BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007957
(583 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q48761|RADA_LISMO DNA repair protein RadA homolog OS=Listeria monocytogenes serovar
1/2a (strain ATCC BAA-679 / EGD-e) GN=radA PE=3 SV=2
Length = 457
Score = 359 bits (922), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 191/448 (42%), Positives = 276/448 (61%), Gaps = 22/448 (4%)
Query: 109 GKANRTN-WVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEV 167
KA RT +VC CGY +W G C C M T P K +
Sbjct: 2 AKAKRTTKFVCQACGYESAKWMGKCPNCNEWNQMVEALEPSKKSRSAFNHTGEPSKATPI 61
Query: 168 QPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQM 227
+ ++ K+++ +P E+ RVLGGG+VPGS+VL+GGDPG+GKSTLLLQ+
Sbjct: 62 TQI----ASETEKRVETNMP-------ELNRVLGGGVVPGSMVLVGGDPGIGKSTLLLQV 110
Query: 228 AAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPL 287
+A + + V+Y+SGEES++Q RA+R+ ++ + L++Y+ T++E + E + +
Sbjct: 111 SAQLTLTN-----KKVLYISGEESIKQTKLRAERLQVSGDNLYVYAETNLEAVQETIDFV 165
Query: 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAG 347
P ++IDSIQTVY V +AG + QV+ECT+ L+R AK NI + + GHVTK G IAG
Sbjct: 166 KPDFVVIDSIQTVYHSDVTSAAGSVSQVRECTATLMRIAKMQNIAIFIVGHVTKEGAIAG 225
Query: 348 PRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLS 407
PR+LEH+VD VLY EGE+ +YR+LR+VKNRFGST+E+G+FEM +GL V+NPS++FL
Sbjct: 226 PRLLEHMVDTVLYFEGERHHAYRILRAVKNRFGSTNEMGIFEMRDVGLVEVANPSEVFLE 285
Query: 408 EQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLM 465
E+ E +G V M+G+R L+EIQAL R GI ++ +I++VL
Sbjct: 286 ERL---EGASGSTVVASMEGTRPVLVEIQALVSPTMFGNAKRMATGIDYNKVSLIMAVLE 342
Query: 466 KQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGEL 525
K+ GL LQ +L GV L E A DLAVA ++ SS+ + P + FIGE+GL GE+
Sbjct: 343 KRVGLMLQNQDAYLKAAGGVKLDEPAVDLAVAVSVASSYRDKPTRSTDCFIGELGLTGEI 402
Query: 526 RMVSRMEKRVSTVAKLGYRKCIVPKSAE 553
R V+R+E+RV AKLG+++ +PK+ E
Sbjct: 403 RRVARIEQRVQEAAKLGFKRIFIPKNNE 430
>sp|Q92F42|RADA_LISIN DNA repair protein RadA homolog OS=Listeria innocua serovar 6a
(strain CLIP 11262) GN=radA PE=3 SV=1
Length = 457
Score = 359 bits (921), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 191/448 (42%), Positives = 276/448 (61%), Gaps = 22/448 (4%)
Query: 109 GKANRTN-WVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEV 167
KA RT +VC CGY +W G C C M T P K +
Sbjct: 2 AKAKRTTKFVCQSCGYESAKWMGKCPNCNEWNQMVEALEPSKKSRSAFNHTGEPSKATPI 61
Query: 168 QPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQM 227
+ ++ +++ +P E+ RVLGGG+VPGS+VL+GGDPG+GKSTLLLQ+
Sbjct: 62 TQI----ASEEEARVETNMP-------ELNRVLGGGVVPGSMVLVGGDPGIGKSTLLLQV 110
Query: 228 AAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPL 287
+A + + V+Y+SGEES++Q RA+R+ ++ + L++Y+ T++E + E + +
Sbjct: 111 SAQLTLTN-----KKVLYISGEESIKQTKLRAERLQVSGDNLYVYAETNLEAVQETIDFV 165
Query: 288 SPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAG 347
P ++IDSIQTVY V +AG + QV+ECT+AL+R AK NI + + GHVTK G IAG
Sbjct: 166 KPDFVVIDSIQTVYHPDVTSAAGSVSQVRECTAALMRIAKMQNIAIFIVGHVTKEGAIAG 225
Query: 348 PRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLS 407
PR+LEH+VD VLY EGE+ +YR+LR+VKNRFGST+E+G+FEM +GL V+NPS++FL
Sbjct: 226 PRLLEHMVDTVLYFEGERHHAYRILRAVKNRFGSTNEMGIFEMRDIGLVEVANPSEVFLE 285
Query: 408 EQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLM 465
E+ E +G V M+G+R L+EIQAL R GI ++ +I++VL
Sbjct: 286 ERL---EGASGSTVVASMEGTRPVLVEIQALVSPTMFGNAKRMATGIDYNKVSLIMAVLE 342
Query: 466 KQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGEL 525
K+ GL LQ +L GV L E A DLAVA ++ SS+ + P + FIGE+GL GE+
Sbjct: 343 KRVGLMLQNQDAYLKAAGGVKLDEPAVDLAVAVSVASSYRDKPTRSTDCFIGELGLTGEI 402
Query: 526 RMVSRMEKRVSTVAKLGYRKCIVPKSAE 553
R V+R+E+RV AKLG+++ +PK+ E
Sbjct: 403 RRVARIEQRVQEAAKLGFKRIFIPKNNE 430
>sp|P37572|RADA_BACSU DNA repair protein RadA homolog OS=Bacillus subtilis (strain 168)
GN=radA PE=3 SV=1
Length = 458
Score = 356 bits (914), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 199/470 (42%), Positives = 279/470 (59%), Gaps = 26/470 (5%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKR---YSAGESDEGPVVQRTWLPQKPEEVQ 168
++ ++C CGY +W G C C + TM A + QKP +
Sbjct: 4 TKSKFICQSCGYESPKWMGKCPGCGAWNTMVEEMIKKAPANRRAAFSHSVQTVQKPSPIT 63
Query: 169 PVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMA 228
+ E + QL E RVLGGG+V GSLVLIGGDPG+GKSTLLLQ++
Sbjct: 64 SIETSEEPRVKTQL-----------GEFNRVLGGGVVKGSLVLIGGDPGIGKSTLLLQVS 112
Query: 229 AIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLS 288
A ++ G + V+Y+SGEESV+Q RADR+ I L + S TD+E I +Q ++
Sbjct: 113 AQLS-----GSSNSVLYISGEESVKQTKLRADRLGINNPSLHVLSETDMEYISSAIQEMN 167
Query: 289 PRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGP 348
P +++DSIQTVY + + G + QV+ECT+ L++ AK IP+ + GHVTK G IAGP
Sbjct: 168 PSFVVVDSIQTVYQSDITSAPGSVSQVRECTAELMKIAKTKGIPIFIVGHVTKEGSIAGP 227
Query: 349 RVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSE 408
R+LEH+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM + GL V NPS+IFL E
Sbjct: 228 RLLEHMVDTVLYFEGERHHTFRILRAVKNRFGSTNEMGIFEMREEGLTEVLNPSEIFLEE 287
Query: 409 QHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISVLMK 466
+ + S AG ++ M+G+R L+EIQAL S R GI +R ++++VL K
Sbjct: 288 RSAGS---AGSSITASMEGTRPILVEIQALISPTSFGNPRRMATGIDHNRVSLLMAVLEK 344
Query: 467 QAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELR 526
+ GL LQ +L V GV L E A DLA+ +I SSF + P FIGE+GL GE+R
Sbjct: 345 RVGLLLQNQDAYLKVAGGVKLDEPAIDLAIVISIASSFRDTPPNPADCFIGEVGLTGEVR 404
Query: 527 MVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVI 576
VSR+E+RV AKLG+++ I+P + + +E IG N+ E +
Sbjct: 405 RVSRIEQRVKEAAKLGFKRMIIPAANLDGWTKP--KGIEVIGVANVAEAL 452
>sp|Q9KGG1|RADA_BACHD DNA repair protein RadA homolog OS=Bacillus halodurans (strain ATCC
BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
GN=radA PE=3 SV=1
Length = 457
Score = 355 bits (911), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 196/478 (41%), Positives = 300/478 (62%), Gaps = 35/478 (7%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTM-KRYSAGESDEGPVVQRTWLPQ-----KPE 165
+T ++C +CGY +W G C C+S +M + ++ ++ R+++ KP
Sbjct: 4 KKTKFMCQECGYESAKWMGKCPGCQSWNSMVEEFTEVKAKS----SRSYVTSGAGIAKP- 58
Query: 166 EVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLL 225
QP+ +E ++ + RI S E+ RVLGGG+VPGSLVL+GGDPG+GKSTLLL
Sbjct: 59 --QPITKVE-----REQEPRIDTSM---KELNRVLGGGIVPGSLVLVGGDPGIGKSTLLL 108
Query: 226 QMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQ 285
Q++A +AD+ V+Y+SGEESV+Q R+DR+ + ++ L++ + TD+E I + +
Sbjct: 109 QLSARLADLKQ-----RVLYISGEESVKQTKIRSDRLGVLSDHLYVLAETDMEKIEQAIG 163
Query: 286 PLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDI 345
+ P +IIDSIQTVY + + G + QV+ECT++ +R AK T + + + GHVTK G I
Sbjct: 164 EVDPTLVIIDSIQTVYQDEITSAPGSVAQVRECTASFMRIAKTTGVAIFIVGHVTKQGAI 223
Query: 346 AGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIF 405
AGP++LEH+VD+VLY EGE+ +YR+LR+VKNRFGST+E+G+FEM + GL+ V+NPS+IF
Sbjct: 224 AGPKLLEHMVDSVLYFEGERHHTYRILRAVKNRFGSTNEMGIFEMKESGLEEVANPSEIF 283
Query: 406 LSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALC--VSGSTVSRHVNGIQASRADMIISV 463
L ++ S +AG V M+G+R L+E+QAL S R G+ +R ++++V
Sbjct: 284 LEDRSSG---VAGSTVVASMEGTRPVLVELQALISPTSFGNPRRMATGVDHNRISLLMAV 340
Query: 464 LMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGG 523
L K+ G+ LQ ++NV GV L E A DL +A +I SSF IGEIGL G
Sbjct: 341 LEKRVGMLLQNQDAYVNVAGGVRLDEPAIDLGIAVSIASSFRNQHTNPHEVVIGEIGLTG 400
Query: 524 ELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGF-EQMEFIGCKNLKEVINVVF 580
E+R VSR+++RV+ AKLG+++ I+P +K+L +E IG +++ + V
Sbjct: 401 EVRRVSRIDQRVNEAAKLGFKRVIIP---DKNLGGWTIPSTIEVIGVSTVQDALEVTL 455
>sp|Q9A1K1|RADA_STRP1 DNA repair protein RadA homolog OS=Streptococcus pyogenes serotype
M1 GN=radA PE=3 SV=1
Length = 453
Score = 338 bits (868), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 187/442 (42%), Positives = 270/442 (61%), Gaps = 22/442 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+ ++C +CGY ++ G C C + + + + V E+ +PV+L
Sbjct: 5 KATFICQECGYQSPKYLGRCPNCSAWSSFVEEVEVKEVKNARVSLAG-----EKSRPVKL 59
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
+V+ + + + + +E RVLGGG+VPGSL+LIGGDPG+GKSTLLLQ++ +A
Sbjct: 60 KDVDN----ISYHRTQTDM--SEFNRVLGGGVVPGSLILIGGDPGIGKSTLLLQVSTQLA 113
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+ V+YVSGEES EQI R++R+ E +LY+ T+++ I +++ + P L
Sbjct: 114 N------KGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQAIRTEIENIKPDFL 167
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQT+ + G G + QV+E T+ L++ AK NI + GHVTK G +AGPR+LE
Sbjct: 168 IIDSIQTIMSPDITGVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTLAGPRMLE 227
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS++FL E+
Sbjct: 228 HMVDTVLYFEGERHHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDG 287
