTIAKMA------QSRKVLYVSGEESAQQVALRAQRLELPTDGVNLLAEIRMEAIQAAL 161
Query: 285 QPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGD 344
+ P ++IDSIQT+Y + + G + QV+EC + L R AK+ I ++L GHVTK G
Sbjct: 162 KQHQPEVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRMAKQMGIAMILVGHVTKDGA 221
Query: 345 IAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKI 404
IAGPRVLEH+VD VLY EG++ S+YR++R++KNRFG+ +ELGVF M++ GL+ VSNPS I
Sbjct: 222 IAGPRVLEHMVDTVLYFEGDQHSNYRMIRAIKNRFGAANELGVFAMTENGLKGVSNPSAI 281
Query: 405 FLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIIS 462
FL+ D+ G V V +GSR L+EIQAL G T R G++ +R M+++
Sbjct: 282 FLASYRDDT---PGSCVLVTQEGSRPLLVEIQALVDDAHGFTPKRLTVGLEQNRLAMLLA 338
Query: 463 VLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLG 522
VL + G+ + +FLN V GV + E A DLAV A+ SSF P+P GEIGL
Sbjct: 339 VLNRHGGIACFDQDVFLNAVGGVKIGEPAADLAVILAMLSSFRNRPMPEKTVVFGEIGLS 398
Query: 523 GELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINV 578
GE+R V+R ++R+ KLG+++ IVPK+ A F ++ G +L+E I++
Sbjct: 399 GEVRPVARGQERLKEAEKLGFKRAIVPKANMPRNAK-EFPNLKIYGVSSLQEAIDI 453
>gi|15676680|ref|NP_273824.1| DNA repair protein RadA [Neisseria meningitidis MC58]
gi|385853528|ref|YP_005900042.1| DNA repair protein RadA [Neisseria meningitidis H44/76]
gi|421544156|ref|ZP_15990234.1| DNA repair protein RadA [Neisseria meningitidis NM140]
gi|421546266|ref|ZP_15992315.1| DNA repair protein RadA [Neisseria meningitidis NM183]
gi|421548535|ref|ZP_15994560.1| DNA repair protein RadA [Neisseria meningitidis NM2781]
gi|421550335|ref|ZP_15996340.1| DNA repair protein RadA [Neisseria meningitidis 69166]
gi|421552560|ref|ZP_15998534.1| DNA repair protein RadA [Neisseria meningitidis NM576]
gi|421554545|ref|ZP_16000486.1| DNA repair protein RadA [Neisseria meningitidis 98008]
gi|421567228|ref|ZP_16012964.1| DNA repair protein RadA [Neisseria meningitidis NM3001]
gi|433464765|ref|ZP_20422250.1| DNA repair protein RadA [Neisseria meningitidis NM422]
gi|433471088|ref|ZP_20428479.1| DNA repair protein RadA [Neisseria meningitidis 68094]
gi|433477270|ref|ZP_20434593.1| DNA repair protein RadA [Neisseria meningitidis 70012]
gi|433488016|ref|ZP_20445184.1| DNA repair protein RadA [Neisseria meningitidis M13255]
gi|433490134|ref|ZP_20447263.1| DNA repair protein RadA [Neisseria meningitidis NM418]
gi|433504792|ref|ZP_20461732.1| DNA repair protein RadA [Neisseria meningitidis 9506]
gi|433506804|ref|ZP_20463716.1| DNA repair protein RadA [Neisseria meningitidis 9757]
gi|433508916|ref|ZP_20465789.1| DNA repair protein RadA [Neisseria meningitidis 12888]
gi|433511049|ref|ZP_20467881.1| DNA repair protein RadA [Neisseria meningitidis 4119]
gi|433521609|ref|ZP_20478304.1| DNA repair protein RadA [Neisseria meningitidis 61103]
gi|433525714|ref|ZP_20482348.1| DNA repair protein RadA [Neisseria meningitidis 69096]
gi|433536470|ref|ZP_20492978.1| DNA repair protein RadA [Neisseria meningitidis 77221]
gi|433538662|ref|ZP_20495142.1| DNA repair protein RadA [Neisseria meningitidis 70030]
gi|7226014|gb|AAF41195.1| DNA repair protein RadA [Neisseria meningitidis MC58]
gi|325200532|gb|ADY95987.1| DNA repair protein RadA [Neisseria meningitidis H44/76]
gi|402324001|gb|EJU59439.1| DNA repair protein RadA [Neisseria meningitidis NM183]
gi|402324268|gb|EJU59704.1| DNA repair protein RadA [Neisseria meningitidis NM140]
gi|402326196|gb|EJU61601.1| DNA repair protein RadA [Neisseria meningitidis NM2781]
gi|402330550|gb|EJU65897.1| DNA repair protein RadA [Neisseria meningitidis 69166]
gi|402331192|gb|EJU66533.1| DNA repair protein RadA [Neisseria meningitidis NM576]
gi|402332505|gb|EJU67830.1| DNA repair protein RadA [Neisseria meningitidis 98008]
gi|402344239|gb|EJU79380.1| DNA repair protein RadA [Neisseria meningitidis NM3001]
gi|432204252|gb|ELK60297.1| DNA repair protein RadA [Neisseria meningitidis NM422]
gi|432209577|gb|ELK65544.1| DNA repair protein RadA [Neisseria meningitidis 68094]
gi|432216492|gb|ELK72373.1| DNA repair protein RadA [Neisseria meningitidis 70012]
gi|432224482|gb|ELK80247.1| DNA repair protein RadA [Neisseria meningitidis M13255]
gi|432228042|gb|ELK83743.1| DNA repair protein RadA [Neisseria meningitidis NM418]
gi|432242307|gb|ELK97831.1| DNA repair protein RadA [Neisseria meningitidis 9506]
gi|432242593|gb|ELK98111.1| DNA repair protein RadA [Neisseria meningitidis 9757]
gi|432247730|gb|ELL03165.1| DNA repair protein RadA [Neisseria meningitidis 12888]
gi|432248540|gb|ELL03965.1| DNA repair protein RadA [Neisseria meningitidis 4119]
gi|432260382|gb|ELL15641.1| DNA repair protein RadA [Neisseria meningitidis 61103]
gi|432261905|gb|ELL17150.1| DNA repair protein RadA [Neisseria meningitidis 69096]
gi|432274420|gb|ELL29508.1| DNA repair protein RadA [Neisseria meningitidis 77221]
gi|432274670|gb|ELL29757.1| DNA repair protein RadA [Neisseria meningitidis 70030]
Length = 459
Score = 332 bits (852), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 192/476 (40%), Positives = 279/476 (58%), Gaps = 32/476 (6%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKP--EEV 167
K +T + C++CG T +W G C C T++ A + Q +W + +
Sbjct: 3 KTLKTLYQCTECGGTSPKWQGKCPHCGEWNTLQESLAAPEPKNARFQ-SWAADTSTVQSL 61
Query: 168 QPVRLLEVNK---GMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLL 224
V EV + GM +LD RVLGGGLV G+++L+GGDPG+GKSTLL
Sbjct: 62 SAVTATEVPRNPTGMGELD--------------RVLGGGLVDGAVILLGGDPGIGKSTLL 107
Query: 225 LQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKV 284
LQ A +A + V+YVSGEES +Q+ RA R+ + T+ + L + +E I +
Sbjct: 108 LQTIAKMA------QSRKVLYVSGEESAQQVALRAQRLELPTDGVNLLAEIRMEAIQAAL 161
Query: 285 QPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGD 344
+ P ++IDSIQT+Y + + G + QV+EC + L R AK+ I ++L GHVTK G
Sbjct: 162 KQHQPEVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRMAKQMGIAMILVGHVTKDGA 221
Query: 345 IAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKI 404
IAGPRVLEH+VD VLY EG++ S+YR++R++KNRFG+ +ELGVF M++ GL+ VSNPS I
Sbjct: 222 IAGPRVLEHMVDTVLYFEGDQHSNYRMIRAIKNRFGAANELGVFAMTENGLKGVSNPSAI 281
Query: 405 FLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIIS 462
FL+ D+ G V V +GSR L+EIQAL G T R G++ +R M+++
Sbjct: 282 FLASYRDDT---PGSCVLVTQEGSRPLLVEIQALVDDAHGFTPKRLTVGLEQNRLAMLLA 338
Query: 463 VLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLG 522
VL + G+ + +FLN V GV + E A DLAV A+ SSF P+P GEIGL
Sbjct: 339 VLNRHGGIACFDQDVFLNAVGGVKIGEPAADLAVILAMLSSFRNRPMPEKTVVFGEIGLS 398
Query: 523 GELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINV 578
GE+R V+R ++R+ KLG+++ IVPK+ A F ++ G +L+E I++
Sbjct: 399 GEVRPVARGQERLKEAEKLGFKRAIVPKANMPRNAK-EFPNLKIYGVSSLQEAIDI 453
>gi|326391128|ref|ZP_08212674.1| DNA repair protein RadA [Thermoanaerobacter ethanolicus JW 200]
gi|345018565|ref|YP_004820918.1| DNA repair protein RadA [Thermoanaerobacter wiegelii Rt8.B1]
gi|325992827|gb|EGD51273.1| DNA repair protein RadA [Thermoanaerobacter ethanolicus JW 200]
gi|344033908|gb|AEM79634.1| DNA repair protein RadA [Thermoanaerobacter wiegelii Rt8.B1]
Length = 453
Score = 332 bits (852), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 184/476 (38%), Positives = 281/476 (59%), Gaps = 47/476 (9%)
Query: 114 TNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRLL 173
T +VC +CG+ +W G C C+S W + E ++ +
Sbjct: 6 TKFVCRECGFESSKWMGRCPNCDS---------------------WNSFEEETIEDSKNF 44
Query: 174 EVNKGMKQL----------DWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTL 223
NK Q+ + RI +G+ E RVLGGG+V GSLVLIGGDPG+GKSTL
Sbjct: 45 RKNKDRSQIFLLEDVTFSEEERIK-TGI--EEFDRVLGGGIVKGSLVLIGGDPGIGKSTL 101
Query: 224 LLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEK 283
LLQ+A I+D V+YVSGEES++QI RADR++ ++++L T+IE+I K
Sbjct: 102 LLQVAGNISD------NRKVLYVSGEESIQQIKLRADRILKEKQQIYLLCETNIEEIERK 155
Query: 284 VQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSG 343
+ P +IIDSIQT+Y G + QV++ T L+ AK+ +I + L GHVTK G
Sbjct: 156 IDENKPDFVIIDSIQTMYTEESETIPGSVSQVRQVTQRLMEIAKQKDISIFLIGHVTKEG 215
Query: 344 DIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSK 403
IAGP+VLEH+VD VLY EG++ S+R+LR+VKNRFG+T E+GVF+M + GL +SNPS+
Sbjct: 216 AIAGPKVLEHMVDTVLYFEGDRTQSFRILRAVKNRFGATHEIGVFDMEEDGLCEISNPSE 275
Query: 404 IFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQAL-CVSGSTVSRHV-NGIQASRADMII 461
LS + D ++G AV + G+R L+E+Q+L C + V R + G +R +++
Sbjct: 276 FILSNKPKD---VSGTAVVCSIQGTRPILMEVQSLICKTTFGVPRRMATGFDYNRFILLL 332
Query: 462 SVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGL 521
+V+ K+ G+ L + ++NV G+ + E A DL + A+ S + PIP + FIGE+GL
Sbjct: 333 AVIEKRLGINLSQFDAYVNVAGGMKIQEPAADLGIIASSLSGYFNIPIPEDVCFIGEVGL 392
Query: 522 GGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVIN 577
GE+R VS ++KR+ K+G+ + +P+ K + FE ++ I +++KE+++
Sbjct: 393 TGEVRGVSNIDKRIGEAQKMGFSQVFIPEMKTKEIKK--FENIKIIKVRDIKEIMD 446
>gi|114567872|ref|YP_755026.1| DNA repair protein RadA [Syntrophomonas wolfei subsp. wolfei str.
Goettingen]
gi|114338807|gb|ABI69655.1| DNA repair protein RadA [Syntrophomonas wolfei subsp. wolfei str.
Goettingen]
Length = 451
Score = 332 bits (852), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 199/469 (42%), Positives = 284/469 (60%), Gaps = 27/469 (5%)
Query: 114 TNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRLL 173
+ +VC +CGY +W G C C + ++ ES ++RT + V +
Sbjct: 6 SKFVCHECGYETPKWLGKCPGCSAWNSLLE----ESISNKPLRRT--------AERVAAI 53
Query: 174 EVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIAD 233
+N+ + R SGL +E RVLGGG+VPGSL+L+GGDPG+GKSTLLLQ+A +IA
Sbjct: 54 PLNQLSAEDSPRFS-SGL--SEFDRVLGGGIVPGSLILLGGDPGIGKSTLLLQVAGLIA- 109
Query: 234 VHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALI 293
++Y+SGEES++QI RA R+ I + +FL + DI+ + E + L P +I
Sbjct: 110 ----AAGKRILYLSGEESLQQIRLRASRLGINNDTIFLLNEQDIDLLHEYINDLDPDLII 165
Query: 294 IDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEH 353
IDSIQTVY ++ G + Q++E T+A+++ AKK + V L GHVTK G +AGP+VLEH
Sbjct: 166 IDSIQTVYSSKLSSIPGSVSQLRESTAAVMQIAKKMDKAVFLVGHVTKDGSLAGPKVLEH 225
Query: 354 IVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDS 413
IVD V+Y EGEK S+RLLR+ KNRFG+TDE+ + EMS GL V +PS +FLS S
Sbjct: 226 IVDVVVYFEGEKNFSFRLLRAAKNRFGATDEIALLEMSGQGLVEVPDPSYVFLSPGRDIS 285
Query: 414 EFLAGLAVAVIMDGSRSFLIEIQALCVS--GSTVSRHVNGIQASRADMIISVLMKQAGLK 471
+G A+ M+GSR LIEIQAL S R V+GI +R +II+VL K+ G
Sbjct: 286 ---SGTAIVASMEGSRPLLIEIQALVSSLGAGYPRRMVSGIDQNRLSLIIAVLEKRRGYT 342
Query: 472 LQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRM 531
L ++L V GV L + + DL +AAA+ SS+LE P+ FIGEI L G++R VS +
Sbjct: 343 LSACDVYLKVSGGVFLKDPSVDLGIAAAVLSSYLEKPLAMDTVFIGEISLSGQIRPVSFL 402
Query: 532 EKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+ R+ + ++GY++ IVP S + LA ME + K+L I++V
Sbjct: 403 DLRLREIDRMGYKRVIVPTSPGR-LAK-SSHNMEILEVKSLDHFIDIVL 449
>gi|422847660|ref|ZP_16894343.1| DNA repair protein RadA [Streptococcus sanguinis SK72]
gi|325686658|gb|EGD28684.1| DNA repair protein RadA [Streptococcus sanguinis SK72]
Length = 397
Score = 332 bits (852), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 181/390 (46%), Positives = 250/390 (64%), Gaps = 13/390 (3%)
Query: 194 NEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVE 253
+E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ L V+YVSGEES E
Sbjct: 19 DEFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVST------QLSHQGTVLYVSGEESAE 72
Query: 254 QIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLM 313
QI RA+R+ E +LY+ T++++I +++ + P LIIDSIQTV ++ G +
Sbjct: 73 QIKLRAERLGDIDSEFYLYAETNMQNIRTEIEKIKPDFLIIDSIQTVMSPEISSVQGSVS 132
Query: 314 QVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLR 373
QV+E T+ L++ AK NI + GH+TK G +AGPR LEH+VD VLY EGE+ ++R+LR
Sbjct: 133 QVREVTAELMQLAKTNNIATFIVGHMTKEGTLAGPRTLEHMVDTVLYFEGERQHTFRILR 192
Query: 374 SVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLI 433
+VKNRFGST+E+G+FEM GL V NPS++FL E+ + G ++ V M+G+R L
Sbjct: 193 AVKNRFGSTNEIGIFEMQSGGLVEVVNPSEVFLEERLDGA---TGSSIVVTMEGTRPILA 249
Query: 434 EIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETA 491
E+QAL R G+ +RA +I++VL K+AGL LQ +L GV L E A
Sbjct: 250 EVQALVTPTMFGNAKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPA 309
Query: 492 GDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKS 551
DLAVA AI SS+ + P FIGEIGL GE+R V+R+E+R++ AKLG+ K PK+
Sbjct: 310 IDLAVAVAIASSYKDLPTNPQECFIGEIGLTGEIRRVNRIEQRINEAAKLGFTKVYAPKN 369
Query: 552 AEKSLATLGFEQMEFIGCKNLKEVINVVFT 581
A L + ++ IG + EV+ VF+
Sbjct: 370 ALNGLKVP--DNIQVIGVTTIGEVLKKVFS 397
>gi|322388500|ref|ZP_08062102.1| DNA repair protein RadA [Streptococcus infantis ATCC 700779]
gi|321140618|gb|EFX36121.1| DNA repair protein RadA [Streptococcus infantis ATCC 700779]
Length = 420
Score = 332 bits (852), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 183/421 (43%), Positives = 268/421 (63%), Gaps = 24/421 (5%)
Query: 163 KPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKST 222
KP ++ V + VN+ +++ E RVLGGG+VPGSLVLIGGDPG+GKST
Sbjct: 22 KPMKLAEVTSINVNRTKTEME-----------EFNRVLGGGVVPGSLVLIGGDPGIGKST 70
Query: 223 LLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVE 282
LLLQ++ ++ V V+YVSGEES +QI RA+R+ E +LY+ T+++ +
Sbjct: 71 LLLQVSTQLSQV------GTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSVRA 124
Query: 283 KVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKS 342
+V+ + P LIIDSIQT+ ++G G + QV+E T+ L++ AK NI + + GHVTK
Sbjct: 125 EVERIQPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELMQLAKTNNIAIFIVGHVTKE 184
Query: 343 GDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPS 402
G +AGPR+LEH+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS
Sbjct: 185 GTLAGPRMLEHMVDTVLYFEGERHHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPS 244
Query: 403 KIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMI 460
++FL E+ + G ++ V M+G+R L E+QAL R G+ +RA +I
Sbjct: 245 EVFLEERLDGA---TGSSIVVTMEGTRPILAEVQALVTPTMFGNAKRTTTGLDFNRASLI 301
Query: 461 ISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIG 520
++VL K+AGL LQ +L GV L E A DLAVA AI SS+ + P F+GE+G
Sbjct: 302 MAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKPTNPQECFVGELG 361
Query: 521 LGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
L GE+R V+R+E+R++ AKLG+ K VPK++ + ++++ IG ++EV+ VF
Sbjct: 362 LTGEIRRVNRIEQRINEAAKLGFTKIYVPKNSLTGIKPP--KEIQVIGVTTIQEVLKKVF 419
Query: 581 T 581
+
Sbjct: 420 S 420
>gi|395237674|ref|ZP_10415714.1| DNA repair protein RadA [Turicella otitidis ATCC 51513]
gi|394487023|emb|CCI83802.1| DNA repair protein RadA [Turicella otitidis ATCC 51513]
Length = 482
Score = 332 bits (852), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 194/489 (39%), Positives = 277/489 (56%), Gaps = 52/489 (10%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTM------------------KRYSAGESDE 151
K RT +VCS+CGY+ G+W G C C S GT+ R +AG +
Sbjct: 22 KKARTLYVCSECGYSSGKWLGRCPECGSWGTLAAQASAPAGAGEGGGRGAHRSTAGVAPA 81
Query: 152 GPVVQRTWLPQKP-EEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLV 210
P KP ++ V G+ +LD RVLG G+VPGS+V
Sbjct: 82 SPA--------KPISSLRAADAAAVTTGIGELD--------------RVLGRGIVPGSVV 119
Query: 211 LIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPV-VYVSGEESVEQIGNRADRMMIATEEL 269
L+ G+PGVGKSTLLL++AA A G+ + V +YV+ EES Q+ RA+R + L
Sbjct: 120 LLAGEPGVGKSTLLLEVAARWARQRGSGDGNRVALYVTAEESAGQVRLRAERTGAVLDTL 179
Query: 270 FLYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKT 329
+L + +D++ ++ V+ +SP LI+DS+QTV GV G AGG+ Q + T+AL AK
Sbjct: 180 YLAAESDLDTLIGHVEAVSPSLLIVDSVQTVQAAGVEGVAGGVAQSRAVTAALTSLAKSR 239
Query: 330 NIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFE 389
+PVLL GHVTK G++AGPR LEH+VD VL EG++ SS R+LR +KNRFG+TDE+G FE
Sbjct: 240 GLPVLLVGHVTKDGNVAGPRTLEHLVDVVLNFEGDRHSSLRMLRGLKNRFGATDEVGCFE 299
Query: 390 MSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCV--SGSTVSR 447
+ G+ V +PS +FLS + + G AV V MDG R L E+Q+L V S R
Sbjct: 300 QTADGIAEVPDPSGLFLSHRDDTPD---GAAVTVAMDGVRPLLAEVQSLAVQTSAKNPRR 356
Query: 448 HVNGIQASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEF 507
V G+ R M+++VL +AGL + +++ V G+ + E A DLAVA A S+
Sbjct: 357 VVTGLDPQRVPMVLAVLAARAGLSTADREVYVATVGGMRIREPATDLAVAMATVSTLKNK 416
Query: 508 PIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFI 567
P+P ++GE+GL GELR VS +++R+ A+LGYR+ +VP + +G I
Sbjct: 417 PLPPRTVYVGEVGLAGELRRVSSLKRRLQEAARLGYRRAVVPAGDAPKVEGIG-----VI 471
Query: 568 GCKNLKEVI 576
+ LK+ I
Sbjct: 472 PAETLKDAI 480
>gi|228475270|ref|ZP_04059995.1| DNA repair protein RadA [Staphylococcus hominis SK119]
gi|228270735|gb|EEK12144.1| DNA repair protein RadA [Staphylococcus hominis SK119]
Length = 457
Score = 332 bits (852), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 186/471 (39%), Positives = 285/471 (60%), Gaps = 34/471 (7%)
Query: 118 CSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQ---KPEEVQPVRLLE 174
C CGY +W G C C + M+ ++++T P+ K +E Q ++ +
Sbjct: 10 CMACGYQSPKWMGKCPNCGAWNQMEE----------IIEKTSNPKHGVKTKETQ-AKVQK 58
Query: 175 VNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADV 234
+N + R+ E RVLGGG+V GSLVLIGGDPG+GKSTLLLQ+ A
Sbjct: 59 LNSIKHETTPRVQTDS---KEFNRVLGGGIVSGSLVLIGGDPGIGKSTLLLQICA----- 110
Query: 235 HDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALII 294
L + V+Y++GEES+ Q RADR+ + L + + TD+E I + V+ P L++
Sbjct: 111 -SLSQKLNVLYITGEESLNQTKLRADRLEEDSSNLNVLAETDLEVIHQTVEQERPDILVV 169
Query: 295 DSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHI 354
DSIQT+Y ++ + G + QV+E T +L+ AK+ NI + GHVTK G IAGPR+LEH+
Sbjct: 170 DSIQTIYHPEISSAPGSVSQVRESTQSLMNIAKQMNIATFIVGHVTKEGQIAGPRLLEHM 229
Query: 355 VDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSE 414
VD VLY EG++ +YR+LR+VKNRFGST+E+G+FEM Q GL+ V NPS++FL E+ ++
Sbjct: 230 VDTVLYFEGDEHHAYRILRAVKNRFGSTNEMGIFEMKQSGLKGVQNPSEMFLEERSTN-- 287
Query: 415 FLAGLAVAVIMDGSRSFLIEIQALCVSGSTVS---RHVNGIQASRADMIISVLMKQAGLK 471
+ G + M+G+R LIE+Q+L V+ +T + R GI +R ++++VL K+
Sbjct: 288 -VPGSTIVATMEGTRPLLIEVQSL-VTPTTFNNPRRMATGIDHNRLSLLMAVLEKKENYL 345
Query: 472 LQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRM 531
LQ+ ++ V GV LTE A DL++ A SSF + + +IGE+GL GE+R VSR+
Sbjct: 346 LQQQDAYIKVAGGVRLTEPAVDLSIIVATASSFKDKAVDGLDCYIGEVGLTGEVRRVSRI 405
Query: 532 EKRVSTVAKLGYRKCIVPKSAEKSLATLGF-EQMEFIGCKNLKEVINVVFT 581
E+RV AKLG+++ I+PK+ ++ F E ++ +G + + + F+
Sbjct: 406 EQRVQEAAKLGFKRVIIPKT---NIGGWTFPEDVQVVGVTTVHDALKYAFS 453
>gi|424843391|ref|ZP_18268016.1| DNA repair protein RadA [Saprospira grandis DSM 2844]
gi|395321589|gb|EJF54510.1| DNA repair protein RadA [Saprospira grandis DSM 2844]
Length = 464
Score = 332 bits (852), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 181/474 (38%), Positives = 281/474 (59%), Gaps = 21/474 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKR----YSAGESDEGPVVQRTWLPQKPEEVQ 168
+ +VC++CG +W G C AC +++ + + + Q W ++ + +
Sbjct: 5 QKTFVCTECGNVSLKWEGRCSACGEWNSLQEEVTVKGSAKQEAKKATQGAWTQKRGRKQE 64
Query: 169 PVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMA 228
R + K R P E+ RVLGGG+V GS+VLIGG+PGVGKSTL+LQ+A
Sbjct: 65 HARPTHITKVQGDGTVRRPTDD---EELNRVLGGGIVSGSIVLIGGEPGVGKSTLMLQLA 121
Query: 229 AIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLS 288
L V+YVSGEES +QI RA+R+ + + FL + T++ +++ + L
Sbjct: 122 --------LSFSGKVLYVSGEESEQQIKMRAERLGLRDNDCFLMAETNLTNLLMQAATLG 173
Query: 289 PRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGP 348
P L++DSIQT+ + V G + QV+EC S L RFAK+TNIPV + GH+ K G IAGP
Sbjct: 174 PDVLVVDSIQTLSSQYVESPPGSVSQVRECASELQRFAKETNIPVFVIGHINKDGAIAGP 233
Query: 349 RVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSE 408
++LEHIVD VL EG++ ++R+LR++KNRFGST ELG++EM GL+ VSNPS++ L++
Sbjct: 234 KLLEHIVDVVLQFEGDRNYTHRILRTIKNRFGSTAELGIYEMQGRGLREVSNPSELLLTQ 293
Query: 409 QHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMK 466
+ D L+G A+ ++G R LIEIQAL + S+ R G R M+++VL K
Sbjct: 294 KEED---LSGSAITATVEGIRPMLIEIQALVSTSVFSSPQRSATGFDLRRLSMLLAVLEK 350
Query: 467 QAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELR 526
+ G + N +FLNV G+ +++ A D+AV AA+ SS + +P+ + F GEIGL GE+R
Sbjct: 351 RCGFQFGNNDVFLNVAGGLKVSDPAIDMAVVAALLSSLEDVAMPSNVCFAGEIGLSGEIR 410
Query: 527 MVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
V R+++R+ +LG+ K V K K + ++ +E + ++++ +F
Sbjct: 411 SVQRIDQRIQEANRLGFEKIYVSKFNTKGIDPANYD-IEIVPLSKVEQLFEDLF 463
>gi|153813965|ref|ZP_01966633.1| hypothetical protein RUMTOR_00172 [Ruminococcus torques ATCC 27756]
gi|317501493|ref|ZP_07959691.1| DNA repair protein radA [Lachnospiraceae bacterium 8_1_57FAA]
gi|331088035|ref|ZP_08336956.1| DNA repair protein RadA [Lachnospiraceae bacterium 3_1_46FAA]
gi|336439723|ref|ZP_08619329.1| DNA repair protein RadA [Lachnospiraceae bacterium 1_1_57FAA]
gi|145848361|gb|EDK25279.1| DNA repair protein RadA [Ruminococcus torques ATCC 27756]
gi|316897122|gb|EFV19195.1| DNA repair protein radA [Lachnospiraceae bacterium 8_1_57FAA]
gi|330408991|gb|EGG88450.1| DNA repair protein RadA [Lachnospiraceae bacterium 3_1_46FAA]
gi|336015315|gb|EGN45133.1| DNA repair protein RadA [Lachnospiraceae bacterium 1_1_57FAA]
Length = 458
Score = 332 bits (852), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 192/477 (40%), Positives = 284/477 (59%), Gaps = 28/477 (5%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGE-----SDEGPVVQRTWLPQKP 164
K ++ + C +CG+ + +W G C C T G S +G R
Sbjct: 3 KGKKSVFFCQNCGHEEAKWLGQCPGCGEWNTFVEEKIGSGVTKGSTQGAKAVR------- 55
Query: 165 EEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLL 224
E V+ +++ +N + D R +G+ E+ RVLGGG+VPGSLVL+GGDPG+GKSTLL
Sbjct: 56 ELVREAKVIPLNDVTAEDDVRCA-TGI--KELDRVLGGGIVPGSLVLVGGDPGIGKSTLL 112
Query: 225 LQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKV 284
LQ+ I+AD V+Y+SGEES QI RA+RM + LFL T++E I +
Sbjct: 113 LQVCRILAD------KKKVLYISGEESQTQIKLRANRMGNFADGLFLLCETNLEIIRGIL 166
Query: 285 QPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGD 344
+ P ++IDSIQT+Y V+ + G + QV+E T+ ++ AK IP+ + GHVTK G
Sbjct: 167 EKERPELVVIDSIQTMYSEEVSSAPGSVSQVRESTNVFMQLAKGLCIPIFIVGHVTKEGT 226
Query: 345 IAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKI 404
+AGPRVLEH+VD VLY EG++ +SYR+LR+VKNRFGST+E+GVFEM Q GL+ V NPS+
Sbjct: 227 VAGPRVLEHMVDTVLYFEGDRHASYRILRAVKNRFGSTNEIGVFEMRQSGLEEVENPSEY 286
Query: 405 FLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQAL-CVSGSTVSRHV-NGIQASRADMIIS 462
LS + S AG VA M+G+R LIEIQAL C S + R G +R +++++
Sbjct: 287 MLSGRPEQS---AGSVVACSMEGTRPILIEIQALVCRSNFGMPRRTAAGTDYNRVNLLMA 343
Query: 463 VLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLG 522
VL K+ G+ L + ++N+ G+ + E A DL + A+ SS+ P+ GE+GL
Sbjct: 344 VLEKRLGMALSNSDAYVNIAGGIRMNEPAIDLGIVMALVSSYRNRPVDEKTIVFGEVGLS 403
Query: 523 GELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVV 579
GE+R V+ E+RV+ KLG+ CI+P+ K + + + + IG K++ E + ++
Sbjct: 404 GEVRAVNMPEQRVAEAKKLGFETCILPQVCMKMVKDI--KGIRLIGVKSVNEAVGMI 458
>gi|86605055|ref|YP_473818.1| DNA repair protein RadA [Synechococcus sp. JA-3-3Ab]
gi|86553597|gb|ABC98555.1| DNA repair protein RadA [Synechococcus sp. JA-3-3Ab]
Length = 472
Score = 332 bits (852), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 190/450 (42%), Positives = 275/450 (61%), Gaps = 24/450 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPE-EVQPVR 171
+T W CS CG ++ G C C + T+ S + QR +PQ+ P+
Sbjct: 5 KTVWECSQCGERYPKFLGRCDNCGAWNTLTEVVVAPSSKSGPPQR-LVPQRSRGNGMPLS 63
Query: 172 LLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAII 231
L +++ + R+ SG E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ AA
Sbjct: 64 ALPLSQVSSESHPRLS-SG--SGEFDRVLGGGIVPGSLVLIGGDPGIGKSTLLLQTAA-- 118
Query: 232 ADVHDLGEPSPVVYVSGEESVEQIGNRADRMM--------IATEELFLYSSTDIEDIVEK 283
L + P++YVSGEES +QI RA R+ I +E+L+L + TD+E IV +
Sbjct: 119 ----HLAKRGPILYVSGEESAQQIKLRAARISGTESLRLGIESEQLYLLAETDLEAIVAE 174
Query: 284 VQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSG 343
+Q L P+ IIDSIQ ++ ++ + G + QV+EC L+R AKK + +L+ GHVTK G
Sbjct: 175 IQALQPQVAIIDSIQAIFWGQLSSAPGSVSQVRECAGLLMRVAKKLGVALLIVGHVTKDG 234
Query: 344 DIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSK 403
+AGP+VLEH+VD VLY EG++F S+RLLR+VKNRFG+ E+GVFEM+ GL V NPS+
Sbjct: 235 SLAGPKVLEHLVDTVLYFEGDRFQSHRLLRAVKNRFGAAQEIGVFEMTASGLVEVDNPSQ 294
Query: 404 IFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMII 461
+FLS S + G A V +G+R ++++QAL S S+ R GI+ +R I+
Sbjct: 295 LFLS---SRDQATPGTATIVACEGTRPLVVDVQALVSPTSYSSPRRTATGIELNRFLQIL 351
Query: 462 SVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGL 521
+VL K+ G+ L + ++ G+ + E A DL VA A+ +SF + + IGE+GL
Sbjct: 352 AVLEKRVGIPLSKYDAYIASAGGIQVAEPAADLGVAVAVAASFRDRQVDPFTVLIGEVGL 411
Query: 522 GGELRMVSRMEKRVSTVAKLGYRKCIVPKS 551
GG++R V+++E+R+ AKLG+R I+P S
Sbjct: 412 GGQVRPVAQLEQRLKEAAKLGFRHAIIPNS 441
>gi|408370992|ref|ZP_11168764.1| DNA repair protein RadA [Galbibacter sp. ck-I2-15]
gi|407743549|gb|EKF55124.1| DNA repair protein RadA [Galbibacter sp. ck-I2-15]
Length = 454
Score = 332 bits (852), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 178/446 (39%), Positives = 273/446 (61%), Gaps = 20/446 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T + C +CG +W G C +C+ T+ + D + W P + +
Sbjct: 5 KTTFYCQNCGAQSAKWQGQCSSCKQWNTLVEEIIQKEDN----KSGWKPTDSSSKRLAKP 60
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
L V++ + R+ +E+ RVLGGG+VPGS+ L+GG+PG+GKSTLLLQ+A
Sbjct: 61 LLVHEIDGSQEMRMATGS---SELDRVLGGGVVPGSVTLLGGEPGIGKSTLLLQIA---- 113
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
L P +YVSGEES +QI RA R+ +E F+ + T ++I +++ + P L
Sbjct: 114 ----LKLPFKTLYVSGEESQKQIKMRAQRIHPESENCFILTETKTQNIFRQIEGMDPDIL 169
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQT+ + SAG + Q++ECTS L++FAK++N PV+L GH+TK G IAGP++LE
Sbjct: 170 IIDSIQTLQTDFIESSAGSISQIRECTSELIKFAKQSNTPVILIGHITKDGHIAGPKILE 229
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VL EG++ YR++R++KNRFGST ELG++EM GL+ V+NPS++ +S+ +D
Sbjct: 230 HMVDTVLQFEGDRNHVYRIVRALKNRFGSTSELGIYEMLGSGLREVTNPSELLISK--TD 287
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
E L+G A++ ++G R ++EIQAL + T R G A R +M+++VL K+AG
Sbjct: 288 QE-LSGTAISATLEGMRPLMVEIQALVSTAVYGTPQRSTTGFNAKRLNMLLAVLEKRAGF 346
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
+L +FLN+ G+++ + A DLAV AAI SS + + F E+GL GE+R V R
Sbjct: 347 RLGAKDVFLNITGGISIDDPALDLAVIAAILSSNEDIALEKDNCFAAEVGLAGEIRPVQR 406
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSL 556
+E R+ KLG+ + V K ++ +L
Sbjct: 407 VEARIIEAEKLGFTRIFVSKQSKITL 432
>gi|358052015|ref|ZP_09146006.1| DNA repair protein RadA [Staphylococcus simiae CCM 7213]
gi|357258495|gb|EHJ08561.1| DNA repair protein RadA [Staphylococcus simiae CCM 7213]
Length = 454
Score = 332 bits (852), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 185/441 (41%), Positives = 270/441 (61%), Gaps = 32/441 (7%)
Query: 118 CSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRLLEVNK 177
C CGY +W G C C M+ +V++ P+ V+ EV
Sbjct: 10 CMACGYQSPKWMGKCPNCGGWNQMEE----------IVEKASSPK-----HGVKTKEVAS 54
Query: 178 GMKQLD----WRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIAD 233
+++L+ P E RVLGGG+V GSLVLIGGDPG+GKSTLLLQ+ A
Sbjct: 55 KVQKLNSIHHESTPRILTESAEFNRVLGGGIVNGSLVLIGGDPGIGKSTLLLQICA---- 110
Query: 234 VHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALI 293
L + V+Y++GEES+ Q RADR+ + EL + + TD+E I + V+ P L+
Sbjct: 111 --SLSQKKKVLYITGEESLNQTKLRADRLDEDSSELQVLAETDLEVIYQTVKEEQPDLLV 168
Query: 294 IDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEH 353
+DSIQT+Y ++ + G + QV+E T +L+ AK+ NI + GHVTK G IAGPR+LEH
Sbjct: 169 VDSIQTIYHPEISSAPGSVSQVRESTQSLMNIAKQMNIATFIVGHVTKEGQIAGPRLLEH 228
Query: 354 IVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDS 413
+VD VLY EG++ +YR+LR+VKNRFGST+E+G+FEM Q GL+ V+NPS++FL E+ ++
Sbjct: 229 MVDTVLYFEGDEHHAYRILRAVKNRFGSTNEMGIFEMKQSGLKGVNNPSEMFLEERSAN- 287
Query: 414 EFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVS---RHVNGIQASRADMIISVLMKQAGL 470
+ G + M+G+R LIE+QAL V+ +T + R GI +R ++++VL K+
Sbjct: 288 --VPGSTIVATMEGTRPLLIEVQAL-VTPTTFNNPRRMATGIDHNRLSLLMAVLEKKENY 344
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ+ ++ V GV LTE A DL+V A SSF + + +IGE+GL GE+R VSR
Sbjct: 345 LLQQQDAYIKVAGGVKLTEPAVDLSVIVATASSFKDKAVDGLDCYIGEVGLTGEVRRVSR 404
Query: 531 MEKRVSTVAKLGYRKCIVPKS 551
+E+RV AKLG+++ I+PK+
Sbjct: 405 IEQRVQEAAKLGFKRVIIPKN 425
>gi|408490814|ref|YP_006867183.1| DNA repair protein Sms (RadA) [Psychroflexus torquis ATCC 700755]
gi|408468089|gb|AFU68433.1| DNA repair protein Sms (RadA) [Psychroflexus torquis ATCC 700755]
Length = 464
Score = 332 bits (851), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 192/474 (40%), Positives = 286/474 (60%), Gaps = 31/474 (6%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLP---QKPEEV-Q 168
+T ++C +CG +W G C AC+ T+ + E +TW P P+++ +
Sbjct: 16 KTTYLCQNCGAQYARWQGQCNACKEWNTLVEEVIEKKPE-----KTWKPFTSSTPKKISK 70
Query: 169 PVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMA 228
P R+ ++ G + RIP S E RVLGGG+VPGS+ L+GG+PGVGKSTLLLQ++
Sbjct: 71 PQRINDIKIGK---EIRIPTSN---QEFNRVLGGGIVPGSITLLGGEPGVGKSTLLLQLS 124
Query: 229 AIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLS 288
V+YVSGEES +QI RA+R+ F+ S T + I +++ L
Sbjct: 125 LSFKQ--------KVLYVSGEESQQQIKMRAERINKQESNCFILSETKTQHIFSQIEALE 176
Query: 289 PRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGP 348
P LIIDSIQT++ S G + Q++ECT+ L+++AK+TN+PV+L GH+ K G IAGP
Sbjct: 177 PEILIIDSIQTLHTDYAESSPGTVSQIRECTAELIKYAKETNVPVILIGHINKEGSIAGP 236
Query: 349 RVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSE 408
+VLEH+VD VL EG+K +YR+LR+ KNRFGST ELG++EM GL VSNPS + +S+
Sbjct: 237 KVLEHMVDTVLQFEGDKNYAYRILRAHKNRFGSTHELGIYEMQAGGLVEVSNPSDLLISK 296
Query: 409 QHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMK 466
+ L+G A+A ++G R +IEIQAL S T R G R +MI++VL K
Sbjct: 297 TET---HLSGTAIAATLEGMRPMMIEIQALVSSAVYGTPQRSATGYNLKRLNMILAVLEK 353
Query: 467 QAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELR 526
+AG +L +FLN+ G+++ + A DLAV AAI SS + I I F E+GL GE+R
Sbjct: 354 RAGFRLGAKDVFLNITGGISIDDPAIDLAVVAAILSSNEDISISKDICFAAEVGLAGEIR 413
Query: 527 MVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
V+R+E+RV KLG+ ++ K ++ L + ++ + +++V++V+F
Sbjct: 414 PVTRVEQRVIEAEKLGFASILIAKQSK--LPKTDY-KINILRVAKIEDVVDVLF 464
>gi|417924243|ref|ZP_12567691.1| DNA repair protein RadA [Streptococcus mitis SK569]
gi|342836148|gb|EGU70368.1| DNA repair protein RadA [Streptococcus mitis SK569]
Length = 407
Score = 332 bits (851), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 183/420 (43%), Positives = 267/420 (63%), Gaps = 24/420 (5%)
Query: 163 KPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKST 222
KP ++ V + VN+ +++ E RVLGGG+VPGSLVLIGGDPG+GKST
Sbjct: 9 KPMKLAEVTSINVNRTKTEME-----------EFNRVLGGGVVPGSLVLIGGDPGIGKST 57
Query: 223 LLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVE 282
LLLQ++ ++ V V+YVSGEES +QI RA+R+ E +LY+ T+++ +
Sbjct: 58 LLLQVSTQLSQV------GTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSVRA 111
Query: 283 KVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKS 342
+V+ + P LIIDSIQT+ ++G G + QV+E T+ L++ AK NI + + GHVTK
Sbjct: 112 EVERIQPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELMQLAKTNNIAIFIVGHVTKE 171
Query: 343 GDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPS 402
G +AGPR+LEH+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS
Sbjct: 172 GTLAGPRMLEHMVDTVLYFEGERHHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPS 231
Query: 403 KIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMI 460
++FL E+ + G ++ V M+G+R L E+QAL R G+ +RA +I
Sbjct: 232 QVFLEERLDGA---TGSSIVVTMEGTRPILAEVQALVTPTMFGNAKRTTTGLDFNRASLI 288
Query: 461 ISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIG 520
++VL K+AGL LQ +L GV L E A DLAVA AI SS+ + P F+GE+G
Sbjct: 289 MAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKPTNPQECFVGELG 348
Query: 521 LGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
L GE+R V+R+E+R++ AKLG+ K VPK++ + ++++ IG ++EV+ VF
Sbjct: 349 LTGEIRRVNRIEQRINEAAKLGFTKIYVPKNSLTGITPP--KKIQVIGVTTIQEVLKKVF 406
>gi|149006815|ref|ZP_01830501.1| DNA repair protein RadA [Streptococcus pneumoniae SP18-BS74]
gi|169832478|ref|YP_001693546.1| DNA repair protein RadA [Streptococcus pneumoniae Hungary19A-6]
gi|221230979|ref|YP_002510131.1| DNA repair protein [Streptococcus pneumoniae ATCC 700669]
gi|225853651|ref|YP_002735163.1| DNA repair protein RadA [Streptococcus pneumoniae JJA]
gi|307126253|ref|YP_003878284.1| DNA repair protein RadA [Streptococcus pneumoniae 670-6B]
gi|415696472|ref|ZP_11456232.1| DNA repair protein RadA [Streptococcus pneumoniae 459-5]
gi|415748428|ref|ZP_11476480.1| DNA repair protein RadA [Streptococcus pneumoniae SV35]
gi|415753552|ref|ZP_11480453.1| DNA repair protein RadA [Streptococcus pneumoniae SV36]
gi|417675819|ref|ZP_12325232.1| DNA repair protein RadA [Streptococcus pneumoniae GA17545]
gi|418095118|ref|ZP_12732235.1| DNA repair protein RadA [Streptococcus pneumoniae GA16531]
gi|418122366|ref|ZP_12759301.1| DNA repair protein RadA [Streptococcus pneumoniae GA44378]
gi|418126954|ref|ZP_12763854.1| DNA repair protein RadA [Streptococcus pneumoniae NP170]
gi|418136128|ref|ZP_12772972.1| DNA repair protein RadA [Streptococcus pneumoniae GA11663]
gi|418154087|ref|ZP_12790818.1| DNA repair protein RadA [Streptococcus pneumoniae GA16242]
gi|418181660|ref|ZP_12818221.1| DNA repair protein RadA [Streptococcus pneumoniae GA43380]
gi|418224489|ref|ZP_12851120.1| DNA repair protein RadA [Streptococcus pneumoniae NP112]
gi|419472164|ref|ZP_14012017.1| DNA repair protein RadA [Streptococcus pneumoniae GA13430]
gi|421239611|ref|ZP_15696165.1| DNA repair protein RadA [Streptococcus pneumoniae 2080913]
gi|147761730|gb|EDK68694.1| DNA repair protein RadA [Streptococcus pneumoniae SP18-BS74]
gi|168994980|gb|ACA35592.1| DNA repair protein RadA [Streptococcus pneumoniae Hungary19A-6]
gi|220673439|emb|CAR67902.1| putative DNA repair protein [Streptococcus pneumoniae ATCC 700669]
gi|225722577|gb|ACO18430.1| DNA repair protein RadA [Streptococcus pneumoniae JJA]
gi|306483315|gb|ADM90184.1| DNA repair protein RadA [Streptococcus pneumoniae 670-6B]
gi|332076484|gb|EGI86946.1| DNA repair protein RadA [Streptococcus pneumoniae GA17545]
gi|353772778|gb|EHD53281.1| DNA repair protein RadA [Streptococcus pneumoniae GA16531]
gi|353797839|gb|EHD78169.1| DNA repair protein RadA [Streptococcus pneumoniae GA44378]
gi|353801417|gb|EHD81720.1| DNA repair protein RadA [Streptococcus pneumoniae NP170]
gi|353822379|gb|EHE02554.1| DNA repair protein RadA [Streptococcus pneumoniae GA16242]
gi|353849897|gb|EHE29901.1| DNA repair protein RadA [Streptococcus pneumoniae GA43380]
gi|353883686|gb|EHE63491.1| DNA repair protein RadA [Streptococcus pneumoniae NP112]
gi|353903186|gb|EHE78710.1| DNA repair protein RadA [Streptococcus pneumoniae GA11663]
gi|379553066|gb|EHZ18150.1| DNA repair protein RadA [Streptococcus pneumoniae GA13430]
gi|381307638|gb|EIC48488.1| DNA repair protein RadA [Streptococcus pneumoniae SV36]
gi|381318685|gb|EIC59402.1| DNA repair protein RadA [Streptococcus pneumoniae SV35]
gi|381320132|gb|EIC60808.1| DNA repair protein RadA [Streptococcus pneumoniae 459-5]
gi|395611394|gb|EJG71467.1| DNA repair protein RadA [Streptococcus pneumoniae 2080913]
Length = 420
Score = 332 bits (851), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 184/421 (43%), Positives = 268/421 (63%), Gaps = 26/421 (6%)
Query: 163 KPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKST 222
KP ++ V + VN+ +++ E RVLGGG+VPGSLVLIGGDPG+GKST
Sbjct: 22 KPMKLAEVTSINVNRTKTEME-----------EFNRVLGGGVVPGSLVLIGGDPGIGKST 70
Query: 223 LLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVE 282
LLLQ++ ++ V V+YVSGEES +QI RA+R+ E +LY+ T+++ +
Sbjct: 71 LLLQVSTQLSQV------GTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSVRA 124
Query: 283 KVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKS 342
+V+ + P LIIDSIQT+ ++G G + QV+E T+ L++ AK NI + + GHVTK
Sbjct: 125 EVERIQPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELMQLAKTNNIAIFIVGHVTKE 184
Query: 343 GDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPS 402
G +AGPR+LEH+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS
Sbjct: 185 GTLAGPRMLEHMVDTVLYFEGERHHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPS 244
Query: 403 KIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMI 460
++FL E+ + G ++ V M+G+R L E+QAL R G+ +RA +I
Sbjct: 245 QVFLEERLDGA---TGSSIVVTMEGTRPILAEVQALVTPTMFGNAKRTTTGLDFNRASLI 301
Query: 461 ISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIG 520
++VL K+AGL LQ +L GV L E A DLAVA AI SS+ + P F+GE+G
Sbjct: 302 MAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKPTNPQECFVGELG 361
Query: 521 LGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGF-EQMEFIGCKNLKEVINVV 579
L GE+R V+R+E+R++ AKLG+ K VP++ SL + ++++ IG ++EV+ V
Sbjct: 362 LTGEIRRVNRIEQRINEAAKLGFTKIYVPQN---SLTGITLPKEIQVIGVTTIQEVLKKV 418
Query: 580 F 580
F
Sbjct: 419 F 419
>gi|307710062|ref|ZP_07646506.1| DNA repair protein RadA [Streptococcus mitis SK564]
gi|307619042|gb|EFN98174.1| DNA repair protein RadA [Streptococcus mitis SK564]
Length = 407
Score = 332 bits (851), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 183/420 (43%), Positives = 267/420 (63%), Gaps = 24/420 (5%)
Query: 163 KPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKST 222
KP ++ V + VN+ +++ E RVLGGG+VPGSLVLIGGDPG+GKST
Sbjct: 9 KPMKLAEVTSINVNRTKTEME-----------EFNRVLGGGVVPGSLVLIGGDPGIGKST 57
Query: 223 LLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVE 282
LLLQ++ ++ V V+YVSGEES +QI RA+R+ E +LY+ T+++ +
Sbjct: 58 LLLQVSTQLSQV------GTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSVRA 111
Query: 283 KVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKS 342
+V+ + P LIIDSIQT+ ++G G + QV+E T+ L++ AK NI + + GHVTK
Sbjct: 112 EVERIQPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELMQLAKTNNIAIFIVGHVTKE 171
Query: 343 GDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPS 402
G +AGPR+LEH+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS
Sbjct: 172 GTLAGPRMLEHMVDTVLYFEGERHHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPS 231
Query: 403 KIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMI 460
++FL E+ + G ++ V M+G+R L E+QAL R G+ +RA +I
Sbjct: 232 QVFLEERLDGA---TGSSIVVTMEGTRPILAEVQALVTPTMFGNAKRTTTGLDFNRASLI 288
Query: 461 ISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIG 520
++VL K+AGL LQ +L GV L E A DLAVA AI SS+ + P F+GE+G
Sbjct: 289 MAVLGKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKPTNPQECFVGELG 348
Query: 521 LGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
L GE+R V+R+E+R++ AKLG+ K VPK++ + ++++ IG ++EV+ VF
Sbjct: 349 LTGEIRRVNRIEQRINEAAKLGFTKIYVPKNSLTGITPP--KEIQVIGVTTIQEVLKKVF 406
>gi|167752006|ref|ZP_02424133.1| hypothetical protein ALIPUT_00248 [Alistipes putredinis DSM 17216]
gi|167660247|gb|EDS04377.1| DNA repair protein RadA [Alistipes putredinis DSM 17216]
Length = 455
Score = 332 bits (851), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 185/436 (42%), Positives = 264/436 (60%), Gaps = 24/436 (5%)
Query: 116 WVCSDCGYTDGQWWGMCRACESVGTM-KRYSAGESDEGPVVQRTWLPQKPEEVQPVRLLE 174
+ C +CG+ +W G C +C T + A ES GP +P+ + + E
Sbjct: 8 FFCRNCGFEAPKWLGRCPSCGEWNTFTEEVIARESGGGPATVANLPKARPQRIADIHESE 67
Query: 175 VNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADV 234
+++D L EV RVLGGGLVPGSLVL+GG+PG+GKSTL LQ+A +AD
Sbjct: 68 ----HRRID-------LGNREVNRVLGGGLVPGSLVLLGGEPGIGKSTLSLQIA--LAD- 113
Query: 235 HDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALII 294
+YVSGEES EQI RA R+ I E +Y+ T +E+I+ +++ P ++I
Sbjct: 114 ----NGLKTLYVSGEESAEQIKMRALRLGIGNEGCLIYAETLLENILAQIEEQRPDLVVI 169
Query: 295 DSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHI 354
DSIQT+Y + SAG + Q++EC ++LL++AK T + + GH+TK G IAGP++LEHI
Sbjct: 170 DSIQTIYTDIIESSAGSVSQIRECAASLLKYAKATGTSIFIIGHITKDGTIAGPKILEHI 229
Query: 355 VDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSE 414
VD VL EG+ YR+LR +KNRFG+T E+GVFEM GL+ V NPS+I LS +
Sbjct: 230 VDVVLQFEGDNNLIYRILRGIKNRFGATFEIGVFEMLDAGLREVDNPSEILLSHYETP-- 287
Query: 415 FLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMKQAGLKL 472
L+G+AV +DG R +LIE+QAL + + T R G R +M+++VL K+ G+K+
Sbjct: 288 -LSGIAVGASVDGIRPYLIEVQALVSNAAYGTPQRTATGYDNKRMNMLLAVLEKRVGMKM 346
Query: 473 QENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRME 532
+FLN G + + DLAV AA+ SS+ + PI GI GEIGL GE+R R E
Sbjct: 347 FSKDVFLNFAGGFKVADPGLDLAVTAAVISSYYDRPIGEGICLAGEIGLSGEVRPAPRTE 406
Query: 533 KRVSTVAKLGYRKCIV 548
+R+S A+LG+R+ +V
Sbjct: 407 QRISEAARLGFRRIVV 422
>gi|254361080|ref|ZP_04977225.1| S16 family peptidase/DNA repair protein RadA [Mannheimia
haemolytica PHL213]
gi|452743943|ref|ZP_21943797.1| DNA repair protein RadA [Mannheimia haemolytica serotype 6 str.
