BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 007957
         (583 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1XHK|A Chain A, Crystal Structure Of M. Jannaschii Lon Proteolytic Domain
 pdb|1XHK|B Chain B, Crystal Structure Of M. Jannaschii Lon Proteolytic Domain
          Length = 187

 Score = 46.2 bits (108), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 48/92 (52%), Gaps = 5/92 (5%)

Query: 492 GDLAVAA---AICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIV 548
           GD A AA   AI S+ L+ P+    A  G + L G +  +  + +++    + G+++ I+
Sbjct: 95  GDSATAAVCLAIISALLDIPLKQDFAITGSLDLSGNVLAIGGVNEKIEAAKRYGFKRVII 154

Query: 549 PKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
           P++    +  +  E +E I  K L E++ +VF
Sbjct: 155 PEA--NXIDVIETEGIEIIPVKTLDEIVPLVF 184


>pdb|3K1J|A Chain A, Crystal Structure Of Lon Protease From Thermococcus
           Onnurineus Na1
 pdb|3K1J|B Chain B, Crystal Structure Of Lon Protease From Thermococcus
           Onnurineus Na1
          Length = 604

 Score = 37.7 bits (86), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 4/105 (3%)

Query: 478 FLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVST 537
           FL    GV     A  ++VA A+ S+    PI   +A  G + + GE+  +      +  
Sbjct: 475 FLQTYEGV--EGDAASISVATAVISALEGIPIRQDVAMTGSLSVRGEVLPIGGATPAIEA 532

Query: 538 VAKLGYRKCIVPKSAEKS--LATLGFEQMEFIGCKNLKEVINVVF 580
             + G +  I+PKS EK   L+    E+++    + + EV+ +  
Sbjct: 533 AIEAGIKMVIIPKSNEKDVFLSKDKAEKIQIFPVETIDEVLEIAL 577


>pdb|1Z0B|A Chain A, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
           E506a Mutant
          Length = 207

 Score = 35.4 bits (80), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 3/64 (4%)

Query: 490 TAGD---LAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKC 546
            AGD   +++A A+ S+    P+   +A  G + + GE+  V  + +++    + G +K 
Sbjct: 91  VAGDSASISIATAVISAIEGIPVDQSVAMTGSLSVKGEVLPVGGVTQKIEAAIQAGLKKV 150

Query: 547 IVPK 550
           I+PK
Sbjct: 151 IIPK 154


>pdb|4H0O|A Chain A, Crystal Structure Of Acetate Kinase From Entamoeba
           Histolytica
 pdb|4H0O|B Chain B, Crystal Structure Of Acetate Kinase From Entamoeba
           Histolytica
          Length = 404

 Score = 34.7 bits (78), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 7/100 (7%)

Query: 215 DPGVGKSTLL-LQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYS 273
           D  +G STL  L M+    D+ D   P  ++   G E V  I N+   ++  +E      
Sbjct: 228 DTSMGNSTLAGLVMSTRCGDI-DPTIPIDMIQQVGIEKVVDILNKKSGLLGVSE-----L 281

Query: 274 STDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLM 313
           S+D+ DI+ +++   P+A        VY++ +A + GGLM
Sbjct: 282 SSDMRDILHEIETRGPKAKTCQLAFDVYIKQLAKTIGGLM 321


>pdb|1Z0W|A Chain A, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain At
           1.2a Resolution
          Length = 207

 Score = 34.3 bits (77), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 14/57 (24%), Positives = 31/57 (54%)

Query: 494 LAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPK 550
           +++A A+ S+    P+   +A  G + + GE+  V  + +++    + G +K I+PK
Sbjct: 98  ISIATAVISAIEGIPVDQSVAMTGSLSVKGEVLPVGGVTQKIEAAIQAGLKKVIIPK 154


>pdb|1Z0E|A Chain A, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
 pdb|1Z0E|B Chain B, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
 pdb|1Z0E|C Chain C, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
 pdb|1Z0E|D Chain D, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
 pdb|1Z0E|E Chain E, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
 pdb|1Z0E|F Chain F, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
 pdb|1Z0G|A Chain A, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
 pdb|1Z0G|B Chain B, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
 pdb|1Z0G|C Chain C, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
 pdb|1Z0G|D Chain D, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
 pdb|1Z0G|E Chain E, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
 pdb|1Z0G|F Chain F, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
 pdb|1Z0T|A Chain A, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
 pdb|1Z0T|B Chain B, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
 pdb|1Z0T|C Chain C, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
 pdb|1Z0T|D Chain D, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
 pdb|1Z0T|E Chain E, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
 pdb|1Z0T|F Chain F, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
 pdb|1Z0V|A Chain A, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
 pdb|1Z0V|B Chain B, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
 pdb|1Z0V|C Chain C, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
 pdb|1Z0V|D Chain D, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
 pdb|1Z0V|E Chain E, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
 pdb|1Z0V|F Chain F, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
          Length = 205