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
+ G AV V M+GSR L E+Q+L R G+ +R +I++VL K+ GL
Sbjct: 288 A---TGSAVVVTMEGSRPILAEVQSLVTPTVFGNARRTTTGLDFNRVSLIMAVLEKRCGL 344
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ +L GV L E A DLAVA AI SS+ E P AF+GEIGL GE+R V+R
Sbjct: 345 LLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTSPQEAFLGEIGLTGEIRRVTR 404
Query: 531 MEKRVSTVAKLGYRKCIVPKSA 552
+E+R++ AKLG+ K PK+A
Sbjct: 405 IEQRINEAAKLGFTKVYAPKNA 426
>sp|Q8P2Q5|RADA_STRP8 DNA repair protein RadA homolog OS=Streptococcus pyogenes serotype
M18 (strain MGAS8232) GN=radA PE=3 SV=1
Length = 453
Score = 338 bits (868), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 187/442 (42%), Positives = 270/442 (61%), Gaps = 22/442 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+ ++C +CGY ++ G C C + + + + V E+ +PV+L
Sbjct: 5 KATFICQECGYQSPKYLGRCPNCSAWSSFVEEVEVKEVKNARVSLAG-----EKSRPVKL 59
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
+V+ + + + + +E RVLGGG+VPGSL+LIGGDPG+GKSTLLLQ++ +A
Sbjct: 60 KDVDN----ISYHRTQTDM--SEFNRVLGGGVVPGSLILIGGDPGIGKSTLLLQVSTQLA 113
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+ V+YVSGEES EQI R++R+ E +LY+ T+++ I +++ + P L
Sbjct: 114 N------KGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQAIRTEIENIKPDFL 167
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQT+ + G G + QV+E T+ L++ AK NI + GHVTK G +AGPR+LE
Sbjct: 168 IIDSIQTIMSPDITGVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTLAGPRMLE 227
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS++FL E+
Sbjct: 228 HMVDTVLYFEGERHHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDG 287
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
+ G AV V M+GSR L E+Q+L R G+ +R +I++VL K+ GL
Sbjct: 288 A---TGSAVVVTMEGSRPILAEVQSLVTPTVFGNARRTTTGLDFNRVSLIMAVLEKRCGL 344
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ +L GV L E A DLAVA AI SS+ E P AF+GEIGL GE+R V+R
Sbjct: 345 LLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTSPQEAFLGEIGLTGEIRRVTR 404
Query: 531 MEKRVSTVAKLGYRKCIVPKSA 552
+E+R++ AKLG+ K PK+A
Sbjct: 405 IEQRINEAAKLGFTKVYAPKNA 426
>sp|Q5XDZ7|RADA_STRP6 DNA repair protein RadA homolog OS=Streptococcus pyogenes serotype
M6 (strain ATCC BAA-946 / MGAS10394) GN=radA PE=3 SV=1
Length = 453
Score = 338 bits (868), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 187/442 (42%), Positives = 270/442 (61%), Gaps = 22/442 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+ ++C +CGY ++ G C C + + + + V E+ +PV+L
Sbjct: 5 KATFICQECGYQSPKYLGRCPNCSAWSSFVEEVEVKEVKNARVSLAG-----EKSRPVKL 59
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
+V+ + + + + +E RVLGGG+VPGSL+LIGGDPG+GKSTLLLQ++ +A
Sbjct: 60 KDVDN----ISYHRTQTDM--SEFNRVLGGGVVPGSLILIGGDPGIGKSTLLLQVSTQLA 113
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+ V+YVSGEES EQI R++R+ E +LY+ T+++ I +++ + P L
Sbjct: 114 N------KGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQAIRTEIENIKPDFL 167
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQT+ + G G + QV+E T+ L++ AK NI + GHVTK G +AGPR+LE
Sbjct: 168 IIDSIQTIMSPDITGVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTLAGPRMLE 227
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS++FL E+
Sbjct: 228 HMVDTVLYFEGERHHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDG 287
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
+ G AV V M+GSR L E+Q+L R G+ +R +I++VL K+ GL
Sbjct: 288 A---TGSAVVVTMEGSRPILAEVQSLVTPTVFGNARRTTTGLDFNRVSLIMAVLEKRCGL 344
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ +L GV L E A DLAVA AI SS+ E P AF+GEIGL GE+R V+R
Sbjct: 345 LLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTSPQEAFLGEIGLTGEIRRVTR 404
Query: 531 MEKRVSTVAKLGYRKCIVPKSA 552
+E+R++ AKLG+ K PK+A
Sbjct: 405 IEQRINEAAKLGFTKVYAPKNA 426
>sp|P0DD79|RADA_STRPQ DNA repair protein RadA homolog OS=Streptococcus pyogenes serotype
M3 (strain SSI-1) GN=radA PE=3 SV=1
Length = 453
Score = 337 bits (864), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 186/442 (42%), Positives = 269/442 (60%), Gaps = 22/442 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+ ++C +CGY ++ G C C + + + + V E+ +PV+L
Sbjct: 5 KATFICQECGYQSPKYLGRCPNCSAWSSFVEEVEVKEVKNARVSLAG-----EKSRPVKL 59
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
+V+ + + + + +E RVLGGG+VPGSL+LIGGDPG+GKSTLLLQ++ +A
Sbjct: 60 KDVDN----ISYHRTQTDM--SEFNRVLGGGVVPGSLILIGGDPGIGKSTLLLQVSTQLA 113
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+ V+Y SGEES EQI R++R+ E +LY+ T+++ I +++ + P L
Sbjct: 114 N------KGTVLYASGEESAEQIKLRSERLGDIDNEFYLYAETNMQAIRTEIENIKPDFL 167
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQT+ + G G + QV+E T+ L++ AK NI + GHVTK G +AGPR+LE
Sbjct: 168 IIDSIQTIMSPDITGVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTLAGPRMLE 227
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS++FL E+
Sbjct: 228 HMVDTVLYFEGERHHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDG 287
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
+ G AV V M+GSR L E+Q+L R G+ +R +I++VL K+ GL
Sbjct: 288 A---TGSAVVVTMEGSRPILAEVQSLVTPTVFGNARRTTTGLDFNRVSLIMAVLEKRCGL 344
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ +L GV L E A DLAVA AI SS+ E P AF+GEIGL GE+R V+R
Sbjct: 345 LLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTSPQEAFLGEIGLTGEIRRVTR 404
Query: 531 MEKRVSTVAKLGYRKCIVPKSA 552
+E+R++ AKLG+ K PK+A
Sbjct: 405 IEQRINEAAKLGFTKVYAPKNA 426
>sp|P0DD78|RADA_STRP3 DNA repair protein RadA homolog OS=Streptococcus pyogenes serotype
M3 (strain ATCC BAA-595 / MGAS315) GN=radA PE=3 SV=1
Length = 453
Score = 337 bits (864), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 186/442 (42%), Positives = 269/442 (60%), Gaps = 22/442 (4%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+ ++C +CGY ++ G C C + + + + V E+ +PV+L
Sbjct: 5 KATFICQECGYQSPKYLGRCPNCSAWSSFVEEVEVKEVKNARVSLAG-----EKSRPVKL 59
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
+V+ + + + + +E RVLGGG+VPGSL+LIGGDPG+GKSTLLLQ++ +A
Sbjct: 60 KDVDN----ISYHRTQTDM--SEFNRVLGGGVVPGSLILIGGDPGIGKSTLLLQVSTQLA 113
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
+ V+Y SGEES EQI R++R+ E +LY+ T+++ I +++ + P L
Sbjct: 114 N------KGTVLYASGEESAEQIKLRSERLGDIDNEFYLYAETNMQAIRTEIENIKPDFL 167
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
IIDSIQT+ + G G + QV+E T+ L++ AK NI + GHVTK G +AGPR+LE
Sbjct: 168 IIDSIQTIMSPDITGVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTLAGPRMLE 227
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD VLY EGE+ ++R+LR+VKNRFGST+E+G+FEM GL V NPS++FL E+
Sbjct: 228 HMVDTVLYFEGERHHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDG 287
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAGL 470
+ G AV V M+GSR L E+Q+L R G+ +R +I++VL K+ GL
Sbjct: 288 A---TGSAVVVTMEGSRPILAEVQSLVTPTVFGNARRTTTGLDFNRVSLIMAVLEKRCGL 344
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
LQ +L GV L E A DLAVA AI SS+ E P AF+GEIGL GE+R V+R
Sbjct: 345 LLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTSPQEAFLGEIGLTGEIRRVTR 404
Query: 531 MEKRVSTVAKLGYRKCIVPKSA 552
+E+R++ AKLG+ K PK+A
Sbjct: 405 IEQRINEAAKLGFTKVYAPKNA 426
>sp|P74391|RADA_SYNY3 DNA repair protein RadA homolog OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=radA PE=3 SV=1
Length = 505
Score = 337 bits (863), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 192/462 (41%), Positives = 284/462 (61%), Gaps = 36/462 (7%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKR-----YSAGESDEGPVVQRTWLPQKPEEV 167
RT +VCS CG QW+G C C G+++ S+G + Q++ K +
Sbjct: 5 RTKFVCSACGADHAQWFGRCPKCHEYGSLQEEIVNAVSSGTNHRSLGAQKSR-SSKVKTG 63
Query: 168 QPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQM 227
QP L ++ ++ R LSG E+ RVLGGG+VPG+L+LIGGDPG+GKSTLLLQ+
Sbjct: 64 QPQAALTFSQIRQENQGRF-LSGY--GELDRVLGGGIVPGALILIGGDPGIGKSTLLLQV 120
Query: 228 AAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATE-----------------ELF 270
A +A ++YVS EES +QI RA R+ I LF
Sbjct: 121 AFQLAT-----RLPRILYVSAEESGQQIKLRATRLGITQTVEPSQAQDGINNLAHDGNLF 175
Query: 271 LYSSTDIEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTN 330
+ T+++DI+ +++ L P+ IIDSIQ +Y ++ + G + QV+ECT L++ AK+ +
Sbjct: 176 VLPETNLDDILRELEALQPQVAIIDSIQNLYFPALSSAPGSVSQVRECTGLLMQLAKRDH 235
Query: 331 IPVLLAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEM 390
I + + GHVTK G IAGP+VLEH+VD VLY +G++F+S+RLLRSVKNRFG+T E+G+FEM
Sbjct: 236 ISLFIVGHVTKEGAIAGPKVLEHLVDTVLYFQGDRFASHRLLRSVKNRFGATQEIGIFEM 295
Query: 391 SQLGLQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVS--RH 448
Q GLQ V NPS++FL S EF++G A+ V +G+R ++E+QAL S S R
Sbjct: 296 VQSGLQEVLNPSQLFLG---SREEFMSGTAITVACEGTRPLVVELQALVSPTSYASPRRS 352
Query: 449 VNGIQASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFP 508