H23]
gi|153092566|gb|EDN73621.1| S16 family peptidase/DNA repair protein RadA [Mannheimia
haemolytica PHL213]
gi|452088014|gb|EME04383.1| DNA repair protein RadA [Mannheimia haemolytica serotype 6 str.
H23]
Length = 459
Score = 332 bits (851), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 182/478 (38%), Positives = 281/478 (58%), Gaps = 26/478 (5%)
Query: 109 GKANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQR--TWLPQKPEE 166
KA +T +VC+DCG +W G C+ C++ T+ S E R + + +
Sbjct: 2 AKAPKTAYVCNDCGAEYSRWMGQCKECKAWNTISEVRLISSKEAAKSDRFSGYAGETSGK 61
Query: 167 VQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQ 226
VQ + + + + +P NE+ RVLGGG+VPGS +LIGG PG GKSTLLLQ
Sbjct: 62 VQTLSDISLQE--------VPRFSSGFNELDRVLGGGVVPGSAILIGGHPGAGKSTLLLQ 113
Query: 227 MAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQP 286
+ L + P +YV+GEES++Q+ RA+ + + T L + S T +E I
Sbjct: 114 VMC------GLAQHLPTLYVTGEESLQQVAMRANHLGLPTANLKMLSETSVEHICNIADQ 167
Query: 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIA 346
P+ ++IDSIQ ++L + S G + QV+EC S L R+AK + +++ GHVTK G +A
Sbjct: 168 EKPKIMVIDSIQVMHLSDIQSSPGSVSQVRECASFLTRYAKTRQVAIIMVGHVTKDGTLA 227
Query: 347 GPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFL 406
GP+VLEH +DA L +EGE S +R LRS KNRFG+ +ELGVF M++ GL+ V NPS IFL
Sbjct: 228 GPKVLEHAIDASLLLEGESDSRFRTLRSQKNRFGAVNELGVFAMTEQGLKEVKNPSAIFL 287
Query: 407 SEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVS---RHVNGIQASRADMIISV 463
S E G +V V+ +G+R L+EIQAL V S ++ R G+ +R ++++V
Sbjct: 288 SR---SEEQTPGSSVMVLWEGTRPLLVEIQAL-VDHSMLANPRRVAVGLDHNRLSLLLAV 343
Query: 464 LMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGG 523
L + GL++ + +F+NVV GV +TET+ DLA+ A+ SSF P+P + GE+GL G
Sbjct: 344 LHRHGGLQMSDQDVFVNVVGGVKVTETSADLALILALISSFRNRPLPQDLVIFGEVGLAG 403
Query: 524 ELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVFT 581
E+R V+ ++R+S AK G+++ I+P ++ + M+ K L + +++++
Sbjct: 404 EIRPVTSGQERISEAAKHGFKRAIIPHG---NVPKKAIKDMQVFTVKKLSDALDILYN 458
>gi|419465688|ref|ZP_14005574.1| DNA repair protein RadA [Streptococcus pneumoniae GA05248]
gi|379547260|gb|EHZ12397.1| DNA repair protein RadA [Streptococcus pneumoniae GA05248]
Length = 420
Score = 332 bits (851), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 186/422 (44%), Positives = 268/422 (63%), Gaps = 27/422 (6%)
Query: 165 EEVQPVRLLEV---NKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKS 221
E+ +P++L EV N + D E RVLGGG+VPGSLVLIGGDPG+GKS
Sbjct: 19 EKTKPMKLAEVTSINVNRTKTDME---------EFNRVLGGGVVPGSLVLIGGDPGIGKS 69
Query: 222 TLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIV 281
TLLLQ++ ++ V V+YVSGEES +QI RA+R+ E +LY+ T+++ +
Sbjct: 70 TLLLQVSTQLSQV------GTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSVR 123
Query: 282 EKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTK 341
+V+ + P LIIDSIQT+ ++G G + QV+E T+ L++ AK NI + + GHVTK
Sbjct: 124 AEVERIQPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELMQLAKTNNIAIFIVGHVTK 183
Query: 342 SGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNP 401
G +AGPR+LEH+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NP
Sbjct: 184 EGTLAGPRMLEHMVDTVLYFEGERHHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNP 243
Query: 402 SKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADM 459
S++FL E+ + G ++ V M+G+R L E+QAL R G+ +RA +
Sbjct: 244 SQVFLEERLDGA---TGSSIVVTMEGTRPILAEVQALVTPTMFGNAKRTTTGLDFNRASL 300
Query: 460 IISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEI 519
I++VL K+AGL LQ +L GV L E A DLAVA AI SS+ + P F+GE+
Sbjct: 301 IMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKPTNPQECFVGEL 360
Query: 520 GLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGF-EQMEFIGCKNLKEVINV 578
GL GE+R V+R+E+R++ AKLG+ K VP++ SL + ++++ IG ++EV+
Sbjct: 361 GLTGEIRRVNRIEQRINEAAKLGFTKIYVPQN---SLTGITLPKEIQVIGVTTIQEVLKK 417
Query: 579 VF 580
VF
Sbjct: 418 VF 419
>gi|423351373|ref|ZP_17329024.1| DNA repair protein RadA [Turicella otitidis ATCC 51513]
gi|404386602|gb|EJZ81754.1| DNA repair protein RadA [Turicella otitidis ATCC 51513]
Length = 463
Score = 332 bits (851), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 194/489 (39%), Positives = 277/489 (56%), Gaps = 52/489 (10%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTM------------------KRYSAGESDE 151
K RT +VCS+CGY+ G+W G C C S GT+ R +AG +
Sbjct: 3 KKARTLYVCSECGYSSGKWLGRCPECGSWGTLAAQASAPAGAGEGGGRGAHRSTAGVAPA 62
Query: 152 GPVVQRTWLPQKP-EEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLV 210
P KP ++ V G+ +LD RVLG G+VPGS+V
Sbjct: 63 SPA--------KPISSLRAADAAAVTTGIGELD--------------RVLGRGIVPGSVV 100
Query: 211 LIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPV-VYVSGEESVEQIGNRADRMMIATEEL 269
L+ G+PGVGKSTLLL++AA A G+ + V +YV+ EES Q+ RA+R + L
Sbjct: 101 LLAGEPGVGKSTLLLEVAARWARQRGSGDGNRVALYVTAEESAGQVRLRAERTGAVLDTL 160
Query: 270 FLYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKT 329
+L + +D++ ++ V+ +SP LI+DS+QTV GV G AGG+ Q + T+AL AK
Sbjct: 161 YLAAESDLDTLIGHVEAVSPSLLIVDSVQTVQAAGVEGVAGGVAQSRAVTAALTSLAKSR 220
Query: 330 NIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFE 389
+PVLL GHVTK G++AGPR LEH+VD VL EG++ SS R+LR +KNRFG+TDE+G FE
Sbjct: 221 GLPVLLVGHVTKDGNVAGPRTLEHLVDVVLNFEGDRHSSLRMLRGLKNRFGATDEVGCFE 280
Query: 390 MSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCV--SGSTVSR 447
+ G+ V +PS +FLS + + G AV V MDG R L E+Q+L V S R
Sbjct: 281 QTADGIAEVPDPSGLFLSHRDDTPD---GAAVTVAMDGVRPLLAEVQSLAVQTSAKNPRR 337
Query: 448 HVNGIQASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEF 507
V G+ R M+++VL +AGL + +++ V G+ + E A DLAVA A S+
Sbjct: 338 VVTGLDPQRVPMVLAVLAARAGLSTADREVYVATVGGMRIREPATDLAVAMATVSTLKNK 397
Query: 508 PIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFI 567
P+P ++GE+GL GELR VS +++R+ A+LGYR+ +VP + +G I
Sbjct: 398 PLPPRTVYVGEVGLAGELRRVSSLKRRLQEAARLGYRRAVVPAGDAPKVEGIG-----VI 452
Query: 568 GCKNLKEVI 576
+ LK+ I
Sbjct: 453 PAETLKDAI 461
>gi|385808622|ref|YP_005845018.1| DNA repair protein [Ignavibacterium album JCM 16511]
gi|383800670|gb|AFH47750.1| DNA repair protein [Ignavibacterium album JCM 16511]
Length = 449
Score = 332 bits (851), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 187/472 (39%), Positives = 278/472 (58%), Gaps = 32/472 (6%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVG--TMKRYSAGESDEGPVVQRTWLPQKPEEVQPV 170
+ +VCS+CGY +W G C CES T + +G+ V ++ + K E+
Sbjct: 5 KIKYVCSNCGYESLRWIGKCPECESWNSFTEELIESGKHKSAKAVLKSSI-HKLSEIAAT 63
Query: 171 RLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAI 230
+ G+ + D RVLGGGL+PGS+VL+GGDPG+GKSTL +Q AA
Sbjct: 64 EKERILTGITEFD--------------RVLGGGLMPGSVVLLGGDPGIGKSTLAMQAAA- 108
Query: 231 IADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPR 290
G V+YV+GEES +QI R+ R+ I ++ LF+ + T++ + ++ L P
Sbjct: 109 -------GIKEKVLYVTGEESEKQIKLRSSRLKIKSDSLFILAETELNQVTAAIESLKPS 161
Query: 291 ALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRV 350
+IIDSIQT+Y + S G + Q++EC + L+ AKK ++ V++ GHVTK G IAGP++
Sbjct: 162 VVIIDSIQTMYRNELDNSPGTVTQIRECAALLMDEAKKKHLSVIIIGHVTKEGIIAGPKI 221
Query: 351 LEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQH 410
LEH+VD V+ EGE S+R+LRS KNRFGST+E+GVFEM + GL+ V NPS++FLSE+
Sbjct: 222 LEHMVDTVIQFEGEANHSFRILRSQKNRFGSTNEIGVFEMREDGLREVKNPSELFLSERE 281
Query: 411 SDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQA 468
+ G V ++G+R L+E+QAL R NG R ++++VL K+A
Sbjct: 282 KQT---PGSVVTSTIEGTRPILLEVQALVTPSMYGYPQRVSNGFDQRRLSILLAVLEKRA 338
Query: 469 GLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMV 528
+K+ +F+NV G+ +TE A DLAV +I SS E I + IGE+GLGGELR V
Sbjct: 339 LVKVSSANVFINVAGGIKITEPAADLAVCLSIASSLSEKVIDSQTIVIGEVGLGGELRSV 398
Query: 529 SRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
S +EKR+ KLG+ I+P + + L +++ I +NL + IN++
Sbjct: 399 SNIEKRIQEAEKLGFDTVIIPHTNSRGLKQ--NPKIKVIPHENLSDTINLLI 448
>gi|334338867|ref|YP_004543847.1| DNA repair protein RadA [Desulfotomaculum ruminis DSM 2154]
gi|334090221|gb|AEG58561.1| DNA repair protein RadA [Desulfotomaculum ruminis DSM 2154]
Length = 450
Score = 332 bits (851), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 194/460 (42%), Positives = 276/460 (60%), Gaps = 26/460 (5%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVR 171
N+T + C CG+ +W G C C ++ V ++ P K + P+
Sbjct: 3 NKTTYACQQCGHQTARWMGRCPGCGEWNSL------------VEEKMVSPAKTVRLSPLS 50
Query: 172 LLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAII 231
+ + +GL E+ R LGGGLVPGSLVL+GGDPG+GKSTLLLQ AA +
Sbjct: 51 APIPVTDVAATEEERYATGL--KELDRALGGGLVPGSLVLVGGDPGIGKSTLLLQAAAAL 108
Query: 232 ADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRA 291
A+ + V+YVSGEES QI RA R+ + L + TDI + + LSP A
Sbjct: 109 AE-----KVGTVLYVSGEESARQIKMRAQRINALHPNILLMAETDISVVERHIHELSPAA 163
Query: 292 LIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVL 351
+++DSIQT + ++ + G + QV+ECT L+R AK T+IPV L GHVTK G +AGPRVL
Sbjct: 164 VVLDSIQTAFQPEISSTPGSVAQVRECTGVLMRVAKGTSIPVFLVGHVTKEGTLAGPRVL 223
Query: 352 EHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHS 411
EH+VD VLY EG++ S+R+LR+VKNRFGS ELG+FEM GL VSNPS +F+ +
Sbjct: 224 EHMVDTVLYFEGDRHQSFRILRTVKNRFGSAHELGIFEMRDFGLIEVSNPSALFMGQ--- 280
Query: 412 DSEFLAGLAVAVIMDGSRSFLIEIQAL-CVSG-STVSRHVNGIQASRADMIISVLMKQAG 469
S +AG + ++G+R L+EIQAL C SG T R G+ +R +I++VL ++ G
Sbjct: 281 SSRGVAGSVIVPSLEGTRPLLVEIQALVCASGFGTPRRMTAGVDPNRVALIMAVLERRVG 340
Query: 470 LKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVS 529
L+L + +++ + GV L E A DLA+A AI SSF E P+ + + +GE+GL GE+R VS
Sbjct: 341 LRLAAHDAYVSAMGGVKLDEPAVDLAIALAIASSFRERPVQDRLVVLGEVGLTGEIRAVS 400
Query: 530 RMEKRVSTVAKLGYRKCIVP--KSAEKSLATLGFEQMEFI 567
+EKR+ AKLG+ C+ P K SL + + +++ I
Sbjct: 401 GLEKRLQEAAKLGFSSCLGPLWKHQRDSLGIINYIEVQSI 440
>gi|385262257|ref|ZP_10040368.1| DNA repair protein RadA [Streptococcus sp. SK643]
gi|385191079|gb|EIF38505.1| DNA repair protein RadA [Streptococcus sp. SK643]
Length = 397
Score = 332 bits (851), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 178/389 (45%), Positives = 256/389 (65%), Gaps = 13/389 (3%)
Query: 195 EVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQ 254
E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ ++ V V+YVSGEES +Q
Sbjct: 20 EFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSQV------GTVLYVSGEESAQQ 73
Query: 255 IGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQ 314
I RA+R+ E +LY+ T+++ + +V+ + P LIIDSIQT+ ++G G + Q
Sbjct: 74 IKLRAERLGDIDSEFYLYAETNMQSVRAEVERIQPDFLIIDSIQTIMSPEISGVQGSVSQ 133
Query: 315 VKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRS 374
V+E T+ L++ AK NI + + GHVTK G +AGPR+LEH+VD VLY EGE+ ++R+LR+
Sbjct: 134 VREVTAELMQLAKTNNIAIFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGERHHTFRILRA 193
Query: 375 VKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIE 434
VKNRFGST+E+G+FEM GL V NPS++FL E+ + G ++ V M+G+R L E
Sbjct: 194 VKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGA---TGSSIVVTMEGTRPILAE 250
Query: 435 IQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAG 492
+QAL R G+ +RA +I++VL K+AGL LQ +L GV L E A
Sbjct: 251 VQALVTPTMFGNAKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAI 310
Query: 493 DLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSA 552
DLAVA AI SS+ + P F+GE+GL GE+R V+R+E+R++ AKLG+ K VPK++
Sbjct: 311 DLAVAVAIASSYKDKPTNPQECFVGELGLTGEIRRVNRIEQRINEAAKLGFTKIYVPKNS 370
Query: 553 EKSLATLGFEQMEFIGCKNLKEVINVVFT 581
+ ++++ IG ++EV+ VF+
Sbjct: 371 LTGIQPP--QEIQVIGVTTIQEVLKKVFS 397
>gi|385840764|ref|YP_005864088.1| DNA repair protein radA [Lactobacillus salivarius CECT 5713]
gi|300214885|gb|ADJ79301.1| DNA repair protein radA [Lactobacillus salivarius CECT 5713]
Length = 457
Score = 332 bits (851), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 188/476 (39%), Positives = 287/476 (60%), Gaps = 30/476 (6%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTM-----KRYSAGESDEGPVVQRTWLPQKPEEV 167
+T +VC +C Y ++ G C C S ++ K+ S+ ++ P V + KP+ +
Sbjct: 5 KTRYVCQNCEYISPRYLGRCPNCGSWNSLVEEIEKKESSTKAQ--PRVSISGTTVKPKLI 62
Query: 168 QPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQM 227
V +E + L+ E+ RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ+
Sbjct: 63 DDVSTVETPRFKTNLE-----------ELNRVLGGGIVPGSLVLIGGDPGIGKSTLLLQV 111
Query: 228 AAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPL 287
+ + LG+ V+YVSGEES QI RADR+ + EL+LY TD++ I + ++ L
Sbjct: 112 SG---QLSTLGKK--VLYVSGEESATQIKLRADRLGVHGTELYLYPETDMDSIRKNIELL 166
Query: 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAG 347
P ++IDS+QT+ + + G + Q++E T L++ AK I V + GHVTK G IAG
Sbjct: 167 KPDFVVIDSVQTMQEPEMTAAVGSVSQIREVTGDLMQIAKTNGITVFVVGHVTKGGAIAG 226
Query: 348 PRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLS 407
P++LEH+VD VLY EG++ ++R+LR+VKNRFGST+E+G+FEM GL V+NPS+IFL
Sbjct: 227 PKILEHMVDTVLYFEGDQHRTFRILRAVKNRFGSTNEIGIFEMKNGGLSEVANPSEIFLE 286
Query: 408 EQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLM 465
E+ + G AV ++G+R L+E+QAL + R G+ +R ++++VL
Sbjct: 287 ERLKGA---TGSAVVASLEGTRPILVELQALVTPTAFGNAKRTTTGLDHNRVALLMAVLE 343
Query: 466 KQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGEL 525
K+AGL LQ +L GV L E A DLA+A ++ SS+ + FIGE+GL GE+
Sbjct: 344 KRAGLLLQNQDAYLKAAGGVKLDEPAIDLAIAVSLVSSYRDAETRPTDCFIGEVGLTGEI 403
Query: 526 RMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVFT 581
R V+R+E+RV AKLG+++ +PK+ + + +E +G L + + ++F+
Sbjct: 404 RRVNRIEQRVVEAAKLGFKRVFLPKNNLDGW--MPPKDIEVVGVSTLNQALKLIFS 457
>gi|421277823|ref|ZP_15728635.1| DNA repair protein RadA [Streptococcus pneumoniae GA17301]
gi|421293173|ref|ZP_15743900.1| DNA repair protein RadA [Streptococcus pneumoniae GA56113]
gi|421299752|ref|ZP_15750424.1| DNA repair protein RadA [Streptococcus pneumoniae GA19998]
gi|395882942|gb|EJG93985.1| DNA repair protein RadA [Streptococcus pneumoniae GA17301]
gi|395896227|gb|EJH07194.1| DNA repair protein RadA [Streptococcus pneumoniae GA56113]
gi|395900849|gb|EJH11786.1| DNA repair protein RadA [Streptococcus pneumoniae GA19998]
Length = 397
Score = 332 bits (851), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 180/389 (46%), Positives = 256/389 (65%), Gaps = 15/389 (3%)
Query: 195 EVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQ 254
E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ ++ V V+YVSGEES +Q
Sbjct: 20 EFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSQV------GTVLYVSGEESAQQ 73
Query: 255 IGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQ 314
I RA+R+ E +LY+ T+++ + +V+ + P LIIDSIQT+ ++G G + Q
Sbjct: 74 IKLRAERLGDIDSEFYLYAETNMQSVRAEVERIQPDFLIIDSIQTIMSPEISGVQGSVSQ 133
Query: 315 VKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRS 374
V+E T+ L++ AK NI + + GHVTK G +AGPR+LEH+VD VLY EGE+ ++R+LR+
Sbjct: 134 VREVTAELMQLAKTNNIAIFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGERHHTFRILRA 193
Query: 375 VKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIE 434
VKNRFGST+E+G+FEM GL V NPS++FL E+ + G ++ V M+G+R L E
Sbjct: 194 VKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGA---TGSSIVVTMEGTRPILAE 250
Query: 435 IQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAG 492
+QAL R G+ +RA +I++VL K+AGL LQ +L GV L E A
Sbjct: 251 VQALVTPTMFGNAKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAI 310
Query: 493 DLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSA 552
DLAVA AI SS+ + P F+GE+GL GE+R V+R+E+R++ AKLG+ K VPK+
Sbjct: 311 DLAVAVAIASSYKDKPTNPQECFVGELGLTGEIRRVNRIEQRINEAAKLGFTKIYVPKN- 369
Query: 553 EKSLATLGF-EQMEFIGCKNLKEVINVVF 580
SL + ++++ IG ++EV+ VF
Sbjct: 370 --SLTGITLPKEIQVIGVTTIQEVLKKVF 396
>gi|342162763|ref|YP_004767402.1| DNA repair protein RadA [Streptococcus pseudopneumoniae IS7493]
gi|419520011|ref|ZP_14059610.1| DNA repair protein RadA [Streptococcus pneumoniae GA05245]
gi|419524811|ref|ZP_14064377.1| DNA repair protein RadA [Streptococcus pneumoniae GA14373]
gi|419529274|ref|ZP_14068809.1| DNA repair protein RadA [Streptococcus pneumoniae GA40028]
gi|419531334|ref|ZP_14070854.1| DNA repair protein RadA [Streptococcus pneumoniae GA47794]
gi|419533487|ref|ZP_14072996.1| DNA repair protein RadA [Streptococcus pneumoniae GA17457]
gi|421216385|ref|ZP_15673290.1| DNA repair protein RadA [Streptococcus pneumoniae 2070335]
gi|421265115|ref|ZP_15716000.1| DNA repair protein RadA [Streptococcus pneumoniae SPAR27]
gi|421269468|ref|ZP_15720325.1| DNA repair protein RadA [Streptococcus pneumoniae SPAR48]
gi|421273806|ref|ZP_15724642.1| DNA repair protein RadA [Streptococcus pneumoniae SPAR55]
gi|421280072|ref|ZP_15730871.1| DNA repair protein RadA [Streptococcus pneumoniae GA04672]
gi|421284651|ref|ZP_15735429.1| DNA repair protein RadA [Streptococcus pneumoniae GA60190]
gi|421288691|ref|ZP_15739443.1| DNA repair protein RadA [Streptococcus pneumoniae GA54354]
gi|421290831|ref|ZP_15741575.1| DNA repair protein RadA [Streptococcus pneumoniae GA56348]
gi|421301907|ref|ZP_15752572.1| DNA repair protein RadA [Streptococcus pneumoniae GA17484]
gi|421304008|ref|ZP_15754666.1| DNA repair protein RadA [Streptococcus pneumoniae GA62331]
gi|421306229|ref|ZP_15756876.1| DNA repair protein RadA [Streptococcus pneumoniae GA60132]
gi|421308509|ref|ZP_15759140.1| DNA repair protein RadA [Streptococcus pneumoniae GA62681]
gi|421310742|ref|ZP_15761355.1| DNA repair protein RadA [Streptococcus pneumoniae GA58981]
gi|341932645|gb|AEL09542.1| DNA repair protein RadA [Streptococcus pseudopneumoniae IS7493]
gi|379541635|gb|EHZ06800.1| DNA repair protein RadA [Streptococcus pneumoniae GA05245]
gi|379560515|gb|EHZ25537.1| DNA repair protein RadA [Streptococcus pneumoniae GA14373]
gi|379568948|gb|EHZ33925.1| DNA repair protein RadA [Streptococcus pneumoniae GA17457]
gi|379576178|gb|EHZ41106.1| DNA repair protein RadA [Streptococcus pneumoniae GA40028]
gi|379609660|gb|EHZ74397.1| DNA repair protein RadA [Streptococcus pneumoniae GA47794]
gi|395586285|gb|EJG46657.1| DNA repair protein RadA [Streptococcus pneumoniae 2070335]
gi|395870120|gb|EJG81233.1| DNA repair protein RadA [Streptococcus pneumoniae SPAR48]
gi|395871002|gb|EJG82114.1| DNA repair protein RadA [Streptococcus pneumoniae SPAR27]
gi|395871882|gb|EJG82983.1| DNA repair protein RadA [Streptococcus pneumoniae SPAR55]
gi|395883429|gb|EJG94471.1| DNA repair protein RadA [Streptococcus pneumoniae GA04672]
gi|395888571|gb|EJG99582.1| DNA repair protein RadA [Streptococcus pneumoniae GA60190]
gi|395889951|gb|EJH00957.1| DNA repair protein RadA [Streptococcus pneumoniae GA54354]
gi|395896631|gb|EJH07596.1| DNA repair protein RadA [Streptococcus pneumoniae GA56348]
gi|395902721|gb|EJH13653.1| DNA repair protein RadA [Streptococcus pneumoniae GA17484]
gi|395906399|gb|EJH17297.1| DNA repair protein RadA [Streptococcus pneumoniae GA62331]
gi|395909939|gb|EJH20813.1| DNA repair protein RadA [Streptococcus pneumoniae GA60132]
gi|395912654|gb|EJH23511.1| DNA repair protein RadA [Streptococcus pneumoniae GA62681]
gi|395913702|gb|EJH24551.1| DNA repair protein RadA [Streptococcus pneumoniae GA58981]
Length = 397
Score = 332 bits (851), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 180/389 (46%), Positives = 256/389 (65%), Gaps = 15/389 (3%)
Query: 195 EVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQ 254
E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ ++ V V+YVSGEES +Q
Sbjct: 20 EFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSQV------GTVLYVSGEESAQQ 73
Query: 255 IGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQ 314
I RA+R+ E +LY+ T+++ + +V+ + P LIIDSIQT+ ++G G + Q
Sbjct: 74 IKLRAERLGDIDSEFYLYAETNMQSVRAEVERIQPDFLIIDSIQTIMSPEISGVQGSVSQ 133
Query: 315 VKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRS 374
V+E T+ L++ AK NI + + GHVTK G +AGPR+LEH+VD VLY EGE+ ++R+LR+
Sbjct: 134 VREVTAELMQLAKTNNIAIFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGERHHTFRILRA 193
Query: 375 VKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIE 434
VKNRFGST+E+G+FEM GL V NPS++FL E+ + G ++ V M+G+R L E
Sbjct: 194 VKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGA---TGSSIVVTMEGTRPILAE 250
Query: 435 IQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAG 492
+QAL R G+ +RA +I++VL K+AGL LQ +L GV L E A
Sbjct: 251 VQALVTPTMFGNAKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAI 310
Query: 493 DLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSA 552
DLAVA AI SS+ + P F+GE+GL GE+R V+R+E+R++ AKLG+ K VPK+
Sbjct: 311 DLAVAVAIASSYKDKPTNPQECFVGELGLTGEIRRVNRIEQRINEAAKLGFTKIYVPKN- 369
Query: 553 EKSLATLGF-EQMEFIGCKNLKEVINVVF 580
SL + ++++ IG ++EV+ VF
Sbjct: 370 --SLTGITLPKEIQVIGVTTIQEVLKKVF 396
>gi|443312754|ref|ZP_21042369.1| DNA repair protein RadA [Synechocystis sp. PCC 7509]
gi|442777210|gb|ELR87488.1| DNA repair protein RadA [Synechocystis sp. PCC 7509]
Length = 497
Score = 332 bits (851), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 187/461 (40%), Positives = 281/461 (60%), Gaps = 34/461 (7%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGP---VVQRTWLPQKPEEVQP 169
RT +VC+DCG QW+G C C + +++ S P VQ K +
Sbjct: 5 RTYYVCNDCGGDSPQWFGKCPHCGTYNSLEEQIESSSSMLPSRGAVQSGRNNGKSNKPAK 64
Query: 170 VRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAA 229
R + D LSG +E+ RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++
Sbjct: 65 ARAALTFAQITPRDEERWLSGY--SELDRVLGGGIVPGSLVLIGGDPGIGKSTLLLQVSN 122
Query: 230 IIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATE------------------ELFL 271
++A+ + V+YV GEES +Q+ RA R+ + + +L++
Sbjct: 123 LLAENYR------VLYVCGEESGQQVKLRASRLGVFNKLQSQSQVAEITNNKREGADLYV 176
Query: 272 YSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNI 331
TD+E+I+ +++ L P +IDSIQT+YL + + G + QV+ECT+AL++ AK+ +I
Sbjct: 177 LPETDLEEILRELESLKPNVAVIDSIQTIYLPSMTSAPGSVAQVRECTAALMKVAKREDI 236
Query: 332 PVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMS 391
+L+ GHVTK G IAGP+VLEH+VD VLY EG++F+S+RLLRSVKNRFG+T E+GVFEM
Sbjct: 237 TLLIVGHVTKEGAIAGPKVLEHLVDTVLYFEGDRFASHRLLRSVKNRFGATHEIGVFEMV 296
Query: 392 QLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHV 449
+ GL+ V+NPS++FL + + G A+ V +G+R ++E+QAL S S+ R
Sbjct: 297 EQGLREVANPSELFLGTRDQST---PGTALVVACEGTRPIVVELQALVSPTSYSSPRRST 353
Query: 450 NGIQASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPI 509
G+ +R I++VL K+ G+ L + ++ G+ + E A DL +A A+ +SF + +
Sbjct: 354 TGVDYNRLLQILAVLEKRVGIPLSKLDTYVASAGGLNVEEPAVDLGIAIAVVASFRDRVV 413
Query: 510 PNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPK 550
+GE+GLGG++R VS+ME R+ AKLG+++ IVPK
Sbjct: 414 DPHTVLMGEVGLGGQIRPVSQMELRLKEAAKLGFKRAIVPK 454
>gi|33239607|ref|NP_874549.1| DNA repair protein RadA [Prochlorococcus marinus subsp. marinus
str. CCMP1375]
gi|33237132|gb|AAP99201.1| DNA repair protein sms, radA homolog [Prochlorococcus marinus
subsp. marinus str. CCMP1375]
Length = 461
Score = 332 bits (851), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 189/481 (39%), Positives = 282/481 (58%), Gaps = 43/481 (8%)
Query: 114 TNWVCSDCGYTDGQWWGMCRAC--------ESVGTM----KRYSAGESDEGPVVQRTWLP 161
T ++C CG Q++G C C E + T KR + S+E + R+
Sbjct: 6 TIYICQTCGAETRQFFGRCSTCGEWNSVVEEVISTSNLRPKRKGSNHSNE-LLDNRS--- 61
Query: 162 QKPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKS 221
Q+ +Q + ++ G K+LD RVLGGGLVPGSLVLIGGDPG+GKS
Sbjct: 62 QRISSLQEKSVKRISSGYKELD--------------RVLGGGLVPGSLVLIGGDPGIGKS 107
Query: 222 TLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIV 281
TLLLQ A ++ ++Y++ EES Q+ R +R+ A +L L + TD+E I+
Sbjct: 108 TLLLQSAT------EMARYKSILYITAEESSNQVQLRWNRLGKADSDLHLLAETDLEAIL 161
Query: 282 EKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTK 341
+++ +P IIDSIQ ++ + + G + QV+EC++AL R AK NI +L+ GH+TK
Sbjct: 162 NEIERFNPAVAIIDSIQAIHDETIGSTPGSVTQVRECSAALQRIAKAKNITLLIVGHITK 221
Query: 342 SGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNP 401
G +AGP+VLEH+VDAVL EG++F+S+R+LR++KNRFG+T+ELGVFEM GL V+NP
Sbjct: 222 EGMLAGPKVLEHLVDAVLTFEGDRFASHRILRTIKNRFGATNELGVFEMQGKGLIEVNNP 281
Query: 402 SKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVS--RHVNGIQASRADM 459
S++FL DSE G+A V +G+R I++QAL S S R GI+ +R
Sbjct: 282 SELFL-----DSENAPGIATIVSCEGTRPLAIDLQALINQTSYPSPRRTATGIETNRLHQ 336
Query: 460 IISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEI 519
I++V+ K + L +L V G+A+ E A DL +AAA+ SS+ + +P G IGEI
Sbjct: 337 ILAVVEKHMNIALSRYDCYLAVAGGLAVEEPAADLGIAAAVISSYKKTALPKGTVLIGEI 396
Query: 520 GLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVV 579
GLGG+LR V +M+ R+ +LG++ I+PK+ K + +++ N+ EV +V
Sbjct: 397 GLGGQLRSVGQMQLRLREAERLGFKTAIIPKATNKDSLSKQEGKIDIQEVSNINEVFEIV 456
Query: 580 F 580
Sbjct: 457 L 457
>gi|320547578|ref|ZP_08041863.1| DNA repair protein RadA [Streptococcus equinus ATCC 9812]
gi|320447653|gb|EFW88411.1| DNA repair protein RadA [Streptococcus equinus ATCC 9812]
Length = 405
Score = 332 bits (851), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 181/390 (46%), Positives = 252/390 (64%), Gaps = 17/390 (4%)
Query: 165 EEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLL 224
E+ +P +L K + +++ +G+ +E RVLGGG+VPGSLVLIGGDPG+GKSTLL
Sbjct: 4 EKSKPTKL----KDVSSINYSRTKTGM--DEFNRVLGGGVVPGSLVLIGGDPGIGKSTLL 57
Query: 225 LQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKV 284
LQ++ L E V+YVSGEES EQI R++R+ E +LY+ T+++ I ++
Sbjct: 58 LQVSI------QLAEKGTVLYVSGEESAEQIKLRSERLGNIDNEFYLYAETNMQAIRAQI 111
Query: 285 QPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGD 344
+ + P LIIDSIQT+ ++G G + QV+E T+ L++ AK NI + GHVTK G
Sbjct: 112 EQIQPDFLIIDSIQTIMSPDISGVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGQ 171
Query: 345 IAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKI 404
+AGPR+LEH+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS++
Sbjct: 172 LAGPRMLEHMVDTVLYFEGERHHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQV 231
Query: 405 FLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIIS 462
FL E+ + G A+ V M+GSR L E+QAL R G+ +R +I++
Sbjct: 232 FLEERLDGA---TGSAIVVTMEGSRPILAEVQALVTPTVFGNAKRTTTGLDFNRVSLIMA 288
Query: 463 VLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLG 522
VL K+ GL LQ +L GV L E A DLAVA AI SS+ E P AFIGEIGL
Sbjct: 289 VLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTNPQEAFIGEIGLT 348
Query: 523 GELRMVSRMEKRVSTVAKLGYRKCIVPKSA 552
GE+R V+R+E+R++ AKLG+ K PK++
Sbjct: 349 GEIRRVTRIEQRINEAAKLGFTKVYAPKNS 378
>gi|295425607|ref|ZP_06818294.1| DNA repair protein RadA [Lactobacillus amylolyticus DSM 11664]
gi|295064623|gb|EFG55544.1| DNA repair protein RadA [Lactobacillus amylolyticus DSM 11664]
Length = 458
Score = 332 bits (851), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 189/472 (40%), Positives = 276/472 (58%), Gaps = 21/472 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T + C CGY + G C C + ++ + + L +K +PV L
Sbjct: 5 KTQYKCRSCGYISASYLGRCPNCGAWNQFEKETQEVQKHSAKAAPSQLIKKTGINEPVNL 64
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
+V + + RIP E+ RVLGGG+VPGSLVLIGGDPG+GKSTL+LQ+ +
Sbjct: 65 EKVKA---EKENRIPTES---EELNRVLGGGIVPGSLVLIGGDPGIGKSTLMLQIMS--- 115
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
DL + V+YVSGEES QI RADR+ + ++ LY TD+ DI E + + P +
Sbjct: 116 ---DLSKKYKVLYVSGEESANQIKLRADRLGVGQSQMLLYPETDMHDIRETIDDIKPDFV 172
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
+IDSIQT+ + G QV+E TS L++ AK I V + GHVTK G IAGP++LE
Sbjct: 173 VIDSIQTMNEPSLDSMTGSASQVREVTSELMKIAKMDAITVFVIGHVTKEGAIAGPKILE 232
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EG++ SYR+L SVKNRFG+ +E+G+FEM GL+ V+N S IFL ++
Sbjct: 233 HMVDTVLYFEGDEHHSYRILHSVKNRFGAANEIGMFEMENGGLREVTNTSSIFLDQRLPQ 292
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMKQAGL 470
S G AV V ++G+R L EIQAL + R +GI +RA ++++VL K+ L
Sbjct: 293 S---TGSAVVVSLEGTRPLLAEIQALVTPTAFGYAKRTTSGIDYNRAALLLAVLEKRGNL 349
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ ++L G+ L+E A DLA A+ SS+ + I F+GE+GL GE+R V++
Sbjct: 350 MLQNQDVYLTATGGICLSEPAIDLAAIMAVASSYTDKEIQPTDCFVGEVGLTGEVRRVNK 409
Query: 531 MEKRVSTVAKLGYRKCIVPK-SAEKSLATLGFEQMEFIGCKNLKEVINVVFT 581
+E RV AK+G+++ +P+ + KSL G +E I ++ + + +VF
Sbjct: 410 IEARVKEAAKVGFKRIFIPRHNLSKSLMNNG---IEVIPVSSVPQALKLVFN 458
>gi|409098981|ref|ZP_11219005.1| DNA repair protein RadA [Pedobacter agri PB92]
Length = 458
Score = 332 bits (851), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 185/477 (38%), Positives = 287/477 (60%), Gaps = 31/477 (6%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQR--TWLPQKPEEVQP 169
+T + C CGY +W G C +C T +V++ T +P E
Sbjct: 4 TKTAYFCQSCGYESAKWLGKCPSCAQWNTFVE---------EIVEKAATSVPTWKTETSS 54
Query: 170 VRLLE---VNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQ 226
+L + V+ ++ RI L+G E+ RVLGGGLV GSLVLIGG+PG+GKSTL+LQ
Sbjct: 55 RKLSKPSKVDDIQSSVERRI-LTG--DKELDRVLGGGLVEGSLVLIGGEPGIGKSTLMLQ 111
Query: 227 MAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMM-IATEELFLYSSTDIEDIVEKVQ 285
+A + + ++Y+SGEES +QI RA+R+ + + ++ + T ++I ++++
Sbjct: 112 LALNL-------KGKKLLYISGEESEQQIKMRAERIKETPSSDCYILTETSTQNIFKQIE 164
Query: 286 PLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDI 345
L P L++DSIQT++ + + G + QV+ECT+ LLRFAK+T +PV L GH+TK G I
Sbjct: 165 ILEPEILVVDSIQTLHSSHIDSTPGSVSQVRECTAELLRFAKETGVPVFLIGHITKDGAI 224
Query: 346 AGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIF 405
AGP++LEH+VD VL EG++ YR+LRS+KNRFG+ ELG++EM GL+ VSNPS+I
Sbjct: 225 AGPKILEHMVDTVLQFEGDRHHVYRILRSIKNRFGAAAELGIYEMQGSGLREVSNPSEIL 284
Query: 406 LSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISV 463
LS++ E L+G+A++ +++G+R LIE QAL S + T R G R +M+++V
Sbjct: 285 LSQR---DEELSGIAISAMLEGARPMLIETQALVSSAAYGTPQRSATGFDTKRMNMLLAV 341
Query: 464 LMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGG 523
L K+ G +L +FLN+ G+ + + A DLAV AI SS + PI + F E+GL G
Sbjct: 342 LEKRCGFRLSTQDVFLNIAGGIRVEDPAIDLAVLIAIISSQQDIPISSKSCFAAEVGLSG 401
Query: 524 ELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
E+R V+R+E+R++ KLG+ + K K + + +E ++EV ++F
Sbjct: 402 EIRAVNRIEQRIAEADKLGFETIYISKYNLKGIDISKY-NLEVKAVSKIEEVFEMIF 457
>gi|167855234|ref|ZP_02478004.1| predicted repair protein [Haemophilus parasuis 29755]
gi|167853687|gb|EDS24931.1| predicted repair protein [Haemophilus parasuis 29755]
Length = 458
Score = 332 bits (851), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 190/481 (39%), Positives = 283/481 (58%), Gaps = 37/481 (7%)
Query: 109 GKANRTNWVCSDCGYTDGQWWGMCRAC---ESVGTMKRYSAGESDE----GPVVQRTWLP 161
KA +T +VC+DCG +W G C+AC ++ ++ SA ES G + T
Sbjct: 2 AKAPKTAYVCNDCGAEYARWMGQCKACLAWNTISEVRLISAKESKSDRLSGYAGETTGKI 61
Query: 162 QKPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKS 221
Q+ E+ + + G +LD RVLGGG+VPGS +LIGG PG GKS
Sbjct: 62 QRLSEIDLQEVPRFSSGFYELD--------------RVLGGGIVPGSAILIGGHPGAGKS 107
Query: 222 TLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIV 281
TLLLQ+ L + P +YV+GEES++Q+ RA+R+ + T+ L + S T +E I
Sbjct: 108 TLLLQVMC------GLSQSVPTLYVTGEESLQQVAMRANRLGLPTDNLKMLSETSVEHIC 161
Query: 282 EKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTK 341
P+ ++IDSIQ ++L + S G + QV+EC + L R+AK + +++ GHVTK
Sbjct: 162 NLADQEKPKLMVIDSIQVMHLADIQSSPGSVAQVRECAAFLTRYAKTRQVAIIMVGHVTK 221
Query: 342 SGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNP 401
G +AGP+VLEH +DA L +EGE S YR LRS KNRFG+ +ELGVF M++ GL+ V NP
Sbjct: 222 DGTLAGPKVLEHAIDASLLLEGEADSRYRTLRSQKNRFGAVNELGVFAMTEQGLKEVKNP 281
Query: 402 SKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVS---RHVNGIQASRAD 458
S IFLS E +G +V V+ +G+R L+EIQAL V S ++ R G++ +R
Sbjct: 282 SAIFLSRSE---EQTSGSSVMVLWEGTRPLLVEIQAL-VDHSMLANPRRVAVGLEQNRLS 337
Query: 459 MIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGE 518
++++VL + GL++ + +F+NVV GV +TET+ DLA+ A+ SSF P+P + GE
Sbjct: 338 LLLAVLHRHGGLQMSDQDVFVNVVGGVKVTETSADLALLLALISSFRNRPLPQDLVVFGE 397
Query: 519 IGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINV 578
+GL GE+R V ++R+S AK G+++ I+P A G ME K L + +++
Sbjct: 398 VGLAGEIRPVPSGQERISEAAKHGFKRAIIPHGNAPKKAIKG---MEVFTVKKLSDALDI 454
Query: 579 V 579
V
Sbjct: 455 V 455
>gi|419777811|ref|ZP_14303714.1| DNA repair protein RadA [Streptococcus oralis SK10]
gi|383187898|gb|EIC80341.1| DNA repair protein RadA [Streptococcus oralis SK10]
Length = 407
Score = 332 bits (850), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 183/420 (43%), Positives = 266/420 (63%), Gaps = 24/420 (5%)
Query: 163 KPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKST 222
KP ++ V + VN+ +++ E RVLGGG+VPGSLVLIGGDPG+GKST
Sbjct: 9 KPMKLAEVTSINVNRTKTEME-----------EFNRVLGGGVVPGSLVLIGGDPGIGKST 57
Query: 223 LLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVE 282
LLLQ++ ++ V V+YVSGEES +QI RA+R+ E +LY+ T+++ +
Sbjct: 58 LLLQVSTQLSQV------GTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSVRS 111
Query: 283 KVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKS 342
+V+ + P LIIDSIQT+ ++G G + QV+E T+ L++ AK NI + + GHVTK
Sbjct: 112 EVERIQPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELMQLAKTNNIAIFIVGHVTKE 171
Query: 343 GDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPS 402
G +AGPR+LEH+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS
Sbjct: 172 GTLAGPRMLEHMVDTVLYFEGERHHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPS 231
Query: 403 KIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMI 460
++FL E+ + G ++ V M+G+R L E+QAL R G+ +RA +I
Sbjct: 232 QVFLEERLDGA---TGSSIVVTMEGTRPILAEVQALVTPTMFGNAKRTTTGLDFNRASLI 288
Query: 461 ISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIG 520
++VL K+AGL LQ +L GV L E A DLAVA AI SS+ + P F+GE+G
Sbjct: 289 MAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKPTNPQECFVGELG 348
Query: 521 LGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
L GE+R V+R+E+R++ KLG+ K VPK++ + +++E IG ++EV+ VF
Sbjct: 349 LTGEIRRVNRIEQRINEAEKLGFTKIYVPKNSLTGITPP--KEIEVIGVTTIQEVLKKVF 406
>gi|417642985|ref|ZP_12293056.1| DNA repair protein RadA [Staphylococcus warneri VCU121]
gi|445060497|ref|YP_007385901.1| DNA repair protein RadA [Staphylococcus warneri SG1]
gi|330686239|gb|EGG97851.1| DNA repair protein RadA [Staphylococcus epidermidis VCU121]
gi|443426554|gb|AGC91457.1| DNA repair protein RadA [Staphylococcus warneri SG1]
Length = 454
Score = 332 bits (850), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 187/473 (39%), Positives = 284/473 (60%), Gaps = 36/473 (7%)
Query: 118 CSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRLLEVNK 177
C CGY +W G C C + M+ +V++ P+ V+ E
Sbjct: 10 CMACGYQSPKWMGKCPNCGAWNQMEE----------IVEKAANPK-----HGVKSKETAG 54
Query: 178 GMKQLD----WRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIAD 233
++ LD P E RVLGGG+V GSLVLIGGDPG+GKSTLLLQ+ A
Sbjct: 55 KVQTLDSIKNESTPRVLTESKEFNRVLGGGIVNGSLVLIGGDPGIGKSTLLLQICA---- 110
Query: 234 VHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALI 293
L + V+Y++GEES+ Q RADR+ + +L + + TD+E I + V+ ++P L+
Sbjct: 111 --SLSQSKNVLYITGEESINQTKLRADRLEEDSSKLQVLAETDLEVIYQTVKDINPDLLV 168
Query: 294 IDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEH 353
+DSIQT+Y ++ + G + QV+E T +L+ AK+ NI + GHVTK G IAGPR+LEH
Sbjct: 169 VDSIQTIYHPEISSAPGSVSQVRESTQSLMNIAKQMNIATFIVGHVTKEGQIAGPRLLEH 228
Query: 354 IVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDS 413
+VD VLY EG++ +YR+LR+VKNRFGST+E+G+FEM Q GL+ V NPS++FL E+ ++
Sbjct: 229 MVDTVLYFEGDEHHAYRILRAVKNRFGSTNEMGIFEMKQSGLKGVLNPSEMFLEERSTN- 287
Query: 414 EFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVS---RHVNGIQASRADMIISVLMKQAGL 470
+ G + M+G+R LIE+QAL V+ +T + R GI +R ++++VL K+
Sbjct: 288 --VPGSTIVSTMEGTRPLLIEVQAL-VTPTTFNNPRRMATGIDHNRLSLLMAVLEKKENY 344
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ+ ++ V GV LTE A DL++ A SSF + + FIGE+GL GE+R V+R
Sbjct: 345 LLQQQDAYIKVAGGVKLTEPAVDLSIIVATASSFKDKAVDGLDCFIGEVGLTGEVRRVAR 404
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGF-EQMEFIGCKNLKEVINVVFTT 582
+E+RV AKLG+++ I+P++ ++ F E ++ +G ++ E + F +
Sbjct: 405 IEQRVQEAAKLGFKRVIIPQT---NIGGWTFPEDIKVVGVSSVHEALKYAFNS 454
>gi|297620495|ref|YP_003708632.1| DNA repair protein RadA [Waddlia chondrophila WSU 86-1044]
gi|297375796|gb|ADI37626.1| DNA repair protein RadA [Waddlia chondrophila WSU 86-1044]
gi|337292611|emb|CCB90627.1| DNA repair protein radA homolog [Waddlia chondrophila 2032/99]
Length = 457
Score = 332 bits (850), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 185/473 (39%), Positives = 277/473 (58%), Gaps = 22/473 (4%)
Query: 111 ANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPV 170
+T W CSDCG +W G C C++ T++ E E R + Q + +PV
Sbjct: 5 TTKTVWHCSDCGAKQHKWVGQCPICQAWNTLE-----EEIELKAPPR-FSAQPAKSNKPV 58
Query: 171 RLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAI 230
RL EV P NE R++GGG+VPGSL LIGG+PG+GKSTL+LQ++
Sbjct: 59 RLREVKPS------ETPRILTKINEFDRLIGGGVVPGSLTLIGGEPGIGKSTLMLQLSQA 112
Query: 231 IADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPR 290
A+ + V+YV+GEESVEQ RA R+ I ++ L L S T+ I +V + P
Sbjct: 113 FAE-----KGLKVLYVTGEESVEQTSLRAQRLGILSDNLLLLSETNYSHIKAQVDQVQPD 167
Query: 291 ALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRV 350
+I+DSIQ VY ++ + G + QV+E T+ + AK I L GHVTKSG+IAGPR+
Sbjct: 168 VMIVDSIQIVYKPEISSAPGSVSQVRENTNEFMHIAKGYGIATFLIGHVTKSGEIAGPRI 227
Query: 351 LEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQH 410
LEH+VD VLY EG+K ++YR++R VKNRFG TDE+ VF+M Q GL VSNPS +FL E+
Sbjct: 228 LEHLVDTVLYFEGDKQNNYRMIRVVKNRFGPTDEIAVFQMRQDGLAQVSNPSHLFLEERA 287
Query: 411 SDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQA 468
+ ++G + ++GSR +IE+QAL ST SR GI ++R ++++VL K+
Sbjct: 288 KE---MSGSVIIPTLEGSRPIMIEVQALVTETVFSTPSRRTTGIDSNRLALLLAVLEKKM 344
Query: 469 GLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMV 528
G + ++ +F++V G+ + E DL + A+ SS + +GE+GLGGE+R +
Sbjct: 345 GYLMHKSDVFVSVAGGMKIAEPGIDLGLLLAVASSMRNHKVDPFTTVMGEVGLGGEIRAI 404
Query: 529 SRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVFT 581
R+E R+ +G+++CI+P+ K L EQ+ G + +++ I+ F
Sbjct: 405 PRVEGRIKEAVHMGFKRCIIPERNIKGLPPELSEQINIQGAEVVEQAISHTFN 457
>gi|258513610|ref|YP_003189832.1| DNA repair protein RadA [Desulfotomaculum acetoxidans DSM 771]
gi|257777315|gb|ACV61209.1| DNA repair protein RadA [Desulfotomaculum acetoxidans DSM 771]
Length = 457
Score = 332 bits (850), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 189/442 (42%), Positives = 284/442 (64%), Gaps = 21/442 (4%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVR 171
+T + C +CG +W G C +CE+ +M +S G V++ P + QPV
Sbjct: 3 QKTIYCCQECGSQSPRWVGRCPSCEAWNSMVEEMPVKS-AGAVLRGKTEPVR----QPVL 57
Query: 172 LLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAII 231
L EV + + RIP +G+ E+ RVLGGG+VPGSL+L+GG+PG+GKSTLLLQ+A +I
Sbjct: 58 LTEV---LLYAENRIP-TGI--KEMDRVLGGGIVPGSLILLGGEPGIGKSTLLLQVAFLI 111
Query: 232 ADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRA 291
+ V+YV GEES++Q+ RA+R+ +E + L + +++ + +++ P
Sbjct: 112 GK-----DNREVIYVCGEESMQQVRLRAERLNSISENVLLLAENNVDRVELQIKERKPFL 166
Query: 292 LIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVL 351
+IIDS+QT+Y ++ S G + QV+EC S L+R AK + + L GHVTK G IAGP+VL
Sbjct: 167 VIIDSVQTIYKESLSSSPGSVGQVRECASQLMRLAKMMDTAIFLVGHVTKDGAIAGPKVL 226
Query: 352 EHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHS 411
EH+VDAVLY EGE+ S+RLLR VKNRFGST+E+G+F M+ GL +NPS +F+ QH
Sbjct: 227 EHMVDAVLYFEGERHQSFRLLRGVKNRFGSTNEIGIFNMAGNGLIEATNPSSLFM--QHW 284
Query: 412 DSEFLAGLAVAVIMDGSRSFLIEIQAL-CVSGSTVSRHV-NGIQASRADMIISVLMKQAG 469
+ G + ++G+R L+EIQAL C +G + R + G+ +R +II+VL ++ G
Sbjct: 285 QVP-VPGSVIVPTIEGTRPLLVEIQALVCPTGFGLPRRMATGVDYNRVALIIAVLERRLG 343
Query: 470 LKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVS 529
+L + I++N V GV + E A DL++A AI SSF + P+ G+A GEIGL GE+R V+
Sbjct: 344 YQLSKYDIYVNAVGGVKIEEPAVDLSIALAIASSFHDRPLGLGLAVAGEIGLTGEVRPVA 403
Query: 530 RMEKRVSTVAKLGYRKCIVPKS 551
+EKR+S +LG++K IVP++
Sbjct: 404 SIEKRLSEAGELGFKKTIVPEA 425
>gi|238853162|ref|ZP_04643549.1| DNA repair protein RadA [Lactobacillus gasseri 202-4]
gi|238834216|gb|EEQ26466.1| DNA repair protein RadA [Lactobacillus gasseri 202-4]
Length = 459
Score = 332 bits (850), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 189/473 (39%), Positives = 272/473 (57%), Gaps = 22/473 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T + C +CGY + G C C + + + + L K PV+L
Sbjct: 5 KTRYKCRNCGYISASYLGRCPNCGAWNQFEEETQEVKKVSTKATASRLMTKIGNNDPVKL 64
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
EV K K+ P E+ RVLGGG+VPGSLVLIGGDPG+GKSTL+LQ+ +A
Sbjct: 65 NEV-KAEKEKRIVTPFE-----ELNRVLGGGIVPGSLVLIGGDPGIGKSTLMLQITGALA 118
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
H V+YVSGEES QI RADR+ ++ + LY T++++I E++ + P L
Sbjct: 119 KEHS------VLYVSGEESASQIKMRADRLGVSNSGILLYPETNMQNIREQIDEIKPDFL 172
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
+IDSIQT+ + G QV+E TS L++ AK I + GHVTK G IAGP+++E
Sbjct: 173 VIDSIQTMNEPSLDSMVGSASQVREVTSELMKIAKNDQITTFVIGHVTKEGAIAGPKIME 232
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EG+ SYR+LRSVKNRFG+ +E+G+FEM GL V+NPS IFL E+ +
Sbjct: 233 HMVDTVLYFEGDGHHSYRILRSVKNRFGAANEIGMFEMKNEGLTEVNNPSAIFLDERLPN 292
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMKQAGL 470
S G AV V ++G+R L +IQAL + R +G+ +R ++++VL K+ L
Sbjct: 293 S---TGSAVVVSLEGTRPLLADIQALVTPTAFGYAKRTTSGLDFNRVALLLAVLEKRGNL 349
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ FL G+ L E A DLA+ A+ SS+ I F+GE+GL GE+R V++
Sbjct: 350 MLQNQDAFLTATGGIKLNEPAIDLAICMAVASSYKNKEISATDCFVGEVGLTGEIRRVNQ 409
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLAT--LGFEQMEFIGCKNLKEVINVVFT 581
+E RV AK+G+++ +PK +L T ++E IG +L + + +VF
Sbjct: 410 IEARVKEAAKVGFKRIFIPK---HNLTTELKNNSEIEVIGVASLPQALKLVFN 459
>gi|88801689|ref|ZP_01117217.1| putative DNA repair protein [Polaribacter irgensii 23-P]
gi|88782347|gb|EAR13524.1| putative DNA repair protein [Polaribacter irgensii 23-P]
Length = 453
Score = 332 bits (850), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 182/443 (41%), Positives = 265/443 (59%), Gaps = 27/443 (6%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T + C +CG +W G C AC+ T+ + + +R W Q Q V
Sbjct: 5 KTTFFCQNCGTQHAKWVGQCSACKEWNTIVEEIIQQEE-----KRIW-KQSTTAKQTV-- 56
Query: 173 LEVNKGMKQLDWRI-PLSGLFGN--EVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAA 229
NK +K D ++ P + N E+ VLGGGLV GS+ L+GG+PG+GKSTLLLQ+A
Sbjct: 57 ---NKPLKIADIQLNPEERIVTNNKELDTVLGGGLVKGSVTLLGGEPGIGKSTLLLQVA- 112
Query: 230 IIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSP 289
L V+YVSGEES QI RADR+ + + T+ + I + ++ P
Sbjct: 113 -------LNIRQKVLYVSGEESQSQIKMRADRLEANNSNCLILTETNTQQIFKNIEETEP 165
Query: 290 RALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPR 349
L+IDSIQT++ + + S G + Q++E + L++FAK+T PVLL GH+ K G+IAGP+
Sbjct: 166 EVLVIDSIQTLHTKNIDASPGSISQIRETAAELIKFAKETATPVLLIGHINKDGNIAGPK 225
Query: 350 VLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQ 409
+LEH+VD VL EG++ +YR+LRS KNRFGST ELG++EM GL+ +SNPS+I +S++
Sbjct: 226 ILEHMVDVVLQFEGDRNHTYRILRSQKNRFGSTSELGIYEMLSTGLREISNPSEILISKK 285
Query: 410 HSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQ 467
SD L+G A+A ++G R +IEIQAL + T R G R +MI++VL K+
Sbjct: 286 DSD---LSGTAIASTLEGIRPLMIEIQALVSTAVYGTPQRSTTGYNLKRLNMILAVLEKR 342
Query: 468 AGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRM 527
AG KL +FLN+ G+ + + A DLAV AAI SS + I + F E+GL GE+R
Sbjct: 343 AGFKLGAKDVFLNITGGINVDDPAIDLAVVAAILSSNQDIAINPNVCFAAEVGLAGEIRP 402
Query: 528 VSRMEKRVSTVAKLGYRKCIVPK 550
VS++++R+ KLGY+ + K
Sbjct: 403 VSKIDQRILEAEKLGYKTLVASK 425
>gi|78044393|ref|YP_361152.1| DNA repair protein RadA [Carboxydothermus hydrogenoformans Z-2901]
gi|77996508|gb|ABB15407.1| DNA repair protein RadA [Carboxydothermus hydrogenoformans Z-2901]
Length = 444
Score = 332 bits (850), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 202/474 (42%), Positives = 287/474 (60%), Gaps = 44/474 (9%)