 Score = 34.3 bits (77), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 14/57 (24%), Positives = 31/57 (54%)

Query: 494 LAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPK 550
           +++A A+ S+    P+   +A  G + + GE+  V  + +++    + G +K I+PK
Sbjct: 96  ISIATAVISAIEGIPVDQSVAMTGSLSVKGEVLPVGGVTQKIEAAIQAGLKKVIIPK 152


>pdb|1Z0C|A Chain A, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
           D508a Mutant
          Length = 207

 Score = 34.3 bits (77), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 14/57 (24%), Positives = 31/57 (54%)

Query: 494 LAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPK 550
           +++A A+ S+    P+   +A  G + + GE+  V  + +++    + G +K I+PK
Sbjct: 98  ISIATAVISAIEGIPVDQSVAMTGSLSVKGEVLPVGGVTQKIEAAIQAGLKKVIIPK 154


>pdb|1C4Z|A Chain A, Structure Of E6ap: Insights Into Ubiquitination Pathway
 pdb|1C4Z|B Chain B, Structure Of E6ap: Insights Into Ubiquitination Pathway
 pdb|1C4Z|C Chain C, Structure Of E6ap: Insights Into Ubiquitination Pathway
 pdb|1D5F|A Chain A, Structure Of An E6ap-Ubch7 Complex: Insights Into The
           Ubiquitination Pathway
 pdb|1D5F|B Chain B, Structure Of An E6ap-Ubch7 Complex: Insights Into The
           Ubiquitination Pathway
 pdb|1D5F|C Chain C, Structure Of An E6ap-Ubch7 Complex: Insights Into The
           Ubiquitination Pathway
          Length = 358

 Score = 31.6 bits (70), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 4/42 (9%)

Query: 236 DLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDI 277
           DLG+  PV+Y S ++ +E  GN  D MMI     F  S TD+
Sbjct: 133 DLGDSHPVLYQSLKDLLEYEGNVEDDMMIT----FQISQTDL 170


>pdb|1G8Y|A Chain A, Crystal Structure Of The Hexameric Replicative Helicase
           Repa Of Plasmid Rsf1010
 pdb|1G8Y|B Chain B, Crystal Structure Of The Hexameric Replicative Helicase
           Repa Of Plasmid Rsf1010
 pdb|1G8Y|C Chain C, Crystal Structure Of The Hexameric Replicative Helicase
           Repa Of Plasmid Rsf1010
 pdb|1G8Y|D Chain D, Crystal Structure Of The Hexameric Replicative Helicase
           Repa Of Plasmid Rsf1010
 pdb|1G8Y|E Chain E, Crystal Structure Of The Hexameric Replicative Helicase
           Repa Of Plasmid Rsf1010
 pdb|1G8Y|F Chain F, Crystal Structure Of The Hexameric Replicative Helicase
           Repa Of Plasmid Rsf1010
 pdb|1G8Y|G Chain G, Crystal Structure Of The Hexameric Replicative Helicase
           Repa Of Plasmid Rsf1010
 pdb|1G8Y|H Chain H, Crystal Structure Of The Hexameric Replicative Helicase
           Repa Of Plasmid Rsf1010
 pdb|1G8Y|I Chain I, Crystal Structure Of The Hexameric Replicative Helicase
           Repa Of Plasmid Rsf1010
 pdb|1G8Y|J Chain J, Crystal Structure Of The Hexameric Replicative Helicase
           Repa Of Plasmid Rsf1010
 pdb|1G8Y|K Chain K, Crystal Structure Of The Hexameric Replicative Helicase
           Repa Of Plasmid Rsf1010
 pdb|1G8Y|L Chain L, Crystal Structure Of The Hexameric Replicative Helicase
           Repa Of Plasmid Rsf1010
 pdb|1NLF|A Chain A, Crystal Structure Of Dna Helicase Repa In Complex With
           Sulfate At 1.95 A Resolution
 pdb|1NLF|B Chain B, Crystal Structure Of Dna Helicase Repa In Complex With
           Sulfate At 1.95 A Resolution
 pdb|1NLF|C Chain C, Crystal Structure Of Dna Helicase Repa In Complex With
           Sulfate At 1.95 A Resolution
 pdb|1OLO|A Chain A, Hexameric Replicative Dna Helicase Repa From Plasmid
           Rsf1010 - Cubic Crystal Structure
 pdb|1OLO|B Chain B, Hexameric Replicative Dna Helicase Repa From Plasmid
           Rsf1010 - Cubic Crystal Structure
          Length = 279