G+ +R +++VL K+ G+ L + +L+V G+ + E A DLA+A A+ +SF +
Sbjct: 353 TTGVDYNRLLQVLAVLEKRLGVPLSKLDAYLSVAGGLEVEEPAVDLAMAIALVASFRDRV 412
Query: 509 IPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPK 550
+ + +GEIGLGG++R VS++E R+ AKLG++K IVPK
Sbjct: 413 VDPTMIILGEIGLGGQIRPVSQLEIRLKEAAKLGFKKAIVPK 454
>sp|O84300|RADA_CHLTR DNA repair protein RadA homolog OS=Chlamydia trachomatis (strain
D/UW-3/Cx) GN=radA PE=3 SV=1
Length = 454
Score = 317 bits (813), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 173/470 (36%), Positives = 273/470 (58%), Gaps = 25/470 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTM-KRYSAGESDEGPVVQRTWLPQKPEEVQPVR 171
+T W C++CG +W G C C T+ + +A + + + +P
Sbjct: 6 KTQWTCTECGTHSPKWLGQCSGCLQWNTLVEERTAPKLNTSSYSSSSSIP---------- 55
Query: 172 LLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAII 231
+ +N Q + RI N R+LGGG V GSL L+GG+PG+GKSTLLLQ+++
Sbjct: 56 -IPLNNVEFQEEIRIHTQAQGWN---RLLGGGTVRGSLALLGGEPGIGKSTLLLQISSQF 111
Query: 232 ADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRA 291
A V+YV GEESV Q RA R+ I++ +FL+ T++EDI +++ ++P
Sbjct: 112 A-----AAGHKVLYVCGEESVSQTSLRAQRLQISSNNIFLFPETNLEDIKQQIDNIAPDI 166
Query: 292 LIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVL 351
L+IDSIQ ++ ++ + G + QV+E T+ L+ AK+ I + GHVTKSG+IAGPR+L
Sbjct: 167 LVIDSIQIIFSPSLSSAPGSVAQVRETTAELMHIAKQKQITTFIIGHVTKSGEIAGPRIL 226
Query: 352 EHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHS 411
EH+VD VLY EG ++YR++RSVKNRFG T+EL + M GL+ V NPS +FL E+
Sbjct: 227 EHLVDTVLYFEGNAHANYRMIRSVKNRFGPTNELLILSMHTDGLREVENPSGLFLQEKIV 286
Query: 412 DSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAG 469
++ G + I++GS + LIE+QAL S S R +G +R ++++VL K+A
Sbjct: 287 ET---TGSTIIPIVEGSETLLIEVQALVSSSPFSNPVRKTSGFDPNRFSLLLAVLEKRAN 343
Query: 470 LKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVS 529
+KL + +FL++ G+ +T+ + DL ++ SS +P + GEIGLGGE+R VS
Sbjct: 344 VKLYTSDVFLSIAGGLKITQPSADLGAVLSVVSSLYNRYLPKNYTYTGEIGLGGEIRHVS 403
Query: 530 RMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVV 579
ME R+ +G++ ++P K L +Q++ IG K +K+ + ++
Sbjct: 404 HMEHRIKESIIMGFKGIVMPFGQIKGLPKEFLDQIDIIGVKTIKDAVRLL 453
>sp|P24554|RADA_ECOLI DNA repair protein RadA OS=Escherichia coli (strain K12) GN=radA
PE=3 SV=1
Length = 460
Score = 317 bits (812), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 185/485 (38%), Positives = 278/485 (57%), Gaps = 45/485 (9%)
Query: 109 GKANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRT---------- 158
KA + +VC++CG +W G C AC + T+ S P+V R
Sbjct: 2 AKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAAS---PMVARNERLSGYAGSA 58
Query: 159 --WLPQKPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDP 216
QK ++ L + G K+ D RVLGGG+VPGS +LIGG+P
Sbjct: 59 GVAKVQKLSDISLEELPRFSTGFKEFD--------------RVLGGGVVPGSAILIGGNP 104
Query: 217 GVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTD 276
G GKSTLLLQ + L + +YV+GEES++Q+ RA R+ + T+ L + S T
Sbjct: 105 GAGKSTLLLQT------LCKLAQQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETS 158
Query: 277 IEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLA 336
IE I + P+ ++IDSIQ +++ V S G + QV+E + L RFAK + +++
Sbjct: 159 IEQICLIAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMV 218
Query: 337 GHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQ 396
GHVTK G +AGP+VLEH +D + ++G+ S +R LRS KNRFG+ +ELGVF M++ GL+
Sbjct: 219 GHVTKDGSLAGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLR 278
Query: 397 AVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVS---RHVNGIQ 453
VSNPS IFLS E +G +V V+ +G+R L+EIQAL V S ++ R G++
Sbjct: 279 EVSNPSAIFLSR---GDEVTSGSSVMVVWEGTRPLLVEIQAL-VDHSMMANPRRVAVGLE 334
Query: 454 ASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGI 513
+R ++++VL + GL++ + +F+NVV GV +TET+ DLA+ A+ SS + P+P +
Sbjct: 335 QNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDL 394
Query: 514 AFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLK 573
GE+GL GE+R V ++R+S AK G+R+ IVP + A E M+ G K L
Sbjct: 395 VVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAANVPKKAP---EGMQIFGVKKLS 451
Query: 574 EVINV 578
+ ++V
Sbjct: 452 DALSV 456
>sp|P45266|RADA_HAEIN DNA repair protein RadA homolog OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=radA PE=3 SV=1
Length = 458
Score = 317 bits (811), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 184/481 (38%), Positives = 276/481 (57%), Gaps = 37/481 (7%)
Query: 109 GKANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRY-------SAGESDEGPVVQRTWLP 161
KA +T +VC+DCG +W G C AC++ T+ S + G +
Sbjct: 2 AKAPKTAYVCNDCGAEFSRWQGQCSACKAWNTITEVRLISTAKSKNDRFSGYAGETQAKI 61
Query: 162 QKPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKS 221
Q E+ + G +LD RVLGGG+VPGS +LIGG PG GKS
Sbjct: 62 QTLSEISLQETPRFSSGFSELD--------------RVLGGGIVPGSAILIGGHPGAGKS 107
Query: 222 TLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIV 281
TLLLQ+ L + +YV+GEES++Q+ RA R+ + +++L + S T +E I
Sbjct: 108 TLLLQVMC------GLAKNMTALYVTGEESLQQVAMRASRLGLPSDQLKMLSETSVEQIC 161
Query: 282 EKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTK 341
L P+ +++DSIQ ++L + S G + QV+EC S L R+AK + +++ GHVTK
Sbjct: 162 NLADQLKPQIIVVDSIQVMHLADIQSSPGSVAQVRECASFLTRYAKTRQVAIIMVGHVTK 221
Query: 342 SGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNP 401
G +AGP+VLEH +D L +EGE S YR LRS KNRFG+ +ELGVF M++ GL+ V NP
Sbjct: 222 DGTLAGPKVLEHAIDCSLLLEGEADSRYRTLRSHKNRFGAVNELGVFGMTEQGLREVKNP 281
Query: 402 SKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVS---RHVNGIQASRAD 458
S IFLS E +G +V V+ +G+R L+EIQAL V S ++ R G++ +R
Sbjct: 282 SAIFLSR---GDEITSGSSVMVLWEGTRPLLVEIQAL-VDHSMLANPRRVAVGLEQNRLA 337
Query: 459 MIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGE 518
++++VL + GL++ + +F+NVV GV ++ET+ DLA+ A+ SSF P+P + GE
Sbjct: 338 LLLAVLHRHGGLQMADQDVFVNVVGGVKVSETSADLALLLALISSFRNRPLPQDLVIFGE 397
Query: 519 IGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINV 578
+GL GE+R V ++R+S AK G+++ IVP + A E M+ K L + + V
Sbjct: 398 VGLAGEIRPVPSGQERISEAAKHGFKRAIVPFGNKPKSAV---ENMQVFTVKKLTDALAV 454
Query: 579 V 579
+
Sbjct: 455 L 455
>sp|P96963|RADA_PSEAE DNA repair protein RadA homolog OS=Pseudomonas aeruginosa (strain
ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=radA
PE=3 SV=2
Length = 453
Score = 313 bits (802), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 186/480 (38%), Positives = 271/480 (56%), Gaps = 39/480 (8%)
Query: 110 KANRTNWVCSDCGYTDGQWWGMCRACESVGTMKR--YSAGESDEGPVVQRTWLPQKPE-- 165
KA R + C++CG T +W G C C + T+ A S G + W Q+
Sbjct: 3 KAKRM-YGCTECGATFPKWAGQCADCGAWNTLVETVVEAAPSGSG---RGGWAGQQANLK 58
Query: 166 ---EVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKST 222
EV + G +LD RVLGGGLV GS+VLIGGDPG+GKST
Sbjct: 59 TLAEVSVEEMPRFTTGSTELD--------------RVLGGGLVDGSVVLIGGDPGIGKST 104
Query: 223 LLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVE 282
+LLQ + +L P +YV+GEES +Q+ RA R+ + ++L + + T IE I+
Sbjct: 105 ILLQT------LCNLASRVPALYVTGEESQQQVAMRARRLSLPEDKLKVMTETSIETIIA 158
Query: 283 KVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKS 342
+ PR ++IDSIQT++ + + GG+ QV+E + L+R+AK++ + L GHVTK
Sbjct: 159 TARQEQPRVMVIDSIQTIFTEQLQSAPGGVAQVRESAAMLVRYAKQSGTAIFLVGHVTKE 218
Query: 343 GDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPS 402
G +AGPRVLEH+VD VLY EGE RLLR+VKNRFG+ +ELGVF M+ GL+ VSNPS
Sbjct: 219 GALAGPRVLEHMVDTVLYFEGESDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPS 278
Query: 403 KIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVS--RHVNGIQASRADMI 460
IFL+ E + G V +GSR L+E+QAL + + R G+ +R M+
Sbjct: 279 AIFLTRAQ---EAVPGSVVMATWEGSRPMLVEVQALVDTSHLANPRRVTLGLDQNRLAML 335
Query: 461 ISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIG 520
++VL + G+ + +FLNVV GV + ETA DLA+ AA+ SS P+P+ + GE+G
Sbjct: 336 LAVLHRHGGIPTYDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVG 395
Query: 521 LGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
L GE+R V ++R+ K G+++ IVP A G ++ I L++ ++ +F
Sbjct: 396 LSGEVRPVPSGQERLKEAGKHGFKRAIVPLGNAPKEAPAG---LQVIAVTRLEQALDALF 452
>sp|P24517|RADA_SALTY DNA repair protein RadA OS=Salmonella typhimurium (strain LT2 /
SGSC1412 / ATCC 700720) GN=radA PE=3 SV=3
Length = 460
Score = 313 bits (801), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 184/485 (37%), Positives = 276/485 (56%), Gaps = 45/485 (9%)
Query: 109 GKANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWL-------- 160
KA + +VC++CG +W G C AC + T+ S P V R
Sbjct: 2 AKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAAS---PTVARNERLSGYAGSA 58
Query: 161 ----PQKPEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDP 216
QK ++ L + G K+ D RVLGGG+VPGS +LIGG+P