Query: 116 WVCSDCGYTDGQWWGMCRACESVGTM---KRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+ C +CGY +W G C ACES T K + G++ G EV+PV +
Sbjct: 6 YFCQNCGYETYKWLGRCPACESWNTFVEEKVLAKGKAVFG-------------EVEPVGI 52
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
++ G S FG E+ RVLGGG+V GSL+L+GGDPG+GKSTLLLQ+A
Sbjct: 53 SKILTGETD-----RFSTGFG-ELDRVLGGGIVAGSLILLGGDPGIGKSTLLLQLAG--- 103
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+G+ V+YVSGEES QI RA+R+ I+ E + L T++ +I E +
Sbjct: 104 ---KVGQKQKVLYVSGEESPAQIKLRAERLNISGE-IDLLPHTNVAEIEEVAVKGGYELI 159
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
I+DSIQT+YL + + G + QV+E +R +K+ N + L GHVTK G +AGPRV+E
Sbjct: 160 IVDSIQTMYLPELGSAPGTVTQVRESAGRFMRLSKEKNKTIFLIGHVTKDGYLAGPRVME 219
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLS--EQH 410
H+VD VLY+EGE+ +++RLLRSVKNRFGST+ELG+FEM GL+ VSNPS+ F+S QH
Sbjct: 220 HMVDVVLYLEGERHNTFRLLRSVKNRFGSTNELGIFEMVGEGLKEVSNPSEFFISLDRQH 279
Query: 411 SDSEFLAGLAVAVIMDGSRSFLIEIQALCV-SGSTVSRHV-NGIQASRADMIISVLMKQA 468
G AV V ++GSR FL+E+QAL +G R V G +R ++++VL K+
Sbjct: 280 D----CIGSAVVVSLEGSRPFLVEVQALVAPTGFGTPRRVATGFDYNRFVLLLAVLEKKL 335
Query: 469 GLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMV 528
G ++ + +LNVV G+ ++E A DL V A+ SSF E P+PN F+GEIGL GE+R V
Sbjct: 336 GFRMSVHDAYLNVVGGLKISEPAADLGVLLAVVSSFREEPLPNDGVFLGEIGLTGEIRPV 395
Query: 529 SRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFE-QMEFIGCKNLKEVINVVFT 581
++KR+ +LG++K +PK ++ F+ +ME NLKE I +F+
Sbjct: 396 LGVDKRLREAERLGFKKAFLPKQ------SINFKTEMEITTFANLKEAIFKLFS 443
>gi|270291669|ref|ZP_06197885.1| DNA repair protein RadA [Streptococcus sp. M143]
gi|270279754|gb|EFA25595.1| DNA repair protein RadA [Streptococcus sp. M143]
Length = 397
Score = 332 bits (850), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 179/388 (46%), Positives = 255/388 (65%), Gaps = 13/388 (3%)
Query: 195 EVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQ 254
E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ ++ V V+YVSGEES +Q
Sbjct: 20 EFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSQV------GTVLYVSGEESAQQ 73
Query: 255 IGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQ 314
I RA+R+ E +LY+ T+++ + +V+ + P LIIDSIQT+ ++G G + Q
Sbjct: 74 IKLRAERLGDIDSEFYLYAETNMQSVRVEVERIQPDFLIIDSIQTIMSPEISGVQGSVSQ 133
Query: 315 VKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRS 374
V+E T+ L++ AK NI + + GHVTK G +AGPR+LEH+VD VLY EGE+ ++R+LR+
Sbjct: 134 VREVTAELMQLAKTNNIAIFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGERHHTFRILRA 193
Query: 375 VKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIE 434
VKNRFGST+E+G+FEM GL V NPS++FL E+ + G ++ V M+G+R L E
Sbjct: 194 VKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGA---TGSSIVVTMEGTRPILAE 250
Query: 435 IQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAG 492
+QAL R G+ +RA +I++VL K+AGL LQ +L GV L E A
Sbjct: 251 VQALVTPTMFGNAKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAI 310
Query: 493 DLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSA 552
DLAVA AI SS+ + P F+GE+GL GE+R V+R+E+R++ AKLG+ K VPK++
Sbjct: 311 DLAVAVAIASSYKDKPTNPQECFVGELGLTGEIRRVNRIEQRINEAAKLGFTKIYVPKNS 370
Query: 553 EKSLATLGFEQMEFIGCKNLKEVINVVF 580
+ +++E IG ++EV+ VF
Sbjct: 371 LTGITPP--KEIEVIGVTTIQEVLKKVF 396
>gi|334116723|ref|ZP_08490815.1| DNA repair protein RadA [Microcoleus vaginatus FGP-2]
gi|333461543|gb|EGK90148.1| DNA repair protein RadA [Microcoleus vaginatus FGP-2]
Length = 511
Score = 332 bits (850), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 196/492 (39%), Positives = 287/492 (58%), Gaps = 61/492 (12%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPV--VQRTWL---------- 160
R ++C +CGY Q++G C +C+ K S E E P V R L
Sbjct: 5 RIQYICRECGYDSPQYFGRCPSCQ-----KWDSFDEQLEQPTAAVSRAGLTGVTTKTVGG 59
Query: 161 -PQKPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVG 219
P + QP +++ Q R P SG +G E+ RVLGGG+VPGSLVLIGG+PG+G
Sbjct: 60 SPPDKSKGQPRVSFRLSQISDQTQSRWP-SG-YG-ELDRVLGGGIVPGSLVLIGGEPGIG 116
Query: 220 KSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIAT------------- 266
KSTLLLQ+A ++A ++YVS EES +Q+ R+ R+ +A
Sbjct: 117 KSTLLLQVANMLA------RKDRILYVSAEESGQQVKLRSQRLGVANPVELSSNGGHKSG 170
Query: 267 --------------EELFLYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGL 312
E +L TD+E ++ +++ L P +IDSIQT+Y + + G +
Sbjct: 171 SNGEAKRDSEDNSAENFYLLPETDLEVVLRELEALKPNVAVIDSIQTIYFASLTSAPGSV 230
Query: 313 MQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLL 372
QV+ECTSAL++ AK+ NI + + GHVTK G +AGPRVLEH+VD VLY EG++F+S+RLL
Sbjct: 231 AQVRECTSALMQVAKRENITLFIVGHVTKDGALAGPRVLEHLVDTVLYFEGDRFASHRLL 290
Query: 373 RSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFL 432
RS+KNRFG+T E+GVFEM GL+ V+NPS++FL + EF G + V +G+R L
Sbjct: 291 RSMKNRFGATHEIGVFEMVANGLREVNNPSELFLGNR---DEFSPGTSTTVTCEGTRPIL 347
Query: 433 IEIQALCVSGS--TVSRHVNGIQASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTET 490
+EIQAL S + R G+ +R I++VL K+ G+ L + + L V G+ + E
Sbjct: 348 VEIQALVSPASFGSPRRTTTGVDNARLQQILAVLEKRVGIPLSKLDVILATVGGLKVDEP 407
Query: 491 AGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPK 550
A DLAVA A+ +SF + + +GE+GLGG++R VS++E R+ AKLG+++ I+PK
Sbjct: 408 AADLAVAIAVVASFRDRVVDARTVLLGEVGLGGQVRPVSQLELRLREAAKLGFKRAIIPK 467
Query: 551 SAEKSLATLGFE 562
+ + + LG E
Sbjct: 468 N--QPVPELGME 477
>gi|422824509|ref|ZP_16872696.1| DNA repair protein RadA [Streptococcus sanguinis SK405]
gi|422825411|ref|ZP_16873590.1| DNA repair protein RadA [Streptococcus sanguinis SK678]
gi|422856611|ref|ZP_16903267.1| DNA repair protein RadA [Streptococcus sanguinis SK1]
gi|422866442|ref|ZP_16913067.1| DNA repair protein RadA [Streptococcus sanguinis SK1058]
gi|422877406|ref|ZP_16923876.1| DNA repair protein RadA [Streptococcus sanguinis SK1056]
gi|324992558|gb|EGC24479.1| DNA repair protein RadA [Streptococcus sanguinis SK405]
gi|324995913|gb|EGC27824.1| DNA repair protein RadA [Streptococcus sanguinis SK678]
gi|327459970|gb|EGF06309.1| DNA repair protein RadA [Streptococcus sanguinis SK1]
gi|327488551|gb|EGF20351.1| DNA repair protein RadA [Streptococcus sanguinis SK1058]
gi|332360045|gb|EGJ37859.1| DNA repair protein RadA [Streptococcus sanguinis SK1056]
Length = 397
Score = 332 bits (850), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 181/390 (46%), Positives = 250/390 (64%), Gaps = 13/390 (3%)
Query: 194 NEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVE 253
+E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ L V+YVSGEES E
Sbjct: 19 DEFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVST------QLSHQGIVLYVSGEESAE 72
Query: 254 QIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLM 313
QI RA+R+ E +LY+ T++++I +++ + P LIIDSIQTV ++ G +
Sbjct: 73 QIKLRAERLGDIDSEFYLYAETNMQNIRTEIEKIKPDFLIIDSIQTVMSPEISSVQGSVS 132
Query: 314 QVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLR 373
QV+E T+ L++ AK NI + GH+TK G +AGPR LEH+VD VLY EGE+ ++R+LR
Sbjct: 133 QVREVTAELMQLAKTNNIATFIVGHMTKEGTLAGPRTLEHMVDTVLYFEGERQHTFRILR 192
Query: 374 SVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLI 433
+VKNRFGST+E+G+FEM GL V NPS++FL E+ + G ++ V M+G+R L
Sbjct: 193 AVKNRFGSTNEIGIFEMQSGGLVEVVNPSEVFLEERLDGA---TGSSIVVTMEGTRPILA 249
Query: 434 EIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETA 491
E+QAL R G+ +RA +I++VL K+AGL LQ +L GV L E A
Sbjct: 250 EVQALVTPTMFGNAKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPA 309
Query: 492 GDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKS 551
DLAVA AI SS+ + P FIGEIGL GE+R V+R+E+R++ AKLG+ K PK+
Sbjct: 310 IDLAVAVAIASSYKDLPTNPQECFIGEIGLTGEIRRVNRIEQRINEAAKLGFTKVYAPKN 369
Query: 552 AEKSLATLGFEQMEFIGCKNLKEVINVVFT 581
A L + ++ IG + EV+ VF+
Sbjct: 370 ALNGLKVP--DNIQVIGVTTIGEVLKKVFS 397
>gi|302037013|ref|YP_003797335.1| DNA recombination protein RadA [Candidatus Nitrospira defluvii]
gi|300605077|emb|CBK41410.1| DNA recombination protein RadA [Candidatus Nitrospira defluvii]
Length = 458
Score = 332 bits (850), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 194/485 (40%), Positives = 293/485 (60%), Gaps = 41/485 (8%)
Query: 107 KKGKANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEE 166
+ G +T + C CG+ +W G C C T+K + +G R +P+
Sbjct: 3 RVGMKAKTTFHCQACGHQALRWLGRCPDCGGWNTLKEERLPAAPKG----RQGMPKTAMA 58
Query: 167 V-QPVRLLEV------NKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVG 219
V P+ +E+ + GM + D RVLGGG+VPGS++LIGGDPG+G
Sbjct: 59 VATPISDIEIVGEPRHSTGMGEFD--------------RVLGGGVVPGSVMLIGGDPGIG 104
Query: 220 KSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIED 279
K+TLLLQ ++A + V+YVSGEES QI R R+ I + L + T +E
Sbjct: 105 KTTLLLQALPLLAAPGE-----QVLYVSGEESPRQIKMRGQRLGIDGKHLLILGETSLEQ 159
Query: 280 IVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHV 339
I++ +Q + P A+++DSIQTVY + + G + QV+E L+ FAK++N+PV + GHV
Sbjct: 160 ILKAIQEIQPAAVVVDSIQTVYTEQLTSAPGSISQVQEVAGQLMWFAKRSNVPVFIIGHV 219
Query: 340 TKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVS 399
TK G IAGPR+LEHIVD VLY EG+K S+R+LR+VKNRFGST+E+GVFEM GL+ VS
Sbjct: 220 TKEGAIAGPRLLEHIVDTVLYFEGDKSHSFRILRAVKNRFGSTNEIGVFEMKDGGLEEVS 279
Query: 400 NPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTV---SRHVNGIQASR 456
NPS++FL+E+ S G V ++G+R L+E+QAL VSG+ R NG++ +R
Sbjct: 280 NPSELFLAERPQRS---TGSVVVSSLEGTRPILVELQAL-VSGTNYPMPKRMANGVEPNR 335
Query: 457 ADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFI 516
++++V+ K+ G+ L +++NVV G+ + E A DL + AA+ SS E PI +
Sbjct: 336 LSLLLAVMEKRLGMHLSGQDVYVNVVGGIHIDEPAIDLGIVAAVTSSLRESPIDFTTLVM 395
Query: 517 GEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATL-GFEQMEFIGCKNLKEV 575
GE+GLGGE+R +S+ E R+ AK+G+++C++P E+++A L E +E IG + +
Sbjct: 396 GEVGLGGEVRAISQAELRIREAAKMGFKRCLLP---ERNVAKLEPVEGIELIGIHEVGDA 452
Query: 576 INVVF 580
++ V
Sbjct: 453 LDAVL 457
>gi|296840923|ref|ZP_06899435.1| DNA repair protein RadA [Neisseria polysaccharea ATCC 43768]
gi|296839587|gb|EFH23525.1| DNA repair protein RadA [Neisseria polysaccharea ATCC 43768]
Length = 464
Score = 332 bits (850), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 192/476 (40%), Positives = 279/476 (58%), Gaps = 32/476 (6%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKP--EEV 167
K +T + C+ CG T +W G C C T++ A + Q +W + +
Sbjct: 8 KTLKTLYQCTGCGGTSPKWQGKCPHCGEWNTLQESLAAPDPKNARFQ-SWAADTSTVQSL 66
Query: 168 QPVRLLEVNK---GMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLL 224
V EV + GM +LD RVLGGGLV G+++L+GGDPG+GKSTLL
Sbjct: 67 STVTATEVPRNPTGMGELD--------------RVLGGGLVDGAVILLGGDPGIGKSTLL 112
Query: 225 LQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKV 284
LQ A +A + V+YVSGEES +Q+ RA R+ + T+ + L + +E I +
Sbjct: 113 LQTIAKMA------QSRKVLYVSGEESAQQVALRAQRLELPTDGVNLLAEIRMEAIQAAL 166
Query: 285 QPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGD 344
+ P ++IDSIQT+Y + + G + QV+EC + L R AK+ I ++L GHVTK G
Sbjct: 167 KQHQPEVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRMAKQMGIAMILVGHVTKDGA 226
Query: 345 IAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKI 404
IAGPRVLEH+VD VLY EG++ S+YR++R++KNRFG+ +ELGVF M++ GL+ VSNPS I
Sbjct: 227 IAGPRVLEHMVDTVLYFEGDQHSNYRMIRAIKNRFGAANELGVFAMTENGLKGVSNPSAI 286
Query: 405 FLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIIS 462
FL+ D+ G V V +GSR L+EIQAL G T R G++ +R M+++
Sbjct: 287 FLASYRDDT---PGSCVLVTQEGSRPLLVEIQALVDDAHGFTPKRLTVGLEQNRLAMLLA 343
Query: 463 VLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLG 522
VL + G+ + +FLN V GV + E A DLAV A+ SSF P+P GEIGL
Sbjct: 344 VLNRHGGIACFDQDVFLNAVGGVKIGEPAADLAVILAMLSSFRNRPMPEKTVVFGEIGLS 403
Query: 523 GELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINV 578
GE+R V+R ++R+ KLG+++ IVPK+ A F +++ G +L+E I++
Sbjct: 404 GEVRPVARGQERLKEAEKLGFKRAIVPKANMPRNAK-EFPKLKIYGVSSLQEAIDI 458
>gi|225855812|ref|YP_002737323.1| DNA repair protein RadA [Streptococcus pneumoniae P1031]
gi|410475539|ref|YP_006742298.1| DNA repair protein RadA [Streptococcus pneumoniae gamPNI0373]
gi|444388267|ref|ZP_21186256.1| DNA repair protein RadA [Streptococcus pneumoniae PCS125219]
gi|444390811|ref|ZP_21188726.1| DNA repair protein RadA [Streptococcus pneumoniae PCS70012]
gi|444393157|ref|ZP_21190814.1| DNA repair protein RadA [Streptococcus pneumoniae PCS81218]
gi|444395647|ref|ZP_21193189.1| DNA repair protein RadA [Streptococcus pneumoniae PNI0002]
gi|444396496|ref|ZP_21193983.1| DNA repair protein RadA [Streptococcus pneumoniae PNI0006]
gi|444399040|ref|ZP_21196513.1| DNA repair protein RadA [Streptococcus pneumoniae PNI0007]
gi|444402620|ref|ZP_21199779.1| DNA repair protein RadA [Streptococcus pneumoniae PNI0008]
gi|444404299|ref|ZP_21201258.1| DNA repair protein RadA [Streptococcus pneumoniae PNI0009]
gi|444406856|ref|ZP_21203525.1| DNA repair protein RadA [Streptococcus pneumoniae PNI0010]
gi|444409275|ref|ZP_21205871.1| DNA repair protein RadA [Streptococcus pneumoniae PNI0076]
gi|444413460|ref|ZP_21209776.1| DNA repair protein RadA [Streptococcus pneumoniae PNI0153]
gi|444416304|ref|ZP_21212460.1| DNA repair protein RadA [Streptococcus pneumoniae PNI0199]
gi|444417074|ref|ZP_21213134.1| DNA repair protein RadA [Streptococcus pneumoniae PNI0360]
gi|444419364|ref|ZP_21215235.1| DNA repair protein RadA [Streptococcus pneumoniae PNI0427]
gi|444422639|ref|ZP_21218287.1| DNA repair protein RadA [Streptococcus pneumoniae PNI0446]
gi|225725920|gb|ACO21772.1| DNA repair protein RadA [Streptococcus pneumoniae P1031]
gi|406368484|gb|AFS42174.1| DNA repair protein RadA [Streptococcus pneumoniae gamPNI0373]
gi|444250188|gb|ELU56671.1| DNA repair protein RadA [Streptococcus pneumoniae PCS125219]
gi|444257274|gb|ELU63612.1| DNA repair protein RadA [Streptococcus pneumoniae PCS70012]
gi|444257546|gb|ELU63880.1| DNA repair protein RadA [Streptococcus pneumoniae PNI0002]
gi|444261546|gb|ELU67846.1| DNA repair protein RadA [Streptococcus pneumoniae PCS81218]
gi|444261727|gb|ELU68025.1| DNA repair protein RadA [Streptococcus pneumoniae PNI0006]
gi|444266206|gb|ELU72174.1| DNA repair protein RadA [Streptococcus pneumoniae PNI0008]
gi|444269394|gb|ELU75202.1| DNA repair protein RadA [Streptococcus pneumoniae PNI0007]
gi|444271881|gb|ELU77625.1| DNA repair protein RadA [Streptococcus pneumoniae PNI0010]
gi|444273619|gb|ELU79292.1| DNA repair protein RadA [Streptococcus pneumoniae PNI0153]
gi|444277226|gb|ELU82744.1| DNA repair protein RadA [Streptococcus pneumoniae PNI0009]
gi|444277734|gb|ELU83234.1| DNA repair protein RadA [Streptococcus pneumoniae PNI0199]
gi|444279795|gb|ELU85180.1| DNA repair protein RadA [Streptococcus pneumoniae PNI0076]
gi|444284509|gb|ELU89640.1| DNA repair protein RadA [Streptococcus pneumoniae PNI0360]
gi|444287097|gb|ELU92040.1| DNA repair protein RadA [Streptococcus pneumoniae PNI0427]
gi|444287993|gb|ELU92897.1| DNA repair protein RadA [Streptococcus pneumoniae PNI0446]
Length = 420
Score = 332 bits (850), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 184/421 (43%), Positives = 267/421 (63%), Gaps = 26/421 (6%)
Query: 163 KPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKST 222
KP ++ V + VN+ +++ E RVLGGG+VPGSLVLIGGDPG+GKST
Sbjct: 22 KPMKLAEVTSINVNRTKTEME-----------EFNRVLGGGVVPGSLVLIGGDPGIGKST 70
Query: 223 LLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVE 282
LLLQ++ ++ V V+YVSGEES +QI RA+R+ E +LY+ T+++ +
Sbjct: 71 LLLQVSTQLSQV------GTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSVRA 124
Query: 283 KVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKS 342
+V+ + P IIDSIQT+ ++G G + QV+E T+ L++ AK NI + + GHVTK
Sbjct: 125 EVERIQPDFFIIDSIQTIMSPEISGVQGSVSQVREVTAELMQLAKTNNIAIFIVGHVTKE 184
Query: 343 GDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPS 402
G +AGPR+LEH+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS
Sbjct: 185 GTLAGPRMLEHMVDTVLYFEGERHHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPS 244
Query: 403 KIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMI 460
++FL E+ + G ++ V M+G+R L E+QAL R G+ +RA +I
Sbjct: 245 QVFLEERLDGA---TGSSIVVTMEGTRPILAEVQALVTPTMFGNAKRTTTGLDFNRASLI 301
Query: 461 ISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIG 520
++VL K+AGL LQ +L GV L E A DLAVA AI SS+ + P F+GE+G
Sbjct: 302 MAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKPTNPQECFVGELG 361
Query: 521 LGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGF-EQMEFIGCKNLKEVINVV 579
L GE+R V+R+E+R++ AKLG+ K VPK+ SL + ++++ IG ++EV+ V
Sbjct: 362 LTGEIRRVNRIEQRINEAAKLGFTKIYVPKN---SLTGITLPKEIQVIGVTTIQEVLKKV 418
Query: 580 F 580
F
Sbjct: 419 F 419
>gi|401682687|ref|ZP_10814577.1| DNA repair protein RadA [Streptococcus sp. AS14]
gi|422872399|ref|ZP_16918892.1| DNA repair protein RadA [Streptococcus sanguinis SK1087]
gi|328944649|gb|EGG38810.1| DNA repair protein RadA [Streptococcus sanguinis SK1087]
gi|400183927|gb|EJO18174.1| DNA repair protein RadA [Streptococcus sp. AS14]
Length = 397
Score = 332 bits (850), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 180/390 (46%), Positives = 250/390 (64%), Gaps = 13/390 (3%)
Query: 194 NEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVE 253
+E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ L V+YVSGEES E
Sbjct: 19 DEFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVST------QLSHQGTVLYVSGEESAE 72
Query: 254 QIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLM 313
QI RA+R+ E +LY+ T++++I +++ + P LIIDSIQTV ++ G +
Sbjct: 73 QIKLRAERLGDIDSEFYLYAETNMQNIRTEIEKIKPNFLIIDSIQTVMSPEISSVQGSVS 132
Query: 314 QVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLR 373
QV+E T+ L++ AK NI + GH+TK G +AGPR LEH+VD VLY EGE+ ++R+LR
Sbjct: 133 QVREVTAELMQLAKTNNIATFIVGHMTKEGTLAGPRTLEHMVDTVLYFEGERQHTFRILR 192
Query: 374 SVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLI 433
+VKNRFGST+E+G+FEM GL V NPS++FL E+ + G ++ V M+G+R L
Sbjct: 193 AVKNRFGSTNEIGIFEMQSGGLVEVVNPSEVFLEERLDGA---TGSSIVVTMEGTRPILA 249
Query: 434 EIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETA 491
E+QAL R G+ +RA +I++VL K+AGL LQ +L GV L E A
Sbjct: 250 EVQALVTPTMFGNAKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPA 309
Query: 492 GDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKS 551
DLAVA AI SS+ + P FIGEIGL GE+R V+R+E+R++ AKLG+ K PK+
Sbjct: 310 IDLAVAVAIASSYKDLPTNPQECFIGEIGLTGEIRRVNRIEQRINEAAKLGFTKVYAPKN 369
Query: 552 AEKSLATLGFEQMEFIGCKNLKEVINVVFT 581
+ L + ++ IG + EV+ VF+
Sbjct: 370 SLNGLKVP--DNIQVIGVTTIGEVLKKVFS 397
>gi|256852084|ref|ZP_05557471.1| DNA repair protein RadA [Lactobacillus jensenii 27-2-CHN]
gi|260661346|ref|ZP_05862259.1| DNA repair protein RadA [Lactobacillus jensenii 115-3-CHN]
gi|297205041|ref|ZP_06922437.1| DNA repair protein RadA [Lactobacillus jensenii JV-V16]
gi|256615496|gb|EEU20686.1| DNA repair protein RadA [Lactobacillus jensenii 27-2-CHN]
gi|260547801|gb|EEX23778.1| DNA repair protein RadA [Lactobacillus jensenii 115-3-CHN]
gi|297149619|gb|EFH29916.1| DNA repair protein RadA [Lactobacillus jensenii JV-V16]
Length = 458
Score = 332 bits (850), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 185/474 (39%), Positives = 277/474 (58%), Gaps = 27/474 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T + C CGY + G C C S ++ E V++ Q P + P
Sbjct: 5 QTRYKCRSCGYISASYLGRCPNCGSWNQFEK-------EVQEVRKASTKQTPSRLMPTTG 57
Query: 173 LE----VNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMA 228
L + K + + RIP +E+ RVLGGG+V GSLVLIGGDPG+GKSTL+LQ+
Sbjct: 58 LHEPVTLEKVKAEKETRIPTKF---SELNRVLGGGIVTGSLVLIGGDPGIGKSTLMLQIM 114
Query: 229 AIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLS 288
+ +A H V+YVSGEES QI RADR+ + ++LY T++ +I +++ L
Sbjct: 115 STLASEHK------VLYVSGEESASQIKLRADRLGVGNSGMYLYPETNMSNIRDQISDLK 168
Query: 289 PRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGP 348
P ++IDSIQT+ + G QV+E TS L+ AK I V + GHVTK G IAGP
Sbjct: 169 PDFVVIDSIQTMNEPSLDSMVGSAAQVREVTSELMHIAKIDQITVFIIGHVTKEGAIAGP 228
Query: 349 RVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSE 408
++LEH+VD VLY EG++ +YR+L SVKNRFG+ +E+G+FEM GL+ V+NPS IFL E
Sbjct: 229 KILEHMVDTVLYFEGDEHHAYRILHSVKNRFGAANEIGMFEMENSGLKEVTNPSSIFLDE 288
Query: 409 QHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMK 466
+ +S G V V ++G+R L E+QAL + R +GI ++A ++++VL K
Sbjct: 289 RLPNS---TGSCVVVSLEGTRPILAEVQALVAPTAFGYAKRTTSGIDYNKAALLLAVLEK 345
Query: 467 QAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELR 526
+ L LQ +L G+ LTE A DLA+ AI SS+ + IP+ F+GE+GL GE+R
Sbjct: 346 RGNLMLQNQDAYLTTTGGIKLTEPAIDLAIVMAIGSSYKDMEIPSEDCFVGEVGLTGEVR 405
Query: 527 MVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
V+++E R++ K+G+++ +PK K A+ ++E + + + + +VF
Sbjct: 406 RVNKIESRIAEAEKIGFKRIFIPKFNMK--ASFSKRKIEVVPVSTVAQALKLVF 457
>gi|340353959|ref|ZP_08676754.1| DNA repair protein RadA [Prevotella pallens ATCC 700821]
gi|339607879|gb|EGQ12802.1| DNA repair protein RadA [Prevotella pallens ATCC 700821]
Length = 459
Score = 332 bits (850), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 194/452 (42%), Positives = 274/452 (60%), Gaps = 26/452 (5%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRY----SAGESDEGPVVQRTWLPQKPEEV 167
+R +VC +CG +W G C C T K+ G S V T+ K
Sbjct: 4 DRIAYVCDNCGQESAKWIGKCPNCGEWNTFKQIRIAPDLGVSSAKAFVSNTFGVAKQNVP 63
Query: 168 QPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQM 227
QP+R + ++ +D + NE+ RVLGGGLV GS+VLIGG+PG+GKSTL LQ
Sbjct: 64 QPLRDVSSTDEIR-IDMK-------DNELNRVLGGGLVVGSMVLIGGEPGIGKSTLTLQT 115
Query: 228 AAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMM-IATEELFLYSSTDIEDIVEKVQP 286
V+YVSGEES +QI RA R+ + + S T IE I ++
Sbjct: 116 LLS--------TDRRVLYVSGEESPQQIKMRALRISETIPNNIVILSETSIEKIFNSIKD 167
Query: 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIA 346
+ P L+IDSIQTV VA SAG + Q++E +ALL+ AK +NIPV+L GH+ K G IA
Sbjct: 168 VKPELLVIDSIQTVATETVASSAGSISQIRESAAALLQLAKSSNIPVILIGHINKEGSIA 227
Query: 347 GPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFL 406
GP+VLEHIVD VL EG++ YR+LRS+KNRFGST ELG++EM Q GL+ V+NPS++ L
Sbjct: 228 GPKVLEHIVDTVLQFEGDQHYMYRILRSIKNRFGSTSELGIYEMRQNGLRPVNNPSELLL 287
Query: 407 SEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVL 464
++ D L+G+A++ ++G R FL+E QAL S + T R G R +M+++VL
Sbjct: 288 TDTPGD---LSGVAISSAIEGVRPFLVETQALVSSAAYGTPQRSATGFDQRRLNMLLAVL 344
Query: 465 MKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGE 524
K+ G KL + +FLN+ G+ +T+ A DL+V AA+ SS ++ PI +G GE+GL GE
Sbjct: 345 EKRVGFKLMQKDVFLNIAGGLRITDMAMDLSVIAAVLSSNVDTPIESGWCMAGEVGLSGE 404
Query: 525 LRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSL 556
+R VSR+E+R++ KLG+ IVPK+ ++L
Sbjct: 405 VRPVSRIEQRIAEAEKLGFSNIIVPKNNAQAL 436
>gi|302670239|ref|YP_003830199.1| DNA repair protein RadA [Butyrivibrio proteoclasticus B316]
gi|302394712|gb|ADL33617.1| DNA repair protein RadA [Butyrivibrio proteoclasticus B316]
Length = 463
Score = 332 bits (850), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 188/470 (40%), Positives = 279/470 (59%), Gaps = 20/470 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T + C CGY +W G C C T + + + Q + L E +PV L
Sbjct: 11 KTVFFCQSCGYESSKWMGQCPGCREWNTFVEETVKPASKASGKQSSAL-STGEYNKPVSL 69
Query: 173 LEVN-KGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAII 231
E+ + ++ D I E RVLGGGLV GSL+L+GGDPG+GKSTLLLQ+A +
Sbjct: 70 SEIEMRDEERADTHI-------GEFNRVLGGGLVRGSLILVGGDPGIGKSTLLLQVAGNL 122
Query: 232 ADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRA 291
+ G+ V+Y+SGEES+ QI RA+R+ +E L T++ ++ E + P
Sbjct: 123 S-----GDKRDVLYISGEESLRQIKLRANRLGKFSESLKFLCETNLSNVEEAIVRTKPEV 177
Query: 292 LIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVL 351
+IIDSIQT+ V+ + G + QV+E T+ L+R AK NI V + GHVTK G +AGPRVL
Sbjct: 178 IIIDSIQTMANESVSSAPGSVSQVRESTAVLMRIAKSMNITVFIVGHVTKEGQVAGPRVL 237
Query: 352 EHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHS 411
EH+VD VLY EG++ +SYR+LR+VKNRFGST+E+GVFEM + GL V+NPS+ L +
Sbjct: 238 EHMVDTVLYFEGDRHASYRILRAVKNRFGSTNEIGVFEMQEKGLAEVTNPSEFMLDGRPE 297
Query: 412 DSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMKQAG 469
++ +G V ++G+R LIE+QAL + R NG +R +++++VL K+ G
Sbjct: 298 NA---SGSVVTCSVEGTRPILIEVQALVTHTNFGFPRRQANGTDYNRVNLLMAVLEKRIG 354
Query: 470 LKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVS 529
L+L + ++N+ G+ + E + DL + AI SSF PI + + GE+GL GE+R VS
Sbjct: 355 LQLGDFDAYVNLAGGMKVAEPSLDLGICLAIISSFKNKPISDDVIAFGEVGLSGEVRSVS 414
Query: 530 RMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVV 579
E RV KLG++ CIVPK+ E L + +E IG ++ + + ++
Sbjct: 415 MGESRVMEAQKLGFKTCIVPKALEDKLKK-SSKGIEIIGVASVSDAMKLI 463
>gi|302879075|ref|YP_003847639.1| DNA repair protein RadA [Gallionella capsiferriformans ES-2]
gi|302581864|gb|ADL55875.1| DNA repair protein RadA [Gallionella capsiferriformans ES-2]
Length = 452
Score = 332 bits (850), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 190/471 (40%), Positives = 270/471 (57%), Gaps = 32/471 (6%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEG----PVVQRTWLPQKPEEVQ 168
+T + C++CG +W G C C T+ A + +G + T Q EV
Sbjct: 5 KTIYSCTECGGQTAKWQGQCPHCMEWNTLVESVAETASKGVNRFSALASTSRVQMLSEVA 64
Query: 169 PVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMA 228
+ + G+++ D RVLGGGLV G++VLIGGDPG+GKSTLLLQ+
Sbjct: 65 AEEMPRIPTGIEEFD--------------RVLGGGLVSGAVVLIGGDPGIGKSTLLLQVL 110
Query: 229 AIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLS 288
A ++ H+ +YVSGEES +QI RA R+ + + L L +E I +
Sbjct: 111 AHLSMQHN------TLYVSGEESAQQIALRAKRLALDAQNLRLLPEIQLEKIQATIAANK 164
Query: 289 PRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGP 348
P ++IDSIQTVY + + G + QV+EC + L R AK NI ++L GHVTK G +AGP
Sbjct: 165 PSVVVIDSIQTVYSEQLTSAPGSVAQVRECAAQLTRIAKSQNITIILVGHVTKEGALAGP 224
Query: 349 RVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSE 408
RVLEHIVD VLY EG+ SS+RL+R+ KNRFG+ +ELGVF M++ GL+ VSNPS +FLS
Sbjct: 225 RVLEHIVDTVLYFEGDTHSSFRLIRAFKNRFGAVNELGVFAMTEKGLREVSNPSAMFLS- 283
Query: 409 QHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVLMK 466
QH +AG V V +GSR L+EIQAL V R G++ +R M+++VL +
Sbjct: 284 QHGQQ--VAGSCVMVTQEGSRPLLVEIQALLDEAHSPNVKRLSLGLEQNRLAMLLAVLHR 341
Query: 467 QAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELR 526
AG+ + +F+N V GV +TE DLAV A+ SS P+P + GE+GL GE+R
Sbjct: 342 HAGIACFDQDVFINAVGGVKITEPGADLAVILAMVSSLRNQPLPEKLVVFGEVGLAGEVR 401
Query: 527 MVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVIN 577
V R ++R+ AKLG+ I+PK+ G ME I + +++ ++
Sbjct: 402 PVQRGQERLREAAKLGFTSAIIPKANAPKHPIPG---MEIIAVERVEQAVD 449
>gi|405761761|ref|YP_006702357.1| DNA repair protein [Streptococcus pneumoniae SPNA45]
gi|404278650|emb|CCM09281.1| putative DNA repair protein [Streptococcus pneumoniae SPNA45]
Length = 397
Score = 332 bits (850), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 180/389 (46%), Positives = 255/389 (65%), Gaps = 15/389 (3%)
Query: 195 EVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQ 254
E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ L + V+YVSGEES +Q
Sbjct: 20 EFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSI------QLSQVGTVLYVSGEESAQQ 73
Query: 255 IGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQ 314
I RA+R+ E +LY+ T+++ + +V+ + P LIIDSIQT+ ++G G + Q
Sbjct: 74 IKLRAERLGDIDSEFYLYAETNMQSVRAEVERIQPHFLIIDSIQTIMSPEISGVQGSVSQ 133
Query: 315 VKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRS 374
V+E T+ L++ AK NI + + GHVTK G +AGPR+LEH+VD VLY EGE+ ++R+LR+
Sbjct: 134 VREVTAELMQLAKTNNIAIFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGERHHTFRILRA 193
Query: 375 VKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIE 434
VKNRFGST+E+G+FEM GL V NPS++FL E+ + G ++ V M+G+R L E
Sbjct: 194 VKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGA---TGSSIVVTMEGTRPILAE 250
Query: 435 IQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAG 492
+QAL R G+ +RA +I++VL K+AGL LQ +L GV L E A
Sbjct: 251 VQALVTPTMFGNAKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAI 310
Query: 493 DLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSA 552
DLAVA AI SS+ + P F+GE+GL GE+R V+R+E+R++ AKLG+ K VPK+
Sbjct: 311 DLAVAVAIASSYKDKPTNPQECFVGELGLTGEIRRVNRIEQRINEAAKLGFTKIYVPKN- 369
Query: 553 EKSLATLGF-EQMEFIGCKNLKEVINVVF 580
SL + ++++ IG ++EV+ VF
Sbjct: 370 --SLTGITLPKEIQVIGVTTIQEVLKKVF 396
>gi|418966983|ref|ZP_13518682.1| DNA repair protein RadA [Streptococcus mitis SK616]
gi|383345866|gb|EID23952.1| DNA repair protein RadA [Streptococcus mitis SK616]
Length = 407
Score = 332 bits (850), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 182/421 (43%), Positives = 267/421 (63%), Gaps = 24/421 (5%)
Query: 163 KPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKST 222
KP ++ V + VN+ +++ E RVLGGG+VPGSLVLIGGDPG+GKST
Sbjct: 9 KPMKLAEVTSINVNRTKTEME-----------EFNRVLGGGVVPGSLVLIGGDPGIGKST 57
Query: 223 LLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVE 282
LLLQ++ ++ V V+YVSGEES +QI RA+R+ E +LY+ T+++ +
Sbjct: 58 LLLQVSTQLSQV------GTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSVRA 111
Query: 283 KVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKS 342
+V+ + P LIIDSIQT+ ++G G + QV+E T+ L++ AK NI + + GHVTK
Sbjct: 112 EVERIQPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELMQLAKTNNIAIFIVGHVTKE 171
Query: 343 GDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPS 402
G +AGPR+LEH+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS
Sbjct: 172 GTLAGPRMLEHMVDTVLYFEGERHHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPS 231
Query: 403 KIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMI 460
++FL E+ + G ++ V M+G+R L E+QAL R G+ +RA +I
Sbjct: 232 QVFLEERLDGA---TGSSIVVTMEGTRPILAEVQALVTPTMFGNAKRTTTGLDFNRASLI 288
Query: 461 ISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIG 520
++VL K+AGL LQ +L GV L E A DLAVA AI SS+ + P F+GE+G
Sbjct: 289 MAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKPTNPQECFVGELG 348
Query: 521 LGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
L GE+R V+R+E+R++ AKLG+ K VPK++ + ++++ IG ++EV+ F
Sbjct: 349 LTGEIRRVNRIEQRINEAAKLGFTKIYVPKNSLTGITPP--KEIQVIGVTTIQEVLKKAF 406
Query: 581 T 581
+
Sbjct: 407 S 407
>gi|419522239|ref|ZP_14061824.1| DNA repair protein RadA [Streptococcus pneumoniae GA13723]
gi|421267258|ref|ZP_15718133.1| DNA repair protein RadA [Streptococcus pneumoniae SPAR95]
gi|421295314|ref|ZP_15746029.1| DNA repair protein RadA [Streptococcus pneumoniae GA58581]
gi|379560410|gb|EHZ25433.1| DNA repair protein RadA [Streptococcus pneumoniae GA13723]
gi|395872347|gb|EJG83445.1| DNA repair protein RadA [Streptococcus pneumoniae SPAR95]
gi|395897383|gb|EJH08342.1| DNA repair protein RadA [Streptococcus pneumoniae GA58581]
Length = 397
Score = 332 bits (850), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 179/389 (46%), Positives = 256/389 (65%), Gaps = 15/389 (3%)
Query: 195 EVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQ 254
E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ ++ V V+Y+SGEES +Q
Sbjct: 20 EFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSQV------GTVLYISGEESAQQ 73
Query: 255 IGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQ 314
I RA+R+ E +LY+ T+++ + +V+ + P LIIDSIQT+ ++G G + Q
Sbjct: 74 IKLRAERLGDIDSEFYLYAETNMQSVRAEVERIQPDFLIIDSIQTIMSPEISGVQGSVSQ 133
Query: 315 VKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRS 374
V+E T+ L++ AK NI + + GHVTK G +AGPR+LEH+VD VLY EGE+ ++R+LR+
Sbjct: 134 VREVTAELMQLAKTNNIAIFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGERHHTFRILRA 193
Query: 375 VKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIE 434
VKNRFGST+E+G+FEM GL V NPS++FL E+ + G ++ V M+G+R L E
Sbjct: 194 VKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGA---TGSSIVVTMEGTRPILAE 250
Query: 435 IQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAG 492
+QAL R G+ +RA +I++VL K+AGL LQ +L GV L E A
Sbjct: 251 VQALVTPTMFGNAKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAI 310
Query: 493 DLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSA 552
DLAVA AI SS+ + P F+GE+GL GE+R V+R+E+R++ AKLG+ K VPK+
Sbjct: 311 DLAVAVAIASSYKDKPTNPQECFVGELGLTGEIRRVNRIEQRINEAAKLGFTKIYVPKN- 369
Query: 553 EKSLATLGF-EQMEFIGCKNLKEVINVVF 580
SL + ++++ IG ++EV+ VF
Sbjct: 370 --SLTGITLPKEIQVIGVTTIQEVLKKVF 396
>gi|3493141|gb|AAC33293.1| RadA homolog [Listeria monocytogenes]
Length = 457
Score = 332 bits (850), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 184/449 (40%), Positives = 271/449 (60%), Gaps = 24/449 (5%)
Query: 109 GKANRTN-WVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEV 167
KA RT +VC CGY +W G C C M + T P K +
Sbjct: 2 AKAKRTTKFVCQACGYESAKWMGKCPNCNEWNQMVKALEPSKKSRSAFNHTGEPSKATPI 61
Query: 168 QPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQM 227
+ ++ K++ +P E+ RVLGG +VPGS+VL+GGDPG+GKSTLLLQ+
Sbjct: 62 TQI----ASETEKRVQTSMP-------ELNRVLGGSVVPGSMVLVGGDPGIGKSTLLLQV 110
Query: 228 AAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPL 287
+A + + V+Y+SGEES+++ RA+R+ ++ + L++Y+ T++E + E + +
Sbjct: 111 SAQLTLTN-----KKVLYISGEESIKRTKLRAERLQVSGDNLYVYAETNLEAVQETIDFV 165
Query: 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAG 347
P ++IDSIQTVY V +AG + QV+EC++ L+R AK NI + + GHVTK G IAG
Sbjct: 166 KPDFVVIDSIQTVYHPDVTSAAGSVSQVRECSATLMRIAKMQNIAIFIVGHVTKEGAIAG 225
Query: 348 PRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLS 407
+LEH+VD VLY EGE+ +YR+LR+VKN FGS E+G+FEM +GL V+NPS++FL
Sbjct: 226 APLLEHMVDTVLYFEGERPHAYRILRAVKNPFGSPIEMGIFEMRDVGLVEVANPSEVFLE 285
Query: 408 EQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS---TVSRHVNGIQASRADMIISVL 464
E+ E + V M+G+R L+EIQAL VS + R GI ++ +I++VL
Sbjct: 286 ERL---ESASRSTVVASMEGTRPVLVEIQAL-VSPTMFGNAKRMATGIDYNKVSLIMAVL 341
Query: 465 MKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGE 524
K+ GL LQ +L GV L E A DLAVA ++ SS+ + P + FIGE+GL GE
Sbjct: 342 EKRVGLMLQNQDAYLKAAGGVKLDEPAVDLAVAVSVASSYRDKPTRSTDCFIGELGLTGE 401
Query: 525 LRMVSRMEKRVSTVAKLGYRKCIVPKSAE 553
+ V+R+E+RV AKLG+++ +PK+ E
Sbjct: 402 ICRVARIEQRVQEAAKLGFKRIFIPKNNE 430
>gi|375013297|ref|YP_004990285.1| DNA repair protein RadA [Owenweeksia hongkongensis DSM 17368]
gi|359349221|gb|AEV33640.1| DNA repair protein RadA [Owenweeksia hongkongensis DSM 17368]
Length = 459
Score = 332 bits (850), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 179/480 (37%), Positives = 284/480 (59%), Gaps = 31/480 (6%)
Query: 109 GKANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQK----- 163
K +T + C +CG +W G C +C T+ E+ V PQ+
Sbjct: 2 AKKPKTTYYCQNCGTQHSKWMGQCNSCGEWNTIVE-EVLETTASKAVSWKSSPQRGSSSI 60
Query: 164 -PEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKST 222
P +V+ +R +E + ++ + NE+ RV+GGG+V GS+ LIGG+PG+GKST
Sbjct: 61 APSKVKSIRDIETQQSVR--------TTTNDNELDRVMGGGMVDGSVTLIGGEPGIGKST 112
Query: 223 LLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVE 282
L+LQ+ LG +Y+SGEES +Q+ RA R+ I ++ ++ ++T ++I
Sbjct: 113 LMLQVV--------LGLNQKCLYISGEESEQQVQLRAKRIGIKNDDCYILTATSTQEIFR 164
Query: 283 KVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKS 342
+++ P+ +I+DSIQT++ + + S G + Q+++C + L++FAK+T+ P+ L GH+TK
Sbjct: 165 QIELNEPKVVIVDSIQTLHSQLIESSPGSVSQIRQCAAELIQFAKETDTPLFLIGHITKD 224
Query: 343 GDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPS 402
G+IAGP++LEH+VD VL EG++ YRLLR+ KNRFGST ELG++EM GL+ VSNPS
Sbjct: 225 GNIAGPKILEHMVDTVLQFEGDRHHVYRLLRANKNRFGSTHELGIYEMVGEGLREVSNPS 284
Query: 403 KIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMI 460
+I +S++ +D L+G AVA ++G R LIEIQAL + T R G R +M+
Sbjct: 285 EILISKRDAD---LSGNAVAATLEGIRPMLIEIQALVSTAVYGTPQRSTTGYDTRRLNML 341
Query: 461 ISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIG 520
++VL K+ G L +FLN+ G+ + + A DLAV AAI SS + +P I F E+G
Sbjct: 342 LAVLEKRCGFHLGSKDVFLNITGGIRVDDPAIDLAVVAAILSSNEDIALPPKICFAAEVG 401
Query: 521 LGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
L GE+R VSR+E+R+S K+G+ + + + G ++ + C ++EV +F
Sbjct: 402 LSGEIRPVSRIEQRISEAEKMGFDQVFISSHNKLQEGKFG---IKVVRCGKIEEVFQHLF 458
>gi|421276129|ref|ZP_15726952.1| DNA repair protein RadA [Streptococcus mitis SPAR10]
gi|395878082|gb|EJG89149.1| DNA repair protein RadA [Streptococcus mitis SPAR10]
Length = 397
Score = 331 bits (849), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 178/389 (45%), Positives = 256/389 (65%), Gaps = 13/389 (3%)
Query: 195 EVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQ 254
E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ ++ V V+YVSGEES +Q
Sbjct: 20 EFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSQV------GTVLYVSGEESAQQ 73
Query: 255 IGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQ 314
I RA+R+ E +LY+ T+++ + +V+ + P LIIDSIQT+ ++G G + Q
Sbjct: 74 IKLRAERLGDIDSEFYLYAETNMQSVRAEVERIQPDFLIIDSIQTIMSPEISGVQGSVSQ 133
Query: 315 VKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRS 374
V+E T+ L++ AK NI + + GHVTK G +AGPR+LEH+VD VLY EGE+ ++R+LR+
Sbjct: 134 VREVTAELMQLAKTNNIAIFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGERHHTFRILRA 193
Query: 375 VKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIE 434
VKNRFGST+E+G+FEM GL V NPS++FL E+ + G ++ V M+G+R L E
Sbjct: 194 VKNRFGSTNEIGIFEMQSGGLVEVLNPSEVFLEERLDGA---TGSSIVVTMEGTRPILAE 250
Query: 435 IQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAG 492
+QAL R G+ +RA +I++VL K+AGL LQ +L GV L E A
Sbjct: 251 VQALVTPTMFGNAKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAI 310
Query: 493 DLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSA 552
DLAVA AI SS+ + P F+GE+GL GE+R V+R+E+R++ AKLG+ K VPK++
Sbjct: 311 DLAVAVAIASSYKDKPTNPQECFVGELGLTGEIRRVNRIEQRINEAAKLGFTKIYVPKNS 370
Query: 553 EKSLATLGFEQMEFIGCKNLKEVINVVFT 581
+ ++++ IG ++EV+ VF+
Sbjct: 371 LTGIKPP--KEIQVIGVTTIQEVLKKVFS 397
>gi|419481093|ref|ZP_14020889.1| DNA repair protein RadA [Streptococcus pneumoniae GA40563]
gi|379582500|gb|EHZ47378.1| DNA repair protein RadA [Streptococcus pneumoniae GA40563]
Length = 420
Score = 331 bits (849), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 183/421 (43%), Positives = 268/421 (63%), Gaps = 26/421 (6%)
Query: 163 KPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKST 222
KP ++ V + VN+ +++ E RVLGGG+VPGSLVLIGGDPG+GKST
Sbjct: 22 KPMKLAEVTSINVNRTKTEME-----------EFNRVLGGGVVPGSLVLIGGDPGIGKST 70
Query: 223 LLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVE 282
LLLQ++ ++ V V+YVSGEES +QI RA+R+ E +LY+ T+++ +
Sbjct: 71 LLLQVSTQLSQV------GTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSVRA 124
Query: 283 KVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKS 342
+V+ + P LIIDSIQT+ ++G G + QV+E T+ L++ AK NI + + GHVTK
Sbjct: 125 EVERIQPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELMQLAKTNNIAIFIVGHVTKE 184
Query: 343 GDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPS 402
G +AGPR+LEH+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS
Sbjct: 185 GTLAGPRMLEHMVDTVLYFEGERHHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPS 244
Query: 403 KIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMI 460
++FL E+ + G ++ V M+G+R L E+QAL R G+ +RA +I
Sbjct: 245 QVFLEERLDGA---TGSSIVVTMEGTRPILAEVQALVTPTMFGNAKRTTTGLDFNRASLI 301
Query: 461 ISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIG 520
++VL K+AGL LQ +L G+ L E A DLAVA AI SS+ + P F+GE+G
Sbjct: 302 MAVLEKRAGLLLQNQDAYLKSAGGIKLDEPAIDLAVAVAIASSYKDKPTNPQECFVGELG 361
Query: 521 LGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGF-EQMEFIGCKNLKEVINVV 579
L GE+R V+R+E+R++ AKLG+ K VP++ SL + ++++ IG ++EV+ V
Sbjct: 362 LTGEIRRVNRIEQRINEAAKLGFTKIYVPQN---SLTGITLPKEIQVIGVTTIQEVLKKV 418
Query: 580 F 580
F
Sbjct: 419 F 419
>gi|418177106|ref|ZP_12813691.1| DNA repair protein RadA [Streptococcus pneumoniae GA41565]
gi|353845548|gb|EHE25588.1| DNA repair protein RadA [Streptococcus pneumoniae GA41565]
Length = 420
Score = 331 bits (849), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 183/421 (43%), Positives = 268/421 (63%), Gaps = 26/421 (6%)
Query: 163 KPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKST 222
KP ++ V + VN+ +++ E RVLGGG+VPGSLVLIGGDPG+GKST
Sbjct: 22 KPMKLAEVTSINVNRTKTEME-----------EFNRVLGGGVVPGSLVLIGGDPGIGKST 70
Query: 223 LLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVE 282
LLLQ++ ++ V V+YVSGEES +QI RA+R+ E +LY+ T+++ +
Sbjct: 71 LLLQVSTQLSQV------GTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSVRA 124
Query: 283 KVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKS 342
+V+ + P LIIDSIQT+ ++G G + QV+E T+ L++ AK NI + + GHVTK
Sbjct: 125 EVERIQPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELMQLAKTNNIAIFIVGHVTKE 184
Query: 343 GDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPS 402
G +AGPR+LEH+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS
Sbjct: 185 GTLAGPRMLEHMVDTVLYFEGERHHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPS 244
Query: 403 KIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMI 460
++FL E+ + G ++ V M+G+R L E+QAL R G+ +RA +I
Sbjct: 245 QVFLEERLDGA---TGSSIVVTMEGTRPILAEVQALVTPTMFGNAKRTTTGLDFNRASLI 301
Query: 461 ISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIG 520
+++L K+AGL LQ +L GV L E A DLAVA AI SS+ + P F+GE+G
Sbjct: 302 MAILEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKPTNPQECFVGELG 361
Query: 521 LGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGF-EQMEFIGCKNLKEVINVV 579
L GE+R V+R+E+R++ AKLG+ K VP++ SL + ++++ IG ++EV+ V
Sbjct: 362 LTGEIRRVNRIEQRINEAAKLGFTKIYVPQN---SLTGITLPKEIQVIGVTTIQEVLKKV 418
Query: 580 F 580
F
Sbjct: 419 F 419
>gi|42518491|ref|NP_964421.1| DNA repair protein RadA [Lactobacillus johnsonii NCC 533]
gi|385825318|ref|YP_005861660.1| DNA repair protein RadA-like protein [Lactobacillus johnsonii DPC
6026]
gi|417836939|ref|ZP_12483179.1| DNA repair protein RadA [Lactobacillus johnsonii pf01]
gi|41582776|gb|AAS08387.1| DNA repair protein RadA-like protein [Lactobacillus johnsonii NCC
533]
gi|329666762|gb|AEB92710.1| DNA repair protein RadA-like protein [Lactobacillus johnsonii DPC
6026]
gi|338762618|gb|EGP13885.1| DNA repair protein RadA [Lactobacillus johnsonii pf01]
Length = 459
Score = 331 bits (849), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 186/471 (39%), Positives = 272/471 (57%), Gaps = 18/471 (3%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T + C +CGY + G C C + + + + L K PV+L
Sbjct: 5 KTRYKCRNCGYISASYLGRCPNCGAWNQFEEETQEIKKVSTKATASRLMTKIGNNDPVKL 64
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
EV K K+ P E+ RVLGGG+VPGSLVLIGGDPG+GKSTL+LQ+ +A
Sbjct: 65 TEV-KAEKEKRIVTPFE-----ELNRVLGGGIVPGSLVLIGGDPGIGKSTLMLQITGALA 118
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
H V+YVSGEES QI RADR+ ++ + LY T++++I +++ + P L
Sbjct: 119 KEHS------VLYVSGEESASQIKMRADRLGVSNSGILLYPETNMQNIRDQIDEIKPDFL 172
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
+IDSIQT+ + G QV+E TS L++ AK I + GHVTK G IAGP+++E
Sbjct: 173 VIDSIQTMNEPSLDSMVGSASQVREVTSELMKIAKNEQITTFVIGHVTKEGAIAGPKIME 232
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EG+ SYR+LRSVKNRFG+ +E+G+FEM GL VSNPS IFL E+ +
Sbjct: 233 HMVDTVLYFEGDGHHSYRILRSVKNRFGAANEIGMFEMKNEGLAEVSNPSAIFLDERLPN 292
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMKQAGL 470
S G +V V ++G+R L +IQAL + R +G+ +R ++++VL K+ L
Sbjct: 293 S---TGSSVVVSLEGTRPLLADIQALVTPTAFGYAKRTTSGLDFNRVALLLAVLEKRGNL 349
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ FL G+ L E A DLA+ A+ SS+ I + F+GE+GL GE+R V++
Sbjct: 350 MLQNQDAFLTATGGIKLNEPAIDLAICMAVASSYKNKEISSTDCFVGEVGLTGEIRRVNQ 409
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVFT 581
+E RV AK+G+++ +PK+ + ++E IG +L + + +VF
Sbjct: 410 IEARVKEAAKVGFKRIFIPKN-NLNQELKNNSEIEVIGVASLPQALKLVFN 459
>gi|374295008|ref|YP_005045199.1| DNA repair protein RadA [Clostridium clariflavum DSM 19732]
gi|359824502|gb|AEV67275.1| DNA repair protein RadA [Clostridium clariflavum DSM 19732]