 Score = 31.2 bits (69), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 30/47 (63%), Gaps = 5/47 (10%)

Query: 217 GVGKSTLLLQMAAIIA---DVHDLGE-PS-PVVYVSGEESVEQIGNR 258
           G GKS L LQ+AA IA   D+ ++GE P+ PV+Y+  E+    I +R
Sbjct: 40  GAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTAIHHR 86


>pdb|3IAG|C Chain C, Csl (Rbp-Jk) Bound To Hes-1 Nonconsensus Site
          Length = 422

 Score = 30.4 bits (67), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 3/73 (4%)

Query: 370 RLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSR 429
             + SVK  +G++D++GVF   +  ++ +S PSK   S +++D    +G  VA + +  R
Sbjct: 112 HFMLSVKMFYGNSDDIGVFLSKR--IKVISKPSKKKQSLKNADLCIASGTKVA-LFNRLR 168

Query: 430 SFLIEIQALCVSG 442
           S  +  + L V G
Sbjct: 169 SQTVSTRYLHVEG 181


>pdb|3NBN|A Chain A, Crystal Structure Of A Dimer Of Notch Transcription
           Complex Trimers On Hes1 Dna
 pdb|3NBN|D Chain D, Crystal Structure Of A Dimer Of Notch Transcription
           Complex Trimers On Hes1 Dna
          Length = 433

 Score = 30.4 bits (67), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 3/73 (4%)

Query: 370 RLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSR 429
             + SVK  +G++D++GVF   +  ++ +S PSK   S +++D    +G  VA + +  R
Sbjct: 117 HFMLSVKMFYGNSDDIGVFLSKR--IKVISKPSKKKQSLKNADLCIASGTKVA-LFNRLR 173

Query: 430 SFLIEIQALCVSG 442
           S  +  + L V G
Sbjct: 174 SQTVSTRYLHVEG 186


>pdb|2F8X|C Chain C, Crystal Structure Of Activated Notch, Csl And Maml On
           Hes-1 Promoter Dna Sequence
 pdb|3V79|C Chain C, Structure Of Human Notch1 Transcription Complex Including
           Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
          Length = 434

 Score = 30.4 bits (67), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 3/73 (4%)

Query: 370 RLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSR 429
             + SVK  +G++D++GVF   +  ++ +S PSK   S +++D    +G  VA + +  R
Sbjct: 117 HFMLSVKMFYGNSDDIGVFLSKR--IKVISKPSKKKQSLKNADLCIASGTKVA-LFNRLR 173

Query: 430 SFLIEIQALCVSG 442
           S  +  + L V G
Sbjct: 174 SQTVSTRYLHVEG 186


>pdb|3BRG|C Chain C, Csl (Rbp-Jk) Bound To Dna
          Length = 427

 Score = 30.4 bits (67), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 3/73 (4%)

Query: 370 RLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSR 429
             + SVK  +G++D++GVF   +  ++ +S PSK   S +++D    +G  VA + +  R
Sbjct: 117 HFMLSVKMFYGNSDDIGVFLSKR--IKVISKPSKKKQSLKNADLCIASGTKVA-LFNRLR 173

Query: 430 SFLIEIQALCVSG 442
           S  +  + L V G
Sbjct: 174 SQTVSTRYLHVEG 186


>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
           Domain
 pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
           Domain
 pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
           Domain
 pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
           Domain
 pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
           Domain
 pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
           Domain
          Length = 543

 Score = 29.6 bits (65), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 3/90 (3%)

Query: 491 AGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPK 550
           A  + +A A+ S+     +   +   GEI L G +  +  ++++     + G    I PK
Sbjct: 438 AAGITMATALVSALTGRAVSREVGMTGEITLRGRVLPIGGLKEKALGAHRAGLTTIIAPK 497

Query: 551 SAEKSLATLG---FEQMEFIGCKNLKEVIN 577
             EK +  +     E + FI   +L EV+ 
Sbjct: 498 DNEKDIEDIPESVREGLTFILASHLDEVLE 527