Sbjct: 59 GVSKVQKLSDISLEELPRFSTGFKEFD--------------RVLGGGVVPGSAILIGGNP 104
Query: 217 GVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTD 276
G GKSTLLLQ + L E +YV+GEES++Q+ RA R+ + T L + S T
Sbjct: 105 GAGKSTLLLQT------LCKLAEQMKTLYVTGEESLQQVAMRAHRLGLPTANLNMLSETS 158
Query: 277 IEDIVEKVQPLSPRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLA 336
IE I + P+ ++IDSIQ +++ + S G + QV+E + L RFAK + +++
Sbjct: 159 IEQICLIAEEEQPKLMVIDSIQVMHMADIQSSPGSVAQVRETAAYLTRFAKTRGVAIVMV 218
Query: 337 GHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQ 396
GHVTK G +AGP+VLEH +D + ++G+ S +R LRS KNRFG+ +ELGVF M++ GL+
Sbjct: 219 GHVTKDGSLAGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLR 278
Query: 397 AVSNPSKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVS---RHVNGIQ 453
VSNPS IFLS E +G +V V+ +G+R L+EIQAL V S ++ R G++
Sbjct: 279 EVSNPSAIFLSR---GDEVTSGSSVMVVWEGTRPLLVEIQAL-VDHSMMANPRRVAVGLE 334
Query: 454 ASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGI 513
+R ++++VL + GL++ + +F+NVV GV +TET+ DLA+ A+ SS + P+P +
Sbjct: 335 QNRLAILLAVLHRHGGLQMSDQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDL 394
Query: 514 AFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLK 573
GE+GL GE+R V ++R+S AK G+R+ IVP + ++ E M G K L
Sbjct: 395 VVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAA---NVPKKPPEGMLVFGVKKLA 451
Query: 574 EVINV 578
+ ++V
Sbjct: 452 DALSV 456
>sp|O66827|RADA_AQUAE DNA repair protein RadA homolog OS=Aquifex aeolicus (strain VF5)
GN=radA PE=3 SV=1
Length = 444
Score = 308 bits (788), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 173/471 (36%), Positives = 269/471 (57%), Gaps = 32/471 (6%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVR 171
N+T +VC +CGY +W G C +C T+ +S + + ++P V PV
Sbjct: 4 NKTAYVCQECGYKSVKWLGKCPSCGEWNTLVEEFEPQS-------FSLVKKEPSLVLPVT 56
Query: 172 LLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAII 231
E + ++ +G + LGGGLV G ++LI G+PG+GKSTLLLQ++ +
Sbjct: 57 DWEKEEHERET------TGF--ESLDNALGGGLVKGQVILIAGEPGIGKSTLLLQISDRV 108
Query: 232 ADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRA 291
A+ V+YVSGEES QI RA R+ I E L +Y ++E I++ ++ P
Sbjct: 109 AN------GKKVLYVSGEESGTQIALRAKRLGINNENLLVYPEVNLEKILQTLEKEKPSL 162
Query: 292 LIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVL 351
L++DS+QT++ + SAG + QV+E T + F K+ N+P + G +TK G IAGP+VL
Sbjct: 163 LVLDSVQTIFSERLESSAGSVSQVREVTYRITEFCKEKNVPAFIVGQITKEGSIAGPKVL 222
Query: 352 EHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHS 411
EHIVD VL EGE+F+ YR+++ +KNRFGST E+ VF+M+ GL+ V PS F+SE+ +
Sbjct: 223 EHIVDTVLQFEGERFNFYRIVKVIKNRFGSTGEIAVFKMTDKGLEEVPEPSAFFISEKAN 282
Query: 412 DSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMKQAG 469
G V +GS+ L+E+QAL + +T R G +R +I++VL K+A
Sbjct: 283 ----APGSVVFPHTEGSKPVLLEVQALVIPALYTTPQRRTQGFDPNRLALILAVLEKEAK 338
Query: 470 LKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVS 529
+ ++ +F+NV G+++ E A DLAVA A+ SS E +P GE+GL GE+R V
Sbjct: 339 IFTRDQDVFVNVAGGMSVKEPAADLAVAMAVVSSKKEKEVPKDFVIFGEVGLSGEIRAVH 398
Query: 530 RMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+ R+ + G++K ++PKS E + + ME +++E I V+F
Sbjct: 399 FGDLRLKEAKRFGFKKALIPKSLE-----IEIDGMEIYPVSHIQEAIEVLF 444
>sp|Q9PK96|RADA_CHLMU DNA repair protein RadA homolog OS=Chlamydia muridarum (strain MoPn
/ Nigg) GN=radA PE=3 SV=2
Length = 455
Score = 306 bits (783), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 175/473 (36%), Positives = 274/473 (57%), Gaps = 31/473 (6%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMK---RYSAGESDEGPVVQRTWLPQKPEEVQP 169
+T W CS+CG +W G C C T+ S ++ P+ T +P + Q
Sbjct: 7 KTQWACSECGSYSPKWLGQCPGCFQWNTLVEEIHSSKLKTSSYPLSSTTPVPLNTVKFQE 66
Query: 170 -VRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMA 228
+R+ +KG W R+LGGG V GSL L+GG+PG+GKSTLLLQ++
Sbjct: 67 EIRISTRSKG-----WN------------RLLGGGTVCGSLTLLGGEPGIGKSTLLLQIS 109
Query: 229 AIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLS 288
+ A+ + V+YV GEESV Q RA R+ I++ +FL+ T++EDI +++ L+
Sbjct: 110 SQFAE-----QGYKVLYVCGEESVSQTSLRAQRLQISSSNIFLFPETNLEDIKQQISDLA 164
Query: 289 PRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGP 348
P LIIDSIQ ++ ++ + G + QV+E T+ L+ AK+ I + GHVTKSG+IAGP
Sbjct: 165 PDILIIDSIQIIFSPSLSSAPGSVAQVRETTAELMHIAKQKQITTFIIGHVTKSGEIAGP 224
Query: 349 RVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSE 408
R+LEH+VD VLY EG ++YR++RSVKNRFG T+EL + M GL V NPS FL E
Sbjct: 225 RILEHLVDTVLYFEGNAHTNYRMIRSVKNRFGPTNELLILSMQTDGLHEVENPSGFFLQE 284
Query: 409 QHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSG--STVSRHVNGIQASRADMIISVLMK 466
+ ++ G + I++GS + L+E+QAL S S R +G +R ++++VL K
Sbjct: 285 KVVET---TGSTIIPIVEGSETLLVEVQALVSSSPFSNPVRKTSGFDPNRFSLLLAVLEK 341
Query: 467 QAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELR 526
+A +KL + +FL++ G+ +T+ + DL ++ SS +P + GEIGLGGE+R
Sbjct: 342 RANVKLYTSDVFLSIAGGLKITQPSADLGAVLSVVSSLYNRYLPKNYTYTGEIGLGGEIR 401
Query: 527 MVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVV 579
V+ +E R+ +G++ ++P K L +Q++ IG K +K+ + ++
Sbjct: 402 HVTHIEHRIKESIIMGFKGIVMPSGQIKGLPKEYLDQIDIIGVKTIKDAVRLL 454
>sp|Q9PN90|RADA_CAMJE DNA repair protein RadA homolog OS=Campylobacter jejuni subsp.
jejuni serotype O:2 (strain NCTC 11168) GN=radA PE=3
SV=1
Length = 446
Score = 298 bits (763), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 171/439 (38%), Positives = 252/439 (57%), Gaps = 21/439 (4%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQR-TWLPQKPEEVQPV 170
N+ + C CG +W G C C G + ++++ V++ + K E +
Sbjct: 4 NKALFECQACGNQQSKWLGKCPDC---GAWDSFVELKAEQIKVLKELAQVSMKTSEAVCI 60
Query: 171 RLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAI 230
+E+ + NE+ VLGGGLV GSLVLIGG PGVGKSTLLL++A+
Sbjct: 61 EDVELEHFTRY--------STDDNELDLVLGGGLVEGSLVLIGGSPGVGKSTLLLKIASN 112
Query: 231 IADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPR 290
+A + V+YVSGEES QI RADR+ T LFL + +E+I+E++
Sbjct: 113 LAK-----QGKKVLYVSGEESKAQIKLRADRLEANTPNLFLLTELCLENILEELHKKDYS 167
Query: 291 ALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRV 350
LI+DSIQT+Y + +AG + QV+E T L+R +K NI + GH+TK G IAGPRV
Sbjct: 168 ILIVDSIQTLYSNKITSAAGSITQVREITFELMRVSKAYNISTFIIGHITKEGAIAGPRV 227
Query: 351 LEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQH 410
LEH+VD VLY EG+ RLLR KNRFG T+E+G+FEM+ GL + + + F +
Sbjct: 228 LEHMVDVVLYFEGDATKEIRLLRGFKNRFGGTNEVGIFEMTAKGLISAKDLANRFFTRGK 287
Query: 411 SDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVSRHVNGIQASRADMIISVLMKQAGL 470
+ ++G A+ V+M+GSR+ ++E+QAL S R G + +R DM++++L ++ +
Sbjct: 288 A----ISGSALGVVMEGSRALVLEVQALVCESSYPKRSATGYEKNRLDMLLALLERKLEI 343
Query: 471 KLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSR 530
L +F+N+ GV ++ETA DLAV AAI SSF P+ FIGE+ L GE+R V
Sbjct: 344 PLGHYDVFVNISGGVKVSETAADLAVVAAIISSFKNRPLSKDSIFIGELSLNGEIREVFS 403
Query: 531 MEKRVSTVAKLGYRKCIVP 549
++ R+ ++ IVP
Sbjct: 404 LDTRLKEAKMQKFKNAIVP 422
>sp|Q4UL56|RADA_RICFE DNA repair protein RadA homolog OS=Rickettsia felis (strain ATCC
VR-1525 / URRWXCal2) GN=radA PE=3 SV=1
Length = 446
Score = 294 bits (752), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 173/470 (36%), Positives = 273/470 (58%), Gaps = 33/470 (7%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVR 171
++ +++CS+CG T +W G C C G++ + + +T Q +++
Sbjct: 4 DKKHYICSNCGNTSPKWSGQCFDCGVWGSIVEEIVSTN---KAIVKTGSKQDFDKLS--- 57
Query: 172 LLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAII 231
G RIP G E+ RVLGGGLV GS +LIGGDPG+GKSTLLLQ+AA
Sbjct: 58 ------GHVAEQLRIPTP--IG-ELNRVLGGGLVLGSAILIGGDPGIGKSTLLLQLAA-- 106
Query: 232 ADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRA 291
+ +Y++GEES++QI RA R+ + + ++T++EDI+ ++
Sbjct: 107 ---SNFASKMNCLYITGEESLDQIKLRAIRLNLTNYNTDILAATNLEDIIASIEANKNNI 163
Query: 292 --LIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPR 349
++IDSIQT+ + ++ G + Q++ C + L+ +AK+ NI +LL+ HVTK G +AGP+
Sbjct: 164 DLVVIDSIQTITTKELSSPPGTVSQIRICANELVNYAKQNNIIILLSCHVTKDGQLAGPK 223
Query: 350 VLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQ 409
+LEH+VD VLY EG+ + +R+LRS KNRFG E+GVFEM GL V+NPS++FL ++
Sbjct: 224 ILEHLVDTVLYFEGDHNNHFRILRSYKNRFGGVGEIGVFEMCGSGLIEVTNPSELFLMKR 283
Query: 410 HSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVS--RHVNGIQASRADMIISVLMKQ 467
+ + G ++ ++GSR L+E+QAL V + V+ R G A+R MI++VL +
Sbjct: 284 EQN---VIGTSIFAGIEGSRPLLMEVQALIVPSNMVTPRRSAVGWDANRLSMILAVLSSR 340
Query: 468 AGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRM 527
GL L ++L++ G+ + + A DLAVAA++ S+ P+P F GEI L GE+R
Sbjct: 341 IGLNLANYEVYLSIAGGLKIADPASDLAVAASLISAATGKPVPEHSVFFGEISLSGEIRK 400
Query: 528 VSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIG-CKNLKEVI 576
++ E R+ KLG+ K I K L L ++ + + K+LKE+I