Length = 454
Score = 331 bits (849), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 183/476 (38%), Positives = 289/476 (60%), Gaps = 32/476 (6%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPE----EV 167
N++ +VC +CGY W G C +C S T +Q + + K + +V
Sbjct: 4 NKSIFVCQECGYESNGWLGKCPSCNSWNTFTEE----------IQDSSMDLKKKNVFFDV 53
Query: 168 QPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQM 227
+PV + ++ ++ + +S E+ RVLGGG+V GSLVL+GGDPG+GKSTL+LQ+
Sbjct: 54 KPVNINDIEVENEE-RYSTGIS-----EMDRVLGGGIVKGSLVLVGGDPGIGKSTLILQI 107
Query: 228 AAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPL 287
+ + S VVY+SGEES++QI RADR+ + L + S T+ + I +
Sbjct: 108 C------NSIKTNSKVVYISGEESIKQIKIRADRLGVRNPNLLMVSETNFKAIQVVCERE 161
Query: 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAG 347
P +++DSIQT++ ++ + G + QV+E T+ L+R AK NI + + GHVTK G +AG
Sbjct: 162 KPALIVVDSIQTMFNEELSSAPGSVSQVREITAGLMRIAKTNNIAIFIIGHVTKEGALAG 221
Query: 348 PRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLS 407
PRVLEH+VD VLY EGE+ SYR+LR+VKNRFGST+E+G+FEM +GL V NPS + +S
Sbjct: 222 PRVLEHMVDTVLYFEGERHLSYRILRAVKNRFGSTNEIGIFEMKDIGLIEVENPSMLMIS 281
Query: 408 EQHSDSEFLAGLAVAVIMDGSRSFLIEIQAL-CVSGSTVSRHV-NGIQASRADMIISVLM 465
++ E + G + ++G+R LIEIQAL C + + R + GI +R ++++VL
Sbjct: 282 DRK---ENVPGSVIVSSLEGTRPMLIEIQALVCPTNFGMPRRMATGIDYNRITLLMAVLE 338
Query: 466 KQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGEL 525
K+ G++L ++NVV G+ L E A DL V AI SSF P+ IGE+GL GE+
Sbjct: 339 KRVGMQLHNYDAYVNVVGGLKLDEPACDLGVVGAIASSFRNKPVDMSTVLIGEVGLTGEV 398
Query: 526 RMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLG-FEQMEFIGCKNLKEVINVVF 580
R +++++KRV A++G++ C+VP K++ + +++ I +N+ E ++++
Sbjct: 399 RAINQIDKRVIEAARMGFKNCVVPAGNMKAIKQIKELKEINIIPVENVVEALSILL 454
>gi|419517864|ref|ZP_14057474.1| DNA repair protein RadA [Streptococcus pneumoniae GA08825]
gi|419527052|ref|ZP_14066599.1| DNA repair protein RadA [Streptococcus pneumoniae GA17719]
gi|421286561|ref|ZP_15737328.1| DNA repair protein RadA [Streptococcus pneumoniae GA58771]
gi|379568215|gb|EHZ33195.1| DNA repair protein RadA [Streptococcus pneumoniae GA17719]
gi|379642077|gb|EIA06609.1| DNA repair protein RadA [Streptococcus pneumoniae GA08825]
gi|395890820|gb|EJH01823.1| DNA repair protein RadA [Streptococcus pneumoniae GA58771]
Length = 397
Score = 331 bits (849), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 179/389 (46%), Positives = 256/389 (65%), Gaps = 15/389 (3%)
Query: 195 EVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQ 254
E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ ++ V V+YVSGEES +Q
Sbjct: 20 EFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSQV------GTVLYVSGEESAQQ 73
Query: 255 IGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQ 314
I RA+R+ E +LY+ T+++ + +V+ + P LIIDSIQT+ ++G G + Q
Sbjct: 74 IKLRAERLGDIDSEFYLYAETNMQSVRAEVERIQPDFLIIDSIQTIMSPEISGVQGSVSQ 133
Query: 315 VKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRS 374
V+E T+ L++ AK NI + + GHVTK G +AGPR+LEH+VD VLY EGE+ ++R+LR+
Sbjct: 134 VREVTAELMQLAKTNNIAIFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGERHHTFRILRA 193
Query: 375 VKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIE 434
VKNRFGST+E+G+FEM GL V NPS++FL E+ + G ++ V M+G+R L E
Sbjct: 194 VKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGA---TGSSIVVTMEGTRPILAE 250
Query: 435 IQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAG 492
+QAL R G+ +RA +I++VL K+AGL LQ +L GV L E A
Sbjct: 251 VQALVTPTMFGNAKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAI 310
Query: 493 DLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSA 552
DLAVA AI SS+ + P F+GE+GL GE+R V+R+E+R++ AKLG+ K VP++
Sbjct: 311 DLAVAVAIASSYKDKPTNPQECFVGELGLTGEIRRVNRIEQRINETAKLGFTKIYVPQN- 369
Query: 553 EKSLATLGF-EQMEFIGCKNLKEVINVVF 580
SL + ++++ IG ++EV+ VF
Sbjct: 370 --SLTGITLPKEIQVIGVTTIQEVLKKVF 396
>gi|422879788|ref|ZP_16926253.1| DNA repair protein RadA [Streptococcus sanguinis SK1059]
gi|422929632|ref|ZP_16962573.1| DNA repair protein RadA [Streptococcus sanguinis ATCC 29667]
gi|422932600|ref|ZP_16965531.1| DNA repair protein RadA [Streptococcus sanguinis SK340]
gi|332365199|gb|EGJ42962.1| DNA repair protein RadA [Streptococcus sanguinis SK1059]
gi|339614534|gb|EGQ19229.1| DNA repair protein RadA [Streptococcus sanguinis ATCC 29667]
gi|339618351|gb|EGQ22949.1| DNA repair protein RadA [Streptococcus sanguinis SK340]
Length = 400
Score = 331 bits (849), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 180/390 (46%), Positives = 250/390 (64%), Gaps = 13/390 (3%)
Query: 194 NEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVE 253
+E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ L V+YVSGEES E
Sbjct: 19 DEFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVST------QLSHQGIVLYVSGEESAE 72
Query: 254 QIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLM 313
QI RA+R+ E +LY+ T++++I +++ + P LIIDSIQTV ++ G +
Sbjct: 73 QIKLRAERLGDIDSEFYLYAETNMQNIRTEIEKIKPDFLIIDSIQTVVSPEISSVQGSVS 132
Query: 314 QVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLR 373
QV+E T+ L++ AK NI + GH+TK G +AGPR LEH+VD VLY EGE+ ++R+LR
Sbjct: 133 QVREVTAELMQLAKTNNIATFIVGHMTKEGTLAGPRTLEHMVDTVLYFEGERQHTFRILR 192
Query: 374 SVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLI 433
+VKNRFGST+E+G+FEM GL V NPS++FL E+ + G ++ V M+G+R L
Sbjct: 193 AVKNRFGSTNEIGIFEMQSGGLVEVVNPSEVFLEERLDGA---TGSSIVVTMEGTRPILA 249
Query: 434 EIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETA 491
E+QAL R G+ +RA +I++VL K+AGL LQ +L GV L E A
Sbjct: 250 EVQALVTPTMFGNAKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPA 309
Query: 492 GDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKS 551
DLAVA AI SS+ + P FIGEIGL GE+R V+R+E+R++ AKLG+ K PK+
Sbjct: 310 IDLAVAVAIASSYKDLPTNPQECFIGEIGLTGEIRRVNRIEQRINEAAKLGFTKVYAPKN 369
Query: 552 AEKSLATLGFEQMEFIGCKNLKEVINVVFT 581
+ L + ++ IG + EV+ VF+
Sbjct: 370 SLNGLKVT--DNIQVIGVTTIGEVLKKVFS 397
>gi|404416855|ref|ZP_10998668.1| DNA repair protein RadA [Staphylococcus arlettae CVD059]
gi|403490743|gb|EJY96275.1| DNA repair protein RadA [Staphylococcus arlettae CVD059]
Length = 455
Score = 331 bits (849), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 180/437 (41%), Positives = 271/437 (62%), Gaps = 23/437 (5%)
Query: 118 CSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRLLEVNK 177
C CGY +W G C +C + M+ S + P + + K + +L EVN
Sbjct: 10 CMACGYQSPKWMGKCPSCGAWNQMEE-SIEQQASSP---KHGVRSKDTASKVQKLNEVN- 64
Query: 178 GMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDL 237
+ P E RVLGGG+V GSLVLIGGDPG+GKSTLLLQ+ A ++ H+
Sbjct: 65 -----NETAPRIESKSAEFNRVLGGGIVSGSLVLIGGDPGIGKSTLLLQICAALSQSHN- 118
Query: 238 GEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIIDSI 297
V+Y++GEES+ Q RA+R+ + L +++ TD+E I + V+ + P +++DSI
Sbjct: 119 -----VLYITGEESLNQTKLRAERLDEDSSHLNVFAETDLEIIHDTVKKMKPDLIVVDSI 173
Query: 298 QTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDA 357
QT++ ++ + G + QV+E T +L+ AK+ NI + GHVTK G IAGPR+LEH+VD
Sbjct: 174 QTIFHPEISSAPGSVSQVRESTQSLMNIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDT 233
Query: 358 VLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLA 417
VLY EG++ +YR+LR+VKNRFGST+E+G+FEM Q GL+ V NPS++FL E+ ++ +
Sbjct: 234 VLYFEGDEHHAYRILRAVKNRFGSTNEMGIFEMKQSGLKGVKNPSEMFLEERSTN---VP 290
Query: 418 GLAVAVIMDGSRSFLIEIQALCVSGSTVS---RHVNGIQASRADMIISVLMKQAGLKLQE 474
G + M+G+R LIE+QAL V+ +T + R GI +R ++++VL K+ LQ+
Sbjct: 291 GSTIVSTMEGTRPLLIEVQAL-VTPTTFNNPRRMATGIDHNRLSLLMAVLEKKENFLLQQ 349
Query: 475 NAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKR 534
++ V GV LTE A DL + A SSF + + FIGE+GL GE+R VSR+E+R
Sbjct: 350 QDAYIKVAGGVRLTEPAVDLGIIMATASSFKDLAVDGLDCFIGEVGLTGEVRRVSRIEQR 409
Query: 535 VSTVAKLGYRKCIVPKS 551
V AKLG+++ ++P++
Sbjct: 410 VQEAAKLGFKRVVIPET 426
>gi|419782612|ref|ZP_14308412.1| DNA repair protein RadA [Streptococcus oralis SK610]
gi|383183146|gb|EIC75692.1| DNA repair protein RadA [Streptococcus oralis SK610]
Length = 407
Score = 331 bits (849), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 183/420 (43%), Positives = 266/420 (63%), Gaps = 24/420 (5%)
Query: 163 KPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKST 222
KP ++ V + VN+ +++ E RVLGGG+VPGSLVLIGGDPG+GKST
Sbjct: 9 KPMKLAEVTSINVNRTKTEME-----------EFNRVLGGGVVPGSLVLIGGDPGIGKST 57
Query: 223 LLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVE 282
LLLQ++ ++ V V+YVSGEES +QI RA+R+ E +LY+ +++ +
Sbjct: 58 LLLQVSTQLSQV------GTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAEINMQSVRA 111
Query: 283 KVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKS 342
+V+ + P LIIDSIQT+ ++G G + QV+E T+ L++ AK NI + + GHVTK
Sbjct: 112 EVERIHPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELMQLAKTNNIAIFIVGHVTKE 171
Query: 343 GDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPS 402
G +AGPR+LEH+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS
Sbjct: 172 GTLAGPRMLEHMVDTVLYFEGERHHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPS 231
Query: 403 KIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMI 460
++FL E+ + G ++ V M+G+R L E+QAL R G+ +RA +I
Sbjct: 232 QVFLEERLDGA---TGSSIVVTMEGTRPILAEVQALVTPTMFGNAKRTTTGLDFNRASLI 288
Query: 461 ISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIG 520
++VL K+AGL LQ +L GV L E A DLAVA AI SS+ + P F+GE+G
Sbjct: 289 MAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDQPTNPQECFVGELG 348
Query: 521 LGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
L GE+R V+R+E+R++ AKLG+ K VPK++ + +++E IG ++EV+ VF
Sbjct: 349 LTGEIRRVNRIEQRINEAAKLGFTKIYVPKNSLTGITPP--KEIEVIGVTTIQEVLKKVF 406
>gi|255515484|ref|ZP_05383160.1| DNA repair protein RadA [Clostridium difficile QCD-97b34]
Length = 428
Score = 331 bits (849), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 170/389 (43%), Positives = 262/389 (67%), Gaps = 12/389 (3%)
Query: 194 NEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVE 253
NE+ RVLGGG+V GSLVL+GGDPG+GKSTLL+Q+++ +V +LG+ V+Y++GEES
Sbjct: 46 NELDRVLGGGIVKGSLVLVGGDPGIGKSTLLIQVSS---NVANLGKT--VLYITGEESES 100
Query: 254 QIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLM 313
QI RA R+ I +E L++++ ++ I ++ ++P +I+DSIQTV+ ++ + G +
Sbjct: 101 QIKMRAKRLGINSENLYIFAENNLSIIESYLESVNPELIILDSIQTVFSPEISSAPGTVS 160
Query: 314 QVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLR 373
Q+KE TS ++ +KK I + GHVTK G +AGP++LEH+VD VLY EGE++++YRL+R
Sbjct: 161 QIKEGTSKFMKISKKMGISTFIVGHVTKEGSLAGPKLLEHMVDTVLYFEGERYNTYRLVR 220
Query: 374 SVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLI 433
+VKNRFGST+ELGVFEM LGL + NPSKI +SE+ D +AG + ++G+R L+
Sbjct: 221 AVKNRFGSTNELGVFEMRDLGLVELDNPSKILISEKPKD---VAGSVIISTVEGTRPMLL 277
Query: 434 EIQALC--VSGSTVSRHVNGIQASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETA 491
E+QAL S R G+ +R M+++VL K+ GL++Q +++N+V G+ + E +
Sbjct: 278 ELQALVSPTSFGIPKRTSTGVDYNRVGMLLAVLEKRVGLQIQNQDVYINIVGGIKINEPS 337
Query: 492 GDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKS 551
DL +A ++ SSF PI IA GE+GL GE+R VS +EKR++ KLG++K +VP+S
Sbjct: 338 IDLGIAISVASSFRNIPIDENIAVTGEVGLTGEVRAVSFIEKRIAECKKLGFKKIVVPRS 397
Query: 552 AEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+ + +E NL++ IN+V
Sbjct: 398 NYDVVKET--KGIEIWPVDNLRQAINIVL 424
>gi|125718942|ref|YP_001036075.1| DNA repair protein RadA [Streptococcus sanguinis SK36]
gi|125498859|gb|ABN45525.1| ATP-dependent serine protease, putative [Streptococcus sanguinis
SK36]
Length = 397
Score = 331 bits (849), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 180/390 (46%), Positives = 250/390 (64%), Gaps = 13/390 (3%)
Query: 194 NEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVE 253
+E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ L V+YVSGEES E
Sbjct: 19 DEFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVST------QLSHQGTVLYVSGEESAE 72
Query: 254 QIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLM 313
QI RA+R+ E +LY+ T++++I +++ + P LIIDSIQTV ++ G +
Sbjct: 73 QIKLRAERLGDIDSEFYLYAETNMQNIRTEIEKIKPDFLIIDSIQTVMSPEISSVQGSVS 132
Query: 314 QVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLR 373
QV+E T+ L++ AK NI + GH+TK G +AGPR LEH+VD VLY EGE+ ++R+LR
Sbjct: 133 QVREVTAELMQLAKTNNIATFIVGHMTKEGTLAGPRTLEHMVDTVLYFEGERQHTFRILR 192
Query: 374 SVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLI 433
+VKNRFGST+E+G+FEM GL V NPS++FL E+ + G ++ V M+G+R L
Sbjct: 193 AVKNRFGSTNEIGIFEMQSGGLVEVVNPSEVFLEERLDGA---TGSSIVVTMEGTRPILA 249
Query: 434 EIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETA 491
E+QAL R G+ +RA +I++VL K+AGL LQ +L GV L E A
Sbjct: 250 EVQALVTPTMFGNAKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPA 309
Query: 492 GDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKS 551
DLAVA AI SS+ + P FIGEIGL GE+R V+R+E+R++ AKLG+ K PK+
Sbjct: 310 IDLAVAVAIASSYKDLPTNPQECFIGEIGLTGEIRRVNRIEQRINEAAKLGFTKVYAPKN 369
Query: 552 AEKSLATLGFEQMEFIGCKNLKEVINVVFT 581
+ L + ++ IG + EV+ VF+
Sbjct: 370 SLNGLKVP--DNIQVIGVTTIGEVLKKVFS 397
>gi|422759913|ref|ZP_16813675.1| DNA repair protein RadA [Streptococcus dysgalactiae subsp.
dysgalactiae ATCC 27957]
gi|322412748|gb|EFY03656.1| DNA repair protein RadA [Streptococcus dysgalactiae subsp.
dysgalactiae ATCC 27957]
Length = 420
Score = 331 bits (849), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 182/393 (46%), Positives = 251/393 (63%), Gaps = 23/393 (5%)
Query: 165 EEVQPVRLLEV---NKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKS 221
E+ +PV+L +V N Q D E RVLGGG+VPGSL+LIGGDPG+GKS
Sbjct: 19 EKSKPVKLKDVDNINYHRTQTDMA---------EFNRVLGGGVVPGSLILIGGDPGIGKS 69
Query: 222 TLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIV 281
TLLLQ++ +A+ V+YVSGEES EQI R++R+ E +LY+ T+++ I
Sbjct: 70 TLLLQVSTQLAN------KGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQAIR 123
Query: 282 EKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTK 341
+++ L+P LIIDSIQT+ + G G + QV+E T+ L++ AK NI + GHVTK
Sbjct: 124 TEIENLNPDFLIIDSIQTIMSPDITGVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTK 183
Query: 342 SGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNP 401
G +AGPR+LEH+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NP
Sbjct: 184 EGTLAGPRMLEHMVDTVLYFEGERHHTFRILRAVKNRFGSTNEIGIFEMQSAGLVEVLNP 243
Query: 402 SKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADM 459
S++FL E+ + G A+ V M+GSRS L E+Q+L R G+ +R +
Sbjct: 244 SQVFLEERLDGA---TGSAIVVTMEGSRSILAEVQSLVTPTVFGNARRTTTGLDFNRVSL 300
Query: 460 IISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEI 519
I++VL K+ GL LQ +L GV L E A DLAVA AI SS+ E P AF+GE+
Sbjct: 301 IMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTNPQEAFLGEV 360
Query: 520 GLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSA 552
GL GE+R V+R+E+R++ AKLG+ K PK+A
Sbjct: 361 GLTGEIRRVTRIEQRINEAAKLGFTKIYAPKNA 393
>gi|325265655|ref|ZP_08132345.1| DNA repair protein RadA [Kingella denitrificans ATCC 33394]
gi|324982925|gb|EGC18547.1| DNA repair protein RadA [Kingella denitrificans ATCC 33394]
Length = 459
Score = 331 bits (849), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 189/476 (39%), Positives = 281/476 (59%), Gaps = 32/476 (6%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQ--KPEEV 167
K+ +T + C++CG T +W G C C T++ A + Q +W + +E+
Sbjct: 3 KSPKTLYTCTECGGTVPKWQGKCPHCGEWNTLQEGIAAPEPKNARFQ-SWAADTTQVQEL 61
Query: 168 QPVRLLEVNK---GMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLL 224
V EV + GM +LD RVLGGGLV G+++L+GGDPG+GKSTLL
Sbjct: 62 SKVTAAEVPREPTGMGELD--------------RVLGGGLVDGAVILLGGDPGIGKSTLL 107
Query: 225 LQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKV 284
LQ A++A + V+YVSGEES +Q+ RA R+ + + + L + +E + +
Sbjct: 108 LQTVALMA------KKRKVLYVSGEESAQQVALRAQRLGLDADGVHLLAEIRLEAVQAAL 161
Query: 285 QPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGD 344
+ P ++IDSIQT+Y + + G + QV+EC + R AK+ I ++ GHVTK G
Sbjct: 162 KQHQPAVVVIDSIQTMYSDQITSAPGSVSQVRECAAQFTRMAKQMGIAMIFVGHVTKDGA 221
Query: 345 IAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKI 404
IAGPRVLEH+VD VLY EG++ S+YR++R++KNRFG+ +ELGVF M + GL+ VSNPS I
Sbjct: 222 IAGPRVLEHMVDTVLYFEGDQHSNYRMIRAIKNRFGAANELGVFAMLENGLKGVSNPSAI 281
Query: 405 FLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIIS 462
FL+ D +AG V V +GSR L+EIQAL G T R G++ +R M+++
Sbjct: 282 FLASYRDD---VAGSCVLVTQEGSRPLLVEIQALVDDAHGFTPKRLTVGLEQNRLAMLLA 338
Query: 463 VLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLG 522
VL + AG+ + +F+N V GV ++E A DLAV A+ SSF P+P + GE+GL
Sbjct: 339 VLNRHAGIACFDQDVFINAVGGVKISEPAADLAVILAMVSSFRNKPLPEKMVAFGEVGLS 398
Query: 523 GELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINV 578
GE+R V+R ++R+ KLG+++ IVPK A + F +E G + L E + +
Sbjct: 399 GEVRPVARGQERLKEAEKLGFKRAIVPK-ANLPRSRKEFPGLEIFGVERLDEAVRL 453
>gi|422861609|ref|ZP_16908249.1| DNA repair protein RadA [Streptococcus sanguinis SK330]
gi|327467842|gb|EGF13332.1| DNA repair protein RadA [Streptococcus sanguinis SK330]
Length = 397
Score = 331 bits (849), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 180/390 (46%), Positives = 250/390 (64%), Gaps = 13/390 (3%)
Query: 194 NEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVE 253
+E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ L V+YVSGEES E
Sbjct: 19 DEFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVST------QLSHQGTVLYVSGEESAE 72
Query: 254 QIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLM 313
QI RA+R+ E +LY+ T++++I +++ + P LIIDSIQTV ++ G +
Sbjct: 73 QIKLRAERLGDIDSEFYLYAETNMQNIRTEIEKIKPDFLIIDSIQTVMSPEISSVQGSVS 132
Query: 314 QVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLR 373
QV+E T+ L++ AK NI + GH+TK G +AGPR LEH+VD VLY EGE+ ++R+LR
Sbjct: 133 QVREVTAELMQLAKTNNIATFIVGHMTKEGTLAGPRTLEHMVDTVLYFEGERQHTFRILR 192
Query: 374 SVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLI 433
+VKNRFGST+E+G+FEM GL V NPS++FL E+ + G ++ V M+G+R L
Sbjct: 193 AVKNRFGSTNEIGIFEMQSGGLVEVVNPSEVFLEERLDGA---TGSSIVVTMEGTRPILA 249
Query: 434 EIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETA 491
E+QAL R G+ +RA +I++VL K+AGL LQ +L GV L E A
Sbjct: 250 EVQALVTPTMFGNAKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPA 309
Query: 492 GDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKS 551
DLAVA AI SS+ + P FIGEIGL GE+R V+R+E+R++ AKLG+ K PK+
Sbjct: 310 IDLAVAVAIASSYKDLPTNPQECFIGEIGLTGEIRRVNRIEQRINEAAKLGFTKVYAPKN 369
Query: 552 AEKSLATLGFEQMEFIGCKNLKEVINVVFT 581
+ L + ++ IG + EV+ VF+
Sbjct: 370 SLNGLKVP--DNIQVIGVTTIGEVLKKVFS 397
>gi|339006575|ref|ZP_08639150.1| radA-like protein [Brevibacillus laterosporus LMG 15441]
gi|338775784|gb|EGP35312.1| radA-like protein [Brevibacillus laterosporus LMG 15441]
Length = 454
Score = 331 bits (849), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 203/471 (43%), Positives = 295/471 (62%), Gaps = 32/471 (6%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTM----KRYSAGESDEGPVVQRTWLPQKPEEVQ 168
+T +VC +CGY +W G C C + TM +R AG + G + ++ Q
Sbjct: 5 KTKFVCQECGYESPKWLGKCPGCNNWNTMVEELERKQAGGRERGMSTK--------QKAQ 56
Query: 169 PVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMA 228
P+ + +++ +LD + E+ RVLGGGLV GSLVL+GGDPG+GKSTLLLQ +
Sbjct: 57 PITEV-ISEEEPRLDTTL-------GELNRVLGGGLVLGSLVLVGGDPGIGKSTLLLQTS 108
Query: 229 AIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLS 288
+A + + V+Y+SGEESV+QI RADR+ + T L + + TD+E + E++ +
Sbjct: 109 FALAH-----QNNKVLYISGEESVKQIKMRADRLGVQTSNLLVVTETDLEQVEEQITFVD 163
Query: 289 PRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGP 348
P +IIDSIQT++ V +AG + QV+ECTS L+R AK I + + GHVTK G IAGP
Sbjct: 164 PDVVIIDSIQTIFHPAVTSAAGSVAQVRECTSHLMRIAKSKGIAIFIVGHVTKEGAIAGP 223
Query: 349 RVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSE 408
R+LEH+VDAVLY EG++ +++R+LR+VKNRFGST+E+G+FEM + GL V NPS++FL+E
Sbjct: 224 RMLEHMVDAVLYFEGDRHNTFRILRAVKNRFGSTNEMGIFEMKEKGLAEVENPSELFLAE 283
Query: 409 QHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVLMK 466
+ +AG V M+G+R L+E+QAL S +T R G+ R MI++VL K
Sbjct: 284 RPIG---VAGSTVVASMEGTRPVLVELQALVSPTSFATPRRMATGVDHQRIAMIMAVLEK 340
Query: 467 QAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELR 526
+ GL LQ ++NV GV L E A DLA+A +I SSF + IGEIGL GE+R
Sbjct: 341 RVGLMLQNQDAYVNVAGGVRLDEPAIDLAIAVSIASSFRDHSTNPYDVVIGEIGLTGEVR 400
Query: 527 MVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVIN 577
VSR+E+R+ KLG+++ I+P+ + + L +E IG KN++E +
Sbjct: 401 GVSRIEQRIREAEKLGFKRVIIPERSIRGLDKPA--GIEVIGVKNVEEALQ 449
>gi|70727482|ref|YP_254398.1| DNA repair protein RadA [Staphylococcus haemolyticus JCSC1435]
gi|68448208|dbj|BAE05792.1| radA [Staphylococcus haemolyticus JCSC1435]
Length = 454
Score = 331 bits (848), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 182/437 (41%), Positives = 265/437 (60%), Gaps = 24/437 (5%)
Query: 118 CSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRLLEVNK 177
C CGY +W G C C S M+ S+ V+ + K +++ ++
Sbjct: 10 CMACGYQSPKWMGKCPNCGSWNQMEEIVEKASNPKHGVKTSTSSAKVQKLNDIK------ 63
Query: 178 GMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDL 237
+ P E RVLGGG+V GSLVLIGGDPG+GKSTLLLQ+ A L
Sbjct: 64 -----NEVTPRVQTESKEFNRVLGGGIVSGSLVLIGGDPGIGKSTLLLQICA------SL 112
Query: 238 GEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIIDSI 297
+ V+Y++GEES+ Q RADR+ + L + + TD+E I + VQ P L++DSI
Sbjct: 113 SQKLNVLYITGEESLNQTKLRADRLDEDSSNLNVLAETDLEVIHQTVQQAQPDILVVDSI 172
Query: 298 QTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDA 357
QT+Y ++ + G + QV+E T +L+ AK+ NI + GHVTK G IAGPR+LEH+VD
Sbjct: 173 QTIYHPEISSAPGSVSQVRESTQSLMNIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDT 232
Query: 358 VLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLA 417
VLY EG++ +YR+LR+VKNRFGST+E+G+FEM Q GL+ V NPS++FL E+ ++ +
Sbjct: 233 VLYFEGDEHHAYRILRAVKNRFGSTNEMGIFEMKQSGLKGVHNPSEMFLEERSTN---VP 289
Query: 418 GLAVAVIMDGSRSFLIEIQALCVSGSTVS---RHVNGIQASRADMIISVLMKQAGLKLQE 474
G + M+G+R LIE+QAL V+ +T + R GI +R ++++VL K+ LQ+
Sbjct: 290 GSTIVATMEGTRPLLIEVQAL-VTPTTFNNPRRMATGIDHNRLSLLMAVLEKKENYLLQQ 348
Query: 475 NAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKR 534
++ V GV LTE A DL+V A SSF + + +IGE+GL GE+R VSR+E+R
Sbjct: 349 QDAYIKVAGGVRLTEPAVDLSVIVATASSFKDKAVDGLDCYIGEVGLTGEVRRVSRIEQR 408
Query: 535 VSTVAKLGYRKCIVPKS 551
V AKLG+ + I+P++
Sbjct: 409 VQEAAKLGFERVIIPQT 425
>gi|148996427|ref|ZP_01824145.1| DNA repair protein RadA [Streptococcus pneumoniae SP11-BS70]
gi|168576941|ref|ZP_02722783.1| DNA repair protein RadA [Streptococcus pneumoniae MLV-016]
gi|307066705|ref|YP_003875671.1| putative ATP-dependent serine protease [Streptococcus pneumoniae
AP200]
gi|417697512|ref|ZP_12346685.1| DNA repair protein RadA [Streptococcus pneumoniae GA41317]
gi|418147525|ref|ZP_12784292.1| DNA repair protein RadA [Streptococcus pneumoniae GA13856]
gi|419452250|ref|ZP_13992225.1| DNA repair protein RadA [Streptococcus pneumoniae EU-NP03]
gi|419470067|ref|ZP_14009929.1| DNA repair protein RadA [Streptococcus pneumoniae GA07914]
gi|419502929|ref|ZP_14042605.1| DNA repair protein RadA [Streptococcus pneumoniae GA47760]
gi|419505036|ref|ZP_14044697.1| DNA repair protein RadA [Streptococcus pneumoniae GA49194]
gi|421237498|ref|ZP_15694073.1| DNA repair protein RadA [Streptococcus pneumoniae 2071247]
gi|421244922|ref|ZP_15701423.1| DNA repair protein RadA [Streptococcus pneumoniae 2081685]
gi|147757002|gb|EDK64041.1| DNA repair protein RadA [Streptococcus pneumoniae SP11-BS70]
gi|183577404|gb|EDT97932.1| DNA repair protein RadA [Streptococcus pneumoniae MLV-016]
gi|306408242|gb|ADM83669.1| Predicted ATP-dependent serine protease [Streptococcus pneumoniae
AP200]
gi|332201953|gb|EGJ16022.1| DNA repair protein RadA [Streptococcus pneumoniae GA41317]
gi|353813723|gb|EHD93950.1| DNA repair protein RadA [Streptococcus pneumoniae GA13856]
gi|379548549|gb|EHZ13680.1| DNA repair protein RadA [Streptococcus pneumoniae GA07914]
gi|379606950|gb|EHZ71696.1| DNA repair protein RadA [Streptococcus pneumoniae GA49194]
gi|379610303|gb|EHZ75034.1| DNA repair protein RadA [Streptococcus pneumoniae GA47760]
gi|379628213|gb|EHZ92817.1| DNA repair protein RadA [Streptococcus pneumoniae EU-NP03]
gi|395605476|gb|EJG65603.1| DNA repair protein RadA [Streptococcus pneumoniae 2071247]
gi|395609422|gb|EJG69509.1| DNA repair protein RadA [Streptococcus pneumoniae 2081685]
Length = 420
Score = 331 bits (848), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 184/421 (43%), Positives = 267/421 (63%), Gaps = 26/421 (6%)
Query: 163 KPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKST 222
KP ++ V + VN+ +++ E RVLGGG+VPGSLVLIGGDPG+GKST
Sbjct: 22 KPMKLAEVTSINVNRTKTEME-----------EFNRVLGGGVVPGSLVLIGGDPGIGKST 70
Query: 223 LLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVE 282
LL Q++ ++ V V+YVSGEES +QI RA+R+ E +LY+ T+++ +
Sbjct: 71 LLQQVSTQLSQV------GTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSVRA 124
Query: 283 KVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKS 342
+V+ + P LIIDSIQT+ ++G G + QV+E T+ L++ AK NI + + GHVTK
Sbjct: 125 EVERIQPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELMQLAKTNNIAIFIVGHVTKE 184
Query: 343 GDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPS 402
G +AGPR+LEH+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS
Sbjct: 185 GTLAGPRMLEHMVDTVLYFEGERHHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPS 244
Query: 403 KIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMI 460
++FL E+ + G ++ V M+G+R L E+QAL R G+ +RA +I
Sbjct: 245 QVFLEERLDGA---TGSSIVVTMEGTRPILAEVQALVTPTMFGNAKRTTTGLDFNRASLI 301
Query: 461 ISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIG 520
++VL K+AGL LQ +L GV L E A DLAVA AI SS+ + P F+GE+G
Sbjct: 302 MAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKPTNPQECFVGELG 361
Query: 521 LGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGF-EQMEFIGCKNLKEVINVV 579
L GE+R V+R+E+R++ AKLG+ K VPK+ SL + ++++ IG ++EV+ V
Sbjct: 362 LTGEIRRVNRIEQRINEAAKLGFTKIYVPKN---SLTGITLPKEIQVIGVTTIQEVLKKV 418
Query: 580 F 580
F
Sbjct: 419 F 419
>gi|404404452|ref|ZP_10996036.1| DNA repair protein RadA [Alistipes sp. JC136]
Length = 457
Score = 331 bits (848), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 191/442 (43%), Positives = 266/442 (60%), Gaps = 29/442 (6%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTM-KRYSAGESDEGPVVQRTWLPQ-KPEEVQPV 170
+ + C +CG+ +W G C +C T + A ES LP KP+ V+ +
Sbjct: 5 KKAYFCKNCGFEAPKWLGRCPSCGEWNTFTEEIIARESGSVAATVAGPLPTAKPQRVKDI 64
Query: 171 RLLEVNKGMKQLDWRIPLSGLFGN-EVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAA 229
R E RI L GN EV RVLGGG+VPGSLVL+GG+PG+GKSTL LQ+A
Sbjct: 65 RESE--------HVRIDL----GNAEVNRVLGGGMVPGSLVLVGGEPGIGKSTLSLQIAL 112
Query: 230 IIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSP 289
+ L YVSGEES EQI RA R+ I +E +Y T +E+IV ++ P
Sbjct: 113 AANGLKTL-------YVSGEESAEQIKMRAARIGIGNDECLIYPETLLENIVAQITEHRP 165
Query: 290 RALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPR 349
++IDSIQT+Y + SAG + Q++EC + LL++AK T + + GH+TK G IAGP+
Sbjct: 166 DLVVIDSIQTIYTDLLDSSAGSVSQIRECAATLLKYAKSTGTSIFIIGHITKDGAIAGPK 225
Query: 350 VLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQ 409
+LEHIVD VL EG+ + YR+LR +KNRFG+T E+GVFEM GL+ V NPS+I L+
Sbjct: 226 ILEHIVDVVLQFEGDSNNIYRILRGIKNRFGATFEIGVFEMLDAGLRGVDNPSEILLTHY 285
Query: 410 HSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS---TVSRHVNGIQASRADMIISVLMK 466
E L+G+AV DG R +LIE+QAL VSG+ T R G R +M+++VL K
Sbjct: 286 E---EPLSGIAVGASADGVRPYLIEVQAL-VSGAAYGTPQRSTTGYDGRRMNMLLAVLEK 341
Query: 467 QAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELR 526
+ G+K+ + +FLN G + + DLAV AA+ SS+ + P+ G+ GEIGL GE+R
Sbjct: 342 RVGMKMFQKDVFLNFAGGFKVADPGLDLAVVAAVISSYYDRPVAEGVCCAGEIGLSGEVR 401
Query: 527 MVSRMEKRVSTVAKLGYRKCIV 548
R E+R+S A+LG+++ IV
Sbjct: 402 PAPRTEQRISEAARLGFKRIIV 423
>gi|389774462|ref|ZP_10192581.1| DNA repair protein RadA [Rhodanobacter spathiphylli B39]
gi|388438061|gb|EIL94816.1| DNA repair protein RadA [Rhodanobacter spathiphylli B39]
Length = 461
Score = 331 bits (848), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 200/475 (42%), Positives = 283/475 (59%), Gaps = 31/475 (6%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACE-----SVGTMKRYSAGESDEGPVVQRTWLPQKPE-- 165
+T +VC++CG +W G C C S ++ +AG+S G QR+
Sbjct: 5 KTAYVCTECGAEHSKWQGQCIECGVWNTLSAIVLEPATAGKSSVG--AQRSSYAGAAAGS 62
Query: 166 -EVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLL 224
++ P L EV M + R L+G+ E+ RVLGGGLV GS+VLIGGDPG+GKSTLL
Sbjct: 63 PKITP--LTEV---MSTTEART-LTGI--GELDRVLGGGLVQGSVVLIGGDPGIGKSTLL 114
Query: 225 LQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKV 284
LQ+ + LG P VYV+GEES+ Q+ +RA R+ ++ + L + T IE I+E+
Sbjct: 115 LQV------LGTLGLQLPSVYVTGEESLAQVASRAQRLGLSLDPLRALAETCIERILEQA 168
Query: 285 QPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGD 344
P+ L+IDSIQT++ + + G + QV+E + L RFAK+T V L GHVTK G
Sbjct: 169 MTTRPKVLVIDSIQTIWTELLTAAPGSVSQVRESAAKLTRFAKETGTSVFLVGHVTKEGG 228
Query: 345 IAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKI 404
IAGPRVLEH+VDAVLY EGE S +R+LR+ KNRFG+ +ELGVF MS GL+ V NPS I
Sbjct: 229 IAGPRVLEHMVDAVLYFEGESGSRFRVLRAFKNRFGAVNELGVFAMSDKGLREVPNPSAI 288
Query: 405 FLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIIS 462
FLS + +G AV V +G+R L+E+QAL S R G++ +R M+++
Sbjct: 289 FLSSHAGPT---SGSAVMVTREGTRPLLVEVQALVDQSSLGNPRRVTLGLEQNRLAMLLA 345
Query: 463 VLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLG 522
VL + G+ + +F+NVV G+ + ETA DL V A+ SS + P+P + GE+GL
Sbjct: 346 VLHRHGGVAAYDQDVFVNVVGGIRVQETAADLPVLLAVLSSLRDRPLPEHMITFGEVGLS 405
Query: 523 GELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVIN 577
GE+R V E+R+ A G+R+ IVPK+ +G +ME +G + L E I+
Sbjct: 406 GEIRPVPNGEERLKEAAHHGFRRAIVPKANTPKNGRVG--EMEVVGVERLSEAID 458
>gi|335043639|ref|ZP_08536666.1| putative ATP-dependent serine protease [Methylophaga
aminisulfidivorans MP]
gi|333790253|gb|EGL56135.1| putative ATP-dependent serine protease [Methylophaga
aminisulfidivorans MP]
Length = 464
Score = 331 bits (848), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 191/470 (40%), Positives = 280/470 (59%), Gaps = 24/470 (5%)
Query: 116 WVCSDCGYTDGQWWGMCRACESVGTMKR--YSAGESDEGPVVQRT--WLPQKPEEVQPVR 171
+VC +CG QW G C C + +++ YS+ S + + + ++ EVQ +
Sbjct: 8 YVCKECGAQTPQWAGRCSDCGAWNSLEEEIYSSASSTAQATISKHSGYAGEQKSEVQALG 67
Query: 172 LLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAII 231
+ + ++ W L E+ RVLGGGLV GS+VLIGGDPG+GKSTLLLQ A +
Sbjct: 68 QVTSEQAVR---WTTGLP-----ELDRVLGGGLVTGSVVLIGGDPGIGKSTLLLQAMATM 119
Query: 232 ADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRA 291
AD + SP+ Y+SGEES++QI RA+R+ + + L + T E +++ + P+
Sbjct: 120 ADSSGI---SPL-YISGEESLQQIRLRAERLQLEQAPVDLLAETHAEQMIQVAKNRKPQV 175
Query: 292 LIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVL 351
++IDSIQTV+ + + G + QV+E + L+RFAK + ++L GHVTK G +AGPRVL
Sbjct: 176 MVIDSIQTVFTELLQSAPGTVAQVRESAAQLVRFAKSSGTTMILVGHVTKQGALAGPRVL 235
Query: 352 EHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHS 411
EH+VD VLY EG+ + +R+LR+VKNRFG+ +ELGVF M++LGL+ VSNPS IFLS
Sbjct: 236 EHMVDTVLYFEGDTSTRFRILRAVKNRFGAVNELGVFGMTELGLKEVSNPSAIFLSR--- 292
Query: 412 DSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAG 469
E + G V VI +GSR L+E+QAL S R G++ +R M++++L + G
Sbjct: 293 GDESVPGSIVTVIREGSRPMLVEVQALVDSSPLGNPRRVTVGLEQNRLAMLLAILHRHGG 352
Query: 470 LKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVS 529
+ + +F+NVV GV L+ET DLAV AAI SS P+P GE+GL GE+R V
Sbjct: 353 ITCHDQDVFINVVGGVKLSETGADLAVLAAIISSLRNKPLPRDWVLFGEVGLTGEIRPVQ 412
Query: 530 RMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVV 579
E+R+ K G+ IVP + + + M+ K L EVIN++
Sbjct: 413 AGEERIKDANKHGFTHAIVPAA---NAPRKDLKGMKVHAVKQLSEVINIL 459
>gi|227888797|ref|ZP_04006602.1| DNA repair protein RadA [Lactobacillus johnsonii ATCC 33200]
gi|227850634|gb|EEJ60720.1| DNA repair protein RadA [Lactobacillus johnsonii ATCC 33200]
Length = 459
Score = 331 bits (848), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 187/472 (39%), Positives = 273/472 (57%), Gaps = 20/472 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T + C +CGY + G C C + + + + L K PV+L
Sbjct: 5 KTRYKCRNCGYISASYLGRCPNCGAWNQFEEETQEIKKVSTKATASRLMTKIGNNDPVKL 64
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
EV K K+ P E+ RVLGGG+VPGSLVLIGGDPG+GKSTL+LQ+ +A
Sbjct: 65 TEV-KAEKEKRIVTPFE-----ELNRVLGGGIVPGSLVLIGGDPGIGKSTLMLQITGALA 118
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
H V+YVSGEES QI RADR+ ++ + LY T++++I +++ + P L
Sbjct: 119 KEHS------VLYVSGEESASQIKMRADRLGVSDSGILLYPETNMQNIRDQIDEIKPDFL 172
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
+IDSIQT+ + G QV+E TS L++ AK I + GHVTK G IAGP+++E
Sbjct: 173 VIDSIQTMNEPSLDSMVGSASQVREVTSELMKIAKNEQITTFVIGHVTKEGAIAGPKIME 232
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EG+ SYR+LRSVKNRFG+ +E+G+FEM GL VSNPS IFL E+ +
Sbjct: 233 HMVDTVLYFEGDGHHSYRILRSVKNRFGAANEIGMFEMKNEGLAEVSNPSAIFLDERLPN 292
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMKQAGL 470
S G +V V ++G+R L +IQAL + R +G+ +R ++++VL K+ L
Sbjct: 293 S---TGSSVVVSLEGTRPLLADIQALVTPTAFGYAKRTTSGLDFNRVALLLAVLEKRGNL 349
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ FL G+ L E A DLA+ A+ SS+ I + F+GE+GL GE+R V++
Sbjct: 350 MLQNQDAFLTATGGIKLNEPAIDLAICMAVASSYKNKEISSTDCFVGEVGLTGEIRRVNQ 409
Query: 531 MEKRVSTVAKLGYRKCIVPKSA-EKSLATLGFEQMEFIGCKNLKEVINVVFT 581
+E RV AK+G+++ +PK+ + L ++E IG +L + + +VF
Sbjct: 410 IEARVKEAAKVGFKRIFIPKNNLNQDLKN--NSEIEVIGVASLPQALKLVFN 459
>gi|116629008|ref|YP_814180.1| DNA repair protein RadA [Lactobacillus gasseri ATCC 33323]
gi|420147690|ref|ZP_14654965.1| DNA repair protein radA [Lactobacillus gasseri CECT 5714]
gi|116094590|gb|ABJ59742.1| DNA replication and repair protein RadA [Lactobacillus gasseri ATCC
33323]
gi|398400837|gb|EJN54368.1| DNA repair protein radA [Lactobacillus gasseri CECT 5714]
Length = 459
Score = 331 bits (848), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 189/473 (39%), Positives = 271/473 (57%), Gaps = 22/473 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T + C +CGY + G C C + + + + L K PV+L
Sbjct: 5 KTRYKCRNCGYISASYLGRCPNCGAWNQFEEETQEVKKVSTKATASRLMTKIGNNDPVKL 64
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
EV K K+ P E+ RVLGGG+VPGSLVLIGGDPG+GKSTL+LQ+ +A
Sbjct: 65 NEV-KAEKEKRIVTPFE-----ELNRVLGGGIVPGSLVLIGGDPGIGKSTLMLQITGALA 118
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
H V+YVSGEES QI RADR+ ++ + LY T++++I E++ + P L
Sbjct: 119 KEHS------VLYVSGEESASQIKMRADRLGVSNSGILLYPETNMQNIREQIDEIKPDFL 172
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
+IDSIQT+ + G QV+E TS L++ AK I + GHVTK G IAGP+++E
Sbjct: 173 VIDSIQTMNEPSLDSMVGSASQVREVTSELMKIAKNDQITTFVIGHVTKEGAIAGPKIME 232
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EG+ SYR+LRSVKNRFG+ +E+G+FEM GL V+NPS IFL E+ +
Sbjct: 233 HMVDTVLYFEGDGHHSYRILRSVKNRFGAANEIGMFEMKNEGLTEVNNPSAIFLDERLPN 292
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMKQAGL 470
S G AV V ++G+R L +IQAL + R +G+ +R ++++VL K+ L
Sbjct: 293 S---TGSAVVVSLEGTRPLLADIQALVTPTAFGYAKRTTSGLDFNRVALLLAVLEKRGNL 349
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ FL G+ L E A DLA+ A+ SS+ I F+GE+GL GE+R V++
Sbjct: 350 MLQNQDAFLTATGGIKLNEPAIDLAICMAVASSYKNKEISATDCFVGEVGLTGEIRRVNQ 409
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLAT--LGFEQMEFIGCKNLKEVINVVFT 581
+E RV AK+G+++ +PK +L T +E IG +L + + +VF
Sbjct: 410 IEARVKEAAKVGFKRIFIPK---HNLTTELKNNSAIEVIGVASLPQALKLVFN 459
>gi|260589118|ref|ZP_05855031.1| DNA repair protein RadA [Blautia hansenii DSM 20583]
gi|260540538|gb|EEX21107.1| DNA repair protein RadA [Blautia hansenii DSM 20583]
Length = 456
Score = 331 bits (848), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 196/472 (41%), Positives = 279/472 (59%), Gaps = 20/472 (4%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQP 169
K +T + C +CGY +W G C C + + + +G K E P
Sbjct: 3 KGKKTLFFCQNCGYESPKWLGQCPGCREWNSFVEETVSATAKGKTTASGSTTGKKNE--P 60
Query: 170 VRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAA 229
V L +++ Q + RI E+ RVLGGG+VPGS+VL+GGDPG+GKSTLLLQ+
Sbjct: 61 VILADISI---QENDRIKTEI---EELDRVLGGGIVPGSMVLVGGDPGIGKSTLLLQVCR 114
Query: 230 IIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSP 289
+ G+ V+YVSGEES+ QI RA R+ E L L T++E+I ++ + P
Sbjct: 115 QLT-----GKGHKVLYVSGEESLGQIKLRAKRIGEFNENLLLLCETNLENIRSVIEKVKP 169
Query: 290 RALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPR 349
++IDSIQT+Y V+ + G + QV+E T L++ AK I V + GHVTK G +AGPR
Sbjct: 170 EMVVIDSIQTMYNEEVSSAPGSVSQVRESTGVLMQIAKGMGISVFIVGHVTKDGSVAGPR 229
Query: 350 VLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQ 409
VLEH+VD VLY EG++ YR+LR VKNRFGST+E+GVFEM + GL V NPS++ L+ +
Sbjct: 230 VLEHMVDTVLYFEGDRQVIYRILRGVKNRFGSTNEIGVFEMREKGLMEVKNPSQVMLNGR 289
Query: 410 HSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMKQ 467
+D+ +G AV ++G+R LIEIQAL + R GI +R +++++VL K+
Sbjct: 290 PTDA---SGTAVVCSVEGTRPILIEIQALVTRTNFGLPRRTSVGIDYNRVNLLMAVLEKR 346
Query: 468 AGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRM 527
AGL L + ++N+ G+ L E A DL V AI SS+ I I GE+GL GE+R
Sbjct: 347 AGLHLGDCDAYVNLAGGMKLGEPAIDLGVVLAIVSSYKNQVIDERILIFGEVGLSGEVRG 406
Query: 528 VSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVV 579
VS E RV KLG+ CI+PK+ +SL G +++ IG N+KE +N +
Sbjct: 407 VSMAESRVREAEKLGFTSCIMPKANVESLQ--GKYEIKLIGVANIKEAMNCI 456
>gi|418018713|ref|ZP_12658268.1| DNA repair protein RadA [Streptococcus salivarius M18]
gi|345526155|gb|EGX29467.1| DNA repair protein RadA [Streptococcus salivarius M18]
Length = 415
Score = 331 bits (848), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 175/361 (48%), Positives = 239/361 (66%), Gaps = 11/361 (3%)
Query: 194 NEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVE 253
+E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ +A+ V+YVSGEES E
Sbjct: 37 DEFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLAN------KGTVLYVSGEESAE 90
Query: 254 QIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLM 313
QI R++R+ E +LY+ T+++ + +V+ + P LIIDSIQT+ ++G G +
Sbjct: 91 QIKLRSERLGDIDNEFYLYAETNMQAVRSQVEAIKPDFLIIDSIQTIMSPEISGVQGSVS 150
Query: 314 QVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLR 373
QV+E T+ L++ AK NI + GHVTK G +AGPR+LEH+VD VLY EGE+ ++R+LR
Sbjct: 151 QVREVTAELMQIAKTNNIATFIVGHVTKEGQLAGPRMLEHMVDTVLYFEGERHHTFRILR 210
Query: 374 SVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLI 433
+VKNRFGST+E+G+FEM GL V NPS++FL E+ + G A+ V M+GSR L
Sbjct: 211 AVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGA---TGSAIVVTMEGSRPILA 267
Query: 434 EIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETA 491
E+QAL R G+ +R +I++VL K+ GL LQ +L GV L E A
Sbjct: 268 EVQALVTPTVFGNAKRTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPA 327
Query: 492 GDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKS 551
DLAVA AI SS+ E P AFIGEIGL GE+R V+R+E+R++ AKLG+ K PK+
Sbjct: 328 IDLAVAVAIASSYKELPTNPQEAFIGEIGLTGEIRRVTRIEQRINEAAKLGFTKIYAPKN 387
Query: 552 A 552
+
Sbjct: 388 S 388
>gi|422863530|ref|ZP_16910161.1| DNA repair protein RadA [Streptococcus sanguinis SK408]
gi|422880915|ref|ZP_16927371.1| DNA repair protein RadA [Streptococcus sanguinis SK355]
gi|327472504|gb|EGF17935.1| DNA repair protein RadA [Streptococcus sanguinis SK408]
gi|332365615|gb|EGJ43374.1| DNA repair protein RadA [Streptococcus sanguinis SK355]
Length = 397
Score = 331 bits (848), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 180/390 (46%), Positives = 250/390 (64%), Gaps = 13/390 (3%)
Query: 194 NEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVE 253
+E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ L V+YVSGEES E
Sbjct: 19 DEFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVST------QLSHQGTVLYVSGEESAE 72
Query: 254 QIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLM 313
QI RA+R+ E +LY+ T++++I +++ + P LIIDSIQTV ++ G +
Sbjct: 73 QIKLRAERLGDIDSEFYLYAETNMQNIRTEIEKIKPDFLIIDSIQTVMSPEISSVQGSVS 132
Query: 314 QVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLR 373
QV+E T+ L++ AK NI + GH+TK G +AGPR LEH+VD VLY EGE+ ++R+LR
Sbjct: 133 QVREVTAELMQLAKTNNIATFIVGHMTKEGTLAGPRTLEHMVDTVLYFEGERQHTFRILR 192
Query: 374 SVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLI 433
+VKNRFGST+E+G+FEM GL V NPS++FL E+ + G ++ V M+G+R L
Sbjct: 193 AVKNRFGSTNEIGIFEMQSGGLVEVINPSEVFLEERLDGA---TGSSIVVTMEGTRPILA 249
Query: 434 EIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETA 491
E+QAL R G+ +RA +I++VL K+AGL LQ +L GV L E A
Sbjct: 250 EVQALVTPTMFGNAKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPA 309
Query: 492 GDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKS 551
DLAVA AI SS+ + P FIGEIGL GE+R V+R+E+R++ AKLG+ K PK+
Sbjct: 310 IDLAVAVAIASSYKDLPTNPQECFIGEIGLTGEIRRVNRIEQRINEAAKLGFTKVYAPKN 369
Query: 552 AEKSLATLGFEQMEFIGCKNLKEVINVVFT 581
+ L + ++ IG + EV+ VF+
Sbjct: 370 SLNGLKVP--DNIQVIGVTTIGEVLKKVFS 397
>gi|300780456|ref|ZP_07090312.1| DNA repair protein RadA [Corynebacterium genitalium ATCC 33030]
gi|300534566|gb|EFK55625.1| DNA repair protein RadA [Corynebacterium genitalium ATCC 33030]
Length = 469
Score = 331 bits (848), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 195/477 (40%), Positives = 276/477 (57%), Gaps = 26/477 (5%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSA---GESDEGPVVQRTWLPQKPEEVQ 168
RT + CS+CGY+ +W G C C + GT+ +A S G R P Q
Sbjct: 4 KRTVYTCSECGYSSPKWLGRCPECGAWGTLAESAAPVSAASGAGSARPRVLTPSS--AAQ 61
Query: 169 PVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMA 228
P+ + + LS G E+ RVLG G+VPGS+VL+ G+PGVGKSTLLL++A
Sbjct: 62 PITKVNATAAHR-------LSTGIG-ELDRVLGRGIVPGSVVLLSGEPGVGKSTLLLEVA 113
Query: 229 A----IIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKV 284
+ AD D GEP +YV+ EES Q+ RA+R + LFL + ++++ + V
Sbjct: 114 SKWASAGADGAD-GEPRTALYVTAEESASQVRGRAERTGALQDRLFLAAESNLDVLFGHV 172
Query: 285 QPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGD 344
+ P LI+DS+QT+ GV G AGG+ Q + T+AL AK TN+P+LL GHVTK G+
Sbjct: 173 DQVKPDLLIVDSVQTMQAPGVEGVAGGVAQSRAVTAALTSLAKSTNLPILLVGHVTKDGN 232
Query: 345 IAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKI 404
+AGPRVLEH+VD VL EG++ +S R+LR +KNRFG+TDE+G FE + G++ V +PS +
Sbjct: 233 VAGPRVLEHLVDVVLNFEGDRQTSLRMLRGLKNRFGATDEVGCFEQTADGIREVPDPSGL 292
Query: 405 FLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVS--GSTVSRHVNGIQASRADMIIS 462
FLS + + G AV V +DG R L E+QAL V + R V G+ +R M+++
Sbjct: 293 FLSHRGQTPD---GSAVTVAIDGVRPILAEVQALTVDPVNKSPRRVVTGLDYNRVPMVLA 349
Query: 463 VLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLG 522
VL + G + + ++ V GV +TETA DLAVA A SS P+P IGE+GL
Sbjct: 350 VLQARCGERTNDKDAYVATVGGVRITETATDLAVALATWSSLHNTPLPPRTVVIGEVGLA 409
Query: 523 GELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVV 579
GELR V +++R++ ++LGY IVP ++ G E +LKE I VV
Sbjct: 410 GELRRVPSLDRRLAEASRLGYENAIVPGGSKGPANQHGMRVAEV---GSLKEAIGVV 463
>gi|15923516|ref|NP_371050.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus Mu50]
gi|15926203|ref|NP_373736.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus N315]
gi|21282210|ref|NP_645298.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus MW2]
gi|49485390|ref|YP_042611.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus
MSSA476]
gi|82750233|ref|YP_415974.1| DNA repair protein RadA [Staphylococcus aureus RF122]
gi|148266985|ref|YP_001245928.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus JH9]
gi|150393032|ref|YP_001315707.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus JH1]
gi|156978854|ref|YP_001441113.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus Mu3]
gi|253315635|ref|ZP_04838848.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus str.