>pdb|2X36|A Chain A, Structure Of The Proteolytic Domain Of The Human
           Mitochondrial Lon Protease
 pdb|2X36|B Chain B, Structure Of The Proteolytic Domain Of The Human
           Mitochondrial Lon Protease
 pdb|2X36|D Chain D, Structure Of The Proteolytic Domain Of The Human
           Mitochondrial Lon Protease
 pdb|2X36|E Chain E, Structure Of The Proteolytic Domain Of The Human
           Mitochondrial Lon Protease
 pdb|2X36|F Chain F, Structure Of The Proteolytic Domain Of The Human
           Mitochondrial Lon Protease
 pdb|2X36|C Chain C, Structure Of The Proteolytic Domain Of The Human
           Mitochondrial Lon Protease
          Length = 207

 Score = 29.3 bits (64), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 18/88 (20%), Positives = 41/88 (46%), Gaps = 3/88 (3%)

Query: 496 VAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEK- 554
           +  A+ S  +  P+   +A  GE+ L G++  V  ++++     + G    ++P   +K 
Sbjct: 108 IVTALLSLAMGRPVRQNLAMTGEVSLTGKILPVGGIKEKTIAAKRAGVTCIVLPAENKKD 167

Query: 555 --SLATLGFEQMEFIGCKNLKEVINVVF 580
              LA    E +E    ++ +E+ ++ F
Sbjct: 168 FYDLAAFITEGLEVHFVEHYREIFDIAF 195


>pdb|4FS7|A Chain A, Crystal Structure Of A Hypothetical Leucine Rich Repeat
           Protein (Bacova_04585) From Bacteroides Ovatus Atcc 8483
           At 1.19 A Resolution
          Length = 394

 Score = 28.9 bits (63), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 1/76 (1%)

Query: 501 CSSFLEFPIPNGIAFIGEIGLGGELRMVS-RMEKRVSTVAKLGYRKCIVPKSAEKSLATL 559
           CSS  E  + + + FIGE        +VS  +   V  + K  +R C    +    L+  
Sbjct: 296 CSSLTEVKLLDSVKFIGEEAFESCTSLVSIDLPYLVEEIGKRSFRGCTSLSNINFPLSLR 355

Query: 560 GFEQMEFIGCKNLKEV 575
                 F GC NLK+V
Sbjct: 356 KIGANAFQGCINLKKV 371


>pdb|3SK9|A Chain A, Crystal Structure Of The Thermus Thermophilus Cas3 Hd
           Domain
 pdb|3SKD|A Chain A, Crystal Structure Of The Thermus Thermophilus Cas3 Hd
           Domain In The Presence Of Ni2+
          Length = 265

 Score = 28.9 bits (63), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 18/31 (58%)

Query: 225 LQMAAIIADVHDLGEPSPVVYVSGEESVEQI 255
           L  AA +  +HDLG+ SPV     EE  E++
Sbjct: 64  LAWAAALVGLHDLGKASPVFQAGWEEGKERV 94


>pdb|2CVF|A Chain A, Crystal Structure Of The Radb Recombinase
 pdb|2CVF|B Chain B, Crystal Structure Of The Radb Recombinase
 pdb|2CVH|A Chain A, Crystal Structure Of The Radb Recombinase
 pdb|2CVH|B Chain B, Crystal Structure Of The Radb Recombinase
          Length = 220

 Score = 28.9 bits (63), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 42/195 (21%), Positives = 79/195 (40%), Gaps = 22/195 (11%)

Query: 219 GKSTLLLQMAAI----IADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSS 274
           GK+TL LQ   +    +A V   G  SP      E  V+    R      A     L++ 
Sbjct: 32  GKTTLALQTGLLSGKKVAYVDTEGGFSP------ERLVQMAETRGLNPEEALSRFILFTP 85

Query: 275 TDIEDIVEKVQPLSPRA------LIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKK 328
           +D ++    +  L          +++DSI T + R     +G + ++      LL  A+K
Sbjct: 86  SDFKEQRRVIGSLKKTVDSNFALVVVDSI-TAHYRAEENRSGLIAELSRQLQVLLWIARK 144

Query: 329 TNIPVLLAG--HVTKSGDIAGP---RVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTD 383
            NIPV++    H     ++  P   + L +    +L ++       R+    ++RF    
Sbjct: 145 HNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKLPKPGLRVAVLERHRFRPEG 204

Query: 384 ELGVFEMSQLGLQAV 398
            +  F +++ G++ V
Sbjct: 205 LMAYFRITERGIEDV 219


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.135    0.391 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,334,437
Number of Sequences: 62578
Number of extensions: 583093
Number of successful extensions: 1317
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1305
Number of HSP's gapped (non-prelim): 22
length of query: 583
length of database: 14,973,337
effective HSP length: 104
effective length of query: 479
effective length of database: 8,465,225
effective search space: 4054842775
effective search space used: 4054842775
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)