Sbjct: 401 TAKAETRIKEAVKLGFNKIICSK-----LENLTYDFISSVSHLKDLKEII 445
>sp|Q68WI9|RADA_RICTY DNA repair protein RadA homolog OS=Rickettsia typhi (strain ATCC
VR-144 / Wilmington) GN=radA PE=3 SV=1
Length = 445
Score = 291 bits (745), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 174/481 (36%), Positives = 275/481 (57%), Gaps = 56/481 (11%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRAC--------ESVGTMKRYSAGESDEGPVVQRTWLPQK 163
++ +++CS+C +W G C C E + T K G ++T+
Sbjct: 4 DKKHYICSNCANISHKWSGQCFDCGVWGSIVEEIISTNKSIITGS-------KQTFDKLS 56
Query: 164 PEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTL 223
+ +P+R+ P+S E+ RVLGGGLV GS +LIGG+PG+GKSTL
Sbjct: 57 CDVSEPLRI------------STPIS-----ELNRVLGGGLVLGSAILIGGEPGIGKSTL 99
Query: 224 LLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEK 283
LLQ+ A + +Y++GEES++QI RA R+ I + ++T++EDI+
Sbjct: 100 LLQLTA-----SNFESKMRCLYITGEESLDQIKLRAIRLNITNYNTAILAATNLEDIIAS 154
Query: 284 VQPLSPRA--LIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTK 341
+ + ++IDSIQT+ + ++ G + Q++ C + L+ ++K+ NI +LL+ HVTK
Sbjct: 155 IDDNNNNIDLVVIDSIQTITTKELSSPPGTVSQIRTCANELVNYSKQNNIIILLSCHVTK 214
Query: 342 SGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNP 401
G IAGP++LEH+VD VLY EG+ + +R+LRS KNRFGS E+GVFEMS G+ V+N
Sbjct: 215 DGQIAGPKILEHLVDTVLYFEGDHNNHFRILRSYKNRFGSIGEIGVFEMSSSGILEVTNH 274
Query: 402 SKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVS--RHVNGIQASRADM 459
S++FL ++ + + G ++ ++GSR L+E+QAL V + ++ R G A+R M
Sbjct: 275 SELFLMKREHN---VVGTSIFAGVEGSRPLLMEVQALIVPSNMLTPKRSAVGWDANRLSM 331
Query: 460 IISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEI 519
I++VL + GL L I+L++ G+ +T+ A DLAVAA++ S+ P+P F GEI
Sbjct: 332 ILAVLSSRIGLNLANYEIYLSIAGGLKITDPASDLAVAASLISAATSIPLPEHSVFFGEI 391
Query: 520 GLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFI-GC---KNLKEV 575
L GE+R ++ E R+ KLG+ K I K L L + +FI C ++LKE+
Sbjct: 392 SLSGEIRKTAKAETRIKEAVKLGFNKVICSK-----LENLTY---DFICSCTHLQDLKEI 443
Query: 576 I 576
I
Sbjct: 444 I 444
>sp|Q1RJR7|RADA_RICBR DNA repair protein RadA homolog OS=Rickettsia bellii (strain
RML369-C) GN=radA PE=3 SV=1
Length = 448
Score = 290 bits (741), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 167/443 (37%), Positives = 256/443 (57%), Gaps = 27/443 (6%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+ +++CS+CG T +W G C C G++ E V+ + + + Q
Sbjct: 5 KKHYICSNCGNTSPKWSGQCFDCGVWGSII--------EEKVISNKNIAKIGSK-QDFEQ 55
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
L N Q+ P+ E+ RVLGGGLV GS +LIGGDPG+GKSTLLLQ+ A
Sbjct: 56 LSSNV-TDQVRISTPIG-----ELDRVLGGGLVLGSAILIGGDPGIGKSTLLLQLVA--- 106
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRA- 291
+Y++GEES++QI RA R+ + ++ + ++ ++EDI+ ++
Sbjct: 107 --GSFASKVKCLYITGEESLDQIKLRALRLDLVNDKTNILAANNLEDIIASLEANKGNID 164
Query: 292 -LIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRV 350
++IDSIQT+ R + G + Q++ C L+ +AK+ NI +LL+ HVTK G +AGP++
Sbjct: 165 LVVIDSIQTIATRELTSPPGTVSQIRTCAHELVNYAKQNNIIILLSCHVTKDGQLAGPKL 224
Query: 351 LEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQH 410
LEH+VD VLY EG+ + +R+LRS KNRFG E+GVFEMS GL V+NPS++FL ++
Sbjct: 225 LEHLVDTVLYFEGDHNNHFRILRSYKNRFGGVGEIGVFEMSSSGLIEVTNPSELFLMKRE 284
Query: 411 SDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVS--RHVNGIQASRADMIISVLMKQA 468
+ + G A+ ++GSR L+E+QAL V + V+ R G +R MI++VL +
Sbjct: 285 QN---VIGTAIFAGIEGSRPLLMEVQALIVPSNMVTPRRSAVGWDVNRLSMILAVLSSRI 341
Query: 469 GLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMV 528
GL L ++L++ G+ + E A DLAVAA++ S+ P+P F GEI L GE+R
Sbjct: 342 GLNLANYEVYLSIAGGLKINEPASDLAVAASLISAATNKPLPEHSVFFGEISLSGEIRKT 401
Query: 529 SRMEKRVSTVAKLGYRKCIVPKS 551
++ E R+ KLG+ I KS
Sbjct: 402 AKAEARIKEALKLGFNNIICSKS 424
>sp|Q92HG1|RADA_RICCN DNA repair protein RadA homolog OS=Rickettsia conorii (strain ATCC
VR-613 / Malish 7) GN=radA PE=3 SV=1
Length = 444
Score = 289 bits (740), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 173/474 (36%), Positives = 270/474 (56%), Gaps = 43/474 (9%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+ +++CS+CG +W G C C G++ + V+ + Q +++
Sbjct: 3 KKHYICSNCGNISPKWSGQCFDCGVWGSIVEEIISTNQ---VIVKVGSKQDFDKLS---- 55
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
G RIP G E RVLGGGLV GS +LIGGDPG+GKSTLLLQ+AA
Sbjct: 56 -----GHVTEQLRIPTP--IG-EFNRVLGGGLVLGSAILIGGDPGIGKSTLLLQLAA--- 104
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRA- 291
+ +Y++GEES++QI RA R+ + + ++T++E+I+ ++
Sbjct: 105 --SNFASKMNCLYITGEESLDQIKLRAIRLNLTNYNTDILAATNLENIIASIEANKNNID 162
Query: 292 -LIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRV 350
++IDSIQT+ + ++ G + Q++ C + L+ +AK+ NI +LL+ HVTK G +AGP++
Sbjct: 163 LIVIDSIQTITTKELSSPPGTVSQIRTCANELVNYAKQNNIIILLSCHVTKDGQLAGPKI 222
Query: 351 LEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQH 410
LEH+VD VLY EG+ + +R+LRS KNRFG E+GVFEMS GL V+NPS++FL ++
Sbjct: 223 LEHLVDTVLYFEGDHNNHFRILRSYKNRFGGVGEIGVFEMSGSGLIEVTNPSELFLMQRE 282
Query: 411 SDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVS--RHVNGIQASRADMIISVLMKQA 468
+ + G ++ ++GSR L+E+QAL V + V+ R G A+R MI++VL +
Sbjct: 283 QN---VIGTSIFAGIEGSRPLLMEVQALMVPSNMVTPRRSAVGWDANRLSMILAVLSSRI 339
Query: 469 GLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMV 528
GL L ++L++ G+ + + A DLAV A++ S+ P+P F GEI L GE+R
Sbjct: 340 GLNLANYEVYLSIAGGLKIADPASDLAVTASLISAATGNPVPEHSVFFGEISLSGEIRKT 399
Query: 529 SRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQM--EFIGC----KNLKEVI 576
++ E R+ KLG+ K I K FE + +FI K+LKE+I
Sbjct: 400 AKAETRIKEAVKLGFNKIICSK----------FENLTYDFISSVSHLKDLKEII 443
>sp|P65953|RADA_MYCTU DNA repair protein RadA homolog OS=Mycobacterium tuberculosis
GN=radA PE=3 SV=1
Length = 480
Score = 288 bits (737), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 170/436 (38%), Positives = 262/436 (60%), Gaps = 25/436 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
R+ + CS+C + +W G C C GT+ + S G +R+ P P+
Sbjct: 5 RSQYRCSECRHVSAKWVGRCLECGRWGTVDEVAV-LSAVGGTRRRSVAPAS--GAVPISA 61
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
++ ++ R +G+ +E+ RVLGGG+VPGS+ L+ GDPGVGKSTLLL++A
Sbjct: 62 VDAHR------TRPCPTGI--DELDRVLGGGIVPGSVTLLAGDPGVGKSTLLLEVA---- 109
Query: 233 DVHDLGEPSP-VVYVSGEESVEQIGNRADRMMIATE--ELFLYSSTDIEDIVEKVQPLSP 289
H + +YVSGEES QI RADR+ TE E++L + +D+ ++++++ + P
Sbjct: 110 --HRWAQSGRRALYVSGEESAGQIRLRADRIGCGTEVEEIYLAAQSDVHTVLDQIETVQP 167
Query: 290 RALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPR 349
+I+DS+QT+ G GG+ QV+ T+AL AK + ++L GHVTK G IAGPR
Sbjct: 168 ALVIVDSVQTMSTSEADGVTGGVTQVRAVTAALTAAAKANEVALILVGHVTKDGAIAGPR 227
Query: 350 VLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQ 409
LEH+VD VL+ EG++ + R++R VKNRFG+ DE+G F + G+ + +PS +FL ++
Sbjct: 228 SLEHLVDVVLHFEGDRNGALRMVRGVKNRFGAADEVGCFLLHDNGIDGIVDPSNLFLDQR 287
Query: 410 HSDSEFLAGLAVAVIMDGSRSFLIEIQALCVS--GSTVSRHVNGIQASRADMIISVLMKQ 467
+ +AG A+ V +DG R + E+QAL + G + R V+GI +RA MI +VL K
Sbjct: 288 PTP---VAGTAITVTLDGKRPLVGEVQALLATPCGGSPRRAVSGIHQARAAMIAAVLEKH 344
Query: 468 AGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRM 527
A L + N I+L+ V G+ LTE + DLAVA A+ S++ P+P IGE+GL G++R
Sbjct: 345 ARLAIAVNDIYLSTVGGMRLTEPSADLAVAIALASAYANLPLPTTAVMIGEVGLAGDIRR 404
Query: 528 VSRMEKRVSTVAKLGY 543
V+ M +R+S A+ G+
Sbjct: 405 VNGMARRLSEAARQGF 420
>sp|P65954|RADA_MYCBO DNA repair protein RadA homolog OS=Mycobacterium bovis (strain ATCC
BAA-935 / AF2122/97) GN=radA PE=3 SV=1
Length = 480
Score = 288 bits (737), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 170/436 (38%), Positives = 262/436 (60%), Gaps = 25/436 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
R+ + CS+C + +W G C C GT+ + S G +R+ P P+
Sbjct: 5 RSQYRCSECRHVSAKWVGRCLECGRWGTVDEVAV-LSAVGGTRRRSVAPAS--GAVPISA 61
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
++ ++ R +G+ +E+ RVLGGG+VPGS+ L+ GDPGVGKSTLLL++A
Sbjct: 62 VDAHR------TRPCPTGI--DELDRVLGGGIVPGSVTLLAGDPGVGKSTLLLEVA---- 109
Query: 233 DVHDLGEPSP-VVYVSGEESVEQIGNRADRMMIATE--ELFLYSSTDIEDIVEKVQPLSP 289
H + +YVSGEES QI RADR+ TE E++L + +D+ ++++++ + P
Sbjct: 110 --HRWAQSGRRALYVSGEESAGQIRLRADRIGCGTEVEEIYLAAQSDVHTVLDQIETVQP 167
Query: 290 RALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPR 349
+I+DS+QT+ G GG+ QV+ T+AL AK + ++L GHVTK G IAGPR
Sbjct: 168 ALVIVDSVQTMSTSEADGVTGGVTQVRAVTAALTAAAKANEVALILVGHVTKDGAIAGPR 227
Query: 350 VLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQ 409
LEH+VD VL+ EG++ + R++R VKNRFG+ DE+G F + G+ + +PS +FL ++
Sbjct: 228 SLEHLVDVVLHFEGDRNGALRMVRGVKNRFGAADEVGCFLLHDNGIDGIVDPSNLFLDQR 287
Query: 410 HSDSEFLAGLAVAVIMDGSRSFLIEIQALCVS--GSTVSRHVNGIQASRADMIISVLMKQ 467
+ +AG A+ V +DG R + E+QAL + G + R V+GI +RA MI +VL K
Sbjct: 288 PTP---VAGTAITVTLDGKRPLVGEVQALLATPCGGSPRRAVSGIHQARAAMIAAVLEKH 344