CF-Marseille]
gi|255005319|ref|ZP_05143920.2| DNA repair protein RadA [Staphylococcus aureus subsp. aureus
Mu50-omega]
gi|257795376|ref|ZP_05644355.1| DNA repair protein RadA [Staphylococcus aureus A9781]
gi|258408937|ref|ZP_05681218.1| DNA repair protein RadA [Staphylococcus aureus A9763]
gi|258420426|ref|ZP_05683369.1| DNA repair protein RadA [Staphylococcus aureus A9719]
gi|258422628|ref|ZP_05685534.1| DNA repair and recombination protein radA [Staphylococcus aureus
A9635]
gi|258439346|ref|ZP_05690278.1| radA protein [Staphylococcus aureus A9299]
gi|258444086|ref|ZP_05692423.1| radA protein [Staphylococcus aureus A8115]
gi|258446354|ref|ZP_05694512.1| DNA repair protein RadA [Staphylococcus aureus A6300]
gi|258448447|ref|ZP_05696562.1| DNA repair protein RadA [Staphylococcus aureus A6224]
gi|258453803|ref|ZP_05701777.1| DNA repair protein RadA [Staphylococcus aureus A5937]
gi|269202148|ref|YP_003281417.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus ED98]
gi|282894959|ref|ZP_06303182.1| DNA repair protein RadA [Staphylococcus aureus A8117]
gi|282915848|ref|ZP_06323613.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus D139]
gi|282928862|ref|ZP_06336453.1| DNA repair protein RadA [Staphylococcus aureus A10102]
gi|283769681|ref|ZP_06342573.1| DNA repair protein RadA/Sms [Staphylococcus aureus subsp. aureus
H19]
gi|295406902|ref|ZP_06816705.1| DNA repair protein RadA [Staphylococcus aureus A8819]
gi|296275771|ref|ZP_06858278.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus MR1]
gi|297208761|ref|ZP_06925189.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus ATCC
51811]
gi|297246274|ref|ZP_06930123.1| DNA repair protein RadA [Staphylococcus aureus A8796]
gi|300912851|ref|ZP_07130293.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus TCH70]
gi|379020296|ref|YP_005296958.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus M013]
gi|384546806|ref|YP_005736059.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus ED133]
gi|384549390|ref|YP_005738642.1| putative DNA repair protein [Staphylococcus aureus subsp. aureus
JKD6159]
gi|384863854|ref|YP_005749213.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus ECT-R
2]
gi|385780791|ref|YP_005756962.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus
11819-97]
gi|386728283|ref|YP_006194666.1| DNA repair protein [Staphylococcus aureus subsp. aureus 71193]
gi|387149686|ref|YP_005741250.1| DNA repair protein RadA [Staphylococcus aureus 04-02981]
gi|387601880|ref|YP_005733401.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus ST398]
gi|387779665|ref|YP_005754463.1| putative DNA repair protein [Staphylococcus aureus subsp. aureus
LGA251]
gi|404477911|ref|YP_006709341.1| DNA repair protein [Staphylococcus aureus 08BA02176]
gi|415694000|ref|ZP_11455605.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus CGS03]
gi|416840759|ref|ZP_11903946.1| DNA repair protein RadA [Staphylococcus aureus O11]
gi|416846025|ref|ZP_11906368.1| DNA repair protein RadA [Staphylococcus aureus O46]
gi|417650776|ref|ZP_12300541.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus 21172]
gi|417654166|ref|ZP_12303893.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus 21193]
gi|417796797|ref|ZP_12444001.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus 21305]
gi|417801388|ref|ZP_12448481.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus 21318]
gi|417890362|ref|ZP_12534439.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus 21200]
gi|417893586|ref|ZP_12537612.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus 21201]
gi|417895956|ref|ZP_12539932.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus 21235]
gi|417899732|ref|ZP_12543633.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus 21259]
gi|417902186|ref|ZP_12546055.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus 21266]
gi|417902883|ref|ZP_12546744.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus 21269]
gi|418282544|ref|ZP_12895309.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus 21202]
gi|418308130|ref|ZP_12919783.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus 21194]
gi|418310654|ref|ZP_12922190.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus 21331]
gi|418312986|ref|ZP_12924484.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus 21334]
gi|418315093|ref|ZP_12926557.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus 21340]
gi|418423698|ref|ZP_12996845.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus VRS1]
gi|418426642|ref|ZP_12999668.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus VRS2]
gi|418429568|ref|ZP_13002499.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus VRS3a]
gi|418432463|ref|ZP_13005263.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus VRS4]
gi|418436177|ref|ZP_13007994.1| radA- DNA repair protein RadA/Sms [Staphylococcus aureus subsp.
aureus VRS5]
gi|418439076|ref|ZP_13010797.1| radA- DNA repair protein RadA/Sms [Staphylococcus aureus subsp.
aureus VRS6]
gi|418442056|ref|ZP_13013673.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus VRS7]
gi|418445184|ref|ZP_13016675.1| radA- DNA repair protein RadA/Sms [Staphylococcus aureus subsp.
aureus VRS8]
gi|418448124|ref|ZP_13019529.1| radA- DNA repair protein RadA/Sms [Staphylococcus aureus subsp.
aureus VRS9]
gi|418450948|ref|ZP_13022290.1| radA- DNA repair protein RadA/Sms [Staphylococcus aureus subsp.
aureus VRS10]
gi|418453965|ref|ZP_13025238.1| radA- DNA repair protein RadA/Sms [Staphylococcus aureus subsp.
aureus VRS11a]
gi|418456869|ref|ZP_13028084.1| radA- DNA repair protein RadA/Sms [Staphylococcus aureus subsp.
aureus VRS11b]
gi|418559669|ref|ZP_13124204.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus 21252]
gi|418566765|ref|ZP_13131133.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus 21272]
gi|418573412|ref|ZP_13137606.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus 21333]
gi|418599299|ref|ZP_13162788.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus 21343]
gi|418639537|ref|ZP_13201782.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus IS-3]
gi|418654841|ref|ZP_13216734.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus IS-99]
gi|418662535|ref|ZP_13224079.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus
IS-122]
gi|418877375|ref|ZP_13431614.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus
CIG1165]
gi|418880232|ref|ZP_13434452.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus
CIG1213]
gi|418883159|ref|ZP_13437359.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus
CIG1769]
gi|418885819|ref|ZP_13439969.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus
CIG1150]
gi|418888426|ref|ZP_13442563.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus
CIG1524]
gi|418893985|ref|ZP_13448086.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus
CIG1057]
gi|418913716|ref|ZP_13467689.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus
CIGC340D]
gi|418919340|ref|ZP_13473286.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus
CIGC348]
gi|418930555|ref|ZP_13484403.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus
CIG1750]
gi|418933456|ref|ZP_13487280.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus
CIGC128]
gi|418950318|ref|ZP_13502503.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus
IS-160]
gi|418980364|ref|ZP_13528147.1| RadA [Staphylococcus aureus subsp. aureus DR10]
gi|418987426|ref|ZP_13535099.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus
CIG1835]
gi|418990420|ref|ZP_13538081.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus
CIG1096]
gi|418993240|ref|ZP_13540879.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus
CIG290]
gi|419785911|ref|ZP_14311655.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus IS-M]
gi|421149288|ref|ZP_15608946.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus str.
Newbould 305]
gi|443637190|ref|ZP_21121275.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus 21236]
gi|443638281|ref|ZP_21122328.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus 21196]
gi|448741468|ref|ZP_21723432.1| DNA repair protein RadA [Staphylococcus aureus KT/314250]
gi|448744004|ref|ZP_21725909.1| DNA repair protein RadA [Staphylococcus aureus KT/Y21]
gi|13700416|dbj|BAB41714.1| radA [Staphylococcus aureus subsp. aureus N315]
gi|14246294|dbj|BAB56688.1| DNA repair protein homologue [Staphylococcus aureus subsp. aureus
Mu50]
gi|21203646|dbj|BAB94346.1| radA [Staphylococcus aureus subsp. aureus MW2]
gi|49243833|emb|CAG42258.1| putative DNA repair protein [Staphylococcus aureus subsp. aureus
MSSA476]
gi|82655764|emb|CAI80164.1| DNA repair protein [Staphylococcus aureus RF122]
gi|147740054|gb|ABQ48352.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus JH9]
gi|149945484|gb|ABR51420.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus JH1]
gi|156720989|dbj|BAF77406.1| DNA repair protein homologue [Staphylococcus aureus subsp. aureus
Mu3]
gi|257789348|gb|EEV27688.1| DNA repair protein RadA [Staphylococcus aureus A9781]
gi|257840288|gb|EEV64751.1| DNA repair protein RadA [Staphylococcus aureus A9763]
gi|257843616|gb|EEV68022.1| DNA repair protein RadA [Staphylococcus aureus A9719]
gi|257847200|gb|EEV71208.1| DNA repair and recombination protein radA [Staphylococcus aureus
A9635]
gi|257847683|gb|EEV71682.1| radA protein [Staphylococcus aureus A9299]
gi|257850756|gb|EEV74701.1| radA protein [Staphylococcus aureus A8115]
gi|257854948|gb|EEV77893.1| DNA repair protein RadA [Staphylococcus aureus A6300]
gi|257858316|gb|EEV81203.1| DNA repair protein RadA [Staphylococcus aureus A6224]
gi|257864059|gb|EEV86813.1| DNA repair protein RadA [Staphylococcus aureus A5937]
gi|262074438|gb|ACY10411.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus ED98]
gi|282320144|gb|EFB50489.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus D139]
gi|282589470|gb|EFB94559.1| DNA repair protein RadA [Staphylococcus aureus A10102]
gi|282762641|gb|EFC02778.1| DNA repair protein RadA [Staphylococcus aureus A8117]
gi|283459828|gb|EFC06918.1| DNA repair protein RadA/Sms [Staphylococcus aureus subsp. aureus
H19]
gi|283469818|emb|CAQ49029.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus ST398]
gi|285816225|gb|ADC36712.1| DNA repair protein RadA [Staphylococcus aureus 04-02981]
gi|294968133|gb|EFG44159.1| DNA repair protein RadA [Staphylococcus aureus A8819]
gi|296886706|gb|EFH25611.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus ATCC
51811]
gi|297176872|gb|EFH36130.1| DNA repair protein RadA [Staphylococcus aureus A8796]
gi|298693857|gb|ADI97079.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus ED133]
gi|300885955|gb|EFK81158.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus TCH70]
gi|302332239|gb|ADL22432.1| putative DNA repair protein [Staphylococcus aureus subsp. aureus
JKD6159]
gi|312829021|emb|CBX33863.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus ECT-R
2]
gi|315128818|gb|EFT84817.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus CGS03]
gi|323439795|gb|EGA97512.1| DNA repair protein RadA [Staphylococcus aureus O11]
gi|323443103|gb|EGB00723.1| DNA repair protein RadA [Staphylococcus aureus O46]
gi|329727898|gb|EGG64347.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus 21172]
gi|329731980|gb|EGG68336.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus 21193]
gi|334268183|gb|EGL86628.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus 21305]
gi|334276914|gb|EGL95157.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus 21318]
gi|341841162|gb|EGS82625.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus 21235]
gi|341843781|gb|EGS85002.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus 21266]
gi|341844340|gb|EGS85557.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus 21259]
gi|341850502|gb|EGS91620.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus 21269]
gi|341854357|gb|EGS95228.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus 21201]
gi|341855089|gb|EGS95943.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus 21200]
gi|344176767|emb|CCC87229.1| putative DNA repair protein [Staphylococcus aureus subsp. aureus
LGA251]
gi|359829605|gb|AEV77583.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus M013]
gi|364521780|gb|AEW64530.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus
11819-97]
gi|365169545|gb|EHM60791.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus 21202]
gi|365236358|gb|EHM77254.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus 21331]
gi|365236927|gb|EHM77803.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus 21334]
gi|365241610|gb|EHM82354.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus 21194]
gi|365243723|gb|EHM84391.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus 21340]
gi|371974512|gb|EHO91842.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus 21252]
gi|371981777|gb|EHO98939.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus 21333]
gi|371983510|gb|EHP00652.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus 21272]
gi|374397406|gb|EHQ68616.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus 21343]
gi|375014238|gb|EHS07930.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus IS-99]
gi|375017177|gb|EHS10799.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus IS-3]
gi|375036034|gb|EHS29121.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus
IS-122]
gi|375377284|gb|EHS80764.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus
IS-160]
gi|377696083|gb|EHT20439.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus
CIG1165]
gi|377698333|gb|EHT22681.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus
CIG1057]
gi|377716272|gb|EHT40455.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus
CIG1769]
gi|377716422|gb|EHT40604.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus
CIG1750]
gi|377719214|gb|EHT43384.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus
CIG1835]
gi|377722542|gb|EHT46667.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus
CIG1096]
gi|377727117|gb|EHT51224.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus
CIG1150]
gi|377732670|gb|EHT56720.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus
CIG1213]
gi|377747203|gb|EHT71169.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus
CIG290]
gi|377754878|gb|EHT78783.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus
CIG1524]
gi|377758322|gb|EHT82207.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus
CIGC340D]
gi|377767305|gb|EHT91103.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus
CIGC348]
gi|377771236|gb|EHT94990.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus
CIGC128]
gi|379991892|gb|EIA13354.1| RadA [Staphylococcus aureus subsp. aureus DR10]
gi|383361720|gb|EID39086.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus IS-M]
gi|384229576|gb|AFH68823.1| RadA [Staphylococcus aureus subsp. aureus 71193]
gi|387720915|gb|EIK08806.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus VRS3a]
gi|387721080|gb|EIK08967.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus VRS2]
gi|387722490|gb|EIK10288.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus VRS1]
gi|387727529|gb|EIK15042.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus VRS4]
gi|387729537|gb|EIK16972.1| radA- DNA repair protein RadA/Sms [Staphylococcus aureus subsp.
aureus VRS5]
gi|387731577|gb|EIK18859.1| radA- DNA repair protein RadA/Sms [Staphylococcus aureus subsp.
aureus VRS6]
gi|387738380|gb|EIK25423.1| radA- DNA repair protein RadA/Sms [Staphylococcus aureus subsp.
aureus VRS8]
gi|387739631|gb|EIK26627.1| radA- DNA repair protein RadA/Sms [Staphylococcus aureus subsp.
aureus VRS9]
gi|387739793|gb|EIK26776.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus VRS7]
gi|387746896|gb|EIK33616.1| radA- DNA repair protein RadA/Sms [Staphylococcus aureus subsp.
aureus VRS10]
gi|387748306|gb|EIK34995.1| radA- DNA repair protein RadA/Sms [Staphylococcus aureus subsp.
aureus VRS11a]
gi|387749111|gb|EIK35755.1| radA- DNA repair protein RadA/Sms [Staphylococcus aureus subsp.
aureus VRS11b]
gi|394330205|gb|EJE56297.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus str.
Newbould 305]
gi|404439400|gb|AFR72593.1| putative DNA repair protein [Staphylococcus aureus 08BA02176]
gi|443406068|gb|ELS64653.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus 21236]
gi|443409718|gb|ELS68210.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus 21196]
gi|445547769|gb|ELY16031.1| DNA repair protein RadA [Staphylococcus aureus KT/314250]
gi|445562743|gb|ELY18909.1| DNA repair protein RadA [Staphylococcus aureus KT/Y21]
Length = 454
Score = 331 bits (848), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 181/437 (41%), Positives = 267/437 (61%), Gaps = 24/437 (5%)
Query: 118 CSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRLLEVNK 177
C CGY +W G C C + M+ ++ V+ L K +++ ++
Sbjct: 10 CMACGYQSPKWMGKCPNCGAWNQMEEIVEKAANPKHGVKTKELAGKVQKLNSIK------ 63
Query: 178 GMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDL 237
P E RVLGGG+V GSLVLIGGDPG+GKSTLLLQ+ A L
Sbjct: 64 -----HETTPRVLTDSAEFNRVLGGGIVSGSLVLIGGDPGIGKSTLLLQICA------SL 112
Query: 238 GEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIIDSI 297
+ V+Y++GEES+ Q RA+R+ + EL + + TD+E I + V+ P L++DSI
Sbjct: 113 SQKKKVLYITGEESLSQTKLRAERLDEDSSELQVLAETDLEVIYQTVKEEQPDLLVVDSI 172
Query: 298 QTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDA 357
QT+Y ++ + G + QV+E T +L+ AK+ NI + GHVTK G IAGPR+LEH+VD
Sbjct: 173 QTIYHPEISSAPGSVSQVRESTQSLMNIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDT 232
Query: 358 VLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLA 417
VLY EG++ +YR+LR+VKNRFGST+E+G+FEM Q GL+ V+NPS++FL E+ ++ +
Sbjct: 233 VLYFEGDEHHAYRILRAVKNRFGSTNEMGIFEMKQSGLKGVNNPSEMFLEERSTN---VP 289
Query: 418 GLAVAVIMDGSRSFLIEIQALCVSGSTVS---RHVNGIQASRADMIISVLMKQAGLKLQE 474
G + M+G+R LIE+QAL V+ +T + R GI +R ++++VL K+ LQ+
Sbjct: 290 GSTIVATMEGTRPLLIEVQAL-VTPTTFNNPRRMATGIDHNRLSLLMAVLEKKENYLLQQ 348
Query: 475 NAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKR 534
++ V GV LTE A DL+V A SSF + + +IGE+GL GE+R VSR+E+R
Sbjct: 349 QDAYIKVAGGVKLTEPAVDLSVIVATASSFKDKAVDGLDCYIGEVGLTGEVRRVSRIEQR 408
Query: 535 VSTVAKLGYRKCIVPKS 551
V AKLG+++ I+PK+
Sbjct: 409 VQEAAKLGFKRVIIPKN 425
>gi|386830169|ref|YP_006236823.1| putative DNA repair protein [Staphylococcus aureus subsp. aureus HO
5096 0412]
gi|417798475|ref|ZP_12445641.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus 21310]
gi|418656936|ref|ZP_13218720.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus
IS-105]
gi|334275805|gb|EGL94080.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus 21310]
gi|375031936|gb|EHS25196.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus
IS-105]
gi|385195561|emb|CCG15170.1| putative DNA repair protein [Staphylococcus aureus subsp. aureus HO
5096 0412]
Length = 454
Score = 331 bits (848), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 181/437 (41%), Positives = 267/437 (61%), Gaps = 24/437 (5%)
Query: 118 CSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRLLEVNK 177
C CGY +W G C C + M+ ++ V+ L K +++ ++
Sbjct: 10 CMACGYQSPKWMGKCPNCGAWNQMEEIVEKAANPKHGVKTKELAGKVQKLNSIK------ 63
Query: 178 GMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDL 237
P E RVLGGG+V GSLVLIGGDPG+GKSTLLLQ+ A L
Sbjct: 64 -----HETTPRVLTDSAEFNRVLGGGIVSGSLVLIGGDPGIGKSTLLLQICA------SL 112
Query: 238 GEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIIDSI 297
+ V+Y++GEES+ Q RA+R+ + EL + + TD+E I + V+ P L++DSI
Sbjct: 113 SQKKKVLYITGEESLSQTKLRAERLDEDSSELQVLAETDLEVIYQTVKEEQPDLLVVDSI 172
Query: 298 QTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDA 357
QT+Y ++ + G + QV+E T +L+ AK+ NI + GHVTK G IAGPR+LEH+VD
Sbjct: 173 QTIYHPEISSAPGSVSQVRESTQSLMNIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDT 232
Query: 358 VLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLA 417
VLY EG++ +YR+LR+VKNRFGST+E+G+FEM Q GL+ V+NPS++FL E+ ++ +
Sbjct: 233 VLYFEGDEHHAYRILRAVKNRFGSTNEMGIFEMKQSGLKGVNNPSEMFLEERSTN---VP 289
Query: 418 GLAVAVIMDGSRSFLIEIQALCVSGSTVS---RHVNGIQASRADMIISVLMKQAGLKLQE 474
G + M+G+R LIE+QAL V+ +T + R GI +R ++++VL K+ LQ+
Sbjct: 290 GSTIVATMEGTRPLLIEVQAL-VTPTTFNNPRRMATGIDHNRLSLLMAVLEKKENYLLQQ 348
Query: 475 NAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKR 534
++ V GV LTE A DL+V A SSF + + +IGE+GL GE+R VSR+E+R
Sbjct: 349 QDAYIKVAGGVKLTEPAVDLSVIVATASSFKDEAVDGLDCYIGEVGLTGEVRRVSRIEQR 408
Query: 535 VSTVAKLGYRKCIVPKS 551
V AKLG+++ I+PK+
Sbjct: 409 VQEAAKLGFKRVIIPKN 425
>gi|309810825|ref|ZP_07704626.1| DNA repair protein RadA [Dermacoccus sp. Ellin185]
gi|308435131|gb|EFP58962.1| DNA repair protein RadA [Dermacoccus sp. Ellin185]
Length = 459
Score = 331 bits (848), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 188/478 (39%), Positives = 286/478 (59%), Gaps = 35/478 (7%)
Query: 111 ANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQK-PEEVQP 169
+ RT + C++CG+ +W G C C++ GT++ GPV RT K +P
Sbjct: 6 SKRTTYRCTECGWQTVKWVGRCGECQAWGTVEEVG------GPVAVRTQAASKVANPAKP 59
Query: 170 VRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAA 229
+R ++ K I +G+ E RVLGGGLVPG+++L+ G+PG+GKSTLLL +AA
Sbjct: 60 IREVDATKA------SITTTGV--GEFDRVLGGGLVPGAVMLVAGEPGIGKSTLLLDVAA 111
Query: 230 IIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSP 289
A + V+YVSGEES Q+ RADR + L+L S TD+ ++ + + P
Sbjct: 112 RAARAD-----TKVLYVSGEESAAQVRLRADRTDAVADTLYLASETDLATVLAHIDAVQP 166
Query: 290 RALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPR 349
L+IDS+QT+ V GSAG + QV+E +A+++ AK NI +L GHVTK G IAGPR
Sbjct: 167 TFLVIDSVQTIASAEVDGSAGNVSQVREVAAAIIQVAKARNISTVLVGHVTKDGSIAGPR 226
Query: 350 VLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQ 409
+LEH+VD V+ EGE+ S RL+R+VKNR+G TDE+G F++S G+Q +S+PS +FL+
Sbjct: 227 LLEHLVDVVITFEGERHSRLRLVRAVKNRYGPTDEVGCFDLSDGGIQGLSDPSSLFLT-- 284
Query: 410 HSDSEFLAGLAVAVIMDGSRSFLIEIQALCV--SGSTVSRHVNGIQASRADMIISVLMKQ 467
S + +AG V V ++G R + E+QAL +G + R +G+ +SR MI++VL ++
Sbjct: 285 -SRDKPVAGTCVTVTLEGRRPLVTEVQALVAPSAGGSPRRTTSGVDSSRTAMILAVLERR 343
Query: 468 AGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRM 527
AG + +++ V G L+E A DLAVA ++ SS E P+P G+ +GE+GL G++R
Sbjct: 344 AGAPVSRADCYVSTVGGAKLSEPASDLAVALSLLSSAQEKPLPAGLIAVGEVGLSGDIRA 403
Query: 528 VSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQ----MEFIGCKNLKEVINVVFT 581
VS + +R++ A++G+ K I+P +LG E+ M C +L + V T
Sbjct: 404 VSGVARRLAEAARIGFDKAIIPA------GSLGTEKAPAGMRIAECADLGSAMRAVGT 455
>gi|419511494|ref|ZP_14051128.1| DNA repair protein RadA [Streptococcus pneumoniae GA05578]
gi|419515766|ref|ZP_14055384.1| DNA repair protein RadA [Streptococcus pneumoniae GA02506]
gi|421282279|ref|ZP_15733069.1| DNA repair protein RadA [Streptococcus pneumoniae GA04216]
gi|379635964|gb|EIA00522.1| DNA repair protein RadA [Streptococcus pneumoniae GA05578]
gi|379639769|gb|EIA04308.1| DNA repair protein RadA [Streptococcus pneumoniae GA02506]
gi|395884249|gb|EJG95287.1| DNA repair protein RadA [Streptococcus pneumoniae GA04216]
Length = 397
Score = 331 bits (848), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 179/389 (46%), Positives = 256/389 (65%), Gaps = 15/389 (3%)
Query: 195 EVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQ 254
E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ ++ V V+YVSGEES +Q
Sbjct: 20 EFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSQV------GTVLYVSGEESAQQ 73
Query: 255 IGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQ 314
I RA+R+ E +LY+ T+++ + +V+ + P LIIDSIQT+ ++G G + Q
Sbjct: 74 IKLRAERLGDIDSEFYLYAETNMQSVRAEVERIQPDFLIIDSIQTIMSPEISGVQGSVSQ 133
Query: 315 VKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRS 374
V+E T+ L++ AK NI + + GHVTK G +AGPR+LEH+VD VLY EGE+ ++R+LR+
Sbjct: 134 VREVTAELMQLAKTNNIAIFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGERHHTFRILRA 193
Query: 375 VKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIE 434
VKNRFGST+E+G+FEM GL V NPS++FL E+ + G ++ V M+G+R L E
Sbjct: 194 VKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGA---TGSSIVVTMEGTRPILAE 250
Query: 435 IQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAG 492
+QAL R G+ +RA +I++VL K+AGL LQ +L GV L E A
Sbjct: 251 VQALVTPTMFGNAKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAI 310
Query: 493 DLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSA 552
DLAVA AI SS+ + P F+GE+GL GE+R V+R+E+R++ AKLG+ K VP++
Sbjct: 311 DLAVAVAIASSYKDKPTNPQECFVGELGLTGEIRRVNRIEQRINEAAKLGFTKIYVPQN- 369
Query: 553 EKSLATLGF-EQMEFIGCKNLKEVINVVF 580
SL + ++++ IG ++EV+ VF
Sbjct: 370 --SLTGITLPKEIQVIGVTTIQEVLKKVF 396
>gi|377832157|ref|ZP_09815121.1| DNA repair protein RadA [Lactobacillus mucosae LM1]
gi|377554164|gb|EHT15879.1| DNA repair protein RadA [Lactobacillus mucosae LM1]
Length = 458
Score = 331 bits (848), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 185/445 (41%), Positives = 273/445 (61%), Gaps = 25/445 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQR----TWLPQKPEEVQ 168
+T ++C +CGY ++ G C C T+ + + T + KP+ V+
Sbjct: 5 KTQYICQNCGYNSPRYLGRCPNCGQWNTLVEERVETVNAQSTTRHSSTLTGIVAKPQRVK 64
Query: 169 PVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMA 228
+ ++ + +L NE+ RVLGGG+VPGSL+LIGGDPG+GKSTLLLQ++
Sbjct: 65 DIDAQKLPRVKTKL-----------NELNRVLGGGIVPGSLILIGGDPGIGKSTLLLQVS 113
Query: 229 AIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLS 288
++D E V+YVSGEES QI RA+R+ +A ++ ++Y T ++ I + L+
Sbjct: 114 GQLSD-----EGHSVLYVSGEESGAQIKMRAERLAVAGDDFYIYPETSMDSIRATIDDLN 168
Query: 289 PRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGP 348
P ++IDS+QT+ V + G + Q++E T+ L++ AK NI + + GHVTK G +AGP
Sbjct: 169 PEYVVIDSVQTMQATDVNSAIGSVSQIREVTAQLMQIAKSKNITIFVVGHVTKGGALAGP 228
Query: 349 RVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSE 408
++LEH+VD VLY EG+ +YR+LR+VKNRFGST+ELG+FEM GL V NPS+IFL E
Sbjct: 229 KILEHMVDTVLYFEGDLHHTYRILRAVKNRFGSTNELGIFEMRTAGLAEVKNPSEIFLEE 288
Query: 409 QHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMK 466
+ D+ G AV V ++G+R L+EIQAL R G+ +R +I++VL K
Sbjct: 289 RLQDA---TGSAVVVSLEGTRPILVEIQALVTPTVFGNAQRTATGLNRNRVSLIMAVLEK 345
Query: 467 QAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELR 526
+A L LQ +L GV L E A DLA+A AI SS+ + AF+GE+GL GE+R
Sbjct: 346 RANLMLQNQDAYLKAAGGVKLDEPAIDLAIAIAIASSYRDKGTRPDDAFVGEVGLTGEIR 405
Query: 527 MVSRMEKRVSTVAKLGYRKCIVPKS 551
VSR+E+RV+ AKLG+++ +VPK+
Sbjct: 406 RVSRIEQRVAEAAKLGFKRILVPKN 430
>gi|340399708|ref|YP_004728733.1| DNA repair protein radA [Streptococcus salivarius CCHSS3]
gi|387760487|ref|YP_006067464.1| DNA repair protein RadA [Streptococcus salivarius 57.I]
gi|387784942|ref|YP_006071025.1| DNA repair protein radA [Streptococcus salivarius JIM8777]
gi|338743701|emb|CCB94211.1| DNA repair protein radA [Streptococcus salivarius CCHSS3]
gi|338745824|emb|CCB96190.1| DNA repair protein radA [Streptococcus salivarius JIM8777]
gi|339291254|gb|AEJ52601.1| DNA repair protein RadA [Streptococcus salivarius 57.I]
Length = 415
Score = 331 bits (848), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 175/361 (48%), Positives = 239/361 (66%), Gaps = 11/361 (3%)
Query: 194 NEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVE 253
+E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ +A+ V+YVSGEES E
Sbjct: 37 DEFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLAN------KGTVLYVSGEESAE 90
Query: 254 QIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLM 313
QI R++R+ E +LY+ T+++ + +V+ + P LIIDSIQT+ ++G G +
Sbjct: 91 QIKLRSERLGDIDNEFYLYAETNMQAVRSQVEAIKPDFLIIDSIQTIMSPEISGVQGSVS 150
Query: 314 QVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLR 373
QV+E T+ L++ AK NI + GHVTK G +AGPR+LEH+VD VLY EGE+ ++R+LR
Sbjct: 151 QVREVTAELMQIAKTNNIATFIVGHVTKEGQLAGPRMLEHMVDTVLYFEGERHHTFRILR 210
Query: 374 SVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLI 433
+VKNRFGST+E+G+FEM GL V NPS++FL E+ + G A+ V M+GSR L
Sbjct: 211 AVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGA---TGSAIVVTMEGSRPILA 267
Query: 434 EIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETA 491
E+QAL R G+ +R +I++VL K+ GL LQ +L GV L E A
Sbjct: 268 EVQALVTPTVFGNAKRTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPA 327
Query: 492 GDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKS 551
DLAVA AI SS+ E P AFIGEIGL GE+R V+R+E+R++ AKLG+ K PK+
Sbjct: 328 IDLAVAVAIASSYKELPTNPQEAFIGEIGLTGEIRRVTRIEQRINEAAKLGFTKIYAPKN 387
Query: 552 A 552
+
Sbjct: 388 S 388
>gi|309800214|ref|ZP_07694395.1| DNA repair protein RadA [Streptococcus infantis SK1302]
gi|308116155|gb|EFO53650.1| DNA repair protein RadA [Streptococcus infantis SK1302]
Length = 407
Score = 331 bits (848), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 183/421 (43%), Positives = 267/421 (63%), Gaps = 24/421 (5%)
Query: 163 KPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKST 222
KP ++ V + VN+ +++ E RVLGGG+VPGSLVLIGGDPG+GKST
Sbjct: 9 KPMKLAEVTSINVNRTKTEME-----------EFNRVLGGGVVPGSLVLIGGDPGIGKST 57
Query: 223 LLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVE 282
LLLQ++ ++ V V+YVSGEES +QI RA+R+ E +LY+ T+++ +
Sbjct: 58 LLLQVSTQLSQV------GAVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSVRA 111
Query: 283 KVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKS 342
+V+ + P LIIDSIQT+ ++G G + QV+E T+ L++ AK NI + + GHVTK
Sbjct: 112 EVERIQPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELMQLAKTNNIAIFIVGHVTKE 171
Query: 343 GDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPS 402
G +AGPR+LEH+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS
Sbjct: 172 GTLAGPRMLEHMVDTVLYFEGERHHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPS 231
Query: 403 KIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMI 460
++FL E+ + G ++ V M+G+R L E+QAL R G+ +RA +I
Sbjct: 232 QVFLEERLDGA---TGSSIVVTMEGTRPILAEVQALVTPTMFGNAKRTTTGLDFNRASLI 288
Query: 461 ISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIG 520
++VL K+AGL LQ +L GV L E A DLAVA AI SS+ + P F+GE+G
Sbjct: 289 MAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKPTNPQECFVGELG 348
Query: 521 LGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
L GE+R V+R+E+R++ AKLG+ K VPK++ + ++++ IG + EV+ VF
Sbjct: 349 LTGEIRRVNRIEQRINEAAKLGFTKIYVPKNSLTGIKPP--KEIQVIGVTTIGEVLKKVF 406
Query: 581 T 581
+
Sbjct: 407 S 407
>gi|347520794|ref|YP_004778365.1| DNA repair protein [Lactococcus garvieae ATCC 49156]
gi|385832157|ref|YP_005869932.1| DNA repair protein [Lactococcus garvieae Lg2]
gi|420143588|ref|ZP_14651085.1| DNA repair protein radA [Lactococcus garvieae IPLA 31405]
gi|343179362|dbj|BAK57701.1| DNA repair protein [Lactococcus garvieae ATCC 49156]
gi|343181310|dbj|BAK59648.1| DNA repair protein [Lactococcus garvieae Lg2]
gi|391856459|gb|EIT66999.1| DNA repair protein radA [Lactococcus garvieae IPLA 31405]
Length = 407
Score = 331 bits (848), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 181/390 (46%), Positives = 252/390 (64%), Gaps = 15/390 (3%)
Query: 194 NEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVE 253
+E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ L V+YVSGEES +
Sbjct: 29 DEFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVST------QLASRGRVLYVSGEESAQ 82
Query: 254 QIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLM 313
QI RA+R+ + +LY+ T+++ I +V+ L P LI+DSIQT+ + + G +
Sbjct: 83 QIKLRAERLGDIDTDFYLYAETNMQSIRNEVERLQPDFLIVDSIQTIMTPEIQSTQGSVS 142
Query: 314 QVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLR 373
QV+E T L++ AK +I + GHVTK G +AGPR+LEH+VD VLY EGE+ +++R+LR
Sbjct: 143 QVREVTGELMQLAKTNDIATFIVGHVTKEGQLAGPRMLEHMVDTVLYFEGERQNTFRILR 202
Query: 374 SVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLI 433
+VKNRFGST+E+G+FEM GL V+NPS++FL E+ S G A+ ++G+R L+
Sbjct: 203 AVKNRFGSTNEIGIFEMQGNGLVEVTNPSEVFLEERLEGS---TGSAIVCALEGTRPILV 259
Query: 434 EIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETA 491
EIQAL R +G+ +R +I++VL K+AG LQ+ +L GV L E A
Sbjct: 260 EIQALTTPTMFGNAKRTTSGLDFNRVSLIMAVLEKRAGFLLQQQDAYLKSAGGVKLDEPA 319
Query: 492 GDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKS 551
DLAVA AI SS+ E P FIGEIGL GE+R V+RME+R++ +KLG++K PK+
Sbjct: 320 IDLAVAVAIASSYKEEPTDARECFIGEIGLTGEIRRVTRMEQRLNEASKLGFQKVYAPKN 379
Query: 552 AEKSLATLGF-EQMEFIGCKNLKEVINVVF 580
SLA + E +E +G L E + VF
Sbjct: 380 ---SLAGVDIPENLEVVGVTTLSECLKKVF 406
>gi|387756625|ref|YP_006063604.1| putative DNA repair protein [Streptococcus pneumoniae OXC141]
gi|301799214|emb|CBW31727.1| putative DNA repair protein [Streptococcus pneumoniae OXC141]
Length = 420
Score = 331 bits (848), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 184/421 (43%), Positives = 267/421 (63%), Gaps = 26/421 (6%)
Query: 163 KPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKST 222
KP ++ V + VN+ +++ E RVLGGG+VPGSLVLIGGDPG+GKST
Sbjct: 22 KPMKLAEVTSINVNRTKTEME-----------EFNRVLGGGVVPGSLVLIGGDPGIGKST 70
Query: 223 LLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVE 282
LLLQ++ ++ V V+YVSGEES +QI RA+R+ E +LY+ T+++ +
Sbjct: 71 LLLQVSTQLSQV------GTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSVRA 124
Query: 283 KVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKS 342
+V+ + P LIIDSIQT+ ++G G + QV+E T+ L++ AK NI + + GHVTK
Sbjct: 125 EVERIQPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELMQLAKTNNIAIFIVGHVTKE 184
Query: 343 GDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPS 402
G +AGPR+LEH+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS
Sbjct: 185 GTLAGPRMLEHMVDTVLYFEGERHHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPS 244
Query: 403 KIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMI 460
++FL E+ + G ++ V M+G+R L E+QAL R G+ +RA +I
Sbjct: 245 QVFLEERLDGA---TGSSIVVTMEGTRPILAEVQALVTPTMFGNAKRTTTGLDFNRASLI 301
Query: 461 ISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIG 520
++VL K+AGL LQ +L GV L E A DLAVA AI S + + P F+GE+G
Sbjct: 302 MAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASIYKDKPTNPQECFVGELG 361
Query: 521 LGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGF-EQMEFIGCKNLKEVINVV 579
L GE+R V+R+E+R++ AKLG+ K VPK+ SL + ++++ IG ++EV+ V
Sbjct: 362 LTGEIRRVNRIEQRINEAAKLGFTKIYVPKN---SLTGITLPKEIQVIGVTTIQEVLKKV 418
Query: 580 F 580
F
Sbjct: 419 F 419
>gi|418131440|ref|ZP_12768317.1| DNA repair protein RadA [Streptococcus pneumoniae GA11304]
gi|421297494|ref|ZP_15748195.1| DNA repair protein RadA [Streptococcus pneumoniae GA60080]
gi|353808908|gb|EHD89170.1| DNA repair protein RadA [Streptococcus pneumoniae GA11304]
gi|395906271|gb|EJH17171.1| DNA repair protein RadA [Streptococcus pneumoniae GA60080]
Length = 397
Score = 331 bits (848), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 179/389 (46%), Positives = 256/389 (65%), Gaps = 15/389 (3%)
Query: 195 EVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQ 254
E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ ++ V V+YVSGEES +Q
Sbjct: 20 EFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSQV------GTVLYVSGEESAQQ 73
Query: 255 IGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQ 314
I RA+R+ E +LY+ T+++ + +V+ + P LIIDSIQT+ ++G G + Q
Sbjct: 74 IKLRAERLGDIDSEFYLYAETNMQSVRAEVERIQPDFLIIDSIQTIMSPEISGVQGSVSQ 133
Query: 315 VKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRS 374
V+E T+ L++ AK NI + + GHVTK G +AGPR+LEH+VD VLY EGE+ ++R+LR+
Sbjct: 134 VREVTAELMQLAKTNNIAIFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGERHHTFRILRA 193
Query: 375 VKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIE 434
VKNRFGST+E+G+FEM GL V NPS++FL E+ + G ++ V M+G+R L E
Sbjct: 194 VKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGA---TGSSIVVTMEGTRPILAE 250
Query: 435 IQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAG 492
+QAL R G+ +RA +I++VL K+AGL LQ +L GV L E A
Sbjct: 251 VQALVTPTMFGNAKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAI 310
Query: 493 DLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSA 552
DLAVA AI SS+ + P F+GE+GL GE+R V+R+E+R++ AKLG+ K VP++
Sbjct: 311 DLAVAVAIASSYKDKPTNPQECFVGELGLTGEIRRVNRIEQRINEAAKLGFTKIYVPQN- 369
Query: 553 EKSLATLGF-EQMEFIGCKNLKEVINVVF 580
SL + ++++ IG ++EV+ VF
Sbjct: 370 --SLTGITLPKEIQVIGVTTIQEVLKKVF 396
>gi|57651402|ref|YP_185458.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus COL]
gi|151220700|ref|YP_001331522.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus str.
Newman]
gi|161353534|ref|YP_499080.2| DNA repair protein RadA [Staphylococcus aureus subsp. aureus NCTC
8325]
gi|161508765|ref|YP_001574424.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|162138559|ref|YP_493214.2| DNA repair protein RadA [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|221141038|ref|ZP_03565531.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus str.
JKD6009]
gi|258452742|ref|ZP_05700740.1| DNA repair protein RadA [Staphylococcus aureus A5948]
gi|262049568|ref|ZP_06022437.1| hypothetical protein SAD30_0362 [Staphylococcus aureus D30]
gi|262053156|ref|ZP_06025319.1| hypothetical protein SA930_0090 [Staphylococcus aureus 930918-3]
gi|282924439|ref|ZP_06332111.1| DNA repair protein RadA [Staphylococcus aureus A9765]
gi|284023535|ref|ZP_06377933.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus 132]
gi|304381876|ref|ZP_07364523.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus ATCC
BAA-39]
gi|379013807|ref|YP_005290043.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus VC40]
gi|384861188|ref|YP_005743908.1| putative DNA repair protein [Staphylococcus aureus subsp. aureus
str. JKD6008]
gi|387142215|ref|YP_005730608.1| putative DNA repair protein [Staphylococcus aureus subsp. aureus
TW20]
gi|415688909|ref|ZP_11452424.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus CGS01]
gi|417648370|ref|ZP_12298196.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus 21189]
gi|418279359|ref|ZP_12892722.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus 21178]
gi|418286193|ref|ZP_12898844.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus 21209]
gi|418318088|ref|ZP_12929502.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus 21232]
gi|418570506|ref|ZP_13134774.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus 21283]
gi|418578416|ref|ZP_13142511.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus
CIG1114]
gi|418642036|ref|ZP_13204237.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus IS-24]
gi|418646215|ref|ZP_13208326.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus IS-88]
gi|418651284|ref|ZP_13213292.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus IS-91]
gi|418658741|ref|ZP_13220450.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus
IS-111]
gi|418871528|ref|ZP_13425904.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus
IS-125]
gi|418902789|ref|ZP_13456830.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus
CIG1770]
gi|418905106|ref|ZP_13459135.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus
CIGC345D]
gi|418924753|ref|ZP_13478656.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus
CIG2018]
gi|418927841|ref|ZP_13481727.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus
CIG1612]
gi|418949164|ref|ZP_13501423.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus
IS-157]
gi|418954662|ref|ZP_13506618.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus
IS-189]
gi|440707551|ref|ZP_20888246.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus 21282]
gi|440734000|ref|ZP_20913613.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus DSM
20231]
gi|57285588|gb|AAW37682.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus COL]
gi|150373500|dbj|BAF66760.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus str.