Query: 468 AGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRM 527
A L + N I+L+ V G+ LTE + DLAVA A+ S++ P+P IGE+GL G++R
Sbjct: 345 ARLAIAVNDIYLSTVGGMRLTEPSADLAVAIALASAYANLPLPTTAVMIGEVGLAGDIRR 404
Query: 528 VSRMEKRVSTVAKLGY 543
V+ M +R+S A+ G+
Sbjct: 405 VNGMARRLSEAARQGF 420
>sp|Q9ZD04|RADA_RICPR DNA repair protein RadA homolog OS=Rickettsia prowazekii (strain
Madrid E) GN=radA PE=3 SV=2
Length = 445
Score = 284 bits (726), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 172/481 (35%), Positives = 267/481 (55%), Gaps = 53/481 (11%)
Query: 112 NRTNWVCSDCGYTDGQWWGMCRAC--------ESVGTMKRYSAGESDEGPVVQRTWLPQK 163
++ ++CS+C +W G C C E + T K G
Sbjct: 4 DKKYYICSNCANISNKWSGQCFDCGVWGSIVEEIINTNKSIIKGSK-------------- 49
Query: 164 PEEVQPVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTL 223
Q L N +QL P+ E+ RVLGGGLV GS +LIGG+PG+GKSTL
Sbjct: 50 ----QTFDKLSCNVS-EQLRIPTPIC-----ELNRVLGGGLVLGSAILIGGEPGIGKSTL 99
Query: 224 LLQMAAIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEK 283
LLQ+ A + +Y++GEES++QI RA R+ I + ++T++EDI+
Sbjct: 100 LLQLTA-----SNFESEMRCLYITGEESLDQIKLRAIRLNITNYNTAILAATNLEDIIAS 154
Query: 284 VQPLSPRA--LIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTK 341
+ + ++IDSIQT+ + ++ G + Q++ C + L+ ++K+ NI +LL+ HVTK
Sbjct: 155 IDDNNNNIDLVVIDSIQTITTKELSSPPGTVSQIRTCANELVNYSKQNNIIILLSCHVTK 214
Query: 342 SGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNP 401
G IAGP++LEH+VD VLY EG+ + +R+LRS KNRFG E+GVFEMS G+ V+N
Sbjct: 215 DGQIAGPKILEHLVDTVLYFEGDHNNHFRILRSYKNRFGGVGEIGVFEMSNSGIIEVTNH 274
Query: 402 SKIFLSEQHSDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVS--RHVNGIQASRADM 459
S++FL ++ + + G ++ ++GSR L+E+QAL V + V+ R G A+R M
Sbjct: 275 SELFLIKREHN---VVGTSIFAGIEGSRPLLMEVQALIVPSNMVTPRRSAVGWDANRLSM 331
Query: 460 IISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEI 519
I++VL + GL L I+L++ G+ + + A DLAVAA++ S+ P+P F GEI
Sbjct: 332 ILAVLSSRIGLNLANYEIYLSIAGGLKIADPASDLAVAASLISAATSIPLPEHSVFFGEI 391
Query: 520 GLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFI-GCKNLKEVINV 578
L GE+R ++ E R+ KLG+ K I K L L + +FI C +L+E+ +
Sbjct: 392 SLSGEIRKTAKAETRIKEAVKLGFNKVICSK-----LENLTY---DFIFPCAHLQELKEI 443
Query: 579 V 579
+
Sbjct: 444 I 444
>sp|Q9Z9C8|RADA_CHLPN DNA repair protein RadA homolog OS=Chlamydia pneumoniae GN=radA
PE=3 SV=1
Length = 453
Score = 283 bits (725), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 177/472 (37%), Positives = 264/472 (55%), Gaps = 28/472 (5%)
Query: 113 RTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRL 172
+T W C+ CG T +W G C C + ++ E V Q + L
Sbjct: 6 KTQWTCNQCGATAPKWLGQCPGCHNWNSLV--------EEYVPQARSGTSSRSSTSAIAL 57
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVA--RVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAI 230
+ +L+ S +F + R+LGGG+V GSL L+GGDPG+GKSTLLLQ A
Sbjct: 58 SSI-----ELENE---SRIFIDHAGWDRILGGGVVRGSLTLLGGDPGIGKSTLLLQTAER 109
Query: 231 IADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPR 290
+A + V+YV GEESV Q RA R+ I++ ++L+ T++++I +++ L P
Sbjct: 110 LAS-----QKYKVLYVCGEESVTQTSLRAKRLNISSPLIYLFPETNLDNIKQQIATLEPD 164
Query: 291 ALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRV 350
LIIDSIQ ++ + + G + QV+E T L++ AK I + GHVTKSG+IAGPRV
Sbjct: 165 ILIIDSIQIIFNPTLNSAPGSVAQVREVTYELMQIAKSAQITTFIIGHVTKSGEIAGPRV 224
Query: 351 LEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQH 410
LEH+VD VLY EG ++YR++RSVKNRFG T+EL + M GL+ VSNPS +FL E+
Sbjct: 225 LEHLVDTVLYFEGNSHANYRMIRSVKNRFGPTNELLILSMHADGLKEVSNPSGLFLQEKT 284
Query: 411 SDSEFLAGLAVAVIMDGSRSFLIEIQALCVSGSTVS--RHVNGIQASRADMIISVLMKQA 468
+ G + I++GS + LIE+QAL S + R G +R ++++VL K+A
Sbjct: 285 GPT---TGSMIIPIIEGSGALLIELQALVSSSPFANPVRKTAGFDPNRFSLLLAVLEKRA 341
Query: 469 GLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMV 528
+KL +FL++ G+ + E A DL A+ SS +PN IGE+GLGGE+R V
Sbjct: 342 QVKLFTMDVFLSITGGLKIIEPAADLGALLAVASSLYNRLLPNNSIVIGEVGLGGEIRHV 401
Query: 529 SRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+ +E+R+ +G+ I+P+ SL E G K +K+ I ++
Sbjct: 402 AHLERRIKEGKLMGFEGAILPEGQISSLPKEIRENFRLQGVKTIKDAIRLLL 453
>sp|Q9ZMK9|RADA_HELPJ DNA repair protein RadA homolog OS=Helicobacter pylori (strain J99)
GN=radA PE=3 SV=1
Length = 448
Score = 281 bits (720), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 165/453 (36%), Positives = 255/453 (56%), Gaps = 33/453 (7%)
Query: 118 CSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPE-----EVQPVRL 172
C CG+T +W G C C + + + + + +++ LPQ + E++ +
Sbjct: 10 CQHCGFTSPKWLGKCVQCNAWESFIELNQTQKEVLNALKKP-LPQVQKSVSIAEIEHEEV 68
Query: 173 LEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIA 232
++ + +LD VLGGG+ G L L+GG PGVGKSTLLL++A+ +A
Sbjct: 69 IKFSSTQSELDI--------------VLGGGIAKGGLYLVGGSPGVGKSTLLLKVASGLA 114
Query: 233 DVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRAL 292
V+YVSGEES+ QI RA R+ EEL+L + + I ++ + A
Sbjct: 115 KNQQ-----KVLYVSGEESLSQIKMRATRLDCIEEELYLLNEINWPVIKANMESENYFAC 169
Query: 293 IIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLE 352
+IDSIQT+Y ++ + G + QV+E T L+R AK +I + + GH+TK G IAGPRVLE
Sbjct: 170 VIDSIQTLYSPEISSAPGSISQVREITFELMRLAKTRDIAIFIIGHITKEGSIAGPRVLE 229
Query: 353 HIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSD 412
H+VD+VLY EG+ R+LRS KNRFG T E+G+FEM + GL + S +F S++
Sbjct: 230 HMVDSVLYFEGDPSRELRILRSFKNRFGPTSEIGLFEMKEQGLVSAKEASSLFFSKE--- 286
Query: 413 SEFLAGLAVAVIMDGSRSFLIEIQAL---CVSGSTVSRHVNGIQASRADMIISVLMKQAG 469
E + G A+ + ++GSR+ ++EIQAL C G+ R NG +R +M+I++L K+
Sbjct: 287 -EPMEGSAITITLEGSRALILEIQALVSECSFGAP-KRLANGFDTNRLNMLIALLEKKLE 344
Query: 470 LKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVS 529
+ L + +F+NV G+ ++E A DLAV A+I SSF I N AF+GE+ L G +
Sbjct: 345 IPLNRHDVFINVSGGIKISEPACDLAVIASILSSFKNRKIDNKTAFLGEVSLNGRILEAP 404
Query: 530 RMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFE 562
+ R+ + G+ K I+PK + + +E
Sbjct: 405 NLNARLKEMENYGFLKAILPKKPSQKTSIKCYE 437
>sp|P56148|RADA_HELPY DNA repair protein RadA homolog OS=Helicobacter pylori (strain ATCC
700392 / 26695) GN=radA PE=3 SV=2
Length = 448
Score = 281 bits (718), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 165/448 (36%), Positives = 256/448 (57%), Gaps = 23/448 (5%)
Query: 118 CSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQPVRLLEVNK 177
C CG+T +W G C C + + + + + +++ +PQ + V + +E +
Sbjct: 10 CQHCGFTSPKWLGKCVQCNAWESFIELNQAQKEVLNTLKKP-IPQAQKSVS-IAAIEHEE 67
Query: 178 GMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDL 237
+K + +E+ VLGGG+ G L L+GG PGVGKSTLLL++A+ +A
Sbjct: 68 VIKFSSTQ--------SELDIVLGGGIAKGGLYLVGGSPGVGKSTLLLKVASGLAKNQQ- 118
Query: 238 GEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRALIIDSI 297
V+YVSGEES+ QI RA R+ +EL+L + + I ++ + A +IDSI
Sbjct: 119 ----KVLYVSGEESLSQIKMRAIRLDCIEKELYLLNEINWPVIKANIESENYFACVIDSI 174
Query: 298 QTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRVLEHIVDA 357
QT+Y ++ + G + QV+E T L+R AK +I + + GH+TK G IAGPRVLEH+VD+
Sbjct: 175 QTLYSPEISSAPGSISQVREITFELMRLAKTRDIAIFIIGHITKEGSIAGPRVLEHMVDS 234
Query: 358 VLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSEQHSDSEFLA 417
VLY EG+ R+LRS KNRFG T E+G+FEM + GL + S +F S++ E +
Sbjct: 235 VLYFEGDPSRELRILRSFKNRFGPTSEIGLFEMKEQGLVSAKEASSLFFSKE----EPME 290
Query: 418 GLAVAVIMDGSRSFLIEIQAL---CVSGSTVSRHVNGIQASRADMIISVLMKQAGLKLQE 474
G A+ + ++GSR+ ++EIQAL C GS R NG +R +M+I++L K+ + L
Sbjct: 291 GSAITITLEGSRALILEIQALVSECSFGSP-KRLANGFDTNRLNMLIALLEKKLEIPLNR 349
Query: 475 NAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKR 534
+ +F+NV G+ ++E A DLAV A+I SSF I N AF+GE+ L G + + R
Sbjct: 350 HDVFINVSGGIKISEPACDLAVIASILSSFKNRKIDNKTAFLGEVSLNGRILEAPNLNAR 409
Query: 535 VSTVAKLGYRKCIVPKSAEKSLATLGFE 562
+ + G+ K I+PK + + +E
Sbjct: 410 LKEMENYGFLKAILPKKPSQKTSIKCYE 437
>sp|O83985|RADA_TREPA DNA repair protein RadA homolog OS=Treponema pallidum (strain
Nichols) GN=radA PE=3 SV=1
Length = 455
Score = 260 bits (664), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 164/447 (36%), Positives = 242/447 (54%), Gaps = 23/447 (5%)
Query: 109 GKANRTNWVCSDCGYTDGQWWGMCRACESVGTMKRYSAGESDEGPVVQRTWLPQKPEEVQ 168
K + C CGY +W G C C + + + S + V++
Sbjct: 2 AKKTERAFSCVGCGYVHPKWLGRCPECGEWNSFEETPSLSSGDVRAVKKA-------SSS 54
Query: 169 PVRLLEVNKGMKQLDWRIPLSGLFGNEVARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMA 228
PV+ + Q RI G+ E RVLGGG V S ++IGG+PG+GKSTLLLQ+A
Sbjct: 55 PVQAFPLCAVRAQDAQRISC-GI--AEFDRVLGGGAVRRSAIMIGGEPGIGKSTLLLQIA 111
Query: 229 AIIADVHDLGEPSPVVYVSGEESVEQIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLS 288
A V+YVSGEES QI RADR+ I + + L +T +ED+ +
Sbjct: 112 AACG--------KSVLYVSGEESPGQIRGRADRLNIPIQNIELLCATRVEDVERVLNTRC 163
Query: 289 PRALIIDSIQTVYLRGVAGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGP 348
P +I+DSIQTV+ + Q+K C + L+ + K+ + + HVTK G+IAGP
Sbjct: 164 PTFVIVDSIQTVFSPEAGAIPMTINQLKYCANELIAWVKERDSVLFFTAHVTKDGNIAGP 223
Query: 349 RVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVSNPSKIFLSE 408
+V+EH+VD V+ E + R LR++KNRFGS DELG+F M + GL AV + + F+S
Sbjct: 224 KVVEHMVDTVISFERNE-EDIRFLRALKNRFGSVDELGIFTMGENGLSAVQDTAGFFIST 282
Query: 409 QHSDSEFLAGLAVAVIMDGSRSFLIEIQALCV-SGSTVSR-HVNGIQASRADMIISVLMK 466
+ F G A + +GSR F++EIQAL V + S+V+R + I ++R + +V+ K
Sbjct: 283 RQ--GMFPVGSATVPVCEGSRVFMVEIQALTVPAKSSVTRVFSDRIDSARVSRVAAVIEK 340
Query: 467 QAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELR 526
+ GLK + I++NV G+ L E A D+A+A A+ S+ P+ AFIGE+ L GE+R
Sbjct: 341 RVGLKFSDQDIYVNVAGGIRLYEPAVDVALAMALYSARQNTPVKTNAAFIGEVSLSGEIR 400
Query: 527 MVSRMEKRVSTVAKLGYRKCIVPKSAE 553
V R++ R+ T LG+ VP E
Sbjct: 401 PVRRLKTRLKTAYGLGFSTIYVPIGVE 427
>sp|P42425|LON2_BACSU Lon protease 2 OS=Bacillus subtilis (strain 168) GN=lon2 PE=2 SV=2
Length = 552
Score = 55.8 bits (133), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 62/120 (51%), Gaps = 1/120 (0%)
Query: 464 LMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGG 523
+++ G+K + I +N G+ + + +A+AA I S+ + PI N +A GEI L G
Sbjct: 418 VLRTMGMKPSDYDIHINFPGGIPIDGPSAGIAMAAGIFSAIHKIPIDNTVAMTGEISLNG 477
Query: 524 ELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVFTTP 583
++ + + ++ + G +K I+P ++++ + +E I K +EV++ + P
Sbjct: 478 LVKPIGGVIPKIKAAKQSGAKKVIIPYENQQAILK-QIDGIEIIAVKTFQEVLDEILVNP 536
>sp|A3CXI2|RADB_METMJ DNA repair and recombination protein RadB OS=Methanoculleus
marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=radB
PE=3 SV=1
Length = 224
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 89/200 (44%), Gaps = 29/200 (14%)
Query: 199 VLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGE----ESVEQ 254
+LGGGL ++ I G+P GKSTL L MAA+ L + VVY+ E E Q
Sbjct: 16 LLGGGLERRAITQIYGEPASGKSTLCL-MAAVAT----LRAGNSVVYIDTEGFSVERFTQ 70
Query: 255 I-----GNRADRMMIATEELFLYSSTDIED----IVEKVQPLSPRALIIDSIQTVYLRGV 305
I G ADR+ + F T I D + P+ L++DS +Y +
Sbjct: 71 IAGENAGTLADRLYLFEPLDFAQQGTMIADAEGLLKNGHAPVG--LLVMDSATALYRTEL 128
Query: 306 AGSAGGLMQVKECTSALLRFAKKTNIPVLLAGHVTKSGDIAGPRV-------LEHIVDAV 358
+ ++ LL AKK +IPVL+ + D+ RV LEH+ A+
Sbjct: 129 DLGREAIRKLSHHMIKLLGLAKKYDIPVLITNQIYM--DVERDRVAGLGGTALEHLSKAI 186
Query: 359 LYMEGEKFSSYRLLRSVKNR 378
+ +E + + +LR ++R
Sbjct: 187 IRLEKKDSARRAMLRKHRSR 206
>sp|B5Y8Q8|LON_COPPD Lon protease OS=Coprothermobacter proteolyticus (strain ATCC 35245
/ DSM 5265 / BT) GN=lon PE=3 SV=1
Length = 768
Score = 47.0 bits (110), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 51/90 (56%), Gaps = 3/90 (3%)
Query: 494 LAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAE 553
+ +A A+ S+ + P+PN +A GEI + G++ + ++++V ++G + I+PK +
Sbjct: 675 ITIATAMISALKKEPVPNDLAMTGEITITGKVLPIGGVKEKVLAAHRIGLDRVILPKDNK 734
Query: 554 KSLATLGFE---QMEFIGCKNLKEVINVVF 580
++ +G E ++ F + +V+ +VF
Sbjct: 735 INMEEIGDEVKKKLRFYFVDTMDQVVEIVF 764
>sp|A8F811|LON_THELT Lon protease OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM
14385 / TMO) GN=lon PE=3 SV=1
Length = 781
Score = 46.6 bits (109), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 62/112 (55%), Gaps = 6/112 (5%)
Query: 471 KLQENAIFLNVVSGVALTE--TAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMV 528
K Q++ I +N+ G + +AG + + A+ SS L P+ N A GEI L G++ V
Sbjct: 667 KFQQSDIHINLPEGAVPKDGPSAG-ITMTVAMISSVLGKPVRNDTAMTGEITLRGKILAV 725
Query: 529 SRMEKRVSTVAKLGYRKCIVPKSAEKSLATLG---FEQMEFIGCKNLKEVIN 577
+++++ + G ++ ++PK+ EK L + ++MEFI +++++ +
Sbjct: 726 GGVKEKILAAHRHGIKRILLPKTNEKDLKRIPPQVKDKMEFIFVEDIEKAVE 777
>sp|B0TZA7|LON_FRAP2 Lon protease OS=Francisella philomiragia subsp. philomiragia
(strain ATCC 25017) GN=lon PE=3 SV=1
Length = 774
Score = 46.6 bits (109), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 50/90 (55%), Gaps = 3/90 (3%)
Query: 494 LAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAE 553
+A+ A+ S + P+ N IA GE+ L G++ + +++++ + G ++ ++PK
Sbjct: 685 IAMTTALVSVYTNKPVRNDIAMTGEVTLRGDVLAIGGLKEKLLAALRGGIKEVLIPKQNV 744
Query: 554 KSLATLG---FEQMEFIGCKNLKEVINVVF 580
K+LA + E++E ++KEV+ VF
Sbjct: 745 KNLADVDKEILEKLEITPVNSIKEVLERVF 774
>sp|Q72JM6|LON2_THET2 Lon protease 2 OS=Thermus thermophilus (strain HB27 / ATCC BAA-163
/ DSM 7039) GN=lon2 PE=3 SV=1
Length = 804
Score = 46.2 bits (108), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 64/261 (24%), Positives = 118/261 (45%), Gaps = 34/261 (13%)
Query: 335 LAGHVTKSGDIAGPRVLEHIVDAVLYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLG 394
L H T+ AG R LE + A+L + ++ R+L K R T++
Sbjct: 538 LITHYTRE---AGVRQLEREIGALL-----RKAARRILEEGKKRVRITEK---------D 580
Query: 395 LQAVSNPSKIFLSEQHSDSEFLAGLAVAVIMD--GSRSFLIEIQALCVSGSTV-SRHVNG 451
L+A P + FL E + E G+A + G +E+ + G+ + + +
Sbjct: 581 LEAYLGPPR-FLPETEA-REPQVGVATGMYYTPVGGDIMFVEVSVMPGKGNLILTGQLGD 638
Query: 452 IQASRADMIISVLMKQA---GL---KLQENAIFLNVVSGVALTE--TAGDLAVAAAICSS 503
+ A +S K A G+ K ++ I ++V +G E +AG +A+ +A+ S+
Sbjct: 639 VMKESARAALSYAKKNALRFGIPLEKFDKSDIHIHVPAGAIPKEGPSAG-VALVSALVSA 697
Query: 504 FLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLG--- 560
E P+ + IA GEI L G + + ++++V + G R+ I+PK E LA +
Sbjct: 698 LTEVPVRHDIAMTGEITLTGRVLPIGGVKEKVLGARRAGIREVILPKLNEPDLADIPKPL 757
Query: 561 FEQMEFIGCKNLKEVINVVFT 581
+ M F ++L +V+++
Sbjct: 758 RQNMTFHFVEHLDQVLDLALV 778
>sp|Q180E4|LON_CLOD6 Lon protease OS=Clostridium difficile (strain 630) GN=lon PE=3 SV=2
Length = 787
Score = 46.2 bits (108), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 57/107 (53%), Gaps = 6/107 (5%)
Query: 475 NAIFLNVVSGVALTE--TAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRME 532
N I +++ G + +AG + +A A+ S+ + P+P IA GEI L G + V ++
Sbjct: 669 NDIHIHIPEGAVPKDGPSAG-ITMALAVISALTKRPVPGNIAMTGEITLRGRVLAVGGVK 727
Query: 533 KRVSTVAKLGYRKCIVPKSAEKSLATLG---FEQMEFIGCKNLKEVI 576
+++ + G K ++PK E L + E+MEF+ +++ EV+
Sbjct: 728 EKLLAAHRAGITKVLIPKECEADLDEIPENVKEKMEFVLVEHMDEVL 774
>sp|Q58812|LONB_METJA Archaeal Lon protease OS=Methanocaldococcus jannaschii (strain ATCC
43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=MJ1417 PE=1 SV=1
Length = 649
Score = 45.8 bits (107), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 488 TETAGDLAVAA---AICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYR 544
++ GD A AA AI S+ L+ P+ A G + L G + + + +++ + G++
Sbjct: 544 SKIDGDSATAAVCLAIISALLDIPLKQDFAITGSLDLSGNVLAIGGVNEKIEAAKRYGFK 603
Query: 545 KCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVF 580
+ I+P++ + + E +E I K L E++ +VF
Sbjct: 604 RVIIPEA--NMIDVIETEGIEIIPVKTLDEIVPLVF 637
>sp|Q9UYC6|LONB_PYRAB Archaeal Lon protease OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=lon PE=3 SV=1
Length = 998
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 4/105 (3%)
Query: 478 FLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVST 537
FL GV + ++VA A+ S+ E P+ +A G + + GE+ V + ++
Sbjct: 848 FLQTYEGVE--GDSASISVATAVISALEEIPVRQDVAMTGSLSVRGEVLPVGGVTPKIEA 905
Query: 538 VAKLGYRKCIVPKSAEKS--LATLGFEQMEFIGCKNLKEVINVVF 580
+ G +K I+PK+ EK L+ E++E I + + EV+ V
Sbjct: 906 AIEAGIKKVIIPKANEKDVFLSPDKREKIEIIPVERIDEVLEVAL 950
>sp|O15315|RA51B_HUMAN DNA repair protein RAD51 homolog 2 OS=Homo sapiens GN=RAD51B PE=1
SV=2
Length = 384
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 89/197 (45%), Gaps = 28/197 (14%)
Query: 200 LGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDL-GEPSPVVYV------SGEESV 252
L GG+ GSL I G PG GK+ + M+ + ++ G VVY+ S E V
Sbjct: 94 LHGGVACGSLTEITGPPGCGKTQFCIMMSILATLPTNMGGLEGAVVYIDTESAFSAERLV 153
Query: 253 E-------QIGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSP-------RALIIDSIQ 298
E + N +++++ + ++ LY ++++++++ L + +I+DS+
Sbjct: 154 EIAESRFPRYFNTEEKLLLTSSKVHLYRELTCDEVLQRIESLEEEIISKGIKLVILDSVA 213
Query: 299 TVYLRGVAGSAGGLMQVKEC-----TSALLRFAKKTNIPVLLAGHVTK--SGDIAGPRVL 351
+V + G ++ + S+L A++ +IPV+L +T SG +A L
Sbjct: 214 SVVRKEFDAQLQGNLKERNKFLAREASSLKYLAEEFSIPVILTNQITTHLSGALASQADL 273
Query: 352 EHIVDAVLYMEGEKFSS 368
D + EG SS
Sbjct: 274 VSPADDLSLSEGTSGSS 290
>sp|Q57702|RADB_METJA DNA repair and recombination protein RadB OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=radB PE=3 SV=1
Length = 212
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 92/191 (48%), Gaps = 28/191 (14%)
Query: 199 VLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVSGE-----ESVE 253
+L G G + I G PGVGK+ + II ++ + V+Y+ E E ++
Sbjct: 5 ILLGNAEKGIITQIYGPPGVGKTNI-----CIINSINAVN-SGKVIYIDTEGGLSIERIK 58
Query: 254 QIGNRADRMMIATEELFLYSSTDI---EDIVEKVQPL---SPRALIIDSIQTVYLRGVAG 307
QI ++ I E + +Y++ D + I++K PL + +++D+I ++Y ++