Newman]
gi|160367574|gb|ABX28545.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|257859615|gb|EEV82465.1| DNA repair protein RadA [Staphylococcus aureus A5948]
gi|259158951|gb|EEW44032.1| hypothetical protein SA930_0090 [Staphylococcus aureus 930918-3]
gi|259162308|gb|EEW46881.1| hypothetical protein SAD30_0362 [Staphylococcus aureus D30]
gi|269940098|emb|CBI48474.1| putative DNA repair protein [Staphylococcus aureus subsp. aureus
TW20]
gi|282592850|gb|EFB97854.1| DNA repair protein RadA [Staphylococcus aureus A9765]
gi|302750417|gb|ADL64594.1| putative DNA repair protein [Staphylococcus aureus subsp. aureus
str. JKD6008]
gi|304339662|gb|EFM05609.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus ATCC
BAA-39]
gi|315196663|gb|EFU27010.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus CGS01]
gi|329731033|gb|EGG67406.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus 21189]
gi|365167747|gb|EHM59124.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus 21209]
gi|365170693|gb|EHM61654.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus 21178]
gi|365244329|gb|EHM84990.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus 21232]
gi|371984015|gb|EHP01143.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus 21283]
gi|374362504|gb|AEZ36609.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus VC40]
gi|375017813|gb|EHS11416.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus IS-24]
gi|375026190|gb|EHS19576.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus IS-91]
gi|375033415|gb|EHS26608.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus IS-88]
gi|375037641|gb|EHS30660.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus
IS-111]
gi|375368081|gb|EHS72008.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus
IS-125]
gi|375369608|gb|EHS73481.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus
IS-157]
gi|375372427|gb|EHS76167.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus
IS-189]
gi|377696443|gb|EHT20798.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus
CIG1114]
gi|377737753|gb|EHT61762.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus
CIG1612]
gi|377741804|gb|EHT65789.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus
CIG1770]
gi|377746048|gb|EHT70019.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus
CIG2018]
gi|377766646|gb|EHT90479.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus
CIGC345D]
gi|436431895|gb|ELP29247.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus DSM
20231]
gi|436505873|gb|ELP41732.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus 21282]
Length = 454
Score = 331 bits (848), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 181/437 (41%), Positives = 267/437 (61%), Gaps = 24/437 (5%)
Query: 118 CSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRLLEVNK 177
C CGY +W G C C + M+ ++ V+ L K +++ ++
Sbjct: 10 CMACGYQSPKWMGKCPNCGAWNQMEEIVEKAANPKHGVKTKELAGKVQKLNSIK------ 63
Query: 178 GMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDL 237
P E RVLGGG+V GSLVLIGGDPG+GKSTLLLQ+ A L
Sbjct: 64 -----HETTPRVLTDSAEFNRVLGGGIVSGSLVLIGGDPGIGKSTLLLQICA------SL 112
Query: 238 GEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIIDSI 297
+ V+Y++GEES+ Q RA+R+ + EL + + TD+E I + V+ P L++DSI
Sbjct: 113 SQKKKVLYITGEESLSQTKLRAERLDEDSSELQVLAETDLEVIYQTVKEEQPDLLVVDSI 172
Query: 298 QTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDA 357
QT+Y ++ + G + QV+E T +L+ AK+ NI + GHVTK G IAGPR+LEH+VD
Sbjct: 173 QTIYHPEISSAPGSVSQVRESTQSLMNIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDT 232
Query: 358 VLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLA 417
VLY EG++ +YR+LR+VKNRFGST+E+G+FEM Q GL+ V+NPS++FL E+ ++ +
Sbjct: 233 VLYFEGDEHHAYRILRAVKNRFGSTNEMGIFEMKQSGLKGVNNPSEMFLEERSTN---VP 289
Query: 418 GLAVAVIMDGSRSFLIEIQALCVSGSTVS---RHVNGIQASRADMIISVLMKQAGLKLQE 474
G + M+G+R LIE+QAL V+ +T + R GI +R ++++VL K+ LQ+
Sbjct: 290 GSTIVATMEGTRPLLIEVQAL-VTPTTFNNPRRMATGIDHNRLSLLMAVLEKKENYLLQQ 348
Query: 475 NAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKR 534
++ V GV LTE A DL+V A SSF + + +IGE+GL GE+R VSR+E+R
Sbjct: 349 QDAYIKVAGGVKLTEPAVDLSVIVATASSFKDKAVDGLDCYIGEVGLTGEVRRVSRIEQR 408
Query: 535 VSTVAKLGYRKCIVPKS 551
V AKLG+++ I+PK+
Sbjct: 409 VQEAAKLGFKRVIIPKN 425
>gi|125974290|ref|YP_001038200.1| DNA repair protein RadA [Clostridium thermocellum ATCC 27405]
gi|125714515|gb|ABN53007.1| DNA repair protein RadA [Clostridium thermocellum ATCC 27405]
Length = 454
Score = 331 bits (848), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 189/468 (40%), Positives = 276/468 (58%), Gaps = 34/468 (7%)
Query: 116 WVCSDCGYTDGQWWGMCRACESVGTMK---RYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+VC +CGY W G C +C T + +S G V V+PV +
Sbjct: 8 YVCQECGYESIGWMGKCPSCNQWNTFVEEIQEPKSKSRSGAV---------STNVKPVNI 58
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
++ ++ L+G+ E+ RVLGGG+V GSL+L+GGDPG+GKSTLLLQ+
Sbjct: 59 NDIEADTEER----YLTGI--KEMDRVLGGGIVKGSLILVGGDPGIGKSTLLLQIC---- 108
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+ + ++YVSGEES++QI RADR+ + L + S T+ + I + P +
Sbjct: 109 --DKIKTNAKILYVSGEESIKQIKLRADRLNVRNPNLLMLSETNFKVIQALSETERPDLI 166
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
+IDSIQT++ + + G + QV+E TS L+R AK NI +++ GHVTK G IAGPRVLE
Sbjct: 167 VIDSIQTMFNDELPSAPGSVSQVREITSGLMRIAKTLNIAIIIVGHVTKEGAIAGPRVLE 226
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EGE+ SYR+LR+VKNRFGST+E+G+FEM +GL V NPS + LSE+
Sbjct: 227 HMVDTVLYFEGERHLSYRILRAVKNRFGSTNEIGIFEMRDVGLVEVENPSSMLLSER--- 283
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMKQAGL 470
+E + G ++G+R LIEIQAL S R G+ +R ++++VL K+ G+
Sbjct: 284 TESVPGSVAVATLEGTRPMLIEIQALVCPTSFGMPRRMATGLDYNRITLLMAVLEKRVGM 343
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
+L ++NVV G+ + E A DL V AI SSF P+ IGE+GL GE+R VS+
Sbjct: 344 QLHNYDAYVNVVGGLKIDEPACDLGVVTAIASSFRNIPVDMDTVLIGEVGLTGEVRAVSQ 403
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINV 578
++KR+ ++G++ C+VP K + +QM+ I N+K V NV
Sbjct: 404 IDKRIREAVRIGFKNCVVPAGNMKVI-----KQMKDINNINVKFVENV 446
>gi|418320342|ref|ZP_12931703.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus
VCU006]
gi|418874543|ref|ZP_13428809.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus
CIGC93]
gi|365227528|gb|EHM68722.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus
VCU006]
gi|377771883|gb|EHT95636.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus
CIGC93]
Length = 454
Score = 331 bits (848), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 181/437 (41%), Positives = 267/437 (61%), Gaps = 24/437 (5%)
Query: 118 CSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRLLEVNK 177
C CGY +W G C C + M+ ++ V+ L K +++ ++
Sbjct: 10 CMACGYQSPKWMGKCPNCGAWNQMEEIIEKAANPKHGVKTKELAGKVQKLNSIK------ 63
Query: 178 GMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDL 237
P E RVLGGG+V GSLVLIGGDPG+GKSTLLLQ+ A L
Sbjct: 64 -----HETTPRVLTDSAEFNRVLGGGIVSGSLVLIGGDPGIGKSTLLLQICA------SL 112
Query: 238 GEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIIDSI 297
+ V+Y++GEES+ Q RA+R+ + EL + + TD+E I + V+ P L++DSI
Sbjct: 113 SQKKKVLYITGEESLSQTKLRAERLDEDSSELQVLAETDLEVIYQTVKEEQPDLLVVDSI 172
Query: 298 QTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDA 357
QT+Y ++ + G + QV+E T +L+ AK+ NI + GHVTK G IAGPR+LEH+VD
Sbjct: 173 QTIYHPEISSAPGSVSQVRESTQSLMNIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDT 232
Query: 358 VLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLA 417
VLY EG++ +YR+LR+VKNRFGST+E+G+FEM Q GL+ V+NPS++FL E+ ++ +
Sbjct: 233 VLYFEGDEHHAYRILRAVKNRFGSTNEMGIFEMKQSGLKGVNNPSEMFLEERSTN---VP 289
Query: 418 GLAVAVIMDGSRSFLIEIQALCVSGSTVS---RHVNGIQASRADMIISVLMKQAGLKLQE 474
G + M+G+R LIE+QAL V+ +T + R GI +R ++++VL K+ LQ+
Sbjct: 290 GSTIVATMEGTRPLLIEVQAL-VTPTTFNNPRRMATGIDHNRLSLLMAVLEKKENYLLQQ 348
Query: 475 NAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKR 534
++ V GV LTE A DL+V A SSF + + +IGE+GL GE+R VSR+E+R
Sbjct: 349 QDAYIKVAGGVKLTEPAVDLSVIVATASSFKDKAVDGLDCYIGEVGLTGEVRRVSRIEQR 408
Query: 535 VSTVAKLGYRKCIVPKS 551
V AKLG+++ I+PK+
Sbjct: 409 VQEAAKLGFKRVIIPKN 425
>gi|239636923|ref|ZP_04677921.1| DNA repair protein RadA [Staphylococcus warneri L37603]
gi|239597471|gb|EEQ79970.1| DNA repair protein RadA [Staphylococcus warneri L37603]
Length = 454
Score = 331 bits (848), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 187/473 (39%), Positives = 284/473 (60%), Gaps = 36/473 (7%)
Query: 118 CSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRLLEVNK 177
C CGY +W G C C + M+ +V++ P+ V+ E
Sbjct: 10 CMACGYQSPKWMGKCPNCGAWNQMEE----------IVEKAANPK-----HGVKSKEAAG 54
Query: 178 GMKQLD----WRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIAD 233
++ LD P E RVLGGG+V GSLVLIGGDPG+GKSTLLLQ+ A
Sbjct: 55 KVQTLDSIKNESTPRILTESKEFNRVLGGGIVNGSLVLIGGDPGIGKSTLLLQICA---- 110
Query: 234 VHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALI 293
L + V+Y++GEES+ Q RADR+ + +L + + TD+E I + V+ ++P L+
Sbjct: 111 --SLSQSKNVLYITGEESINQTKLRADRLEEDSSQLQVLAETDLEVIYQTVKDINPDLLV 168
Query: 294 IDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEH 353
+DSIQT+Y ++ + G + QV+E T +L+ AK+ NI + GHVTK G IAGPR+LEH
Sbjct: 169 VDSIQTIYHPEISSAPGSVSQVRESTQSLMNIAKQMNIATFIVGHVTKEGQIAGPRLLEH 228
Query: 354 IVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDS 413
+VD VLY EG++ +YR+LR+VKNRFGST+E+G+FEM Q GL+ V NPS++FL E+ ++
Sbjct: 229 MVDTVLYFEGDEHHAYRILRAVKNRFGSTNEMGIFEMKQSGLKGVLNPSEMFLEERSTN- 287
Query: 414 EFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVS---RHVNGIQASRADMIISVLMKQAGL 470
+ G + M+G+R LIE+QAL V+ +T + R GI +R ++++VL K+
Sbjct: 288 --VPGSTIVSTMEGTRPLLIEVQAL-VTPTTFNNPRRMATGIDHNRLSLLMAVLEKKENY 344
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ+ ++ V GV LTE A DL++ A SSF + + FIGE+GL GE+R V+R
Sbjct: 345 LLQQQDAYIKVAGGVKLTEPAVDLSIIVATASSFKDKAVDGLDCFIGEVGLTGEVRRVAR 404
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGF-EQMEFIGCKNLKEVINVVFTT 582
+E+RV AKLG+++ I+P++ ++ F E ++ +G ++ E + F +
Sbjct: 405 IEQRVQEAAKLGFKRVIIPQT---NIGGWTFPEGIKVVGVSSVHEALKYAFNS 454
>gi|385259960|ref|ZP_10038115.1| DNA repair protein RadA [Streptococcus sp. SK140]
gi|385192856|gb|EIF40249.1| DNA repair protein RadA [Streptococcus sp. SK140]
Length = 407
Score = 331 bits (848), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 183/420 (43%), Positives = 266/420 (63%), Gaps = 24/420 (5%)
Query: 163 KPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKST 222
KP ++ V + VN+ +++ E RVLGGG+VPGSLVLIGGDPG+GKST
Sbjct: 9 KPMKLAEVTSINVNRTKTEME-----------EFNRVLGGGVVPGSLVLIGGDPGIGKST 57
Query: 223 LLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVE 282
LLLQ++ ++ V V+YVSGEES +QI RA+R+ E +LY+ T+++ +
Sbjct: 58 LLLQVSTQLSQV------GTVLYVSGEESAQQIKLRAERLGNIDSEFYLYAETNMQSVRA 111
Query: 283 KVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKS 342
+V+ + P LIIDSIQT+ ++G G + QV+E T+ L++ AK NI + + GHVTK
Sbjct: 112 EVERIQPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELMQLAKTNNIAIFIVGHVTKE 171
Query: 343 GDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPS 402
G +AGPR+LEH+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS
Sbjct: 172 GTLAGPRMLEHMVDTVLYFEGERHHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPS 231
Query: 403 KIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMI 460
++FL E+ + G ++ V M+G+R L E+QAL R G+ +RA +I
Sbjct: 232 QVFLEERLDGA---TGSSIVVTMEGTRPILAEVQALVTPTMFGNAKRTTTGLDFNRASLI 288
Query: 461 ISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIG 520
++VL K+AGL LQ +L GV L E A DLAVA AI SS+ + P F+GE+G
Sbjct: 289 MAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKPTNPQECFVGELG 348
Query: 521 LGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
L GE+R V+R+E+R++ AKLG+ K VPK++ + ++++ IG + EV+ VF
Sbjct: 349 LTGEIRRVNRIEQRINEAAKLGFTKIYVPKNSLTGIKPP--KEIQVIGVTTIGEVLKKVF 406
>gi|372209916|ref|ZP_09497718.1| DNA repair protein RadA [Flavobacteriaceae bacterium S85]
Length = 451
Score = 331 bits (848), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 176/443 (39%), Positives = 265/443 (59%), Gaps = 28/443 (6%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T + C +CG +W G C C+ T+ + ++ W K
Sbjct: 5 KTVYFCQNCGTQHLKWMGQCSTCKEWNTLVEEVVSKEEKSD-----WKIDKSPR------ 53
Query: 173 LEVNKGMKQLDWRIPLSGLFG---NEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAA 229
+ N +K D +I F NE+ VLGGG+VPGS++L+GG+PG+GKSTL+LQ+A
Sbjct: 54 -KANTALKVKDIQIQNEKRFNAISNELNNVLGGGIVPGSVILLGGEPGIGKSTLMLQVA- 111
Query: 230 IIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSP 289
L V+YVSGEES QI RA+R+ E+ + + T+ + I + +Q P
Sbjct: 112 -------LSMQHKVLYVSGEESQTQIKLRAERVQNLNEDCLILTETNTQKIFKAIQLEHP 164
Query: 290 RALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPR 349
L+IDSIQT++ V SAG + Q+KE T+ L++FAK+T PVL+ GH+ K G IAGP+
Sbjct: 165 EILVIDSIQTLHTDYVESSAGSVSQIKETTTELIKFAKETGTPVLVIGHINKEGSIAGPK 224
Query: 350 VLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQ 409
+LEH+VD VL EG++ +YR+LR++KNRFGST ELG+FEM GL+ V NPS+I +S++
Sbjct: 225 ILEHMVDVVLQFEGDRNHTYRILRALKNRFGSTQELGIFEMRGGGLREVKNPSEILISKK 284
Query: 410 HSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQ 467
D L+G +++ ++G R +IE+QAL + T R G R +M+++VL K+
Sbjct: 285 EGD---LSGTSISATLEGMRPLMIEVQALVSTAVYGTPQRSATGYHLKRLNMLLAVLEKR 341
Query: 468 AGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRM 527
AG +L +FLN+ G+ + + A DLAV A+ SS + P+P AF E+GL GE+R
Sbjct: 342 AGFRLGAKDVFLNITGGIQVDDPAIDLAVVVAVLSSNEDEPVPQNYAFAAEVGLAGEIRP 401
Query: 528 VSRMEKRVSTVAKLGYRKCIVPK 550
V+R+E+R++ KLG+ K + K
Sbjct: 402 VNRVEQRIAEAEKLGFEKIFISK 424
>gi|313206308|ref|YP_004045485.1| DNA repair protein rada [Riemerella anatipestifer ATCC 11845 = DSM
15868]
gi|386321706|ref|YP_006017868.1| ATP-dependent serine protease [Riemerella anatipestifer RA-GD]
gi|442314502|ref|YP_007355805.1| putative ATP-dependent serine protease [Riemerella anatipestifer
RA-CH-2]
gi|312445624|gb|ADQ81979.1| DNA repair protein RadA [Riemerella anatipestifer ATCC 11845 = DSM
15868]
gi|325336249|gb|ADZ12523.1| Predicted ATP-dependent serine protease [Riemerella anatipestifer
RA-GD]
gi|441483425|gb|AGC40111.1| putative ATP-dependent serine protease [Riemerella anatipestifer
RA-CH-2]
Length = 449
Score = 330 bits (847), Expect = 9e-88, Method: Compositional matrix adjust.
Identities = 182/441 (41%), Positives = 263/441 (59%), Gaps = 26/441 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T + C +CG +W G C+ C T+ + ++T + L
Sbjct: 5 KTVYYCQNCGSQHSKWHGQCQNCGQWNTLVE---------EIAEKTTSKNYAGDFGRQHL 55
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
+ + + Q + RI E+ RVLGGG+V GS+ LIGG+PG+GKSTLLLQ+A
Sbjct: 56 INIIEVETQAEQRIKTPS---EELNRVLGGGIVLGSVTLIGGEPGIGKSTLLLQLA---- 108
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMM-IATEELFLYSSTDIEDIVEKVQPLSPRA 291
L ++YVSGEES QI RADR+ + FLY+ T IE I+ + + L P
Sbjct: 109 ----LKMKKKILYVSGEESASQIKMRADRLTELQNPNCFLYTETSIEKILHEAKKLQPDF 164
Query: 292 LIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVL 351
+I+DSIQT++ + + S G + Q++EC S +++FAK TN PV L GH+TK G IAGP+VL
Sbjct: 165 MIVDSIQTLHSQVMESSPGTVSQIRECASEVIKFAKATNTPVFLVGHITKDGQIAGPKVL 224
Query: 352 EHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHS 411
EH+VD VL +G+K +RLLR+ KNRFGST E+G++EM GL+ + NPS++ ++++
Sbjct: 225 EHMVDVVLNFDGDKNHLFRLLRANKNRFGSTAEIGIYEMISAGLKEIKNPSEVLITKK-- 282
Query: 412 DSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAG 469
SE +G AVAV ++G+R L+EIQAL + T R G A R +M+++VL K++G
Sbjct: 283 -SEEFSGNAVAVTLEGNRPMLLEIQALVSTAVYGTPQRSSTGFDAKRLNMLLAVLEKRSG 341
Query: 470 LKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVS 529
+L +FLN+ G+ + A DLAV AAI SS + + F GEIGL GE+R V
Sbjct: 342 FQLGAKDVFLNITGGIKTDDPALDLAVVAAILSSNEDVAVSEHYCFAGEIGLSGEIRPVP 401
Query: 530 RMEKRVSTVAKLGYRKCIVPK 550
++EKR+S KLGY K V K
Sbjct: 402 QIEKRISEAEKLGYHKIFVSK 422
>gi|319946135|ref|ZP_08020382.1| DNA repair protein RadA [Streptococcus australis ATCC 700641]
gi|417920479|ref|ZP_12563985.1| DNA repair protein RadA [Streptococcus australis ATCC 700641]
gi|319747707|gb|EFV99953.1| DNA repair protein RadA [Streptococcus australis ATCC 700641]
gi|342829228|gb|EGU63587.1| DNA repair protein RadA [Streptococcus australis ATCC 700641]
Length = 407
Score = 330 bits (847), Expect = 9e-88, Method: Compositional matrix adjust.
Identities = 180/389 (46%), Positives = 251/389 (64%), Gaps = 13/389 (3%)
Query: 195 EVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQ 254
E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ ++ V V+YVSGEES +Q
Sbjct: 30 EFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSQV------GTVLYVSGEESAQQ 83
Query: 255 IGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQ 314
I RA+R+ E +LY+ T+++ + +V+ L P LIIDSIQT+ ++G G + Q
Sbjct: 84 IKLRAERLGDIDSEFYLYAETNMQSVRAEVERLQPNFLIIDSIQTIMSPEISGVQGSVSQ 143
Query: 315 VKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRS 374
V+E T+ L++ AK NI + + GHVTK G +AGPR+LEH+VD VLY EGE+ ++R+LR+
Sbjct: 144 VREVTAELMQLAKTNNIAIFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGERHHTFRILRA 203
Query: 375 VKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIE 434
VKNRFGST+E+G+FEM GL V NPS++FL E+ + G A+ V M+GSR L E
Sbjct: 204 VKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGA---TGSAIVVTMEGSRPILAE 260
Query: 435 IQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAG 492
+QAL R G+ +R +I++VL K+ GL LQ +L GV L E A
Sbjct: 261 VQALVTPTVFGNAKRTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAI 320
Query: 493 DLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSA 552
DLAVA AI SS+ + P AFIGEIGL GE+R V+R+E+R++ AKLG+ K PK++
Sbjct: 321 DLAVAVAIASSYKDLPTNPQEAFIGEIGLTGEIRRVTRIEQRINEAAKLGFTKIYAPKNS 380
Query: 553 EKSLATLGFEQMEFIGCKNLKEVINVVFT 581
+ + ++ I + EV+ VF+
Sbjct: 381 LQGITIP--NGIQVIAVSTVGEVLKKVFS 407
>gi|281419886|ref|ZP_06250885.1| DNA repair protein RadA [Prevotella copri DSM 18205]
gi|281406013|gb|EFB36693.1| DNA repair protein RadA [Prevotella copri DSM 18205]
Length = 494
Score = 330 bits (847), Expect = 9e-88, Method: Compositional matrix adjust.
Identities = 184/478 (38%), Positives = 278/478 (58%), Gaps = 56/478 (11%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWL----------- 160
++ +VCS+CG +W G C +C T K +D G + +
Sbjct: 4 DKIAFVCSNCGQESAKWMGKCPSCGQWNTFKEIRIA-ADSGSQAAKNAVMTMRHGGAATM 62
Query: 161 ---PQKPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPG 217
+ P++L +++ +D P + E+ RVLGGG+VPGS+ L+GG+PG
Sbjct: 63 FGGQHSEHDAAPMKLRDISA----IDE--PRIDMRDEELNRVLGGGMVPGSITLLGGEPG 116
Query: 218 VGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRM-----MI-------- 264
+GKSTL LQ + D ++YVSGEES QI RADR+ M+
Sbjct: 117 IGKSTLTLQTILNMTD-------RRILYVSGEESAHQIKLRADRLAKGQAMLREGSSADT 169
Query: 265 ----------ATEELFLYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQ 314
A + + + T +E I +Q ++P+ ++IDSIQT+ V S G + Q
Sbjct: 170 LKTASLSSEGAFDHITVLCETQLEKIFSHIQEVAPQLIVIDSIQTIAAEEVDSSPGSVSQ 229
Query: 315 VKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRS 374
V+EC ++LLRFAK + IPV+L GH+ K G +AGP++LEHIVD V+ EG++ YR+LRS
Sbjct: 230 VRECAASLLRFAKTSGIPVILIGHINKEGTLAGPKILEHIVDTVIQFEGDQHYMYRILRS 289
Query: 375 VKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIE 434
+KNRFGST ELG++EM Q GL+ VSNPS++ L+E H + L+G+A++ ++G R FL+E
Sbjct: 290 IKNRFGSTSELGIYEMMQGGLRQVSNPSELLLTEDH---DGLSGVAISAAIEGVRPFLVE 346
Query: 435 IQALCVSGS--TVSRHVNGIQASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAG 492
QAL + + T R G R +M+++VL K+ G KL + +FLN+ G+ +T+ A
Sbjct: 347 TQALVSTAAYGTPQRSATGFDQRRLNMLLAVLEKRVGFKLMQKDVFLNIAGGLRVTDPAM 406
Query: 493 DLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPK 550
DL+V AA+ SS ++ PI G GE+GL GE+R VSR+E+R++ KLG++ I+PK
Sbjct: 407 DLSVLAAVLSSNVDTPIEQGWCMAGEVGLSGEVRPVSRIEQRIAEAEKLGFQHIIIPK 464
>gi|418561539|ref|ZP_13126027.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus 21262]
gi|371977396|gb|EHO94667.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus 21262]
Length = 454
Score = 330 bits (847), Expect = 9e-88, Method: Compositional matrix adjust.
Identities = 181/437 (41%), Positives = 267/437 (61%), Gaps = 24/437 (5%)
Query: 118 CSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRLLEVNK 177
C CGY +W G C C + M+ ++ V+ L K +++ ++
Sbjct: 10 CMACGYQSPKWMGKCPNCGAWNQMEEIVEKAANPKHGVKTKELAGKVQKLNSIK------ 63
Query: 178 GMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDL 237
P E RVLGGG+V GSLVLIGGDPG+GKSTLLLQ+ A L
Sbjct: 64 -----HETTPRVLTDSAEFNRVLGGGIVSGSLVLIGGDPGIGKSTLLLQICA------SL 112
Query: 238 GEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIIDSI 297
+ V+Y++GEES+ Q RA+R+ + EL + + TD+E I + V+ P L++DSI
Sbjct: 113 SQKKKVLYITGEESLSQTKLRAERLDEDSSELQVLAETDLEVIYQTVKEEQPDLLVVDSI 172
Query: 298 QTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDA 357
QT+Y ++ + G + QV+E T +L+ AK+ NI + GHVTK G IAGPR+LEH+VD
Sbjct: 173 QTIYHPEISSAPGSVSQVRESTQSLMNIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDT 232
Query: 358 VLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLA 417
VLY EG++ +YR+LR+VKNRFGST+E+G+FEM Q GL+ V+NPS++FL E+ ++ +
Sbjct: 233 VLYFEGDEHHAYRILRAVKNRFGSTNEMGIFEMKQSGLKGVNNPSEMFLEERSTN---VP 289
Query: 418 GLAVAVIMDGSRSFLIEIQALCVSGSTVS---RHVNGIQASRADMIISVLMKQAGLKLQE 474
G + M+G+R LIE+QAL V+ +T + R GI +R ++++VL K+ LQ+
Sbjct: 290 GSTIVATMEGTRPLLIEVQAL-VTPTTFNNPRRMATGIDHNRLSLLMAVLEKKENYLLQQ 348
Query: 475 NAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKR 534
++ V GV LTE A DL+V A SSF + + +IGE+GL GE+R VSR+E+R
Sbjct: 349 QDAYIKVAGGVKLTEPAVDLSVIVATASSFKDKAVDGLDCYIGEVGLTGEVRRVSRIEQR 408
Query: 535 VSTVAKLGYRKCIVPKS 551
V AKLG+++ I+PK+
Sbjct: 409 VQEAAKLGFKRVIIPKN 425
>gi|294850301|ref|ZP_06791035.1| DNA repair protein RadA [Staphylococcus aureus A9754]
gi|294822813|gb|EFG39248.1| DNA repair protein RadA [Staphylococcus aureus A9754]
Length = 454
Score = 330 bits (847), Expect = 9e-88, Method: Compositional matrix adjust.
Identities = 179/436 (41%), Positives = 265/436 (60%), Gaps = 22/436 (5%)
Query: 118 CSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRLLEVNK 177
C CGY +W G C C + M+ ++ V+ L K +++ ++
Sbjct: 10 CMACGYQSPKWMGKCPNCGAWNQMEEIVEKAANPKHGVKTKELAGKVQKLNSIK------ 63
Query: 178 GMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDL 237
P E RVLGGG+V GSLVLIGGDPG+GKSTLLLQ+ A L
Sbjct: 64 -----HETTPRVLTDSAEFNRVLGGGIVSGSLVLIGGDPGIGKSTLLLQICA------SL 112
Query: 238 GEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIIDSI 297
+ V+Y++GEES+ Q RA+R+ + EL + + TD+E I + V+ P L++DSI
Sbjct: 113 SQKKKVLYITGEESLSQTKLRAERLDEDSSELQVLAETDLEVIYQTVKEEQPDLLVVDSI 172
Query: 298 QTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDA 357
QT+Y ++ + G + QV+E T +L+ AK+ NI + GHVTK G IAGPR+LEH+VD
Sbjct: 173 QTIYHPEISSAPGSVSQVRESTQSLMNIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDT 232
Query: 358 VLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLA 417
VLY EG++ +YR+LR+VKNRFGST+E+G+FEM Q GL+ V+NPS++FL E+ ++ +
Sbjct: 233 VLYFEGDEHHAYRILRAVKNRFGSTNEMGIFEMKQSGLKGVNNPSEMFLEERSTN---VP 289
Query: 418 GLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVLMKQAGLKLQEN 475
G + M+G+R LIE+QAL ++ + R GI +R ++++VL K+ LQ+
Sbjct: 290 GSTIVATMEGTRPLLIEVQALVTPMTFNNPRRMATGIDHNRLSLLMAVLEKKENYLLQQQ 349
Query: 476 AIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRV 535
++ V GV LTE A DL+V A SSF + + +IGE+GL GE+R VSR+E+RV
Sbjct: 350 DAYIKVAGGVKLTEPAVDLSVIVATASSFKDKAVDGLDCYIGEVGLTGEVRRVSRIEQRV 409
Query: 536 STVAKLGYRKCIVPKS 551
AKLG+++ I+PK+
Sbjct: 410 QEAAKLGFKRVIIPKN 425
>gi|189502514|ref|YP_001958231.1| DNA repair protein RadA [Candidatus Amoebophilus asiaticus 5a2]
gi|189497955|gb|ACE06502.1| hypothetical protein Aasi_1168 [Candidatus Amoebophilus asiaticus
5a2]
Length = 463
Score = 330 bits (847), Expect = 9e-88, Method: Compositional matrix adjust.
Identities = 183/477 (38%), Positives = 277/477 (58%), Gaps = 31/477 (6%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRAC-------ESVGTMKRYSAGESDEGPVVQRTWLPQ 162
KA +T ++C +CG + G C AC E V K + + E Q + P
Sbjct: 2 KAYKTTYICQNCGAQYAKQQGKCNACLAWNTIVEEVTQKKANLSSPTWETFSYQHSTTPS 61
Query: 163 KPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKST 222
P+++ + NK + E RVLGGG+V GSLVLIGG+PG+GKST
Sbjct: 62 HPKKLHEITHDAQNKII-----------CTDKEFNRVLGGGIVAGSLVLIGGEPGIGKST 110
Query: 223 LLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVE 282
LLLQ+A +LG V+YVSGEES QI RA RM ++ ++ + ++ I++
Sbjct: 111 LLLQIAL------NLG-TYKVLYVSGEESEAQIKMRASRMNHTSDNCYILNEISLDSILQ 163
Query: 283 KVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKS 342
L P ++IDSIQT+Y + + +AG + QV+ T+ L+ +AK TN + L GH+TK
Sbjct: 164 HAVQLRPDIIVIDSIQTIYTQQIESAAGSVAQVRAATAILMHYAKTTNTSIFLIGHITKE 223
Query: 343 GDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPS 402
G +AGP+VLEH+VD VL EG++ +YR++R++KNRFG+T ELG++EM GLQ VSNPS
Sbjct: 224 GTLAGPKVLEHMVDTVLQFEGDRHLTYRIVRTIKNRFGATSELGIYEMRHNGLQEVSNPS 283
Query: 403 KIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMI 460
+ LS++ L+G+A ++G+RS L+E QAL + T R G + R +M+
Sbjct: 284 ALLLSQREG---HLSGIATGAFIEGNRSLLVEAQALVSPATYGTPQRATTGFDSKRLNML 340
Query: 461 ISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIG 520
++VL K+A L+L + +FLN+ G+ + + A DLAV AI SS + IP F E+G
Sbjct: 341 LAVLEKRARLRLAIHDVFLNIAGGIKVEDPALDLAVCIAIMSSLKDIIIPTNYCFAAEVG 400
Query: 521 LGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVIN 577
LGGE+R V+R+E+R++ ++LG+ + V KSL + + + + EV+N
Sbjct: 401 LGGEVRAVNRIEQRIAEASRLGFEQIFVANHNYKSLNHKNY-TININSIETINEVVN 456
>gi|313884611|ref|ZP_07818371.1| DNA repair protein RadA [Eremococcus coleocola ACS-139-V-Col8]
gi|312620155|gb|EFR31584.1| DNA repair protein RadA [Eremococcus coleocola ACS-139-V-Col8]
Length = 460
Score = 330 bits (847), Expect = 9e-88, Method: Compositional matrix adjust.
Identities = 184/465 (39%), Positives = 274/465 (58%), Gaps = 18/465 (3%)
Query: 118 CSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRLLEVNK 177
C CGY +W G C C + M+ S P QRT + Q R ++++
Sbjct: 10 CMACGYESPKWLGKCPNCGAWNQMEEQLVFSS---PSQQRTRSLRSDAANQLGRAYKLDE 66
Query: 178 GMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDL 237
Q + R+ E RVLGGGLV GSLVLIGGDPG+GKSTLLLQ++ +
Sbjct: 67 IQAQAEDRVQTQF---QEFDRVLGGGLVAGSLVLIGGDPGIGKSTLLLQVSTQLVKA--- 120
Query: 238 GEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIIDSI 297
V+YVSGEES+ QI RA R+ + E+L+L + TD++ I+ + + P ++IDSI
Sbjct: 121 --GQRVLYVSGEESLSQIKMRAQRLNVKQEDLYLMAETDLDQIIAEAARIQPDTVMIDSI 178
Query: 298 QTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDA 357
QT+ + G AG + QV++ T++L+R AK I + + GHVTK G IAGPR+LEH+VD
Sbjct: 179 QTMQVADHNGVAGSVGQVRQATASLMRLAKDNRIAIFIVGHVTKEGAIAGPRMLEHMVDT 238
Query: 358 VLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLA 417
VLY EGEK++ +R+LR+VKNRFGST ELGVF+M GLQ V+NPS++FL E+ + +
Sbjct: 239 VLYFEGEKYNRFRILRAVKNRFGSTHELGVFQMLDTGLQEVANPSQLFLEERIAGA---V 295
Query: 418 GLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGLKLQEN 475
G V ++G+R+ L E+Q+L R +G+ R ++++V+ K GL +Q
Sbjct: 296 GSTVVASLEGTRTILAEVQSLMTPTVFGNAKRTASGVDYQRVSLLLAVMEKHCGLLVQNQ 355
Query: 476 AIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRV 535
F GV L E A DLA+A +I SS+ + F+GEIGL GE+R VS++ +R+
Sbjct: 356 DAFFKTTGGVKLDEPAIDLAIAISIASSYWDKATKVDDCFVGEIGLTGEIRRVSQINERI 415
Query: 536 STVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
KLG+++ +P++ L ++E + K +++ +N+VF
Sbjct: 416 KEANKLGFKRIFIPQNNYNDLDK--DVEIELVPVKTIRQAVNLVF 458
>gi|219872055|ref|YP_002476430.1| DNA repair protein RadA [Haemophilus parasuis SH0165]
gi|219692259|gb|ACL33482.1| DNA repair protein RadA [Haemophilus parasuis SH0165]
Length = 458
Score = 330 bits (847), Expect = 9e-88, Method: Compositional matrix adjust.
Identities = 189/481 (39%), Positives = 282/481 (58%), Gaps = 37/481 (7%)
Query: 109 GKANRTNWVCSDCGYTDGQWWGMCRAC---ESVGTMKRYSAGESDE----GPVVQRTWLP 161
KA +T +VCSDCG +W G C+AC ++ ++ SA ES G + T
Sbjct: 2 AKAPKTAYVCSDCGAEYARWMGQCKACLAWNTISEVRLISAKESKSDRLSGYAGETTGKI 61
Query: 162 QKPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKS 221
Q+ ++ + + G +LD RVLGGG+VPGS +LIGG PG GKS
Sbjct: 62 QRLSDIDLQEVPRFSSGFYELD--------------RVLGGGIVPGSAILIGGHPGAGKS 107
Query: 222 TLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIV 281
TLLLQ+ L + P +YV+GEES++Q+ RA+R+ + T+ L + S T +E I
Sbjct: 108 TLLLQVMC------GLSQSVPTLYVTGEESLQQVAMRANRLGLPTDNLKMLSETSVEHIC 161
Query: 282 EKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTK 341
P+ ++IDSIQ ++L + S G + QV+EC + L R+AK + +++ GHVTK
Sbjct: 162 NLADQEKPKLMVIDSIQVMHLSDIQSSPGSVAQVRECAAFLTRYAKTRQVAIIMVGHVTK 221
Query: 342 SGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNP 401
G +AGP+VLEH +DA L +EGE S YR LRS KNRFG+ +ELGVF M++ GL+ V NP
Sbjct: 222 DGTLAGPKVLEHAIDASLLLEGEADSRYRTLRSQKNRFGAVNELGVFAMTEQGLKEVKNP 281
Query: 402 SKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVS---RHVNGIQASRAD 458
S IFLS E +G +V V+ +G+R L+EIQAL V S ++ R G++ +R
Sbjct: 282 SAIFLSRSE---EQTSGSSVMVLWEGTRPLLVEIQAL-VDHSMLANPRRVAVGLEQNRLS 337
Query: 459 MIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGE 518
++++VL + GL++ + +F+NVV GV +TET+ DLA+ A+ SSF P+P + GE
Sbjct: 338 LLLAVLHRHGGLQMSDQDVFVNVVGGVKVTETSADLALLLALISSFRNRPLPQDLVVFGE 397
Query: 519 IGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINV 578
+GL GE+R V ++R+S K G+++ I+P A G ME K L + +++
Sbjct: 398 VGLAGEIRPVPSGQERISEATKHGFKRAIIPHGNAPKKAIKG---MEVFTVKKLSDALDI 454
Query: 579 V 579
V
Sbjct: 455 V 455
>gi|419766172|ref|ZP_14292386.1| DNA repair protein RadA [Streptococcus mitis SK579]
gi|383354388|gb|EID31954.1| DNA repair protein RadA [Streptococcus mitis SK579]
Length = 433
Score = 330 bits (847), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 185/421 (43%), Positives = 265/421 (62%), Gaps = 25/421 (5%)
Query: 165 EEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLL 224
E+ +P++L EV + + E RVLGGG+VPGSLVLIGGDPG+GKSTLL
Sbjct: 32 EKTKPMKLAEVT------SINVHRTKTEMEEFNRVLGGGVVPGSLVLIGGDPGIGKSTLL 85
Query: 225 LQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKV 284
LQ++ ++ V V+YVSGEES +QI RA+R+ E +LY+ T+++ + +V
Sbjct: 86 LQVSTQLSQV------GTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSVRAEV 139
Query: 285 QPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGD 344
+ + P LIIDSIQT+ ++G G + QV+E T+ L++ AK NI + + GHVTK G
Sbjct: 140 ERIQPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELMQLAKTNNIAIFIVGHVTKEGT 199
Query: 345 IAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKI 404
+AGPR+LEH+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS++
Sbjct: 200 LAGPRMLEHMVDTVLYFEGERHHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQV 259
Query: 405 FLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIIS 462
FL E+ + G ++ V M+G+R L E+QAL R G+ +RA +I++
Sbjct: 260 FLEERLDGA---TGSSIVVTMEGTRPILAEVQALVTPTMFGNAKRTTTGLDFNRASLIMA 316
Query: 463 VLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLG 522
VL K+AGL LQ +L GV L E A DLAVA AI SS+ + P F+GE+GL
Sbjct: 317 VLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKPTNPQECFVGELGLT 376
Query: 523 GELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFE---QMEFIGCKNLKEVINVV 579
GE+R V+R+E+R++ AKLG+ K VPK+ + G E ++ IG ++EV+ V
Sbjct: 377 GEIRRVNRIEQRINEAAKLGFTKIYVPKN-----SLTGIEPPKSIQVIGVTTIQEVLKKV 431
Query: 580 F 580
F
Sbjct: 432 F 432
>gi|345880852|ref|ZP_08832389.1| DNA repair protein RadA [Prevotella oulorum F0390]
gi|343921633|gb|EGV32347.1| DNA repair protein RadA [Prevotella oulorum F0390]
Length = 460
Score = 330 bits (847), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 186/461 (40%), Positives = 279/461 (60%), Gaps = 29/461 (6%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQ--- 168
++ +VCS+CG +W G C AC T K +D G + ++ +++
Sbjct: 4 DKIAYVCSNCGQESAKWIGKCPACGQWNTYKEIRIA-ADSGSMAAKSAAHAVRNKLEHHN 62
Query: 169 -PVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQM 227
P L E++ Q + RI + E+ RVLGGGLVPGS+VL+GG+PG+GKSTL LQ
Sbjct: 63 KPQFLHEISA---QDEPRIDMQDA---ELNRVLGGGLVPGSIVLLGGEPGIGKSTLTLQT 116
Query: 228 AAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPL 287
+ + ++YVSGEES QI RA+R+ + + T +E+I + ++
Sbjct: 117 ILRMQN-------RDILYVSGEESAHQIKMRAERIG-GNGSVQVLCETSLENIFDSIKEA 168
Query: 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAG 347
P +IIDSIQT+ V S G + QV+EC SALLRFAK + IPV+L GH+ K G +AG
Sbjct: 169 KPELVIIDSIQTISTSEVESSPGSITQVRECASALLRFAKTSGIPVILIGHINKEGTLAG 228
Query: 348 PRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLS 407
P++LEHIVD V+ EG++ YR+LR++KNRFGST ELG++EM Q GL+ VSNPS++ L+
Sbjct: 229 PKILEHIVDTVIQFEGDQHYMYRILRAIKNRFGSTSELGIYEMRQDGLRPVSNPSELLLT 288
Query: 408 EQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLM 465
+ H E L+G+A++ ++G R FL+E QAL S + T R G R +M+++VL
Sbjct: 289 QDH---EGLSGVAISAAIEGVRPFLVETQALVSSAAYGTPQRTATGFDQRRLNMLLAVLE 345
Query: 466 KQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGEL 525
K+ G KL + +F+N+ G+ +T+ A DL+V A+ SS ++ I G GE+GL GE+
Sbjct: 346 KRVGFKLMQKDVFINIAGGLRVTDLAMDLSVITAVLSSNVDTAIEAGWCMAGEVGLSGEV 405
Query: 526 RMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEF 566
R VSR+E+R++ KLG+ I+P K GF++ ++
Sbjct: 406 RPVSRIEQRIAEAEKLGFTHMIIPAYNLK-----GFDKQKY 441
>gi|418192733|ref|ZP_12829229.1| DNA repair protein RadA [Streptococcus pneumoniae GA47439]
gi|353860880|gb|EHE40819.1| DNA repair protein RadA [Streptococcus pneumoniae GA47439]
Length = 420
Score = 330 bits (847), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 184/421 (43%), Positives = 267/421 (63%), Gaps = 26/421 (6%)
Query: 163 KPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKST 222
KP ++ V + VN+ +++ E RVLGGG+VPGSLVLIGGDPG+GKST
Sbjct: 22 KPMKLAEVTSINVNRTKTEME-----------EFNRVLGGGVVPGSLVLIGGDPGIGKST 70
Query: 223 LLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVE 282
LLLQ++ ++ V V+YVSGEES +QI RA+R+ +LY+ T+++ +
Sbjct: 71 LLLQVSTQLSQV------GTVLYVSGEESAQQIKLRAERLGDIDSGFYLYAETNMQSVRA 124
Query: 283 KVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKS 342
+V+ + P LIIDSIQT+ ++G G + QV+E T+ L++ AK NI + + GHVTK
Sbjct: 125 EVERIQPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELMQLAKTNNIAIFIVGHVTKE 184
Query: 343 GDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPS 402
G +AGPR+LEH+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS
Sbjct: 185 GTLAGPRMLEHMVDTVLYFEGERHHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPS 244
Query: 403 KIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMI 460
++FL E+ + G ++ V M+G+R L E+QAL R G+ +RA +I
Sbjct: 245 QVFLEERLDGA---TGSSIVVTMEGTRPILAEVQALVTPTMFGNAKRTTTGLDFNRASLI 301
Query: 461 ISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIG 520
++VL K+AGL LQ +L GV L E A DLAVA AI SS+ + P F+GE+G
Sbjct: 302 MAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKPTNPQECFVGELG 361
Query: 521 LGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGF-EQMEFIGCKNLKEVINVV 579
L GE+R V+R+E+R++ AKLG+ K VPK+ SL + ++++ IG ++EV+ V
Sbjct: 362 LTGEIRRVNRIEQRINEAAKLGFTKIYVPKN---SLTGITLPKEIQVIGVTTIQEVLKKV 418
Query: 580 F 580
F
Sbjct: 419 F 419
>gi|345869162|ref|ZP_08821125.1| DNA repair protein RadA [Bizionia argentinensis JUB59]
gi|344046646|gb|EGV42307.1| DNA repair protein RadA [Bizionia argentinensis JUB59]
Length = 453
Score = 330 bits (847), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 178/446 (39%), Positives = 271/446 (60%), Gaps = 20/446 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T + C +CG +W G C +C+ T+ E + P P + R
Sbjct: 5 KTTFFCQNCGSQYSKWQGQCTSCKEWNTISE----EVLQKPEKSDWKTPSSTSTKRVSRP 60
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
L +N+ + R+ E RVLGGG+VPGSL L+GG+PG+GKSTLLLQ+A
Sbjct: 61 LLINEIDVSQEARMQTEDA---EFNRVLGGGIVPGSLTLLGGEPGIGKSTLLLQIA---- 113
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
L P +Y+SGEES +QI RA+R+ ++ ++ + T ++I ++++ L P +
Sbjct: 114 ----LKLPYKTLYISGEESQKQIKMRAERINPSSNNCYILTETKTQNIFKQIEELEPDIV 169
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
++DSIQT++ + S+G + Q+KECT+ L++FAK+T PV+L GH+TK G+IAGP++LE
Sbjct: 170 VVDSIQTLHSDYIESSSGSISQIKECTTELIKFAKETATPVILIGHITKDGNIAGPKILE 229
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VL EG++ +R+LR+ KNRFGST+ELG++EM GL+ VSNPS+I ++++
Sbjct: 230 HMVDTVLQFEGDRNHVFRILRANKNRFGSTNELGIYEMQGSGLREVSNPSEILITQK--- 286
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
E L+G A+A ++G R LIE+QAL + T R G A R +M+++VL K+AG
Sbjct: 287 DEELSGNAIAATLEGMRPLLIEVQALVSTAVYGTPQRSATGFNAKRLNMLLAVLEKRAGF 346
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
+L +FLN+ G+ + + A DLAV AAI SS + +P F E+GL GE+R V R
Sbjct: 347 RLGAKDVFLNITGGITVDDPAMDLAVVAAILSSNEDEALPKDYCFAAEVGLSGEIRPVQR 406
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSL 556
+E+R+ KLG+ V K + SL
Sbjct: 407 VEQRIVEAEKLGFSTIFVSKYNKISL 432
>gi|371776348|ref|ZP_09482670.1| DNA repair protein RadA [Anaerophaga sp. HS1]
Length = 456
Score = 330 bits (847), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 187/445 (42%), Positives = 270/445 (60%), Gaps = 27/445 (6%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKR---YSAGESDEGPVVQRTWLPQKPEEVQ 168
++T +VC +CG +W G C AC T+ + G + + KP V
Sbjct: 4 SKTIYVCQNCGAEFPKWMGKCSACGEWNTLTEEVTITGKNKTSGRIATHSTGRHKPLPVS 63
Query: 169 PVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMA 228
V + +V + +D I E+ RVLGGGLVPGSLVL+GG+PG+GKSTL+LQMA
Sbjct: 64 SVSVEDVPR----IDTCI-------GELNRVLGGGLVPGSLVLLGGEPGIGKSTLVLQMA 112
Query: 229 AIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMM-IATEELFLYSSTDIEDIVEKVQPL 287
+ ++YVSGEES QI RA+R+ + + FL T +E + ++ +
Sbjct: 113 LKLFS-------KKILYVSGEESPRQIKLRAERLSNVDGDHCFLVGETSLEQTIVHIENI 165
Query: 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAG 347
+P +IIDSIQT+ + G + Q++ECT ++LR AK+ NIPVLL GH+ K G +AG
Sbjct: 166 NPDLVIIDSIQTMEREALESIPGSVSQIRECTVSILRVAKEKNIPVLLIGHINKEGSLAG 225
Query: 348 PRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLS 407
P+VLEHIVD VL EG+ + YR+LR++KNRFGST E+G+FEM GL+ V NPS++ L
Sbjct: 226 PKVLEHIVDVVLQFEGDGQNMYRILRAIKNRFGSTSEIGIFEMHGEGLREVINPSEMLLG 285
Query: 408 EQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLM 465
H + E L+G+A+A ++G R FLIE+QAL + + T R G R +M+++VL
Sbjct: 286 --HHEEE-LSGIAIAAALEGIRPFLIEVQALASTAAYGTPQRTSTGFDLRRLNMLLAVLE 342
Query: 466 KQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGEL 525
K+AG KL +FLN+ G +++ A DLAV A+I SS + IP+ I GE+GL GE+
Sbjct: 343 KRAGFKLAAKDVFLNIAGGFKVSDPAVDLAVVASILSSNTDLVIPHKICLTGEVGLSGEI 402
Query: 526 RMVSRMEKRVSTVAKLGYRKCIVPK 550
R V R+E+RV+ KLG+ +VP+
Sbjct: 403 RPVGRIEQRVTEAEKLGFESIVVPR 427
>gi|314937169|ref|ZP_07844516.1| DNA repair protein RadA [Staphylococcus hominis subsp. hominis C80]
gi|313655788|gb|EFS19533.1| DNA repair protein RadA [Staphylococcus hominis subsp. hominis C80]
Length = 447
Score = 330 bits (847), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 182/437 (41%), Positives = 271/437 (62%), Gaps = 30/437 (6%)
Query: 121 CGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQ---KPEEVQPVRLLEVNK 177
CGY +W G C C + M+ ++++T P+ K +E Q ++ ++N
Sbjct: 3 CGYQSPKWMGKCPNCGAWNQMEE----------IIEKTSNPKHGVKTKETQ-AKVQKLNS 51
Query: 178 GMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDL 237
+ R+ E RVLGGG+V GSLVLIGGDPG+GKSTLLLQ+ A L
Sbjct: 52 IKHETTPRVQTDS---KEFNRVLGGGIVSGSLVLIGGDPGIGKSTLLLQICA------SL 102
Query: 238 GEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIIDSI 297
+ V+Y++GEES+ Q RADR+ + L + + TD+E I + V+ P L++DSI
Sbjct: 103 SQKLNVLYITGEESLNQTKLRADRLEEDSSNLNVLAETDLEVIHQTVEQERPDILVVDSI 162
Query: 298 QTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDA 357
QT+Y ++ + G + QV+E T +L+ AK+ NI + GHVTK G IAGPR+LEH+VD
Sbjct: 163 QTIYHPEISSAPGSVSQVRESTQSLMNIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDT 222
Query: 358 VLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLA 417
VLY EG++ +YR+LR+VKNRFGST+E+GVFEM Q GL+ V NPS++FL E+ ++ +
Sbjct: 223 VLYFEGDEHHAYRILRAVKNRFGSTNEMGVFEMKQSGLKGVQNPSEMFLEERSTN---VP 279
Query: 418 GLAVAVIMDGSRSFLIEIQALCVSGSTVS---RHVNGIQASRADMIISVLMKQAGLKLQE 474
G + M+G+R LIE+Q+L V+ +T + R GI +R ++++VL K+ LQ+
Sbjct: 280 GSTIVATMEGTRPLLIEVQSL-VTPTTFNNPRRMATGIDHNRLSLLMAVLEKKENYLLQQ 338