Sbjct: 59 QIA--SNNYKIVLENMIIYNAFDFYEQDKIIQKELPLITNNASLIVVDNITSLYRLELSD 116
Query: 308 SAGGLMQVKEC----TSALLRFAKKTNIPVLLAGHV--TKSG-DIAGPRVLEHIVDAVLY 360
A + + + LL+ AK N+ V++ V T +G + +G R+LE+ ++
Sbjct: 117 EANKNIMLNKMLGNQVKTLLKLAKTNNLAVIITNQVRETVNGFEASGGRLLEYWSKCIVR 176
Query: 361 MEGEKFSSYRL 371
+ EK + RL
Sbjct: 177 L--EKLNGDRL 185
>sp|A6VJS2|RADB_METM7 DNA repair and recombination protein RadB OS=Methanococcus
maripaludis (strain C7 / ATCC BAA-1331) GN=radB PE=3
SV=1
Length = 215
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 102/221 (46%), Gaps = 27/221 (12%)
Query: 196 VARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVS--GEESVE 253
+ +L G + ++ I G PGVGK+ + I++ ++ + VVY+ G S+E
Sbjct: 2 LEELLNGNIEKKTITQIYGPPGVGKTNI-----CILSMLNAIENGKSVVYIDTEGSLSIE 56
Query: 254 QI----GNRADRMMIATEELFLYSSTDIE---DIVEKVQPLSPRAL-IIDSIQTVYLRGV 305
+I G + ++ + + +Y + E + +EK+ L L IID I ++Y +
Sbjct: 57 RIKQLSGKNCEELL---KNIIIYEPSTFEEQSEALEKIFLLENIGLIIIDGIVSLYRLEL 113
Query: 306 AGSAGGLMQVKEC----TSALLRFAKKTNIPVLLAGHVTKSGD---IAGPRVLEHIVDAV 358
+ ++ S LL+ A+K N +L+ V S + AG R+LE+ ++
Sbjct: 114 CDNINENTKLNRMLGKQISNLLKVARKKNSGILITNQVKDSANGIEPAGGRLLEYWSKSI 173
Query: 359 LYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVS 399
+ + EK S R L K+R E F + Q GL+ ++
Sbjct: 174 IKL--EKAESVRKLTLEKHRHAKEGENLRFRILQNGLEIIN 212
>sp|Q89A99|LON_BUCBP Lon protease OS=Buchnera aphidicola subsp. Baizongia pistaciae
(strain Bp) GN=lon PE=3 SV=1
Length = 780
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 81/161 (50%), Gaps = 15/161 (9%)
Query: 432 LIEIQALCVSGS---TVSRHVNGIQASRADMIISVLMKQA---GLK---LQENAIFLNVV 482
L+ I+A C+SG + + + ++V+ QA G+K ++N I ++V
Sbjct: 610 LLTIEAACISGKGKLIYTGSLGEVMQESIQAALTVVRSQANKLGIKKNFYEKNDIHVHVP 669
Query: 483 SGVALTE--TAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAK 540
G + +AG +A+ AI S P+ + IA GEI L G++ + +++++ +
Sbjct: 670 EGATPKDGPSAG-IAMCTAIVSCLTGIPVKSDIAMTGEITLRGQILTIGGLKEKLLAAHR 728
Query: 541 LGYRKCIVPKSAEKSLATLGFEQME--FIG-CKNLKEVINV 578
G +K ++P EK L + ++ F+ K++KEV+N+
Sbjct: 729 GGIKKVLIPYDNEKDLQEIPKTILKGLFVHPVKHIKEVLNL 769
>sp|B3CLB3|LON_WOLPP Lon protease OS=Wolbachia pipientis subsp. Culex pipiens (strain
wPip) GN=lon PE=3 SV=1
Length = 818
Score = 43.5 bits (101), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 6/118 (5%)
Query: 471 KLQENAIFLNVVSGVALTE--TAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMV 528
K Q N I L+V G + +AG AV +I S P+ +A GE+ L G + +
Sbjct: 671 KFQNNDIHLHVPEGAVPKDGPSAGS-AVCTSIVSLMTNIPVNKSVAMTGEVTLRGRVLAI 729
Query: 529 SRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGF---EQMEFIGCKNLKEVINVVFTTP 583
+ +++ + + I+P EK + + E++ I +N+ EVI V P
Sbjct: 730 GGLREKLLAALRGSIKTVIIPSENEKDMQEIPANIKEEINVIFAENIDEVIKVALMHP 787
>sp|P95547|RADB_PYRKO DNA repair and recombination protein RadB OS=Pyrococcus
kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1)
GN=radB PE=1 SV=2
Length = 220
Score = 42.7 bits (99), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 89/215 (41%), Gaps = 22/215 (10%)
Query: 199 VLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAI----IADVHDLGEPSPVVYVSGEESVEQ 254
+LGGG PG L + G GK+TL LQ + +A V G SP E V+
Sbjct: 12 LLGGGFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEGGFSP------ERLVQM 65
Query: 255 IGNRADRMMIATEELFLYSSTDIEDIVEKVQPLSPRA------LIIDSIQTVYLRGVAGS 308
R A L++ +D ++ + L +++DSI T + R
Sbjct: 66 AETRGLNPEEALSRFILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSI-TAHYRAEENR 124
Query: 309 AGGLMQVKECTSALLRFAKKTNIPVLLAG--HVTKSGDIAGP---RVLEHIVDAVLYMEG 363
+G + ++ LL A+K NIPV++ H ++ P + L + +L ++
Sbjct: 125 SGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDK 184
Query: 364 EKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAV 398
R+ ++RF + F +++ G++ V
Sbjct: 185 LPKPGLRVAVLERHRFRPEGLMAYFRITERGIEDV 219
>sp|B3E7K2|LON_GEOLS Lon protease OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278
/ SZ) GN=lon PE=3 SV=1
Length = 816
Score = 42.4 bits (98), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 58/114 (50%), Gaps = 6/114 (5%)
Query: 472 LQENAIFLNVVSGVALTE--TAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVS 529
QEN I ++V +G + +AG A+A A+ S + P+ +A GEI L G++ +
Sbjct: 675 FQENEIHVHVPAGAVPKDGPSAG-CAMATALISVLTKVPVKKDVAMTGEISLRGKVLPIG 733
Query: 530 RMEKRVSTVAKLGYRKCIVPKSAEKSLATLGF---EQMEFIGCKNLKEVINVVF 580
+++++ + G + I+P+ K L + ++++ + K + EV+ +
Sbjct: 734 GLKEKILAAVRAGMKMVIIPEQNRKDLEDIPKAMQKKVKIVPVKEIDEVLKLAL 787
>sp|P0CW61|RADB_METMP DNA repair and recombination protein RadB OS=Methanococcus
maripaludis (strain S2 / LL) GN=radB PE=3 SV=1
Length = 216
Score = 42.4 bits (98), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 101/221 (45%), Gaps = 27/221 (12%)
Query: 196 VARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVS--GEESVE 253
+ +L G + ++ I G PGVGK+ + II+ + + VVY+ G S+E
Sbjct: 2 LEELLNGNIEKKTITQIYGPPGVGKTNI-----CIISMLKAIENGKNVVYIDTEGSLSIE 56
Query: 254 QI----GNRADRMMIATEELFLYSSTDIE---DIVEKVQPLSPRAL-IIDSIQTVYLRGV 305
+I G D ++ + + +Y + E + +EK+ L L IID I ++Y +
Sbjct: 57 RIKQLSGKDCDELL---KNIIIYEPSSFEEQSEALEKIFLLENVGLIIIDGIVSLYRLEL 113
Query: 306 AGSAGGLMQVKEC----TSALLRFAKKTNIPVLLAGHVTKSGD---IAGPRVLEHIVDAV 358
++ S LL+ +++ N +L+ V S + AG R+LE+ ++
Sbjct: 114 CDKINENTKLNRMLGKQISNLLKVSRQKNSGILITNQVKDSINGIEPAGGRLLEYWSKSI 173
Query: 359 LYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVS 399
+ + EK S R L K+R E F++ Q GL+ ++
Sbjct: 174 IKI--EKSESIRKLTLEKHRHAKEGENLRFKILQNGLEIIN 212
>sp|P0CW60|RADB_METMI DNA repair and recombination protein RadB OS=Methanococcus
maripaludis GN=radB PE=3 SV=1
Length = 216
Score = 42.4 bits (98), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 101/221 (45%), Gaps = 27/221 (12%)
Query: 196 VARVLGGGLVPGSLVLIGGDPGVGKSTLLLQMAAIIADVHDLGEPSPVVYVS--GEESVE 253
+ +L G + ++ I G PGVGK+ + II+ + + VVY+ G S+E
Sbjct: 2 LEELLNGNIEKKTITQIYGPPGVGKTNI-----CIISMLKAIENGKNVVYIDTEGSLSIE 56
Query: 254 QI----GNRADRMMIATEELFLYSSTDIE---DIVEKVQPLSPRAL-IIDSIQTVYLRGV 305
+I G D ++ + + +Y + E + +EK+ L L IID I ++Y +
Sbjct: 57 RIKQLSGKDCDELL---KNIIIYEPSSFEEQSEALEKIFLLENVGLIIIDGIVSLYRLEL 113
Query: 306 AGSAGGLMQVKEC----TSALLRFAKKTNIPVLLAGHVTKSGD---IAGPRVLEHIVDAV 358
++ S LL+ +++ N +L+ V S + AG R+LE+ ++
Sbjct: 114 CDKINENTKLNRMLGKQISNLLKVSRQKNSGILITNQVKDSINGIEPAGGRLLEYWSKSI 173
Query: 359 LYMEGEKFSSYRLLRSVKNRFGSTDELGVFEMSQLGLQAVS 399
+ + EK S R L K+R E F++ Q GL+ ++
Sbjct: 174 IKI--EKSESIRKLTLEKHRHAKEGENLRFKILQNGLEIIN 212
>sp|B1AIY7|LON_UREP2 Lon protease OS=Ureaplasma parvum serovar 3 (strain ATCC 27815 / 27
/ NCTC 11736) GN=lon PE=3 SV=1
Length = 791
Score = 42.0 bits (97), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 494 LAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAE 553
+A+ AI SS + P+ ++ GEI L G + ++ ++++V + + G R+ I+P E
Sbjct: 699 IAITTAIISSLSQRPVRTTLSMTGEIMLRGNVGIIGGVKEKVISAYRAGVREIILPIDDE 758
Query: 554 KSLATLG---FEQMEFIGCKNLKEVINVVF 580
+ L + + ++ K+ EV N+VF
Sbjct: 759 RYLEDVPKYILDDIKIHLVKHYDEVYNIVF 788
>sp|Q3JBB6|LON_NITOC Lon protease OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB
11848) GN=lon PE=3 SV=1
Length = 772
Score = 42.0 bits (97), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 62/110 (56%), Gaps = 6/110 (5%)
Query: 472 LQENAIFLNVVSGVALTE--TAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVS 529
++E+ + ++V +G + +AG + +A+A+ S++ P+ + A GEI L G + V
Sbjct: 655 IRESGVHIHVPAGAIPKDGPSAG-VTMASALTSAYAHQPVRSDTAMTGEITLSGLVLPVG 713
Query: 530 RMEKRVSTVAKLGYRKCIVPKSAEKSLATLG---FEQMEFIGCKNLKEVI 576
++++V + G ++ I+PK EK L + + ++FI + ++EV+
Sbjct: 714 GIKEKVLAAHRSGIQRIILPKENEKDLREIPEHVRQSIQFILARRIEEVL 763
>sp|Q600B5|LON_MYCH2 Lon protease OS=Mycoplasma hyopneumoniae (strain 232) GN=lon PE=3
SV=1
Length = 870
Score = 41.2 bits (95), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Query: 494 LAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAE 553
+ A AI S+ + P+ + IA GEI L G++ + ++++ K G + +PK+ E
Sbjct: 780 ITFATAIISALSQKPVSHNIAMTGEITLRGKVLAIGGLKEKTMGAYKNGIKIIFIPKANE 839
Query: 554 KSLATLGFE---QMEFIGCKNLKEVINVVF 580
K+L + E ++FI +++ + +F
Sbjct: 840 KNLVDIPQEVKDVIQFIPVDTYQQIYDFIF 869
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 206,766,336
Number of Sequences: 539616
Number of extensions: 8689484
Number of successful extensions: 31378
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 249
Number of HSP's that attempted gapping in prelim test: 31014
Number of HSP's gapped (non-prelim): 485
length of query: 583
length of database: 191,569,459
effective HSP length: 123
effective length of query: 460
effective length of database: 125,196,691
effective search space: 57590477860
effective search space used: 57590477860
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)