Query: 475 NAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKR 534
++ V GV LTE A DL++ A SSF + + +IGE+GL GE+R VSR+E+R
Sbjct: 339 QDAYIKVAGGVRLTEPAVDLSIIVATASSFKDKAVDGLDCYIGEVGLTGEVRRVSRIEQR 398
Query: 535 VSTVAKLGYRKCIVPKS 551
V AKLG+++ I+PK+
Sbjct: 399 VQEAAKLGFKRVIIPKT 415
>gi|307706902|ref|ZP_07643703.1| DNA repair protein RadA [Streptococcus mitis SK321]
gi|307617694|gb|EFN96860.1| DNA repair protein RadA [Streptococcus mitis SK321]
Length = 397
Score = 330 bits (847), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 178/388 (45%), Positives = 254/388 (65%), Gaps = 13/388 (3%)
Query: 195 EVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQ 254
E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ ++ V V+YVSGEES +Q
Sbjct: 20 EFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSQV------GTVLYVSGEESAQQ 73
Query: 255 IGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQ 314
I RA+R+ E +LY+ T+++ + +V+ + P LIIDSIQT+ ++G G + Q
Sbjct: 74 IKLRAERLGDIDSEFYLYAETNMQSVRAEVERIQPDFLIIDSIQTIMSPEISGVQGSVSQ 133
Query: 315 VKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRS 374
V+E T+ L++ AK NI + + GHVTK G +AGPR+LEH+VD VLY EGE+ ++R+LR+
Sbjct: 134 VREVTAELMQLAKTNNIAIFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGERHHTFRILRA 193
Query: 375 VKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIE 434
VKNRFGST+E+G+FEM GL V NPS++FL E+ + G ++ V M+G+R L E
Sbjct: 194 VKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGA---TGSSIVVTMEGTRPILAE 250
Query: 435 IQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAG 492
+QAL R G+ +RA +I++VL K+AGL LQ +L GV L E A
Sbjct: 251 VQALVTPTMFGNAKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAI 310
Query: 493 DLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSA 552
DLAVA AI SS+ + P F+GE+GL GE+R V+R+E+R++ AKLG+ K VPK++
Sbjct: 311 DLAVAVAIASSYKDKPTNPQECFVGELGLTGEIRRVNRIEQRINEAAKLGFTKIYVPKNS 370
Query: 553 EKSLATLGFEQMEFIGCKNLKEVINVVF 580
+ +++ IG ++EV+ VF
Sbjct: 371 LTGITPP--MEIQVIGVTTIQEVLKKVF 396
>gi|389797704|ref|ZP_10200744.1| DNA repair protein RadA [Rhodanobacter sp. 116-2]
gi|388446778|gb|EIM02798.1| DNA repair protein RadA [Rhodanobacter sp. 116-2]
Length = 461
Score = 330 bits (847), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 196/468 (41%), Positives = 271/468 (57%), Gaps = 17/468 (3%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYS-AGESDEGPVVQRTWLPQKPEEVQPVR 171
+T +VC+DCG +W G C C + T+ A S P V R
Sbjct: 5 KTAYVCTDCGAEHPKWQGSCAECGAWNTLSEIVLAPASAAKPSVGAQRSSYAGAAAGAPR 64
Query: 172 LLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAII 231
+ + + R L+G+ E+ RVLGGGLV GS+VLIGGDPG+GKSTLLLQM
Sbjct: 65 ITPLTAVALTTEART-LTGI--GELDRVLGGGLVEGSVVLIGGDPGIGKSTLLLQM---- 117
Query: 232 ADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRA 291
+ LG VYV+GEES+ Q+ RA R+ + E L + T IE I+E+ + PR
Sbjct: 118 --LGTLGAHLSSVYVTGEESLAQVAARAQRLGLPLEPLQALAETCIERILEQAAAMRPRV 175
Query: 292 LIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVL 351
L+IDSIQT++ + + G + QV+E + L R+AK+T V L GHVTK G IAGPRVL
Sbjct: 176 LVIDSIQTIWTELLTAAPGSVSQVRESAAKLTRYAKETGTSVFLVGHVTKEGGIAGPRVL 235
Query: 352 EHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHS 411
EH+VDAVLY EGE S +R+LR+ KNRFG+ +ELGVF MS GL+ V NPS IFLS
Sbjct: 236 EHMVDAVLYFEGESGSRFRVLRAFKNRFGAVNELGVFAMSDKGLREVPNPSAIFLSAHAG 295
Query: 412 DSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMKQAG 469
+ +G AV V +G+R L+E+QAL S R G++ +R M+++VL + G
Sbjct: 296 PT---SGSAVMVTREGTRPLLVEVQALVDQSSLGNPRRVTLGLEQNRLAMLLAVLHRHGG 352
Query: 470 LKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVS 529
+ + +F+NVV G+ + ETA DL V A+ SS + P+P GE+GL GE+R V
Sbjct: 353 VAAYDQDVFVNVVGGIRVQETAADLPVLLAVLSSLRDRPLPEHTIAFGEVGLSGEIRPVP 412
Query: 530 RMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVIN 577
E+R+ A G+R+ IVPK+ +G +ME +G + L E I+
Sbjct: 413 NGEERLKEAAHHGFRRAIVPKANAPKKGRVG--EMEVVGVERLSEAID 458
>gi|312898315|ref|ZP_07757705.1| DNA repair protein RadA [Megasphaera micronuciformis F0359]
gi|310620234|gb|EFQ03804.1| DNA repair protein RadA [Megasphaera micronuciformis F0359]
Length = 455
Score = 330 bits (847), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 184/471 (39%), Positives = 287/471 (60%), Gaps = 25/471 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTM-KRYSAGESDEGPVVQRTWLPQKPEEVQPVR 171
+T +VC++CG +W G C C T+ + + ++ +G +PE ++ VR
Sbjct: 5 KTRFVCNNCGSVSTRWLGRCPQCGEWNTLVEEQTVPQAPKGVASSVRSEGTEPELLKSVR 64
Query: 172 LLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAII 231
+ + M +L I +E+ VLGGG+VPG+L+L+ GDPG+GKSTL+LQ AA +
Sbjct: 65 M----ELMSRLQTGI-------DELDTVLGGGIVPGALILLSGDPGIGKSTLVLQTAAAV 113
Query: 232 ADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRA 291
+ E V+Y SGEES QI RADR+ I ++LF+ + T ++ ++++ + +
Sbjct: 114 SR-----EAGTVLYASGEESAGQIKMRADRLNIKVDDLFVQADTYLDSVLKEAKSRNVGL 168
Query: 292 LIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVL 351
LIIDSIQT+Y G+ G QV+E T+ L+ FAK T IPV++ GHVTK G IAGPR++
Sbjct: 169 LIIDSIQTMYTSDCDGAPGSQTQVREGTNKLMNFAKSTGIPVIVIGHVTKEGAIAGPRLM 228
Query: 352 EHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHS 411
EH+VD VLY+EGE+ +R+LRS+KNRFGST+E G+F M++ GL+ + NPS + L+E+ +
Sbjct: 229 EHLVDTVLYLEGERHYQFRVLRSMKNRFGSTNETGLFTMTEGGLEELVNPSALLLAERSA 288
Query: 412 DSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAG 469
AG VA +MDG R + EIQAL + R V G+ +R ++++VL K+AG
Sbjct: 289 GQ---AGSTVAAVMDGMRPLMGEIQALTSRSVFAVPRRTVVGMDYNRLILLLAVLEKRAG 345
Query: 470 LKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVS 529
+ L +++NV G+ ++ETA DL VA ++ SSF + P+ +GEIGL G++R V
Sbjct: 346 INLSTQDVYINVAGGLKMSETAADLPVALSVVSSFRDLPVHAETVVMGEIGLTGDIRRVP 405
Query: 530 RMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+R+ AKLG+++ I+P E + + ++ + + K +KE I F
Sbjct: 406 HARRRIQEAAKLGFKRFIIP---EGNRDDIDVKKYDILCVKTVKEAIEKAF 453
>gi|338213259|ref|YP_004657314.1| DNA repair protein RadA [Runella slithyformis DSM 19594]
gi|336307080|gb|AEI50182.1| DNA repair protein RadA [Runella slithyformis DSM 19594]
Length = 455
Score = 330 bits (846), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 181/470 (38%), Positives = 279/470 (59%), Gaps = 32/470 (6%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTM-KRYSAGESDEGPVVQRTW----LPQKPEEV 167
+T + C CG+ +W G C +C T+ + E +GP+ Q W L KP+ +
Sbjct: 5 KTAYFCQSCGHQSPKWLGRCPSCGEWNTLVEEVLEKEDKKGPLAQ--WKSVSLASKPKAI 62
Query: 168 QPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQM 227
++ E P E+ RVLGGG+V GSLVLIGG+PG+GKSTL+LQ+
Sbjct: 63 VEIKYEEE-----------PRIVTIDAELNRVLGGGIVLGSLVLIGGEPGIGKSTLMLQI 111
Query: 228 AAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPL 287
A + V+YVSGEES +QI RA+R+ F+ + T ++I +++
Sbjct: 112 ALTLTQ--------RVLYVSGEESEQQIKMRAERLTSKNHNCFILTETSTDNIFRQIEEF 163
Query: 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAG 347
+P LIIDSIQT+ + AG + QV++C S L+++AK++ +PV + GH+TK G +AG
Sbjct: 164 NPDVLIIDSIQTMQSSLIESGAGSVSQVRQCASELMKYAKESGVPVFMIGHITKDGSLAG 223
Query: 348 PRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLS 407
P+ LEH+VD VL EG++ ++YR+LR+ KNRFGST ELG++EM GL+ V+NPS+I +S
Sbjct: 224 PKTLEHMVDTVLQFEGDRHTTYRILRTTKNRFGSTSELGIYEMLGTGLRQVTNPSEILIS 283
Query: 408 EQHSDSEFLAGLAVAVIMDGSRSFLIEIQAL--CVSGSTVSRHVNGIQASRADMIISVLM 465
++ E L+G+ + +++G+R +IEIQ+L + T R G R M+++VL
Sbjct: 284 QRE---EQLSGITIGSMLEGNRPLMIEIQSLVSVANYGTPQRSSTGFDNKRLQMLLAVLE 340
Query: 466 KQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGEL 525
K+ G +L +FLNV G+ + + A DLAV +I SSF + +P + F GE+GLGGE+
Sbjct: 341 KRGGFRLGTQDVFLNVAGGLRVEDPAIDLAVVTSIASSFEDGFVPPSVCFAGEVGLGGEV 400
Query: 526 RMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEV 575
R VSR+E R++ KLG++K + K K + ++ ++ I L EV
Sbjct: 401 RAVSRIEGRIAEAEKLGFKKIFISKYNTKGVIFKNYD-IKIIPVAKLDEV 449
>gi|306828466|ref|ZP_07461661.1| DNA repair protein RadA [Streptococcus mitis ATCC 6249]
gi|304429265|gb|EFM32350.1| DNA repair protein RadA [Streptococcus mitis ATCC 6249]
Length = 397
Score = 330 bits (846), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 178/389 (45%), Positives = 253/389 (65%), Gaps = 13/389 (3%)
Query: 195 EVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQ 254
E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ ++ V V+YVSGEES +Q
Sbjct: 20 EFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSQV------GTVLYVSGEESAQQ 73
Query: 255 IGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQ 314
I RA+R+ E +LY+ T+++ + +V+ + P LIIDSIQT+ ++G G + Q
Sbjct: 74 IKLRAERLGDIDSEFYLYAETNMQSVRAEVERIQPDFLIIDSIQTIMSPEISGVQGSVSQ 133
Query: 315 VKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRS 374
V+E T+ L++ AK NI + + GHVTK G +AGPR+LEH+VD VLY EGE+ ++R+LR+
Sbjct: 134 VREVTAELMQLAKTNNIAIFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGERHHTFRILRA 193
Query: 375 VKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIE 434
VKNRFGST+E+G+FEM GL V NPS++FL E+ + G ++ V M+G+R L E
Sbjct: 194 VKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGA---TGSSIVVTMEGTRPILAE 250
Query: 435 IQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAG 492
+QAL R G+ +RA +I++VL K+AGL LQ +L GV L E A
Sbjct: 251 VQALVTPTMFGNAKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAI 310
Query: 493 DLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSA 552
DLAVA AI SS+ + P F+GE+GL GE+R V+R+E+R++ AKLG+ K PK++
Sbjct: 311 DLAVAVAIASSYKDKPTNPQECFVGELGLTGEIRRVNRIEQRINEAAKLGFTKVYAPKNS 370
Query: 553 EKSLATLGFEQMEFIGCKNLKEVINVVFT 581
L + ++ IG + EV+ VF+
Sbjct: 371 LNGLKVP--DNIQIIGVTTIGEVLKRVFS 397
>gi|325263686|ref|ZP_08130420.1| DNA repair protein RadA [Clostridium sp. D5]
gi|324031395|gb|EGB92676.1| DNA repair protein RadA [Clostridium sp. D5]
Length = 450
Score = 330 bits (846), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 187/473 (39%), Positives = 282/473 (59%), Gaps = 26/473 (5%)
Query: 109 GKANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQ 168
KA ++ + C +CG+ + +W G C AC+ + +E +T + + +
Sbjct: 2 AKAKKSVFFCQNCGHEESKWLGQCPACKEWNSF-------VEEKVSTAKTAVVKTSRAAE 54
Query: 169 PVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMA 228
V L EV+ D L+G+ E+ RVLGGG+VPGSLVL+GGDPG+GKSTLLLQ+
Sbjct: 55 VVSLSEVSAD----DHTRILTGI--QELDRVLGGGIVPGSLVLVGGDPGIGKSTLLLQVC 108
Query: 229 AIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLS 288
L + ++Y+SGEES+ QI RA+RM E L L T++E I ++
Sbjct: 109 ------QQLSQNKSILYISGEESLAQIKLRANRMGEFKENLKLLCETNLETIKNIIESRR 162
Query: 289 PRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGP 348
P +IIDSIQT+Y V+ + G + QV+E T+ ++ AK I + + GHVTK G +AGP
Sbjct: 163 PELVIIDSIQTMYSEEVSSAPGSVSQVRESTNIFMQLAKGLGISIFIVGHVTKEGTVAGP 222
Query: 349 RVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSE 408
RVLEH+VD VLY EG++ +SYR+LR VKNRFGST+E+GVFEM Q GL V NPS+ LS
Sbjct: 223 RVLEHMVDTVLYFEGDRHASYRILRGVKNRFGSTNEIGVFEMRQTGLVEVENPSEYMLSG 282
Query: 409 QHSDSEFLAGLAVAVIMDGSRSFLIEIQAL-CVSGSTVSRHV-NGIQASRADMIISVLMK 466
+ ++ +G VA M+G+R LIEIQAL C S + R G +R +++++VL K
Sbjct: 283 KPENA---SGSVVACSMEGTRPILIEIQALVCQSNFGLPRRTAAGTDYNRVNLLMAVLEK 339
Query: 467 QAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELR 526
+ GL L ++N+ G+ + E A DL + A+ SS+ PI + GE+GL GE+R
Sbjct: 340 RIGLPLSNYDAYVNIAGGIKMNEPAIDLGIVMALVSSYKNRPIDEKMIVFGEVGLSGEVR 399
Query: 527 MVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVV 579
V+ E+RV+ KLG+ CI+P ++ + + + ++ +G K + + +N++
Sbjct: 400 AVNMPEQRVAEAKKLGFETCILPSVSKDMVKDI--KGIKIVGVKTINDAMNIL 450
>gi|281418344|ref|ZP_06249364.1| DNA repair protein RadA [Clostridium thermocellum JW20]
gi|281409746|gb|EFB40004.1| DNA repair protein RadA [Clostridium thermocellum JW20]
Length = 454
Score = 330 bits (846), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 189/468 (40%), Positives = 275/468 (58%), Gaps = 34/468 (7%)
Query: 116 WVCSDCGYTDGQWWGMCRACESVGTMK---RYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+VC +CGY W G C +C T + +S G V V+PV +
Sbjct: 8 YVCQECGYESIGWMGKCPSCNQWNTFVEEIQEPKSKSRSGAV---------STNVKPVNI 58
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
++ ++ L+G+ E+ RVLGGG+V GSL+L+GGDPG+GKSTLLLQ+
Sbjct: 59 NDIEADTEER----YLTGI--KEMDRVLGGGIVKGSLILVGGDPGIGKSTLLLQIC---- 108
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+ + ++YVSGEES+ QI RADR+ + L + S T+ + I + P +
Sbjct: 109 --DKIKTNAKILYVSGEESINQIKLRADRLNVRNPNLLMLSETNFKVIQALSETERPDLI 166
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
+IDSIQT++ + + G + QV+E TS L+R AK NI +++ GHVTK G IAGPRVLE
Sbjct: 167 VIDSIQTMFNDELPSAPGSVSQVREITSGLMRIAKTLNIAIIIVGHVTKEGAIAGPRVLE 226
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EGE+ SYR+LR+VKNRFGST+E+G+FEM +GL V NPS + LSE+
Sbjct: 227 HMVDTVLYFEGERHLSYRILRAVKNRFGSTNEIGIFEMRDVGLVEVENPSSMLLSER--- 283
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMKQAGL 470
+E + G ++G+R LIEIQAL S R G+ +R ++++VL K+ G+
Sbjct: 284 TESVPGSVAVATLEGTRPMLIEIQALVCPTSFGMPRRMATGLDYNRITLLMAVLEKRVGM 343
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
+L ++NVV G+ + E A DL V AI SSF P+ IGE+GL GE+R VS+
Sbjct: 344 QLHNYDAYVNVVGGLKIDEPACDLGVVTAIASSFRNIPVDMDTVLIGEVGLTGEVRAVSQ 403
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINV 578
++KR+ ++G++ C+VP K + +QM+ I N+K V NV
Sbjct: 404 IDKRIREAVRIGFKNCVVPAGNMKVI-----KQMKDINNINVKFVENV 446
>gi|389806374|ref|ZP_10203505.1| DNA repair protein RadA [Rhodanobacter thiooxydans LCS2]
gi|388445594|gb|EIM01658.1| DNA repair protein RadA [Rhodanobacter thiooxydans LCS2]
Length = 461
Score = 330 bits (846), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 196/468 (41%), Positives = 270/468 (57%), Gaps = 17/468 (3%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYS-AGESDEGPVVQRTWLPQKPEEVQPVR 171
+T +VC+DCG +W G C C + T+ A S P V R
Sbjct: 5 KTAYVCTDCGAEHPKWQGACAECGAWNTLSEIVLAPASAAKPSVGAQRSSYAGAAAGAPR 64
Query: 172 LLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAII 231
+ + + R L+G+ E+ RVLGGGLV GS+VLIGGDPG+GKSTLLLQM
Sbjct: 65 ITPLTAVALTTEART-LTGI--GELDRVLGGGLVEGSVVLIGGDPGIGKSTLLLQM---- 117
Query: 232 ADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRA 291
+ LG P VYV+GEES+ Q+ RA R+ + E L + T IE ++E+ PR
Sbjct: 118 --LGTLGGQLPSVYVTGEESLAQVAARAQRLGLPLEPLQALAETCIERVLEQAAASRPRV 175
Query: 292 LIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVL 351
L+IDSIQT++ + + G + QV+E + L RFAK+T V L GHVTK G IAGPRVL
Sbjct: 176 LVIDSIQTIWTELLTAAPGSVSQVRESAAKLTRFAKETGTSVFLVGHVTKEGGIAGPRVL 235
Query: 352 EHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHS 411
EH+VDAVLY EGE S +R+LR+ KNRFG+ +ELGVF M GL+ V NPS IFLS
Sbjct: 236 EHMVDAVLYFEGESGSRFRVLRAFKNRFGAVNELGVFAMGDKGLREVPNPSAIFLSTHAG 295
Query: 412 DSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMKQAG 469
+ +G AV V +G+R L+E+QAL S R G++ +R M+++VL + G
Sbjct: 296 PT---SGSAVMVTREGTRPLLVEVQALVDQSSLGNPRRVTLGLEQNRLAMLLAVLHRHGG 352
Query: 470 LKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVS 529
+ + +F+NVV G+ + ETA DL V A+ SS + P+P GE+GL GE+R V
Sbjct: 353 VAAYDQDVFVNVVGGIRVQETAADLPVLLAVLSSLRDRPLPEHTIAFGEVGLSGEIRPVP 412
Query: 530 RMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVIN 577
E+R+ A G+R+ IVPK+ +G +ME +G + L E I+
Sbjct: 413 NGEERLKEAAHHGFRRAIVPKANAPKKGRVG--EMEVVGVERLGEAID 458
>gi|325954612|ref|YP_004238272.1| DNA repair protein RadA [Weeksella virosa DSM 16922]
gi|323437230|gb|ADX67694.1| DNA repair protein RadA [Weeksella virosa DSM 16922]
Length = 453
Score = 330 bits (846), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 178/442 (40%), Positives = 274/442 (61%), Gaps = 25/442 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPV-R 171
+T ++C +CG QW G C+ C T+ + ++ ++ W + + PV
Sbjct: 5 KTAFLCQNCGTQSSQWMGQCKNCGEWNTIVEEVIDKGED----KKVWKNPRHKTSSPVLN 60
Query: 172 LLEVNK-GMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAI 230
+ EVN G ++ + E+ RVLGGG+VPGS++L+GG+PGVGKSTL+LQ+A
Sbjct: 61 IREVNPLGETRISTK-------NAELDRVLGGGIVPGSVILVGGEPGVGKSTLMLQIALK 113
Query: 231 IADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPR 290
+ + + ++YVSGEESV Q+ RA+R+ I ++E ++ T+ + I + + P+
Sbjct: 114 LNN-------TKILYVSGEESVNQVKLRAERIGIESDECYVLPETNTQKIFAHAKEIQPQ 166
Query: 291 ALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRV 350
+IIDS+QT+ V S G + Q++E TS L+++AK+TN PV+L GH+TK G IAGP++
Sbjct: 167 LIIIDSVQTLQTAYVESSPGSISQIRETTSELIQYAKETNTPVILIGHITKEGVIAGPKI 226
Query: 351 LEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQH 410
LEH+VD VL EG++ YR+LR+ KNRFGST E+G++EM GL+ V+NPS++ + ++
Sbjct: 227 LEHMVDVVLQFEGDRNHIYRILRANKNRFGSTAEIGIYEMQGSGLREVTNPSEVLIIKK- 285
Query: 411 SDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQA 468
E L+G AVA ++G R LIE+QAL S T R G R +M+++VL K+A
Sbjct: 286 --DEPLSGNAVAATLEGVRPMLIEVQALVSSAVYGTPQRSTTGFDLKRLNMLLAVLEKRA 343
Query: 469 GLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMV 528
G +L +FLN+ G+ + + A DLA+ AAI SS + +P+ F GEIGL GE+R V
Sbjct: 344 GFRLNLKDVFLNITGGIRVDDPALDLAIVAAILSSNEDITVPDNCCFAGEIGLSGEIRAV 403
Query: 529 SRMEKRVSTVAKLGYRKCIVPK 550
+R+E+RV+ KLG+ V K
Sbjct: 404 NRVEQRVTEAEKLGFDAIFVSK 425
>gi|406672283|ref|ZP_11079509.1| DNA repair protein RadA [Bergeyella zoohelcum CCUG 30536]
gi|405587971|gb|EKB61689.1| DNA repair protein RadA [Bergeyella zoohelcum CCUG 30536]
Length = 448
Score = 330 bits (846), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 184/440 (41%), Positives = 272/440 (61%), Gaps = 29/440 (6%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLP-QKPEEVQPVR 171
+T + C +CG QW G C+ C T+ A E E +++ LP K + +
Sbjct: 5 KTAYFCQNCGTQYAQWHGQCKNCGQWNTL----AEEITE----KKSILPTSKKNKNHIIN 56
Query: 172 LLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAII 231
++EV Q + RI E+ RVLGGG+V GS+ LIGG+PG+GKSTLLLQ+A
Sbjct: 57 IIEVET---QDEPRIKTPS---EELNRVLGGGIVLGSVTLIGGEPGIGKSTLLLQLA--- 107
Query: 232 ADVHDLGEPSPVVYVSGEESVEQIGNRADRMM-IATEELFLYSSTDIEDIVEKVQPLSPR 290
L ++YVSGEES QI RADR+ + FLY+ T +E I+ + + L+P
Sbjct: 108 -----LKMKKKILYVSGEESASQIKMRADRLTDLQNPNCFLYTETSLEKIIHEAKKLAPD 162
Query: 291 ALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRV 350
+IIDSIQT+ + + S G + Q++EC++ +++FAK+T PV L GH+TK G+IAGP+V
Sbjct: 163 FVIIDSIQTIQSQLIESSPGTVSQIRECSNEIIKFAKETATPVFLVGHITKDGNIAGPKV 222
Query: 351 LEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQH 410
LEH+VD VL +G++ +RLLR+ KNRFGST E+G++EM GL+ + NPS+I +++++
Sbjct: 223 LEHMVDVVLSFDGDRNHLFRLLRAHKNRFGSTTEIGIYEMIAQGLKEIKNPSEILITKKN 282
Query: 411 SDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQA 468
D L+G AVAV ++G+R L+EIQAL + T R G A R +M+++VL K+A
Sbjct: 283 ED---LSGNAVAVTLEGNRPMLLEIQALVSTAVYGTPQRSSTGFDAKRLNMLLAVLEKRA 339
Query: 469 GLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMV 528
G +L +FLN+ G+ + A DLAV A+I SS + I F GEIGL GE+R V
Sbjct: 340 GFQLGAKDVFLNITGGIKTQDPALDLAVVASILSSNEDEAISEKYCFAGEIGLSGEIRPV 399
Query: 529 SRMEKRVSTVAKLGYRKCIV 548
+++E+R++ KLGY K +
Sbjct: 400 AQIEQRITEAEKLGYDKIFI 419
>gi|406669742|ref|ZP_11077005.1| DNA repair protein RadA [Facklamia ignava CCUG 37419]
gi|405581712|gb|EKB55721.1| DNA repair protein RadA [Facklamia ignava CCUG 37419]
Length = 465
Score = 330 bits (846), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 193/470 (41%), Positives = 275/470 (58%), Gaps = 27/470 (5%)
Query: 116 WVCSDCGYTDGQWWGMCRACESVGTMK-RYSAGESDEGPV-VQRTWLPQKPEEVQPVRLL 173
+ C CGY +W G C C + M+ + G + + P+ VQ + + +
Sbjct: 8 YECLACGYESPRWLGKCPNCGAWNQMEEQIDMGSAKKSPMHVQLD--DATSQGAMTLDRI 65
Query: 174 EVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIAD 233
E K + L E RVLGGG+V GSLVLIGGDPG+GKSTLLLQ++
Sbjct: 66 EYRKESRMLSEF--------EEFNRVLGGGIVAGSLVLIGGDPGIGKSTLLLQISI---- 113
Query: 234 VHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALI 293
L + V+YVSGEES+ QI RADR+ +++++ ++ + TD+ I +Q L+P +I
Sbjct: 114 --QLAQDKRVLYVSGEESLSQIKMRADRIALSSDQFYVLAETDLSLIAANIQQLAPDVVI 171
Query: 294 IDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEH 353
IDSIQT+ + GSAG + Q+++ TS L+ AK I + GHVTK G+IAGPR+LEH
Sbjct: 172 IDSIQTMMIPDYQGSAGSVGQIRQATSILMTIAKTNQIATFIVGHVTKEGNIAGPRMLEH 231
Query: 354 IVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDS 413
+VD VLY EGE+ + +RLLR+VKNRFG T+ELGVFEM + GL+ V NPS+IFL E+ +
Sbjct: 232 MVDTVLYFEGEQHNRFRLLRAVKNRFGPTNELGVFEMEEAGLKEVVNPSQIFLEERVIGA 291
Query: 414 EFLAGLAVAVIMDGSRSFLIEIQAL---CVSGSTVSRHVNGIQASRADMIISVLMKQAGL 470
G A+ ++G+R+ L EIQ L V G+ R GI R ++++V+ K L
Sbjct: 292 ---TGSAIVPSLEGTRTILAEIQVLLTPTVYGNA-RRTATGIDTGRISLLLAVMEKHCNL 347
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ F V GV L E A DLA+A I SSF P+ FIGEIGL GE+R V++
Sbjct: 348 LLQNQDAFFKVTGGVRLNEPAIDLAIAMGIASSFWNIPLEVSDVFIGEIGLTGEIRRVNQ 407
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+ R+ AKLG+++ +P + + L E++E I K ++E + VF
Sbjct: 408 ITSRIKEAAKLGFKRVFLPFTNTQDLKI--DEKIEIIPVKTIQEAVEKVF 455
>gi|389793019|ref|ZP_10196198.1| DNA repair protein RadA [Rhodanobacter fulvus Jip2]
gi|388435373|gb|EIL92282.1| DNA repair protein RadA [Rhodanobacter fulvus Jip2]
Length = 462
Score = 330 bits (846), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 197/471 (41%), Positives = 271/471 (57%), Gaps = 22/471 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVV----QRTWLPQKPEEVQ 168
+T +VC+DCG +W G C C T+ S V QR+
Sbjct: 5 KTAYVCTDCGAEHSKWQGQCVECGVWNTLSAIVLAPSSPASAVSAGAQRSNYAG--HAAG 62
Query: 169 PVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMA 228
R+ + + + R L+G+ E+ RVLGGGLV GS+VLIGGDPG+GKSTLLLQM
Sbjct: 63 SARITPLTEVALTTEART-LTGI--GELDRVLGGGLVQGSVVLIGGDPGIGKSTLLLQM- 118
Query: 229 AIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLS 288
+ LG P VYV+GEES+ Q+ +RA R+ + L + T IE I+E+
Sbjct: 119 -----LGTLGAHLPSVYVTGEESLSQVASRAQRLDLPLAPLQALAETCIERILEQALTTR 173
Query: 289 PRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGP 348
PR L+IDSIQT++ + + G + QV+E + L RFAK+T V L GHVTK G IAGP
Sbjct: 174 PRVLVIDSIQTIWTELLTAAPGSVSQVRESAAKLTRFAKETGTSVFLVGHVTKEGGIAGP 233
Query: 349 RVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSE 408
RVLEH+VDAVLY EGE S +R+LR+ KNRFG+ +ELGVF MS GL+ V NPS IFLS
Sbjct: 234 RVLEHMVDAVLYFEGESGSRFRVLRAFKNRFGAVNELGVFAMSDKGLREVPNPSAIFLSS 293
Query: 409 QHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMK 466
+ G AV V +G+R L+E+QAL S R G++ +R M+++VL +
Sbjct: 294 HAGPTP---GSAVMVTREGTRPLLVEVQALVDQSSLGNPRRVTLGLEQNRLAMLLAVLHR 350
Query: 467 QAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELR 526
G+ + +F+NVV G+ + ETA DL V A+ SS + P+P + GE+GL GE+R
Sbjct: 351 HGGVAAYDQDVFVNVVGGIRVQETAADLPVLLAVLSSLRDRPLPEHMITFGEVGLSGEIR 410
Query: 527 MVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVIN 577
V E+R+ A G+R+ IVPK+ +G M+ IG + L E I+
Sbjct: 411 PVPNGEERLKEAAHHGFRQAIVPKANAPKKGKVG--DMQVIGVERLSEAID 459
>gi|336171964|ref|YP_004579102.1| DNA repair protein RadA [Lacinutrix sp. 5H-3-7-4]
gi|334726536|gb|AEH00674.1| DNA repair protein RadA [Lacinutrix sp. 5H-3-7-4]
Length = 452
Score = 330 bits (846), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 182/449 (40%), Positives = 272/449 (60%), Gaps = 27/449 (6%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEE--VQPV 170
+T + C CG +W G C AC+ T+ E + P P ++ +P+
Sbjct: 5 KTTFFCQSCGTQYSKWQGQCTACKEWNTI----VEEVIQKPEKNDWKTPTNTQKRVSKPL 60
Query: 171 RLLEVNKGMK-QLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAA 229
+ E++ + +LD E RVLGGG+VPGSL L+GG+PG+GKSTLLLQ++
Sbjct: 61 TIKEIDSSKEARLD-------TLDAEFNRVLGGGIVPGSLTLLGGEPGIGKSTLLLQIS- 112
Query: 230 IIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSP 289
L P +YVSGEES +QI RA+R+ E ++ + T ++I ++++ L P
Sbjct: 113 -------LKLPYKTLYVSGEESQKQIKMRAERINPDNESCYILTETKTQNIFKQIEALEP 165
Query: 290 RALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPR 349
+IIDSIQT++ + S+G + Q+KECT+ L++FAK+TN PV+L GH+TK G+IAGP+
Sbjct: 166 DIVIIDSIQTLHSDYIESSSGSISQIKECTTELIKFAKETNTPVVLIGHITKDGNIAGPK 225
Query: 350 VLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQ 409
+LEH+VD VL EG++ +R+LR+ KNRFGST ELG++EM GL+ VSNPS+I +S++
Sbjct: 226 ILEHMVDTVLQFEGDRNHVFRILRAQKNRFGSTHELGIYEMQGSGLREVSNPSEILISKK 285
Query: 410 HSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQ 467
E L+G A+A ++G R +IE+QAL + T R G A R +M+++VL K+
Sbjct: 286 ---DEELSGNAIAATLEGMRPLMIEVQALVSTAVYGTPQRSATGFNAKRLNMLLAVLEKR 342
Query: 468 AGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRM 527
AG +L +FLN+ G+ + + A DLAV AAI SS + + F E+GL GE+R
Sbjct: 343 AGFRLGAKDVFLNITGGINVDDPAIDLAVVAAILSSNEDEALQANYCFAAEVGLSGEIRP 402
Query: 528 VSRMEKRVSTVAKLGYRKCIVPKSAEKSL 556
V R+E+R+ KLG+ V K + SL
Sbjct: 403 VQRVEQRILEAEKLGFSAIFVSKYNKISL 431
>gi|282903113|ref|ZP_06311004.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus C160]
gi|418595431|ref|ZP_13159045.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus 21342]
gi|282596068|gb|EFC01029.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus C160]
gi|374401570|gb|EHQ72636.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus 21342]
Length = 454
Score = 330 bits (846), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 181/437 (41%), Positives = 267/437 (61%), Gaps = 24/437 (5%)
Query: 118 CSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRLLEVNK 177
C CGY +W G C C + M+ ++ V+ L K +++ ++
Sbjct: 10 CMACGYQSPKWMGKCPNCGAWNQMEEIVEKAANPKHGVKTKELVGKVQKLNSIK------ 63
Query: 178 GMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDL 237
P E RVLGGG+V GSLVLIGGDPG+GKSTLLLQ+ A L
Sbjct: 64 -----HETTPRVLTDSAEFNRVLGGGIVSGSLVLIGGDPGIGKSTLLLQICA------SL 112
Query: 238 GEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIIDSI 297
+ V+Y++GEES+ Q RA+R+ + EL + + TD+E I + V+ P L++DSI
Sbjct: 113 SQKKKVLYITGEESLSQTKLRAERLDEDSSELQVLAETDLEVIYQTVKEEQPDLLVVDSI 172
Query: 298 QTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDA 357
QT+Y ++ + G + QV+E T +L+ AK+ NI + GHVTK G IAGPR+LEH+VD
Sbjct: 173 QTIYRPEISSAPGSVSQVRESTQSLMNIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDT 232
Query: 358 VLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLA 417
VLY EG++ +YR+LR+VKNRFGST+E+G+FEM Q GL+ V+NPS++FL E+ ++ +
Sbjct: 233 VLYFEGDEHHAYRILRAVKNRFGSTNEMGIFEMKQSGLKGVNNPSEMFLEERSTN---VP 289
Query: 418 GLAVAVIMDGSRSFLIEIQALCVSGSTVS---RHVNGIQASRADMIISVLMKQAGLKLQE 474
G + M+G+R LIE+QAL V+ +T + R GI +R ++++VL K+ LQ+
Sbjct: 290 GSTIVATMEGTRPLLIEVQAL-VTPTTFNNPRRMATGIDHNRLSLLMAVLEKKENYLLQQ 348
Query: 475 NAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKR 534
++ V GV LTE A DL+V A SSF + + +IGE+GL GE+R VSR+E+R
Sbjct: 349 QDAYIKVAGGVKLTEPAVDLSVIVATASSFKDKAVDGLDCYIGEVGLTGEVRRVSRIEQR 408
Query: 535 VSTVAKLGYRKCIVPKS 551
V AKLG+++ I+PK+
Sbjct: 409 VQEAAKLGFKRVIIPKN 425
>gi|49482755|ref|YP_039979.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus
MRSA252]
gi|257424639|ref|ZP_05601066.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus
55/2053]
gi|257427307|ref|ZP_05603706.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus
65-1322]
gi|257429943|ref|ZP_05606327.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus
68-397]
gi|257432645|ref|ZP_05609005.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus E1410]
gi|257435549|ref|ZP_05611597.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus M876]
gi|282904903|ref|ZP_06312761.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus
Btn1260]
gi|282907853|ref|ZP_06315688.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus
WW2703/97]
gi|282910166|ref|ZP_06317970.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus
WBG10049]
gi|282913358|ref|ZP_06321147.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus M899]
gi|282918313|ref|ZP_06326050.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus C427]
gi|282923275|ref|ZP_06330955.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus C101]
gi|283957323|ref|ZP_06374776.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus
A017934/97]
gi|293500404|ref|ZP_06666255.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus
58-424]
gi|293509349|ref|ZP_06668060.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus M809]
gi|293523936|ref|ZP_06670623.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus M1015]
gi|295427063|ref|ZP_06819699.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus
EMRSA16]
gi|297590585|ref|ZP_06949224.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus MN8]
gi|384868551|ref|YP_005748747.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus TCH60]
gi|415684081|ref|ZP_11449236.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus CGS00]
gi|417889321|ref|ZP_12533412.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus 21195]
gi|418566018|ref|ZP_13130407.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus 21264]
gi|418581201|ref|ZP_13145284.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus
CIG1605]
gi|418601646|ref|ZP_13165066.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus 21345]
gi|418891129|ref|ZP_13445246.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus
CIG1176]
gi|418899875|ref|ZP_13453934.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus
CIG1214]
gi|418908280|ref|ZP_13462288.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus
CIG149]
gi|418916335|ref|ZP_13470298.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus
CIG1267]
gi|418922158|ref|ZP_13476075.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus
CIG1233]
gi|418981393|ref|ZP_13529108.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus
CIG1242]
gi|418985026|ref|ZP_13532716.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus
CIG1500]
gi|49240884|emb|CAG39551.1| putative DNA repair protein [Staphylococcus aureus subsp. aureus
MRSA252]
gi|257272209|gb|EEV04332.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus
55/2053]
gi|257275500|gb|EEV06973.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus
65-1322]
gi|257279140|gb|EEV09741.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus
68-397]
gi|257282060|gb|EEV12195.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus E1410]
gi|257284740|gb|EEV14859.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus M876]
gi|282314143|gb|EFB44533.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus C101]
gi|282317447|gb|EFB47819.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus C427]
gi|282322390|gb|EFB52712.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus M899]
gi|282325558|gb|EFB55866.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus
WBG10049]
gi|282328237|gb|EFB58515.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus
WW2703/97]
gi|282331728|gb|EFB61239.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus
Btn1260]
gi|283790774|gb|EFC29589.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus
A017934/97]
gi|290920899|gb|EFD97960.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus M1015]
gi|291095409|gb|EFE25670.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus
58-424]
gi|291467446|gb|EFF09961.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus M809]
gi|295128851|gb|EFG58481.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus
EMRSA16]
gi|297576884|gb|EFH95599.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus MN8]
gi|312439056|gb|ADQ78127.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus TCH60]
gi|315193889|gb|EFU24283.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus CGS00]
gi|341851731|gb|EGS92642.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus 21195]
gi|371971892|gb|EHO89284.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus 21264]
gi|374398065|gb|EHQ69263.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus 21345]
gi|377704957|gb|EHT29265.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus
CIG1214]
gi|377707213|gb|EHT31506.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus
CIG1242]
gi|377708158|gb|EHT32449.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus
CIG1500]
gi|377711985|gb|EHT36208.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus
CIG1605]
gi|377732086|gb|EHT56137.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus
CIG1176]
gi|377735481|gb|EHT59511.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus
CIG1233]
gi|377751687|gb|EHT75615.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus
CIG1267]
gi|377755619|gb|EHT79517.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus
CIG149]
Length = 454
Score = 330 bits (846), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 181/437 (41%), Positives = 267/437 (61%), Gaps = 24/437 (5%)
Query: 118 CSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRLLEVNK 177
C CGY +W G C C + M+ ++ V+ L K +++ ++
Sbjct: 10 CMACGYQSPKWMGKCPNCGAWNQMEEIVEKAANPKHGVKTKELVGKVQKLNSIK------ 63
Query: 178 GMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDL 237
P E RVLGGG+V GSLVLIGGDPG+GKSTLLLQ+ A L
Sbjct: 64 -----HETTPRVLTDSAEFNRVLGGGIVSGSLVLIGGDPGIGKSTLLLQICA------SL 112
Query: 238 GEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIIDSI 297
+ V+Y++GEES+ Q RA+R+ + EL + + TD+E I + V+ P L++DSI
Sbjct: 113 SQKKKVLYITGEESLSQTKLRAERLDEDSSELQVLAETDLEVIYQTVKEEQPDLLVVDSI 172
Query: 298 QTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDA 357
QT+Y ++ + G + QV+E T +L+ AK+ NI + GHVTK G IAGPR+LEH+VD
Sbjct: 173 QTIYHPEISSAPGSVSQVRESTQSLMNIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDT 232
Query: 358 VLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLA 417
VLY EG++ +YR+LR+VKNRFGST+E+G+FEM Q GL+ V+NPS++FL E+ ++ +
Sbjct: 233 VLYFEGDEHHAYRILRAVKNRFGSTNEMGIFEMKQSGLKGVNNPSEMFLEERSTN---VP 289
Query: 418 GLAVAVIMDGSRSFLIEIQALCVSGSTVS---RHVNGIQASRADMIISVLMKQAGLKLQE 474
G + M+G+R LIE+QAL V+ +T + R GI +R ++++VL K+ LQ+
Sbjct: 290 GSTIVATMEGTRPLLIEVQAL-VTPTTFNNPRRMATGIDHNRLSLLMAVLEKKENYLLQQ 348
Query: 475 NAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKR 534
++ V GV LTE A DL+V A SSF + + +IGE+GL GE+R VSR+E+R
Sbjct: 349 QDAYIKVAGGVKLTEPAVDLSVIVATASSFKDKAVDGLDCYIGEVGLTGEVRRVSRIEQR 408
Query: 535 VSTVAKLGYRKCIVPKS 551
V AKLG+++ I+PK+
Sbjct: 409 VQEAAKLGFKRVIIPKN 425
>gi|323350603|ref|ZP_08086265.1| DNA repair protein RadA [Streptococcus sanguinis VMC66]
gi|322123285|gb|EFX94970.1| DNA repair protein RadA [Streptococcus sanguinis VMC66]
Length = 397
Score = 330 bits (846), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 180/390 (46%), Positives = 250/390 (64%), Gaps = 13/390 (3%)
Query: 194 NEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVE 253
+E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ L V+YVSGEES E
Sbjct: 19 DEFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVST------QLSHQGIVLYVSGEESAE 72
Query: 254 QIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLM 313
QI RA+R+ E +LY+ T++++I +++ + P LIIDSIQTV ++ G +
Sbjct: 73 QIKLRAERLGDIDSEFYLYAETNMQNIRTEIEKIKPDFLIIDSIQTVVSPEISSVQGSVS 132
Query: 314 QVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLR 373
QV+E T+ L++ AK NI + GH+TK G +AGPR LEH+VD VLY EGE+ ++R+LR
Sbjct: 133 QVREVTAELMQLAKTNNIATFIVGHMTKEGTLAGPRTLEHMVDTVLYFEGERQHTFRILR 192
Query: 374 SVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLI 433
+VKNRFGST+E+G+FEM GL V NPS++FL E+ + G ++ V M+G+R L
Sbjct: 193 AVKNRFGSTNEIGIFEMQSGGLVEVVNPSEVFLEERLDGA---TGSSIVVTMEGTRPILA 249
Query: 434 EIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETA 491
E+QAL R G+ +RA +I++VL K+AGL LQ +L GV L E A
Sbjct: 250 EVQALVTPTMFGNAKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPA 309
Query: 492 GDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKS 551
DLAVA AI SS+ + P FIGEIGL GE+R V+R+E+R++ AKLG+ K PK+
Sbjct: 310 IDLAVAVAIASSYKDLPTNPQECFIGEIGLTGEIRRVNRIEQRINEAAKLGFTKVYAPKN 369
Query: 552 AEKSLATLGFEQMEFIGCKNLKEVINVVFT 581
+ L + ++ IG + EV+ VF+
Sbjct: 370 SLNGLKVP--DNIQVIGVTTIGEVLKKVFS 397
>gi|421875242|ref|ZP_16306836.1| DNA repair protein RadA [Brevibacillus laterosporus GI-9]
gi|372455710|emb|CCF16385.1| DNA repair protein RadA [Brevibacillus laterosporus GI-9]
Length = 454
Score = 330 bits (846), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 202/471 (42%), Positives = 294/471 (62%), Gaps = 32/471 (6%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTM----KRYSAGESDEGPVVQRTWLPQKPEEVQ 168
+T +VC +CGY +W G C C + TM +R G + G + ++ Q
Sbjct: 5 KTKFVCQECGYESPKWLGKCPGCNNWNTMVEELERKQTGGRERGMSTK--------QKAQ 56
Query: 169 PVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMA 228
P+ + +++ +LD + E+ RVLGGGLV GSLVL+GGDPG+GKSTLLLQ +
Sbjct: 57 PITEV-ISEEEPRLDTTL-------GELNRVLGGGLVLGSLVLVGGDPGIGKSTLLLQTS 108
Query: 229 AIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLS 288
+A + + V+Y+SGEESV+QI RADR+ + T L + + TD+E + E++ +
Sbjct: 109 FALAH-----QNNKVLYISGEESVKQIKMRADRLGVQTSNLLVVTETDLEQVEEQITFVD 163
Query: 289 PRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGP 348
P +IIDSIQT++ V +AG + QV+ECTS L+R AK I + + GHVTK G IAGP
Sbjct: 164 PDVVIIDSIQTIFHPAVTSAAGSVAQVRECTSHLMRIAKSKGIAIFIVGHVTKEGAIAGP 223
Query: 349 RVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSE 408
R+LEH+VDAVLY EG++ +++R+LR+VKNRFGST+E+G+FEM + GL V NPS++FL+E
Sbjct: 224 RMLEHMVDAVLYFEGDRHNTFRILRAVKNRFGSTNEMGIFEMKEKGLAEVENPSELFLAE 283
Query: 409 QHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVLMK 466
+ +AG V M+G+R L+E+QAL S +T R G+ R MI++VL K
Sbjct: 284 RPIG---VAGSTVVASMEGTRPVLVELQALVSPTSFATPRRMATGVDHQRIAMIMAVLEK 340
Query: 467 QAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELR 526
+ GL LQ ++NV GV L E A DLA+A +I SSF + IGEIGL GE+R
Sbjct: 341 RVGLMLQNQDAYVNVAGGVRLDEPAIDLAIAVSIASSFRDHSTNPYDVVIGEIGLTGEVR 400
Query: 527 MVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVIN 577
VSR+E+R+ KLG+++ I+P+ + + L +E IG KN++E +
Sbjct: 401 GVSRIEQRIREAEKLGFKRVIIPERSMRGLDKPA--GIEVIGVKNVEEALQ 449
>gi|344340768|ref|ZP_08771692.1| DNA repair protein RadA [Thiocapsa marina 5811]
gi|343799449|gb|EGV17399.1| DNA repair protein RadA [Thiocapsa marina 5811]
Length = 453
Score = 330 bits (846), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 196/482 (40%), Positives = 272/482 (56%), Gaps = 44/482 (9%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTMK----------RYSAGESDEGPVVQRTW 159
+ R+++VC+ CG +W G C C + +M R + E P V+
Sbjct: 4 RKTRSSYVCNACGARQPKWAGQCPDCGAWNSMVETAEIARPAVRGGYAGAAESPRVESL- 62
Query: 160 LPQKPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVG 219
EV P + + G+ +LD RVLGGGLV GS+VLIGGDPG+G
Sbjct: 63 -----AEVSPEDRVRIQSGIGELD--------------RVLGGGLVTGSVVLIGGDPGIG 103
Query: 220 KSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIED 279
KSTLLLQ +A L PV+YVSGEES +QIG RA R+ +A E + L + T++E
Sbjct: 104 KSTLLLQASA------SLARHLPVLYVSGEESPQQIGLRAHRLGLAGEGIRLLAETNVES 157
Query: 280 IVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHV 339
I+ PR L++DSIQT+Y + + G + QV+E + L+RFAK+ + V L GHV
Sbjct: 158 ILAAASQERPRVLVVDSIQTLYTDALQSAPGSVSQVREAAAQLVRFAKQRDTVVFLVGHV 217
Query: 340 TKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVS 399
TK G +AGPRVLEH+VD VLY EGE ++RL+RSVKNRFG+ ELGVF M GL+ V
Sbjct: 218 TKDGTLAGPRVLEHMVDTVLYFEGEPGGAFRLVRSVKNRFGAVHELGVFAMGDRGLREVK 277
Query: 400 NPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVS--RHVNGIQASRA 457
NPS IFLS E + G V V +G+R L+E+QAL + R G+ +R
Sbjct: 278 NPSAIFLSRH---DEAVPGSLVMVTREGTRPLLVEVQALVDESPLANPRRVALGLDGNRL 334
Query: 458 DMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIG 517
M+++VL + G+ + +F+NVV GV +TETA DL + A+ SS+ + P+P +A G
Sbjct: 335 SMLLAVLHRHGGVAMFNQDVFVNVVGGVRITETAVDLPLVMAVLSSYRDRPLPLDLAVFG 394
Query: 518 EIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVIN 577
E+GL GE+R V R+ AK G R+ IVP ++ G E +E K L E ++
Sbjct: 395 EVGLSGEVRPVPNGPDRLREAAKHGVRRAIVPVG---NVPKEGVEGLEITAVKTLAEALD 451
Query: 578 VV 579
V
Sbjct: 452 GV 453
>gi|150008380|ref|YP_001303123.1| DNA repair protein RadA [Parabacteroides distasonis ATCC 8503]
gi|298375003|ref|ZP_06984960.1| DNA repair protein RadA [Bacteroides sp. 3_1_19]
gi|149936804|gb|ABR43501.1| putative DNA repair protein [Parabacteroides distasonis ATCC 8503]
gi|298267503|gb|EFI09159.1| DNA repair protein RadA [Bacteroides sp. 3_1_19]
Length = 456
Score = 330 bits (846), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 195/477 (40%), Positives = 286/477 (59%), Gaps = 35/477 (7%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKP-------E 165
+T +VCS+CG +W G C C G Y +V + ++P
Sbjct: 5 KTVYVCSNCGADSPKWLGKCPNC---GEWNTYVE------EIVTKELAVKRPVPGIMEGN 55
Query: 166 EVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLL 225
+++PV L ++ + + RI L +E+ RVLGGGLV GSLVLIGG+PG+GKSTL+L
Sbjct: 56 KIRPVLLRDITT---EEEARIDLKD---DELNRVLGGGLVKGSLVLIGGEPGIGKSTLVL 109
Query: 226 QMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQ 285
Q + + L YVSGEES Q+ RADR+ F+ T +E I +
Sbjct: 110 QTVLGLTGLKTL-------YVSGEESSRQLKLRADRLSHDNPNCFILCETHLEQIFTQAA 162
Query: 286 PLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDI 345
+ P +IIDSIQT++ V S G + QV+EC++A+L++AK++ +PVLL GH+ K G I
Sbjct: 163 NIQPDLMIIDSIQTIFTEVVESSPGSVSQVRECSAAILKYAKESGVPVLLIGHINKEGSI 222
Query: 346 AGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIF 405
AGP+VLEHIVD VL EG++ YR+LRS+KNRFGST ELG++EM Q GL+ VSNPS++
Sbjct: 223 AGPKVLEHIVDTVLQFEGDQHYMYRILRSIKNRFGSTAELGIYEMRQNGLREVSNPSELL 282
Query: 406 LSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISV 463
L++ H E L+G+A+A ++G R FLIE QAL S T R G R +M+++V
Sbjct: 283 LTQNH---EGLSGVAIAAAIEGVRPFLIETQALVSSAVYGTPQRSATGFDLRRMNMLLAV 339
Query: 464 LMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGG 523
L K+AG KL + +FLN+ G+ + + A DLAV ++I SS L+ I G+ GE+GL G
Sbjct: 340 LEKRAGFKLIQKDVFLNIAGGLKVNDPAIDLAVISSILSSSLDISIEPGVCMAGEVGLSG 399
Query: 524 ELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
E+R V+R+E+R+ KLG+ + I+P + K T +++ + K ++E +F
Sbjct: 400 EIRPVNRIEQRILEAEKLGFSRIIIPHNNLKGFDT-AKSKIQIVQVKKVEEAFRQLF 455
>gi|412988442|emb|CCO17778.1| DNA repair protein RadA [Bathycoccus prasinos]
Length = 674
Score = 330 bits (845), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 222/586 (37%), Positives = 315/586 (53%), Gaps = 101/586 (17%)
Query: 88 KPQVKKKTNLGLGDLVGTRKKGKANRTNWVCSDCGYTDGQWWGMCRACESVGTM------ 141
K V T LG G+ + ++C DCG QW+G C C++ +M
Sbjct: 81 KNHVSTSTTAALGG--GSSTSAGKTKQRYLCQDCGEDYSQWYGQCPGCKAWDSMKVFREP 138
Query: 142 ----------------------KRYSAGESDE----------------GPVVQRTWLPQK 163
+R + +D V W+
Sbjct: 139 ISNANGGSNKGKSGGGAGAAAAQRAQSNNTDRELKSSSSLIFKRNSNRKSTVGNGWVSDS 198
Query: 164 --PEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKS 221
P ++ V L +K K + R+PL G G+E+ RVLGGG+VPG LVL+GGDPGVGKS
Sbjct: 199 NAPRALKEV-LKPESKNSKNMR-RVPLPGTLGSEIERVLGGGVVPGGLVLVGGDPGVGKS 256
Query: 222 TLLLQMAAIIAD----------------------------VHDLGEPSPVVYVSGEESVE 253
T+LLQ+A ++ V L V+Y SGEESVE
Sbjct: 257 TILLQLAGLLGKEATETAKKVKKATKTSEESEAGEESMEEVEALFSGGGVLYASGEESVE 316
Query: 254 QIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLM 313
Q+ +RA+RM I + ++LYS+T +E+I++ V L P AL++DSIQTV+L GS G +
Sbjct: 317 QVASRAERMEINQDGVYLYSATRLENILDAVNRLEPSALVVDSIQTVFLEDATGSPGSVS 376
Query: 314 QVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLR 373
QV+EC +ALL AK + +PV + GHVTKSGDIAGPRVLEHIVD VLY+EG+ + R+LR
Sbjct: 377 QVRECATALLHAAKTSGMPVFIVGHVTKSGDIAGPRVLEHIVDVVLYLEGDADRAVRILR 436
Query: 374 SVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLI 433
KNR+GSTDE+GVF+M+ GL V +PS +FL E+ + A A V + GSR F++
Sbjct: 437 GHKNRYGSTDEVGVFQMADQGLVPVPSPSALFLGERIISDDVSA--APTVTLQGSRPFML 494
Query: 434 EIQALCVSGSTVS-----------------RHVNGIQASRADMIISVLMKQA-GLKLQEN 475
E+QALC S+ R G++ R ++++VL K G ++Q N
Sbjct: 495 EVQALCNDRSSTYDDEEGNNSGGGMVAPAVRTAVGLKFERMQLLLAVLAKFVLGRRVQRN 554
Query: 476 AIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRV 535
IF+NVV G+ L + + D+AVA AI SSFLE P+P+ + F GE+GLGGELR V + E+R+
Sbjct: 555 DIFVNVVGGLKLDDPSTDVAVAMAIASSFLERPLPSDMCFFGEVGLGGELRPVMQAERRI 614
Query: 536 STVAKLGYRKCIVPKSAEKSLATLGFEQ-MEFIGCKNLKEVINVVF 580
+ A +G+++ ++P + A G +Q ME I C L E + V
Sbjct: 615 AEAATMGFKRVLMPFTGANEEA--GRKQGMEIIKCNTLAEAVKVAL 658
>gi|406989072|gb|EKE08890.1| hypothetical protein ACD_16C00239G0011 [uncultured bacterium]
Length = 458
Score = 330 bits (845), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 192/472 (40%), Positives = 279/472 (59%), Gaps = 29/472 (6%)
Query: 114 TNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRLL 173
T++VC CG +W G C C+ T+ E+ ++T L K +++ L
Sbjct: 6 THYVCQSCGSCFPKWSGKCEGCQDWNTLVE----EATLDAFQKKTTL--KAQKINFSSLE 59
Query: 174 EVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIAD 233
+ + + + LSG+ NE RV GGGLVPGS++L+GGDPG+GKSTLLLQ+AA+++
Sbjct: 60 DASPPLSRF-----LSGM--NEFDRVCGGGLVPGSVLLVGGDPGIGKSTLLLQVAALMS- 111
Query: 234 VHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALI 293
+ Y+SGEE+ +Q+ RA R+ +A + L ++T I DI++ + P I
Sbjct: 112 -----AKTRCAYISGEEAADQVRLRAQRLNVAKTSVELATTTHIGDILKSLHQ-GPLVAI 165
Query: 294 IDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEH 353
IDSIQT+Y+ + + G + QV+ L+RFAKK + +++ GHVTK G IAGPRVLEH
Sbjct: 166 IDSIQTMYVEALDAAPGSVSQVRASAHELIRFAKKYGVAIVIVGHVTKEGLIAGPRVLEH 225
Query: 354 IVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDS 413
+VD VLY EGE+ +R+LRSVKNRFG TDE+GVFEM+ GLQ VSNPS +FL + D
Sbjct: 226 MVDTVLYFEGERGHHFRILRSVKNRFGPTDEIGVFEMTDKGLQEVSNPSALFLPHRTED- 284
Query: 414 EFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMKQAGLK 471
++G V ++G+R L+EIQ+L S T R V G + R MI++VL + GL
Sbjct: 285 --VSGSCVFAGLEGTRPLLVEIQSLISPSSLATPRRAVVGWDSGRLSMILAVLEARCGLI 342
Query: 472 LQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRM 531
+FLNV G+ ++E A DLAVAA++ SS P+P F GE+GL GE+R +S+
Sbjct: 343 CGTRDVFLNVAGGLRISEPAADLAVAASLLSSLANTPLPRDAVFFGEVGLSGEIRPISQQ 402
Query: 532 EKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVFTTP 583
E R+ KLG++ VPKS + F +M I ++ E + + P
Sbjct: 403 EARLKEAFKLGFKSAFVPKSPKPC----SFGEMSLIPLAHIGEFAHYLEIEP 450
>gi|342215240|ref|ZP_08707894.1| DNA repair protein RadA [Veillonella sp. oral taxon 780 str. F0422]
gi|341588737|gb|EGS32113.1| DNA repair protein RadA [Veillonella sp. oral taxon 780 str. F0422]
Length = 458
Score = 330 bits (845), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 188/475 (39%), Positives = 288/475 (60%), Gaps = 26/475 (5%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWL----PQKPEEV 167
+T + CS+CG +W+G C AC + T A E + P V+ ++ P K E+
Sbjct: 4 KKTVFFCSECGNESSKWFGRCTACGAWNT-----AVEEELQPEVKTKYVASYRPVKDEDN 58
Query: 168 QPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQM 227
+P L E+ G RI SG E+ RVLGGG+VPG+L+L+GGDPG+GKSTLLLQ+
Sbjct: 59 KPKALTEIEVGAIA---RIT-SGY--GEIDRVLGGGIVPGALILLGGDPGIGKSTLLLQV 112
Query: 228 AAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPL 287
+ IA+ E V+Y SGEES Q+ RA R+ I + L + + T+++ I+ + +
Sbjct: 113 SGRIAE-----ESGKVLYASGEESDMQLKLRAHRLGINSSNLLVQAETNLDTILNEAKRS 167
Query: 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAG 347
P L+IDSIQT+Y+ V + G + QV+ECT+ LLRFAK +IPV++ GHVTK G IAG
Sbjct: 168 QPMLLVIDSIQTMYVGSVESAPGSVSQVRECTARLLRFAKDQDIPVIIIGHVTKDGTIAG 227
Query: 348 PRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLS 407
PR+LEH+VD VLY EGE+ +R+LR +KNRFGST E G+F M + GL + NPS L+
Sbjct: 228 PRMLEHMVDVVLYFEGERSYQFRILRGIKNRFGSTSESGLFTMEEEGLGELLNPSATLLA 287
Query: 408 EQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLM 465
E+ SE G A+ ++G R L+E+Q+L VS + R G ++ ++++VL
Sbjct: 288 ER---SEEETGSAIMAYLEGVRPILVEVQSLVVSTAFGMPRRTAIGYDLNKLILLLAVLE 344
Query: 466 KQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGEL 525
K+ G L +++ ++ G+ + E A DLA+A AI S+ P+P + +GE+GL G +
Sbjct: 345 KRCGFTLGNKDVYVTIIGGLKINEPACDLAMAVAIISNLKNKPVPPDMVILGEVGLTGNI 404
Query: 526 RMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
R + R+E+R++ KLG+++ ++P K L + E + G +++EV+ +F
Sbjct: 405 RSIPRIEQRIAEAKKLGFKQFVIPAGNVKQLKGIQ-EGISIQGVTSIQEVMKSIF 458
>gi|392965171|ref|ZP_10330591.1| DNA repair protein RadA [Fibrisoma limi BUZ 3]
gi|387846554|emb|CCH52637.1| DNA repair protein RadA [Fibrisoma limi BUZ 3]
Length = 461
Score = 330 bits (845), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 183/458 (39%), Positives = 276/458 (60%), Gaps = 27/458 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTM--KRYSAGESDEG----PVVQRTWLPQKPEE 166
+T + C +CG+ +W G C +C T + E ++G P L P
Sbjct: 5 KTTYFCQNCGHQSAKWLGRCPSCGEWNTFVEELVQKDEPEKGGWRSPSSGPGGLKTAP-- 62
Query: 167 VQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQ 226
+P L +N + P E+ RVLGGG+V GSLVLIGG+PG+GKSTLLLQ
Sbjct: 63 -KPKALHAINYEEQ------PRLHTTDAELNRVLGGGIVAGSLVLIGGEPGIGKSTLLLQ 115
Query: 227 MAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQP 286
+A +A + V+Y+SGEES +QI RA+R+ T + + + T + I V+
Sbjct: 116 IALSLAGMR-------VLYISGEESEQQIKMRAERLDAPTSDCHIMTETSTQSIFRVVEH 168
Query: 287 LSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIA 346
P LIIDSIQT+ V AG + QV+ECT+ +++AK++ PV + GH+TK G +A
Sbjct: 169 FEPEVLIIDSIQTMQSSLVESGAGSVSQVRECTAEFMKYAKESGTPVFMIGHITKEGSLA 228
Query: 347 GPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFL 406
GP+VLEH+VD VL EG++ ++YR+LR+ KNRFGST ELG++EM GL+ V+NPS+I +
Sbjct: 229 GPKVLEHMVDTVLTFEGDRHTTYRILRTTKNRFGSTSELGIYEMLGSGLRQVTNPSEILI 288
Query: 407 SEQHSDSEFLAGLAVAVIMDGSRSFLIEIQAL--CVSGSTVSRHVNGIQASRADMIISVL 464
S++ E L+G+++ +++G+R +IE+Q+L + T R G A R M+++VL
Sbjct: 289 SQR---DEALSGVSIGSMLEGNRPLMIELQSLVSVATYGTPQRSSTGFDAKRLQMLLAVL 345
Query: 465 MKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGE 524
K+ G +L + +FLNV G+ + + A DLAV AAI SS+ + IP +AF GE+GLGGE
Sbjct: 346 EKRGGFRLGQQDVFLNVAGGLKVEDPAIDLAVCAAIVSSYEDIAIPPSVAFAGEVGLGGE 405
Query: 525 LRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFE 562
+R VSR++ R++ KLG+++ V + K L F+
Sbjct: 406 VRAVSRIDSRIAEAEKLGFKQIYVSRYNLKGLEAGNFK 443
>gi|374595872|ref|ZP_09668876.1| DNA repair protein RadA [Gillisia limnaea DSM 15749]
gi|373870511|gb|EHQ02509.1| DNA repair protein RadA [Gillisia limnaea DSM 15749]
Length = 454
Score = 330 bits (845), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 183/446 (41%), Positives = 272/446 (60%), Gaps = 28/446 (6%)
Query: 114 TNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQ----P 169
T + C +CG +W G C +C+ T+ + D Q+ W EV+ P
Sbjct: 6 TIFYCQNCGGQHPKWQGQCSSCKEWNTLVEEVIQKPD-----QKDWKTALVREVKRTPKP 60
Query: 170 VRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAA 229
++ ++ + R+ + L E+ RVLGGGLVPGSL L+GG+PG+GKSTLLLQ++
Sbjct: 61 TKIADIQVST---EARLNTNNL---ELDRVLGGGLVPGSLTLLGGEPGIGKSTLLLQIS- 113
Query: 230 IIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSP 289
L +YVSGEES +QI RA+R+ ++ + T ++I ++++ L P
Sbjct: 114 -------LNLKQKTLYVSGEESEQQIKMRAERINPNPANCYILTETKTQNIFKQIETLQP 166
Query: 290 RALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPR 349
+IIDSIQT++ + SAG + Q++ECT+ L+++AK+T +PV+L GH+TK G IAGP+
Sbjct: 167 EIVIIDSIQTLHSDYIESSAGSISQIRECTTELIKYAKETGVPVILIGHITKEGSIAGPK 226
Query: 350 VLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQ 409
VLEH+VD VL EG++ YR+LR+ KNRFGST ELG++EM GL+ V+NPS+I +S+
Sbjct: 227 VLEHMVDTVLQFEGDRNHVYRILRAHKNRFGSTHELGIYEMLGSGLREVTNPSEILISK- 285
Query: 410 HSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQ 467
+ E L+G A+A M+G R +IEIQAL S T R G + R +M+++VL K+
Sbjct: 286 --NDEGLSGTAIASTMEGMRPLMIEIQALVSSAVYGTPQRSTTGYNSKRLNMLLAVLEKR 343
Query: 468 AGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRM 527
AG +L +FLNV G+++ + A DLAV AAI SS + I I F E+GL GELR
Sbjct: 344 AGFRLGAKDVFLNVTGGISVDDPAIDLAVIAAILSSNEDVFIEKDICFAAEVGLAGELRP 403
Query: 528 VSRMEKRVSTVAKLGYRKCIVPKSAE 553
V R+E+R+ KLG+ ++ K +
Sbjct: 404 VPRVEQRILEAEKLGFATIMISKQTK 429
>gi|163787208|ref|ZP_02181655.1| DNA repair protein [Flavobacteriales bacterium ALC-1]
gi|159877096|gb|EDP71153.1| DNA repair protein [Flavobacteriales bacterium ALC-1]
Length = 459
Score = 330 bits (845), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 179/440 (40%), Positives = 269/440 (61%), Gaps = 21/440 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T + C +CG +W G C +C+ T+ A E + P + W + R
Sbjct: 12 KTTFFCQNCGSQYAKWQGQCTSCKEWNTI----AEEVIQKPE-KSDWKTPSSTTKRTSRP 66
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
L++N+ + R+ + E RVLGGG+V GSL L+GG+PG+GKSTLLLQ+A
Sbjct: 67 LKINEIDTSQEARLNMQDA---EFNRVLGGGMVHGSLTLLGGEPGIGKSTLLLQIA---- 119
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
L +YVSGEES +QI RA+R+ + ++ + T ++I ++++ L P +
Sbjct: 120 ----LKLQYKTLYVSGEESQKQIKMRAERINSKSSNCYILTETKTQNIFKQIEKLQPDIV 175
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
+IDSIQT++ + SAG + Q+KECT+ L++FAK+T PVLL GH+TK G IAGP++LE
Sbjct: 176 VIDSIQTLHSDYIESSAGSISQIKECTTELIKFAKETATPVLLIGHITKDGHIAGPKILE 235
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VL EG++ +R+LR+ KNRFGST+ELG++EM GL+ VSNPS+I +SE+ +
Sbjct: 236 HMVDTVLQFEGDRNHVFRILRANKNRFGSTNELGIYEMQGSGLREVSNPSEILISEKDGE 295
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
L+G AVA ++G R +IE+QAL + T R G A R +M+++VL K+AG
Sbjct: 296 ---LSGNAVAATLEGLRPLMIEVQALVSTAVYGTPQRSATGFNAKRLNMLLAVLEKRAGF 352
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
+L +FLN+ G+ + + A DLAV A+I SS + +P+ F E+GL GE+R V R
Sbjct: 353 RLGAKDVFLNITGGITVDDPAIDLAVVASILSSNEDVALPSDYCFAAEVGLSGEIRPVQR 412
Query: 531 MEKRVSTVAKLGYRKCIVPK 550
+E+R+ KLG+ V K
Sbjct: 413 VEQRILEAEKLGFSTIFVSK 432
>gi|418896911|ref|ZP_13450984.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus
CIGC341D]
gi|377761690|gb|EHT85559.1| DNA repair protein RadA [Staphylococcus aureus subsp. aureus
CIGC341D]
Length = 449
Score = 330 bits (845), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 181/437 (41%), Positives = 267/437 (61%), Gaps = 24/437 (5%)
Query: 118 CSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRLLEVNK 177
C CGY +W G C C + M+ ++ V+ L K +++ ++
Sbjct: 5 CMACGYQSPKWMGKCPNCGAWNQMEEIVEKAANPKHGVKTKELVGKVQKLNSIK------ 58
Query: 178 GMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDL 237
P E RVLGGG+V GSLVLIGGDPG+GKSTLLLQ+ A L
Sbjct: 59 -----HETTPRVLTDSAEFNRVLGGGIVSGSLVLIGGDPGIGKSTLLLQICA------SL 107
Query: 238 GEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIIDSI 297
+ V+Y++GEES+ Q RA+R+ + EL + + TD+E I + V+ P L++DSI
Sbjct: 108 SQKKKVLYITGEESLSQTKLRAERLDEDSSELQVLAETDLEVIYQTVKEEQPDLLVVDSI 167
Query: 298 QTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDA 357
QT+Y ++ + G + QV+E T +L+ AK+ NI + GHVTK G IAGPR+LEH+VD
Sbjct: 168 QTIYHPEISSAPGSVSQVRESTQSLMNIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDT 227
Query: 358 VLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLA 417
VLY EG++ +YR+LR+VKNRFGST+E+G+FEM Q GL+ V+NPS++FL E+ ++ +
Sbjct: 228 VLYFEGDEHHAYRILRAVKNRFGSTNEMGIFEMKQSGLKGVNNPSEMFLEERSTN---VP 284
Query: 418 GLAVAVIMDGSRSFLIEIQALCVSGSTVS---RHVNGIQASRADMIISVLMKQAGLKLQE 474
G + M+G+R LIE+QAL V+ +T + R GI +R ++++VL K+ LQ+
Sbjct: 285 GSTIVATMEGTRPLLIEVQAL-VTPTTFNNPRRMATGIDHNRLSLLMAVLEKKENYLLQQ 343
Query: 475 NAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKR 534
++ V GV LTE A DL+V A SSF + + +IGE+GL GE+R VSR+E+R
Sbjct: 344 QDAYIKVAGGVKLTEPAVDLSVIVATASSFKDKAVDGLDCYIGEVGLTGEVRRVSRIEQR 403
Query: 535 VSTVAKLGYRKCIVPKS 551
V AKLG+++ I+PK+
Sbjct: 404 VQEAAKLGFKRVIIPKN 420
>gi|256844494|ref|ZP_05549980.1| DNA repair protein RadA [Lactobacillus crispatus 125-2-CHN]
gi|256613572|gb|EEU18775.1| DNA repair protein RadA [Lactobacillus crispatus 125-2-CHN]
Length = 458
Score = 330 bits (845), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 186/470 (39%), Positives = 274/470 (58%), Gaps = 19/470 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T + C CGY + G C C + ++ + + L QK +PV+L
Sbjct: 5 KTQYKCRSCGYISASYLGRCPNCGAWNQFEKETEEVQKRSTKATASRLIQKTGLNEPVKL 64
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
+K + + RI E+ RVLGGG+V GSLVLIGGDPG+GKSTL+LQ+ +
Sbjct: 65 ---DKIKAEKEERIVTKS---EELNRVLGGGIVLGSLVLIGGDPGIGKSTLMLQIMS--- 115
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
DL E V+YVSGEES QI RADR+ + + LY TD+ DI E++ + P +
Sbjct: 116 ---DLSEKYKVLYVSGEESANQIKLRADRLGVGQSNMLLYPETDMHDIREQINDVKPDFV 172
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
+IDSIQT+ + G QV+E TS L++ AK I V + GHVTK G IAGP++LE
Sbjct: 173 VIDSIQTMNEPSLDSMTGSASQVREVTSELMKIAKMDAITVFVIGHVTKEGAIAGPKILE 232
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EG++ SYR+L SVKNRFG+ +E+G+FEM GL+ V+NPS IFL ++ +
Sbjct: 233 HMVDTVLYFEGDEHHSYRILHSVKNRFGAANEIGMFEMVNEGLREVTNPSSIFLDQRLPN 292
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMKQAGL 470
S G AV V ++G+R L EIQAL + R +GI ++A ++++VL K+ L
Sbjct: 293 S---TGSAVVVSLEGTRPLLAEIQALVTPTAFGYAKRTTSGISFNKASLLLAVLEKRGNL 349
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ ++L G+ L E A DLA+A A+ SS+ + I F+GE+GL GE+R V +
Sbjct: 350 MLQNQDVYLTATGGIKLNEPAIDLAIAMAVASSYTDKEISPTDCFVGEVGLTGEVRRVDK 409
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
++ RV AK+G+++ +P+ + L +E I ++ + + +VF
Sbjct: 410 IDARVKEAAKVGFKRIFIPR--HNMYSGLKDHGIEVIPVSSIPQALKLVF 457
>gi|319943625|ref|ZP_08017906.1| DNA repair protein RadA [Lautropia mirabilis ATCC 51599]
gi|319742858|gb|EFV95264.1| DNA repair protein RadA [Lautropia mirabilis ATCC 51599]
Length = 469
Score = 330 bits (845), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 185/459 (40%), Positives = 279/459 (60%), Gaps = 21/459 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T +VC +CG T +W G C AC++ T++ + + D T + + + +
Sbjct: 19 KTQFVCRECGNTTAKWLGQCPACQAWNTLEEFRLPKKDASGRRPTTGMLAETSSIALLSE 78
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
+ V+ R+P +GL E RVLGGG+VPGS+VLIGGDPG+GKSTLLLQ A+++
Sbjct: 79 VPVDT-----VPRLP-TGL--AEFDRVLGGGMVPGSVVLIGGDPGIGKSTLLLQALALMS 130
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+ V+YVSGEES+ Q+ R R+ I L + + + I + ++ + P +
Sbjct: 131 ------QNQRVLYVSGEESLAQVALRGARLGIDGSTLPMLAEVSLAHITQAIEQVKPAVV 184
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
+IDSIQT+ + + G + QV++C + L R AK+ + V++ GHVTK G +AGPR+LE
Sbjct: 185 VIDSIQTMMSDDLQSAPGSVSQVRDCAAQLTRLAKQQGVAVVMIGHVTKEGALAGPRILE 244
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EG+ S+YRL+R++KNRFG+ +ELGVF M+ GL+AV+NPS +FLS QH+D
Sbjct: 245 HMVDTVLYFEGDSHSTYRLIRAIKNRFGAVNELGVFGMTDRGLKAVTNPSALFLS-QHAD 303
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVLMKQAGL 470
++G V + +G+R L+EIQAL +G R G+ R ++++VL + AG+
Sbjct: 304 P--VSGSCVLITQEGTRPLLVEIQALVDQSAGGAPRRLCVGLDPMRLSLLLAVLNRHAGI 361
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
+ + +FLN V GV +TE A DLAV A+ SS P+P G+A GE+GL GE+R R
Sbjct: 362 QYHDQDVFLNAVGGVRITEPAADLAVVLAVLSSLKNRPLPQGLAVFGELGLAGEMRPSPR 421
Query: 531 MEKRVSTVAKLGYRKCIVPK--SAEKSLATLGFEQMEFI 567
++R+ KLG+ + I PK + K LA L +E I
Sbjct: 422 GQERLREALKLGFSRVICPKANAPRKPLAGLEVIAVERI 460
>gi|418619605|ref|ZP_13182428.1| DNA repair protein RadA [Staphylococcus hominis VCU122]
gi|374824171|gb|EHR88142.1| DNA repair protein RadA [Staphylococcus hominis VCU122]
Length = 447
Score = 330 bits (845), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 181/437 (41%), Positives = 271/437 (62%), Gaps = 30/437 (6%)
Query: 121 CGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQ---KPEEVQPVRLLEVNK 177
CGY +W G C C + M+ ++++T P+ K +E Q ++ ++N
Sbjct: 3 CGYQSPKWMGKCPNCGAWNQMEE----------IIEKTSNPKHGVKTKETQ-AKVQKLNS 51
Query: 178 GMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDL 237
+ R+ E RVLGGG+V GSLVLIGGDPG+GKSTLLLQ+ A L
Sbjct: 52 IKHETTPRVQTDS---KEFNRVLGGGIVSGSLVLIGGDPGIGKSTLLLQICA------SL 102
Query: 238 GEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIIDSI 297
+ V+Y++GEES+ Q RADR+ + L + + TD+E I + V+ P L++DSI
Sbjct: 103 SQKLNVLYITGEESLNQTKLRADRLEEDSSNLNVLAETDLEVIHQTVEQERPDILVVDSI 162
Query: 298 QTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDA 357
QT+Y ++ + G + QV+E T +L+ AK+ NI + GHVTK G IAGPR+LEH+VD
Sbjct: 163 QTIYHPEISSAPGSVSQVRESTQSLMNIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDT 222
Query: 358 VLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLA 417
VLY EG++ +YR+LR+VKNRFGST+E+G+FEM Q GL+ V NPS++FL E+ ++ +
Sbjct: 223 VLYFEGDEHHAYRILRAVKNRFGSTNEMGIFEMKQSGLKGVQNPSEMFLEERSTN---VP 279
Query: 418 GLAVAVIMDGSRSFLIEIQALCVSGSTVS---RHVNGIQASRADMIISVLMKQAGLKLQE 474
G + M+G+R LIE+Q+L V+ +T + R GI +R ++++VL K+ LQ+
Sbjct: 280 GSTIVATMEGTRPLLIEVQSL-VTPTTFNNPRRMATGIDHNRLSLLMAVLEKKENYLLQQ 338
Query: 475 NAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKR 534
++ V GV LTE A DL++ A SSF + + +IGE+GL GE+R VSR+E+R
Sbjct: 339 QDAYIKVAGGVRLTEPAVDLSIIVATASSFKDKAVDGLDCYIGEVGLTGEVRRVSRIEQR 398
Query: 535 VSTVAKLGYRKCIVPKS 551
V AKLG+++ I+PK+
Sbjct: 399 VQEAAKLGFKRVIIPKT 415
>gi|256752491|ref|ZP_05493348.1| DNA repair protein RadA [Thermoanaerobacter ethanolicus CCSD1]
gi|256748626|gb|EEU61673.1| DNA repair protein RadA [Thermoanaerobacter ethanolicus CCSD1]
Length = 463
Score = 330 bits (845), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 180/466 (38%), Positives = 279/466 (59%), Gaps = 27/466 (5%)
Query: 114 TNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRLL 173
T +VC +CG+ +W G C C+S + E ++ + +K ++ + LL
Sbjct: 12 TKFVCRECGFESSKWMGRCPNCDSWNSF---------EEEAIESSKNFRKTKDRSQIYLL 62
Query: 174 EVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIAD 233
E ++ R + E RVLGGG+V GSLVLIGGDPG+GKSTLLLQ+A I+D
Sbjct: 63 EDVTFSEEERIRTGIE-----EFDRVLGGGIVKGSLVLIGGDPGIGKSTLLLQVAGNISD 117
Query: 234 VHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALI 293
V+YVSGEESV+QI RADR++ + ++L T+IE+I K+ P +I
Sbjct: 118 ------SRKVLYVSGEESVQQIKLRADRILKEKQRIYLLCETNIEEIERKIDENKPDFVI 171
Query: 294 IDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEH 353
IDSIQT+Y G + Q+++ T L+ AK+ +I + L GHVTK G IAGP+VLEH
Sbjct: 172 IDSIQTIYTEESETIPGSVSQIRQVTQKLMEIAKQKDISIFLIGHVTKEGAIAGPKVLEH 231
Query: 354 IVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDS 413
+VD VLY EG++ S+R+LR+VKNRFG+T E+GVF+M + GL +SNPS+ LS + D
Sbjct: 232 MVDTVLYFEGDRTQSFRILRAVKNRFGATHEIGVFDMEEDGLCEISNPSEFILSNKPKD- 290
Query: 414 EFLAGLAVAVIMDGSRSFLIEIQAL-CVSGSTVSRHV-NGIQASRADMIISVLMKQAGLK 471
++G AV + G+R L+E+Q+L C + V R + G +R ++++V+ K+ G+
Sbjct: 291 --VSGTAVVCSIQGTRPILMEVQSLICKTTFGVPRRMATGFDYNRFILLLAVIEKRLGIN 348
Query: 472 LQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRM 531
L + ++NV G+ + E A DL + A+ S + PIP + FIGE+GL GE+R VS +
Sbjct: 349 LSQFDAYVNVAGGMKIQEPAADLGIIASSLSGYFNIPIPEDVCFIGEVGLTGEVRGVSNI 408
Query: 532 EKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVIN 577
+KR+ K+G+ + +P+ K + G ++ K++K++++
Sbjct: 409 DKRIGEAQKMGFSQVFIPEMKTKEIKKFG--NIKVTKIKDIKDIMD 452
>gi|289207608|ref|YP_003459674.1| DNA repair protein RadA [Thioalkalivibrio sp. K90mix]
gi|288943239|gb|ADC70938.1| DNA repair protein RadA [Thioalkalivibrio sp. K90mix]
Length = 448
Score = 330 bits (845), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 195/470 (41%), Positives = 277/470 (58%), Gaps = 29/470 (6%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPV-R 171
+T +VC +CG +W G C C + T++ + P Q EV + R
Sbjct: 5 KTQYVCRECGAVSPKWAGQCGDCGAWNTLE-------EAVPATQAGPRGGYAGEVAGITR 57
Query: 172 LLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAII 231
L EV G +P +G +E+ R LGGGLV GS+VL+GGDPG+GKSTLLLQ A++
Sbjct: 58 LGEVEAG------EVPRTGTGLSELDRALGGGLVHGSVVLLGGDPGIGKSTLLLQTLAML 111
Query: 232 ADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRA 291
V D +YV+GEES +QI RA R+ + + L L + T +E+++ + PR
Sbjct: 112 -PVGD------TLYVTGEESAQQISMRARRLGLEVDGLRLLTETQVENVIATCERERPRV 164
Query: 292 LIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVL 351
L+IDSIQT+Y + + G + QV+E +AL+R AK+ I V+L GHVTK G +AGPRVL
Sbjct: 165 LVIDSIQTLYTAALQSAPGSVGQVRESAAALVRLAKQRGITVILVGHVTKDGQLAGPRVL 224
Query: 352 EHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHS 411
EH+VD VLY EG+ YR+LR+VKNRFG+ +ELGVF M + GL+AVSNPS IFLS
Sbjct: 225 EHMVDTVLYFEGDPDGRYRMLRAVKNRFGAVNELGVFAMLENGLKAVSNPSAIFLSRHQG 284
Query: 412 DSEFLAGLAVAVIMDGSRSFLIEIQALCV-SGSTVSRHVN-GIQASRADMIISVLMKQAG 469
+ G V V +G+R L+E+QAL S + R + G++ +R M+++VL + G
Sbjct: 285 P---VPGSVVMVTREGTRPLLVEVQALVSESHAPQPRRITVGLEQNRLTMLLAVLHRHGG 341
Query: 470 LKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVS 529
+ L + +F+NVV GV +TETA DL + AA SSF + P+P + GE+GL GE+R V
Sbjct: 342 VALFDQDVFINVVGGVRVTETAADLPMLAAALSSFRDRPLPQEMLAFGEVGLAGEIRPVP 401
Query: 530 RMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVV 579
E+R+ AK GY + I P + G ME + L EV++ +
Sbjct: 402 NGEERLREAAKHGYTRAIAPAANAPRKPIKG---MEVVAVSRLSEVLDAL 448
>gi|256823335|ref|YP_003147298.1| DNA repair protein RadA [Kangiella koreensis DSM 16069]
gi|256796874|gb|ACV27530.1| DNA repair protein RadA [Kangiella koreensis DSM 16069]
Length = 454
Score = 330 bits (845), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 194/470 (41%), Positives = 290/470 (61%), Gaps = 23/470 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTM-KRYSAGESDEGPVVQRTWLPQKPEEVQPVR 171
+T +VC +CG QW G C AC++ ++ ++ A ++ + T + +V VR
Sbjct: 5 KTIYVCQECGTETPQWAGQCGACKAWNSLVEQVDAKKATSSKTSRFTGYSGQATKV--VR 62
Query: 172 LLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAII 231
+ +V+ + +L R+ SGL +E+ RVLGGGLVPGS+VL+GGDPG+GKST+LLQ I
Sbjct: 63 MDKVD--LSELP-RMS-SGL--SELDRVLGGGLVPGSVVLMGGDPGIGKSTILLQSLCKI 116
Query: 232 ADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRA 291
+ E V+YV+GEES++Q+ RA R+ +AT + L + T +E I + P+
Sbjct: 117 S------ETDSVLYVTGEESLQQVTMRAQRLGLATGDFSLLTETQVEQITTQALMQKPKV 170
Query: 292 LIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVL 351
+++DSIQT+Y + + GG+ QV+E + L+RFAK+T I +L+ GHVTK G +AGPRVL
Sbjct: 171 MVVDSIQTIYTEMLQSAPGGVAQVRESAAQLVRFAKQTGITLLVVGHVTKDGALAGPRVL 230
Query: 352 EHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHS 411
EH+VDAVLY EGE+ RLLR+VKNRFG+ +ELGVF M+ GL+ V NPS IFLS+
Sbjct: 231 EHMVDAVLYFEGERDGRLRLLRAVKNRFGAVNELGVFAMTDEGLKQVKNPSAIFLSKYQ- 289
Query: 412 DSEFLAGLAVAVIMDGSRSFLIEIQALC-VSGSTVSRHVN-GIQASRADMIISVLMKQAG 469
+ ++G AV +G+R L+EIQAL S + R + G+ R M+++VL + AG
Sbjct: 290 --DPVSGSAVMATWEGTRPMLVEIQALVDTSYAPQPRRIAVGLDHQRIAMLLAVLNRHAG 347
Query: 470 LKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVS 529
+ + +F NVV GV + ET+ DLA+ A+I SS P+ GEIGL GE+R V
Sbjct: 348 IATHDQDVFANVVGGVRVMETSSDLALVASIISSLRNRPLEAHTVIFGEIGLAGEIRPVP 407
Query: 530 RMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVV 579
++R+ AK G+++ IVP+ + A E +E IG + + I ++
Sbjct: 408 NGQERLKEAAKHGFKRAIVPEGNKPPKA---MEGLEVIGVSRMDQFIQLI 454
>gi|256003492|ref|ZP_05428482.1| DNA repair protein RadA [Clostridium thermocellum DSM 2360]
gi|385779759|ref|YP_005688924.1| DNA repair protein RadA [Clostridium thermocellum DSM 1313]
gi|419722361|ref|ZP_14249505.1| DNA repair protein RadA [Clostridium thermocellum AD2]
gi|419725935|ref|ZP_14252969.1| DNA repair protein RadA [Clostridium thermocellum YS]
gi|255992516|gb|EEU02608.1| DNA repair protein RadA [Clostridium thermocellum DSM 2360]
gi|316941439|gb|ADU75473.1| DNA repair protein RadA [Clostridium thermocellum DSM 1313]
gi|380770711|gb|EIC04597.1| DNA repair protein RadA [Clostridium thermocellum YS]
gi|380781546|gb|EIC11200.1| DNA repair protein RadA [Clostridium thermocellum AD2]
Length = 454
Score = 330 bits (845), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 189/468 (40%), Positives = 276/468 (58%), Gaps = 34/468 (7%)
Query: 116 WVCSDCGYTDGQWWGMCRACESVGTMK---RYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+VC +CGY W G C +C T + +S G V V+PV +
Sbjct: 8 YVCQECGYESIGWMGKCPSCNQWNTFVEEIQEPKSKSRSGAV---------SINVKPVNI 58
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
++ ++ L+G+ E+ RVLGGG+V GSL+L+GGDPG+GKSTLLLQ+
Sbjct: 59 NDIEADTEER----YLTGI--KEMDRVLGGGIVKGSLILVGGDPGIGKSTLLLQIC---- 108
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+ + ++YVSGEES++QI RADR+ + L + S T+ + I + P +
Sbjct: 109 --DKIKTNAKILYVSGEESIKQIKLRADRLNVRNPNLLMLSETNFKVIQALSETERPDLI 166
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
+IDSIQT++ + + G + QV+E TS L+R AK NI +++ GHVTK G IAGPRVLE
Sbjct: 167 VIDSIQTMFNDELPSAPGSVSQVREITSGLMRIAKTLNIAIIIVGHVTKEGAIAGPRVLE 226
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EGE+ SYR+LR+VKNRFGST+E+G+FEM +GL V NPS + LSE+
Sbjct: 227 HMVDTVLYFEGERHLSYRILRAVKNRFGSTNEIGIFEMRDVGLVEVENPSSMLLSER--- 283
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMKQAGL 470
+E + G ++G+R LIEIQAL S R G+ +R ++++VL K+ G+
Sbjct: 284 TESVPGSVAVATLEGTRPMLIEIQALVCPTSFGMPRRMATGLDYNRITLLMAVLEKRVGM 343
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
+L ++NVV G+ + E A DL V AI SSF P+ IGE+GL GE+R VS+
Sbjct: 344 QLHNYDAYVNVVGGLKIDEPACDLGVVTAIASSFRNIPVDMDTVLIGEVGLTGEVRAVSQ 403
Query: 531 MEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINV 578
++KR+ ++G++ C+VP K + +QM+ I N+K V NV
Sbjct: 404 IDKRIREAVRIGFKNCVVPAGNMKVI-----KQMKDINNINVKFVENV 446
>gi|269215101|ref|ZP_06159039.1| DNA repair protein RadA [Neisseria lactamica ATCC 23970]
gi|269208321|gb|EEZ74776.1| DNA repair protein RadA [Neisseria lactamica ATCC 23970]
Length = 464
Score = 330 bits (845), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 191/476 (40%), Positives = 277/476 (58%), Gaps = 32/476 (6%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKP--EEV 167
K +T + C+ CG T +W G C C T++ A + Q +W + +
Sbjct: 8 KTLKTLYQCTGCGGTSPKWQGKCPHCGEWNTLQESLAAPDPKNARFQ-SWAADTSTVQSL 66
Query: 168 QPVRLLEVNK---GMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLL 224
V EV + GM +LD RVLGGGLV G+++L+GGDPG+GKSTLL
Sbjct: 67 STVTATEVPRNPTGMGELD--------------RVLGGGLVDGAVILLGGDPGIGKSTLL 112
Query: 225 LQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKV 284
LQ A +A + V+YVSGEES +Q+ RA R+ + T+ + L + +E I +
Sbjct: 113 LQTIAKMA------QSRKVLYVSGEESAQQVALRAQRLELPTDGVNLLAEIRMEAIQTAL 166
Query: 285 QPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGD 344
+ P ++IDSIQT+Y + + G + QV+EC + L R AK+ ++L GHVTK G
Sbjct: 167 KQHQPEVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRMAKQMGTAMILVGHVTKDGA 226
Query: 345 IAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKI 404
IAGPRVLEH+VD VLY EG++ S+YR++R++KNRFG+ +ELGVF M++ GL+ VSNPS I
Sbjct: 227 IAGPRVLEHMVDTVLYFEGDQHSNYRMIRAIKNRFGAANELGVFAMTENGLKGVSNPSAI 286
Query: 405 FLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIIS 462
FL+ D+ G V V +GSR L+EIQAL G T R G++ +R M+++
Sbjct: 287 FLASYRDDT---PGSCVLVTQEGSRPLLVEIQALVDDAHGFTPKRLTVGLEQNRLAMLLA 343
Query: 463 VLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLG 522
VL + G+ + +FLN V GV + E A DLAV A+ SSF P+P GEIGL
Sbjct: 344 VLNRHGGIACFDQDVFLNAVGGVKIGEPAADLAVILAMLSSFRNRPMPEKTVVFGEIGLS 403
Query: 523 GELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINV 578
GE+R V+R ++R+ KLG+++ IVPK+ A F ++ G +L+E I++
Sbjct: 404 GEVRPVARGQERLKEAEKLGFKRAIVPKANMPRNAK-EFPNLKIYGVSSLQEAIDI 458
>gi|422885127|ref|ZP_16931575.1| DNA repair protein RadA [Streptococcus sanguinis SK49]
gi|332358098|gb|EGJ35930.1| DNA repair protein RadA [Streptococcus sanguinis SK49]
Length = 397
Score = 330 bits (845), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 179/390 (45%), Positives = 250/390 (64%), Gaps = 13/390 (3%)
Query: 194 NEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVE 253
+E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ L V+YVSGEES E
Sbjct: 19 DEFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVST------QLSHQGTVLYVSGEESAE 72
Query: 254 QIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLM 313
QI RA+R+ E +LY+ T++++I +++ + P LIIDSIQTV ++ G +
Sbjct: 73 QIKLRAERLGDIDSEFYLYAETNMQNIRTEIEKIKPDFLIIDSIQTVMSPEISSVQGSVS 132
Query: 314 QVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLR 373
QV+E T+ L++ AK NI + GH+TK G +AGPR LEH+VD VLY EGE+ ++R+LR
Sbjct: 133 QVREVTAELMQLAKTNNIATFIVGHMTKEGTLAGPRTLEHMVDTVLYFEGERQHTFRILR 192
Query: 374 SVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLI 433
+VKNRFGST+E+G+FEM GL V NPS++FL E+ + G ++ V M+G+R L
Sbjct: 193 AVKNRFGSTNEIGIFEMQSGGLVEVVNPSEVFLEERLDGA---TGSSIVVTMEGTRPILA 249
Query: 434 EIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETA 491
E+QAL R G+ +RA +I++VL K+AGL LQ +L GV L E A
Sbjct: 250 EVQALVTPTMFGNAKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPA 309
Query: 492 GDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKS 551
DLAVA AI SS+ + P FIGEIGL GE+R V+R+E+R++ AKLG+ K PK+
Sbjct: 310 IDLAVAVAITSSYKDLPTNPQECFIGEIGLTGEIRRVNRIEQRINEAAKLGFTKVYAPKN 369
Query: 552 AEKSLATLGFEQMEFIGCKNLKEVINVVFT 581
+ L + ++ IG + +V+ VF+
Sbjct: 370 SLNGLKVP--DNIQVIGVTTIGQVLKKVFS 397
>gi|423315603|ref|ZP_17293508.1| DNA repair protein RadA [Bergeyella zoohelcum ATCC 43767]
gi|405585921|gb|EKB59714.1| DNA repair protein RadA [Bergeyella zoohelcum ATCC 43767]
Length = 448
Score = 329 bits (844), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 184/440 (41%), Positives = 272/440 (61%), Gaps = 29/440 (6%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLP-QKPEEVQPVR 171
+T + C +CG QW G C+ C T+ A E E +++ LP K + +
Sbjct: 5 KTAYFCQNCGTQYAQWHGQCKNCGQWNTL----AEEITE----KKSILPTSKKSKNHIIN 56
Query: 172 LLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAII 231
++EV Q + RI E+ RVLGGG+V GS+ LIGG+PG+GKSTLLLQ+A
Sbjct: 57 IIEVET---QDEPRIKTPS---EELNRVLGGGIVLGSVTLIGGEPGIGKSTLLLQLA--- 107
Query: 232 ADVHDLGEPSPVVYVSGEESVEQIGNRADRMM-IATEELFLYSSTDIEDIVEKVQPLSPR 290
L ++YVSGEES QI RADR+ + FLY+ T +E I+ + + L+P
Sbjct: 108 -----LKMKKKILYVSGEESASQIKMRADRLTDLQNPNCFLYTETSLEKIIHEAKKLAPD 162
Query: 291 ALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRV 350
+IIDSIQT+ + + S G + Q++EC++ +++FAK+T PV L GH+TK G+IAGP+V
Sbjct: 163 FVIIDSIQTIQSQLIESSPGTVSQIRECSNEIIKFAKETATPVFLVGHITKDGNIAGPKV 222
Query: 351 LEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQH 410
LEH+VD VL +G++ +RLLR+ KNRFGST E+G++EM GL+ + NPS+I +++++
Sbjct: 223 LEHMVDVVLSFDGDRNHLFRLLRAHKNRFGSTTEIGIYEMIAQGLKEIKNPSEILITKKN 282
Query: 411 SDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQA 468
D L+G AVAV ++G+R L+EIQAL + T R G A R +M+++VL K+A
Sbjct: 283 ED---LSGNAVAVTLEGNRPMLLEIQALVSTAVYGTPQRSSTGFDAKRLNMLLAVLEKRA 339
Query: 469 GLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMV 528
G +L +FLN+ G+ + A DLAV A+I SS + I F GEIGL GE+R V
Sbjct: 340 GFQLGAKDVFLNITGGIKTQDPALDLAVVASILSSNEDEAISEKYCFSGEIGLSGEIRPV 399
Query: 529 SRMEKRVSTVAKLGYRKCIV 548
+++E+R++ KLGY K +
Sbjct: 400 AQIEQRITEAEKLGYDKIFI 419
>gi|422853339|ref|ZP_16900003.1| DNA repair protein RadA [Streptococcus sanguinis SK160]
gi|325697351|gb|EGD39237.1| DNA repair protein RadA [Streptococcus sanguinis SK160]
Length = 397
Score = 329 bits (844), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 180/390 (46%), Positives = 249/390 (63%), Gaps = 13/390 (3%)
Query: 194 NEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVE 253
+E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ L V+YVSGEES E
Sbjct: 19 DEFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVST------QLSHQGTVLYVSGEESAE 72
Query: 254 QIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLM 313
QI RA+R+ E +LY+ T++++I +++ P LIIDSIQTV ++ G +
Sbjct: 73 QIKLRAERLGDIDSEFYLYAETNMQNIRTEIEKNKPDFLIIDSIQTVMSPEISSVQGSVS 132
Query: 314 QVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLR 373
QV+E T+ L++ AK NI + GH+TK G +AGPR LEH+VD VLY EGE+ ++R+LR
Sbjct: 133 QVREVTAELMQLAKTNNIATFIVGHMTKEGTLAGPRTLEHMVDTVLYFEGERQHTFRILR 192
Query: 374 SVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLI 433
+VKNRFGST+E+G+FEM GL V NPS++FL E+ + G ++ V M+G+R L
Sbjct: 193 AVKNRFGSTNEIGIFEMQSGGLVEVVNPSEVFLEERLDGA---TGSSIVVTMEGTRPILA 249
Query: 434 EIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETA 491
E+QAL R G+ +RA +I++VL K+AGL LQ +L GV L E A
Sbjct: 250 EVQALVTPTMFGNAKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPA 309
Query: 492 GDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKS 551
DLAVA AI SS+ + P FIGEIGL GE+R V+R+E+R++ AKLG+ K PK+
Sbjct: 310 IDLAVAVAIASSYKDLPTNPQECFIGEIGLTGEIRRVNRIEQRINEAAKLGFTKVYAPKN 369
Query: 552 AEKSLATLGFEQMEFIGCKNLKEVINVVFT 581
+ L + ++ IG + EV+ VF+
Sbjct: 370 SLNGLKVP--DNIQVIGVTTIGEVLKKVFS 397
>gi|238855658|ref|ZP_04645958.1| DNA repair protein RadA [Lactobacillus jensenii 269-3]
gi|260664900|ref|ZP_05865751.1| DNA repair protein RadA [Lactobacillus jensenii SJ-7A-US]
gi|313472552|ref|ZP_07813042.1| DNA repair protein RadA [Lactobacillus jensenii 1153]
gi|238831724|gb|EEQ24061.1| DNA repair protein RadA [Lactobacillus jensenii 269-3]
gi|239529990|gb|EEQ68991.1| DNA repair protein RadA [Lactobacillus jensenii 1153]
gi|260561383|gb|EEX27356.1| DNA repair protein RadA [Lactobacillus jensenii SJ-7A-US]
Length = 458
Score = 329 bits (844), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 184/474 (38%), Positives = 278/474 (58%), Gaps = 27/474 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T + C CGY + G C C S ++ E V++T Q + P
Sbjct: 5 QTRYKCRSCGYISASYLGRCPNCGSWNQFEK-------EVQEVRKTSTKQTASRLMPTTG 57
Query: 173 LE----VNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMA 228
L + K + + RIP +E+ RVLGGG+V GSLVLIGGDPG+GKSTL+LQ+
Sbjct: 58 LHEPVTLEKVKAEKETRIPTKF---SELNRVLGGGIVTGSLVLIGGDPGIGKSTLMLQIM 114
Query: 229 AIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLS 288
+ +A+ H V+YVSGEES QI RADR+ + ++LY T++ +I +++ L
Sbjct: 115 STLANEHK------VLYVSGEESASQIKLRADRLGVGDSGMYLYPETNMSNIRDQISDLK 168
Query: 289 PRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGP 348
P ++IDSIQT+ + G QV+E TS L+ AK I V + GHVTK G IAGP
Sbjct: 169 PDFVVIDSIQTMNEPSLDSMVGSAAQVREVTSELMHIAKIDQITVFIIGHVTKEGAIAGP 228
Query: 349 RVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSE 408
++LEH+VD VLY EG++ +YR+L SVKNRFG+ +E+G+FEM GL+ V+NPS IFL E
Sbjct: 229 KILEHMVDTVLYFEGDEHHAYRILHSVKNRFGAANEIGMFEMENSGLKEVTNPSSIFLDE 288
Query: 409 QHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGS--TVSRHVNGIQASRADMIISVLMK 466
+ +S G V V ++G+R L E+QAL + R +GI ++A ++++VL K
Sbjct: 289 RLPNS---TGSCVVVSLEGTRPILAEVQALVAPTAFGYAKRTTSGIDYNKAALLLAVLEK 345
Query: 467 QAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELR 526
+ L LQ +L G+ L+E A DLA+ AI SS+ + IP+ F+GE+GL GE+R
Sbjct: 346 RGNLMLQNQDAYLTTTGGIKLSEPAIDLAIVMAIGSSYKDMEIPSEDCFVGEVGLTGEVR 405
Query: 527 MVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
V+++E R++ K+G+++ +PK K A+ ++E + + + + +VF
Sbjct: 406 RVNKIESRIAEAEKIGFKRIFIPKFNMK--ASFANRKIEVVPVSTVAQALKLVF 457
>gi|289166929|ref|YP_003445196.1| DNA repair protein [Streptococcus mitis B6]
gi|288906494|emb|CBJ21324.1| DNA repair protein [Streptococcus mitis B6]
Length = 397
Score = 329 bits (844), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 177/389 (45%), Positives = 255/389 (65%), Gaps = 13/389 (3%)
Query: 195 EVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQ 254
E RVLGGG+VPGSLVLIGGDPG+GKSTLLLQ++ ++ V V+YVSGEES +Q
Sbjct: 20 EFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSQV------GTVLYVSGEESAQQ 73
Query: 255 IGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQ 314
I RA+R+ E +LY+ T+++ + +V+ + P LIIDSIQT+ ++G G + Q
Sbjct: 74 IKLRAERLGDIDSEFYLYAETNMQSVRVEVERIQPDFLIIDSIQTIMSPEISGVQGSVSQ 133
Query: 315 VKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRS 374
V+E T+ L++ AK NI + + GHVTK G +AGPR+LEH+VD VLY EGE+ ++R+LR+
Sbjct: 134 VREVTAELMQLAKTNNIAIFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGERHHTFRILRA 193
Query: 375 VKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIE 434
VKNRFGST+E+G+FEM GL V NPS++FL E+ + G ++ V M+G+R L E
Sbjct: 194 VKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGA---TGSSIVVTMEGTRPILAE 250
Query: 435 IQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAG 492
+QAL R G+ +RA +I++VL K+AGL LQ +L GV L E A
Sbjct: 251 VQALVTPTMFGNAKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAI 310
Query: 493 DLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSA 552
DLAVA AI SS+ + P F+GE+GL GE+R V+R+E+R++ AKLG+ K VPK++
Sbjct: 311 DLAVAVAIASSYKDKPTNPQECFVGELGLTGEIRRVNRIEQRINEAAKLGFTKIYVPKNS 370
Query: 553 EKSLATLGFEQMEFIGCKNLKEVINVVFT 581
+ ++++ IG ++EV+ F+
Sbjct: 371 LTGITPP--KEIQVIGVTTIQEVLKKAFS 397
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.318 0.135 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,696,731,872
Number of Sequences: 23463169
Number of extensions: 362443327
Number of successful extensions: 1264674
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 4232
Number of HSP's successfully gapped in prelim test: 1879
Number of HSP's that attempted gapping in prelim test: 1243941
Number of HSP's gapped (non-prelim): 7949
length of query: 583
length of database: 8,064,228,071
effective HSP length: 148
effective length of query: 435
effective length of database: 8,886,646,355
effective search space: 3865691164425
effective search space used: 3865691164425
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 80 (35.4 bits)